Query psy9396
Match_columns 1149
No_of_seqs 313 out of 2342
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 18:04:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9396.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9396hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06920 dnaE DNA polymerase I 100.0 1E-289 2E-294 2686.2 120.8 1094 4-1147 2-1107(1107)
2 PRK05673 dnaE DNA polymerase I 100.0 2E-287 4E-292 2691.7 125.6 1114 4-1141 1-1135(1135)
3 PRK07374 dnaE DNA polymerase I 100.0 2E-287 5E-292 2681.2 123.8 1107 4-1138 2-1157(1170)
4 PRK06826 dnaE DNA polymerase I 100.0 2E-286 3E-291 2675.7 123.9 1110 1-1146 1-1150(1151)
5 COG0587 DnaE DNA polymerase II 100.0 3E-286 6E-291 2631.5 109.7 1117 3-1146 2-1138(1139)
6 PRK07279 dnaE DNA polymerase I 100.0 2E-277 4E-282 2546.3 111.9 1023 4-1140 1-1029(1034)
7 TIGR00594 polc DNA-directed DN 100.0 2E-265 4E-270 2479.0 108.7 1000 5-1023 1-1022(1022)
8 PRK05672 dnaE2 error-prone DNA 100.0 1E-262 3E-267 2448.4 111.3 1021 1-1067 1-1033(1046)
9 PRK07135 dnaE DNA polymerase I 100.0 4E-258 8E-263 2366.7 103.6 951 4-1049 2-961 (973)
10 PRK05898 dnaE DNA polymerase I 100.0 9E-250 2E-254 2271.1 91.5 949 4-1041 1-955 (971)
11 PRK09532 DNA polymerase III su 100.0 1E-211 2E-216 1955.8 74.9 826 4-854 2-866 (874)
12 TIGR01405 polC_Gram_pos DNA po 100.0 4E-180 8E-185 1705.3 76.0 782 4-893 103-1207(1213)
13 PRK00448 polC DNA polymerase I 100.0 3E-173 7E-178 1656.6 78.4 784 4-893 333-1430(1437)
14 PF07733 DNA_pol3_alpha: Bacte 100.0 4E-136 9E-141 1190.6 29.1 423 292-729 1-426 (426)
15 COG2176 PolC DNA polymerase II 100.0 4E-117 9E-122 1060.6 64.2 774 4-892 335-1437(1444)
16 PRK07373 DNA polymerase III su 100.0 1.3E-82 2.9E-87 744.9 43.8 380 745-1140 33-437 (449)
17 PF14579 HHH_6: Helix-hairpin- 99.9 4.3E-23 9.4E-28 192.5 9.6 89 803-897 1-90 (90)
18 PF02811 PHP: PHP domain; Int 99.8 1.1E-20 2.4E-25 196.7 13.7 172 6-183 1-174 (175)
19 smart00481 POLIIIAc DNA polyme 99.6 6.4E-16 1.4E-20 136.3 7.5 65 7-71 1-65 (67)
20 PRK06361 hypothetical protein; 99.3 2.9E-11 6.2E-16 131.0 15.9 176 10-226 1-191 (212)
21 PRK09248 putative hydrolase; V 99.2 8.7E-11 1.9E-15 130.3 14.4 178 1-206 1-197 (246)
22 cd04489 ExoVII_LU_OBF ExoVII_L 99.2 5.3E-11 1.2E-15 107.9 9.7 75 987-1064 2-76 (78)
23 cd04490 PolII_SU_OBF PolII_SU_ 99.2 1.7E-10 3.7E-15 105.1 9.7 70 987-1063 2-73 (79)
24 COG0613 Predicted metal-depend 99.1 2.3E-10 5.1E-15 127.3 8.2 175 4-205 2-177 (258)
25 COG1387 HIS2 Histidinol phosph 99.1 2.5E-09 5.4E-14 117.8 15.8 197 5-224 2-216 (237)
26 cd04485 DnaE_OBF DnaE_OBF: A s 99.0 1.7E-09 3.6E-14 98.5 11.7 79 989-1069 2-81 (84)
27 PRK07328 histidinol-phosphatas 99.0 1.6E-09 3.4E-14 121.8 13.8 192 4-207 2-234 (269)
28 PRK08392 hypothetical protein; 99.0 4.1E-09 8.9E-14 114.6 15.3 170 6-207 1-187 (215)
29 PRK00912 ribonuclease P protei 98.9 5E-09 1.1E-13 115.6 12.4 164 3-206 1-179 (237)
30 PRK07945 hypothetical protein; 98.9 1.1E-08 2.4E-13 118.2 14.0 178 5-208 97-298 (335)
31 TIGR00375 conserved hypothetic 98.9 1.4E-07 3E-12 109.3 22.1 317 5-365 1-368 (374)
32 TIGR01856 hisJ_fam histidinol 98.8 5.8E-08 1.3E-12 108.2 12.8 67 7-74 2-89 (253)
33 PRK08609 hypothetical protein; 98.7 5.4E-08 1.2E-12 119.9 12.1 176 4-207 334-531 (570)
34 PRK08123 histidinol-phosphatas 98.7 1.4E-07 3.1E-12 106.1 13.8 69 4-73 2-94 (270)
35 PF01336 tRNA_anti-codon: OB-f 98.6 2.1E-07 4.6E-12 83.2 10.7 74 987-1065 1-75 (75)
36 cd04492 YhaM_OBF_like YhaM_OBF 98.6 1.5E-07 3.3E-12 85.8 8.9 74 991-1067 4-78 (83)
37 cd03524 RPA2_OBF_family RPA2_O 98.4 1.4E-06 3E-11 76.6 9.8 71 989-1063 2-74 (75)
38 PRK05588 histidinol-phosphatas 98.4 1.9E-06 4E-11 96.3 13.1 67 6-74 2-78 (255)
39 PRK07329 hypothetical protein; 98.3 3E-06 6.5E-11 94.1 11.8 188 6-208 2-223 (246)
40 PRK06740 histidinol-phosphatas 97.9 9.6E-05 2.1E-09 85.6 12.6 44 164-207 250-297 (331)
41 PF13742 tRNA_anti_2: OB-fold 97.4 0.0011 2.3E-08 63.4 10.2 77 985-1064 22-99 (99)
42 PRK13480 3'-5' exoribonuclease 97.4 0.00049 1.1E-08 78.8 9.2 87 977-1066 4-91 (314)
43 COG1379 PHP family phosphoeste 97.2 0.025 5.5E-07 63.2 18.5 201 5-222 4-225 (403)
44 cd04478 RPA2_DBD_D RPA2_DBD_D: 97.0 0.0018 3.9E-08 61.0 6.8 75 987-1067 2-79 (95)
45 cd04322 LysRS_N LysRS_N: N-ter 96.9 0.0091 2E-07 57.9 10.8 77 986-1067 1-82 (108)
46 cd04483 hOBFC1_like hOBFC1_lik 96.8 0.0041 8.8E-08 58.6 7.5 68 989-1062 2-89 (92)
47 cd04487 RecJ_OBF2_like RecJ_OB 96.7 0.0052 1.1E-07 55.3 7.3 72 987-1064 1-72 (73)
48 PRK06461 single-stranded DNA-b 96.7 0.0065 1.4E-07 60.9 8.5 85 976-1066 5-99 (129)
49 cd04474 RPA1_DBD_A RPA1_DBD_A: 96.6 0.0074 1.6E-07 58.2 8.1 71 977-1047 1-79 (104)
50 cd04321 ScAspRS_mt_like_N ScAs 96.4 0.023 5E-07 52.7 9.9 76 986-1065 1-84 (86)
51 COG1555 ComEA DNA uptake prote 96.4 0.0039 8.4E-08 64.0 4.8 45 835-882 99-144 (149)
52 cd04484 polC_OBF polC_OBF: A s 96.3 0.033 7.2E-07 51.4 10.2 76 987-1063 2-80 (82)
53 cd04488 RecG_wedge_OBF RecG_we 96.3 0.027 6E-07 49.7 9.4 67 989-1059 2-69 (75)
54 PF12836 HHH_3: Helix-hairpin- 96.3 0.0033 7.3E-08 55.2 3.2 45 834-881 15-60 (65)
55 COG5235 RFA2 Single-stranded D 96.2 0.013 2.8E-07 61.5 7.7 76 986-1067 68-145 (258)
56 cd04319 PhAsnRS_like_N PhAsnRS 95.9 0.064 1.4E-06 51.5 10.1 77 986-1067 1-82 (103)
57 cd04316 ND_PkAspRS_like_N ND_P 95.8 0.062 1.3E-06 52.1 9.9 79 984-1067 12-96 (108)
58 PRK00286 xseA exodeoxyribonucl 95.6 0.13 2.9E-06 62.2 14.0 78 985-1065 24-101 (438)
59 cd04320 AspRS_cyto_N AspRS_cyt 95.6 0.066 1.4E-06 51.3 9.1 77 986-1067 1-91 (102)
60 cd04482 RPA2_OBF_like RPA2_OBF 95.6 0.035 7.7E-07 52.2 6.9 72 988-1066 2-75 (91)
61 COG1570 XseA Exonuclease VII, 95.5 0.12 2.6E-06 61.3 12.5 78 985-1065 24-101 (440)
62 cd04100 Asp_Lys_Asn_RS_N Asp_L 95.5 0.067 1.4E-06 49.4 8.5 74 986-1064 1-82 (85)
63 cd04323 AsnRS_cyto_like_N AsnR 95.5 0.088 1.9E-06 48.6 9.1 73 986-1063 1-80 (84)
64 cd04491 SoSSB_OBF SoSSB_OBF: A 95.5 0.076 1.6E-06 48.7 8.6 69 989-1062 2-76 (82)
65 TIGR00237 xseA exodeoxyribonuc 95.4 0.18 3.9E-06 60.9 13.9 77 986-1065 19-95 (432)
66 COG1491 Predicted RNA-binding 95.3 0.02 4.3E-07 59.3 4.6 40 831-870 127-167 (202)
67 PRK08486 single-stranded DNA-b 95.3 0.1 2.2E-06 55.4 10.0 81 986-1066 4-106 (182)
68 PF04919 DUF655: Protein of un 95.2 0.019 4E-07 59.9 4.2 39 831-869 113-152 (181)
69 PRK03932 asnC asparaginyl-tRNA 95.2 0.28 6E-06 59.6 14.6 79 984-1067 16-99 (450)
70 cd04318 EcAsnRS_like_N EcAsnRS 95.0 0.17 3.7E-06 46.3 9.6 73 987-1064 2-79 (82)
71 PRK07275 single-stranded DNA-b 95.0 0.12 2.6E-06 53.9 9.4 81 986-1066 4-104 (162)
72 PRK06751 single-stranded DNA-b 94.9 0.13 2.8E-06 54.2 9.4 81 986-1066 4-104 (173)
73 PRK07459 single-stranded DNA-b 94.9 0.18 4E-06 50.0 10.1 81 986-1066 5-102 (121)
74 TIGR00499 lysS_bact lysyl-tRNA 94.6 0.19 4.1E-06 61.7 11.2 78 985-1067 54-136 (496)
75 cd04317 EcAspRS_like_N EcAspRS 94.5 0.18 3.9E-06 50.8 9.1 80 984-1068 14-104 (135)
76 TIGR00426 competence protein C 94.5 0.062 1.3E-06 47.7 5.0 47 834-883 17-65 (69)
77 PRK00484 lysS lysyl-tRNA synth 94.1 0.2 4.4E-06 61.3 10.1 77 985-1067 55-136 (491)
78 COG4085 Predicted RNA-binding 94.0 0.29 6.3E-06 51.4 9.2 78 986-1068 53-136 (204)
79 PRK06293 single-stranded DNA-b 94.0 0.44 9.5E-06 49.6 10.5 81 986-1066 3-100 (161)
80 PRK12445 lysyl-tRNA synthetase 93.8 0.3 6.5E-06 60.0 10.7 78 986-1068 67-149 (505)
81 PLN02502 lysyl-tRNA synthetase 93.8 0.36 7.7E-06 59.8 11.2 79 985-1068 109-194 (553)
82 PRK06958 single-stranded DNA-b 93.7 0.42 9E-06 50.7 10.1 82 986-1067 6-110 (182)
83 PTZ00385 lysyl-tRNA synthetase 93.7 0.51 1.1E-05 59.1 12.4 77 986-1067 109-191 (659)
84 PRK06752 single-stranded DNA-b 93.5 0.61 1.3E-05 45.6 10.2 81 986-1066 4-104 (112)
85 PRK08402 replication factor A; 93.2 0.39 8.4E-06 56.3 9.6 84 976-1060 63-154 (355)
86 TIGR00458 aspS_arch aspartyl-t 93.2 0.51 1.1E-05 57.0 11.0 79 984-1067 12-96 (428)
87 PRK08763 single-stranded DNA-b 93.2 0.63 1.4E-05 48.6 10.2 81 986-1066 7-109 (164)
88 TIGR01259 comE comEA protein. 93.1 0.13 2.8E-06 51.0 4.9 46 834-882 69-115 (120)
89 PTZ00401 aspartyl-tRNA synthet 93.0 0.92 2E-05 56.3 13.1 87 976-1066 66-167 (550)
90 PF10451 Stn1: Telomere regula 93.0 0.5 1.1E-05 52.9 9.9 75 986-1065 68-147 (256)
91 PF13263 PHP_C: PHP-associated 92.9 0.073 1.6E-06 45.4 2.4 26 182-207 3-28 (56)
92 PRK07211 replication factor A; 92.8 0.63 1.4E-05 56.4 11.0 86 976-1063 54-147 (485)
93 TIGR00621 ssb single stranded 92.0 1 2.2E-05 47.1 10.1 81 986-1066 6-108 (164)
94 PRK06863 single-stranded DNA-b 92.0 1.1 2.4E-05 47.1 10.2 81 986-1066 6-109 (168)
95 PRK05159 aspC aspartyl-tRNA sy 91.9 0.65 1.4E-05 56.2 9.8 161 977-1144 6-205 (437)
96 PF00436 SSB: Single-strand bi 91.9 1.3 2.9E-05 41.9 10.1 78 986-1063 3-102 (104)
97 PRK15491 replication factor A; 91.8 0.47 1E-05 56.2 8.1 88 976-1065 58-153 (374)
98 PRK02801 primosomal replicatio 91.6 1.8 3.8E-05 41.6 10.5 78 986-1063 4-98 (101)
99 PRK12820 bifunctional aspartyl 91.6 0.85 1.9E-05 57.8 10.5 85 977-1066 8-108 (706)
100 TIGR00457 asnS asparaginyl-tRN 91.6 0.79 1.7E-05 55.7 10.0 79 984-1067 16-101 (453)
101 PF15072 DUF4539: Domain of un 91.5 0.55 1.2E-05 43.7 6.6 52 988-1043 6-57 (86)
102 PRK07274 single-stranded DNA-b 91.5 1.5 3.2E-05 44.2 10.3 81 986-1066 4-103 (131)
103 TIGR00459 aspS_bact aspartyl-t 91.5 0.86 1.9E-05 56.8 10.3 78 984-1066 15-102 (583)
104 PLN02903 aminoacyl-tRNA ligase 91.2 0.91 2E-05 57.0 10.1 79 984-1067 72-162 (652)
105 PTZ00417 lysine-tRNA ligase; P 91.1 1.8 3.9E-05 54.1 12.5 77 986-1067 134-218 (585)
106 PRK07772 single-stranded DNA-b 91.1 1.5 3.2E-05 46.8 10.1 78 986-1063 6-107 (186)
107 PRK13732 single-stranded DNA-b 91.0 1.8 3.8E-05 45.8 10.6 65 986-1050 8-88 (175)
108 COG0017 AsnS Aspartyl/asparagi 90.8 0.89 1.9E-05 54.2 9.1 78 985-1068 17-100 (435)
109 PRK06642 single-stranded DNA-b 90.8 1.6 3.5E-05 45.1 9.9 77 986-1062 7-107 (152)
110 PRK00476 aspS aspartyl-tRNA sy 90.8 1.2 2.5E-05 56.0 10.5 79 984-1067 17-105 (588)
111 PLN02850 aspartate-tRNA ligase 90.7 1.2 2.6E-05 55.1 10.5 86 976-1065 70-169 (530)
112 PRK02515 psbU photosystem II c 90.6 0.36 7.9E-06 47.9 4.7 43 834-882 62-104 (132)
113 PRK10917 ATP-dependent DNA hel 90.6 1.2 2.6E-05 57.0 10.8 77 976-1057 51-129 (681)
114 PRK08182 single-stranded DNA-b 90.4 2.1 4.7E-05 44.0 10.4 81 986-1066 4-111 (148)
115 PRK02983 lysS lysyl-tRNA synth 90.3 1.1 2.4E-05 59.9 10.3 78 984-1066 651-733 (1094)
116 PRK07211 replication factor A; 90.2 1.3 2.8E-05 53.7 9.9 82 976-1060 162-251 (485)
117 TIGR00643 recG ATP-dependent D 90.1 1.4 3.1E-05 55.9 10.7 78 976-1058 24-103 (630)
118 COG1190 LysU Lysyl-tRNA synthe 89.8 1.5 3.2E-05 52.9 9.7 77 986-1067 63-144 (502)
119 PRK09010 single-stranded DNA-b 89.8 2.5 5.4E-05 44.8 10.5 66 986-1051 8-89 (177)
120 cd04496 SSB_OBF SSB_OBF: A sub 89.1 3.1 6.7E-05 39.0 9.8 63 988-1050 2-78 (100)
121 cd04497 hPOT1_OB1_like hPOT1_O 89.1 1.4 2.9E-05 44.9 7.7 84 976-1061 4-95 (138)
122 PRK06341 single-stranded DNA-b 89.1 3.2 6.8E-05 43.6 10.5 65 986-1050 7-88 (166)
123 PRK15491 replication factor A; 88.8 2.1 4.5E-05 50.8 10.0 85 976-1061 167-259 (374)
124 cd04475 RPA1_DBD_B RPA1_DBD_B: 88.8 3.5 7.5E-05 39.3 9.9 68 987-1058 2-77 (101)
125 PF02765 POT1: Telomeric singl 88.5 3.7 8E-05 42.1 10.5 76 985-1062 13-101 (146)
126 COG4464 CapC Capsular polysacc 88.4 7.9 0.00017 41.9 12.8 182 6-220 2-212 (254)
127 PRK12366 replication factor A; 88.3 1.8 4E-05 54.8 9.7 83 976-1060 64-153 (637)
128 PLN02603 asparaginyl-tRNA synt 88.1 2.7 5.8E-05 52.3 10.7 79 985-1067 108-192 (565)
129 PRK05733 single-stranded DNA-b 87.7 4.1 8.8E-05 43.0 10.3 66 986-1051 7-88 (172)
130 KOG3108|consensus 87.7 1.1 2.3E-05 50.3 6.3 77 986-1068 70-148 (265)
131 TIGR00617 rpa1 replication fac 87.0 1.8 3.8E-05 54.7 8.5 74 975-1048 180-260 (608)
132 PLN02221 asparaginyl-tRNA synt 86.9 2 4.4E-05 53.4 8.8 79 985-1066 51-135 (572)
133 PRK05813 single-stranded DNA-b 86.9 3.9 8.4E-05 44.8 9.9 81 986-1067 111-209 (219)
134 PRK00448 polC DNA polymerase I 86.5 2.9 6.3E-05 57.3 10.6 91 976-1066 227-321 (1437)
135 PRK12366 replication factor A; 84.7 3.9 8.4E-05 52.0 10.0 86 977-1066 177-268 (637)
136 COG1107 Archaea-specific RecJ- 84.6 1.1 2.4E-05 54.2 4.7 85 976-1066 203-289 (715)
137 PF12228 DUF3604: Protein of u 84.6 0.67 1.5E-05 57.0 3.0 50 4-53 7-74 (592)
138 PRK07218 replication factor A; 84.0 5.5 0.00012 47.9 10.2 80 976-1061 163-247 (423)
139 PRK04036 DNA polymerase II sma 83.8 3.9 8.4E-05 50.5 9.2 73 984-1063 153-227 (504)
140 PRK14699 replication factor A; 83.7 3.4 7.3E-05 50.6 8.5 84 976-1061 58-149 (484)
141 KOG3416|consensus 83.1 3.6 7.8E-05 40.6 6.6 80 977-1061 6-88 (134)
142 PRK06386 replication factor A; 82.8 6.3 0.00014 46.3 9.8 83 976-1066 108-195 (358)
143 PRK07218 replication factor A; 82.5 13 0.00028 44.8 12.5 80 976-1062 59-143 (423)
144 COG2176 PolC DNA polymerase II 82.5 5.3 0.00011 52.4 9.6 105 977-1081 231-342 (1444)
145 PRK05813 single-stranded DNA-b 81.9 9.6 0.00021 41.8 10.3 83 984-1068 8-103 (219)
146 COG1200 RecG RecG-like helicas 81.4 7.4 0.00016 48.8 10.1 84 976-1064 52-137 (677)
147 PRK14699 replication factor A; 81.2 4.9 0.00011 49.3 8.5 90 976-1066 167-264 (484)
148 cd04480 RPA1_DBD_A_like RPA1_D 80.9 6.9 0.00015 36.1 7.7 55 990-1044 3-59 (86)
149 PRK06386 replication factor A; 80.7 9.2 0.0002 45.0 10.2 79 976-1060 3-86 (358)
150 TIGR01405 polC_Gram_pos DNA po 78.6 7.7 0.00017 52.6 9.8 82 985-1066 8-92 (1213)
151 COG0173 AspS Aspartyl-tRNA syn 77.3 6.6 0.00014 48.0 7.7 79 984-1067 15-105 (585)
152 PTZ00425 asparagine-tRNA ligas 76.6 10 0.00022 47.4 9.5 62 985-1049 82-147 (586)
153 PRK05853 hypothetical protein; 74.1 16 0.00035 38.2 8.7 38 1014-1051 41-78 (161)
154 KOG1885|consensus 73.6 9.5 0.00021 45.5 7.6 78 986-1067 106-189 (560)
155 PRK07217 replication factor A; 72.1 34 0.00074 39.4 11.3 84 977-1066 74-159 (311)
156 KOG3818|consensus 67.1 35 0.00076 40.7 10.2 123 971-1109 160-320 (525)
157 PRK11449 putative deoxyribonuc 65.3 16 0.00034 41.2 7.1 64 1-67 1-65 (258)
158 COG0629 Ssb Single-stranded DN 64.8 16 0.00034 38.4 6.5 38 1014-1051 49-86 (167)
159 PF08288 PIGA: PIGA (GPI ancho 63.7 5.1 0.00011 37.4 2.2 36 7-49 53-88 (90)
160 PRK13125 trpA tryptophan synth 62.7 15 0.00032 41.0 6.1 61 7-69 76-138 (244)
161 PF14520 HHH_5: Helix-hairpin- 62.2 12 0.00026 32.2 4.2 29 835-867 7-35 (60)
162 PF06695 Sm_multidrug_ex: Puta 60.6 14 0.00031 36.7 5.0 46 323-379 58-103 (121)
163 PHA01083 hypothetical protein 58.5 5.8 0.00013 40.4 1.8 77 444-522 19-106 (149)
164 TIGR00617 rpa1 replication fac 57.9 31 0.00068 43.7 8.5 71 976-1048 299-380 (608)
165 COG3390 Uncharacterized protei 56.6 51 0.0011 35.1 8.2 61 986-1048 47-110 (196)
166 PLN02532 asparagine-tRNA synth 55.8 21 0.00046 45.0 6.4 62 1004-1066 133-199 (633)
167 PRK07228 N-ethylammeline chlor 55.8 19 0.00041 43.6 6.0 66 2-69 55-147 (445)
168 TIGR01975 isoAsp_dipep isoaspa 55.2 31 0.00068 41.3 7.5 103 3-107 56-184 (389)
169 PF00633 HHH: Helix-hairpin-he 53.0 8.6 0.00019 28.7 1.5 18 834-851 12-29 (30)
170 PF04076 BOF: Bacterial OB fol 50.5 35 0.00076 33.0 5.6 68 984-1062 34-101 (103)
171 COG1031 Uncharacterized Fe-S o 49.3 9.6 0.00021 45.5 1.9 33 835-870 518-550 (560)
172 PF02721 DUF223: Domain of unk 47.7 38 0.00082 32.0 5.4 35 1009-1043 2-37 (95)
173 PRK10812 putative DNAse; Provi 47.7 47 0.001 37.6 7.0 60 4-66 2-65 (265)
174 cd04481 RPA1_DBD_B_like RPA1_D 47.5 1.7E+02 0.0037 28.0 10.0 64 989-1053 2-76 (106)
175 KOG3056|consensus 47.5 61 0.0013 39.9 8.1 62 987-1049 188-254 (578)
176 COG5176 MSL5 Splicing factor ( 47.0 8.4 0.00018 41.1 0.8 116 243-369 39-177 (269)
177 TIGR00010 hydrolase, TatD fami 44.6 54 0.0012 35.9 6.9 58 5-66 1-58 (252)
178 KOG2411|consensus 43.7 54 0.0012 39.7 6.8 79 984-1066 47-136 (628)
179 PRK13150 cytochrome c-type bio 42.9 1E+02 0.0022 32.3 7.8 56 984-1048 57-117 (159)
180 PF10391 DNA_pol_lambd_f: Fing 41.9 29 0.00062 29.3 3.1 38 835-878 4-41 (52)
181 PRK10425 DNase TatD; Provision 41.1 63 0.0014 36.4 6.8 60 5-67 1-61 (258)
182 COG2920 DsrC Dissimilatory sul 40.7 47 0.001 31.9 4.6 51 412-470 44-95 (111)
183 cd01295 AdeC Adenine deaminase 40.3 45 0.00097 40.3 5.8 62 2-67 8-74 (422)
184 cd01292 metallo-dependent_hydr 37.5 39 0.00084 36.8 4.4 66 5-70 1-90 (275)
185 PRK08402 replication factor A; 36.6 1.1E+02 0.0025 36.1 8.1 60 1008-1068 248-339 (355)
186 PRK09228 guanine deaminase; Pr 36.2 62 0.0013 39.2 6.1 66 3-70 70-164 (433)
187 TIGR00156 conserved hypothetic 35.9 61 0.0013 32.6 4.9 71 981-1062 54-124 (126)
188 PF02310 B12-binding: B12 bind 35.0 94 0.002 30.0 6.2 52 15-66 32-87 (121)
189 TIGR03631 bact_S13 30S ribosom 34.2 75 0.0016 31.3 5.2 49 827-884 9-57 (113)
190 KOG0555|consensus 34.1 63 0.0014 38.1 5.2 74 985-1062 124-202 (545)
191 smart00278 HhH1 Helix-hairpin- 33.9 31 0.00067 24.6 1.8 19 835-853 3-21 (26)
192 CHL00137 rps13 ribosomal prote 32.9 65 0.0014 32.2 4.5 48 827-883 11-58 (122)
193 PRK05179 rpsM 30S ribosomal pr 32.9 83 0.0018 31.4 5.3 48 827-883 11-58 (122)
194 CHL00200 trpA tryptophan synth 32.8 78 0.0017 35.8 5.8 48 22-70 107-154 (263)
195 TIGR03342 dsrC_tusE_dsvC sulfu 32.7 29 0.00063 33.9 2.0 31 412-453 41-71 (108)
196 cd05017 SIS_PGI_PMI_1 The memb 32.4 84 0.0018 30.7 5.3 38 21-64 57-94 (119)
197 PRK13165 cytochrome c-type bio 32.3 1.8E+02 0.004 30.5 7.8 56 984-1048 57-117 (160)
198 PRK06739 pyruvate kinase; Vali 31.6 6E+02 0.013 30.2 12.9 124 25-224 169-299 (352)
199 COG2426 Predicted membrane pro 31.6 38 0.00081 33.8 2.6 48 322-380 66-114 (142)
200 PRK06380 metal-dependent hydro 31.2 76 0.0016 38.1 5.8 19 2-20 53-71 (418)
201 PRK06687 chlorohydrolase; Vali 30.2 72 0.0016 38.3 5.3 66 3-70 58-152 (419)
202 COG3111 Periplasmic protein wi 30.1 1.4E+02 0.0031 29.7 6.2 72 981-1063 54-125 (128)
203 PRK10053 hypothetical protein; 29.7 87 0.0019 31.7 4.8 71 981-1062 58-128 (130)
204 COG0084 TatD Mg-dependent DNas 29.6 1.3E+02 0.0029 33.9 6.9 55 3-60 1-55 (256)
205 PF01817 CM_2: Chorismate muta 29.2 2.4E+02 0.0052 25.5 7.4 45 701-745 27-73 (81)
206 PF01120 Alpha_L_fucos: Alpha- 29.2 88 0.0019 36.8 5.7 47 19-65 89-156 (346)
207 COG4955 Uncharacterized protei 29.1 70 0.0015 36.3 4.4 72 587-692 231-309 (343)
208 COG0099 RpsM Ribosomal protein 28.7 51 0.0011 32.6 2.9 47 827-882 11-57 (121)
209 TIGR01501 MthylAspMutase methy 27.6 1.6E+02 0.0034 30.0 6.3 42 20-61 38-81 (134)
210 COG0159 TrpA Tryptophan syntha 27.6 1.1E+02 0.0023 34.8 5.6 30 37-66 97-128 (265)
211 TIGR02967 guan_deamin guanine 27.2 91 0.002 37.1 5.5 66 2-69 44-138 (401)
212 TIGR00573 dnaq exonuclease, DN 27.0 22 0.00048 38.8 0.2 28 78-105 188-215 (217)
213 PRK11508 sulfur transfer prote 26.7 93 0.002 30.5 4.3 16 411-426 41-56 (109)
214 PRK13111 trpA tryptophan synth 26.6 1.3E+02 0.0028 34.0 6.1 43 22-65 105-147 (258)
215 PF10925 DUF2680: Protein of u 26.5 1.4E+02 0.0031 26.0 5.0 35 712-746 14-49 (59)
216 PRK04053 rps13p 30S ribosomal 25.8 1.3E+02 0.0029 31.1 5.5 48 827-883 19-66 (149)
217 PLN02591 tryptophan synthase 25.5 1.3E+02 0.0029 33.8 6.0 26 36-61 80-107 (250)
218 PLN02433 uroporphyrinogen deca 25.5 6.3E+02 0.014 29.6 11.9 160 23-199 181-343 (345)
219 PF13384 HTH_23: Homeodomain-l 25.4 1E+02 0.0022 25.0 3.9 39 409-465 3-41 (50)
220 TIGR03628 arch_S11P archaeal r 25.3 52 0.0011 32.5 2.4 45 343-387 49-112 (114)
221 PRK08203 hydroxydechloroatrazi 25.3 97 0.0021 37.7 5.3 65 3-69 59-157 (451)
222 TIGR02844 spore_III_D sporulat 24.3 59 0.0013 30.1 2.4 38 407-461 2-39 (80)
223 KOG1653|consensus 24.1 1.2E+02 0.0026 31.6 4.7 54 1016-1069 105-168 (175)
224 cd01298 ATZ_TRZ_like TRZ/ATZ f 24.1 1.2E+02 0.0027 35.8 5.8 65 2-69 55-146 (411)
225 PTZ00134 40S ribosomal protein 24.0 73 0.0016 33.1 3.2 48 827-883 24-71 (154)
226 cd04476 RPA1_DBD_C RPA1_DBD_C: 23.6 2.6E+02 0.0057 29.0 7.5 62 1006-1067 69-153 (166)
227 COG2332 CcmE Cytochrome c-type 23.4 4.4E+02 0.0096 27.3 8.5 69 984-1062 51-120 (153)
228 TIGR01440 conserved hypothetic 23.3 2.9E+02 0.0062 29.1 7.2 75 125-204 16-97 (172)
229 cd02072 Glm_B12_BD B12 binding 23.3 2.2E+02 0.0048 28.7 6.4 49 20-68 36-89 (128)
230 PF08646 Rep_fac-A_C: Replicat 23.0 3.2E+02 0.0069 27.7 7.8 65 1006-1070 55-142 (146)
231 TIGR03128 RuMP_HxlA 3-hexulose 22.2 1.5E+02 0.0034 31.6 5.6 44 22-67 63-109 (206)
232 KOG0556|consensus 21.7 3.8E+02 0.0082 32.1 8.6 68 976-1048 71-149 (533)
233 COG2183 Tex Transcriptional ac 21.6 69 0.0015 41.1 3.0 53 834-891 510-563 (780)
234 PRK06038 N-ethylammeline chlor 21.4 1.4E+02 0.0031 36.1 5.6 60 3-66 55-141 (430)
235 COG0108 RibB 3,4-dihydroxy-2-b 21.2 9.2E+02 0.02 26.3 10.8 153 20-202 39-193 (203)
236 TIGR03629 arch_S13P archaeal r 21.1 90 0.002 32.1 3.2 27 827-853 15-41 (144)
237 PRK13690 hypothetical protein; 21.0 3.3E+02 0.0071 29.0 7.2 73 124-201 22-100 (184)
238 COG1038 PycA Pyruvate carboxyl 21.0 1.2E+02 0.0025 39.2 4.7 48 12-64 58-109 (1149)
239 PF03100 CcmE: CcmE; InterPro 20.9 4.5E+02 0.0098 26.4 8.2 68 984-1062 50-119 (131)
240 PLN02461 Probable pyruvate kin 20.8 8.8E+02 0.019 30.3 12.1 44 181-224 279-327 (511)
241 PRK10027 cryptic adenine deami 20.8 1.2E+02 0.0026 38.5 4.8 61 3-67 84-149 (588)
242 cd01303 GDEase Guanine deamina 20.7 1.9E+02 0.0041 35.0 6.5 65 3-69 65-159 (429)
243 PRK13254 cytochrome c-type bio 20.6 4.5E+02 0.0097 27.3 8.1 59 984-1047 51-109 (148)
244 PF00290 Trp_syntA: Tryptophan 20.5 1.4E+02 0.0031 33.7 5.0 41 23-64 104-144 (259)
245 PF06743 FAST_1: FAST kinase-l 20.4 1.3E+02 0.0028 26.9 3.8 56 727-783 10-65 (71)
246 PRK10657 isoaspartyl dipeptida 20.3 1.6E+02 0.0034 34.9 5.6 64 3-68 56-129 (388)
247 PTZ00129 40S ribosomal protein 20.2 76 0.0017 32.8 2.5 45 343-387 75-138 (149)
248 TIGR00640 acid_CoA_mut_C methy 20.1 2.6E+02 0.0056 28.3 6.2 43 18-60 37-81 (132)
249 PF12826 HHH_2: Helix-hairpin- 20.1 1.1E+02 0.0023 26.8 3.1 42 837-895 7-48 (64)
No 1
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=100.00 E-value=1e-289 Score=2686.18 Aligned_cols=1094 Identities=35% Similarity=0.587 Sum_probs=1033.7
Q ss_pred ccccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhCCCeeEeeeeeeecccccCCCCccE
Q psy9396 4 QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIENKKPSRL 83 (1149)
Q Consensus 4 ~fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~GIKpIiG~Ei~v~~~~~~~~~~hl 83 (1149)
+||||||||+||+|||+++|++||++|+++||+||||||||||||+++||++|+++|||||+|||+++.+.. ....+|+
T Consensus 2 ~fvhLhvhS~ySlLdg~~~i~~lv~~A~~~g~~alAlTDh~~m~Ga~~F~~~a~~~gIkPIiG~e~~v~~~~-~~~~~~l 80 (1107)
T PRK06920 2 KFVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPIIGLTASIFSEE-EEKSYPL 80 (1107)
T ss_pred CceeeecCcccchhccCCCHHHHHHHHHHCCCCEEEEEeCChHhHHHHHHHHHHHcCCCEeeeeEEEEecCC-CCCcccE
Confidence 499999999999999999999999999999999999999999999999999999999999999999997532 1235799
Q ss_pred EEEEcccHHHHHHHHHHHHHHHhhccCCcccccHHHHhccccCCCeEEEeCCCcchHHHHHhcCChHHHHHHHHHHHHhC
Q psy9396 84 LLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIF 163 (1149)
Q Consensus 84 llLAkN~~Gy~nL~kL~S~~~~~~~~~~~p~i~~e~L~~~~~~~glIiis~~~~g~i~~~l~~~~~~~a~~~~~~~~~~f 163 (1149)
+|||||++||+|||+|+|.+++++ +|++++++|.+ |++|||++|+|..|++.+++..++.+.|.+.+.+|.++|
T Consensus 81 ~LLAkn~~Gy~nL~kL~S~~~~~~----~p~i~~~~L~~--~~~gLi~ls~~~~g~i~~~l~~~~~~~a~~~~~~~~~~F 154 (1107)
T PRK06920 81 VLLAENEIGYQNLLKISSSIMTKS----KEGIPKKWLAH--YAKGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMF 154 (1107)
T ss_pred EEEeCCHHHHHHHHHHHHHHHhcC----CCCCCHHHHHh--hCCCCEEEeCCCcchHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 999999999999999999998764 59999999999 999999999999999999999999999999999999999
Q ss_pred C-CCeEEEEccCCCcchHHHHHHHHHHHHhcCCCEEEecCccccCccCchHHHHHHHHHcCCccccccccccCCcCCCCC
Q psy9396 164 P-DNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242 (1149)
Q Consensus 164 ~-~~~ylEi~~~~~~~~~~~n~~l~~lA~~~~iplVatnDvhyl~~eD~~~~~vL~aI~~g~~l~~~~~~~~~~~~~~~~ 242 (1149)
+ ++||+|++. .++++.+|+.++++|+++|+|+||||||||++++|+.+|++|.||++|++++++++....++++||+
T Consensus 155 g~~~~yle~~~--~~~~~~~~~~l~~la~~~~iplVatndvhyl~~eD~~~~~vl~~I~~g~~l~d~~~~~~~~~~~ylk 232 (1107)
T PRK06920 155 GNFYMSLQHHA--IQDELLLQEKLPEFSNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTDQYYLK 232 (1107)
T ss_pred CCCeEEEEecC--chhHHHHHHHHHHHHHHhCCCEEEeCCccccCHhHHHHHHHHHHHHcCCCcccccccccCCcccccC
Confidence 8 689998876 4578899999999999999999999999999999999999999999999999999877778899999
Q ss_pred CHHHHHHHhcChHHHHHHHHHHHHhccccccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhCCChhhhhhhhHH
Q psy9396 243 TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEIYKCEKLR 322 (1149)
Q Consensus 243 s~~em~~~f~~~~~a~~nt~~ia~~c~~~~~~~~~~lP~~~~p~~~~~~~~l~~l~~~gl~~r~~~~~~~~~~~~~~~~~ 322 (1149)
|++||.++|+++|+|++||.+||++|++++++++++||+|+.|++.++++||+++|++|+++||+.. .++
T Consensus 233 s~~Em~~~f~~~~eal~NT~~Ia~~c~~~l~~~~~~lP~f~~p~g~~~~~~L~~l~~~Gl~~Ry~~~----------~~~ 302 (1107)
T PRK06920 233 SSDEMEALFSHVPEAIYNTVEIAERCRVEIPFHVNQLPKFPVPSNETADMYLRRVCEEGLQKRYGTP----------KEV 302 (1107)
T ss_pred CHHHHHHHhcccHHHHHHHHHHHHhcceecccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCC----------cHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998531 257
Q ss_pred HHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCCcccCCCcchhHHHHHHHhcCCccCCCCCCCcceeccCCCCCCCC
Q psy9396 323 YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMP 402 (1149)
Q Consensus 323 ~~~Rl~~EL~vI~~~gf~~YFLiv~D~v~~ak~~gi~vGpGRGSaagSlVaY~LgIT~vDPl~~~LlFERFLnpeR~smP 402 (1149)
|++||+|||+||++|||+||||||||||+|||++||+||||||||||||||||||||+||||+|||||||||||||+|||
T Consensus 303 y~~RL~~EL~vI~~mGf~~YFLIV~D~i~~Ak~~gI~VGPGRGSaAGSLVaY~LgIT~VDPl~y~LlFERFLNpeR~smP 382 (1107)
T PRK06920 303 HINRLNHELNVISRMGFSDYFLIVWDFMKYAHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLP 382 (1107)
T ss_pred HHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHCCCEeCCCcchHHHHHHHHHhCCCccCccccCCcHHhhcCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeecCCCchHhHHHHHHHHhCcccEEEEEecccchhhhHHHHHHHhcCCCHHHHHHHHccCCCCCCCCcchHHHhhhC
Q psy9396 403 DFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482 (1149)
Q Consensus 403 DIDiDf~~~~R~~vi~yv~~kYG~~~Va~I~Tf~t~~ak~airdv~r~lg~~~~~~~~i~k~ip~~~~~~~~l~~a~~~~ 482 (1149)
|||||||++||++||+||++|||++|||||+|||||+||+||||||||||+|+.++|++||+||..++ +||++|++++
T Consensus 383 DIDiDF~~~rR~eVi~Yv~~kYG~~~VaqI~TfgT~~ak~AiRDv~Rvlg~~~~~~d~iak~ip~~~~--~tl~~a~~~~ 460 (1107)
T PRK06920 383 DIDIDFPDTRRDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG--ITLKDAYEES 460 (1107)
T ss_pred CcccccccccHHHHHHHHHHHhCcccEEEEeeehhhHHHHHHHHHHHHhCCCHHHHHHHHhcCCCcCC--CCHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999888 9999999999
Q ss_pred hHHHHHhhccHHHHHHHHHHHHcccccCCccccccEEEEcCCCCCccccceeeCCCCceEeeccccchhhcCCcceeccC
Q psy9396 483 PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLG 562 (1149)
Q Consensus 483 ~~l~~~~~~~~~~~~l~~~a~~leGl~r~~~~HaaGvvIs~~~l~~~~Pl~~~~~~~~~~tq~d~~~~e~~GLlK~D~LG 562 (1149)
|+|++++.+++.+++|+++|++|||+|||+|+||||||||++||+++|||+.++++ .++|||||+++|++|||||||||
T Consensus 461 ~~l~~~~~~~~~~~~l~~~A~~lEGlpR~~s~HAaGvVIs~~pL~~~vPl~~~~~~-~~vtQ~d~~~vE~~GLlK~DfLG 539 (1107)
T PRK06920 461 QSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQEGHND-VYVTQYPADALEELGLLKMDFLG 539 (1107)
T ss_pred hhhhhhcccCHHHHHHHHHHHHhcCCCCCCCcCCCEEEEECCccccccCeeECCCC-CEEecccCchHHHcCCceEEECC
Confidence 99999999999999999999999999999999999999999999999999998766 79999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCCcCCCCCCCCCHHHHHHHhcCCcCccccCCCHhHHHHHHhcCCCCHHHHHHHHhccCC
Q psy9396 563 LTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRP 642 (1149)
Q Consensus 563 l~~Ltii~~~~~~i~~~~~~~~~id~~~ip~dD~~t~~ll~~g~T~GvFQ~ES~gm~~~l~~~~P~~f~dl~a~~aL~RP 642 (1149)
|+|||+|++|+++|+++++ .++|+++||+||++||+||++|+|.|||||||+|||++|++++|++|+||+|++|||||
T Consensus 540 L~~LtiI~~~~~~I~~~~g--~~id~~~ipldD~~t~~Ll~~G~T~GVFQlES~Gmr~~L~~lkP~~feDiia~~ALyRP 617 (1107)
T PRK06920 540 LRNLTLLENIIKFIEQKTG--KEIDIRNLPLQDEKTFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRP 617 (1107)
T ss_pred CCchHHHHHHHHHHHhhhC--CccChhcCCCCCHHHHHHHhcCCCeeECCCCcHHHHHHHHHcCCCCHHHHHHHHhhcCC
Confidence 9999999999999999874 88999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccchHHHHHhhcC-CCCCCCCcchhhccccccCeehhHHHHHHHHHHHcCCCchhhhHHHHHhCCCChHHHHHHHHHH
Q psy9396 643 GPMDLIKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721 (1149)
Q Consensus 643 Gp~~~i~~yi~rk~g-~~v~y~~p~l~~iL~~TyGvivYQEQvM~ia~~~agfs~~eAD~lRram~KK~~~~m~~~~~~F 721 (1149)
|||++|++||+|||| ++++|+||.|++||++|||||||||||||||+++||||+||||.||||||||+.++|+++|++|
T Consensus 618 GPm~~i~~yi~rkhg~e~v~y~hp~L~~IL~~TyGVivYQEQVMqia~~~AGfslgeAD~LRrAm~KK~~~~m~~~r~~F 697 (1107)
T PRK06920 618 GPMEQIPTFIESKHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQERKHF 697 (1107)
T ss_pred cchhcchHHHHhcCCCCCCCCCCHHHHHHHHhhcCCceeHHHHHHHHHHHcCCCHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhcccCCChhhHHHHHHHHHHHHHHhhcChHHHHHHhcccccCChHHHHHHHHHHHhh
Q psy9396 722 QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKT 801 (1149)
Q Consensus 722 ~~ga~~~g~~~~~a~~i~~~i~~fa~YgFnksHa~aYa~~ay~~AylK~~yP~~f~~a~l~~~~~~~~k~~~~~~e~~~~ 801 (1149)
++||++||++++.|++||++|++||+||||||||+|||++||||||||||||+|||||+||+.+++.+|+..|+.||++
T Consensus 698 i~ga~~~G~~~~~a~~If~~i~~Fa~YgFnKSHa~AYa~iayqtAyLKahyP~eF~aall~~~~~~~~k~~~~i~e~~~- 776 (1107)
T PRK06920 698 VQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMTALLSSAIGNEDKIVQYIRETKR- 776 (1107)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhccHHHHHHHHhhcCcCCcHHHHHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeCCcccccCCCceeeeecCCCCCeEEecccccCCccHHHHHHHHHHHhcCCCCCHHHHHhhcccCCCCHHHHHHH
Q psy9396 802 CGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSL 881 (1149)
Q Consensus 802 ~gi~ilppdin~S~~~f~~~~~~~~~~~~I~~gl~~Ikgvg~~~~~~i~~~r~~g~f~~~~df~~r~~~~~~~~~~le~L 881 (1149)
+||+|+|||||+|.+.|+++ ++.||+||++|||||++++++|+++|++|||+|++|||.|++.+.+||+++|+|
T Consensus 777 ~gi~vlpPdin~S~~~f~~~------~~~Ir~gL~~Ikgvg~~~~~~Iv~~R~~g~f~s~~Df~~R~~~~~~nk~~le~L 850 (1107)
T PRK06920 777 KGFHVLPPSLQRSGYNFQIE------GNAIRYSLLSIRNIGMATVTALYEEREKKMFEDLFEFCLRMPSKFVTERNLEAF 850 (1107)
T ss_pred cCCEEeCCeeecCCCCcEEE------CCeeEechhhcCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhccCCCHHHHHHH
Confidence 99999999999999999997 468999999999999999999999999899999999999999999999999999
Q ss_pred HHcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccccccccCCCCCCChHHHHHHHHHHhCcccccc
Q psy9396 882 INSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEH 961 (1149)
Q Consensus 882 i~~Gafd~~~~~R~~ll~~l~~~~~~~~~~~~~~~~~~q~~L~~~~~~~~~~~~~~~~~~~~~e~l~~EkE~LG~yls~H 961 (1149)
|++||||+||.||++|+++++.+++.+.. ++...... ..+.+++.++|+..|++++|+|+||||+|+|
T Consensus 851 i~aGafD~~~~~R~~l~~~l~~~~~~~~~----------f~~~~~~~--~~~~~~~~~~~~~~e~l~~E~e~lG~yls~H 918 (1107)
T PRK06920 851 VWSGCFDDFGVSRTNLWKSLKGALEYANL----------ARDLGDAV--PKSKYVQGEELSFIEQLNKEKEVLGFYLSSY 918 (1107)
T ss_pred HHcCCcccccccHHHHHHHHHHHHHHHhh----------cccccccc--cccCCCCCCCCChhhHHHHHHHHHCcccCcC
Confidence 99999999999999999999988876532 11100010 1124567889999999999999999999999
Q ss_pred chHHHHHHHhhcccccccccCC--CCceEEEEEEEeeeEeeecCC-cEEEEEEEeCCceEEEEEchHHHHHHHhhccCCc
Q psy9396 962 IFCIYETEIRQFIPIYLSELKP--TYSCTVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENE 1038 (1149)
Q Consensus 962 Pl~~~~~~l~~~~~~~i~~l~~--~~~v~v~G~I~~vk~~~TK~G-~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~ 1038 (1149)
|++.|+..++.+..+++.++.. +..++++|+|+++|+++||+| +|||+++||.||.+|++|||++|++++..+.++.
T Consensus 919 Pl~~~~~~l~~~~~~~~~~l~~~~~~~v~v~g~i~~~~~~~tk~g~~maf~~leD~tg~~e~~vFp~~y~~~~~~l~~~~ 998 (1107)
T PRK06920 919 PTAQYVKLAKELEIPSLAQAMRHKKKVQRAIVYITSVKVIRTKKGQKMAFITFCDQNDEMEAVVFPETYIHFSDKLQEGA 998 (1107)
T ss_pred chHHHHHHHHHhCCcCHHHHhhcCCCEEEEEEEEEEeEeecCCCCCeEEEEEEeeCCCcEEEEECHHHHHHHHHHhccCC
Confidence 9999999999888778888753 237999999999999999999 8999999999999999999999999999999999
Q ss_pred EEEEEEEEEeeccCCceEEEEccccccHHHHH---hcCcEEEEEecCc---chHHHHHHHHHhcCCCCCccEEEEEEecC
Q psy9396 1039 LLIVSGKVLEDRFLKNIRINAEKIFDINVARI---LYGKKFSVMFNRT---FNISILKKILLRFKCKNGLPFVLYYCINK 1112 (1149)
Q Consensus 1039 ~v~v~G~v~~~~~~~~~~ii~~~i~~l~~~~~---~~~~~l~i~l~~~---~~l~~l~~il~~~~G~G~~~V~l~~~~~~ 1112 (1149)
+|+|+|+|+.+ ++..+++++++.+++++.. ...+.++|+++.. ..+.+|+++|.+|+| .+||++++. .+
T Consensus 999 ~~~v~G~v~~~--~~~~~~~~~~i~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~~~G--~~~v~~~~~-~~ 1073 (1107)
T PRK06920 999 IVLVDGTIELR--NHKLQWIVNGLYPLEEMDAYEEKKDASVYVKLPSQYEKKLLNQVTKILFDYSG--FAKVLIYYE-KE 1073 (1107)
T ss_pred EEEEEEEEEec--CCcEEEEEeecccHHHHhhhhhccCceEEEEeCCcCCHHHHHHHHHHHHhCCC--CceEEEEEc-CC
Confidence 99999999864 4678999999999988765 4456789998542 457899999999998 999999998 55
Q ss_pred ceeEEEEcCCcceecCcHHHHHHHHh-cCcccEEEE
Q psy9396 1113 SIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIE 1147 (1149)
Q Consensus 1113 ~~~~~~~l~~~~~v~~~~~l~~~L~~-~G~~~v~i~ 1147 (1149)
.+.+.++..|+|+++++++.+|+. +|.+||+++
T Consensus 1074 --~~~~~l~~~~~v~~~~~~~~~l~~~~g~~~v~~~ 1107 (1107)
T PRK06920 1074 --HKMVQLSRSLSIHPSEECLGALREIVGEENVVVK 1107 (1107)
T ss_pred --cEEEEcCCCcccCCCHHHHHHHHHhcCCcCEEeC
Confidence 467899999999999999999999 999999863
No 2
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated
Probab=100.00 E-value=1.9e-287 Score=2691.67 Aligned_cols=1114 Identities=46% Similarity=0.810 Sum_probs=1053.2
Q ss_pred ccccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhCCCeeEeeeeeeeccccc-----CC
Q psy9396 4 QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIE-----NK 78 (1149)
Q Consensus 4 ~fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~GIKpIiG~Ei~v~~~~~-----~~ 78 (1149)
+|+|||+||+||+|||+++|++||++|+++|++++||||||+|||+++|+++|++.|||||+|||+++.++.. .+
T Consensus 1 ~fv~LHvHS~ySlLdg~~~i~elv~~A~e~G~~avAiTDH~~l~g~~~f~~~a~~~gIkpIiG~Ei~~~~~~~~~~~~~~ 80 (1135)
T PRK05673 1 RFVHLHVHSEYSLLDGAAKIKPLVKKAAELGMPAVALTDHGNLFGAVEFYKAAKGAGIKPIIGCEAYVAPEKKDDVSGGG 80 (1135)
T ss_pred CcccceecccCchhhhcCCHHHHHHHHHHcCCCEEEEEcCCccHHHHHHHHHHHHcCCeEEEEEEEEecCCccccccccc
Confidence 4999999999999999999999999999999999999999999999999999999999999999999976421 13
Q ss_pred CCccEEEEEcccHHHHHHHHHHHHHHHhhccCCcccccHHHHhccccCCCeEEEeCCCcchHHHHHhcCChHHHHHHHHH
Q psy9396 79 KPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARR 158 (1149)
Q Consensus 79 ~~~hlllLAkN~~Gy~nL~kL~S~~~~~~~~~~~p~i~~e~L~~~~~~~glIiis~~~~g~i~~~l~~~~~~~a~~~~~~ 158 (1149)
..+|++|||||++||+|||+|+|.+++++++.++|++++++|.+ |++|||++|+|..|++.+.+..++.+.|.+++.+
T Consensus 81 ~~~~l~llAkn~~Gy~nL~kL~S~~~~~~~~~~~p~i~~~~L~~--~~~gli~ls~~~~g~~~~~~~~~~~~~a~~~~~~ 158 (1135)
T PRK05673 81 AYTHLTLLAKNETGYRNLFKLSSRAYLEGQYGYKPRIDREWLAE--HSEGLIALSGCPSGEVGTALLAGQYDEAEEAAAE 158 (1135)
T ss_pred CCCceEEEecCHHHHHHHHHHHHHHHhcCCCCCCcccCHHHHHc--cCCCcEEEeCCCcchHHHHHhcCCHHHHHHHHHH
Confidence 35799999999999999999999999998863479999999999 9999999999999999999999999999999999
Q ss_pred HHHhCCCCeEEEEccCCCcchHHHHHHHHHHHHhcCCCEEEecCccccCccCchHHHHHHHHHcCCccccccccccCCcC
Q psy9396 159 WSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKE 238 (1149)
Q Consensus 159 ~~~~f~~~~ylEi~~~~~~~~~~~n~~l~~lA~~~~iplVatnDvhyl~~eD~~~~~vL~aI~~g~~l~~~~~~~~~~~~ 238 (1149)
|.++|+++||+|+|+|+.+.+..+|+.++++|+++|+|+||||||||++++|+.+|++|.||++|++++++++....+++
T Consensus 159 ~~~if~~~~ylei~~~~~~~~~~~~~~l~~~a~~~~~p~Vatndv~Y~~~~d~~~~~vl~~i~~g~~~~~~~~~~~~~~~ 238 (1135)
T PRK05673 159 YQEIFGDRFYLELMRHGLPIERRVEHALLELAKELGLPLVATNDVHYLTPEDAEAHEALLCIAEGKTLDDPDRFRFYSPE 238 (1135)
T ss_pred HHHhcCCcEEEEEecCCChhHHHHHHHHHHHHHHhCCCEEEecCccccCHhHHHHHHHHHHHhCCCCccccchhccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987777889
Q ss_pred CCCCCHHHHHHHhcChHHHHHHHHHHHHhccccccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhCCChhhhhh
Q psy9396 239 QNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEIYKC 318 (1149)
Q Consensus 239 ~~~~s~~em~~~f~~~~~a~~nt~~ia~~c~~~~~~~~~~lP~~~~p~~~~~~~~l~~l~~~gl~~r~~~~~~~~~~~~~ 318 (1149)
+||+|++||.++|+++|+|++||.+||++|++++++++++||+|+.|++.++++||+++|++|+++||....+..
T Consensus 239 ~ylks~~em~~~f~~~~ea~~nt~~Ia~~c~~~~~~~~~~lP~f~~p~~~~~~~~L~~l~~~gl~~r~~~~~~~~----- 313 (1135)
T PRK05673 239 QYLKSAEEMRELFADLPEALDNTVEIAERCNVEVRLGKPFLPRFPTPDGETEEDYLRKEAKEGLEERLAFLFPDE----- 313 (1135)
T ss_pred cccCCHHHHHHHhhccHHHHHHHHHHHHhhheecccCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHhccCCCcc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999996543211
Q ss_pred hhHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCCcccCCCcchhHHHHHHHhcCCccCCCCCCCcceeccCCCC
Q psy9396 319 EKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNR 398 (1149)
Q Consensus 319 ~~~~~~~Rl~~EL~vI~~~gf~~YFLiv~D~v~~ak~~gi~vGpGRGSaagSlVaY~LgIT~vDPl~~~LlFERFLnpeR 398 (1149)
..++|++||+|||+||++|||+||||||||||+|||++||+||||||||||||||||||||+||||+|||||||||||||
T Consensus 314 ~~~~y~~Rl~~EL~vI~~mgf~~YFLIV~D~i~~Ak~~gI~vGpGRGSaAGSLVaY~LgIT~vDPl~y~LlFERFLNpeR 393 (1135)
T PRK05673 314 ERPEYVERLEYELDVIIQMGFPGYFLIVADFIQWAKDNGIPVGPGRGSGAGSLVAYALGITDLDPLRFGLLFERFLNPER 393 (1135)
T ss_pred hhHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHCCCeeCCCCchHHHHHHHHHhcCCccCccccCCCceeecCCCC
Confidence 13679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeecCCCchHhHHHHHHHHhCcccEEEEEecccchhhhHHHHHHHhcCCCHHHHHHHHccCCCCCCCCcchHHH
Q psy9396 399 ISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478 (1149)
Q Consensus 399 ~smPDIDiDf~~~~R~~vi~yv~~kYG~~~Va~I~Tf~t~~ak~airdv~r~lg~~~~~~~~i~k~ip~~~~~~~~l~~a 478 (1149)
+||||||||||++||++||+||++|||++|||||+|||||+||+||||||||||+|+.++|++||+||..++ +||++|
T Consensus 394 ~smPDIDiDf~~~rR~eVi~Yv~~kYG~~~VaqI~Tfgt~~ak~aiRDv~Rvlg~~~~~~d~iak~ip~~~~--~~l~~a 471 (1135)
T PRK05673 394 VSMPDFDIDFCQDRRDEVIRYVAEKYGRDAVAQIITFGTMKAKAVIRDVGRVLGMPYGFVDRITKLIPPDPG--ITLAKA 471 (1135)
T ss_pred CCCCCCCCcCccccHHHHHHHHHHHhCcccEEEEeehhhhHHHHHHHHHHHHhCCCHHHHHHHHhcCCCccC--CCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999887 999999
Q ss_pred hhhChHHHHHhhccHHHHHHHHHHHHcccccCCccccccEEEEcCCCCCccccceeeCCCCceEeeccccchhhcCCcce
Q psy9396 479 IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKF 558 (1149)
Q Consensus 479 ~~~~~~l~~~~~~~~~~~~l~~~a~~leGl~r~~~~HaaGvvIs~~~l~~~~Pl~~~~~~~~~~tq~d~~~~e~~GLlK~ 558 (1149)
++++|+|++++..++.+++|+++|++|||+|||+|+||||||||++||+++|||+.+++++.++|||||++||++|||||
T Consensus 472 ~~~~~~l~~~~~~~~~~~~l~~~A~~leGl~R~~s~HAaGvVIs~~~L~~~vPl~~~~~~~~~~tQ~d~~~~E~~GLlK~ 551 (1135)
T PRK05673 472 YEEEPELRELYESDPEVKRLIDMARKLEGLTRNAGVHAAGVVISPTPLTDFVPLYRDPDSGMPVTQFDMKDVEAAGLVKF 551 (1135)
T ss_pred HHhCHHHHhhhhcCHHHHHHHHHHHHhCCCCCCCCCCCCEEEEeCCcccccCCeeEcCCCCCEEEEeechhHhHCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999776658999999999999999999
Q ss_pred eccCCCcHHHHHHHHHHHHhhcCCCCCcCCCCCCCCCHHHHHHHhcCCcCccccCCCHhHHHHHHhcCCCCHHHHHHHHh
Q psy9396 559 DFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALIS 638 (1149)
Q Consensus 559 D~LGl~~Ltii~~~~~~i~~~~~~~~~id~~~ip~dD~~t~~ll~~g~T~GvFQ~ES~gm~~~l~~~~P~~f~dl~a~~a 638 (1149)
|||||+|||+|++|+++|+++++ .++|+++||+||++||+||++|+|.|||||||+|||++|++++|++|+||+|++|
T Consensus 552 DfLGL~~Lt~i~~~~~~i~~~~g--~~id~~~ipldD~~t~~ll~~g~T~GvFQlES~gmr~~l~~lkP~~feDiia~~A 629 (1135)
T PRK05673 552 DFLGLRTLTIIDDALKLIKKRRG--IDVDLEAIPLDDPKTYELLQRGETLGVFQLESRGMRDLLKRLKPDCFEDIIALVA 629 (1135)
T ss_pred eeCCCCcHHHHHHHHHHHHHccC--CCCChhccCCCcHHHHHHHhcCCcccCCccCCHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999999999874 8899999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccc--chHHHHHhhcC-CCCCCCCcchhhccccccCeehhHHHHHHHHHHHcCCCchhhhHHHHHhCCCChHHHH
Q psy9396 639 LYRPGPMD--LIKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715 (1149)
Q Consensus 639 L~RPGp~~--~i~~yi~rk~g-~~v~y~~p~l~~iL~~TyGvivYQEQvM~ia~~~agfs~~eAD~lRram~KK~~~~m~ 715 (1149)
|||||||+ ||++||+|||| ++|+|+||.|++||++|||||||||||||||+++||||+||||+||||||||+.++|+
T Consensus 630 LyRPGP~~~g~i~~yi~rk~g~e~v~y~hp~L~~IL~~TyGVivYQEQVMqia~~~agfslgeAD~lRrAmgKK~~~~m~ 709 (1135)
T PRK05673 630 LYRPGPMESGMIPNFIDRKHGREEIEYPHPELEPILKETYGIIVYQEQVMQIAQVLAGYSLGGADLLRRAMGKKKPEEMA 709 (1135)
T ss_pred hcCCCcccccchHHHHHhcCCCCCCCCCChhHHHHHhhhcCceehHHHHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHH
Confidence 99999999 99999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhhHHHHHHHHHHHHHHhhcChHHHHHHhcccccCChHHHHHHH
Q psy9396 716 EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILV 795 (1149)
Q Consensus 716 ~~~~~F~~ga~~~g~~~~~a~~i~~~i~~fa~YgFnksHa~aYa~~ay~~AylK~~yP~~f~~a~l~~~~~~~~k~~~~~ 795 (1149)
++|++|++||++||++++.|++||++|++||+||||||||+|||++||||||||||||+|||||+||+..++.+|+..|+
T Consensus 710 ~~r~~Fi~ga~~~g~~~~~a~~if~~i~~Fa~YgFNKSHa~aYa~iay~~AylKahyP~eF~aall~~~~~~~~k~~~~i 789 (1135)
T PRK05673 710 KQREIFVEGAKKNGIDEEAADAIFDLLEKFAGYGFNKSHAAAYALVSYQTAYLKAHYPAEFMAALLTSDMDNTDKVAVYL 789 (1135)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhhhcHHHHHHHHhccCcCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCeeeCCcccccCCCceeeeecCCCCCeEEecccccCCccHHHHHHHHHHHh-cCCCCCHHHHHhhcccCCCC
Q psy9396 796 KDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYIN 874 (1149)
Q Consensus 796 ~e~~~~~gi~ilppdin~S~~~f~~~~~~~~~~~~I~~gl~~Ikgvg~~~~~~i~~~r~-~g~f~~~~df~~r~~~~~~~ 874 (1149)
.||++ +||+|+|||||+|++.|+++ +++||+||++|||||++++++|+++|+ +|||+|++|||.|++.+.+|
T Consensus 790 ~e~~~-~gi~vl~pdin~S~~~f~~~------~~~I~~gL~~Ikgvg~~~~~~I~~~R~~~g~f~s~~Df~~R~~~~~~~ 862 (1135)
T PRK05673 790 DECRR-MGIKVLPPDVNESLYDFTVV------DGDIRYGLGAIKGVGEGAVEAIVEAREEGGPFKDLFDFCARVDLKKVN 862 (1135)
T ss_pred HHHHH-CCCeEeCCceeccCCccEEE------CCEEEechhhcCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHhccCCCC
Confidence 99999 99999999999999999997 468999999999999999999999998 68999999999999999999
Q ss_pred HHHHHHHHHcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC-CC--CcccccccccCCCCCCChHHHHHHHH
Q psy9396 875 RRIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKN-DD--NNNLKEYLNYVKVPSWSKKQELIEEK 951 (1149)
Q Consensus 875 ~~~le~Li~~Gafd~~~~~R~~ll~~l~~~~~~~~~~~~~~~~~~q~~L-~~--~~~~~~~~~~~~~~~~~~~e~l~~Ek 951 (1149)
|+++|+||++||||+||.||++|+++++.+++.+...++. +..+|.+| +. .......+.++..++|+..|+|.+|+
T Consensus 863 k~~le~Li~aGafd~~~~~R~~l~~~l~~~~~~~~~~~~~-~~~~q~~lf~~~~~~~~~~~~~~~~~~~~~~~e~l~~Ek 941 (1135)
T PRK05673 863 KRVLESLIKAGAFDSLGPNRAALLASLEDAVDAADQHKKA-EASGQFDLFGGLGEEPEDVEVSVPDVEEWDKKEKLAGER 941 (1135)
T ss_pred HHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHHHHHHH-HhcCCccccccccccccccCCCCCCCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999988877666 67788777 32 11111223567779999999999999
Q ss_pred HHhCccccccchHHHHHHHhhcccccccccCC---CCceEEEEEEEeeeEeeecCC-cEEEEEEEeCCceEEEEEchHHH
Q psy9396 952 KVLGFCLSEHIFCIYETEIRQFIPIYLSELKP---TYSCTVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLY 1027 (1149)
Q Consensus 952 E~LG~yls~HPl~~~~~~l~~~~~~~i~~l~~---~~~v~v~G~I~~vk~~~TK~G-~mafltleD~tg~ie~vvFp~~y 1027 (1149)
|+||||+|+|||+.|+..++.+..+++.++.. +..++++|+|+++++++||+| +|||++++|.||++|++|||++|
T Consensus 942 e~lG~yls~HPl~~~~~~~~~~~~~~~~~l~~~~~g~~V~v~G~I~~vk~~~TKkG~~mafltLeD~TG~iEvviFp~~y 1021 (1135)
T PRK05673 942 ETLGLYLSGHPLDGYEDELRRLRDTRLADLEPTEGGSVVTVAGLVVSVRRRVTKRGNKMAIVTLEDLSGRIEVMLFSEAL 1021 (1135)
T ss_pred HHhCcccCcCchHHHHHHHHHhCCcCHHHHhccccCceEEEEEEEEEEEecccCCCCeEEEEEEEeCCCcEEEEECHHHH
Confidence 99999999999999999999888778888753 348999999999999999999 89999999999999999999999
Q ss_pred HHHHhhccCCcEEEEEEEEEeeccCCceEEEEccccccHHHHHhcCcEEEEEecCc----chHHHHHHHHHhcCCCCCcc
Q psy9396 1028 EKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRT----FNISILKKILLRFKCKNGLP 1103 (1149)
Q Consensus 1028 ~~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~~~i~~l~~~~~~~~~~l~i~l~~~----~~l~~l~~il~~~~G~G~~~ 1103 (1149)
+++++.+++|.+|+|+|+|+.+ ++..+++++++.+++++.....+.|+|+++.. ..+.+|+++|.+|+| ++|
T Consensus 1022 e~~~~~L~~g~iV~V~GkVe~~--~~~~qlii~~I~~L~~~~~~~~~~l~i~~~~~~~~~~~~~~l~~~l~~~~G--~~~ 1097 (1135)
T PRK05673 1022 EKYRDLLEEDRIVVVKGQVSFD--DGGLRLTAREVMDLEEARAKYARPLRISLPDRQLTPQLLERLKQVLEPHRG--TSP 1097 (1135)
T ss_pred HHHHHHhccCCEEEEEEEEEec--CCeEEEEEeecccHHHHhhccCceEEEEecccccCHHHHHHHHHHHHhCCC--Cce
Confidence 9999999999999999999864 46799999999999987765567899999642 458899999999998 999
Q ss_pred EEEEEEecCceeEEEEcCCcceecCcHHHHHHHHh-cCc
Q psy9396 1104 FVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGL 1141 (1149)
Q Consensus 1104 V~l~~~~~~~~~~~~~l~~~~~v~~~~~l~~~L~~-~G~ 1141 (1149)
|++++. .++..+.+.++..|+|+++++++.+|+. +|.
T Consensus 1098 v~~~~~-~~~~~~~~~l~~~~~v~~~~~~~~~l~~~~g~ 1135 (1135)
T PRK05673 1098 VHLYLQ-DPDAEAELRLGDRWRVTPSDALLGDLKALLGV 1135 (1135)
T ss_pred EEEEEe-cCCceEEEEcCCCcccCCCHHHHHHHHHhhCC
Confidence 999998 5544568899999999999999999999 873
No 3
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=100.00 E-value=2.2e-287 Score=2681.21 Aligned_cols=1107 Identities=37% Similarity=0.625 Sum_probs=1037.2
Q ss_pred ccccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhCCCeeEeeeeeeecccc------cC
Q psy9396 4 QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI------EN 77 (1149)
Q Consensus 4 ~fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~GIKpIiG~Ei~v~~~~------~~ 77 (1149)
+|+|||+||.||+|||+++|+++|++|+++|++++||||||+|||+++|+++|++.|||||+|||+++.++. ..
T Consensus 2 ~fv~LHvHS~ySlLdg~~~i~elv~~A~~~G~~alAiTDh~~l~G~~~f~~~~~~~gIkpIiG~E~~v~~~~~~~~~~~~ 81 (1170)
T PRK07374 2 AFVPLHNHSDYSLLDGASQLPKMVERAKELGMPAIALTDHGVMYGAIELLKLCKGKGIKPIIGNEMYVINGSIDDPQPKK 81 (1170)
T ss_pred CcccccccCcCchhhccCCHHHHHHHHHHCCCCEEEEecCCchHHHHHHHHHHHHcCCeEEEEeEEEecCcccccccccc
Confidence 499999999999999999999999999999999999999999999999999999999999999999987532 11
Q ss_pred CCCccEEEEEcccHHHHHHHHHHHHHHHhhcc----CCcccccHHHHhccccCCCeEEEeCCCcchHHHHHhcCChHHHH
Q psy9396 78 KKPSRLLLLVKNNNGYLQLCELLSKAYIENIN----YGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAE 153 (1149)
Q Consensus 78 ~~~~hlllLAkN~~Gy~nL~kL~S~~~~~~~~----~~~p~i~~e~L~~~~~~~glIiis~~~~g~i~~~l~~~~~~~a~ 153 (1149)
...+|++|||||++||+|||+|+|.+++++++ +++|++++++|.+ |++|||++|+|..|++.+.+..++.+.|.
T Consensus 82 ~~~~~l~LLAkN~~Gy~nL~kL~S~a~~~~~~~~~~~~~Pri~~~~L~~--~~~gLi~ls~~~~g~~~~~l~~~~~~~a~ 159 (1170)
T PRK07374 82 EKRYHLVVLAKNATGYKNLVKLTTISHLNGMRGRGIFSRPCIDKELLKQ--YSEGLIVSTACLGGEIPQAILRGRPDVAR 159 (1170)
T ss_pred cccceEEEEEeCcHHHHHHHHHHHHHHHhcccccCcCCCCcCcHHHHHh--cCCCeEEEeCCccchHHHHHhcCCHHHHH
Confidence 23479999999999999999999999998742 2369999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCeEEEEccCCCcchHHHHHHHHHHHHhcCCCEEEecCccccCccCchHHHHHHHHHcCCccccccccc
Q psy9396 154 NFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIK 233 (1149)
Q Consensus 154 ~~~~~~~~~f~~~~ylEi~~~~~~~~~~~n~~l~~lA~~~~iplVatnDvhyl~~eD~~~~~vL~aI~~g~~l~~~~~~~ 233 (1149)
+.+.+|.++|+++||+|+|+|+.+++..+|+.++++|+++|+|+||||||||++++|+.+|++|.||++|++++++++..
T Consensus 160 ~~~~~~~~~fg~~~yleiq~~~~~~~~~~~~~l~~la~~~~iplVatndvhY~~~~D~~~~~vl~~i~~g~~l~d~~~~~ 239 (1170)
T PRK07374 160 DVAAWYKEVFGDDFYLEIQDHGSIEDRIVNVELVRIAKELGIKLIATNDAHYLSKNDVEAHDALLCVLTGKLISDEKRLR 239 (1170)
T ss_pred HHHHHHHHhcCCcEEEEecCCCChHHHHHHHHHHHHHHHhCCCEEEecCCcccCHhhHHHHHHHHHHHcCCccCcccccc
Confidence 99999999999899999999999999999999999999999999999999999999999999999999999999998755
Q ss_pred cCCcCCCCCCHHHHHHHhcC------hHHHHHHHHHHHHhccccccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHh
Q psy9396 234 KFTKEQNFKTQSEMIKLFYD------IPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLL 307 (1149)
Q Consensus 234 ~~~~~~~~~s~~em~~~f~~------~~~a~~nt~~ia~~c~~~~~~~~~~lP~~~~p~~~~~~~~l~~l~~~gl~~r~~ 307 (1149)
. +++.||+|++||.++|++ +|+|++||.+||++|++.+++++++||+|+.|++.++++||+++|++|+++||.
T Consensus 240 ~-~~~~ylks~~eM~~~f~~~~~~~~~~eal~NT~~Ia~~c~~~~~~~~~~lP~f~~p~g~~~~~~L~~l~~~Gl~~Ry~ 318 (1170)
T PRK07374 240 Y-TGTEYIKSEEEMLRLFRDHLDPEVIQEAIANTVEVAEKVEEYDILGTYRMPRFPIPEGHTAVSYLTEVTEQGLLKRLK 318 (1170)
T ss_pred C-CccccCCCHHHHHHHhhhccccccHHHHHHHHHHHHHHhhcccccCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 4 566799999999999987 689999999999999988888899999999999999999999999999999996
Q ss_pred hhCCChhhhhhhhHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCCcccCCCcchhHHHHHHHhcCCccCCCCCC
Q psy9396 308 NLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYN 387 (1149)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~Rl~~EL~vI~~~gf~~YFLiv~D~v~~ak~~gi~vGpGRGSaagSlVaY~LgIT~vDPl~~~ 387 (1149)
..... ...++|++||+|||+||++|||+||||||||||+|||++||+||||||||||||||||||||+||||+||
T Consensus 319 ~~~~~-----~~~~~y~~RL~~EL~vI~~mgf~~YFLIV~D~i~~Ak~~gI~vGPGRGSaAGSLVaY~LgIT~VDPl~y~ 393 (1170)
T PRK07374 319 LNSLD-----EIDENYKERLSYELKIIEQMGFPTYFLVVWDYIRFAREQGIPVGPGRGSAAGSLVAYALGITNIDPVKNG 393 (1170)
T ss_pred ccCCC-----cCcHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHCCCeeCCCCchHHHHHHHHHhcCCccCccccC
Confidence 42111 1236799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeccCCCCCCCCCceeecCCCchHhHHHHHHHHhCcccEEEEEecccchhhhHHHHHHHhcCCCHHHHHHHHccCCC
Q psy9396 388 LLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPF 467 (1149)
Q Consensus 388 LlFERFLnpeR~smPDIDiDf~~~~R~~vi~yv~~kYG~~~Va~I~Tf~t~~ak~airdv~r~lg~~~~~~~~i~k~ip~ 467 (1149)
|||||||||||+||||||||||++||++||+||++|||++|||||+|||||+||+||||||||||+|+.++|+++|+||.
T Consensus 394 LlFERFLNpeR~smPDIDiDf~~~rR~eVi~Yv~~kYG~~~VaqI~TfgT~~ak~aiRDv~Rvlg~~~~~~d~iak~ip~ 473 (1170)
T PRK07374 394 LLFERFLNPERKSMPDIDTDFCIERRGEVIDYVTRRYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGEADRLAKLIPV 473 (1170)
T ss_pred CchhhccCCCCCCCCCcccccccccHHHHHHHHHHHhCcccEEEEEehhhhHHHHHHHHHHHHhCCCHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcchHHHhhh---ChHHHHHhhccHHHHHHHHHHHHcccccCCccccccEEEEcCCCCCccccceeeCCCCceEee
Q psy9396 468 KPGKLITLSNAIKE---EPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQ 544 (1149)
Q Consensus 468 ~~~~~~~l~~a~~~---~~~l~~~~~~~~~~~~l~~~a~~leGl~r~~~~HaaGvvIs~~~l~~~~Pl~~~~~~~~~~tq 544 (1149)
.++..+||++++++ +|+|++++.+++.+++|+++|++|||+|||+|+||||||||++||+++|||+.++++ .++||
T Consensus 474 ~~~~~~tl~~a~~~~~~~~~l~~~~~~~~~~~~l~~~A~~LEGl~R~~s~HAaGvVIs~~pL~~~vPl~~~~~g-~~vtQ 552 (1170)
T PRK07374 474 VRGKPAKLKAMIGKESPSPEFREKYEKDPRVKKWVDMAMRIEGTNKTFGVHAAGVVIASDPLDELVPLQRNNDG-QVITQ 552 (1170)
T ss_pred cccccccHHHHhhhcccCHHHHHHhhcCHHHHHHHHHHHHhCCCCCcCCcCCCEEEEeCCCcccccCceECCCC-CEEEe
Confidence 87766899999987 889999999999999999999999999999999999999999999999999998766 58999
Q ss_pred ccccchhhcCCcceeccCCCcHHHHHHHHHHHHhhcCCCCCcCCCCCCCCCHHHHHHHhcCCcCccccCCCHhHHHHHHh
Q psy9396 545 YDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKE 624 (1149)
Q Consensus 545 ~d~~~~e~~GLlK~D~LGl~~Ltii~~~~~~i~~~~~~~~~id~~~ip~dD~~t~~ll~~g~T~GvFQ~ES~gm~~~l~~ 624 (1149)
|||+++|++||||||||||+|||+|++|+++|+++++ .+||+++||+||++||+||++|+|.|||||||+|||++|++
T Consensus 553 ~d~~~~E~~GLlK~DfLGLr~LtvI~~~~~~I~~~~g--~~id~~~IpldD~~t~~Ll~~G~T~GVFQlES~Gmr~~L~~ 630 (1170)
T PRK07374 553 YFMEDIESLGLLKMDFLGLKNLTMIEKTLELVEQSTG--ERIDPDNLPLDDEKTFELLARGDLEGIFQLESSGMRQVVRD 630 (1170)
T ss_pred ecchhHHHCCCceeeecCCCchHHHHHHHHHHHHhhC--CCcChhhcCCccHHHHHHHhCCCCccCCCCCcHHHHHHHHH
Confidence 9999999999999999999999999999999999874 88999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHhccCCCccc--chHHHHHhhcC-CCCCCCCcchhhccccccCeehhHHHHHHHHHHHcCCCchhhhH
Q psy9396 625 AKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADL 701 (1149)
Q Consensus 625 ~~P~~f~dl~a~~aL~RPGp~~--~i~~yi~rk~g-~~v~y~~p~l~~iL~~TyGvivYQEQvM~ia~~~agfs~~eAD~ 701 (1149)
++|++|+||+|++||||||||+ ||++||+|||| ++|+|+||.|++||++|||||||||||||||+++||||+||||+
T Consensus 631 lkP~~feDiia~~ALyRPGPm~~g~i~~yi~rk~g~e~i~y~hp~Le~IL~~TyGVivYQEQVMqia~~~AGfslgeAD~ 710 (1170)
T PRK07374 631 LKPSSLEDISSILALYRPGPLDAGLIPKFINRKHGREAIDFAHPLLEPILTETYGIMVYQEQIMKIAQDLAGYSLGQADL 710 (1170)
T ss_pred cCCCCHHHHHHHHHhcCCCcccccchHHHHHhcCCCCCCCCCChHHHHHhcCcCCeEeeHHHHHHHHHHHcCCCHHHHHH
Confidence 9999999999999999999998 99999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhhHHHHHHHHHHHHHHhhcChHHHHHHhc
Q psy9396 702 LRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781 (1149)
Q Consensus 702 lRram~KK~~~~m~~~~~~F~~ga~~~g~~~~~a~~i~~~i~~fa~YgFnksHa~aYa~~ay~~AylK~~yP~~f~~a~l 781 (1149)
||||||||+.++|+++|++|++||++||+++++|++||++|++||+||||||||+|||++||||||||||||+|||||+|
T Consensus 711 LRRAm~KKk~~~m~~~r~~Fi~ga~~~G~~~~~A~~if~~i~~Fa~YgFNKSHA~AYa~iaYqtAyLKahYP~eF~aAlL 790 (1170)
T PRK07374 711 LRRAMGKKKVSEMQKHRGIFVEGASKRGVDEKVADELFDQMVLFAEYCFNKSHSTAYGAVTYQTAYLKAHYPVAYMAALL 790 (1170)
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHhhcCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChHHHHHHHHHHHhhCCCeeeCCcccccCCCceeeeecCCCCCeEEecccccCCccHHHHHHHHHHHh-cCCCCC
Q psy9396 782 SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERK-FGFFTN 860 (1149)
Q Consensus 782 ~~~~~~~~k~~~~~~e~~~~~gi~ilppdin~S~~~f~~~~~~~~~~~~I~~gl~~Ikgvg~~~~~~i~~~r~-~g~f~~ 860 (1149)
|+..++++|+..|+.||++ +||+|+|||||+|.+.|+++ +++||+||++|||||+.++++|+++|+ +|||+|
T Consensus 791 s~~~~~~~k~~~~i~Eak~-~GI~vlpPdIN~S~~~f~~~------~~~Ir~GL~aIkgvg~~~~~~Iv~~R~~~g~f~s 863 (1170)
T PRK07374 791 TVNAGSSDKVQRYISNCNS-MGIEVMPPDINRSGIDFTPK------GNRILFGLSAVKNLGDGAIRNIIAARDSDGPFKS 863 (1170)
T ss_pred hcCCCCchHHHHHHHHHHH-CCCEEeCCceecCCCCcEEE------CCEEEechhhcCCCCHHHHHHHHHHHHhCCCCCC
Confidence 9999999999999999999 99999999999999999997 468999999999999999999999998 799999
Q ss_pred HHHHHhhcccCCCCHHHHHHHHHcCCCCCcc--hhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC-CCC--cc---c---
Q psy9396 861 LFDFTKRIDKKYINRRIINSLINSGAFDCFN--EKRYMLVASIDVALKNAEKTKKFINQLSLFKN-DDN--NN---L--- 929 (1149)
Q Consensus 861 ~~df~~r~~~~~~~~~~le~Li~~Gafd~~~--~~R~~ll~~l~~~~~~~~~~~~~~~~~~q~~L-~~~--~~---~--- 929 (1149)
++|||+|++.+.+||+++|+||++||||+|| .||++|+++++.+++++...++. +.++|.+| +.. .. .
T Consensus 864 ~~Df~~R~~~~~~nk~~le~LI~aGafD~~~~~~~R~~ll~~l~~~~~~~~~~~~~-~~~~q~~lf~~~~~~~~~~~~~~ 942 (1170)
T PRK07374 864 LADLCDRLPSNVLNRRSLESLIHCGALDAFSPNANRAQLIADLDLVLDWASSRARD-RASGQGNLFDLLAGSEEEASNDL 942 (1170)
T ss_pred HHHHHHHhccccCCHHHHHHHHHcCcccccCCcCcHHHHHHHHHHHHHHHHHHHHh-hhccCcCcccccccccccccccc
Confidence 9999999999999999999999999999999 89999999999999998877666 66788777 311 10 0
Q ss_pred ccccccCCCCCCChHHHHHHHHHHhCccccccchHHHHHHHhhcccccccccCC---CCceEEEEEEEeeeEeeecCC-c
Q psy9396 930 KEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKP---TYSCTVSGIITELKLKTTYRG-K 1005 (1149)
Q Consensus 930 ~~~~~~~~~~~~~~~e~l~~EkE~LG~yls~HPl~~~~~~l~~~~~~~i~~l~~---~~~v~v~G~I~~vk~~~TK~G-~ 1005 (1149)
...++++.+++|+..|+|.+|+|+||||+|+||++.|+..++.+..++++++.. +..++++|+|+++|+++||+| +
T Consensus 943 ~~~~~~~~~~~~~~~e~l~~Eke~lG~yls~HPl~~~~~~~~~~~~~~~~~l~~~~~~~~v~v~g~i~~~k~~~Tk~G~~ 1022 (1170)
T PRK07374 943 SSAPKAAPVPDYPPTEKLKLEKELLGFYLSDHPLKQLTEPAKLLAPISLSSLEEQPDKAKVSAIAMIPEMKQVTTRKGDR 1022 (1170)
T ss_pred ccCCCCCCCCCCChhhHHHHHHHHhCcccCcCchHHHHHHHHHhCCcCHHHHhcccCCCEEEEEEEEEEeEecccCCCCE
Confidence 012346778999999999999999999999999999999999888778888752 337999999999999999999 8
Q ss_pred EEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeeccCCceEEEEccccccHHHHHhcCcEEEEEecCc--
Q psy9396 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRT-- 1083 (1149)
Q Consensus 1006 mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~~~i~~l~~~~~~~~~~l~i~l~~~-- 1083 (1149)
|||+++||.||.+|++|||++|++++..+.++.+++|+|+|+.+ ++..+++++++.+++++. .++|+++..
T Consensus 1023 maf~~leD~tg~~e~vvFp~~y~~~~~~l~~~~~~~v~g~v~~~--~~~~~~~~~~i~~l~~~~-----~~~i~~~~~~~ 1095 (1170)
T PRK07374 1023 MAILQLEDLTGSCEAVVFPKSYERLSDHLMTDTRLLVWAKVDRR--DDRVQLIIDDCREIDDLR-----LLLVELDPDQA 1095 (1170)
T ss_pred EEEEEEEECCCCEEEEECHHHHHHHHHHhccCCEEEEEEEEEec--CCeEEEEEeeeecHhhCc-----EEEEEEccccc
Confidence 99999999999999999999999999999999999999999864 367899999999997643 688888533
Q ss_pred ---chHHHHHHHHHhcCCCC------CccEEEEEEecCceeEEEEcCCcceecCcHHHHHHHHh
Q psy9396 1084 ---FNISILKKILLRFKCKN------GLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN 1138 (1149)
Q Consensus 1084 ---~~l~~l~~il~~~~G~G------~~~V~l~~~~~~~~~~~~~l~~~~~v~~~~~l~~~L~~ 1138 (1149)
..+.+|+++|.+|+| | .+||++++. .....+.+.++..|+|+++++++.+|+.
