Query psy9396
Match_columns 1149
No_of_seqs 313 out of 2342
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 18:05:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9396.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9396hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hpi_A DNA polymerase III alph 100.0 3E-283 1E-287 2649.1 102.6 1104 3-1138 5-1191(1220)
2 2hnh_A DNA polymerase III alph 100.0 3E-249 9E-254 2315.2 89.6 894 1-907 1-908 (910)
3 3f2b_A DNA-directed DNA polyme 100.0 3E-195 1E-199 1817.2 55.6 789 3-897 114-1027(1041)
4 2yb1_A Amidohydrolase; HET: AM 99.8 5.6E-18 1.9E-22 190.5 18.3 188 4-207 2-253 (292)
5 3o0f_A Putative metal-dependen 99.7 8.8E-16 3E-20 172.1 17.6 188 4-206 13-265 (301)
6 3e38_A Two-domain protein cont 99.6 3.6E-15 1.2E-19 170.3 12.7 186 3-226 18-236 (343)
7 2yxo_A Histidinol phosphatase; 99.5 1.5E-13 5.1E-18 151.7 11.8 201 5-218 1-240 (267)
8 2w9m_A Polymerase X; SAXS, DNA 99.4 3.1E-13 1.1E-17 165.3 11.3 180 4-211 327-525 (578)
9 3b0x_A DNA polymerase beta fam 99.4 6.2E-13 2.1E-17 162.6 13.2 188 3-218 336-544 (575)
10 1m65_A Hypothetical protein YC 99.4 1E-13 3.5E-18 151.2 3.9 184 4-207 2-197 (245)
11 2anu_A Hypothetical protein TM 99.3 6.5E-12 2.2E-16 138.3 14.3 181 4-225 20-237 (255)
12 3dcp_A Histidinol-phosphatase; 98.6 2.4E-07 8.3E-12 103.3 13.5 70 4-74 1-99 (283)
13 3qy7_A Tyrosine-protein phosph 98.6 1.3E-07 4.3E-12 104.4 11.0 186 5-220 1-212 (262)
14 2wje_A CPS4B, tyrosine-protein 98.5 3.3E-07 1.1E-11 100.2 10.5 174 4-208 4-209 (247)
15 2k50_A Replication factor A re 98.2 5.6E-06 1.9E-10 79.7 10.2 91 975-1066 7-103 (115)
16 1v77_A PH1877P, hypothetical p 98.1 4.7E-06 1.6E-10 89.0 9.4 151 5-207 9-173 (212)
17 2edu_A Kinesin-like protein KI 97.8 5.8E-06 2E-10 77.4 1.3 56 834-892 41-97 (98)
18 2k75_A Uncharacterized protein 97.4 0.00076 2.6E-08 63.9 10.4 83 976-1067 4-92 (106)
19 1o7i_A SSB, SSO2364, single st 97.4 0.0011 3.6E-08 64.2 11.3 84 976-1065 3-93 (119)
20 3dm3_A Replication factor A; p 97.0 0.0029 1E-07 59.7 9.9 87 976-1066 6-98 (105)
21 1ynx_A Replication factor-A pr 96.9 0.0035 1.2E-07 60.0 10.0 70 975-1044 4-79 (114)
22 3e0e_A Replication protein A; 96.9 0.003 1E-07 58.7 8.8 85 976-1065 3-93 (97)
23 2i5h_A Hypothetical protein AF 96.7 0.00094 3.2E-08 69.1 4.2 48 834-881 133-185 (205)
24 4gop_B Putative uncharacterize 96.6 0.0047 1.6E-07 61.1 8.7 77 986-1068 38-117 (136)
25 2kbn_A Conserved protein; nucl 96.6 0.0082 2.8E-07 57.0 10.0 84 976-1066 6-92 (109)
26 3kdf_D Replication protein A 3 96.4 0.0078 2.7E-07 59.1 8.7 77 986-1068 33-112 (132)
27 3kf6_A Protein STN1; OB fold, 96.4 0.011 3.7E-07 59.9 9.5 76 986-1067 49-128 (159)
28 2pi2_A Replication protein A 3 95.5 0.023 7.7E-07 62.7 7.9 75 986-1066 73-150 (270)
29 1x54_A Asparaginyl-tRNA synthe 95.2 0.1 3.5E-06 61.3 12.5 78 984-1066 16-99 (434)
30 1wyd_A Hypothetical aspartyl-t 95.1 0.088 3E-06 61.7 11.6 79 984-1067 16-97 (429)
31 3nem_A Aspartyl-tRNA synthetas 94.9 0.096 3.3E-06 61.6 11.2 87 976-1067 5-100 (438)
32 4ex5_A Lysine--tRNA ligase; st 94.7 0.13 4.4E-06 61.7 11.7 77 985-1067 87-168 (529)
33 3koj_A Uncharacterized protein 94.6 0.3 1E-05 46.2 11.8 79 986-1064 13-108 (108)
34 3bju_A Lysyl-tRNA synthetase; 94.6 0.2 6.9E-06 60.1 13.3 78 985-1067 56-140 (521)
35 1jmc_A Protein (replication pr 94.6 0.11 3.8E-06 56.1 10.1 70 975-1044 8-83 (246)
36 3a74_A Lysyl-tRNA synthetase; 94.4 0.16 5.5E-06 60.6 11.7 77 985-1067 57-138 (493)
37 1l0w_A Aspartyl-tRNA synthetas 94.4 0.14 4.9E-06 62.2 11.3 78 984-1066 16-101 (580)
38 3i7f_A Aspartyl-tRNA synthetas 94.3 0.2 6.9E-06 60.2 12.3 86 976-1065 51-150 (548)
39 2vw9_A Single-stranded DNA bin 93.9 0.23 7.9E-06 48.7 9.8 81 986-1066 4-106 (134)
40 1c0a_A Aspartyl tRNA synthetas 93.8 0.24 8.2E-06 60.3 11.8 78 984-1066 15-103 (585)
41 3vdy_A SSB, single-stranded DN 93.7 0.35 1.2E-05 46.1 10.4 82 986-1067 7-108 (116)
42 1e1o_A Lysyl-tRNA synthetase, 93.7 0.21 7.2E-06 59.7 10.8 78 985-1067 65-147 (504)
43 1txy_A Primosomal replication 93.4 0.32 1.1E-05 45.5 9.4 81 986-1066 4-101 (104)
44 1n9w_A Aspartyl-tRNA synthetas 93.3 0.26 8.7E-06 57.7 10.5 73 984-1067 13-87 (422)
45 3arc_U Photosystem II 12 kDa e 93.3 0.054 1.9E-06 50.2 3.8 44 834-883 27-70 (97)
46 3fhw_A Primosomal replication 93.1 0.53 1.8E-05 45.0 10.4 80 986-1066 3-97 (115)
47 1z9f_A Single-strand binding p 93.0 0.44 1.5E-05 47.9 10.2 83 985-1067 17-121 (153)
48 1s5l_U Photosystem II 12 kDa e 92.8 0.094 3.2E-06 51.0 4.7 43 834-882 64-106 (134)
49 3eiv_A Single-stranded DNA-bin 92.8 0.59 2E-05 48.9 11.1 79 986-1064 6-108 (199)
50 3f2b_A DNA-directed DNA polyme 92.5 0.52 1.8E-05 60.5 12.3 91 976-1066 8-102 (1041)
51 1wjj_A Hypothetical protein F2 92.4 0.89 3.1E-05 45.2 11.4 86 975-1065 16-117 (145)
52 3tqy_A Single-stranded DNA-bin 92.4 0.49 1.7E-05 47.8 9.6 81 986-1066 10-113 (158)
53 1qvc_A Single stranded DNA bin 92.2 0.51 1.8E-05 46.9 9.4 66 986-1051 7-88 (145)
54 3ulp_A Single-strand binding p 92.1 0.74 2.5E-05 44.4 10.2 66 986-1051 8-90 (124)
55 1eov_A ASPRS, aspartyl-tRNA sy 91.9 0.67 2.3E-05 55.2 11.6 77 985-1065 37-127 (487)
56 3k8a_A Putative primosomal rep 91.8 0.87 3E-05 42.6 9.9 78 986-1065 9-101 (103)
57 2xgt_A Asparaginyl-tRNA synthe 91.7 0.57 1.9E-05 55.0 10.6 77 985-1066 12-95 (435)
58 3kf8_A Protein STN1; OB fold; 91.7 0.72 2.5E-05 48.7 10.1 78 986-1065 87-182 (220)
59 3afp_A Single-stranded DNA-bin 91.6 0.85 2.9E-05 46.5 10.5 66 986-1051 6-88 (168)
60 3m4p_A Ehasnrs, asparaginyl-tR 91.2 0.38 1.3E-05 56.8 8.4 87 976-1066 20-120 (456)
61 4dam_A Single-stranded DNA-bin 91.0 1 3.5E-05 43.8 9.9 77 986-1062 17-115 (128)
62 4gop_C Putative uncharacterize 90.7 0.38 1.3E-05 56.6 7.9 69 976-1044 4-78 (444)
63 3ull_A DNA binding protein; DN 90.7 0.98 3.3E-05 44.1 9.5 82 986-1067 16-126 (132)
64 1v1q_A Primosomal replication 90.4 1 3.4E-05 44.2 9.2 81 986-1066 21-118 (134)
65 3pgz_A Single-stranded DNA-bin 90.4 1.2 4.1E-05 46.3 10.3 77 986-1062 28-128 (193)
66 3au7_A TIAS, putative uncharac 90.1 1.2 4.2E-05 51.2 11.0 81 978-1066 278-360 (402)
67 1se8_A Single-strand binding p 89.3 1.2 4E-05 49.7 9.9 80 986-1066 131-232 (301)
68 3k7u_C MP18 RNA editing comple 89.3 2 6.7E-05 42.9 10.5 65 986-1051 8-88 (148)
69 2fxq_A Single-strand binding p 88.4 1.1 3.8E-05 49.0 8.8 80 986-1066 130-228 (264)
70 3lgj_A Single-stranded DNA-bin 88.2 1.8 6.1E-05 44.1 9.5 66 986-1051 25-107 (169)
71 2duy_A Competence protein come 88.0 0.33 1.1E-05 42.5 3.4 42 834-881 28-69 (75)
72 4gs3_A Single-stranded DNA-bin 87.9 1.1 3.7E-05 42.3 7.0 80 984-1065 11-105 (107)
73 1se8_A Single-strand binding p 87.7 1.5 5E-05 49.0 9.3 81 986-1066 7-110 (301)
74 1eqq_A Single stranded DNA bin 87.3 0.44 1.5E-05 49.1 4.4 65 986-1050 8-88 (178)
75 3en2_A Probable primosomal rep 85.5 3.5 0.00012 38.4 9.1 66 986-1052 4-83 (101)
76 1xjv_A Protection of telomeres 85.5 1.9 6.4E-05 47.9 8.7 88 973-1061 4-94 (294)
77 2fxq_A Single-strand binding p 83.5 2.9 0.0001 45.6 9.0 81 986-1066 7-108 (264)
78 1gm5_A RECG; helicase, replica 81.4 0.94 3.2E-05 57.1 4.6 71 976-1048 157-229 (780)
79 4ah6_A Aspartate--tRNA ligase, 81.0 2.5 8.7E-05 51.5 7.9 75 984-1066 24-111 (617)
80 1qzg_A Protection of telomeres 75.6 5.7 0.0002 40.9 7.5 79 983-1062 41-128 (187)
81 4dni_A Fusion protein of RNA-e 74.8 10 0.00035 41.1 9.6 64 986-1050 148-227 (257)
82 1jmc_A Protein (replication pr 73.9 17 0.00058 38.7 11.2 103 976-1095 127-241 (246)
83 3stb_C RNA-editing complex pro 73.7 18 0.0006 35.9 10.1 64 986-1050 46-121 (148)
84 3bzc_A TEX; helix-turn-helix, 73.7 1.9 6.5E-05 54.0 4.0 46 834-882 509-555 (785)
85 4dni_A Fusion protein of RNA-e 71.3 16 0.00053 39.7 10.0 80 986-1065 32-127 (257)
86 3ebe_A Protein MCM10 homolog; 71.0 14 0.00047 38.6 9.1 56 986-1042 57-117 (200)
87 2y1h_A Putative deoxyribonucle 69.7 6.3 0.00021 42.4 6.6 60 1-63 2-61 (272)
88 1zzm_A Putative deoxyribonucle 68.1 7.7 0.00026 41.3 6.9 57 1-60 1-57 (259)
89 3k81_C MP18 RNA editing comple 66.3 15 0.0005 37.1 7.9 65 986-1051 24-104 (164)
90 4gop_C Putative uncharacterize 65.1 10 0.00035 44.4 7.6 77 976-1053 122-211 (444)
91 3psf_A Transcription elongatio 63.5 5.2 0.00018 51.6 5.0 51 834-889 718-770 (1030)
92 3ipw_A Hydrolase TATD family p 59.2 9.6 0.00033 42.8 5.6 58 1-59 24-89 (325)
93 3psi_A Transcription elongatio 58.7 7.1 0.00024 51.2 5.0 51 834-889 715-767 (1219)
94 3rcm_A TATD family hydrolase; 55.9 11 0.00039 41.4 5.5 53 4-59 2-54 (287)
95 1jb7_A Telomere-binding protei 55.3 16 0.00056 43.3 7.0 89 972-1062 35-141 (495)
96 3or1_C Sulfite reductase GAMA; 53.1 8.5 0.00029 36.0 3.2 47 410-470 43-89 (105)
97 1xwy_A DNAse TATD, deoxyribonu 52.6 21 0.00073 37.9 6.9 57 1-60 1-57 (264)
98 2xio_A Putative deoxyribonucle 47.3 17 0.00059 39.9 5.2 56 4-60 2-65 (301)
99 3e2v_A 3'-5'-exonuclease; stru 46.8 20 0.00067 41.4 5.7 56 3-59 12-75 (401)
100 3gg7_A Uncharacterized metallo 42.6 13 0.00045 40.1 3.2 49 4-59 2-50 (254)
101 1nnx_A Protein YGIW; structura 39.5 33 0.0011 32.2 5.0 70 984-1064 37-106 (109)
102 2bcq_A DNA polymerase lambda; 39.0 19 0.00067 40.5 4.0 31 835-865 59-89 (335)
103 3mxn_B RECQ-mediated genome in 37.7 42 0.0014 33.0 5.5 71 986-1067 60-130 (150)
104 2a1j_A DNA repair endonuclease 37.2 36 0.0012 28.5 4.4 36 835-881 6-41 (63)
105 1ji8_A Dissimilatory siroheme- 34.4 14 0.00046 34.9 1.4 60 411-513 50-109 (111)
106 2gzx_A Putative TATD related D 33.6 67 0.0023 33.8 7.0 54 4-60 1-54 (265)
107 2ihm_A POL MU, DNA polymerase 33.5 33 0.0011 39.0 4.7 32 835-866 63-94 (360)
108 2kng_A Protein LSR2; DNA-bindi 32.8 24 0.00083 28.9 2.4 25 347-372 16-40 (55)
109 2vqe_K 30S ribosomal protein S 32.4 17 0.00058 35.2 1.8 45 343-387 62-117 (129)
110 1z00_B DNA repair endonuclease 31.4 49 0.0017 29.5 4.5 30 833-867 18-47 (84)
111 3ci0_K Pseudopilin GSPK; gener 30.8 16 0.00055 40.4 1.6 34 835-868 201-236 (298)
112 4dzh_A Amidohydrolase; adenosi 29.9 44 0.0015 38.8 5.2 64 3-70 73-164 (472)
113 1yix_A Deoxyribonuclease YCFH; 29.1 44 0.0015 35.2 4.7 56 4-60 2-58 (265)
114 3vup_A Beta-1,4-mannanase; TIM 28.8 63 0.0022 34.6 6.0 47 21-67 42-110 (351)
115 3u5c_S 40S ribosomal protein S 28.3 40 0.0014 33.3 3.7 48 827-883 24-71 (146)
116 3e0j_A DNA polymerase subunit 28.1 1.7E+02 0.0059 34.3 9.7 95 947-1048 51-174 (476)
117 1z00_A DNA excision repair pro 28.1 70 0.0024 28.3 5.1 32 831-867 17-48 (89)
118 3r8n_M 30S ribosomal protein S 27.9 1E+02 0.0035 29.1 6.2 71 827-906 10-81 (114)
119 3h4u_A Amidohydrolase; signatu 27.9 42 0.0014 38.8 4.6 67 3-69 87-183 (479)
120 1sr3_A APO-CCME; OB fold, beta 27.5 1.4E+02 0.0049 29.0 7.4 69 985-1062 29-97 (136)
121 4dyk_A Amidohydrolase; adenosi 27.2 44 0.0015 38.2 4.5 64 3-70 66-157 (451)
122 2q02_A Putative cytoplasmic pr 26.4 1.1E+02 0.0037 32.1 7.2 45 20-64 18-68 (272)
123 2xzm_K RPS14E; ribosome, trans 26.1 17 0.00057 36.2 0.5 45 343-387 75-138 (151)
124 4gxw_A Adenosine deaminase; am 25.5 32 0.0011 39.4 2.8 27 5-36 31-57 (380)
125 1x2i_A HEF helicase/nuclease; 25.1 77 0.0026 26.6 4.6 31 832-867 13-43 (75)
126 3iar_A Adenosine deaminase; pu 24.3 35 0.0012 38.8 2.9 28 4-36 7-34 (367)
127 3lnp_A Amidohydrolase family p 24.3 59 0.002 37.4 4.9 64 3-70 86-177 (468)
128 2kct_A Cytochrome C-type bioge 24.0 1.6E+02 0.0055 26.8 6.6 61 984-1048 8-71 (94)
129 3rys_A Adenosine deaminase 1; 23.9 39 0.0013 38.0 3.1 28 4-36 14-41 (343)
130 3ret_A Salicylate biosynthesis 23.7 3.4E+02 0.012 24.5 9.0 67 684-771 31-97 (101)
131 4h41_A Putative alpha-L-fucosi 23.0 85 0.0029 35.3 5.6 49 21-69 54-122 (340)
132 3lmz_A Putative sugar isomeras 22.9 1.3E+02 0.0043 31.6 6.8 44 21-64 30-78 (257)
133 1l1o_C Replication protein A 7 22.8 1.8E+02 0.006 29.5 7.5 63 1006-1068 80-165 (181)
134 2fmp_A DNA polymerase beta; nu 22.8 56 0.0019 36.7 4.1 33 835-867 59-91 (335)
135 3rmi_A Chorismate mutase prote 22.6 2.1E+02 0.0071 26.8 7.4 49 709-771 54-102 (114)
136 3pao_A Adenosine deaminase; st 22.6 44 0.0015 37.4 3.1 28 4-36 11-38 (326)
137 4f0r_A 5-methylthioadenosine/S 22.5 68 0.0023 36.6 4.9 64 3-70 64-155 (447)
138 2vc7_A Aryldialkylphosphatase; 22.3 1.1E+02 0.0038 33.1 6.4 67 4-70 17-97 (314)
139 3d3a_A Beta-galactosidase; pro 22.2 1.1E+02 0.0036 37.4 6.6 49 20-68 36-97 (612)
140 1fob_A Beta-1,4-galactanase; B 22.1 65 0.0022 36.0 4.4 47 23-69 29-82 (334)
141 3jr2_A Hexulose-6-phosphate sy 22.0 92 0.0032 32.3 5.4 45 23-67 72-119 (218)
142 3cqj_A L-ribulose-5-phosphate 21.8 1.1E+02 0.0037 32.8 6.1 46 19-64 28-83 (295)
143 2yxb_A Coenzyme B12-dependent 21.5 1.5E+02 0.0051 29.4 6.6 50 17-66 52-106 (161)
144 3kws_A Putative sugar isomeras 20.8 1.3E+02 0.0044 32.0 6.4 44 21-64 38-81 (287)
145 2a1j_B DNA excision repair pro 20.5 72 0.0025 28.4 3.6 32 830-866 29-60 (91)
No 1
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=100.00 E-value=3.1e-283 Score=2649.14 Aligned_cols=1104 Identities=38% Similarity=0.603 Sum_probs=1001.9
Q ss_pred CccccccccccCchhhccccHHHHHHHHHH--cCCCEEEEecCCchhhHHHHHHHHHhCCCeeEeeeeeeecccccC---
Q psy9396 3 PQFIHLRLHSEYSIIDGLLRINDVIEAAAN--DYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIEN--- 77 (1149)
Q Consensus 3 ~~fv~LHvHS~ySlldg~~~ieeLV~~Ake--~G~~AlAITDH~nl~G~~~f~~~ak~~GIKpIiG~Ei~v~~~~~~--- 77 (1149)
++|+|||+||.||+|||+++|++||++|++ +||++|||||||+|+|+++|+++|++.|||||+|||+++.++...
T Consensus 5 ~~fvdLH~HT~~SlLDG~~~~~elv~~A~~~~~G~~alAITDH~~~~G~~~f~~~a~~~gIk~I~G~E~~~~~~~~~d~~ 84 (1220)
T 2hpi_A 5 LKFAHLHQHTQFSLLDGAAKLQDLLKWVKETTPEDPALAMTDHGNLFGAVEFYKKATAMGVKPIIGYEAYVAAESRFDRK 84 (1220)
T ss_dssp CCCCCCSBCCTTSTTTCCCCHHHHHHHHHHHCCSSCEEEEEEETCCTTHHHHHHHHHTTTCEEEEEEEEEEESSCTTCCC
T ss_pred CcEeEcccccCCCcccccCCHHHHHHHHHhccCCCCEEEEEecCcchhHHHHHHHHHHcCCeEEEEEEEEEecccccccc
Confidence 369999999999999999999999999999 999999999999999999999999999999999999999864211
Q ss_pred -----CC-CccEEEEEcccHHHHHHHHHHHHHHHhhccCCcccccHHHHhccccCCCeEEEeCCCcchHHHHHhcCChHH
Q psy9396 78 -----KK-PSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDI 151 (1149)
Q Consensus 78 -----~~-~~hlllLAkN~~Gy~nL~kL~S~~~~~~~~~~~p~i~~e~L~~~~~~~glIiis~~~~g~i~~~l~~~~~~~ 151 (1149)
+. .+|+++||+|++||+|||+|+|.++++++++ .|++++++|.+ |++|+|++++|..|++.+++++++.+.
T Consensus 85 ~~~~~d~~~~hLvlLAkN~~GY~NL~kLiS~a~~~g~~~-~Pri~~e~L~~--~~eGlI~lsg~~~Gev~~~l~~g~~e~ 161 (1220)
T 2hpi_A 85 RGKGLDGGYFHLTLLAKDFTGYQNLVRLASRAYLEGFYE-KPRIDREILRE--HAQGLIALSGCLGAEIPQFILQDRLDL 161 (1220)
T ss_dssp CC-----CEEEEEEEECSHHHHHHHHHHHHHHHHTCBSS-SBEECHHHHHH--TCTTEEEECCSTTBHHHHHHHTTCHHH
T ss_pred ccccccCccceEEEEEcCHHHHHHHHHHHHHHHHhcccC-CCCCCHHHHHh--hcCCcEEEECCccchHHHHHhcCCHHH
Confidence 11 3799999999999999999999999988754 69999999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCeEEEEccCCCcchHHHHHHHHHHHHhcCCCEEEecCccccCccCchHHHHHHHHHcCCccccccc
Q psy9396 152 AENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKR 231 (1149)
Q Consensus 152 a~~~~~~~~~~f~~~~ylEi~~~~~~~~~~~n~~l~~lA~~~~iplVatnDvhyl~~eD~~~~~vL~aI~~g~~l~~~~~ 231 (1149)
|.+++.+|.++||+++|+|+|+|+.+.+...|..++++|+++|+|+||||||||++++|+.+|++|.||++|+++++++|
T Consensus 162 a~~~a~~~~~~Fg~~~yLEIq~~g~~~~~~~n~~l~~LA~e~glPlVATnDvHy~~~eD~~~~dvl~~i~~g~~l~d~~r 241 (1220)
T 2hpi_A 162 AEARLNEDLSIFGDRFFIEIQNHGLPEQKKVNQVLKEFARKYGLGMVATNDGHYVRKEDARAHEVLLAIQSKTTLDDPER 241 (1220)
T ss_dssp HHHHHHHHHHHHGGGEEEEECCSSCHHHHHHHHHHHHHHHHTTCCEEECCCBSBSSGGGHHHHHHHHHHHTTCCSSCSSC
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCCCchHHHHHHHHHHHHHHcCCCEEeecCcccccccchHHHHHHHHHhcCCccCcccc
Confidence 99999999999999999999999999889999999999999999999999999999999999999999999999999998
Q ss_pred cccCCcCCCCCCHHHHHHHhcC---hHHHHHHHHHHHHhccccccccCCC---CCCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy9396 232 IKKFTKEQNFKTQSEMIKLFYD---IPSAIQNTIEIAKRCNLKLEFGKPK---LPKFPTPKNININDFLISKSKHGLKKR 305 (1149)
Q Consensus 232 ~~~~~~~~~~~s~~em~~~f~~---~~~a~~nt~~ia~~c~~~~~~~~~~---lP~~~~p~~~~~~~~l~~l~~~gl~~r 305 (1149)
.+..++++||||++||.++|++ +|+|++||++||++|++++++.++. +|+|+.|+|.++++||+++|++|+++|
T Consensus 242 ~~~~~~~~ylks~~EM~~~f~~~~~~peal~NT~~IA~~c~~~~~~~~~~~~~lP~f~~P~g~~~~~~L~~l~~~Gl~~R 321 (1220)
T 2hpi_A 242 WRFPCDEFYVKTPEEMRAMLPEAEWGDEPFDNTVEIARMCDVDLPIGDKMVYRIPRFPLPEGRTEAQYLRELTFLGLLRR 321 (1220)
T ss_dssp CCCSSSCCBCCCHHHHHHHSCHHHHCSHHHHHHHHHHHTCCCCCCCTTSCCCBCCCCCC--CCCHHHHHHHHHHHHHHHH
T ss_pred ccCCCcccccCCHHHHHHhcccccCCHHHHHHHHHHHHhCEEEeccCCcccccCCCCCCCCCCCHHHHHHHHHHHHHHHh
Confidence 7777778899999999999999 8999999999999999999988887 999999999999999999999999999
Q ss_pred HhhhCCChh--------------------------------------------hhhhhhHHHHHHHHHHHHHHHhcCCch
Q psy9396 306 LLNLYKDPE--------------------------------------------IYKCEKLRYKKRLQFEIETIIKMNFSG 341 (1149)
Q Consensus 306 ~~~~~~~~~--------------------------------------------~~~~~~~~~~~Rl~~EL~vI~~~gf~~ 341 (1149)
|....|... ......++|++||+|||+||++|||++
T Consensus 322 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rle~EL~vI~~mgf~~ 401 (1220)
T 2hpi_A 322 YPDRITEAFYREVLRLLGTMPPHGDERALAEALARVEEKAWEELRKRLPPLEGVREWTAEAILHRALYELSVIERMGFPG 401 (1220)
T ss_dssp CTTTSCHHHHHHHHTTC-------CHHHHHHHHHHCCHHHHTTTTTC--------CCCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred CCccCChHHhhHHHhhhccccccchhhHHHhhhcccchhhhhhhhcccchhhcccccccHHHHHHHHHHHHHHHhcCCCc
Confidence 963222100 000123479999999999999999999
Q ss_pred hhHHHHHHHHHHHhCCCcccCCCcchhHHHHHHHhcCCccCCCCCCCcceeccCCCCCCCCCceeecCCCchHhHHHHHH
Q psy9396 342 YFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVK 421 (1149)
Q Consensus 342 YFLiv~D~v~~ak~~gi~vGpGRGSaagSlVaY~LgIT~vDPl~~~LlFERFLnpeR~smPDIDiDf~~~~R~~vi~yv~ 421 (1149)
|||||||||+|||++||+||||||||||||||||||||+||||+|||||||||||||+||||||||||++||++||+||+
T Consensus 402 YFLIV~D~I~~Ak~~gI~VGpGRGSaAgSlVaY~LgIT~vDPl~~~LlFERFLnpeR~smPDIDiDF~~~rR~eVi~Yv~ 481 (1220)
T 2hpi_A 402 YFLIVQDYINWARGHGVSVGPGRGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRERDRVIQYVR 481 (1220)
T ss_dssp HHHHHHHHHHHHHTTTCCBCSCCGGGGGCHHHHHTTSCCSCTTTTTCCHHHHSCTTSCCCCCCEEEEETTTHHHHHHHHH
T ss_pred EEeHHHHHHHHHHHCCCcccCCCChHHHHHHHHHhCCCCcCccccCCChhhcCCccccCCCCCceecccccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCcccEEEEEecccchhhhHHHHHHHhcCCCHHHHHHHHccCCCCCCCCc--chHHHhhhChHHHHHhhccHHHHHHH
Q psy9396 422 DRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLI--TLSNAIKEEPQLAERIKNEEEVRQLI 499 (1149)
Q Consensus 422 ~kYG~~~Va~I~Tf~t~~ak~airdv~r~lg~~~~~~~~i~k~ip~~~~~~~--~l~~a~~~~~~l~~~~~~~~~~~~l~ 499 (1149)
+|||++|||||+|||||++|+||||||||||+|+.++|+|||+||..++ + ||++|++.+|+|++++++++.+++++
T Consensus 482 ~kYG~d~Vaqi~TfgT~~ak~AiRDvgRvlg~p~~~vd~iaK~ip~~~~--~~~tl~~a~~~~~~l~~~~~~~~~~~~l~ 559 (1220)
T 2hpi_A 482 ERYGEDKVAQIGTFGSLASKAALKDVARVYGIPHKKAEELAKLIPVQFG--KPKPLQEAIQVVPELRAEMEKDERIRQVI 559 (1220)
T ss_dssp HHHCTTTEEEEEEEEECCHHHHHHHHHHHTTCCHHHHHHHHTTSCBSSS--SBCCTTTC-----CCTTHHHHCHHHHHHH
T ss_pred HHhCcccEEEEEeccchhHHHHHHHHHHHhCCCHHHHHHHHhcCCCccc--ccccHHHHHhhCHHHHhhhhcCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999887 6 99999999999999999999999999
Q ss_pred HHHHHcccccCCccccccEEEEcCCCCCccccceeeCCCCceEeeccccchhhcCCcceeccCCCcHHHHHHHHHHHHhh
Q psy9396 500 ELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKI 579 (1149)
Q Consensus 500 ~~a~~leGl~r~~~~HaaGvvIs~~~l~~~~Pl~~~~~~~~~~tq~d~~~~e~~GLlK~D~LGl~~Ltii~~~~~~i~~~ 579 (1149)
++|++|||+|||+|+|||||||+++||+++|||+.+.++ .++|||||+++|++||||||||||+|||+|++|+++|+++
T Consensus 560 ~~A~~leGl~R~~s~Ha~GvVIs~~~l~~~vPl~~~~~~-~~vtQfd~~~~E~lGLlK~DfLGL~~LT~I~~a~~~i~~~ 638 (1220)
T 2hpi_A 560 EVAMRLEGLNRHASVHAAGVVIAAEPLTDLVPLMRDQEG-RPVTQYDMGAVEALGLLKMDFLGLRTLTFLDEARRIVKES 638 (1220)
T ss_dssp HHHHHSTTCEEEEEEEEEEEEECSSCGGGTSCEEECTTC-CEEESSCHHHHHTTTBEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCcCCcCCCEEEEeCCccccccCceECCCC-CEEEeeccHhHHHCCCceEEeCCCCchHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999986555 5999999999999999999999999999999999999998
Q ss_pred cCCCCCcCCCCCCCCCHHHHHHHhcCCcCccccCCCHhHHHHHHhcCCCCHHHHHHHHhccCCCcccchHHHHHhhcC-C
Q psy9396 580 NTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-E 658 (1149)
Q Consensus 580 ~~~~~~id~~~ip~dD~~t~~ll~~g~T~GvFQ~ES~gm~~~l~~~~P~~f~dl~a~~aL~RPGp~~~i~~yi~rk~g-~ 658 (1149)
++ .++|+++||+||++||+||++|+|.|||||||+|||++|+++||++|+||||++||||||||++|++||+|||| +
T Consensus 639 ~g--~~id~~~ipldD~~ty~ll~~g~T~GVFQlES~gm~~~L~~lkP~~feDlva~~ALyRPGPm~~i~~yi~rk~g~e 716 (1220)
T 2hpi_A 639 KG--VELDYDRLPLDDPKTFELLSRGETKGVFQLESGGMTATVRGLKPRRLEDIIALVSLYRPGPMEHIPTYIRRHHGQE 716 (1220)
T ss_dssp HC--CCCCGGGCCTTCHHHHHHHHTTCCTTCTTCCSHHHHHHHHHHCCCSHHHHHHHHHHCSTTGGGHHHHHHHHHTTCS
T ss_pred hC--CCCCHHhCCCccHHHHHHHhCCCcccccccCCHHHHHHHHHcCCCCHHHHHHHHhhcCCCchhhhHHHHHhCCCCC
Confidence 84 88999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CCCC---CCc--chhhccccccCeehhHHHHHHHHHHHcCCCchhhhHHHHHhCCCChHHHHHHHHHHHHHHHHcCCCHH
Q psy9396 659 YFNY---PDP--RTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKH 733 (1149)
Q Consensus 659 ~v~y---~~p--~l~~iL~~TyGvivYQEQvM~ia~~~agfs~~eAD~lRram~KK~~~~m~~~~~~F~~ga~~~g~~~~ 733 (1149)
+|+| +|| .|++||++|||||||||||||||+++||||+||||+||||||||+.++|+++|++|++||++||++++
T Consensus 717 ~v~y~~~~~p~~~Le~iL~~TyGv~vYQEQVMqia~~~AGfslgeAD~LRRAMgKK~~~~m~~~r~~F~~g~~~~G~~~~ 796 (1220)
T 2hpi_A 717 PVSYAEFPHAEKYLRPILDETYGIPVYQEQIMQIASQVAGYSLGEADLLRRAMGKKRVEEMQKHRERFVRGAKERGVPEE 796 (1220)
T ss_dssp CCCCTTSTTTHHHHHHHHGGGTTCCCBHHHHHHHHHHHSCCCHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHSCCSH
T ss_pred CcccCCCCCchHHHHHHhcccCCeEeeHHHHHHHHHHHcCCCchHHHHHHHhhccCcHHHHHHHHHHHHHHHHHcCCCHH
Confidence 9999 999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCChhhHHHHHHHHHHHHHHhhcChHHHHHHhcccccCChHHHHHHHHHHHhhCCCeeeCCcccc
Q psy9396 734 KANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINL 813 (1149)
Q Consensus 734 ~a~~i~~~i~~fa~YgFnksHa~aYa~~ay~~AylK~~yP~~f~~a~l~~~~~~~~k~~~~~~e~~~~~gi~ilppdin~ 813 (1149)
.|++||++|++||+||||||||+|||++||||||||+|||+|||||+||+.+++++|+..|+.||++ |||+|+|||||+
T Consensus 797 ~a~~ifd~i~~Fa~YgFnKSHAaAYa~laYqtAyLK~hyP~eF~aAlLt~~~~~~~k~~~~i~ear~-~Gi~vlppdIN~ 875 (1220)
T 2hpi_A 797 EANRLFDMLEAFANYGFNKSHAAAYSLLSYQTAYVKAHYPVEFMAALLSVERHDSDKVAEYIRDARA-LGIPVLPPDVNR 875 (1220)
T ss_dssp HHHHHHHHHHHHTTSCBCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTTCHHHHHHHHHHHHT-TTCCEECCCTTT
T ss_pred HHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHhCHHHHHHHHhHhhcCCchHHHHHHHHHHH-CCCeeCCCceee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred cCCCceeeeecCCCCCeEEecccccCCccHHHHHHHHHHHh-cCCCCCHHHHHhhcccCCCCHHHHHHHHHcCCCCCcch
Q psy9396 814 SKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892 (1149)
Q Consensus 814 S~~~f~~~~~~~~~~~~I~~gl~~Ikgvg~~~~~~i~~~r~-~g~f~~~~df~~r~~~~~~~~~~le~Li~~Gafd~~~~ 892 (1149)
|.+.|+++ +++||+||++|||||+.++++|+++|+ +|||+|++|||+|++.+.+||+++|+||++||||+||
T Consensus 876 S~~~f~v~------~~~Ir~GL~aIkgvg~~~~~~Iv~~R~~~g~f~sl~Df~~Rv~~~~~nk~~le~Li~aGAfD~lg- 948 (1220)
T 2hpi_A 876 SGFDFKVV------GEEILFGLSAVKNVGEMAARAILEERERGGPFKSLGDFLKRLPEQVVNKRALESLVKAGALDAFG- 948 (1220)
T ss_dssp CCSSCEEE------TTEEECCSTTSSSCCHHHHHHHHHHHHHSCSCCSHHHHHHHSCTTTSCHHHHHHHHHHTTTGGGS-
T ss_pred cCCccEEe------CCeeeehhhhcCCCCHHHHHHHHHHHHhcCCCCCHHHHHHhccccCCCHHHHHHHHhcCcccCcC-
Confidence 99999998 368999999999999999999999998 7999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC-CCCcccccccccCCCCCCChHHHHHHHHHHhCccccccchHHHHHHHh
Q psy9396 893 KRYMLVASIDVALKNAEKTKKFINQLSLFKN-DDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIR 971 (1149)
Q Consensus 893 ~R~~ll~~l~~~~~~~~~~~~~~~~~~q~~L-~~~~~~~~~~~~~~~~~~~~~e~l~~EkE~LG~yls~HPl~~~~~~l~ 971 (1149)
||++|+++++.+++++...+++ ...+|++| +.. . .+++++.++|+..|+|.+|+|+||||+|+|||+.|+. ++
T Consensus 949 ~R~~ll~~~~~~~~~~~~~~~~-~~~gq~~LF~~~--~--~~~~~~~~~~~~~e~l~~E~e~lG~yls~HPl~~~~~-l~ 1022 (1220)
T 2hpi_A 949 DRARLLASLEPLLRWAAETRER-GRSGLVGLFAEV--E--EPPLVEASPLDEITMLRYEKEALGIYVSGHPVLRYPG-LR 1022 (1220)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH-HTTCCCSSSSCC--C--CCCCCCCCCCCHHHHHHHHHHHHSSCCSCCGGGGCTH-HH
T ss_pred cHHHHHHHHHHHHHHHHHHHHh-hhcccccccccc--c--cccCcCCCCCChHHHHHHHHHHhCcccccChHHHHHH-HH
Confidence 9999999999999988877666 67899998 421 1 1246678899999999999999999999999999999 98
Q ss_pred hcccccccccC-------CCCceEEEEEEEeeeEeeecCC-cEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEE
Q psy9396 972 QFIPIYLSELK-------PTYSCTVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVS 1043 (1149)
Q Consensus 972 ~~~~~~i~~l~-------~~~~v~v~G~I~~vk~~~TK~G-~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~ 1043 (1149)
.+..+++.+|. .+..++++|+|+++|++.||+| +|+|+||||.||.+|++|||++|+++++.+.++.+|+|+
T Consensus 1023 ~~~~~~~~~l~~~~~~~~~g~~v~v~G~v~~~~~~~Tk~G~~maf~tleD~tg~~evvvf~~~~~~~~~~l~~~~~~~v~ 1102 (1220)
T 2hpi_A 1023 EVASCTIEELSEFVRELPGKPKVLLSGMVEEVVRKPTRSGGMMARFTLSDETGALEVVVFGRAYEGVSPKLKEDIPLLVL 1102 (1220)
T ss_dssp HHCSSCTTTHHHHHSSSSSSCEEEEEEEECCC------------CEEEEETTEEEEEC-------------CTTCEEEEE
T ss_pred hcCCccHHHHhhhhhhccCCCeEEEEEEEEEEEEeecCCCCeEEEEEEEECCCCEEEEEcHHHHHHHHHHhccCCEEEEE
Confidence 87767788874 2337999999999999999999 899999999999999999999999999999999999999
Q ss_pred EEEEeeccCCceEEEEccccccHHHHHhcCcEEEEEecCc----chHHHHHHHHHhcCCCCCccEEEEEEecCceeEEEE
Q psy9396 1044 GKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRT----FNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMK 1119 (1149)
Q Consensus 1044 G~v~~~~~~~~~~ii~~~i~~l~~~~~~~~~~l~i~l~~~----~~l~~l~~il~~~~G~G~~~V~l~~~~~~~~~~~~~ 1119 (1149)
|+|+.+ + .+++++++++++++++ +..+.++|+++.. +.+.+|+++|.+|+| ++||++++. .......++
T Consensus 1103 G~v~~~--~-~~~l~~~~i~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~G--~~~v~~~~~-~~~~~~~~~ 1175 (1220)
T 2hpi_A 1103 AEVEKG--E-ELRVLAQAVWTLEEVL-EAPKALEVEVDHALLDEKGVARLKSLLDEHPG--SLPVYLRVL-GPFGEALFA 1175 (1220)
T ss_dssp EEEC--------CEEEEEEEEHHHHT-TSCEEEEEEECSCCCTTTC-CHHHHHHHTSEE--EEEEEEEEE-CSSSEEEEE
T ss_pred EEEEEC--C-CcEEEEeeeecHHHHh-hhCceEEEEeCccccCHHHHHHHHHHHHhCCC--CceEEEEEe-cCCceEEEE
Confidence 999864 3 6899999999998876 4455799999654 468899999999998 999999998 654455677
Q ss_pred cCCcceecCcHHHHHHHHh
Q psy9396 1120 FPLNYKVQPIDDLKLALIN 1138 (1149)
Q Consensus 1120 l~~~~~v~~~~~l~~~L~~ 1138 (1149)
+ ..|+| +++++.+|+.
T Consensus 1176 l-~~~~v--~~~~~~~l~~ 1191 (1220)
T 2hpi_A 1176 L-REVRV--GEEALGLLEA 1191 (1220)
T ss_dssp E-EEEEE--CSTHHHHHTT
T ss_pred e-cCCcc--CHHHHHHHHH
Confidence 8 78999 8899999988
No 2
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Probab=100.00 E-value=2.8e-249 Score=2315.23 Aligned_cols=894 Identities=49% Similarity=0.847 Sum_probs=853.7
Q ss_pred CCC-ccccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhCCCeeEeeeeeeecccccCCC
Q psy9396 1 MIP-QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIENKK 79 (1149)
Q Consensus 1 m~~-~fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~GIKpIiG~Ei~v~~~~~~~~ 79 (1149)
|+| .|+||||||.||+|||+++|++||++|+++|+++||||||++|+|+++|+++|++.|||||+|||+++.++.....
T Consensus 1 M~M~~~vdLH~HT~~S~lDG~~~~~elv~~A~~~Gl~alAITDH~~~~G~~~~~~~~~~~gIk~I~G~Ei~~~~~~~~~~ 80 (910)
T 2hnh_A 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDLLGDE 80 (910)
T ss_dssp CCCCCCCCCCBCCGGGSSSCCSCHHHHHHHHHHTTCSEEEECCBTCCTTHHHHHHHHHHHTCEEEEEEEEEEECTTTTTC
T ss_pred CCCCceeeecccccCchhcccCCHHHHHHHHHHCCCCEEEEEeCCcchhHHHHHHHHHHCCCeEEEEEEEEEecCCCCcc
Confidence 654 4999999999999999999999999999999999999999999999999999999999999999999986421123
Q ss_pred CccEEEEEcccHHHHHHHHHHHHHHHhhccCCcccccHHHHhccccCCCeEEEeCCCcchHHHHHhcCChHHHHHHHHHH
Q psy9396 80 PSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRW 159 (1149)
Q Consensus 80 ~~hlllLAkN~~Gy~nL~kL~S~~~~~~~~~~~p~i~~e~L~~~~~~~glIiis~~~~g~i~~~l~~~~~~~a~~~~~~~ 159 (1149)
.+|+++||+|.+||+|||+++|.+++++++...|+++.++|.+ +++|+|++++|+.|++.+++.+++.+.+.+.+.+|
T Consensus 81 ~~hlv~la~n~~g~~nL~~l~s~~~~~~~~~~~p~i~~~~L~~--~~~glI~isg~~~G~v~~~l~~~~~e~a~~~a~~~ 158 (910)
T 2hnh_A 81 LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIE--LNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFY 158 (910)
T ss_dssp CEEEEEEECSHHHHHHHHHHHHHHHHHCCCTTCCCEETTHHHH--SCTTEEEECCGGGSHHHHHHHHTCHHHHHHHHHHH
T ss_pred cceEEEEEcCHHHHHHHHHHHHHHHhhccccCCCCCCHHHHHH--hCCCCEEEECCCcchHHHHHhcCCHHHHHHHHHHH
Confidence 4799999999999999999999999988752479999999999 99999999999999999999999999999999999
Q ss_pred HHhCCCCeEEEEccCCCcchHHHHHHHHHHHHhcCCCEEEecCccccCccCchHHHHHHHHHcCCccccccccccCCcCC
Q psy9396 160 SKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239 (1149)
Q Consensus 160 ~~~f~~~~ylEi~~~~~~~~~~~n~~l~~lA~~~~iplVatnDvhyl~~eD~~~~~vL~aI~~g~~l~~~~~~~~~~~~~ 239 (1149)
.++|++++|+|+++|+.+.+...|..++++|+++|+|+||||||||++++|+.+|++|.||++|++++++++....++++
T Consensus 159 ~~~f~~~~yLEi~~~~~~~~~~~n~~l~~lA~~~giplVAtnDvHy~~~~D~~~~dvL~aI~~g~~l~~~~~~~~~~~~~ 238 (910)
T 2hnh_A 159 EEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQ 238 (910)
T ss_dssp HHHCTTSEEEEECCSSCTTHHHHHHHHHHHHHHHTCCEEECCCBCBSSGGGHHHHHHHHHHHHTCCTTCTTSCCCCCTTC
T ss_pred HHhcCCCEEEEEcCCCChhHHHHHHHHHHHHHHhCCCEEEeCCcccCChhhhHHHHHHHHHHcCCccCcccccccCchhc
Confidence 99999999999999998888999999999999999999999999999999999999999999999999999877777888
Q ss_pred CCCCHHHHHHHhcChHHHHHHHHHHHHhccccccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhCCChhhhhhh
Q psy9396 240 NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEIYKCE 319 (1149)
Q Consensus 240 ~~~s~~em~~~f~~~~~a~~nt~~ia~~c~~~~~~~~~~lP~~~~p~~~~~~~~l~~l~~~gl~~r~~~~~~~~~~~~~~ 319 (1149)
||||++||.++|+++|+|++||++||++|++++++.++++|+|+.|+ .++++||+++|++|+++||....|+....+..
T Consensus 239 ylks~~em~~~f~~~~eal~nt~~Ia~~c~~~~~~~~~~~P~~~~p~-~~~~~~L~~l~~~g~~~ry~~~~~~~~~~~~~ 317 (910)
T 2hnh_A 239 YMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD-MSTEDYLVKRAKEGLEERLAFLFPDEEERLKR 317 (910)
T ss_dssp BCCCHHHHHHHTTTCHHHHHHHHHHHHHCCCCCCCSSCCCCCCCCTT-SCHHHHHHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred ccCCHHHHHHHHhhhHHHHHHHHHHHHhceEeeccCCccCCCCCCCC-CCHHHHHHHHHHHHHHHHhcccCCcccccccC
Confidence 99999999999999999999999999999999999999999999998 89999999999999999995421221000012
Q ss_pred hHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCCcccCCCcchhHHHHHHHhcCCccCCCCCCCcceeccCCCCC
Q psy9396 320 KLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRI 399 (1149)
Q Consensus 320 ~~~~~~Rl~~EL~vI~~~gf~~YFLiv~D~v~~ak~~gi~vGpGRGSaagSlVaY~LgIT~vDPl~~~LlFERFLnpeR~ 399 (1149)
.++|++||+|||+||++|||++|||||||||+|||++||+||||||||||||||||||||+||||+|||||||||||||+
T Consensus 318 ~~~~~~Rl~~EL~vI~~~gf~~YFLiV~d~v~~a~~~gi~vGpGRGSaagSlVay~LgIT~vDPl~~~LlFERFLnpeR~ 397 (910)
T 2hnh_A 318 RPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERV 397 (910)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCBCSCCTTGGGCHHHHHTTSSCSCTTTTTCCGGGTSCTTSC
T ss_pred CHHHHHHHHHHHHHHHhCCCcceeeHHHHHHHHHHHCCceeCCCcccHHHHHHHHHhCCCCcCccccCCchhhccCCcCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeecCCCchHhHHHHHHHHhCcccEEEEEecccchhhhHHHHHHHhcCCCHHHHHHHHccCCCCCCCCcchHHHh
Q psy9396 400 SMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479 (1149)
Q Consensus 400 smPDIDiDf~~~~R~~vi~yv~~kYG~~~Va~I~Tf~t~~ak~airdv~r~lg~~~~~~~~i~k~ip~~~~~~~~l~~a~ 479 (1149)
||||||||||++||++||+||++|||++|||||+|||||++|+||||||||||+|++++|++||+||...+ +|+++++
T Consensus 398 ~~PDIDiDf~~~rR~evi~Yv~~kYG~~~va~i~T~~t~~~k~aiRDvgrvlg~~~~~~d~iak~ip~~~~--~~l~~a~ 475 (910)
T 2hnh_A 398 SMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAF 475 (910)
T ss_dssp CCCCCCCEECGGGHHHHHHHHHHHHCGGGEEEECCEEECCHHHHHHHHHHHTTCCHHHHHHHHTTSCCCTT--CCHHHHH
T ss_pred CCCCeeeecccccHHHHHHHHHHHhCcccEEEEeehhhhhHHHHHHHHHHHhCCCHHHHHHHHhhCCCccC--CCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888 8999999
Q ss_pred hhChHHHHHhhccHHHHHHHHHHHHcccccCCccccccEEEEcCCCCCccccceeeCCCCceEeeccccchhhcCCccee
Q psy9396 480 KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFD 559 (1149)
Q Consensus 480 ~~~~~l~~~~~~~~~~~~l~~~a~~leGl~r~~~~HaaGvvIs~~~l~~~~Pl~~~~~~~~~~tq~d~~~~e~~GLlK~D 559 (1149)
+++|+|++++++++.+++++++|++|||+|||+|+|||||||+|+||+++|||++++++++++|||||+++|++||||||
T Consensus 476 ~~~~~l~~~~~~~~~~~~~~~~a~~leG~~R~~~~Ha~GvVI~~~~l~~~~Pl~~~~~~~~~~tq~d~~~~e~~GLlK~D 555 (910)
T 2hnh_A 476 EAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFD 555 (910)
T ss_dssp HHCTHHHHHHHHCHHHHHHHHHHHHHTTCEEEECSSCCEEEECSSCGGGTCCEECCTTSCSCEESSCHHHHHHTTCEEEE
T ss_pred hhCHHHHhhhhcCHHHHHHHHHHHHhCCCCCcCCcCCCEEEEeCCccccccceeEcCCCCceEEecccHHHHHCCCeeEe
Confidence 99999999999999999999999999999999999999999999999999999998777679999999999999999999
Q ss_pred ccCCCcHHHHHHHHHHHHhh----cCCCCCcCCCCCCCCCHHHHHHHhcCCcCccccCCCHhHHHHHHhcCCCCHHHHHH
Q psy9396 560 FLGLTTLSILDKTIYFIKKI----NTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIA 635 (1149)
Q Consensus 560 ~LGl~~Ltii~~~~~~i~~~----~~~~~~id~~~ip~dD~~t~~ll~~g~T~GvFQ~ES~gm~~~l~~~~P~~f~dl~a 635 (1149)
||||+|||+|++|+++|+++ + +.++|+++||+|||+||+||++|+|.|||||||+|||++|+++||++|+||||
T Consensus 556 ~LGl~~Lt~I~~a~~~i~~~~~~~~--g~~~d~~~ip~dD~~t~~ll~~g~t~GvFQ~ES~g~~~~L~~lkP~~f~Dlva 633 (910)
T 2hnh_A 556 FLGLRTLTIINWALEMINKRRAKNG--EPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIA 633 (910)
T ss_dssp ECCCCHHHHHHHHHHHHHHTTTTTT--CCCCCGGGCCSCCHHHHHHHHTTCCTTSTTCCSHHHHHHHHHHCCCSHHHHHH
T ss_pred eccCCcHHHHHHHHHHHHhhhcccc--CCCCCHhhCCCccHHHHHHHhCCCccceeccCCHHHHHHHHHcCCCCHHHHHH
Confidence 99999999999999999998 6 37899999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCccc--chHHHHHhhcC-CCCCCCCcc-----hhhccccccCeehhHHHHHHHHHHHcCCCchhhhHHHHHhC
Q psy9396 636 LISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIG 707 (1149)
Q Consensus 636 ~~aL~RPGp~~--~i~~yi~rk~g-~~v~y~~p~-----l~~iL~~TyGvivYQEQvM~ia~~~agfs~~eAD~lRram~ 707 (1149)
++||||||||+ ||++||+|||| ++|+|+||. |++||++|||||||||||||||+++||||+||||.||||||
T Consensus 634 ~~aL~RPGP~~~~~i~~yi~rk~g~~~v~y~~p~~~~~~L~~iL~~TyGv~vyQEQvMqia~~~agfs~geAD~lRramg 713 (910)
T 2hnh_A 634 LVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG 713 (910)
T ss_dssp HHHHSSHHHHTTTHHHHHHHHHTTSSCCCSBCSSSBCGGGHHHHGGGTTCCCBHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHhccCCCcccccccHHHHhhccCCCCcccCCcchhhhHHHHHhhhcCceEeeHHHHHHHHHHHcCCChHHHHHHHHHhC
Confidence 99999999996 89999999999 999999999 99999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhhHHHHHHHHHHHHHHhhcChHHHHHHhcccccCC
Q psy9396 708 KKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDD 787 (1149)
Q Consensus 708 KK~~~~m~~~~~~F~~ga~~~g~~~~~a~~i~~~i~~fa~YgFnksHa~aYa~~ay~~AylK~~yP~~f~~a~l~~~~~~ 787 (1149)
||+.++|+++|++|++||++||++++.|++||++|++||+||||||||+|||++||||||||+|||+|||||+||+.+++
T Consensus 714 kK~~~~m~~~r~~f~~g~~~~G~~~~~a~~i~~~i~~Fa~YgFnkSHaaaYa~~ay~tAylK~hyP~~F~aa~l~~~~~~ 793 (910)
T 2hnh_A 714 KKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDN 793 (910)
T ss_dssp HCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCBCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTTC
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHccChHHHHHHHhhcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCCCeeeCCcccccCCCceeeeecCCCCCeEEecccccCCccHHHHHHHHHHHhcCC-CCCHHHHHh
Q psy9396 788 TNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERKFGF-FTNLFDFTK 866 (1149)
Q Consensus 788 ~~k~~~~~~e~~~~~gi~ilppdin~S~~~f~~~~~~~~~~~~I~~gl~~Ikgvg~~~~~~i~~~r~~g~-f~~~~df~~ 866 (1149)
++|+..|++||++ +||+|+|||||+|++.|+++ .+++||+||++|||||++++++|+++|++|| |+|++|||+
T Consensus 794 ~~k~~~~i~e~~~-~Gi~vlppdin~S~~~f~~~-----~~~~Ir~gl~~Ikgvg~~~~~~Iv~~R~~g~~f~s~~Df~~ 867 (910)
T 2hnh_A 794 TEKVVGLVDECWR-MGLKILPPDINSGLYHFHVN-----DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCA 867 (910)
T ss_dssp HHHHHHHHHHHHH-TTCCEECCCTTTCBSSCEEC-----TTSCEECBGGGSTTCCHHHHHHHHHHHHTTCCCSSHHHHTT
T ss_pred chhHHHHHHHHHH-cCCeECCcceeecCCCeEEe-----cCCeeehhHHhcCCCCHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 9999999999999 99999999999999999996 3568999999999999999999999999899 999999999
Q ss_pred hcccCCCCHHHHHHHHHcCCCCCcchhHHHHHHHHHHHHHH
Q psy9396 867 RIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVALKN 907 (1149)
Q Consensus 867 r~~~~~~~~~~le~Li~~Gafd~~~~~R~~ll~~l~~~~~~ 907 (1149)
|++.+.+||+++|+||++||||+||.||++|+|+++.++++
T Consensus 868 R~~~~~~~~~~le~Li~aGafd~l~~~R~~ll~~~~~~~~~ 908 (910)
T 2hnh_A 868 RTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKA 908 (910)
T ss_dssp SSCSSSSCHHHHHHHHHTTTTTTTSSCHHHHHTTSSSSGGG
T ss_pred hccccCCCHHHHHHHHHCCCCcccchhHHHHHHHHHHHHHh
Confidence 99988999999999999999999999999999988766543
No 3
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=100.00 E-value=3.4e-195 Score=1817.17 Aligned_cols=789 Identities=24% Similarity=0.351 Sum_probs=682.9
Q ss_pred CccccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhCCCeeEeeeeeeeccccc------
Q psy9396 3 PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIE------ 76 (1149)
Q Consensus 3 ~~fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~GIKpIiG~Ei~v~~~~~------ 76 (1149)
++|+|||+||.||++||+++|++||++|+++|+++|||||||+|+|+++|+++|++.|||||+|||+++.++..
T Consensus 114 ~~~vdLH~HT~~S~lDG~~~~~eLv~~A~~~G~~aiAITDH~~~~G~~~~~~~a~~~gIk~I~G~E~~~~~~~~~~~~~~ 193 (1041)
T 3f2b_A 114 EKRVELHLHTPMSQMDAVTSVTKLIEQAKKWGHPAIAVTDHAVVQSFPEAYSAAKKHGMKVIYGLEANIVDDGVPIAYNE 193 (1041)
T ss_dssp SCCCBCCBCCTTSTTTCCSCHHHHHHHHHHTTCSCEEECCBSCCTTHHHHHHHHHHHTCCEEEEEEEEEECC--------
T ss_pred cceEEcccCCcCccccccCCHHHHHHHHHHCCCCEEEEecccchhhHHHHHHHHHHCCCEEEEEEEEEEEeCCccccccc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999876421
Q ss_pred -------CCCCccEEEEEcccHHHHHHHHHHHHHHHhhccCCcccccHHHHhccccCCCeEEEeCCCcchHHHHHhcCCh
Q psy9396 77 -------NKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRN 149 (1149)
Q Consensus 77 -------~~~~~hlllLAkN~~Gy~nL~kL~S~~~~~~~~~~~p~i~~e~L~~~~~~~glIiis~~~~g~i~~~l~~~~~ 149 (1149)
....+|+++||||++||+|||+|+|.++++++++ +|++++++|.+ |++|||++|+|..|++.++++.++.
T Consensus 194 ~~~~~~~~~~~~hlvlLAkN~~Gy~nL~kLvS~a~~~~~~~-~pri~~~~L~~--~~egLi~~s~c~~Gev~~~l~~~~~ 270 (1041)
T 3f2b_A 194 THRRLGSGSGPFHVTLLAQNETGLKNLFKLVSLSHIQYFHR-VPRIPRSVLVK--HRDGLLVGSGCDKGELFDNLIQKAP 270 (1041)
T ss_dssp ----------CEEEEEEECSHHHHHHHHHHHHHHHTTTCSS-SCCEEHHHHHH--TCTTEEEECCSSSSSSTTC------
T ss_pred ccccccccCCCceEEEEeCCHHHHHHHHHHHHHHHHhcccC-CCCcCHHHHHh--ccCCeEEEcCccccHHHHHHhcCCH
Confidence 1245899999999999999999999999988764 79999999999 9999999999999999998888887
Q ss_pred HHHHHHHHHH--HHhCCCCeEEEEccCCC-c---chHHHHHHHHHHHHhcCCCEEEecCccccCccCchHHHHHHHHHcC
Q psy9396 150 DIAENFARRW--SKIFPDNFYIEIQRFKQ-P---NMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEG 223 (1149)
Q Consensus 150 ~~a~~~~~~~--~~~f~~~~ylEi~~~~~-~---~~~~~n~~l~~lA~~~~iplVatnDvhyl~~eD~~~~~vL~aI~~g 223 (1149)
+.|++.+.+| .++|+.++|.++++++. + .++.+|+.++++|+++|+|+||||||||++++|+.+|++|.|++.+
T Consensus 271 ~~a~~~~~~y~ylei~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~la~~~~~p~VAT~dvhy~~~ed~~~~dvL~~~~~~ 350 (1041)
T 3f2b_A 271 EEVEDIARFYDFLEVHPPDVYKPLIEMDYVKDEEMIKNIIRSIVALGEKLDIPVVATGNVHYLNPEDKIYRKILIHSQGG 350 (1041)
T ss_dssp --CCTTGGGCSBEEECCGGGGCCC----CCSCHHHHHHHHHHHHHHHHHTTCCEEECCCBSBSSGGGHHHHHHHHHTTGG
T ss_pred HHHHHHHHHhhHHHhcCccccHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCEEEeCCceecCHhhHHHHHHHHhhccc
Confidence 7777665544 34555434433333332 1 2357899999999999999999999999999999999999998765
Q ss_pred CccccccccccCCcCCCCCCHHHHHHHhcChHH------HHHHHHHHHHhccccccccCCCCCCCCCCCCCCHHHHHHHH
Q psy9396 224 EILSNTKRIKKFTKEQNFKTQSEMIKLFYDIPS------AIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISK 297 (1149)
Q Consensus 224 ~~l~~~~~~~~~~~~~~~~s~~em~~~f~~~~~------a~~nt~~ia~~c~~~~~~~~~~lP~~~~p~~~~~~~~l~~l 297 (1149)
. ++.+ ...++++||||++||.++|+++|+ |++||++||++|++ + .+..|.+..|...++++||+++
T Consensus 351 ~---~~~~-~~~~~~~ylks~~EM~~~F~~lpe~~a~e~al~NT~~IA~~c~~-~---~~~~~~~~~P~~~~~~~~Lr~l 422 (1041)
T 3f2b_A 351 A---NPLN-RHELPDVYFRTTNEMLDCFSFLGPEKAKEIVVDNTQKIASLIGD-V---KPIKDELYTPRIEGADEEIREM 422 (1041)
T ss_dssp G---SSST-TSCCCCCBCCCHHHHHHHHGGGHHHHHHHHHTHHHHHHHHTCCC-C---CSSCSSCBCCCCTTHHHHHHHH
T ss_pred C---Cccc-cccChhhccCCHHHHHHHhhhCchhhhHHHHHHHHHHHHHhccc-c---cccCCcCCCCCCCCHHHHHHHH
Confidence 3 2322 234578999999999999999998 59999999999997 2 2445666667777899999999
Q ss_pred HHHHHHHHHhhhCCChhhhhhhhHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCCcccCCCcchhHHHHHHHhc
Q psy9396 298 SKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLS 377 (1149)
Q Consensus 298 ~~~gl~~r~~~~~~~~~~~~~~~~~~~~Rl~~EL~vI~~~gf~~YFLiv~D~v~~ak~~gi~vGpGRGSaagSlVaY~Lg 377 (1149)
|++|+.+||+... .++|++||+|||+||.+|||++|||||||||+|||++||+||| ||||||||||||||
T Consensus 423 ~~~g~~~ryg~~~---------p~~v~~RLe~EL~vI~~~Gf~~YFLIV~D~V~~A~~~gilvG~-RGSaAgSlVAy~Lg 492 (1041)
T 3f2b_A 423 SYRRAKEIYGDPL---------PKLVEERLEKELKSIIGHGFAVIYLISHKLVKKSLDDGYLVGS-RGSVGSSFVATMTE 492 (1041)
T ss_dssp HHHHHHHHHCSSC---------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCEE-CGGGGGCHHHHHTT
T ss_pred HHHHHHHHhccCC---------CHHHHHHHHHHHHHHHhCCCcHhHHHHHHHHHHHHHCCCcccC-cccHHHHHHHHHhc
Confidence 9999999996432 2579999999999999999999999999999999999999997 99999999999999
Q ss_pred CCccCCCC-----------------------------------------CCCcceeccCCCCCCCCCceeecCCCchHhH
Q psy9396 378 ITDIDPLS-----------------------------------------YNLLFERFLNPNRISMPDFDIDFCPEGRDRV 416 (1149)
Q Consensus 378 IT~vDPl~-----------------------------------------~~LlFERFLnpeR~smPDIDiDf~~~~R~~v 416 (1149)
||+||||+ |||||||||||||++|||||||||++||++|
T Consensus 493 ITeVDPl~phy~c~~c~~~ef~~~~~~~~g~dlp~k~cp~cg~~~~~dg~~LlFERFLnpeR~~~PDIDlDF~~erR~eV 572 (1041)
T 3f2b_A 493 ITEVNPLPPHYVCPNCKHSEFFNDGSVGSGFDLPDKNCPRCGTKYKKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRA 572 (1041)
T ss_dssp SCSCCCSCSEEECTTTCCEEECCSSCCSCGGGSCCCBCTTTCCBCEEECCCCCTHHHHTTTSCSCCCEEEEEETTTHHHH
T ss_pred CCCcCCCcccccCccccccccccccccccccCCccccCccccccccccCCCcChhhccCCCCCCCCCcceECCCCcHHHH
Confidence 99999999 9999999999999999999999999999999
Q ss_pred HHHHHHHhCcccEEEEEecccchhhhHHHHHHHhcCCCHHHHHHHHccCCCCCCCCcchHHHhhhChHHHHHhhccHHHH
Q psy9396 417 IQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEVR 496 (1149)
Q Consensus 417 i~yv~~kYG~~~Va~I~Tf~t~~ak~airdv~r~lg~~~~~~~~i~k~ip~~~~~~~~l~~a~~~~~~l~~~~~~~~~~~ 496 (1149)
|+||++|||++|||||+|||||++|+|+..|- ++... .+ +++. ..
T Consensus 573 i~Yv~~kYG~~~Va~i~T~gT~a~K~A~g~v~-----------~~~~~----~~--~~~~------------------~~ 617 (1041)
T 3f2b_A 573 HNYTKVLFGEDNVYRAGTIGTVADKTAYGFVK-----------AYASD----HN--LELR------------------GA 617 (1041)
T ss_dssp HHHHHHHHCTTSEEEEEEEEECCHHHHHHHHH-----------HHHHH----TT--CCCC------------------HH
T ss_pred HHHHHHHhCcCCEEEeehHHHHHHHHHHHHHH-----------hhhhh----cC--CCcC------------------hH
Confidence 99999999999999999999999999986542 22211 11 2221 24
Q ss_pred HHHHHHHHcccccCCccccccEEEEcCC--CCCccccceeeCC---CCceEeeccccchhhcCCcceeccCCCcHHHHHH
Q psy9396 497 QLIELAKQVEGIIRNVGMHAGGVLIAPS--KLINFCPLYKQEG---MTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDK 571 (1149)
Q Consensus 497 ~l~~~a~~leGl~r~~~~HaaGvvIs~~--~l~~~~Pl~~~~~---~~~~~tq~d~~~~e~~GLlK~D~LGl~~Ltii~~ 571 (1149)
+++++|++|||+|||+|+|||||||+|+ ||++++||+++++ +++.+|||||+++|+ ||||||||||+|||+|+.