T Consensus 1096 ~~~~~~~~l~~~l~~~~G-g~~~~~~~~~v~~~~~-~~~~~~~~~l~~~~~v~~~~~~~~~l~~ 1157 (1170)
T PRK07374 1096 SDIRVQHKLRECLQKHRP-ERDELGVKIPVVAAVR-NGNSVRYVRLGHQFCVKDAQAAVKALQQ 1157 (1170)
T ss_pred cchHHHHHHHHHHHhCCC-CCcCCCCCeeEEEEEe-cCCceEEEEcCCCcccCCCHHHHHHHHh
Confidence 457899999999997 6 799999998 5433457899999999999999999996
No 4
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed
Probab=100.00 E-value=1.5e-286 Score=2675.68 Aligned_cols=1110 Identities=40% Similarity=0.680 Sum_probs=1048.9
Q ss_pred CCCccccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhCCCeeEeeeeeeeccccc----
Q psy9396 1 MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIE---- 76 (1149)
Q Consensus 1 m~~~fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~GIKpIiG~Ei~v~~~~~---- 76 (1149)
|+++|+|||+||.||++||+++|+++|++|+++|++++|||||++|||+++|+++|++.|||||+|||+++.++..
T Consensus 1 ~mm~fvdLHvHT~yS~ldg~~~~~elv~~A~e~G~~avAITDH~~~~g~~~f~~~a~~~gIkpIiG~Ei~~~~~~~~~~~ 80 (1151)
T PRK06826 1 MKMSFVHLHVHTEYSLLDGSARIKDLIKRAKELGMDSIAITDHGVMYGVVDFYKAAKKQGIKPIIGCEVYVAPRSRFDKE 80 (1151)
T ss_pred CCCcceeccccccCChhhhcCCHHHHHHHHHHCCCCEEEEecCCchHhHHHHHHHHHhCCCEEEEEEEEEecCCcccccc
Confidence 6678999999999999999999999999999999999999999999999999999999999999999999876421
Q ss_pred ---CCCCccEEEEEcccHHHHHHHHHHHHHHHhhccCCcccccHHHHhccccCCCeEEEeCCCcchHHHHHhcCChHHHH
Q psy9396 77 ---NKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAE 153 (1149)
Q Consensus 77 ---~~~~~hlllLAkN~~Gy~nL~kL~S~~~~~~~~~~~p~i~~e~L~~~~~~~glIiis~~~~g~i~~~l~~~~~~~a~ 153 (1149)
....+|++|||||++||+|||+|+|.++++++++ +|++++++|.+ |++|||++|+|..|++.+.+..++.+.|+
T Consensus 81 ~~~~~~~~~l~lLAkn~~Gy~nL~kL~S~a~~~~~~~-~pri~~~~L~~--~~~gLi~ls~~~~g~~~~~l~~~~~~~a~ 157 (1151)
T PRK06826 81 PDIDNETYHLVLLAKNETGYKNLMKIVSKAFTEGFYY-KPRVDHELLKE--HSEGLIALSACLAGEVPRYILKGNYEKAK 157 (1151)
T ss_pred ccccCCCceEEEEEcCcHHHHHHHHHHHHHhccCCcC-CccCCHHHHHh--hCCCCEEEcCCCCchHHHHHhCCCHHHHH
Confidence 1234699999999999999999999999988765 69999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHhCC-CCeEEEEccCCCcchHHHHHHHHHHHHhcCCCEEEecCccccCccCchHHHHHHHHHcCCcccccccc
Q psy9396 154 NFARRWSKIFP-DNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRI 232 (1149)
Q Consensus 154 ~~~~~~~~~f~-~~~ylEi~~~~~~~~~~~n~~l~~lA~~~~iplVatnDvhyl~~eD~~~~~vL~aI~~g~~l~~~~~~ 232 (1149)
+++.+|.++|+ ++||+|+|+|+.+++..+|..++++|+++++|+||||||||++++|+.+|++|.||++|.++++++|.
T Consensus 158 ~~~~~~~~~fg~~~~ylel~~~~~~~~~~~~~~l~~la~~~~iplVatndv~y~~~~D~~~~~vl~~i~~g~~~~~~~r~ 237 (1151)
T PRK06826 158 EAALFYKDIFGKENFYLELQDHGIPEQRKVNEELIKLSKELGIPLVATNDVHYIRKEDAKAHDVLLCIQTGKTVDDENRM 237 (1151)
T ss_pred HHHHHHHHhcCCCcEEEEEecCCChHHHHHHHHHHHHHHHhCCCeEEcccccccCHHHHHHHHHHHHHhcCCcccccccc
Confidence 99999999997 79999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccCCcCCCCCCHHHHHHHhcChHHHHHHHHHHHHhccccccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhCCC
Q psy9396 233 KKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKD 312 (1149)
Q Consensus 233 ~~~~~~~~~~s~~em~~~f~~~~~a~~nt~~ia~~c~~~~~~~~~~lP~~~~p~~~~~~~~l~~l~~~gl~~r~~~~~~~ 312 (1149)
...++++||+|++||.++|+++|+|++||.+||++|++++++++++||+|+.|++.++++||+++|++|+++||...
T Consensus 238 ~~~~~~~ylks~~em~~~f~~~~eal~NT~~Ia~~c~~~l~~~~~~lP~f~~p~~~~~~~~L~~l~~~gl~~ry~~~--- 314 (1151)
T PRK06826 238 RFPSDEFYLKSPEEMYELFSYVPEALENTVKIAERCNVEFEFGKSKLPKFPLPEGYDPYEYLRELCYEGLKKRYPNP--- 314 (1151)
T ss_pred ccCCccCccCCHHHHHHHhhccHHHHHHHHHHHHhcccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHccCC---
Confidence 77778999999999999999999999999999999999999999999999999999999999999999999998531
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCCcccCCCcchhHHHHHHHhcCCccCCCCCCCccee
Q psy9396 313 PEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFER 392 (1149)
Q Consensus 313 ~~~~~~~~~~~~~Rl~~EL~vI~~~gf~~YFLiv~D~v~~ak~~gi~vGpGRGSaagSlVaY~LgIT~vDPl~~~LlFER 392 (1149)
.++|++||+|||+||++|||+||||||||||+|||++||+||||||||||||||||||||+||||+|||||||
T Consensus 315 -------~~~~~~RL~~EL~vI~~mgf~~YFLIV~D~i~~Ak~~gI~vGpGRGSaAGSLVaY~LgIT~VDPl~y~LlFER 387 (1151)
T PRK06826 315 -------SEELIERLEYELSVIKQMGYVDYFLIVWDFIRFARENGIMVGPGRGSAAGSLVAYTLGITKIDPIKYNLLFER 387 (1151)
T ss_pred -------cHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHCCCeeCCCcccHHHHHHHHHhCCCccCccccCCCeee
Confidence 2579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCceeecCCCchHhHHHHHHHHhCcccEEEEEecccchhhhHHHHHHHhcCCCHHHHHHHHccCCCCCCCC
Q psy9396 393 FLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKL 472 (1149)
Q Consensus 393 FLnpeR~smPDIDiDf~~~~R~~vi~yv~~kYG~~~Va~I~Tf~t~~ak~airdv~r~lg~~~~~~~~i~k~ip~~~~~~ 472 (1149)
||||||+||||||||||++||++||+||++|||++|||||+|||||+||+|+||||||||+|+.++|++||+||..++
T Consensus 388 FLNpeR~smPDIDiDf~~~rR~eVi~Yv~~kYG~~~VaqI~TfgT~~ak~AirDv~Rvlg~~~~~~d~iak~ip~~~~-- 465 (1151)
T PRK06826 388 FLNPERVSMPDIDIDFCYERRQEVIDYVVEKYGKDRVAQIITFGTMAARAAIRDVGRALNYPYAEVDRIAKMIPTELG-- 465 (1151)
T ss_pred ecCCCCCCCCCeeccCccccHHHHHHHHHHHhCccCEEEEEehhhhHHHHHHHHHHHHhCCCHHHHHHHHhcCCCccC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cchHHHhhhChHHHHHhhccHHHHHHHHHHHHcccccCCccccccEEEEcCCCCCccccceeeCCCCceEeeccccchhh
Q psy9396 473 ITLSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEE 552 (1149)
Q Consensus 473 ~~l~~a~~~~~~l~~~~~~~~~~~~l~~~a~~leGl~r~~~~HaaGvvIs~~~l~~~~Pl~~~~~~~~~~tq~d~~~~e~ 552 (1149)
+|+++|++++|+|++++.+++.+++|+++|++|||+|||+|+|||||||||+||+++|||+. .++ .++|||||++||+
T Consensus 466 ~~l~~a~~~~~~l~~~~~~~~~~~~l~~~A~~leGl~R~~s~HAaGvVIs~~~L~~~vPl~~-~~~-~~~tQ~d~~~~E~ 543 (1151)
T PRK06826 466 ITIDKALELNPELKEAYENDERVRELIDTARALEGLPRHASTHAAGVVISSEPLVEYVPLQK-NDG-SIVTQFTMTTLEE 543 (1151)
T ss_pred CCHHHHHhhCHHHHhhhhcCHHHHHHHHHHHHhCCCCCCCCCCCCEEEEeCCccccccCcEE-CCC-CEEEEecCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 444 7999999999999
Q ss_pred cCCcceeccCCCcHHHHHHHHHHHHhhcCCCCCcCCCCCCCCCHHHHHHHhcCCcCccccCCCHhHHHHHHhcCCCCHHH
Q psy9396 553 IGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEE 632 (1149)
Q Consensus 553 ~GLlK~D~LGl~~Ltii~~~~~~i~~~~~~~~~id~~~ip~dD~~t~~ll~~g~T~GvFQ~ES~gm~~~l~~~~P~~f~d 632 (1149)
+||||||||||+|||+|++|+++|+++++ .++|+++||+||++||+||++|+|.|||||||+|||++|++++|++|+|
T Consensus 544 ~GLlK~DfLGL~~LtiI~~~~~~i~~~~g--~~id~~~IpldD~~t~~ll~~g~T~GVFQlES~Gmr~~L~~lkP~~feD 621 (1151)
T PRK06826 544 LGLLKMDFLGLRTLTVIRDAVDLIKKNRG--IEIDLDKIDYDDKKVYKMIGEGKTVGVFQLESAGMRSFMKELKPDSLED 621 (1151)
T ss_pred CCCceEEECCCCchHHHHHHHHHHHHhhC--CCcChhccCCCCHHHHHHHhcCCcccCCCcccHHHHHHHHHcCCCCHHH
Confidence 99999999999999999999999999774 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCcccchHHHHHhhcC-CCCCCCCcchhhccccccCeehhHHHHHHHHHHHcCCCchhhhHHHHHhCCCCh
Q psy9396 633 IIALISLYRPGPMDLIKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKT 711 (1149)
Q Consensus 633 l~a~~aL~RPGp~~~i~~yi~rk~g-~~v~y~~p~l~~iL~~TyGvivYQEQvM~ia~~~agfs~~eAD~lRram~KK~~ 711 (1149)
|+|++||||||||++|++||+|||| ++|+|+||.|++||++|||||||||||||||+++||||+||||+||||||||+.
T Consensus 622 iia~~ALyRPGPm~~i~~yi~rk~g~e~i~y~hp~le~IL~~TyGVivYQEQVMqia~~~aGfslgeAD~LRrAm~KK~~ 701 (1151)
T PRK06826 622 IIAGISLYRPGPMDSIPRYIKNKNNPEKIEYLHPKLEPILKVTYGCIVYQEQVMQIVRDLAGYSMGRSDLVRRAMSKKKH 701 (1151)
T ss_pred HHHHHhccCCCcccchHHHHHhcCCCCCCCCCChhHHHHhCccCcEEeeHHHHHHHHHHHcCCCHHHHHHHHHHhcccch
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH--------HHHcCCCHHHHHHHHHHHHHhcccCCChhhHHHHHHHHHHHHHHhhcChHHHHHHhccc
Q psy9396 712 SEMIEHRKFFQNG--------AIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSL 783 (1149)
Q Consensus 712 ~~m~~~~~~F~~g--------a~~~g~~~~~a~~i~~~i~~fa~YgFnksHa~aYa~~ay~~AylK~~yP~~f~~a~l~~ 783 (1149)
++|+++|++|++| |.+||++++.|++||++|++||+||||||||+|||++||||||||||||+|||||+||+
T Consensus 702 ~~m~~~r~~Fi~g~~~~~~~~a~~~G~~~~~a~~if~~i~~Fa~YgFNKSHA~AYa~iaYqtAyLKahyP~eF~aalLs~ 781 (1151)
T PRK06826 702 DVMEEERKNFIYGIVDEGGPGCIRNGIDEETANKIFDSMMDFASYAFNKSHAAAYAVVAYQTAYLKRYYPVEFMAALLNS 781 (1151)
T ss_pred hHHHHHHHHHhcCCchhhHHHHHHcCCCHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhh
Confidence 9999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHhhCCCeeeCCcccccCCCceeeeecCCCCCeEEecccccCCccHHHHHHHHHHHh-cCCCCCHH
Q psy9396 784 SMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERK-FGFFTNLF 862 (1149)
Q Consensus 784 ~~~~~~k~~~~~~e~~~~~gi~ilppdin~S~~~f~~~~~~~~~~~~I~~gl~~Ikgvg~~~~~~i~~~r~-~g~f~~~~ 862 (1149)
.+++.+|+..|+.||++ +||+|+|||||+|.+.|+++ +++||+||++|||||+.++++|+++|+ +|||+|++
T Consensus 782 ~~~~~~k~~~~i~E~k~-~gi~vlpPdIN~S~~~f~v~------~~~Ir~gL~aIkgvg~~~~~~Iv~~R~~~g~f~s~~ 854 (1151)
T PRK06826 782 VMGNSDKVAFYIEECRR-LGIEVLPPDINESYSKFTVE------GDKIRFGLAAVKNVGENAIDSIVEEREKKGKFKSLV 854 (1151)
T ss_pred ccCChHHHHHHHHHHHH-CCCEEeCCceecCCCCcEEE------CCEEEechhhcCCCCHHHHHHHHHHHHhCCCCCCHH
Confidence 99999999999999999 99999999999999999997 468999999999999999999999998 69999999
Q ss_pred HHHhhcccCCCCHHHHHHHHHcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC-CCCcc---cccccccCCC
Q psy9396 863 DFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKN-DDNNN---LKEYLNYVKV 938 (1149)
Q Consensus 863 df~~r~~~~~~~~~~le~Li~~Gafd~~~~~R~~ll~~l~~~~~~~~~~~~~~~~~~q~~L-~~~~~---~~~~~~~~~~ 938 (1149)
|||.|++.+.+||+++|+||++||||+||.||++|+++++.+++.+++.++. +.++|.+| +.... ....++++..
T Consensus 855 Df~~R~~~~~~nk~~le~Li~aGafD~~~~~R~~ll~~l~~~~~~~~~~~~~-~~~~q~~lf~~~~~~~~~~~~~~~~~~ 933 (1151)
T PRK06826 855 DFCERVDTSQINKRAVESLIKAGAFDSLGVYRSQLLAVYEKILDSISKQRKK-NIEGQISLFDLIGEEEESSLEIKYPDI 933 (1151)
T ss_pred HHHHHhcccCCCHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHHHHHH-hhccccccccccccccccccccCCCCC
Confidence 9999999999999999999999999999999999999999999988877666 66788777 32111 1112345678
Q ss_pred CCCChHHHHHHHHHHhCccccccchHHHHHHHhhcccccccccC------------CCCceEEEEEEEeeeEeeecCC-c
Q psy9396 939 PSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELK------------PTYSCTVSGIITELKLKTTYRG-K 1005 (1149)
Q Consensus 939 ~~~~~~e~l~~EkE~LG~yls~HPl~~~~~~l~~~~~~~i~~l~------------~~~~v~v~G~I~~vk~~~TK~G-~ 1005 (1149)
++|+..|+|.+|+|+||||+|+||++.|+..++.+..++++++. .+..++++|+|+++|+++||+| +
T Consensus 934 ~~~~~~e~l~~Eke~lG~yls~HPl~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~v~g~i~~~~~~~tk~G~~ 1013 (1151)
T PRK06826 934 KEFDKKELLAMEKEMLGLYISGHPLEEYEETLKKQTSATISDIISDEEEDGESKLKDGDKVIIGGIITEVKRKTTRNNEM 1013 (1151)
T ss_pred CCCChhHHHHHHHHHhCCccCCCchHHHHHHHHHcCCcCHHHHhhhccccccccccCCcEEEEEEEEEEeEeeccCCCCe
Confidence 99999999999999999999999999999999988777788772 2237999999999999999999 8
Q ss_pred EEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeeccCCceEEEEccccccHHHHHhcCcEEEEEecCc--
Q psy9396 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRT-- 1083 (1149)
Q Consensus 1006 mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~~~i~~l~~~~~~~~~~l~i~l~~~-- 1083 (1149)
|||+++||.+|.+|++|||++|++++..++.+.+|+|+|+|+.++ ++..+++++++.++... ..+.++|+++..
T Consensus 1014 maf~~leD~~g~~e~~vfp~~~~~~~~~l~~~~~~~v~g~v~~~~-~~~~~~~~~~~~~l~~~---~~~~~~i~~~~~~~ 1089 (1151)
T PRK06826 1014 MAFLTLEDLYGTVEVIVFPKVYEKYRSLLNEDNIVLIKGRVSLRE-DEEPKLICEEIEPLVIN---SEKKLYLRVEDKKD 1089 (1151)
T ss_pred EEEEEEEECCCcEEEEECHHHHHHHHHHhccCCEEEEEEEEEecC-CCceEEEEeeeecHhhC---cCCeEEEEeccccc
Confidence 999999999999999999999999999999999999999998542 45689999999999762 356789998642
Q ss_pred --chHHHHHHHHHhcCCCCCccEEEEEEecCceeEEEEcCCcceecCcHHHHHHHHh-cCcccEEE
Q psy9396 1084 --FNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAII 1146 (1149)
Q Consensus 1084 --~~l~~l~~il~~~~G~G~~~V~l~~~~~~~~~~~~~l~~~~~v~~~~~l~~~L~~-~G~~~v~i 1146 (1149)
..+.+|+++|.+|+| .+||++++. .+ .+.++++..|+|+++++++.+|.. +|.++|.+
T Consensus 1090 ~~~~~~~l~~~l~~~~G--~~~v~~~~~-~~--~~~~~l~~~~~v~~~~~~~~~l~~~~g~~~~~~ 1150 (1151)
T PRK06826 1090 IKLKLKELKEILKQYPG--NTPVYLYTE-KE--RKKFKLDRELWVNLSPELINELKELLGEENVKV 1150 (1151)
T ss_pred CHHHHHHHHHHHHhCCC--CceEEEEEc-CC--cEEEEcCCCcccCCCHHHHHHHHHhcCCCCEEE
Confidence 458899999999998 999999998 55 477899999999999999999999 99999865
No 5
>COG0587 DnaE DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.8e-286 Score=2631.46 Aligned_cols=1117 Identities=45% Similarity=0.744 Sum_probs=1029.2
Q ss_pred CccccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhCCCeeEeeeeeeeccccc--CCCC
Q psy9396 3 PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIE--NKKP 80 (1149)
Q Consensus 3 ~~fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~GIKpIiG~Ei~v~~~~~--~~~~ 80 (1149)
++|+||||||+||||||++++++||++|+++||+||||||||||||+++||++|+++|||||+|||+++.+.+. ....
T Consensus 2 ~~fv~Lh~hS~YS~Ldga~~i~~Lv~~A~~~g~~AlaiTD~~nl~Gav~Fy~~ak~~gikpIiG~e~~v~~~~~~~~~~~ 81 (1139)
T COG0587 2 MSFVHLHVHSEYSLLDGASKIEELVKKAKELGMPALALTDHNNLYGAVEFYKAAKKAGIKPIIGCEAYVANGDGFRGRER 81 (1139)
T ss_pred CceeecccccccchhccccCHHHHHHHHHHcCCCeEEEecCCcceeHHHHHHHHHHcCCeEEeeeEEEEeccccccccCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999986532 1246
Q ss_pred ccEEEEEcccHHHHHHHHHHHHHHHhhccCCcccccHHHHh-ccccCCCeEEEeCCCcchHHHHHhcCChHHHHHHHHHH
Q psy9396 81 SRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLE-KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRW 159 (1149)
Q Consensus 81 ~hlllLAkN~~Gy~nL~kL~S~~~~~~~~~~~p~i~~e~L~-~~~~~~glIiis~~~~g~i~~~l~~~~~~~a~~~~~~~ 159 (1149)
+|+++||||++||+|||+|+|.++++++ ++.|+++++++. + |++|+|++|+|..|++..+++.++.+.|++++.+|
T Consensus 82 ~~l~llAkn~~GY~nL~~LsS~a~~~g~-~~~~~i~~~~l~~~--~~eglI~~s~~~~g~v~~~ll~~~~~~a~~~~~~~ 158 (1139)
T COG0587 82 PHLLLLAKNNEGYKNLVKLSSIAYLEGE-KGKPRIDKDLLELE--YSEGLIALSACLGGEVPQLLLKGNEDLAEEALAWY 158 (1139)
T ss_pred ccEEEEeCCHHHHHHHHHHHHHHHhcCC-CCCcccCHHHHhhh--ccCCeEEeccccccchhhhhhcccHHHHHHHHHHH
Confidence 8999999999999999999999999985 458999999999 7 99999999999999999999999999999999999
Q ss_pred HHhCCCCeEEEEccCCCcchHHHHHHHHHHHHhcCCCEEEecCccccCccCchHHHHHHHHHcCCccccccccccCCcCC
Q psy9396 160 SKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239 (1149)
Q Consensus 160 ~~~f~~~~ylEi~~~~~~~~~~~n~~l~~lA~~~~iplVatnDvhyl~~eD~~~~~vL~aI~~g~~l~~~~~~~~~~~~~ 239 (1149)
+++||++||+|+|+|+.+++...+..++++|+++|+|+||||||||++++|+.+|+++.||++|.+++++++....+.++
T Consensus 159 ~~~Fg~~~ylelq~~~~~~~~~~~~~~~~la~~~~ip~vaTndv~y~~~~d~~ahd~~l~i~~~~~l~~~~~~~~~~~e~ 238 (1139)
T COG0587 159 KEVFGDDFYLELQRHGSPEDRRRNDALIKLARELGIPLVATNDVHYINPEDREAHDALLCIRTGKTLSDDKRLRYSSAEQ 238 (1139)
T ss_pred HHHhCcceeEeeecccCchHHHHHHHHHHHHHHcCCCeEEeccceecCcchHHHHHHHHHHhcCCeecccccccccCccc
Confidence 99999779999999999989999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhcChHHHHHHHHHHHHhccccccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhCCChhhhhhh
Q psy9396 240 NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEIYKCE 319 (1149)
Q Consensus 240 ~~~s~~em~~~f~~~~~a~~nt~~ia~~c~~~~~~~~~~lP~~~~p~~~~~~~~l~~l~~~gl~~r~~~~~~~~~~~~~~ 319 (1149)
||||++||.++|+++|+||+||.+||++|++++..+ +.+|+||+|++.++++||+++|++||++||. ..+.+......
T Consensus 239 ylks~eeM~~lf~d~peAl~nT~~Ia~rc~~~l~~~-~~lP~fp~~~~~~~~~~L~~~~~~Gl~~r~~-~~~~~~~~~~~ 316 (1139)
T COG0587 239 YLKSPEEMARLFADIPEALANTVEIAERCNFELDLG-PRLPNFPTPPGKSAAEYLRKLAEEGLEERYK-ERLAPEEVPEK 316 (1139)
T ss_pred ccCCHHHHHHHhhhhHHHHHHHHHHHHhcceehhcc-ccCCCCCCCCCCCHHHHHHHHHHHHHHHHHh-hccCccccchh
Confidence 999999999999999999999999999999999988 9999999999999999999999999999986 32211111111
Q ss_pred hHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCCcccCCCcchhHHHHHHHhcCCccCCCCCCCcceeccCCCCC
Q psy9396 320 KLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRI 399 (1149)
Q Consensus 320 ~~~~~~Rl~~EL~vI~~~gf~~YFLiv~D~v~~ak~~gi~vGpGRGSaagSlVaY~LgIT~vDPl~~~LlFERFLnpeR~ 399 (1149)
..+|++||+|||+||++|||+||||||||||+|||++|||||||||||||||||||||||+|||++|||||||||||||+
T Consensus 317 ~~~y~~RL~~EL~vI~~mgf~~YFLiV~D~I~~Ak~~gI~vGPGRGSaAGSLVaY~L~IT~IDPl~~~LLFERFLNpeR~ 396 (1139)
T COG0587 317 VREYKERLEYELDVINKMGFPGYFLIVWDFIKFARDNGIPVGPGRGSAAGSLVAYALGITDIDPLKYDLLFERFLNPERV 396 (1139)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCeEEeHHHHHHHHHHCCCccCCCCcchHHHHHHHHhcCCCcCccccCcchhhccCCCCC
Confidence 22799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeecCCCchHhHHHHHHHHhCcccEEEEEecccchhhhHHHHHHHhcCCCHHHHHHHHccCCCCCCCCcchHHHh
Q psy9396 400 SMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479 (1149)
Q Consensus 400 smPDIDiDf~~~~R~~vi~yv~~kYG~~~Va~I~Tf~t~~ak~airdv~r~lg~~~~~~~~i~k~ip~~~~~~~~l~~a~ 479 (1149)
||||||||||++||+|||+||++|||+++||||+|||||+||+||||||||||+|++.+|+|||+||..++ ++|.+++
T Consensus 397 smPDIDIDf~~~rReeVI~YV~ekYG~d~VAqIiTFgt~~aKaaiRDVgRvlg~~~~~~d~lsK~Ip~~~~--~~l~~a~ 474 (1139)
T COG0587 397 SMPDIDIDFCDERREEVIQYVYEKYGRDRVAQIITFGTLRAKAAIRDVGRVLGLPYGEVDKLAKLIPFWPG--LTLAVAY 474 (1139)
T ss_pred CCCCCCcCCccccHHHHHHHHHHHhccccEEEEEeeehhhHHHHHHHHHHHcCCCHHHHHHHHhcCCCccc--cchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988 8999999
Q ss_pred hhChHHHHHhhccHHHHHHHHHHHHcccccCCccccccEEEEcCCCCCccccceeeCCCCceEeeccccchhhcCCccee
Q psy9396 480 KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFD 559 (1149)
Q Consensus 480 ~~~~~l~~~~~~~~~~~~l~~~a~~leGl~r~~~~HaaGvvIs~~~l~~~~Pl~~~~~~~~~~tq~d~~~~e~~GLlK~D 559 (1149)
+++|++++.++++|.+++++++|++|||+|||+|+||||||||++||+++|||+.++++. .+|||||++||++||||||
T Consensus 475 ~~~~~l~~~~~~d~~~~~~~e~A~kLeGlpRh~s~HAaGvVIs~~~L~~~vPl~~~~~~~-~vtQ~dm~dlE~~GLvK~D 553 (1139)
T COG0587 475 EEEPELKELLDSDPEVKRLIELARKLEGLPRHLSTHAAGVVISDDPLTDLVPLYKDKNRD-GVTQYDMDDLEAVGLLKFD 553 (1139)
T ss_pred cccHHHHhhccccHHHHHHHHHHHHhcCCCCCCCCCCCeEEecCCcccccCCeeecCCCC-ceeeechHHHHHcCCeeee
Confidence 999999999999999999999999999999999999999999999999999999877664 4999999999999999999
Q ss_pred ccCCCcHHHHHHHHHHHHhhcCCCCCcCCCCCCCCCHHHHHHHhcCCcCccccCCCHhHHHHHHhcCCCCHHHHHHHHhc
Q psy9396 560 FLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISL 639 (1149)
Q Consensus 560 ~LGl~~Ltii~~~~~~i~~~~~~~~~id~~~ip~dD~~t~~ll~~g~T~GvFQ~ES~gm~~~l~~~~P~~f~dl~a~~aL 639 (1149)
||||+|||+|++++++|+++++ .++|+.+||+||++||+||++|+|+|||||||+||+++|+++||++|+||||++||
T Consensus 554 fLGL~tLT~I~~a~~~I~~~~~--~~i~~~~IpldD~~~y~ml~~gdT~GVFQlES~gm~~~l~rlkP~~feDiva~vAL 631 (1139)
T COG0587 554 FLGLKTLTIIQRALDLIKEKRG--IDIDLASIPLDDPKTYEMLAKGDTLGVFQLESRGMKSLLKRLKPDNFEDIVALVAL 631 (1139)
T ss_pred hhcccHHHHHHHHHHHHHHccC--CCcchhcCCcccHHHHHHHhccCceEEEeecCHHHHHHHHhcCCCcHHHHHHHHHh
Confidence 9999999999999999999874 88999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccc--hHHHHHhhcC-CCCCCCCc-chhhccccccCeehhHHHHHHHHHHHcCCCchhhhHHHHHhCCCChHHHH
Q psy9396 640 YRPGPMDL--IKNFCRRKHG-EYFNYPDP-RTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715 (1149)
Q Consensus 640 ~RPGp~~~--i~~yi~rk~g-~~v~y~~p-~l~~iL~~TyGvivYQEQvM~ia~~~agfs~~eAD~lRram~KK~~~~m~ 715 (1149)
||||||++ |++||+|||| |+++|+|| .|++||++||||||||||||||||++||||+||||+||||||||+.++|+
T Consensus 632 yRPGPm~~gmI~~fi~RK~g~e~i~y~~p~~Le~IL~~TYGVivYQEQVMqIAq~~agfSlgeAD~LRRAMgKK~~~~m~ 711 (1139)
T COG0587 632 YRPGPMQGGMIPPFINRKHGREEIEYPHPEPLEPILKETYGVIVYQEQVMQIAQVLAGFSLGEADLLRRAMGKKKAEEME 711 (1139)
T ss_pred cCCCCcCCCCcchHHhccCCCCCCCCCCchhHHHHhhcccCceeeHHHHHHHHHHHcCCCchhHHHHHHHHccCCHHHHH
Confidence 99999995 9999999999 99999998 78889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhhHHHHHHHHHHHHHHhhcChHHHHHHhcccccCChHHHHHHH
Q psy9396 716 EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILV 795 (1149)
Q Consensus 716 ~~~~~F~~ga~~~g~~~~~a~~i~~~i~~fa~YgFnksHa~aYa~~ay~~AylK~~yP~~f~~a~l~~~~~~~~k~~~~~ 795 (1149)
++|++|++||++||++++.|++||++|++||+||||||||+|||++||||||||+|||+|||||+||+++++++|++.|+
T Consensus 712 ~~r~~F~~Ga~~~G~~~~~a~~ifd~i~kFA~YGFNkSHAaAYa~isYqtAyLKahYP~eF~aall~s~~~n~~k~~~~i 791 (1139)
T COG0587 712 KQREKFIEGAVKNGYDKEFAEKIFDLIEKFAGYGFNKSHAAAYALLSYQTAYLKAHYPAEFMAALLTSEPMNFDKVAQYI 791 (1139)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhcCCCCcccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCeeeCCcccccCCCceeeeecCCCCCeEEecccccCCccHHHHHHHHHHHhcCCCCCHHHHHhhcccCCCCH
Q psy9396 796 KDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINR 875 (1149)
Q Consensus 796 ~e~~~~~gi~ilppdin~S~~~f~~~~~~~~~~~~I~~gl~~Ikgvg~~~~~~i~~~r~~g~f~~~~df~~r~~~~~~~~ 875 (1149)
.||++ +||+|+|||||+|.+.|+++ +.++|||||.+|||||..++++|+++|+.+||+|++|||.|++.+.+||
T Consensus 792 ~ear~-~Gi~VlpPdIN~S~~~f~~~-----~~~~I~~gL~~IKGvg~~~i~~Iv~~R~~~~~~~~~df~~r~~~~~l~k 865 (1139)
T COG0587 792 QEARR-MGIEVLPPDINRSGWDFTVE-----EKKAIRLGLGAIKGVGEDAIEEIVEARKEKPFKSLEDFCDRIDRKGLNK 865 (1139)
T ss_pred HHHHH-cCCeEeCCcccccCCcceec-----CCCcEEEhhhhhcCCcHHHHHHHHHHhhcccCCcHhHHHHHhhhccCCH
Confidence 99999 99999999999999999998 3269999999999999999999999998559999999999999999999
Q ss_pred HHHHHHHHcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC-CCC-cccccccccCCCCCCChHHHHHHHHHH
Q psy9396 876 RIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKN-DDN-NNLKEYLNYVKVPSWSKKQELIEEKKV 953 (1149)
Q Consensus 876 ~~le~Li~~Gafd~~~~~R~~ll~~l~~~~~~~~~~~~~~~~~~q~~L-~~~-~~~~~~~~~~~~~~~~~~e~l~~EkE~ 953 (1149)
+++|+||+|||||+||.||++||++++.+++.+.+..++ .+|++| +.. ........++..++|+..|++..|+|+
T Consensus 866 r~lE~LikaGAfd~~~~~R~~ll~~~~~~~~~~~~~~~~---~~q~~lF~~~~~~~~~~~~~~~~~~~~~~e~l~~E~e~ 942 (1139)
T COG0587 866 RVLESLIKAGAFDSFGKNRAQLLAALDDLLDAASGTAKN---SGQLSLFGAAAAGESEQVSYVALPEWSEKEKLALEKET 942 (1139)
T ss_pred HHHHHHHHcCcccchhhhHHHHHHHHHHHHHHHhhhHhh---cccccccchhhccccccccccccccCChhHHHHHHHHH
Confidence 999999999999999999999999999999988744332 578888 321 111100145678999999999999999
Q ss_pred hCccccccchH-HHHHHHhhccc-ccccccCCCCc-eEEEEEEEeeeEeeec-CC-cEEEEEEEeCCceEEEEEchHHHH
Q psy9396 954 LGFCLSEHIFC-IYETEIRQFIP-IYLSELKPTYS-CTVSGIITELKLKTTY-RG-KILIIVIDDNSNSVEVIINNQLYE 1028 (1149)
Q Consensus 954 LG~yls~HPl~-~~~~~l~~~~~-~~i~~l~~~~~-v~v~G~I~~vk~~~TK-~G-~mafltleD~tg~ie~vvFp~~y~ 1028 (1149)
||+|+|+||++ .+...++.... +++.++...+. .+++|.|+.+|+++|| +| +|+|+|++|++|.+|+++||+.|+
T Consensus 943 lG~yls~HPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vr~~~tk~~G~~~~f~tl~D~~g~~e~v~f~~~~~ 1022 (1139)
T COG0587 943 LGLYLSGHPLDFLYEDLLARGLTPIRLLDLVEDGRRVVLAGGIVAVRQRPTKAKGNKMAFLTLEDETGILEVVVFPSEYE 1022 (1139)
T ss_pred hceeccCCCchHHHHHHHhccccccchhhhccccceeEEEEEEEEEEEeeccCCCCEEEEEEEecCCCcEEEEEcHHHHH
Confidence 99999999999 66666654433 56666666555 8999999999999999 79 799999999999999999999999
Q ss_pred HHHhhccCCcEEEEEEEEEeeccCCceEEEEccccccHHHHHhc--CcEEEEEecCcc----hHHHHHHHHHhcCCCCCc
Q psy9396 1029 KNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILY--GKKFSVMFNRTF----NISILKKILLRFKCKNGL 1102 (1149)
Q Consensus 1029 ~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~~~i~~l~~~~~~~--~~~l~i~l~~~~----~l~~l~~il~~~~G~G~~ 1102 (1149)
+++..+.++.+++|+|+++.++.....+++++++.++...+.+. ...++++++... ...++...+..++| .+
T Consensus 1023 ~~~~~l~~~~~~~v~g~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~ 1100 (1139)
T COG0587 1023 RYRRLLLEGRLLIVKGKVQRREDGVGHALILEDLSPLEEARERVADFLAIYLRLNTSQLDRLKLLKIKSILRQGKG--KT 1100 (1139)
T ss_pred HHHHHhccCcEEEEEEEEEecccccchhhhHHHhhhHHHHHHhhhhhhccccccChhhhhhhhhhhhhhhhhcCCC--Cc
Confidence 99999999999999999998643333479999999998875432 346777766552 23444556666666 99
Q ss_pred cEEEEEEecCceeEEEEcCCcceecCcHHHHHHHHhcCcccEEE
Q psy9396 1103 PFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALINLGLYNAII 1146 (1149)
Q Consensus 1103 ~V~l~~~~~~~~~~~~~l~~~~~v~~~~~l~~~L~~~G~~~v~i 1146 (1149)
+|++++. .......+.++. |+|+ +++..|. .|..+|++
T Consensus 1101 ~v~~~~~-~~~~~~~~~~~~-~~v~---~l~~~l~-~~~~~~~~ 1138 (1139)
T COG0587 1101 PVILIYQ-NGDSRNFLRLGE-LRVS---TLVEALK-DGKGNVEL 1138 (1139)
T ss_pred cEEEEec-cccchheeeccc-eeHH---HHHHHHh-cCccceEe
Confidence 9999998 555567788887 8888 8888888 67777765
No 6
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed
Probab=100.00 E-value=1.6e-277 Score=2546.27 Aligned_cols=1023 Identities=31% Similarity=0.504 Sum_probs=954.9
Q ss_pred ccccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhCCCeeEeeeeeeecccccCCCCccE
Q psy9396 4 QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIENKKPSRL 83 (1149)
Q Consensus 4 ~fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~GIKpIiG~Ei~v~~~~~~~~~~hl 83 (1149)
||||||+||+||+|||+++|++||++|+++||+||||||||||||+++||++|+++|||||+|||+++.++. +.+|+
T Consensus 1 mfvhLh~hS~YSlldg~~~i~~lv~~A~~~g~~alAlTD~~~m~Ga~~F~~~a~~~gIkPIiG~e~~v~~~~---~~~~l 77 (1034)
T PRK07279 1 MFAQLDTKTVYSFMDSLIDLEKYVERAKELGYQTIGIMDKDNLYGAYHFIEGAQKNGLQPILGLELNIFVEE---QEVTL 77 (1034)
T ss_pred CeeeeecCCCCccccccCCHHHHHHHHHHCCCCEEEEEcCCccccHHHHHHHHHHcCCcEEEEEEEEEecCC---CcceE
Confidence 699999999999999999999999999999999999999999999999999999999999999999997532 35799
Q ss_pred EEEEcccHHHHHHHHHHHHHHHhhccCCcccccHHHHhccccCCCeEEEeCCCcchHHHHHhcCChHHHHHHHHHHHHhC
Q psy9396 84 LLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIF 163 (1149)
Q Consensus 84 llLAkN~~Gy~nL~kL~S~~~~~~~~~~~p~i~~e~L~~~~~~~glIiis~~~~g~i~~~l~~~~~~~a~~~~~~~~~~f 163 (1149)
+|||||++||+|||+|+|.++. |++++++|.+ |++|+|++++|. .+ ..++ +|
T Consensus 78 vlLAkN~~GY~nL~kL~s~~~~-------~~i~~~~L~~--~~~gLi~l~~~~--------------~~---~~~~--~f 129 (1034)
T PRK07279 78 RLIAKNTQGYKNLLKISTAKMS-------GKKQFSDLSQ--YLEGIAVIVPYF--------------DW---SETL--EL 129 (1034)
T ss_pred EEEECCHHHHHHHHHHHHHhhc-------ccCCHHHHHh--hCCCeEEEEChH--------------HH---HHHh--hc
Confidence 9999999999999999998753 5799999999 999999999872 11 1222 78
Q ss_pred CCCeEEEEccCCCcchHHHHHHHHHHHHhcCCCEEEecCccccCccCchHHHHHHHHHcCCccccccccccCCcCCCCCC
Q psy9396 164 PDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKT 243 (1149)
Q Consensus 164 ~~~~ylEi~~~~~~~~~~~n~~l~~lA~~~~iplVatnDvhyl~~eD~~~~~vL~aI~~g~~l~~~~~~~~~~~~~~~~s 243 (1149)
+++||+|+|+|+ +|+++++|+||||||||++++|+.+|++|.||++|++++++++ .+.++||+|
T Consensus 130 ~~~~ylei~~~~-------------~a~~~~~plvatndv~y~~~~d~~~~~vL~~i~~~~~l~~~~~---~~~~~ylks 193 (1034)
T PRK07279 130 PFDYYIGVDQET-------------PGSDFKRPILPLRTVRYFESADRETLQMLHAIRDNLSLREVPL---VSSDQELIS 193 (1034)
T ss_pred CCcEEEEeecch-------------hHHHhCCCEEEecCCcccCHHHHHHHHHHHHHhcCCCccccCC---CCccccCCC
Confidence 989999999875 4889999999999999999999999999999999999999874 356899999
Q ss_pred HHHHHHHhc-ChHHHHHHHHHHHHhccccccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhCCChhhhhhhhHH
Q psy9396 244 QSEMIKLFY-DIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEIYKCEKLR 322 (1149)
Q Consensus 244 ~~em~~~f~-~~~~a~~nt~~ia~~c~~~~~~~~~~lP~~~~p~~~~~~~~l~~l~~~gl~~r~~~~~~~~~~~~~~~~~ 322 (1149)
++||.++|+ ++|+|++||.+||++|+++++ ++++||+|+ |+ .++++||+++|++||++|+. . .++
T Consensus 194 ~~em~~~f~~~~~~al~Nt~~Ia~~c~~~~~-~~~~lP~f~-~~-~~~~~yL~~l~~~Gl~~r~~---~--------~~~ 259 (1034)
T PRK07279 194 CQSLETLFQERFPQALDNLEKLVSGISYDFD-TDLKLPRFN-RD-RPAVEELRELAELGLKEKGL---W--------SSP 259 (1034)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhCeeccC-CCcCCCCCC-CC-CCHHHHHHHHHHHHHHHhcC---C--------cHH
Confidence 999999997 699999999999999999998 689999998 43 58999999999999999962 1 257
Q ss_pred HHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCCcccCCCcchhHHHHHHHhcCCccCCCCCCCcceeccCCCCCCCC
Q psy9396 323 YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMP 402 (1149)
Q Consensus 323 ~~~Rl~~EL~vI~~~gf~~YFLiv~D~v~~ak~~gi~vGpGRGSaagSlVaY~LgIT~vDPl~~~LlFERFLnpeR~smP 402 (1149)
|++||+|||+||++|||+||||||||||+|||++||+||||||||||||||||||||+||||+|||||||||||||+|||
T Consensus 260 y~~RL~~EL~vI~~mgf~~YFLIV~D~i~~Ak~~gI~vGPGRGSaAGSLVaY~LgIT~vDPl~y~LlFERFLNpeR~smP 339 (1034)
T PRK07279 260 YQERLDKELSVIHDMGFDDYFLIVWDLLRFGRSQGYYMGMGRGSAAGSLVAYALDITGIDPVKHNLLFERFLNKERYSMP 339 (1034)
T ss_pred HHHHHHHHHHHHHHCCCchhhHHHHHHHHHHHhCCceeCCCCchHHHHHHHHHhcCCccCccccCccHHhhcCccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeecCCCchHhHHHHHHHHhCcccEEEEEecccchhhhHHHHHHHhcCCCHHHHHHHHccCCCCCCCCcchHHHhhhC
Q psy9396 403 DFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482 (1149)
Q Consensus 403 DIDiDf~~~~R~~vi~yv~~kYG~~~Va~I~Tf~t~~ak~airdv~r~lg~~~~~~~~i~k~ip~~~~~~~~l~~a~~~~ 482 (1149)
|||||||++||++||+||++|||++|||||+|||||+||+||||||||||+|+.++|+|||+||.. +||+++++++
T Consensus 340 DIDiDf~~~rR~eVi~Yv~~kYG~~~VAqI~Tfgt~~aK~aiRDv~Rvlg~~~~~~d~iaK~ip~~----~~l~~a~~~~ 415 (1034)
T PRK07279 340 DIDIDLPDIYRSEFLRYVRNRYGSDHSAQIVTFSTFGAKQAIRDVFKRFGVPEYELSNLTKKISFR----DSLASVYEKN 415 (1034)
T ss_pred CeeeeCccccHHHHHHHHHHHhCcccEEEEeehhhhHHHHHHHHHHHHhCCCHHHHHHHHhcCCCc----ccHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999964 7899999999
Q ss_pred hHHHHHhhccHHHHHHHHHHHHcccccCCccccccEEEEcCCCCCccccceeeCCCCceEeeccccchhhcCCcceeccC
Q psy9396 483 PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLG 562 (1149)
Q Consensus 483 ~~l~~~~~~~~~~~~l~~~a~~leGl~r~~~~HaaGvvIs~~~l~~~~Pl~~~~~~~~~~tq~d~~~~e~~GLlK~D~LG 562 (1149)
++|++++++++.+++++++|++|||+|||+|+||||||||++||+++|||+.+. +.++|||||+++|++|||||||||
T Consensus 416 ~~l~~~~~~~~~~~~l~~~A~~LEGlpR~~s~HAaGvVIs~~pL~~~vPl~~~~--~~~vtQ~dm~~~E~~GLlK~DfLG 493 (1034)
T PRK07279 416 ISFRQIINSKLEYQKAFEIAKRIEGNPRQTSIHAAGVVMSDDDLTNHIPLKYGD--DMMITQYDAHAVEANGLLKMDFLG 493 (1034)
T ss_pred HHHHhhccCCHHHHHHHHHHHHhcCCCCCCCcCCCEEEEeCCcccccCCcEECC--CCeEeeecchhHHHCCCceEEECC
Confidence 999999999999999999999999999999999999999999999999999863 368999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCCcCCCCCCCCCHHHHHHHhcCCcCccccCCCHhHHHHHHhcCCCCHHHHHHHHhccCC
Q psy9396 563 LTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRP 642 (1149)
Q Consensus 563 l~~Ltii~~~~~~i~~~~~~~~~id~~~ip~dD~~t~~ll~~g~T~GvFQ~ES~gm~~~l~~~~P~~f~dl~a~~aL~RP 642 (1149)
|+|||+|++++++|+++++ .++|+++||+||++||+||++|+|.|||||||+|||++|++++|++|+||+|++|||||
T Consensus 494 Lr~LtiI~~~~~~I~~~~g--~~idl~~ipldD~~t~~ll~~g~T~GVFQlES~gm~~~l~~lkP~~feDiia~~ALyRP 571 (1034)
T PRK07279 494 LRNLTFVQKMQEKVAKDYG--IHIDIEAIDLEDKETLALFAAGDTKGIFQFEQPGAINLLKRIKPVCFEDIVATTSLNRP 571 (1034)
T ss_pred CCcHHHHHHHHHHHHHhhC--CCCCHhhCCCccHHHHHHHhCCCceeeCCCCCHHHHHHHHHcCCCCHHHHHHHHhhcCC
Confidence 9999999999999999874 88999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccchHHHHHhhcC-CCCCCCCcchhhccccccCeehhHHHHHHHHHHHcCCCchhhhHHHHHhCCCChHHHHHHHHHH
Q psy9396 643 GPMDLIKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721 (1149)
Q Consensus 643 Gp~~~i~~yi~rk~g-~~v~y~~p~l~~iL~~TyGvivYQEQvM~ia~~~agfs~~eAD~lRram~KK~~~~m~~~~~~F 721 (1149)
|||+||++||+|||| ++|+|+||.|++||++|||||||||||||||+.+||||+||||.||||||||+.++|+++|++|
T Consensus 572 GP~~~i~~yi~rK~g~e~i~y~hp~Le~IL~~TyGvivYQEQVMqia~~~agfslgeAD~lRrAm~KK~~~~m~~~~~~F 651 (1034)
T PRK07279 572 GASDYTDNFVKRRHGQEKVDLIDPVIAPILEPTYGIMLYQEQVMQIAQVFAGFSLGKADLLRRAMSKKNASEMQKMEEDF 651 (1034)
T ss_pred CcccccHHHHHhcCCCCCCCCCChhHHHHHhcccCchhhHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhcccCCChhhHHHHHHHHHHHHHHhhcChHHHHHHhcccccCChHHHHHHHHHHHhh
Q psy9396 722 QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKT 801 (1149)
Q Consensus 722 ~~ga~~~g~~~~~a~~i~~~i~~fa~YgFnksHa~aYa~~ay~~AylK~~yP~~f~~a~l~~~~~~~~k~~~~~~e~~~~ 801 (1149)
++||++||++++.|++||++|++||+||||||||+|||++||||||||+|||+|||||+||+..+ .|+.||++
T Consensus 652 ~~ga~~~g~~~~~a~~if~~i~~FA~YgFNkSHa~aYa~iaYqtAyLKahyP~eF~aalL~~~~~------~~i~ea~~- 724 (1034)
T PRK07279 652 LQGALELGHSEEKARELFDRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFYDIMLNYSSS------DYITDALE- 724 (1034)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhhccHHHHHHHHhcCCHH------HHHHHHHH-
Confidence 99999999999999999999999999999999999999999999999999999999999997643 49999999
Q ss_pred CCCeeeCCcccccCCCceeeeecCCCCCeEEecccccCCccHHHHHHHHHHHhcCCCCCHHHHHhhcccCCCCHHHHHHH
Q psy9396 802 CGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSL 881 (1149)
Q Consensus 802 ~gi~ilppdin~S~~~f~~~~~~~~~~~~I~~gl~~Ikgvg~~~~~~i~~~r~~g~f~~~~df~~r~~~~~~~~~~le~L 881 (1149)
+||+|+|||||+|.+.|+++ +++||+||++|||||++++++|+++| ||+|++|||.|++.+.+||+++|+|
T Consensus 725 ~gI~VlpPdIN~S~~~f~~~------~~~Ir~GL~aIkgvg~~~~~~I~~~R---~f~s~~Df~~R~~~~~~~k~~le~L 795 (1034)
T PRK07279 725 FGFEVAKLSINTIPYHDKIE------NKKIYLGLKNIKGLPRDLAYWIIENR---PFSSIEDFLTRLPENYQKKEFLEPL 795 (1034)
T ss_pred CCCeEECCcccccCCcceee------CCEEEeehhhcCCCCHHHHHHHHHCC---CCCCHHHHHHhcCcCCCCHHHHHHH
Confidence 99999999999999999997 46899999999999999999999998 9999999999999999999999999
Q ss_pred HHcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC-CCCcccccccccCCCCCCChHHHHHHHHHHhCccccc
Q psy9396 882 INSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKN-DDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960 (1149)
Q Consensus 882 i~~Gafd~~~~~R~~ll~~l~~~~~~~~~~~~~~~~~~q~~L-~~~~~~~~~~~~~~~~~~~~~e~l~~EkE~LG~yls~ 960 (1149)
|+|||||+||.||++|+++++.+++.++. +.+| +.. .+.+++.++|+..|++++|+|+||||+|+
T Consensus 796 I~aGAfD~~g~~R~~ll~~l~~~~~~~~~---------~~~lf~~~-----~~~~~~~~~~~~~e~l~~E~e~lG~yls~ 861 (1034)
T PRK07279 796 IKIGLFDSFEKNRQKIINNLDNLFVFVNE---------LGSLFADS-----SYSWVEAEDYSETEKYSLEQELLGVGVSK 861 (1034)
T ss_pred HHcCchhhhcccHHHHHHHHHHHHHHHHh---------ccCccccc-----ccCCCCCCCCChhHHHHHHHHHhCccccc
Confidence 99999999999999999999988876533 1233 211 12356778999999999999999999999
Q ss_pred cchHHHHHHHhhcccccccccCCCCceEEEEEEEeeeEeeec-CC-cEEEEEEEeCCceEEEEEchHHHHHHHhhccCCc
Q psy9396 961 HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTY-RG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENE 1038 (1149)
Q Consensus 961 HPl~~~~~~l~~~~~~~i~~l~~~~~v~v~G~I~~vk~~~TK-~G-~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~ 1038 (1149)
||++.|+..++. ..++++++..+..+.++|+|++++.++|| +| +|+|+++||.+|.+|+++||++|++++..+..+.
T Consensus 862 HPl~~~~~~~~~-~~~~~~~l~~~~~~~~~~~i~~~~~~~tk~~g~~maf~~leD~~g~ie~~vFp~~y~~~~~~l~~~~ 940 (1034)
T PRK07279 862 HPLQAIAEKSSR-PFTPISQLVKNSEATILVQIQSIRVIRTKTKGQQMAFLSVTDTKKKLDVTLFPETYRQYKDELKEGK 940 (1034)
T ss_pred CchHHHHHHHHh-cCccHHHHhcCCcceEEEEEEEEEEEEEcCCCCeEEEEEEeeCCCcEEEEECHHHHHHHHHHhccCC
Confidence 999999999877 55678888655578899999999999999 99 8999999999999999999999999999999999
Q ss_pred EEEEEEEEEeeccCCceEEEEccccccHHHHHhcCcEEEEEecCcchHHHHHHHHHhcCCCCCccEEEEEEecCceeEEE
Q psy9396 1039 LLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEM 1118 (1149)
Q Consensus 1039 ~v~v~G~v~~~~~~~~~~ii~~~i~~l~~~~~~~~~~l~i~l~~~~~l~~l~~il~~~~G~G~~~V~l~~~~~~~~~~~~ 1118 (1149)
+|+|+|+|+.+ ++..+++++++.++. .+.++|++.....+.+|++++.+|+| .+||++++. .+ .+.+
T Consensus 941 ~~~v~G~v~~~--~~~~~l~~~~i~~l~------~~~~~i~~~~~~~~~~l~~~l~~~~G--~~~v~~~~~-~~--~~~~ 1007 (1034)
T PRK07279 941 FYYLKGKIQER--DGRLQMVLQQIQEAS------SERFWILLENHEHDQEISEILGAFPG--SIPVIIHYQ-EE--KETI 1007 (1034)
T ss_pred EEEEEEEEEec--CCeeEEEEeeeeccc------cCeEEEEeCchhHHHHHHHHHHhCCC--CceEEEEEe-cC--ceEE
Confidence 99999999874 467899999999886 24688888654568899999999998 999999998 55 4567
Q ss_pred EcCCcceecCcHHHHHHHHh-cC
Q psy9396 1119 KFPLNYKVQPIDDLKLALIN-LG 1140 (1149)
Q Consensus 1119 ~l~~~~~v~~~~~l~~~L~~-~G 1140 (1149)
.+ ..|+|+++++++++|.. .+
T Consensus 1008 ~~-~~~~v~~~~~~~~~l~~~~~ 1029 (1034)
T PRK07279 1008 QS-THIFVAKSEELEEKLSEFVL 1029 (1034)
T ss_pred Ee-ccceeCCCHHHHHHHHHHHH
Confidence 77 78999999999999988 54
No 7
>TIGR00594 polc DNA-directed DNA polymerase III (polc). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.9e-265 Score=2478.97 Aligned_cols=1000 Identities=45% Similarity=0.786 Sum_probs=943.1
Q ss_pred cccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhCCCeeEeeeeeeeccccc--------
Q psy9396 5 FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIE-------- 76 (1149)
Q Consensus 5 fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~GIKpIiG~Ei~v~~~~~-------- 76 (1149)
|+|||+||.||+|||+++|+++|++|+++|++++|||||++|+|+++|+++|++.|||||+|||+++.+++.
T Consensus 1 fv~LHvHS~yS~Ldg~~~~~elv~~A~~~G~~alAiTDH~~l~g~~~f~~~~~~~gIkpI~G~Ei~~~~~~~~~~~~~~~ 80 (1022)
T TIGR00594 1 FVHLHVHSDYSLLDGAAKIKPLVKKAKELGMPALALTDHGNMFGAVEFYKACKKAGIKPIIGCEAYVAPGSRFDKKRISK 80 (1022)
T ss_pred CeeeeecccCccccccCCHHHHHHHHHHCCCCEEEEecCCCchhHHHHHHHHHHcCCeEEEEEEEEeeCCCccccccccc
Confidence 799999999999999999999999999999999999999999999999999999999999999999876421
Q ss_pred CCCCccEEEEEcccHHHHHHHHHHHHHHHhhccCCcccccHHHHhccccCCCeEEEeCCCcchHHHHHhcCChHHHHHHH
Q psy9396 77 NKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFA 156 (1149)
Q Consensus 77 ~~~~~hlllLAkN~~Gy~nL~kL~S~~~~~~~~~~~p~i~~e~L~~~~~~~glIiis~~~~g~i~~~l~~~~~~~a~~~~ 156 (1149)
....+|++|||||++||+|||+|+|.++++++++ .|++++++|.+ |++|||++|+|..|++.+.+..++.+.|.+++
T Consensus 81 ~~~~~~l~llAkn~~Gy~nL~kL~S~a~~~~~~~-~p~i~~~~l~~--~~~gli~ls~~~~g~~~~~l~~~~~~~a~~~~ 157 (1022)
T TIGR00594 81 GKEAYHLILLAKNNTGYRNLMKLSSLAYLEGFYY-KPRIDKELLEE--HSEGLIALSACLSGEVPYLLLLGEERLAEEAA 157 (1022)
T ss_pred cCCCccEEEEeCCHHHHHHHHHHHHHHHhhCCCC-CcccCHHHHHh--cCCCeEEEeCCccchHHHHHhCCCHHHHHHHH
Confidence 1235799999999999999999999999988654 69999999999 99999999999999999999999999999999
Q ss_pred HHHHHhCCCCeEEEEccCCCcchHHHHHHHHHHHHhcCCCEEEecCccccCccCchHHHHHHHHHcCCccccccccccCC
Q psy9396 157 RRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFT 236 (1149)
Q Consensus 157 ~~~~~~f~~~~ylEi~~~~~~~~~~~n~~l~~lA~~~~iplVatnDvhyl~~eD~~~~~vL~aI~~g~~l~~~~~~~~~~ 236 (1149)
.+|.++|+++||+|+++|+.+.+..+|..++++|+++++|+||||||||++++|+.+|++|.||++|++++++++....+
T Consensus 158 ~~~~~~f~~~~ylei~~~~~~~~~~~~~~l~~la~~~~iplVat~dv~y~~~~d~~~~~vl~~i~~g~~~~~~~~~~~~~ 237 (1022)
T TIGR00594 158 LKYQEIFGDDYYLELQDHGIPEQRVVNEALLEISEELGIPLVATNDVHYINPEDAHAHEILLCIQTGKTLSDPKRLKFYS 237 (1022)
T ss_pred HHHHHhcCCcEEEEeccCCChHHHHHHHHHHHHHHHhCCCEEEecCCccCCHHHHHHHHHHHHHhCCCCccccchhccCC
Confidence 99999999889999999999999999999999999999999999999999999999999999999999999998876677
Q ss_pred cCCCCCCHHHHHHHhcChHHHHHHHHHHHHhcc-ccccccCCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHhhhCCChh
Q psy9396 237 KEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCN-LKLEFGKPKLPKFPTPKNINI-NDFLISKSKHGLKKRLLNLYKDPE 314 (1149)
Q Consensus 237 ~~~~~~s~~em~~~f~~~~~a~~nt~~ia~~c~-~~~~~~~~~lP~~~~p~~~~~-~~~l~~l~~~gl~~r~~~~~~~~~ 314 (1149)
+++||+|++||.++|+++|+|++||.+||++|+ +++++.+++||+|+.|++.++ ++||+++|++|+++||+...+..
T Consensus 238 ~~~~l~s~~em~~~f~~~~~al~nt~~Ia~~c~~~~~~~~~~~lP~~~~p~~~~~~~~~L~~l~~~gl~~r~~~~~~~~- 316 (1022)
T TIGR00594 238 DEFYLKSPEEMAELFADIPEALANTVEIAERCNLVDVKLGPPRLPSYQIPPDFTSQEDYLRHLADEGLRERLAAGPPGY- 316 (1022)
T ss_pred cccccCCHHHHHHHhhccHHHHHHHHHHHHhccccccCcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCCcc-
Confidence 899999999999999999999999999999999 999999999999999998876 89999999999999996432100
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCCcccCCCcchhHHHHHHHhcCCccCCCCCCCcceecc
Q psy9396 315 IYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFL 394 (1149)
Q Consensus 315 ~~~~~~~~~~~Rl~~EL~vI~~~gf~~YFLiv~D~v~~ak~~gi~vGpGRGSaagSlVaY~LgIT~vDPl~~~LlFERFL 394 (1149)
...++|++||+|||+||++|||+||||||||||+|||++||+||||||||||||||||||||+||||+|||||||||
T Consensus 317 ---~~~~~~~~RL~~EL~vI~~~gf~~YFLIV~D~v~~Ar~~gI~vGpGRGSaAgSlVaY~LgIT~VDPl~~~LlFERFL 393 (1022)
T TIGR00594 317 ---KRRAQYKERLEYELDVINSMGFPGYFLIVWDFIKWAKDHGIPVGPGRGSAAGSLVAYALKITDIDPIKHGLLFERFL 393 (1022)
T ss_pred ---cchHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHCCCeeCCCCChHHHHHHHHHhcCCccCccccCCchhhcc
Confidence 01267999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCceeecCCCchHhHHHHHHHHhCcccEEEEEecccchhhhHHHHHHHhcCCCHHHHHHHHccCCCCCCCCcc
Q psy9396 395 NPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLIT 474 (1149)
Q Consensus 395 npeR~smPDIDiDf~~~~R~~vi~yv~~kYG~~~Va~I~Tf~t~~ak~airdv~r~lg~~~~~~~~i~k~ip~~~~~~~~ 474 (1149)
||||++|||||||||++||++||+||++|||++|||||+|||||++|+||||||||||+|+.++|+++|+||..++ +|
T Consensus 394 npeR~smPDIDiDf~~~rR~eVi~Yv~~kYG~~~VaqI~Tf~t~~ak~Airdv~rvlg~~~~~~d~i~k~ip~~~~--~~ 471 (1022)
T TIGR00594 394 NPERISMPDIDIDFCDERRDEVIEYVADKYGHDNVAQIITFGTMKAKAALRDVARVLDIPYAEADRIAKLIPPRPG--KT 471 (1022)
T ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHhCccCEEEEeehhhhHHHHHHHHHHHHhCCCHHHHHHHHhcCCCcCC--CC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998877 89
Q ss_pred hHHHhhhChHHHHHhhccHHHHHHHHHHHHcccccCCccccccEEEEcCCCCCccccceeeCCCCceEeeccccchhhcC
Q psy9396 475 LSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIG 554 (1149)
Q Consensus 475 l~~a~~~~~~l~~~~~~~~~~~~l~~~a~~leGl~r~~~~HaaGvvIs~~~l~~~~Pl~~~~~~~~~~tq~d~~~~e~~G 554 (1149)
|+++++++|+|++++++++.+++|+++|++|||+|||+|+||||||||++||+++|||+.+++++.++|||||++||++|
T Consensus 472 l~~~~~~~~~~~~~~~~~~~~~~l~~~A~~leGlpR~~s~HaaGvVIs~~pl~~~vPl~~~~~~~~~vtQ~d~~~~E~~G 551 (1022)
T TIGR00594 472 LKEALEASPQLRQLYEEDPEVKQLIDMARKLEGLNRNAGVHAAGVVISSEPLTDYVPLYKDKEGGAISTQYDMDDLEAVG 551 (1022)
T ss_pred HHHHHhhChHHHhhhhcCHHHHHHHHHHHHhCCCCCCCCcCCCEEEEeCCcccccCCeeEcCCCCcEEEeeccHHHHHcC
Confidence 99999999999999998999999999999999999999999999999999999999999987756899999999999999
Q ss_pred CcceeccCCCcHHHHHHHHHHHHhhcCCCCCcCCCCCCCCCHHHHHHHhcCCcCccccCCCHhHHHHHHhcCCCCHHHHH
Q psy9396 555 LIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEII 634 (1149)
Q Consensus 555 LlK~D~LGl~~Ltii~~~~~~i~~~~~~~~~id~~~ip~dD~~t~~ll~~g~T~GvFQ~ES~gm~~~l~~~~P~~f~dl~ 634 (1149)
|||||||||+|||+|++++++|+++++ .++|+++||+||++||+||++|+|.|||||||+|||++|++++|++|+|||
T Consensus 552 LlK~D~LGL~~Lt~i~~~~~~i~~~~~--~~id~~~ipldD~~t~~ll~~g~T~GVFQlES~gm~~~L~~lkP~~feDlv 629 (1022)
T TIGR00594 552 LLKMDFLGLKTLTLIQDATELIRKRRG--IDLDIASIPLDDKKTFSLLQEGDTTGVFQLESRGMQDLLKRLKPDGFEDII 629 (1022)
T ss_pred CeeeeeCCCCcHHHHHHHHHHHHHhhC--CCCChhhcCCCcHHHHHHHhCCCcccCCcccCHHHHHHHHHcCCCCHHHHH
Confidence 999999999999999999999999874 889999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCccc--chHHHHHhhcC-CCCCCCCcchhhccccccCeehhHHHHHHHHHHHcCCCchhhhHHHHHhCCCCh
Q psy9396 635 ALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKT 711 (1149)
Q Consensus 635 a~~aL~RPGp~~--~i~~yi~rk~g-~~v~y~~p~l~~iL~~TyGvivYQEQvM~ia~~~agfs~~eAD~lRram~KK~~ 711 (1149)
|++||||||||+ ||++||+|||| ++|+|+||.|++||++|||||||||||||||+++||||+||||.||||||||+.
T Consensus 630 a~~AL~RPGP~~~g~i~~yi~rk~g~e~i~y~hp~L~~iL~~TyGVivYQEQVMqia~~~AgfslgeAD~LRram~KK~~ 709 (1022)
T TIGR00594 630 AVNALYRPGPMESGMIPDFIDRKHGREPIEYPHPLLEPILKETYGVIVYQEQVMQIAQRLAGFSLGEADLLRRAMGKKKA 709 (1022)
T ss_pred HHHHhcCCCcccccchHHHHHhcCCCCCCCCCChhHHHHhcccCCeEeeHHHHHHHHHHHcCCCHHHHHHHHHHhcCCcH
Confidence 999999999998 99999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhhHHHHHHHHHHHHHHhhcChHHHHHHhcccccCChHHH
Q psy9396 712 SEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKI 791 (1149)
Q Consensus 712 ~~m~~~~~~F~~ga~~~g~~~~~a~~i~~~i~~fa~YgFnksHa~aYa~~ay~~AylK~~yP~~f~~a~l~~~~~~~~k~ 791 (1149)
++|+++|++|++||++||++++.|++||++|++||+||||||||+|||++||||||||+|||+|||||+||+..++++|+
T Consensus 710 ~~m~~~r~~Fi~ga~~~G~~~~~a~~i~~~i~~Fa~YgFnksHa~aYa~iay~~AylK~hyP~eF~~a~l~~~~~~~~k~ 789 (1022)
T TIGR00594 710 EEMAKEREKFVEGAEKNGYDPEIAENLFDLIEKFAGYGFNKSHAAAYGMISYQTAYLKANYPAEFMAALLTSEINDIEKV 789 (1022)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCcccccchHhHHHHHHHHHHhhccHHHhHhheeecCCCCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCeeeCCcccccCCCceeeeecCCCCCeEEecccccCCccHHHHHHHHHHHh-cCCCCCHHHHHhhccc
Q psy9396 792 KILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDK 870 (1149)
Q Consensus 792 ~~~~~e~~~~~gi~ilppdin~S~~~f~~~~~~~~~~~~I~~gl~~Ikgvg~~~~~~i~~~r~-~g~f~~~~df~~r~~~ 870 (1149)
..|+.||++ +||+|+|||||+|.+.|+++ +++||+||++|||||++++++|+++|+ +|||+|++||++|++.
T Consensus 790 ~~~~~e~~~-~gi~v~ppdin~S~~~f~~~------~~~i~~gl~~Ikgig~~~~~~Iv~~R~~~~~f~s~~Df~~R~~~ 862 (1022)
T TIGR00594 790 AVYIAEAKK-MGIEVLPPDINESGQDFAVE------DKGIRYGLGAIKGVGESVVKSIIEERNKNGPFKSLFDFINRVDF 862 (1022)
T ss_pred HHHHHHHHH-CCCEEECCcccccCCCcEEE------CCEEEechhhcCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHhcc
Confidence 999999999 99999999999999999987 468999999999999999999999998 7999999999999998
Q ss_pred CCCCHHHHHHHHHcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC-CCCcc--cccccccCCCCCCChHHHH
Q psy9396 871 KYINRRIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKN-DDNNN--LKEYLNYVKVPSWSKKQEL 947 (1149)
Q Consensus 871 ~~~~~~~le~Li~~Gafd~~~~~R~~ll~~l~~~~~~~~~~~~~~~~~~q~~L-~~~~~--~~~~~~~~~~~~~~~~e~l 947 (1149)
+.+|++++|+||++||||+||.||++|+++++.++++++...+. +..+|.+| +.... ....+.+++.++|+..|++
T Consensus 863 ~~~~~~~le~Li~aGafD~~~~~R~~l~~~~~~~~~~~~~~~~~-~~~~q~~lf~~~~~~~~~~~~~~~~~~~~~~~e~l 941 (1022)
T TIGR00594 863 KKLNKKVLEALIKAGAFDSLGPNRKTLLASLDDALDAVSRKKKA-EALGQNSLFGALSEGTKPEYVFFPPDEEWPDKKLL 941 (1022)
T ss_pred cCCCHHHHHHHHHcCcchhcchhHHHHHHHHHHHHHHHHHHHHH-HhcCCcCcccccccccccccccCCCCCCCChHHHH
Confidence 99999999999999999999999999999999999988776655 55677777 32111 1111234677899999999
Q ss_pred HHHHHHhCccccccchHHHHHHHhhcccc-cccccCC--CCceEEEEEEEeeeEe-eecCC-cEEEEEEEeCCceEEEEE
Q psy9396 948 IEEKKVLGFCLSEHIFCIYETEIRQFIPI-YLSELKP--TYSCTVSGIITELKLK-TTYRG-KILIIVIDDNSNSVEVII 1022 (1149)
Q Consensus 948 ~~EkE~LG~yls~HPl~~~~~~l~~~~~~-~i~~l~~--~~~v~v~G~I~~vk~~-~TK~G-~mafltleD~tg~ie~vv 1022 (1149)
.+|+|+||||+|+||++.|+..++.+... .+.++.. +.+++++|+|+++|++ +||+| +|+|+++||+||.+|++|
T Consensus 942 ~~E~e~lG~~ls~HPl~~~~~~l~~~~~~~~~~~~~~~~g~~v~v~G~i~~~~~~~~tkkG~~maf~tleD~tg~ie~vi 1021 (1022)
T TIGR00594 942 ALEKETLGLYVSGHPLDAYEKALKNTATPAAIEDLEAPNDSQVRTLGGLNSVKKKITTKNGKPMAFLQLEDETGSIEVVV 1021 (1022)
T ss_pred HccHHHhCCCCCcCcHHHHHHHHHhcCccchHhhhcccCCCEEEEEEEEEEEEEecccCCCCEEEEEEEEECCCcEEEEe
Confidence 99999999999999999999999887654 4666543 2379999999999886 78999 899999999999999999
Q ss_pred c
Q psy9396 1023 N 1023 (1149)
Q Consensus 1023 F 1023 (1149)
|
T Consensus 1022 F 1022 (1022)
T TIGR00594 1022 F 1022 (1022)
T ss_pred C
Confidence 8
No 8
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=100.00 E-value=1.4e-262 Score=2448.38 Aligned_cols=1021 Identities=28% Similarity=0.462 Sum_probs=947.1
Q ss_pred CCCccccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhCCCeeEeeeeeeecccccCCCC
Q psy9396 1 MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIENKKP 80 (1149)
Q Consensus 1 m~~~fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~GIKpIiG~Ei~v~~~~~~~~~ 80 (1149)
|-++|+|||+||.||+|||+++|++++++|++.|++++|||||+||+|+++|+++|++.|||||+|||+++.+.. ....
T Consensus 1 ~~~~fv~LHvHT~ySlLdg~~~~~elv~~A~~~G~~avAiTDh~~l~g~~~f~~~~~~~gIkpI~G~Ei~~~~~~-~~~~ 79 (1046)
T PRK05672 1 MLPPYAELHCHSNFSFLDGASHPEELVERAARLGLRALAITDECGLAGVVRAAEAAKELGLRLVIGAELSLGPDP-DPGG 79 (1046)
T ss_pred CCCceeeccccccCcccccCCCHHHHHHHHHHcCCCEEEEEeCCcchhHHHHHHHHHHCCCEEEEEEEEEEecCC-CCCC
Confidence 678899999999999999999999999999999999999999999999999999999999999999999986521 1346
Q ss_pred ccEEEEEcccHHHHHHHHHHHHHHHhhccCCcccccHHHHhccccCCCeE-EEeCCCcchHHHHHhcCChHHHHHHHHHH
Q psy9396 81 SRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLI-ALSGAHLGDIGIAVQNGRNDIAENFARRW 159 (1149)
Q Consensus 81 ~hlllLAkN~~Gy~nL~kL~S~~~~~~~~~~~p~i~~e~L~~~~~~~glI-iis~~~~g~i~~~l~~~~~~~a~~~~~~~ 159 (1149)
+|+++||+|++||+|||+|+|.++.++++ ..|++++++|.+ |++|+| ++|+|..|++.+++..++.+++.+.+.+|
T Consensus 80 ~hllllAkn~~Gy~nL~kL~S~a~~~~~~-~~p~i~~e~L~~--~~~gli~~ls~~~~g~~~~~~~~~~~~~~~~~~~~~ 156 (1046)
T PRK05672 80 PHLLVLARDREGYGRLSRLITRARLRAGK-GEYRLDLDDLAE--PAGGHWAILTGCRKGFVILALPYGGDAAALAALAAL 156 (1046)
T ss_pred ceEEEEEcChHHHHHHHHHHHHHHHhCCC-CCccccHHHHHh--hcCCCEEEecCCCcChHHHHhhcCChHHHHHHHHHH
Confidence 79999999999999999999999988764 369999999999 999998 59999999999999998877775555555
Q ss_pred H-HhCCCCeEEEEccCCCcchHHHHHHHHHHHHhcCCCEEEecCccccCccCchHHHHHHHHHcCCccccccccccCCcC
Q psy9396 160 S-KIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKE 238 (1149)
Q Consensus 160 ~-~~f~~~~ylEi~~~~~~~~~~~n~~l~~lA~~~~iplVatnDvhyl~~eD~~~~~vL~aI~~g~~l~~~~~~~~~~~~ 238 (1149)
. .+|+++||+|+++|+.+.++.+|+.++++|+++++|+||||||||++++|+.+|++|.||++|++++++++....+++
T Consensus 157 ~~~~~~~~~ylei~~~~~~~~~~~~~~l~~la~~~~ip~Vat~dv~Y~~~~d~~~~~vl~~i~~~~~l~~~~~~~~~~~~ 236 (1046)
T PRK05672 157 LDAFFADRVWLELTLHGRPDDDRRNARLAALAARAGVPLVATGDVHMHHRSRRRLQDAMTAIRARRSLAEAGGWLAPNGE 236 (1046)
T ss_pred HHHhCCCCEEEEEecCCChhHHHHHHHHHHHHHHhCCCEEEecCccccCHhhHHHHHHHHHHhCCCccccccccccCCCc
Confidence 4 456689999999999999999999999999999999999999999999999999999999999999998876667789
Q ss_pred CCCCCHHHHHHHhcChHHHHHHHHHHHHhccccccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhCCChhhhhh
Q psy9396 239 QNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEIYKC 318 (1149)
Q Consensus 239 ~~~~s~~em~~~f~~~~~a~~nt~~ia~~c~~~~~~~~~~lP~~~~p~~~~~~~~l~~l~~~gl~~r~~~~~~~~~~~~~ 318 (1149)
+||+|++||.++|+++|+|++||.+||++|++++++.+++||+|+.|++.++++||+++|++|+++||+..
T Consensus 237 ~ylks~~Em~~~f~~~~~al~Nt~~Ia~~c~~~l~~~~~~lP~f~~p~~~~~~~~L~~l~~~gl~~ry~~~--------- 307 (1046)
T PRK05672 237 RHLRSGAEMARLFPDYPEALAETVELAERCAFDLDLLAYEYPDEPVPAGHTPASWLRQLTEAGAARRYGPG--------- 307 (1046)
T ss_pred CccCCHHHHHHHhhccHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCC---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999998532
Q ss_pred hhHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCCcccCCCcchhHHHHHHHhcCCccCCCCCCCcceeccCCCC
Q psy9396 319 EKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNR 398 (1149)
Q Consensus 319 ~~~~~~~Rl~~EL~vI~~~gf~~YFLiv~D~v~~ak~~gi~vGpGRGSaagSlVaY~LgIT~vDPl~~~LlFERFLnpeR 398 (1149)
..++|++||+|||+||++|||++|||||||||+|||++||+| ||||||||||||||||||+||||+|||||||||||||
T Consensus 308 ~~~~~~~RL~~EL~vI~~~gf~~YFLIV~D~i~~Ak~~gi~v-pGRGSaAGSLVaY~LgIT~VDPl~~~LlFERFLnpeR 386 (1046)
T PRK05672 308 IPPKARAQIEHELALIAELGYEGYFLTVHDIVRFARSQGILC-QGRGSAANSAVCYALGITEVDPVQSGLLFERFLSPER 386 (1046)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHCCcee-CCCChHHHHHHHHHhCCCccCccccCCchhhccCCcc
Confidence 125799999999999999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred CCCCCceeecCCCchHhHHHHHHHHhCcccEEEEEecccchhhhHHHHHHHhcCCCHHHHHHHHccCCCCCCCCcchHHH
Q psy9396 399 ISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478 (1149)
Q Consensus 399 ~smPDIDiDf~~~~R~~vi~yv~~kYG~~~Va~I~Tf~t~~ak~airdv~r~lg~~~~~~~~i~k~ip~~~~~~~~l~~a 478 (1149)
.||||||||||+++|++||+||++|||++|||||+|||||++|+|+||||||||+|+.++|+++|+||..++ .+.
T Consensus 387 ~smPDIDiDf~~~rR~~Vi~Yv~~kYG~~~VaqI~Tf~T~~ak~AirDv~Rvlg~~~~~~d~~~k~ip~~~~--~~~--- 461 (1046)
T PRK05672 387 DEPPDIDVDFEHDRREEVIQYVYRRYGRDRAAQVANVITYRPRSAVRDVAKALGLSPGQVDAWAKQVSRWSG--SAD--- 461 (1046)
T ss_pred cCCCceeeecccccHHHHHHHHHHHhCcccEEEEeehhhhHHHHHHHHHHHHhCCCHHHHHHHHHhCCCccc--ccc---
Confidence 999999999999999999999999999999999999999999999999999999999999999999997655 222
Q ss_pred hhhChHHHHH--hhccHHHHHHHHHHHHcccccCCccccccEEEEcCCCCCccccceeeCCCCceEeeccccchhhcCCc
Q psy9396 479 IKEEPQLAER--IKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLI 556 (1149)
Q Consensus 479 ~~~~~~l~~~--~~~~~~~~~l~~~a~~leGl~r~~~~HaaGvvIs~~~l~~~~Pl~~~~~~~~~~tq~d~~~~e~~GLl 556 (1149)
.++.+++. ...++..++++++|++|||+|||+|+||||||||++||+++|||+.+++++.++|||||+++|++|||
T Consensus 462 --~~~~l~~~~~~~~~~~~~~l~~~a~~leGl~R~~g~HAaGvVIs~~~L~~~vPl~~~~~~~~~~tQ~d~~~~E~~GLl 539 (1046)
T PRK05672 462 --DLQRLRQAGLDPESPIPRRVVELAAQLIGFPRHLSQHSGGFVICDRPLARLVPVENAAMEGRSVIQWDKDDCAAVGLV 539 (1046)
T ss_pred --ccHHHHHhhccccCHHHHHHHHHHHHhcCCCCCCCcCCCEEEEeCCcccccCCeeecCCCCceEEEeecHHHHhcCCc
Confidence 34566654 24577789999999999999999999999999999999999999997766578999999999999999
Q ss_pred ceeccCCCcHHHHHHHHHHHHhhcCCCCCcCCCCCCCCCHHHHHHHhcCCcCccccCCCHhHHHHHHhcCCCCHHHHHHH
Q psy9396 557 KFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIAL 636 (1149)
Q Consensus 557 K~D~LGl~~Ltii~~~~~~i~~~~~~~~~id~~~ip~dD~~t~~ll~~g~T~GvFQ~ES~gm~~~l~~~~P~~f~dl~a~ 636 (1149)
|||||||+|||+|++++++|+++++ .++|+++||+||++||+||++|+|.|||||||+|||++|++++|++|+||+|+
T Consensus 540 K~D~LGL~~LtiI~~~~~~i~~~~g--~~~d~~~ipldD~~t~~ll~~g~T~GvFQlES~g~r~~l~~~~P~~fedlva~ 617 (1046)
T PRK05672 540 KVDVLALGMLSALHRAFDLIAEHRG--RRLTLASIPLDDPAVYDMLCRADSVGVFQVESRAQMAMLPRLRPRTFYDLVVE 617 (1046)
T ss_pred ccccCCCCchHHHHHHHHHHHHhhC--CCCChhcCCCCcHHHHHHHhcCCccCCCccCChHHHHHHHHcCCCCHHHHHHH
Confidence 9999999999999999999998773 88999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCccc--chHHHHHhhcC-CCCCCCCcchhhccccccCeehhHHHHHHHHHHHcCCCchhhhHHHHHhCCC-ChH
Q psy9396 637 ISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK-KTS 712 (1149)
Q Consensus 637 ~aL~RPGp~~--~i~~yi~rk~g-~~v~y~~p~l~~iL~~TyGvivYQEQvM~ia~~~agfs~~eAD~lRram~KK-~~~ 712 (1149)
+||||||||+ ||++||+|||| ++++|+||.|++||++|||||||||||||||+.+||||+||||.|||||||| +.+
T Consensus 618 ~aL~RPGP~~~~~i~~yi~rk~g~e~i~y~hp~L~~iL~~TyGvivyQEQVM~ia~~~aGfs~~eAd~lRram~KKk~~~ 697 (1046)
T PRK05672 618 VAIVRPGPIQGGMVHPYLRRRNGQEPVTYPHPELEKVLERTLGVPLFQEQVMQIAIDAAGFTPGEADQLRRAMAAWRRKG 697 (1046)
T ss_pred HHhcCCcccccCcchHHHHhcCCCCCCCCCCHHHHHHHhhhccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHhccccHh
Confidence 9999999998 89999999999 9999999999999999999999999999999999999999999999999987 799
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhhHHHHHHHHHHHHHHhhcChHHHHHHhcccccCChHHHH
Q psy9396 713 EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIK 792 (1149)
Q Consensus 713 ~m~~~~~~F~~ga~~~g~~~~~a~~i~~~i~~fa~YgFnksHa~aYa~~ay~~AylK~~yP~~f~~a~l~~~~~~~~k~~ 792 (1149)
+|++++++|++||.+||++++.|++||+.|++||+||||||||+|||++||||||||+|||+|||||+||+..++.+++.
T Consensus 698 ~m~~~~~~f~~ga~~~g~~~~~a~~i~~~i~~Fa~YgFnKSHa~AYa~iayq~AylKahyP~eF~aa~l~~~~~~~~~~~ 777 (1046)
T PRK05672 698 RLERLRERLYDGMLARGYTGEFADRIFEQIKGFGEYGFPESHAASFAKLVYASSWLKCHHPAAFCAALLNSQPMGFYSPQ 777 (1046)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhhcCHHHHHHHHhhccccCchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999865667999
Q ss_pred HHHHHHHhhCCCeeeCCcccccCCCceeeeecCCCCCeEEecccccCCccHHHHHHHHHHHhcCCCCCHHHHHhhcccCC
Q psy9396 793 ILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKY 872 (1149)
Q Consensus 793 ~~~~e~~~~~gi~ilppdin~S~~~f~~~~~~~~~~~~I~~gl~~Ikgvg~~~~~~i~~~r~~g~f~~~~df~~r~~~~~ 872 (1149)
.|+.||++ +||+|+|||||+|.+.|+++.. .++++.||+||++|||||+.+++.|+++|++|||+|++|||+|++
T Consensus 778 ~~i~e~~~-~gi~vlpPdin~S~~~~~~~~~-~~~~~~I~~gl~~Ikgvg~~~~~~Iv~~R~~g~f~s~~Df~~R~~--- 852 (1046)
T PRK05672 778 QLVQDARR-HGVEVLPVDVNASGWDATLEPL-PDGGPAVRLGLRLVRGLGEEAAERIVAARARGPFTSVEDLARRAG--- 852 (1046)
T ss_pred HHHHHHHH-cCCeEcCCeeecCCCCceEeec-cCCCCcEEechhhcCCCCHHHHHHHHHHhhcCCCCCHHHHHHHhC---
Confidence 99999999 9999999999999999998610 012468999999999999999999999999999999999999986
Q ss_pred CCHHHHHHHHHcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC-CCCcccccccccCCCCCCChHHHHHHHH
Q psy9396 873 INRRIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKN-DDNNNLKEYLNYVKVPSWSKKQELIEEK 951 (1149)
Q Consensus 873 ~~~~~le~Li~~Gafd~~~~~R~~ll~~l~~~~~~~~~~~~~~~~~~q~~L-~~~~~~~~~~~~~~~~~~~~~e~l~~Ek 951 (1149)
+||+++|+||++||||+||.||++|+++++.++ .+|.+| +.... . +.++..++|+..|++.+|+
T Consensus 853 ~~~~~le~Li~~GafD~~~~~R~~ll~~l~~~~------------~~~~~lf~~~~~-~--~~~~~~~~~~~~e~l~~E~ 917 (1046)
T PRK05672 853 LDRRQLEALADAGALRSLGGDRRQALWAAGAAA------------TERLDLLPGAPA-S--EAAPALPGMSEGELVAADY 917 (1046)
T ss_pred CCHHHHHHHHHCCCCcccchhHHHHHHHHHHHH------------hccccccCCCcc-c--ccCCCCCCCChhhHHHHHH
Confidence 899999999999999999999999999988665 144444 21111 1 1346778999999999999
Q ss_pred HHhCccccccchHHHHHHHhhcccccccccCC---CCceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchHHHH
Q psy9396 952 KVLGFCLSEHIFCIYETEIRQFIPIYLSELKP---TYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYE 1028 (1149)
Q Consensus 952 E~LG~yls~HPl~~~~~~l~~~~~~~i~~l~~---~~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~~y~ 1028 (1149)
|+||||+|+||++.|+..++....++++++.. +..++++|+|+.+++++||+| |+|+++||+||.+|++|||++|+
T Consensus 918 e~lG~~ls~HPl~~~~~~l~~~~~~~~~~l~~~~~~~~v~v~g~i~~~~~~~TkkG-maf~~leD~~g~~e~~ifp~~~~ 996 (1046)
T PRK05672 918 WTTGLSLDSHPLALLRPRLDARGVVSAAELLDVEDGRRVRVAGVVTHRQRPGTASG-VTFLTLEDETGMVNVVVWPGLWE 996 (1046)
T ss_pred HHHCCcCCcCcHHHHHHHHHhhcCcCHHHHhhccCCCEEEEEEEEEEEEEecCCCc-eEEEEEecCCCCEEEEECHHHHH
Confidence 99999999999999999998877667666643 347999999999999999999 99999999999999999999999
Q ss_pred HHHhhccCCcEEEEEEEEEeeccCCceEEEEccccccHH
Q psy9396 1029 KNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINV 1067 (1149)
Q Consensus 1029 ~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~~~i~~l~~ 1067 (1149)
+++..++++.+++|+|+++++ ++..+++++++.+++.
T Consensus 997 ~~~~~l~~~~~~~v~g~v~~~--~~~~~~~~~~i~~~~~ 1033 (1046)
T PRK05672 997 RQRREALGARLLLVRGRVQNA--EGVRHLVADRLEDLSP 1033 (1046)
T ss_pred HHHHHhccCCEEEEEEEEEec--CCeEEEEEeeeechHH
Confidence 999999999999999999874 4668999999999876
No 9
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=100.00 E-value=3.6e-258 Score=2366.74 Aligned_cols=951 Identities=34% Similarity=0.525 Sum_probs=882.0
Q ss_pred ccccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhCCCeeEeeeeeeecccccCCCCccE
Q psy9396 4 QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIENKKPSRL 83 (1149)
Q Consensus 4 ~fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~GIKpIiG~Ei~v~~~~~~~~~~hl 83 (1149)
+|+|||+||.||+|||+++|++||++|+++|++++||||||||||+++|+++|+++|||||+|||+++.. +|+
T Consensus 2 ~fv~LHvHS~ySlLDg~~~~~elv~~Ak~~G~~avAITDh~~l~G~~~f~~~a~~~gIkpIiG~Ei~~~~-------~~l 74 (973)
T PRK07135 2 KLINLHTNTEYSFLSSTIKLDSLIKYAKENNLKTLVLTDHNNMFGVPKFYKLCKKNNIKPIIGLDLEVEN-------FRF 74 (973)
T ss_pred CccccccCccCcccccCCCHHHHHHHHHHcCCCEEEEecCCcHHhHHHHHHHHHHcCCeEEEeEEEEecC-------cEE
Confidence 4999999999999999999999999999999999999999999999999999999999999999998753 799
Q ss_pred EEEEcccHHHHHHHHHHHHHHHhhccCCcccccHHHHhccccCCCeEEEeCCCcchHHHHHhcCChHHHHHHHHHHHHhC
Q psy9396 84 LLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIF 163 (1149)
Q Consensus 84 llLAkN~~Gy~nL~kL~S~~~~~~~~~~~p~i~~e~L~~~~~~~glIiis~~~~g~i~~~l~~~~~~~a~~~~~~~~~~f 163 (1149)
+|||+|++||+|||+|+|.++. .|++++++|.+ +|+|++++|..|. .+.+.+.+ ++
T Consensus 75 ~LLAkn~~GY~nL~kL~S~~~~------~~~i~~~~l~~----~gli~l~~~~~g~---------~~~~~~~~----~~- 130 (973)
T PRK07135 75 ILLAKNYSGYKLLNELSSKKSK------NKEIELNDLDS----DNIIIIDHPKNGF---------YAKNKEQL----EL- 130 (973)
T ss_pred EEEECCHHHHHHHHHHHHHHhc------CCCCCHHHHhh----CCcEEEeCCCCCC---------HHHHHHHh----cc-
Confidence 9999999999999999999875 37899999976 8999999998873 23333332 22
Q ss_pred CCCeEEEEccCCCcchHHHHHHHHHHHHhcCCCEEEecCccccCccCchHHHHHHHHHcCCccccccccccCCcCCCCCC
Q psy9396 164 PDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKT 243 (1149)
Q Consensus 164 ~~~~ylEi~~~~~~~~~~~n~~l~~lA~~~~iplVatnDvhyl~~eD~~~~~vL~aI~~g~~l~~~~~~~~~~~~~~~~s 243 (1149)
++||+|+++|+... ..+| +++||++++|+++|++|.||++|++++++.+ .+|+
T Consensus 131 -~~~y~e~~~~~~~~----------------~~~~--~~~~y~~~~D~~~~~~l~~I~~~~~l~~~~~------~~~~-- 183 (973)
T PRK07135 131 -KNYYINSNDPKIEN----------------AVYV--QERKLLFAEDNEYLKILNKIGNNKEENSNFK------FFDF-- 183 (973)
T ss_pred -cceeeeeccCcccc----------------cceE--ecCCCCCHhHHHHHHHHHHHhcCCCcCcchh------hhhH--
Confidence 47999999876421 2244 5569999999999999999999999998742 2333
Q ss_pred HHHHHHHhcCh-HHHHHHHHHHHHhccccccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhCCChhhhhhhhHH
Q psy9396 244 QSEMIKLFYDI-PSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEIYKCEKLR 322 (1149)
Q Consensus 244 ~~em~~~f~~~-~~a~~nt~~ia~~c~~~~~~~~~~lP~~~~p~~~~~~~~l~~l~~~gl~~r~~~~~~~~~~~~~~~~~ 322 (1149)
.+.|.++ |+|++||++||++|++.+++.++++|+|+.|++.++++||+++|++|+++||.... ..++
T Consensus 184 ----~~~f~~~~~~al~nt~~Ia~~c~~~~~~~~~~lP~f~~p~~~~~~~~L~~l~~~gl~~ry~~~~--------~~~~ 251 (973)
T PRK07135 184 ----EKWFEDIDEKILKRTNYLVENINIEFPKKEFNLPDFDNNLGLESDLFLKKILKESVINKKAELK--------YYPN 251 (973)
T ss_pred ----HHHhhhCCHHHHHHHHHHHHhcceecccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhccCC--------CCHH
Confidence 2457666 58999999999999999999999999999999999999999999999999986421 1247
Q ss_pred HHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCCcccCCCcchhHHHHHHHhcCCccCCCCCCCcceeccCCCCCCCC
Q psy9396 323 YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMP 402 (1149)
Q Consensus 323 ~~~Rl~~EL~vI~~~gf~~YFLiv~D~v~~ak~~gi~vGpGRGSaagSlVaY~LgIT~vDPl~~~LlFERFLnpeR~smP 402 (1149)
|++||+|||+||++|||++|||||||||+|||++||+||||||||||||||||||||+||||+|||||||||||||++||
T Consensus 252 ~~~RL~~EL~vI~~~gf~~YFLIV~D~v~~Ak~~gI~vGpGRGSaAGSLVaY~LgIT~VDPl~y~LlFERFLnpeR~~mP 331 (973)
T PRK07135 252 VKERINYEYSVIKKLKFSNYFLIIWDFIKWARKNKISIGPGRGSASGSLVSYLLNITSVNPLKYDLLFERFLNPDRITMP 331 (973)
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHCCceeCCCCcchHHHHHHHHhcCCccCccccCccHHHhcCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeecCCCchHhHHHHHHHHhCcccEEEEEecccchhhhHHHHHHHhcCCCHHHHHHHHccCCCCCCCCcchHHHhhhC
Q psy9396 403 DFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482 (1149)
Q Consensus 403 DIDiDf~~~~R~~vi~yv~~kYG~~~Va~I~Tf~t~~ak~airdv~r~lg~~~~~~~~i~k~ip~~~~~~~~l~~a~~~~ 482 (1149)
|||||||++||++||+||++|||++|||||+|||||++|+|+||||||||+|+.++|+++|+||. + +|++++++++
T Consensus 332 DIDiDf~~~rR~eVi~Yv~~kYG~~~VaqI~Tf~t~~ak~Airdv~Rvlg~~~~~~d~iak~ip~--~--~~l~~~~~~~ 407 (973)
T PRK07135 332 DIDIDIQDDRRDEVIDYIFEKYGYEHCATISTFQTLGAKSAIRDVGRMLGIPESDVNAISKLIPN--N--QSLEEAYDKN 407 (973)
T ss_pred CeeeeCchhhHHHHHHHHHHHhCcccEEEEeehhhhHHHHHHHHHHHHhCCCHHHHHHHHhcCCC--C--CCHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999994 4 8999999999
Q ss_pred hHHHHHhhc--cHHHHHHHHHHHHcccccCCccccccEEEEcCCCCCccccceeeCCCCceEeeccccchhhcCCcceec
Q psy9396 483 PQLAERIKN--EEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDF 560 (1149)
Q Consensus 483 ~~l~~~~~~--~~~~~~l~~~a~~leGl~r~~~~HaaGvvIs~~~l~~~~Pl~~~~~~~~~~tq~d~~~~e~~GLlK~D~ 560 (1149)
+++++.+.+ ++.+++|+++|++|||+|||+|+||||||||++||+++|||+++.++ .++|||||+++|++|||||||
T Consensus 408 ~~~~~~~~~~~d~~~~~l~~~A~~leGl~R~~s~HAaGvVIs~~pL~~~vPl~~~~~~-~~~tQ~d~~~~E~~GLlK~D~ 486 (973)
T PRK07135 408 KSFFRELISKGDPIYKKLYKIAKKLEGLPRQSGTHAAGIIISNKPITNYVPTFESKDN-YNQVQYSMEFLEDFGLLKIDL 486 (973)
T ss_pred HHHHHhhhccccHHHHHHHHHHHHhcCCCCCCCcCCCEEEEECCcccccCCcccCCCC-CeeeeeecccHHHcCCceEEE
Confidence 999999876 48899999999999999999999999999999999999999997765 789999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhhcCCCCCc--CCCCCCCCCHHHHHHHhcCCcCccccCCCHhHHHHHHhcCCCCHHHHHHHHh
Q psy9396 561 LGLTTLSILDKTIYFIKKINTKTTNF--SLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALIS 638 (1149)
Q Consensus 561 LGl~~Ltii~~~~~~i~~~~~~~~~i--d~~~ip~dD~~t~~ll~~g~T~GvFQ~ES~gm~~~l~~~~P~~f~dl~a~~a 638 (1149)
|||+|||+|++++++|+++++ .++ |+++||+||++||+||++|+|.|||||||+|||++|++++|++|+||+|++|
T Consensus 487 LGL~~Ltvi~~~~~li~~~~~--~~~~~~~~~ipldD~~t~~ll~~g~T~GvFQlES~gmr~~L~~lkP~~feDlva~~A 564 (973)
T PRK07135 487 LGLKNLTIIKNIEEKINKELL--FDHLINFNDLPIIDKKTNNLLSNGKTEGIFQLESPGMKSTIKKVGIDSFEDIVAIIS 564 (973)
T ss_pred CCCCchHHHHHHHHHHHhhcC--CCCCcChhcCCCCcHHHHHHHhcCCccceeeeCCHHHHHHHHHcCCCCHHHHHHHHh
Confidence 999999999999999998764 554 4478999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccchHHHHHhhcC-CCCCCCCcchhhccccccCeehhHHHHHHHHHHHcCCCchhhhHHHHHhCCCChHHHHHH
Q psy9396 639 LYRPGPMDLIKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEH 717 (1149)
Q Consensus 639 L~RPGp~~~i~~yi~rk~g-~~v~y~~p~l~~iL~~TyGvivYQEQvM~ia~~~agfs~~eAD~lRram~KK~~~~m~~~ 717 (1149)
|||||||++|+.|++|||| ++++|+||.|++||++|||||||||||||||+++||||+||||.||||||||+.++|+++
T Consensus 565 LyRPGP~~~i~~yi~rk~g~e~i~y~hp~l~~IL~~TyGvivYQEQVMqia~~~agfslgeAD~LRram~KK~~~~m~~~ 644 (973)
T PRK07135 565 LYRPGPIQYIPIYAKNKKNPKNIEKIHPEYDEIVAPTYGIIIYQEQIMQIAQKVAGFSFAQADLLRRAISKKDETKLDKI 644 (973)
T ss_pred ccCCCCccchHHHHHhcCCCCCCCCCChhHHHHHHHhhhhhccHHHHHHHHHHHcCCCHHHHHHHHHHhccCCHHHHHHH
Confidence 9999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhhHHHHHHHHHHHHHHhhcChHHHHHHhcccccCChHHHHHHHHH
Q psy9396 718 RKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKD 797 (1149)
Q Consensus 718 ~~~F~~ga~~~g~~~~~a~~i~~~i~~fa~YgFnksHa~aYa~~ay~~AylK~~yP~~f~~a~l~~~~~~~~k~~~~~~e 797 (1149)
|++|++||++||++++.|++||++|++||+||||||||+|||++||||||||+|||+|||||+||+..++.+|+..|+.|
T Consensus 645 ~~~Fi~ga~~~g~~~~~a~~if~~i~~Fa~YgFnKSHa~AYa~iayqtAyLKahyP~eF~aalL~~~~~~~~k~~~~i~E 724 (973)
T PRK07135 645 KDKFIEGGIKNGYSKKVLEKIYSLIEKFADYGFNKSHAVAYATLAYKMAYYKANYPLVFYSALISNSNGSQENIKKYVKE 724 (973)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCeeeCCcccccCCCceeeeecCCCCCeEEecccccCCccHHHHHHHHHHHh-cCCCCCHHHHHhhcccCCCCHH
Q psy9396 798 AIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRR 876 (1149)
Q Consensus 798 ~~~~~gi~ilppdin~S~~~f~~~~~~~~~~~~I~~gl~~Ikgvg~~~~~~i~~~r~-~g~f~~~~df~~r~~~~~~~~~ 876 (1149)
|++ +||+|+|||||+|.+.|+++ ++.||+||++|||||+.++++|+++|+ +|||+|++|||+|++.+.+|++
T Consensus 725 ~~~-~gi~vlpPdin~S~~~~~~~------~~~Ir~gL~~Ikgvg~~~~~~Iv~~R~~~g~f~s~~Df~~R~~~~~~~k~ 797 (973)
T PRK07135 725 AKN-NGIKVYSPDINFSTENAVFD------NGKIFLPLIMIKGLGSVAIKKIIDERNKNGKYKNFFDFILRLKFIGISKS 797 (973)
T ss_pred HHH-cCCEEeCCceeccCCcceeE------CCEEEECccccCCcCHHHHHHHHHHHHhCCCCCCHHHHHHhccccCCCHH
Confidence 999 99999999999999999997 468999999999999999999999998 7999999999999998999999
Q ss_pred HHHHHHHcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC-CCCcccccccccCCCCCCChHHHHHHHHHHhC
Q psy9396 877 IINSLINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKN-DDNNNLKEYLNYVKVPSWSKKQELIEEKKVLG 955 (1149)
Q Consensus 877 ~le~Li~~Gafd~~~~~R~~ll~~l~~~~~~~~~~~~~~~~~~q~~L-~~~~~~~~~~~~~~~~~~~~~e~l~~EkE~LG 955 (1149)
++|+||++||||+|| ||++|+++++.+++.++..+++ +..+|.+| +.... ..+.+++.++|+..|+|++|||+||
T Consensus 798 ~le~Li~aGafD~~g-~r~~ll~~~~~~~~~~~~~~~~-~~~~q~~lf~~~~~--~~~~~~~~~~~~~~e~l~~Eke~LG 873 (973)
T PRK07135 798 IIEKLIKANTLRSFG-NQDTLLNNLELAKNYAETILSK-VAKNLYDDYKNFGL--DLEFILEEIERDLEEESKNEIEYLG 873 (973)
T ss_pred HHHHHHHCCCCcccC-CHHHHHHHHHHHHHHHHHHHHH-HhcCCccccccccc--ccCCCCCCCCCCHHHHHHHHHHHhc
Confidence 999999999999999 9999999999999999887777 77788777 31111 1234678899999999999999999
Q ss_pred ccccccchHHHHHHHhhcccccccccCCCCceEEEEEEEeeeEeeecCC-cEEEEEEEeCCceEEEEEchHHHHHHHhhc
Q psy9396 956 FCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNIL 1034 (1149)
Q Consensus 956 ~yls~HPl~~~~~~l~~~~~~~i~~l~~~~~v~v~G~I~~vk~~~TK~G-~mafltleD~tg~ie~vvFp~~y~~~~~~l 1034 (1149)
||+|+||++.|+..+ .++.++..+..++++|+|+++++++ |+| +|||++++|.+|++|++|||++|++++. +
T Consensus 874 ~yls~HPl~~~~~~~-----~~~~~l~~~~~~~v~g~i~~~~~~~-K~g~~maf~~~eD~~~~~e~~~F~~~~~~~~~-l 946 (973)
T PRK07135 874 MSFNAFDTNKLEKNQ-----IRLKDLRINTEYRLAIEVKNVKRLR-KANKEYKKVILSDDSVEITIFVNDNDYLLFET-L 946 (973)
T ss_pred cccCCCcHHHHHHHH-----hhHHHhcCCCeEEEEEEEEEEEEEe-eCCCeEEEEEEEECCCcEEEEEcHHHHHHHHH-h
Confidence 999999999999886 3567774445789999999999999 999 8999999999999999999999999997 6
Q ss_pred cCCcEEEEEEEEEee
Q psy9396 1035 KENELLIVSGKVLED 1049 (1149)
Q Consensus 1035 ~~~~~v~v~G~v~~~ 1049 (1149)
.++.+++|+|+.+.+
T Consensus 947 ~~~~~~~~~~~~~~~ 961 (973)
T PRK07135 947 KKGDIYEFLISKSKN 961 (973)
T ss_pred hcCCEEEEEEEEcCC
Confidence 677799999999763
No 10
>PRK05898 dnaE DNA polymerase III DnaE; Validated
Probab=100.00 E-value=9.3e-250 Score=2271.11 Aligned_cols=949 Identities=33% Similarity=0.508 Sum_probs=853.4
Q ss_pred ccccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhCCCeeEeeeeeeecccccCCCCccE
Q psy9396 4 QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIENKKPSRL 83 (1149)
Q Consensus 4 ~fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~GIKpIiG~Ei~v~~~~~~~~~~hl 83 (1149)
||+||||||+||||||+++|++||++|+++||+||||||||||||+++||++|+++|||||+|||+++.+ ..+|+
T Consensus 1 mfvhLh~hS~YSlLdg~~~~~~lv~~A~e~g~~alALTD~~nl~GaveF~~~ak~~gIkPIiG~e~~v~~-----~~~~l 75 (971)
T PRK05898 1 MFINLNTHSHYSLLSSTLSIDDIIKFALDNNQPYVCLTDLNNLYGCIEFYDKAKAHNLIPIIGLEIEYQS-----TNATL 75 (971)
T ss_pred CeeeeecCCccccccccCCHHHHHHHHHHCCCCEEEEEeCCccccHHHHHHHHHHcCCCEEEEEEEEEcC-----CCceE
Confidence 6999999999999999999999999999999999999999999999999999999999999999999864 24799
Q ss_pred EEEEcccHHHHHHHHHHHHHHHhhccCCcccccHHHHhccccCCCeEEEeCCCcchHHHHHhcCChHHHHHHHHHHHHhC
Q psy9396 84 LLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIF 163 (1149)
Q Consensus 84 llLAkN~~Gy~nL~kL~S~~~~~~~~~~~p~i~~e~L~~~~~~~glIiis~~~~g~i~~~l~~~~~~~a~~~~~~~~~~f 163 (1149)
+|||||++||+|||+|+|.++.++ ++ +|.+ |++|+||+ |..|++ .|
T Consensus 76 vLLAkn~~GY~nL~kLsS~~~~~~------~~---~L~~--~~~gLi~l--~~~g~~---------------------~~ 121 (971)
T PRK05898 76 VLYAKNYNGYLNLIKISSFIMTNK------EF---EIQD--YLDDLFIV--CKKGTF---------------------VF 121 (971)
T ss_pred EEEeCCHHHHHHHHHHHHHHHhcC------cc---cHHH--hCCCeEEE--eCchhh---------------------cc
Confidence 999999999999999999998754 11 4788 89999998 555543 13
Q ss_pred C-CCeEEEEccCCCcchHHHHHHHHHHHHhcCCCEEEecCccccCccCchHHHHHHHHHcCCccccccccccCCcCCCCC
Q psy9396 164 P-DNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242 (1149)
Q Consensus 164 ~-~~~ylEi~~~~~~~~~~~n~~l~~lA~~~~iplVatnDvhyl~~eD~~~~~vL~aI~~g~~l~~~~~~~~~~~~~~~~ 242 (1149)
+ +++|++++ +..+|+||||||||++++|+.+|++|.||++|.+++++.+. ...+++||+
T Consensus 122 ~~~~~y~~~~-------------------~~~~~lVatndv~Y~~~~D~~~~~vL~~I~~~~~l~~~~~~-~~~~~~ylk 181 (971)
T PRK05898 122 KSPNFYQTHN-------------------QNAPNAIAFNSVFYANKNDKIVFNAMLAIKNDLKIDELKNC-QDFDNNHFL 181 (971)
T ss_pred CCCcEEEecc-------------------ccCcceEEeCCCcccChhhHHHHHHHHHHhcCCCccccccc-ccCccccCC
Confidence 3 47898765 13567999999999999999999999999999999998873 345679999
Q ss_pred CHHHHHHHhcChHHHHHHHHHHHHhccccccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhCCChhhhhhhhHH
Q psy9396 243 TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEIYKCEKLR 322 (1149)
Q Consensus 243 s~~em~~~f~~~~~a~~nt~~ia~~c~~~~~~~~~~lP~~~~p~~~~~~~~l~~l~~~gl~~r~~~~~~~~~~~~~~~~~ 322 (1149)
|++||.++|+ |+|++||.+||++|++++++.+++||+|+.|++.++++||+++|++|+++||....+. ..++
T Consensus 182 s~~Em~~~f~--~~al~Nt~~Ia~~c~~~l~~~~~~lP~f~~p~g~~~~~~L~~l~~~Gl~~Ry~~~~~~------~~~~ 253 (971)
T PRK05898 182 NDNEAQSLFS--PIQLDNLNKVLNELKVEIHDLPINIIKYDKQNSIISSEILKQLCISGLNKRLNANDGQ------VKKI 253 (971)
T ss_pred CHHHHHHHhh--HHHHHhHHHHHhheEEeeccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhccCCCC------CcHH
Confidence 9999999998 7999999999999999999999999999999999999999999999999999532111 2367
Q ss_pred HHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCCcccCCCcchhHHHHHHHhcCCccCCCCCCCcceeccCCCCCCCC
Q psy9396 323 YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMP 402 (1149)
Q Consensus 323 ~~~Rl~~EL~vI~~~gf~~YFLiv~D~v~~ak~~gi~vGpGRGSaagSlVaY~LgIT~vDPl~~~LlFERFLnpeR~smP 402 (1149)
|++||+|||+||++|||+||||||||+|+|||++||+||||||||||||||||||||+||||+|||||||||||+|.+||
T Consensus 254 y~~RL~~EL~vI~~~gf~~YFLIV~D~i~~Ar~~gI~vGpGRGSAAGSLVaY~LgIT~VDPl~~~LlFERFLNpeR~smP 333 (971)
T PRK05898 254 YVKRLKYELDIINEKQFDDYFLIVYDFINFAKSNGIIIGPGRGSAAGSLIAYLLHITDIDPIKYNLIFERFLNPTRKSMP 333 (971)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHCCceeCCCCccHHHHHHHHHhcCCccCccccCCcHHHhcCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeecCCCchHhHHHHHHHHhCcccEEEEEecccchhhhHHHHHHHhcCCCHHHHHHHHccCCCCCCCCcchHHHhhhC
Q psy9396 403 DFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482 (1149)
Q Consensus 403 DIDiDf~~~~R~~vi~yv~~kYG~~~Va~I~Tf~t~~ak~airdv~r~lg~~~~~~~~i~k~ip~~~~~~~~l~~a~~~~ 482 (1149)
|||||||++||++||+||++|||++|||||+|||||++|+|+||||||||+|+.++|++||+||..++ .+++++++++
T Consensus 334 DIDiDf~~~rR~eVi~Yv~~kYG~~~VaqI~Tf~T~~aK~AiRDv~Rvlg~~~~~~d~iak~ip~~~~--~~l~~a~~~~ 411 (971)
T PRK05898 334 DIDTDIMDERRDEVVEYLFEKYGNDHVAHIITFQRIKAKMAIRDVGRILGIDLKVIDKICKNIKPDYE--EDLDLAIKKN 411 (971)
T ss_pred CcccccchhhHHHHHHHHHHHhCcccEEEEeehhhhHHHHHHHHHHHHhCCCHHHHHHHHHhCCCccc--ccHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999998777 8899999999
Q ss_pred hHHHHHhhccHHHHHHHHHHHHcccccCCccccccEEEEcCCCCCccccceeeCCCCceEeeccccchhhcCCcceeccC
Q psy9396 483 PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLG 562 (1149)
Q Consensus 483 ~~l~~~~~~~~~~~~l~~~a~~leGl~r~~~~HaaGvvIs~~~l~~~~Pl~~~~~~~~~~tq~d~~~~e~~GLlK~D~LG 562 (1149)
|++++++. ..++|+++|++|||+|||+|+||||||||++||++++||+++.++ .++|||||+++|++|||||||||
T Consensus 412 ~~l~~~~~---~~~~l~~~A~~LeGlpR~~s~HAaGvVIs~~~L~~~vPl~~~~~g-~~vtQ~d~~~lE~~GLlK~D~LG 487 (971)
T PRK05898 412 TILKEMYV---LHKELFDLAKKIINAPRQIGTHAAGVVLSNSLLTNIIPIQLGIND-RPLSQYSMEYLERFGLIKMDLLG 487 (971)
T ss_pred hhhHHHHH---HHHHHHHHHHHhcCCCCCCCcCCCEEEEeCCcccccCCceECCCC-CeEEeechhhHHHCCCeeeeecC
Confidence 99998875 367899999999999999999999999999999999999997665 68999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCCcCCCCCCCCCHHHHHHHhcCCcCccccCCCHhHHHHHHhcCCCCHHHHHHHHhccCC
Q psy9396 563 LTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRP 642 (1149)
Q Consensus 563 l~~Ltii~~~~~~i~~~~~~~~~id~~~ip~dD~~t~~ll~~g~T~GvFQ~ES~gm~~~l~~~~P~~f~dl~a~~aL~RP 642 (1149)
|+|||+|++++++|+++++ .++|+++||+||++||+||++|+|.|||||||+|||++|++++|++|+||+|++|||||
T Consensus 488 L~~LtiI~~~~~li~~~~g--~~idl~~IpldD~~t~~Ll~~G~T~GVFQlES~gm~~~l~~lkP~~feDlva~~ALyRP 565 (971)
T PRK05898 488 LKNLTIIDNVLKLIKENQN--KKIDLFNINLNDKNVFEDLAKGRTNGIFQLESPGMKKVLKKVKPQNIEDISIVSALFRP 565 (971)
T ss_pred CCchHHHHHHHHHHHHhhC--CCcCcccCCCCCHHHHHHHhcCCceeecccCCHHHHHHHHhcCCCCHHHHHHHHhhcCC
Confidence 9999999999999999874 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccchHHHHHhhcC-CCCCCCCcchhhccccccCeehhHHHHHHHHHHHcCCCchhhhHHHHHhCCCChHHHHHHHHHH
Q psy9396 643 GPMDLIKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721 (1149)
Q Consensus 643 Gp~~~i~~yi~rk~g-~~v~y~~p~l~~iL~~TyGvivYQEQvM~ia~~~agfs~~eAD~lRram~KK~~~~m~~~~~~F 721 (1149)
|||++|++||+|||| ++++|+||.|++||++|||||||||||||||+.+||||+||||.||||||||+.++|+++|++|
T Consensus 566 GP~~~i~~yi~rk~g~e~v~y~hp~l~~IL~~TyGViVYQEQVMqia~~~AgfslgeAD~lRrAmsKK~~~~m~~~k~~F 645 (971)
T PRK05898 566 GPQQNIKTFVERRFKREEFSYWNEATKKILEPTHGIIVYQEQVINLVKTIANFDIATADNFRRAISKKDEKILIQLKKDF 645 (971)
T ss_pred CcccchHHHHHhccCCCCCCCCChHHHHHhCCCCCeEeeHHHHHHHHHHHcCCChHHHHHHHHHHhcCCHhHHHHHHHHH
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhcccCCChhhHHHHHHHHHHHHHHhhcChHHHHHHhcccccCChHHHHHHHHHHHhh
Q psy9396 722 QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKT 801 (1149)
Q Consensus 722 ~~ga~~~g~~~~~a~~i~~~i~~fa~YgFnksHa~aYa~~ay~~AylK~~yP~~f~~a~l~~~~~~~~k~~~~~~e~~~~ 801 (1149)
++||++||++++.|++||++|++||+||||||||+|||++||||||||+|||+|||||+||+..++.+|+..|+.||++
T Consensus 646 i~ga~~~G~~~~~a~~if~~i~~Fa~YgFNKSHA~AYa~iaYqtAyLKahyP~eF~aalL~~~~~~~~k~~~~i~Ea~~- 724 (971)
T PRK05898 646 IEGALKNNYKQPLVNQIFEYIFSFADYGFNHSHSLAYSYISYWMAYLKHYYPLEFLSILLSHTSASKDKLLSYLNEAKE- 724 (971)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHcCCCChHHHHHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeCCcccccCCCceeeeecCCCCCeEEecccccCCccHHHHHHHHHHHhcCCCCCHHHHHhhcccCCCCHHHHHHH
Q psy9396 802 CGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSL 881 (1149)
Q Consensus 802 ~gi~ilppdin~S~~~f~~~~~~~~~~~~I~~gl~~Ikgvg~~~~~~i~~~r~~g~f~~~~df~~r~~~~~~~~~~le~L 881 (1149)
+||+|+|||||+|.+.|+++. +++.||+||++|||||+.++++|+++|++|||+||.||+.|++.+.+||+++|+|
T Consensus 725 ~gI~vlpPdIN~S~~~f~~~~----~~~~Ir~gL~~Ikgig~~~~~~I~~~R~~g~f~~~~df~~r~~~~~i~k~~le~L 800 (971)
T PRK05898 725 FNISIKKPDINYSSNSFVLDT----QKQIIRFGFNTIKGFGDELLKKIKSALQNKTFSDFISYIDALKKNNVSLSNIEIL 800 (971)
T ss_pred CCCeEeCCceeccCCCeEEec----CCCeEEecchhcCCcCHHHHHHHHHHHhcCCCCCHHHHHHHhhhcCCCHHHHHHH
Confidence 999999999999999999952 3468999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccccccccCCCCCCChHHHHHHHHHHhCcccccc
Q psy9396 882 INSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEH 961 (1149)
Q Consensus 882 i~~Gafd~~~~~R~~ll~~l~~~~~~~~~~~~~~~~~~q~~L~~~~~~~~~~~~~~~~~~~~~e~l~~EkE~LG~yls~H 961 (1149)
|++||||+||.||++|+++++.+++.++.. +.+........+..+.+..-+.+..+|....|++..|++++.|
T Consensus 801 I~aGAfD~fg~~R~~ll~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 873 (971)
T PRK05898 801 INVGTFDSFKLSRLFLLNNLPEIFEKTSLN-------GHFFELNLVGLEYAKDMSVKERFLKKEIQYLGIDLNSLNYANY 873 (971)
T ss_pred HHCCCCcccchhHHHHHHHHHHHHHHhhcc-------chhhhhhhcchhhhhhhhhhhhHHHHHHHHhheeHhhhhhccC
Confidence 999999999999999999999998776441 1010000000010011212233444444555666666777777
Q ss_pred chHHHHHHHhhcccccccccC--CC-CceEEEEEEEeeeEeeecCC-cEEEEEEEeCCceEEEEEchHHHHHHHhhccCC
Q psy9396 962 IFCIYETEIRQFIPIYLSELK--PT-YSCTVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKEN 1037 (1149)
Q Consensus 962 Pl~~~~~~l~~~~~~~i~~l~--~~-~~v~v~G~I~~vk~~~TK~G-~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~ 1037 (1149)
|......++. +...++..+. .. .+..|++.|..+|+.+||+| .|+|++.-|+++..++++|+.. +.+-..|.-+
T Consensus 874 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 951 (971)
T PRK05898 874 KNEIDYNELK-YTIKDIKEIELKNTNYETNIFAQVYEIKQSKTKNGNLSFYLETLINNKKKTITIFQHS-KYLIDEIDIG 951 (971)
T ss_pred cchhhhhhhh-hhhhhhhhhhhhcCCceeehhhhhhhhhhhhccCCCeeEEEEEecCCCceEEEEecch-HHHHHHhhcc
Confidence 7544334332 2233444443 22 27788889999999999999 8999999999999999999987 4555566655
Q ss_pred cEEE
Q psy9396 1038 ELLI 1041 (1149)
Q Consensus 1038 ~~v~ 1041 (1149)
.+++
T Consensus 952 ~~~~ 955 (971)
T PRK05898 952 GIYV 955 (971)
T ss_pred ccee
Confidence 5544
No 11
>PRK09532 DNA polymerase III subunit alpha; Reviewed
Probab=100.00 E-value=1.1e-211 Score=1955.81 Aligned_cols=826 Identities=38% Similarity=0.642 Sum_probs=773.1
Q ss_pred ccccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhCCCeeEeeeeeeeccccc----CCC
Q psy9396 4 QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIE----NKK 79 (1149)
Q Consensus 4 ~fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~GIKpIiG~Ei~v~~~~~----~~~ 79 (1149)
+|+|||+||.||+|||+++|++||++|+++|+++|||||||+|+|+++|+++|+++|||||+|||+++.++.. ...
T Consensus 2 ~Fv~LH~HS~ySlLdg~~~~~elv~~A~~~G~~aiAiTDh~~~~g~~~f~~~~~~~gik~I~G~E~~~~~~~~~~~~~~~ 81 (874)
T PRK09532 2 SFVGLHIHSDYSLLDGASQLPALVDRAIELGMPAIALTDHGVMYGAIELLKVCRNKGIKPIIGNEMYVINGDIEKQKRRR 81 (874)
T ss_pred CccccccCCcCchhhccCCHHHHHHHHHHCCCCEEEEecCCChhhHHHHHHHHHHcCCeEEEEEEEEecCCCcccccccc
Confidence 4999999999999999999999999999999999999999999999999999999999999999999975421 133
Q ss_pred CccEEEEEcccHHHHHHHHHHHHHHHhhcc----CCcccccHHHHhccccCCCeEEEeCCCcchHHHHHhcCChHHHHHH
Q psy9396 80 PSRLLLLVKNNNGYLQLCELLSKAYIENIN----YGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENF 155 (1149)
Q Consensus 80 ~~hlllLAkN~~Gy~nL~kL~S~~~~~~~~----~~~p~i~~e~L~~~~~~~glIiis~~~~g~i~~~l~~~~~~~a~~~ 155 (1149)
.+|++|||||++||+|||+|+|.+++++++ +.+|++++++|.+ |++|||++|+|..|++.+.++.++.+.|+++
T Consensus 82 ~~~lvLLAkN~~GY~NL~kL~S~a~~~~~~~~~~~~~P~i~~e~L~~--~~~gLi~lsg~~~g~~~~~l~~~~~~~a~~~ 159 (874)
T PRK09532 82 KYHQVVLAKNTQGYKNLVKLTTISHLQGVQGKGIFARPCINKELLEQ--YHEGLIVTSACLGGEIPQAILSGRPDAARKV 159 (874)
T ss_pred cceeEEEecCHHHHHHHHHHHhHHHHhcccccCccCCCcCCHHHHHh--cCCCeEEEeCCccchHHHHHhCCCHHHHHHH
Confidence 579999999999999999999999988752 3479999999999 9999999999999999999999999999999
Q ss_pred HHHHHHhCCCCeEEEEccCCCcchHHHHHHHHHHHHhcCCCEEEecCccccCccCchHHHHHHHHHcCCccccccccccC
Q psy9396 156 ARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKF 235 (1149)
Q Consensus 156 ~~~~~~~f~~~~ylEi~~~~~~~~~~~n~~l~~lA~~~~iplVatnDvhyl~~eD~~~~~vL~aI~~g~~l~~~~~~~~~ 235 (1149)
+.+|.++|+++||+|+++|+.+.+...|..++++|+++|+|+||||||||++++|+.+|++|.||++|++++++++.. +
T Consensus 160 ~~~~~~~fg~~~YLEIq~~g~~~e~~~n~~Li~lAkk~giplVATnDvhY~~~eD~~~hdvL~~i~~g~~~~~~~~~~-~ 238 (874)
T PRK09532 160 AKWYKKLFGDDFYLEIQDHGSQEDRIVNVEIVKIARELGIKIIATNDSHFISCYDVEAHDALLCIQTGKLITEDKRLR-Y 238 (874)
T ss_pred HHHHHHhcCCcEEEEeCCCCChHHHHHHHHHHHHHHHhCCCEEEccCCcccCHhHHHHHHHHHHHhCCCccCcccccc-C
Confidence 999999999999999999998888899999999999999999999999999999999999999999999999987743 4
Q ss_pred CcCCCCCCHHHHHHHhcC------hHHHHHHHHHHHHhccccccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhh
Q psy9396 236 TKEQNFKTQSEMIKLFYD------IPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNL 309 (1149)
Q Consensus 236 ~~~~~~~s~~em~~~f~~------~~~a~~nt~~ia~~c~~~~~~~~~~lP~~~~p~~~~~~~~l~~l~~~gl~~r~~~~ 309 (1149)
+++.||+|++||.++|++ +|+|++||.+||++|++.+++.++++|+|+.|++.++++||+++|++|+++||+..
T Consensus 239 ~~~~ylks~~Em~~~f~~~l~~~~~~eai~NT~~Ia~~c~~~~~~~~~~lP~f~~p~~~~~~~~L~~l~~~Gl~~ry~~~ 318 (874)
T PRK09532 239 SGTEYLKSAEEMRLLFRDHLPDDVIAEAIANTLEVADKIEPYNILGEPRIPNYPVPSGHTPDTYVEEVAWQGLLERLNCK 318 (874)
T ss_pred ChhccCCCHHHHHHHhhhhcccccHHHHHHHHHHHHHHhhhhhccCCcCCCCCCCCCCCCHHHHHHHHHHHhHHHHhccc
Confidence 567899999999999986 46999999999999999888889999999999999999999999999999999642
Q ss_pred CCChhhhhhhhHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCCcccCCCcchhHHHHHHHhcCCccCCCCCCCc
Q psy9396 310 YKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLL 389 (1149)
Q Consensus 310 ~~~~~~~~~~~~~~~~Rl~~EL~vI~~~gf~~YFLiv~D~v~~ak~~gi~vGpGRGSaagSlVaY~LgIT~vDPl~~~Ll 389 (1149)
.+. ...++|++||+|||+||++|||++|||||||+|+|||++||+||||||||||||||||||||+||||+||||
T Consensus 319 ~~~-----~~~~~y~~RLe~EL~vI~~~gf~~YFLIV~D~v~~Ar~~gi~VGpGRGSAAGSLVaY~LgIT~VDPl~~~Ll 393 (874)
T PRK09532 319 SRS-----EVEPVYKERLEYELKMLQQMGFSTYFLVVWDYIKYARDNNIPVGPGRGSAAGSLVAYCLKITNIDPVHHGLL 393 (874)
T ss_pred CCC-----CCcHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHHHHhCCceecCCcccHHHHHHHHHhcCCccCccccCCc
Confidence 111 123679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCCCCCCCCceeecCCCchHhHHHHHHHHhCcccEEEEEecccchhhhHHHHHHHhcCCCHHHHHHHHccCCCCC
Q psy9396 390 FERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKP 469 (1149)
Q Consensus 390 FERFLnpeR~smPDIDiDf~~~~R~~vi~yv~~kYG~~~Va~I~Tf~t~~ak~airdv~r~lg~~~~~~~~i~k~ip~~~ 469 (1149)
|||||||+|.+|||||||||+++|++||+||++|||++|||||+|||||++|+||||||||||+|+.++|+++|+||...
T Consensus 394 FERFLnpeR~~mPDIDiDf~~~rR~~Vi~Yv~ekYG~~~Va~I~Tf~T~~ak~airdv~rvlg~~~~~~~~i~k~ip~~~ 473 (874)
T PRK09532 394 FERFLNPERKSMPDIDTDFCIERRDEMIKYVTEKYGEDRVAQIITFNRMTSKAVLKDVARVLDIPYGEADKMAKLIPVSR 473 (874)
T ss_pred HhhccCCcCCCCCCceeecccccHHHHHHHHHHHhCcccEEEEeehhhhHHHHHHHHHHHHhCCCHHHHHHHHhcCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCcchHHHhh---hChHHHHHhhccHHHHHHHHHHHHcccccCCccccccEEEEcCCCCCccccceeeCCCCceEeecc
Q psy9396 470 GKLITLSNAIK---EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYD 546 (1149)
Q Consensus 470 ~~~~~l~~a~~---~~~~l~~~~~~~~~~~~l~~~a~~leGl~r~~~~HaaGvvIs~~~l~~~~Pl~~~~~~~~~~tq~d 546 (1149)
+.+++++++++ ..|+|++.+..++.+++|+++|.+|||+|||+|+||||||||++||+++|||+.++++ .++||||
T Consensus 474 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~lEGl~R~~g~HAaGvVIs~~~l~~~vPl~~~~~g-~~vtQ~d 552 (874)
T PRK09532 474 GKPTKLKVMISDETPEPEFKEKYDNDPRVRRWLDMAIRIEGTNKTFGVHAAGVVISSEPLDEIVPLQKNNDG-AVITQYF 552 (874)
T ss_pred CccchHHHHHhhcccCHHHHHhhhcCHHHHHHHHHHHHhCCCCCCCCcCCCEEEEeCCCccccccceECCCC-CEEEeec
Confidence 76677888887 5789999999999999999999999999999999999999999999999999998766 6899999
Q ss_pred ccchhhcCCcceeccCCCcHHHHHHHHHHHHhhcCCCCCcCCCCCCCCC-------------------HHHHHHHhcCCc
Q psy9396 547 KDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLND-------------------KDTYNLLKKANT 607 (1149)
Q Consensus 547 ~~~~e~~GLlK~D~LGl~~Ltii~~~~~~i~~~~~~~~~id~~~ip~dD-------------------~~t~~ll~~g~T 607 (1149)
|+++|++||||||||||+|||+|++++++|+++++ .++|+++||+|| ++||+||++|+|
T Consensus 553 ~~~~E~~GLlK~D~LGL~~Ltii~~~~~li~~~~~--~~id~~~ipldD~~~~~~~~~~~~~~~~~~~~~t~~ll~~g~T 630 (874)
T PRK09532 553 MEDLESLGLLKMDFLGLRNLTTIQKTADLIKENRG--VEIDLDQLPLDERKALKILAKGEAKKLPKDVQKTHKLLERGDL 630 (874)
T ss_pred cccHHHCCCeeEeecCCCchHHHHHHHHHHHHhhC--CCCChhhCCCcchhhhhccccccccCCchhhHHHHHHHhcCCe
Confidence 99999999999999999999999999999999874 789999999999 999999999999
Q ss_pred CccccCCCHhHHHHHHhcCCCCHHHHHHHHhccCCCccc--chHHHHHhhcC-CCCCCCCcchhhccccccCeehhHHHH
Q psy9396 608 VAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQV 684 (1149)
Q Consensus 608 ~GvFQ~ES~gm~~~l~~~~P~~f~dl~a~~aL~RPGp~~--~i~~yi~rk~g-~~v~y~~p~l~~iL~~TyGvivYQEQv 684 (1149)
.|||||||+|||++|++++|++|+||+|++||||||||+ ||++||+|||| ++++|+||.|++||++|||||||||||
T Consensus 631 ~GvFQlES~gmr~~l~~lkP~~feDlva~~aL~RPGP~~~g~i~~yi~rk~g~e~~~y~hp~l~~iL~~TyGv~vyQEQv 710 (874)
T PRK09532 631 EGIFQLESSGMKQIVRDLKPSNIEDISSILALYRPGPLDAGLIPKFINRKHGREPIDYEHQLLEPILNETYGVLVYQEQI 710 (874)
T ss_pred eEEeecCcHHHHHHHHHcCCCCHHHHHHHHHhcCCcccccCchHHHHhhcCCCCCCCCCCHHHHHHhccCcceEeeHHHH
Confidence 999999999999999999999999999999999999999 99999999999 999999999999999999999999999
Q ss_pred HHHHHHHcCCCchhhhHHHHHhCCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhhHHHHHHHHHH
Q psy9396 685 MQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYY 764 (1149)
Q Consensus 685 M~ia~~~agfs~~eAD~lRram~KK~~~~m~~~~~~F~~ga~~~g~~~~~a~~i~~~i~~fa~YgFnksHa~aYa~~ay~ 764 (1149)
||||+.+||||+||||.||||||||+.++|++++++|++||++||+++++|++||++|++||+||| ||+++|+.++|+
T Consensus 711 M~ia~~~agfs~~ead~lRram~kK~~~~m~~~~~~F~~ga~~~g~~~~~a~~i~~~i~~Fa~Y~~--~~~t~v~~~~yg 788 (874)
T PRK09532 711 MKMAQDLAGYSLGEADLLRRAMGKKKISEMQKHREKFIDGAAKNGVSKKVAENLFDQMVKFAEYCL--SYDTEVLTVEYG 788 (874)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCccc--cCCeeEEEeccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHhhcChHHHHHHhcccccCChHHHHHHHHHHHhhCCCeeeCCcccccCCCceeeeecCCCCCeEEecccccCCccHH
Q psy9396 765 TAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKS 844 (1149)
Q Consensus 765 ~AylK~~yP~~f~~a~l~~~~~~~~k~~~~~~e~~~~~gi~ilppdin~S~~~f~~~~~~~~~~~~I~~gl~~Ikgvg~~ 844 (1149)
++++|.|||.+|++++.+.+.++. -....+..+.. .|+ +|-++.+-..+++. +.+-..+|.+++| +.-
T Consensus 789 ~~~i~~~~~~~~~~~v~s~~~~~~-~~~~~~~~~~~-~g~---~~v~~~~~~~g~~i------~at~~h~~~t~~g-~~~ 856 (874)
T PRK09532 789 LLPIGKIVEENIECTVYSVDPNGF-VYTQPIAQWHH-RGE---QEVFEYCLEDGSII------RATKDHKFMTTDG-EML 856 (874)
T ss_pred eeeHHHhccccccceEEEEcCCCc-EEeecHHHHHH-cCC---ccceeEEcCCCCEE------EeecCCccccCCC-ccc
Confidence 999999999999999888876542 12345666777 675 47788777777666 3567789999999 767
Q ss_pred HHHHHHHHHh
Q psy9396 845 TIEAIVTERK 854 (1149)
Q Consensus 845 ~~~~i~~~r~ 854 (1149)
.+++|.+++-
T Consensus 857 ~~~~~~~~~~ 866 (874)
T PRK09532 857 PIDEIFERGL 866 (874)
T ss_pred cHHHHHHhhh
Confidence 8999998763
No 12
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.
Probab=100.00 E-value=3.7e-180 Score=1705.27 Aligned_cols=782 Identities=25% Similarity=0.382 Sum_probs=701.0
Q ss_pred ccccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhCCCeeEeeeeeeecccc--------
Q psy9396 4 QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI-------- 75 (1149)
Q Consensus 4 ~fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~GIKpIiG~Ei~v~~~~-------- 75 (1149)
+.++||+||.||.+||..+|+|+|++|+++|+++||||||+++.|+++++++|++.|||+|.|+|+++.++.
T Consensus 103 krvDLH~HT~~S~~Dg~~~~~elv~~A~~~Gl~aiAITDH~~~~~~~~~~~~~~~~~ikvI~GvE~~~~~d~~~~v~n~~ 182 (1213)
T TIGR01405 103 KRVELHFHTKMSQMDAITSVQEYVKQAKKWGHKAIAITDHGVVQAFPEAYKAAKKDGIKIIYGMEANLVDDRVPIVYNPD 182 (1213)
T ss_pred ceEEeeeCccCcccccCCCHHHHHHHHHHCCCCEEEEecCCCccCHHHHHHHHHhcCCEEEEEEEEEeecccchhhcCcc
Confidence 579999999999999999999999999999999999999999999999999999999999999999763210
Q ss_pred --------------------------------------------------------------------------------
Q psy9396 76 -------------------------------------------------------------------------------- 75 (1149)
Q Consensus 76 -------------------------------------------------------------------------------- 75 (1149)
T Consensus 183 ~~~l~~~~~~VVfDiETTGL~~~~d~IIEIGAVkv~~g~iid~f~~~V~P~~~I~~~~~~ltGIT~e~L~~ap~~~evl~ 262 (1213)
T TIGR01405 183 DQKLLDDATYVVFDIETTGLSPQYDEIIEFGAVKVKNGRIIDKFQFFIKPHEPLSAFVTELTGITQDMLENAPEIEEVLE 262 (1213)
T ss_pred ccccccCCcEEEEEeEecCCCCCCCeEEEEEEEEEECCeEEEEEEEEECCCCCCCHHHHHHhCCCHHHHhCCCCHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy9396 76 -------------------------------------------------------------------------------- 75 (1149)
Q Consensus 76 -------------------------------------------------------------------------------- 75 (1149)
T Consensus 263 ~f~~fl~~~iLVaHNa~FD~~fL~~~~~r~g~~~~~~~~IDTl~lar~l~p~~k~~kL~~Lak~lgi~~~~~HrAl~DA~ 342 (1213)
T TIGR01405 263 KFKEFFKDSILVAHNASFDIGFLNTNFEKVGLEPLENPVIDTLELARALNPEYKSHRLGNICKKLGVDLDDHHRADYDAE 342 (1213)
T ss_pred HHHHHhCCCeEEEEChHHHHHHHHHHHHHcCCCccCCCEeEHHHHHHHHhccCCCCCHHHHHHHcCCCCCCCcCHHHHHH
Confidence
Q ss_pred ----------------------------------cCCCCccEEEEEcccHHHHHHHHHHHHHHHhhccCCcccccHHHHh
Q psy9396 76 ----------------------------------ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLE 121 (1149)
Q Consensus 76 ----------------------------------~~~~~~hlllLAkN~~Gy~nL~kL~S~~~~~~~~~~~p~i~~e~L~ 121 (1149)
...+++|+++||||++||+||++|+|.++++++++ .|++++++|.
T Consensus 343 aTa~I~~~ll~~l~~~~i~~~~~l~~~~~~~~~~~k~~~~hl~lLAkn~~G~~nL~kLvS~a~~~~f~~-~Pri~~~~L~ 421 (1213)
T TIGR01405 343 ATAKVFKVMVEQLKEKGITNLEELNNKLSSEELYKRLRPNHIIIYAKNQAGLKNLYKLVSISLTKYFYT-RPRILRSLLK 421 (1213)
T ss_pred HHHHHHHHHHHHHHHcCCccHHHHHHhhccchhhhhcCCcceEEEEechhhHHHHHHHHHHHHHcCCCC-CcccCHHHHH
Confidence 00145799999999999999999999999988764 7999999999
Q ss_pred ccccCCCeEEEeCCCcchHHHHHhcCChHHHHHHHHHHHHhCCCCeEEEEccCCC-------------cchHHHHHHHHH
Q psy9396 122 KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQ-------------PNMNFQIQQFIN 188 (1149)
Q Consensus 122 ~~~~~~glIiis~~~~g~i~~~l~~~~~~~a~~~~~~~~~~f~~~~ylEi~~~~~-------------~~~~~~n~~l~~ 188 (1149)
+ |++|||++|||..|++.+++++++.+++.+++.+|. |+|+|+++. +.++.+|+.+++
T Consensus 422 ~--~~egLi~~s~c~~ge~~~~~~~~~~~~~~~~~~~yd-------ylEiq~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 492 (1213)
T TIGR01405 422 K--YREGLLIGSACSEGELFDALLSKPDDELEEIAKRYD-------FIEIQPPGNYAHLIEREQVKDKEALKEIIKKLIE 492 (1213)
T ss_pred h--hCCCeEEEcCCccCHHHHHHHcCCHHHHHHHHHhcC-------EEEeCCCCCcchhccccccCCcHHHHHHHHHHHH
Confidence 9 999999999999999999999999998888777662 999999873 345789999999
Q ss_pred HHHhcCCCEEEecCccccCccCchHHHHHHHHHcC-CccccccccccCCcCCCCCCHHHHHHHhcChHH------HHHHH
Q psy9396 189 IASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEG-EILSNTKRIKKFTKEQNFKTQSEMIKLFYDIPS------AIQNT 261 (1149)
Q Consensus 189 lA~~~~iplVatnDvhyl~~eD~~~~~vL~aI~~g-~~l~~~~~~~~~~~~~~~~s~~em~~~f~~~~~------a~~nt 261 (1149)
+|+++|+|+||||||||++++|+.+|++|.|++.+ .+++++.+ ...++++||+|++||.+.|+++|+ +++||
T Consensus 493 la~~~~~p~VaT~dvhyl~~~D~~~~~il~~~~~~~~~~~~~~~-~~~~~~~y~~t~~EM~~~F~~l~~~~a~e~~i~Nt 571 (1213)
T TIGR01405 493 LAKELNKPVVATGDVHYIEPEDKIYRKILVASQGLGNPLNRHFN-PKEVPELHFRTTNEMLDEFSFLGEEKAYEIVVENT 571 (1213)
T ss_pred HHHHhCCCEEEeCCccccChhhHHHHHHHHhhhccCCccccccc-ccCCcccccCCHHHHHHHHhhcchhhhhHHHHHHH
Confidence 99999999999999999999999999999999984 46665554 234678999999999999999998 89999
Q ss_pred HHHHHhccc-cccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhCCChhhhhhhhHHHHHHHHHHHHHHHhcCCc
Q psy9396 262 IEIAKRCNL-KLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFS 340 (1149)
Q Consensus 262 ~~ia~~c~~-~~~~~~~~lP~~~~p~~~~~~~~l~~l~~~gl~~r~~~~~~~~~~~~~~~~~~~~Rl~~EL~vI~~~gf~ 340 (1149)
++||++|++ ...+.+.++|+|+ ++++||+++|++|+++||+... .+.|++||++||++|.+|||+
T Consensus 572 ~~IA~~c~~~~~~~~~~~~P~~~-----~~~~~L~~l~~~~~~~~yg~~l---------~~~v~~RLe~EL~~I~~~gf~ 637 (1213)
T TIGR01405 572 NKIADQIEEIQPIKDKLYTPKIE-----GADEKIRDLTYENAKKIYGDPL---------PEIVEQRIEKELKSIIGNGFA 637 (1213)
T ss_pred HHHHHHhhcccccCCCCCCCCCC-----CHHHHHHHHHHHHHHHHcCCCC---------cHHHHHHHHHHHHHHHhCCCc
Confidence 999999995 4444566777774 5899999999999999996432 257999999999999999999
Q ss_pred hhhHHHHHHHHHHHhCCCcccCCCcchhHHHHHHHhcCCccCCCC-----------------------------------
Q psy9396 341 GYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLS----------------------------------- 385 (1149)
Q Consensus 341 ~YFLiv~D~v~~ak~~gi~vGpGRGSaagSlVaY~LgIT~vDPl~----------------------------------- 385 (1149)
+|||||||+|+|||++||+||| ||||||||||||||||+||||+
T Consensus 638 ~yfLIv~dlV~~a~~~gi~VG~-RGS~agSlVAy~lgITeVdPL~phy~c~~c~~~ef~~~~~~~sg~dlp~k~cp~c~~ 716 (1213)
T TIGR01405 638 VIYLISQLLVQKSLQDGYLVGS-RGSVGSSLVATMTGITEVNPLPPHYLCPNCKYSEFITDGSVGSGFDLPDKDCPKCGA 716 (1213)
T ss_pred hhHHHHHHHHHHHHHCCceECC-CCcHHHHHHHHHhcCCCcCCCcccccCcccccccccccccccccccCccccCccccc
Confidence 9999999999999999999999 9999999999999999999999
Q ss_pred ------CCCcceeccCCCCCCCCCceeecCCCchHhHHHHHHHHhCcccEEEEEecccchhhhHHHHHHHhcCCCHHHHH
Q psy9396 386 ------YNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCD 459 (1149)
Q Consensus 386 ------~~LlFERFLnpeR~smPDIDiDf~~~~R~~vi~yv~~kYG~~~Va~I~Tf~t~~ak~airdv~r~lg~~~~~~~ 459 (1149)
|||+|||||||+|.+|||||||||+++|++|++||+++||++||+||+||||+++|+|+.+|.+.+.
T Consensus 717 ~~~~dg~~L~FErFLn~er~~~PDIDldF~~~~r~~v~~Yv~~~yG~~~V~~i~T~~t~a~k~A~~~v~~~~e------- 789 (1213)
T TIGR01405 717 PLKKDGQDIPFETFLGFKGDKVPDIDLNFSGEYQAKAHNYVKELFGEDHTFRAGTIGTVAEKTAYGYVKKYFE------- 789 (1213)
T ss_pred cccccCCCceeeeccCCCCCCCCCCcccCccccHHHHHHHHHHHhCcccEEEeehHHHHHHhhhhhHHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999999999999999877655431
Q ss_pred HHHccCCCCCCCCcchHHHhhhChHHHHHhhccHHHHHHHHHHHHcccccCCccccccEEEEcCC--CCCccccceeeCC
Q psy9396 460 SISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPS--KLINFCPLYKQEG 537 (1149)
Q Consensus 460 ~i~k~ip~~~~~~~~l~~a~~~~~~l~~~~~~~~~~~~l~~~a~~leGl~r~~~~HaaGvvIs~~--~l~~~~Pl~~~~~ 537 (1149)
. .+ . ...+ .+++++|++|||+|||+|+|||||||+|+ ||++++||+.+++
T Consensus 790 ~--------~~----------------~-~~~~---~~~~~la~~leG~~R~tg~HagGiVI~p~~~~l~~~~Pl~~~a~ 841 (1213)
T TIGR01405 790 D--------QG----------------K-HYRD---AEIERLVQGCTGVKRTTGQHPGGIIIVPKYMDVYDFTPVQYPAD 841 (1213)
T ss_pred H--------hc----------------c-ccCC---HHHHHHHHHhcCCCCccCccCCEEEEeCCCCccceeccceecCC
Confidence 0 00 0 0112 25899999999999999999999999987 6999999998653
Q ss_pred ---CCceEeeccccchhhcCCcceeccCCCcHHHHHHHHHHHHhhcCCCCCcCCCCCCCCCHHHHHHHhcCCcCccc--c
Q psy9396 538 ---MTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVF--Q 612 (1149)
Q Consensus 538 ---~~~~~tq~d~~~~e~~GLlK~D~LGl~~Ltii~~~~~~i~~~~~~~~~id~~~ip~dD~~t~~ll~~g~T~GvF--Q 612 (1149)
+++.+|||||+++|+ ||||||||||+|||+|+.+.+ . ..+|+.+||+|||+||+||++|+|.||| |
T Consensus 842 ~~~~~~~~Tqfd~~~ie~-gLlKlD~LGl~~lT~i~~l~~----~----~~id~~~IP~dD~~t~~lf~~~~t~Gvf~~q 912 (1213)
T TIGR01405 842 DTNSDWKTTHFDFHSIHD-NLLKLDILGHDDPTMIKMLQD----L----TGIDPKTIPMDDKEVMSIFSSPKALGVTPEE 912 (1213)
T ss_pred CCCCCceEEeechhHhhc-CCeeeeecCCCchHHHHHHHH----h----cCCCHHHCCCCCHHHHHHHhcCCccccCHHH
Confidence 347899999999999 999999999999999996543 2 2489999999999999999999999999 7
Q ss_pred CCC-Hh-----------HHHHHHhcCCCCHHHHHHHHhccCCCcccchHHHHHhhcCCCCCCCCcchhhccccccCeehh
Q psy9396 613 LES-QG-----------MKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYFNYPDPRTKDVLSETYGIMVY 680 (1149)
Q Consensus 613 ~ES-~g-----------m~~~l~~~~P~~f~dl~a~~aL~RPGp~~~i~~yi~rk~g~~v~y~~p~l~~iL~~TyGvivY 680 (1149)
+|| .| ||+||+++||++|+|||+++||||| ++.|+++++ +.+.+.||.|+++|++|||||+|
T Consensus 913 i~s~~G~~gipefgt~f~r~mL~~~kP~~F~dLv~i~gL~~g-----~~v~~~n~~-~~i~~~~~~l~~vi~~~~~im~y 986 (1213)
T TIGR01405 913 ILEKTGTLGIPEFGTKFVRGMLEETKPKTFADLVRISGLSHG-----TDVWLGNAQ-DLIKSGIKTLSDVIGCRDDIMVY 986 (1213)
T ss_pred hcCccccccccccCcHHHHHHHHHcCCCCHHHhheeecccCC-----CchhhccCc-ccccCCCCChhhcccccCCeEEe
Confidence 755 34 9999999999999999999999998 457888766 67889999999999999999999
Q ss_pred HHHHHHHHHHHcCCCchhh----hHHHHHhCCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhhHH
Q psy9396 681 QEQVMQIAQILGGYSLGQA----DLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHAT 756 (1149)
Q Consensus 681 QEQvM~ia~~~agfs~~eA----D~lRram~KK~~~~m~~~~~~F~~ga~~~g~~~~~a~~i~~~i~~fa~YgFnksHa~ 756 (1149)
| .++||++++| |.+|| |||+.++| ++||.++|++++ .|+.++++ +|||||||||
T Consensus 987 l--------~~~g~~~~~A~~iMe~vRk--gk~~~~~~-------~~~~~~~gv~~~----~i~~~~ki-~Y~F~KsHA~ 1044 (1213)
T TIGR01405 987 L--------IHKGLEPKLAFKIMEKVRK--GKGLKAEY-------IELMKENKVPEW----YIESCLKI-KYMFPKAHAA 1044 (1213)
T ss_pred h--------hhcCCChHHhHHHHHHHHc--CCCCcHHH-------HHHHHHcCCCHH----HHHHHHHh-ccCCChhHHH
Confidence 7 4689999999 89999 77776655 458999999986 47788775 8999999999
Q ss_pred HHHHHHHHHHHHhhcChHHHHHHhcccccCChH-------------------------------H----HHHHHHHHHhh
Q psy9396 757 AYALLSYYTAYLKTHYSSFFMAANLSLSMDDTN-------------------------------K----IKILVKDAIKT 801 (1149)
Q Consensus 757 aYa~~ay~~AylK~~yP~~f~~a~l~~~~~~~~-------------------------------k----~~~~~~e~~~~ 801 (1149)
|||++||||||||+|||+|||||+||+..+++| | +..++.||++
T Consensus 1045 AY~~~ay~~AylK~hyP~eFyaa~ls~~~~~~d~~~~~~g~~~~~~~~~~~~~~~~~~~~~~kek~~~~~~~~~~E~~~- 1123 (1213)
T TIGR01405 1045 AYVLMAWRIAYFKVHYPLEYYAAYFSIRAKAFDLETMIKGKEFIKQKLEEINTRRKINKASPKEKDLLTVLEIVLEMMA- 1123 (1213)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHhcccccccccHHhhhccHHHHHHHHHHHhhcccccccchhhhhhhhHHHHHHHHHH-
Confidence 999999999999999999999999999876643 2 7789999999
Q ss_pred CCCeeeCCcccccCC-CceeeeecCCCCCeEEecccccCCccHHHHHHHHHHHhcCCCCCHHHHHhhcccCCCCHHHHHH
Q psy9396 802 CGLSILPPNINLSKY-YFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINS 880 (1149)
Q Consensus 802 ~gi~ilppdin~S~~-~f~~~~~~~~~~~~I~~gl~~Ikgvg~~~~~~i~~~r~~g~f~~~~df~~r~~~~~~~~~~le~ 880 (1149)
+||+|+|||||+|.+ .|.++ +++||+||++|||||+.+|++|+++|+.|||+|++||++|. .+||+++|.
T Consensus 1124 rGi~vlppdin~S~~~~f~i~------~~~I~~~l~aI~glg~~~a~~Iv~~R~~g~F~s~~Df~~R~---~v~k~~le~ 1194 (1213)
T TIGR01405 1124 RGFKFQPIDLYKSQATEFLIE------GNTLIPPFNAIPGLGENVANSIVEARNEKPFLSKEDLKKRT---KISKTHIEK 1194 (1213)
T ss_pred cCCeEeCCcccccCCceeEee------CCEEEeehhhcCCCCHHHHHHHHHHHhhCCCCCHHHHHHHh---CCCHHHHHH
Confidence 999999999999998 79987 46899999999999999999999999989999999999994 699999999
Q ss_pred HHHcCCCCCcchh
Q psy9396 881 LINSGAFDCFNEK 893 (1149)
Q Consensus 881 Li~~Gafd~~~~~ 893 (1149)
||++||||+|+.+
T Consensus 1195 L~~~Ga~d~l~~~ 1207 (1213)
T TIGR01405 1195 LDSMGVLDNLPET 1207 (1213)
T ss_pred HHhCCCCcCCCcc
Confidence 9999999999854
No 13
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=100.00 E-value=3.4e-173 Score=1656.58 Aligned_cols=784 Identities=24% Similarity=0.357 Sum_probs=700.2
Q ss_pred ccccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhCCCeeEeeeeeeecccc--------
Q psy9396 4 QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI-------- 75 (1149)
Q Consensus 4 ~fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~GIKpIiG~Ei~v~~~~-------- 75 (1149)
.+++||+||.+|.+||.++|+++|++|+++|++|||||||+++.|+++++++|++.|||+|+|+|+++.++.
T Consensus 333 KrvdLH~HT~~S~~Dg~~~~~elv~~A~~~G~~aIAITDH~~v~~~p~a~~~~k~~gikvI~GvE~~~~~~~~~iv~~~~ 412 (1437)
T PRK00448 333 KRVELHLHTKMSTMDAIPSVSELVKRAAKWGHKAIAITDHGVVQAFPEAYNAAKKAGIKVIYGVEANLVDDGVPIVYNEV 412 (1437)
T ss_pred ceEEecccccCcccccCCCHHHHHHHHHHCCCCEEEEecCCCCcCHHHHHHHHHhcCCceEeeeeEEEeccceeEEecCC
Confidence 578999999999999999999999999999999999999999999999999999999999999999873100
Q ss_pred --------------------------------------------------------------------------------
Q psy9396 76 -------------------------------------------------------------------------------- 75 (1149)
Q Consensus 76 -------------------------------------------------------------------------------- 75 (1149)
T Consensus 413 ~~~L~~~~~VVfDLETTGL~~~~deIIEIgAV~V~~G~iie~F~~~V~P~~~I~~~~~~LTGIT~e~L~~aps~~EaL~~ 492 (1437)
T PRK00448 413 DRDLKDATYVVFDVETTGLSAVYDEIIEIGAVKIKNGEIIDKFEFFIKPGHPLSAFTTELTGITDDMVKDAPSIEEVLPK 492 (1437)
T ss_pred chhhccCcEEEEEhhhcCCCCchhhhheeeeEEEeCCeEeeeEEEEECCCCCCCHHHHHHhCCCHHHHcCCCCHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy9396 76 -------------------------------------------------------------------------------- 75 (1149)
Q Consensus 76 -------------------------------------------------------------------------------- 75 (1149)
T Consensus 493 f~~figg~vLVAHNa~FD~~fL~~~l~rlgl~~l~~~~IDTLelar~l~p~~k~~kL~~LAk~lGL~~~~~HrAl~DA~a 572 (1437)
T PRK00448 493 FKEFCGDSILVAHNASFDVGFINTNYEKLGLEKIKNPVIDTLELSRFLYPELKSHRLNTLAKKFGVELEHHHRADYDAEA 572 (1437)
T ss_pred HHHHhCCCEEEEeCccccHHHHHHHHHHcCCccccccceeHHHHHHHHcCccccccHHHHHHHcCCCCCCCcChHHHHHH
Confidence
Q ss_pred ---------------------------------cCCCCccEEEEEcccHHHHHHHHHHHHHHHhhccCCcccccHHHHhc
Q psy9396 76 ---------------------------------ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122 (1149)
Q Consensus 76 ---------------------------------~~~~~~hlllLAkN~~Gy~nL~kL~S~~~~~~~~~~~p~i~~e~L~~ 122 (1149)
...+++|+++||||++||+||++|+|.++++++++ .|++++++|.+
T Consensus 573 Ta~lf~~ll~~l~~~gi~~~~~L~~~~~~~~~~~~~~~~h~~llAkn~~G~knL~kLvS~s~~~~f~~-~Pri~~~~L~~ 651 (1437)
T PRK00448 573 TAYLLIKFLKDLKEKGITNLDELNKKLGSEDAYKKARPKHATILVKNQVGLKNLFKLVSLSNTKYFYR-VPRIPRSLLDK 651 (1437)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHhccccchhccCcccceEEeCCHHHHHHHHHHHHHHHHhcCCC-CCcCCHHHHHh
Confidence 00136799999999999999999999999988754 79999999999
Q ss_pred cccCCCeEEEeCCCcchHHHHHhcCChHHHHHHHHHH--HHhCCCCeEEEEccCCC--cc--hHHHHHHHHHHHHhcCCC
Q psy9396 123 NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRW--SKIFPDNFYIEIQRFKQ--PN--MNFQIQQFINIASNINLP 196 (1149)
Q Consensus 123 ~~~~~glIiis~~~~g~i~~~l~~~~~~~a~~~~~~~--~~~f~~~~ylEi~~~~~--~~--~~~~n~~l~~lA~~~~ip 196 (1149)
|++|||++|+|..|++.++++.++.+++.+++.+| .++++.++|+|+++++. .. .+.+|+.++++|+++|+|
T Consensus 652 --~~egLii~s~c~~gel~~~~~~~~~~~~~~~~~~ydy~ei~p~~~~~~l~~~~~~~~~~~~~~~~~~l~~la~~~~~p 729 (1437)
T PRK00448 652 --YREGLLIGSACEEGEVFDAVLQKGDEELEEIAKFYDYIEIQPPANYQHLIERELVKDEEELKEIIKNLIELGKKLNKP 729 (1437)
T ss_pred --hCCCcEEEcCCcccHHHHHHHcCCHHHHHHHHHHhhHHHhcCcceehhhhhcCCCCchhHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999988885 79999889999999875 22 267899999999999999
Q ss_pred EEEecCccccCccCchHHHHHHHHHcCCccccccccccCCcCCCCCCHHHHHHHhcChHH------HHHHHHHHHHhcc-
Q psy9396 197 IVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIPS------AIQNTIEIAKRCN- 269 (1149)
Q Consensus 197 lVatnDvhyl~~eD~~~~~vL~aI~~g~~l~~~~~~~~~~~~~~~~s~~em~~~f~~~~~------a~~nt~~ia~~c~- 269 (1149)
+|||+||||++++|+.+|++|.|++.+.... .+ ...+++||+|++||.+.|+.+|+ +++||++||++|+
T Consensus 730 vVAT~dvhyl~~~D~~~~~il~~~~~~~~~~--~~--~~~~~~yl~tt~EM~~~f~~l~~~~~~e~vi~Nt~~Ia~~~~~ 805 (1437)
T PRK00448 730 VVATGDVHYLDPEDKIYRKILVASQGGGNPL--NR--HPLPELHFRTTDEMLDEFAFLGEELAKEIVVENTNKIADLIEE 805 (1437)
T ss_pred EEEecCccccCHhHHHHHHHHHHhhcCCCcc--cc--ccCCccccCCHHHHHHHhhhcchhhhHHHHHHHHHHHHHhcce
Confidence 9999999999999999999999998765432 12 34578999999999999999988 8999999999999
Q ss_pred ccccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhCCChhhhhhhhHHHHHHHHHHHHHHHhcCCchhhHHHHHH
Q psy9396 270 LKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDF 349 (1149)
Q Consensus 270 ~~~~~~~~~lP~~~~p~~~~~~~~l~~l~~~gl~~r~~~~~~~~~~~~~~~~~~~~Rl~~EL~vI~~~gf~~YFLiv~D~ 349 (1149)
+.....+.++|+|+ +++++|+++|++|+++||+... .+.|++||++||++|.+|||++|||||||+
T Consensus 806 i~~~~~~~~~P~~~-----~a~~~L~~l~~~~a~~~yg~~l---------p~~v~~RLe~EL~~I~~~gf~~yflIv~~l 871 (1437)
T PRK00448 806 IEPIKDKLYTPKIE-----GAEEEIRELTYKKAHEIYGEPL---------PEIVEKRIEKELNSIIGNGFAVIYLISQKL 871 (1437)
T ss_pred ecccCCCCCCCCCC-----CHHHHHHHHHHHHHHHHhCCCC---------cHHHHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 44444556677663 6899999999999999996432 257999999999999999999999999999
Q ss_pred HHHHHhCCCcccCCCcchhHHHHHHHhcCCccCCCC-----------------------------------------CCC
Q psy9396 350 IQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLS-----------------------------------------YNL 388 (1149)
Q Consensus 350 v~~ak~~gi~vGpGRGSaagSlVaY~LgIT~vDPl~-----------------------------------------~~L 388 (1149)
|+||+++||+||| ||||||||||||||||+||||+ |||
T Consensus 872 V~~a~~~g~lVG~-RGS~~gSlVAy~lgITeVdPL~phy~C~~C~~~ef~~~~~~~sG~Dlpdk~Cp~Cg~~~~kdg~~l 950 (1437)
T PRK00448 872 VKKSLEDGYLVGS-RGSVGSSFVATMIGITEVNPLPPHYVCPNCKYSEFFTDGSVGSGFDLPDKDCPKCGTKLKKDGHDI 950 (1437)
T ss_pred HHHHHHCCceECC-CCcHHHHHHHHHhcCCCcCCCCccccCcccccccccccccccccccCccccCccccccccccCCCc
Confidence 9999999999999 9999999999999999999997 999
Q ss_pred cceeccCCCCCCCCCceeecCCCchHhHHHHHHHHhCcccEEEEEecccchhhhHHHHHHHhcCCCHHHHHHHHccCCCC
Q psy9396 389 LFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFK 468 (1149)
Q Consensus 389 lFERFLnpeR~smPDIDiDf~~~~R~~vi~yv~~kYG~~~Va~I~Tf~t~~ak~airdv~r~lg~~~~~~~~i~k~ip~~ 468 (1149)
+|||||||+|.+|||||||||+++|++|++||+++||++|||||+||||+++|+|+++|-+... .
T Consensus 951 ~FErFL~~~r~~~PDIDldF~~~~r~~v~~Yv~~~yG~~~v~~~~T~~T~a~k~A~g~v~~~~e---------------~ 1015 (1437)
T PRK00448 951 PFETFLGFKGDKVPDIDLNFSGEYQPVAHNYTKVLFGEDHVFRAGTIGTVAEKTAYGYVKKYEE---------------D 1015 (1437)
T ss_pred eeeeccCCCCCCCCCCcccCccccHHHHHHHHHHHhCcccEEEEeehhhhHHHHHHHHHHhhhc---------------c
Confidence 9999999999999999999999999999999999999999999999999999999876544210 0
Q ss_pred CCCCcchHHHhhhChHHHHHhhccHHHHHHHHHHHHcccccCCccccccEEEEcCC--CCCccccceeeCCC---CceEe
Q psy9396 469 PGKLITLSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPS--KLINFCPLYKQEGM---TGIIS 543 (1149)
Q Consensus 469 ~~~~~~l~~a~~~~~~l~~~~~~~~~~~~l~~~a~~leGl~r~~~~HaaGvvIs~~--~l~~~~Pl~~~~~~---~~~~t 543 (1149)
.+ . ... ..+++++|+++||+|||+|+|||||||+|. +|.+++||+.++++ ++.+|
T Consensus 1016 ~~--~---------------~~~---~~~i~~la~~~eG~~R~tg~HagGivI~p~~~~i~~~~P~~~~a~~~~~~~~tT 1075 (1437)
T PRK00448 1016 TG--K---------------FYR---NAEIDRLAQGCTGVKRTTGQHPGGIIVVPKYMDIYDFTPIQYPADDVNSEWKTT 1075 (1437)
T ss_pred cc--c---------------ccC---cHHHHHHHHHhCCCCCCCCCCCCEEEEECCCCccceeecceecCCCCCCCceEE
Confidence 00 0 001 236999999999999999999999999987 58899999987543 47899
Q ss_pred eccccchhhcCCcceeccCCCcHHHHHHHHHHHHhhcCCCCCcCCCCCCCCCHHHHHHHhcCCcCccc--cCCCH-----
Q psy9396 544 QYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVF--QLESQ----- 616 (1149)
Q Consensus 544 q~d~~~~e~~GLlK~D~LGl~~Ltii~~~~~~i~~~~~~~~~id~~~ip~dD~~t~~ll~~g~T~GvF--Q~ES~----- 616 (1149)
||||+++|+ ||||||||||+|||+|+.+.++ ..+|+.+||+|||+||+||++|+|.||| |+||+
T Consensus 1076 qfd~~~ie~-~LlKlD~LGl~~lT~i~~l~~~--------~gid~~~Ip~dD~~t~~lf~~~~tlGvf~~qi~s~~G~~g 1146 (1437)
T PRK00448 1076 HFDFHSIHD-NLLKLDILGHDDPTMIRMLQDL--------TGIDPKTIPMDDPKVMKLFSSTEALGVTPEQIGCETGTLG 1146 (1437)
T ss_pred Eecchhhhc-CceeeeecCCCchHHHHHHHHh--------hCCCHHHCCCCCHHHHHHHhcCCccccCHHHhCCccCccc
Confidence 999999999 9999999999999999976553 3489999999999999999999999999 88774
Q ss_pred -------hHHHHHHhcCCCCHHHHHHHHhccCCCcc--cchHHHHHhhcCCCCCCCCcchhhccccccCeehhHHHHHHH
Q psy9396 617 -------GMKNMLKEAKPDYFEEIIALISLYRPGPM--DLIKNFCRRKHGEYFNYPDPRTKDVLSETYGIMVYQEQVMQI 687 (1149)
Q Consensus 617 -------gm~~~l~~~~P~~f~dl~a~~aL~RPGp~--~~i~~yi~rk~g~~v~y~~p~l~~iL~~TyGvivYQEQvM~i 687 (1149)
+||+||++++|++|+|||+++||+||||. +++++||+++ ++.|++||++|||||+||.
T Consensus 1147 ipefgt~f~r~mL~~~kP~~F~dLv~isgL~~g~~vwl~na~~~i~~~--------~~~l~~vi~~r~~Im~yli----- 1213 (1437)
T PRK00448 1147 IPEFGTKFVRQMLEETKPKTFAELVQISGLSHGTDVWLGNAQELIKEG--------IATLSDVIGCRDDIMVYLI----- 1213 (1437)
T ss_pred ccccCcHHHHHHHHHcCCCCHHHHHhHhccCCCCchhhhcchhhccCC--------CcChhhhhcccCCeEEEhh-----
Confidence 49999999999999999999999999994 6888888775 3579999999999999982
Q ss_pred HHHHcCCCchhh----hHHHHHhCCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhhHHHHHHHHH
Q psy9396 688 AQILGGYSLGQA----DLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSY 763 (1149)
Q Consensus 688 a~~~agfs~~eA----D~lRram~KK~~~~m~~~~~~F~~ga~~~g~~~~~a~~i~~~i~~fa~YgFnksHa~aYa~~ay 763 (1149)
.+||++++| |.+||++|++ ++|++++.++|++++ +++.|++ ++||||||||||||++||
T Consensus 1214 ---~~g~~~~~Af~IMe~vRkgk~~~---------~~~~~~~~~~~v~~~----~i~s~~k-i~Y~FpKaHA~AY~~~ay 1276 (1437)
T PRK00448 1214 ---HKGLEPKLAFKIMESVRKGKGLT---------EEEEELMKENNVPDW----YIESCKK-IKYMFPKAHAAAYVLMAW 1276 (1437)
T ss_pred ---hcCCChhhhhHHHHHHHHhCCCc---------HHHHHHHHHcCCCHH----HHHHHHH-hCcCCChhHHHHHHHHHH
Confidence 489999999 9999977653 356678999999986 5677866 899999999999999999
Q ss_pred HHHHHhhcChHHHHHHhcccccCCh---------H------------------------HHHHHHHHHHhhCCCeeeCCc
Q psy9396 764 YTAYLKTHYSSFFMAANLSLSMDDT---------N------------------------KIKILVKDAIKTCGLSILPPN 810 (1149)
Q Consensus 764 ~~AylK~~yP~~f~~a~l~~~~~~~---------~------------------------k~~~~~~e~~~~~gi~ilppd 810 (1149)
|+||||+|||+|||||+||+..+++ + ++..++.||++ +||+|+|||
T Consensus 1277 ~~Ay~K~hyP~~Fyaa~ls~~~~~~d~~~~~~g~~~i~~~~~~i~~~~~~~~~ke~~~~~~~~~~~E~~~-rGi~~lp~d 1355 (1437)
T PRK00448 1277 RIAYFKVHYPLAYYAAYFSVRADDFDLETMSKGKEAIKAKMKEIKSKGNDASNKEKDLLTVLEIALEMLE-RGFKFQKVD 1355 (1437)
T ss_pred HHHHHHhccHHHHHHHHhccCccccchHhhhccHHHHHHHHHHHhhhccccchhhhhhhhHHHHHHHHHH-CCCeEeCCc
Confidence 9999999999999999999977542 2 26778999999 999999999
Q ss_pred ccccCC-CceeeeecCCCCCeEEecccccCCccHHHHHHHHHHHhcCCCCCHHHHHhhcccCCCCHHHHHHHHHcCCCCC
Q psy9396 811 INLSKY-YFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889 (1149)
Q Consensus 811 in~S~~-~f~~~~~~~~~~~~I~~gl~~Ikgvg~~~~~~i~~~r~~g~f~~~~df~~r~~~~~~~~~~le~Li~~Gafd~ 889 (1149)
||+|.+ .|.++ +++||+||++|||||+.+|++|+++|++|||+|++||++| ..+|++++|.|+++||||+
T Consensus 1356 in~S~~~~f~i~------~~~i~~pl~~I~glG~~~a~~Iv~~R~~g~F~s~~Df~~R---~~v~k~~ie~L~~~Ga~d~ 1426 (1437)
T PRK00448 1356 LYKSDATEFIIE------GDSLIPPFNALPGLGENVAKSIVEAREEGEFLSKEDLRKR---TKVSKTLIEKLDELGVLDD 1426 (1437)
T ss_pred ccccCCcceEee------CCEEEecchhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHH---hCCCHHHHHHHHHCCCCcC
Confidence 999998 79886 4789999999999999999999999999999999999999 5799999999999999999
Q ss_pred cchh
Q psy9396 890 FNEK 893 (1149)
Q Consensus 890 ~~~~ 893 (1149)
|+.+
T Consensus 1427 l~~~ 1430 (1437)
T PRK00448 1427 LPET 1430 (1437)
T ss_pred CCcc
Confidence 9854
No 14
>PF07733 DNA_pol3_alpha: Bacterial DNA polymerase III alpha subunit; InterPro: IPR011708 This is a conserved region found in the the DNA polymerase III alpha subunit, (2.7.7.7 from EC). DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The alpha chain is the DNA polymerase.; GO: 0008408 3'-5' exonuclease activity, 0006260 DNA replication, 0005737 cytoplasm; PDB: 3F2C_A 3F2B_A 3F2D_A 2HPM_A 2HPI_A 3E0D_A 2HQA_A 2HNH_A.
Probab=100.00 E-value=4.2e-136 Score=1190.62 Aligned_cols=423 Identities=51% Similarity=0.887 Sum_probs=369.0
Q ss_pred HHHHHHHHHHHHHHHhhhCCChhhhhhhhHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCCcccCCCcchhHHH
Q psy9396 292 DFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSL 371 (1149)
Q Consensus 292 ~~l~~l~~~gl~~r~~~~~~~~~~~~~~~~~~~~Rl~~EL~vI~~~gf~~YFLiv~D~v~~ak~~gi~vGpGRGSaagSl 371 (1149)
+||+++|++|+++||... ..++|++||+|||+||+++||++|||||||+|+|||++||+||||||||||||
T Consensus 1 ~~l~~~~~~g~~~r~~~~---------~~~~~~~Rl~~El~~i~~~~~~~yfLi~~d~v~~a~~~~i~~g~GRGS~~gSl 71 (426)
T PF07733_consen 1 EYLRKLCYEGLKKRYGDK---------IPEEYQERLEYELEVIKKLGFADYFLIVWDLVNWARKNGILVGPGRGSAAGSL 71 (426)
T ss_dssp -HHHHHHHHHHHHHHSSS-----------HCHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHTT--BES-EGGGGG-H
T ss_pred ChHHHHHHHHHHHHcCCC---------CCHHHHHHHHHHHHHHHhCCCcHhHhHHHHHHHHHHhcCCccccCCCchHHHH
Confidence 589999999999999532 13569999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCccCCCCCCCcceeccCCCCCCCCCceeecCCCchHhHHHHHHHHhCcccEEEEEecccchhhhHHHHHHHhc
Q psy9396 372 VAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVL 451 (1149)
Q Consensus 372 VaY~LgIT~vDPl~~~LlFERFLnpeR~smPDIDiDf~~~~R~~vi~yv~~kYG~~~Va~I~Tf~t~~ak~airdv~r~l 451 (1149)
||||||||+||||+|||+|||||||+|++|||||||||+++|++|++|+++|||+++||+|+||+|+++|+|+|||||+|
T Consensus 72 v~y~lgIT~vdPl~~~L~FERFlnp~R~~~PDIDiDf~~~~R~~vi~y~~~kyG~~~va~i~T~~t~~~k~Airdv~r~l 151 (426)
T PF07733_consen 72 VAYLLGITEVDPLKYDLLFERFLNPERVSMPDIDIDFSDERREEVIDYLKEKYGEDRVAQIGTFGTFKAKSAIRDVARAL 151 (426)
T ss_dssp HHHHTTSSSS-TTTTT--CHHHSTTTS-S---EEEEEETTTHHHHHHHHHHHH-TTCEEEEEEEEE--HHHHHHHHHHHT
T ss_pred HHHHhcCcccCCcccccchheecCccCcCCCCceeeeCcccHHHHHHHHHHHhCccCEEEEeecccccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHccCCCCCCCCcchHHHhhhChHHHHHhhccHHHHHHHHHHHHcccccCCccccccEEEEcCCCCCcccc
Q psy9396 452 DLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCP 531 (1149)
Q Consensus 452 g~~~~~~~~i~k~ip~~~~~~~~l~~a~~~~~~l~~~~~~~~~~~~l~~~a~~leGl~r~~~~HaaGvvIs~~~l~~~~P 531 (1149)
|+|+.++|+++|+||.. .+|++++++++++++++..++.+++++++|.+|||+|||+|+||||||||++||++++|
T Consensus 152 g~~~~~~~~i~k~i~~~----~~l~~~~~~~~~~~~~~~~~~~~~~l~~~A~~leG~~r~~g~HAaGvVIs~~pl~~~~P 227 (426)
T PF07733_consen 152 GIPEEEIDKISKLIPDD----ISLDDALEENPELRKFIDEDPKYPELFELAKKLEGLPRQTGVHAAGVVISDDPLTDYVP 227 (426)
T ss_dssp T--HHHHHHHHTTS-CC------CCCCCCCTTCCCCHHHH-HHHHHHHHHHHHHTT-EEEEEEECCEEEE-SS-GGGTS-
T ss_pred CcCHHHHHHHHHhCCCC----CCHHHHhhhCHHHHHhhhhchHHHHHHHHHHHhcCCCccCCcCCCEEEEcCCccCcccc
Confidence 99999999999999986 67999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeCCCCceEeeccccchhhcCCcceeccCCCcHHHHHHHHHHHHhhcCCCCCcCCCCCCCCCHHHHHHHhcCCcCccc
Q psy9396 532 LYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVF 611 (1149)
Q Consensus 532 l~~~~~~~~~~tq~d~~~~e~~GLlK~D~LGl~~Ltii~~~~~~i~~~~~~~~~id~~~ip~dD~~t~~ll~~g~T~GvF 611 (1149)
|+..++++.++|||||+++|++||||||||||+|||+|++++++|+++++ .++|+++||+||++||+||++|+|.|||
T Consensus 228 l~~~~~~~~~vtq~d~~~lE~~GLlK~D~LGl~~L~iI~~~~~~i~~~~~--~~id~~~I~~~D~~t~~l~~~g~T~GiF 305 (426)
T PF07733_consen 228 LQKSSNGGIPVTQFDMDDLEDLGLLKFDFLGLRTLTIIRDALELIKENYG--IDIDLDNIPLDDPKTYELISKGDTLGIF 305 (426)
T ss_dssp EEEGTTSSSEEESSEHHHHHTTTBEEEEEEEEHHHHHHHHHHHHHHHCCC--C---GGG--ST-HHHHHHHHTTS-TTST
T ss_pred eEECCCCCeeEecCChHHHHHCCCcccccccCChHHHHHHHHHHHhhccC--ccccHHHcCCchHHHHHHHhCCCCceec
Confidence 99988766899999999999999999999999999999999999999874 8899999999999999999999999999
Q ss_pred cCCCHhHHHHHHhcCCCCHHHHHHHHhccCCCccc--chHHHHHhhcC-CCCCCCCcchhhccccccCeehhHHHHHHHH
Q psy9396 612 QLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIA 688 (1149)
Q Consensus 612 Q~ES~gm~~~l~~~~P~~f~dl~a~~aL~RPGp~~--~i~~yi~rk~g-~~v~y~~p~l~~iL~~TyGvivYQEQvM~ia 688 (1149)
||||+||+++|++++|++|+||++++|||||||++ ++++|++||+| ++++|+||.|++||++||||||||||||||+
T Consensus 306 Q~ES~~~~~~l~~~kP~~f~dLv~~~aL~RPGp~~~g~~~~yi~rk~~~e~~~y~hp~l~~iL~~T~GvivYQEQIM~i~ 385 (426)
T PF07733_consen 306 QFESPGMRKLLKRLKPDSFEDLVAIVALYRPGPMDSGMIDEYIKRKNGREPIEYPHPELEEILKETYGVIVYQEQIMQIA 385 (426)
T ss_dssp TTTSHHHHHHHHHH---SHHHHHHHHHHTSCTCCCCTHHHHHHHHCTTSS---SCTSCCHHHHGGGTTS--CHHHHHHHH
T ss_pred ccCCHHHHHHHHhcCCCCHHHHHHHHhcccccccccccHHHHHHhcCCCCCCCCCCHHHHHHHHHhcCCCccHHHHHHHH
Confidence 99999999999999999999999999999999999 99999999999 9999999999999999999999999999999
Q ss_pred HHHcCCCchhhhHHHHHhCCCChHHHHHHHHHHHHHHHHcC
Q psy9396 689 QILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYG 729 (1149)
Q Consensus 689 ~~~agfs~~eAD~lRram~KK~~~~m~~~~~~F~~ga~~~g 729 (1149)
+.+||||++|||.||||||||+.++|++++++|++||++||
T Consensus 386 ~~~aGfs~~eAD~lRrai~KK~~~~~~~~~e~Fi~ga~~ng 426 (426)
T PF07733_consen 386 QILAGFSLGEADNLRRAISKKKPEEMEELKEKFIEGAVKNG 426 (426)
T ss_dssp HHHCT--HHHHHHHHHHHHCT-CCCHHHHHHHHHHHHHHCT
T ss_pred HHHcCCCHHHHHHHHHHHhcCCHhHHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999998
No 15
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=100.00 E-value=4e-117 Score=1060.61 Aligned_cols=774 Identities=25% Similarity=0.355 Sum_probs=674.2
Q ss_pred ccccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhCCCeeEeeeeeeecccc--------
Q psy9396 4 QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI-------- 75 (1149)
Q Consensus 4 ~fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~GIKpIiG~Ei~v~~~~-------- 75 (1149)
..|.||.||.+|=+||..++++||++|+++|++||||||||++...+++|++++++|||+|.|||+++.++.