T Consensus 618 ei~~lA~~leG~pR~~g~HagGvVI~p~~~~l~d~~Plq~~~dd~~~~~~~Tqfd~~~ie~-gLlK~D~LGL~~LTvI~~ 696 (1041)
T 3f2b_A 618 EIDRLAAGCTGVKRTTGQHPGGIIVVPDYMEIYDFTPIQYPADDTSSEWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRM 696 (1041)
T ss_dssp HHHHHHHHHTTCEEEEEEEEEEEEECCTTSCGGGTCCEECGGGCTTCSSCEEEEEHHHHTT-TBCEEEEEEEHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcCCCCCCEEEEECCCCccceeeeeEEcCCCcccCceeeecchhhhhc-CcceeehhcCCchHHHHH
Confidence 7889999999999999999999999986 6999999998543 358999999999999 999999999999999999
Q ss_pred HHHHHHhhcCCCCCcCCCCCCCCCHHHHHHHhcCCcCccc--cCCC------------HhHHHHHHhcCCCCHHHHHHHH
Q psy9396 572 TIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVF--QLES------------QGMKNMLKEAKPDYFEEIIALI 637 (1149)
Q Consensus 572 ~~~~i~~~~~~~~~id~~~ip~dD~~t~~ll~~g~T~GvF--Q~ES------------~gm~~~l~~~~P~~f~dl~a~~ 637 (1149)
+.+++ .+|+.+||+|||+||+||++|+|+||| |+|| +|||+||+++||++|+|||+++
T Consensus 697 ~~~~~--------~id~~~IPldD~~ty~l~~~gdTlGVF~~QiES~~gt~gipqf~s~gmr~mL~~lkP~~F~DLVai~ 768 (1041)
T 3f2b_A 697 LQDLS--------GIDPKTIPTDDPDVMGIFSSTEPLGVTPEQIMCNVGTIGIPEFGTRFVRQMLEETRPKTFSELVQIS 768 (1041)
T ss_dssp HHHHH--------CCCGGGCCSCCHHHHHTTTCSGGGTSCHHHHTCSSSCTTSTTTTSHHHHHHHHHHCCCSHHHHHHHH
T ss_pred HHhcc--------CCCHHHCCCCCHHHHHHHhCCCcCccCHHHhCCccccccccccCcHHHHHHHHHhCCCCHHHHHhhh
Confidence 87752 378999999999999999999999998 6666 5899999999999999999999
Q ss_pred hccCCCcc--cchHHHHHhhcCCCCCCCCcchhhccccccCeehhHHHHHHHHHHHcCCCchhh----hHHHHHhCCCCh
Q psy9396 638 SLYRPGPM--DLIKNFCRRKHGEYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQA----DLLRRAIGKKKT 711 (1149)
Q Consensus 638 aL~RPGp~--~~i~~yi~rk~g~~v~y~~p~l~~iL~~TyGvivYQEQvM~ia~~~agfs~~eA----D~lRram~KK~~ 711 (1149)
||+||+|. .+.+++| .++||.|+++|++|||||+||. .+|||+++| |.+||++|+|
T Consensus 769 gl~~g~~v~l~n~~~~i--------~~g~~~L~~vl~~t~~Imvy~i--------~aG~s~~~A~~iM~~~Rkgkg~~-- 830 (1041)
T 3f2b_A 769 GLSHGTDVWLGNAQELI--------QNGTCTLSEVIGCRDDIMVYLI--------YRGLEPSLAFKIMESVRKGKGLT-- 830 (1041)
T ss_dssp HHTSSTTSTTTTHHHHH--------HTTSSCGGGSCCSHHHHHHHHH--------HTTCCHHHHHHHHHHHTTTCCCC--
T ss_pred ccccCCcchhccccccc--------cCCCcCHHHHhhhhhhHHHHHH--------hCCCChHHHHHHHHHHHhhCCCC--
Confidence 99999864 2444444 4567889999999999999973 589999999 6888877655
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhhHHHHHHHHHHHHHHhhcChHHHHHHhcccccCChH--
Q psy9396 712 SEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTN-- 789 (1149)
Q Consensus 712 ~~m~~~~~~F~~ga~~~g~~~~~a~~i~~~i~~fa~YgFnksHa~aYa~~ay~~AylK~~yP~~f~~a~l~~~~~~~~-- 789 (1149)
++|++||.+||++++.+ +.+ ++++||||||||||||++||||||||+|||+|||||+||+.++++|
T Consensus 831 -------~~~~~~m~~~gv~~~~i----~~~-~ki~YgFnKSHAaAYal~ay~tAylK~hyP~eF~AAlls~~~~~~d~~ 898 (1041)
T 3f2b_A 831 -------PEFEAEMRKHDVPEWYI----DSC-KKIKYMFPKAHAAAYVLMAVRIAYFKVHHPLLYYASYFTVRAEDFDLD 898 (1041)
T ss_dssp -------HHHHHHHHHTTCCHHHH----HHH-HHCSCCCCHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTCCCCCHH
T ss_pred -------HHHHHHHHHcCCCHHHH----HHH-HHhccCCCccchhhhHHHHHHHHHHHhcCHHHHHHHHHhcCcccccHH
Confidence 56888999999999754 445 5689999999999999999999999999999999999998766532
Q ss_pred -------------------------------HHHHHHHHHHhhCCCeeeCCcccccC-CCceeeeecCCCCCeEEecccc
Q psy9396 790 -------------------------------KIKILVKDAIKTCGLSILPPNINLSK-YYFFPIIESDGKHKKIRYGLGA 837 (1149)
Q Consensus 790 -------------------------------k~~~~~~e~~~~~gi~ilppdin~S~-~~f~~~~~~~~~~~~I~~gl~~ 837 (1149)
++..|++||++ +||+|+|||||+|. ..|+++ +++||+||++
T Consensus 899 ~~~~g~~~i~~~~~~in~~~~~~t~kdk~~~~~~~~v~Ea~~-~Gi~vlppDIn~S~~~~f~v~------~~~Ir~gL~a 971 (1041)
T 3f2b_A 899 AMIKGSAAIRKRIEEINAKGIQATAKEKSLLTVLEVALEMCE-RGFSFKNIDLYRSQATEFVID------GNSLIPPFNA 971 (1041)
T ss_dssp HHHHCHHHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHH-TTCEECCCCTTTCCSSCCEEE------TTEEECCGGG
T ss_pred HHhcCHHHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHH-cCCeeCcceEEecCCcceEEE------CCEEEEchHh
Confidence 25789999999 99999999999999 689998 4799999999
Q ss_pred cCCccHHHHHHHHHHHhcCCCCCHHHHHhhcccCCCCHHHHHHHHHcCCCCCcchhHHHH
Q psy9396 838 IKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYML 897 (1149)
Q Consensus 838 Ikgvg~~~~~~i~~~r~~g~f~~~~df~~r~~~~~~~~~~le~Li~~Gafd~~~~~R~~l 897 (1149)
|||||+++|++|+++|++|||+|++||++|+ .+||+++|+||++||||+|+ .|.+|
T Consensus 972 IkGlG~~~a~~Iv~aR~~gpF~s~~Df~~R~---~v~k~~lE~Li~aGAfd~l~-~~~ql 1027 (1041)
T 3f2b_A 972 IPGLGTNVAQAIVRAREEGEFLSKEDLQQRG---KLSKTLLEYLESRGCLDSLP-DHNQL 1027 (1041)
T ss_dssp STTCCHHHHHHHHHHHHTSCCCSHHHHHHHH---TCCHHHHHHHHHTTTTTTSC-SSCSC
T ss_pred hCCCCHHHHHHHHHHHhCCCCCCHHHHHHHH---CcCHHHHHHHHHCCCCcCCC-chhhh
Confidence 9999999999999999999999999999995 59999999999999999998 44443
No 4
>2yb1_A Amidohydrolase; HET: AMP; 1.90A {Chromobacterium violaceum} PDB: 2yb4_A
Probab=99.76 E-value=5.6e-18 Score=190.50 Aligned_cols=188 Identities=18% Similarity=0.124 Sum_probs=133.4
Q ss_pred ccccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhCCCeeEeeeeeeecccccCCCCccE
Q psy9396 4 QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIENKKPSRL 83 (1149)
Q Consensus 4 ~fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~GIKpIiG~Ei~v~~~~~~~~~~hl 83 (1149)
+++|||+||.|| ||..+|++++++|++.|+++||||||+++.|+.+|+++|++.||++|+|+|+++.+. +...|+
T Consensus 2 ~~~DLH~Ht~~S--Dg~~~~~elv~~A~~~Gl~~iaiTDH~~~~g~~~~~~~~~~~gi~vi~G~Ei~~~~~---~~~~hi 76 (292)
T 2yb1_A 2 ANIDLHFHSRTS--DGALTPTEVIDRAAARAPALLALTDHDCTGGLAEAAAAAARRGIPFLNGVEVSVSWG---RHTVHI 76 (292)
T ss_dssp CCEECCBCCTTT--TCSSCHHHHHHHHHTTCCSEEEECCBTCCTTHHHHHHHHHHTTCCEEEEEEEEEEET---TEEEEE
T ss_pred CccccccCCCcc--CCCCCHHHHHHHHHHCCCCEEEEecCCccccHHHHHHHHHHcCCEEEEEEEEEEecC---CceeEE
Confidence 589999999999 999999999999999999999999999999999999999999999999999998753 124699
Q ss_pred EEEEcccH--HHHHHHHHHHHHHHhh----------c-cC----------------C-----------------------
Q psy9396 84 LLLVKNNN--GYLQLCELLSKAYIEN----------I-NY----------------G----------------------- 111 (1149)
Q Consensus 84 llLAkN~~--Gy~nL~kL~S~~~~~~----------~-~~----------------~----------------------- 111 (1149)
++|+.|.. ||++++++++..+.+. . +. .
T Consensus 77 l~~~~d~~~~~l~~~~~~~~~~r~~r~~~~~~~l~~~g~~~~~~~v~~~a~~~~~igr~H~a~~lv~~g~~~~~~~~f~~ 156 (292)
T 2yb1_A 77 VGLGIDPAEPALAAGLKSIREGRLERARQMGASLEAAGIAGCFDGAMRWCDNPEMISRTHFARHLVDSGAVKDMRTVFRK 156 (292)
T ss_dssp EEESCCTTCHHHHHHHHHHHTTHHHHHHHHHHHHHHTTCTTHHHHHHTTCSSGGGCCHHHHHHHHHHTTSSSSHHHHHHH
T ss_pred EEEecCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHhccCCCCcCHHHHHHHHHHcCCcCCHHHHHHH
Confidence 99999875 9999998875432111 0 00 0
Q ss_pred -----------cccccHHHHhcc-ccCCCeEEEeCCCcchHHHHHhcCChHHHHHHHHHHHHhCCCCeEEEEccCCCcch
Q psy9396 112 -----------RAEIRIEWLEKN-KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179 (1149)
Q Consensus 112 -----------~p~i~~e~L~~~-~~~~glIiis~~~~g~i~~~l~~~~~~~a~~~~~~~~~~f~~~~ylEi~~~~~~~~ 179 (1149)
....+.+++.+. ....|+.++.|+..-.. ..+...+.+..+.+. ....+|++.....
T Consensus 157 yl~~~~~~~v~~~~~~~~~~i~~i~~~Gg~~VlAHP~r~~~-------~~~~~~~~l~~l~~~--g~~giEv~~~~~~-- 225 (292)
T 2yb1_A 157 YLTPGKPGYVSHQWASLEDAVGWIVGAGGMAVIAHPGRYDM-------GRTLIERLILDFQAA--GGQGIEVASGSHS-- 225 (292)
T ss_dssp SSSTTSTTCCCCCCBCHHHHHHHHHHTTCEEEECCGGGSSC-------CHHHHHHHHHHHHHT--TCCEEEEEETTCC--
T ss_pred HHccCCceeccCCCCCHHHHHHHHHHcCCEEEEECcCcccc-------chhhHHHHHHHHHhC--CCCEEEEeCCCCC--
Confidence 011122222111 12356666666532110 111112233333321 2347999987653
Q ss_pred HHHHHHHHHHHHhcCCCEEEecCccccC
Q psy9396 180 NFQIQQFINIASNINLPIVATHPIQFLK 207 (1149)
Q Consensus 180 ~~~n~~l~~lA~~~~iplVatnDvhyl~ 207 (1149)
...++.+.++|+++|++++.++|+|...
T Consensus 226 ~~~~~~~~~~a~~~gl~~t~GSDaH~~~ 253 (292)
T 2yb1_A 226 LDDMHKFALHADRHGLYASSGSDFHAPG 253 (292)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECCBCSTT
T ss_pred HHHHHHHHHHHHHcCCceEEeeCCCCcC
Confidence 3457788999999999999999999775
No 5
>3o0f_A Putative metal-dependent phosphoesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: AMP; 1.94A {Bifidobacterium adolescentis} PDB: 3e0f_A*
Probab=99.66 E-value=8.8e-16 Score=172.05 Aligned_cols=188 Identities=13% Similarity=0.035 Sum_probs=129.6
Q ss_pred ccccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhCCCeeEeeeeeeecccccCCCCccE
Q psy9396 4 QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIENKKPSRL 83 (1149)
Q Consensus 4 ~fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~GIKpIiG~Ei~v~~~~~~~~~~hl 83 (1149)
+++|||+||.|| ||..+|+++|++|++.|+++||||||++++|+.+|+++|++.||++|+|+|+++..+ +...|+
T Consensus 13 ~~~DLH~Hs~~S--DG~~~~~elv~~A~~~Gl~~iaiTDH~~~~g~~~~~~~~~~~gi~~i~GvEis~~~~---~~~vHi 87 (301)
T 3o0f_A 13 QGWDIHCHTVFS--DGTETPRTLVEQARKLGLHGVAIADHDTTAGWDEATEASEEIGLPLLLGTEITAVDE---DVSVHM 87 (301)
T ss_dssp SSEEEEECCTTT--TCSSCHHHHHHHHHHTTCSEEEECCBTCCTTHHHHHHHHHHHTCCEEEEEEEEEEET---TEEEEE
T ss_pred ceEEeeECCCCC--CCCCCHHHHHHHHHHcCCCEEEEcCCCccccHHHHHHHHHhcCCEEEEEEEEEEEeC---CceEEE
Confidence 689999999999 999999999999999999999999999999999999999999999999999998763 245799
Q ss_pred EEEEccc--HHHHHHHHHHHHHHHh----------------------------------------------------hcc
Q psy9396 84 LLLVKNN--NGYLQLCELLSKAYIE----------------------------------------------------NIN 109 (1149)
Q Consensus 84 llLAkN~--~Gy~nL~kL~S~~~~~----------------------------------------------------~~~ 109 (1149)
+.|..|. ..++++++-....+.+ .|.
T Consensus 88 L~~~~d~~~~~l~~~l~~~~~~R~~R~~~i~~~L~~~~~i~~e~v~~~a~~~~~~~igR~HiA~~Lv~~G~~~~~~~aF~ 167 (301)
T 3o0f_A 88 LAFQYDPSNEHISSMFANTRAARLRRTKRMVERLSQDFPITWDDVLAQVKEGERTTIGRPHIADALVAAGVYETRSDAFA 167 (301)
T ss_dssp EEESCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHTTCTTGGGSCCCHHHHHHHHHHTTSCSSHHHHHT
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHH
Confidence 9999874 3555554432211100 000
Q ss_pred ----C----C--cccccHHHHhcc-ccCCCeEEEeCCCcchHHHHHhcCChHHHHHHHHHHHHhCCCCeEEEEccCCCcc
Q psy9396 110 ----Y----G--RAEIRIEWLEKN-KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPN 178 (1149)
Q Consensus 110 ----~----~--~p~i~~e~L~~~-~~~~glIiis~~~~g~i~~~l~~~~~~~a~~~~~~~~~~f~~~~ylEi~~~~~~~ 178 (1149)
. + ...++.++..+. .-..|+.++.||..-...+ .... .+.+.++.+.-. --+|+.... .
T Consensus 168 ~~l~~g~~~yV~~~~~~~~eaI~~I~~aGGvaVLAHP~r~~~~r--~~~~----~~~l~~l~~~Gl--dgIEv~~~~--~ 237 (301)
T 3o0f_A 168 DAVSAKSKYYIPTPSPSTHEVIAAVKGAGGVVVAAHAGDPQRNR--RLLS----DEQLDAMIADGL--DGLEVWHRG--N 237 (301)
T ss_dssp TTTSTTSTTCCCCCCCBHHHHHHHHHHTTCEEEECSTTCTTTCS--SCCC----HHHHHHHHHHTC--CEEEEESTT--S
T ss_pred HHHcCCCccccCccCCCHHHHHHHHHHCCCEEEecChhhhcccc--ccCc----HHHHHHHHHCCC--CEEEEeCCC--C
Confidence 0 0 112333332221 1356777887774311000 0001 123334443322 368887643 2
Q ss_pred hHHHHHHHHHHHHhcCCCEEEecCcccc
Q psy9396 179 MNFQIQQFINIASNINLPIVATHPIQFL 206 (1149)
Q Consensus 179 ~~~~n~~l~~lA~~~~iplVatnDvhyl 206 (1149)
....++.+.++|+++|+...+.+|.|..
T Consensus 238 ~~~~~~~~~~lA~~~gL~~tgGSD~Hg~ 265 (301)
T 3o0f_A 238 PPEQRERLLTIAARHDLLVTGGSDWHGK 265 (301)
T ss_dssp CHHHHHHHHHHHHHHTCEEEECCCBCGG
T ss_pred CHHHHHHHHHHHHHcCCceEEEcCCCCC
Confidence 3556778999999999999999999974
No 6
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=99.59 E-value=3.6e-15 Score=170.25 Aligned_cols=186 Identities=15% Similarity=0.077 Sum_probs=129.8
Q ss_pred CccccccccccCchhhccccHHHHHHHHHHcCCCEEEEecC------------CchhhHHHHHHHHHhCCCeeEeeeeee
Q psy9396 3 PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDL------------SNLFGIIKFYKSAYNKGIKPIIGCDVW 70 (1149)
Q Consensus 3 ~~fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH------------~nl~G~~~f~~~ak~~GIKpIiG~Ei~ 70 (1149)
++++|||+||.|| ||..++++++++|++.|+++|||||| +++.|+.++++.|++.||++|+|+|++
T Consensus 18 ~~~~DlH~Ht~~S--Dg~~~~~elv~~A~~~Gl~~iaiTDH~~~~~~~~~~~~d~~~g~~~~~~~a~~~gi~vi~G~Ei~ 95 (343)
T 3e38_A 18 TLKCDFHMHSVFS--DGLVWPTVRVDEAYRDGLDAISLTEHIEYRPHKQDVVSDHNRSFDLCREQAEKLGILLIKGSEIT 95 (343)
T ss_dssp EEEEECCBCCTTT--TCSBCHHHHHHHHHHTTCSEECCEEESSCCTTTTTBCCCTTHHHHHHHHHHHHHTCEECCEEEEE
T ss_pred EEEEECCCCCCCC--CCCCCHHHHHHHHHHcCCCEEEECCCCcccccccccchhHHHHHHHHHHHHHhCCCEEEEEEEEE
Confidence 3689999999999 99999999999999999999999999 678999999999999999999999999
Q ss_pred ecccccCCCCccEEEEEcccHHHHHHHHHHHHHHHhhccCCcccccHHHHhcc-ccCCCeEEEeCCCcchHHHHHhcC--
Q psy9396 71 ITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKN-KYQDGLIALSGAHLGDIGIAVQNG-- 147 (1149)
Q Consensus 71 v~~~~~~~~~~hlllLAkN~~Gy~nL~kL~S~~~~~~~~~~~p~i~~e~L~~~-~~~~glIiis~~~~g~i~~~l~~~-- 147 (1149)
+.. ...|++.|.-+.. .. .+..+.+++.+. .-.++++++.||..... ...+
T Consensus 96 ~~~-----~~gHiL~l~~~~~-------------~~-----~~~~~~~eli~~v~~~Ggl~iiAHP~r~~~---~~~g~~ 149 (343)
T 3e38_A 96 RAM-----APGHFNAIFLSDS-------------NP-----LEQKDYKDAFREAKKQGAFMFWNHPGWDSQ---QPDTTK 149 (343)
T ss_dssp CST-----TTCEEEEESCSCS-------------GG-----GCCSSHHHHHHHHHHTTCEEEECCTTCTTT---SSSCCC
T ss_pred EcC-----CCcEEEEEeCCCC-------------CC-----CcccCHHHHHHHHHHCCCEEEEeCCCCccc---Cccccc
Confidence 863 2479999986652 00 112233332221 12356777766654210 0011
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEEEccCCCcchHHHHHHHHHHHHhcCCCEEEecCccccC------------------cc
Q psy9396 148 RNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLK------------------KT 209 (1149)
Q Consensus 148 ~~~~a~~~~~~~~~~f~~~~ylEi~~~~~~~~~~~n~~l~~lA~~~~iplVatnDvhyl~------------------~e 209 (1149)
......+.+ . . ..--.+|+.+.... |+.+..+|+.+++|.++++|+|... .+
T Consensus 150 ~~~~~~e~l---~-~-~~iDaIEv~N~~~~-----n~~A~~la~~~~l~~~~GSDaH~~~~~~y~~~~~iGr~~T~v~~~ 219 (343)
T 3e38_A 150 WWPEHTALY---Q-E-GCMHGIEVANGHLY-----MPEAIQWCLDKNLTMIGTSDIHQPIQTDYDFEKGEHRTMTFVFAK 219 (343)
T ss_dssp CCHHHHHHH---H-T-TCCSEEEEEETTEE-----CTHHHHHHHHHTCEEEEECCBCSCHHHHCCGGGTCCCCEEEEEES
T ss_pred cccchHHHh---c-c-cCccEEEEcCCCCc-----cHHHHHHHhhCCCceEeECCCCCCcccccccccccccceEEEecC
Confidence 111111111 1 0 11237898765432 4456789999999999999999982 23
Q ss_pred CchHHHHHHHHHcCCcc
Q psy9396 210 EFLAHEVRTCIAEGEIL 226 (1149)
Q Consensus 210 D~~~~~vL~aI~~g~~l 226 (1149)
+...-+++.||+.|.+.
T Consensus 220 ~~S~e~ll~ALr~Gr~~ 236 (343)
T 3e38_A 220 ERSLQGIREALDNRRTA 236 (343)
T ss_dssp SSSHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHcCCeE
Confidence 45678889999998864
No 7
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A
Probab=99.46 E-value=1.5e-13 Score=151.73 Aligned_cols=201 Identities=11% Similarity=0.085 Sum_probs=113.7
Q ss_pred cccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchh-------h---------HHHHHHHHHhC-CCeeEeee
Q psy9396 5 FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLF-------G---------IIKFYKSAYNK-GIKPIIGC 67 (1149)
Q Consensus 5 fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~-------G---------~~~f~~~ak~~-GIKpIiG~ 67 (1149)
++|||+||.|| .||..+++++|++|++.|+++||||||+++. + ..++.+++++. ||++++|+
T Consensus 1 ~~DlH~Ht~~S-~DG~~~~ee~v~~A~~~Gl~~iaiTDH~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~i~i~~G~ 79 (267)
T 2yxo_A 1 MVDSHVHTPLC-GHAEGHPEAYLEEARAKGLKGVVFTDHSPMPPWYDPESRMRLEALPFYLLALERVRERAQDLYVGIGL 79 (267)
T ss_dssp CEEEEECCGGG-SSCCSCHHHHHHHHHHTTCSEEEEEEECCCCTTSSGGGSCCGGGHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred CCccCcCcCCC-CCCCCCHHHHHHHHHHcCCCEEEEcCCCCCCcccCccccccHHHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 36999999999 6999999999999999999999999999876 3 22223334444 99999999
Q ss_pred eeeeccccc-------CCCCccEEEEEcccH---HHHHHHHHHHHHHHhhccCCccc----ccHHHHhccccCCCeEEEe
Q psy9396 68 DVWITNEIE-------NKKPSRLLLLVKNNN---GYLQLCELLSKAYIENINYGRAE----IRIEWLEKNKYQDGLIALS 133 (1149)
Q Consensus 68 Ei~v~~~~~-------~~~~~hlllLAkN~~---Gy~nL~kL~S~~~~~~~~~~~p~----i~~e~L~~~~~~~glIiis 133 (1149)
|+.+.++.. ....++.++...+.. ||.+ ..+.+......+. --.+.+.+...+.++.++.
T Consensus 80 Ei~~~~~~~~~~~~~l~~~~~d~vi~s~H~~~~~~~~~------~~~~~~~~~~~~~~~~~~y~~~~~~~i~~g~~~vla 153 (267)
T 2yxo_A 80 EADFHPGTEGFLAQLLRRYPFDYVIGSVHYLGAWPLDH------PDHQEEYAWRDLKEVFRAYFQEVEKAARSGLFHAIG 153 (267)
T ss_dssp EEECCTTCHHHHHHHHHSSCCSCEEEECCCBTTBCTTC------GGGGGGGGGSCHHHHHHHHHHHHHHHHTSSCCSEES
T ss_pred EeccCCCcHHHHHHHHHhCCCCEEEEeeEecCCcCCCc------HHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCEEe
Confidence 999875310 011345555443321 1110 0000000000000 0012222210123444555
Q ss_pred CCCcchHHHHHhcCC-hHH----HHHHHHHHHHhCCCCeEEEEccCCCcch---HHHHHHHHHHHHhcCCCEEEecCccc
Q psy9396 134 GAHLGDIGIAVQNGR-NDI----AENFARRWSKIFPDNFYIEIQRFKQPNM---NFQIQQFINIASNINLPIVATHPIQF 205 (1149)
Q Consensus 134 ~~~~g~i~~~l~~~~-~~~----a~~~~~~~~~~f~~~~ylEi~~~~~~~~---~~~n~~l~~lA~~~~iplVatnDvhy 205 (1149)
|+..... ..... ... ..+.+..+.+ .+.++|++..+.... ..-+..++++|+++|+|+++++|+|.
T Consensus 154 Hp~~~~~---~~~~~~~~~~~~~~~~~l~~~~~---~g~~iEvn~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~gSDaH~ 227 (267)
T 2yxo_A 154 HLDLPKK---FGHRLPEEALLELAEPALRAVAE---AGLFLDVNTAGLRRPAKEVYPAPALLRRARELGIGLVLGSDAHR 227 (267)
T ss_dssp CTTGGGT---TSCCCCHHHHHHHHHHHHHHHHH---HTCEEEEEGGGGGSTTCSCBSCHHHHHHHHHHTCCEEEECCBSS
T ss_pred CccHHHH---hCCCCChHHHHHHHHHHHHHHHH---cCCEEEEEchHhcCCCCCCCCCHHHHHHHHHcCCCEEEecCCCC
Confidence 5432110 00000 111 2223333333 347999987654321 12256788999999999999999999
Q ss_pred cCccCchHHHHHH
Q psy9396 206 LKKTEFLAHEVRT 218 (1149)
Q Consensus 206 l~~eD~~~~~vL~ 218 (1149)
...-.....+++.
T Consensus 228 ~~~~~~~~~~a~~ 240 (267)
T 2yxo_A 228 PEEVGFAFPEVQA 240 (267)
T ss_dssp GGGTTTTHHHHHH
T ss_pred HHHHHhhHHHHHH
Confidence 8766644444433
No 8
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=99.41 E-value=3.1e-13 Score=165.26 Aligned_cols=180 Identities=13% Similarity=0.033 Sum_probs=113.5
Q ss_pred ccccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchhhH------HHHH------HHHHhCCCeeEeeeeeee
Q psy9396 4 QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGI------IKFY------KSAYNKGIKPIIGCDVWI 71 (1149)
Q Consensus 4 ~fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~G~------~~f~------~~ak~~GIKpIiG~Ei~v 71 (1149)
+++|||+||.|| ||..++++++++|++.|++++|||||+++.+. .+|+ +.+++.||++++|+|+++
T Consensus 327 ~~~DlH~HT~~S--DG~~t~eemv~~A~~~Gl~~IaiTDH~~~~~~~~~~~~~~~~~~~~~i~~l~~~gi~il~GiEv~i 404 (578)
T 2w9m_A 327 LRGMIHTHSTWS--DGGASIREMAEATLTLGHEFLGTADHSRAAYYANGLTIERLREQLKEIRELQRAGLPIVAGSEVDI 404 (578)
T ss_dssp CCEEEEECCTTT--TCSSCHHHHHHHHHHTTCSEEEECEEBTTCGGGTCBCHHHHHHHHHHHHHHHHTTCCEECEEEEEB
T ss_pred hceEEEecCCcc--CCCCCHHHHHHHHHHCCCeEEEEcCCCCccccccCCCHHHHHHHHHHHHHHHhcCCeEEEeeeecc
Confidence 579999999999 99999999999999999999999999987433 3443 134444999999999998
Q ss_pred cccccCC------CCccEEEEEcccHHHHHHHHHHHHHHHhhccCCcccccHHHHhccccCCCeEEEeCCCcchHHHHHh
Q psy9396 72 TNEIENK------KPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQ 145 (1149)
Q Consensus 72 ~~~~~~~------~~~hlllLAkN~~Gy~nL~kL~S~~~~~~~~~~~p~i~~e~L~~~~~~~glIiis~~~~g~i~~~l~ 145 (1149)
.++...+ ...++++.+-... +..+.. ......+.. ...|.+.+.+++.+.. +..
T Consensus 405 ~~~G~ld~~~~~l~~~D~vI~svH~~-----~~~~~~-----------~~~~~~~~a--i~~g~v~IlaHP~~~~--~~~ 464 (578)
T 2w9m_A 405 LDDGSLDFPDDVLGELDYVVVSVHSN-----FTLDAA-----------RQTERLIRA--VSHPLVTVLGHATGRL--LLR 464 (578)
T ss_dssp CTTSCBSSCHHHHTTSSEEEEECCSC-----TTSCHH-----------HHHHHHHHH--HTCSSCCEECSTTCCB--TTT
T ss_pred cCCcchhhHHHHHhcCCEEEEEeccC-----CCCCHH-----------HHHHHHHHH--HhcCCCeEEECcchhh--cCC
Confidence 7531100 1234454332110 000000 111222333 3456666666555432 111
Q ss_pred cCCh-HHHHHHHHHHHHhCCCCeEEEEccCCCcchHHHHHHHHHHHHhcCCCEEEecCccccCccCc
Q psy9396 146 NGRN-DIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEF 211 (1149)
Q Consensus 146 ~~~~-~~a~~~~~~~~~~f~~~~ylEi~~~~~~~~~~~n~~l~~lA~~~~iplVatnDvhyl~~eD~ 211 (1149)
+..+ ....+.+..+.+ .++++|++.++.... .+..++++|++ |+|+++++|+|+...-+.
T Consensus 465 ~~~~~~~~~~il~~~~e---~g~~lEIN~~~~r~~--~~~~~~~~a~e-Gl~i~igSDAH~~~~~~~ 525 (578)
T 2w9m_A 465 RPGYALDLDAVLGACEA---NGTVVEINANAARLD--LDWREALRWRE-RLKFAINTDAHVPGGLRD 525 (578)
T ss_dssp BCCCCCCHHHHHHHHHH---HTCEEEEECSTTTCB--SCHHHHHHHTT-TCCEEEECCCSSGGGGGG
T ss_pred CcCchhhHHHHHHHHHH---CCCEEEEECCCCCcC--cHHHHHHHHHc-CCEEEEECCCCChhhcch
Confidence 1111 111222222332 258999998875322 46788999999 999999999999887776
No 9
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=99.41 E-value=6.2e-13 Score=162.65 Aligned_cols=188 Identities=15% Similarity=0.110 Sum_probs=118.1
Q ss_pred CccccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchhhHH------HH------HHHH-Hh-CCCeeEeeee
Q psy9396 3 PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGII------KF------YKSA-YN-KGIKPIIGCD 68 (1149)
Q Consensus 3 ~~fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~G~~------~f------~~~a-k~-~GIKpIiG~E 68 (1149)
.+++|||+||.|| ||..++++++++|++.|++++|||||+.+.+.. +| ++.+ ++ .||++++|+|
T Consensus 336 ~~~~DlH~HT~~S--DG~~t~ee~v~~A~~~G~~~iaiTDH~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~i~i~~G~E 413 (575)
T 3b0x_A 336 QVKGDLQVHSTYS--DGQNTLEELWEAAKTMGYRYLAVTDHSPAVRVAGGPSPEEALKRVGEIRRFNETHGPPYLLAGAE 413 (575)
T ss_dssp GCCEEEEECCTTT--TCSCCHHHHHHHHHHTTCSEEEEEEECTTTTTSSCSCHHHHHHHHHHHHHHHHHHCSSEEEEEEE
T ss_pred hcCeeEeecCCcc--CCCCCHHHHHHHHHHCCCCEEEEcCCCCccccccCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 4689999999999 999999999999999999999999999876631 22 3333 34 4999999999
Q ss_pred eeecccccCC------CCccEEEEEcccHHHHHHHHHHHHHHHhhccCCcccccHHHHhccccCCCeEEEeCCCcchHHH
Q psy9396 69 VWITNEIENK------KPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGI 142 (1149)
Q Consensus 69 i~v~~~~~~~------~~~hlllLAkN~~Gy~nL~kL~S~~~~~~~~~~~p~i~~e~L~~~~~~~glIiis~~~~g~i~~ 142 (1149)
+++.++.... ..+.+++.+.+.. +...+ .......+.. ...|++.+.+++.+.+
T Consensus 414 i~~~~dg~l~~~~~~l~~~d~vL~svH~~-----~~~~~-----------~~~~~~l~~~--i~~g~v~IlaHp~~r~-- 473 (575)
T 3b0x_A 414 VDIHPDGTLDYPDWVLRELDLVLVSVHSR-----FNLPK-----------ADQTKRLLKA--LENPFVHVLAHPTARL-- 473 (575)
T ss_dssp EEBCTTSCBSSCHHHHTTCSEEEEECCSC-----TTSCH-----------HHHHHHHHHH--TTCTTCCEECSTTCCB--
T ss_pred ecccCCCCchhHHHHHhhCCEEEEEeeeC-----CCCCH-----------HHHHHHHHHH--HhcCCCeEEECCchhh--
Confidence 9887521100 1235555543321 00000 0111223333 4456666666665543
Q ss_pred HHhcCChH-HHHHHHHHHHHhCCCCeEEEEccCCCcchHHHHHHHHHHHHhcCCCEEEecCccccCccCchHHHHHH
Q psy9396 143 AVQNGRND-IAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRT 218 (1149)
Q Consensus 143 ~l~~~~~~-~a~~~~~~~~~~f~~~~ylEi~~~~~~~~~~~n~~l~~lA~~~~iplVatnDvhyl~~eD~~~~~vL~ 218 (1149)
+..+..++ ...+.+..+.+ .++++|++.++.... .+..+++++.++|+|+++++|+|+...-+ .....+.
T Consensus 474 ~~~r~~~~~~~~~il~~~~~---~g~~lEIN~~~~~~~--~~~~~~~~a~e~G~~~vigSDAH~~~~~~-~~~~~~~ 544 (575)
T 3b0x_A 474 LGRRAPIEADWEAVFQKAKE---KGVAVEIDGYYDRMD--LPDDLARMAYGMGLWISLSTDAHQTDHLR-FMELAVG 544 (575)
T ss_dssp TTTBCCCCCCHHHHHHHHHH---HTCEEEEECCTTTCB--SCHHHHHHHHHTTCCEEEECCBSSGGGGG-GHHHHHH
T ss_pred cCCCcCchHHHHHHHHHHHH---cCCEEEEeCCCCcCC--chHHHHHHHHHcCCeEEEECCCCChHHhh-hHHHHHH
Confidence 01111111 11122222222 358999998764322 35678899999999999999999988766 3444333
No 10
>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel, metallo-enzyme, STRU function project, S2F, unknown function; 1.57A {Escherichia coli} SCOP: c.6.3.1 PDB: 1m68_A 1pb0_A
Probab=99.38 E-value=1e-13 Score=151.20 Aligned_cols=184 Identities=11% Similarity=-0.010 Sum_probs=103.4
Q ss_pred ccccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCc-hhhHHH-HH----HHH--HhCCCeeEeeeeeeecccc
Q psy9396 4 QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSN-LFGIIK-FY----KSA--YNKGIKPIIGCDVWITNEI 75 (1149)
Q Consensus 4 ~fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~n-l~G~~~-f~----~~a--k~~GIKpIiG~Ei~v~~~~ 75 (1149)
+++|||+||.|| -||..+|++++++|++.|+++||||||++ ++|... .| +.+ +..||++|+|+|+++.+..