T Consensus 335 KRVELh~HTkMS~mDai~sv~~~vk~A~kwghkaIAITDh~~VqafP~~y~~akK~giK~IyG~EanlvdD~vpiv~N~~ 414 (1444)
T COG2176 335 KRVELHFHTKMSQMDAITSVEELVKQAKKWGHKAIAITDHGVVQAFPEAYKAAKKYGIKAIYGLEANLVDDGVPIVYNPD 414 (1444)
T ss_pred ceEEEEeccchhhhcccCCHHHHHHHHHHcCCceEEEecCcchhhchHHHHhhhhcCceEEEeeeeeeccCCCceecCcc
Confidence 579999999999999999999999999999999999999999999999999999999999999999987642
Q ss_pred --------------------------------------------------------------------------------
Q psy9396 76 -------------------------------------------------------------------------------- 75 (1149)
Q Consensus 76 -------------------------------------------------------------------------------- 75 (1149)
T Consensus 415 d~~l~datyVVfDiETTGLs~~~d~iIE~aAvKikng~iId~f~~Fi~P~~pl~~~~telTgITdeml~~a~~i~~vL~k 494 (1444)
T COG2176 415 DQKLDDATYVVFDIETTGLSPVYDEIIEIAAVKIKNGRIIDKFQFFIKPGRPLSATITELTGITDEMLENAPEIEEVLEK 494 (1444)
T ss_pred ccccccccEEEEEeecCCcCcccchhhhheeeeeeCCcchHHHHHhcCCCCcCchhhhhccccCHHHHcCCccHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy9396 76 -------------------------------------------------------------------------------- 75 (1149)
Q Consensus 76 -------------------------------------------------------------------------------- 75 (1149)
T Consensus 495 f~~~~~d~IlVAHNasFD~gFl~~~~~k~~~~~~~~pvIDTL~lar~L~P~~ksh~Lg~l~kk~~v~le~hHRA~yDaea 574 (1444)
T COG2176 495 FREFIGDSILVAHNASFDMGFLNTNYEKYGLEPLTNPVIDTLELARALNPEFKSHRLGTLCKKLGVELERHHRADYDAEA 574 (1444)
T ss_pred HHHHhcCcEEEeccCccchhHHHHHHHHhCCccccCchhhHHHHHHHhChhhhhcchHHHHHHhCccHHHhhhhhhhHHH
Confidence
Q ss_pred ---------------------------------cCCCCccEEEEEcccHHHHHHHHHHHHHHHhhccCCcccccHHHHhc
Q psy9396 76 ---------------------------------ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122 (1149)
Q Consensus 76 ---------------------------------~~~~~~hlllLAkN~~Gy~nL~kL~S~~~~~~~~~~~p~i~~e~L~~ 122 (1149)
....+.|.++||||+.|++||++|+|.+++..|+. .|||+...|.+
T Consensus 575 t~~vf~~f~~~~ke~Gi~~l~eln~~l~~~~~ykr~r~~h~~i~vknq~GlKnLykLvS~s~~kyf~~-~PrI~~S~L~~ 653 (1444)
T COG2176 575 TAKVFFVFLKDLKEKGITNLSELNDKLSSEDLYKRLRPKHATIYVKNQVGLKNLYKLVSISHTKYFYG-RPRIPRSVLKK 653 (1444)
T ss_pred HHHHHHHHHHHHHHhchhhHHHHhHhhhhhHHHhhccccceEEEEechHhHHHHHHHHHHHHHHhhcc-CCCCcHHHHHH
Confidence 01256799999999999999999999999987764 89999999999
Q ss_pred cccCCCeEEEeCCCcchHHHHHhcCChHHHHHHHHHHHHhCCCCeEEEEccCCC----------c---chHHHHHHHHHH
Q psy9396 123 NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQ----------P---NMNFQIQQFINI 189 (1149)
Q Consensus 123 ~~~~~glIiis~~~~g~i~~~l~~~~~~~a~~~~~~~~~~f~~~~ylEi~~~~~----------~---~~~~~n~~l~~l 189 (1149)
+++||++.|+|..|++..+++....+++++.++.|. |+||++.+. . .-+..++.++++
T Consensus 654 --~regLligsac~~Gelf~a~l~k~~ee~e~iak~YD-------fIei~pp~~y~~li~~e~~~~~e~l~~~~k~li~~ 724 (1444)
T COG2176 654 --NREGLLIGSACSEGELFDAALQKPDEEVEEIAKFYD-------FIEIQPPANYAHLIEREGLKDKEALKEIIKKLIKL 724 (1444)
T ss_pred --hhcCeeeccCccchHHHHHHHhCCHHHHHHHHHhcC-------eEEecCchhhhhHHHhcccCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888774 888887542 1 125678899999
Q ss_pred HHhcCCCEEEecCccccCccCchHHHHHHHHHcC-CccccccccccCCcCCCCCCHHHHHHHhcChHH------HHHHHH
Q psy9396 190 ASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEG-EILSNTKRIKKFTKEQNFKTQSEMIKLFYDIPS------AIQNTI 262 (1149)
Q Consensus 190 A~~~~iplVatnDvhyl~~eD~~~~~vL~aI~~g-~~l~~~~~~~~~~~~~~~~s~~em~~~f~~~~~------a~~nt~ 262 (1149)
|+++|.|+|||+|+||++|+|...++++.|-+-+ ..++..-. ....++.||+|++||.+-|+.+.+ .++||+
T Consensus 725 g~~l~K~Vvatgn~hyl~p~d~iyr~ilv~s~G~~~~~~r~~~-~~~~P~~~frTT~EML~efsfLgee~a~eiVv~Ntn 803 (1444)
T COG2176 725 GKKLNKPVVATGNVHYLDPEDKIYRKILVASQGLGNPLNRTFN-EQTLPEVHFRTTDEMLQEFSFLGEEKAYEIVVENTN 803 (1444)
T ss_pred HHHhCCcEEEeCCceecChHHHHHHHhheecCCcCcccccccc-cccCCceeeecHHHHHHHHHhhhHHHHHHHhhcCcH
Confidence 9999999999999999999999999999985432 22221100 134578899999999999987643 589999
Q ss_pred HHHHhccccccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhCCChhhhhhhhHHHHHHHHHHHHHHHhcCCchh
Q psy9396 263 EIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGY 342 (1149)
Q Consensus 263 ~ia~~c~~~~~~~~~~lP~~~~p~~~~~~~~l~~l~~~gl~~r~~~~~~~~~~~~~~~~~~~~Rl~~EL~vI~~~gf~~Y 342 (1149)
+||++|+. + .|.-+++.+|.-..+++.+++++++-+.+.|++..| +.+.+||++||.-|...||+--
T Consensus 804 ~iad~ie~-i---~Pik~~LytPkie~a~e~v~~lty~~A~~iYG~pLP---------~IVe~RiEKEL~sII~nGFaVi 870 (1444)
T COG2176 804 KIADMIED-I---QPIKDKLYTPKIEGAEEKVRDLTYEKAHKIYGDPLP---------EIVEQRIEKELNSIIGNGFAVI 870 (1444)
T ss_pred HHHHHhhc-c---eecccCCCCCccCCHHHHHHHHHHHHHHHHhCCCch---------HHHHHHHHHHHHHHHcCCeeeh
Confidence 99999985 2 233345556666789999999999999999875443 5799999999999999999999
Q ss_pred hHHHHHHHHHHHhCCCcccCCCcchhHHHHHHHhcCCccCCCC-------------------------------------
Q psy9396 343 FLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLS------------------------------------- 385 (1149)
Q Consensus 343 FLiv~D~v~~ak~~gi~vGpGRGSaagSlVaY~LgIT~vDPl~------------------------------------- 385 (1149)
|||.+-+|+-+-+.|+.||| |||.++||||-++|||+||||.
T Consensus 871 YlISq~LVkkS~~dGYlVGS-RGSVGSSlVAtm~gITEVNPL~PHY~Cp~Cky~Ef~~d~svgsGfDLpdK~CPkCg~pl 949 (1444)
T COG2176 871 YLISQKLVKKSLDDGYLVGS-RGSVGSSLVATMIGITEVNPLPPHYLCPECKYSEFIDDGSVGSGFDLPDKDCPKCGTPL 949 (1444)
T ss_pred hHHHHHHHHhhccCCeEecC-CCcchHHHHHHhhcccccCCCCccccCCCCceeeeecCCCcCCCCCCCCCCCCcCCCcc
Confidence 99999999999999999998 9999999999999999999998
Q ss_pred ----CCCcceeccCCCCCCCCCceeecCCCchHhHHHHHHHHhCcccEEEEEecccchhhhHHHHHHHhcCCCHHHHHHH
Q psy9396 386 ----YNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSI 461 (1149)
Q Consensus 386 ----~~LlFERFLnpeR~smPDIDiDf~~~~R~~vi~yv~~kYG~~~Va~I~Tf~t~~ak~airdv~r~lg~~~~~~~~i 461 (1149)
||++||.||.......||||++|+.+++...++|+++.||+++|...+|.||++.|+|. +.+...
T Consensus 950 ~kDG~dIPFETFlGF~GDKVPDIDLNFSGeYQ~~AH~yvk~lFGe~~~fRAGTIgTvAEKTA~-----------GyVk~Y 1018 (1444)
T COG2176 950 KKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPKAHNYVKELFGEDYVFRAGTIGTVAEKTAY-----------GYVKKY 1018 (1444)
T ss_pred ccCCCCCChhhhcCCCCCCCCCccCcCCccccHHHHHHHHHHcCCcceeeccchhhHHHHHHH-----------HHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999994 444432
Q ss_pred HccCCCCCCCCcchHHHhhhChHHHHHhhccHHHHHHHHHHHHcccccCCccccccEEEEcCC--CCCccccceeeCC--
Q psy9396 462 SKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPS--KLINFCPLYKQEG-- 537 (1149)
Q Consensus 462 ~k~ip~~~~~~~~l~~a~~~~~~l~~~~~~~~~~~~l~~~a~~leGl~r~~~~HaaGvvIs~~--~l~~~~Pl~~~~~-- 537 (1149)
-. +.+ ..-.-.++-.+++.+.|+.|++|+||||+||.|. +++||+|++.+++
T Consensus 1019 ~e----d~~--------------------~~~r~aEidRl~~~~tGvKRTTGQHPGGIiIvP~~~dVydFtPvqfPAdD~ 1074 (1444)
T COG2176 1019 FE----DYN--------------------KFYRDAEIDRLVQGCTGVKRTTGQHPGGIIIVPKYMDVYDFTPVQFPADDT 1074 (1444)
T ss_pred HH----hcC--------------------cccchHHHHHHHHhccccccccCCCCCeEEEecCCcccccccCCCCCCCCC
Confidence 21 001 0112347888999999999999999999999997 6899999998654
Q ss_pred -CCceEeeccccchhhcCCcceeccCCCcHHHHHHHHHHHHhhcCCCCCcCCCCCCCCCHHHHHHHhcCC----------
Q psy9396 538 -MTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKAN---------- 606 (1149)
Q Consensus 538 -~~~~~tq~d~~~~e~~GLlK~D~LGl~~Ltii~~~~~~i~~~~~~~~~id~~~ip~dD~~t~~ll~~g~---------- 606 (1149)
++|.+|+||.+++.+ .|||+|+||++..|+|+...++ ..||+.+||+|||.|.++|++-+
T Consensus 1075 ~sewkTTHFdfh~ihd-nlLKLDILGHDDPT~ikmLqdl--------tgIdp~~IP~dD~~vm~iFss~~~Lgvtpe~i~ 1145 (1444)
T COG2176 1075 NSEWKTTHFDFHAIHD-NLLKLDILGHDDPTMIKMLQDL--------TGIDPKTIPMDDPEVMKIFSSTESLGVTPEQIG 1145 (1444)
T ss_pred CCcceeeeeehhhhcc-ceeeeeccCCCChHHHHHHHHh--------cCCCcccCCCCCHhHHHHhcCCccCCCCHHHhC
Confidence 469999999999987 8999999999999999976553 67999999999999999999865
Q ss_pred ----cCccccCCCHhHHHHHHhcCCCCHHHHHHHHhccCCCcccchHHHHHhhcCCCCCCCCc---------chhhcccc
Q psy9396 607 ----TVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYFNYPDP---------RTKDVLSE 673 (1149)
Q Consensus 607 ----T~GvFQ~ES~gm~~~l~~~~P~~f~dl~a~~aL~RPGp~~~i~~yi~rk~g~~v~y~~p---------~l~~iL~~ 673 (1149)
|.||..|....+|+||.+.+|++|.||+.+++| .||+.||..+. .|.+++.+
T Consensus 1146 ~~tGtlGIPEFGT~FVR~ML~eTkPktFaeLv~ISGL---------------SHGtdVWlgNAq~lIk~g~~~Ls~VI~C 1210 (1444)
T COG2176 1146 EKTGTLGIPEFGTRFVRQMLEETKPKTFAELVRISGL---------------SHGTDVWLGNAQDLIKSGIATLSDVIGC 1210 (1444)
T ss_pred CccccccCCccchHHHHHHHHhcCCCCHHHHHhhccC---------------cCCcccccccHHHHHHhCCcchhhheee
Confidence 667778888999999999999999999999999 68888887753 79999999
Q ss_pred ccCeehhHHHHHHHHHHHcCCCchhh----hHHHHHhCCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccC
Q psy9396 674 TYGIMVYQEQVMQIAQILGGYSLGQA----DLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYG 749 (1149)
Q Consensus 674 TyGvivYQEQvM~ia~~~agfs~~eA----D~lRram~KK~~~~m~~~~~~F~~ga~~~g~~~~~a~~i~~~i~~fa~Yg 749 (1149)
+..||||-- -.|..+.-| ..+||.++.|..+..+. +.++|+++ |..++|.| ..|.
T Consensus 1211 RDDIMvYLI--------~kGlep~~AFkIME~VRKGk~lk~~e~~~~--------Mke~~Vp~----WyIeSC~K-IkYM 1269 (1444)
T COG2176 1211 RDDIMVYLI--------HKGLEPSLAFKIMEFVRKGKGLKPAEYEEL--------MKENKVPE----WYIESCLK-IKYM 1269 (1444)
T ss_pred hHHHHHHHH--------HcCCCcchHHHHHHHHhccCCCChHHHHHH--------HHHcCCcH----HHHHHhhh-hhhh
Confidence 999999964 256665554 78999877765233333 45788887 46788988 6999
Q ss_pred CChhhHHHHHHHHHHHHHHhhcChHHHHHHhcccccCChH----------------------------------HHHHHH
Q psy9396 750 FNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTN----------------------------------KIKILV 795 (1149)
Q Consensus 750 FnksHa~aYa~~ay~~AylK~~yP~~f~~a~l~~~~~~~~----------------------------------k~~~~~ 795 (1149)
|+|+||+||.++||+.||+|+|||.+||||++|...+++| .+..++
T Consensus 1270 FPKAHAaAYVlMA~RIAyFKVhhPl~YYAayfSira~~FDi~~m~~Gke~ik~k~~Ei~~~~~~~~~~kEk~l~t~lEi~ 1349 (1444)
T COG2176 1270 FPKAHAAAYVLMAWRIAYFKVHHPLEYYAAYFSIRADDFDIETMSKGKEAIKAKMEEINKRKGNKASPKEKNLLTVLEIV 1349 (1444)
T ss_pred CchHHHHHHHHHHHHHHHHHhcchHHHHHHHheeehhhcCHHHHhccHHHHHHHHHHHhhcccccCChhhhhhHhHHHHH
Confidence 9999999999999999999999999999999998765433 134568
Q ss_pred HHHHhhCCCeeeCCcccccCC-CceeeeecCCCCCeEEecccccCCccHHHHHHHHHHHhcCCCCCHHHHHhhcccCCCC
Q psy9396 796 KDAIKTCGLSILPPNINLSKY-YFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYIN 874 (1149)
Q Consensus 796 ~e~~~~~gi~ilppdin~S~~-~f~~~~~~~~~~~~I~~gl~~Ikgvg~~~~~~i~~~r~~g~f~~~~df~~r~~~~~~~ 874 (1149)
.|+.. +|+++.|+|+-+|++ .|.++ +++++.||.+|+|+|+.+|+.|+++|+.|||.|.+||.+| ++++
T Consensus 1350 ~EM~a-RGf~f~~idly~S~At~Fvid------~~~LipPFi~i~GlGe~vA~~IV~AR~Ek~FlS~eDlkkR---tkis 1419 (1444)
T COG2176 1350 LEMLA-RGFKFQKIDLYKSDATEFVID------GDTLIPPFIAIPGLGENVAKSIVEAREEKEFLSKEDLKKR---TKIS 1419 (1444)
T ss_pred HHHHH-ccCcccCceeeeccCeEEEEe------CCeecCceeccCChhHHHHHHHHHHhhcCCcCCHHHHHHh---cCcc
Confidence 89999 999999999999998 78887 5789999999999999999999999999999999999999 7899
Q ss_pred HHHHHHHHHcCCCCCcch
Q psy9396 875 RRIINSLINSGAFDCFNE 892 (1149)
Q Consensus 875 ~~~le~Li~~Gafd~~~~ 892 (1149)
++.+|.|-..|+|+.|..
T Consensus 1420 ~t~ie~~~~~G~l~~lpe 1437 (1444)
T COG2176 1420 KTHIEKLDEMGCLEGLPE 1437 (1444)
T ss_pred HHHHHHHHhcCcccCCCc
Confidence 999999999999999974
No 16
>PRK07373 DNA polymerase III subunit alpha; Reviewed
Probab=100.00 E-value=1.3e-82 Score=744.94 Aligned_cols=380 Identities=29% Similarity=0.410 Sum_probs=340.6
Q ss_pred hcccCCChhhHHHHHHHHHHHHHHhhcChHHHHHHhcccccCChHHHHHHHHHHHhhCCCeeeCCcccccCCCceeeeec
Q psy9396 745 FAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIES 824 (1149)
Q Consensus 745 fa~YgFnksHa~aYa~~ay~~AylK~~yP~~f~~a~l~~~~~~~~k~~~~~~e~~~~~gi~ilppdin~S~~~f~~~~~~ 824 (1149)
||+||||||||+|||++||||||||||||+|||||+||+++++++|+..|++||++ |||+|+|||||+|++.|+++
T Consensus 33 ~A~YGFNKSHSaAYA~iaYqtAYLKahYP~EFmaAlLs~~~~~~~Ki~~yi~Ear~-~GI~VlpPdIN~S~~~Ftv~--- 108 (449)
T PRK07373 33 IASNCFNKSHSTAYAYVTYQTAYLKANYPVEYMAALLTANSGNQDKVQKYRENCQK-MGIEVEPPDINRSGKDFTPV--- 108 (449)
T ss_pred eEecCCcHHHHHHHHHHHHHHHHHhhccHHHHHHHHhhcCCCCchHHHHHHHHHHH-cCCeEeCCceeccCCccEEE---
Confidence 89999999999999999999999999999999999999999999999999999999 99999999999999999997
Q ss_pred CCCCCeEEecccccCCccHHHHHHHHHHHh-cCCCCCHHHHHhhcccCCCCHHHHHHHHHcCCCCCcchhHHHHHHHHHH
Q psy9396 825 DGKHKKIRYGLGAIKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDV 903 (1149)
Q Consensus 825 ~~~~~~I~~gl~~Ikgvg~~~~~~i~~~r~-~g~f~~~~df~~r~~~~~~~~~~le~Li~~Gafd~~~~~R~~ll~~l~~ 903 (1149)
+++|||||++|||||+.++++|+++|+ +|||+|++|||.|++.+.+||++||+||+|||||+||.||++|+++++.
T Consensus 109 ---~~~IrfGL~aIKGVG~~~i~~Iv~eR~~~g~F~sl~DF~~Rvd~~~vnkr~lE~LIkaGAFD~~g~~R~~ll~~ld~ 185 (449)
T PRK07373 109 ---GEKILFGLSAVRNLGEGAIESILKAREEGGEFKSLADFCDRVDLRVVNRRALETLIYCGAFDKIEPNRQQLINDLEL 185 (449)
T ss_pred ---CCEEEEcchhcCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHhCcccCCHHHHHHHHHcCcccccchhHHHHHHHHHH
Confidence 468999999999999999999999998 7999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCC-CC--Cc-c--c----cc--ccccCCCCCCChHHHHHHHHHHhCccccccchHHHHHHHh
Q psy9396 904 ALKNAEKTKKFINQLSLFKN-DD--NN-N--L----KE--YLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIR 971 (1149)
Q Consensus 904 ~~~~~~~~~~~~~~~~q~~L-~~--~~-~--~----~~--~~~~~~~~~~~~~e~l~~EkE~LG~yls~HPl~~~~~~l~ 971 (1149)
+++++.+.+++ +.+||.+| +. .. . . .. .+.+++.++|+..|+|.+|||+||||+|+|||+.|+..++
T Consensus 186 ~l~~~~~~~~~-~~~gQ~sLF~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~e~L~~EkE~LGfylS~HPl~~~~~~l~ 264 (449)
T PRK07373 186 VIDWAQKRAKE-KASGQGNLFDLLGGNTSNSSAANNAFEQAPSAPPVADFSLQEKLKLEKELLGFYVSEHPLKSIRRPAR 264 (449)
T ss_pred HHHHHHHHHHH-HhcCCccccccccccccccccccccccccccCCCCCCCChHHHHHHHHHHhccccCcCchHHHHHHHH
Confidence 99999887777 77788887 31 11 0 0 11 1235778999999999999999999999999999999999
Q ss_pred hcccccccccCC---CCceEEEEEEEeeeEeeecCC-cEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEE
Q psy9396 972 QFIPIYLSELKP---TYSCTVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVL 1047 (1149)
Q Consensus 972 ~~~~~~i~~l~~---~~~v~v~G~I~~vk~~~TK~G-~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~ 1047 (1149)
.+...+++++.. +..++++|+|+++|+++||+| +|||+++||.||.+|++|||++|+++++.++++.+|+|+|+|+
T Consensus 265 ~~~~~~~~~l~~~~~~~~v~vaG~I~~ik~~~TKkG~~maf~~leD~tG~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~ 344 (449)
T PRK07373 265 LLSPINLSELEEQKEKTKVSAVVMLNEVKKIVTKKGDPMAFLQLEDLSGQSEAVVFPKSYERISELLQVDARLIIWGKVD 344 (449)
T ss_pred HcCCcCHHHHhcccCCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCCEEEEECHHHHHHHHHHhccCCEEEEEEEEE
Confidence 887777887752 337999999999999999999 8999999999999999999999999999999999999999998
Q ss_pred eeccCCceEEEEccccccHHHHHhcCcEEEEEec-C---c-chHHHHHHHHHhcCCC---CCccEEEEEEecCceeEEEE
Q psy9396 1048 EDRFLKNIRINAEKIFDINVARILYGKKFSVMFN-R---T-FNISILKKILLRFKCK---NGLPFVLYYCINKSIKYEMK 1119 (1149)
Q Consensus 1048 ~~~~~~~~~ii~~~i~~l~~~~~~~~~~l~i~l~-~---~-~~l~~l~~il~~~~G~---G~~~V~l~~~~~~~~~~~~~ 1119 (1149)
.+ ++.++++++++.+++++ ..++|+++ . . ..+++|+++|.+|+|. |.+||++++. .+...+.+.
T Consensus 345 ~~--~~~~~liv~~i~~l~~~-----~~l~i~~~~~~~~~~~~l~~L~~~l~~~~G~~~~~~~~v~l~~~-~~~~~~~~~ 416 (449)
T PRK07373 345 RR--DDQVQLIVEDAEPIEEV-----RMVMVELSPQQAGNIVSQHRLKEILQEQAGDKNKAKVPVIAIIQ-SGGNRQLVR 416 (449)
T ss_pred ec--CCeEEEEEeEeecHhhC-----cEEEEEEccccccCHHHHHHHHHHHHhCCCCCCCCceEEEEEEe-cCCceEEEE
Confidence 64 36789999999999764 45888886 2 1 4578999999999981 1399999998 653346889
Q ss_pred cCCcceecCcHHHHHHHHhcC
Q psy9396 1120 FPLNYKVQPIDDLKLALINLG 1140 (1149)
Q Consensus 1120 l~~~~~v~~~~~l~~~L~~~G 1140 (1149)
++..|+|+++++++++|+..|
T Consensus 417 l~~~~~v~~~~~l~~~L~~~~ 437 (449)
T PRK07373 417 LGQQYWVQDEHSAVQALQNAG 437 (449)
T ss_pred cCCCcccCCCHHHHHHHHHCC
Confidence 999999999999999998733
No 17
>PF14579 HHH_6: Helix-hairpin-helix motif; PDB: 2HPM_A 2HPI_A 3E0D_A 3F2C_A 3F2B_A 3F2D_A 2HQA_A 2HNH_A.
Probab=99.88 E-value=4.3e-23 Score=192.53 Aligned_cols=89 Identities=46% Similarity=0.719 Sum_probs=71.7
Q ss_pred CCeeeCCcccccCCCceeeeecCCCCCeEEecccccCCccHHHHHHHHHHHhcCCCCCHHHHHhhcccCCCCHHHHHHHH
Q psy9396 803 GLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLI 882 (1149)
Q Consensus 803 gi~ilppdin~S~~~f~~~~~~~~~~~~I~~gl~~Ikgvg~~~~~~i~~~r~~g~f~~~~df~~r~~~~~~~~~~le~Li 882 (1149)
||+|+|||||+|.+.|+++. ++++||+||++|||||+.++++|+++|++|||+|++||+.|++ .+|++++|.||
T Consensus 1 Gi~v~ppdIn~S~~~~~~~~----~~~~Ir~gl~~Ikglg~~~a~~I~~~R~~g~f~s~~df~~R~~--~i~~~~le~Li 74 (90)
T PF14579_consen 1 GIKVLPPDINKSDADFTVED----KNNAIRLGLSAIKGLGEEVAEKIVEERENGPFKSLEDFIQRLP--KINKRQLEALI 74 (90)
T ss_dssp T-EEE---TTT-BSS-EEET----T-TEEE-BGGGSTTS-HHHHHHHHHHHHCSS-SSHHHHHHHS---TS-HHHHHHHH
T ss_pred CCEEeCCeecccCCCeEEEC----CCCEEeehHhhcCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHh--cCCHHHHHHHH
Confidence 89999999999999999982 2379999999999999999999999999999999999999986 89999999999
Q ss_pred HcCCCCCcch-hHHHH
Q psy9396 883 NSGAFDCFNE-KRYML 897 (1149)
Q Consensus 883 ~~Gafd~~~~-~R~~l 897 (1149)
++||||+|+. +|++|
T Consensus 75 ~aGafd~~~~~~R~~l 90 (90)
T PF14579_consen 75 KAGAFDSFGKSRRQAL 90 (90)
T ss_dssp HTTTTTTCSSCHHHHH
T ss_pred HCCCccccChhhhhhC
Confidence 9999999999 46554
No 18
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=99.84 E-value=1.1e-20 Score=196.71 Aligned_cols=172 Identities=28% Similarity=0.406 Sum_probs=145.4
Q ss_pred ccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhCCCeeEeeeeeeecccccCCCCccEEE
Q psy9396 6 IHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIENKKPSRLLL 85 (1149)
Q Consensus 6 v~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~GIKpIiG~Ei~v~~~~~~~~~~hlll 85 (1149)
||||+||.||+.||..++++++++|++.|++++|||||++++|+.++++.|++.||++++|+|+.... ....+++++
T Consensus 1 iDlH~HT~~s~~dg~~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E~~~~~---~~~~~~~~i 77 (175)
T PF02811_consen 1 IDLHVHTKYSILDGKDSPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVEIESFE---RNDPFDYII 77 (175)
T ss_dssp EEEEB--TTTSSTSSSSHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEEESHHH---HTTTEEEEE
T ss_pred CCccccccCcchhhcCCHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHhcCCceEEeEeecccc---ccchhHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999995332 134689999
Q ss_pred EEcccHHHHHHHHHHHHHHHhhccCCcccccHHHHhcccc-CCCeEEEeCCCcchHHHHHhcCChHHHHHHHHHHHHhCC
Q psy9396 86 LVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKY-QDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFP 164 (1149)
Q Consensus 86 LAkN~~Gy~nL~kL~S~~~~~~~~~~~p~i~~e~L~~~~~-~~glIiis~~~~g~i~~~l~~~~~~~a~~~~~~~~~~f~ 164 (1149)
++.+..||++|+++.+..+..++.+. +.++.+.+.. + ..|++++++++.+........+..+.+++.+..+.+.+.
T Consensus 78 ~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~l~~--~~~~~~~~i~ah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (175)
T PF02811_consen 78 GSVHEVGYKNLCEDFSKSYTKKYFYR-PQIPLELLEE--YKDSGLLIILAHPDGYKFTGIEQKEYEEVEKIIDAFLEAIK 154 (175)
T ss_dssp EEGSHCSHHHHHHHHHHHHHHTCTTS-BCECHHHHHH--HHHTTEEEEECSTTGTCTTCHHCTHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHhccccC-cchHHHHHHH--HHHCCCEEEEeCCCchHHHHHhcCCHHHHHHHHHHHHHHhC
Confidence 99999999999999999988666555 8888888887 6 789999999988877655555556778888888877776
Q ss_pred -CCeEEEEccCCCcchHHHH
Q psy9396 165 -DNFYIEIQRFKQPNMNFQI 183 (1149)
Q Consensus 165 -~~~ylEi~~~~~~~~~~~n 183 (1149)
.++++|++.++.....++|
T Consensus 155 ~~~~~~ein~~~~~k~~~~~ 174 (175)
T PF02811_consen 155 KKGFALEINTSGLRKHKEVN 174 (175)
T ss_dssp HTTEEEEEEHSCCTCHHHHH
T ss_pred cCCEEEEEECCCCCCCCCCC
Confidence 8899999999876654444
No 19
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=99.62 E-value=6.4e-16 Score=136.29 Aligned_cols=65 Identities=46% Similarity=0.749 Sum_probs=63.6
Q ss_pred cccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhCCCeeEeeeeeee
Q psy9396 7 HLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWI 71 (1149)
Q Consensus 7 ~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~GIKpIiG~Ei~v 71 (1149)
|||+||.||.+||..++++++++|++.|++++|||||++++|.++|++.+++.||+||+|+|+++
T Consensus 1 dlH~Ht~~S~~~~~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~~~ 65 (67)
T smart00481 1 DLHVHSDYSLLDGALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEANI 65 (67)
T ss_pred CCccccCCccccccCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEEEe
Confidence 69999999999999999999999999999999999999999999999999999999999999986
No 20
>PRK06361 hypothetical protein; Provisional
Probab=99.31 E-value=2.9e-11 Score=131.04 Aligned_cols=176 Identities=18% Similarity=0.133 Sum_probs=109.3
Q ss_pred ccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchhhHHHHH---HH----H-HhCCCeeEeeeeeeecccccCC---
Q psy9396 10 LHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFY---KS----A-YNKGIKPIIGCDVWITNEIENK--- 78 (1149)
Q Consensus 10 vHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~---~~----a-k~~GIKpIiG~Ei~v~~~~~~~--- 78 (1149)
+||.|| ||..++++++++|++.|++++|||||+...+...++ .. + ++.||+++.|+|+...++....
T Consensus 1 ~Ht~~s--dg~~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~GiE~~~~~~~~~~~~~ 78 (212)
T PRK06361 1 THTIFS--DGELIPSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEELELYWDIEVIPGVELTHVPPKLIPKLA 78 (212)
T ss_pred CCcccc--CCCCCHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEEEcccCchhhchHH
Confidence 699999 999999999999999999999999999765433222 11 2 2359999999999854431110
Q ss_pred ---CCccEEEEEcccHHHHHHHHHHHHHHHhhccCCcccccHHHHhccccCCC-eEEEeCCCcchHHHHHhcCChHHHHH
Q psy9396 79 ---KPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDG-LIALSGAHLGDIGIAVQNGRNDIAEN 154 (1149)
Q Consensus 79 ---~~~hlllLAkN~~Gy~nL~kL~S~~~~~~~~~~~p~i~~e~L~~~~~~~g-lIiis~~~~g~i~~~l~~~~~~~a~~ 154 (1149)
..+.+.+..-... .+. .+......+.. ...+ +-++.|+- .+. .+.+
T Consensus 79 ~~~~~~~~~~~svH~~---------------~~~--~~~~~~~~~~a--~~~~~~dvlaHpd--~~~-------~~~~-- 128 (212)
T PRK06361 79 KKARDLGAEIVVVHGE---------------TIV--EPVEEGTNLAA--IECEDVDILAHPG--LIT-------EEEA-- 128 (212)
T ss_pred HHHHHCCCEEEEECCC---------------Ccc--hhhhhhhHHHH--HhCCCCcEecCcc--hhh-------HHHH--
Confidence 0111222211100 000 00000001111 1123 44555542 111 1111
Q ss_pred HHHHHHHhCCCCeEEEEccCCCcchHHHHHHHHHHHHhcCCCEEEecCccccCccCchHHHHHHHHHcCCcc
Q psy9396 155 FARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEIL 226 (1149)
Q Consensus 155 ~~~~~~~~f~~~~ylEi~~~~~~~~~~~n~~l~~lA~~~~iplVatnDvhyl~~eD~~~~~vL~aI~~g~~l 226 (1149)
...-..++|+|++... .....+..++++++++|+|+++++|+| .++|...++.+.+|..+..+
T Consensus 129 -----~~~~~~~~~lEin~~~--~~~~~~~~~l~~a~~~gi~vv~~SDaH--~~~d~~~~~~~~~i~~~~gl 191 (212)
T PRK06361 129 -----ELAAENGVFLEITARK--GHSLTNGHVARIAREAGAPLVINTDTH--APSDLITYEFARKVALGAGL 191 (212)
T ss_pred -----HHHHHcCeEEEEECCC--CcccchHHHHHHHHHhCCcEEEECCCC--CHHHHHHHHHHHHHHcCCCC
Confidence 1111357999999632 234567789999999999999999999 88999999999999866544
No 21
>PRK09248 putative hydrolase; Validated
Probab=99.23 E-value=8.7e-11 Score=130.25 Aligned_cols=178 Identities=11% Similarity=0.028 Sum_probs=105.8
Q ss_pred CCCccccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCc-hhhHHHHH-----HHH--HhCCCeeEeeeeeeec
Q psy9396 1 MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSN-LFGIIKFY-----KSA--YNKGIKPIIGCDVWIT 72 (1149)
Q Consensus 1 m~~~fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~n-l~G~~~f~-----~~a--k~~GIKpIiG~Ei~v~ 72 (1149)
|. +++|+|+||.|| .||..++++++++|++.|++++|||||.. +.+.++++ +.. +..+|++++|+|+.+.
T Consensus 1 m~-~~~D~H~HT~~s-~~~~~~~~e~v~~A~~~G~~~i~iTdH~~~~~~~~~~~~~~~~~~~~~~~~~i~il~GiE~~~~ 78 (246)
T PRK09248 1 MK-YPVDTHTHTIAS-GHAYSTLHENAAEAKQKGLKLFAITDHGPDMPGAPHYWHFGNLRVLPRKVDGVGILRGIEANIK 78 (246)
T ss_pred Cc-cceEeCcCCCCC-CCCCCCHHHHHHHHHHCCCCEEEECCCCCCcCCCCCHHHHHHHHHHHHhhcCCeEEEEEEeccc
Confidence 44 578999999999 68999999999999999999999999984 44432222 111 3469999999999765
Q ss_pred cccc-C------CCCccEEEEEcccHHHHHHHHHHHHHHHhhccCCcccccHHHHhccccCCCeEEEeCCCcchHHHHHh
Q psy9396 73 NEIE-N------KKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQ 145 (1149)
Q Consensus 73 ~~~~-~------~~~~hlllLAkN~~Gy~nL~kL~S~~~~~~~~~~~p~i~~e~L~~~~~~~glIiis~~~~g~i~~~l~ 145 (1149)
+..+ . ...++++++.--..++... ....+.+ .-...+ + +.++.++.|+.....
T Consensus 79 ~~~~~~~~~~~~~~~~D~vi~svH~~~~~~~---~~~~~~~--------~~i~~l-~---~g~~~vLAHP~~~~~----- 138 (246)
T PRK09248 79 NYDGEIDLPGDMLKKLDIVIAGFHEPVFAPG---DKETNTQ--------ALINAI-K---NGRVDIIGHPGNPKY----- 138 (246)
T ss_pred cCCCcccCCHhHhhhCCEEEEecccCccCCc---CHHHHHH--------HHHHHH-h---cCCCCEEECcCCCCC-----
Confidence 5211 0 1234556654321110000 0000000 001122 2 134555666543211
Q ss_pred cCChHHHHHHHHHHHHhCCCCeEEEEccCCCcc----hHHHHHHHHHHHHhcCCCEEEecCcccc
Q psy9396 146 NGRNDIAENFARRWSKIFPDNFYIEIQRFKQPN----MNFQIQQFINIASNINLPIVATHPIQFL 206 (1149)
Q Consensus 146 ~~~~~~a~~~~~~~~~~f~~~~ylEi~~~~~~~----~~~~n~~l~~lA~~~~iplVatnDvhyl 206 (1149)
....+ +.+..+. ..+..+|++..+... ...-+..+++++.++|+|++.++|+|..
T Consensus 139 ~~~~~---~~~~~~~---~~g~~lEvN~~~l~~~~~g~~~~~~~~~~~~~~~g~~~~~gSDAH~~ 197 (246)
T PRK09248 139 PIDIE---AVVKAAK---EHNVALEINNSSFGHSRKGSEDNCRAIAALCKKAGVWVALGSDAHIA 197 (246)
T ss_pred cccHH---HHHHHHH---HhCCEEEEECCCCccCCCCCcChHHHHHHHHHHcCCeEEEeCCCCCh
Confidence 11122 2222222 235699999865411 1224678899999999999999999954
No 22
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis.
Probab=99.21 E-value=5.3e-11 Score=107.94 Aligned_cols=75 Identities=23% Similarity=0.193 Sum_probs=68.7
Q ss_pred eEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeeccCCceEEEEccccc
Q psy9396 987 CTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064 (1149)
Q Consensus 987 v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~~~i~~ 1064 (1149)
++++|+|++++. ||+| |+|++|+|.+|++++++||+.|++++..|++|..|+|.|+++.+.++++++++++++.+
T Consensus 2 ~~v~g~v~~i~~--tk~g-~~~~~L~D~~~~i~~~~f~~~~~~~~~~l~~g~~v~v~g~v~~~~~~~~~~l~v~~i~~ 76 (78)
T cd04489 2 VWVEGEISNLKR--PSSG-HLYFTLKDEDASIRCVMWRSNARRLGFPLEEGMEVLVRGKVSFYEPRGGYQLIVEEIEP 76 (78)
T ss_pred EEEEEEEecCEE--CCCc-EEEEEEEeCCeEEEEEEEcchhhhCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEE
Confidence 579999999998 8999 99999999999999999999999999999999999999999976445789999988754
No 23
>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit. PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain.
Probab=99.15 E-value=1.7e-10 Score=105.11 Aligned_cols=70 Identities=24% Similarity=0.477 Sum_probs=63.1
Q ss_pred eEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchHHHH--HHHhhccCCcEEEEEEEEEeeccCCceEEEEcccc
Q psy9396 987 CTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYE--KNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063 (1149)
Q Consensus 987 v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~~y~--~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~~~i~ 1063 (1149)
+.++|+|++++ .||+|+. |++|||.+|++|+++||+.|+ ++++.+.+|++++|+|+++.+ ++ ++++++|.
T Consensus 2 v~i~GiI~~v~--~TK~g~~-~~~leD~~G~~Ev~~F~~~~~~~~~~~~l~~d~~v~v~g~v~~~---~~-~l~~~~I~ 73 (79)
T cd04490 2 VSIIGMVNDVR--STKNGHR-IVELEDTTGRITVLLTKDKEELFEEAEDILPDEVIGVSGTVSKD---GG-LIFADEIF 73 (79)
T ss_pred EEEEEEEeEEE--EcCCCCE-EEEEECCCCEEEEEEeCchhhhhhhhhhccCCCEEEEEEEEecC---CC-EEEEEEeE
Confidence 67999999999 8999955 999999999999999999999 999999999999999999652 23 88888764
No 24
>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]
Probab=99.07 E-value=2.3e-10 Score=127.29 Aligned_cols=175 Identities=20% Similarity=0.142 Sum_probs=107.6
Q ss_pred ccccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchhhHHHHH-HHHHhCCCeeEeeeeeeecccccCCCCcc
Q psy9396 4 QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFY-KSAYNKGIKPIIGCDVWITNEIENKKPSR 82 (1149)
Q Consensus 4 ~fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~-~~ak~~GIKpIiG~Ei~v~~~~~~~~~~h 82 (1149)
|.+||||||.+| ||..+|.+++++|++.|++.+|||||+++-|..++. .+....||++|.|+|+++... +...|
T Consensus 2 ~~~DLHvHSt~S--dg~~~p~~vv~~A~~~g~~vlAiTDHdt~~g~~~a~~~~~~~l~i~vipG~Ei~t~~~---~~~ih 76 (258)
T COG0613 2 MKADLHVHTTAS--DGGLTPREVVERAKAKGVDVLAITDHDTVRGLLEARRAAGLRLGITVIPGIEISTTWG---GHIIH 76 (258)
T ss_pred cceeeeEecccC--CCCCCHHHHHHHHHHcCCCEEEECCcccccccHHHHHHhhcCCCceeeccEEeecccC---CeEEE
Confidence 578999999999 999999999999999999999999999999999997 566678999999999998753 23345
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhhccCCcccccHHHHhccccCCCeEEEeCCCcchHHHHHhcCChHHHHHHHHHHHHh
Q psy9396 83 LLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKI 162 (1149)
Q Consensus 83 lllLAkN~~Gy~nL~kL~S~~~~~~~~~~~p~i~~e~L~~~~~~~glIiis~~~~g~i~~~l~~~~~~~a~~~~~~~~~~ 162 (1149)
++.+--+.+ ..++..+...... .+.-..+++.. ..+.+.+.++..+... ...+. ...+.. ..
T Consensus 77 ~~~~~~~~~-~~~~~~~~~~~~~------~~~~~~~~i~~---~~~~~~~~h~~~~~~~--~~~~~-~~~~~h----~~- 138 (258)
T COG0613 77 ILGLGIDIT-DEPLVEGLARQQL------YREERLEEIKE---RLGKAIIPHPFEGARK--LAGLG-AITRAH----IA- 138 (258)
T ss_pred EEeeccccc-chhhhhhhhhccc------cHHHHHHHHHH---hCCccccCcchHHHHh--cCCcc-cchhhh----hh-
Confidence 544432211 1122222222111 01112233443 2344444554433211 11111 000110 01
Q ss_pred CCCCeEEEEccCCCcchHHHHHHHHHHHHhcCCCEEEecCccc
Q psy9396 163 FPDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQF 205 (1149)
Q Consensus 163 f~~~~ylEi~~~~~~~~~~~n~~l~~lA~~~~iplVatnDvhy 205 (1149)
.+-+|.-+.. ..+...|..+.+.+..++.|..++.|.|.
T Consensus 139 ---~~~ve~~~~~-~~~~~fn~~~~~~~~~~~~~~~~~~~~~i 177 (258)
T COG0613 139 ---RDAVEVGNAS-TRQGVFNKYLKRGAPKYVPPEWADSEAHV 177 (258)
T ss_pred ---hhhhcccccc-chHHHHHHHHhccCcccCcccccCHHHHH
Confidence 1122322211 12346788889999999999999999884
No 25
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=99.06 E-value=2.5e-09 Score=117.79 Aligned_cols=197 Identities=15% Similarity=0.111 Sum_probs=119.3
Q ss_pred cccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchh----hH---HH----HHHHHHhCCCeeEeeeeeeecc
Q psy9396 5 FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLF----GI---IK----FYKSAYNKGIKPIIGCDVWITN 73 (1149)
Q Consensus 5 fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~----G~---~~----f~~~ak~~GIKpIiG~Ei~v~~ 73 (1149)
..++|+||.|| ||..++.|++++|.++|++.+|||||.-.. .. .. +....+..+|++++|+|+.+.+
T Consensus 2 ~~D~H~HT~~s--dg~~~~~e~~~~A~~~g~~~~~iTdH~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~G~E~~~~~ 79 (237)
T COG1387 2 KIDLHTHTVFS--DGEATPEEMVEAAIELGLEYIAITDHAPFLRVGLDAELLKYFIEEIRELKKEYDIKILIGIEVDILP 79 (237)
T ss_pred CcccccCcccc--cCCCCHHHHHHHHHHcCCeEEEEeccccccccCCCHHHHHHHHHHHHHHHHhcCceEEEeEEEEecC
Confidence 46899999999 999999999999999999999999998651 11 12 2223345689999999999877
Q ss_pred cccC------CCCccEEEEEcccHHHHHHHHHHHHHHHhhccCCcccccHHHHhccccCCCeEEEeCCCcchHHH-HHhc
Q psy9396 74 EIEN------KKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGI-AVQN 146 (1149)
Q Consensus 74 ~~~~------~~~~hlllLAkN~~Gy~nL~kL~S~~~~~~~~~~~p~i~~e~L~~~~~~~glIiis~~~~g~i~~-~l~~ 146 (1149)
.... .....+++.....-+ + +....+......... ...+-+-+.+++.+.... ....
T Consensus 80 ~~~~d~~~~~~~~lD~vi~svH~~~--------~------~~~~~~~~~~~~~~a--~~~~~v~il~H~~~~~~~~~~~~ 143 (237)
T COG1387 80 DGSLDFLDEILKELDYVIASVHELN--------F------EDQDEEDYTERLIAA--MSNGAVDILAHPGGRLLGRIDRG 143 (237)
T ss_pred CCCcccchhhHhhcCEEEEEeccCC--------c------cccCHHHHHHHHHHH--HcCCCccEEecCCcccccccccc
Confidence 5311 122445554433211 0 000001111111111 222333333334442111 1111
Q ss_pred CChHHHHHHHHHHHHhCCCCeEEEEccCCCcchHHHHHHHHHHHHhcCCCEEEecCccccCccCchHHHHHHHHHcCC
Q psy9396 147 GRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGE 224 (1149)
Q Consensus 147 ~~~~~a~~~~~~~~~~f~~~~ylEi~~~~~~~~~~~n~~l~~lA~~~~iplVatnDvhyl~~eD~~~~~vL~aI~~g~ 224 (1149)
.....+.+.+. +.+ ..+..+||+.. +.....+..++.++++.|++++.++|+|....-....+.+..+.+.+.
T Consensus 144 ~~~~~~~~~~~-~~~--~~g~aleins~--~~~~~~~~~~~~~~~e~G~~~~i~tDaH~~~~lg~~~~~~~~~~~a~~ 216 (237)
T COG1387 144 AYKEDIEELIE-LAE--KNGKALEINSR--PGRLDPNSEILRLARELGVKLAIGTDAHRPGDLGDMYFGVKIARRAGL 216 (237)
T ss_pred ccHHHHHHHHH-HHH--HhCcEEeecCC--cCccCchHHHHHHHHHhCCeEEeecCcCChhhcccchHHHHHHHHhcC
Confidence 12222222222 222 24679999875 445566788999999999999999999998877777777777766544
No 26
>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=99.05 E-value=1.7e-09 Score=98.48 Aligned_cols=79 Identities=35% Similarity=0.630 Sum_probs=72.5
Q ss_pred EEEEEEeeeEeeecCC-cEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeeccCCceEEEEccccccHH
Q psy9396 989 VSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINV 1067 (1149)
Q Consensus 989 v~G~I~~vk~~~TK~G-~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~~~i~~l~~ 1067 (1149)
++|+|++++.+.||+| +|++++++|.+|.+++++|++.|+++...+++|..+.|.|+++.. ++..+++++++.++++
T Consensus 2 i~g~v~~~~~~~~k~g~~~~~~~l~D~tg~~~~~~f~~~~~~~~~~l~~g~~v~v~G~v~~~--~~~~~l~~~~i~~~~~ 79 (84)
T cd04485 2 VAGLVTSVRRRRTKKGKRMAFVTLEDLTGSIEVVVFPETYEKYRDLLKEDALLLVEGKVERR--DGGLRLIAERIEDLED 79 (84)
T ss_pred EEEEEEEeEEEEcCCCCEEEEEEEEeCCCeEEEEECHHHHHHHHHHhcCCCEEEEEEEEEec--CCceEEEeeccccHHH
Confidence 7899999999999999 799999999999999999999999999999999999999999863 4679999999999876
Q ss_pred HH
Q psy9396 1068 AR 1069 (1149)
Q Consensus 1068 ~~ 1069 (1149)
+.
T Consensus 80 ~~ 81 (84)
T cd04485 80 AR 81 (84)
T ss_pred Hh
Confidence 54
No 27
>PRK07328 histidinol-phosphatase; Provisional
Probab=99.04 E-value=1.6e-09 Score=121.85 Aligned_cols=192 Identities=7% Similarity=0.053 Sum_probs=103.7
Q ss_pred ccccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchh-----------h-----HHHH---HHHHHh--CCCe
Q psy9396 4 QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLF-----------G-----IIKF---YKSAYN--KGIK 62 (1149)
Q Consensus 4 ~fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~-----------G-----~~~f---~~~ak~--~GIK 62 (1149)
|.+++|+||.|| .||..+++++|++|.+.|++.+|||||...+ + ...+ .+.+++ .+|+
T Consensus 2 m~~D~H~HT~~s-~~~~~~~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y~~i~ 80 (269)
T PRK07328 2 MLVDYHMHTPLC-GHAVGTPEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARFPDLY 80 (269)
T ss_pred CceeeccCCCCC-CCCCCCHHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHcCCCe
Confidence 468999999999 6999999999999999999999999997651 0 1222 222332 3799
Q ss_pred eEeeeeeeeccccc-------CCCCccEEEEEccc-HH--H--HHHHHH----HHHHHHhhccCCcccccHHHHhccccC
Q psy9396 63 PIIGCDVWITNEIE-------NKKPSRLLLLVKNN-NG--Y--LQLCEL----LSKAYIENINYGRAEIRIEWLEKNKYQ 126 (1149)
Q Consensus 63 pIiG~Ei~v~~~~~-------~~~~~hlllLAkN~-~G--y--~nL~kL----~S~~~~~~~~~~~p~i~~e~L~~~~~~ 126 (1149)
+++|+|+...++.. ....+.+++..--. .| + .+..+- ......+.++. ......+ +
T Consensus 81 Il~GiE~~~~~~~~~~~~~~l~~~~~D~vigSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-----~~~~~~~---~ 152 (269)
T PRK07328 81 VRLGIEADYHPGTEEFLERLLEAYPFDYVIGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFA-----LVEQAAR---S 152 (269)
T ss_pred EEEEEEecccCCcHHHHHHHHHhCCCCeEEEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHH-----HHHHHHH---c
Confidence 99999998765421 11234555544321 11 0 000000 00000000000 0111111 1
Q ss_pred CCeEEEeCCCcchHHHHHhcCChHHHHHHHHHHHHhC-CCCeEEEEccCCCcc---hHHHHHHHHHHHHhcCCCEEEecC
Q psy9396 127 DGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIF-PDNFYIEIQRFKQPN---MNFQIQQFINIASNINLPIVATHP 202 (1149)
Q Consensus 127 ~glIiis~~~~g~i~~~l~~~~~~~a~~~~~~~~~~f-~~~~ylEi~~~~~~~---~~~~n~~l~~lA~~~~iplVatnD 202 (1149)
...-++.|+- -+ ..............+.+..+.. ..+..+|||..++.. +.--+..++++++++|+|++.++|
T Consensus 153 ~~~dvlgH~d--~i-~~~~~~~~~~~~~~~~~il~~~~~~g~~lEiNt~~~r~~~~~~yp~~~il~~~~~~g~~itigSD 229 (269)
T PRK07328 153 GLFDIIGHPD--LI-KKFGHRPREDLTELYEEALDVIAAAGLALEVNTAGLRKPVGEIYPSPALLRACRERGIPVVLGSD 229 (269)
T ss_pred CCCCEeeCcc--HH-HHcCCCCchhHHHHHHHHHHHHHHcCCEEEEEchhhcCCCCCCCCCHHHHHHHHHcCCCEEEeCC
Confidence 2333444431 11 1110001111111112211222 367899999865321 122245789999999999999999
Q ss_pred ccccC
Q psy9396 203 IQFLK 207 (1149)
Q Consensus 203 vhyl~ 207 (1149)
+|...
T Consensus 230 AH~~~ 234 (269)
T PRK07328 230 AHRPE 234 (269)
T ss_pred CCCHH
Confidence 99654
No 28
>PRK08392 hypothetical protein; Provisional
Probab=99.02 E-value=4.1e-09 Score=114.56 Aligned_cols=170 Identities=15% Similarity=0.125 Sum_probs=98.5
Q ss_pred ccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchh------hHH-HHHHHHHhCCCeeEeeeeeeecccccC-
Q psy9396 6 IHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLF------GII-KFYKSAYNKGIKPIIGCDVWITNEIEN- 77 (1149)
Q Consensus 6 v~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~------G~~-~f~~~ak~~GIKpIiG~Ei~v~~~~~~- 77 (1149)
+|+|+||.|| ||..++++++++|.+.|++.+|||||..+. ... +..+..++.+|+++.|+|+.+.++...
T Consensus 1 ~D~H~HT~~s--d~~~~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~~~~~i~il~GiE~~~~~~~~~~ 78 (215)
T PRK08392 1 MDLHTHTVYS--DGIGSVRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWGEESEIVVLAGIEANITPNGVDI 78 (215)
T ss_pred CccccCCCCc--CCcCCHHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHhhccCceEEEeEEeeecCCcchh
Confidence 4799999999 899999999999999999999999998542 111 222333446899999999987654211
Q ss_pred ----CCCccEEEEEccc----HHHHHHHHHHHHHHHhhccCCcccccHHHHhccccCCC-eEEEeCCCcchHHHHHhcCC
Q psy9396 78 ----KKPSRLLLLVKNN----NGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDG-LIALSGAHLGDIGIAVQNGR 148 (1149)
Q Consensus 78 ----~~~~hlllLAkN~----~Gy~nL~kL~S~~~~~~~~~~~p~i~~e~L~~~~~~~g-lIiis~~~~g~i~~~l~~~~ 148 (1149)
...+++++..--. ..|+ .+ .+.+.+. ...+ .-++.| +.... +......
T Consensus 79 ~~~~~~~~D~vI~SvH~~~~~~~~~--------~Y------------~~~~~~~-~~~~~~dvlgH-~d~~~-~~~~~~~ 135 (215)
T PRK08392 79 TDDFAKKLDYVIASVHEWFGRPEHH--------EY------------IELVKLA-LMDENVDIIGH-FGNSF-PYIGYPS 135 (215)
T ss_pred HHHHHhhCCEEEEEeecCcCCcHHH--------HH------------HHHHHHH-HhcCCCCEEeC-CCccc-cCCCCch
Confidence 0234555543221 1110 00 1111110 1112 223333 22110 0000011
Q ss_pred hHHHHHHHHHHHHhCCCCeEEEEccCCCcchHHHHHHHHHHHHhcCCCEEEecCccccC
Q psy9396 149 NDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLK 207 (1149)
Q Consensus 149 ~~~a~~~~~~~~~~f~~~~ylEi~~~~~~~~~~~n~~l~~lA~~~~iplVatnDvhyl~ 207 (1149)
.+...+.+.... ..+..+|||.... .-+..++++++++|+|++.++|+|...
T Consensus 136 ~~~~~~i~~~~~---~~g~~lEiNt~~~----~p~~~~l~~~~~~G~~~~igSDAH~~~ 187 (215)
T PRK08392 136 EEELKEILDLAE---AYGKAFEISSRYR----VPDLEFIRECIKRGIKLTFASDAHRPE 187 (215)
T ss_pred HHHHHHHHHHHH---HhCCEEEEeCCCC----CCCHHHHHHHHHcCCEEEEeCCCCChH
Confidence 223333332222 2568999996321 123467899999999999999999653
No 29
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=98.94 E-value=5e-09 Score=115.59 Aligned_cols=164 Identities=18% Similarity=0.157 Sum_probs=95.6
Q ss_pred CccccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhCCCeeEeeeeeeeccccc------
Q psy9396 3 PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIE------ 76 (1149)
Q Consensus 3 ~~fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~GIKpIiG~Ei~v~~~~~------ 76 (1149)
||++|||+||. + ||..++++++++|+++|++.+|||||..++....-+... -.||+++.|+|+...+...
T Consensus 1 ~m~~DlHvHt~-~--d~~~~~~e~i~~A~~~Gl~~i~itdH~~~~~~~~~~~~~-~~~i~Il~GiEi~~~~~~~~~~~~~ 76 (237)
T PRK00912 1 MKFYDLNVHAV-P--DGYDTVLRLISEASHLGYSGIALSNHSDKYPESKPELED-LLGFEIFRGVEIVASNPSKLRGLVG 76 (237)
T ss_pred CCceEeccCCC-C--CCcchHHHHHHHHHHCCCCEEEEecCcccccchhHHHHH-hcCCcEEeeEEEecCCHHHHHHHHH
Confidence 35899999993 4 899999999999999999999999998765332111111 1289999999996433210
Q ss_pred -CCCCccEEEEEcccHHHHHHHHHHHHHHHhhccCCcccccHHHHhccccCCCeEEEeCCCcchHHHHHhcCChHHHHHH
Q psy9396 77 -NKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENF 155 (1149)
Q Consensus 77 -~~~~~hlllLAkN~~Gy~nL~kL~S~~~~~~~~~~~p~i~~e~L~~~~~~~glIiis~~~~g~i~~~l~~~~~~~a~~~ 155 (1149)
..+.+.++. +.. |... +.. ...+ +.++-+++++...... .+-.+...+.
T Consensus 77 ~~~~~~d~v~-v~~--~~~~-------------------~~~-~a~~---~~~vdIi~hp~~~~~~----~~~~~~~~~~ 126 (237)
T PRK00912 77 KFRKKVDVLA-VHG--GDEK-------------------VNR-AACE---NPRVDILSHPYTKRKD----SGINHVLAKE 126 (237)
T ss_pred hccCcccEEE-EeC--CCHH-------------------HHH-HHHc---cCCCcEEeCccccCCC----CCcCHHHHHH
Confidence 011233332 210 0000 000 1111 2345556655321100 0111111111
Q ss_pred HHHHHHhCCCCeEEEEccCCCcc----h---HHHH-HHHHHHHHhcCCCEEEecCcccc
Q psy9396 156 ARRWSKIFPDNFYIEIQRFKQPN----M---NFQI-QQFINIASNINLPIVATHPIQFL 206 (1149)
Q Consensus 156 ~~~~~~~f~~~~ylEi~~~~~~~----~---~~~n-~~l~~lA~~~~iplVatnDvhyl 206 (1149)
+. ..+..+||+....-. . ...| ..++++++++|+|++.++|+|..
T Consensus 127 a~------~~gv~lEIn~s~~~~~~~~~r~~~~~~~~~~~~~~~~~g~piiisSdAh~~ 179 (237)
T PRK00912 127 AA------RNNVAIEFNLRDILKSRGGRRARTLSNFRDNLALARKYDFPLVLTSGAMSC 179 (237)
T ss_pred HH------HCCeEEEEEchHhhhhcccHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcc
Confidence 11 257899999864311 1 1223 57899999999999999999954
No 30
>PRK07945 hypothetical protein; Provisional
Probab=98.90 E-value=1.1e-08 Score=118.18 Aligned_cols=178 Identities=16% Similarity=0.106 Sum_probs=99.8
Q ss_pred cccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchh----h-----HHHH---HHHHHh--CCCeeEeeeeee
Q psy9396 5 FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLF----G-----IIKF---YKSAYN--KGIKPIIGCDVW 70 (1149)
Q Consensus 5 fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~----G-----~~~f---~~~ak~--~GIKpIiG~Ei~ 70 (1149)
..|+|+||.|| ||..+++++|++|.+.|++.+|||||.... | .... .+.+++ .+|+++.|+|+.
T Consensus 97 ~~D~H~HT~~S--dg~~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~~I~Il~GiE~d 174 (335)
T PRK07945 97 RGDLHTHSDWS--DGGSPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELAPFRILTGIEVD 174 (335)
T ss_pred hhhcccccCCC--CCCCCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCCceEEEEeEec
Confidence 57999999999 999999999999999999999999997542 1 1111 112222 379999999998
Q ss_pred ecccccCC------CCccEEEEEcccHHHHHHHHHHHHHHHhhccCCcccccHHHHhccccCCCeEEEeCCCcchHHHHH
Q psy9396 71 ITNEIENK------KPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAV 144 (1149)
Q Consensus 71 v~~~~~~~------~~~hlllLAkN~~Gy~nL~kL~S~~~~~~~~~~~p~i~~e~L~~~~~~~glIiis~~~~g~i~~~l 144 (1149)
+.++...+ ..+.+++..--.. ....+.. ....++.. ...+.+-+.+++.......-
T Consensus 175 ~~~~g~~~~~~~~l~~~D~vIgSvH~~-----~~~~~~~-----------~~~~l~~a--i~~~~~dvlgH~D~~~~~~~ 236 (335)
T PRK07945 175 ILDDGSLDQEPELLDRLDVVVASVHSK-----LRMDAAA-----------MTRRMLAA--VANPHTDVLGHCTGRLVTGN 236 (335)
T ss_pred ccCCCCcchhHHHHHhCCEEEEEeecC-----CCCCHHH-----------HHHHHHHH--hcCCCCeEEecCchhhhccc
Confidence 76522110 1234554332110 0000000 01111221 11222322333322110000
Q ss_pred hcC----ChHHHHHHHHHHHHhCCCCeEEEEccCCCcchHHHHHHHHHHHHhcCCCEEEecCccccCc
Q psy9396 145 QNG----RNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKK 208 (1149)
Q Consensus 145 ~~~----~~~~a~~~~~~~~~~f~~~~ylEi~~~~~~~~~~~n~~l~~lA~~~~iplVatnDvhyl~~ 208 (1149)
... .++ ..+.+.. .-..+.-+|||..+.. ..-+..++++|+++|+|++.++|+|....
T Consensus 237 ~~~~~~~~~~-~~~i~~a---~~e~g~~lEINt~~~r--~~P~~~il~~a~e~G~~vtigSDAH~p~~ 298 (335)
T PRK07945 237 RGTRPESKFD-AEAVFAA---CREHGTAVEINSRPER--RDPPTRLLRLALDAGCLFSIDTDAHAPGQ 298 (335)
T ss_pred cCCCChhhcC-HHHHHHH---HHHhCCEEEEeCCCCC--CCChHHHHHHHHHcCCeEEecCCCCChhh
Confidence 000 010 1122211 1135689999986542 22456789999999999999999997543
No 31
>TIGR00375 conserved hypothetical protein TIGR00375. The member of this family from Methanococcus jannaschii, MJ0043, is considerably longer and appears to contain an intein N-terminal to the region of homology.
Probab=98.89 E-value=1.4e-07 Score=109.30 Aligned_cols=317 Identities=17% Similarity=0.105 Sum_probs=175.7
Q ss_pred cccccccccCchh-hccccHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHH----HhCCCe------eEeeeeeeecc
Q psy9396 5 FIHLRLHSEYSII-DGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSA----YNKGIK------PIIGCDVWITN 73 (1149)
Q Consensus 5 fv~LHvHS~ySll-dg~~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~a----k~~GIK------pIiG~Ei~v~~ 73 (1149)
|+|||+||.||-- +..++++.|+.+|+..|++-||+|||+.- ...+.... .+.||. ++.|+|+...
T Consensus 1 ~aDLHIHs~~S~a~~~~m~~~~i~~~a~~KGldvIg~~D~~~p--~~~~~~~~~~~~~~~Gl~~~~ei~~~~~~ei~~~- 77 (374)
T TIGR00375 1 NADLHIHIGRTRGAKTLTLDRILVEQSRLKGLELLGIIDCHSP--LEEGISSGKRELDGGGIRYRSELSIYDEACVDES- 77 (374)
T ss_pred CCccceecCcCCCCCccCCHHHHHHHHHhcCCEEEEEecCCCc--hHHHHhhcccccCCCCeeeccceeeccccccccC-
Confidence 5799999999964 34566788899999999999999999877 35555444 456776 7777776433
Q ss_pred cccCCCCccEEEEEcccHHHHHHHHHHHHHHHhhccCCcccc---cHHH-HhccccCCCeEEEeCCCcchHHHHHhcCCh
Q psy9396 74 EIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEI---RIEW-LEKNKYQDGLIALSGAHLGDIGIAVQNGRN 149 (1149)
Q Consensus 74 ~~~~~~~~hlllLAkN~~Gy~nL~kL~S~~~~~~~~~~~p~i---~~e~-L~~~~~~~glIiis~~~~g~i~~~l~~~~~ 149 (1149)
...|+++|..+-+--..+.+.+.. ++... +.|.. +..+ +....-.+|+++-.|.. -.....+.+ .
T Consensus 78 -----~~VH~L~~fp~l~~a~~f~~~l~~-~l~~~--~rp~q~~~~~~~~~~~v~~~gGi~iPAHif-tP~~Sl~g~--~ 146 (374)
T TIGR00375 78 -----GPIHVLLFMPTLADMKQFSNWLSA-RLKNI--GRSSQRIYETGLNLEKVQDYGGLFGPAHIF-TPWTSLYKS--G 146 (374)
T ss_pred -----CCceEEEECCCHHHHHHHHHHHHh-hCCCC--CCCCeeeecHHHHHHHhhcCCeEEEeCCCC-CCccccccc--c
Confidence 257999999887766666665553 33322 12322 2222 11110124555555433 222222222 1
Q ss_pred HHHHHHHHHHHHhCC-CCeEEEEccCCCcchHHHHHHHHHHHHhcCCCEEEecCccccC------------ccCch---H
Q psy9396 150 DIAENFARRWSKIFP-DNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLK------------KTEFL---A 213 (1149)
Q Consensus 150 ~~a~~~~~~~~~~f~-~~~ylEi~~~~~~~~~~~n~~l~~lA~~~~iplVatnDvhyl~------------~eD~~---~ 213 (1149)
+.. .+.++ ....+|+-.... .. .+..++.-.+.|+|.++|+|++. .++.. .
T Consensus 147 ~~~-------~~~~g~~p~avElglS~d---~~---ma~~~s~L~~~~~ISnSDAHsl~p~~IGre~n~~~~~~~sf~~~ 213 (374)
T TIGR00375 147 DSS-------SDCYVFDPDFVELGLSAD---TD---MADHISELNDYPFLTNSDAHSLGPHRLGREFNQLEVQSADFTEF 213 (374)
T ss_pred cch-------hhhhcCCCceEEEeccCC---HH---HHHHhHHhcCCCeEeecCCCCCChhHhCCceEEEecCCCCHHHH
Confidence 111 11222 126899976543 22 33467778999999999999987 23333 7
Q ss_pred HHHHHHHHcCCcccccc----ccccC---CcCCC-CCCHHHHHHHhcChH-------HHHHHHHHHHHhccccccccCCC
Q psy9396 214 HEVRTCIAEGEILSNTK----RIKKF---TKEQN-FKTQSEMIKLFYDIP-------SAIQNTIEIAKRCNLKLEFGKPK 278 (1149)
Q Consensus 214 ~~vL~aI~~g~~l~~~~----~~~~~---~~~~~-~~s~~em~~~f~~~~-------~a~~nt~~ia~~c~~~~~~~~~~ 278 (1149)
..++.+|+.+....... ..++. ...++ ..+++|-.+.=..+| -.+....+|||+ . +.....
T Consensus 214 ~~~l~ai~~~~i~~~~g~~P~~GKYh~~~c~~C~~~~~~~~~~~~~~~CpCG~~i~~GV~~Rv~eLad~-~---~~~p~~ 289 (374)
T TIGR00375 214 ALALKAIDDRKIIANYGLDPLLGKYHQTACEACGEPAVSEDAETACANCPCGGRIKKGVSDRLRELSDQ-K---LEHPVP 289 (374)
T ss_pred HHHHHHhhCCceEeeeeECcCCCccchhhhcccCCcCCchhhhhcCCCCCCCCcceechHHHHHHHhcC-C---CCCCCC
Confidence 78888888776543321 11110 01111 123444332211122 135667777775 3 111111
Q ss_pred CCCCC--CCCCCCHHHHHHHHHHHHHHHHHhhhCCChhhhhhhhHHHHHHHHHHHHHHHhcCCchhh---HHHHHHHHHH
Q psy9396 279 LPKFP--TPKNININDFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYF---LIVSDFIQWA 353 (1149)
Q Consensus 279 lP~~~--~p~~~~~~~~l~~l~~~gl~~r~~~~~~~~~~~~~~~~~~~~Rl~~EL~vI~~~gf~~YF---Liv~D~v~~a 353 (1149)
-|.|. +| |..+.-.|+..= +....-....+.+.+++--|++|+.+.-.++-= =-++..|.-+
T Consensus 290 rppy~~~iP--------L~ei~~~~~~~~-----~~~k~v~~~~~~l~~~fG~E~~iL~~~~~eel~~~~~~~a~~I~~~ 356 (374)
T TIGR00375 290 RPPYVHLIP--------LAEVIGVGPKKG-----IFTKAVQSLWEKLKKAFGTEIAVLHEAAEEDLARVVPKVAALIVKF 356 (374)
T ss_pred CCCeeeeCC--------HHHHHhhhcCCC-----CccHHHHHHHHHHHHHhccHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 22221 11 122222232210 000000112345677788888888887776632 3456778888
Q ss_pred HhCCCcccCCCc
Q psy9396 354 KNNSIPVGPGRG 365 (1149)
Q Consensus 354 k~~gi~vGpGRG 365 (1149)
|+..+.+=||-|
T Consensus 357 R~G~v~~~~G~g 368 (374)
T TIGR00375 357 RSGKLELKPGGG 368 (374)
T ss_pred HCCCEEEEcCCC
Confidence 998888888766
No 32
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=98.75 E-value=5.8e-08 Score=108.21 Aligned_cols=67 Identities=16% Similarity=0.240 Sum_probs=52.1
Q ss_pred cccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCch---h------------hHHHH---HHHHH-h--CCCeeEe
Q psy9396 7 HLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNL---F------------GIIKF---YKSAY-N--KGIKPII 65 (1149)
Q Consensus 7 ~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl---~------------G~~~f---~~~ak-~--~GIKpIi 65 (1149)
++|+||.|| -||..+++++|++|++.|++.+|||||+.+ + ...++ .+.++ + .+|++++
T Consensus 2 D~H~Ht~~s-~d~~~~~ee~v~~A~~~Gl~~i~~TdH~p~~~~~~~~~~~~~~~~~~~~~Y~~~i~~l~~~y~~~i~I~~ 80 (253)
T TIGR01856 2 DGHSHSPFC-AHGTDTLEEVVQEAIQLGFEEICFTEHAPLPFEYPEETALDKMAFSSLPEYFKEINRLKKEYADKLKILI 80 (253)
T ss_pred CcccCcCCC-CCCCCCHHHHHHHHHHcCCCEEEecCCCCcccCCCccccccchhHHHHHHHHHHHHHHHHHhhCCCeEEE
Confidence 799999999 599999999999999999999999999763 1 01111 22222 2 3799999
Q ss_pred eeeeeeccc
Q psy9396 66 GCDVWITNE 74 (1149)
Q Consensus 66 G~Ei~v~~~ 74 (1149)
|+|+...++
T Consensus 81 GiE~~~~~~ 89 (253)
T TIGR01856 81 GLEVDYIPG 89 (253)
T ss_pred EEEeccccc
Confidence 999987653
No 33
>PRK08609 hypothetical protein; Provisional
Probab=98.72 E-value=5.4e-08 Score=119.91 Aligned_cols=176 Identities=16% Similarity=0.184 Sum_probs=103.0
Q ss_pred ccccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchh----h--HHHHH------HHHHh--CCCeeEeeeee
Q psy9396 4 QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLF----G--IIKFY------KSAYN--KGIKPIIGCDV 69 (1149)
Q Consensus 4 ~fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~----G--~~~f~------~~ak~--~GIKpIiG~Ei 69 (1149)
+..|+|+||.+| ||..++++++++|++.|++.+++|||.... | ..++. +..++ .||+++.|+|+
T Consensus 334 ~~~DlH~HT~~s--Dg~~sleemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~~i~Il~GiEv 411 (570)
T PRK08609 334 IQGDLHMHTTWS--DGAFSIEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYPEIDILSGIEM 411 (570)
T ss_pred hcCCccccCCCC--CCCCCHHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEE
Confidence 357999999999 999999999999999999999999997321 1 11111 22222 38999999999
Q ss_pred eecccccCC------CCccEEEEEcccHHHHHHHHHHHHHHHhhccCCcccccHHHHhccccCCCeEEEeCCCcchHHHH
Q psy9396 70 WITNEIENK------KPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIA 143 (1149)
Q Consensus 70 ~v~~~~~~~------~~~hlllLAkN~~Gy~nL~kL~S~~~~~~~~~~~p~i~~e~L~~~~~~~glIiis~~~~g~i~~~ 143 (1149)
.+.++...+ ..+.+++..-.. +|.. . ...+ .+.+.+. ...+.+-+.+++.+.+
T Consensus 412 ~i~~~g~~d~~~~~L~~~D~vI~SvH~-~~~~----~-----------~~~~-~~~l~~a-~~~~~~dILaHpd~rl--- 470 (570)
T PRK08609 412 DILPDGSLDYDDEVLAELDYVIAAIHS-SFSQ----S-----------EEEI-MKRLENA-CRNPYVRLIAHPTGRL--- 470 (570)
T ss_pred eecCCcchhhcHHHHHhhCEEEEEeec-CCCC----C-----------HHHH-HHHHHHH-hcCCCceEEECCCccc---
Confidence 987632110 124445443211 0000 0 0001 1112221 2234444444455422
Q ss_pred Hh-cCCh-HHHHHHHHHHHHhCCCCeEEEEccCCCcchHHHHHHHHHHHHhcCCCEEEecCccccC
Q psy9396 144 VQ-NGRN-DIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLK 207 (1149)
Q Consensus 144 l~-~~~~-~~a~~~~~~~~~~f~~~~ylEi~~~~~~~~~~~n~~l~~lA~~~~iplVatnDvhyl~ 207 (1149)
+. ...+ ....+.+.... ..+..+|||.++.. ...+..+++.+.++|++++.++|+|...
T Consensus 471 i~~~~~~~~d~~~i~~~a~---~~G~~lEINa~~~r--~~~~~~~~~~~~e~Gv~i~igSDAH~~~ 531 (570)
T PRK08609 471 IGRRDGYDVNIDQLIELAK---ETNTALELNANPNR--LDLSAEHLKKAQEAGVKLAINTDAHHTE 531 (570)
T ss_pred cccCCCchHHHHHHHHHHH---HhCCEEEEcCCccc--cCccHHHHHHHHHcCCEEEEECCCCChh
Confidence 11 1111 11222222112 24689999987542 2346788999999999999999999543
No 34
>PRK08123 histidinol-phosphatase; Reviewed
Probab=98.70 E-value=1.4e-07 Score=106.10 Aligned_cols=69 Identities=16% Similarity=0.099 Sum_probs=52.7
Q ss_pred ccccccccccCchhhcc-ccHHHHHHHHHHcCCCEEEEecCCchhh-----------------HHHHH---HHHH-h--C
Q psy9396 4 QFIHLRLHSEYSIIDGL-LRINDVIEAAANDYQPALAITDLSNLFG-----------------IIKFY---KSAY-N--K 59 (1149)
Q Consensus 4 ~fv~LHvHS~ySlldg~-~~ieeLV~~Ake~G~~AlAITDH~nl~G-----------------~~~f~---~~ak-~--~ 59 (1149)
|.+++|+||.|| -||. .+++++|++|.+.|++.+|||||..+.+ ...+. +.++ + .
T Consensus 2 m~~D~H~HT~~s-~h~~~~~~e~~v~~Ai~~Gl~~i~~tdH~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~i~~l~~ky~~ 80 (270)
T PRK08123 2 MKRDGHTHTPFC-PHGSKDDLEAYIERAIELGFTEITFTEHAPLPPGFIDPTPRQDSAMAIEQLERYLKELNELKKKYAG 80 (270)
T ss_pred CccccccCCCCC-CCCCCCCHHHHHHHHHHcCCcEEEEeccCCCccccCCcccCcccccCHHHHHHHHHHHHHHHHHccC
Confidence 468999999999 4764 6899999999999999999999976531 11222 2233 2 3
Q ss_pred CCeeEeeeeeeecc
Q psy9396 60 GIKPIIGCDVWITN 73 (1149)
Q Consensus 60 GIKpIiG~Ei~v~~ 73 (1149)
+|++..|+|+...+
T Consensus 81 ~i~i~~GiE~~~~~ 94 (270)
T PRK08123 81 QIDIRIGLEVDYIE 94 (270)
T ss_pred CCeEEEEEEeeccC
Confidence 69999999997655
No 35
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands. The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....
Probab=98.65 E-value=2.1e-07 Score=83.20 Aligned_cols=74 Identities=30% Similarity=0.472 Sum_probs=63.6
Q ss_pred eEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeeccCCc-eEEEEcccccc
Q psy9396 987 CTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKN-IRINAEKIFDI 1065 (1149)
Q Consensus 987 v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~~~~-~~ii~~~i~~l 1065 (1149)
|.+.|.|.+++ ..+++++|++|+|+||.+++++|++.+.++...+++|..|.|+|+++.. +++ +++.++++..|
T Consensus 1 V~v~G~V~~~~---~~~~~~~~~~l~D~tg~i~~~~~~~~~~~~~~~l~~g~~v~v~G~v~~~--~~~~~~l~~~~i~~l 75 (75)
T PF01336_consen 1 VTVEGRVTSIR---RSGGKIVFFTLEDGTGSIQVVFFNEEYERFREKLKEGDIVRVRGKVKRY--NGGELELIVPKIEIL 75 (75)
T ss_dssp EEEEEEEEEEE---EEETTEEEEEEEETTEEEEEEEETHHHHHHHHTS-TTSEEEEEEEEEEE--TTSSEEEEEEEEEEE
T ss_pred CEEEEEEEEEE---cCCCCEEEEEEEECCccEEEEEccHHhhHHhhcCCCCeEEEEEEEEEEE--CCccEEEEECEEEEC
Confidence 57899999998 2223799999999999999999999999999999999999999999986 355 99999888654
No 36
>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1). Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases.
Probab=98.61 E-value=1.5e-07 Score=85.82 Aligned_cols=74 Identities=19% Similarity=0.316 Sum_probs=65.2
Q ss_pred EEEEeeeEeeecCC-cEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeeccCCceEEEEccccccHH
Q psy9396 991 GIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINV 1067 (1149)
Q Consensus 991 G~I~~vk~~~TK~G-~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~~~i~~l~~ 1067 (1149)
.+|++++.+.||+| +|++++++|.+|.+++++|++.+. ....+.+|.++.|.|+++.. ++..++.+.++.++++
T Consensus 4 ~~v~~~~~~~tk~g~~~~~~~l~D~tg~i~~~~f~~~~~-~~~~l~~g~~v~v~G~v~~~--~~~~~l~~~~i~~l~~ 78 (83)
T cd04492 4 FLIKSKELRTAKNGKPYLALTLQDKTGEIEAKLWDASEE-DEEKFKPGDIVHVKGRVEEY--RGRLQLKIQRIRLVTE 78 (83)
T ss_pred EEEEEeeeecccCCCcEEEEEEEcCCCeEEEEEcCCChh-hHhhCCCCCEEEEEEEEEEe--CCceeEEEEEEEECCc
Confidence 47899999999999 799999999999999999998874 47889999999999999763 4678999999887763
No 37
>cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA contains six OB folds, which are involved in ssDNA binding and in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. This family also includes OB folds similar to those found in Escherichia coli SSB, the wedge domain of E. coli RecG (a branched-DNA-specific helicase), E. coli ssDNA specific exodeoxyribonuclease VII large subunit, Pyroco
Probab=98.43 E-value=1.4e-06 Score=76.57 Aligned_cols=71 Identities=27% Similarity=0.440 Sum_probs=63.6
Q ss_pred EEEEEEeeeEeeecCC-cEEEEEEEeCC-ceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeeccCCceEEEEcccc
Q psy9396 989 VSGIITELKLKTTYRG-KILIIVIDDNS-NSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063 (1149)
Q Consensus 989 v~G~I~~vk~~~TK~G-~mafltleD~t-g~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~~~i~ 1063 (1149)
++|+|++++.+.| | +|++++++|.+ +.+++++|++.++.+...+..|.++.|.|+++.. ++..+++++++.
T Consensus 2 v~g~v~~~~~~~~--~~~~~~~~l~D~~~~~i~~~~~~~~~~~~~~~~~~g~~v~v~g~v~~~--~~~~~l~~~~~~ 74 (75)
T cd03524 2 IVGIVVAVEEIRT--EGKVLIFTLTDGTGGTIRVTLFGELAEELENLLKEGQVVYIKGKVKKF--RGRLQLIVESIE 74 (75)
T ss_pred eEEEEEeeccccc--CCeEEEEEEEcCCCCEEEEEEEchHHHHHHhhccCCCEEEEEEEEEec--CCeEEEEeeeec
Confidence 7899999999888 5 79999999999 9999999999999999999999999999999863 467888887553
No 38
>PRK05588 histidinol-phosphatase; Provisional
Probab=98.43 E-value=1.9e-06 Score=96.33 Aligned_cols=67 Identities=18% Similarity=0.374 Sum_probs=52.6
Q ss_pred ccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchh---------hHHHHHHHHHhC-CCeeEeeeeeeeccc
Q psy9396 6 IHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLF---------GIIKFYKSAYNK-GIKPIIGCDVWITNE 74 (1149)
Q Consensus 6 v~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~---------G~~~f~~~ak~~-GIKpIiG~Ei~v~~~ 74 (1149)
+++|+||.|| .||..+++++|++|.+.|++.+ +|||..+. ....+.+..++. ++++++|+|+.+.++
T Consensus 2 ~D~H~HT~~s-~~~~~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~~~i~~~~~~~I~~GiE~~~~~~ 78 (255)
T PRK05588 2 FDTHIHTEFS-TDSKMKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYFNKYSKYRNNKLLLGIELGMEKD 78 (255)
T ss_pred eeecccCCCC-CCcccCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHHHHHHHHhcCCcceEEEecccCC
Confidence 5899999999 5999999999999999999988 99997431 122333334444 699999999976553
No 39
>PRK07329 hypothetical protein; Provisional
Probab=98.33 E-value=3e-06 Score=94.15 Aligned_cols=188 Identities=13% Similarity=0.036 Sum_probs=98.9
Q ss_pred ccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCch---hh--------HHHHHHHH----HhCCCeeEeeeeee
Q psy9396 6 IHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNL---FG--------IIKFYKSA----YNKGIKPIIGCDVW 70 (1149)
Q Consensus 6 v~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl---~G--------~~~f~~~a----k~~GIKpIiG~Ei~ 70 (1149)
.++|+||.|| -||..++++++++|. +.+|+|||..+ ++ ..++.+.. ++.+.++.+|+|+.