T Consensus 2 ~~~DlH~Ht~~S-d~g~~~~~e~v~~A~~~Gl~~iaiTDH~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~G~Ei~~~~~~ 80 (245)
T 1m65_A 2 YPVDLHMHTVAS-THAYSTLSDYIAQAKQKGIKLFAITDHGPDMEDAPHHWHFINMRIWPRVVDGVGILRGIEANIKNVD 80 (245)
T ss_dssp CCEECCBCCTTS-TTCCCCHHHHHHHHHHHTCCEEEEEEECTTSTTCCCTHHHHGGGGSCSEETTEEEEEEEEEEBCSTT
T ss_pred CceEeCcCCCCC-CCCCCcHHHHHHHHHHCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCeEEEEEEeeeeCCC
Confidence 589999999999 37888999999999999999999999998 777532 22 222 2359999999999986521
Q ss_pred cCCCCccEEEEEcccHHHHHHHHHHHHHHHhhccCCcccccHHHHhccccCCCeEEEeCCCcchHHHHHhcCChHHHHHH
Q psy9396 76 ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENF 155 (1149)
Q Consensus 76 ~~~~~~hlllLAkN~~Gy~nL~kL~S~~~~~~~~~~~p~i~~e~L~~~~~~~glIiis~~~~g~i~~~l~~~~~~~a~~~ 155 (1149)
.++ ......+.+|-.++...+...+....+....+.+.+.....++.++.|+..... ..+.+ +.
T Consensus 81 -----~~~---~~~~~~~~~ld~vi~~~h~~~~~~~~~~~~~~~~~~~i~~g~~~vlaHp~~~~~-----~~~~~---~~ 144 (245)
T 1m65_A 81 -----GEI---DCSGKMFDSLDLIIAGFHEPVFAPHDKATNTQAMIATIASGNVHIISHPGNPKY-----EIDVK---AV 144 (245)
T ss_dssp -----CCB---SCCHHHHHHCSEEEEECCTTTSCCCCHHHHHHHHHHHHHTSCCSEECCTTCTTS-----CCCHH---HH
T ss_pred -----Cch---hHHHHHHhhCCEEEEeecCCccCcchHHHHHHHHHHHHhCCCCCEEECCCCccc-----hhHHH---HH
Confidence 011 011111111000000000000000001111222221102244555555532210 11122 22
Q ss_pred HHHHHHhCCCCeEEEEccCCCc----chHHHHHHHHHHHHhcCCCEEEecCccccC
Q psy9396 156 ARRWSKIFPDNFYIEIQRFKQP----NMNFQIQQFINIASNINLPIVATHPIQFLK 207 (1149)
Q Consensus 156 ~~~~~~~f~~~~ylEi~~~~~~----~~~~~n~~l~~lA~~~~iplVatnDvhyl~ 207 (1149)
+..+.+ .+.++|++.++.. .....+..+.++++++|+|+++++|+|+..
T Consensus 145 ~~~~~~---~g~~iEvn~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~gSDaH~~~ 197 (245)
T 1m65_A 145 AEAAAK---HQVALEINNSSFLHSRKGSEDNCREVAAAVRDAGGWVALGSDSHTAF 197 (245)
T ss_dssp HHHHHH---HTCEEEEETTC----------CHHHHHHHHHHHTCCEEEECCBSSGG
T ss_pred HHHHHH---cCCEEEEECCCCcccCCCCCCchHHHHHHHHHcCCEEEEECCCCChH
Confidence 333332 2369999987652 112446788899999999999999999874
No 11
>2anu_A Hypothetical protein TM0559; predicted metal-dependent phosphoesterase (PHP famil structural genomics, joint center for structural genomics; 2.40A {Thermotoga maritima} SCOP: c.6.3.1
Probab=99.33 E-value=6.5e-12 Score=138.26 Aligned_cols=181 Identities=14% Similarity=0.101 Sum_probs=111.4
Q ss_pred ccccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCC----chhhHH-----------------------HHHHHH
Q psy9396 4 QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLS----NLFGII-----------------------KFYKSA 56 (1149)
Q Consensus 4 ~fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~----nl~G~~-----------------------~f~~~a 56 (1149)
.++|||+||.|| ||..++++++++|++.|++.||||||+ ++.|.. .+.+.+
T Consensus 20 ~~~DlH~Ht~~S--Dg~~t~ee~v~~A~~~Gl~~i~iTDH~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 97 (255)
T 2anu_A 20 LLCDFHVHTNMS--DGHLPLGEVVDLFGKHGVDVVSITDHIVDRRTLEQRKRNGEPLGAITEDKFQDYLKRLWREQKRAW 97 (255)
T ss_dssp EEEEEEECCTTT--TCSSCHHHHHHHHHHTTCSEEEEEEEEECHHHHHHHHHTTCCCCSCCSTTHHHHHHHHHHHHHHHH
T ss_pred EEEEEeecCCCc--CCCCCHHHHHHHHHHCCCCEEEEcCCCCcccccccccccccccccccHHHHHHHHHHHHHHHHhhc
Confidence 478999999999 999999999999999999999999998 466531 122334
Q ss_pred HhCCCeeEeeeeeeecccccCCCCccEEEEEcccHHHHHHHHHHHHHHHhhccCCcccccHHHHhcc-ccCCCeEEEeCC
Q psy9396 57 YNKGIKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKN-KYQDGLIALSGA 135 (1149)
Q Consensus 57 k~~GIKpIiG~Ei~v~~~~~~~~~~hlllLAkN~~Gy~nL~kL~S~~~~~~~~~~~p~i~~e~L~~~-~~~~glIiis~~ 135 (1149)
++.||++++|+|+.+.. ...|++.+..+. | . .|....+.+.+. ....++.++.++
T Consensus 98 ~~~~i~v~~G~Ei~~~~-----~~~h~l~~~~~~--~---------------~--~~~~~~~~~l~~i~~~g~~~ilaHp 153 (255)
T 2anu_A 98 EEYGMILIPGVEITNNT-----DLYHIVAVDVKE--Y---------------V--DPSLPVEEIVEKLKEQNALVIAAHP 153 (255)
T ss_dssp HHHSCEEEEEEEEEETT-----TTEEEEEESCCS--C---------------C--CTTSCHHHHHHHHHHTTCEEEECCC
T ss_pred cccCcEEEEEEEEeeCC-----CCeeEEEecccc--c---------------c--CCCCCHHHHHHHHHHCCCeEEEeCC
Confidence 56799999999999863 247888775332 0 0 122233332221 012455555554
Q ss_pred CcchHHHHHhcCChHHHHHHHHHHHHhCCCCeEEEEccCCCcchHHHHHHHHHHHHhcCCCEEEecCccccCc-------
Q psy9396 136 HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKK------- 208 (1149)
Q Consensus 136 ~~g~i~~~l~~~~~~~a~~~~~~~~~~f~~~~ylEi~~~~~~~~~~~n~~l~~lA~~~~iplVatnDvhyl~~------- 208 (1149)
...... ........ ...+.........+|++..+.. ..++++.|+|+++++|+|....
T Consensus 154 ~~~~~~--~~~~~~~~----~~~~~~~~~~~~aiEin~~~~~---------~~~~~~~g~~~~~gSDAH~~~~ig~~~~~ 218 (255)
T 2anu_A 154 DRKKQD--EEHLSWYL----WANMERFKDTFDAWEIANRDDL---------FNSVGVKKYRYVANSDFHELWHVYSWKTL 218 (255)
T ss_dssp CTTC-------CCCHH----HHSTTTTTTTCSEEEEEETTEE---------CHHHHHTTCCEEEECCBCSGGGGSSEEEE
T ss_pred Cccccc--cccccccc----cchhhhhhccCcEEEEcCCCch---------hhHHHHcCCceEeccCCCCCcccCCceEE
Confidence 332211 00000000 0001122233468999976521 1357889999999999998542
Q ss_pred --cCchHHHHHHHHHcCCc
Q psy9396 209 --TEFLAHEVRTCIAEGEI 225 (1149)
Q Consensus 209 --eD~~~~~vL~aI~~g~~ 225 (1149)
.+...-+++.|++.|..
T Consensus 219 ~~~~~t~~~i~~al~~~~~ 237 (255)
T 2anu_A 219 VKSEKNIEAIKEAIRKNTD 237 (255)
T ss_dssp EEECSSHHHHHHHHHHCSS
T ss_pred EecCCCHHHHHHHHHCCCc
Confidence 23445666667766653
No 12
>3dcp_A Histidinol-phosphatase; HISK, histidine biosynthesis, NESG, LMR141, structural genomics, PSI-2, protein structure initiative; 2.10A {Listeria monocytogenes str}
Probab=98.60 E-value=2.4e-07 Score=103.35 Aligned_cols=70 Identities=14% Similarity=0.084 Sum_probs=53.8
Q ss_pred ccccccccccCchhhcc-ccHHHHHHHHHHcCCCEEEEecCCchhhH----------------------HHHHHH---HH
Q psy9396 4 QFIHLRLHSEYSIIDGL-LRINDVIEAAANDYQPALAITDLSNLFGI----------------------IKFYKS---AY 57 (1149)
Q Consensus 4 ~fv~LHvHS~ySlldg~-~~ieeLV~~Ake~G~~AlAITDH~nl~G~----------------------~~f~~~---ak 57 (1149)
|.+++|+||.|| -+|. .++++++++|++.|++.+|||||....+. ..+.+. ++
T Consensus 1 m~~D~H~Ht~~s-~~~~~~~~~e~~~~A~~~G~~~i~~TdH~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~Y~~~i~~l~ 79 (283)
T 3dcp_A 1 MKRDGHTHTEFC-PHGTHDDVEEMVLKAIELDFDEYSIVEHAPLSSEFMKNTAGDKEAVTTASMAMSDLPYYFKKMNHIK 79 (283)
T ss_dssp CCEEEEECCTTC-TTSCCCCHHHHHHHHHHTTCCEEEEEEECCCCHHHHHTBCSCTHHHHTTSCCGGGHHHHHHHHHHHH
T ss_pred CCeEEeeCCCCC-CCCCCCCHHHHHHHHHHCCCCEEEEecCCCCcchhhhcccccccccccccchHHHHHHHHHHHHHHH
Confidence 368999999999 3355 69999999999999999999999876431 122222 22
Q ss_pred -h--CCCeeEeeeeeeeccc
Q psy9396 58 -N--KGIKPIIGCDVWITNE 74 (1149)
Q Consensus 58 -~--~GIKpIiG~Ei~v~~~ 74 (1149)
+ .+|++.+|+|+.+.++
T Consensus 80 ~~y~~~I~Il~GiE~d~~~g 99 (283)
T 3dcp_A 80 KKYASDLLIHIGFEVDYLIG 99 (283)
T ss_dssp HHTTTTCEEEEEEEEECCTT
T ss_pred HHccCCCeEEEEEEecccCC
Confidence 3 3799999999988764
No 13
>3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A
Probab=98.59 E-value=1.3e-07 Score=104.43 Aligned_cols=186 Identities=12% Similarity=0.098 Sum_probs=107.8
Q ss_pred cccccccccCchhhccccHHH---HHHHHHHcCCCEEEEecCCc----------hhhH-HHHHHHHHh--CCCeeEeeee
Q psy9396 5 FIHLRLHSEYSIIDGLLRIND---VIEAAANDYQPALAITDLSN----------LFGI-IKFYKSAYN--KGIKPIIGCD 68 (1149)
Q Consensus 5 fv~LHvHS~ySlldg~~~iee---LV~~Ake~G~~AlAITDH~n----------l~G~-~~f~~~ak~--~GIKpIiG~E 68 (1149)
++|+|+||.+|.-||..++++ ++++|.+.|++.|++|||.. +... .++.+..++ .+|++..|+|
T Consensus 1 m~D~H~H~~~~~ddG~~~~~~sl~~~~~a~~~G~~~i~~T~H~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~i~I~~G~E 80 (262)
T 3qy7_A 1 MIDIHCHILPAMDDGAGDSADSIEMARAAVRQGIRTIIATPHHNNGVYKNEPAAVREAADQLNKRLIKEDIPLHVLPGQE 80 (262)
T ss_dssp CEESSBCCSTTSSSSCSSHHHHHHHHHHHHHTTCCEEECCCBSEETTEECCHHHHHHHHHHHHHHHHHTTCCCEEECCCE
T ss_pred CEEEeecCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCEEecCeE
Confidence 469999999976699999997 99999999999999999963 1111 123333333 4789999999
Q ss_pred eeeccccc----CC-----CCccEEEEEcccHHHHHHHHHHHHHHHhhccCCcccccHHHHhccccCCCeEEEeCCCcch
Q psy9396 69 VWITNEIE----NK-----KPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGD 139 (1149)
Q Consensus 69 i~v~~~~~----~~-----~~~hlllLAkN~~Gy~nL~kL~S~~~~~~~~~~~p~i~~e~L~~~~~~~glIiis~~~~g~ 139 (1149)
+.+.++.. .. .....+|...... ..|.-..+.+.+..-..++-++.+|..-
T Consensus 81 v~~~~~~~~~l~~~~~~~l~~~~~vl~e~~~~-------------------~~~~~~~~~l~~i~~~g~v~ILAHPeRy- 140 (262)
T 3qy7_A 81 IRIYGEVEQDLAKRQLLSLNDTKYILIEFPFD-------------------HVPRYAEQLFYDLQLKGYIPVIAHPERN- 140 (262)
T ss_dssp EECCTTHHHHHHTTCSCCGGGSSEEEEECCTT-------------------CCCTTHHHHHHHHHHTTCEEEEECGGGC-
T ss_pred EecchhHHHHHhcCCCcEECCceEEEEeCCCc-------------------cCHHHHHHHHHHHHHCCCcEEEECCCcc-
Confidence 99865411 00 0112333321110 0111112222221012344555554321
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCeEEEEccCCCcc-hHHHHHHHHHHHHhcCCCEEEecCccccCccCchHHHHHH
Q psy9396 140 IGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPN-MNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRT 218 (1149)
Q Consensus 140 i~~~l~~~~~~~a~~~~~~~~~~f~~~~ylEi~~~~~~~-~~~~n~~l~~lA~~~~iplVatnDvhyl~~eD~~~~~vL~ 218 (1149)
.++.. +.+ .+..+.+ .+.++|++..+... .....+...+.+.+.|++++.++|+|.....-....+++.
T Consensus 141 --~~~~~-~~~----~l~~l~~---~G~~iEiN~~s~~g~~g~~~~~~~~~~~~~gl~~~igSDaH~~~~r~~~~~~a~~ 210 (262)
T 3qy7_A 141 --REIRE-NPS----LLYHLVE---KGAASQITSGSLAGIFGKQLKAFSLRLVEANLIHFVASDAHNVKTRNFHTQEALY 210 (262)
T ss_dssp --HHHHH-CTH----HHHHHHH---TTCEEEEEHHHHHTTTCHHHHHHHHHHHHTTCCCEEECCBCSSSSSCCCHHHHHH
T ss_pred --ccccc-cHH----HHHHHHH---CCCEEEEECCccCcccchHHHHHHHHHHhCCCeEEEEccCCCCCCCCchHHHHHH
Confidence 11111 111 2233332 34789999654321 1133566777888899999999999987755555555555
Q ss_pred HH
Q psy9396 219 CI 220 (1149)
Q Consensus 219 aI 220 (1149)
.+
T Consensus 211 ~l 212 (262)
T 3qy7_A 211 VL 212 (262)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 14
>2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule biogenesis/degradation, manganese, hydrolase, exopolysaccharide synthesis; 1.90A {Streptococcus pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A
Probab=98.48 E-value=3.3e-07 Score=100.17 Aligned_cols=174 Identities=16% Similarity=0.142 Sum_probs=99.6
Q ss_pred ccccccccccCchhhccccHH---HHHHHHHHcCCCEEEEecCCc--hhh-----HH-HH---HHHHHh--CCCeeEeee
Q psy9396 4 QFIHLRLHSEYSIIDGLLRIN---DVIEAAANDYQPALAITDLSN--LFG-----II-KF---YKSAYN--KGIKPIIGC 67 (1149)
Q Consensus 4 ~fv~LHvHS~ySlldg~~~ie---eLV~~Ake~G~~AlAITDH~n--l~G-----~~-~f---~~~ak~--~GIKpIiG~ 67 (1149)
.++|+|+||.+|.-||..+++ +++++|.+.|++.|++|||.. ++. .. .| .+..++ .+|++.+|+
T Consensus 4 ~m~D~H~Ht~~~~ddg~~~~e~~~e~i~~A~~~Gi~~i~~TdH~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~i~~G~ 83 (247)
T 2wje_A 4 GMIDIHSHIVFDVDDGPKSREESKALLAESYRQGVRTIVSTSHRRKGMFETPEEKIAENFLQVREIAKEVASDLVIAYGA 83 (247)
T ss_dssp CEEECCBCCSTTSSSSCSSHHHHHHHHHHHHHTTEEEEECCCEEBTTTBCCCHHHHHHHHHHHHHHHHHHCTTCEEECCC
T ss_pred CCEEEecccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEee
Confidence 368999999999779999888 799999999999999999974 222 11 11 111222 489999999
Q ss_pred eeeeccccc----CC--C---CccEEEEEcccHHHHHHHHHHHHHHHhhccCCcccccHHHHhccccCCC-eEEEeCCCc
Q psy9396 68 DVWITNEIE----NK--K---PSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDG-LIALSGAHL 137 (1149)
Q Consensus 68 Ei~v~~~~~----~~--~---~~hlllLAkN~~Gy~nL~kL~S~~~~~~~~~~~p~i~~e~L~~~~~~~g-lIiis~~~~ 137 (1149)
|+.+.++.. .. . ..|.++.--.... .|.-..+.+... ...| +-++.|+..
T Consensus 84 E~~~~~~~~~~l~~~~~~~l~gs~~vl~e~~~~~-------------------~~~~~~~~i~~i-~~~g~~~vlaHp~r 143 (247)
T 2wje_A 84 EIYYTPDVLDKLEKKRIPTLNDSRYALIEFSMNT-------------------PYRDIHSALSKI-LMLGITPVIAHIER 143 (247)
T ss_dssp EEECCTHHHHHHHTTCSCCGGGSSEEEEECCTTC-------------------CHHHHHHHHHHH-HTTTCEEEETTGGG
T ss_pred EEeecHHHHHHHhcCCccEECCCeEEEEeCCCCc-------------------chHHHHHHHHHH-HHCCCcEEEEehhh
Confidence 999864310 00 0 1244432111100 011111222221 1234 445544321
Q ss_pred chHHHHHhcCChHHHHHHHHHHHHhCCCCeEEEEccCCC--cc----hHHHHHHHHHHHHhcCCCEEEecCccccCc
Q psy9396 138 GDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQ--PN----MNFQIQQFINIASNINLPIVATHPIQFLKK 208 (1149)
Q Consensus 138 g~i~~~l~~~~~~~a~~~~~~~~~~f~~~~ylEi~~~~~--~~----~~~~n~~l~~lA~~~~iplVatnDvhyl~~ 208 (1149)
-. .+ .... +.+..+++ .+..+|++..+. .. .......+.+++.+.|++++.++|+|....
T Consensus 144 ~~---~~-~~~~----~~l~~l~~---~G~~lEiN~~s~~~~~~~g~~~~~~~~~~~~~~~~gl~~~~GSDaH~~~~ 209 (247)
T 2wje_A 144 YD---AL-ENNE----KRVRELID---MGCYTQVNSSHVLKPKLFGERYKFMKKRAQYFLEQDLVHVIASDMHNLDG 209 (247)
T ss_dssp CG---GG-TTCH----HHHHHHHH---TTCEEEEEHHHHSCCCSSCCSCHHHHHHHHHHHHTTCCSEEECCBCCSSS
T ss_pred HH---HH-hhCH----HHHHHHHH---CCCEEEEecHhhHhcCCCCCcChHHHHHHHHHHHCCCeEEEEeCCCCCcc
Confidence 11 11 1111 22333332 356799986543 21 012346677888899999999999997653
No 15
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=98.19 E-value=5.6e-06 Score=79.66 Aligned_cols=91 Identities=13% Similarity=0.195 Sum_probs=73.6
Q ss_pred cccccccCCCCceEEEEEEEeeeEe---eecCC---cEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEe
Q psy9396 975 PIYLSELKPTYSCTVSGIITELKLK---TTYRG---KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLE 1048 (1149)
Q Consensus 975 ~~~i~~l~~~~~v~v~G~I~~vk~~---~TK~G---~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~ 1048 (1149)
.++|++|.++..+.+.|.|.++... .||+| +++.++|.|.||.+++++|++....+ ..+++|.+|.|+|.+-.
T Consensus 7 ~~~I~~L~~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG~I~~t~w~~~~~~~-~~l~~G~vv~i~g~~v~ 85 (115)
T 2k50_A 7 MDTISKLEEGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTGELRAVFWTENIKLL-KKFREGDVIRIKDVNIR 85 (115)
T ss_dssp CCCTTTCCTTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTEEEEEEEETTGGGGG-GTCCTTSEEEEEEEEEC
T ss_pred eEEHHHCCCCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCCeEEEEEeCchhhhh-hcCCCCCEEEEEeeEEc
Confidence 4578888887788999999988444 48887 57899999999999999999875544 57899999999999844
Q ss_pred eccCCceEEEEccccccH
Q psy9396 1049 DRFLKNIRINAEKIFDIN 1066 (1149)
Q Consensus 1049 ~~~~~~~~ii~~~i~~l~ 1066 (1149)
..++|.+++.+.+...++
T Consensus 86 ~~f~g~~qL~~~~~~~i~ 103 (115)
T 2k50_A 86 GGFGGRKEAHLMPRSTVE 103 (115)
T ss_dssp CCSSSSCEEEECTTCCEE
T ss_pred cccCCeEEEEECCCceEE
Confidence 336788999988776553
No 16
>1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel, RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP: c.6.3.2 PDB: 2czv_A*
Probab=98.14 E-value=4.7e-06 Score=89.03 Aligned_cols=151 Identities=11% Similarity=0.016 Sum_probs=88.1
Q ss_pred cccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCc-hhhHHHHHHHHHhCCCeeEeeeeeeeccccc----CCC
Q psy9396 5 FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSN-LFGIIKFYKSAYNKGIKPIIGCDVWITNEIE----NKK 79 (1149)
Q Consensus 5 fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~n-l~G~~~f~~~ak~~GIKpIiG~Ei~v~~~~~----~~~ 79 (1149)
|+|||+| +.|++++|+++ ++.+|||||+. +-+...+... + .++.+ .|+|+.+.+... ..+
T Consensus 9 ~~D~hvh-----------~~e~~~~A~~~-~~~i~itdH~~~~~~~~~~~~l-~-~~~~I-~GvEi~~~~~~~l~~~~~~ 73 (212)
T 1v77_A 9 FIEMDIR-----------DKEAYELAKEW-FDEVVVSIKFNEEVDKEKLREA-R-KEYGK-VAILLSNPKPSLVRDTVQK 73 (212)
T ss_dssp CEEEEEC-----------SHHHHHHHHHH-CSEEEEEEEESSCCCHHHHHHH-H-HHHSC-EEEEEESCCHHHHHHHHHH
T ss_pred EEEeCcC-----------HHHHHHHHHHH-hcEEEEeeccCcccchhhHHHH-H-hcCCe-eEEEEecCCHHHHHHHHHh
Confidence 9999999 99999999999 99999999974 2232222222 2 34555 999998854210 001
Q ss_pred C-ccEEEEEcccHHHHHHHHHHHHHHHhhccCCcccccHHHHhccccCCCeEEEeCCCcchHHHHHhcCChHHHHHHHHH
Q psy9396 80 P-SRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARR 158 (1149)
Q Consensus 80 ~-~hlllLAkN~~Gy~nL~kL~S~~~~~~~~~~~p~i~~e~L~~~~~~~glIiis~~~~g~i~~~l~~~~~~~a~~~~~~ 158 (1149)
. +.++.+--- +.+....+--+ .+-+++++..+..+.-+ +...++.+. +
T Consensus 74 ~r~di~~v~~~--------------------------~~~~n~~a~~~-~vDII~Hp~~~~~~~~~---~~~~a~~A~-e 122 (212)
T 1v77_A 74 FKSYLIYVESN--------------------------DLRVIRYSIEK-GVDAIISPWVNRKDPGI---DHVLAKLMV-K 122 (212)
T ss_dssp CSSSEEEEECS--------------------------CHHHHHHHHHT-TCSEEECTTTTSSSCSC---CHHHHHHHH-H
T ss_pred cCcEEEEEEeC--------------------------CHHHHHHHHhC-CCCEEecccccccCCCC---CHHHHHHHH-H
Confidence 1 344322111 11111111012 45567776554321100 112222221 1
Q ss_pred HHHhCCCCeEEEEccCCC---cc-h----HHHHHHHHHHHHhcCCCEEEecCccccC
Q psy9396 159 WSKIFPDNFYIEIQRFKQ---PN-M----NFQIQQFINIASNINLPIVATHPIQFLK 207 (1149)
Q Consensus 159 ~~~~f~~~~ylEi~~~~~---~~-~----~~~n~~l~~lA~~~~iplVatnDvhyl~ 207 (1149)
.+.++||+..+. +. . ......++++++++|+|+|.++|+|...
T Consensus 123 ------~gv~lEIn~s~~~~~~~~~R~~~~~~~~~il~l~k~~g~~ivisSDAh~~~ 173 (212)
T 1v77_A 123 ------KNVALGFSLRPLLYSNPYERANLLRFMMKAWKLVEKYKVRRFLTSSAQEKW 173 (212)
T ss_dssp ------HTCEEEEESHHHHHSCHHHHHHHHHHHHHHHHHHHHHTCCEEEECCCSSGG
T ss_pred ------CCeEEEEECcHHhcCCcchHHHHHHHHHHHHHHHHhcCCCEEEeCCCCChh
Confidence 368999998652 22 1 2344678999999999999999999643
No 17
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=97.75 E-value=5.8e-06 Score=77.35 Aligned_cols=56 Identities=20% Similarity=0.340 Sum_probs=50.2
Q ss_pred cccccCCccHHHHHHHHHHHh-cCCCCCHHHHHhhcccCCCCHHHHHHHHHcCCCCCcch
Q psy9396 834 GLGAIKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892 (1149)
Q Consensus 834 gl~~Ikgvg~~~~~~i~~~r~-~g~f~~~~df~~r~~~~~~~~~~le~Li~~Gafd~~~~ 892 (1149)
-|..|+|||+..|++|++.|+ +|+|.|++|| .++ ..++++.++.|+++||||+|+.
T Consensus 41 ~L~~ipGIG~~~A~~Il~~r~~~g~f~s~edL-~~v--~Gig~k~~~~l~~~g~ld~~~~ 97 (98)
T 2edu_A 41 DLRSLQRIGPKKAQLIVGWRELHGPFSQVEDL-ERV--EGITGKQMESFLKANILGLAAG 97 (98)
T ss_dssp HHHHSTTCCHHHHHHHHHHHHHHCCCSSGGGG-GGS--TTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCCHHHHHHHHHHHHhcCCcCCHHHH-HhC--CCCCHHHHHHHHHCcChhccCC
Confidence 378899999999999999998 6999999998 565 4599999999999999998864
No 18
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=97.39 E-value=0.00076 Score=63.86 Aligned_cols=83 Identities=14% Similarity=0.261 Sum_probs=69.1
Q ss_pred ccccccCCCC-ceEEEEEEEeeeEe-eecCC-c--EEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEE-EEEEee
Q psy9396 976 IYLSELKPTY-SCTVSGIITELKLK-TTYRG-K--ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVS-GKVLED 1049 (1149)
Q Consensus 976 ~~i~~l~~~~-~v~v~G~I~~vk~~-~TK~G-~--mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~-G~v~~~ 1049 (1149)
+.++||.++. .+.+.|.|.++..+ .||+| + ++-++|.|+||.+.+++|.+. +++|.+|.|+ |.++.
T Consensus 4 ~kI~dl~pg~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG~I~~tlW~~~-------l~~Gdvv~i~ng~v~~- 75 (106)
T 2k75_A 4 VKIRDVSLSTPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTARIRISSFGKQ-------LQDSDVVRIDNARVAQ- 75 (106)
T ss_dssp CCSTTCCTTCSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSCEEEEEEESSC-------CCTTEEEEEEEEEEEE-
T ss_pred EEHHHcCCCCceEEEEEEEEEccccccccCCCeeEEEEEEEEcCCCeEEEEEEcCc-------cCCCCEEEEEeeEEeE-
Confidence 5688888875 58889999988777 67888 3 678999999999999999876 9999999999 88865
Q ss_pred ccCCceEEEEccccccHH
Q psy9396 1050 RFLKNIRINAEKIFDINV 1067 (1149)
Q Consensus 1050 ~~~~~~~ii~~~i~~l~~ 1067 (1149)
++|.+++.+.+...++.
T Consensus 76 -~~g~~~L~v~~~~~I~~ 92 (106)
T 2k75_A 76 -FNGYLSLSVGDSSRIES 92 (106)
T ss_dssp -ETTEEEEEECTTSEEEE
T ss_pred -ECCEEEEEECCcEEEEE
Confidence 57889999987765543
No 19
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=97.37 E-value=0.0011 Score=64.18 Aligned_cols=84 Identities=20% Similarity=0.269 Sum_probs=67.7
Q ss_pred ccccccCCCC-ceEEEEEEEee---eEeeecCCc--EEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEE-EEEEe
Q psy9396 976 IYLSELKPTY-SCTVSGIITEL---KLKTTYRGK--ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVS-GKVLE 1048 (1149)
Q Consensus 976 ~~i~~l~~~~-~v~v~G~I~~v---k~~~TK~G~--mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~-G~v~~ 1048 (1149)
+.|++|.++. .+.+.|.|.++ +...||+|+ ..-++|.|.||.+++++|.+.- +.+++|.+|.|+ |+++.
T Consensus 3 ~~I~dL~~~~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG~I~~tlW~~~~----~~~~~G~vv~i~~g~v~~ 78 (119)
T 1o7i_A 3 EKVGNLKPNMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGRVKLTLWGKHA----GSIKEGQVVKIENAWTTA 78 (119)
T ss_dssp CCGGGCCTTCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEEEEEEEEGGGT----TCCCTTCEEEEEEEEEEE
T ss_pred EEHHHCcCCCCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCCEEEEEEECChh----hcCCCCCEEEEEeEEEEE
Confidence 4678888875 78899999988 555788884 6689999999999999998752 468999999999 98874
Q ss_pred eccCCceEEEEcccccc
Q psy9396 1049 DRFLKNIRINAEKIFDI 1065 (1149)
Q Consensus 1049 ~~~~~~~~ii~~~i~~l 1065 (1149)
++|.+++.+.+...+
T Consensus 79 --~~g~~qL~i~~~~~i 93 (119)
T 1o7i_A 79 --FKGQVQLNAGSKTKI 93 (119)
T ss_dssp --ETTEEEEEECTTCEE
T ss_pred --eCCEEEEEECCCEEE
Confidence 578899988874433
No 20
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=97.00 E-value=0.0029 Score=59.73 Aligned_cols=87 Identities=17% Similarity=0.251 Sum_probs=67.6
Q ss_pred ccccccCCCCceEEEEEEEeeeEe---eecCC---cEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEee
Q psy9396 976 IYLSELKPTYSCTVSGIITELKLK---TTYRG---KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLED 1049 (1149)
Q Consensus 976 ~~i~~l~~~~~v~v~G~I~~vk~~---~TK~G---~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~ 1049 (1149)
.+|.+|.++..+.|.|.|.++..+ .+|+| ++.-++|.|.||.+.+++|.+.-.. .+.+|.+|.|.|.++..
T Consensus 6 ~~I~dL~~~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG~IrvtlW~~~a~~---~l~~Gdvv~i~g~vk~~ 82 (105)
T 3dm3_A 6 YNIGELSPGMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETGSIRVTLWDNLTDI---DVGRGDYVRVRGYIREG 82 (105)
T ss_dssp ECGGGCCSSEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTEEEEEEEEGGGGGS---CCCTTCEEEEEEEEEEC
T ss_pred eEHHHCCCCCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECccccc---ccCCCCEEEEEEEEEEc
Confidence 578888887788999999987643 44566 3557999999999999999876543 68899999999999875
Q ss_pred ccCCceEEEEccccccH
Q psy9396 1050 RFLKNIRINAEKIFDIN 1066 (1149)
Q Consensus 1050 ~~~~~~~ii~~~i~~l~ 1066 (1149)
. .+++++.+.+-..++
T Consensus 83 ~-~g~~eL~~g~~~~i~ 98 (105)
T 3dm3_A 83 Y-YGGLECTANYVEILK 98 (105)
T ss_dssp T-TSSEEEEEEEEEEEE
T ss_pred c-CCCEEEEeCCceEEE
Confidence 3 457888877655543
No 21
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=96.94 E-value=0.0035 Score=60.03 Aligned_cols=70 Identities=23% Similarity=0.266 Sum_probs=58.2
Q ss_pred cccccccCCCC-ceEEEEEEEee---eEeeecCC--cEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEEE
Q psy9396 975 PIYLSELKPTY-SCTVSGIITEL---KLKTTYRG--KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSG 1044 (1149)
Q Consensus 975 ~~~i~~l~~~~-~v~v~G~I~~v---k~~~TK~G--~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G 1044 (1149)
.++|++|.++. ...|.|.|+.. |...+++| ++.-+.|-|++|+|.+++|++.-++|.+.|++|.++.|.+
T Consensus 4 ~~~Is~L~p~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G~I~at~~~~~~~~f~~~l~eG~vy~Is~ 79 (114)
T 1ynx_A 4 IFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSGEIRATAFNDFATKFNEILQEGKVYYVSK 79 (114)
T ss_dssp BCCGGGCCTTTCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEETTEEEEEEECHHHHHHHHHHSCSSSEEEEES
T ss_pred eEEHHHCCCCCCceEEEEEEEEeccceEEecCCCCceEEEEEEECCCCeEEEEECHHHHHHHHhhcccCcEEEECC
Confidence 36789998875 68888888865 55566665 5666889999999999999999999999999999998864
No 22
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=96.88 E-value=0.003 Score=58.74 Aligned_cols=85 Identities=24% Similarity=0.310 Sum_probs=62.4
Q ss_pred ccccccCCCCceEEEEEEEeeeEee---ecCC---cEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEee
Q psy9396 976 IYLSELKPTYSCTVSGIITELKLKT---TYRG---KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLED 1049 (1149)
Q Consensus 976 ~~i~~l~~~~~v~v~G~I~~vk~~~---TK~G---~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~ 1049 (1149)
.+|++|.++..+.+.|.|.++..++ +|+| ++.-+++.|+||++.+++|.+.-.. .+++|.+|.|.|++...