T Consensus 2 ~D~H~Ht~~s-~d~~~~~ee~~~~A~----~~i~~TdH~~~~~~~~~~~~~~~~~~~Y~~ei~~lk~ky~~~I~~GlE~~ 76 (246)
T PRK07329 2 RDQHLHTHFS-FDSDAKFEDYLTHFD----GEIVTTEHLDLSNPYDTGQDDVPDYAKYSAEIAELNEKYGNRIKKGIEIG 76 (246)
T ss_pred cccccCCCCC-CCCcchHHHHHHHhc----cCeEEecccCCCCCcccccccccCHHHHHHHHHHHHHHhhhhceEEEEeC
Confidence 4899999999 699999999999995 69999999643 11 23333222 45577999999997
Q ss_pred eccccc-------CCCCccEEEEEcccH-H---HHHHHH-HHHHHHHhhccCCcccccHHHHhcccc-CCCeEEEeCCCc
Q psy9396 71 ITNEIE-------NKKPSRLLLLVKNNN-G---YLQLCE-LLSKAYIENINYGRAEIRIEWLEKNKY-QDGLIALSGAHL 137 (1149)
Q Consensus 71 v~~~~~-------~~~~~hlllLAkN~~-G---y~nL~k-L~S~~~~~~~~~~~p~i~~e~L~~~~~-~~glIiis~~~~ 137 (1149)
..++.. ....+++++..--.. | +..-.+ .......+.+ .+.+.+. . +.|.+-+.|++.
T Consensus 77 ~~~~~~~~~~~~l~~~~~DyvIgSvH~~~~~~~~~~~~~~~~~~~~~~~Y--------~~~~~~~-v~~~~~fdvlgHpD 147 (246)
T PRK07329 77 YFAPREDDILDFLANKDFDLKLLSVHHNGVYDYLDDEVADMDKKELLQEY--------FEKMEEA-IGRVHDADVLAHFD 147 (246)
T ss_pred cccccHHHHHHHhccCCCCeEEEEEEEcCCCCCccHHHhcCCHHHHHHHH--------HHHHHHH-HHccCCCCEeeecc
Confidence 654321 112345554433211 1 100000 0000000101 1112211 1 122443344332
Q ss_pred chHHHHHhcC--ChHHHHHHHHHHHHhC-CCCeEEEEccCCCc--chHHHHHHHHHHHHhcCCC-EEEecCccccCc
Q psy9396 138 GDIGIAVQNG--RNDIAENFARRWSKIF-PDNFYIEIQRFKQP--NMNFQIQQFINIASNINLP-IVATHPIQFLKK 208 (1149)
Q Consensus 138 g~i~~~l~~~--~~~~a~~~~~~~~~~f-~~~~ylEi~~~~~~--~~~~~n~~l~~lA~~~~ip-lVatnDvhyl~~ 208 (1149)
- +.+....+ +.+.....+....+.. ..+..+|||..+.. ........++++++++|+| ++.++|+|....
T Consensus 148 l-~~r~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lEiNt~~~~~~~~~~~~~~~l~~~~~~g~~~i~~gSDAH~~~~ 223 (246)
T PRK07329 148 Y-GLRLFDLTVEELKAFEPQLTRIFAKMIDNDLAFELNTKSMYLYGNEGLYRYAIELYKQLGGKLFSIGSDAHKLEH 223 (246)
T ss_pred H-HHHhCCCCCcChHHHHHHHHHHHHHHHHcCCeEEEECcccccCCCCcchHHHHHHHHHcCCeEEEecCCCCCHHH
Confidence 1 11111111 1111222222222222 36789999987541 1122335678999999986 899999996653
No 40
>PRK06740 histidinol-phosphatase; Validated
Probab=97.88 E-value=9.6e-05 Score=85.63 Aligned_cols=44 Identities=14% Similarity=0.121 Sum_probs=32.2
Q ss_pred CCCeEEEEccC-CCcc---hHHHHHHHHHHHHhcCCCEEEecCccccC
Q psy9396 164 PDNFYIEIQRF-KQPN---MNFQIQQFINIASNINLPIVATHPIQFLK 207 (1149)
Q Consensus 164 ~~~~ylEi~~~-~~~~---~~~~n~~l~~lA~~~~iplVatnDvhyl~ 207 (1149)
..+..+|||.. +... +.--...++++++++|+|++.++|+|..+
T Consensus 250 ~~g~~lEINt~~~~r~~~~e~yP~~~il~~~~e~Gv~~tlgSDAH~p~ 297 (331)
T PRK06740 250 ETNTATEINAGLYYRYPVREMCPSPLFLQVLAKHEVPITLSSDAHYPN 297 (331)
T ss_pred HcCCEEEEECccccCCCCCCCCcCHHHHHHHHHCCCeEEEeeCCCCHH
Confidence 36789999985 3311 11124568889999999999999999664
No 41
>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain
Probab=97.41 E-value=0.0011 Score=63.41 Aligned_cols=77 Identities=21% Similarity=0.223 Sum_probs=68.3
Q ss_pred CceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchHHHHHHH-hhccCCcEEEEEEEEEeeccCCceEEEEcccc
Q psy9396 985 YSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNK-NILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063 (1149)
Q Consensus 985 ~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~~y~~~~-~~l~~~~~v~v~G~v~~~~~~~~~~ii~~~i~ 1063 (1149)
..+.|-|.|++++.. ++| .+|++|-|+..++.+++|...+.+.. ..+++|.-|++.|+++.-...|..++++++|.
T Consensus 22 ~~vwV~GEIs~~~~~--~~g-h~YftLkD~~a~i~~~~~~~~~~~i~~~~l~~G~~V~v~g~~~~y~~~G~~sl~v~~i~ 98 (99)
T PF13742_consen 22 PNVWVEGEISNLKRH--SSG-HVYFTLKDEEASISCVIFRSRARRIRGFDLKDGDKVLVRGRVSFYEPRGSLSLIVEDID 98 (99)
T ss_pred CCEEEEEEEeecEEC--CCc-eEEEEEEcCCcEEEEEEEHHHHhhCCCCCCCCCCEEEEEEEEEEECCCcEEEEEEEEeE
Confidence 478999999999887 445 79999999999999999999999988 88999999999999998655677999999887
Q ss_pred c
Q psy9396 1064 D 1064 (1149)
Q Consensus 1064 ~ 1064 (1149)
|
T Consensus 99 P 99 (99)
T PF13742_consen 99 P 99 (99)
T ss_pred C
Confidence 5
No 42
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=97.41 E-value=0.00049 Score=78.84 Aligned_cols=87 Identities=13% Similarity=0.200 Sum_probs=73.4
Q ss_pred cccccCCCCceEEEEEEEeeeEeeecCC-cEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeeccCCce
Q psy9396 977 YLSELKPTYSCTVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNI 1055 (1149)
Q Consensus 977 ~i~~l~~~~~v~v~G~I~~vk~~~TK~G-~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~~~~~ 1055 (1149)
.++++.++.++....+|.+.+...||+| ++..++|.|.||++++.+|... +.....+.+|.+|.|+|++.. +++.+
T Consensus 4 ~i~~l~~g~~v~~~~lv~~~~~~~~knG~~yl~l~l~D~tG~I~ak~W~~~-~~~~~~~~~g~vv~v~G~v~~--y~g~~ 80 (314)
T PRK13480 4 GIEELEVGEQVDHFLLIKSATKGVASNGKPFLTLILQDKSGDIEAKLWDVS-PEDEATYVPETIVHVKGDIIN--YRGRK 80 (314)
T ss_pred hHhhcCCCCEeeEEEEEEEceeeecCCCCeEEEEEEEcCCcEEEEEeCCCC-hhhHhhcCCCCEEEEEEEEEE--ECCcc
Confidence 4677777667777778999999999999 7899999999999999999865 455667899999999999985 57899
Q ss_pred EEEEccccccH
Q psy9396 1056 RINAEKIFDIN 1066 (1149)
Q Consensus 1056 ~ii~~~i~~l~ 1066 (1149)
|+.++++..++
T Consensus 81 Ql~i~~i~~~~ 91 (314)
T PRK13480 81 QLKVNQIRLAT 91 (314)
T ss_pred eEEEEEeEECC
Confidence 99998886654
No 43
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=97.15 E-value=0.025 Score=63.20 Aligned_cols=201 Identities=19% Similarity=0.161 Sum_probs=111.6
Q ss_pred cccccccccCchh-hccccHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHH---hCCCeeEeeeeeeecccccCCCC
Q psy9396 5 FIHLRLHSEYSII-DGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAY---NKGIKPIIGCDVWITNEIENKKP 80 (1149)
Q Consensus 5 fv~LHvHS~ySll-dg~~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak---~~GIKpIiG~Ei~v~~~~~~~~~ 80 (1149)
-+|||+||.||.- ...+.++.+++.|+..|++-|+--|-- --.+.+-.+... ..|..=+-|+.+-.+........
T Consensus 4 ~aDLHiHs~ys~a~S~~m~~~~Ia~~A~~KGl~lvGtgD~~-hP~w~e~ik~~~e~~e~g~~e~~~~~fi~t~evEd~~r 82 (403)
T COG1379 4 NADLHIHSHYSGATSKLMVLPNIAEYAKLKGLDLVGTGDCL-HPEWLEEIKKSIESDEDGTFEVKGVRFILTAEVEDSRR 82 (403)
T ss_pred ccceeeeeccccccccccchHHHHhhhhhcccceecccccC-ChHHHHHHHHHhhhccccccccceeEEEEEEeeccCCc
Confidence 3699999999953 345679999999999999999999843 233333333222 12333333333222222222345
Q ss_pred ccEEEEEcccHHHHHHHHHHHHHHHhhccCCcccccH--HHHhcc-ccCCCeEEEeCCCcchHHHHHhcCChHHHHHHHH
Q psy9396 81 SRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRI--EWLEKN-KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFAR 157 (1149)
Q Consensus 81 ~hlllLAkN~~Gy~nL~kL~S~~~~~~~~~~~p~i~~--e~L~~~-~~~~glIiis~~~~g~i~~~l~~~~~~~a~~~~~ 157 (1149)
.|.+++-.+-.--..|-...+....+-...+.|++.. ..|.+. +-.+|++.-.|++... .. +.+ . .+
T Consensus 83 VHhLlilPSl~~~~El~~~l~~~skni~~~grprv~~tg~el~e~v~dlggL~gPaHaFtPw-ts-lYk-~-------~d 152 (403)
T COG1379 83 VHHLLILPSLSAAEELSEWLSKYSKNIETEGRPRVYLTGAELAEIVKDLGGLIGPAHAFTPW-TS-LYK-K-------YD 152 (403)
T ss_pred eeEEEEcCcHHHHHHHHHHHHHhhcCccccCCceeeccHHHHHHHHHHcccceecccccCcc-HH-hhh-h-------hc
Confidence 6666666565555666555554321111224577643 334332 1346777666665432 12 111 1 22
Q ss_pred HHHHhCCCC--eEEEEccCCCcchHHHHHHHHHHHHhcCCCEEEecCccccC------------ccCchHHHHHHHHHc
Q psy9396 158 RWSKIFPDN--FYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLK------------KTEFLAHEVRTCIAE 222 (1149)
Q Consensus 158 ~~~~~f~~~--~ylEi~~~~~~~~~~~n~~l~~lA~~~~iplVatnDvhyl~------------~eD~~~~~vL~aI~~ 222 (1149)
-+.+.|++. -|+|+- +.-+..+...+ .+-+.+|.+.++|+|... -+|.....+..||+.
T Consensus 153 Sl~e~yg~a~iDfvELG---LSADtdmAD~I---~el~~~pFLtNSDAHSp~phrLgREfn~f~v~~~sF~~~r~Ai~~ 225 (403)
T COG1379 153 SLKECYGDAMIDFVELG---LSADTDMADMI---EELHRLPFLTNSDAHSPYPHRLGREFNQFEVEEISFEELRKAIKG 225 (403)
T ss_pred hHHHHhCccchhHHHhc---cccCchHHHHH---HHhccCCcccccccCCCchhhhhhhhheeecccCCHHHHHHHHhc
Confidence 356677633 255553 33344444444 444578999999999833 246666667778876
No 44
>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam
Probab=96.98 E-value=0.0018 Score=61.02 Aligned_cols=75 Identities=19% Similarity=0.211 Sum_probs=60.6
Q ss_pred eEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchHHHH---HHHhhccCCcEEEEEEEEEeeccCCceEEEEcccc
Q psy9396 987 CTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYE---KNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063 (1149)
Q Consensus 987 v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~~y~---~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~~~i~ 1063 (1149)
+.++|+|.+++... ...-++|+|.||.+++.+|...=+ .....+.+|.++.|.|+++. +++..++.+.++.
T Consensus 2 v~~vG~V~~~~~~~----~~~~~tL~D~TG~I~~~~W~~~~~~~~~~~~~~~~g~~v~v~G~v~~--~~g~~ql~i~~i~ 75 (95)
T cd04478 2 VTLVGVVRNVEEQS----TNITYTIDDGTGTIEVRQWLDDDNDDSSEVEPIEEGTYVRVFGNLKS--FQGKKSIMAFSIR 75 (95)
T ss_pred EEEEEEEEeeeEcc----cEEEEEEECCCCcEEEEEeCCCCCcccccccccccCCEEEEEEEEcc--cCCeeEEEEEEEE
Confidence 67899999877653 367899999999999999975432 34667899999999999975 5688999998887
Q ss_pred ccHH
Q psy9396 1064 DINV 1067 (1149)
Q Consensus 1064 ~l~~ 1067 (1149)
++++
T Consensus 76 ~v~d 79 (95)
T cd04478 76 PVTD 79 (95)
T ss_pred EeCC
Confidence 7764
No 45
>cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein
Probab=96.86 E-value=0.0091 Score=57.86 Aligned_cols=77 Identities=19% Similarity=0.348 Sum_probs=61.4
Q ss_pred ceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEc-----hHHHHHHHhhccCCcEEEEEEEEEeeccCCceEEEEc
Q psy9396 986 SCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIIN-----NQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAE 1060 (1149)
Q Consensus 986 ~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvF-----p~~y~~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~~ 1060 (1149)
.+++.|.|.++|.. |+++|++|.|.++.+.+++. ++.|..+...|..|..|.|+|.+.... .++..+.++
T Consensus 1 ~v~v~GwV~~~R~~----g~~~Fi~lrd~~~~lQ~v~~~~~~~~~~~~~~~~~l~~g~~V~v~G~v~~~~-~g~~El~~~ 75 (108)
T cd04322 1 EVSVAGRIMSKRGS----GKLSFADLQDESGKIQVYVNKDDLGEEEFEDFKKLLDLGDIIGVTGTPFKTK-TGELSIFVK 75 (108)
T ss_pred CEEEEEEEEEEecC----CCeEEEEEEECCeEEEEEEECCCCCHHHHHHHHhcCCCCCEEEEEEEEEecC-CCCEEEEeC
Confidence 36899999987763 35899999999999999886 356777777688999999999998764 467888887
Q ss_pred cccccHH
Q psy9396 1061 KIFDINV 1067 (1149)
Q Consensus 1061 ~i~~l~~ 1067 (1149)
++.-+..
T Consensus 76 ~~~ils~ 82 (108)
T cd04322 76 EFTLLSK 82 (108)
T ss_pred EeEEeec
Confidence 7755543
No 46
>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization.
Probab=96.79 E-value=0.0041 Score=58.64 Aligned_cols=68 Identities=22% Similarity=0.340 Sum_probs=53.9
Q ss_pred EEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchHHH--------------------HHHHhhccCCcEEEEEEEEEe
Q psy9396 989 VSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLY--------------------EKNKNILKENELLIVSGKVLE 1048 (1149)
Q Consensus 989 v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~~y--------------------~~~~~~l~~~~~v~v~G~v~~ 1048 (1149)
|+|+|.+++...| +..++|+|.||.+|+++|-..= .+..+.+..|.++.|.|++..
T Consensus 2 ivG~V~sv~~~~~----~~~~tLdDgTG~Ie~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~vvrV~G~i~~ 77 (92)
T cd04483 2 ILGTVVSRRERET----FYSFGVDDGTGVVNCVCWKNLSYAEVSSRSDAARILKSALMALKQAKVLEIGDLLRVRGSIRT 77 (92)
T ss_pred eEEEEEEEEecCC----eEEEEEecCCceEEEEEEcCcCcccccccccccccccccccccccccccCCCCEEEEEEEEec
Confidence 6899998866553 6789999999999999996431 023456899999999999985
Q ss_pred eccCCceEEEEccc
Q psy9396 1049 DRFLKNIRINAEKI 1062 (1149)
Q Consensus 1049 ~~~~~~~~ii~~~i 1062 (1149)
+++..|+.++.+
T Consensus 78 --frg~~ql~i~~~ 89 (92)
T cd04483 78 --YRGEREINASVV 89 (92)
T ss_pred --cCCeeEEEEEEE
Confidence 678889988765
No 47
>cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ. RecJ is an ssDNA-specific exonuclease. Although the overall sequence similarity of these proteins to eubacterial RecJ proteins is marginal, they appear to carry motifs, which have been shown to be essential for nuclease function in Escherichia coli RecJ. In addition to this OB fold, most proteins in this subfamily contain: i) an N-terminal OB fold belonging to a different domain family (the ribosomal S1-like RNA-binding family); and ii) a domain, C-terminal to OBF2, characteristic of DHH family proteins. DHH family proteins include E. coli RecJ, and are predicted to have a phosphoesterase function.
Probab=96.72 E-value=0.0052 Score=55.34 Aligned_cols=72 Identities=15% Similarity=0.189 Sum_probs=59.5
Q ss_pred eEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeeccCCceEEEEccccc
Q psy9396 987 CTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064 (1149)
Q Consensus 987 v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~~~i~~ 1064 (1149)
+++-|.|++.+. ++| -.|++|.|..+++++++|...-.+....+++|.-|.+.|+++. .+|..|+.++++.-
T Consensus 1 v~v~GeVs~~~~---~~G-HvyfsLkD~~a~i~cv~f~~~~~~~~~~l~~Gd~V~v~G~v~~--~~G~~ql~v~~i~~ 72 (73)
T cd04487 1 VHIEGEVVQIKQ---TSG-PTIFTLRDETGTVWAAAFEEAGVRAYPEVEVGDIVRVTGEVEP--RDGQLQIEVESLEV 72 (73)
T ss_pred CEEEEEEecccc---CCC-CEEEEEEcCCEEEEEEEEchhccCCcCCCCCCCEEEEEEEEec--CCeEEEEEEeeEEE
Confidence 357788988874 556 4899999999999999998766556677899999999999987 46889999988753
No 48
>PRK06461 single-stranded DNA-binding protein; Reviewed
Probab=96.69 E-value=0.0065 Score=60.95 Aligned_cols=85 Identities=22% Similarity=0.301 Sum_probs=66.1
Q ss_pred ccccccCCC-CceEEEEEEEee---eEeeecCC--cEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEE-EEEEe
Q psy9396 976 IYLSELKPT-YSCTVSGIITEL---KLKTTYRG--KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVS-GKVLE 1048 (1149)
Q Consensus 976 ~~i~~l~~~-~~v~v~G~I~~v---k~~~TK~G--~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~-G~v~~ 1048 (1149)
+.|+||.++ ..+.+.|.|.++ +..++|.| ++.-++|.|.||.+.+++|.+.. ..+++|.+|.|+ |.++.
T Consensus 5 ~kI~dL~~g~~~v~~~~~V~~i~~~~~~~~k~~~~~v~~~~l~D~TG~I~~tlW~~~a----~~l~~GdvV~I~na~v~~ 80 (129)
T PRK06461 5 TKIKDLKPGMERVNVTVRVLEVGEPKVIQTKGGPRTISEAVVGDETGRVKLTLWGEQA----GSLKEGEVVEIENAWTTL 80 (129)
T ss_pred eEHHHcCCCCCceEEEEEEEEcCCceEEEeCCCceEEEEEEEECCCCEEEEEEeCCcc----ccCCCCCEEEEECcEEee
Confidence 467888877 478888999965 45577766 36789999999999999999743 357899999999 67664
Q ss_pred eccCCceEEEEcc---ccccH
Q psy9396 1049 DRFLKNIRINAEK---IFDIN 1066 (1149)
Q Consensus 1049 ~~~~~~~~ii~~~---i~~l~ 1066 (1149)
+++.+++.+.+ |..++
T Consensus 81 --f~G~lqL~i~~~~~i~~~~ 99 (129)
T PRK06461 81 --YRGKVQLNVGKYGSISESD 99 (129)
T ss_pred --eCCEEEEEECCCEEEEECC
Confidence 57889999884 55544
No 49
>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ funct
Probab=96.62 E-value=0.0074 Score=58.15 Aligned_cols=71 Identities=21% Similarity=0.331 Sum_probs=56.9
Q ss_pred cccccCCCC-ceEEEEEEEe---eeEeeecCC--cEEEEEEEeC-CceEEEEEchHHHHHHHhhccCCcEEEEE-EEEE
Q psy9396 977 YLSELKPTY-SCTVSGIITE---LKLKTTYRG--KILIIVIDDN-SNSVEVIINNQLYEKNKNILKENELLIVS-GKVL 1047 (1149)
Q Consensus 977 ~i~~l~~~~-~v~v~G~I~~---vk~~~TK~G--~mafltleD~-tg~ie~vvFp~~y~~~~~~l~~~~~v~v~-G~v~ 1047 (1149)
+|++|.++. ..+|.|.|+. ++..++++| ++.-++|-|+ +|.+.+++|++..++|.+.|++|.++.|+ |+|.
T Consensus 1 pI~~L~p~~~~~~I~~rV~~k~~~~~f~~~~~~g~~~~~~l~De~~~~I~~t~~~~~~~~f~~~l~eG~vy~i~~~~V~ 79 (104)
T cd04474 1 PISSLNPYQNKWTIKARVTNKSDIRTWSNARGEGKLFSFDLLDEDGGEIRATFFNDAVDKFYDLLEVGKVYYISKGSVK 79 (104)
T ss_pred ChhHccCCCCcEEEEEEEeeccccccccCCCCCcEEEEEEEEECCCCEEEEEEehHHHHHhhcccccccEEEEeccEEe
Confidence 356777765 7889999985 566666654 5667889999 88999999999999999999999999885 4444
No 50
>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for
Probab=96.43 E-value=0.023 Score=52.75 Aligned_cols=76 Identities=13% Similarity=0.166 Sum_probs=54.9
Q ss_pred ceEEEEEEEeeeEeeecCCcEEEEEEEeCCc-eEEEEEch--HHHHHHHhhccCCcEEEEEEEEEeeccC-----CceEE
Q psy9396 986 SCTVSGIITELKLKTTYRGKILIIVIDDNSN-SVEVIINN--QLYEKNKNILKENELLIVSGKVLEDRFL-----KNIRI 1057 (1149)
Q Consensus 986 ~v~v~G~I~~vk~~~TK~G~mafltleD~tg-~ie~vvFp--~~y~~~~~~l~~~~~v~v~G~v~~~~~~-----~~~~i 1057 (1149)
.++++|+|.++|.. .|+++|+.|.|.+| .+.+++-+ +.|+... .+..+..|.|+|.+..+... ++..+
T Consensus 1 ~V~v~Gwv~~~R~~---~~~~~Fi~LrD~~g~~iQvv~~~~~~~~~~~~-~l~~~s~V~V~G~v~~~~~~~~~~~~~~Ei 76 (86)
T cd04321 1 KVTLNGWIDRKPRI---VKKLSFADLRDPNGDIIQLVSTAKKDAFSLLK-SITAESPVQVRGKLQLKEAKSSEKNDEWEL 76 (86)
T ss_pred CEEEEEeEeeEeCC---CCceEEEEEECCCCCEEEEEECCCHHHHHHHh-cCCCCcEEEEEEEEEeCCCcCCCCCCCEEE
Confidence 36899999887653 23599999999999 58987764 3454443 37789999999999875311 55677
Q ss_pred EEcccccc
Q psy9396 1058 NAEKIFDI 1065 (1149)
Q Consensus 1058 i~~~i~~l 1065 (1149)
.++++.-+
T Consensus 77 ~~~~i~il 84 (86)
T cd04321 77 VVDDIQTL 84 (86)
T ss_pred EEEEEEEe
Confidence 77666543
No 51
>COG1555 ComEA DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]
Probab=96.38 E-value=0.0039 Score=63.98 Aligned_cols=45 Identities=31% Similarity=0.426 Sum_probs=41.5
Q ss_pred ccccCCccHHHHHHHHHHHh-cCCCCCHHHHHhhcccCCCCHHHHHHHH
Q psy9396 835 LGAIKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLI 882 (1149)
Q Consensus 835 l~~Ikgvg~~~~~~i~~~r~-~g~f~~~~df~~r~~~~~~~~~~le~Li 882 (1149)
|..++|||+..|++|++.|+ +|||+|++|+.+. +.|+.+.+|.|.
T Consensus 99 L~~lpgIG~~kA~aIi~yRe~~G~f~sv~dL~~v---~GiG~~~~ekl~ 144 (149)
T COG1555 99 LQALPGIGPKKAQAIIDYREENGPFKSVDDLAKV---KGIGPKTLEKLK 144 (149)
T ss_pred HHHCCCCCHHHHHHHHHHHHHcCCCCcHHHHHhc---cCCCHHHHHHHH
Confidence 48899999999999999999 8999999999887 779999999874
No 52
>cd04484 polC_OBF polC_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold nucleic acid binding domain of Bacillus subtilis type C replicative DNA polymerase III alpha subunit (polC). Replication in B. subtilis and Staphylococcus aureus requires two different polymerases, polC and DnaE. The holoenzyme is thought to include the two different polymerases. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=96.34 E-value=0.033 Score=51.35 Aligned_cols=76 Identities=26% Similarity=0.331 Sum_probs=62.1
Q ss_pred eEEEEEEEeeeEeeecCC-cEEEEEEEeCCceEEEEEchH-HHHHHHhhcc-CCcEEEEEEEEEeeccCCceEEEEcccc
Q psy9396 987 CTVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQ-LYEKNKNILK-ENELLIVSGKVLEDRFLKNIRINAEKIF 1063 (1149)
Q Consensus 987 v~v~G~I~~vk~~~TK~G-~mafltleD~tg~ie~vvFp~-~y~~~~~~l~-~~~~v~v~G~v~~~~~~~~~~ii~~~i~ 1063 (1149)
+++-|.|-.+..+.+|+| .+.-+.+.|.|+.+-+-.|.+ .-+.. ..++ +|..|.++|+++.|.+.+...+.++.+.
T Consensus 2 v~i~G~Vf~~e~re~k~g~~i~~~~itD~t~Si~~K~F~~~~~~~~-~~ik~~G~~v~v~G~v~~D~f~~e~~~~i~~i~ 80 (82)
T cd04484 2 VVVEGEVFDLEIRELKSGRKILTFKVTDYTSSITVKKFLRKDEKDK-EELKSKGDWVRVRGKVQYDTFSKELVLMINDIE 80 (82)
T ss_pred EEEEEEEEEEEEEEecCCCEEEEEEEEcCCCCEEEEEeccCChhHH-hhcccCCCEEEEEEEEEEccCCCceEEEeeeEE
Confidence 678899999999999999 455789999999999999984 32333 4578 9999999999999877777777776553
No 53
>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG. RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched cha
Probab=96.32 E-value=0.027 Score=49.69 Aligned_cols=67 Identities=24% Similarity=0.359 Sum_probs=51.0
Q ss_pred EEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEch-HHHHHHHhhccCCcEEEEEEEEEeeccCCceEEEE
Q psy9396 989 VSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINN-QLYEKNKNILKENELLIVSGKVLEDRFLKNIRINA 1059 (1149)
Q Consensus 989 v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp-~~y~~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~ 1059 (1149)
+.|.|.+....+++++++.-+++.|.+|.+++++|. ..|. ...++.|..+.+.|+++. +++..++.-
T Consensus 2 i~~~V~~~~~~~~~~~~~~~~~~~D~~g~i~~~~F~~~~~~--~~~~~~G~~~~v~Gkv~~--~~~~~qi~~ 69 (75)
T cd04488 2 VEGTVVSVEVVPRRGRRRLKVTLSDGTGTLTLVFFNFQPYL--KKQLPPGTRVRVSGKVKR--FRGGLQIVH 69 (75)
T ss_pred EEEEEEEEEeccCCCccEEEEEEEcCCCEEEEEEECCCHHH--HhcCCCCCEEEEEEEEee--cCCeeEEeC
Confidence 567777776665552268889999999999999997 4443 466899999999999986 345666653
No 54
>PF12836 HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE_A 3BZK_A 3BZC_A 2DUY_A.
Probab=96.29 E-value=0.0033 Score=55.23 Aligned_cols=45 Identities=31% Similarity=0.381 Sum_probs=34.6
Q ss_pred cccccCCccHHHHHHHHHHHh-cCCCCCHHHHHhhcccCCCCHHHHHHH
Q psy9396 834 GLGAIKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSL 881 (1149)
Q Consensus 834 gl~~Ikgvg~~~~~~i~~~r~-~g~f~~~~df~~r~~~~~~~~~~le~L 881 (1149)
-|..++|+|+..|++|++.|+ +|+|.|++||.+. ..++.+.++.|
T Consensus 15 eL~~lpgi~~~~A~~Iv~~R~~~G~f~s~~dL~~v---~gi~~~~~~~l 60 (65)
T PF12836_consen 15 ELQALPGIGPKQAKAIVEYREKNGPFKSLEDLKEV---PGIGPKTYEKL 60 (65)
T ss_dssp HHHTSTT--HHHHHHHHHHHHHH-S-SSGGGGGGS---TT--HHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHhCcCCCCHHHHhhC---CCCCHHHHHHH
Confidence 478999999999999999998 8999999999866 56888888876
No 55
>COG5235 RFA2 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication, recombination, and repair]
Probab=96.25 E-value=0.013 Score=61.47 Aligned_cols=76 Identities=28% Similarity=0.366 Sum_probs=60.5
Q ss_pred ceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchHH-H-HHHHhhccCCcEEEEEEEEEeeccCCceEEEEcccc
Q psy9396 986 SCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQL-Y-EKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063 (1149)
Q Consensus 986 ~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~~-y-~~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~~~i~ 1063 (1149)
.|+++|+|.+++...|. .|+++||+||++||..||.. | +.....+.+++.|.|.|.+.. ++|...|-+..|.
T Consensus 68 ~V~fVGvvrni~~~ttn----~~~~iEDGTG~Ievr~W~~~~~~~e~~~d~~~~~yvkV~G~lk~--F~GK~~I~~~~i~ 141 (258)
T COG5235 68 NVQFVGVVRNIKTSTTN----SMFVIEDGTGSIEVRFWPGNSYEEEQCKDLEEQNYVKVNGSLKT--FNGKRSISASHIS 141 (258)
T ss_pred eEEEEEEEEeeeecccc----eEEEEecCCceEEEEecCCCchHHHhccccccccEEEEecceee--eCCeeEEehhhee
Confidence 68999999998877664 47999999999999999963 2 344566778889999999975 6777788777777
Q ss_pred ccHH
Q psy9396 1064 DINV 1067 (1149)
Q Consensus 1064 ~l~~ 1067 (1149)
++++
T Consensus 142 ~I~d 145 (258)
T COG5235 142 AIED 145 (258)
T ss_pred eccc
Confidence 7653
No 56
>cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose.
Probab=95.86 E-value=0.064 Score=51.52 Aligned_cols=77 Identities=23% Similarity=0.318 Sum_probs=56.5
Q ss_pred ceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEch----HHHHHHHhhccCCcEEEEEEEEEeecc-CCceEEEEc
Q psy9396 986 SCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINN----QLYEKNKNILKENELLIVSGKVLEDRF-LKNIRINAE 1060 (1149)
Q Consensus 986 ~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp----~~y~~~~~~l~~~~~v~v~G~v~~~~~-~~~~~ii~~ 1060 (1149)
.++++|+|.++|.. |+++|++|.|.+|.+.+++.. +.|+... .+..+.+|.|+|.+..+.. ..+..+.++
T Consensus 1 ~V~v~Gwv~~~R~~----gk~~Fi~lrD~~g~iQ~v~~~~~~~~~~~~~~-~l~~~s~v~V~G~v~~~~~~~~~~Ei~~~ 75 (103)
T cd04319 1 KVTLAGWVYRKREV----GKKAFIVLRDSTGIVQAVFSKDLNEEAYREAK-KVGIESSVIVEGAVKADPRAPGGAEVHGE 75 (103)
T ss_pred CEEEEEEEEeEEcC----CCeEEEEEecCCeeEEEEEeCCCCHHHHHHHh-CCCCCCEEEEEEEEEECCCCCCCEEEEEE
Confidence 37899999887663 357999999999999998874 3455443 4778999999999987421 234567777
Q ss_pred cccccHH
Q psy9396 1061 KIFDINV 1067 (1149)
Q Consensus 1061 ~i~~l~~ 1067 (1149)
++.-+..
T Consensus 76 ~i~vl~~ 82 (103)
T cd04319 76 KLEIIQN 82 (103)
T ss_pred EEEEEec
Confidence 7666654
No 57
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes.
Probab=95.83 E-value=0.062 Score=52.09 Aligned_cols=79 Identities=22% Similarity=0.332 Sum_probs=59.0
Q ss_pred CCceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchH-----HHHHHHhhccCCcEEEEEEEEEeeccC-CceEE
Q psy9396 984 TYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQ-----LYEKNKNILKENELLIVSGKVLEDRFL-KNIRI 1057 (1149)
Q Consensus 984 ~~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~-----~y~~~~~~l~~~~~v~v~G~v~~~~~~-~~~~i 1057 (1149)
+..+++.|.|.++|.. |+++|++|.|.+|.+.+++..+ .|+.. ..|..+.+|.|+|.+..+... ++..+
T Consensus 12 g~~V~v~Gwv~~~R~~----g~~~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~-~~l~~es~V~V~G~v~~~~~~~~~~Ei 86 (108)
T cd04316 12 GEEVTVAGWVHEIRDL----GGIKFVILRDREGIVQVTAPKKKVDKELFKTV-RKLSRESVISVTGTVKAEPKAPNGVEI 86 (108)
T ss_pred CCEEEEEEEEEeeecc----CCeEEEEEecCCeeEEEEEeCCCCCHHHHHHH-hCCCCcCEEEEEEEEEeCCCCCCCEEE
Confidence 3479999999877663 3489999999999999988643 45544 347889999999999875321 34677
Q ss_pred EEccccccHH
Q psy9396 1058 NAEKIFDINV 1067 (1149)
Q Consensus 1058 i~~~i~~l~~ 1067 (1149)
.++++.-+..
T Consensus 87 ~~~~i~il~~ 96 (108)
T cd04316 87 IPEEIEVLSE 96 (108)
T ss_pred EEeEEEEEeC
Confidence 7777766654
No 58
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=95.62 E-value=0.13 Score=62.16 Aligned_cols=78 Identities=17% Similarity=0.118 Sum_probs=68.3
Q ss_pred CceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeeccCCceEEEEccccc
Q psy9396 985 YSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064 (1149)
Q Consensus 985 ~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~~~i~~ 1064 (1149)
..++|-|.|++++.. ++| -+|++|-|....+.|++|...+.+..-.+++|.-|+|.|+++.-..+|..+++|++|.+
T Consensus 24 ~~v~v~gEis~~~~~--~sG-H~Yf~Lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~v~g~~~~y~~~g~~ql~v~~i~~ 100 (438)
T PRK00286 24 GQVWVRGEISNFTRH--SSG-HWYFTLKDEIAQIRCVMFKGSARRLKFKPEEGMKVLVRGKVSLYEPRGDYQLIVEEIEP 100 (438)
T ss_pred CcEEEEEEeCCCeeC--CCC-eEEEEEEcCCcEEEEEEEcChhhcCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEeee
Confidence 378999999999875 566 68999999999999999999998888889999999999999974446779999999976
Q ss_pred c
Q psy9396 1065 I 1065 (1149)
Q Consensus 1065 l 1065 (1149)
.
T Consensus 101 ~ 101 (438)
T PRK00286 101 A 101 (438)
T ss_pred C
Confidence 3
No 59
>cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis.
Probab=95.60 E-value=0.066 Score=51.26 Aligned_cols=77 Identities=13% Similarity=0.306 Sum_probs=56.4
Q ss_pred ceEEEEEEEeeeEeeecCC-cEEEEEEEeCCceEEEEEchH-------HHHHHHhhccCCcEEEEEEEEEeeccC-----
Q psy9396 986 SCTVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQ-------LYEKNKNILKENELLIVSGKVLEDRFL----- 1052 (1149)
Q Consensus 986 ~v~v~G~I~~vk~~~TK~G-~mafltleD~tg~ie~vvFp~-------~y~~~~~~l~~~~~v~v~G~v~~~~~~----- 1052 (1149)
.+++.|.|.++|.. | +++|++|.|.+|.+.+++-++ .++.. ..|..+.+|.|+|.+......
T Consensus 1 ~V~i~Gwv~~~R~~----g~k~~Fi~LrD~sg~iQ~v~~~~~~~~~~~~~~~~-~~l~~es~V~V~G~v~~~~~~~~~~~ 75 (102)
T cd04320 1 EVLIRARVHTSRAQ----GAKLAFLVLRQQGYTIQGVLAASAEGVSKQMVKWA-GSLSKESIVDVEGTVKKPEEPIKSCT 75 (102)
T ss_pred CEEEEEEEEEeecC----CCceEEEEEecCCceEEEEEeCCcccCCHHHHHHH-hcCCCccEEEEEEEEECCCCcccCCC
Confidence 36889999877653 3 599999999999999999743 23333 357889999999999864211
Q ss_pred -CceEEEEccccccHH
Q psy9396 1053 -KNIRINAEKIFDINV 1067 (1149)
Q Consensus 1053 -~~~~ii~~~i~~l~~ 1067 (1149)
++..+.++++.-+..
T Consensus 76 ~~~~El~~~~i~il~~ 91 (102)
T cd04320 76 QQDVELHIEKIYVVSE 91 (102)
T ss_pred cCcEEEEEEEEEEEec
Confidence 456777777766543
No 60
>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende
Probab=95.59 E-value=0.035 Score=52.21 Aligned_cols=72 Identities=19% Similarity=0.258 Sum_probs=58.7
Q ss_pred EEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchHH--HHHHHhhccCCcEEEEEEEEEeeccCCceEEEEcccccc
Q psy9396 988 TVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQL--YEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065 (1149)
Q Consensus 988 ~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~~--y~~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~~~i~~l 1065 (1149)
+|-|.|++++.. .+.| -.|++|.|.++++++++|... +.+....+++|..|.+.|.+... . |+.++++..+
T Consensus 2 ~v~GeVs~~~~~-~~sG-H~yFtlkD~~~~i~cv~f~~~g~~~~~~~~l~~Gd~V~v~G~v~~y--~---ql~ve~l~~~ 74 (91)
T cd04482 2 RVTGKVVEEPRT-IEGG-HVFFKISDGTGEIDCAAYEPTKEFRDVVRLLIPGDEVTVYGSVRPG--T---TLNLEKLRVI 74 (91)
T ss_pred EEEEEEeCCeec-CCCC-CEEEEEECCCcEEEEEEECcccccccccCCCCCCCEEEEEEEEecC--C---EEEEEEEEEC
Confidence 577888888752 1446 489999999999999999887 77888889999999999999762 2 8998888765
Q ss_pred H
Q psy9396 1066 N 1066 (1149)
Q Consensus 1066 ~ 1066 (1149)
.
T Consensus 75 g 75 (91)
T cd04482 75 R 75 (91)
T ss_pred C
Confidence 3
No 61
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=95.55 E-value=0.12 Score=61.29 Aligned_cols=78 Identities=18% Similarity=0.163 Sum_probs=68.9
Q ss_pred CceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeeccCCceEEEEccccc
Q psy9396 985 YSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064 (1149)
Q Consensus 985 ~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~~~i~~ 1064 (1149)
..|+|-|.|++++.+.+ | -+|++|-|....+.+++|-....+..-.+++|.-|+|.|+++.=..+|..|++++.+.+
T Consensus 24 ~~V~v~GEISn~t~~~s--g-H~YFtLKD~~A~i~c~mf~~~~~~l~f~p~eG~~V~v~G~is~Y~~rG~YQi~~~~~~p 100 (440)
T COG1570 24 GQVWVRGEISNFTRPAS--G-HLYFTLKDERAQIRCVMFKGNNRRLKFRPEEGMQVLVRGKISLYEPRGDYQIVAESMEP 100 (440)
T ss_pred CeEEEEEEecCCccCCC--c-cEEEEEccCCceEEEEEEcCcccccCCCccCCCEEEEEEEEEEEcCCCceEEEEecCCc
Confidence 37899999999987654 5 78999999999999999999999998889999999999999974446789999999987
Q ss_pred c
Q psy9396 1065 I 1065 (1149)
Q Consensus 1065 l 1065 (1149)
-
T Consensus 101 ~ 101 (440)
T COG1570 101 A 101 (440)
T ss_pred C
Confidence 4
No 62
>cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like A
Probab=95.54 E-value=0.067 Score=49.41 Aligned_cols=74 Identities=23% Similarity=0.396 Sum_probs=54.0
Q ss_pred ceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchHH----HHHHHhhccCCcEEEEEEEEEeecc----CCceEE
Q psy9396 986 SCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQL----YEKNKNILKENELLIVSGKVLEDRF----LKNIRI 1057 (1149)
Q Consensus 986 ~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~~----y~~~~~~l~~~~~v~v~G~v~~~~~----~~~~~i 1057 (1149)
.+++.|.|.++|.. |+++|++|.|.+|.+.+++-.+. ++ .-..|..+.+|.|+|.+..... .++..+
T Consensus 1 ~V~i~Gwv~~~R~~----g~~~Fi~Lrd~~~~iQ~v~~~~~~~~~~~-~~~~l~~~s~V~v~G~~~~~~~~~~~~~~~El 75 (85)
T cd04100 1 EVTLAGWVHSRRDH----GGLIFIDLRDGSGIVQVVVNKEELGEFFE-EAEKLRTESVVGVTGTVVKRPEGNLATGEIEL 75 (85)
T ss_pred CEEEEEEEehhccC----CCEEEEEEEeCCeeEEEEEECCcChHHHH-HHhCCCCCCEEEEEeEEEECCCCCCCCCCEEE
Confidence 36789999877652 35999999999999999886542 33 3345888999999999987531 445666
Q ss_pred EEccccc
Q psy9396 1058 NAEKIFD 1064 (1149)
Q Consensus 1058 i~~~i~~ 1064 (1149)
.++++.-
T Consensus 76 ~~~~i~i 82 (85)
T cd04100 76 QAEELEV 82 (85)
T ss_pred EEeEEEE
Confidence 6665543
No 63
>cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with
Probab=95.49 E-value=0.088 Score=48.58 Aligned_cols=73 Identities=18% Similarity=0.350 Sum_probs=52.0
Q ss_pred ceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchHH---HHHHHhhccCCcEEEEEEEEEeecc----CCceEEE
Q psy9396 986 SCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQL---YEKNKNILKENELLIVSGKVLEDRF----LKNIRIN 1058 (1149)
Q Consensus 986 ~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~~---y~~~~~~l~~~~~v~v~G~v~~~~~----~~~~~ii 1058 (1149)
.+++.|.|.++|.. |+++|++|.|.+|.+.+++..+. ++.. ..|..+.+|.|+|.+..... .++..+.
T Consensus 1 ~V~v~Gwv~~~R~~----g~~~Fi~LrD~~~~iQ~v~~~~~~~~~~~~-~~l~~es~V~V~G~v~~~~~~~~~~~~~Ei~ 75 (84)
T cd04323 1 RVKVFGWVHRLRSQ----KKLMFLVLRDGTGFLQCVLSKKLVTEFYDA-KSLTQESSVEVTGEVKEDPRAKQAPGGYELQ 75 (84)
T ss_pred CEEEEEEEEEEecC----CCcEEEEEEcCCeEEEEEEcCCcchhHHHH-hcCCCcCEEEEEEEEEECCcccCCCCCEEEE
Confidence 36889999877663 45899999999999999887543 3333 34778999999999987531 1234455
Q ss_pred Ecccc
Q psy9396 1059 AEKIF 1063 (1149)
Q Consensus 1059 ~~~i~ 1063 (1149)
++++.
T Consensus 76 ~~~i~ 80 (84)
T cd04323 76 VDYLE 80 (84)
T ss_pred EEEEE
Confidence 55443
No 64
>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB). SSoSSB has a single OB fold, and it physically and functionally interacts with RNA polymerase. In vitro, SSoSSB can substitute for the basal transcription factor TBP, stimulating transcription from promoters under conditions in which TBP is limiting, and supporting transcription when TBP is absent. SSoSSB selectively melts the duplex DNA of promoter sequences. It also relieves transcriptional repression by the chromatin Alba. In addition, SSoSSB activates reverse gyrase activity, which involves DNA binding, DNA cleavage, strand passage and ligation. SSoSSB stimulates all these steps in the presence of the chromatin protein, Sul7d. SSoSSB antagonizes the inhibitory effect of Sul7d on reverse gyrase supercoiling activity. It also physically and functionally interacts with Mini-chromosome Maintenance (MCM), stimulating
Probab=95.46 E-value=0.076 Score=48.69 Aligned_cols=69 Identities=14% Similarity=0.250 Sum_probs=51.1
Q ss_pred EEEEEEeeeEeee--cCC---cEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEE-EEEEeeccCCceEEEEccc
Q psy9396 989 VSGIITELKLKTT--YRG---KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVS-GKVLEDRFLKNIRINAEKI 1062 (1149)
Q Consensus 989 v~G~I~~vk~~~T--K~G---~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~-G~v~~~~~~~~~~ii~~~i 1062 (1149)
+.|.|.++-..++ ++| ++.-++|.|.||.+.+++|.+.- ...+++|.++.++ |+++. +++.+++.+.+-
T Consensus 2 v~~~V~~~~~~~~~~~~g~~~~~~~~~l~D~TG~i~~~~W~~~~---~~~~~~G~vv~i~~~~v~~--~~g~~ql~i~~~ 76 (82)
T cd04491 2 VEGKVLSISEPREFTRDGSEGKVQSGLVGDETGTIRFTLWDEKA---ADDLEPGDVVRIENAYVRE--FNGRLELSVGKN 76 (82)
T ss_pred EEEEEEEccCCeEeccCCCeeEEEEEEEECCCCEEEEEEECchh---cccCCCCCEEEEEeEEEEe--cCCcEEEEeCCc
Confidence 3455665533322 333 67789999999999999998764 5668999999999 88864 568889887653
No 65
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=95.39 E-value=0.18 Score=60.86 Aligned_cols=77 Identities=12% Similarity=0.115 Sum_probs=67.7
Q ss_pred ceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeeccCCceEEEEcccccc
Q psy9396 986 SCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065 (1149)
Q Consensus 986 ~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~~~i~~l 1065 (1149)
.++|-|.|++++.. ++| -++++|-|...++.|++|...+.+..-.+++|.-|+|.|+|+.-..+|..|++++++.+.
T Consensus 19 ~v~V~GEisn~~~~--~sG-H~YFtLkD~~a~i~~vmf~~~~~~l~f~~~~G~~V~v~g~v~~y~~~G~~ql~v~~i~~~ 95 (432)
T TIGR00237 19 QVWIQGEISNFTQP--VSG-HWYFTLKDENAQVRCVMFRGNNNRLKFRPQNGQQVLVRGGISVYEPRGDYQIICFEMQPA 95 (432)
T ss_pred cEEEEEEecCCeeC--CCc-eEEEEEEcCCcEEEEEEEcChhhCCCCCCCCCCEEEEEEEEEEECCCCcEEEEEEEeccC
Confidence 78999999999854 557 588999999999999999998888887889999999999999755567799999999874
No 66
>COG1491 Predicted RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=95.34 E-value=0.02 Score=59.30 Aligned_cols=40 Identities=35% Similarity=0.491 Sum_probs=36.2
Q ss_pred EEe-cccccCCccHHHHHHHHHHHhcCCCCCHHHHHhhccc
Q psy9396 831 IRY-GLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDK 870 (1149)
Q Consensus 831 I~~-gl~~Ikgvg~~~~~~i~~~r~~g~f~~~~df~~r~~~ 870 (1149)
+|+ .|..++|||.+.+..|+++|+.+||+||+|+-+||+.
T Consensus 127 ~RLH~LELLpGiGkK~m~~ILeERkkkpFeSFeDi~~Rv~~ 167 (202)
T COG1491 127 LRLHQLELLPGIGKKTMWAILEERKKKPFESFEDIKERVKG 167 (202)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHhcCCCcCHHHHHHHhcC
Confidence 444 6889999999999999999998899999999999864
No 67
>PRK08486 single-stranded DNA-binding protein; Provisional
Probab=95.29 E-value=0.1 Score=55.39 Aligned_cols=81 Identities=15% Similarity=0.259 Sum_probs=57.8
Q ss_pred ceEEEEEEE-eeeEeeecCC-cEEEEEE-------------EeCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeec
Q psy9396 986 SCTVSGIIT-ELKLKTTYRG-KILIIVI-------------DDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDR 1050 (1149)
Q Consensus 986 ~v~v~G~I~-~vk~~~TK~G-~mafltl-------------eD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~ 1050 (1149)
.|.+.|-++ ....+.|.+| .++-++| .+.|..+.|++|.+.-+.+...|++|..|+|+|+++.+.
T Consensus 4 ~V~LvGrL~~DPElr~t~sG~~va~fslAv~r~~~~~~Ge~~e~t~fi~v~~fg~~AE~~~~~l~KG~~V~VeGrL~~~~ 83 (182)
T PRK08486 4 KVILVGNLTRDVELRYLPSGSAIATIGLATSRRFKKQDGEKGEEVCFIDIRLFGRTAEIANQYLSKGSKVLIEGRLTFES 83 (182)
T ss_pred EEEEEEEecCCCEEEECCCCCEEEEEEEEEecceecCCCCCcccceEEEEEEEhHHHHHHHHHcCCCCEEEEEEEEEeCc
Confidence 355666554 4455566667 5664444 135678999999998888889999999999999999754
Q ss_pred c---CC----ceEEEEccccccH
Q psy9396 1051 F---LK----NIRINAEKIFDIN 1066 (1149)
Q Consensus 1051 ~---~~----~~~ii~~~i~~l~ 1066 (1149)
+ +| ...|+|++|.-|.
T Consensus 84 y~dkdG~~r~~~eI~a~~v~~L~ 106 (182)
T PRK08486 84 WMDQNGQKRSKHTITAESMQMLD 106 (182)
T ss_pred EECCCCcEEEEEEEEEeEEEECC
Confidence 3 22 2467888887665
No 68
>PF04919 DUF655: Protein of unknown function (DUF655); InterPro: IPR007003 This family includes several uncharacterised archaeal proteins.; PDB: 2I5H_A.
Probab=95.25 E-value=0.019 Score=59.91 Aligned_cols=39 Identities=33% Similarity=0.499 Sum_probs=30.5
Q ss_pred EEe-cccccCCccHHHHHHHHHHHhcCCCCCHHHHHhhcc
Q psy9396 831 IRY-GLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRID 869 (1149)
Q Consensus 831 I~~-gl~~Ikgvg~~~~~~i~~~r~~g~f~~~~df~~r~~ 869 (1149)
+|+ .|.-++|+|.+...+|+++|+.+||+||+|+-+|+.
T Consensus 113 ~RlH~LeLLPGIGKK~m~~ILeERkkkpFeSFeDi~~Rv~ 152 (181)
T PF04919_consen 113 LRLHSLELLPGIGKKTMWKILEERKKKPFESFEDIEERVK 152 (181)
T ss_dssp SSSBGGGGSTT--HHHHHHHHHHHHHS---SHHHHHHHST
T ss_pred HHHHHHhhcccccHHHHHHHHHHHccCCCCCHHHHHHHhc
Confidence 344 688999999999999999999899999999999985
No 69
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=95.18 E-value=0.28 Score=59.61 Aligned_cols=79 Identities=25% Similarity=0.301 Sum_probs=60.4
Q ss_pred CCceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEc----hHHHHHHHhhccCCcEEEEEEEEEeec-cCCceEEE
Q psy9396 984 TYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIIN----NQLYEKNKNILKENELLIVSGKVLEDR-FLKNIRIN 1058 (1149)
Q Consensus 984 ~~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvF----p~~y~~~~~~l~~~~~v~v~G~v~~~~-~~~~~~ii 1058 (1149)
+..|+|+|.|.++|.. |+++|+.|.|.+|.+.+++. ++.|+..+ .|..+.+|.|+|.+.... ..+++.+.
T Consensus 16 ~~~V~i~G~v~~~R~~----g~~~Fi~lrD~~g~iq~~~~~~~~~~~~~~~~-~l~~~s~v~v~G~v~~~~~~~~~~el~ 90 (450)
T PRK03932 16 GQEVTVRGWVRTKRDS----GKIAFLQLRDGSCFKQLQVVKDNGEEYFEEIK-KLTTGSSVIVTGTVVESPRAGQGYELQ 90 (450)
T ss_pred CCEEEEEEEEEEEEeC----CCeEEEEEECCCCcEEEEEEcCCChHHHHHHh-cCCCCcEEEEEEEEEcCCCCCCCEEEE
Confidence 3489999999988853 46899999999999888776 34566554 488899999999999753 12467888
Q ss_pred EccccccHH
Q psy9396 1059 AEKIFDINV 1067 (1149)
Q Consensus 1059 ~~~i~~l~~ 1067 (1149)
++++.-+..
T Consensus 91 ~~~i~vl~~ 99 (450)
T PRK03932 91 ATKIEVIGE 99 (450)
T ss_pred EEEEEEccC
Confidence 887755543
No 70
>cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial
Probab=95.04 E-value=0.17 Score=46.34 Aligned_cols=73 Identities=23% Similarity=0.332 Sum_probs=53.1
Q ss_pred eEEEEEEEeeeEeeecCCcEEEEEEEeCCce--EEEEEchHH--HHHHHhhccCCcEEEEEEEEEeecc-CCceEEEEcc
Q psy9396 987 CTVSGIITELKLKTTYRGKILIIVIDDNSNS--VEVIINNQL--YEKNKNILKENELLIVSGKVLEDRF-LKNIRINAEK 1061 (1149)
Q Consensus 987 v~v~G~I~~vk~~~TK~G~mafltleD~tg~--ie~vvFp~~--y~~~~~~l~~~~~v~v~G~v~~~~~-~~~~~ii~~~ 1061 (1149)
+++.|.|.++|. .|+++|+.|.|.++. +.+++..+. |+.. ..+..+..|.|+|.+..... .++..+.+++
T Consensus 2 v~v~Gwv~~~R~----~g~~~Fi~LrD~s~~~~lQvv~~~~~~~~~~~-~~l~~gs~V~v~G~v~~~~~~~~~~El~~~~ 76 (82)
T cd04318 2 VTVNGWVRSVRD----SKKISFIELNDGSCLKNLQVVVDKELTNFKEI-LKLSTGSSIRVEGVLVKSPGAKQPFELQAEK 76 (82)
T ss_pred EEEEEeEEEEEc----CCcEEEEEEECCCCccCEEEEEeCcccCHHHH-hcCCCceEEEEEEEEEeCCCCCCCEEEEEEE
Confidence 678999987776 235899999999995 999887543 3333 35788999999999987531 1456666666
Q ss_pred ccc
Q psy9396 1062 IFD 1064 (1149)
Q Consensus 1062 i~~ 1064 (1149)
+.-
T Consensus 77 i~i 79 (82)
T cd04318 77 IEV 79 (82)
T ss_pred EEE
Confidence 543
No 71
>PRK07275 single-stranded DNA-binding protein; Provisional
Probab=95.03 E-value=0.12 Score=53.88 Aligned_cols=81 Identities=16% Similarity=0.246 Sum_probs=60.1
Q ss_pred ceEEEEEEE-eeeEeeecCC-cEEEEEEE-----------eCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeeccC
Q psy9396 986 SCTVSGIIT-ELKLKTTYRG-KILIIVID-----------DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFL 1052 (1149)
Q Consensus 986 ~v~v~G~I~-~vk~~~TK~G-~mafltle-----------D~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~~ 1052 (1149)
.|.+.|-++ ....+.|.+| .++-++|- ..+.-+.|++|-+.-+.+...+++|..|.|+|+++.+.+.
T Consensus 4 ~v~LiGrL~~DPElr~t~sG~~v~~ftlAv~r~~~~~~ge~~tdfi~vv~wgk~Ae~~~~~l~KG~~V~VeGrl~~r~y~ 83 (162)
T PRK07275 4 NVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTRNYE 83 (162)
T ss_pred EEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecCCCCEeeeEEEEEEEcHHHHHHHHHcCCCCEEEEEEEEEeceEE
Confidence 466777666 4566677778 67755552 2466889999999988899999999999999999976442
Q ss_pred ---C----ceEEEEccccccH
Q psy9396 1053 ---K----NIRINAEKIFDIN 1066 (1149)
Q Consensus 1053 ---~----~~~ii~~~i~~l~ 1066 (1149)
| ...++|+++.-|+
T Consensus 84 dkdG~k~~~~evva~~i~~l~ 104 (162)
T PRK07275 84 NQQGQRVYVTEVVADNFQMLE 104 (162)
T ss_pred CCCCCEEEEEEEEEeEEEECC
Confidence 2 2357777776664
No 72
>PRK06751 single-stranded DNA-binding protein; Provisional
Probab=94.95 E-value=0.13 Score=54.18 Aligned_cols=81 Identities=19% Similarity=0.254 Sum_probs=59.3
Q ss_pred ceEEEEEEEe-eeEeeecCC-cEEEEEEE-----------eCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeeccC
Q psy9396 986 SCTVSGIITE-LKLKTTYRG-KILIIVID-----------DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFL 1052 (1149)
Q Consensus 986 ~v~v~G~I~~-vk~~~TK~G-~mafltle-----------D~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~~ 1052 (1149)
.+.+.|-|.. ...+.|.+| .++-++|- ..+..+.|++|-+.-+.+...|++|..|.|+|+++.+.+.
T Consensus 4 ~V~LiGrL~~DpelR~t~sG~~v~~fslAvnr~~~~~~ge~~tdwi~~v~wgk~Ae~~~~~l~KG~~V~VeGrL~~r~ye 83 (173)
T PRK06751 4 RVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTRNYE 83 (173)
T ss_pred EEEEEEEECCCCcEEECCCCCEEEEEEEEEccceecCCCCEEEEEEEEEEeCcHHHHHHHHcCCCCEEEEEEEEEeCccC
Confidence 4567776663 555667777 66655542 2345899999999988899999999999999999986554
Q ss_pred ---C----ceEEEEccccccH
Q psy9396 1053 ---K----NIRINAEKIFDIN 1066 (1149)
Q Consensus 1053 ---~----~~~ii~~~i~~l~ 1066 (1149)
| ...++|+.|.-|+
T Consensus 84 dkdG~~~~~~eVva~~i~~l~ 104 (173)
T PRK06751 84 GQDGKRVYVTEVLAESVQFLE 104 (173)
T ss_pred CCCCcEEEEEEEEEEEEEeCc
Confidence 2 3457777776664
No 73
>PRK07459 single-stranded DNA-binding protein; Provisional
Probab=94.94 E-value=0.18 Score=49.98 Aligned_cols=81 Identities=15% Similarity=0.197 Sum_probs=62.0
Q ss_pred ceEEEEEEEe-eeEeeecCC-cEEEEEEE-------eCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeecc---C-
Q psy9396 986 SCTVSGIITE-LKLKTTYRG-KILIIVID-------DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRF---L- 1052 (1149)
Q Consensus 986 ~v~v~G~I~~-vk~~~TK~G-~mafltle-------D~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~---~- 1052 (1149)
.+.+.|-+.. ...+.|.+| .++-++|- +.+.-++|++|-+.-+.....|++|..|.|+|+++.+.+ +
T Consensus 5 ~v~LiGrL~~DPelr~t~~G~~v~~fslAv~~~~~~~~t~w~~v~~wg~~Ae~~~~~l~KG~~V~V~G~l~~~~~~d~d~ 84 (121)
T PRK07459 5 SVTLVGRAGRDPEVRYFESGSVVCNLTLAVNRRSRDDEPDWFNLEIWGKTAQVAADYVKKGSLIGITGSLKFDRWTDRNT 84 (121)
T ss_pred EEEEEEEccCCCEEEEcCCCCEEEEEEEEecccccCCCceEEEEEEehHHHHHHHHHcCCCCEEEEEEEEEecceEcCCC
Confidence 5678887775 455677888 67765554 457789999999988889999999999999999997633 2
Q ss_pred C----ceEEEEccccccH
Q psy9396 1053 K----NIRINAEKIFDIN 1066 (1149)
Q Consensus 1053 ~----~~~ii~~~i~~l~ 1066 (1149)
| ...++|++|.-|+
T Consensus 85 G~~r~~~ei~a~~i~~L~ 102 (121)
T PRK07459 85 GEDRSKPVIRVDRLELLG 102 (121)
T ss_pred CeEEEEEEEEEeEEEECc
Confidence 2 2357888887765
No 74
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=94.61 E-value=0.19 Score=61.66 Aligned_cols=78 Identities=17% Similarity=0.376 Sum_probs=60.8
Q ss_pred CceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEch-----HHHHHHHhhccCCcEEEEEEEEEeeccCCceEEEE
Q psy9396 985 YSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINN-----QLYEKNKNILKENELLIVSGKVLEDRFLKNIRINA 1059 (1149)
Q Consensus 985 ~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp-----~~y~~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~ 1059 (1149)
..|+|+|.|.++|. .|+++|++|.|.+|.+.+++-. +.++.....+..|.+|-|+|.+.... .+.+.+.+
T Consensus 54 ~~v~v~Grv~~~R~----~gk~~F~~l~D~~g~iQ~~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~-~gelel~~ 128 (496)
T TIGR00499 54 IEVSIAGRIMARRS----MGKATFITLQDESGQIQLYVNKDDLPEDFYEFDEYLLDLGDIIGVTGYPFKTK-TGELSVHV 128 (496)
T ss_pred CEEEEEEEEEEEec----CCCeEEEEEEcCCccEEEEEECCcCcHHHHHHHHhcCCCCCEEEEEEEEEECC-CCcEEEEe
Confidence 37999999998872 3468999999999999998863 23444455688999999999998753 56688888
Q ss_pred ccccccHH
Q psy9396 1060 EKIFDINV 1067 (1149)
Q Consensus 1060 ~~i~~l~~ 1067 (1149)
+++.-+..
T Consensus 129 ~~i~ilsk 136 (496)
T TIGR00499 129 TELQILTK 136 (496)
T ss_pred eEEEEEec
Confidence 87766554
No 75
>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS. These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh
Probab=94.53 E-value=0.18 Score=50.85 Aligned_cols=80 Identities=21% Similarity=0.317 Sum_probs=58.7
Q ss_pred CCceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchHH---HHHHHhhccCCcEEEEEEEEEeec--------cC
Q psy9396 984 TYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQL---YEKNKNILKENELLIVSGKVLEDR--------FL 1052 (1149)
Q Consensus 984 ~~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~~---y~~~~~~l~~~~~v~v~G~v~~~~--------~~ 1052 (1149)
+..+++.|+|.++|.. |+++|+.|.|.+|.+.+++..+. ++.. ..+..+.+|.|+|.+.... ..
T Consensus 14 g~~V~i~Gwv~~~R~~----gk~~Fi~LrD~~g~~Q~v~~~~~~~~~~~~-~~l~~gs~V~V~G~~~~~~~~~~~~~~~~ 88 (135)
T cd04317 14 GQEVTLCGWVQRRRDH----GGLIFIDLRDRYGIVQVVFDPEEAPEFELA-EKLRNESVIQVTGKVRARPEGTVNPKLPT 88 (135)
T ss_pred CCEEEEEEeEehhccc----CCEEEEEEecCCeeEEEEEeCCchhHHHHH-hCCCCccEEEEEEEEECCCccccCCCCCC
Confidence 3489999999887663 34899999999999999886542 3322 3588899999999998632 12
Q ss_pred CceEEEEccccccHHH
Q psy9396 1053 KNIRINAEKIFDINVA 1068 (1149)
Q Consensus 1053 ~~~~ii~~~i~~l~~~ 1068 (1149)
+.+.+.++++..+..+
T Consensus 89 ~~~El~~~~i~vl~~~ 104 (135)
T cd04317 89 GEIEVVASELEVLNKA 104 (135)
T ss_pred CcEEEEEeEEEEEECC
Confidence 4577777777666543
No 76
>TIGR00426 competence protein ComEA helix-hairpin-helix repeat region. Members of the subfamily recognized by this model include competence protein ComEA and closely related proteins from a number of species that exhibit competence for transformation by exongenous DNA, including Streptococcus pneumoniae, Bacillus subtilis, Neisseria meningitidis, and Haemophilus influenzae. This model represents a region of two tandem copies of a helix-hairpin-helix domain (pfam00633), each about 30 residues in length. Limited sequence similarity can be found among some members of this family N-terminal to the region covered by this model.
Probab=94.53 E-value=0.062 Score=47.71 Aligned_cols=47 Identities=26% Similarity=0.423 Sum_probs=40.1
Q ss_pred cccc-cCCccHHHHHHHHHHHh-cCCCCCHHHHHhhcccCCCCHHHHHHHHH
Q psy9396 834 GLGA-IKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLIN 883 (1149)
Q Consensus 834 gl~~-Ikgvg~~~~~~i~~~r~-~g~f~~~~df~~r~~~~~~~~~~le~Li~ 883 (1149)
-|.. ++|+|...+++|++.|. .|+|+|+.||.+- ..++++..+.+..
T Consensus 17 ~L~~~ipgig~~~a~~Il~~R~~~g~~~s~~dL~~v---~gi~~~~~~~i~~ 65 (69)
T TIGR00426 17 ELQRAMNGVGLKKAEAIVSYREEYGPFKTVEDLKQV---PGIGNSLVEKNLA 65 (69)
T ss_pred HHHhHCCCCCHHHHHHHHHHHHHcCCcCCHHHHHcC---CCCCHHHHHHHHh
Confidence 4667 99999999999999998 7899999999654 5688888887754
No 77
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=94.15 E-value=0.2 Score=61.31 Aligned_cols=77 Identities=16% Similarity=0.324 Sum_probs=61.7
Q ss_pred CceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEch-----HHHHHHHhhccCCcEEEEEEEEEeeccCCceEEEE
Q psy9396 985 YSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINN-----QLYEKNKNILKENELLIVSGKVLEDRFLKNIRINA 1059 (1149)
Q Consensus 985 ~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp-----~~y~~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~ 1059 (1149)
..|+|+|.|.++|.. |+++|++|.|.+|.+.+++-. +.|+.+.. |..|.+|.|+|.|.... .+++.+.+
T Consensus 55 ~~v~v~G~v~~~R~~----g~~~Fi~lrD~~g~iQ~v~~~~~~~~~~~~~~~~-l~~g~~v~v~G~v~~t~-~ge~el~~ 128 (491)
T PRK00484 55 IEVSVAGRVMLKRVM----GKASFATLQDGSGRIQLYVSKDDVGEEALEAFKK-LDLGDIIGVEGTLFKTK-TGELSVKA 128 (491)
T ss_pred cEEEEEEEEEEEecC----CceEEEEEEcCCccEEEEEECCcCCHHHHHHHhc-CCCCCEEEEEEEEEEcC-CCcEEEEE
Confidence 368999999988753 458999999999999998863 34666655 88999999999999764 57788888
Q ss_pred ccccccHH
Q psy9396 1060 EKIFDINV 1067 (1149)
Q Consensus 1060 ~~i~~l~~ 1067 (1149)
+++.-+..
T Consensus 129 ~~~~vls~ 136 (491)
T PRK00484 129 TELTLLTK 136 (491)
T ss_pred eEEEEEec
Confidence 87766543
No 78
>COG4085 Predicted RNA-binding protein, contains TRAM domain [General function prediction only]
Probab=93.97 E-value=0.29 Score=51.39 Aligned_cols=78 Identities=22% Similarity=0.290 Sum_probs=62.1
Q ss_pred ceEEEEEEEeeeEeeecCC-cEEEEEEEeCCceEEEEEchHHHHHHH-----hhccCCcEEEEEEEEEeeccCCceEEEE
Q psy9396 986 SCTVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNK-----NILKENELLIVSGKVLEDRFLKNIRINA 1059 (1149)
Q Consensus 986 ~v~v~G~I~~vk~~~TK~G-~mafltleD~tg~ie~vvFp~~y~~~~-----~~l~~~~~v~v~G~v~~~~~~~~~~ii~ 1059 (1149)
.+.+=|.|.+.+. .-| ..-++.+.|+||.++++.|++.-+-.. ..+.+|.++-|.|+|+. ++|..++.+
T Consensus 53 ~v~vkg~V~~~~n---~~~~gi~~l~lndgtGti~vva~~~tee~l~~n~~~p~~~eGe~veVtGrv~~--yrG~~eVkv 127 (204)
T COG4085 53 EVTVKGEVTADQN---AIGGGIESLVLNDGTGTITVVASRSTEETLELNEGMPVTVEGEIVEVTGRVEE--YRGSSEVKV 127 (204)
T ss_pred cceeeeEEEeeec---ccccceEEEEEECCCCcEEEEEecChhHhHhhcCCCCccccCcEEEEEEEEEE--eCCCceeec
Confidence 6778899988876 223 577999999999999999998755433 46678999999999985 678999999
Q ss_pred ccccccHHH
Q psy9396 1060 EKIFDINVA 1068 (1149)
Q Consensus 1060 ~~i~~l~~~ 1068 (1149)
+...++-.+
T Consensus 128 nq~~d~~~l 136 (204)
T COG4085 128 NQPNDSRPL 136 (204)
T ss_pred cCccccccc
Confidence 887666443
No 79
>PRK06293 single-stranded DNA-binding protein; Provisional
Probab=93.96 E-value=0.44 Score=49.55 Aligned_cols=81 Identities=16% Similarity=0.269 Sum_probs=60.7
Q ss_pred ceEEEEEEE-eeeEeeecCC-cEEEEEEE--------eCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeeccC---
Q psy9396 986 SCTVSGIIT-ELKLKTTYRG-KILIIVID--------DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFL--- 1052 (1149)
Q Consensus 986 ~v~v~G~I~-~vk~~~TK~G-~mafltle--------D~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~~--- 1052 (1149)
.|.++|-+. ....+.|.+| .++-++|- +.|..+.|++|.+.-+.....|++|..|.|+|+++.+.+.
T Consensus 3 ~V~LiGrLg~DPElR~t~sG~~v~~FsLAvn~~~~~~~~T~wi~v~awg~~Ae~v~~yL~KG~~V~VeGrL~~~~y~dkd 82 (161)
T PRK06293 3 FGYIVGRLGADPEERMTSKGKRVVVLRLGVKSRVGSKDETVWCRCNIWGNRYDKMLPYLKKGSGVIVAGEMSPESYVDKD 82 (161)
T ss_pred EEEEEEEecCCCeEEEcCCCCEEEEEEEEEeCCCCCccceEEEEEEEEhHHHHHHHHhCCCCCEEEEEEEEEeCccCCCC
Confidence 466777776 4566677888 66655543 3577899999999888899999999999999999976442
Q ss_pred C----ceEEEEccccccH
Q psy9396 1053 K----NIRINAEKIFDIN 1066 (1149)
Q Consensus 1053 ~----~~~ii~~~i~~l~ 1066 (1149)
| .+.|+|++|.-+.
T Consensus 83 G~kr~~~eIva~~I~fl~ 100 (161)
T PRK06293 83 GSPQSSLVVSVDTIKFSP 100 (161)
T ss_pred CCEEEEEEEEEeEEEECc
Confidence 2 2457888776664
No 80
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=93.83 E-value=0.3 Score=59.98 Aligned_cols=78 Identities=12% Similarity=0.296 Sum_probs=60.9
Q ss_pred ceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEch-----HHHHHHHhhccCCcEEEEEEEEEeeccCCceEEEEc
Q psy9396 986 SCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINN-----QLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAE 1060 (1149)
Q Consensus 986 ~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp-----~~y~~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~~ 1060 (1149)
.|+|+|.|.++|.. |+.+|++|.|.+|.+.+++-. +.|...-..+..|.+|-|+|.+.... .+++.+.++
T Consensus 67 ~v~v~Grv~~~R~~----Gk~~F~~lrD~~g~iQ~~~~~~~~~~~~~~~~~~~l~~Gd~V~v~G~~~~t~-~gelel~~~ 141 (505)
T PRK12445 67 EVSVAGRMMTRRIM----GKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQ-TGELSIHCT 141 (505)
T ss_pred EEEEEEEEEEEecC----CCcEEEEEEeCCccEEEEEECCccchhhHHHHHhcCCCCCEEEEEEEEEecC-CCcEEEEEe
Confidence 69999999988764 458999999999999998852 23543334588899999999998754 578888888
Q ss_pred cccccHHH
Q psy9396 1061 KIFDINVA 1068 (1149)
Q Consensus 1061 ~i~~l~~~ 1068 (1149)
++.-+...
T Consensus 142 ~~~llsk~ 149 (505)
T PRK12445 142 ELRLLTKA 149 (505)
T ss_pred EEEEEecC
Confidence 77666543
No 81
>PLN02502 lysyl-tRNA synthetase
Probab=93.76 E-value=0.36 Score=59.83 Aligned_cols=79 Identities=15% Similarity=0.267 Sum_probs=63.4
Q ss_pred CceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchH-------HHHHHHhhccCCcEEEEEEEEEeeccCCceEE
Q psy9396 985 YSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQ-------LYEKNKNILKENELLIVSGKVLEDRFLKNIRI 1057 (1149)
Q Consensus 985 ~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~-------~y~~~~~~l~~~~~v~v~G~v~~~~~~~~~~i 1057 (1149)
..|+|+|.|.++|.. |+++|++|.|.+|.+.+++-.+ .|..+...+..|.+|-|+|.+.... .+++.+
T Consensus 109 ~~V~v~GrV~~~R~~----Gk~~F~~LrD~~g~iQv~~~~~~~~~~~~~~~~~~~~l~~gdiV~V~G~~~~t~-~gelel 183 (553)
T PLN02502 109 VSVSVAGRIMAKRAF----GKLAFYDLRDDGGKIQLYADKKRLDLDEEEFEKLHSLVDRGDIVGVTGTPGKTK-KGELSI 183 (553)
T ss_pred CEEEEEEEEEEEecC----CCeEEEEEecCCccEEEEEECccccchhHHHHHHHhCCCCCcEEEEEEEEEecC-CCCEEE
Confidence 479999999988764 4589999999999999988532 3666666789999999999998764 578888
Q ss_pred EEccccccHHH
Q psy9396 1058 NAEKIFDINVA 1068 (1149)
Q Consensus 1058 i~~~i~~l~~~ 1068 (1149)
.++++.-|...
T Consensus 184 ~~~~i~vLs~~ 194 (553)
T PLN02502 184 FPTSFEVLTKC 194 (553)
T ss_pred EEeEEEEEecc
Confidence 88887666543
No 82
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=93.74 E-value=0.42 Score=50.69 Aligned_cols=82 Identities=13% Similarity=0.187 Sum_probs=61.3
Q ss_pred ceEEEEEEEe-eeEeeecCC-cEEEEEEE--------------eCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEee
Q psy9396 986 SCTVSGIITE-LKLKTTYRG-KILIIVID--------------DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLED 1049 (1149)
Q Consensus 986 ~v~v~G~I~~-vk~~~TK~G-~mafltle--------------D~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~ 1049 (1149)
.|+++|-|.+ ...+.|++| .++-++|. +.|..+.|++|.+.-+.+...|++|..|.|+|+++.+
T Consensus 6 ~V~LiGrLg~DPElr~t~nG~~va~fsVAv~~~~kdk~sGe~~e~T~w~~V~~fGk~AE~v~~~LkKGs~V~VeGrL~~~ 85 (182)
T PRK06958 6 KVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKASGEFKEATEWHRVAFFGRLAEIVGEYLKKGSSVYIEGRIRTR 85 (182)
T ss_pred EEEEEEEecCCCeEEEcCCCCEEEEEEEEeccccccccCCcccccceEEEEEEehHHHHHHHHHhCCCCEEEEEEEEEeC
Confidence 5778887775 466677788 66644442 2356889999999888899999999999999999976
Q ss_pred ccC---C----ceEEEEccccccHH
Q psy9396 1050 RFL---K----NIRINAEKIFDINV 1067 (1149)
Q Consensus 1050 ~~~---~----~~~ii~~~i~~l~~ 1067 (1149)
.+. + .+.|+|++|..|..
T Consensus 86 ~yeDkdG~kr~~~eVvA~~V~fL~s 110 (182)
T PRK06958 86 KWQGQDGQDRYSTEIVADQMQMLGG 110 (182)
T ss_pred ceECCCCcEEEEEEEEEeEEEECCC
Confidence 442 2 24688888877753
No 83
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=93.70 E-value=0.51 Score=59.14 Aligned_cols=77 Identities=19% Similarity=0.295 Sum_probs=62.4
Q ss_pred ceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchH------HHHHHHhhccCCcEEEEEEEEEeeccCCceEEEE
Q psy9396 986 SCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQ------LYEKNKNILKENELLIVSGKVLEDRFLKNIRINA 1059 (1149)
Q Consensus 986 ~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~------~y~~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~ 1059 (1149)
.|+|+|.|.++|.. |+++|+.|.|.+|.+.+++..+ .|......+..|.+|-|+|.|.+.. .|++.+.+
T Consensus 109 ~V~vaGrV~~~R~~----Gk~~F~~LrD~~G~IQvv~~~~~~~~~~~~~~~~~~l~~gdiV~V~G~v~~t~-~GeleI~~ 183 (659)
T PTZ00385 109 TVRVAGRVTSVRDI----GKIIFVTIRSNGNELQVVGQVGEHFTREDLKKLKVSLRVGDIIGADGVPCRMQ-RGELSVAA 183 (659)
T ss_pred EEEEEEEEEeeecc----CCeEEEEEEECCceEEEEEECCccCCHHHHHHHHhCCCCCCEEEEEEEEEecC-CceEEEEe
Confidence 69999999887653 4589999999999999999632 3555555688999999999998753 68899998
Q ss_pred ccccccHH
Q psy9396 1060 EKIFDINV 1067 (1149)
Q Consensus 1060 ~~i~~l~~ 1067 (1149)
+++.-|..
T Consensus 184 ~~i~lLsk 191 (659)
T PTZ00385 184 SRMLILSP 191 (659)
T ss_pred eEEEEech
Confidence 88877665
No 84
>PRK06752 single-stranded DNA-binding protein; Validated
Probab=93.48 E-value=0.61 Score=45.59 Aligned_cols=81 Identities=14% Similarity=0.183 Sum_probs=57.6
Q ss_pred ceEEEEEEE-eeeEeeecCC-cEEEEEEEe-----------CCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeeccC
Q psy9396 986 SCTVSGIIT-ELKLKTTYRG-KILIIVIDD-----------NSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFL 1052 (1149)
Q Consensus 986 ~v~v~G~I~-~vk~~~TK~G-~mafltleD-----------~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~~ 1052 (1149)
.+.+.|.+. +...+.|++| .++-++|.- .+.-+.|++|-+.-+.+...+++|..|.|+|+++.+.+.
T Consensus 4 ~v~liGrl~~dPelr~t~~G~~~~~f~lAv~~~~~~~~g~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~l~~~~~~ 83 (112)
T PRK06752 4 RVVLIGRLTKEPELYYTKQGVAYARVCVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCTKGSLVGITGRIHTRNYE 83 (112)
T ss_pred EEEEEEECcCCCEEEECCCCCEEEEEEEEECCCeEcCCCCEEEEEEEEEEehHHHHHHHHhcCCCCEEEEEEEEEeCccC
Confidence 356667666 3455567777 566444432 256788999999888889999999999999999976432
Q ss_pred ---C----ceEEEEccccccH
Q psy9396 1053 ---K----NIRINAEKIFDIN 1066 (1149)
Q Consensus 1053 ---~----~~~ii~~~i~~l~ 1066 (1149)
| ...++++++.-|+
T Consensus 84 ~~~G~~~~~~ei~a~~i~~l~ 104 (112)
T PRK06752 84 DDQGKRIYITEVVIESITFLE 104 (112)
T ss_pred CCCCcEEEEEEEEEEEEEECC
Confidence 2 2357888776664
No 85
>PRK08402 replication factor A; Reviewed
Probab=93.17 E-value=0.39 Score=56.28 Aligned_cols=84 Identities=15% Similarity=0.262 Sum_probs=62.6
Q ss_pred ccccccCCCC-ceEEEEEEEee---eEeeecCC---cEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEE-EEEE
Q psy9396 976 IYLSELKPTY-SCTVSGIITEL---KLKTTYRG---KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVS-GKVL 1047 (1149)
Q Consensus 976 ~~i~~l~~~~-~v~v~G~I~~v---k~~~TK~G---~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~-G~v~ 1047 (1149)
..|.||.++. .|.+.|.|+++ |...++.| +..-++|.|+||.+.+++|.+....+-..+.+|.+|.|. ++|.
T Consensus 63 ~kI~dl~~g~~~V~v~~rVl~~~~~r~f~rrdG~~~~V~~i~l~DeTG~ir~TlW~~~a~~~~~~l~~Gdvi~I~~a~V~ 142 (355)
T PRK08402 63 MHISDLVPGMRGVNIVGRVLRKYPPREYTKKDGSTGRVASLIIYDDTGRARVVLWDAKVAKYYNKINVGDVIKVIDAQVR 142 (355)
T ss_pred cCHHHccCCCceeeEEEEEEEccCCceeeccCCCcceEEEEEEEcCCCeEEEEEechhhhhhcccCCCCCEEEEECCEEe
Confidence 4678888764 78899999987 44455666 355699999999999999998876655568899999986 6665
Q ss_pred eeccCCceEEEEc
Q psy9396 1048 EDRFLKNIRINAE 1060 (1149)
Q Consensus 1048 ~~~~~~~~~ii~~ 1060 (1149)
+.++|.+++.+.
T Consensus 143 -e~~~G~~eLsvg 154 (355)
T PRK08402 143 -ESLSGLPELHIN 154 (355)
T ss_pred -ecCCCcEEEEEC
Confidence 334566566554
No 86
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=93.17 E-value=0.51 Score=56.98 Aligned_cols=79 Identities=19% Similarity=0.252 Sum_probs=59.8
Q ss_pred CCceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEch-----HHHHHHHhhccCCcEEEEEEEEEeecc-CCceEE
Q psy9396 984 TYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINN-----QLYEKNKNILKENELLIVSGKVLEDRF-LKNIRI 1057 (1149)
Q Consensus 984 ~~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp-----~~y~~~~~~l~~~~~v~v~G~v~~~~~-~~~~~i 1057 (1149)
++.++|.|.|.++|. .|+++|++|.|.+|.+.+++.. +.|+.. ..|..+.+|.|.|.|..+.. .+++.+
T Consensus 12 g~~v~i~G~v~~~R~----~g~~~Fi~lrd~~g~iQ~v~~~~~~~~~~~~~~-~~l~~~s~v~v~G~v~~~~~~~~~~el 86 (428)
T TIGR00458 12 GQEVTFMGWVHEIRD----LGGLIFVLLRDREGLIQITAPAKKVSKNLFKWA-KKLNLESVVAVRGIVKIKEKAPGGFEI 86 (428)
T ss_pred CCEEEEEEEEEEEec----CCCcEEEEEEeCCeeEEEEEECCcCCHHHHHHH-hCCCCCcEEEEEEEEEecCCCCCcEEE
Confidence 348999999987765 2458999999999999998863 345544 45888999999999987532 356778
Q ss_pred EEccccccHH
Q psy9396 1058 NAEKIFDINV 1067 (1149)
Q Consensus 1058 i~~~i~~l~~ 1067 (1149)
.++++.-+..
T Consensus 87 ~~~~i~vl~~ 96 (428)
T TIGR00458 87 IPTKIEVINE 96 (428)
T ss_pred EEeEEEEEec
Confidence 8877765554
No 87
>PRK08763 single-stranded DNA-binding protein; Provisional
Probab=93.16 E-value=0.63 Score=48.65 Aligned_cols=81 Identities=20% Similarity=0.235 Sum_probs=58.6
Q ss_pred ceEEEEEEEe-eeEeeecCC-cEEEEEEE------e-------CCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeec
Q psy9396 986 SCTVSGIITE-LKLKTTYRG-KILIIVID------D-------NSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDR 1050 (1149)
Q Consensus 986 ~v~v~G~I~~-vk~~~TK~G-~mafltle------D-------~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~ 1050 (1149)
.+.++|-+.+ ...+.|.+| .++.++|. | .+..+.|++|.+.-+...+.|++|..|+|+|+++.+.
T Consensus 7 kv~LiGrLg~DPelr~t~~G~~va~fsVA~~~~~k~~~G~~~e~t~w~~Vv~fgk~Ae~v~~~L~KGs~V~VeGrL~~~~ 86 (164)
T PRK08763 7 KVILVGNLGNDPDIKYTQSGMTITRISLATTSVRKDREGNTQERTEWHRVKFFGKLGEIAGEYLRKGSQCYIEGSIRYDK 86 (164)
T ss_pred EEEEEEEecCCCeEEEcCCCCeEEEEEEEeccceecCCCCeeccceEEEEEEehHHHHHHHHhcCCCCEEEEEEEEEece
Confidence 5677777765 355567777 66655543 1 2345899999988788889999999999999999764
Q ss_pred cC---C----ceEEEEccccccH
Q psy9396 1051 FL---K----NIRINAEKIFDIN 1066 (1149)
Q Consensus 1051 ~~---~----~~~ii~~~i~~l~ 1066 (1149)
+. | ...|++++|.-|.
T Consensus 87 y~dkdG~kr~~~eIva~~i~~L~ 109 (164)
T PRK08763 87 FTGQDGQERYVTEIVADEMQMLG 109 (164)
T ss_pred eECCCCCEEEEEEEEEeEEEECC
Confidence 42 2 2457888777665
No 88
>TIGR01259 comE comEA protein. This model describes the ComEA protein in bacteria. The com E locus is obligatory for bacterial cell competence - the process of internalizing the exogenous added DNA. Lesions in the loci has been variously described for the appearance of competence-related pheonotypes and impairment of competence, suggesting their intimate functional role in bacterial transformation.
Probab=93.13 E-value=0.13 Score=50.99 Aligned_cols=46 Identities=30% Similarity=0.417 Sum_probs=38.9
Q ss_pred cccccCCccHHHHHHHHHHHh-cCCCCCHHHHHhhcccCCCCHHHHHHHH
Q psy9396 834 GLGAIKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLI 882 (1149)
Q Consensus 834 gl~~Ikgvg~~~~~~i~~~r~-~g~f~~~~df~~r~~~~~~~~~~le~Li 882 (1149)
-|..|+|||+..|++|++.|+ +|+|.|++|+.+- ..++.+.++.|-
T Consensus 69 eL~~lpGIG~~~A~~Ii~~R~~~g~f~s~eeL~~V---~GIg~k~~~~i~ 115 (120)
T TIGR01259 69 ELQALPGIGPAKAKAIIEYREENGAFKSVDDLTKV---SGIGEKSLEKLK 115 (120)
T ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCcCCHHHHHcC---CCCCHHHHHHHH
Confidence 678899999999999999998 8999999999543 457777777663
No 89
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=93.03 E-value=0.92 Score=56.26 Aligned_cols=87 Identities=17% Similarity=0.252 Sum_probs=61.7
Q ss_pred ccccccCC----CCceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEc-----hHHHHHHHhhccCCcEEEEEEEE
Q psy9396 976 IYLSELKP----TYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIIN-----NQLYEKNKNILKENELLIVSGKV 1046 (1149)
Q Consensus 976 ~~i~~l~~----~~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvF-----p~~y~~~~~~l~~~~~v~v~G~v 1046 (1149)
+.+.+|.. +..|+|.|.|.++|.. |+++|++|.|.+|.+.+++- ++..-++-..|..+.+|.|+|+|
T Consensus 66 ~~i~~l~~~~~~g~~V~v~Grv~~~R~~----Gk~~Fl~LRd~~~~iQ~v~~~~~~~~~~~~~~~~~l~~esiV~V~G~v 141 (550)
T PTZ00401 66 IPVAVLSKPELVDKTVLIRARVSTTRKK----GKMAFMVLRDGSDSVQAMAAVEGDVPKEMIDFIGQIPTESIVDVEATV 141 (550)
T ss_pred EEHHHCCccccCCCEEEEEEEEEEEecC----CCeEEEEEEeCCcCEEEEEECCCccCHHHHHHHhcCCCCCEEEEEEEE
Confidence 34455532 3479999999877763 45899999999999999983 34444455668899999999999
Q ss_pred Eeec------cCCceEEEEccccccH
Q psy9396 1047 LEDR------FLKNIRINAEKIFDIN 1066 (1149)
Q Consensus 1047 ~~~~------~~~~~~ii~~~i~~l~ 1066 (1149)
.... ..+++.+.++++.-+.
T Consensus 142 ~~~~~~~~~~~~~~~El~v~~i~vls 167 (550)
T PTZ00401 142 CKVEQPITSTSHSDIELKVKKIHTVT 167 (550)
T ss_pred EecCccCCCCCCccEEEEeeEEEEEe
Confidence 8631 1245677777764443
No 90
>PF10451 Stn1: Telomere regulation protein Stn1; InterPro: IPR018856 The budding yeast protein Stn1 is a DNA-binding protein which has specificity for telomeric DNA. Structural profiling has predicted an OB-fold []. This entry represents the N-terminal part of the molecule, which adopts the OB fold. Protection of telomeres by multiple proteins with OB-fold domains is conserved in eukaryotic evolution [].; PDB: 3KF6_A 3KF8_A.
Probab=93.02 E-value=0.5 Score=52.89 Aligned_cols=75 Identities=21% Similarity=0.304 Sum_probs=54.7
Q ss_pred ceEEEEEEEeeeEeeecCCcEEEEEEEeCCc--eEEEEEchHHHHHHH---hhccCCcEEEEEEEEEeeccCCceEEEEc
Q psy9396 986 SCTVSGIITELKLKTTYRGKILIIVIDDNSN--SVEVIINNQLYEKNK---NILKENELLIVSGKVLEDRFLKNIRINAE 1060 (1149)
Q Consensus 986 ~v~v~G~I~~vk~~~TK~G~mafltleD~tg--~ie~vvFp~~y~~~~---~~l~~~~~v~v~G~v~~~~~~~~~~ii~~ 1060 (1149)
.++|+|.|++++.+.-++....+++++|.|| .++++++-+.+.... ..+ .|.+|-|+|.+.+ +..++.++
T Consensus 68 ~v~i~G~Vv~~~~~~~~~~~~~~l~iDD~Sg~~~i~~~~~~~~~~~~~l~~~~~-~G~~V~VkG~vsr----~~~ql~ve 142 (256)
T PF10451_consen 68 WVRIVGVVVGIDYKWIENEDRIILTIDDSSGANTIECKCSKSSYLSMGLPINDL-IGKVVEVKGTVSR----NERQLDVE 142 (256)
T ss_dssp EEEEEEEEEEEEEEE-BBTCEEEEEEE-SSCS-EEEEEEEHHHHHCCCHHCTT--TT-EEEEEEEEES----SSEEEEEE
T ss_pred EEEEEEEEEEEEEEeecccceEEEEEeCCCCceeEEEEEEcccccccCCCccCC-CCcEEEEEEEEcc----CcEEEEEE
Confidence 6899999999986644444789999999999 899999987665432 122 7999999999982 45667777
Q ss_pred ccccc
Q psy9396 1061 KIFDI 1065 (1149)
Q Consensus 1061 ~i~~l 1065 (1149)
.+..+
T Consensus 143 ~i~~~ 147 (256)
T PF10451_consen 143 RIELV 147 (256)
T ss_dssp EEEEE
T ss_pred EEEcc
Confidence 66544
No 91
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B.
Probab=92.88 E-value=0.073 Score=45.37 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhcCCCEEEecCccccC
Q psy9396 182 QIQQFINIASNINLPIVATHPIQFLK 207 (1149)
Q Consensus 182 ~n~~l~~lA~~~~iplVatnDvhyl~ 207 (1149)
.|+++.++|+++++|+++++|+|++.
T Consensus 3 ~N~~A~~~A~~~~lp~~~gSDAH~~~ 28 (56)
T PF13263_consen 3 ANRRAAELAEKYGLPFTGGSDAHFLE 28 (56)
T ss_dssp ---HHHHHHHHTT--EEEE--BSSGG
T ss_pred HHHHHHHHHHHcCCCeEeEEcccChh
Confidence 47889999999999999999999764
No 92
>PRK07211 replication factor A; Reviewed
Probab=92.83 E-value=0.63 Score=56.38 Aligned_cols=86 Identities=12% Similarity=0.276 Sum_probs=66.7
Q ss_pred ccccccCCCC-ceEEEEEEEee---eEeeec--C--CcEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEE
Q psy9396 976 IYLSELKPTY-SCTVSGIITEL---KLKTTY--R--GKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVL 1047 (1149)
Q Consensus 976 ~~i~~l~~~~-~v~v~G~I~~v---k~~~TK--~--G~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~ 1047 (1149)
.+|++|.++. .+.|.|.|+++ |...++ + |+++-+.|-|+||++.+++|.+.-.++...|++|.+|.|+|++.
T Consensus 54 ~~I~dL~pg~~~vtI~aRV~~~~~~Rt~~~~~~~~eGkv~~v~l~DeTG~Ir~TlW~d~ad~~~~~Le~GdV~~I~~~~~ 133 (485)
T PRK07211 54 NGIADIEPGMDEVKFLAKVLSIGDLRTFERDGEDEDGRVINVEVADETGSVRVAFWDEQAVAAEEELEVGQVLRIKGRPK 133 (485)
T ss_pred ccHhhCCCCCCceEEEEEEeEccCceEEEeCCCCCCcEEEEEEEEcCCCeEEEEEechHhHhhhcccCCCCEEEEeceEe
Confidence 4688998764 78888888866 555554 2 36788999999999999999998888889999999999999885
Q ss_pred eeccCCceEEEEcccc
Q psy9396 1048 EDRFLKNIRINAEKIF 1063 (1149)
Q Consensus 1048 ~~~~~~~~~ii~~~i~ 1063 (1149)
. .+ +++.+.+..+.
T Consensus 134 ~-~y-s~~El~i~~ve 147 (485)
T PRK07211 134 D-GY-NGLEVSVDKVE 147 (485)
T ss_pred c-cc-cceEEEEeeEE
Confidence 3 33 34555555443
No 93
>TIGR00621 ssb single stranded DNA-binding protein (ssb). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.01 E-value=1 Score=47.13 Aligned_cols=81 Identities=19% Similarity=0.310 Sum_probs=56.9
Q ss_pred ceEEEEEEEe-eeEeeecCC-cEEEEEEE-------------eCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeec
Q psy9396 986 SCTVSGIITE-LKLKTTYRG-KILIIVID-------------DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDR 1050 (1149)
Q Consensus 986 ~v~v~G~I~~-vk~~~TK~G-~mafltle-------------D~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~ 1050 (1149)
.+.+.|.|.. ...+.|++| .++-++|. |.+..+.|++|-+.-+.+...|++|..|.|+|+++.+.
T Consensus 6 ~V~L~G~l~~dPe~r~t~~G~~v~~fsvA~~~~~~~~~G~~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~L~~~~ 85 (164)
T TIGR00621 6 KVILVGRLTRDPELRYTPSGNAVANFTLATNRRWKDQDGEWKEETEWHDIVIFGRLAEVAAQYLKKGSLVYVEGRLRTRK 85 (164)
T ss_pred EEEEEEEeCCCCEEEECCCCCEEEEEEEEEcCceecCCCCEeccceEEEEEEehHHHHHHHHhCCCCCEEEEEEEEEece
Confidence 4667777664 344566677 55533322 33568999999998888889999999999999999764
Q ss_pred c---CC----ceEEEEccccccH
Q psy9396 1051 F---LK----NIRINAEKIFDIN 1066 (1149)
Q Consensus 1051 ~---~~----~~~ii~~~i~~l~ 1066 (1149)
+ +| .+.|+|++|..|.
T Consensus 86 ~~~kdG~~~~~~ev~a~~i~~L~ 108 (164)
T TIGR00621 86 WEDQNGQKRSKTEIIADNVQLLD 108 (164)
T ss_pred EECCCCcEEEEEEEEEEEEeecc
Confidence 3 23 2467888775554
No 94
>PRK06863 single-stranded DNA-binding protein; Provisional
Probab=92.01 E-value=1.1 Score=47.08 Aligned_cols=81 Identities=11% Similarity=0.223 Sum_probs=58.3
Q ss_pred ceEEEEEEEe-eeEeeecCC-cEEEEEEEe--------------CCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEee
Q psy9396 986 SCTVSGIITE-LKLKTTYRG-KILIIVIDD--------------NSNSVEVIINNQLYEKNKNILKENELLIVSGKVLED 1049 (1149)
Q Consensus 986 ~v~v~G~I~~-vk~~~TK~G-~mafltleD--------------~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~ 1049 (1149)
.+.++|-+.. ...+.|.+| .++-++|-- .+..+.|++|-+.-+.+...|++|..|+|+|+++.+
T Consensus 6 ~V~LiGrLg~DPElR~t~nG~~va~fsVAvn~~~~d~~~Ge~~e~t~w~~Vv~fgk~AE~v~~~LkKGs~V~VeGrL~~r 85 (168)
T PRK06863 6 KVIIVGHLGNDPEIRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRQAEVAGEYLRKGSQVYVEGRLKTR 85 (168)
T ss_pred EEEEEEEcCCCCEEEEcCCCCEEEEEEEEecCcccccCCCcccccceEEEEEEEhHHHHHHHHHCCCCCEEEEEEEEEeC
Confidence 5677777765 345566777 566433321 244789999999888889999999999999999986
Q ss_pred ccC---C----ceEEEEccccccH
Q psy9396 1050 RFL---K----NIRINAEKIFDIN 1066 (1149)
Q Consensus 1050 ~~~---~----~~~ii~~~i~~l~ 1066 (1149)
.+. | ...|++++|.-|+
T Consensus 86 ~w~DkdG~~r~~~eI~a~~i~~L~ 109 (168)
T PRK06863 86 KWQDQNGQDRYTTEIQGDVLQMLG 109 (168)
T ss_pred CccCCCCCEEEEEEEEEeEEEECC
Confidence 443 2 2467888887665
No 95
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=91.94 E-value=0.65 Score=56.24 Aligned_cols=161 Identities=18% Similarity=0.233 Sum_probs=94.7
Q ss_pred cccccCC---CCceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEch----HHHHHHHhhccCCcEEEEEEEEEee
Q psy9396 977 YLSELKP---TYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINN----QLYEKNKNILKENELLIVSGKVLED 1049 (1149)
Q Consensus 977 ~i~~l~~---~~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp----~~y~~~~~~l~~~~~v~v~G~v~~~ 1049 (1149)
.++++.. ++.|+|.|.|.++|.. |+++|+.|.|.+|.+.+++-. +.++.. ..|..|.+|.|+|.+...
T Consensus 6 ~~~~l~~~~~g~~V~i~GrV~~~R~~----gk~~Fl~LrD~~g~iQ~v~~~~~~~~~~~~~-~~L~~gs~V~v~G~v~~~ 80 (437)
T PRK05159 6 LTSELTPELDGEEVTLAGWVHEIRDL----GGIAFLILRDRSGIIQVVVKKKVDEELFETI-KKLKRESVVSVTGTVKAN 80 (437)
T ss_pred EhhhCChhhCCCEEEEEEEeEeeecC----CCeEEEEEEcCCcEEEEEEeCCccHHHHHHH-hCCCCCcEEEEEEEEEcC
Confidence 4455543 3489999999887663 358999999999999998853 345544 458889999999999975
Q ss_pred cc-CCceEEEEccccccHHHHHhc-----------------CcEEEEEecCc--------chHHHHHHHHHhcCCC--CC
Q psy9396 1050 RF-LKNIRINAEKIFDINVARILY-----------------GKKFSVMFNRT--------FNISILKKILLRFKCK--NG 1101 (1149)
Q Consensus 1050 ~~-~~~~~ii~~~i~~l~~~~~~~-----------------~~~l~i~l~~~--------~~l~~l~~il~~~~G~--G~ 1101 (1149)
.. .+++.+.++++.-+..+.... ...|.++-+.. ..+..+++.+.+. |= =.
T Consensus 81 ~~~~~~~el~~~~i~vls~a~~~~P~~~~~~~~~~~~~~~~~r~Ldlr~~~~~~~l~~Rs~i~~~iR~ff~~~-gf~EV~ 159 (437)
T PRK05159 81 PKAPGGVEVIPEEIEVLNKAEEPLPLDISGKVLAELDTRLDNRFLDLRRPRVRAIFKIRSEVLRAFREFLYEN-GFTEIF 159 (437)
T ss_pred CCCCCCEEEEEeEEEEEeCCCCCCCCCccccccCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEe
Confidence 31 245777776665443322111 11233321111 1355566666542 20 03
Q ss_pred ccEEEEEEecCcee--EEE-EcCCcceecCcHHHHHHHHh-cCcccE
Q psy9396 1102 LPFVLYYCINKSIK--YEM-KFPLNYKVQPIDDLKLALIN-LGLYNA 1144 (1149)
Q Consensus 1102 ~~V~l~~~~~~~~~--~~~-~l~~~~~v~~~~~l~~~L~~-~G~~~v 1144 (1149)
+|+..... .+++. ..+ ..+..+.+..++++..++-- -|-+.|
T Consensus 160 TP~L~~~~-~eg~~~~f~~~~~~~~~~L~~Spql~~q~l~~~g~~rV 205 (437)
T PRK05159 160 TPKIVASG-TEGGAELFPIDYFEKEAYLAQSPQLYKQMMVGAGFERV 205 (437)
T ss_pred CCcccccC-CCCCcceEeEEecCCceEecCCHHHHHHHHHhcCCCcE
Confidence 44443222 12221 112 34677789999999766554 445554
No 96
>PF00436 SSB: Single-strand binding protein family; InterPro: IPR000424 The Escherichia coli single-strand binding protein [] (gene ssb), also known as the helix-destabilising protein, is a protein of 177 amino acids. It binds tightly, as a homotetramer, to single-stranded DNA (ss-DNA) and plays an important role in DNA replication, recombination and repair. Closely related variants of SSB are encoded in the genome of a variety of large self-transmissible plasmids. SSB has also been characterised in bacteria such as Proteus mirabilis or Serratia marcescens. Eukaryotic mitochondrial proteins that bind ss-DNA and are probably involved in mitochondrial DNA replication are structurally and evolutionary related to prokaryotic SSB.; GO: 0003697 single-stranded DNA binding; PDB: 3UDG_B 1SE8_A 2CWA_A 3ULL_B 1S3O_A 2DUD_A 3AFP_A 3AFQ_A 3VDY_A 3EIV_C ....
Probab=91.89 E-value=1.3 Score=41.94 Aligned_cols=78 Identities=21% Similarity=0.327 Sum_probs=51.7
Q ss_pred ceEEEEEEEe-eeEeeecCC-cEEEEEE-------------EeCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeec
Q psy9396 986 SCTVSGIITE-LKLKTTYRG-KILIIVI-------------DDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDR 1050 (1149)
Q Consensus 986 ~v~v~G~I~~-vk~~~TK~G-~mafltl-------------eD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~ 1050 (1149)
.+.+.|.|.. .+.+.|++| .++-++| .+.+..++|++|.+.-+.....+++|..|.|+|+++.+.
T Consensus 3 ~v~l~G~l~~~p~~~~~~~g~~~~~f~la~~~~~~~~~~~~~~~~~~~~v~~~g~~A~~~~~~l~kG~~V~V~G~l~~~~ 82 (104)
T PF00436_consen 3 KVTLIGRLGKDPELRYTKNGTPVARFSLAVNRRFKDDGGEGDEKTDWINVVAWGKLAENVAEYLKKGDRVYVEGRLRTRT 82 (104)
T ss_dssp EEEEEEEESSSEEEEEETTSEEEEEEEEEEEEEEEETTSCEEEEEEEEEEEEEHHHHHHHHHH--TT-EEEEEEEEEEEE
T ss_pred EEEEEEEECCCcEEEECCCCCEEEEEEEEEecEEeeeeccCccceEEEEEEeeeecccccceEEcCCCEEEEEEEEEeeE
Confidence 4667787764 677777778 5652222 223447899999998888889999999999999999753
Q ss_pred c---CC----ceEEEEcccc
Q psy9396 1051 F---LK----NIRINAEKIF 1063 (1149)
Q Consensus 1051 ~---~~----~~~ii~~~i~ 1063 (1149)
+ +| ..+++|++|.
T Consensus 83 ~~~~~G~~~~~~~i~a~~i~ 102 (104)
T PF00436_consen 83 YEDKDGQKRYRVEIIADNIE 102 (104)
T ss_dssp EESTTSSEEEEEEEEEEEEE
T ss_pred EECCCCCEEEEEEEEEEEEE
Confidence 2 22 2356666654
No 97
>PRK15491 replication factor A; Provisional
Probab=91.82 E-value=0.47 Score=56.16 Aligned_cols=88 Identities=16% Similarity=0.264 Sum_probs=66.9
Q ss_pred ccccccCCCC-ceEEEEEEEee---eEeeecCC---cEEEEEEEeCCceEEEEEchHHHHHHH-hhccCCcEEEEEEEEE
Q psy9396 976 IYLSELKPTY-SCTVSGIITEL---KLKTTYRG---KILIIVIDDNSNSVEVIINNQLYEKNK-NILKENELLIVSGKVL 1047 (1149)
Q Consensus 976 ~~i~~l~~~~-~v~v~G~I~~v---k~~~TK~G---~mafltleD~tg~ie~vvFp~~y~~~~-~~l~~~~~v~v~G~v~ 1047 (1149)
.+|++|.++. .+.+-|.|+++ |....++| +++-+++-|+||++-+++|.+.-..+. ..|.+|.++.|.|.+.
T Consensus 58 ~kI~dL~~~~~~v~i~arVl~~~~~R~f~r~dGs~g~v~~~~v~DeTG~ir~tlW~~~a~~~~~~~le~G~v~~I~~~~~ 137 (374)
T PRK15491 58 TKIADINESSSNVNFTAKVVSIFEPKEFNRNDGTTGRVGNIIVADETGSIRLTLWDDLADLIKTGDIEVGKSLNISGYAK 137 (374)
T ss_pred ccHHHCCCCCCceEEEEEEeeccCCeeeecCCCCceEEEEEEEEcCCCeEEEEEECchhhhhccCCcCCCCEEEEeeeec
Confidence 4678887764 78888988876 34444556 677799999999999999998877766 5799999999999876
Q ss_pred eeccCCceEEEEcccccc
Q psy9396 1048 EDRFLKNIRINAEKIFDI 1065 (1149)
Q Consensus 1048 ~~~~~~~~~ii~~~i~~l 1065 (1149)
.. ++ ++.+.+.+-..+
T Consensus 138 ~~-y~-g~Ei~i~~~~~i 153 (374)
T PRK15491 138 EG-YS-GIEVNIGRYGGI 153 (374)
T ss_pred cC-cc-cEEEEeCCCcee
Confidence 43 33 477777754433
No 98
>PRK02801 primosomal replication protein N; Provisional
Probab=91.65 E-value=1.8 Score=41.65 Aligned_cols=78 Identities=17% Similarity=0.201 Sum_probs=55.7
Q ss_pred ceEEEEEEEee-eEeeecCC-cEEEEEEEe-----CCce-------EEEEEchHHHHHHHhhccCCcEEEEEEEEEe-ec
Q psy9396 986 SCTVSGIITEL-KLKTTYRG-KILIIVIDD-----NSNS-------VEVIINNQLYEKNKNILKENELLIVSGKVLE-DR 1050 (1149)
Q Consensus 986 ~v~v~G~I~~v-k~~~TK~G-~mafltleD-----~tg~-------ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~-~~ 1050 (1149)
.+.+.|.++.- ..+.|.+| +.+-++|.= +.+. +++++|-+.-+.....+..|..|.|+|++.. .+
T Consensus 4 ~v~L~Grl~~dpelr~Tp~G~~v~~f~La~~~~~~ea~~~r~~~~~i~~va~G~~Ae~~~~~l~kGs~v~V~G~L~~~~~ 83 (101)
T PRK02801 4 RLVLSGTVCRTPKRKVSPSGIPHCQFVLEHRSVQEEAGLHRQAWCRMPVIVSGNQFQAITQSITVGSKITVQGFISCHQG 83 (101)
T ss_pred EEEEEEEECcCcceEECCCCCeEEEEEEEEeCeEecCCCceeEEEEEEEEEEcHHHHHHHhhcCCCCEEEEEEEEEEeEC
Confidence 56778877755 66678888 666444432 2233 8899999999999999999999999999996 33
Q ss_pred cCCc--eEEEEcccc
Q psy9396 1051 FLKN--IRINAEKIF 1063 (1149)
Q Consensus 1051 ~~~~--~~ii~~~i~ 1063 (1149)
.+|. ..++++++.
T Consensus 84 ~~g~~~~~v~~~~i~ 98 (101)
T PRK02801 84 RNGLSKLVLHAEQIE 98 (101)
T ss_pred CCCCEEEEEEEEEEE
Confidence 3332 335555544
No 99
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=91.62 E-value=0.85 Score=57.80 Aligned_cols=85 Identities=14% Similarity=0.282 Sum_probs=61.0
Q ss_pred cccccCC---CCceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEch-----HHHHHHHhhccCCcEEEEEEEEEe
Q psy9396 977 YLSELKP---TYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINN-----QLYEKNKNILKENELLIVSGKVLE 1048 (1149)
Q Consensus 977 ~i~~l~~---~~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp-----~~y~~~~~~l~~~~~v~v~G~v~~ 1048 (1149)
.+.+|.. ++.|+++|+|.++|.. |+++|+.|.|.+|.+.+++-+ +.|+.. ..|..+.+|.|+|.|..
T Consensus 8 ~cg~l~~~~~g~~V~l~GWV~~~R~~----G~l~FidLRD~~G~iQvV~~~~~~~~~~~~~~-~~L~~EsvV~V~G~v~~ 82 (706)
T PRK12820 8 FCGHLSLDDTGREVCLAGWVDAFRDH----GELLFIHLRDRNGFIQAVFSPEAAPADVYELA-ASLRAEFCVALQGEVQK 82 (706)
T ss_pred ccccCChhhCCCEEEEEEEEEEEEcC----CCcEEEEEEeCCccEEEEEeCCcCCHHHHHHH-hcCCCCCEEEEEeEEec
Confidence 3445543 3489999999887753 358999999999999998864 345444 45888999999999987
Q ss_pred ec--------cCCceEEEEccccccH
Q psy9396 1049 DR--------FLKNIRINAEKIFDIN 1066 (1149)
Q Consensus 1049 ~~--------~~~~~~ii~~~i~~l~ 1066 (1149)
+. ..+++.+.++++.-+.
T Consensus 83 r~~~~~n~~~~tg~iEl~~~~i~iL~ 108 (706)
T PRK12820 83 RLEETENPHIETGDIEVFVRELSILA 108 (706)
T ss_pred cCccccCCCCCCCcEEEEeeEEEEEe
Confidence 31 1255677777665543
No 100
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=91.57 E-value=0.79 Score=55.72 Aligned_cols=79 Identities=24% Similarity=0.363 Sum_probs=59.0
Q ss_pred CCceEEEEEEEeeeEeeecCCcEEEEEEEeCC--ceEEEEEchH----HHHHHHhhccCCcEEEEEEEEEeec-cCCceE
Q psy9396 984 TYSCTVSGIITELKLKTTYRGKILIIVIDDNS--NSVEVIINNQ----LYEKNKNILKENELLIVSGKVLEDR-FLKNIR 1056 (1149)
Q Consensus 984 ~~~v~v~G~I~~vk~~~TK~G~mafltleD~t--g~ie~vvFp~----~y~~~~~~l~~~~~v~v~G~v~~~~-~~~~~~ 1056 (1149)
+..|+|+|.|.++|. .|+++|+.|.|.+ |.+.+++-.+ .+... ..|..|.+|.|+|.+.... ..++..
T Consensus 16 g~~v~v~Gwv~~~R~----~~~~~F~~lrD~~~~g~iQ~v~~~~~~~~~~~~~-~~l~~gs~V~v~G~v~~~~~~~~~~E 90 (453)
T TIGR00457 16 GDEVTVSGWVRTKRS----SKKIIFLELNDGSSLGPIQAVINGEDNPYLFQLL-KSLTTGSSVSVTGKVVESPGKGQPVE 90 (453)
T ss_pred CCEEEEEEEeEEEEc----CCCeEEEEEECCCCCccEEEEEeCCcChHHHHHH-HcCCCCcEEEEEEEEEcCCCCCCCEE
Confidence 348999999998872 3469999999999 9999988643 33333 4588999999999998641 235677
Q ss_pred EEEccccccHH
Q psy9396 1057 INAEKIFDINV 1067 (1149)
Q Consensus 1057 ii~~~i~~l~~ 1067 (1149)
+.++++.-+..
T Consensus 91 l~~~~i~vl~~ 101 (453)
T TIGR00457 91 LQVKKIEVVGE 101 (453)
T ss_pred EEEeEEEEEec
Confidence 77777655543
No 101
>PF15072 DUF4539: Domain of unknown function (DUF4539)
Probab=91.52 E-value=0.55 Score=43.72 Aligned_cols=52 Identities=15% Similarity=0.270 Sum_probs=44.0
Q ss_pred EEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEE
Q psy9396 988 TVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVS 1043 (1149)
Q Consensus 988 ~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~ 1043 (1149)
+++|+|.++.. ++.=+++++.|.||++.+++-.+++++|...|..|.+++++
T Consensus 6 ~l~v~Iks~~~----~~~D~~v~l~DpTG~i~~tiH~~v~~~y~~~l~~GavLlLk 57 (86)
T PF15072_consen 6 CLVVIIKSIVP----SSEDAFVVLKDPTGEIRGTIHRKVLEEYGDELSPGAVLLLK 57 (86)
T ss_pred EEEEEEEEeec----cCCCeEEEEECCCCcEEEEEeHHHHhhcCCccccCEEEEEe
Confidence 46777776654 33346999999999999999999999999999999998886
No 102
>PRK07274 single-stranded DNA-binding protein; Provisional
Probab=91.52 E-value=1.5 Score=44.21 Aligned_cols=81 Identities=11% Similarity=0.220 Sum_probs=55.7
Q ss_pred ceEEEEEEEee-eEeeecCC-cEEEEEEE------e-----CCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeeccC
Q psy9396 986 SCTVSGIITEL-KLKTTYRG-KILIIVID------D-----NSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFL 1052 (1149)
Q Consensus 986 ~v~v~G~I~~v-k~~~TK~G-~mafltle------D-----~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~~ 1052 (1149)
.+.+.|-+.+- ..+.|.+| .++-++|- | .+.-+.|++|.+.-+.....+++|..|.|+|++..+.++
T Consensus 4 ~v~LiGrL~~dPelr~t~~g~~~~~fslAv~~~~k~~~g~~~t~w~~v~~fg~~Ae~v~~~l~KG~~V~V~Grl~~~~y~ 83 (131)
T PRK07274 4 KVILIGRLTATPELVKTANDKSVARVTLAVNRRFKNQNGEREADFINVVLWGKLAETLASYASKGSLISIDGELRTRKYE 83 (131)
T ss_pred EEEEEEEccCCCeEEECCCCCEEEEEEEEEcCceecCCCCEEEEEEEEEEehHHHHHHHHHcCCCCEEEEEEEEEeccCc
Confidence 35566666543 44455666 45544433 1 245789999999888889999999999999999987552
Q ss_pred --C----ceEEEEccccccH
Q psy9396 1053 --K----NIRINAEKIFDIN 1066 (1149)
Q Consensus 1053 --~----~~~ii~~~i~~l~ 1066 (1149)
| ...++++++.-|+
T Consensus 84 kdG~~~~~~eviv~~i~~l~ 103 (131)
T PRK07274 84 KDGQTHYVTEVLCQSFQLLE 103 (131)
T ss_pred cCCcEEEEEEEEEEEEEECc
Confidence 2 2357777776554
No 103
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=91.51 E-value=0.86 Score=56.79 Aligned_cols=78 Identities=24% Similarity=0.308 Sum_probs=59.6
Q ss_pred CCceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchH--HHHHHHhhccCCcEEEEEEEEEeec--------cCC
Q psy9396 984 TYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQ--LYEKNKNILKENELLIVSGKVLEDR--------FLK 1053 (1149)
Q Consensus 984 ~~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~--~y~~~~~~l~~~~~v~v~G~v~~~~--------~~~ 1053 (1149)
++.|+++|+|.++|.. |+++|+.|.|.+|.+.+++-++ .|+.. ..|..+.+|.|+|.|..+. ..+
T Consensus 15 g~~V~l~GwV~~~R~~----Gkl~Fi~LrD~sg~iQvv~~~~~~~~~~~-~~L~~esvV~V~G~v~~r~~~~~n~~~~tg 89 (583)
T TIGR00459 15 GQTVTLAGWVNRRRDL----GGLIFIDLRDRSGIVQVVCDPDADALKLA-KGLRNEDVVQVKGKVSARPEGNINRNLDTG 89 (583)
T ss_pred CCEEEEEEEEEEEEcC----CCcEEEEEEeCCccEEEEEeCCHHHHHHH-hcCCCCCEEEEEEEEEeCCccccCccCCCC
Confidence 3489999999887753 4589999999999999988654 44444 3578899999999998531 245
Q ss_pred ceEEEEccccccH
Q psy9396 1054 NIRINAEKIFDIN 1066 (1149)
Q Consensus 1054 ~~~ii~~~i~~l~ 1066 (1149)
++.+.++++.-+.
T Consensus 90 ~iEl~~~~i~iL~ 102 (583)
T TIGR00459 90 EIEILAESITLLN 102 (583)
T ss_pred cEEEEEeEEEEee
Confidence 6788888876654
No 104
>PLN02903 aminoacyl-tRNA ligase
Probab=91.17 E-value=0.91 Score=57.00 Aligned_cols=79 Identities=19% Similarity=0.230 Sum_probs=58.5
Q ss_pred CCceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchH----HHHHHHhhccCCcEEEEEEEEEeec--------c
Q psy9396 984 TYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQ----LYEKNKNILKENELLIVSGKVLEDR--------F 1051 (1149)
Q Consensus 984 ~~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~----~y~~~~~~l~~~~~v~v~G~v~~~~--------~ 1051 (1149)
+++|+|+|+|.++|.. |+++|+.|.|.+|.+.+|+.++ .++.. ..|..+.+|.|+|+|..+. .
T Consensus 72 gk~V~l~GWV~~~R~~----G~l~FidLRD~~G~iQvV~~~~~~~~~~~~~-~~L~~esvV~V~G~V~~r~~~~~n~~~~ 146 (652)
T PLN02903 72 GSRVTLCGWVDLHRDM----GGLTFLDVRDHTGIVQVVTLPDEFPEAHRTA-NRLRNEYVVAVEGTVRSRPQESPNKKMK 146 (652)
T ss_pred CCEEEEEEEEEEEecC----CCcEEEEEEcCCccEEEEEeCCccHHHHHHH-hcCCCCCEEEEEEEEEeCCCcCcCCCCC
Confidence 3489999999987763 3589999999999999988753 23322 4588899999999998641 1
Q ss_pred CCceEEEEccccccHH
Q psy9396 1052 LKNIRINAEKIFDINV 1067 (1149)
Q Consensus 1052 ~~~~~ii~~~i~~l~~ 1067 (1149)
.|.+.+.++++.-+..
T Consensus 147 tGeiEl~~~~i~VL~~ 162 (652)
T PLN02903 147 TGSVEVVAESVDILNV 162 (652)
T ss_pred CCCEEEEEeEEEEEec
Confidence 2457777777755543
No 105
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=91.13 E-value=1.8 Score=54.06 Aligned_cols=77 Identities=12% Similarity=0.229 Sum_probs=60.1
Q ss_pred ceEEEEEEEeeeEeeecCC-cEEEEEEEeCCceEEEEEc-------hHHHHHHHhhccCCcEEEEEEEEEeeccCCceEE
Q psy9396 986 SCTVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIIN-------NQLYEKNKNILKENELLIVSGKVLEDRFLKNIRI 1057 (1149)
Q Consensus 986 ~v~v~G~I~~vk~~~TK~G-~mafltleD~tg~ie~vvF-------p~~y~~~~~~l~~~~~v~v~G~v~~~~~~~~~~i 1057 (1149)
.++|+|.|.++|.. | +++|++|.|.+|.+.+++- .+.|......+..|.+|-|+|.+.+.. .+++.+
T Consensus 134 ~v~v~Grv~~~R~~----G~k~~F~~L~d~~g~iQv~~~~~~~~~~~~~~~~~~~~l~~Gd~V~V~G~~~~t~-~gel~i 208 (585)
T PTZ00417 134 ILNVTGRIMRVSAS----GQKLRFFDLVGDGAKIQVLANFAFHDHTKSNFAECYDKIRRGDIVGIVGFPGKSK-KGELSI 208 (585)
T ss_pred eEEEEEEEEeeecC----CCCCEEEEEEeCCeeEEEEEECCccCCCHHHHHHHHhcCCCCCEEEEEeEEcCCC-CceEEE
Confidence 58999999887753 3 5899999999999999986 234555445688999999999988653 578888
Q ss_pred EEccccccHH
Q psy9396 1058 NAEKIFDINV 1067 (1149)
Q Consensus 1058 i~~~i~~l~~ 1067 (1149)
.++++.-+..
T Consensus 209 ~~~~i~llsk 218 (585)
T PTZ00417 209 FPKETIILSP 218 (585)
T ss_pred EEEEEEEEec
Confidence 8887766653
No 106
>PRK07772 single-stranded DNA-binding protein; Provisional
Probab=91.07 E-value=1.5 Score=46.84 Aligned_cols=78 Identities=19% Similarity=0.239 Sum_probs=55.3
Q ss_pred ceEEEEEEEe-eeEeeecCC-cEEEEEEEe---------------CCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEe
Q psy9396 986 SCTVSGIITE-LKLKTTYRG-KILIIVIDD---------------NSNSVEVIINNQLYEKNKNILKENELLIVSGKVLE 1048 (1149)
Q Consensus 986 ~v~v~G~I~~-vk~~~TK~G-~mafltleD---------------~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~ 1048 (1149)
.|.+.|-+.. -..+.|++| .++-++|.- .+--++|++|.+.-+.+...|++|..|+|+|+++.
T Consensus 6 ~VtLiGrL~~DPElR~t~sG~~va~FrVAv~~r~~~~~~g~~~d~~t~fi~V~~Wg~~Ae~va~~L~KGd~V~V~GrL~~ 85 (186)
T PRK07772 6 TITVVGNLTADPELRFTPSGAAVANFTVASTPRTFDRQTNEWKDGEALFLRCSIWRQAAENVAESLTKGMRVIVTGRLKQ 85 (186)
T ss_pred EEEEEEEeCCCCeEEEcCCCCEEEEEEEEecCcceecCCCcEeccCceEEEEEEecHHHHHHHHhcCCCCEEEEEEEEEc
Confidence 5667776664 355577788 566444431 23467899999988889899999999999999997
Q ss_pred eccC---C----ceEEEEcccc
Q psy9396 1049 DRFL---K----NIRINAEKIF 1063 (1149)
Q Consensus 1049 ~~~~---~----~~~ii~~~i~ 1063 (1149)
+.+. + .++|+|++|-
T Consensus 86 r~wedkdG~~rt~~eV~a~~Vg 107 (186)
T PRK07772 86 RSYETREGEKRTVVELEVDEIG 107 (186)
T ss_pred CceECCCCCEEEEEEEEEEEcc
Confidence 6432 2 2456666664
No 107
>PRK13732 single-stranded DNA-binding protein; Provisional
Probab=91.03 E-value=1.8 Score=45.83 Aligned_cols=65 Identities=11% Similarity=0.217 Sum_probs=50.1
Q ss_pred ceEEEEEEEe-eeEeeecCC-cEEEEEEEe--------------CCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEee
Q psy9396 986 SCTVSGIITE-LKLKTTYRG-KILIIVIDD--------------NSNSVEVIINNQLYEKNKNILKENELLIVSGKVLED 1049 (1149)
Q Consensus 986 ~v~v~G~I~~-vk~~~TK~G-~mafltleD--------------~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~ 1049 (1149)
.|.++|-|.. ...+.|.+| .++-++|.- .+..+.|++|-+.-+.+...|++|..|+|+|++..+
T Consensus 8 ~V~LiGrLg~DPElR~t~nG~~va~fslAvn~~~kd~~~Ge~~e~t~w~~Vv~wgk~Ae~v~~~L~KG~~V~VeGrL~~r 87 (175)
T PRK13732 8 KVILVGRLGKDPEVRYIPNGGAVANLQVATSESWRDKQTGEMREQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLRTR 87 (175)
T ss_pred EEEEEEEecCCCEEEEcCCCCEEEEEEEEEcCccccCCCCceecceeEEEEEEecHHHHHHHHhcCCCCEEEEEEEEEee
Confidence 6778887774 466677788 677554432 234678999999888899999999999999999976
Q ss_pred c
Q psy9396 1050 R 1050 (1149)
Q Consensus 1050 ~ 1050 (1149)
.
T Consensus 88 ~ 88 (175)
T PRK13732 88 S 88 (175)
T ss_pred e
Confidence 3
No 108
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=90.83 E-value=0.89 Score=54.18 Aligned_cols=78 Identities=22% Similarity=0.342 Sum_probs=58.1
Q ss_pred CceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEc-----hHHHHHHHhhccCCcEEEEEEEEEeec-cCCceEEE
Q psy9396 985 YSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIIN-----NQLYEKNKNILKENELLIVSGKVLEDR-FLKNIRIN 1058 (1149)
Q Consensus 985 ~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvF-----p~~y~~~~~~l~~~~~v~v~G~v~~~~-~~~~~~ii 1058 (1149)
+.|+|.|+|-++|. .+ +++|+.|-|.||.+.+|+. ++.+. -..|..++.|.|+|.|..+. ..++..+.
T Consensus 17 ~~V~v~GWV~~~R~---~g-~i~Fi~lrDgsg~iQ~v~~~~~~~~~~~~--~~~L~~es~v~V~G~v~~~~~a~~g~El~ 90 (435)
T COG0017 17 QEVTVRGWVHNKRD---LG-KIIFLVLRDGSGFIQAVVPKNKVYEELFK--AKKLTLESSVVVTGIVKASPKAPQGFELQ 90 (435)
T ss_pred cEEEEEEEeeeecc---cC-CeEEEEEEcCCcEEEEEEECCCCcHHHhh--hhcCCCccEEEEEEEEEcCCCCCCCEEEE
Confidence 48999999875543 33 4999999999999999987 33444 34577789999999999863 22467788
Q ss_pred EccccccHHH
Q psy9396 1059 AEKIFDINVA 1068 (1149)
Q Consensus 1059 ~~~i~~l~~~ 1068 (1149)
++++.-+..+
T Consensus 91 v~~i~Vl~~a 100 (435)
T COG0017 91 VEKIEVLGEA 100 (435)
T ss_pred EEEEEEeecc
Confidence 8777655544
No 109
>PRK06642 single-stranded DNA-binding protein; Provisional
Probab=90.83 E-value=1.6 Score=45.15 Aligned_cols=77 Identities=16% Similarity=0.273 Sum_probs=55.4
Q ss_pred ceEEEEEEEe-eeEeeecCC-cEEEEEEE------e--------CCceEEEEEchH-HHHHHHhhccCCcEEEEEEEEEe
Q psy9396 986 SCTVSGIITE-LKLKTTYRG-KILIIVID------D--------NSNSVEVIINNQ-LYEKNKNILKENELLIVSGKVLE 1048 (1149)
Q Consensus 986 ~v~v~G~I~~-vk~~~TK~G-~mafltle------D--------~tg~ie~vvFp~-~y~~~~~~l~~~~~v~v~G~v~~ 1048 (1149)
.|.++|-+.. ...+.|.+| .++-++|- | .|.-+.|++|.+ .-+.+...+++|..|.|+|+++.
T Consensus 7 ~V~LiGrLg~DPElr~t~~G~~v~~fslAv~~~~k~~~~G~~~~~T~w~~v~~~g~~~Ae~~~~~l~KG~~V~V~GrL~~ 86 (152)
T PRK06642 7 KVILIGNVGRDPEIRTTGEGKKIINLSLATTETWKDRITSERKERTEWHRVVIFSEGLVSVVERYVTKGSKLYIEGSLQT 86 (152)
T ss_pred EEEEEEEccCCceEEECCCCCEEEEEEEEeccccccccCCccccceeEEEEEEeChHHHHHHHHhCCCCCEEEEEEEEEe
Confidence 6778888774 455667788 67755554 1 355788999986 66778888999999999999997
Q ss_pred eccC---Cc----eEEEEccc
Q psy9396 1049 DRFL---KN----IRINAEKI 1062 (1149)
Q Consensus 1049 ~~~~---~~----~~ii~~~i 1062 (1149)
+.+. |. ..++|+++
T Consensus 87 ~~y~dkdG~~r~~~eVvv~~~ 107 (152)
T PRK06642 87 RKWNDNSGQEKYTTEVVLQNF 107 (152)
T ss_pred CeeECCCCCEEEEEEEEEEec
Confidence 6432 22 34666655
No 110
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=90.81 E-value=1.2 Score=55.95 Aligned_cols=79 Identities=19% Similarity=0.302 Sum_probs=58.4
Q ss_pred CCceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEch--HHHHHHHhhccCCcEEEEEEEEEeec--------cCC
Q psy9396 984 TYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINN--QLYEKNKNILKENELLIVSGKVLEDR--------FLK 1053 (1149)
Q Consensus 984 ~~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp--~~y~~~~~~l~~~~~v~v~G~v~~~~--------~~~ 1053 (1149)
+++|++.|+|.++|.. |+++|+.|.|.+|.+.+++-+ +.|+.. ..+..+.+|.|+|.|..+. ..+
T Consensus 17 g~~V~l~GwV~~~R~~----g~l~Fi~LrD~~g~iQ~v~~~~~~~~~~~-~~l~~es~V~V~G~v~~~~~~~~n~~~~~g 91 (588)
T PRK00476 17 GQTVTLCGWVHRRRDH----GGLIFIDLRDREGIVQVVFDPDAEAFEVA-ESLRSEYVIQVTGTVRARPEGTVNPNLPTG 91 (588)
T ss_pred CCEEEEEEEEEEEEeC----CCeEEEEEEeCCceEEEEEeCCHHHHHHH-hCCCCCCEEEEEEEEEecCCcccCccCCCC
Confidence 3479999999887753 358999999999999998864 445433 3578899999999998742 134
Q ss_pred ceEEEEccccccHH
Q psy9396 1054 NIRINAEKIFDINV 1067 (1149)
Q Consensus 1054 ~~~ii~~~i~~l~~ 1067 (1149)
++.+.++++.-+..
T Consensus 92 ~~El~~~~i~il~~ 105 (588)
T PRK00476 92 EIEVLASELEVLNK 105 (588)
T ss_pred cEEEEEeEEEEEec
Confidence 57777777655543
No 111
>PLN02850 aspartate-tRNA ligase
Probab=90.71 E-value=1.2 Score=55.12 Aligned_cols=86 Identities=19% Similarity=0.264 Sum_probs=60.8
Q ss_pred ccccccCC---CCceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchH------HHHHHHhhccCCcEEEEEEEE
Q psy9396 976 IYLSELKP---TYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQ------LYEKNKNILKENELLIVSGKV 1046 (1149)
Q Consensus 976 ~~i~~l~~---~~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~------~y~~~~~~l~~~~~v~v~G~v 1046 (1149)
+.+.+|.. ++.|+|.|.|.++|.. |+++|++|-|.+|.+.+|+..+ ..-++...|..+.+|.|+|+|
T Consensus 70 ~~i~~l~~~~~g~~V~v~Grv~~~R~~----gk~~Fl~Lrd~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v 145 (530)
T PLN02850 70 TDVSDLGEELAGSEVLIRGRVHTIRGK----GKSAFLVLRQSGFTVQCVVFVSEVTVSKGMVKYAKQLSRESVVDVEGVV 145 (530)
T ss_pred eEhhhcchhhCCCEEEEEEEEEEEccC----CCeEEEEEEeCCcCEEEEEECCccccCHHHHHHHhCCCCCCEEEEEEEE
Confidence 45556543 3489999999877652 3589999999999999998532 333455678899999999999
Q ss_pred Eeec-----cCCceEEEEcccccc
Q psy9396 1047 LEDR-----FLKNIRINAEKIFDI 1065 (1149)
Q Consensus 1047 ~~~~-----~~~~~~ii~~~i~~l 1065 (1149)
.... ..+.+.+.++++.-+
T Consensus 146 ~~~~~~~~~~t~~~El~~~~i~vl 169 (530)
T PLN02850 146 SVPKKPVKGTTQQVEIQVRKIYCV 169 (530)
T ss_pred EccCcCCCCCCccEEEEEeEEEEE
Confidence 8421 123466666666444
No 112
>PRK02515 psbU photosystem II complex extrinsic protein precursor U; Provisional
Probab=90.58 E-value=0.36 Score=47.92 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=34.1
Q ss_pred cccccCCccHHHHHHHHHHHhcCCCCCHHHHHhhcccCCCCHHHHHHHH
Q psy9396 834 GLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLI 882 (1149)
Q Consensus 834 gl~~Ikgvg~~~~~~i~~~r~~g~f~~~~df~~r~~~~~~~~~~le~Li 882 (1149)
-|..++|+|+..|++|++ +|||+|++|+.+ + +.++.++.+.|-
T Consensus 62 el~~lpGigP~~A~~IV~---nGpf~sveDL~~-V--~GIgekqk~~l~ 104 (132)
T PRK02515 62 AFRQFPGMYPTLAGKIVK---NAPYDSVEDVLN-L--PGLSERQKELLE 104 (132)
T ss_pred HHHHCCCCCHHHHHHHHH---CCCCCCHHHHHc-C--CCCCHHHHHHHH
Confidence 367799999999999994 899999999965 4 457766555553
No 113
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=90.56 E-value=1.2 Score=57.01 Aligned_cols=77 Identities=23% Similarity=0.316 Sum_probs=58.3
Q ss_pred ccccccCCCCceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEc--hHHHHHHHhhccCCcEEEEEEEEEeeccCC
Q psy9396 976 IYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIIN--NQLYEKNKNILKENELLIVSGKVLEDRFLK 1053 (1149)
Q Consensus 976 ~~i~~l~~~~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvF--p~~y~~~~~~l~~~~~v~v~G~v~~~~~~~ 1053 (1149)
.+++++.++..+++.|.|.+.....+ +..+..+++.|++|.++++.| +.-|- ...++.|..++|.|+++.. .+
T Consensus 51 ~~i~~l~~g~~vtv~g~V~~~~~~~~-~~~~~~v~l~D~tg~i~l~~F~~n~~~~--~~~l~~G~~~~v~Gkv~~~--~~ 125 (681)
T PRK10917 51 KPIAELRPGEKVTVEGEVLSAEVVFG-KRRRLTVTVSDGTGNLTLRFFNFNQPYL--KKQLKVGKRVAVYGKVKRG--KY 125 (681)
T ss_pred CCHHHCCCCCEEEEEEEEEEEEEccC-CceEEEEEEEECCeEEEEEEEccCcHHH--HhhCCCCCEEEEEEEEEec--CC
Confidence 45677766678999999988865544 225678999999999999999 44442 4569999999999999862 34
Q ss_pred ceEE
Q psy9396 1054 NIRI 1057 (1149)
Q Consensus 1054 ~~~i 1057 (1149)
..++
T Consensus 126 ~~qm 129 (681)
T PRK10917 126 GLEM 129 (681)
T ss_pred eEEE
Confidence 4554
No 114
>PRK08182 single-stranded DNA-binding protein; Provisional
Probab=90.39 E-value=2.1 Score=44.01 Aligned_cols=81 Identities=14% Similarity=0.180 Sum_probs=55.2
Q ss_pred ceEEEEEEEe-eeEeeecCC-c----EEEEEEE-------------e-CCceEEEEEchHHHHHHHhhccCCcEEEEEEE
Q psy9396 986 SCTVSGIITE-LKLKTTYRG-K----ILIIVID-------------D-NSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045 (1149)
Q Consensus 986 ~v~v~G~I~~-vk~~~TK~G-~----mafltle-------------D-~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~ 1045 (1149)
.|.+.|-+.+ ...+.|.+| . ++-+++- | .+.-++|++|.+.-+.+...|++|..|+|+|+
T Consensus 4 ~V~LiGrLg~DPElr~t~~G~~~~~~va~fslA~~r~~~~~~Ge~~~~~t~w~~V~~wg~~Ae~v~~~l~KG~~V~V~Gr 83 (148)
T PRK08182 4 HFVGEGNIGSAPEYREFPNGNDEPRRLLRLNVYFDNPVPTKDGEYEDRGGFWAPVELWHRDAEHWARLYQKGMRVLVEGR 83 (148)
T ss_pred EEEEEEECCCCCeEEECCCCCeeeeeEEEEEEEecCceECCCCCEEecCcEEEEEEEEhHHHHHHHHhcCCCCEEEEEEE
Confidence 4566666653 455556666 3 5544442 1 23468899999988889999999999999999
Q ss_pred EEeeccC---C----ceEEEEccccccH
Q psy9396 1046 VLEDRFL---K----NIRINAEKIFDIN 1066 (1149)
Q Consensus 1046 v~~~~~~---~----~~~ii~~~i~~l~ 1066 (1149)
+..+.+. | .+.|++++|..+.
T Consensus 84 L~~~~w~dkdG~~r~~~eI~a~~i~~l~ 111 (148)
T PRK08182 84 MERDEWTDNEDNERVTFKVEARRVGILP 111 (148)
T ss_pred EEecccCCCCCCEEEEEEEEEeEEEEcC
Confidence 9876432 2 2357777776553
No 115
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=90.28 E-value=1.1 Score=59.92 Aligned_cols=78 Identities=15% Similarity=0.199 Sum_probs=61.7
Q ss_pred CCceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchH-----HHHHHHhhccCCcEEEEEEEEEeeccCCceEEE
Q psy9396 984 TYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQ-----LYEKNKNILKENELLIVSGKVLEDRFLKNIRIN 1058 (1149)
Q Consensus 984 ~~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~-----~y~~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii 1058 (1149)
+.+|+|+|.|.++|.. |+++|++|.|.+|.+.+++-.+ .+..+...+..|.+|-|+|.+.+.. .+++.+.
T Consensus 651 ~~~V~v~Grv~~~R~~----G~~~F~~lrD~~g~iQ~v~~~~~~~~~~~~~~~~~l~~gd~V~v~G~v~~t~-~ge~ei~ 725 (1094)
T PRK02983 651 GEEVSVSGRVLRIRDY----GGVLFADLRDWSGELQVLLDASRLEQGSLADFRAAVDLGDLVEVTGTMGTSR-NGTLSLL 725 (1094)
T ss_pred CCEEEEEEEEEEEeeC----CCeEEEEEEeCCeeEEEEEECCccchhhHHHHHhcCCCCCEEEEEEEEEEcC-CCCEEEE
Confidence 3479999999988763 3589999999999999988543 3566667788999999999999864 5778887
Q ss_pred EccccccH
Q psy9396 1059 AEKIFDIN 1066 (1149)
Q Consensus 1059 ~~~i~~l~ 1066 (1149)
++++.-+.
T Consensus 726 ~~~i~ll~ 733 (1094)
T PRK02983 726 VTSWRLAG 733 (1094)
T ss_pred EeEEEEEe
Confidence 77765443
No 116
>PRK07211 replication factor A; Reviewed
Probab=90.18 E-value=1.3 Score=53.73 Aligned_cols=82 Identities=15% Similarity=0.222 Sum_probs=62.3
Q ss_pred ccccccCCCC-ceEEEEEEEee---eEeeecCC---cEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEE-EEEE
Q psy9396 976 IYLSELKPTY-SCTVSGIITEL---KLKTTYRG---KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVS-GKVL 1047 (1149)
Q Consensus 976 ~~i~~l~~~~-~v~v~G~I~~v---k~~~TK~G---~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~-G~v~ 1047 (1149)
.+|.+|.++. .+.|.|.|+++ |....++| ++.-++|-|+||.+.+++|.+.-..+ ..|.+|.+|.|. |+|+
T Consensus 162 ~~I~dL~~~~~~v~I~grV~~v~~iRtf~r~dGseGkv~sv~L~DeTG~IR~TlW~d~Ad~~-~~le~G~Vv~I~~a~Vr 240 (485)
T PRK07211 162 YTVEDLSLGLSDVTLVGVVLDTDSVRTFDRDDGSEGRVSNLTVGDETGRVRVTLWDDRADLA-EELDAGESVEIVDGYVR 240 (485)
T ss_pred ccHHHcCCCCCceEEEEEEEEcCCCeEEECCCCCeeEEEEEEEEcCCCeEEEEEechhhhhh-ccCCCCCEEEEEeeEEE
Confidence 4567776654 67888888866 44444556 56679999999999999999987777 678999999885 7775
Q ss_pred eeccCCceEEEEc
Q psy9396 1048 EDRFLKNIRINAE 1060 (1149)
Q Consensus 1048 ~~~~~~~~~ii~~ 1060 (1149)
. +++++.+.+.
T Consensus 241 e--~~g~~ELsl~ 251 (485)
T PRK07211 241 E--RDGSLELHVG 251 (485)
T ss_pred e--cCCcEEEEEC
Confidence 4 4577777665
No 117
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=90.09 E-value=1.4 Score=55.91 Aligned_cols=78 Identities=21% Similarity=0.259 Sum_probs=58.4
Q ss_pred ccccccCCCCceEEEEEEEeeeEeeecCC-cEEEEEEEe-CCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeeccCC
Q psy9396 976 IYLSELKPTYSCTVSGIITELKLKTTYRG-KILIIVIDD-NSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLK 1053 (1149)
Q Consensus 976 ~~i~~l~~~~~v~v~G~I~~vk~~~TK~G-~mafltleD-~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~~~ 1053 (1149)
.+++++.++..+++.|.|.+..... +++ ++.-+.+.| .+|.+++++|...|- ...++.|..++|.|+|+.. .+
T Consensus 24 ~~i~~~~~g~~~~~~~~v~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~F~~~~~--~~~~~~g~~~~~~Gk~~~~--~~ 98 (630)
T TIGR00643 24 QTIGELLPGERATIVGEVLSHCIFG-FKRRKVLKLRLKDGGYKKLELRFFNRAFL--KKKFKVGSKVVVYGKVKSS--KF 98 (630)
T ss_pred cCHHHcCCCCEEEEEEEEEEeEecc-CCCCceEEEEEEECCCCEEEEEEECCHHH--HhhCCCCCEEEEEEEEEee--CC
Confidence 4677777777899999988753332 333 577899999 999999999975553 4679999999999999863 34
Q ss_pred ceEEE
Q psy9396 1054 NIRIN 1058 (1149)
Q Consensus 1054 ~~~ii 1058 (1149)
..+++
T Consensus 99 ~~~~~ 103 (630)
T TIGR00643 99 KAYLI 103 (630)
T ss_pred EEEEE
Confidence 45443
No 118
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=89.83 E-value=1.5 Score=52.90 Aligned_cols=77 Identities=17% Similarity=0.344 Sum_probs=61.9
Q ss_pred ceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEc-----hHHHHHHHhhccCCcEEEEEEEEEeeccCCceEEEEc
Q psy9396 986 SCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIIN-----NQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAE 1060 (1149)
Q Consensus 986 ~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvF-----p~~y~~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~~ 1060 (1149)
.|.++|-|..+|.. |+.+|+++.|.+|++.+.+- ++.|+.+...+.-|.++-|+|.+-+.. .|.+++.|+
T Consensus 63 ~v~vAGRi~~~R~~----GK~~F~~i~d~~gkiQ~yi~k~~~~~~~~~~~~~~~dlGDiigv~G~~~~T~-~GelSv~v~ 137 (502)
T COG1190 63 EVSVAGRIMTIRNM----GKASFADLQDGSGKIQLYVNKDEVGEEVFEALFKKLDLGDIIGVEGPLFKTK-TGELSVSVE 137 (502)
T ss_pred eeEEecceeeeccc----CceeEEEEecCCceEEEEEeccccchhhHHHHHhccccCCEEeeeeeeeecC-CCceEEEEE
Confidence 58899988876653 45889999999999999887 457777777888899999999998753 578888887
Q ss_pred cccccHH
Q psy9396 1061 KIFDINV 1067 (1149)
Q Consensus 1061 ~i~~l~~ 1067 (1149)
++.-+..
T Consensus 138 ~~~lLsK 144 (502)
T COG1190 138 ELRLLSK 144 (502)
T ss_pred EEeeecc
Confidence 7765543
No 119
>PRK09010 single-stranded DNA-binding protein; Provisional
Probab=89.80 E-value=2.5 Score=44.80 Aligned_cols=66 Identities=12% Similarity=0.265 Sum_probs=48.3
Q ss_pred ceEEEEEEEee-eEeeecCC-cEEEEEEE--------------eCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEee
Q psy9396 986 SCTVSGIITEL-KLKTTYRG-KILIIVID--------------DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLED 1049 (1149)
Q Consensus 986 ~v~v~G~I~~v-k~~~TK~G-~mafltle--------------D~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~ 1049 (1149)
.+.++|-|..- ..+.|.+| .++-++|- +.|..+.|++|.+.-+...+.|++|..|+|+|++..+
T Consensus 8 ~V~LiGrLg~DPelR~t~nG~~v~~fsVAvn~~~kd~~~Ge~~e~t~w~~V~~fgk~Ae~~~~~L~KGs~V~VeGrL~~~ 87 (177)
T PRK09010 8 KVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYIEGQLRTR 87 (177)
T ss_pred EEEEEEEeCCCceEEEcCCCCEEEEEEEEEcCccccCcccccccceEEEEEEEehhHHHHHHHhcCCCCEEEEEEEEEec
Confidence 56777766643 44566677 56644432 1244679999999888889999999999999999986
Q ss_pred cc
Q psy9396 1050 RF 1051 (1149)
Q Consensus 1050 ~~ 1051 (1149)
.+
T Consensus 88 ~y 89 (177)
T PRK09010 88 KW 89 (177)
T ss_pred cc
Confidence 54
No 120
>cd04496 SSB_OBF SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart
Probab=89.14 E-value=3.1 Score=39.03 Aligned_cols=63 Identities=19% Similarity=0.344 Sum_probs=44.5
Q ss_pred EEEEEEEee-eEeeecCC-cEEEEEE------------EeCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeec
Q psy9396 988 TVSGIITEL-KLKTTYRG-KILIIVI------------DDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDR 1050 (1149)
Q Consensus 988 ~v~G~I~~v-k~~~TK~G-~mafltl------------eD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~ 1050 (1149)
.+.|.|..- ..+.|++| .++-+++ .+.+..+++++|.+.-+.....+++|..|.|+|++..+.
T Consensus 2 ~l~G~l~~~p~~~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~g~~a~~~~~~~~kG~~V~v~G~l~~~~ 78 (100)
T cd04496 2 ILIGRLGKDPELRYTPSGTPVARFSLAVNRRRKDRDEEEEETDWIRVVAFGKLAENAAKYLKKGDLVYVEGRLRTRS 78 (100)
T ss_pred EEEEEecCCCEEEECCCCCEEEEEEEEEcCceecccccccccEEEEEEEEhHHHHHHHHHhCCCCEEEEEEEEEece
Confidence 456666644 33445556 4543322 235557899999998888888999999999999999753
No 121
>cd04497 hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB folds similar to the first OB fold (OB1) of human protection of telomeres 1 protein (hPOT1), the single OB fold of the N-terminal domain of Schizosaccharomyces pombe POT1 (SpPOT1), and the first OB fold of the N-terminal domain of the alpha subunit (OB1Nalpha) of Oxytricha nova telomere end binding protein (OnTEBP). POT1 proteins recognize single-stranded (ss) 3-prime ends of the telomere. A 3-prime ss overhang is conserved in ciliated protozoa, yeast, and mammals. SpPOT1 is essential for telomere maintenance. It binds specifically to the ss G-rich telomeric sequence (GGTTAC) of S. pombe. hPOT1 binds specifically to ss telomeric DNA repeats ending with the sequence GGTTAG. Deletion of the S. pombe pot1+ gene results in a rapid loss of telomere sequences, chromosome mis-segregation and chromosome circularization. hPOT1 is implicated in telomere length regulation. The hPOT1 monomer consists of two closely connected OB folds (OB1-OB
Probab=89.08 E-value=1.4 Score=44.85 Aligned_cols=84 Identities=15% Similarity=0.110 Sum_probs=61.5
Q ss_pred ccccccCC--CCceEEEEEEEeeeEeeecCC--cEEEEEEEeCCce----EEEEEchHHHHHHHhhccCCcEEEEEEEEE
Q psy9396 976 IYLSELKP--TYSCTVSGIITELKLKTTYRG--KILIIVIDDNSNS----VEVIINNQLYEKNKNILKENELLIVSGKVL 1047 (1149)
Q Consensus 976 ~~i~~l~~--~~~v~v~G~I~~vk~~~TK~G--~mafltleD~tg~----ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~ 1047 (1149)
++|+++.. +..+-++|+|+++..++..+| .+.-++|-|.++. +.+.+|.+.-+.+-.. ..|.+|++++ ++
T Consensus 4 ~~i~~~~~~~~~~v~vigVV~~~~~p~~s~g~d~~~tl~i~D~S~~~~~~l~v~~F~~~~~~LP~v-~~GDVIll~~-~k 81 (138)
T cd04497 4 TPLSSALKESGGSVNVIGVVVDAGPPVRSKGTDYCCTLTITDPSLANSDGLTVKLFRPNEESLPIV-KVGDIILLRR-VK 81 (138)
T ss_pred EeHHHHHhccCCeEEEEEEEeecCCCcccCCCcEEEEEEEECCCCCCCCcEEEEEECCChhhCCCC-CCCCEEEEEE-EE
Confidence 34555542 347889999999988755556 3668999998764 9999999988877765 8888999886 33
Q ss_pred eeccCCceEEEEcc
Q psy9396 1048 EDRFLKNIRINAEK 1061 (1149)
Q Consensus 1048 ~~~~~~~~~ii~~~ 1061 (1149)
...++|....+...
T Consensus 82 v~~~~g~~~~~~~~ 95 (138)
T cd04497 82 IQSYNGKPQGISND 95 (138)
T ss_pred EEEECCceEEEECC
Confidence 34467777776655
No 122
>PRK06341 single-stranded DNA-binding protein; Provisional
Probab=89.06 E-value=3.2 Score=43.58 Aligned_cols=65 Identities=18% Similarity=0.294 Sum_probs=46.5
Q ss_pred ceEEEEEEEe-eeEeeecCC-cEEEEEEEe--------------CCceEEEEEchH-HHHHHHhhccCCcEEEEEEEEEe
Q psy9396 986 SCTVSGIITE-LKLKTTYRG-KILIIVIDD--------------NSNSVEVIINNQ-LYEKNKNILKENELLIVSGKVLE 1048 (1149)
Q Consensus 986 ~v~v~G~I~~-vk~~~TK~G-~mafltleD--------------~tg~ie~vvFp~-~y~~~~~~l~~~~~v~v~G~v~~ 1048 (1149)
.+.+.|.+.. .+.+.|++| +++-++|.- .|.-+.|++|.+ .-+.+...|++|..|+|+|+++.
T Consensus 7 ~V~LiGrLg~DPElR~t~sG~~v~~fsVAvn~~~kd~~~Ge~~e~T~w~~Vv~fg~~~Ae~~~~~LkKG~~V~VeGrL~~ 86 (166)
T PRK06341 7 KVILIGNLGADPEIRRTQDGRPIANLRIATSETWRDRNSGERKEKTEWHRVVIFNEGLCKVAEQYLKKGAKVYIEGQLQT 86 (166)
T ss_pred EEEEEEEecCCCEEEEcCCCCEEEEEEEEEccceecCCCCcccccceEEEEEEeChHHHHHHHHhcCCCCEEEEEEEEEe
Confidence 5677777664 355567777 666433322 244678999986 66777788999999999999986
Q ss_pred ec
Q psy9396 1049 DR 1050 (1149)
Q Consensus 1049 ~~ 1050 (1149)
+.
T Consensus 87 r~ 88 (166)
T PRK06341 87 RK 88 (166)
T ss_pred Cc
Confidence 53
No 123
>PRK15491 replication factor A; Provisional
Probab=88.79 E-value=2.1 Score=50.80 Aligned_cols=85 Identities=13% Similarity=0.271 Sum_probs=61.2
Q ss_pred ccccccCCCC-ceEEEEEEEee---eEeeecCC---cEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEE-EEEEE
Q psy9396 976 IYLSELKPTY-SCTVSGIITEL---KLKTTYRG---KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIV-SGKVL 1047 (1149)
Q Consensus 976 ~~i~~l~~~~-~v~v~G~I~~v---k~~~TK~G---~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v-~G~v~ 1047 (1149)
.++++|.... .+.|.|.|.++ |....|+| ++.-+.|.|+||.+.+++|.+.-..+ ..|..|..|.| .+.++
T Consensus 167 ~~I~dl~~~~~~V~I~g~V~~~~~~r~~~~~~G~~~~v~~~~l~DetG~Ir~t~W~~~a~~~-~~l~~Gd~V~i~~~~~r 245 (374)
T PRK15491 167 QKISDIKDGDSDINIVGKVLDISDVRTFQKKDGSQGRVRNITIGDETGKIRVTLWDGKTDLA-DKLENGDSVEIINGYAR 245 (374)
T ss_pred ccHHHcCCCCccEEEEEEEEEccCceEEEecCCCeEEEEEEEEECCCCeEEEEEecchhccc-ccCCCCCEEEEEeceEE
Confidence 3567776654 68888988876 45566677 35569999999999999999876655 55778877776 55676
Q ss_pred eeccCCceEEEEcc
Q psy9396 1048 EDRFLKNIRINAEK 1061 (1149)
Q Consensus 1048 ~~~~~~~~~ii~~~ 1061 (1149)
.+.+++.+.+.+.+
T Consensus 246 ~~~~~g~~El~~~~ 259 (374)
T PRK15491 246 TNNYSQEVEIQIGN 259 (374)
T ss_pred EeccCCCEEEEeCC
Confidence 54455677777653
No 124
>cd04475 RPA1_DBD_B RPA1_DBD_B: A subfamily of OB folds corresponding to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-B, RPA1 contains three other OB folds: DBD-A, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with RPA1 DBD-A and DBD-B. RPA1 DBD-C is involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ functiona
Probab=88.79 E-value=3.5 Score=39.26 Aligned_cols=68 Identities=22% Similarity=0.267 Sum_probs=46.3
Q ss_pred eEEEEEEEee---eEeeecC-C-cE--EEEEEEeCCc-eEEEEEchHHHHHHHhhccCCcEEEEEEEEEeeccCCceEEE
Q psy9396 987 CTVSGIITEL---KLKTTYR-G-KI--LIIVIDDNSN-SVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRIN 1058 (1149)
Q Consensus 987 v~v~G~I~~v---k~~~TK~-G-~m--afltleD~tg-~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii 1058 (1149)
+-++|.|.++ +.++||+ | .. .-+++.|.|+ .+++++|.+....+.... +.++++++- ..+.++ +.++.
T Consensus 2 vDvig~V~~v~~~~~i~~k~~g~~~~~r~v~i~D~t~~~i~vtLWg~~a~~~~~~~--~~vv~~~~~-~i~~~~-~~~l~ 77 (101)
T cd04475 2 VDVIGVVKSVGPVTTITTKSTGRELDKREITLVDESGHSVELTLWGEQAELFDGSE--NPVIAIKGV-KVSEFN-GKSLS 77 (101)
T ss_pred EeEEEEEeEccCcEEEEEecCCCceeEEEEEEEeCCCCEEEEEEEHHHhhhcccCC--CCEEEEEee-EEEecC-CeEEe
Confidence 3477888877 4556777 7 33 3689999999 999999998877766433 677777763 333344 44443
No 125
>PF02765 POT1: Telomeric single stranded DNA binding POT1/CDC13; InterPro: IPR011564 This entry represents a domain that binds single stranded telomeric DNA and adopts an OB fold []. It includes the proteins POT1 and CDC13 which have been shown to regulate telomere length, replication and capping [, , ]. ; GO: 0003677 DNA binding, 0000723 telomere maintenance, 0000784 nuclear chromosome, telomeric region; PDB: 1S40_A 1KXL_A 1PH7_A 1PH9_A 1PH2_A 1OTC_A 1PHJ_A 1JB7_A 1PA6_A 1PH1_A ....
Probab=88.52 E-value=3.7 Score=42.08 Aligned_cols=76 Identities=16% Similarity=0.143 Sum_probs=56.8
Q ss_pred CceEEEEEEEeeeEe---eecCCc-EEEEEEEeCC--------ceEEEEEchHHHHHHHhhccCCcEEEEE-EEEEeecc
Q psy9396 985 YSCTVSGIITELKLK---TTYRGK-ILIIVIDDNS--------NSVEVIINNQLYEKNKNILKENELLIVS-GKVLEDRF 1051 (1149)
Q Consensus 985 ~~v~v~G~I~~vk~~---~TK~G~-mafltleD~t--------g~ie~vvFp~~y~~~~~~l~~~~~v~v~-G~v~~~~~ 1051 (1149)
..+.++|+|+..+.+ +||.+. |+.++|-|.+ ..+.+.+|.+..+.+-..-..|.++++. -+|+ .+
T Consensus 13 ~~vnvigVV~~~~~p~~~~t~g~D~~~tl~i~D~S~~~~~~~~~~l~v~iF~~~~~~LP~v~~~GDii~l~r~kv~--~~ 90 (146)
T PF02765_consen 13 KFVNVIGVVVDFSPPNPKKTRGTDYMCTLTITDPSLNDSNQKLSGLTVNIFRPHKESLPNVKSVGDIIRLRRVKVQ--SY 90 (146)
T ss_dssp EEEEEEEEEEEEEEECTEEESSSCEEEEEEEEBTTCSCSSCCCCEEEEEEEESSHHHSCTTCSTTHEEEEEEEEEE--EE
T ss_pred CEEEEEEEEEEccCCcceEcCCCcEEEEEEEECCCCCccccccCCEEEEEECCCHHHCCCCCCCCCEEEEEEEEEE--EE
Confidence 378999999999777 444444 6689999988 4799999988878876666658888776 4554 46
Q ss_pred CCceEEEEccc
Q psy9396 1052 LKNIRINAEKI 1062 (1149)
Q Consensus 1052 ~~~~~ii~~~i 1062 (1149)
++..+.+...-
T Consensus 91 ~~~~~~~~~~~ 101 (146)
T PF02765_consen 91 NGKPQGLSNST 101 (146)
T ss_dssp TTEEEEEEECE
T ss_pred CCEEEEEecCC
Confidence 78888776544
No 126
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=88.45 E-value=7.9 Score=41.89 Aligned_cols=182 Identities=13% Similarity=0.139 Sum_probs=103.4
Q ss_pred ccccccccCchhhccccHHH---HHHHHHHcCCCEEEEecCCc--hh----hHH-----HHHHHHH--hCCCeeEeeeee
Q psy9396 6 IHLRLHSEYSIIDGLLRIND---VIEAAANDYQPALAITDLSN--LF----GII-----KFYKSAY--NKGIKPIIGCDV 69 (1149)
Q Consensus 6 v~LHvHS~ySlldg~~~iee---LV~~Ake~G~~AlAITDH~n--l~----G~~-----~f~~~ak--~~GIKpIiG~Ei 69 (1149)
+|.|+|--.-+=||..+.++ +++.|++.|...+.-|-|-. +| ..+ +.-+..+ .-+|++++|.|+
T Consensus 2 IDIH~HIlp~iDDGp~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~~ln~~~~~~aidl~v~pGQEI 81 (254)
T COG4464 2 IDIHSHILPDIDDGPKSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKANQLNEILKKEAIDLKVLPGQEI 81 (254)
T ss_pred ccccccccCCCCCCCCcHHHHHHHHHHHHHcCceEEeecccccCCccCChHHHHHHHHHHHHHHHHhhcCCceeccCceE
Confidence 58999998888799999886 67889999999999999852 11 111 1111222 357999999999
Q ss_pred eeccccc-----------CCCCccEEEEEcccHHHHHHHHHHHHHHHhhccCCcccccHHHHhccccCCCeEEEeCCCcc
Q psy9396 70 WITNEIE-----------NKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLG 138 (1149)
Q Consensus 70 ~v~~~~~-----------~~~~~hlllLAkN~~Gy~nL~kL~S~~~~~~~~~~~p~i~~e~L~~~~~~~glIiis~~~~g 138 (1149)
++++... .+..|=|+=+..|.. |+-....+-+. ...|++=+.+++
T Consensus 82 rIt~~vl~~l~~g~I~tindskYlLIEF~~~~v---------------------~~ya~~lf~el-q~kGi~PIIAHP-- 137 (254)
T COG4464 82 RITGDVLDDLDKGIILTINDSKYLLIEFPMNHV---------------------PRYADQLFFEL-QSKGIIPIIAHP-- 137 (254)
T ss_pred EEchHHHHHHhcCccccccccceEEEEccCCcc---------------------hhhHHHHHHHH-HHCCceeeeech--
Confidence 9986421 112233333333321 22222222221 235766444433
Q ss_pred hHHHHHhcCChHHHHHHHHHHHHhCCCCeEEEEccCCCcch--HHHHHHHHHHHHhcCCCEEEecCccccCccCchHHHH
Q psy9396 139 DIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM--NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEV 216 (1149)
Q Consensus 139 ~i~~~l~~~~~~~a~~~~~~~~~~f~~~~ylEi~~~~~~~~--~~~n~~l~~lA~~~~iplVatnDvhyl~~eD~~~~~v 216 (1149)
+-.+.+.++ ...+.++...+.|.-++..++..- +.+-+..+++- +.|+--...+|+|-+...-+...++
T Consensus 138 ERn~~i~kn--------~~~lyeLid~ga~sQvts~Sl~GlfGK~ikK~a~~~i-E~~L~hFiASDAHn~~~R~f~~~ea 208 (254)
T COG4464 138 ERNRAIQKN--------PYLLYELIDKGAYSQVTSSSLAGLFGKKIKKFALQLI-EANLVHFIASDAHNVDKRPFHMQEA 208 (254)
T ss_pred hhHHHHHhC--------hHHHHHHHhcccceeechHhHHhhhhHHHHHHHHHHH-HcccceeeeccccccCCCCccHHHH
Confidence 222233332 223344445678888887654321 22222233333 4567777778999888777777766
Q ss_pred HHHH
Q psy9396 217 RTCI 220 (1149)
Q Consensus 217 L~aI 220 (1149)
+.-.
T Consensus 209 ~~~~ 212 (254)
T COG4464 209 FHLV 212 (254)
T ss_pred HHHH
Confidence 6543
No 127
>PRK12366 replication factor A; Reviewed
Probab=88.29 E-value=1.8 Score=54.85 Aligned_cols=83 Identities=20% Similarity=0.330 Sum_probs=62.9
Q ss_pred ccccccCCCC-ceEEEEEEEee---eEeeecCC---cEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEe
Q psy9396 976 IYLSELKPTY-SCTVSGIITEL---KLKTTYRG---KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLE 1048 (1149)
Q Consensus 976 ~~i~~l~~~~-~v~v~G~I~~v---k~~~TK~G---~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~ 1048 (1149)
.+|++|.++. .+.+.|.|+++ |...+++| +++-+.+.|+||++-+++|.+.-+.+ ..|.+|.++.|.+-.-.
T Consensus 64 ~~I~dl~p~~~~v~i~arV~~~~~~r~~~~~~G~eGkv~~~~v~DetG~Ir~t~W~~~~~~~-~~le~G~v~~i~~~~v~ 142 (637)
T PRK12366 64 FKISDIEEGQINVEITGRIIEISNIKTFTRKDGSTGKLANITIADNTGTIRLTLWNDNAKLL-KGLKEGDVIKIENARSR 142 (637)
T ss_pred eEHHHCcCCCcceEEEEEEEEccCCeEEECCCCCccEEEEEEEEcCCCEEEEEEEchhhhhh-ccCCCCCEEEEeccEec
Confidence 4678887765 78888888866 55566665 57889999999999999999875544 67999999998876443
Q ss_pred eccCCceEEEEc
Q psy9396 1049 DRFLKNIRINAE 1060 (1149)
Q Consensus 1049 ~~~~~~~~ii~~ 1060 (1149)
.+++.+++.+.
T Consensus 143 -~~~~~~el~~~ 153 (637)
T PRK12366 143 -KWNNDVELNSG 153 (637)
T ss_pred -ccCCceEEEcC
Confidence 34566666543
No 128
>PLN02603 asparaginyl-tRNA synthetase
Probab=88.07 E-value=2.7 Score=52.35 Aligned_cols=79 Identities=15% Similarity=0.355 Sum_probs=56.8
Q ss_pred CceEEEEEEEeeeEeeecCCcEEEEEEEeCCc--eEEEEEchH--HHHHHHh-hccCCcEEEEEEEEEeecc-CCceEEE
Q psy9396 985 YSCTVSGIITELKLKTTYRGKILIIVIDDNSN--SVEVIINNQ--LYEKNKN-ILKENELLIVSGKVLEDRF-LKNIRIN 1058 (1149)
Q Consensus 985 ~~v~v~G~I~~vk~~~TK~G~mafltleD~tg--~ie~vvFp~--~y~~~~~-~l~~~~~v~v~G~v~~~~~-~~~~~ii 1058 (1149)
++|+|.|+|.++|.. |+++|+.|.|+++ .+.+|+-++ .|+.... .|..|.+|.|+|.+..... .+.+.+.
T Consensus 108 ~~V~v~GwV~~iR~~----g~~~Fi~l~Dgs~~~~lQ~v~~~~~~~~~~l~~~~l~~gs~V~V~G~v~~~~~~~~~~EL~ 183 (565)
T PLN02603 108 KTLNVMGWVRTLRAQ----SSVTFIEVNDGSCLSNMQCVMTPDAEGYDQVESGLITTGASVLVQGTVVSSQGGKQKVELK 183 (565)
T ss_pred CEEEEEEEEEEEEeC----CCeEEEEEECCCCCEeEEEEEECcHHHHHHHhhcCCCCCCEEEEEEEEEecCCCCccEEEE
Confidence 489999999987742 4689999999997 599988544 3444432 3778999999999987521 1236777
Q ss_pred EccccccHH
Q psy9396 1059 AEKIFDINV 1067 (1149)
Q Consensus 1059 ~~~i~~l~~ 1067 (1149)
++++.-+..
T Consensus 184 v~~i~vlg~ 192 (565)
T PLN02603 184 VSKIVVVGK 192 (565)
T ss_pred EeEEEEEEC
Confidence 777755543
No 129
>PRK05733 single-stranded DNA-binding protein; Provisional
Probab=87.71 E-value=4.1 Score=43.02 Aligned_cols=66 Identities=11% Similarity=0.188 Sum_probs=49.2
Q ss_pred ceEEEEEEEee-eEeeecCC-cEEEEEEEe--------------CCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEee
Q psy9396 986 SCTVSGIITEL-KLKTTYRG-KILIIVIDD--------------NSNSVEVIINNQLYEKNKNILKENELLIVSGKVLED 1049 (1149)
Q Consensus 986 ~v~v~G~I~~v-k~~~TK~G-~mafltleD--------------~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~ 1049 (1149)
.+.+.|.|..- ..+.|++| .++-++|.- .|..+.|++|-+.-+.+...|++|..|+|+|++..+
T Consensus 7 kV~LiGrlg~DPElr~t~nG~~va~fsVAv~~~~k~~~~Ge~~e~T~w~~Vv~fgk~Ae~v~~~l~KGs~V~VeGrLr~~ 86 (172)
T PRK05733 7 KVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQVYIEGKLQTR 86 (172)
T ss_pred EEEEEEEecCCCEEEECCCCCEEEEEEEEEcCccccCCCCcccccceEEEEEEehHHHHHHHHHhCCCCEEEEEEEEEeC
Confidence 56777877754 55567777 566444331 233589999999888899999999999999999976
Q ss_pred cc
Q psy9396 1050 RF 1051 (1149)
Q Consensus 1050 ~~ 1051 (1149)
.+
T Consensus 87 ~y 88 (172)
T PRK05733 87 EW 88 (172)
T ss_pred cE
Confidence 44
No 130
>KOG3108|consensus
Probab=87.66 E-value=1.1 Score=50.29 Aligned_cols=77 Identities=16% Similarity=0.205 Sum_probs=60.9
Q ss_pred ceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchHHHHH--HHhhccCCcEEEEEEEEEeeccCCceEEEEcccc
Q psy9396 986 SCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEK--NKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063 (1149)
Q Consensus 986 ~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~~y~~--~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~~~i~ 1063 (1149)
.|.+.|+|..+++..|+ ...+|+|.||++|+..|+..=.. ..+.+..+..|.+.|.+.. +.|..++.+.+|.
T Consensus 70 ~v~~VGivr~~e~~~t~----i~y~I~D~tg~id~r~W~~~~~~~~e~~~l~~~~yVkv~G~Lk~--f~Gk~sl~~fkI~ 143 (265)
T KOG3108|consen 70 AVSIVGIVRNIEKSATN----ITYEIEDGTGQIDVRQWFHDNAESEEMPALETGTYVKVYGHLKP--FQGKKSLQVFKIR 143 (265)
T ss_pred EEEEEEEEEeceecCcc----eEEEEecCcccEEEEEeccccchhhhCcccccCcEEEeeecccC--CCCceeEEEEeee
Confidence 67888888888777665 46899999999999999863222 3347889999999999975 5677888888888
Q ss_pred ccHHH
Q psy9396 1064 DINVA 1068 (1149)
Q Consensus 1064 ~l~~~ 1068 (1149)
|+++.
T Consensus 144 pv~D~ 148 (265)
T KOG3108|consen 144 PVEDF 148 (265)
T ss_pred eeecC
Confidence 87653
No 131
>TIGR00617 rpa1 replication factor-a protein 1 (rpa1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.04 E-value=1.8 Score=54.66 Aligned_cols=74 Identities=19% Similarity=0.285 Sum_probs=59.2
Q ss_pred cccccccCCCC-ceEEEEEEEeeeE---eeecCC--cEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEE-EEEEE
Q psy9396 975 PIYLSELKPTY-SCTVSGIITELKL---KTTYRG--KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIV-SGKVL 1047 (1149)
Q Consensus 975 ~~~i~~l~~~~-~v~v~G~I~~vk~---~~TK~G--~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v-~G~v~ 1047 (1149)
..+|++|.+.. ..+|-|.|+..-. ...++| ++.-+.|-|++|.|.+++|++.-++|.+.|++|.++.| .|+|.
T Consensus 180 ~~pI~~L~py~~~wtIkaRV~~Ks~ir~~~~~~gegkvfsv~L~Degg~Irat~f~~~~dkf~~~l~eG~VY~Is~~~Vk 259 (608)
T TIGR00617 180 VMPIASLSPYQNKWTIKARVTNKSEIRTWSNARGEGKLFNVELLDESGEIRATAFNEQADKFYDIIQEGKVYYISKGSLK 259 (608)
T ss_pred eEEHHHCCCCCCceEEEEEEEeccccceecCCCCCceeeEEEEecCCCeEEEEECchHHHHHhhhcccCCEEEECceEEE
Confidence 35788888865 7888888886544 444565 55668889999999999999999999999999999988 56665
Q ss_pred e
Q psy9396 1048 E 1048 (1149)
Q Consensus 1048 ~ 1048 (1149)
.
T Consensus 260 ~ 260 (608)
T TIGR00617 260 P 260 (608)
T ss_pred E
Confidence 3
No 132
>PLN02221 asparaginyl-tRNA synthetase
Probab=86.91 E-value=2 Score=53.41 Aligned_cols=79 Identities=16% Similarity=0.383 Sum_probs=57.7
Q ss_pred CceEEEEEEEeeeEeeecCCcEEEEEEEeCC--ceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeecc----CCceEEE
Q psy9396 985 YSCTVSGIITELKLKTTYRGKILIIVIDDNS--NSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRF----LKNIRIN 1058 (1149)
Q Consensus 985 ~~v~v~G~I~~vk~~~TK~G~mafltleD~t--g~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~----~~~~~ii 1058 (1149)
..|+|.|+|.++|... ++.++|+.|-|.+ |.+.+|+-.+.+. ....|..+.+|.|.|+|..+.. .+++.+.
T Consensus 51 ~~V~I~GWV~~iR~~G--k~~i~Fl~LRDgs~~g~iQvVv~~~~~~-~~~~L~~ES~V~V~G~V~~~~~~~~~~~~iEl~ 127 (572)
T PLN02221 51 QKVRIGGWVKTGREQG--KGTFAFLEVNDGSCPANLQVMVDSSLYD-LSTLVATGTCVTVDGVLKVPPEGKGTKQKIELS 127 (572)
T ss_pred CEEEEEEEEEehhhCC--CceEEEEEEeCCcccccEEEEEcCchhh-HHhcCCCceEEEEEEEEEeCCccCCCCccEEEE
Confidence 4899999999887632 1138999999999 8999988765432 2236788999999999986531 2357777
Q ss_pred EccccccH
Q psy9396 1059 AEKIFDIN 1066 (1149)
Q Consensus 1059 ~~~i~~l~ 1066 (1149)
++++.-+.
T Consensus 128 v~~i~vl~ 135 (572)
T PLN02221 128 VEKVIDVG 135 (572)
T ss_pred EeEEEEEe
Confidence 77665444
No 133
>PRK05813 single-stranded DNA-binding protein; Provisional
Probab=86.87 E-value=3.9 Score=44.85 Aligned_cols=81 Identities=17% Similarity=0.185 Sum_probs=59.2
Q ss_pred ceEEEEEEEe-eeEeeecCC-cEEEEEEEe-----CCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeeccC---C--
Q psy9396 986 SCTVSGIITE-LKLKTTYRG-KILIIVIDD-----NSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFL---K-- 1053 (1149)
Q Consensus 986 ~v~v~G~I~~-vk~~~TK~G-~mafltleD-----~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~~---~-- 1053 (1149)
.+.+.|-+.. ...+.|.+| .++-++|-- .+.-++|++|-+.-+... .+++|..|.|+|+++.+.+. +
T Consensus 111 ~V~LiGrL~~DPelR~t~~G~~va~f~lAvnr~~~~td~i~~v~wg~~Ae~~~-~l~KG~~V~V~GrL~sr~y~~k~g~~ 189 (219)
T PRK05813 111 EIFLDGYICKEPVYRTTPFGREIADLLLAVNRPYNKSDYIPCIAWGRNARFCK-TLEVGDNIRVWGRVQSREYQKKLSEG 189 (219)
T ss_pred EEEEEEEccCCCeEEECCCCCEEEEEEEEEcCCCCCceEEEEEEEhHHhHHHh-hCCCCCEEEEEEEEEecceEcCCCCc
Confidence 6788887774 456678889 788666553 257899999999776655 49999999999999976332 1
Q ss_pred ------ceEEEEccccccHH
Q psy9396 1054 ------NIRINAEKIFDINV 1067 (1149)
Q Consensus 1054 ------~~~ii~~~i~~l~~ 1067 (1149)
...++++++.-++.