T Consensus 3 ~kI~dl~~g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG~I~~tlW~~~~~~---~i~~Gdvv~i~g~v~~~ 79 (97)
T 3e0e_A 3 YKISELMPNLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTGSIRGTLWNELADF---EVKKGDIAEVSGYVKQG 79 (97)
T ss_dssp ECGGGCCTTEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTEEEEEEEEGGGGGC---CCCTTCEEEEEEEEEEC
T ss_pred eEHHHCCCCCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECCcccc---ccCCCCEEEEEEEEEEc
Confidence 3678888877889999999886443 3356 3667999999999999999875432 58999999999999763
Q ss_pred ccCCceEEEEcccccc
Q psy9396 1050 RFLKNIRINAEKIFDI 1065 (1149)
Q Consensus 1050 ~~~~~~~ii~~~i~~l 1065 (1149)
.+.+++.+.+-..+
T Consensus 80 --~~~~el~~g~~~~i 93 (97)
T 3e0e_A 80 --YSGLEISVDNIGII 93 (97)
T ss_dssp ----CEEEEEEEEEEE
T ss_pred --CCeEEEEECCCcEE
Confidence 46778877665443
No 23
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=96.71 E-value=0.00094 Score=69.12 Aligned_cols=48 Identities=35% Similarity=0.488 Sum_probs=40.8
Q ss_pred cccccCCccHHHHHHHHHHHhcCCCCCHHHHHhhccc-----CCCCHHHHHHH
Q psy9396 834 GLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDK-----KYINRRIINSL 881 (1149)
Q Consensus 834 gl~~Ikgvg~~~~~~i~~~r~~g~f~~~~df~~r~~~-----~~~~~~~le~L 881 (1149)
-|..++|||+..|++|++.|+.|||+|++|+.+||.. +.|..+.++.|
T Consensus 133 eL~~LpGIG~k~A~~IIeyRe~G~F~s~eDL~~RV~GIg~~~~~Ig~r~le~l 185 (205)
T 2i5h_A 133 QLELLPGVGKKMMWAIIEERKKRPFESFEDIAQRVKGIQRPEKLIVSRIIYEI 185 (205)
T ss_dssp GGGGSTTCCHHHHHHHHHHHHHSCCCSHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHhcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHhcCCCCcchhHHHHHHHHHh
Confidence 5789999999999999999998999999999999863 11566667666
No 24
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=96.65 E-value=0.0047 Score=61.05 Aligned_cols=77 Identities=12% Similarity=0.147 Sum_probs=60.7
Q ss_pred ceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchHHHH---HHHhhccCCcEEEEEEEEEeeccCCceEEEEccc
Q psy9396 986 SCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYE---KNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062 (1149)
Q Consensus 986 ~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~~y~---~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~~~i 1062 (1149)
.+.++|+|.+++... ....++|+|.||.+++.+|.+.=. .-...+..|..|.|.|++.. +++..++.+..+
T Consensus 38 ~V~iVG~V~~~~~~~----~~~~~~ldD~TG~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G~v~~--f~g~~qi~~~~i 111 (136)
T 4gop_B 38 QLTFVAVVRNISRNA----TNVAYSVEDGTGQIEVRQWLDSSSDDSSKASEIRNNVYVRVLGTLKS--FQNRRSISSGHM 111 (136)
T ss_dssp EEEEEEEEEEEEECS----SEEEEEEECSSCEEEEEEECC--------CCSCCTTCEEEEEEEEEE--ETTEEEEEESEE
T ss_pred EEEEEEEEEEEEecC----CeEEEEEECCCCCEEEEEecccCCcccccccccCCCCEEEEEEEEEE--eCCEEEEEEEEE
Confidence 689999999987532 467899999999999999975322 12456889999999999975 578899999988
Q ss_pred cccHHH
Q psy9396 1063 FDINVA 1068 (1149)
Q Consensus 1063 ~~l~~~ 1068 (1149)
.++++.
T Consensus 112 r~v~d~ 117 (136)
T 4gop_B 112 RPVIDY 117 (136)
T ss_dssp EECSSH
T ss_pred EECCCc
Confidence 887654
No 25
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=96.64 E-value=0.0082 Score=57.01 Aligned_cols=84 Identities=11% Similarity=0.131 Sum_probs=66.3
Q ss_pred ccccccCCC-CceEEEEEEEeeeEeeecCC-cEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEE-EEEEeeccC
Q psy9396 976 IYLSELKPT-YSCTVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVS-GKVLEDRFL 1052 (1149)
Q Consensus 976 ~~i~~l~~~-~~v~v~G~I~~vk~~~TK~G-~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~-G~v~~~~~~ 1052 (1149)
..++||.++ ..+.+.|.|.++... ++| .+-.++|.|+||.+.+++|.+. ....+++|.+|.|+ |+++. ++
T Consensus 6 ~kI~dl~~~~~~v~v~~~V~~~~~~--~~~~~~~~~~l~DeTG~I~~t~W~~~---~~~~~~~G~~V~i~n~~v~~--~~ 78 (109)
T 2kbn_A 6 TKIVDIVENGQWANLKAKVIQLWEN--THESISQVGLLGDETGIIKFTIWKNA---ELPLLEQGESYLLRSVVVGE--YN 78 (109)
T ss_dssp CCTTTCCSTTCEEEEEEEEEEEEEC--CCSSEEEEEEEECTTCCEEEEEEGGG---CCCCCCTTCEEEEEEEEEEE--ET
T ss_pred eEHHHCCCCCCcEEEEEEEEEeEcC--CCCeEEEEEEEECCCCeEEEEEECcc---cccccCCCCEEEEEEEEEEE--EC
Confidence 457888774 478999999988773 345 4457999999999999999843 34578999999999 78865 57
Q ss_pred CceEEEEccccccH
Q psy9396 1053 KNIRINAEKIFDIN 1066 (1149)
Q Consensus 1053 ~~~~ii~~~i~~l~ 1066 (1149)
|.+++.+.+...++
T Consensus 79 G~~~L~v~~~~~I~ 92 (109)
T 2kbn_A 79 DRFQVQVNKNSSIE 92 (109)
T ss_dssp TEEEEEECSSSEEE
T ss_pred CEEEEEECCceEEE
Confidence 88999998776654
No 26
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=96.43 E-value=0.0078 Score=59.11 Aligned_cols=77 Identities=18% Similarity=0.253 Sum_probs=59.0
Q ss_pred ceEEEEEEEeeeEeeecCCcEEEEEEEeCCc-eEEEEEchHHHH--HHHhhccCCcEEEEEEEEEeeccCCceEEEEccc
Q psy9396 986 SCTVSGIITELKLKTTYRGKILIIVIDDNSN-SVEVIINNQLYE--KNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062 (1149)
Q Consensus 986 ~v~v~G~I~~vk~~~TK~G~mafltleD~tg-~ie~vvFp~~y~--~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~~~i 1062 (1149)
.+.++|+|.++.... ....++|+|.|| .+++.+|.+.=. .-...+..|..|.|.|++.. ++|..++.+..+
T Consensus 33 ~V~iVG~V~~~~~~~----~~~~~~ldD~TG~~I~~~~W~~~~~~~~~~~~~~~g~yVrV~G~l~~--f~g~~qi~~~~i 106 (132)
T 3kdf_D 33 QVTIVGIIRHAEKAP----TNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRS--FQNKKSLVAFKI 106 (132)
T ss_dssp EEEEEEEEEEEEECS----SEEEEEEECSSSSCEEEEEEC---------CCCCTTCEEEEEEEEEE--ETTEEEEEEEEE
T ss_pred EEEEEEEEEEEEEcC----CeEEEEEECCCCCEEEEEEEccCCCcccccccccCCCEEEEEEEEEe--ECCEEEEEEEEE
Confidence 689999999986532 467899999999 999999976421 12456889999999999985 578899999888
Q ss_pred cccHHH
Q psy9396 1063 FDINVA 1068 (1149)
Q Consensus 1063 ~~l~~~ 1068 (1149)
.++++.
T Consensus 107 r~v~d~ 112 (132)
T 3kdf_D 107 MPLEDM 112 (132)
T ss_dssp EECSST
T ss_pred EEcCCc
Confidence 777643
No 27
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=96.38 E-value=0.011 Score=59.94 Aligned_cols=76 Identities=17% Similarity=0.274 Sum_probs=60.7
Q ss_pred ceEEEEEEEeeeEeeecCCcEEEEEEEeCCc-eEEEEEchHH-HH--HHHhhccCCcEEEEEEEEEeeccCCceEEEEcc
Q psy9396 986 SCTVSGIITELKLKTTYRGKILIIVIDDNSN-SVEVIINNQL-YE--KNKNILKENELLIVSGKVLEDRFLKNIRINAEK 1061 (1149)
Q Consensus 986 ~v~v~G~I~~vk~~~TK~G~mafltleD~tg-~ie~vvFp~~-y~--~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~~~ 1061 (1149)
.|.|+|+|++++...| ..+.+++|.|| .+++++|-+. .. ....-+..|.++-|+|.+.. +++..++.+.+
T Consensus 49 ~V~IvGiVv~~~~~~~----~~~ytIDD~TG~~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G~v~~--fr~~rqI~~~~ 122 (159)
T 3kf6_A 49 WIQIVGYIAAIDIYEG----KHVLTVDDCSGMVLRVVFIIQDDFSMSKRAISMSPGNVVCVFGKINS--FRSEVELIAQS 122 (159)
T ss_dssp EEEEEEEEEEEEEETT----EEEEEEECSSSCEEEEEEEGGGCHHHHHHHTTCCTTCEEEEEEEEEC--SSSSCEEEEEE
T ss_pred EEEEEEEEEEEEEeCC----EEEEEEecCCCCeEEEEEEccCCCCcccccccCCCCCEEEEEEEEEe--eCCEEEEEEEE
Confidence 6789999999986543 57899999999 5999999554 22 23344788999999999975 57888999999
Q ss_pred ccccHH
Q psy9396 1062 IFDINV 1067 (1149)
Q Consensus 1062 i~~l~~ 1067 (1149)
+..+++
T Consensus 123 i~~v~d 128 (159)
T 3kf6_A 123 FEELRD 128 (159)
T ss_dssp EEEECS
T ss_pred EEECCC
Confidence 888764
No 28
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=95.48 E-value=0.023 Score=62.69 Aligned_cols=75 Identities=19% Similarity=0.268 Sum_probs=58.5
Q ss_pred ceEEEEEEEeeeEeeecCCcEEEEEEEeCCc-eEEEEEchHHHH--HHHhhccCCcEEEEEEEEEeeccCCceEEEEccc
Q psy9396 986 SCTVSGIITELKLKTTYRGKILIIVIDDNSN-SVEVIINNQLYE--KNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062 (1149)
Q Consensus 986 ~v~v~G~I~~vk~~~TK~G~mafltleD~tg-~ie~vvFp~~y~--~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~~~i 1062 (1149)
.|+++|+|.++... +...-++|+|.|| .|++.+|.+.=. .-...++.|.+|.|.|++.. +++..+|.+.+|
T Consensus 73 ~V~ivG~V~~i~~~----~~~~~~~L~D~TG~~I~~k~W~~~~~~~~~~~~~~~G~yVrV~G~v~~--f~g~~qi~i~~i 146 (270)
T 2pi2_A 73 QVTIVGIIRHAEKA----PTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRS--FQNKKSLVAFKI 146 (270)
T ss_dssp EEEEEEEEEEEEEC----SSEEEEEEECSSSSCEEEEEECC-------CCCCCTTCEEEEEEEEEE--ETTEEEEEEEEE
T ss_pred EEEEEEEEEEEEec----cceEEEEEECCCCCEEEEEEEcCcCcccchhhcCCCCCEEEEEEEEEe--cCCeeEEEEEEE
Confidence 68899999988543 2577899999999 899999964311 12356889999999999985 578899999888
Q ss_pred cccH
Q psy9396 1063 FDIN 1066 (1149)
Q Consensus 1063 ~~l~ 1066 (1149)
.+++
T Consensus 147 r~v~ 150 (270)
T 2pi2_A 147 MPLE 150 (270)
T ss_dssp EECS
T ss_pred EecC
Confidence 7765
No 29
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=95.16 E-value=0.1 Score=61.28 Aligned_cols=78 Identities=22% Similarity=0.296 Sum_probs=60.8
Q ss_pred CCceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchH-----HHHHHHhhccCCcEEEEEEEEEeeccC-CceEE
Q psy9396 984 TYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQ-----LYEKNKNILKENELLIVSGKVLEDRFL-KNIRI 1057 (1149)
Q Consensus 984 ~~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~-----~y~~~~~~l~~~~~v~v~G~v~~~~~~-~~~~i 1057 (1149)
+..|+|+|.|.++|.. |+++|+.|.|.+|.+.+++-++ .|+.. ..+..+.+|.|+|.|..+... +++.+
T Consensus 16 ~~~V~v~G~v~~~R~~----g~~~F~~lrD~~g~iQ~v~~~~~~~~~~~~~~-~~l~~~~~v~v~G~v~~~~~~~~~~el 90 (434)
T 1x54_A 16 GKKVRLAGWVYTNMRV----GKKIFLWIRDSTGIVQAVVAKNVVGEETFEKA-KKLGRESSVIVEGIVKADERAPGGAEV 90 (434)
T ss_dssp TCEEEEEEEEEEEEEE----TTEEEEEEEETTEEEEEEECHHHHCHHHHHHH-HTCCTTCEEEEEEEEEECTTSGGGEEE
T ss_pred CCEEEEEEEEEEEecC----CCeEEEEEEECCEEEEEEEECCcCCHHHHHHH-hcCCCCCEEEEEEEEEecCCCCccEEE
Confidence 3489999999988764 4599999999999999998653 35544 468889999999999986421 36788
Q ss_pred EEccccccH
Q psy9396 1058 NAEKIFDIN 1066 (1149)
Q Consensus 1058 i~~~i~~l~ 1066 (1149)
.++++.-+.
T Consensus 91 ~~~~~~vl~ 99 (434)
T 1x54_A 91 HVEKLEVIQ 99 (434)
T ss_dssp EEEEEEEEE
T ss_pred EEeEEEEee
Confidence 888775554
No 30
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=95.08 E-value=0.088 Score=61.75 Aligned_cols=79 Identities=19% Similarity=0.294 Sum_probs=61.7
Q ss_pred CCceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchH--HHHHHHhhccCCcEEEEEEEEEeeccC-CceEEEEc
Q psy9396 984 TYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQ--LYEKNKNILKENELLIVSGKVLEDRFL-KNIRINAE 1060 (1149)
Q Consensus 984 ~~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~--~y~~~~~~l~~~~~v~v~G~v~~~~~~-~~~~ii~~ 1060 (1149)
+..|+|+|.|.++|.. |+++|+.|.|.+|.+.+++-++ .|+.. ..+..+.+|.|+|.|..+... +++.+.++
T Consensus 16 ~~~V~v~Gwv~~~R~~----g~~~F~~lrD~~g~iQ~v~~~~~~~~~~~-~~l~~~~~v~v~G~v~~~~~~~~~~el~~~ 90 (429)
T 1wyd_A 16 GKEVIWAGWVHLLRDL----GGKKFIILRDKTGLGQVVVDKNSSAFGIS-QELTQESVIQVRGIVKADKRAPRGIELHAE 90 (429)
T ss_dssp TCEEEEEEEEEEEEEE----TTEEEEEEEETTEEEEEEECTTSTTHHHH-TTCCTTCEEEEEEEEEECSSSGGGEEEEEE
T ss_pred CCEEEEEEEEEEEecC----CCeEEEEEEECCeeEEEEEeCChHHHHHH-HhCCCCCEEEEEEEEEecCCCCccEEEEEe
Confidence 3489999999988764 4599999999999999998764 46555 568889999999999986421 36788888
Q ss_pred cccccHH
Q psy9396 1061 KIFDINV 1067 (1149)
Q Consensus 1061 ~i~~l~~ 1067 (1149)
++.-+..
T Consensus 91 ~~~vl~~ 97 (429)
T 1wyd_A 91 EITLLSK 97 (429)
T ss_dssp EEEEEEC
T ss_pred EEEEecc
Confidence 7755543
No 31
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=94.91 E-value=0.096 Score=61.57 Aligned_cols=87 Identities=24% Similarity=0.258 Sum_probs=64.8
Q ss_pred ccccccCC---CCceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchHH-----HHHHHhhccCCcEEEEEEEEE
Q psy9396 976 IYLSELKP---TYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQL-----YEKNKNILKENELLIVSGKVL 1047 (1149)
Q Consensus 976 ~~i~~l~~---~~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~~-----y~~~~~~l~~~~~v~v~G~v~ 1047 (1149)
..+.++.. +..|+|+|.|.++|.. |+++|+.|.|.+|.+.+++-++. |+.. ..+..+.+|.|+|.|.
T Consensus 5 ~~~~~l~~~~~g~~V~v~Gwv~~~R~~----g~~~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~-~~l~~~~~V~V~G~v~ 79 (438)
T 3nem_A 5 HYSSEITEELNGQKVKVAGWVWEVKDL----GGIKFLWIRDRDGIVQITAPKKKVDPELFKLI-PKLRSEDVVAVEGVVN 79 (438)
T ss_dssp CCGGGCCGGGTTCEEEEEEEEEEEEEE----TTEEEEEEEETTEEEEEEEETTTSCHHHHHHG-GGCCTTCEEEEEEEEE
T ss_pred EEHHHcchhcCCCEEEEEEEEEEEecC----CCeEEEEEEECCeeEEEEEeCCcCCHHHHHHH-hcCCCCCEEEEEEEEE
Confidence 34555543 3489999999988753 45999999999999999987653 5444 3588899999999998
Q ss_pred eecc-CCceEEEEccccccHH
Q psy9396 1048 EDRF-LKNIRINAEKIFDINV 1067 (1149)
Q Consensus 1048 ~~~~-~~~~~ii~~~i~~l~~ 1067 (1149)
.+.. .+++.+.++++.-+..
T Consensus 80 ~~~~~~~~~el~~~~i~vl~~ 100 (438)
T 3nem_A 80 FTPKAKLGFEILPEKIVVLNR 100 (438)
T ss_dssp ECTTSTTSEEEEEEEEEEEEC
T ss_pred eCCCCCCcEEEEEEEEEEEec
Confidence 7631 1567888877765543
No 32
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=94.67 E-value=0.13 Score=61.69 Aligned_cols=77 Identities=10% Similarity=0.246 Sum_probs=61.1
Q ss_pred CceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchHH-----HHHHHhhccCCcEEEEEEEEEeeccCCceEEEE
Q psy9396 985 YSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQL-----YEKNKNILKENELLIVSGKVLEDRFLKNIRINA 1059 (1149)
Q Consensus 985 ~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~~-----y~~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~ 1059 (1149)
..|+|+|.|.++|.. |+++|++|.|.+|.+.+++-++. |+.++ .+..|.+|.|+|.|.... .|.+.+.+
T Consensus 87 ~~V~v~GwV~~~R~~----Gk~~Fi~LrD~sg~iQvv~~~~~~~~~~~~~~~-~l~~gd~V~V~G~v~~t~-~gelel~~ 160 (529)
T 4ex5_A 87 LEVAIAGRMMLKRVM----GKASFATVQDGSGQIQFFVTPADVGAETYDAFK-KWDLGDIVAARGVLFRTN-KGELSVKC 160 (529)
T ss_dssp CEEEEEEEEEEEEEE----TTEEEEEEECSSCEEEEEECHHHHCHHHHHHHH-TCCTTCEEEEEEEEEECT-TSCEEEEE
T ss_pred cEEEEEEEEEeeecC----CCeEEEEEEeCCeeEEEEEECCcCCHHHHHHHh-cCCCCCEEEEEEEEEEcC-CCcEEEEE
Confidence 479999999988653 35999999999999999987653 54444 488899999999998753 57788888
Q ss_pred ccccccHH
Q psy9396 1060 EKIFDINV 1067 (1149)
Q Consensus 1060 ~~i~~l~~ 1067 (1149)
+++.-+..
T Consensus 161 ~~i~vLs~ 168 (529)
T 4ex5_A 161 TQLRLLAK 168 (529)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEec
Confidence 87765543
No 33
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=94.65 E-value=0.3 Score=46.16 Aligned_cols=79 Identities=13% Similarity=0.307 Sum_probs=57.3
Q ss_pred ceEEEEEEE-eeeEeeecCC--cEEEEEEE-------eCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeeccCC--
Q psy9396 986 SCTVSGIIT-ELKLKTTYRG--KILIIVID-------DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLK-- 1053 (1149)
Q Consensus 986 ~v~v~G~I~-~vk~~~TK~G--~mafltle-------D~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~~~-- 1053 (1149)
.|.+.|-+. +...+.|.+| .++-++|. |.+.-+++++|-+.-+.....+++|..|.|+|+++.+.+.+
T Consensus 13 ~v~LiGrL~~DPelR~t~~g~~~va~f~lAv~~~~~~~~t~fi~vv~wgk~AE~~~~yl~KG~~V~VeGrL~~r~y~~kd 92 (108)
T 3koj_A 13 SCILQATVVEAPQLRYAQDNQTPVAEMVVQFPGLSSKDAPARLKVVGWGAVAQELQDRCRLNDEVVLEGRLRINSLLKPD 92 (108)
T ss_dssp EEEEEEEEEEEEEEEECTTSSSEEEEEEEEECC-----CCEEEEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEC-----
T ss_pred eEEEEEEECCCCEEEEeCCCCEEEEEEEEEECCcccCCCcEEEEEEEEhHHHHHHHHhCCCCCEEEEEEEEEeeeEECCC
Confidence 677888776 4466678877 46644442 35668999999999999999999999999999999765432
Q ss_pred c-----eEEEEccccc
Q psy9396 1054 N-----IRINAEKIFD 1064 (1149)
Q Consensus 1054 ~-----~~ii~~~i~~ 1064 (1149)
+ ..++|++|.|
T Consensus 93 G~kr~~tEVva~~i~P 108 (108)
T 3koj_A 93 GNREKQTELTVTRVHH 108 (108)
T ss_dssp ---CCEEEEEEEEEEC
T ss_pred CCEEEEEEEEEEEEEC
Confidence 2 3577776653
No 34
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=94.62 E-value=0.2 Score=60.10 Aligned_cols=78 Identities=17% Similarity=0.261 Sum_probs=63.0
Q ss_pred CceEEEEEEEeeeEeeecCC-cEEEEEEEeCCceEEEEEchH------HHHHHHhhccCCcEEEEEEEEEeeccCCceEE
Q psy9396 985 YSCTVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQ------LYEKNKNILKENELLIVSGKVLEDRFLKNIRI 1057 (1149)
Q Consensus 985 ~~v~v~G~I~~vk~~~TK~G-~mafltleD~tg~ie~vvFp~------~y~~~~~~l~~~~~v~v~G~v~~~~~~~~~~i 1057 (1149)
..|+|+|.|.++|.. | +++|++|.|.+|.+.+++..+ .|+.+...+..|.+|.|+|.|.... .|++.+
T Consensus 56 ~~V~v~Grv~~~R~~----gkk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~-~ge~ei 130 (521)
T 3bju_A 56 ITLKVAGRIHAKRAS----GGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTK-KGELSI 130 (521)
T ss_dssp CCEEEEEEEEEEEES----SSSEEEEEEEETTEEEEEEEEGGGSSCHHHHHHHHHHCCTTCEEEEEEEEEECT-TCCEEE
T ss_pred cEEEEEEEEEEEecC----CCCcEEEEEEECCEEEEEEEECCccCCHHHHHHHHhcCCCCCEEEEEEEEEecC-CCCEEE
Confidence 479999999987653 4 599999999999999998653 4665556689999999999999864 577888
Q ss_pred EEccccccHH
Q psy9396 1058 NAEKIFDINV 1067 (1149)
Q Consensus 1058 i~~~i~~l~~ 1067 (1149)
.|+++.-+..
T Consensus 131 ~~~~i~~l~~ 140 (521)
T 3bju_A 131 IPYEITLLSP 140 (521)
T ss_dssp EEEEEEEEEC
T ss_pred EEeEEEEeec
Confidence 8887766543
No 35
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=94.59 E-value=0.11 Score=56.07 Aligned_cols=70 Identities=19% Similarity=0.264 Sum_probs=57.6
Q ss_pred cccccccCCCC-ceEEEEEEEee---eEeeecCC--cEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEEE
Q psy9396 975 PIYLSELKPTY-SCTVSGIITEL---KLKTTYRG--KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSG 1044 (1149)
Q Consensus 975 ~~~i~~l~~~~-~v~v~G~I~~v---k~~~TK~G--~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G 1044 (1149)
.++|++|.+.. ...|.|.|++. |....++| ++.-+.|-|++|+|.+++|.+...+|.+.|++|.++.|.+
T Consensus 8 ~~~I~~L~p~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G~I~at~~~~~~~~~~~~l~~G~vy~i~~ 83 (246)
T 1jmc_A 8 VVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSK 83 (246)
T ss_dssp BCCGGGCCTTCCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSCEEEEEEEHHHHHHHGGGCCTTCEEEEEC
T ss_pred eEEHHHCCCCCCceEEEEEEEEecccceeeCCCCCceEEEEEEECCCCeEEEEEChHHHHHhhhhcccCCEEEECC
Confidence 46789998865 78888888876 44444444 5666889999999999999999999999999999998876
No 36
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=94.43 E-value=0.16 Score=60.57 Aligned_cols=77 Identities=17% Similarity=0.257 Sum_probs=61.2
Q ss_pred CceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchH-----HHHHHHhhccCCcEEEEEEEEEeeccCCceEEEE
Q psy9396 985 YSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQ-----LYEKNKNILKENELLIVSGKVLEDRFLKNIRINA 1059 (1149)
Q Consensus 985 ~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~-----~y~~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~ 1059 (1149)
..|+|+|.|.++|.. |+++|++|.|.+|.+.+++-++ .|+.+ ..+..|.+|.|+|.|..+. .+.+.+.|
T Consensus 57 ~~V~v~Gwv~~~R~~----gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~-~~l~~g~~v~V~G~v~~~~-~ge~ei~~ 130 (493)
T 3a74_A 57 IEVAVAGRIMTKRGM----GKAGFAHIQDVTGQIQIYVRQDDVGEQQYELF-KISDLGDIVGVRGTMFKTK-VGELSIKV 130 (493)
T ss_dssp CEEEEEEEEEEEEEE----TTEEEEEEEETTEEEEEEEEHHHHHHHHHHHH-HHCCTTCEEEEEEEEEECT-TCCEEEEE
T ss_pred CEEEEEEEEEEEecC----CCcEEEEEEECCEeEEEEEECCcCCHHHHHHH-hcCCCCCEEEEEEEEEeCC-CCcEEEEE
Confidence 479999999987764 3589999999999999998654 34444 4588899999999999864 57788888
Q ss_pred ccccccHH
Q psy9396 1060 EKIFDINV 1067 (1149)
Q Consensus 1060 ~~i~~l~~ 1067 (1149)
+++.-+..
T Consensus 131 ~~i~vl~~ 138 (493)
T 3a74_A 131 SSYEFLTK 138 (493)
T ss_dssp EEEEEEEC
T ss_pred EEEEEccc
Confidence 87765543
No 37
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=94.37 E-value=0.14 Score=62.19 Aligned_cols=78 Identities=9% Similarity=0.163 Sum_probs=61.0
Q ss_pred CCceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchH--HHHHHHhhccCCcEEEEEEEEEeec------cCCce
Q psy9396 984 TYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQ--LYEKNKNILKENELLIVSGKVLEDR------FLKNI 1055 (1149)
Q Consensus 984 ~~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~--~y~~~~~~l~~~~~v~v~G~v~~~~------~~~~~ 1055 (1149)
+..|+++|+|.++|.. |+++|+.|.|.+|.+.+++-++ .|+.. ..+..+.+|.|+|.|..+. ..|.+
T Consensus 16 g~~V~l~GwV~~~R~~----G~~~Fi~LrD~~g~iQvv~~~~~~~~~~~-~~l~~e~~V~V~G~v~~~~~~~~~~~~ge~ 90 (580)
T 1l0w_A 16 GEEVVLEGWVNRRRDL----GGLIFLDLRDREGLVQLVAHPASPAYATA-ERVRPEWVVRAKGLVRLRPEPNPRLATGRV 90 (580)
T ss_dssp TCEEEEEEEEEEEEEC----SSCEEEEEEETTEEEEEEECTTSTTHHHH-TTCCTTCEEEEEEEEEECSSCCTTSTTTTE
T ss_pred CCEEEEEEEEEEEecC----CCeEEEEEEECCeeEEEEEeCChhHHHHH-hcCCCCcEEEEEEEEEcCCCcCccCCCccE
Confidence 3489999999988764 4589999999999999998765 45544 4588899999999998752 24668
Q ss_pred EEEEccccccH
Q psy9396 1056 RINAEKIFDIN 1066 (1149)
Q Consensus 1056 ~ii~~~i~~l~ 1066 (1149)
.+.|+++.-+.
T Consensus 91 Ei~~~~i~vl~ 101 (580)
T 1l0w_A 91 EVELSALEVLA 101 (580)
T ss_dssp EEEEEEEEEEE
T ss_pred EEEEeEEEEec
Confidence 88888775554
No 38
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=94.34 E-value=0.2 Score=60.19 Aligned_cols=86 Identities=12% Similarity=0.238 Sum_probs=63.2
Q ss_pred ccccccCC---CCceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEch-----HHHHHHHhhccCCcEEEEEEEEE
Q psy9396 976 IYLSELKP---TYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINN-----QLYEKNKNILKENELLIVSGKVL 1047 (1149)
Q Consensus 976 ~~i~~l~~---~~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp-----~~y~~~~~~l~~~~~v~v~G~v~ 1047 (1149)
+.+.++.. +..|+|.|.|.++|.. |+++|+.|.|.+|.+.+++.+ +.+-++...|..+.+|.|+|.|.
T Consensus 51 ~~i~~l~~~~~g~~V~v~Gwv~~~R~~----gkl~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~ 126 (548)
T 3i7f_A 51 TEIEELVPAMAEKTVTIRARVQAVRGK----GNMVFLFLRKGIYTCQALVMKSETISKEFVQFCQKISAESICDITGIVK 126 (548)
T ss_dssp CCGGGCSGGGTTCEEEEEEEEEEEEEC----SSEEEEEEEETTEEEEEEEECSSSSCHHHHHHHHTCCTTEEEEEEEEEE
T ss_pred EEhhhcchhcCCCEEEEEEEEEEEecC----CCeEEEEEEECCeeEEEEEECCCccCHHHHHHHhCCCCCCEEEEEEEEE
Confidence 45566643 3489999999887653 469999999999999999975 23334455688999999999999
Q ss_pred eecc------CCceEEEEcccccc
Q psy9396 1048 EDRF------LKNIRINAEKIFDI 1065 (1149)
Q Consensus 1048 ~~~~------~~~~~ii~~~i~~l 1065 (1149)
.... .+.+.+.++++.-+
T Consensus 127 ~~~~~~~~~~~~~~El~~~~i~vl 150 (548)
T 3i7f_A 127 AVEKPIEKATQQDVEIHVTSIAVV 150 (548)
T ss_dssp ECSSCCTTSSSCSEEEEEEEEEEE
T ss_pred eCCcccccCCCCcEEEEEeEEEEE
Confidence 8532 25577777666443
No 39
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=93.94 E-value=0.23 Score=48.75 Aligned_cols=81 Identities=14% Similarity=0.237 Sum_probs=57.8
Q ss_pred ceEEEEEEEe-eeEeeecCC-cEEEEEEE-------------eCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeec
Q psy9396 986 SCTVSGIITE-LKLKTTYRG-KILIIVID-------------DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDR 1050 (1149)
Q Consensus 986 ~v~v~G~I~~-vk~~~TK~G-~mafltle-------------D~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~ 1050 (1149)
.+.+.|.|.. ...+.|.+| .++-++|. |.+..+.|++|.+.-+.....|++|..|.|+|+++.+.
T Consensus 4 ~V~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~L~~~~ 83 (134)
T 2vw9_A 4 KVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLTYES 83 (134)
T ss_dssp CEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEEE
T ss_pred EEEEEEEECCCCEEEECCCCCEEEEEEEEEeCCeECCCCCCccccEEEEEEEEcHHHHHHHHhCCCCCEEEEEEEEEeee
Confidence 4677777774 455567777 56643331 13447999999998888888899999999999999764
Q ss_pred cC---Cc----eEEEEccccccH
Q psy9396 1051 FL---KN----IRINAEKIFDIN 1066 (1149)
Q Consensus 1051 ~~---~~----~~ii~~~i~~l~ 1066 (1149)
+. |. ..|+|++|..|+
T Consensus 84 ~~dkdG~~r~~~ev~a~~i~~l~ 106 (134)
T 2vw9_A 84 WMDQTGKKNSRHTITADSLQFMD 106 (134)
T ss_dssp EECTTSCEEEEEEEEEEEEEECC
T ss_pred EECCCCCEEEEEEEEEEEEEEcc
Confidence 32 32 347777776664
No 40
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=93.83 E-value=0.24 Score=60.34 Aligned_cols=78 Identities=19% Similarity=0.250 Sum_probs=60.8
Q ss_pred CCceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchH---HHHHHHhhccCCcEEEEEEEEEeec--------cC
Q psy9396 984 TYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQ---LYEKNKNILKENELLIVSGKVLEDR--------FL 1052 (1149)
Q Consensus 984 ~~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~---~y~~~~~~l~~~~~v~v~G~v~~~~--------~~ 1052 (1149)
+..|+|+|+|.++|.. |+++|+.|.|.+|.+.+|+-++ .|+.. ..+..+.+|.|+|+|..+. ..
T Consensus 15 g~~V~l~GwV~~~R~~----G~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~-~~l~~e~~V~V~G~v~~~~~~~~n~~~~~ 89 (585)
T 1c0a_A 15 GQQVTLCGWVNRRRDL----GSLIFIDMRDREGIVQVFFDPDRADALKLA-SELRNEFCIQVTGTVRARDEKNINRDMAT 89 (585)
T ss_dssp TCEEEEEEEEEEEEEC----SSCEEEEEEETTEEEEEEECGGGHHHHHHH-TTCCTTCEEEEEEEEEECCTTTCCTTSTT
T ss_pred CCEEEEEEEEEEEecC----CCcEEEEEEECCeeEEEEEeCCchHHHHHH-hcCCCCCEEEEEeEEEccCcccccccCCC
Confidence 3489999999988764 4599999999999999998764 35443 4688899999999998752 23
Q ss_pred CceEEEEccccccH
Q psy9396 1053 KNIRINAEKIFDIN 1066 (1149)
Q Consensus 1053 ~~~~ii~~~i~~l~ 1066 (1149)
|.+.+.|+++.-+.
T Consensus 90 geiEl~~~~i~vl~ 103 (585)
T 1c0a_A 90 GEIEVLASSLTIIN 103 (585)
T ss_dssp TTEEEEEEEEEEEE
T ss_pred ccEEEEEeEEEEEe
Confidence 66888888776554
No 41
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=93.73 E-value=0.35 Score=46.15 Aligned_cols=82 Identities=15% Similarity=0.198 Sum_probs=60.6
Q ss_pred ceEEEEEEEe-eeEeeecCC-cEEEEEEEe-----------CCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeeccC
Q psy9396 986 SCTVSGIITE-LKLKTTYRG-KILIIVIDD-----------NSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFL 1052 (1149)
Q Consensus 986 ~v~v~G~I~~-vk~~~TK~G-~mafltleD-----------~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~~ 1052 (1149)
.+.+.|.|.. ...+.|.+| .++-++|.- .+..+.|++|.+.-+.....|++|..|.|+|+++.+.+.
T Consensus 7 ~v~l~G~l~~dpe~r~t~~G~~v~~f~la~~~~~~~~~g~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~l~~~~~~ 86 (116)
T 3vdy_A 7 QVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTRSYE 86 (116)
T ss_dssp CEEEEEEESSCCEEEECTTSCEEEEEEEEEECSSCCSSSCCCEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEEEEC
T ss_pred EEEEEEEEccCcEEEECCCCCEEEEEEEEEeccccCCCCccccEEEEEEEECHHHHHHHHhCCCCCEEEEEEEEEeeEEE
Confidence 6788888875 566678888 677444421 234699999999888888889999999999999976433
Q ss_pred ---C----ceEEEEccccccHH
Q psy9396 1053 ---K----NIRINAEKIFDINV 1067 (1149)
Q Consensus 1053 ---~----~~~ii~~~i~~l~~ 1067 (1149)
| ...++|++|.-|+.
T Consensus 87 d~dG~~~~~~ev~a~~i~~l~~ 108 (116)
T 3vdy_A 87 NEEGVNVYVTEVLADTVRFMDP 108 (116)
T ss_dssp ----CCEEEEEEEEEEEEECC-
T ss_pred CCCCCEEEEEEEEEEEEEEccC
Confidence 3 24688888877753
No 42
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=93.72 E-value=0.21 Score=59.69 Aligned_cols=78 Identities=10% Similarity=0.290 Sum_probs=61.5
Q ss_pred CceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchH-----HHHHHHhhccCCcEEEEEEEEEeeccCCceEEEE
Q psy9396 985 YSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQ-----LYEKNKNILKENELLIVSGKVLEDRFLKNIRINA 1059 (1149)
Q Consensus 985 ~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~-----~y~~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~ 1059 (1149)
..|+|+|.|.++|.. |+++|++|.|.+|.+.+++-++ .|++.-..+..|.+|.|+|.|..+. .+.+.+.|
T Consensus 65 ~~V~v~Gwv~~~R~~----gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~-~ge~ei~~ 139 (504)
T 1e1o_A 65 IEVSVAGRMMTRRIM----GKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQ-TGELSIHC 139 (504)
T ss_dssp CEEEEEEEEEEEEEE----TTEEEEEEEETTEEEEEEEETTTSSTTHHHHTGGGCCTTCEEEEEEEEEECT-TCCEEEEE
T ss_pred CEEEEEEEEEEEecC----CCcEEEEEEECCeeEEEEEECCcCCHHHHHHHHhcCCCCCEEEEEEEEEecC-CceEEEEE
Confidence 479999999987764 3589999999999999998654 4552235688899999999999864 57788888
Q ss_pred ccccccHH
Q psy9396 1060 EKIFDINV 1067 (1149)
Q Consensus 1060 ~~i~~l~~ 1067 (1149)
+++.-+..
T Consensus 140 ~~i~vl~~ 147 (504)
T 1e1o_A 140 TELRLLTK 147 (504)
T ss_dssp EEEEEEEC
T ss_pred EEEEEecc
Confidence 87765543
No 43
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=93.42 E-value=0.32 Score=45.50 Aligned_cols=81 Identities=16% Similarity=0.175 Sum_probs=58.1
Q ss_pred ceEEEEEEEe-eeEeeecCC-cEEEEEE-----EeCCce-------EEEEEchHHHHHHHhhccCCcEEEEEEEEEeec-
Q psy9396 986 SCTVSGIITE-LKLKTTYRG-KILIIVI-----DDNSNS-------VEVIINNQLYEKNKNILKENELLIVSGKVLEDR- 1050 (1149)
Q Consensus 986 ~v~v~G~I~~-vk~~~TK~G-~mafltl-----eD~tg~-------ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~- 1050 (1149)
.+.+.|.+.. ...+.|.+| .++-++| .++++. +.+++|-+.-+.....+++|..|.|+|+++.+.
T Consensus 4 ~v~L~G~l~~dpelR~t~~G~~v~~f~lA~~~~~~~~~~~r~~~~~~~vv~~g~~Ae~~~~~l~KG~~V~V~G~L~~~~~ 83 (104)
T 1txy_A 4 RLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFISCHKA 83 (104)
T ss_dssp EEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSTTHHHHTTCCTTCEEEEEEEEEC---
T ss_pred EEEEEEEECCCceEEECCCCCEEEEEEEEEeCccccCCceeceeEEEEEEEEhHHHHHHHhhCCCCCEEEEEEEEEeccC
Confidence 4677887774 466678888 6664444 345677 999999998888888899999999999999752
Q ss_pred cCC--ceEEEEccccccH
Q psy9396 1051 FLK--NIRINAEKIFDIN 1066 (1149)
Q Consensus 1051 ~~~--~~~ii~~~i~~l~ 1066 (1149)
.+| .+.++++++..++
T Consensus 84 ~~G~~r~~v~~~~i~~l~ 101 (104)
T 1txy_A 84 KNGLSKMVLHAEQIELID 101 (104)
T ss_dssp -----CCEEEEEEEEEC-
T ss_pred CCCCEEEEEEEEEEEECc
Confidence 122 2567777776653
No 44
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=93.33 E-value=0.26 Score=57.72 Aligned_cols=73 Identities=19% Similarity=0.260 Sum_probs=57.9
Q ss_pred CCceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchHHHHHHHhhcc-CCcEEEEEEEEEeecc-CCceEEEEcc
Q psy9396 984 TYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILK-ENELLIVSGKVLEDRF-LKNIRINAEK 1061 (1149)
Q Consensus 984 ~~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~~y~~~~~~l~-~~~~v~v~G~v~~~~~-~~~~~ii~~~ 1061 (1149)
+..|+|+|.|.++|.. |+++|+.|.|.+|.+.+++-+ ..+. .+.+|.|+|.|..+.. .+++.+.+++
T Consensus 13 ~~~V~v~Gwv~~~R~~----g~~~F~~lrD~~g~iQ~v~~~-------~~l~~~~~~v~v~G~v~~~~~~~~~~el~~~~ 81 (422)
T 1n9w_A 13 GQEVELLGFLHWRRDL----GRIQFLLLRDRSGVVQVVTGG-------LKLPLPESALRVRGLVVENAKAPGGLEVQAKE 81 (422)
T ss_dssp TSEEEEEEEEEEEEEC----SSEEEEEEEETTEEEEEEEES-------CCCCCTTCEEEEEEEEEECTTSTTSEEEEEEE
T ss_pred CCEEEEEEEEEEEecC----CCeEEEEEEECCEEEEEEEEc-------cccCCCCCEEEEEEEEEecCCCCccEEEEEeE
Confidence 3489999999987764 459999999999999998765 5688 8999999999998642 1367888877
Q ss_pred ccccHH
Q psy9396 1062 IFDINV 1067 (1149)
Q Consensus 1062 i~~l~~ 1067 (1149)
+.-+..
T Consensus 82 ~~vl~~ 87 (422)
T 1n9w_A 82 VEVLSP 87 (422)
T ss_dssp EEEEEC
T ss_pred EEEecc
Confidence 755543
No 45
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=93.31 E-value=0.054 Score=50.20 Aligned_cols=44 Identities=14% Similarity=0.062 Sum_probs=37.6
Q ss_pred cccccCCccHHHHHHHHHHHhcCCCCCHHHHHhhcccCCCCHHHHHHHHH
Q psy9396 834 GLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLIN 883 (1149)
Q Consensus 834 gl~~Ikgvg~~~~~~i~~~r~~g~f~~~~df~~r~~~~~~~~~~le~Li~ 883 (1149)
=|..|+|||+..|++|++ +|||+|++|+.+- ..++.+.++.|-.
T Consensus 27 eL~~lpGIG~~~A~~IV~---~GpF~s~edL~~V---~Gig~~~~e~l~~ 70 (97)
T 3arc_U 27 AFIQYRGLYPTLAKLIVK---NAPYESVEDVLNI---PGLTERQKQILRE 70 (97)
T ss_dssp GGGGSTTCTTHHHHHHHH---HCCCSSGGGGGGC---TTCCHHHHHHHHH
T ss_pred HHhHCCCCCHHHHHHHHH---cCCCCCHHHHHhc---cCCCHHHHHHHHH
Confidence 478899999999999999 5799999999754 5688888888754
No 46
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=93.13 E-value=0.53 Score=44.96 Aligned_cols=80 Identities=13% Similarity=0.114 Sum_probs=56.2
Q ss_pred ceEEEEEEEee-eEeeecCC-cEEEEEEEeC-----Cce-------EEEEEchHHHHHHHhhccCCcEEEEEEEEEeecc
Q psy9396 986 SCTVSGIITEL-KLKTTYRG-KILIIVIDDN-----SNS-------VEVIINNQLYEKNKNILKENELLIVSGKVLEDRF 1051 (1149)
Q Consensus 986 ~v~v~G~I~~v-k~~~TK~G-~mafltleD~-----tg~-------ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~ 1051 (1149)
++.+.|.++.- ..+.|.+| ..+-++|.-. .|. ++|++|-+.-+.. ..+.+|..|.|+|+++.+..
T Consensus 3 kviL~GrL~~dPelRyTpsG~~V~~f~LA~~~~~~~~g~~r~~~~~i~vv~~Gk~AE~~-~~l~kGs~V~VeGrL~trs~ 81 (115)
T 3fhw_A 3 TLELSARVLECGAMRHTPAGLPALELLLVHESEVVEAGHPRRVELTISAVALGDLALLL-ADTPLGTEMQVQGFLAPARK 81 (115)
T ss_dssp EEEEEEEEEEECCCEECTTSCEEEEEEEEEEEECCCCC--CEEEEEEEEEEETHHHHHH-TTCCTTCEEEEEEEEEESST
T ss_pred EEEEEEEECcCcceEECCCCCEEEEEEEEEcceeecCCCeeeeeEEEEEEEEhHHHHhh-hccCCCCEEEEEEEEEECCC
Confidence 46677777644 44567788 6665554432 222 8899999988877 78999999999999998643
Q ss_pred CC-ceEEEEccccccH
Q psy9396 1052 LK-NIRINAEKIFDIN 1066 (1149)
Q Consensus 1052 ~~-~~~ii~~~i~~l~ 1066 (1149)
++ .+.+.|++|..++
T Consensus 82 ~G~kl~l~a~~Ie~l~ 97 (115)
T 3fhw_A 82 DSVKVKLHLQQARRIA 97 (115)
T ss_dssp TCSSEEEEEEEEEECC
T ss_pred CCCEEEEEEEEEEEcC
Confidence 33 3567777776653
No 47
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=93.03 E-value=0.44 Score=47.88 Aligned_cols=83 Identities=16% Similarity=0.233 Sum_probs=59.4
Q ss_pred CceEEEEEEEe-eeEeeecCC-cEEEEEEE-eC------------CceEEEEEchHHHHHHHhhccCCcEEEEEEEEEee
Q psy9396 985 YSCTVSGIITE-LKLKTTYRG-KILIIVID-DN------------SNSVEVIINNQLYEKNKNILKENELLIVSGKVLED 1049 (1149)
Q Consensus 985 ~~v~v~G~I~~-vk~~~TK~G-~mafltle-D~------------tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~ 1049 (1149)
..+.+.|.|.. ...+.|.+| .++-++|. +. +..+.|++|.+.-+.....|++|..|.|+|+++.+
T Consensus 17 N~V~LiGrL~~DPelr~t~~G~~va~f~lAv~~r~~~~~~Ge~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~VeGrL~~~ 96 (153)
T 1z9f_A 17 NKIILIGRLVRDPEERYTLSGTPVTTFTIAVDRVPRKNAPDDAQTTDFFRIVTFGRLAEFARTYLTKGRLVLVEGEMRMR 96 (153)
T ss_dssp CCEEEEEEESSCCEEEECC--CEEEEEEEEEEC-----------CEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEE
T ss_pred eEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCccccCCCCEeeeEEEEEEEECHHHHHHHhhCCCCCEEEEEEEEEec
Confidence 37888998885 566678888 67744442 11 44689999999888899999999999999999986
Q ss_pred ccC---C----ceEEEEccccccHH
Q psy9396 1050 RFL---K----NIRINAEKIFDINV 1067 (1149)
Q Consensus 1050 ~~~---~----~~~ii~~~i~~l~~ 1067 (1149)
.+. | ...|+|++|.-|..
T Consensus 97 ~~~dkdG~~r~~~eV~a~~i~~l~~ 121 (153)
T 1z9f_A 97 RWETPTGEKRVSPEVVANVVRFMDR 121 (153)
T ss_dssp C-------CCCEEEEEEEEEEECC-
T ss_pred eEECCCCCEEEEEEEEEEEEEEccC
Confidence 543 2 24688888877753
No 48
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=92.80 E-value=0.094 Score=50.99 Aligned_cols=43 Identities=16% Similarity=0.080 Sum_probs=35.7
Q ss_pred cccccCCccHHHHHHHHHHHhcCCCCCHHHHHhhcccCCCCHHHHHHHH
Q psy9396 834 GLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLI 882 (1149)
Q Consensus 834 gl~~Ikgvg~~~~~~i~~~r~~g~f~~~~df~~r~~~~~~~~~~le~Li 882 (1149)
-|..++|+|+..|++|+ ++|||+|++|+.+- +.|+.++.+.|-
T Consensus 64 eL~~LpGiGp~~A~~II---~~GpF~svedL~~V---~GIg~k~~e~l~ 106 (134)
T 1s5l_U 64 AFIQYRGLYPTLAKLIV---KNAPYESVEDVLNI---PGLTERQKQILR 106 (134)
T ss_dssp GGGGSTTCTHHHHHHHH---HTCCCSSGGGGGGC---TTCCHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHH---HcCCCCCHHHHHhC---CCCCHHHHHHHH
Confidence 47889999999999999 48999999999754 568877766653
No 49
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=92.77 E-value=0.59 Score=48.89 Aligned_cols=79 Identities=16% Similarity=0.208 Sum_probs=57.8
Q ss_pred ceEEEEEEEe-eeEeeecCC-cEEEEEEEe---------------CCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEe
Q psy9396 986 SCTVSGIITE-LKLKTTYRG-KILIIVIDD---------------NSNSVEVIINNQLYEKNKNILKENELLIVSGKVLE 1048 (1149)
Q Consensus 986 ~v~v~G~I~~-vk~~~TK~G-~mafltleD---------------~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~ 1048 (1149)
.|++.|.|.. ...+.|++| .++-++|.- .+.-++|++|-+.-+.+...|+++..|+|+|+++.
T Consensus 6 ~V~LiGrL~~DPElR~T~~G~~Va~FsLAvn~R~~d~~~Ge~~d~~T~wi~VvawgklAE~v~~~L~KG~~V~VeGrL~~ 85 (199)
T 3eiv_A 6 VITVVGNLVDDPELRFTPSGAAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWRQAAENVAESLQRGMRVIVQGRLKQ 85 (199)
T ss_dssp EEEEEEEESSCCEEEECTTCCEEEEEEEEECC-----------CCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEEEEEE
T ss_pred EEEEEEEECCCCeEEECCCCCEEEEEEEEEcCcccccCCCcEecCccEEEEEEEEhHHHHHHHHhcCCCCEEEEEEEEEe
Confidence 6788888874 566778888 677444321 35568999999998888999999999999999997
Q ss_pred eccCC-------ceEEEEccccc
Q psy9396 1049 DRFLK-------NIRINAEKIFD 1064 (1149)
Q Consensus 1049 ~~~~~-------~~~ii~~~i~~ 1064 (1149)
+.+.+ .+.|+|++|-.
T Consensus 86 rswedkdG~kr~~~eVvA~~Ig~ 108 (199)
T 3eiv_A 86 RSYEDREGVKRTVYELDVDEVGA 108 (199)
T ss_dssp EC--------CCEEEEEEEEEEE
T ss_pred eEEECCCCCEEEEEEEEEEEEec
Confidence 65432 24577777643
No 50
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=92.52 E-value=0.52 Score=60.55 Aligned_cols=91 Identities=21% Similarity=0.273 Sum_probs=73.5
Q ss_pred ccccccCCCC-ceEEEEEEEeeeEeeecCC-cEEEEEEEeCCceEEEEEchHHH--HHHHhhccCCcEEEEEEEEEeecc
Q psy9396 976 IYLSELKPTY-SCTVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLY--EKNKNILKENELLIVSGKVLEDRF 1051 (1149)
Q Consensus 976 ~~i~~l~~~~-~v~v~G~I~~vk~~~TK~G-~mafltleD~tg~ie~vvFp~~y--~~~~~~l~~~~~v~v~G~v~~~~~ 1051 (1149)
+++.++.+.. .|+|-|.|-.+..+.+|+| .+..+.+.|.|+++-+-.|.+.- ......+++|..|.|+|.++.|.+
T Consensus 8 ~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~td~~~~~~~k~f~~~~~~~~~~~~~~~g~~~~~~g~~~~d~~ 87 (1041)
T 3f2b_A 8 RRLETIVEEERRVVVQGYVFDAEVSELKSGRTLLTMKITDYTNSILVKMFSRDKEDAELMSGVKKGMWVKVRGSVQNDTF 87 (1041)
T ss_dssp BCGGGCCSCEEEEEEEEEEEEEEEEECTTSCEEEEEEEECSSCEEEEEEECSSHHHHHHHHTCCTTCEEEEEEEEEEETT
T ss_pred ccHHHhhcccceEEEEEEEEEEEEEEccCCCEEEEEEEEeCCCCEEEEEeecccchHHHHhcCCCCCEEEEEEEEEeccC
Confidence 5677876654 8999999999999999999 56788999999999999886533 334567999999999999999877
Q ss_pred CCceEEEEccccccH
Q psy9396 1052 LKNIRINAEKIFDIN 1066 (1149)
Q Consensus 1052 ~~~~~ii~~~i~~l~ 1066 (1149)
.+.+.+.++.|..++
T Consensus 88 ~~~~~~~~~~~~~~~ 102 (1041)
T 3f2b_A 88 VRDLVIIANDLNEIA 102 (1041)
T ss_dssp TTEEEEEEEEEEEEC
T ss_pred CcceEEEeeeeEEec
Confidence 777777777665544
No 51
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=92.43 E-value=0.89 Score=45.15 Aligned_cols=86 Identities=17% Similarity=0.282 Sum_probs=63.9
Q ss_pred cccccccCCCC-ceEEEEEEEeeeEee---ec------------CCcEEEEEEEeCCceEEEEEchHHHHHHHhhccCCc
Q psy9396 975 PIYLSELKPTY-SCTVSGIITELKLKT---TY------------RGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENE 1038 (1149)
Q Consensus 975 ~~~i~~l~~~~-~v~v~G~I~~vk~~~---TK------------~G~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~ 1038 (1149)
.+.+.||.++. .+.+.|.|.++.... ++ .++++-+.+-|+||.+-+++|.+.- +.+++|.
T Consensus 16 ~~kI~dL~pg~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgDeTG~I~ftlW~e~~----~~l~~Gd 91 (145)
T 1wjj_A 16 FVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGCILFTARNDQV----DLMKPGA 91 (145)
T ss_dssp SCCSTTCCTTCCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSSCEEEEEECTTHH----HHTCTTC
T ss_pred ceEHHHcCCCCCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEcCCcEEEEEEecCCc----CcCCCCC
Confidence 35688898865 688888888887665 33 2357889999999999999999743 4588999
Q ss_pred EEEEEEEEEeeccCCceEEEEcccccc
Q psy9396 1039 LLIVSGKVLEDRFLKNIRINAEKIFDI 1065 (1149)
Q Consensus 1039 ~v~v~G~v~~~~~~~~~~ii~~~i~~l 1065 (1149)
+|.+++-.-. .++|.+++.+.+--.+
T Consensus 92 ~v~i~na~v~-~~~G~~~L~vgk~g~I 117 (145)
T 1wjj_A 92 TVILRNSRID-MFKGTMRLGVDKWGRI 117 (145)
T ss_dssp EEEEEEEEEE-EETTEEEEEECTTCCB
T ss_pred EEEEeccEEE-eECCEEEEEECCCEEE
Confidence 9988764332 3578889988764444
No 52
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=92.36 E-value=0.49 Score=47.78 Aligned_cols=81 Identities=14% Similarity=0.226 Sum_probs=59.5
Q ss_pred ceEEEEEEEe-eeEeeecCC-cEEEEEEE------e--------CCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEee
Q psy9396 986 SCTVSGIITE-LKLKTTYRG-KILIIVID------D--------NSNSVEVIINNQLYEKNKNILKENELLIVSGKVLED 1049 (1149)
Q Consensus 986 ~v~v~G~I~~-vk~~~TK~G-~mafltle------D--------~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~ 1049 (1149)
.|.+.|.|.. ...+.|.+| .++-++|. | .+..+.|++|-+.-+.+...|++|..|.|+|+++.+
T Consensus 10 ~V~LiGrL~~dPelr~t~~G~~v~~f~lA~~~~~~d~~~Ge~~e~t~~i~vv~wg~~Ae~~~~~l~KG~~V~VeG~L~~~ 89 (158)
T 3tqy_A 10 KVILIGNLGQDPEVRYTPNGNAVANVTLATSTTWRDKQTGELQERTEWHRIAFFNRLAEIVGEYLRKGSKIYIEGSLRTR 89 (158)
T ss_dssp EEEEEEEESSSCEEEECTTCCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEEETHHHHHHHHHCCTTCEEEEEEEEEEE
T ss_pred EEEEEEEECCCCEEEECCCCCEEEEEEEEEcCceeccCCCCEeeeeEEEEEEEEhHHHHHHHhhcCCCCEEEEEEEEEee
Confidence 6788888875 456677788 66644332 2 244579999999888888889999999999999976
Q ss_pred cc---CCc----eEEEEccccccH
Q psy9396 1050 RF---LKN----IRINAEKIFDIN 1066 (1149)
Q Consensus 1050 ~~---~~~----~~ii~~~i~~l~ 1066 (1149)
.+ +|. +.|+|++|.-|.
T Consensus 90 ~~~dkdG~~r~~~eV~a~~i~~L~ 113 (158)
T 3tqy_A 90 KWQDKNGVDRYTTEIIANEMHMLD 113 (158)
T ss_dssp EEECSSSCEEEEEEEEEEEEEECC
T ss_pred eEECCCCCEEEEEEEEEeEEEEcc
Confidence 43 232 467888877765
No 53
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=92.17 E-value=0.51 Score=46.89 Aligned_cols=66 Identities=12% Similarity=0.279 Sum_probs=52.1
Q ss_pred ceEEEEEEEe-eeEeeecCC-cEEEEEEE--------------eCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEee
Q psy9396 986 SCTVSGIITE-LKLKTTYRG-KILIIVID--------------DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLED 1049 (1149)
Q Consensus 986 ~v~v~G~I~~-vk~~~TK~G-~mafltle--------------D~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~ 1049 (1149)
.+.+.|.|.. ...+.|++| .++-++|. |.+..+.|++|-+.-+.+...|++|..|.|+|+++.+
T Consensus 7 ~v~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~~Ge~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~L~~~ 86 (145)
T 1qvc_A 7 KVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQLRTR 86 (145)
T ss_dssp EEEEEEEESSCCEEECCSSSCCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEEEEEEE
T ss_pred EEEEEEEeCCCCEEEECCCCCEEEEEEEEEcCCcccccCCcEecccEEEEEEEehHHHHHHHHhcCCCCEEEEEEEEEee
Confidence 5788888874 456677888 77755553 1355799999999888888889999999999999976
Q ss_pred cc
Q psy9396 1050 RF 1051 (1149)
Q Consensus 1050 ~~ 1051 (1149)
.+
T Consensus 87 ~~ 88 (145)
T 1qvc_A 87 KW 88 (145)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 54
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=92.14 E-value=0.74 Score=44.43 Aligned_cols=66 Identities=11% Similarity=0.253 Sum_probs=49.8
Q ss_pred ceEEEEEEEe-eeEeeecCC-cEEEEEEE--------------eCCceEEEEEch-HHHHHHHhhccCCcEEEEEEEEEe
Q psy9396 986 SCTVSGIITE-LKLKTTYRG-KILIIVID--------------DNSNSVEVIINN-QLYEKNKNILKENELLIVSGKVLE 1048 (1149)
Q Consensus 986 ~v~v~G~I~~-vk~~~TK~G-~mafltle--------------D~tg~ie~vvFp-~~y~~~~~~l~~~~~v~v~G~v~~ 1048 (1149)
.+.+.|.|.. ...+.|.+| .++-++|. |.+.-+.|++|. +.-+.....+++|..|.|+|+++.
T Consensus 8 ~v~l~Grl~~dpelr~t~~G~~v~~f~lA~~~~~~~~~~G~~~~~t~~~~v~~wg~~~Ae~~~~~l~KG~~V~V~G~L~~ 87 (124)
T 3ulp_A 8 KIMLIGRVGCEPDIKILNGGDKVATFSLATNEFWRDRNTNELKSKTDWHRIVVYDQNIVDLIDKYLRKGRRVYVQGSLHT 87 (124)
T ss_dssp EEEEEEEECSCCEEEECTTSCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCHHHHHHHHHHCCTTCEEEEEEEEEE
T ss_pred EEEEEEEECCCcEEEECCCCCEEEEEEEEEccceecccCCcEecccEEEEEEEEEchHHHHHHhhcCCCCEEEEEEEEEe
Confidence 6778887774 456667788 56644331 234569999999 788888888999999999999997
Q ss_pred ecc
Q psy9396 1049 DRF 1051 (1149)
Q Consensus 1049 ~~~ 1051 (1149)
+.+
T Consensus 88 ~~~ 90 (124)
T 3ulp_A 88 RKW 90 (124)
T ss_dssp EEE
T ss_pred EEE
Confidence 644
No 55
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=91.88 E-value=0.67 Score=55.19 Aligned_cols=77 Identities=12% Similarity=0.258 Sum_probs=56.8
Q ss_pred CceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchH--------HHHHHHhhccCCcEEEEEEEEEeecc-----
Q psy9396 985 YSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQ--------LYEKNKNILKENELLIVSGKVLEDRF----- 1051 (1149)
Q Consensus 985 ~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~--------~y~~~~~~l~~~~~v~v~G~v~~~~~----- 1051 (1149)
..|+|+|.|.++|... |.++|+.|.|.+|.+.+++-++ .++ ....+..+.+|.|+|.|..+..
T Consensus 37 ~~V~v~GwV~~~R~~g---~~l~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~~-~~~~l~~e~~V~V~G~v~~~~~~~~~~ 112 (487)
T 1eov_A 37 KEVLFRARVHNTRQQG---ATLAFLTLRQQASLIQGLVKANKEGTISKNMVK-WAGSLNLESIVLVRGIVKKVDEPIKSA 112 (487)
T ss_dssp CEEEEEEEEEEEEECS---SSEEEEEEEETTEEEEEEEECCSSSSSCHHHHH-HHTTCCTTCEEEEEEEEEECSSCCTTS
T ss_pred CEEEEEEEEEEeeccC---CccEEEEEEECCccEEEEEeccccccccHHHHH-HHhcCCCCCEEEEEEEEEeCCCCCcCC
Confidence 4899999999876531 2369999999999999998543 233 3356888999999999987631
Q ss_pred -CCceEEEEcccccc
Q psy9396 1052 -LKNIRINAEKIFDI 1065 (1149)
Q Consensus 1052 -~~~~~ii~~~i~~l 1065 (1149)
.+++.+.|+++.-|
T Consensus 113 ~~g~~El~~~~i~vl 127 (487)
T 1eov_A 113 TVQNLEIHITKIYTI 127 (487)
T ss_dssp SEEEEEEEEEEEEEE
T ss_pred CCCcEEEEEEEEEEe
Confidence 14567777766444
No 56
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=91.78 E-value=0.87 Score=42.60 Aligned_cols=78 Identities=13% Similarity=0.181 Sum_probs=54.2
Q ss_pred ceEEEEEEEee-eEeeecCC-cEEEEEEEe-----CCc------e-EEEEEchHHHHHHHhhccCCcEEEEEEEEEeecc
Q psy9396 986 SCTVSGIITEL-KLKTTYRG-KILIIVIDD-----NSN------S-VEVIINNQLYEKNKNILKENELLIVSGKVLEDRF 1051 (1149)
Q Consensus 986 ~v~v~G~I~~v-k~~~TK~G-~mafltleD-----~tg------~-ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~ 1051 (1149)
.+.+.|.++.- ..+.|.+| .++-++|.- ..| . +++++|-+.-+ ... +.+|..|.|+|+++.+.+
T Consensus 9 kv~LiG~L~~dPelRytp~G~~v~~f~lA~~~~~~~~g~~~~~~~~i~vv~~gk~Ae-~~~-l~KG~~v~veGrL~~rs~ 86 (103)
T 3k8a_A 9 LVSLAALIEKAFPIRYTPAGIPVLDIILKHESWQEENGQQCLVQLEIPARILGRQAE-EWQ-YRQGDCATVEGFLAQKSR 86 (103)
T ss_dssp EEEEEEEEEEECCCEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEHHHHH-HST-TCTTCEEEEEEEEEESSS
T ss_pred EEEEEEEECCCCceEECCCCCEEEEEEEEEcccCccCCCEEEeeEEEEEEEEhHHhh-hhc-cCCCCEEEEEEEEEECcc
Confidence 57778877753 55577888 666444432 122 2 78999999888 665 999999999999998766
Q ss_pred CC-ceEEEEcccccc
Q psy9396 1052 LK-NIRINAEKIFDI 1065 (1149)
Q Consensus 1052 ~~-~~~ii~~~i~~l 1065 (1149)
++ .+-+.++++..+
T Consensus 87 ~~~~lvlhi~~i~~i 101 (103)
T 3k8a_A 87 RSLMPMLRIQNIKEY 101 (103)
T ss_dssp SCCCEEEEEEEEEEC
T ss_pred CCccEEEEEEEEEEc
Confidence 54 344556665543
No 57
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=91.70 E-value=0.57 Score=55.04 Aligned_cols=77 Identities=12% Similarity=0.203 Sum_probs=57.0
Q ss_pred CceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchH---HHHHHHhhccCCcEEEEEEEEEeec----cCCceEE
Q psy9396 985 YSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQ---LYEKNKNILKENELLIVSGKVLEDR----FLKNIRI 1057 (1149)
Q Consensus 985 ~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~---~y~~~~~~l~~~~~v~v~G~v~~~~----~~~~~~i 1057 (1149)
..|+|+|.|.++|... |.++|+.|.|.+|.+.+++-++ .|+.. .+..+.+|.|+|.|..+. ..+++.+
T Consensus 12 ~~V~v~Gwv~~~R~~G---k~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~--~l~~~~~v~v~G~v~~~~~~~~~~g~~El 86 (435)
T 2xgt_A 12 ERVCIKGWIHRMRRQG---KSLMFFILRDGTGFLQVLLMDKLCQTYDAL--TVNTECTVEIYGAIKEVPEGKEAPNGHEL 86 (435)
T ss_dssp SEEEEEEEEEEEEECT---TSEEEEEEECSSCEEEEEEEGGGGSSHHHH--HCCTTCEEEEEEEEEECC------TTEEE
T ss_pred CEEEEEEEEEEecccC---CCcEEEEEEECCceEEEEECCcchhHHHHh--cCCCCCEEEEEEEEEecCCCcCCCCcEEE
Confidence 4899999999876532 2599999999999999998654 34432 488899999999998632 1255777
Q ss_pred EEccccccH
Q psy9396 1058 NAEKIFDIN 1066 (1149)
Q Consensus 1058 i~~~i~~l~ 1066 (1149)
.++++.-+.
T Consensus 87 ~~~~~~vl~ 95 (435)
T 2xgt_A 87 IADFWKIIG 95 (435)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEee
Confidence 777665544
No 58
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=91.66 E-value=0.72 Score=48.70 Aligned_cols=78 Identities=15% Similarity=0.208 Sum_probs=59.7
Q ss_pred ceEEEEEEEeeeEeeecC---C-cEEEEEEEeCCce---EEEEEchHHHHHHHhhcc---CCcEEEEEEEEEeeccCC--
Q psy9396 986 SCTVSGIITELKLKTTYR---G-KILIIVIDDNSNS---VEVIINNQLYEKNKNILK---ENELLIVSGKVLEDRFLK-- 1053 (1149)
Q Consensus 986 ~v~v~G~I~~vk~~~TK~---G-~mafltleD~tg~---ie~vvFp~~y~~~~~~l~---~~~~v~v~G~v~~~~~~~-- 1053 (1149)
.++|+|.|+.++.+-.+. . .+.|++++|.||. +.+.+-+..|....-.+. .|.+|-|+|.+..- ++
T Consensus 87 ~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i~~k~~~~~~~~~gl~l~~~~~G~iV~VkG~i~~~--r~~~ 164 (220)
T 3kf8_A 87 QINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLSQEQFKEVGLTLDKKNYGKIVELEGEIYNW--YDSI 164 (220)
T ss_dssp EEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEEEEEHHHHHTTTCCTTSCCTTCEEEEEEEEEEC--CCST
T ss_pred EEEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceEEEEecHHHhhccCccccccCCCeEEEEEEEEEee--cccc
Confidence 689999999998775441 2 5899999999995 888888888876654333 58999999999863 23
Q ss_pred ------ceEEEEcccccc
Q psy9396 1054 ------NIRINAEKIFDI 1065 (1149)
Q Consensus 1054 ------~~~ii~~~i~~l 1065 (1149)
.-++.|+++.-+
T Consensus 165 ~~~~~~~rei~ve~i~vl 182 (220)
T 3kf8_A 165 NVSKKPDRELKVSKITVL 182 (220)
T ss_dssp TTTSCCCEEEEEEEEEEE
T ss_pred ccccccceEEEEEEEEEe
Confidence 347888777665
No 59
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=91.59 E-value=0.85 Score=46.47 Aligned_cols=66 Identities=20% Similarity=0.287 Sum_probs=51.6
Q ss_pred ceEEEEEEEe-eeEeeecCC-cEEEEEEEe---------------CCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEe
Q psy9396 986 SCTVSGIITE-LKLKTTYRG-KILIIVIDD---------------NSNSVEVIINNQLYEKNKNILKENELLIVSGKVLE 1048 (1149)
Q Consensus 986 ~v~v~G~I~~-vk~~~TK~G-~mafltleD---------------~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~ 1048 (1149)
.+.+.|.|.. ...+.|.+| .++-++|.- .+..+.|++|-+.-+.+...|++|..|+|+|+++.