T Consensus 190 ~g~kr~~~eV~v~~i~~l~~ 209 (219)
T PRK05813 190 EVVTKVAYEVSISKMEKVEK 209 (219)
T ss_pred cceEEEEEEEEEEEEEEcCC
Confidence 23567777766643
No 134
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=86.49 E-value=2.9 Score=57.28 Aligned_cols=91 Identities=24% Similarity=0.342 Sum_probs=71.5
Q ss_pred ccccccCCC-CceEEEEEEEeeeEeeecCC-cEEEEEEEeCCceEEEEEchHH--HHHHHhhccCCcEEEEEEEEEeecc
Q psy9396 976 IYLSELKPT-YSCTVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQL--YEKNKNILKENELLIVSGKVLEDRF 1051 (1149)
Q Consensus 976 ~~i~~l~~~-~~v~v~G~I~~vk~~~TK~G-~mafltleD~tg~ie~vvFp~~--y~~~~~~l~~~~~v~v~G~v~~~~~ 1051 (1149)
.++.++.+. +.|+|-|.|-.+..+.+|+| .+.-+.+.|.|+.+-+-.|-+. -......++.|..|.|+|+++.|.+
T Consensus 227 ~~~~~i~~~~~~v~i~G~if~~e~~~~k~~~~~~~~~~td~~~s~~~k~f~~~~~~~~~~~~~~~g~~v~~~g~~~~d~~ 306 (1437)
T PRK00448 227 TPMKEINEEERRVVVEGYVFKVEIKELKSGRHILTFKITDYTSSIIVKKFSRDKEDLKKFDEIKKGDWVKVRGSVQNDTF 306 (1437)
T ss_pred ccHHHhhccCCeEEEEEEEEEEEEEeccCCCEEEEEEEEcCCCCEEEEEEecCcchhHHHhcCCCCCEEEEEEEEeccCC
Confidence 456666544 48999999999999999999 4557888999999999999732 2233466899999999999999877
Q ss_pred CCceEEEEccccccH
Q psy9396 1052 LKNIRINAEKIFDIN 1066 (1149)
Q Consensus 1052 ~~~~~ii~~~i~~l~ 1066 (1149)
.+...+.++.+...+
T Consensus 307 ~~~~~~~~~~~~~~~ 321 (1437)
T PRK00448 307 TRDLVMNAQDINEIK 321 (1437)
T ss_pred CCceEEEeeeeeecC
Confidence 777888877765443
No 135
>PRK12366 replication factor A; Reviewed
Probab=84.72 E-value=3.9 Score=51.97 Aligned_cols=86 Identities=23% Similarity=0.377 Sum_probs=63.0
Q ss_pred cccccCCCCceEEEEEEEeeeEe---eecCCc---EEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeec
Q psy9396 977 YLSELKPTYSCTVSGIITELKLK---TTYRGK---ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDR 1050 (1149)
Q Consensus 977 ~i~~l~~~~~v~v~G~I~~vk~~---~TK~G~---mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~ 1050 (1149)
.|.++..+..+.|.|.|.++... .+|.|. .--++|.|.||.+.+++|.+.-+ ..+..|.+|.|+|.+.. .
T Consensus 177 ~I~el~~g~~v~v~G~V~~~~~~~~f~rkdg~~~~~r~~~l~D~TG~irvTlW~~~a~---~~~~~g~vv~i~g~~~~-~ 252 (637)
T PRK12366 177 DIPELEPNLSATIEGEVTKAYPIKEFTRKDGSEGKLKSFILKDDTGSIRVTLWNDLTD---IEVNKGDIVRVKGYVKQ-G 252 (637)
T ss_pred cccccCCCCeEEEEEEEEEccCcEEEEEcCCCeeEEEEEEEEcCCCcEEEEEEChhhc---ccCCCCCEEEEEeEEec-C
Confidence 45666665688899999987544 345662 34699999999999999997543 35789999999996654 3
Q ss_pred cCCceEEEEccccccH
Q psy9396 1051 FLKNIRINAEKIFDIN 1066 (1149)
Q Consensus 1051 ~~~~~~ii~~~i~~l~ 1066 (1149)
+++++.+.+.+...++
T Consensus 253 ~~~~~el~~~~~~~i~ 268 (637)
T PRK12366 253 YRTGLEISANNIEILE 268 (637)
T ss_pred cCCceEEEeCCceeec
Confidence 5577777776655444
No 136
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=84.64 E-value=1.1 Score=54.24 Aligned_cols=85 Identities=13% Similarity=0.241 Sum_probs=66.6
Q ss_pred ccccccCCC--CceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeeccCC
Q psy9396 976 IYLSELKPT--YSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLK 1053 (1149)
Q Consensus 976 ~~i~~l~~~--~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~~~ 1053 (1149)
+.+.++.+. ..|+|-|.|+.+|+.. | -..+||.|+||.+.+..|...=.+-..-++.|.+|-|.|.|+.+ +|
T Consensus 203 ~~i~~id~~ig~tV~I~GeV~qikqT~---G-PTVFtltDetg~i~aAAFe~aGvRAyP~IevGdiV~ViG~V~~r--~g 276 (715)
T COG1107 203 TLIDDLDEMIGKTVRIEGEVTQIKQTS---G-PTVFTLTDETGAIWAAAFEEAGVRAYPEIEVGDIVEVIGEVTRR--DG 276 (715)
T ss_pred ccHHHHHhhcCceEEEEEEEEEEEEcC---C-CEEEEEecCCCceehhhhccCCcccCCCCCCCceEEEEEEEeec--CC
Confidence 456666553 4899999999887643 5 45789999999999988876555666778999999999999975 58
Q ss_pred ceEEEEccccccH
Q psy9396 1054 NIRINAEKIFDIN 1066 (1149)
Q Consensus 1054 ~~~ii~~~i~~l~ 1066 (1149)
.+|+=+..+..|.
T Consensus 277 ~lQiE~~~me~L~ 289 (715)
T COG1107 277 RLQIEIEAMEKLT 289 (715)
T ss_pred cEEEeehhhHHhh
Confidence 8998887776653
No 137
>PF12228 DUF3604: Protein of unknown function (DUF3604); InterPro: IPR022028 This family of proteins is found in bacteria. Proteins in this family are typically between 621 and 693 amino acids in length.
Probab=84.62 E-value=0.67 Score=56.95 Aligned_cols=50 Identities=28% Similarity=0.391 Sum_probs=39.8
Q ss_pred ccccccccccCch----hhccccHHHHHHHHHHcC--------------CCEEEEecCCchhhHHHHH
Q psy9396 4 QFIHLRLHSEYSI----IDGLLRINDVIEAAANDY--------------QPALAITDLSNLFGIIKFY 53 (1149)
Q Consensus 4 ~fv~LHvHS~ySl----ldg~~~ieeLV~~Ake~G--------------~~AlAITDH~nl~G~~~f~ 53 (1149)
-|-|||+||.||+ ....++|++--+.||-.- ++-+|+|||....|.+...
T Consensus 7 yfGDlHlHT~~S~DA~~~G~~~~P~dAYRfAkGe~v~~~~G~~vqL~rPLDF~aVTDHaE~lG~~~~~ 74 (592)
T PF12228_consen 7 YFGDLHLHTSYSFDAYAFGNRLTPDDAYRFAKGEPVTHPSGQPVQLDRPLDFLAVTDHAEFLGEVRAC 74 (592)
T ss_pred cccccccccccccchhhccCCCCHHHHHHHhcCCcccCCCCCEeeeCCCcceeEEcccHhhhhhHHHH
Confidence 4779999999995 334678999999998432 4679999999998887653
No 138
>PRK07218 replication factor A; Provisional
Probab=83.97 E-value=5.5 Score=47.90 Aligned_cols=80 Identities=18% Similarity=0.181 Sum_probs=60.5
Q ss_pred ccccccCCCC-ceEEEEEEEee--eEeeecCC-c-EEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeec
Q psy9396 976 IYLSELKPTY-SCTVSGIITEL--KLKTTYRG-K-ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDR 1050 (1149)
Q Consensus 976 ~~i~~l~~~~-~v~v~G~I~~v--k~~~TK~G-~-mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~ 1050 (1149)
..|.++..+. .+.+.|.|.++ |...++.| . +.-+.|.|+||.+-+++|.+. .-+.+|..|.|.+-.-+ .
T Consensus 163 ~kI~DL~~g~~~V~v~g~Vl~~~~r~f~~~dg~~~v~~giigDeTG~Ir~tlW~~~-----~~l~~Gd~v~I~na~v~-e 236 (423)
T PRK07218 163 KKLIDLGPGDRGVNVEARVLELEHREIDGRDGETTILSGVLADETGRLPFTDWDPL-----PEIEIGASIRIEDAYVR-E 236 (423)
T ss_pred cchhhccCCCCceEEEEEEEEecceeEEcCCCCeEEEEEEEECCCceEEEEEeccc-----ccCCCCCEEEEeeeEEe-c
Confidence 3567777654 68888888877 44555667 3 556889999999999999973 24788999999876554 3
Q ss_pred cCCceEEEEcc
Q psy9396 1051 FLKNIRINAEK 1061 (1149)
Q Consensus 1051 ~~~~~~ii~~~ 1061 (1149)
++|.+++.+.+
T Consensus 237 ~~G~~elnv~~ 247 (423)
T PRK07218 237 FRGVPSVNVSE 247 (423)
T ss_pred cCCeEEEEECC
Confidence 67889998884
No 139
>PRK04036 DNA polymerase II small subunit; Validated
Probab=83.79 E-value=3.9 Score=50.54 Aligned_cols=73 Identities=19% Similarity=0.333 Sum_probs=51.3
Q ss_pred CCceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchHH--HHHHHhhccCCcEEEEEEEEEeeccCCceEEEEcc
Q psy9396 984 TYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQL--YEKNKNILKENELLIVSGKVLEDRFLKNIRINAEK 1061 (1149)
Q Consensus 984 ~~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~~--y~~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~~~ 1061 (1149)
+.++.|+|+|..++ .|++|. ..+.|||.||.+.+++-.+. +......+..|.+|.|.|+... ++..+.|++
T Consensus 153 ~~~~~viG~v~~~~--~~~~g~-~~~~LED~sgrv~l~~~~~~~~~~~~~~~lvtg~vv~v~G~~~~----~g~~f~v~~ 225 (504)
T PRK04036 153 GEEVSIIGMVSDIR--STKNGH-KIVELEDTTGTFPVLIMKDREDLAELADELLLDEVIGVEGTLSG----DGGLIFADE 225 (504)
T ss_pred CceEEEEEEEEEee--cccCCc-eEEEEECCCCeEEEEeecchhhhhhhhhcccCceEEEEEEEEcC----CCCEEEEEE
Confidence 34899999998664 567773 35899999999999764322 2223345788999999999753 333466776
Q ss_pred cc
Q psy9396 1062 IF 1063 (1149)
Q Consensus 1062 i~ 1063 (1149)
+.
T Consensus 226 i~ 227 (504)
T PRK04036 226 II 227 (504)
T ss_pred EE
Confidence 64
No 140
>PRK14699 replication factor A; Provisional
Probab=83.72 E-value=3.4 Score=50.59 Aligned_cols=84 Identities=12% Similarity=0.281 Sum_probs=60.2
Q ss_pred ccccccCCCC-ceEEEEEEEeeeEe---eecCC---cEEEEEEEeCCceEEEEEchHHHHHHHh-hccCCcEEEEEEEEE
Q psy9396 976 IYLSELKPTY-SCTVSGIITELKLK---TTYRG---KILIIVIDDNSNSVEVIINNQLYEKNKN-ILKENELLIVSGKVL 1047 (1149)
Q Consensus 976 ~~i~~l~~~~-~v~v~G~I~~vk~~---~TK~G---~mafltleD~tg~ie~vvFp~~y~~~~~-~l~~~~~v~v~G~v~ 1047 (1149)
..|+||.++. .+.+-|.|.++-.+ ..+.| +++-+++.|+||++.+++|.+.-..... -|++|.+|.|+|.+.
T Consensus 58 ~kI~di~~~~~~v~i~~rVl~i~~~r~f~r~dG~~g~v~~~~iaDeTG~ir~tlW~~~a~~~~~g~l~~GDvv~I~~~~r 137 (484)
T PRK14699 58 VKIENITPESGPVNFIARVVSVFDTKEFTRNDGTIGRVGNLIVGDETGKIKLTLWDNMADLIKAGKIKAGQTLQISGYAK 137 (484)
T ss_pred ccHhHccCCCceEEEEEEEEEecCceEEecCCCCceEEEEEEEecCCCeEEEEEecCccchhhhcCCCCCCEEEEcceec
Confidence 4678887764 78999998877433 23345 5678999999999999999976322332 388999999999864
Q ss_pred eeccCCceEEEEcc
Q psy9396 1048 EDRFLKNIRINAEK 1061 (1149)
Q Consensus 1048 ~~~~~~~~~ii~~~ 1061 (1149)
. .+ +++.+.+.+
T Consensus 138 ~-~~-~g~el~~~~ 149 (484)
T PRK14699 138 Q-GY-SGVEVNIGN 149 (484)
T ss_pred c-CC-CCceEEeCC
Confidence 3 33 446666653
No 141
>KOG3416|consensus
Probab=83.14 E-value=3.6 Score=40.60 Aligned_cols=80 Identities=14% Similarity=0.304 Sum_probs=55.5
Q ss_pred cccccCCCC-ceEEEEEEE-eeeEeeecCC-cEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeeccCC
Q psy9396 977 YLSELKPTY-SCTVSGIIT-ELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLK 1053 (1149)
Q Consensus 977 ~i~~l~~~~-~v~v~G~I~-~vk~~~TK~G-~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~~~ 1053 (1149)
.+.|+.++- ...+.-+|. --+..+||.| +.....+-|+||.+++-||. ....+++.|.++.++|-.-. -+++
T Consensus 6 ~ikdi~P~~kN~~v~fIvl~~g~~tkTkdg~~v~~~kVaD~TgsI~isvW~----e~~~~~~PGDIirLt~Gy~S-i~qg 80 (134)
T KOG3416|consen 6 FIKDIKPGLKNINVTFIVLEYGRATKTKDGHEVRSCKVADETGSINISVWD----EEGCLIQPGDIIRLTGGYAS-IFQG 80 (134)
T ss_pred hHhhcChhhhcceEEEEEEeeceeeeccCCCEEEEEEEecccceEEEEEec----CcCcccCCccEEEecccchh-hhcC
Confidence 456666642 333333344 4456699999 78888999999999999988 45778999999988776543 2445
Q ss_pred ceEEEEcc
Q psy9396 1054 NIRINAEK 1061 (1149)
Q Consensus 1054 ~~~ii~~~ 1061 (1149)
++.+-+-+
T Consensus 81 ~LtL~~GK 88 (134)
T KOG3416|consen 81 CLTLYVGK 88 (134)
T ss_pred ceEEEecC
Confidence 66655543
No 142
>PRK06386 replication factor A; Reviewed
Probab=82.76 E-value=6.3 Score=46.28 Aligned_cols=83 Identities=17% Similarity=0.193 Sum_probs=61.6
Q ss_pred ccccccCCCC-ceEEEEEEEee--eEeeecCC--cEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeec
Q psy9396 976 IYLSELKPTY-SCTVSGIITEL--KLKTTYRG--KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDR 1050 (1149)
Q Consensus 976 ~~i~~l~~~~-~v~v~G~I~~v--k~~~TK~G--~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~ 1050 (1149)
..|.||.++. .+.|.|.|..+ +...++.| ...-+.|.|+||++-++.|-+ .+.+|.++.|.+-+. +.
T Consensus 108 ~KI~DL~~g~~~v~V~akVle~~e~e~~~~g~~~~v~sg~lgDeTGrIr~TlW~~-------~l~eGd~v~i~na~v-~e 179 (358)
T PRK06386 108 VKIRDLSLVTPYVSVIGKITGITKKEYDSDGTSKIVYQGYIEDDTARVRISSFGK-------PLEDNRFVRIENARV-SQ 179 (358)
T ss_pred cEeEeccCCCCceEEEEEEEEccCceEecCCCccEEEEEEEEcCCCeEEEEEccc-------cccCCCEEEEeeeEE-Ec
Confidence 5788998764 56677777765 33443333 355899999999999999976 378899999988664 45
Q ss_pred cCCceEEEEccccccH
Q psy9396 1051 FLKNIRINAEKIFDIN 1066 (1149)
Q Consensus 1051 ~~~~~~ii~~~i~~l~ 1066 (1149)
++|.+++.+.+...++
T Consensus 180 ~~G~~el~v~~~t~I~ 195 (358)
T PRK06386 180 YNGYIEISVGNKSVIK 195 (358)
T ss_pred cCCeEEEEeCCeEEEE
Confidence 6888999887665553
No 143
>PRK07218 replication factor A; Provisional
Probab=82.51 E-value=13 Score=44.79 Aligned_cols=80 Identities=14% Similarity=0.221 Sum_probs=57.9
Q ss_pred ccccccCCCC-ceEEEEEEEeeeEe-eecCC---cEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeec
Q psy9396 976 IYLSELKPTY-SCTVSGIITELKLK-TTYRG---KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDR 1050 (1149)
Q Consensus 976 ~~i~~l~~~~-~v~v~G~I~~vk~~-~TK~G---~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~ 1050 (1149)
..|+||.++. .|.+.|.|.++-.+ .++.| .+.-+.+-|+||.+.+++|.+. -+++|.+|.|.+-.-+.
T Consensus 59 ~kI~Di~~~~~~V~v~~kVl~i~~rt~r~dg~~g~v~~~~igDeTG~Ir~tlW~~~------~l~~Gdvv~I~na~vre- 131 (423)
T PRK07218 59 KDIKELSTDDKNVTVTGRVLTIGERSIRYQGDDHVIYEGILADETGTISYTAWKDF------GLSPGDTVTIGNAGVRE- 131 (423)
T ss_pred ccHhhCCCCCceeEEEEEEEEecceeEecCCCceEEEEEEEECCCCeEEEEEECCC------CCCCCCEEEEeccEeec-
Confidence 4578887764 78888888877432 12334 4678999999999999999954 29999999998654433
Q ss_pred cCCceEEEEccc
Q psy9396 1051 FLKNIRINAEKI 1062 (1149)
Q Consensus 1051 ~~~~~~ii~~~i 1062 (1149)
+++.+++.+.+-
T Consensus 132 ~~g~~el~ig~~ 143 (423)
T PRK07218 132 WDGRPELNIGES 143 (423)
T ss_pred cCCceEEeccCc
Confidence 456677765443
No 144
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=82.45 E-value=5.3 Score=52.44 Aligned_cols=105 Identities=21% Similarity=0.253 Sum_probs=79.3
Q ss_pred cccccCCC-CceEEEEEEEeeeEeeecCC-cEEEEEEEeCCceEEEEEchHH--HHHHHhhccCCcEEEEEEEEEeeccC
Q psy9396 977 YLSELKPT-YSCTVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQL--YEKNKNILKENELLIVSGKVLEDRFL 1052 (1149)
Q Consensus 977 ~i~~l~~~-~~v~v~G~I~~vk~~~TK~G-~mafltleD~tg~ie~vvFp~~--y~~~~~~l~~~~~v~v~G~v~~~~~~ 1052 (1149)
++.++.+. .++.|-|+|-.++.+.+|+| ...-+.+-|.+.++-+-.|-+. -++.-..++.|..|.++|.|+.+.+.
T Consensus 231 ~~~~i~~~~~~v~v~G~IF~~e~~~~ksGr~l~~i~vTD~t~Sl~~k~f~~~~ed~~~~~~ik~g~wvk~~g~v~~d~f~ 310 (1444)
T COG2176 231 PLIKINEEETRVKVEGYIFKIEIKELKSGRTLLNIKVTDYTSSLILKKFLRDEEDEKKFDGIKKGMWVKARGNVQLDTFT 310 (1444)
T ss_pred ehhhccccccceEEEEEEEEEeeeecccCcEEEEEEEecCchheeehhhccccccHHHHhhcccCcEEEEEEEEEecccc
Confidence 33344333 36899999999999999999 4557899999998888888763 24455678999999999999998777
Q ss_pred CceEEEEccccccHHHHHh---cCcEEEEEec
Q psy9396 1053 KNIRINAEKIFDINVARIL---YGKKFSVMFN 1081 (1149)
Q Consensus 1053 ~~~~ii~~~i~~l~~~~~~---~~~~l~i~l~ 1081 (1149)
+.+.++++.|.++...... ..+.+.+.++
T Consensus 311 ~~l~m~i~~I~ei~~~~r~D~~~eKRVELh~H 342 (1444)
T COG2176 311 RDLTMIINDINEIENAKRKDLAKEKRVELHFH 342 (1444)
T ss_pred cceEEEhhhhhhhhcccccccCccceEEEEec
Confidence 7889999999888743221 1345666555
No 145
>PRK05813 single-stranded DNA-binding protein; Provisional
Probab=81.94 E-value=9.6 Score=41.83 Aligned_cols=83 Identities=19% Similarity=0.296 Sum_probs=61.4
Q ss_pred CCceEEEEEEE-eeeEeeecCC-cEEEEEE-----EeCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEE-eecc-CCc
Q psy9396 984 TYSCTVSGIIT-ELKLKTTYRG-KILIIVI-----DDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVL-EDRF-LKN 1054 (1149)
Q Consensus 984 ~~~v~v~G~I~-~vk~~~TK~G-~mafltl-----eD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~-~~~~-~~~ 1054 (1149)
++.|.++|-++ ...-..+..| .++.++| .|.+..+.+++|.++.+... ++.|..|.|+|+++ .++. +|.
T Consensus 8 ~NkV~L~Grl~~d~e~~~~~~G~~~~~f~laV~R~s~~~D~i~v~v~~rlae~~~--l~kG~~v~VeGqlrsy~~~~~G~ 85 (219)
T PRK05813 8 NNKVYLEGKVVSELEFSHEMYGEGFYNFKLEVPRLSDSKDILPVTVSERLLAGMD--LKVGTLVIVEGQLRSYNKFIDGK 85 (219)
T ss_pred cCEEEEEEEEcCCceEEEEeCCeEEEEEEEEeeccCCCccEEEEEEEhhhhhhhc--ccCCCEEEEEEEEEEeccCCCCc
Confidence 45788888777 3444557778 5554444 48899999999999999887 99999999999999 3223 342
Q ss_pred ----eEEEEccccccHHH
Q psy9396 1055 ----IRINAEKIFDINVA 1068 (1149)
Q Consensus 1055 ----~~ii~~~i~~l~~~ 1068 (1149)
+.+.|+++..++..
T Consensus 86 ~R~vl~V~a~~i~~l~~~ 103 (219)
T PRK05813 86 NRLILTVFARNIEYCDER 103 (219)
T ss_pred EEEEEEEEEEEEEEccCC
Confidence 46788888877653
No 146
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=81.39 E-value=7.4 Score=48.78 Aligned_cols=84 Identities=24% Similarity=0.327 Sum_probs=63.1
Q ss_pred ccccccCCCCceEEEEEEEeeeEeeecCC-cEEEEEEEeCCceEEEEEchHH-HHHHHhhccCCcEEEEEEEEEeeccCC
Q psy9396 976 IYLSELKPTYSCTVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQL-YEKNKNILKENELLIVSGKVLEDRFLK 1053 (1149)
Q Consensus 976 ~~i~~l~~~~~v~v~G~I~~vk~~~TK~G-~mafltleD~tg~ie~vvFp~~-y~~~~~~l~~~~~v~v~G~v~~~~~~~ 1053 (1149)
..+.++..+..+++-|.|.+..... .++ ++.-+++.|++|.+.+++|... |- ...++.|.-+.+.|+++. +++
T Consensus 52 ~~i~~~~~g~~vti~g~V~~~~~~~-~~~~~~l~v~~~d~~~~l~l~fFn~~~~l--~~~~~~G~~v~v~Gk~~~--~~~ 126 (677)
T COG1200 52 PGIAEARPGEIVTIEGTVLSHEKFP-FGKRKLLKVTLSDGTGVLTLVFFNFPAYL--KKKLKVGERVIVYGKVKR--FKG 126 (677)
T ss_pred CChhhcCCCceEEEEEEEEeeeccC-CCCCceEEEEEecCcEEEEEEEECccHHH--HhhCCCCCEEEEEEEEee--ccC
Confidence 4566666556889999998887765 434 5778999999999999999876 54 456899999999999986 345
Q ss_pred ceEEEEccccc
Q psy9396 1054 NIRINAEKIFD 1064 (1149)
Q Consensus 1054 ~~~ii~~~i~~ 1064 (1149)
+.++.--++..
T Consensus 127 ~~~~~hpe~~~ 137 (677)
T COG1200 127 GLQITHPEYIV 137 (677)
T ss_pred ceEEEcceEEe
Confidence 66655444433
No 147
>PRK14699 replication factor A; Provisional
Probab=81.23 E-value=4.9 Score=49.26 Aligned_cols=90 Identities=12% Similarity=0.188 Sum_probs=63.5
Q ss_pred ccccccCCCC-ceEEEEEEEeeeEee---ecCC---cEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEE-EEEE
Q psy9396 976 IYLSELKPTY-SCTVSGIITELKLKT---TYRG---KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVS-GKVL 1047 (1149)
Q Consensus 976 ~~i~~l~~~~-~v~v~G~I~~vk~~~---TK~G---~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~-G~v~ 1047 (1149)
..+.+|.++. .+.+-|.|.++-.++ .+.| ++.-+.+.|+||.+-+++|.+.- .+...|.+|.+|.|. |.+.
T Consensus 167 ~~I~dL~~~~~~V~i~gkVl~~~~~R~f~~~dG~~g~v~~~~igDeTG~ir~tlW~~~a-~~~~~l~~Gd~v~I~~a~vr 245 (484)
T PRK14699 167 QKIKDIKDGMGDLNLTGKVLEISEIRTFQRKDGTSGKVGNLLLGDETGTLRVTLWDDKT-DFLNQIEYGDTVELINAYAR 245 (484)
T ss_pred cchhhcCCCCCceEEEEEEEeccCceEEecCCCCceEEEEEEEEcCCceEEEEEECccc-ccccccCCCCEEEEecceEe
Confidence 3577777653 688888888775543 3566 46668999999999999999843 244458899988864 5465
Q ss_pred eeccCCceEEEEccccccH
Q psy9396 1048 EDRFLKNIRINAEKIFDIN 1066 (1149)
Q Consensus 1048 ~~~~~~~~~ii~~~i~~l~ 1066 (1149)
.+.+++++++.+.+...+.
T Consensus 246 ~~~~~~~~el~~~~~s~i~ 264 (484)
T PRK14699 246 ENAFTQKVELQVGNRSIIR 264 (484)
T ss_pred ecccCCceEEEecCceEee
Confidence 5555678888776655443
No 148
>cd04480 RPA1_DBD_A_like RPA1_DBD_A_like: A subgroup of uncharacterized plant OB folds with similarity to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of RPA is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change.
Probab=80.93 E-value=6.9 Score=36.13 Aligned_cols=55 Identities=22% Similarity=0.239 Sum_probs=40.4
Q ss_pred EEEEEeeeEeeec-CCcEEEEEEEeCCc-eEEEEEchHHHHHHHhhccCCcEEEEEE
Q psy9396 990 SGIITELKLKTTY-RGKILIIVIDDNSN-SVEVIINNQLYEKNKNILKENELLIVSG 1044 (1149)
Q Consensus 990 ~G~I~~vk~~~TK-~G~mafltleD~tg-~ie~vvFp~~y~~~~~~l~~~~~v~v~G 1044 (1149)
++.|..+=...+. .|.-.=+.|-|+.| .+.++++++.-++|.+.|++|+++.+++
T Consensus 3 ~Vrv~r~W~~~~~~~~~~~~miL~De~G~~I~a~i~~~~~~~f~~~L~eg~vy~is~ 59 (86)
T cd04480 3 CVRVLRLWDVYNNASGESLEMVLVDEKGNRIHATIPKRLAAKFRPLLKEGKWYTISN 59 (86)
T ss_pred EEEEEEEEcCcCCCCCcEEEEEEEcCCCCEEEEEECHHHHHhhhhhceeCCEEEEee
Confidence 3344444333333 45333466888999 9999999999999999999999999873
No 149
>PRK06386 replication factor A; Reviewed
Probab=80.72 E-value=9.2 Score=44.98 Aligned_cols=79 Identities=15% Similarity=0.209 Sum_probs=59.4
Q ss_pred ccccccCCCC-ceEEEEEEEee--eEeeecCC-cEE-EEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeec
Q psy9396 976 IYLSELKPTY-SCTVSGIITEL--KLKTTYRG-KIL-IIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDR 1050 (1149)
Q Consensus 976 ~~i~~l~~~~-~v~v~G~I~~v--k~~~TK~G-~ma-fltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~ 1050 (1149)
+.+.||.++. .+.+-|.|.++ |.+.+|.| .+. -..|-|+||.+-+++|.. ...+++|..+.+++-..+ .
T Consensus 3 ~kI~DI~~~~~~V~v~akVl~~~~r~i~~~~g~~~~~~gllgDeTG~I~fT~W~~-----~~~l~~Gd~v~i~na~v~-~ 76 (358)
T PRK06386 3 SKISDINAARQNVDLKVKVLSLNKRTIKNDRGETIYYYGIIGDETGTVPFTAWEF-----PDAVKSGDVIEIKYCYSK-E 76 (358)
T ss_pred cchhhcCCCCCcEEEEEEEEEccceEEecCCCCeEEEEEEEECCcceEEEEecCC-----cccCCCCCEEEEEeEEEe-e
Confidence 3577887764 67777777766 45678888 444 677999999999999984 346899999999876654 4
Q ss_pred cCCceEEEEc
Q psy9396 1051 FLKNIRINAE 1060 (1149)
Q Consensus 1051 ~~~~~~ii~~ 1060 (1149)
++|.+++.+.
T Consensus 77 ~~G~~~Lnv~ 86 (358)
T PRK06386 77 YNGKIRIYFD 86 (358)
T ss_pred ECCEEEEEEc
Confidence 6787777775
No 150
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.
Probab=78.63 E-value=7.7 Score=52.60 Aligned_cols=82 Identities=18% Similarity=0.256 Sum_probs=66.7
Q ss_pred CceEEEEEEEeeeEeeecCC-cEEEEEEEeCCceEEEEEchHHH--HHHHhhccCCcEEEEEEEEEeeccCCceEEEEcc
Q psy9396 985 YSCTVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLY--EKNKNILKENELLIVSGKVLEDRFLKNIRINAEK 1061 (1149)
Q Consensus 985 ~~v~v~G~I~~vk~~~TK~G-~mafltleD~tg~ie~vvFp~~y--~~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~~~ 1061 (1149)
+.++|-|.|-.+..+.+|+| ....+.+.|.|+++-+-.|-+.- ...-..+++|..|.|+|+++.|.+.+...+.++.
T Consensus 8 ~~~~~~g~i~~~~~~~~~~~~~~~~~~~~d~~~s~~~k~f~~~~~~~~~~~~~~~g~~~~~~g~~~~d~~~~~~~~~~~~ 87 (1213)
T TIGR01405 8 NRVKIEGYIFKIEIKELKSGRTLLKIKVTDYTDSLILKKFLKSEEDPEKFDGIKIGKWVRARGKIELDNFSRDLQMIIKD 87 (1213)
T ss_pred CeEEEEEEEEEEEeEeccCCCEEEEEEEEcCCCCEEEEEecccccchHHHhhcCCCcEEEEEEEEeccCCCCceEEEeee
Confidence 47899999999999999999 45578899999999999997422 2233568999999999999988777788888877
Q ss_pred ccccH
Q psy9396 1062 IFDIN 1066 (1149)
Q Consensus 1062 i~~l~ 1066 (1149)
+..+.
T Consensus 88 ~~~~~ 92 (1213)
T TIGR01405 88 IEEIP 92 (1213)
T ss_pred eeecC
Confidence 76553
No 151
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=77.29 E-value=6.6 Score=47.96 Aligned_cols=79 Identities=23% Similarity=0.330 Sum_probs=58.8
Q ss_pred CCceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchH----HHHHHHhhccCCcEEEEEEEEEeec--------c
Q psy9396 984 TYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQ----LYEKNKNILKENELLIVSGKVLEDR--------F 1051 (1149)
Q Consensus 984 ~~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~----~y~~~~~~l~~~~~v~v~G~v~~~~--------~ 1051 (1149)
+.+|+++|+|..+|.. |...|+.|-|.+|.+.+|+=|+ +|+... .+...-++.|+|+|..+. .
T Consensus 15 G~~V~L~GWV~r~Rd~----GgliFiDLRDr~GivQvv~~~~~~~~~~~~a~-~lr~E~vi~V~G~V~~R~e~~~N~~l~ 89 (585)
T COG0173 15 GQTVTLSGWVHRRRDH----GGLIFIDLRDREGIVQVVFDPEDSPEAFEVAS-RLRNEFVIQVTGTVRARPEGTINPNLP 89 (585)
T ss_pred CCEEEEEeeeeecccc----CCeEEEEcccCCCeEEEEECCccCHHHHHHHH-hcCceEEEEEEEEEEecCccccCCCCC
Confidence 3489999997644432 4589999999999999999983 565544 466677999999998752 1
Q ss_pred CCceEEEEccccccHH
Q psy9396 1052 LKNIRINAEKIFDINV 1067 (1149)
Q Consensus 1052 ~~~~~ii~~~i~~l~~ 1067 (1149)
.|.+.+.+++|.-|..
T Consensus 90 TGeiEv~a~~i~vln~ 105 (585)
T COG0173 90 TGEIEVLAEEIEVLNA 105 (585)
T ss_pred cceEEEEeeeEEEEec
Confidence 2456788888766653
No 152
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=76.64 E-value=10 Score=47.40 Aligned_cols=62 Identities=19% Similarity=0.293 Sum_probs=46.1
Q ss_pred CceEEEEEEEeeeEeeecCCcEEEEEEEeCCc--eEEEEEchH--HHHHHHhhccCCcEEEEEEEEEee
Q psy9396 985 YSCTVSGIITELKLKTTYRGKILIIVIDDNSN--SVEVIINNQ--LYEKNKNILKENELLIVSGKVLED 1049 (1149)
Q Consensus 985 ~~v~v~G~I~~vk~~~TK~G~mafltleD~tg--~ie~vvFp~--~y~~~~~~l~~~~~v~v~G~v~~~ 1049 (1149)
+.|+|.|+|.++|.... ++++|+.|.|.+| .+.+|+-.. .++... .+..+..|.|+|+|..+
T Consensus 82 ~~Vtl~GWv~~iR~~g~--~~~~Fv~lrDgsg~~~iQiVv~~~~~~~~~l~-~l~~gs~v~v~G~v~~~ 147 (586)
T PTZ00425 82 QIITVCGWSKAVRKQGG--GRFCFVNLNDGSCHLNLQIIVDQSIENYEKLL-KCGVGCCFRFTGKLIIS 147 (586)
T ss_pred CEEEEEEEEeehhhcCC--ceEEEEEEECCCCCcceEEEECCchHHHHHHh-cCCCccEEEEEEEEEcC
Confidence 37999999988775332 1599999999998 488877532 344332 36789999999999864
No 153
>PRK05853 hypothetical protein; Validated
Probab=74.07 E-value=16 Score=38.22 Aligned_cols=38 Identities=24% Similarity=0.223 Sum_probs=33.6
Q ss_pred CCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeecc
Q psy9396 1014 NSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRF 1051 (1149)
Q Consensus 1014 ~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~ 1051 (1149)
.+.-++|++|-+.-+.....|.+|..|+|+|++..+.+
T Consensus 41 ~T~wi~V~~wg~lAe~v~~~L~KG~~V~V~GrL~~~~w 78 (161)
T PRK05853 41 NSLFITVNCWGRLVTGVGAALGKGAPVIVVGHVYTSEY 78 (161)
T ss_pred CccEEEEEEEhHHHHHHHHHcCCCCEEEEEEEEEccce
Confidence 46789999999988889999999999999999997644
No 154
>KOG1885|consensus
Probab=73.61 E-value=9.5 Score=45.49 Aligned_cols=78 Identities=18% Similarity=0.277 Sum_probs=64.4
Q ss_pred ceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchH------HHHHHHhhccCCcEEEEEEEEEeeccCCceEEEE
Q psy9396 986 SCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQ------LYEKNKNILKENELLIVSGKVLEDRFLKNIRINA 1059 (1149)
Q Consensus 986 ~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~------~y~~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~ 1059 (1149)
.+.|+|-|.++|...+ +.+|.+|-++...+.+++-.+ .|+++...|+.|.+|-+.|.+-+.. .+.+++++
T Consensus 106 ~~svaGRI~s~R~sGs---KL~Fydl~~~g~klQvm~~~~~~~~~~~F~~~~~~lkrGDiig~~G~pgrt~-~gELSi~~ 181 (560)
T KOG1885|consen 106 IVSVAGRIHSKRESGS---KLVFYDLHGDGVKLQVMANAKKITSEEDFEQLHKFLKRGDIIGVSGYPGRTK-SGELSIIP 181 (560)
T ss_pred eeeeeeeEeeeeccCC---ceEEEEEecCCeEEEEEEehhhcCCHHHHHHHHhhhhccCEEeeecCCCcCC-CceEEEee
Confidence 6889999887765433 699999999988999988654 4788899999999999999998753 57899999
Q ss_pred ccccccHH
Q psy9396 1060 EKIFDINV 1067 (1149)
Q Consensus 1060 ~~i~~l~~ 1067 (1149)
+++.-|..
T Consensus 182 ~~~~lLsp 189 (560)
T KOG1885|consen 182 NEIILLSP 189 (560)
T ss_pred cchheecc
Confidence 99866643
No 155
>PRK07217 replication factor A; Reviewed
Probab=72.10 E-value=34 Score=39.39 Aligned_cols=84 Identities=10% Similarity=0.175 Sum_probs=63.1
Q ss_pred cccccCCCC-ceEEEEEEEeeeEeeecCCcEEE-EEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeeccCCc
Q psy9396 977 YLSELKPTY-SCTVSGIITELKLKTTYRGKILI-IVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKN 1054 (1149)
Q Consensus 977 ~i~~l~~~~-~v~v~G~I~~vk~~~TK~G~maf-ltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~~~~ 1054 (1149)
.|.||.... .|.|-|.|.++-.++. +.++. ..|.|+||.+-++.|.+. -...+++|..|.|.+-+.. .++|.
T Consensus 74 kI~Di~~~~~~VsV~aKVl~l~e~~~--~si~qvGllgDETG~IkfT~W~~s---~~~~leeGd~~rI~na~v~-ey~G~ 147 (311)
T PRK07217 74 NIADIDEPEQWVDVTAKVVQLWEPSS--DSIAQVGLLGDETGTIKFTKWAKS---DLPELEEGKSYLLKNVVTD-EYQGR 147 (311)
T ss_pred eeeecCCCCCcEEEEEEEEEecCCCC--CceEEEEEEEcCCceEEEEEccCC---CCCcccCCCEEEEEeEEEe-eECCE
Confidence 477887654 7999999987765442 34553 679999999999999863 1445889999999876654 57888
Q ss_pred eEEEEccccccH
Q psy9396 1055 IRINAEKIFDIN 1066 (1149)
Q Consensus 1055 ~~ii~~~i~~l~ 1066 (1149)
+++.+.+-..+.
T Consensus 148 ~~lnlg~~t~I~ 159 (311)
T PRK07217 148 FSVKLNRTTSIE 159 (311)
T ss_pred EEEEeCCceEEE
Confidence 999888765554
No 156
>KOG3818|consensus
Probab=67.15 E-value=35 Score=40.69 Aligned_cols=123 Identities=20% Similarity=0.285 Sum_probs=75.5
Q ss_pred hhcccccccccCCC---CceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEE
Q psy9396 971 RQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVL 1047 (1149)
Q Consensus 971 ~~~~~~~i~~l~~~---~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~ 1047 (1149)
.++..+++..|..+ +.+.+.|+++.. |.|+ ..+||.+|++++=+-. -+....+..+|-+|+++|..+
T Consensus 160 ~~fklt~ienLL~t~~~~~~lvLGlLTq~-----k~G~---~~lEDpsgsVqlDlsq--a~fh~glf~egC~VL~EG~f~ 229 (525)
T KOG3818|consen 160 KKFKLTPIENLLSTRALQSFLVLGLLTQL-----KEGK---FHLEDPSGSVQLDLSQ--AKFHHGLFCEGCFVLVEGTFE 229 (525)
T ss_pred cccceeEHHHhhccccccceeeeehhhhc-----cCCc---EEEeCCCCcEEEeecc--cccccceeccceEEEEeeeee
Confidence 34445666666543 278999998844 5564 6799999999876544 333456778999999999986
Q ss_pred eeccCCceEEEEccccccH------------------------------HHHHhcCcEEEEEec-----CcchHHHHHHH
Q psy9396 1048 EDRFLKNIRINAEKIFDIN------------------------------VARILYGKKFSVMFN-----RTFNISILKKI 1092 (1149)
Q Consensus 1048 ~~~~~~~~~ii~~~i~~l~------------------------------~~~~~~~~~l~i~l~-----~~~~l~~l~~i 1092 (1149)
. +..++..--.-|.+ .+.++....-++-++ +.+.+.+|..+
T Consensus 230 ~----~vf~V~~lg~PP~E~~~~tr~~~gN~n~~Gg~~~~~~k~sA~L~~lE~~~~d~~fVfLSdV~LD~~~vm~aL~ki 305 (525)
T KOG3818|consen 230 S----GVFHVNELGFPPVERREVTRKELGNLNWLGGDSKIAFKCSARLRSLEAENTDTSFVFLSDVFLDDKKVMEALRKI 305 (525)
T ss_pred c----ceEEEeeccCCCCCcchhHHHHhccCcccCCcchhhhHHHHHHHHHHHhCcCceEEEEehhccccHHHHHHHHHH
Confidence 3 33333222222221 111122223333333 22679999999
Q ss_pred HHhcCCCCCccEEEEEE
Q psy9396 1093 LLRFKCKNGLPFVLYYC 1109 (1149)
Q Consensus 1093 l~~~~G~G~~~V~l~~~ 1109 (1149)
++.|.. .-|+-+.+.
T Consensus 306 fqgy~~--~pP~~iIlc 320 (525)
T KOG3818|consen 306 FQGYKD--APPTAIILC 320 (525)
T ss_pred HhhccC--CCCeEEEEe
Confidence 999985 556666665
No 157
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=65.32 E-value=16 Score=41.16 Aligned_cols=64 Identities=16% Similarity=0.188 Sum_probs=46.3
Q ss_pred CCCccccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhC-CCeeEeee
Q psy9396 1 MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNK-GIKPIIGC 67 (1149)
Q Consensus 1 m~~~fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~-GIKpIiG~ 67 (1149)
|.+.++|-|||=+++-.++ ..++++++|++.|...+.++=. +...+.+..+.|+++ +|.+.+|+
T Consensus 1 ~~~~~iD~HcHl~~~~~~~--~~~~~l~~a~~~gv~~~~~~~~-~~~~~~~~~~l~~~~~~v~~~~Gi 65 (258)
T PRK11449 1 MICRFIDTHCHFDFPPFSG--DEEASLQRAAQAGVGKIIVPAT-EAENFARVLALAERYQPLYAALGL 65 (258)
T ss_pred CCceEEEeccCCCChhhcc--CHHHHHHHHHHCCCCEEEEeeC-CHHHHHHHHHHHHhCCCEEEEEee
Confidence 6677999999987653333 7899999999999988776432 466667777788775 35555453
No 158
>COG0629 Ssb Single-stranded DNA-binding protein [DNA replication, recombination, and repair]
Probab=64.82 E-value=16 Score=38.43 Aligned_cols=38 Identities=24% Similarity=0.461 Sum_probs=33.9
Q ss_pred CCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeecc
Q psy9396 1014 NSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRF 1051 (1149)
Q Consensus 1014 ~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~ 1051 (1149)
.+.-+.|++|-++.+.....+++|..|+|+|+++.+.+
T Consensus 49 ~t~~~~vv~wgk~Ae~~~~yl~KG~~V~VeG~l~~~~~ 86 (167)
T COG0629 49 ETDWIRVVIWGKLAENAAEYLKKGSLVYVEGRLQTRKW 86 (167)
T ss_pred ccceEEEEEehHHHHHHHHHhcCCCEEEEEEEEEeeee
Confidence 34679999999999999999999999999999997643
No 159
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=63.73 E-value=5.1 Score=37.39 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=28.6
Q ss_pred cccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchhhH
Q psy9396 7 HLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGI 49 (1149)
Q Consensus 7 ~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~G~ 49 (1149)
-.|-|+.+|- ---|-+-.|+.+|++.| .||| ++||.
T Consensus 53 IVHgH~a~S~-----l~hE~i~hA~~mGlktV-fTDH-SLfgf 88 (90)
T PF08288_consen 53 IVHGHQAFST-----LCHEAILHARTMGLKTV-FTDH-SLFGF 88 (90)
T ss_pred EEEeehhhhH-----HHHHHHHHHHhCCCcEE-eecc-ccccc
Confidence 3699999993 34568889999999865 7999 57775
No 160
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=62.74 E-value=15 Score=41.05 Aligned_cols=61 Identities=16% Similarity=0.159 Sum_probs=47.4
Q ss_pred cccccccCchhhccccHHHHHHHHHHcCCCEEEEecC--CchhhHHHHHHHHHhCCCeeEeeeee
Q psy9396 7 HLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDL--SNLFGIIKFYKSAYNKGIKPIIGCDV 69 (1149)
Q Consensus 7 ~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH--~nl~G~~~f~~~ak~~GIKpIiG~Ei 69 (1149)
.+|+++.||. -...++++++.+++.|.+++.+=|- ...--..++.+.|+++|+++++-+.-
T Consensus 76 Pl~lM~y~n~--~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p 138 (244)
T PRK13125 76 PIILMTYLED--YVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSP 138 (244)
T ss_pred CEEEEEecch--hhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECC
Confidence 5678899994 3678999999999999999999651 11234568899999999999664443
No 161
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A ....
Probab=62.17 E-value=12 Score=32.20 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=24.5
Q ss_pred ccccCCccHHHHHHHHHHHhcCCCCCHHHHHhh
Q psy9396 835 LGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKR 867 (1149)
Q Consensus 835 l~~Ikgvg~~~~~~i~~~r~~g~f~~~~df~~r 867 (1149)
|..|+|||+..++.+.+. | |.|+.|+..-
T Consensus 7 L~~I~Gig~~~a~~L~~~---G-~~t~~~l~~a 35 (60)
T PF14520_consen 7 LLSIPGIGPKRAEKLYEA---G-IKTLEDLANA 35 (60)
T ss_dssp HHTSTTCHHHHHHHHHHT---T-CSSHHHHHTS
T ss_pred hccCCCCCHHHHHHHHhc---C-CCcHHHHHcC
Confidence 568999999999999864 5 9999999764
No 162
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=60.63 E-value=14 Score=36.69 Aligned_cols=46 Identities=33% Similarity=0.528 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCCcccCCCcchhHHHHHHHhcCC
Q psy9396 323 YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSIT 379 (1149)
Q Consensus 323 ~~~Rl~~EL~vI~~~gf~~YFLiv~D~v~~ak~~gi~vGpGRGSaagSlVaY~LgIT 379 (1149)
..+|-+.==+.|++.||.+-+|.|. ||. ||-|+-.||++|++||++
T Consensus 58 ~~~k~~~~~~~i~kyg~~GL~lFVa----------IPl-P~TG~wtgal~a~llg~~ 103 (121)
T PF06695_consen 58 LEKKAEKKSKKIEKYGFWGLALFVA----------IPL-PGTGAWTGALIASLLGMD 103 (121)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHh----------CCC-CcchHHHHHHHHHHhCCC
Confidence 4455555556889999999999884 998 999999999999999986
No 163
>PHA01083 hypothetical protein
Probab=58.54 E-value=5.8 Score=40.43 Aligned_cols=77 Identities=16% Similarity=0.290 Sum_probs=52.2
Q ss_pred HHHHHHhcCCCHHHHHHHHcc----CCCCCCCCcchHHHhhhChH-----HHHHhhccHHHHH-HHHHHHHcccc-cCCc
Q psy9396 444 IRDVGRVLDLRYSFCDSISKL----IPFKPGKLITLSNAIKEEPQ-----LAERIKNEEEVRQ-LIELAKQVEGI-IRNV 512 (1149)
Q Consensus 444 irdv~r~lg~~~~~~~~i~k~----ip~~~~~~~~l~~a~~~~~~-----l~~~~~~~~~~~~-l~~~a~~leGl-~r~~ 512 (1149)
-+.+|+.||++...+..+.+- +|.... +-|.+....+|+ +..-..++|+.+. |-.+++++.|+ -+..
T Consensus 19 dkqLA~~LGVs~q~IS~~R~G~r~~i~de~A--~~LAe~aGiDp~eall~i~aDraetp~~kalWesIaKKlnglgl~~i 96 (149)
T PHA01083 19 YKQIAHDLGVSPQKISKMRTGVRTYISDEEA--IFLAESAGIDPEIALLGCHADRNENPRAKAIWESIAKKQNGLGLRTI 96 (149)
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCCCCCHHHH--HHHHHHhCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhHH
Confidence 467899999999999998876 222211 234455555654 1112235666666 77899999998 5788
Q ss_pred cccccEEEEc
Q psy9396 513 GMHAGGVLIA 522 (1149)
Q Consensus 513 ~~HaaGvvIs 522 (1149)
|+-|||+.++
T Consensus 97 sm~c~g~a~~ 106 (149)
T PHA01083 97 SMLCGGLAVS 106 (149)
T ss_pred HHHHhhHHHH
Confidence 9999998543
No 164
>TIGR00617 rpa1 replication factor-a protein 1 (rpa1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=57.90 E-value=31 Score=43.70 Aligned_cols=71 Identities=17% Similarity=0.212 Sum_probs=49.4
Q ss_pred ccccccCCC---CceEEEEEEEeeeE---eeecC-C-cE--EEEEEEeCCc-eEEEEEchHHHHHHHhhccCCcEEEEEE
Q psy9396 976 IYLSELKPT---YSCTVSGIITELKL---KTTYR-G-KI--LIIVIDDNSN-SVEVIINNQLYEKNKNILKENELLIVSG 1044 (1149)
Q Consensus 976 ~~i~~l~~~---~~v~v~G~I~~vk~---~~TK~-G-~m--afltleD~tg-~ie~vvFp~~y~~~~~~l~~~~~v~v~G 1044 (1149)
+++++|... ..+-|+|+|+++.. +++|+ | +. --++|.|.+| .+++++|.+....+. ..++.++.++|
T Consensus 299 ~~i~dI~~~~~~~~VDVIGvV~~v~~~~~i~~k~~g~~~~kR~i~L~D~sg~sI~vTLWG~~A~~~~--~~~~~Vva~kg 376 (608)
T TIGR00617 299 VKIDDIGGYEGNSLVDVIGIVQSVSPTQTITSRKNNKEFPKRDITLVDDSGKSVRVTLWGDDATKFD--VSVQPVIAIKG 376 (608)
T ss_pred eEHHHhhhhcCCCCccEEEEEeEecCceEEEEcCCCCeeeeEEEEEEeCCCCEEEEEEEhhhhhhcC--CCCCCEEEEEe
Confidence 445555432 26778999998744 44453 4 33 3699999999 699999999887775 56778888886
Q ss_pred EEEe
Q psy9396 1045 KVLE 1048 (1149)
Q Consensus 1045 ~v~~ 1048 (1149)
-.-.
T Consensus 377 ~~V~ 380 (608)
T TIGR00617 377 VRVS 380 (608)
T ss_pred EEEE
Confidence 4433
No 165
>COG3390 Uncharacterized protein conserved in archaea [Function unknown]
Probab=56.61 E-value=51 Score=35.07 Aligned_cols=61 Identities=20% Similarity=0.125 Sum_probs=48.0
Q ss_pred ceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEE---EEchHHHHHHHhhccCCcEEEEEEEEEe
Q psy9396 986 SCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV---IINNQLYEKNKNILKENELLIVSGKVLE 1048 (1149)
Q Consensus 986 ~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~---vvFp~~y~~~~~~l~~~~~v~v~G~v~~ 1048 (1149)
++.|+|.+++..-+-+-+ .|+-+++.|.||.+=+ -.+|+..+- -+.+..+..|.|.||+..
T Consensus 47 RifivGtltek~~i~ed~-~~~R~rVvDpTGsF~Vyag~yqPEa~a~-l~~ve~~~~VaViGKi~~ 110 (196)
T COG3390 47 RIFIVGTLTEKEGIGEDR-EYWRIRVVDPTGSFYVYAGQYQPEAKAF-LEDVEVPDLVAVIGKIRT 110 (196)
T ss_pred EEEEEEEEEeccCcCCcc-cEEEEEEecCCceEEEEcCCCChHHHHH-HHhccCCceEEEecccce
Confidence 678999999877665543 5999999999998876 456777654 456778889999999985
No 166
>PLN02532 asparagine-tRNA synthetase
Probab=55.82 E-value=21 Score=45.05 Aligned_cols=62 Identities=18% Similarity=0.299 Sum_probs=46.1
Q ss_pred CcEEEEEEEeCCce--EEEEEchHHHHHHHhhccCCcEEEEEEEEEeecc---CCceEEEEccccccH
Q psy9396 1004 GKILIIVIDDNSNS--VEVIINNQLYEKNKNILKENELLIVSGKVLEDRF---LKNIRINAEKIFDIN 1066 (1149)
Q Consensus 1004 G~mafltleD~tg~--ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~---~~~~~ii~~~i~~l~ 1066 (1149)
|+++|+.|.|.||. +.+|+..+.- .....|..+.+|.|+|+|..+.. .+++.+.++++.-+.
T Consensus 133 g~i~FI~LrDGSg~~~lQvVv~~~~~-~~~~~L~~Es~V~V~G~V~~~~~~~~~g~iEl~v~~i~VLg 199 (633)
T PLN02532 133 PSVAYLLISDGSCVASLQVVVDSALA-PLTQLMATGTCILAEGVLKLPLPAQGKHVIELEVEKILHIG 199 (633)
T ss_pred CCcEEEEEECCCCccceEEEEeCCcc-cHhhcCCCceEEEEEEEEEecCCCCCCCcEEEEeeEEEEEe
Confidence 46999999999998 9998875421 22357888999999999987622 345677777765544
No 167
>PRK07228 N-ethylammeline chlorohydrolase; Provisional
Probab=55.77 E-value=19 Score=43.61 Aligned_cols=66 Identities=17% Similarity=0.312 Sum_probs=45.7
Q ss_pred CCccccccccccCchhhcc--------------------ccHHHHHHHHH-------HcCCCEEEEecCCchhhHHHHHH
Q psy9396 2 IPQFIHLRLHSEYSIIDGL--------------------LRINDVIEAAA-------NDYQPALAITDLSNLFGIIKFYK 54 (1149)
Q Consensus 2 ~~~fv~LHvHS~ySlldg~--------------------~~ieeLV~~Ak-------e~G~~AlAITDH~nl~G~~~f~~ 54 (1149)
.|.||+.|+|...|++.|. .+++++...|. ..|..++. ||.+.+......+
T Consensus 55 lPGlId~H~H~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~L~~GvTtv~--d~~~~~~~~~~~~ 132 (445)
T PRK07228 55 IPGLIQGHIHLCQTLFRGIADDLELLDWLKDRIWPLEAAHDAESMYYSALLGIGELIESGTTTIV--DMESVHHTDSAFE 132 (445)
T ss_pred ecCEEecccCCccccceeccCCCCHHHHHHhhhhhhhhhCCHHHHHHHHHHHHHHHHhcCceEEE--ccccccChHHHHH
Confidence 3579999999988765332 24445555555 77887665 8876655566677
Q ss_pred HHHhCCCeeEeeeee
Q psy9396 55 SAYNKGIKPIIGCDV 69 (1149)
Q Consensus 55 ~ak~~GIKpIiG~Ei 69 (1149)
++.+.|++.+.|.++
T Consensus 133 a~~~~g~r~~~~~~~ 147 (445)
T PRK07228 133 AAGESGIRAVLGKVM 147 (445)
T ss_pred HHHHcCCeEEEecce
Confidence 888889888777554
No 168
>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.
Probab=55.22 E-value=31 Score=41.26 Aligned_cols=103 Identities=12% Similarity=0.121 Sum_probs=55.1
Q ss_pred CccccccccccCch-hhcc--ccHHHHHHHHHHcCCCEEEEecCCchhh-------HHHHHHHHHhCCCeeEeeeeeeec
Q psy9396 3 PQFIHLRLHSEYSI-IDGL--LRINDVIEAAANDYQPALAITDLSNLFG-------IIKFYKSAYNKGIKPIIGCDVWIT 72 (1149)
Q Consensus 3 ~~fv~LHvHS~ySl-ldg~--~~ieeLV~~Ake~G~~AlAITDH~nl~G-------~~~f~~~ak~~GIKpIiG~Ei~v~ 72 (1149)
|-|+|.|+|..... .++. .+++--+..+-+.|..++. |.....+ ...-.++....||.-..+.-.+-.
T Consensus 56 PGlID~HvH~~~gg~~~~~~~~~~e~~~~e~l~~GvTTv~--d~~g~~~~~~~~~~~~a~~~al~~~Gir~~~~~g~~~~ 133 (389)
T TIGR01975 56 PGFIDQHVHIIGGGGEGGPTTRTPELTLSDITKGGVTTVV--GLLGTDGITRHMESLLAKARALEEEGISCYMLTGAYHV 133 (389)
T ss_pred cCEeehhhccccccccCCCccCCHHHHHHHHHhCCcEEEe--cCcccCccccChhhHHHHHHHHHHhCCEEEEEcccccC
Confidence 56999999975421 1222 4566556777888999886 5321111 112233344567777666555411
Q ss_pred cc------ccCC--CCccEE-----EEEc---ccHHHHHHHHHHHHHHHhh
Q psy9396 73 NE------IENK--KPSRLL-----LLVK---NNNGYLQLCELLSKAYIEN 107 (1149)
Q Consensus 73 ~~------~~~~--~~~hll-----lLAk---N~~Gy~nL~kL~S~~~~~~ 107 (1149)
+. ...+ -.-.++ .++. ++.+++.|.++.+.++.-+
T Consensus 134 p~~t~t~~~~~d~~~~d~iiG~~~ia~sd~r~~~~~~~~l~~~~~~~~~~g 184 (389)
T TIGR01975 134 PSRTITGSVESDLLLIDKVIGVGEIAISDHRSAQPTVEHLTNMAAEARVGG 184 (389)
T ss_pred CCcccccchhhheeeehhhcccceEEEccCcCCCCCHHHHHHHHHHHHHHH
Confidence 00 0000 000111 1111 4578899999999887654
No 169
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ]. The HhH motif is similar to, but distinct from, the HtH motif. Both of these motifs have two helices connected by a short turn. In the HtH motif the second helix binds to DNA with the helix in the major groove. This allows the contact between specific base and residues throughout the protein. In the HhH motif the second helix does not protrude from the surface of the protein and therefore cannot lie in the major groove of the DNA. Crystallographic studies suggest that the interaction of the HhH domain with DNA is mediated by amino acids located in the strongly conserved loop (L-P-G-V) and at the N-terminal end of the second helix []. This interaction could involve the formation of hydrogen bonds between protein backbone nitrogens and DNA phosphate groups []. The structural difference between the HtH and HhH domains is reflected at the functional level: whereas the HtH domain, found primarily in gene regulatory proteins, binds DNA in a sequence specific manner, the HhH domain is rather found in proteins involved in enzymatic activities and binds DNA with no sequence specificity []. The HhH domain of DisA, a bacterial checkpoint control protein, is a DNA-binding domain [].; GO: 0003677 DNA binding; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 1Z00_A 2A1J_B 1KEA_A 1VRL_A 1RRQ_A 3G0Q_A ....
Probab=53.03 E-value=8.6 Score=28.65 Aligned_cols=18 Identities=33% Similarity=0.481 Sum_probs=14.9
Q ss_pred cccccCCccHHHHHHHHH
Q psy9396 834 GLGAIKGTGKSTIEAIVT 851 (1149)
Q Consensus 834 gl~~Ikgvg~~~~~~i~~ 851 (1149)
-|..|+|||+.+|+.|++
T Consensus 12 eL~~lpGIG~~tA~~I~~ 29 (30)
T PF00633_consen 12 ELMKLPGIGPKTANAILS 29 (30)
T ss_dssp HHHTSTT-SHHHHHHHHH
T ss_pred HHHhCCCcCHHHHHHHHh
Confidence 478899999999999975
No 170
>PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif). Analysis of the predicted nucleotide-binding site of the OB-fold suggests that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localise to the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesised for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the OB-fold ligand-binding site may be associated with the presence of members in mobile genetic elements and their potential role in bacterial pathogenicity [].; PDB: 1NNX_A.
Probab=50.51 E-value=35 Score=33.05 Aligned_cols=68 Identities=19% Similarity=0.362 Sum_probs=46.3
Q ss_pred CCceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeeccCCceEEEEccc
Q psy9396 984 TYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062 (1149)
Q Consensus 984 ~~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~~~i 1062 (1149)
+..|++-|.|+..- ++. -..+.|.||+|.+-|=++.|. ..-+..+..|.|.|+|+.+. ....|=|++|
T Consensus 34 d~~V~L~G~Iv~~l-----~~d--~Y~F~D~TG~I~VeId~~~w~--g~~vt~~~~Vri~GeVDk~~--~~~~IdV~~I 101 (103)
T PF04076_consen 34 DTPVTLEGNIVKQL-----GDD--KYLFRDATGEIEVEIDDDVWR--GQTVTPDDKVRISGEVDKDW--NKTEIDVDRI 101 (103)
T ss_dssp SEEEEEEEEEEEEE-----ETT--EEEEEETTEEEEEE--GGGST--T----TTSEEEEEEEEEEET--TEEEEEEEEE
T ss_pred CCeEEEEEEEEEEe-----cCC--EEEEECCCCcEEEEEChhhcC--CcccCCCCEEEEEEEEeCCC--CceEEEEEEE
Confidence 34888889887421 121 256789999999999999988 45578889999999999753 4567766665
No 171
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=49.34 E-value=9.6 Score=45.45 Aligned_cols=33 Identities=39% Similarity=0.558 Sum_probs=30.8
Q ss_pred ccccCCccHHHHHHHHHHHhcCCCCCHHHHHhhccc
Q psy9396 835 LGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDK 870 (1149)
Q Consensus 835 l~~Ikgvg~~~~~~i~~~r~~g~f~~~~df~~r~~~ 870 (1149)
|.+|+|||.+++.+|+.+| ||+|.+||++.+..
T Consensus 518 l~~ipgig~~~~~~I~~~R---p~~s~e~~l~~v~~ 550 (560)
T COG1031 518 LRAIPGIGKKTLRKILAER---PFKSSEEFLKLVPD 550 (560)
T ss_pred HHhcccchhhhHHHHHhcC---CccchHHHHhccCc
Confidence 7899999999999999999 99999999999864
No 172
>PF02721 DUF223: Domain of unknown function DUF223; InterPro: IPR003871 The function of this domain has not been characterised, but may be involved in nucleic acid or nucleotide binding.
Probab=47.70 E-value=38 Score=31.96 Aligned_cols=35 Identities=29% Similarity=0.445 Sum_probs=31.2
Q ss_pred EEEEeCCc-eEEEEEchHHHHHHHhhccCCcEEEEE
Q psy9396 1009 IVIDDNSN-SVEVIINNQLYEKNKNILKENELLIVS 1043 (1149)
Q Consensus 1009 ltleD~tg-~ie~vvFp~~y~~~~~~l~~~~~v~v~ 1043 (1149)
+.|.|+.| .|+++|..+...+|++.|++|..+.++
T Consensus 2 mvL~De~G~~I~A~I~~~~~~~f~~~l~Eg~~y~i~ 37 (95)
T PF02721_consen 2 MVLVDEKGDKIQATIPKELVDKFKDSLKEGSWYTIS 37 (95)
T ss_pred EEEEecCCCEEEEEECHHHHHHHHhhcccCCEEEeE
Confidence 45778888 999999999999999999999988875
No 173
>PRK10812 putative DNAse; Provisional
Probab=47.66 E-value=47 Score=37.59 Aligned_cols=60 Identities=15% Similarity=0.132 Sum_probs=41.7
Q ss_pred cccccccccc---CchhhccccHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhC-CCeeEee
Q psy9396 4 QFIHLRLHSE---YSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNK-GIKPIIG 66 (1149)
Q Consensus 4 ~fv~LHvHS~---ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~-GIKpIiG 66 (1149)
+++|-|||=. |+-. ....++++++|++.|...+.++=. +.-.+.+..+.|+++ +|.+-+|
T Consensus 2 ~~iDtH~Hl~~~~~~~~--~~d~~~vl~~a~~~gv~~~~~~~~-~~~~~~~~~~l~~~~~~v~~~~G 65 (265)
T PRK10812 2 FLVDSHCHLDGLDYQSL--HKDVDDVLAKAAARDVKFCLAVAT-TLPGYRHMRDLVGERDNVVFSCG 65 (265)
T ss_pred ceEEeccCCCCccchhh--hcCHHHHHHHHHHcCCCEEEEeCC-CHHHHHHHHHHHhhCCCeEEEEE
Confidence 4889999975 3322 247899999999999988765432 355566777778776 4555444
No 174
>cd04481 RPA1_DBD_B_like RPA1_DBD_B_like: A subgroup of uncharacterized, plant OB folds with similarity to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-B, RPA1 contains three other OB folds: DBD-A, DBD-C, and RPA1N. The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B. RPA1 DBD-C is involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change.
Probab=47.52 E-value=1.7e+02 Score=28.03 Aligned_cols=64 Identities=14% Similarity=0.101 Sum_probs=40.4
Q ss_pred EEEEEEeeeEe---eecCC-c--EEEEEEEeCCc-eEEEEEchHHHHHHHhhc----cCCcEEEEEEEEEeeccCC
Q psy9396 989 VSGIITELKLK---TTYRG-K--ILIIVIDDNSN-SVEVIINNQLYEKNKNIL----KENELLIVSGKVLEDRFLK 1053 (1149)
Q Consensus 989 v~G~I~~vk~~---~TK~G-~--mafltleD~tg-~ie~vvFp~~y~~~~~~l----~~~~~v~v~G~v~~~~~~~ 1053 (1149)
++|+|+++... .+| | . .--++|.|.++ .+++++|-+.-..+.... ..+.+|.|.+-....++.|
T Consensus 2 viG~i~~v~~~~~~~~~-~~~~~kr~~~i~D~~~~~l~~tlwG~~A~~f~~~~~~~~~~~~VVav~~~~rV~~~~g 76 (106)
T cd04481 2 VIGVIVDVGPLEELPPV-NKPSRKLDFEIRDLSDERLKCTLWGEYAEEFDAKFQSAGNGEPVVAVLRFWKIKEYKG 76 (106)
T ss_pred eeEEEEEecceEecccC-CccceEEEEEEEeCCCCEEEEEEEHHHHHHHHHHHHHhCCCCcEEEEEEeEEEEEEcC
Confidence 56777777443 444 4 2 34688999996 999999998777776554 3455555544233333444
No 175
>KOG3056|consensus
Probab=47.46 E-value=61 Score=39.88 Aligned_cols=62 Identities=21% Similarity=0.302 Sum_probs=45.7
Q ss_pred eEEEEEEEe-eeEeeecCC-cEEEEEEEeCCc--eEEEEEchHHHHHHHhhccCCcEE-EEEEEEEee
Q psy9396 987 CTVSGIITE-LKLKTTYRG-KILIIVIDDNSN--SVEVIINNQLYEKNKNILKENELL-IVSGKVLED 1049 (1149)
Q Consensus 987 v~v~G~I~~-vk~~~TK~G-~mafltleD~tg--~ie~vvFp~~y~~~~~~l~~~~~v-~v~G~v~~~ 1049 (1149)
-+++|+|++ ...+.|.+| ++.+..|-|..+ .+++.+|-+.|++|-. ++.|.++ ++.-.|-.+
T Consensus 188 Wvt~GvI~~K~~~K~t~~G~~y~iwkL~dLk~~q~vslfLFG~a~k~~wk-~k~GtVialLNp~v~k~ 254 (578)
T KOG3056|consen 188 WVTMGVIVEKSDPKFTSNGNPYSIWKLTDLKDHQTVSLFLFGKAHKRYWK-IKLGTVIALLNPEVLKD 254 (578)
T ss_pred eEEEEEEeecCCcccccCCCceEEEEeeecCccceeEEEEecHHHHHHhh-hccCcEEEEeCccccCC
Confidence 355666664 466688899 788999999888 8999999999999876 4556555 445555443
No 176
>COG5176 MSL5 Splicing factor (branch point binding protein) [RNA processing and modification]
Probab=47.02 E-value=8.4 Score=41.10 Aligned_cols=116 Identities=22% Similarity=0.329 Sum_probs=59.5
Q ss_pred CHHHHHHHhcChHHHHHHHHHHHHhccccccccCCCCC-CCCCCCCCCHHHHHHHH----HHHHHHHHHhhhCCChhhhh
Q psy9396 243 TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLP-KFPTPKNININDFLISK----SKHGLKKRLLNLYKDPEIYK 317 (1149)
Q Consensus 243 s~~em~~~f~~~~~a~~nt~~ia~~c~~~~~~~~~~lP-~~~~p~~~~~~~~l~~l----~~~gl~~r~~~~~~~~~~~~ 317 (1149)
+.++|...|..+|.++.-+.-.-.--.+.+.+.....| +..+|++..+...||.. .++..-+|+..
T Consensus 39 ~ve~~~~~~~~l~s~i~~~lt~eqi~~y~~~~r~~eit~Klrt~d~Vp~~re~Rspsppp~yd~~GrRlnt--------- 109 (269)
T COG5176 39 TVESDVHRFNSLPSKISGALTREQIYSYQVMMRPFEITEKLRTPDGVPSKRELRSPSPPPRYDEIGRRLNT--------- 109 (269)
T ss_pred cHHHhhhhhhcchhHhhhhhhHHHHHHHHHhccHhhhhhhhcCCCCCCchhhccCCCCCcchhHHhhhhhH---------
Confidence 57888888988888776543211110111111111111 22233333333333322 12222334321
Q ss_pred hhhHHHHHHHHHH-HHHHH-hcCCchhhHHHHHHHHHHHhC----------------CCcccCCCcchhH
Q psy9396 318 CEKLRYKKRLQFE-IETII-KMNFSGYFLIVSDFIQWAKNN----------------SIPVGPGRGSGAS 369 (1149)
Q Consensus 318 ~~~~~~~~Rl~~E-L~vI~-~~gf~~YFLiv~D~v~~ak~~----------------gi~vGpGRGSaag 369 (1149)
...-|..||+.| |.+++ .|..-.||..-.|+++=++-+ |.++|| |||.--
T Consensus 110 -re~ry~kkLeder~~l~era~k~lp~fv~p~dy~rpsk~q~KiYIPV~eyPe~NFVGLliGP-RG~Tlk 177 (269)
T COG5176 110 -REARYNKKLEDERLWLKERAQKILPRFVLPNDYIRPSKYQNKIYIPVQEYPESNFVGLLIGP-RGSTLK 177 (269)
T ss_pred -HHHHHhhhhhHHHHHHHHHHHHhcCcccCCccccCcccccceEEeehhhCcccceeEEEecC-CcchHH
Confidence 123477777766 44443 566778888888887777642 677899 998643
No 177
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=44.63 E-value=54 Score=35.92 Aligned_cols=58 Identities=16% Similarity=0.145 Sum_probs=39.6
Q ss_pred cccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhCCCeeEee
Q psy9396 5 FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIG 66 (1149)
Q Consensus 5 fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~GIKpIiG 66 (1149)
|+|-|||-+.+..+ .+++++++.+++.|.+.+.+.=.+ ..+.....+.+++.+ +++.+
T Consensus 1 ~iD~H~Hl~~~~~~--~~~~~~~~~~~~~Gv~~~v~~~~~-~~~~~~~~~~~~~~~-~i~~~ 58 (252)
T TIGR00010 1 LIDAHCHLDFLDFE--EDVEEVIERAKAAGVTAVVAVGTD-LEDFLRALELAEKYP-NVYAA 58 (252)
T ss_pred CEEeccCCCChhhc--cCHHHHHHHHHHcCCCEEEEecCC-HHHHHHHHHHHHHCC-CEEEE
Confidence 46889996543222 279999999999999888753222 355566677788877 65443
No 178
>KOG2411|consensus
Probab=43.67 E-value=54 Score=39.72 Aligned_cols=79 Identities=14% Similarity=0.217 Sum_probs=54.6
Q ss_pred CCceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchHHHH--HH-HhhccCCcEEEEEEEEEeec--------cC
Q psy9396 984 TYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYE--KN-KNILKENELLIVSGKVLEDR--------FL 1052 (1149)
Q Consensus 984 ~~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~~y~--~~-~~~l~~~~~v~v~G~v~~~~--------~~ 1052 (1149)
+.+|.++|++..-++. +...|+.|-|.+|.+.+.+-|+.|- +. ...+.-..+|.++|.|..+. ..
T Consensus 47 g~kv~l~GWl~~~~~~----k~~~F~~LRD~~G~vq~lls~~s~~l~~~~~~~v~~e~vv~v~gtvv~Rp~~sin~km~t 122 (628)
T KOG2411|consen 47 GKKVVLCGWLELHRVH----KMLTFFNLRDAYGIVQQLLSPDSFPLAQKLENDVPLEDVVQVEGTVVSRPNESINSKMKT 122 (628)
T ss_pred CCEEEEeeeeeeeecc----ccceEEEeeccCcceEEEecchhhhHHhcccCCCChhheEeeeeeEecccccccCccccc
Confidence 3489999999865544 2256999999999999999999982 22 23344567999999997541 11
Q ss_pred CceEEEEccccccH
Q psy9396 1053 KNIRINAEKIFDIN 1066 (1149)
Q Consensus 1053 ~~~~ii~~~i~~l~ 1066 (1149)
|.+.+.++++.-+.
T Consensus 123 g~vev~~e~~~vln 136 (628)
T KOG2411|consen 123 GFVEVVAEKVEVLN 136 (628)
T ss_pred cceEEEeeeeEEec
Confidence 23445666665444
No 179
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=42.86 E-value=1e+02 Score=32.30 Aligned_cols=56 Identities=18% Similarity=0.253 Sum_probs=41.1
Q ss_pred CCceEEEEEEE--eeeEeeecCCcEEEEEEEeCCceEEEE---EchHHHHHHHhhccCCcEEEEEEEEEe
Q psy9396 984 TYSCTVSGIIT--ELKLKTTYRGKILIIVIDDNSNSVEVI---INNQLYEKNKNILKENELLIVSGKVLE 1048 (1149)
Q Consensus 984 ~~~v~v~G~I~--~vk~~~TK~G~mafltleD~tg~ie~v---vFp~~y~~~~~~l~~~~~v~v~G~v~~ 1048 (1149)
++.+++.|+|. ++++ ...|-..-+++.|....+.|+ +-|+ ++++|.-++++|++..
T Consensus 57 g~~iRvgG~V~~GSv~r--~~~~~~v~F~vtD~~~~v~V~Y~GilPD-------lFrEG~gVVveG~~~~ 117 (159)
T PRK13150 57 GQRLRVGGMVMPGSVRR--DPDSLKVNFSLYDAEGSVTVSYEGILPD-------LFREGQGVVVQGTLEK 117 (159)
T ss_pred CCEEEEeeEEeCCcEEE--CCCCcEEEEEEEcCCcEEEEEEeccCCc-------cccCCCeEEEEEEECC
Confidence 45899999999 4543 333334567889999999887 4555 4678999999999963
No 180
>PF10391 DNA_pol_lambd_f: Fingers domain of DNA polymerase lambda; InterPro: IPR018944 DNA polymerases catalyse the addition of dNMPs onto the 3-prime ends of DNA chains. There is a general polymerase fold consisting of three subdomains that have been likened to the fingers, palm, and thumb of a right hand. This entry represents the central three-helical region of DNA polymerase lambda referred to as the F and G helices of the fingers domain. Contacts with DNA involve this conserved helix-hairpin-helix motif in the fingers region which interacts with the primer strand. This motif is common to several DNA binding proteins and confers a sequence-independent interaction with the DNA backbone []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 1KDH_A 1KEJ_A 1JMS_A 2IHM_A 3OGU_A 1MQ2_A 2P66_A 7ICI_A 1ZQN_A 1ZQK_A ....
Probab=41.88 E-value=29 Score=29.34 Aligned_cols=38 Identities=21% Similarity=0.270 Sum_probs=23.2
Q ss_pred ccccCCccHHHHHHHHHHHhcCCCCCHHHHHhhcccCCCCHHHH
Q psy9396 835 LGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRII 878 (1149)
Q Consensus 835 l~~Ikgvg~~~~~~i~~~r~~g~f~~~~df~~r~~~~~~~~~~l 878 (1149)
|..|-|||+.+|++.++. | |+|++|+... . ..+|+.+.
T Consensus 4 f~~I~GVG~~tA~~w~~~---G-~rtl~Dl~~~-~-~~Lt~~Q~ 41 (52)
T PF10391_consen 4 FTGIWGVGPKTARKWYAK---G-IRTLEDLRKS-K-SKLTWQQQ 41 (52)
T ss_dssp HHTSTT--HHHHHHHHHT---T---SHHHHHHG-G-CGS-HHHH
T ss_pred hhhcccccHHHHHHHHHh---C-CCCHHHHhhh-h-ccCCHHHH
Confidence 567899999999999872 3 9999999432 2 25665543
No 181
>PRK10425 DNase TatD; Provisional
Probab=41.11 E-value=63 Score=36.42 Aligned_cols=60 Identities=18% Similarity=0.072 Sum_probs=42.6
Q ss_pred cccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhC-CCeeEeee
Q psy9396 5 FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNK-GIKPIIGC 67 (1149)
Q Consensus 5 fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~-GIKpIiG~ 67 (1149)
++|-|||=++.-++ ...++++++|++.|..++.++-. +.-.+.+..+.|+++ ++.+-+|+
T Consensus 1 ~iDtH~HL~~~~~~--~d~~~vl~~a~~~gv~~~i~~~~-~~~~~~~~~~l~~~~~~v~~~~Gi 61 (258)
T PRK10425 1 MFDIGVNLTSSQFA--KDRDDVVARAFAAGVNGMLITGT-NLRESQQAQKLARQYPSCWSTAGV 61 (258)
T ss_pred CEEeeeCcCChhhh--ccHHHHHHHHHHCCCCEEEEeCC-CHHHHHHHHHHHHhCCCEEEEEEe
Confidence 46889996543222 57899999999999988776554 356677778888876 45555553
No 182
>COG2920 DsrC Dissimilatory sulfite reductase (desulfoviridin), gamma subunit [Inorganic ion transport and metabolism]
Probab=40.69 E-value=47 Score=31.88 Aligned_cols=51 Identities=20% Similarity=0.341 Sum_probs=38.5
Q ss_pred chHhHHHHHHHHhCcccEEEEEecccc-hhhhHHHHHHHhcCCCHHHHHHHHccCCCCCC
Q psy9396 412 GRDRVIQYVKDRYGKDAVSQIVTFGTM-AAKGAIRDVGRVLDLRYSFCDSISKLIPFKPG 470 (1149)
Q Consensus 412 ~R~~vi~yv~~kYG~~~Va~I~Tf~t~-~ak~airdv~r~lg~~~~~~~~i~k~ip~~~~ 470 (1149)
.--+||.||++=|- +|+|- +-|+.++.+++-+|-+-.-...+-++.|..|.
T Consensus 44 eHWevv~fvR~fy~--------ef~tsPaiRMLvK~~~~~~g~~kgNs~yl~~LFP~GPA 95 (111)
T COG2920 44 EHWEVVRFVREFYE--------EFNTSPAIRMLVKAMAKKLGEEKGNSRYLYRLFPKGPA 95 (111)
T ss_pred HHHHHHHHHHHHHH--------HHCCCchHHHHHHHHHHHhCcccccHHHHHHHCCCCcH
Confidence 45689999999885 36655 45788888888888777667777788887654
No 183
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=40.27 E-value=45 Score=40.28 Aligned_cols=62 Identities=19% Similarity=0.194 Sum_probs=42.9
Q ss_pred CCccccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCC-----chhhHHHHHHHHHhCCCeeEeee
Q psy9396 2 IPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLS-----NLFGIIKFYKSAYNKGIKPIIGC 67 (1149)
Q Consensus 2 ~~~fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~-----nl~G~~~f~~~ak~~GIKpIiG~ 67 (1149)
.|.|+|.|+|-..|. .+++++.++|...|..++..--|. ..-|+..+.+.+++..++....+
T Consensus 8 ~PG~ID~H~Hi~~~~----~~~~~~~~~a~~~GvTtvv~~p~~~~~v~g~~~~~~~~~~a~~~p~~~~~~~ 74 (422)
T cd01295 8 VPGFIDAHLHIESSM----LTPSEFAKAVLPHGTTTVIADPHEIANVAGVDGIEFMLEDAKKTPLDIFWML 74 (422)
T ss_pred ccCEEEccCCcCCCC----CChHHHHHHHHCCCcEEEEeCCCCCCcCCCHHHHHHHHHHHhCCCceEEEeC
Confidence 467999999999884 467889999999999987763222 33444566666666655444433
No 184
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=37.50 E-value=39 Score=36.75 Aligned_cols=66 Identities=18% Similarity=0.175 Sum_probs=46.2
Q ss_pred cccccccccCchhhc------------------cccHHHHHHHHHHcCCCEEEEecCCch-----hhHHHHHHHHHhC-C
Q psy9396 5 FIHLRLHSEYSIIDG------------------LLRINDVIEAAANDYQPALAITDLSNL-----FGIIKFYKSAYNK-G 60 (1149)
Q Consensus 5 fv~LHvHS~ySlldg------------------~~~ieeLV~~Ake~G~~AlAITDH~nl-----~G~~~f~~~ak~~-G 60 (1149)
|+|.|+|..++.+.+ .......++.+.+.|...+...-+... -....+.+.+++. |
T Consensus 1 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvttv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (275)
T cd01292 1 FIDTHVHLDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDMGSTPPPTTTKAAIEAVAEAARASAG 80 (275)
T ss_pred CcccchhhHHHHHccCCCccccccccccCHHHHHHHHHHHHHHHHhcCceEEEeeEeecCccccchHHHHHHHHHHHhcC
Confidence 689999998886665 445788889999999887765332111 1245667777777 7
Q ss_pred CeeEeeeeee
Q psy9396 61 IKPIIGCDVW 70 (1149)
Q Consensus 61 IKpIiG~Ei~ 70 (1149)
+..+++..++
T Consensus 81 ~~~~~~~~~~ 90 (275)
T cd01292 81 IRVVLGLGIP 90 (275)
T ss_pred eeeEEeccCC
Confidence 8887776654
No 185
>PRK08402 replication factor A; Reviewed
Probab=36.60 E-value=1.1e+02 Score=36.12 Aligned_cols=60 Identities=22% Similarity=0.360 Sum_probs=45.5
Q ss_pred EEEEEeCCceEEEEEchHHHHHH------------Hhhcc--------------------CCcEEEEEEEEEeeccCCce
Q psy9396 1008 IIVIDDNSNSVEVIINNQLYEKN------------KNILK--------------------ENELLIVSGKVLEDRFLKNI 1055 (1149)
Q Consensus 1008 fltleD~tg~ie~vvFp~~y~~~------------~~~l~--------------------~~~~v~v~G~v~~~~~~~~~ 1055 (1149)
-+.|.|.||++.+++|.+.-++. ++.+. -+..+.++|++..+.+++ .
T Consensus 248 ~~~l~D~TG~~~vt~f~e~ae~llG~sa~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rg~~~~d~y~~-~ 326 (355)
T PRK08402 248 DFGLDDGTGYIRVTLFGDDAAELLGVEPEEIAEKLKELIEMGLTPKEAARKLAEEEFYNIIGREIVVRGNVIEDRFLG-L 326 (355)
T ss_pred EEEEEcCCCcEEEEEecHHHHHHhCCCHHHHHHHHHHhhhcccchhhhhhhHHHHHHHHhcCeEEEEEEEEEecccCC-e
Confidence 58899999999999999877554 21111 167889999999876644 5
Q ss_pred EEEEccccccHHH
Q psy9396 1056 RINAEKIFDINVA 1068 (1149)
Q Consensus 1056 ~ii~~~i~~l~~~ 1068 (1149)
++.|..+.+++-.
T Consensus 327 ~~~v~~~~~vd~~ 339 (355)
T PRK08402 327 ILKASSWDEVDYK 339 (355)
T ss_pred EEEEEEcccCCHH
Confidence 5899888888654
No 186
>PRK09228 guanine deaminase; Provisional
Probab=36.15 E-value=62 Score=39.22 Aligned_cols=66 Identities=11% Similarity=0.155 Sum_probs=43.5
Q ss_pred CccccccccccCchhhcc--------------------ccHHHH-------HHHHHHcCCCEEEEecCCchh--hHHHHH
Q psy9396 3 PQFIHLRLHSEYSIIDGL--------------------LRINDV-------IEAAANDYQPALAITDLSNLF--GIIKFY 53 (1149)
Q Consensus 3 ~~fv~LHvHS~ySlldg~--------------------~~ieeL-------V~~Ake~G~~AlAITDH~nl~--G~~~f~ 53 (1149)
|.||+.|+|...|.+.|. .++++. +..+-+.|..+++ ||++++ +...+.
T Consensus 70 PGlVn~H~H~~~~~~~g~~~~~l~~wl~~~~~~~e~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~--d~~~~~~~~~~~~~ 147 (433)
T PRK09228 70 PGFIDTHIHYPQTDMIASYGEQLLDWLNTYTFPEERRFADPAYAREVAEFFLDELLRNGTTTAL--VFGTVHPQSVDALF 147 (433)
T ss_pred cceecccccccchhhccCCchHHHHHHHhhhhHHHHHhCCHHHHHHHHHHHHHHHHhCCceEEE--eccccCHHHHHHHH
Confidence 579999999988866552 122221 1224566777665 776553 455677
Q ss_pred HHHHhCCCeeEeeeeee
Q psy9396 54 KSAYNKGIKPIIGCDVW 70 (1149)
Q Consensus 54 ~~ak~~GIKpIiG~Ei~ 70 (1149)
+++++.||+.++|-.+.
T Consensus 148 ~a~~~~GiR~~~~~~~~ 164 (433)
T PRK09228 148 EAAEARNMRMIAGKVLM 164 (433)
T ss_pred HHHHHcCCeEEeeeeee
Confidence 78889999998876653
No 187
>TIGR00156 conserved hypothetical protein TIGR00156. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae.
Probab=35.90 E-value=61 Score=32.57 Aligned_cols=71 Identities=17% Similarity=0.293 Sum_probs=50.5
Q ss_pred cCCCCceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeeccCCceEEEEc
Q psy9396 981 LKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAE 1060 (1149)
Q Consensus 981 l~~~~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~~ 1060 (1149)
+.++..|.+-|.|+..- ++. -..+.|.||.|.+-|=++.|. ..-+.++..|.|.|+|+.+. ....+=|+
T Consensus 54 ~~Ddt~V~L~G~Iv~~l-----~~d--~Y~F~D~TG~I~VeId~~~w~--G~~v~p~d~V~I~GeVDk~~--~~~~IdV~ 122 (126)
T TIGR00156 54 MHDGASVTLRGNIISHI-----GDD--RYVFRDKSGEINVVIPAAVWN--GREVQPKDMVNISGSLDKKS--APAEVDVT 122 (126)
T ss_pred CCCCCEEEEEEEEEEEe-----CCc--eEEEECCCCCEEEEECHHHcC--CCcCCCCCEEEEEEEECCCC--CCeEEEEE
Confidence 34445889999887332 122 256689999999999999994 44578899999999998652 34555555
Q ss_pred cc
Q psy9396 1061 KI 1062 (1149)
Q Consensus 1061 ~i 1062 (1149)
+|
T Consensus 123 ~I 124 (126)
T TIGR00156 123 HI 124 (126)
T ss_pred EE
Confidence 54
No 188
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=35.02 E-value=94 Score=29.98 Aligned_cols=52 Identities=17% Similarity=0.294 Sum_probs=39.9
Q ss_pred chhhccccHHHHHHHHHHcCCCEEEEec--CCchhhHHHHHHHHHhC--CCeeEee
Q psy9396 15 SIIDGLLRINDVIEAAANDYQPALAITD--LSNLFGIIKFYKSAYNK--GIKPIIG 66 (1149)
Q Consensus 15 Slldg~~~ieeLV~~Ake~G~~AlAITD--H~nl~G~~~f~~~ak~~--GIKpIiG 66 (1149)
+++|...+.+++++++++.+.+.|++|= ..+...+.++.+..++. +++.++|
T Consensus 32 ~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~G 87 (121)
T PF02310_consen 32 DILDANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVG 87 (121)
T ss_dssp EEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred EEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 3578888889999999999999999974 55666777777776665 6777666
No 189
>TIGR03631 bact_S13 30S ribosomal protein S13. This model describes bacterial ribosomal protein S13, to the exclusion of the homologous archaeal S13P and eukaryotic ribosomal protein S18. This model identifies some (but not all) instances of chloroplast and mitochondrial S13, which is of bacterial type.
Probab=34.22 E-value=75 Score=31.31 Aligned_cols=49 Identities=18% Similarity=0.318 Sum_probs=34.6
Q ss_pred CCCeEEecccccCCccHHHHHHHHHHHhcCCCCCHHHHHhhcccCCCCHHHHHHHHHc
Q psy9396 827 KHKKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINS 884 (1149)
Q Consensus 827 ~~~~I~~gl~~Ikgvg~~~~~~i~~~r~~g~f~~~~df~~r~~~~~~~~~~le~Li~~ 884 (1149)
++..|+++|..|.|||...|..|.+.=.-.|.. ++ ..++...++.|.+.
T Consensus 9 ~~k~v~~aL~~i~GIG~~~a~~i~~~lgi~~~~-------~~--~~L~~~qi~~l~~~ 57 (113)
T TIGR03631 9 NNKRVEIALTYIYGIGRTRARKILEKAGIDPDK-------RV--KDLTEEELNAIREE 57 (113)
T ss_pred CCCEEeeeeeeeecccHHHHHHHHHHhCcCccc-------cc--ccCCHHHHHHHHHH
Confidence 457899999999999999999998753222222 22 44677777777653
No 190
>KOG0555|consensus
Probab=34.10 E-value=63 Score=38.10 Aligned_cols=74 Identities=15% Similarity=0.296 Sum_probs=56.6
Q ss_pred CceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchHHHHHHHhh-ccCCcEEEEEEEEEeec----cCCceEEEE
Q psy9396 985 YSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNI-LKENELLIVSGKVLEDR----FLKNIRINA 1059 (1149)
Q Consensus 985 ~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~~y~~~~~~-l~~~~~v~v~G~v~~~~----~~~~~~ii~ 1059 (1149)
++|.|-|+|-.+|+- + .+.|++|-|++|.+.+|.-.+.+..|..+ |....-|.|-|.+..-. ..++..+.|
T Consensus 124 qrVkv~gWVhrlR~q---k-~l~FivLrdg~gflqCVl~~kl~~~yd~~~Ls~essv~vYG~i~~~p~GK~apgghEl~v 199 (545)
T KOG0555|consen 124 QRVKVFGWVHRLRRQ---K-SLIFIVLRDGTGFLQCVLSDKLCQSYDALTLSTESSVTVYGTIKKLPEGKSAPGGHELNV 199 (545)
T ss_pred ceEEeehhhHhhhhc---C-ceEEEEEecCCceEEEEEcchhhhhhccccccccceEEEEEEEecCcCCCCCCCCceEEe
Confidence 389999999877654 3 38999999999999999999999777654 56678899999998631 124556666
Q ss_pred ccc
Q psy9396 1060 EKI 1062 (1149)
Q Consensus 1060 ~~i 1062 (1149)
+=.
T Consensus 200 dy~ 202 (545)
T KOG0555|consen 200 DYW 202 (545)
T ss_pred eee
Confidence 533
No 191
>smart00278 HhH1 Helix-hairpin-helix DNA-binding motif class 1.
Probab=33.86 E-value=31 Score=24.55 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=16.4
Q ss_pred ccccCCccHHHHHHHHHHH
Q psy9396 835 LGAIKGTGKSTIEAIVTER 853 (1149)
Q Consensus 835 l~~Ikgvg~~~~~~i~~~r 853 (1149)
|..|+|+|+..++.|++..
T Consensus 3 L~~i~GiG~k~A~~il~~~ 21 (26)
T smart00278 3 LLKVPGIGPKTAEKILEAX 21 (26)
T ss_pred hhhCCCCCHHHHHHHHHhc
Confidence 6789999999999998743
No 192
>CHL00137 rps13 ribosomal protein S13; Validated
Probab=32.90 E-value=65 Score=32.22 Aligned_cols=48 Identities=23% Similarity=0.333 Sum_probs=33.2
Q ss_pred CCCeEEecccccCCccHHHHHHHHHHHhcCCCCCHHHHHhhcccCCCCHHHHHHHHH
Q psy9396 827 KHKKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLIN 883 (1149)
Q Consensus 827 ~~~~I~~gl~~Ikgvg~~~~~~i~~~r~~g~f~~~~df~~r~~~~~~~~~~le~Li~ 883 (1149)
++..|+++|..|.|||...|..|.+.=.-.|..-+ ..++..+++.|.+
T Consensus 11 ~~k~v~~aLt~i~GIG~~~A~~ic~~lgi~~~~~~---------~~Lt~~qi~~l~~ 58 (122)
T CHL00137 11 RNKRIEYALTYIYGIGLTSAKEILEKANIDPDIRT---------KDLTDEQISALRE 58 (122)
T ss_pred CCCEeeeeecccccccHHHHHHHHHHcCcCcCcCc---------ccCCHHHHHHHHH
Confidence 45789999999999999999999875432232222 3456666666654
No 193
>PRK05179 rpsM 30S ribosomal protein S13; Validated
Probab=32.86 E-value=83 Score=31.45 Aligned_cols=48 Identities=19% Similarity=0.318 Sum_probs=33.3
Q ss_pred CCCeEEecccccCCccHHHHHHHHHHHhcCCCCCHHHHHhhcccCCCCHHHHHHHHH
Q psy9396 827 KHKKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLIN 883 (1149)
Q Consensus 827 ~~~~I~~gl~~Ikgvg~~~~~~i~~~r~~g~f~~~~df~~r~~~~~~~~~~le~Li~ 883 (1149)
++..|+++|..|.|||...|..|.+.=.-.|.. ++ +.++...++.|..
T Consensus 11 ~~k~v~~aL~~I~GIG~~~a~~i~~~lgi~~~~-------~~--~~L~~~qi~~l~~ 58 (122)
T PRK05179 11 RNKRVVIALTYIYGIGRTRAKEILAAAGIDPDT-------RV--KDLTDEELDKIRE 58 (122)
T ss_pred CCcEEEeeecccccccHHHHHHHHHHhCcCccc-------cc--ccCCHHHHHHHHH
Confidence 457899999999999999999998754212222 22 3456666666654
No 194
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=32.77 E-value=78 Score=35.84 Aligned_cols=48 Identities=19% Similarity=0.035 Sum_probs=29.2
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhCCCeeEeeeeee
Q psy9396 22 RINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVW 70 (1149)
Q Consensus 22 ~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~GIKpIiG~Ei~ 70 (1149)
-+++.++.|++.|.+++.|-|-- +--..+|.+.|+++|+.+|+=+--+
T Consensus 107 G~e~F~~~~~~aGvdgviipDLP-~ee~~~~~~~~~~~gi~~I~lv~Pt 154 (263)
T CHL00200 107 GINKFIKKISQAGVKGLIIPDLP-YEESDYLISVCNLYNIELILLIAPT 154 (263)
T ss_pred CHHHHHHHHHHcCCeEEEecCCC-HHHHHHHHHHHHHcCCCEEEEECCC
Confidence 45666777777777777776642 2334566666777776665544433
No 195
>TIGR03342 dsrC_tusE_dsvC sulfur relay protein, TusE/DsrC/DsvC family. Members of this protein family may be described as TusE, a partner to TusBCD in a sulfur relay system for 2-thiouridine biosynthesis, a tRNA base modification process. Other members are DsrC, a functionally similar protein in species where the sulfur relay system exists primarily for sulfur metabolism rather than tRNA base modification. Some members of this family are known explicitly as the gamma subunit of sulfite reductases.
Probab=32.69 E-value=29 Score=33.90 Aligned_cols=31 Identities=23% Similarity=0.377 Sum_probs=19.4
Q ss_pred chHhHHHHHHHHhCcccEEEEEecccchhhhHHHHHHHhcCC
Q psy9396 412 GRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDL 453 (1149)
Q Consensus 412 ~R~~vi~yv~~kYG~~~Va~I~Tf~t~~ak~airdv~r~lg~ 453 (1149)
.--+||+||++-|=+..++ -++|.+.+.++.
T Consensus 41 ~Hw~vI~~lR~~y~e~~~~-----------P~~R~l~K~~~~ 71 (108)
T TIGR03342 41 AHWEVINFLRDFYAEYNIS-----------PAVRMLVKAMGK 71 (108)
T ss_pred HHHHHHHHHHHHHHHHCCC-----------CcHHHHHHHHHH
Confidence 4467999999988543332 255666555554
No 196
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=32.39 E-value=84 Score=30.68 Aligned_cols=38 Identities=24% Similarity=0.210 Sum_probs=28.2
Q ss_pred ccHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhCCCeeE
Q psy9396 21 LRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64 (1149)
Q Consensus 21 ~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~GIKpI 64 (1149)
..+-+.++.|++.|.+-++||+.+ ++.+.|.+.|+..+
T Consensus 57 ~e~i~~~~~a~~~g~~iI~IT~~~------~l~~~~~~~~~~~~ 94 (119)
T cd05017 57 EETLSAVEQAKERGAKIVAITSGG------KLLEMAREHGVPVI 94 (119)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCc------hHHHHHHHcCCcEE
Confidence 457788899999999999999744 36667777765543
No 197
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=32.34 E-value=1.8e+02 Score=30.47 Aligned_cols=56 Identities=20% Similarity=0.267 Sum_probs=39.8
Q ss_pred CCceEEEEEEE--eeeEeeecCCcEEEEEEEeCCceEEEE---EchHHHHHHHhhccCCcEEEEEEEEEe
Q psy9396 984 TYSCTVSGIIT--ELKLKTTYRGKILIIVIDDNSNSVEVI---INNQLYEKNKNILKENELLIVSGKVLE 1048 (1149)
Q Consensus 984 ~~~v~v~G~I~--~vk~~~TK~G~mafltleD~tg~ie~v---vFp~~y~~~~~~l~~~~~v~v~G~v~~ 1048 (1149)
++.+++.|+|. ++++ ...+--.-+++.|....+.|. +-|++ +++|.-++++|+++.
T Consensus 57 g~~iRvgG~V~~GSi~r--~~~~l~v~F~vtD~~~~v~V~Y~GilPDl-------FrEG~gVVveG~~~~ 117 (160)
T PRK13165 57 GQRLRVGGMVMPGSVQR--DPNSLKVSFTLYDAGGSVTVTYEGILPDL-------FREGQGIVAQGVLEE 117 (160)
T ss_pred CCEEEEeeEEeCCcEEE--CCCCeEEEEEEEcCCeEEEEEEcccCCcc-------ccCCCeEEEEEEECC
Confidence 45899999999 4443 222322456778999899877 55554 667999999999963
No 198
>PRK06739 pyruvate kinase; Validated
Probab=31.65 E-value=6e+02 Score=30.18 Aligned_cols=124 Identities=12% Similarity=0.108 Sum_probs=79.4
Q ss_pred HHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhCCCeeEeeeeeeecccccCCCCccEEEEEc--ccHHHHHHHHHHHH
Q psy9396 25 DVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIENKKPSRLLLLVK--NNNGYLQLCELLSK 102 (1149)
Q Consensus 25 eLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~GIKpIiG~Ei~v~~~~~~~~~~hlllLAk--N~~Gy~nL~kL~S~ 102 (1149)
+-++.|.+.|.+.+|++=-.+-.-+.++.+.+.+.|- .++-++|| +.+|..||-+|+.
T Consensus 169 ~di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~g~-------------------~~~~IiaKIE~~~av~nl~eI~~- 228 (352)
T PRK06739 169 KDIQFLLEEDVDFIACSFVRKPSHIKEIRDFIQQYKE-------------------TSPNLIAKIETMEAIENFQDICK- 228 (352)
T ss_pred HHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCC-------------------CCCcEEEEECCHHHHHHHHHHHH-
Confidence 3477899999999999765555555666666655441 12334455 6678877755443
Q ss_pred HHHhhccCCcccccHHHHhccccCCCeEEEeCCCcchHHHHHhcCChHHHHHHHHHHHHhCCCCeEEEEccCCCcchHHH
Q psy9396 103 AYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182 (1149)
Q Consensus 103 ~~~~~~~~~~p~i~~e~L~~~~~~~glIiis~~~~g~i~~~l~~~~~~~a~~~~~~~~~~f~~~~ylEi~~~~~~~~~~~ 182 (1149)
.++|+++-= |++ -+|+.. +.-..+
T Consensus 229 ----------------------~sDgimVAR----GDL---------------------------gve~~~---e~vp~~ 252 (352)
T PRK06739 229 ----------------------EADGIMIAR----GDL---------------------------GVELPY---QFIPLL 252 (352)
T ss_pred ----------------------hcCEEEEEC----ccc---------------------------ccccCH---HHHHHH
Confidence 345665432 222 123321 122345
Q ss_pred HHHHHHHHHhcCCCEEEecC-----ccccCccCchHHHHHHHHHcCC
Q psy9396 183 IQQFINIASNINLPIVATHP-----IQFLKKTEFLAHEVRTCIAEGE 224 (1149)
Q Consensus 183 n~~l~~lA~~~~iplVatnD-----vhyl~~eD~~~~~vL~aI~~g~ 224 (1149)
-+++++.|+++|.|++.... ++...|.-+++-||..|+..|.
T Consensus 253 Qk~Ii~~c~~~gkPvIvATqmLeSM~~~p~PTRAEvsDVanaV~dG~ 299 (352)
T PRK06739 253 QKMMIQECNRTNTYVITATQMLQSMVDHSIPTRAEVTDVFQAVLDGT 299 (352)
T ss_pred HHHHHHHHHHhCCCEEEEcchHHhhccCCCCChHHHHHHHHHHHhCC
Confidence 56789999999999994432 3446788999999999998876
No 199
>COG2426 Predicted membrane protein [Function unknown]
Probab=31.60 E-value=38 Score=33.76 Aligned_cols=48 Identities=29% Similarity=0.531 Sum_probs=35.7
Q ss_pred HHHHHHHHH-HHHHHhcCCchhhHHHHHHHHHHHhCCCcccCCCcchhHHHHHHHhcCCc
Q psy9396 322 RYKKRLQFE-IETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITD 380 (1149)
Q Consensus 322 ~~~~Rl~~E-L~vI~~~gf~~YFLiv~D~v~~ak~~gi~vGpGRGSaagSlVaY~LgIT~ 380 (1149)
.|.+|-.+- =...++-||.+-.+.|+ ||. ||-|-=.|.|-||+|||.+
T Consensus 66 ~~~~r~~rka~~yVER~G~iGL~iFvA----------IPL-P~TG~wtgaLaA~llgI~~ 114 (142)
T COG2426 66 WLVNRTRRKAKGYVERYGFIGLIIFVA----------IPL-PGTGAWTGALAAYLLGIRE 114 (142)
T ss_pred HHHHHHHHhccCcHhhhhhhhhhheee----------ccC-CCccHhHHHHHHHHHcCch
Confidence 345555444 34566778888766553 887 9999999999999999974
No 200
>PRK06380 metal-dependent hydrolase; Provisional
Probab=31.24 E-value=76 Score=38.10 Aligned_cols=19 Identities=26% Similarity=0.499 Sum_probs=15.4
Q ss_pred CCccccccccccCchhhcc
Q psy9396 2 IPQFIHLRLHSEYSIIDGL 20 (1149)
Q Consensus 2 ~~~fv~LHvHS~ySlldg~ 20 (1149)
.|.||+.|+|..++++.|.
T Consensus 53 ~PG~Vd~H~Hl~~~~~rg~ 71 (418)
T PRK06380 53 MPGLINTHAHVGMTASKGL 71 (418)
T ss_pred ccCEEeeccCCCccccCCc
Confidence 3579999999998876654
No 201
>PRK06687 chlorohydrolase; Validated
Probab=30.17 E-value=72 Score=38.33 Aligned_cols=66 Identities=12% Similarity=0.201 Sum_probs=39.5
Q ss_pred CccccccccccCchhhccc--------------------cHHHHHH-------HHHHcCCCEEEEecCCchh--hHHHHH
Q psy9396 3 PQFIHLRLHSEYSIIDGLL--------------------RINDVIE-------AAANDYQPALAITDLSNLF--GIIKFY 53 (1149)
Q Consensus 3 ~~fv~LHvHS~ySlldg~~--------------------~ieeLV~-------~Ake~G~~AlAITDH~nl~--G~~~f~ 53 (1149)
|.||+.|+|...|++.|.. ++++... .+.+.|..++. |+.+.+ ......
T Consensus 58 PGlIn~H~H~~~~~~rg~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~a~~e~l~~GvTTv~--d~~~~~~~~~~~~~ 135 (419)
T PRK06687 58 PGLVNCHTHSAMTGLRGIRDDSNLHEWLNDYIWPAESEFTPDMTTNAVKEALTEMLQSGTTTFN--DMYNPNGVDIQQIY 135 (419)
T ss_pred cceeeeccCCCccccccccCCCCHHHHHHhhhccccccCCHHHHHHHHHHHHHHHHhcCcceee--hhhccccccHHHHH
Confidence 5799999999999765432 2222211 12455666654 544322 245566
Q ss_pred HHHHhCCCeeEeeeeee
Q psy9396 54 KSAYNKGIKPIIGCDVW 70 (1149)
Q Consensus 54 ~~ak~~GIKpIiG~Ei~ 70 (1149)
+++++.|+...+|..++
T Consensus 136 ~a~~~~Gir~~~~~~~~ 152 (419)
T PRK06687 136 QVVKTSKMRCYFSPTLF 152 (419)
T ss_pred HHHHHhCCceEeccccc
Confidence 77788888877765543
No 202
>COG3111 Periplasmic protein with OB-fold [Function unknown]
Probab=30.11 E-value=1.4e+02 Score=29.74 Aligned_cols=72 Identities=18% Similarity=0.304 Sum_probs=50.7
Q ss_pred cCCCCceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeeccCCceEEEEc
Q psy9396 981 LKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAE 1060 (1149)
Q Consensus 981 l~~~~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~~ 1060 (1149)
+.++..|.+-|.|+.. .++. -..+.|.+|+|.+-|=.+.|. ..-+.....|.|.|+|+++. ..+.+-|+
T Consensus 54 ~~Dda~V~l~GnIv~q-----i~~D--~y~FrD~sGeI~VeIdd~~w~--g~tv~P~dkV~I~GevDk~~--~~~eIdV~ 122 (128)
T COG3111 54 LHDDAWVSLEGNIVRQ-----IGDD--RYVFRDASGEINVDIDDKVWN--GQTVTPKDKVRIQGEVDKDW--NSVEIDVK 122 (128)
T ss_pred cccCCeEEEEeeEEEe-----eCCc--eEEEEcCCccEEEEecccccC--CcccCcccEEEEEeEEcCCC--ccceeEhh
Confidence 3334478888887632 2221 245689999999999888886 44578888999999998753 45566666
Q ss_pred ccc
Q psy9396 1061 KIF 1063 (1149)
Q Consensus 1061 ~i~ 1063 (1149)
+|+
T Consensus 123 ~I~ 125 (128)
T COG3111 123 HIE 125 (128)
T ss_pred heE
Confidence 554
No 203
>PRK10053 hypothetical protein; Provisional
Probab=29.67 E-value=87 Score=31.69 Aligned_cols=71 Identities=13% Similarity=0.299 Sum_probs=51.0
Q ss_pred cCCCCceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeeccCCceEEEEc
Q psy9396 981 LKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAE 1060 (1149)
Q Consensus 981 l~~~~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~~ 1060 (1149)
+.++..|.+=|.|+.-- ++. -..+.|.||+|++-|=.+.|. ..-+.++..|.|.|+|+.+. ....|=|+
T Consensus 58 ~~Dd~~V~L~G~Iv~~l-----g~d--~Y~F~D~tG~I~VeID~~~w~--G~~v~p~~kV~I~GevDk~~--~~~~IdV~ 126 (130)
T PRK10053 58 MHDGATVSLRGNLIDHK-----GDD--RYVFRDKSGEINVIIPAAVFD--GREVQPDQMININGSLDKKS--APPVVRVT 126 (130)
T ss_pred CcCCCeEEEEEEEEEEe-----CCc--eEEEECCCCcEEEEeCHHHcC--CCcCCCCCEEEEEEEECCCC--CCeEEEEE
Confidence 33345888889887321 222 245679999999999999994 55688899999999998753 34566565
Q ss_pred cc
Q psy9396 1061 KI 1062 (1149)
Q Consensus 1061 ~i 1062 (1149)
+|
T Consensus 127 ~i 128 (130)
T PRK10053 127 HL 128 (130)
T ss_pred EE
Confidence 55
No 204
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=29.63 E-value=1.3e+02 Score=33.94 Aligned_cols=55 Identities=13% Similarity=0.067 Sum_probs=41.1
Q ss_pred CccccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhCC
Q psy9396 3 PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60 (1149)
Q Consensus 3 ~~fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~G 60 (1149)
++++|-|||=++. .=.-..++++++|++.|...+..+=. ++-.+....+.|+++.
T Consensus 1 ~~liDtH~HL~~~--~~~~d~~~vi~~a~~~gv~~~~~~g~-~~~~~~~~~~la~~y~ 55 (256)
T COG0084 1 MMLIDTHCHLDFE--EFDEDRDEVIARAREAGVKKMVVVGT-DLEDFKRALELAEKYP 55 (256)
T ss_pred CccEEeeeCCCch--hhcCCHHHHHHHHHHcCCcEEEEeec-CHHHHHHHHHHHHhCC
Confidence 3589999999874 33457889999999999887766542 3555556777788775
No 205
>PF01817 CM_2: Chorismate mutase type II; InterPro: IPR020822 Chorismate mutase, 5.4.99.5 from EC, catalyses the conversion of chorismate to prephenate in the pathway of tyrosine and phenylalanine biosynthesis. This enzyme is negatively regulated by tyrosine, tryptophan and phenylalanine [, ]. Prephenate dehydratase (IPR001086 from INTERPRO, 4.2.1.51 from EC, PDT) catalyses the decarboxylation of prephenate into phenylpyruvate. In microorganisms PDT is involved in the terminal pathway of the biosynthesis of phenylalanine. In some bacteria, such as Escherichia coli, PDT is part of a bifunctional enzyme (P-protein) that also catalyzes the transformation of chorismate into prephenate (chorismate mutase) while in other bacteria it is a monofunctional enzyme. The sequence of monofunctional chorismate mutase aligns well with the N-terminal part of P-proteins [].; GO: 0046417 chorismate metabolic process; PDB: 1YBZ_A 2GTV_X 2FP1_B 2F6L_B 2FP2_B 2AO2_A 3HGW_C 3HGX_B 2H9C_A 3RET_B ....
Probab=29.25 E-value=2.4e+02 Score=25.50 Aligned_cols=45 Identities=18% Similarity=0.097 Sum_probs=35.4
Q ss_pred HHHHHhCCC--ChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q psy9396 701 LLRRAIGKK--KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKF 745 (1149)
Q Consensus 701 ~lRram~KK--~~~~m~~~~~~F~~ga~~~g~~~~~a~~i~~~i~~f 745 (1149)
.+.+.-|+. +++.-+++.+.+.+.|...|++++.++.||..|...
T Consensus 27 ~~K~~~~~~i~d~~RE~~v~~~~~~~~~~~~l~~~~i~~if~~ii~~ 73 (81)
T PF01817_consen 27 EYKKENGLPIFDPDREEEVLERLRELAEEGGLDPEFIERIFRAIIEE 73 (81)
T ss_dssp HHHHHTTCCSSTHHHHHHHHHHHHHHHHHTTSEHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCcHHHHHHHHHHHHHhHhCCCCHHHHHHHHHHHHHH
Confidence 344445543 566778888889999999999999999999998763
No 206
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=29.22 E-value=88 Score=36.83 Aligned_cols=47 Identities=13% Similarity=0.115 Sum_probs=33.0
Q ss_pred ccccHHHHHHHHHHcCCCEEEEe---------------cCCchh-h-----HHHHHHHHHhCCCeeEe
Q psy9396 19 GLLRINDVIEAAANDYQPALAIT---------------DLSNLF-G-----IIKFYKSAYNKGIKPII 65 (1149)
Q Consensus 19 g~~~ieeLV~~Ake~G~~AlAIT---------------DH~nl~-G-----~~~f~~~ak~~GIKpIi 65 (1149)
....+++.|+.|++.|++.+.+| |++.+- | +-+|.++|+++|||+-+
T Consensus 89 ~~fD~dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~ 156 (346)
T PF01120_consen 89 TKFDADQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGL 156 (346)
T ss_dssp TT--HHHHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEE
T ss_pred ccCCHHHHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEE
Confidence 34779999999999999999986 333221 1 24899999999999854
No 207
>COG4955 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.10 E-value=70 Score=36.33 Aligned_cols=72 Identities=21% Similarity=0.197 Sum_probs=53.4
Q ss_pred CCCCCCCCC-------HHHHHHHhcCCcCccccCCCHhHHHHHHhcCCCCHHHHHHHHhccCCCcccchHHHHHhhcCCC
Q psy9396 587 SLNKLPLND-------KDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEY 659 (1149)
Q Consensus 587 d~~~ip~dD-------~~t~~ll~~g~T~GvFQ~ES~gm~~~l~~~~P~~f~dl~a~~aL~RPGp~~~i~~yi~rk~g~~ 659 (1149)
++..||..+ .|||.|+.+|=|. -|-.-+|++|-.++||=+.-++| -||+-++++|+.+-
T Consensus 231 llss~~~~~n~Ltnst~kT~tm~~qgf~l--------e~Ia~ir~LKtsTIeDHfVEI~l--h~~af~~~dyVp~e---- 296 (343)
T COG4955 231 LLSSIIMKPNTLTNSTYKTYTMLLQGFTL--------EDIAAIRQLKTSTIEDHFVEILL--HGYAFNYDDYVPLE---- 296 (343)
T ss_pred HHHhccCccchhhHHHHHHHHHHHhcCCH--------HHHHHHHhhhhhhhhhhheeeee--cccccchhhccCcc----
Confidence 445555444 6999999998542 35567799999999999998988 47777777776541
Q ss_pred CCCCCcchhhccccccCeehhHHHHHHHHHHHc
Q psy9396 660 FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILG 692 (1149)
Q Consensus 660 v~y~~p~l~~iL~~TyGvivYQEQvM~ia~~~a 692 (1149)
=|+|+.|+|+.+-
T Consensus 297 --------------------~q~qiiqfa~~~r 309 (343)
T COG4955 297 --------------------DQLQIIQFAQQHR 309 (343)
T ss_pred --------------------cHHHHHHHHHHhh
Confidence 1789999987543
No 208
>COG0099 RpsM Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=28.70 E-value=51 Score=32.64 Aligned_cols=47 Identities=23% Similarity=0.322 Sum_probs=33.7
Q ss_pred CCCeEEecccccCCccHHHHHHHHHHHhcCCCCCHHHHHhhcccCCCCHHHHHHHH
Q psy9396 827 KHKKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLI 882 (1149)
Q Consensus 827 ~~~~I~~gl~~Ikgvg~~~~~~i~~~r~~g~f~~~~df~~r~~~~~~~~~~le~Li 882 (1149)
++..+.++|..|+|||...+.+|++.-. .|.-.|+ +.++-..++.|-
T Consensus 11 ~~K~v~iALt~IyGIG~~~a~~I~~~~g-------i~~~~r~--~eLteeei~~ir 57 (121)
T COG0099 11 GNKRVVIALTYIYGIGRRRAKEICKKAG-------IDPDKRV--GELTEEEIERLR 57 (121)
T ss_pred CCceEeehhhhhccccHHHHHHHHHHcC-------CCHhHhh--ccCCHHHHHHHH
Confidence 4578999999999999999999998642 1223444 346666666654
No 209
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=27.62 E-value=1.6e+02 Score=30.02 Aligned_cols=42 Identities=17% Similarity=0.199 Sum_probs=34.8
Q ss_pred cccHHHHHHHHHHcCCCEEEEecCC--chhhHHHHHHHHHhCCC
Q psy9396 20 LLRINDVIEAAANDYQPALAITDLS--NLFGIIKFYKSAYNKGI 61 (1149)
Q Consensus 20 ~~~ieeLV~~Ake~G~~AlAITDH~--nl~G~~~f~~~ak~~GI 61 (1149)
-.+++++++.|++.+-++|+++=.. ++-...++.+.+++.|+
T Consensus 38 ~v~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl 81 (134)
T TIGR01501 38 LSPQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGL 81 (134)
T ss_pred CCCHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCC
Confidence 4789999999999999999998854 45556788888888876
No 210
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=27.58 E-value=1.1e+02 Score=34.79 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=14.6
Q ss_pred EEEEecCCc--hhhHHHHHHHHHhCCCeeEee
Q psy9396 37 ALAITDLSN--LFGIIKFYKSAYNKGIKPIIG 66 (1149)
Q Consensus 37 AlAITDH~n--l~G~~~f~~~ak~~GIKpIiG 66 (1149)
-+-+|=.|- -||..+|++.|++.|+.=++=
T Consensus 97 ivlm~Y~Npi~~~Gie~F~~~~~~~GvdGliv 128 (265)
T COG0159 97 IVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLV 128 (265)
T ss_pred EEEEEeccHHHHhhHHHHHHHHHHcCCCEEEe
Confidence 444444332 345555555555555544433
No 211
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=27.22 E-value=91 Score=37.14 Aligned_cols=66 Identities=12% Similarity=0.260 Sum_probs=43.5
Q ss_pred CCccccccccccCchhhcc--------------------ccHHHH-------HHHHHHcCCCEEEEecCCchh--hHHHH
Q psy9396 2 IPQFIHLRLHSEYSIIDGL--------------------LRINDV-------IEAAANDYQPALAITDLSNLF--GIIKF 52 (1149)
Q Consensus 2 ~~~fv~LHvHS~ySlldg~--------------------~~ieeL-------V~~Ake~G~~AlAITDH~nl~--G~~~f 52 (1149)
.|.|++.|+|...|++.|. .++++. +..+...|..++. ||+..+ ....+
T Consensus 44 ~PGlId~H~Hl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~GvTtv~--d~~~~~~~~~~~~ 121 (401)
T TIGR02967 44 MPGFIDTHIHYPQTEMIASYGEQLLEWLEKYTFPTEARFADPDHAEEVAEFFLDELLRNGTTTAL--VFATVHPESVDAL 121 (401)
T ss_pred ecceeecccCchhhhhcccCCchHHHHHhhCcCccccccCCHHHHHHHHHHHHHHHHhCCCcEEE--eccccCHHHHHHH
Confidence 3569999999876644321 123332 2456778998876 776554 23467
Q ss_pred HHHHHhCCCeeEeeeee
Q psy9396 53 YKSAYNKGIKPIIGCDV 69 (1149)
Q Consensus 53 ~~~ak~~GIKpIiG~Ei 69 (1149)
.+++++.|++.+.|...
T Consensus 122 ~~a~~~~G~R~~~~~~~ 138 (401)
T TIGR02967 122 FEAALKRGMRMIAGKVL 138 (401)
T ss_pred HHHHHHCCCeEEEeeee
Confidence 78888999988877643
No 212
>TIGR00573 dnaq exonuclease, DNA polymerase III, epsilon subunit family. All proteins in this family for which functions are known are components of the DNA polymerase III complex (epsilon subunit). There is, however, an outgroup that includes paralogs in some gamma-proteobacteria and the n-terminal region of DinG from some low GC gram positive bacteria. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.05 E-value=22 Score=38.82 Aligned_cols=28 Identities=14% Similarity=0.226 Sum_probs=25.4
Q ss_pred CCCccEEEEEcccHHHHHHHHHHHHHHH
Q psy9396 78 KKPSRLLLLVKNNNGYLQLCELLSKAYI 105 (1149)
Q Consensus 78 ~~~~hlllLAkN~~Gy~nL~kL~S~~~~ 105 (1149)
.+.+|++.+|+|..|.+||++++|.+++
T Consensus 188 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 215 (217)
T TIGR00573 188 SRPYHAIKSIVKKDMLLKLIKAVSTELQ 215 (217)
T ss_pred cCCccceEeeeccccccceeecCHHhHh
Confidence 4569999999999999999999999865
No 213
>PRK11508 sulfur transfer protein TusE; Provisional
Probab=26.67 E-value=93 Score=30.50 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=12.1
Q ss_pred CchHhHHHHHHHHhCc
Q psy9396 411 EGRDRVIQYVKDRYGK 426 (1149)
Q Consensus 411 ~~R~~vi~yv~~kYG~ 426 (1149)
+.--+||+|+++-|=+
T Consensus 41 ~~HW~VI~~lR~~y~e 56 (109)
T PRK11508 41 PEHWEVVRFVRDFYLE 56 (109)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456799999998854
No 214
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=26.58 E-value=1.3e+02 Score=34.03 Aligned_cols=43 Identities=21% Similarity=0.186 Sum_probs=19.1
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhCCCeeEe
Q psy9396 22 RINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPII 65 (1149)
Q Consensus 22 ~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~GIKpIi 65 (1149)
.+++.++.|++.|.+++-|-|-- +--..++.+.|+++|+.+|+
T Consensus 105 G~e~f~~~~~~aGvdGviipDLp-~ee~~~~~~~~~~~gl~~I~ 147 (258)
T PRK13111 105 GVERFAADAAEAGVDGLIIPDLP-PEEAEELRAAAKKHGLDLIF 147 (258)
T ss_pred CHHHHHHHHHHcCCcEEEECCCC-HHHHHHHHHHHHHcCCcEEE
Confidence 34444555555555555554432 22233444444444444443
No 215
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=26.53 E-value=1.4e+02 Score=25.95 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhc
Q psy9396 712 SEMIEHRKFFQNGAIKYG-LSKHKANEIFNEIEKFA 746 (1149)
Q Consensus 712 ~~m~~~~~~F~~ga~~~g-~~~~~a~~i~~~i~~fa 746 (1149)
..|-+.+...|+-.++.| ++++.|+.+-+.|+.-.
T Consensus 14 ~qm~e~kK~~idk~Ve~G~iTqeqAd~ik~~id~~~ 49 (59)
T PF10925_consen 14 KQMLELKKQIIDKYVEAGVITQEQADAIKKHIDQRQ 49 (59)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 457788899999999998 89999999988887643
No 216
>PRK04053 rps13p 30S ribosomal protein S13P; Reviewed
Probab=25.81 E-value=1.3e+02 Score=31.09 Aligned_cols=48 Identities=25% Similarity=0.412 Sum_probs=32.7
Q ss_pred CCCeEEecccccCCccHHHHHHHHHHHhcCCCCCHHHHHhhcccCCCCHHHHHHHHH
Q psy9396 827 KHKKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLIN 883 (1149)
Q Consensus 827 ~~~~I~~gl~~Ikgvg~~~~~~i~~~r~~g~f~~~~df~~r~~~~~~~~~~le~Li~ 883 (1149)
++..|.++|..|+|||...|..|.+.=.-.|. .++ +.++...++.|..
T Consensus 19 ~~k~i~~aLt~IyGIG~~~a~~Ic~~lgi~~~-------~~~--~~Lt~~qi~~l~~ 66 (149)
T PRK04053 19 GTKPVEYALTGIKGIGRRTARAIARKLGLDPN-------AKL--GYLSDEEIEKIEE 66 (149)
T ss_pred CCCEEeeeccccccccHHHHHHHHHHcCcCCC-------Ccc--CcCCHHHHHHHHH
Confidence 35789999999999999999999764321122 122 3466666666643
No 217
>PLN02591 tryptophan synthase
Probab=25.54 E-value=1.3e+02 Score=33.77 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=12.6
Q ss_pred CEEEEecCCc--hhhHHHHHHHHHhCCC
Q psy9396 36 PALAITDLSN--LFGIIKFYKSAYNKGI 61 (1149)
Q Consensus 36 ~AlAITDH~n--l~G~~~f~~~ak~~GI 61 (1149)
+-+-+|=.|. -||..+|++.|++.|+
T Consensus 80 p~ilm~Y~N~i~~~G~~~F~~~~~~aGv 107 (250)
T PLN02591 80 PIVLFTYYNPILKRGIDKFMATIKEAGV 107 (250)
T ss_pred CEEEEecccHHHHhHHHHHHHHHHHcCC
Confidence 3444444443 2344555555555554
No 218
>PLN02433 uroporphyrinogen decarboxylase
Probab=25.46 E-value=6.3e+02 Score=29.60 Aligned_cols=160 Identities=14% Similarity=0.047 Sum_probs=85.3
Q ss_pred HHHHHHHHHHcCCCEEEEecCC-chhhHHHHHHHHHhCCCeeEeeeeeeecccccCCCCccEEEEEcccHHHHHHHHHHH
Q psy9396 23 INDVIEAAANDYQPALAITDLS-NLFGIIKFYKSAYNKGIKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLS 101 (1149)
Q Consensus 23 ieeLV~~Ake~G~~AlAITDH~-nl~G~~~f~~~ak~~GIKpIiG~Ei~v~~~~~~~~~~hlllLAkN~~Gy~nL~kL~S 101 (1149)
.-++++...+.|.+.+.|.|+. .+.+-..|.+.+...--+.+-.+.-. .+ ...+++...... .++....
T Consensus 181 ~~~~~~~~ieaGa~~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~-~~------~~~~ilh~cG~~---~~~~~~~ 250 (345)
T PLN02433 181 VIEYVDYQIDAGAQVVQIFDSWAGHLSPVDFEEFSKPYLEKIVDEVKAR-HP------DVPLILYANGSG---GLLERLA 250 (345)
T ss_pred HHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHh-CC------CCCEEEEeCCCH---HHHHHHH
Confidence 4566777778999999999963 23333344333321100110000000 00 123455544443 2222222
Q ss_pred HHHHhhccCCcccccHHHHhccccCCCeEEEeCCCcchHHHHHhcCChHHHHHHHHHHHHhCCCCeEEEEccCCCcc--h
Q psy9396 102 KAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPN--M 179 (1149)
Q Consensus 102 ~~~~~~~~~~~p~i~~e~L~~~~~~~glIiis~~~~g~i~~~l~~~~~~~a~~~~~~~~~~f~~~~ylEi~~~~~~~--~ 179 (1149)
....+.. .-...+++.+.++ ...+-+++-|.... .++.|..++.++..+.+.+.++.+=|+=-.-|+.+. .
T Consensus 251 ~~~~~~i-~~d~~~dl~e~~~--~~g~~~~l~GNi~p----~ll~gt~e~i~~~v~~~i~~~~~~g~Il~~Gc~i~~~tp 323 (345)
T PLN02433 251 GTGVDVI-GLDWTVDMADARR--RLGSDVAVQGNVDP----AVLFGSKEAIEKEVRDVVKKAGPQGHILNLGHGVLVGTP 323 (345)
T ss_pred hcCCCEE-EcCCCCCHHHHHH--HhCCCeEEEeCCCc----hhhCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCC
Confidence 2111111 1134577777776 44444556554442 356788888888888887777532254334455542 2
Q ss_pred HHHHHHHHHHHHhcCCCEEE
Q psy9396 180 NFQIQQFINIASNINLPIVA 199 (1149)
Q Consensus 180 ~~~n~~l~~lA~~~~iplVa 199 (1149)
.+..+.+++.+++++-++++
T Consensus 324 ~eNi~a~v~av~~~~~~~~~ 343 (345)
T PLN02433 324 EENVAHFFDVARELRYEMIA 343 (345)
T ss_pred HHHHHHHHHHHHHhChhhhc
Confidence 56678889999999888875
No 219
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=25.35 E-value=1e+02 Score=24.96 Aligned_cols=39 Identities=23% Similarity=0.355 Sum_probs=23.7
Q ss_pred CCCchHhHHHHHHHHhCcccEEEEEecccchhhhHHHHHHHhcCCCHHHHHHHHccC
Q psy9396 409 CPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLI 465 (1149)
Q Consensus 409 ~~~~R~~vi~yv~~kYG~~~Va~I~Tf~t~~ak~airdv~r~lg~~~~~~~~i~k~i 465 (1149)
...+|-+++..+.+ |. ..+++|+.||++...+.++.|..
T Consensus 3 ~~~~R~~ii~l~~~--G~----------------s~~~ia~~lgvs~~Tv~~w~kr~ 41 (50)
T PF13384_consen 3 SEERRAQIIRLLRE--GW----------------SIREIAKRLGVSRSTVYRWIKRY 41 (50)
T ss_dssp -------HHHHHHH--T------------------HHHHHHHHTS-HHHHHHHHT--
T ss_pred chhHHHHHHHHHHC--CC----------------CHHHHHHHHCcCHHHHHHHHHHc
Confidence 34577788887777 53 57899999999999999998764
No 220
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=25.35 E-value=52 Score=32.49 Aligned_cols=45 Identities=22% Similarity=0.331 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHhCCCc----------------ccCCCcchhHHHHHHH---hcCCccCCCCCC
Q psy9396 343 FLIVSDFIQWAKNNSIP----------------VGPGRGSGASSLVAYS---LSITDIDPLSYN 387 (1149)
Q Consensus 343 FLiv~D~v~~ak~~gi~----------------vGpGRGSaagSlVaY~---LgIT~vDPl~~~ 387 (1149)
.+...|+.+.|++.||. .||||=||==+|..-= ..|+||-|++||
T Consensus 49 q~aa~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~I~DvTpiPhN 112 (114)
T TIGR03628 49 MQAAGRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIEDVTPIPHD 112 (114)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEEEEEcCCCCCC
Confidence 56788899999998875 3677767767776653 356789999987
No 221
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=25.28 E-value=97 Score=37.66 Aligned_cols=65 Identities=15% Similarity=0.115 Sum_probs=38.2
Q ss_pred CccccccccccCchhhcc---------------------ccHHHH-------HHHHHHcCCCEEEEecCCchh------h
Q psy9396 3 PQFIHLRLHSEYSIIDGL---------------------LRINDV-------IEAAANDYQPALAITDLSNLF------G 48 (1149)
Q Consensus 3 ~~fv~LHvHS~ySlldg~---------------------~~ieeL-------V~~Ake~G~~AlAITDH~nl~------G 48 (1149)
|.||+.|+|..+|++.|. .+++++ +..+-+.|..++. ||...+ +
T Consensus 59 PGlVn~H~H~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~Ttv~--d~~~~~~~~~~~~ 136 (451)
T PRK08203 59 PGLVNTHHHFYQTLTRALPAAQDAELFPWLTTLYPVWARLTPEMVRVATQTALAELLLSGCTTSS--DHHYLFPNGLRDA 136 (451)
T ss_pred cceEeccccccchhcccccccCCCcHHHHHHHHhHHHHhCCHHHHHHHHHHHHHHHHhcCcCEEE--cceeeccccccch
Confidence 579999999999876554 112222 1223355666665 543221 2
Q ss_pred HHHHHHHHHhCCCeeEeeeee
Q psy9396 49 IIKFYKSAYNKGIKPIIGCDV 69 (1149)
Q Consensus 49 ~~~f~~~ak~~GIKpIiG~Ei 69 (1149)
+....+++.+.|++.+++...
T Consensus 137 ~~~~~~a~~~~G~R~~~~~~~ 157 (451)
T PRK08203 137 LDDQIEAAREIGMRFHATRGS 157 (451)
T ss_pred HHHHHHHHHHcCCeEEEecce
Confidence 345566677778877776433
No 222
>TIGR02844 spore_III_D sporulation transcriptional regulator SpoIIID. Members of this protein are the transcriptional regulator SpoIIID, or stage III sporulation protein D. It is present in genomes if and only if the species is capable of endospore formation as occurs in the model species Bacillus subtilis. SpoIIID is a DNA binding protein that, in B. subtilis, downregulates many genes but also turns on ten genes.
Probab=24.33 E-value=59 Score=30.05 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=31.1
Q ss_pred ecCCCchHhHHHHHHHHhCcccEEEEEecccchhhhHHHHHHHhcCCCHHHHHHH
Q psy9396 407 DFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSI 461 (1149)
Q Consensus 407 Df~~~~R~~vi~yv~~kYG~~~Va~I~Tf~t~~ak~airdv~r~lg~~~~~~~~i 461 (1149)
|+-.+|+.++.+||.+ |.- -++|||+.+|++...+.+.
T Consensus 2 ~~~~~R~~~I~e~l~~--~~~---------------ti~dvA~~~gvS~~TVsr~ 39 (80)
T TIGR02844 2 DYIEERVLEIGKYIVE--TKA---------------TVRETAKVFGVSKSTVHKD 39 (80)
T ss_pred CcHHHHHHHHHHHHHH--CCC---------------CHHHHHHHhCCCHHHHHHH
Confidence 4456799999999998 742 4899999999999888763
No 223
>KOG1653|consensus
Probab=24.13 E-value=1.2e+02 Score=31.62 Aligned_cols=54 Identities=20% Similarity=0.117 Sum_probs=37.4
Q ss_pred ceEEEEEchHHHHHHH-hhccCCcEEEEEEEEEeec----cCCc-----eEEEEccccccHHHH
Q psy9396 1016 NSVEVIINNQLYEKNK-NILKENELLIVSGKVLEDR----FLKN-----IRINAEKIFDINVAR 1069 (1149)
Q Consensus 1016 g~ie~vvFp~~y~~~~-~~l~~~~~v~v~G~v~~~~----~~~~-----~~ii~~~i~~l~~~~ 1069 (1149)
..=-+.||++....+. ..+++|..++|+|+++.+. ..+. .-+|++.+..|.++.
T Consensus 105 qWHRVsVf~~~L~d~~~k~lkKGsriyveG~iey~g~~~d~~g~~~r~~t~iIa~~v~Fl~~a~ 168 (175)
T KOG1653|consen 105 QWHRVSVFNEVLADYALKYLKKGSRIYVEGKIEYRGENDDIQGNVKRIPTIIIARDVSFLIDAI 168 (175)
T ss_pred eeEEEEeeCchHHHHHHHHhcCCCEEEEeeeEEeeeeeccccCceeecceEEEechhHHHHHHh
Confidence 3345889997777654 6789999999999999731 1121 136777777776553
No 224
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=24.10 E-value=1.2e+02 Score=35.78 Aligned_cols=65 Identities=20% Similarity=0.368 Sum_probs=38.2
Q ss_pred CCccccccccccCchhhcc--------------------ccHHHHHHH-------HHHcCCCEEEEecCCchhhHHHHHH
Q psy9396 2 IPQFIHLRLHSEYSIIDGL--------------------LRINDVIEA-------AANDYQPALAITDLSNLFGIIKFYK 54 (1149)
Q Consensus 2 ~~~fv~LHvHS~ySlldg~--------------------~~ieeLV~~-------Ake~G~~AlAITDH~nl~G~~~f~~ 54 (1149)
.|.|++.|+|..+|...|. .+.+++... +...|..++. ||++..+ ....+
T Consensus 55 ~PGlid~H~Hl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~--d~~~~~~-~~~~~ 131 (411)
T cd01298 55 MPGLVNTHTHLAMTLLRGLADDLPLMEWLKDLIWPLERLLTEEDVYLGALLALAEMIRSGTTTFA--DMYFFYP-DAVAE 131 (411)
T ss_pred ccCccccccchhhHHhhcccCCCCHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHHHHhcCccEEE--Cccccch-HHHHH
Confidence 3579999999877644222 234444332 3357777654 7765443 34445
Q ss_pred HHHhCCCeeEeeeee
Q psy9396 55 SAYNKGIKPIIGCDV 69 (1149)
Q Consensus 55 ~ak~~GIKpIiG~Ei 69 (1149)
.+...|++..++..+
T Consensus 132 ~~~~~g~r~~~~~~~ 146 (411)
T cd01298 132 AAEELGIRAVLGRGI 146 (411)
T ss_pred HHHHhCCeEEEEcce
Confidence 566677777666554
No 225
>PTZ00134 40S ribosomal protein S18; Provisional
Probab=24.00 E-value=73 Score=33.15 Aligned_cols=48 Identities=23% Similarity=0.375 Sum_probs=33.0
Q ss_pred CCCeEEecccccCCccHHHHHHHHHHHhcCCCCCHHHHHhhcccCCCCHHHHHHHHH
Q psy9396 827 KHKKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLIN 883 (1149)
Q Consensus 827 ~~~~I~~gl~~Ikgvg~~~~~~i~~~r~~g~f~~~~df~~r~~~~~~~~~~le~Li~ 883 (1149)
++..|.++|..|+|||...|..|...=.-.|- .|+ +.++...++.|.+
T Consensus 24 ~~K~v~~aLt~I~GIG~~~A~~I~~~lgi~~~-------~~~--~~Lt~~qi~~l~~ 71 (154)
T PTZ00134 24 GKRKVPYALTAIKGIGRRFAYLVCKKAGIDVT-------KRA--GELTAEEIEKIVE 71 (154)
T ss_pred CCCEEEEeecccccccHHHHHHHHHHcCcCcC-------CCc--ccCCHHHHHHHHH
Confidence 45789999999999999999999874321111 222 3466666666643
No 226
>cd04476 RPA1_DBD_C RPA1_DBD_C: A subfamily of OB folds corresponding to the C-terminal OB fold, the ssDNA-binding domain (DBD)-C, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-C, RPA1 contains three other OB folds: DBD-A, DBD-B, and RPA1N. The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B. RPA1 DBD-C is involved in DNA binding and trimerization. It contains two structural insertions not found to date in other OB-folds: a zinc ribbon and a three-helix bundle. RPA1 DBD-C also contains a Cys4-type zinc-binding motif, which plays a role in the ssDNA binding fun
Probab=23.57 E-value=2.6e+02 Score=28.97 Aligned_cols=62 Identities=15% Similarity=0.234 Sum_probs=43.5
Q ss_pred EEEEEEEeCCceEEEEEchHHHHHH--------Hh-----------hc--cCCcEEEEEEEEEeeccCC--ceEEEEccc
Q psy9396 1006 ILIIVIDDNSNSVEVIINNQLYEKN--------KN-----------IL--KENELLIVSGKVLEDRFLK--NIRINAEKI 1062 (1149)
Q Consensus 1006 mafltleD~tg~ie~vvFp~~y~~~--------~~-----------~l--~~~~~v~v~G~v~~~~~~~--~~~ii~~~i 1062 (1149)
+.-+.+.|.||.+.+++|.+.-++. .. .+ -.+..+.+.+++..+.+++ ..++.+.++
T Consensus 69 ~l~~~i~D~Tg~~~~~~F~~~ae~l~G~sa~el~~~~~~~~~~~~~~i~~~~gk~~~f~v~~~~~~y~~e~~~~~~v~~i 148 (166)
T cd04476 69 ILSLNVADHTGEAWLTLFDEVAEQIFGKSAEELLELKEEDPDAFPDAIQDLVGKTFLFRVSVKEETYNDEGRIRYTVVKV 148 (166)
T ss_pred EEEEEEEeCCCCEEEEEehHHHHHHhCCCHHHHHHHhhcCHHHHHHHHHHhhCceEEEEEEEEehhcCCcceEEEEEEEc
Confidence 3469999999999999998776654 11 11 1255677778887766665 567788777
Q ss_pred cccHH
Q psy9396 1063 FDINV 1067 (1149)
Q Consensus 1063 ~~l~~ 1067 (1149)
.++..
T Consensus 149 ~~~~~ 153 (166)
T cd04476 149 APVDY 153 (166)
T ss_pred ccCCH
Confidence 77764
No 227
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=23.38 E-value=4.4e+02 Score=27.33 Aligned_cols=69 Identities=14% Similarity=0.274 Sum_probs=46.8
Q ss_pred CCceEEEEEEEeeeEeeecCC-cEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeeccCCceEEEEccc
Q psy9396 984 TYSCTVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062 (1149)
Q Consensus 984 ~~~v~v~G~I~~vk~~~TK~G-~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~~~i 1062 (1149)
+.+++++|+|..--..++-.+ ++. +++.|....+.|.-= -. .-+++.+|+-|+.+|..+. +..+++++|
T Consensus 51 G~rlR~GGlV~~GSv~R~~~~~~v~-F~vtD~~~~v~V~Y~-Gi---LPDLFREGQgVVa~G~~~~-----~~~f~A~~v 120 (153)
T COG2332 51 GQRLRLGGLVEAGSVQRDPGSLKVS-FVVTDGNKSVTVSYE-GI---LPDLFREGQGVVAEGQLQG-----GGVFEAKEV 120 (153)
T ss_pred CcEEEEeeeEeeceEEecCCCcEEE-EEEecCCceEEEEEe-cc---CchhhhcCCeEEEEEEecC-----CCEEEeeeh
Confidence 348999999997766665555 444 455699988887621 11 1235678999999999963 245666665
No 228
>TIGR01440 conserved hypothetical protein TIGR01440. Members of this family are uncharacterized proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome.
Probab=23.28 E-value=2.9e+02 Score=29.13 Aligned_cols=75 Identities=11% Similarity=0.220 Sum_probs=51.3
Q ss_pred cCCCeEEEeCCCcchHHH-HH-hcCChHHHHHHHHHHHHhCC-CCeEEEEccCCCcchHHHHHHHH---HHHHhcCCCEE
Q psy9396 125 YQDGLIALSGAHLGDIGI-AV-QNGRNDIAENFARRWSKIFP-DNFYIEIQRFKQPNMNFQIQQFI---NIASNINLPIV 198 (1149)
Q Consensus 125 ~~~glIiis~~~~g~i~~-~l-~~~~~~~a~~~~~~~~~~f~-~~~ylEi~~~~~~~~~~~n~~l~---~lA~~~~iplV 198 (1149)
..+|=|+..||..|++.- .+ ..+..+-++..++.+.+... ..+|+-+|.- +.+|+.++ +.|+++++..|
T Consensus 16 l~~g~i~VvGcSTSEV~G~~IG~~ss~eva~~i~~~l~~~~~~~gi~lA~Q~C-----EHlNRALvvEr~~a~~~~le~V 90 (172)
T TIGR01440 16 LKKGDLFVIGCSTSEVIGGKIGTNSSMEVAETIVNALDVVLKKTGVTLAFQGC-----EHINRALVMERSVAEPLGMEEV 90 (172)
T ss_pred CCCCCEEEEecchHHhCCcccCCcChHHHHHHHHHHHHHHhhhcCeEEEEech-----hhhhHHHHHhHHHHHHcCCceE
Confidence 556778888998887641 11 22356667777666666554 6799998864 45676664 47899999999
Q ss_pred Ee-cCcc
Q psy9396 199 AT-HPIQ 204 (1149)
Q Consensus 199 at-nDvh 204 (1149)
.. +..|
T Consensus 91 ~VvP~~~ 97 (172)
T TIGR01440 91 SVVPDLH 97 (172)
T ss_pred EEecCCC
Confidence 87 5544
No 229
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=23.26 E-value=2.2e+02 Score=28.72 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=37.3
Q ss_pred cccHHHHHHHHHHcCCCEEEEecCC--chhhHHHHHHHHHhCCC---eeEeeee
Q psy9396 20 LLRINDVIEAAANDYQPALAITDLS--NLFGIIKFYKSAYNKGI---KPIIGCD 68 (1149)
Q Consensus 20 ~~~ieeLV~~Ake~G~~AlAITDH~--nl~G~~~f~~~ak~~GI---KpIiG~E 68 (1149)
-.+++++++.|++.+-+.|+++=.. .+-...+..+.++++|+ ++++|--
T Consensus 36 ~v~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~ 89 (128)
T cd02072 36 LSPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGN 89 (128)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECC
Confidence 3689999999999999999998854 45566777777877754 5555533
No 230
>PF08646 Rep_fac-A_C: Replication factor-A C terminal domain; InterPro: IPR013955 Replication factor A (RP-A) binds and subsequently stabilises single-stranded DNA intermediates and thus prevents complementary DNA from reannealing. It also plays an essential role in several cellular processes in DNA metabolism including replication, recombination and repair of DNA []. Replication factor-A protein is also known as Replication protein A 70 kDa DNA-binding subunit. This entry is found at the C terminus of Replication factor A.; PDB: 1L1O_F 3U50_C.
Probab=23.03 E-value=3.2e+02 Score=27.73 Aligned_cols=65 Identities=17% Similarity=0.228 Sum_probs=38.9
Q ss_pred EEEEEEEeCCceEEEEEchHHHHHHH-------------------hhcc--CCcEEEEEEEEEeeccCC--ceEEEEccc
Q psy9396 1006 ILIIVIDDNSNSVEVIINNQLYEKNK-------------------NILK--ENELLIVSGKVLEDRFLK--NIRINAEKI 1062 (1149)
Q Consensus 1006 mafltleD~tg~ie~vvFp~~y~~~~-------------------~~l~--~~~~v~v~G~v~~~~~~~--~~~ii~~~i 1062 (1149)
+.-+.+.|.||.+.+++|.+.-+++= ..+. .+.-+.++.+++.+.+++ .+++.+.++
T Consensus 55 ~l~~~i~D~tg~~~~~~F~~~a~~l~G~~a~el~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~~~~y~~e~r~~~~v~~i 134 (146)
T PF08646_consen 55 RLSLKISDGTGSIWVTLFDEEAEQLLGMSADELKELKEEDPEEFPKIIKKLLGKEFVFRVRVKKESYNDESRVKYTVVRI 134 (146)
T ss_dssp EEEEEEEETTEEEEEEEEHHHHHHHHCCHHCCCHHHCCC-HHHHHHHHHCTTT-EEEEEEEEEE--------EEEEEEEE
T ss_pred EEEEEEEeCCCeEEEEEEhHHHHHHhCCCHHHHHHHHhhchhHHHHHHHHhhCcEEEEEEEEEEhhhCCceEEEEEEEEe
Confidence 34689999999999999998766431 1111 234566666665554444 467899999
Q ss_pred cccHHHHH
Q psy9396 1063 FDINVARI 1070 (1149)
Q Consensus 1063 ~~l~~~~~ 1070 (1149)
.|++-..+
T Consensus 135 ~~vd~~~e 142 (146)
T PF08646_consen 135 EPVDYAEE 142 (146)
T ss_dssp EE--HHHH
T ss_pred EeCCHHHH
Confidence 98876543
No 231
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=22.20 E-value=1.5e+02 Score=31.65 Aligned_cols=44 Identities=16% Similarity=0.052 Sum_probs=31.5
Q ss_pred cHHHH-HHHHHHcCCCEEEEecCCchhh--HHHHHHHHHhCCCeeEeee
Q psy9396 22 RINDV-IEAAANDYQPALAITDLSNLFG--IIKFYKSAYNKGIKPIIGC 67 (1149)
Q Consensus 22 ~ieeL-V~~Ake~G~~AlAITDH~nl~G--~~~f~~~ak~~GIKpIiG~ 67 (1149)
.+... ++.|.+.|-+++.+ |...-+ ..++.+.|++.|+++++++
T Consensus 63 d~~~~~~~~~~~~Gad~i~v--h~~~~~~~~~~~i~~~~~~g~~~~~~~ 109 (206)
T TIGR03128 63 DAGEYEAEQAFAAGADIVTV--LGVADDATIKGAVKAAKKHGKEVQVDL 109 (206)
T ss_pred cchHHHHHHHHHcCCCEEEE--eccCCHHHHHHHHHHHHHcCCEEEEEe
Confidence 34445 89999999998874 333221 3578888999999998863
No 232
>KOG0556|consensus
Probab=21.69 E-value=3.8e+02 Score=32.14 Aligned_cols=68 Identities=19% Similarity=0.366 Sum_probs=49.8
Q ss_pred ccccccCCC---CceEEEEEEEeeeEeeec-CCcEEEEEEEeCCceEEEEEc-------hHHHHHHHhhccCCcEEEEEE
Q psy9396 976 IYLSELKPT---YSCTVSGIITELKLKTTY-RGKILIIVIDDNSNSVEVIIN-------NQLYEKNKNILKENELLIVSG 1044 (1149)
Q Consensus 976 ~~i~~l~~~---~~v~v~G~I~~vk~~~TK-~G~mafltleD~tg~ie~vvF-------p~~y~~~~~~l~~~~~v~v~G 1044 (1149)
+.++||... +.|.|=|-|- +|+ +|+++|++|-+....+.++++ ..+.-+|...+...++|.|.|
T Consensus 71 ~~v~dl~~~~~~~~V~vRgrVh-----tsr~~GK~~FlvLRq~~~tVQ~~~~~~~~~~isk~Mvkf~~~is~ESiV~v~g 145 (533)
T KOG0556|consen 71 TDVSDLDESNDGSEVLVRGRVH-----TSRLKGKLCFLVLRQQGSTVQCLVAVNEDGTISKQMVKFAGSISKESIVDVRG 145 (533)
T ss_pred eehhhhhhhcCCceEEEEEEEe-----eccccceEEEEEEeccCceEEEEEEcCCCchHHHHHHHHHhhcCcceEEEEEE
Confidence 456666542 2455544332 333 368999999999999999994 456677888899999999999
Q ss_pred EEEe
Q psy9396 1045 KVLE 1048 (1149)
Q Consensus 1045 ~v~~ 1048 (1149)
.|..
T Consensus 146 ~v~k 149 (533)
T KOG0556|consen 146 VVVK 149 (533)
T ss_pred EEec
Confidence 9985
No 233
>COG2183 Tex Transcriptional accessory protein [Transcription]
Probab=21.60 E-value=69 Score=41.14 Aligned_cols=53 Identities=23% Similarity=0.252 Sum_probs=44.9
Q ss_pred cccccCCccHHHHHHHHHHHh-cCCCCCHHHHHhhcccCCCCHHHHHHHHHcCCCCCcc
Q psy9396 834 GLGAIKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891 (1149)
Q Consensus 834 gl~~Ikgvg~~~~~~i~~~r~-~g~f~~~~df~~r~~~~~~~~~~le~Li~~Gafd~~~ 891 (1149)
=|+.|.|+|...|+.|++.|+ +|+|++-.++.+- ..+..+++|.- +|+|..-+
T Consensus 510 lL~~VsGL~kt~A~nIv~~r~~~g~f~~Rk~L~kv---~rlg~k~Feq~--aGFLrI~~ 563 (780)
T COG2183 510 LLSYVSGLNKTLAKNIVAYRDENGAFDNRKQLKKV---PRLGPKAFEQC--AGFLRIPN 563 (780)
T ss_pred HHHHHhhhchhHHHHHHHHHhhcCCcccHHHHhcC---CCcChhhhhhc--ceeeEecC
Confidence 578999999999999999999 8999999998765 56788888885 77776554
No 234
>PRK06038 N-ethylammeline chlorohydrolase; Provisional
Probab=21.41 E-value=1.4e+02 Score=36.05 Aligned_cols=60 Identities=17% Similarity=0.358 Sum_probs=34.4
Q ss_pred CccccccccccCchhhcc--------------------ccHHHHHH-------HHHHcCCCEEEEecCCchhhHHHHHHH
Q psy9396 3 PQFIHLRLHSEYSIIDGL--------------------LRINDVIE-------AAANDYQPALAITDLSNLFGIIKFYKS 55 (1149)
Q Consensus 3 ~~fv~LHvHS~ySlldg~--------------------~~ieeLV~-------~Ake~G~~AlAITDH~nl~G~~~f~~~ 55 (1149)
|.||+.|+|...|.+-|. .+++++.. .+-+.|..++ -|+. ++.....++
T Consensus 55 PG~vd~H~H~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv--~D~~--~~~~~~~~a 130 (430)
T PRK06038 55 PGLVNTHTHAAMTLFRGYADDLPLAEWLNDHIWPAEAKLTAEDVYAGSLLACLEMIKSGTTSF--ADMY--FYMDEVAKA 130 (430)
T ss_pred cCeeecccCcchhhhhhccCCCCHHHHHHhhhhhchhcCCHHHHHHHHHHHHHHHHhcCceeE--Eccc--cCHHHHHHH
Confidence 579999999988765443 23333322 2344566543 3543 233455666
Q ss_pred HHhCCCeeEee
Q psy9396 56 AYNKGIKPIIG 66 (1149)
Q Consensus 56 ak~~GIKpIiG 66 (1149)
+.+.||+.+.|
T Consensus 131 ~~~~GiR~~~~ 141 (430)
T PRK06038 131 VEESGLRAALS 141 (430)
T ss_pred HHHhCCeEEEE
Confidence 77777776654
No 235
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=21.17 E-value=9.2e+02 Score=26.34 Aligned_cols=153 Identities=13% Similarity=0.172 Sum_probs=0.0
Q ss_pred cccHHHHHHHHHHcC-CCEEEEecCCchhhHHHHHHHHHhCCCeeEeeeeeeecccccCCCCccEEEEEc-ccHHHHHHH
Q psy9396 20 LLRINDVIEAAANDY-QPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIENKKPSRLLLLVK-NNNGYLQLC 97 (1149)
Q Consensus 20 ~~~ieeLV~~Ake~G-~~AlAITDH~nl~G~~~f~~~ak~~GIKpIiG~Ei~v~~~~~~~~~~hlllLAk-N~~Gy~nL~ 97 (1149)
.++++.+--.++.-+ +=.+++|. +.|++.|+.|..-. +.+.....+.+.+=++ ..+|.-..=
T Consensus 39 ~vT~e~i~fm~~~a~GliC~~lt~-----------e~~~~L~Lp~Mv~~-----n~~~~~taFtVsVd~~~t~TGISa~D 102 (203)
T COG0108 39 AVTPEQIAFMRRHASGLICVALTE-----------ERAKRLGLPPMVDN-----NTDAHGTAFTVSVDARETTTGISAAD 102 (203)
T ss_pred hCCHHHHHHHHHhCCeeEEEeCCH-----------HHHHhCCCcccccc-----CCCCCCCceEEEEecccCcCCcCHHH
Q ss_pred HHHHHHHHhhccCCcccccHHHHhccccCCCeEEEeCCCcchHHHHHhcCChHHHHHHHHHHHHhCCCCeEEEEccCCCc
Q psy9396 98 ELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQP 177 (1149)
Q Consensus 98 kL~S~~~~~~~~~~~p~i~~e~L~~~~~~~glIiis~~~~g~i~~~l~~~~~~~a~~~~~~~~~~f~~~~ylEi~~~~~~ 177 (1149)
+..|...+ ..|.-..+++.. ..++..+-+-..|-+.+ .|..|.+.+++ ++..+-|-.++.|+.+. .
T Consensus 103 Ra~TIr~l-----~~~~~~~~df~~---PGHVfpL~A~~ggVl~R---~GHTEasVdLa-rlAGl~Pa~VicEi~~~--d 168 (203)
T COG0108 103 RALTIRAL-----ADPGAKPSDFRR---PGHVFPLRAKDGGVLER---RGHTEAAVDLA-RLAGLKPAGVICEIMND--D 168 (203)
T ss_pred HHHHHHHH-----hcCCCCHHHcCC---CCCeeeeeeccCCeecc---CChHHHHHHHH-HHcCCCCcEEEEEEeCC--C
Q ss_pred chHHHHHHHHHHHHhcCCCEEEecC
Q psy9396 178 NMNFQIQQFINIASNINLPIVATHP 202 (1149)
Q Consensus 178 ~~~~~n~~l~~lA~~~~iplVatnD 202 (1149)
..-...+.+.++|+++|+|++-..|
T Consensus 169 G~mar~~~~~~fa~~h~l~~iti~d 193 (203)
T COG0108 169 GTMARLPELEEFAKEHGLPVITIED 193 (203)
T ss_pred ccccChHHHHHHHHHcCCcEEEHHH
No 236
>TIGR03629 arch_S13P archaeal ribosomal protein S13P. This model describes exclusively the archaeal ribosomal protein S13P. It excludes the homologous eukaryotic 40S ribosomal protein S18 and bacterial 30S ribosomal protein S13.
Probab=21.09 E-value=90 Score=32.13 Aligned_cols=27 Identities=33% Similarity=0.530 Sum_probs=23.5
Q ss_pred CCCeEEecccccCCccHHHHHHHHHHH
Q psy9396 827 KHKKIRYGLGAIKGTGKSTIEAIVTER 853 (1149)
Q Consensus 827 ~~~~I~~gl~~Ikgvg~~~~~~i~~~r 853 (1149)
++..|.++|..|+|||...|..|.+.=
T Consensus 15 ~~k~v~~aLt~I~GIG~~~a~~I~~~l 41 (144)
T TIGR03629 15 GNKPVEYALTGIKGIGRRFARAIARKL 41 (144)
T ss_pred CCCEEEEeecceeccCHHHHHHHHHHc
Confidence 457899999999999999999997643
No 237
>PRK13690 hypothetical protein; Provisional
Probab=21.02 E-value=3.3e+02 Score=29.03 Aligned_cols=73 Identities=15% Similarity=0.233 Sum_probs=51.3
Q ss_pred ccCCCeEEEeCCCcchHHH--HHhcCChHHHHHHHHHHHHhCC-CCeEEEEccCCCcchHHHHHHHH---HHHHhcCCCE
Q psy9396 124 KYQDGLIALSGAHLGDIGI--AVQNGRNDIAENFARRWSKIFP-DNFYIEIQRFKQPNMNFQIQQFI---NIASNINLPI 197 (1149)
Q Consensus 124 ~~~~glIiis~~~~g~i~~--~l~~~~~~~a~~~~~~~~~~f~-~~~ylEi~~~~~~~~~~~n~~l~---~lA~~~~ipl 197 (1149)
+...|=|+..||..|++.- .-..+..+-++..++.+.+... ..+|+-+|.- +.+|+.++ +.|.++++..
T Consensus 22 ~l~~g~i~VvGcSTSEV~G~~IGt~ss~eva~~i~~~l~~~~~~~gi~LA~QcC-----EHLNRALvvEr~~a~~~~le~ 96 (184)
T PRK13690 22 NLKPGQIFVLGCSTSEVLGERIGTAGSLEVAEAIVEALLEVLKETGIHLAVQGC-----EHLNRALVVEREVAEKYGLEI 96 (184)
T ss_pred CCCCCCEEEEecchHhhCCcccCCcChHHHHHHHHHHHHHHhhhcCcEEEEech-----hhhHHHHHHhHHHHHHcCCeE
Confidence 3567878888998887642 1123356777777777776664 6799999864 45677664 5889999998
Q ss_pred EEec
Q psy9396 198 VATH 201 (1149)
Q Consensus 198 Vatn 201 (1149)
|..-
T Consensus 97 V~Vv 100 (184)
T PRK13690 97 VTVV 100 (184)
T ss_pred EEEe
Confidence 8773
No 238
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=21.01 E-value=1.2e+02 Score=39.15 Aligned_cols=48 Identities=21% Similarity=0.323 Sum_probs=39.2
Q ss_pred ccCchhhccccHHHHHHHHHHcCCCEEEEecCCchhhH----HHHHHHHHhCCCeeE
Q psy9396 12 SEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGI----IKFYKSAYNKGIKPI 64 (1149)
Q Consensus 12 S~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~G~----~~f~~~ak~~GIKpI 64 (1149)
..++-.++.++|++++.-|++.|-+|| | -=||. ++|.+.|.++||..|
T Consensus 58 ~~~~Pi~aYL~IdeII~iAk~~gaDaI----h-PGYGfLSEn~efA~~c~eaGI~FI 109 (1149)
T COG1038 58 EGKGPVEAYLSIDEIIRIAKRSGADAI----H-PGYGFLSENPEFARACAEAGITFI 109 (1149)
T ss_pred CCCCchHHhccHHHHHHHHHHcCCCee----c-CCcccccCCHHHHHHHHHcCCEEe
Confidence 446667899999999999999999977 2 33454 699999999999763
No 239
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=20.93 E-value=4.5e+02 Score=26.42 Aligned_cols=68 Identities=19% Similarity=0.390 Sum_probs=39.5
Q ss_pred CCceEEEEEEE--eeeEeeecCCcEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeeccCCceEEEEcc
Q psy9396 984 TYSCTVSGIIT--ELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEK 1061 (1149)
Q Consensus 984 ~~~v~v~G~I~--~vk~~~TK~G~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~~~ 1061 (1149)
++.+++.|+|. +++... .+.-.-+++.|....+.|+ |... --+.+++|.-++|+|+...+ + .+.+++
T Consensus 50 ~~~vrv~G~V~~gSv~~~~--~~~~~~F~i~D~~~~i~V~-Y~G~---~Pd~F~eg~~VVv~G~~~~~---g--~F~A~~ 118 (131)
T PF03100_consen 50 GRKVRVGGLVVEGSVEYDP--DGNTLTFTITDGGKEIPVV-YTGP---LPDLFREGQGVVVEGRLGED---G--VFEATE 118 (131)
T ss_dssp TSEEEEEEEEECTTEEE-T--TSSEEEEEEE-SS-EEEEE-EES-----CTT--TTSEEEEEEEECCT---S--EEEEEE
T ss_pred CceEEEeeEEccCCEEEcC--CCCEEEEEEEECCcEEEEE-ECCC---CCccccCCCeEEEEEEECCC---C--EEEEEE
Confidence 34899999998 443332 3333446677888888754 4432 22457789999999998421 2 455555
Q ss_pred c
Q psy9396 1062 I 1062 (1149)
Q Consensus 1062 i 1062 (1149)
|
T Consensus 119 l 119 (131)
T PF03100_consen 119 L 119 (131)
T ss_dssp E
T ss_pred E
Confidence 4
No 240
>PLN02461 Probable pyruvate kinase
Probab=20.84 E-value=8.8e+02 Score=30.31 Aligned_cols=44 Identities=18% Similarity=0.253 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhcCCCEEEecC-----ccccCccCchHHHHHHHHHcCC
Q psy9396 181 FQIQQFINIASNINLPIVATHP-----IQFLKKTEFLAHEVRTCIAEGE 224 (1149)
Q Consensus 181 ~~n~~l~~lA~~~~iplVatnD-----vhyl~~eD~~~~~vL~aI~~g~ 224 (1149)
..-+.+++.|++.|.|++.... ++...|--+++-||-.||..|.
T Consensus 279 ~~Qk~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVanAV~dG~ 327 (511)
T PLN02461 279 LAQKMMIYKCNLAGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGT 327 (511)
T ss_pred HHHHHHHHHHHHcCCCeEEeehhHHHHhhCCCCchHHHHHHHHHHHhCC
Confidence 3456788999999999995432 2345688889999999987775
No 241
>PRK10027 cryptic adenine deaminase; Provisional
Probab=20.76 E-value=1.2e+02 Score=38.48 Aligned_cols=61 Identities=20% Similarity=0.184 Sum_probs=43.2
Q ss_pred CccccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCC--ch---hhHHHHHHHHHhCCCeeEeee
Q psy9396 3 PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLS--NL---FGIIKFYKSAYNKGIKPIIGC 67 (1149)
Q Consensus 3 ~~fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~--nl---~G~~~f~~~ak~~GIKpIiG~ 67 (1149)
|.|+|.|+|...|+ .+++++.+.|...|..++..-=|. |+ -|..-+.+.+++.++++-+.+
T Consensus 84 PGlIDaHvHiess~----~~p~~~a~aal~~G~TtVv~dPhei~nv~g~~gi~~~l~~a~~~p~~~~~~~ 149 (588)
T PRK10027 84 PGFIDAHLHIESSM----MTPVTFETATLPRGLTTVICDPHEIVNVMGEAGFAWFARCAEQARQNQYLQV 149 (588)
T ss_pred ECeEeccccCCccc----CCHhHHHHHHHhCceEEEEcCCCCcccCCCHHHHHHHHHHhhhCCCeeEEee
Confidence 56999999999885 478999999999999988762222 23 355566666666666554443
No 242
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=20.66 E-value=1.9e+02 Score=35.02 Aligned_cols=65 Identities=15% Similarity=0.220 Sum_probs=41.0
Q ss_pred CccccccccccCchhhccc---cHHHH-------------------------HHHHHHcCCCEEEEecCCchh--hHHHH
Q psy9396 3 PQFIHLRLHSEYSIIDGLL---RINDV-------------------------IEAAANDYQPALAITDLSNLF--GIIKF 52 (1149)
Q Consensus 3 ~~fv~LHvHS~ySlldg~~---~ieeL-------------------------V~~Ake~G~~AlAITDH~nl~--G~~~f 52 (1149)
|.||+.|+|...|++-|.. ++.+. +..+-+.|..+++ |+...+ .....
T Consensus 65 PGlVn~H~Hl~~~~~rg~~~~~~l~~wl~~~~~~~e~~~~~~~~~~~~a~~~~~e~l~~GvTtv~--d~~~~~~~~~~~~ 142 (429)
T cd01303 65 PGFIDTHIHAPQYANIGSGLGEPLLDWLETYTFPEEAKFADPAYAREVYGRFLDELLRNGTTTAC--YFATIHPESTEAL 142 (429)
T ss_pred cceeeeeecccccccccccCCCcHHHHHHhhhhHHHHhcCCHHHHHHHHHHHHHHHHhCCceEEE--eecccChhHHHHH
Confidence 5699999999877654431 11111 1234556777776 765433 34456
Q ss_pred HHHHHhCCCeeEeeeee
Q psy9396 53 YKSAYNKGIKPIIGCDV 69 (1149)
Q Consensus 53 ~~~ak~~GIKpIiG~Ei 69 (1149)
.+++++.|++.++|-+.
T Consensus 143 ~~a~~~~G~R~~~~~~~ 159 (429)
T cd01303 143 FEEAAKRGQRAIAGKVC 159 (429)
T ss_pred HHHHHHhCCeEEEeeee
Confidence 67788889998887554
No 243
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=20.60 E-value=4.5e+02 Score=27.27 Aligned_cols=59 Identities=14% Similarity=0.338 Sum_probs=39.4
Q ss_pred CCceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEE
Q psy9396 984 TYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVL 1047 (1149)
Q Consensus 984 ~~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~ 1047 (1149)
++.+++.|+|..--..+. .|.-.-+++.|....+.|+ |... .-+.+++|.-|+++|+.+
T Consensus 51 g~~vrvgG~V~~gSi~~~-~~~~~~F~ltD~~~~i~V~-Y~G~---lPd~F~eg~~VVv~G~~~ 109 (148)
T PRK13254 51 GRRFRLGGLVEKGSVQRG-DGLTVRFVVTDGNATVPVV-YTGI---LPDLFREGQGVVAEGRLQ 109 (148)
T ss_pred CCeEEEeEEEecCcEEeC-CCCEEEEEEEeCCeEEEEE-ECCC---CCccccCCCEEEEEEEEC
Confidence 358999999974322222 4444556788988888764 3322 234567899999999996
No 244
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=20.53 E-value=1.4e+02 Score=33.71 Aligned_cols=41 Identities=22% Similarity=0.211 Sum_probs=18.3
Q ss_pred HHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhCCCeeE
Q psy9396 23 INDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64 (1149)
Q Consensus 23 ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~GIKpI 64 (1149)
+++.++.|++.|.+++-|-|-- +--..+|.+.|+++||.+|
T Consensus 104 ~e~F~~~~~~aGvdGlIipDLP-~ee~~~~~~~~~~~gl~~I 144 (259)
T PF00290_consen 104 IERFFKEAKEAGVDGLIIPDLP-PEESEELREAAKKHGLDLI 144 (259)
T ss_dssp HHHHHHHHHHHTEEEEEETTSB-GGGHHHHHHHHHHTT-EEE
T ss_pred hHHHHHHHHHcCCCEEEEcCCC-hHHHHHHHHHHHHcCCeEE
Confidence 3445555555555555555532 1222344445555554443
No 245
>PF06743 FAST_1: FAST kinase-like protein, subdomain 1; InterPro: IPR010622 This entry represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins.; GO: 0004672 protein kinase activity
Probab=20.36 E-value=1.3e+02 Score=26.87 Aligned_cols=56 Identities=11% Similarity=0.134 Sum_probs=40.6
Q ss_pred HcCCCHHHHHHHHHHHHHhcccCCChhhHHHHHHHHHHHHHHhhcChHHHHHHhccc
Q psy9396 727 KYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSL 783 (1149)
Q Consensus 727 ~~g~~~~~a~~i~~~i~~fa~YgFnksHa~aYa~~ay~~AylK~~yP~~f~~a~l~~ 783 (1149)
.-||.+..++++|+.+...-.--|..-.+...--+.|-.+.|. +||.++...+++.
T Consensus 10 ~LNy~P~~~~~f~~~~~~~L~~~l~~~~p~~ll~~v~Sl~~l~-~~p~~~l~~vf~~ 65 (71)
T PF06743_consen 10 RLNYQPPNAEEFFEKLIERLESYLDEFSPEDLLDLVWSLCLLQ-RFPEDLLNKVFSP 65 (71)
T ss_pred hcCCCCCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHh-hCCHHHHHHHcCH
Confidence 4568888889999887765444344444555566777788887 8999999999875
No 246
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=20.28 E-value=1.6e+02 Score=34.93 Aligned_cols=64 Identities=13% Similarity=0.074 Sum_probs=42.2
Q ss_pred CccccccccccCchhh---ccccHHHHHHHHHHcCCCEEEEecCCchhh-------HHHHHHHHHhCCCeeEeeee
Q psy9396 3 PQFIHLRLHSEYSIID---GLLRINDVIEAAANDYQPALAITDLSNLFG-------IIKFYKSAYNKGIKPIIGCD 68 (1149)
Q Consensus 3 ~~fv~LHvHS~ySlld---g~~~ieeLV~~Ake~G~~AlAITDH~nl~G-------~~~f~~~ak~~GIKpIiG~E 68 (1149)
|.|++.|+|......+ +..+++...+.|...|..++. |..+..| ..+..+.+.+.||+.+.+..
T Consensus 56 PG~id~H~H~~~~~~~~~~~~~t~~~~~~~~~~~GvTTvv--d~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~ 129 (388)
T PRK10657 56 PGFIDQHVHIIGGGGEGGFSTRTPEVQLSDLTEAGITTVV--GLLGTDGITRSMESLLAKARALEEEGISAYMYTG 129 (388)
T ss_pred ccceeeeeCcccCCCCcccccCCHHHHHHHHHhCCceEEE--CCCCCCCCCCCHHHHHHHHHHHHhhCCEEEEEec
Confidence 5799999998632112 335788889999999998887 6442112 23334555678999885533
No 247
>PTZ00129 40S ribosomal protein S14; Provisional
Probab=20.23 E-value=76 Score=32.75 Aligned_cols=45 Identities=24% Similarity=0.459 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHhCCCc-----c-----------cCCCcchhHHHHHHHh---cCCccCCCCCC
Q psy9396 343 FLIVSDFIQWAKNNSIP-----V-----------GPGRGSGASSLVAYSL---SITDIDPLSYN 387 (1149)
Q Consensus 343 FLiv~D~v~~ak~~gi~-----v-----------GpGRGSaagSlVaY~L---gIT~vDPl~~~ 387 (1149)
++...++.+.|++.||. | ||||=||==.|...=| .|+||-||.||
T Consensus 75 q~aa~~~a~k~~~~Gi~~v~V~vr~~gg~~~kg~GpGr~~airaL~~~glkI~~I~DvTPiPhN 138 (149)
T PTZ00129 75 MMAAQDVAARCKELGINALHIKLRATGGVRTKTPGPGAQAALRALARAGLKIGRIEDVTPIPTD 138 (149)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEecCCCCCC
Confidence 45678888888888753 5 7777777777777644 46799999987
No 248
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=20.06 E-value=2.6e+02 Score=28.25 Aligned_cols=43 Identities=12% Similarity=0.099 Sum_probs=33.4
Q ss_pred hccccHHHHHHHHHHcCCCEEEEecCC--chhhHHHHHHHHHhCC
Q psy9396 18 DGLLRINDVIEAAANDYQPALAITDLS--NLFGIIKFYKSAYNKG 60 (1149)
Q Consensus 18 dg~~~ieeLV~~Ake~G~~AlAITDH~--nl~G~~~f~~~ak~~G 60 (1149)
-.-.++++.++.|++.+-+.++|+=.. .+..+.+..++.++.|
T Consensus 37 g~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g 81 (132)
T TIGR00640 37 PLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLG 81 (132)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcC
Confidence 345789999999999999999997654 3555667777777765
No 249
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B.
Probab=20.06 E-value=1.1e+02 Score=26.83 Aligned_cols=42 Identities=21% Similarity=0.287 Sum_probs=26.1
Q ss_pred ccCCccHHHHHHHHHHHhcCCCCCHHHHHhhcccCCCCHHHHHHHHHcCCCCCcchhHH
Q psy9396 837 AIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRY 895 (1149)
Q Consensus 837 ~Ikgvg~~~~~~i~~~r~~g~f~~~~df~~r~~~~~~~~~~le~Li~~Gafd~~~~~R~ 895 (1149)
.|+|||+.+++.|.+ .|.|++.+... ..|.|. ..+.+|+..+
T Consensus 7 GI~~VG~~~ak~L~~-----~f~sl~~l~~a---------~~e~L~---~i~gIG~~~A 48 (64)
T PF12826_consen 7 GIPGVGEKTAKLLAK-----HFGSLEALMNA---------SVEELS---AIPGIGPKIA 48 (64)
T ss_dssp TSTT--HHHHHHHHH-----CCSCHHHHCC-----------HHHHC---TSTT--HHHH
T ss_pred CCCCccHHHHHHHHH-----HcCCHHHHHHc---------CHHHHh---ccCCcCHHHH
Confidence 599999999998874 59999887544 345553 5677886443
Done!