T Consensus 6 ~V~LiG~L~~dPelr~t~~G~~va~f~lAv~~~~~~~~~Ge~~d~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~VeGrL~~ 85 (168)
T 3afp_A 6 TITIVGNLTADPELRFTSSGAAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIWREAAENVAESLTRGARVIVTGRLKQ 85 (168)
T ss_dssp EEEEEEEESSSCCCEECTTSCEEEEEEEEECC--------CCCCCCCEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEEE
T ss_pred EEEEEEEECCCCEEEECCCCCEEEEEEEEEccccccccCCcEecCCcEEEEEEEehHHHHHHHHhCCCCCEEEEEEEEEe
Confidence 6778888874 466677888 677544431 24579999999998989999999999999999997
Q ss_pred ecc
Q psy9396 1049 DRF 1051 (1149)
Q Consensus 1049 ~~~ 1051 (1149)
+.+
T Consensus 86 ~~~ 88 (168)
T 3afp_A 86 RSF 88 (168)
T ss_dssp EEE
T ss_pred eeE
Confidence 643
No 60
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=91.21 E-value=0.38 Score=56.82 Aligned_cols=87 Identities=11% Similarity=0.119 Sum_probs=61.3
Q ss_pred ccccccCCC--CceEEEEEEEeeeEeeecCC-cEEEEEEEeCCceEEEEEchHHHH-HH-HhhccCCcEEEEEEEEEeec
Q psy9396 976 IYLSELKPT--YSCTVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYE-KN-KNILKENELLIVSGKVLEDR 1050 (1149)
Q Consensus 976 ~~i~~l~~~--~~v~v~G~I~~vk~~~TK~G-~mafltleD~tg~ie~vvFp~~y~-~~-~~~l~~~~~v~v~G~v~~~~ 1050 (1149)
+.+.++... ..|+|+|.|.++|. .| +++|+.|.|.+|.+.+++-++... .+ ...+..+.+|.|+|.|....
T Consensus 20 ~~i~~~~~~~g~~V~v~Gwv~~~R~----~Gk~~~Fi~LrD~sg~iQvv~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~ 95 (456)
T 3m4p_A 20 CNIRDAAGLEGKLVTFKGWAYHIRK----ARKTLIFVELRDGSGYCQCVIFGKELCEPEKVKLLTRECSLEITGRLNAYA 95 (456)
T ss_dssp EECCSTTCCCSSEEEEEEEEEEEEC----CSSSEEEEEEECSSCEEEEEEESTTTTCHHHHTTCCTTCEEEEEEEEECCC
T ss_pred EEhhhhhhcCCCEEEEEEEEEEEec----CCCceEEEEEEeCCccEEEEEecccchhhHHhhcCCCccEEEEEeEEEecC
Confidence 456777442 38999999987764 23 599999999999999998773211 11 23588899999999998542
Q ss_pred cC---------CceEEEEccccccH
Q psy9396 1051 FL---------KNIRINAEKIFDIN 1066 (1149)
Q Consensus 1051 ~~---------~~~~ii~~~i~~l~ 1066 (1149)
.. +++.+.|+++.-+.
T Consensus 96 ~~~~~~~~~t~g~~El~~~~i~vl~ 120 (456)
T 3m4p_A 96 GKNHPPEIADILNLEMQVTEWKVIG 120 (456)
T ss_dssp SSSCCCSCTTBCSSEEEEEEEEEEE
T ss_pred CcccCcccCCCCcEEEEEeEEEEEe
Confidence 11 55677777665443
No 61
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=90.97 E-value=1 Score=43.78 Aligned_cols=77 Identities=18% Similarity=0.184 Sum_probs=55.6
Q ss_pred ceEEEEEEEe-eeEeeecCCcEEEEEEE--------------e-CCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEee
Q psy9396 986 SCTVSGIITE-LKLKTTYRGKILIIVID--------------D-NSNSVEVIINNQLYEKNKNILKENELLIVSGKVLED 1049 (1149)
Q Consensus 986 ~v~v~G~I~~-vk~~~TK~G~mafltle--------------D-~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~ 1049 (1149)
.+.+.|-+.. ...+.|.+|.++-++|- | .+.-++|++|.+.-+.+...|++|..|+|+|+++.+
T Consensus 17 ~V~LiGrL~~dPelr~t~~G~v~~fslAv~~~~~d~~~Ge~~d~~t~w~~v~~wg~~Ae~~~~~l~KG~~V~VeGrL~~~ 96 (128)
T 4dam_A 17 MICAVGNVATTPVFRDLANGPSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQGRLKVR 96 (128)
T ss_dssp EEEEEEEECSCCEEEEETTEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEE
T ss_pred EEEEEEEECCCCEEEEcCCCCEEEEEEEEcCceecccCCceecCCcEEEEEEEEcHHHHHHHHhcCCCCEEEEEEEEEEe
Confidence 6788887774 56667777755533331 1 455789999999988888999999999999999876
Q ss_pred cc--CCc----eEEEEccc
Q psy9396 1050 RF--LKN----IRINAEKI 1062 (1149)
Q Consensus 1050 ~~--~~~----~~ii~~~i 1062 (1149)
.+ +|. ..|+|++|
T Consensus 97 ~~dkdG~~r~~~ev~a~~v 115 (128)
T 4dam_A 97 TDVREGQSRTSADIDAVAI 115 (128)
T ss_dssp EEEETTEEEEEEEEEEEEE
T ss_pred EEcCCCCEEEEEEEEEEEE
Confidence 44 232 34566655
No 62
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=90.69 E-value=0.38 Score=56.63 Aligned_cols=69 Identities=20% Similarity=0.292 Sum_probs=57.0
Q ss_pred ccccccCCCC-ceEEEEEEEee---eEeeecCC--cEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEEE
Q psy9396 976 IYLSELKPTY-SCTVSGIITEL---KLKTTYRG--KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSG 1044 (1149)
Q Consensus 976 ~~i~~l~~~~-~v~v~G~I~~v---k~~~TK~G--~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G 1044 (1149)
.+|++|.+.. ...|.|.|+.. |.....+| ++.-+.|-|++|.|.+++|.+.-++|.+.|++|.++.|++
T Consensus 4 ~~I~~L~p~~~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~De~G~I~at~~~~~~~~f~~~l~eG~vy~Is~ 78 (444)
T 4gop_C 4 YPIEGLSPYQNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLDDSGEIKATGFNDAVDRFYPLLQENHVYLISK 78 (444)
T ss_dssp CCSTTCCTTCCSCEEEEECCEECCCEEEECSSCEEEEEEEEEECSSCEEEEEEETHHHHHHTTTCCTTCEEEEES
T ss_pred eeHHHCCCCCcceEEEEEEEEccCcceecCCCCCceEEEEEEEcCCCEEEEEEeHHHHHHHHHheecCCEEEEcC
Confidence 5788888865 78888888864 44444554 5667889999999999999999999999999999998875
No 63
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=90.69 E-value=0.98 Score=44.07 Aligned_cols=82 Identities=12% Similarity=0.162 Sum_probs=58.5
Q ss_pred ceEEEEEEEe-eeEeeecCC-cEEEEEEE-------------------eCCceEEEEEchH-HHHHHHhhccCCcEEEEE
Q psy9396 986 SCTVSGIITE-LKLKTTYRG-KILIIVID-------------------DNSNSVEVIINNQ-LYEKNKNILKENELLIVS 1043 (1149)
Q Consensus 986 ~v~v~G~I~~-vk~~~TK~G-~mafltle-------------------D~tg~ie~vvFp~-~y~~~~~~l~~~~~v~v~ 1043 (1149)
.|.+.|.|.. ...+.|.+| .++-++|. +.+..+.|++|.+ .-+.+...|++|..|.|+
T Consensus 16 ~V~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~g~~~~~g~~~~~t~w~~v~~wg~~~Ae~~~~~l~KG~~V~V~ 95 (132)
T 3ull_A 16 RVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLE 95 (132)
T ss_dssp EEEEEEEECSCCEEECCTTSCCEEEEEEEEEEEECC---------CCEEEEEEEEEEECSTTHHHHHHHHCCTTCEEEEE
T ss_pred EEEEEEEECCCCEEEECCCCCEEEEEEEEEecceeccccccccCCceecceEEEEEEEEchHHHHHHHhhCCCCCEEEEE
Confidence 6888888874 466677788 66633321 1344678899984 778888889999999999
Q ss_pred EEEEeecc---CC----ceEEEEccccccHH
Q psy9396 1044 GKVLEDRF---LK----NIRINAEKIFDINV 1067 (1149)
Q Consensus 1044 G~v~~~~~---~~----~~~ii~~~i~~l~~ 1067 (1149)
|+++.+.+ +| ...|+|++|.-|+.
T Consensus 96 G~L~~~~~~d~dG~~r~~~ev~a~~i~~l~~ 126 (132)
T 3ull_A 96 GKIDYGEYMDKNNVRRQATTIIADNIIFLSD 126 (132)
T ss_dssp EEEECCCEESSSSEECCCEEEEEEEEECC--
T ss_pred EEEEeeEEECCCCCEEEEEEEEEEEEEEccC
Confidence 99997533 23 24689988887754
No 64
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=90.45 E-value=1 Score=44.20 Aligned_cols=81 Identities=16% Similarity=0.193 Sum_probs=57.4
Q ss_pred ceEEEEEEEe-eeEeeecCC-cEEEEEEEe-----CCc-------eEEEEEchHHHHHHHhhccCCcEEEEEEEEEeecc
Q psy9396 986 SCTVSGIITE-LKLKTTYRG-KILIIVIDD-----NSN-------SVEVIINNQLYEKNKNILKENELLIVSGKVLEDRF 1051 (1149)
Q Consensus 986 ~v~v~G~I~~-vk~~~TK~G-~mafltleD-----~tg-------~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~ 1051 (1149)
.|.+.|.++. ...+.|.+| ..+-++|.- ..| .++|++|-+.-+.+...+.+|..|.|+|+++.+..
T Consensus 21 kViLiGrL~~DPElRyTpsG~~Va~ftLA~~~~~~~~G~~~~~~~~i~vv~wGk~AE~~~~yl~KGs~V~VeGrL~tr~~ 100 (134)
T 1v1q_A 21 RLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFISCHKA 100 (134)
T ss_dssp EEEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESTGGGGGGTTCCTTCEEEEEEEEEEECT
T ss_pred EEEEEEEECcCCceEECCCCCEEEEEEEEEeCcCcCCCCEecceEEEEEEEEhHHHHHHHHhcCCCCEEEEEEEEEEEEC
Confidence 5778888774 466678888 676444432 223 38999999988888889999999999999997632
Q ss_pred C-C--ceEEEEccccccH
Q psy9396 1052 L-K--NIRINAEKIFDIN 1066 (1149)
Q Consensus 1052 ~-~--~~~ii~~~i~~l~ 1066 (1149)
. | ...++++++.-++
T Consensus 101 k~G~kr~~~~a~~i~~l~ 118 (134)
T 1v1q_A 101 KNGLSKMVLHAEQIELID 118 (134)
T ss_dssp TTTSCEEEEEEEEEEETT
T ss_pred CCCCEEEEEEEEEEEECc
Confidence 2 2 2345666655553
No 65
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=90.44 E-value=1.2 Score=46.33 Aligned_cols=77 Identities=16% Similarity=0.284 Sum_probs=55.0
Q ss_pred ceEEEEEEEe-eeEeeecCC-cEEEEEEE--------------eCCceEEEEEchH-HHHHHHhhccCCcEEEEEEEEEe
Q psy9396 986 SCTVSGIITE-LKLKTTYRG-KILIIVID--------------DNSNSVEVIINNQ-LYEKNKNILKENELLIVSGKVLE 1048 (1149)
Q Consensus 986 ~v~v~G~I~~-vk~~~TK~G-~mafltle--------------D~tg~ie~vvFp~-~y~~~~~~l~~~~~v~v~G~v~~ 1048 (1149)
+|++.|.|.. ...+.|.+| .++-++|. |.|..+.|++|-+ +-+.....|++|..|+|+|+++.
T Consensus 28 kV~LiGrLg~DPElR~t~~G~~Va~FsLAvnr~~kd~~~Ge~~e~Tdwi~Vvawgk~lAe~~~~yL~KGs~V~VeGrL~t 107 (193)
T 3pgz_A 28 KVILIGNLGADPEIRRLNSGDQVANLRIATSESWRDRNTNERKERTEWHNIVIFNENLVKVVEQYLKKGSKIYIEGQLQT 107 (193)
T ss_dssp EEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEECCC-----EEEEEEEEEEECCHHHHHHHHHHCCTTCEEEEEEEEEE
T ss_pred EEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceeccCCCceeeeeEEEEEEEECHHHHHHHHhhcCCCCEEEEEEEEEE
Confidence 6888998885 466677888 66644332 1245689999996 66777788999999999999997
Q ss_pred eccC---Cc----eEEEEccc
Q psy9396 1049 DRFL---KN----IRINAEKI 1062 (1149)
Q Consensus 1049 ~~~~---~~----~~ii~~~i 1062 (1149)
+.+. +. ..|+|+++
T Consensus 108 rswedkdG~kr~~tEVva~~~ 128 (193)
T 3pgz_A 108 RKWQDQNGNDRYTTEIVLQKY 128 (193)
T ss_dssp EEEECTTSCEEEEEEEEECTT
T ss_pred EEeECCCCCEEEEEEEEEEec
Confidence 6442 32 34777753
No 66
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=90.11 E-value=1.2 Score=51.24 Aligned_cols=81 Identities=21% Similarity=0.263 Sum_probs=63.2
Q ss_pred ccccCCCCceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEch--HHHHHHHhhccCCcEEEEEEEEEeeccCCce
Q psy9396 978 LSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINN--QLYEKNKNILKENELLIVSGKVLEDRFLKNI 1055 (1149)
Q Consensus 978 i~~l~~~~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp--~~y~~~~~~l~~~~~v~v~G~v~~~~~~~~~ 1055 (1149)
+.++.+.+.+++-|.|++. +++-+|.-.|++++|.++.++|++|. +.+++.-..|..|..|.|-|.+.. +
T Consensus 278 i~~~~~~~~~~v~G~V~~~--P~~~~GGHV~f~l~d~~~~i~c~ayeptk~fr~~vr~L~~GD~V~v~G~v~~----g-- 349 (402)
T 3au7_A 278 VHRLENYRSYRLRGRVTLE--PYDIEGGHVFFEIDTKFGSVKCAAFEPTKQFRNVIRLLRKGDVVEVYGSMKK----D-- 349 (402)
T ss_dssp CSSCCTTCEEEEEEEEEEE--EEEETTTEEEEEEEETTEEEEEEECGGGTTHHHHHTTCCTTCEEEEEEEEET----T--
T ss_pred ccccccCceEEEEEEEecC--cEeccCceEEEEEEcCCCEEEEEEEccchHHHHHHhcCCCCCEEEEEEeecC----C--
Confidence 3444445588999999876 22333447899999999999999998 568888889999999999999863 3
Q ss_pred EEEEccccccH
Q psy9396 1056 RINAEKIFDIN 1066 (1149)
Q Consensus 1056 ~ii~~~i~~l~ 1066 (1149)
+|.++++..+.
T Consensus 350 tLnvEk~~v~~ 360 (402)
T 3au7_A 350 TINLEKIQIVE 360 (402)
T ss_dssp EEEEEEEEEEE
T ss_pred EEEEEEEEEcc
Confidence 78888776653
No 67
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=89.33 E-value=1.2 Score=49.74 Aligned_cols=80 Identities=18% Similarity=0.386 Sum_probs=60.1
Q ss_pred ceEEEEEEEe-eeEeeecCC-cEEEEEEE-------------eCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeec
Q psy9396 986 SCTVSGIITE-LKLKTTYRG-KILIIVID-------------DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDR 1050 (1149)
Q Consensus 986 ~v~v~G~I~~-vk~~~TK~G-~mafltle-------------D~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~ 1050 (1149)
.+.+.|.|.. ...+.|++| .++-++|. +.+..+.|++|-+.-+.... |++|..|.|+|+++.+.
T Consensus 131 ~V~L~GrL~~dPelr~t~~G~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~Ae~~~~-l~KG~~V~V~GrL~~~~ 209 (301)
T 1se8_A 131 EVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAENMKE-LRKGDPVMIMGRLVNEG 209 (301)
T ss_dssp EEEEEEEECSCCEEEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTT-CCTTCEEEEEEEEEEEE
T ss_pred EEEEEEEECcCCEEEECCCCCEEEEEEEEEcCceEcCCCCcccccEEEEEEECCHHHHHHHh-cCCCCEEEEEEEEeeee
Confidence 5778898875 466678888 67744442 22446999999998888888 99999999999999865
Q ss_pred cCC-------ceEEEEccccccH
Q psy9396 1051 FLK-------NIRINAEKIFDIN 1066 (1149)
Q Consensus 1051 ~~~-------~~~ii~~~i~~l~ 1066 (1149)
+.+ ...|+|++|..|.
T Consensus 210 y~dkdG~~r~~~ev~a~~i~~l~ 232 (301)
T 1se8_A 210 WTDKDGNKRNSTRVEATRVEALA 232 (301)
T ss_dssp CC------CEEEEEEEEEEEECC
T ss_pred EECCCCcEEEEEEEEEEEEEEec
Confidence 432 2468888887775
No 68
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=89.32 E-value=2 Score=42.87 Aligned_cols=65 Identities=14% Similarity=0.205 Sum_probs=50.3
Q ss_pred ceEEEEEEEeeeEeeecCC-cEEEEEE--E------------eCCceEEEEEchHH-HHHHHhhccCCcEEEEEEEEEee
Q psy9396 986 SCTVSGIITELKLKTTYRG-KILIIVI--D------------DNSNSVEVIINNQL-YEKNKNILKENELLIVSGKVLED 1049 (1149)
Q Consensus 986 ~v~v~G~I~~vk~~~TK~G-~mafltl--e------------D~tg~ie~vvFp~~-y~~~~~~l~~~~~v~v~G~v~~~ 1049 (1149)
.|.++|-|..--++.| +| .++-++| . +.+..+.|++|.+. -+.+...|++|..|+|+|+++.+
T Consensus 8 kV~LiGrLg~DPer~t-~G~~va~FslAv~~~~~~~~Ge~~~~~t~w~~vv~wgk~lAe~~~~yl~KG~~V~VeGrL~~r 86 (148)
T 3k7u_C 8 SVTLVGVVHDIQSGFV-YEDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCVNGRLRLS 86 (148)
T ss_dssp CEEEEEEEEEEEEEES-SSSEEEEEEEEEECC-----------CEEEEEEEEESHHHHHHHHHHCCTTCEEEEEEEEEEC
T ss_pred EEEEEEEeccCCEeee-CCcEEEEEEEEECCceecCCCCEEccccEEEEEEEECcHHHHHHHhhCCCCCEEEEEEEEEee
Confidence 6888898886544677 88 6663333 2 34668999999998 67788889999999999999987
Q ss_pred cc
Q psy9396 1050 RF 1051 (1149)
Q Consensus 1050 ~~ 1051 (1149)
.+
T Consensus 87 ~~ 88 (148)
T 3k7u_C 87 PQ 88 (148)
T ss_dssp CC
T ss_pred ee
Confidence 55
No 69
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=88.37 E-value=1.1 Score=48.96 Aligned_cols=80 Identities=20% Similarity=0.302 Sum_probs=59.9
Q ss_pred ceEEEEEEEe-eeEeeecCC-cEEEEEEE----------eCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeecc--
Q psy9396 986 SCTVSGIITE-LKLKTTYRG-KILIIVID----------DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRF-- 1051 (1149)
Q Consensus 986 ~v~v~G~I~~-vk~~~TK~G-~mafltle----------D~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~-- 1051 (1149)
.+.+.|.|.. ...+.|++| .++-++|. +.+..+.|++|.+.-+... .|++|..|.|+|+++.+.+
T Consensus 130 ~v~l~G~l~~dpe~r~t~~G~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~Ae~~~-~l~KG~~V~V~G~l~~~~~~~ 208 (264)
T 2fxq_A 130 QVILMGNLTRDPDLRYTPQGTAVVRLGLAVNERRRGQEEERTHFLEVQAWRELAEWAS-ELRKGDGLLVIGRLVNDSWTS 208 (264)
T ss_dssp EEEEEEEESSCCCCEECTTCCEEEEEEEEEECCC-------EEEEEEEEEHHHHHHHT-TCCTTCEEEEEEEEEEEEEEC
T ss_pred EEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCcCCCCccccEEEEEEEEChHHHHhh-hcCCCCEEEEEEEEEeeEEEC
Confidence 6788898885 566678888 67755542 2355799999999888888 9999999999999997643
Q ss_pred -CCc----eEEEEccccccH
Q psy9396 1052 -LKN----IRINAEKIFDIN 1066 (1149)
Q Consensus 1052 -~~~----~~ii~~~i~~l~ 1066 (1149)
+|. ..++|++|..|+
T Consensus 209 ~dG~~~~~~ev~a~~i~~l~ 228 (264)
T 2fxq_A 209 SSGERRFQTRVEALRLERPT 228 (264)
T ss_dssp TTSCEEEEEEEEEEEEECCC
T ss_pred CCCCEEEEEEEEEEEEEECc
Confidence 232 357888877765
No 70
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=88.16 E-value=1.8 Score=44.14 Aligned_cols=66 Identities=14% Similarity=0.268 Sum_probs=51.4
Q ss_pred ceEEEEEEEe-eeEeeecCC-cEEEEEEE--------------eCCceEEEEEchH-HHHHHHhhccCCcEEEEEEEEEe
Q psy9396 986 SCTVSGIITE-LKLKTTYRG-KILIIVID--------------DNSNSVEVIINNQ-LYEKNKNILKENELLIVSGKVLE 1048 (1149)
Q Consensus 986 ~v~v~G~I~~-vk~~~TK~G-~mafltle--------------D~tg~ie~vvFp~-~y~~~~~~l~~~~~v~v~G~v~~ 1048 (1149)
+|.+.|.|.. ...+.|.+| .++-++|. |.+..+.|++|.+ .-+.+...|++|..|.|+|+++.
T Consensus 25 kV~LiGrL~~DPelr~t~~G~~v~~FslAv~~~~~~~~~Ge~~~~t~~i~vv~wg~~lAe~~~~~l~KG~~V~VeGrL~~ 104 (169)
T 3lgj_A 25 KVMLIGYLGDDPESKTMTSGAEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFAKIALQYLHKGSKVYIEGKLQT 104 (169)
T ss_dssp EEEEEEEESSCCEEEECTTSCEEEEEEEEEEC------------CEEEEEEEECCHHHHHHHHHHCCTTCEEEEEEEEEE
T ss_pred EEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecccCCccccccEEEEEEEeCHHHHHHHHHhCCCCCEEEEEEEEEE
Confidence 7889998885 466678888 66643331 1345789999999 88888889999999999999997
Q ss_pred ecc
Q psy9396 1049 DRF 1051 (1149)
Q Consensus 1049 ~~~ 1051 (1149)
+.+
T Consensus 105 r~~ 107 (169)
T 3lgj_A 105 RKW 107 (169)
T ss_dssp ECC
T ss_pred EEE
Confidence 644
No 71
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=88.04 E-value=0.33 Score=42.51 Aligned_cols=42 Identities=29% Similarity=0.318 Sum_probs=35.9
Q ss_pred cccccCCccHHHHHHHHHHHhcCCCCCHHHHHhhcccCCCCHHHHHHH
Q psy9396 834 GLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSL 881 (1149)
Q Consensus 834 gl~~Ikgvg~~~~~~i~~~r~~g~f~~~~df~~r~~~~~~~~~~le~L 881 (1149)
-|..|+|||+..|++|++.| +|.|++|+.+- ..++.+.++.+
T Consensus 28 ~L~~ipGIG~~~A~~Il~~r---~~~s~~eL~~v---~Gig~k~~~~i 69 (75)
T 2duy_A 28 ELMALPGIGPVLARRIVEGR---PYARVEDLLKV---KGIGPATLERL 69 (75)
T ss_dssp HHTTSTTCCHHHHHHHHHTC---CCSSGGGGGGS---TTCCHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHc---ccCCHHHHHhC---CCCCHHHHHHH
Confidence 47889999999999999998 89999999754 56888877766
No 72
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=87.85 E-value=1.1 Score=42.25 Aligned_cols=80 Identities=18% Similarity=0.341 Sum_probs=56.8
Q ss_pred CCceEEEEEEE-eeeEeeecCC-cEEEEEEE-----eCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEe-ecc---C
Q psy9396 984 TYSCTVSGIIT-ELKLKTTYRG-KILIIVID-----DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLE-DRF---L 1052 (1149)
Q Consensus 984 ~~~v~v~G~I~-~vk~~~TK~G-~mafltle-----D~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~-~~~---~ 1052 (1149)
+++|.+.|-++ ...-+.|.+| .++-++|. +.+..+.+++|.++-+... +.+|..+.|+|+++. +.+ +
T Consensus 11 ~N~V~LiGrl~~dpelr~t~~G~~v~~f~lAV~R~~~~~Dfi~ivvw~klAe~~~--~~kG~~v~v~G~lrsy~~~~~~d 88 (107)
T 4gs3_A 11 NNTVTLVGKVFTPLEFSHELYGEKFFNFILEVPRLSETKDYLPITISNRLFEGMN--LEVGTRVKIEGQLRSYNRKSPEE 88 (107)
T ss_dssp CSCEEEEEEECSCCEEEEEETTEEEEEEEEEEECTTSCEEEEEEEEEGGGSTTCC--CCTTCEEEEEEEEEEEECC----
T ss_pred CCEEEEEEEECCCceEEEecCCcEEEEEEEEeCCCCCCCcEEEEEEEhHHhhHHh--hcCCCEEEEEEEEEecceEECCC
Confidence 34788889887 5566788889 67755554 6777999999998877654 458999999999974 322 2
Q ss_pred Cc----eEEEEcccccc
Q psy9396 1053 KN----IRINAEKIFDI 1065 (1149)
Q Consensus 1053 ~~----~~ii~~~i~~l 1065 (1149)
|. ..++|++|.-|
T Consensus 89 G~~R~v~eV~a~~i~fl 105 (107)
T 4gs3_A 89 GKNKLILTVFARDISVV 105 (107)
T ss_dssp ----EEEEEEEEEEEEE
T ss_pred CCEEEEEEEEEEEEEEc
Confidence 32 45777777554
No 73
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=87.70 E-value=1.5 Score=48.97 Aligned_cols=81 Identities=15% Similarity=0.180 Sum_probs=59.4
Q ss_pred ceEEEEEEEe-eeEeeecCC-cEEEEEEEe-------------CCceEEEEEchHHHHHHHhh-ccCCcEEEEEEEEEee
Q psy9396 986 SCTVSGIITE-LKLKTTYRG-KILIIVIDD-------------NSNSVEVIINNQLYEKNKNI-LKENELLIVSGKVLED 1049 (1149)
Q Consensus 986 ~v~v~G~I~~-vk~~~TK~G-~mafltleD-------------~tg~ie~vvFp~~y~~~~~~-l~~~~~v~v~G~v~~~ 1049 (1149)
.|.+.|.|.. ...+.|.+| .++-++|.- .+..+.|++|-+.-+.+... |++|..|.|+|+++.+
T Consensus 7 ~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~r~~~~~~G~~~~~t~~i~vv~~g~~Ae~~~~~~l~KG~~V~VeG~L~~r 86 (301)
T 1se8_A 7 HVYLIGALARDPELRYTGNGMAVFEATVAGEDRVIGNDGRERNLPWYHRVSILGKPAEWQAERNLKGGDAVVVEGTLEYR 86 (301)
T ss_dssp EEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEC-------CEEEEEEEEEEESHHHHHHHHTCCCTTCEEEEEEEEEEE
T ss_pred EEEEEEEECCCceEEECCCCCEEEEEEEEEcCceECCCCCEecceEEEEEEEEcHHHHHHHhhCCCCCCEEEEEEEEEee
Confidence 5788888875 455677888 666444421 23468999999988888888 9999999999999976
Q ss_pred ccC---Cc----eEEEEccccccH
Q psy9396 1050 RFL---KN----IRINAEKIFDIN 1066 (1149)
Q Consensus 1050 ~~~---~~----~~ii~~~i~~l~ 1066 (1149)
.+. |. +.|+|++|.-|+
T Consensus 87 ~~~dkdG~~r~~~ev~a~~i~~l~ 110 (301)
T 1se8_A 87 QWEAPEGGKRSAVNVKALRMEQLG 110 (301)
T ss_dssp EEC-----CEEEEEEEEEEEEECS
T ss_pred eEECCCCCEEEEEEEEEeEEEEee
Confidence 443 22 458888887775
No 74
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=87.30 E-value=0.44 Score=49.06 Aligned_cols=65 Identities=12% Similarity=0.265 Sum_probs=48.8
Q ss_pred ceEEEEEEEe-eeEeeecCC-cEEEEEEE--e------------CCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEee
Q psy9396 986 SCTVSGIITE-LKLKTTYRG-KILIIVID--D------------NSNSVEVIINNQLYEKNKNILKENELLIVSGKVLED 1049 (1149)
Q Consensus 986 ~v~v~G~I~~-vk~~~TK~G-~mafltle--D------------~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~ 1049 (1149)
.|++.|.|.. ...+.|++| .++-++|. . .+..+.|++|-+.-+.+...|++|..|+|+|+++.+
T Consensus 8 ~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~~~~~d~~~Ge~~~~t~~i~vv~wg~~Ae~~~~~l~KG~~V~VeGrL~~r 87 (178)
T 1eqq_A 8 KVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQLRTR 87 (178)
T ss_dssp EEEEEEEESSSCCCCEETTTEECCCCEEEEEECCCCSSSSSCCCEEEEEEEEECHHHHHHHHHHCCTTCEEEECCEEEEE
T ss_pred EEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCeecCCCCceecccEEEEEEEccHHHHHHHHhcCCCCEEEEEEEEEee
Confidence 5778888774 455567778 55533332 1 244689999999888888899999999999999975
Q ss_pred c
Q psy9396 1050 R 1050 (1149)
Q Consensus 1050 ~ 1050 (1149)
.
T Consensus 88 ~ 88 (178)
T 1eqq_A 88 K 88 (178)
T ss_dssp E
T ss_pred e
Confidence 4
No 75
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=85.53 E-value=3.5 Score=38.36 Aligned_cols=66 Identities=11% Similarity=0.113 Sum_probs=45.8
Q ss_pred ceEEEEEEEee-eEeeecCC-cEEEEEEEeC-----Cc------e-EEEEEchHHHHHHHhhccCCcEEEEEEEEEeecc
Q psy9396 986 SCTVSGIITEL-KLKTTYRG-KILIIVIDDN-----SN------S-VEVIINNQLYEKNKNILKENELLIVSGKVLEDRF 1051 (1149)
Q Consensus 986 ~v~v~G~I~~v-k~~~TK~G-~mafltleD~-----tg------~-ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~ 1051 (1149)
.+.+.|.++.- ..+.|.+| ..+-++|+-. .| . +++++|-+.-+.... +.+|..|.|+|+++.+.+
T Consensus 4 ~v~L~GrLt~dPelRyTpsG~~V~~f~LA~~s~~~e~g~~r~~~f~i~vv~wGk~AE~~~~-~~kGs~V~VeGrL~trs~ 82 (101)
T 3en2_A 4 RLQLVATLVEREVMRYTPAGVPIVNCLLSYSGQAMEAQAARQVEFSIEALGAGKMASVLDR-IAPGTVLECVGFLARKHR 82 (101)
T ss_dssp CEEEEEEEEEECCCEECTTCCEEEEEEEEEEEEEECC--EEEEEEEEEEEEETHHHHHHTT-SCTTCEEEEEEEEEECC-
T ss_pred EEEEEEEECcCccEEECCCCCEEEEEEEEEcceEecCCCcEeeeEEEEEEEEhHHHHHHhh-cCCCCEEEEEEEEEeCcC
Confidence 56777777644 44567888 6664444321 22 2 788999998887776 689999999999997654
Q ss_pred C
Q psy9396 1052 L 1052 (1149)
Q Consensus 1052 ~ 1052 (1149)
+
T Consensus 83 ~ 83 (101)
T 3en2_A 83 S 83 (101)
T ss_dssp -
T ss_pred C
Confidence 3
No 76
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=85.51 E-value=1.9 Score=47.89 Aligned_cols=88 Identities=18% Similarity=0.212 Sum_probs=62.4
Q ss_pred cccccccccCCCCceEEEEEEEeeeEeeecCC--cEEEEEEEeCCc-eEEEEEchHHHHHHHhhccCCcEEEEEEEEEee
Q psy9396 973 FIPIYLSELKPTYSCTVSGIITELKLKTTYRG--KILIIVIDDNSN-SVEVIINNQLYEKNKNILKENELLIVSGKVLED 1049 (1149)
Q Consensus 973 ~~~~~i~~l~~~~~v~v~G~I~~vk~~~TK~G--~mafltleD~tg-~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~ 1049 (1149)
+..++|+++..+..+-++|+|+.+..++..+| -++-++|.|.+- .+.+.+|.+..+..-.....|.+|++.. +...
T Consensus 4 y~y~~l~~l~~~~~vnvigVV~~~~~p~~s~G~d~~~tl~I~D~S~~gl~v~iF~~~~~~LP~v~~~GDII~l~~-vki~ 82 (294)
T 1xjv_A 4 YIYTPLNQLKGGTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTNVKLTCLLFSGNYEALPIIYKNGDIVRFHR-LKIQ 82 (294)
T ss_dssp CCCCCGGGCCSSEEEEEEEEEEEEEEEEECSSSSEEEEEEEECTTCCEEEEEEEESSGGGSCCCCSTTCEEEEEE-EEEE
T ss_pred ceEEEHHHhhCCCeeEEEEEEEEcCCCccCCCCeEEEEEEEEcCCCCCEEEEEECCChHHCCCCCCCCCEEEEEE-EEEE
Confidence 44567887765558899999999987744356 467899999543 4999999876666666668888988873 3333
Q ss_pred ccCCceEEEEcc
Q psy9396 1050 RFLKNIRINAEK 1061 (1149)
Q Consensus 1050 ~~~~~~~ii~~~ 1061 (1149)
.+++.++.+...
T Consensus 83 ~~~g~~~~v~~~ 94 (294)
T 1xjv_A 83 VYKKETQGITSS 94 (294)
T ss_dssp EETTEEEEEEEE
T ss_pred EECCeEEEEccC
Confidence 356777776543
No 77
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=83.50 E-value=2.9 Score=45.57 Aligned_cols=81 Identities=19% Similarity=0.243 Sum_probs=56.5
Q ss_pred ceEEEEEEEe-eeEeeecCC-cEEEEEEE-------------eCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeec
Q psy9396 986 SCTVSGIITE-LKLKTTYRG-KILIIVID-------------DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDR 1050 (1149)
Q Consensus 986 ~v~v~G~I~~-vk~~~TK~G-~mafltle-------------D~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~ 1050 (1149)
.+.+.|.|.. ...+.|.+| .++-++|. +.+..+.|++|.+.-+.....|++|..|.|+|+++.+.
T Consensus 7 ~v~L~G~l~~dpelr~t~~G~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~~g~~Ae~~~~~l~KG~~V~V~G~L~~~~ 86 (264)
T 2fxq_A 7 QVFLIGTLTARPDMRYTPGGLAILDLNLAGQDAFTDESGQEREVPWYHRVRLLGRQAEMWGDLLEKGQLIFVEGRLEYRQ 86 (264)
T ss_dssp EEEEEEEESSCCCCEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTTTCCTTCEEEEEEEEEEC-
T ss_pred EEEEEEEeccCCeEEECCCCCEEEEEEEEECCcEECCCCCEecccEEEEEEEEchHHHHHHHhCCCCCEEEEEEEEEeee
Confidence 5677777764 344566777 56644432 12346899999998888888899999999999998764
Q ss_pred cC--C----ceEEEEccccccH
Q psy9396 1051 FL--K----NIRINAEKIFDIN 1066 (1149)
Q Consensus 1051 ~~--~----~~~ii~~~i~~l~ 1066 (1149)
+. | ...++|++|..|+
T Consensus 87 ~~~dG~~r~~~ev~a~~i~~l~ 108 (264)
T 2fxq_A 87 WEKDGEKKSEVQVRAEFIDPLE 108 (264)
T ss_dssp --------CCEEEEEEEEEECC
T ss_pred EEeCCEEEEEEEEEEEEEEECc
Confidence 43 2 2468888887764
No 78
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=81.44 E-value=0.94 Score=57.11 Aligned_cols=71 Identities=28% Similarity=0.312 Sum_probs=54.1
Q ss_pred ccccccCCCCceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchHHHHHHHhhccC--CcEEEEEEEEEe
Q psy9396 976 IYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKE--NELLIVSGKVLE 1048 (1149)
Q Consensus 976 ~~i~~l~~~~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~~y~~~~~~l~~--~~~v~v~G~v~~ 1048 (1149)
.+++++..+..+++.|.|.+....+.+++.+.-+++.|.+|.++++.|...| ....++. |..++|.|+++.
T Consensus 157 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~f~~~~--~~~~~~~~~g~~~~~~G~~~~ 229 (780)
T 1gm5_A 157 FKLNDLLPGEKVTTQGKIVSVETKKFQNMNILTAVLSDGLVHVPLKWFNQDY--LQTYLKQLTGKEVFVTGTVKS 229 (780)
T ss_dssp CCSSCCCSSCCCEEEECCCCCEEEECSSCEEEEEEECCSSCCEEEEECSCCT--THHHHHTTCSSCEEEEEEECS
T ss_pred CcHHHcCCCCEEEEEEEEEEEEeecCCCCeEEEEEEEECCceEEEEEECcHH--HHhhCccCCCCEEEEEEEEEE
Confidence 3456665556889999998876544333356678999999999999998655 3456777 999999999975
No 79
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=80.99 E-value=2.5 Score=51.46 Aligned_cols=75 Identities=21% Similarity=0.199 Sum_probs=55.6
Q ss_pred CCceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchH-----HHHHHHhhccCCcEEEEEEEEEeec--------
Q psy9396 984 TYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQ-----LYEKNKNILKENELLIVSGKVLEDR-------- 1050 (1149)
Q Consensus 984 ~~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~-----~y~~~~~~l~~~~~v~v~G~v~~~~-------- 1050 (1149)
+.+|+++|+|.++|. + .|+.|.|.+|.+.+++-++ .|+.. ..+..+.+|.|+|.|..+.
T Consensus 24 g~~V~l~GwV~~~R~-----~--~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~-~~l~~e~~V~V~G~v~~~~~~~~n~~~ 95 (617)
T 4ah6_A 24 GQEVTLCGWIQYRRQ-----N--TFLVLRDFDGLVQVIIPQDESAASVKKIL-CEAPVESVVQVSGTVISRPAGQENPKM 95 (617)
T ss_dssp TCEEEEEEEECCCCT-----T--TEEEEECSSCEEEEECCCSSSSHHHHHHH-HHCCSSCEEEEEEEEEECSTTCCCTTS
T ss_pred CCEEEEEEEeeeecC-----e--EEEEEEeCCcCEEEEEeCCcCcHHHHHHH-hcCCCCCEEEEEEEEEeCCccccCccC
Confidence 348999999987752 2 4999999999999998763 34444 4588899999999998631
Q ss_pred cCCceEEEEccccccH
Q psy9396 1051 FLKNIRINAEKIFDIN 1066 (1149)
Q Consensus 1051 ~~~~~~ii~~~i~~l~ 1066 (1149)
..|.+.+.++++.-|.
T Consensus 96 ~tgeiEl~~~~i~vL~ 111 (617)
T 4ah6_A 96 PTGEIEIKVKTAELLN 111 (617)
T ss_dssp TTTTEEEEEEEEEEEE
T ss_pred CCCcEEEEEeEEEEee
Confidence 1246778887776554
No 80
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=75.63 E-value=5.7 Score=40.94 Aligned_cols=79 Identities=8% Similarity=0.112 Sum_probs=56.2
Q ss_pred CCCceEEEEEEEeeeEee-ecCCc---EEEEEEEeCC-----ceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeeccCC
Q psy9396 983 PTYSCTVSGIITELKLKT-TYRGK---ILIIVIDDNS-----NSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLK 1053 (1149)
Q Consensus 983 ~~~~v~v~G~I~~vk~~~-TK~G~---mafltleD~t-----g~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~~~ 1053 (1149)
.+..|-++|+|+..+.++ |++|. ++.++|-|.+ ..+.+.+|.+..+..=.....|.++++.. ++...+++
T Consensus 41 ~g~~VNviGVVvd~~~P~~S~rGtkD~~~TltI~D~S~~~~~~gL~v~iF~~~~e~LP~V~~~GDIIlL~r-vkiq~~~g 119 (187)
T 1qzg_A 41 KNTIVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGNDLPVIKQVGQPLLLHQ-ITLRSYRD 119 (187)
T ss_dssp SCEEEEEEEEEEEEEEEEECSSTTCCEEEEEEEECTTSCTTSCCEEEEEEESSSSCSCCCCSTTCEEEEEE-EEEEEETT
T ss_pred CCCEEEEEEEEEEccCceecCCCCccEEEEEEEEeCCCCCCCCceEEEEECCChhhCCCCCCCCCEEEEEE-EEEEEECC
Confidence 344789999999998874 43662 5589999977 16999999876665555557788888763 33334678
Q ss_pred ceEEEEccc
Q psy9396 1054 NIRINAEKI 1062 (1149)
Q Consensus 1054 ~~~ii~~~i 1062 (1149)
.++.+...-
T Consensus 120 ~~~~v~~~~ 128 (187)
T 1qzg_A 120 RTQGLSKDQ 128 (187)
T ss_dssp EEEEEEEEE
T ss_pred eEEEEEcCc
Confidence 888876654
No 81
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=74.80 E-value=10 Score=41.10 Aligned_cols=64 Identities=16% Similarity=0.325 Sum_probs=49.8
Q ss_pred ceEEEEEEEeeeEeeecCC-cEEEEEEE--e------------CCceEEEEEchHHH-HHHHhhccCCcEEEEEEEEEee
Q psy9396 986 SCTVSGIITELKLKTTYRG-KILIIVID--D------------NSNSVEVIINNQLY-EKNKNILKENELLIVSGKVLED 1049 (1149)
Q Consensus 986 ~v~v~G~I~~vk~~~TK~G-~mafltle--D------------~tg~ie~vvFp~~y-~~~~~~l~~~~~v~v~G~v~~~ 1049 (1149)
++.+.|-+.+...+.|. | .++-++|- . .|.-+.+++|.+.+ +.+...|++|..|.|+|+++.+
T Consensus 148 kV~LiGrL~DPElR~t~-G~~Va~FslAv~~~~~~~~~~e~~~~Tdw~~Vv~wgk~~~AEi~~~L~KG~~V~VeGrL~tr 226 (257)
T 4dni_A 148 SVTLVGVVHDIQSGFVY-EDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCVNGRLRLS 226 (257)
T ss_dssp EEEEEEEEEEEEEEEET-TEEEEEEEEEEEEEECCCTTCSCEEEEEEEEEEEESHHHHHHHHHHCCTTCEEEEEEEEEEE
T ss_pred EEEEEEEcCCCEEEEeC-CcEEEEEEEEECCCccCCCCceEccceEEEEEEEECCccHHHHHhhCCCCCEEEEEEEEEee
Confidence 78899988777888888 9 67754442 1 34578999999983 3377779999999999999976
Q ss_pred c
Q psy9396 1050 R 1050 (1149)
Q Consensus 1050 ~ 1050 (1149)
.
T Consensus 227 ~ 227 (257)
T 4dni_A 227 P 227 (257)
T ss_dssp E
T ss_pred e
Confidence 4
No 82
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=73.88 E-value=17 Score=38.69 Aligned_cols=103 Identities=14% Similarity=0.091 Sum_probs=65.0
Q ss_pred ccccccCC---CCceEEEEEEEeeeE---eeec-CC-c--EEEEEEEeCCc-eEEEEEchHHHHHHHhhccCCcEEEEEE
Q psy9396 976 IYLSELKP---TYSCTVSGIITELKL---KTTY-RG-K--ILIIVIDDNSN-SVEVIINNQLYEKNKNILKENELLIVSG 1044 (1149)
Q Consensus 976 ~~i~~l~~---~~~v~v~G~I~~vk~---~~TK-~G-~--mafltleD~tg-~ie~vvFp~~y~~~~~~l~~~~~v~v~G 1044 (1149)
+++++|.+ +..+-|+|+|+++.. ..+| +| . ..-++|.|.+| .+.+++|.+.-..+. ...+.++.++|
T Consensus 127 ~~i~~i~~~~~~~~vDViG~V~~v~~~~~~~~k~~g~~~~~r~~~l~D~sg~~i~~tLWg~~a~~~~--~~~~~vv~i~~ 204 (246)
T 1jmc_A 127 TGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFD--GSRQPVLAIKG 204 (246)
T ss_dssp CCGGGGGGSCTTCEEEEEEEEEEECCCEEEEETTTTEEEEEEEEEEECTTCCEEEEEEEHHHHHHCC--CTTCCEEEEEE
T ss_pred EEHHHHhcccCCCceeEEEEEEEecCeEEEEEecCCCccEEEEEEEECCCCCEEEEEEEchhhhhcc--cCCCCEEEEEE
Confidence 45555543 236889999998755 4555 46 3 44789999999 599999999777665 46677777766
Q ss_pred EEEeeccCCceEEEEccccccHHHHHhcCcEEEEEecCc-chHHHHHHHHHh
Q psy9396 1045 KVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRT-FNISILKKILLR 1095 (1149)
Q Consensus 1045 ~v~~~~~~~~~~ii~~~i~~l~~~~~~~~~~l~i~l~~~-~~l~~l~~il~~ 1095 (1149)
-.-. ++ ++.++.+.. ...+ .++++ ....+|+.....
T Consensus 205 ~~v~-~f-~g~~ls~~~-----------~s~i--~inpd~pe~~~l~~w~~~ 241 (246)
T 1jmc_A 205 ARVS-DF-GGRSLSVLS-----------SSTI--IANPDIPEAYKLRGWFDA 241 (246)
T ss_dssp EEEE-CT-TSSEEECCS-----------SCEE--ESSCCSHHHHHHHHHHHH
T ss_pred EEEE-ec-CCeEEEecC-----------cceE--EECCCCHHHHHHHHHHHh
Confidence 5443 35 455554321 2223 34444 446667776654
No 83
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=73.71 E-value=18 Score=35.86 Aligned_cols=64 Identities=17% Similarity=0.333 Sum_probs=48.4
Q ss_pred ceEEEEEEEeeeEeeecCC-cEEEEEEE-eC---------CceEEEEEc-hHHHHHHHhhccCCcEEEEEEEEEeec
Q psy9396 986 SCTVSGIITELKLKTTYRG-KILIIVID-DN---------SNSVEVIIN-NQLYEKNKNILKENELLIVSGKVLEDR 1050 (1149)
Q Consensus 986 ~v~v~G~I~~vk~~~TK~G-~mafltle-D~---------tg~ie~vvF-p~~y~~~~~~l~~~~~v~v~G~v~~~~ 1050 (1149)
++++.|.+++.....|- + ..+-++|. |. +..+.+.|| ++.-+..++.+++|..|+|+|+++.+.
T Consensus 46 ~VvLmGRvtdpq~ry~~-~~~Va~FtLAV~~~~~r~ge~~tdf~~V~vfGg~lAE~i~~ylkkG~rVlVeGRLrmn~ 121 (148)
T 3stb_C 46 HCVMLGVVQNIQEGFVF-EDKVLQFTLITDFEGPSPGDPDKDFHTVRVFDSDYSSRVKEQLRDGEWFLVTGRLRMVP 121 (148)
T ss_dssp EEEEEEEEEEEEEEEET-TEEEEEEEEEEECSSCCTTSCSEEEEEEEECSHHHHHHHHHHCCTTCEEEEEEEEEEEE
T ss_pred eEEEEEEecCccccccC-CCcEEEEEEEEecCCCCCCCCccceEEEEEECChHHHHHHHHhcCCCEEEEEEEEEcce
Confidence 78899999988887663 4 45533322 22 224889999 688888999999999999999999753
No 84
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=73.69 E-value=1.9 Score=54.00 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=40.3
Q ss_pred cccccCCccHHHHHHHHHHHh-cCCCCCHHHHHhhcccCCCCHHHHHHHH
Q psy9396 834 GLGAIKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLI 882 (1149)
Q Consensus 834 gl~~Ikgvg~~~~~~i~~~r~-~g~f~~~~df~~r~~~~~~~~~~le~Li 882 (1149)
-|..|+|||+..|+.|++.|+ +|+|+|..|+.+- ..+..++++.+.
T Consensus 509 ~L~~v~GiG~~~A~~Iv~yR~~~G~f~sr~~L~~V---~giG~k~~ekl~ 555 (785)
T 3bzc_A 509 LLARISGLNSTLAQNIVAHRDANGAFRTRDELKKV---SRLGEKTFEQAA 555 (785)
T ss_dssp HHHTSTTCCHHHHHHHHHHHHHHCCCSSGGGGGGS---TTCCHHHHHHHG
T ss_pred HHhhcCCCCHHHHHHHHHHHHhcCCCCCHHHHHhc---CCCCHHHHHHhh
Confidence 478899999999999999998 8999999999644 568888998864
No 85
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=71.30 E-value=16 Score=39.68 Aligned_cols=80 Identities=14% Similarity=0.272 Sum_probs=56.8
Q ss_pred ceEEEEEEEeeeEeeecCCcEEEEEE--E--e-----CCc-eEEEEEch-HHHHHHHhhccCCcEEEEEEEEEeec-cCC
Q psy9396 986 SCTVSGIITELKLKTTYRGKILIIVI--D--D-----NSN-SVEVIINN-QLYEKNKNILKENELLIVSGKVLEDR-FLK 1053 (1149)
Q Consensus 986 ~v~v~G~I~~vk~~~TK~G~mafltl--e--D-----~tg-~ie~vvFp-~~y~~~~~~l~~~~~v~v~G~v~~~~-~~~ 1053 (1149)
.+.+.|-++.-..+-|.+|.++.+++ . + .+. -+.+++|- +.-+.+...+++|..|+|+|+++..+ .+|
T Consensus 32 ~viLiGrLtrdElRyT~~g~~a~~~lav~~~~~~~ge~~~df~~vv~wg~k~AE~~~~yl~kG~~V~VeGrL~~~~~~dG 111 (257)
T 4dni_A 32 HCVMLGVVQNIQEGFVFEDKVLQFTLITDFEGPSPGDPDKDFHTVRVFDSDYSSRVKEQLRDGEWFLVTGRLRMVPQYDG 111 (257)
T ss_dssp EEEEEEEEEEEEEEEETTEEEEEEEEEEECCCCCSSCCCEEEEEEEECSHHHHHHHHHHCCTTCEEEEEEEEEEEEEECS
T ss_pred EEEEEEEEeceEEEECCCCCEEEEEEEEEecCCCCCCCcccEEEEEEECCHHHHHHHHhccCCCEEEEEEEEEEeECCCC
Confidence 78888988877556777775553333 1 1 122 34555999 88899999999999999999998621 122
Q ss_pred ----ceEEEEcccccc
Q psy9396 1054 ----NIRINAEKIFDI 1065 (1149)
Q Consensus 1054 ----~~~ii~~~i~~l 1065 (1149)
...+++.++.++
T Consensus 112 ~kr~~~evva~~v~~~ 127 (257)
T 4dni_A 112 SMRKYYHYPVIQVHPG 127 (257)
T ss_dssp SSSSEEEEEEEEECTT
T ss_pred CcEEEEEEEEEEEEec
Confidence 346889998884
No 86
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A
Probab=70.96 E-value=14 Score=38.60 Aligned_cols=56 Identities=9% Similarity=0.186 Sum_probs=39.1
Q ss_pred ceEEEEEEEeeeEe-eecCC-cEEEEEEEeCCc---eEEEEEchHHHHHHHhhccCCcEEEE
Q psy9396 986 SCTVSGIITELKLK-TTYRG-KILIIVIDDNSN---SVEVIINNQLYEKNKNILKENELLIV 1042 (1149)
Q Consensus 986 ~v~v~G~I~~vk~~-~TK~G-~mafltleD~tg---~ie~vvFp~~y~~~~~~l~~~~~v~v 1042 (1149)
..+++|+|.+.-.+ .|++| ++++.++.|.++ .+++.+|.+.|++|-. +.+|.+|.|
T Consensus 57 dwv~~GVV~~Ks~pk~~~~gk~y~~w~l~DL~~~~~~V~lfLFg~a~~~~~k-~~~G~Viai 117 (200)
T 3ebe_A 57 DWVTFGVIVKKITPQSSNNGKTFSIWRLNDLKDLDKYISLFLFGDVHKEHWK-TDQGTVIGL 117 (200)
T ss_dssp CEEEEEEEEEEECC-------CCEEEEEECSSSTTCCEEEEECHHHHHHHTT-CCTTEEEEE
T ss_pred CEEEEEEEEecCCccCcCCCCeEEEEEEEecCCCCcEEEEEEechHHHHhcC-cCCceEEEE
Confidence 56777888776555 56678 678888877655 6999999999999764 677877765
No 87
>2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens}
Probab=69.66 E-value=6.3 Score=42.44 Aligned_cols=60 Identities=17% Similarity=-0.014 Sum_probs=43.8
Q ss_pred CCCccccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhCCCee
Q psy9396 1 MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63 (1149)
Q Consensus 1 m~~~fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~GIKp 63 (1149)
|.++++|.|+|-... .....++++++++++.|...+.++-. ..-.+....+.|++++..+
T Consensus 2 ~~m~~iD~H~Hl~~~--~~~~~~~~~l~~~~~~Gv~~~v~~~~-~~~~~~~~~~l~~~~~~~i 61 (272)
T 2y1h_A 2 MGVGLVDCHCHLSAP--DFDRDLDDVLEKAKKANVVALVAVAE-HSGEFEKIMQLSERYNGFV 61 (272)
T ss_dssp CCCCEEEEEECTTSG--GGTTTHHHHHHHHHHTTEEEEEECCS-SGGGHHHHHHHHHHTTTTE
T ss_pred CCCcEEEEeeCCCch--hhhcCHHHHHHHHHHCCCCEEEEeCC-CHHHHHHHHHHHHHCCCCE
Confidence 566799999998654 22357999999999999988776532 2445566777788876433
No 88
>1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP: c.1.9.12
Probab=68.12 E-value=7.7 Score=41.32 Aligned_cols=57 Identities=16% Similarity=0.108 Sum_probs=40.7
Q ss_pred CCCccccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhCC
Q psy9396 1 MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60 (1149)
Q Consensus 1 m~~~fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~G 60 (1149)
|.++++|.|+|-...-. ..+++++++++++.|.+.+.+.=. .........+.|++.+
T Consensus 1 ~~m~~iD~H~Hl~~~~~--~~~~~~~l~~~~~~Gv~~~v~~~~-~~~~~~~~~~l~~~~~ 57 (259)
T 1zzm_A 1 MICRFIDTHCHFDFPPF--SGDEEASLQRAAQAGVGKIIVPAT-EAENFARVLALAENYQ 57 (259)
T ss_dssp CCCCEEESCBCTTSTTT--TTCHHHHHHHHHHTTEEEEEEECC-SGGGHHHHHHHHHHCT
T ss_pred CCceEEEeeecCCchhh--ccCHHHHHHHHHHcCCCEEEEecC-CHHHHHHHHHHHHhCC
Confidence 66679999999876522 347999999999999988765421 2344556666777754
No 89
>3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei}
Probab=66.34 E-value=15 Score=37.15 Aligned_cols=65 Identities=14% Similarity=0.159 Sum_probs=45.5
Q ss_pred ceEEEEEEEee-eEeeecCCcEEEEE--EE------------eCCceEEEEEchHH-HHHHHhhccCCcEEEEEEEEEee
Q psy9396 986 SCTVSGIITEL-KLKTTYRGKILIIV--ID------------DNSNSVEVIINNQL-YEKNKNILKENELLIVSGKVLED 1049 (1149)
Q Consensus 986 ~v~v~G~I~~v-k~~~TK~G~maflt--le------------D~tg~ie~vvFp~~-y~~~~~~l~~~~~v~v~G~v~~~ 1049 (1149)
.|.++|-+..- ..+.|. ..++-++ .. ..+..+.|++|-+. -+.+...+++|..|+|+|+++.+
T Consensus 24 kViLiGrLg~DPElR~t~-~~Va~fsLAt~~r~~~~~~ge~~~~Tdw~~Vv~wgk~lAE~~~~yL~KGs~V~VeGrL~tr 102 (164)
T 3k81_C 24 SVTLVGVVHDIQSGFVYE-DAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCVNGRLRLS 102 (164)
T ss_dssp EEEEEEEEECCCCEESSS-CEECCEEEEECCC--------CCCCCEEEEEEECCHHHHHHHHHHCCTTCEEEECCEEEEE
T ss_pred EEEEEEEeccCCEEEEcC-ccEEEEEEEEcCceeeCCCCcCccceEEEEEEEECCHHHHHHHhhcCCCCEEEEEEEEEee
Confidence 67888888753 333333 3233121 11 13668999999999 67778889999999999999976
Q ss_pred cc
Q psy9396 1050 RF 1051 (1149)
Q Consensus 1050 ~~ 1051 (1149)
.+
T Consensus 103 ~w 104 (164)
T 3k81_C 103 PQ 104 (164)
T ss_dssp CC
T ss_pred eE
Confidence 43
No 90
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=65.06 E-value=10 Score=44.39 Aligned_cols=77 Identities=19% Similarity=0.241 Sum_probs=52.5
Q ss_pred ccccccCC---CCceEEEEEEEeeeE---eeec-CC-c--EEEEEEEeCCc-eEEEEEchHHHHHHHh--hccCCcEEEE
Q psy9396 976 IYLSELKP---TYSCTVSGIITELKL---KTTY-RG-K--ILIIVIDDNSN-SVEVIINNQLYEKNKN--ILKENELLIV 1042 (1149)
Q Consensus 976 ~~i~~l~~---~~~v~v~G~I~~vk~---~~TK-~G-~--mafltleD~tg-~ie~vvFp~~y~~~~~--~l~~~~~v~v 1042 (1149)
+++++|.. +..+-|+|+|+++.. +.+| +| . ..-++|.|.+| .+.+++|.+.-+.+.. ....+.+|.+
T Consensus 122 ~~i~~i~~~~~~~~vDViG~V~~v~~~~~i~~k~~g~~~~kr~i~L~D~sg~~i~~tLWg~~A~~f~~~~~~~~~~VV~i 201 (444)
T 4gop_C 122 VRINELESVEANQQCDVIGILDSYGELSEIVSKASQRPVQKRELTLVDQGNRSVKLTLWGKTAETFPTNAGVDEKPVLAF 201 (444)
T ss_dssp CCGGGGGGSCSSCCCBEEEEEEEECCCEEECCTTTCSCEEEEEEEEECTTCBEEEEEEEHHHHHTSTTSTTSSSCCEEEE
T ss_pred cCHHHHhccCCCCceEEEEEEEEcCCcEEEEEccCCceeeEEEEEEEeCCCCEEEEEEEhhhhhhhhhhhccCCCCEEEE
Confidence 45566543 236788999998854 4455 46 3 34799999999 9999999998776652 2556778877
Q ss_pred EEEEEeeccCC
Q psy9396 1043 SGKVLEDRFLK 1053 (1149)
Q Consensus 1043 ~G~v~~~~~~~ 1053 (1149)
+|-.-. +++|
T Consensus 202 ~~~kV~-~f~G 211 (444)
T 4gop_C 202 KGVKVG-DFGG 211 (444)
T ss_dssp ESCEEE-CTTS
T ss_pred EeEEEe-ecCC
Confidence 764333 3444
No 91
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=63.50 E-value=5.2 Score=51.55 Aligned_cols=51 Identities=14% Similarity=0.144 Sum_probs=43.3
Q ss_pred cccccCCccHHHHHHHHHHH-h-cCCCCCHHHHHhhcccCCCCHHHHHHHHHcCCCCC
Q psy9396 834 GLGAIKGTGKSTIEAIVTER-K-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889 (1149)
Q Consensus 834 gl~~Ikgvg~~~~~~i~~~r-~-~g~f~~~~df~~r~~~~~~~~~~le~Li~~Gafd~ 889 (1149)
-|..|.|||+..|+.|++.| + +|+|+|..|+.+- +.+..++++++ +|.+..
T Consensus 718 lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~~v---~~iG~k~fe~~--agflrI 770 (1030)
T 3psf_A 718 ALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLITH---NILHKTIFMNS--AGFLYI 770 (1030)
T ss_dssp TGGGSTTCCHHHHHHHHHHHHHTCSCCCCTTHHHHT---TSSCHHHHHHH--TTTEEC
T ss_pred HHhhCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHhc---CCccHHHHHhc--cCeEEE
Confidence 57899999999999999999 4 8999999999864 56899999987 555543
No 92
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1}
Probab=59.22 E-value=9.6 Score=42.83 Aligned_cols=58 Identities=21% Similarity=0.092 Sum_probs=45.2
Q ss_pred CCCccccccccccCchhhc--------cccHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhC
Q psy9396 1 MIPQFIHLRLHSEYSIIDG--------LLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNK 59 (1149)
Q Consensus 1 m~~~fv~LHvHS~ySlldg--------~~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~ 59 (1149)
|.++|+|-|||-.+.-..| ....++++++|++.|...+.++=- ++-.+.+..+.|+++
T Consensus 24 ~~m~~iDtH~HL~~~~f~g~y~gk~~h~~d~~~vl~rA~~aGV~~ii~~g~-~~~~~~~~~~La~~~ 89 (325)
T 3ipw_A 24 MAQQFIDIGANLTDDNYFGNYHGKHYHEEDIDVVLQRAERNGLSHIIITSG-CLNDFKKAIEIINKY 89 (325)
T ss_dssp CCCCEEEEEECTTSGGGGTEETTEECSCCCHHHHHHHHHHTTEEEEEECCC-SHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCchHhccccccccccccCHHHHHHHHHHcCCcEEEEccC-CHHHHHHHHHHHHHC
Confidence 4467999999988775533 467999999999999998887642 466677777788775
No 93
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=58.73 E-value=7.1 Score=51.17 Aligned_cols=51 Identities=14% Similarity=0.144 Sum_probs=43.4
Q ss_pred cccccCCccHHHHHHHHHHH-h-cCCCCCHHHHHhhcccCCCCHHHHHHHHHcCCCCC
Q psy9396 834 GLGAIKGTGKSTIEAIVTER-K-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889 (1149)
Q Consensus 834 gl~~Ikgvg~~~~~~i~~~r-~-~g~f~~~~df~~r~~~~~~~~~~le~Li~~Gafd~ 889 (1149)
=|..|.|||+..|+.|++.| + +|+|+|..|+.+- ..+..++++++ +|.+..
T Consensus 715 lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~~v---~~iG~k~fe~~--agflrI 767 (1219)
T 3psi_A 715 ALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLITH---NILHKTIFMNS--AGFLYI 767 (1219)
T ss_dssp TGGGSTTCCHHHHHHHHHHHHHHCSCCCCTTHHHHT---TCSCHHHHHHH--GGGEEC
T ss_pred HHHhCCCCCHHHHHHHHHHHHHhCCCCCCHHHHhhC---CCccHHHHHhc--cccEEE
Confidence 57899999999999999999 4 8999999999864 56889999987 555543
No 94
>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida}
Probab=55.91 E-value=11 Score=41.36 Aligned_cols=53 Identities=13% Similarity=0.036 Sum_probs=39.2
Q ss_pred ccccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhC
Q psy9396 4 QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNK 59 (1149)
Q Consensus 4 ~fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~ 59 (1149)
+++|-|||-... +-....++++++|++.|...+.++= .++-.+.+..+.|+++
T Consensus 2 ~~iD~H~HL~~~--~~~~d~~~vl~~a~~~gV~~~v~~g-~~~~~~~~~~~la~~~ 54 (287)
T 3rcm_A 2 QLIDIGVNLTNS--SFHDQQAAIVERALEAGVTQMLLTG-TSLAVSEQALELCQQL 54 (287)
T ss_dssp CEEEEEECTTCG--GGTTCHHHHHHHHHHTTEEEEEECC-CSHHHHHHHHHHHHHH
T ss_pred ceEEEeecCCch--hcccCHHHHHHHHHHcCCeEEEEec-CCHHHHHHHHHHHHhC
Confidence 589999998765 2235799999999999999988762 2344555666667654
No 95
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=55.27 E-value=16 Score=43.29 Aligned_cols=89 Identities=10% Similarity=0.134 Sum_probs=60.0
Q ss_pred hcccccccccCC--CCceEEEEEEEeeeEeeecCC-c-EEEEEEEeCCce--------E-----EEEEchHHHHHHHhhc
Q psy9396 972 QFIPIYLSELKP--TYSCTVSGIITELKLKTTYRG-K-ILIIVIDDNSNS--------V-----EVIINNQLYEKNKNIL 1034 (1149)
Q Consensus 972 ~~~~~~i~~l~~--~~~v~v~G~I~~vk~~~TK~G-~-mafltleD~tg~--------i-----e~vvFp~~y~~~~~~l 1034 (1149)
.+..++|+++.. +..+-++|+|+....++..+| . ++-++|-|.+-. + .+.+|.+..+..-...
T Consensus 35 ~y~y~~L~~a~~~~~~~VnviGVVvd~~~P~~T~G~D~~~t~tI~D~S~~~~~~~~~Gl~~~~~~v~iF~~~~e~LP~V~ 114 (495)
T 1jb7_A 35 KYEYVELAKASLTSAQPQHFYAVVIDATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFEDLPIIH 114 (495)
T ss_dssp -CCBCCTTTSCSSCCSCEEEEEEEEEECCCEECSSSCEEEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEESSGGGSCCCC
T ss_pred CCccEEHHHHHhccCCeEEEEEEEeecCCceecCCCeEEEEEEEEeCCCCcccccccccccCceEEEEECCChHHCCCCC
Confidence 344567776643 448899999999987754456 4 668999995543 5 8999977655444333
Q ss_pred cCCcEEEEE-EEEEeeccCCceEEEEccc
Q psy9396 1035 KENELLIVS-GKVLEDRFLKNIRINAEKI 1062 (1149)
Q Consensus 1035 ~~~~~v~v~-G~v~~~~~~~~~~ii~~~i 1062 (1149)
..|.+|++. .+++ .++|..+.++..-
T Consensus 115 ~~GDII~LhrvkIq--~~ng~~~~v~~~~ 141 (495)
T 1jb7_A 115 RAGDIIRVHRATLR--LYNGQRQFNANVF 141 (495)
T ss_dssp EETCEEEEEEEEEE--EETTEEEEEEETT
T ss_pred CCCCEEEEEEEEEE--EECCcEEEEecCC
Confidence 678888884 4444 3678888777643
No 96
>3or1_C Sulfite reductase GAMA; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} SCOP: d.203.1.1 PDB: 3or2_C* 2v4j_C* 2xsj_C*
Probab=53.10 E-value=8.5 Score=35.97 Aligned_cols=47 Identities=19% Similarity=0.498 Sum_probs=34.6
Q ss_pred CCchHhHHHHHHHHhCcccEEEEEecccchhhhHHHHHHHhcCCCHHHHHHHHccCCCCCC
Q psy9396 410 PEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPG 470 (1149)
Q Consensus 410 ~~~R~~vi~yv~~kYG~~~Va~I~Tf~t~~ak~airdv~r~lg~~~~~~~~i~k~ip~~~~ 470 (1149)
.+..-+||+||++-|=+..++- ++|.+++.+|.+. ..+-++.|..|.
T Consensus 43 Te~HW~vI~flR~yY~e~~~~P-----------~iR~l~K~~~~~~---k~Ly~LFP~gPa 89 (105)
T 3or1_C 43 SADHQKIIDFLQDYYKANGIAP-----------MVRILSKNTGFAL---KEIYELFPSGPG 89 (105)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCC-----------CHHHHHHHHCCCH---HHHHHHCTTCTT
T ss_pred CHHHHHHHHHHHHHHHHHCCCC-----------cHHHHHHHHCcCH---HHHHHHCCCCHH
Confidence 4566899999999875433322 6999999999974 456678887765
No 97
>1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.1.9.12
Probab=52.57 E-value=21 Score=37.92 Aligned_cols=57 Identities=21% Similarity=0.092 Sum_probs=37.8
Q ss_pred CCCccccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhCC
Q psy9396 1 MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60 (1149)
Q Consensus 1 m~~~fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~G 60 (1149)
|.++++|-|+|-...-. ...++++++++++.|...+.+.=. .........+.|++++
T Consensus 1 ~~m~~iD~H~Hl~~~~~--~~~~~~~l~~~~~~Gv~~~v~~~~-~~~~~~~~~~l~~~~~ 57 (264)
T 1xwy_A 1 MEYRMFDIGVNLTSSQF--AKDRDDVVACAFDAGVNGLLITGT-NLRESQQAQKLARQYS 57 (264)
T ss_dssp ----CEEEEECTTSGGG--TTTHHHHHHHHHHTTCCEEEECCC-SHHHHHHHHHHHHHST
T ss_pred CCCcEEEEeeCCCChhh--ccCHHHHHHHHHHCCCCEEEEeCC-CHHHHHHHHHHHHhCC
Confidence 55669999999765422 246899999999999998765422 2344555666777764
No 98
>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens}
Probab=47.32 E-value=17 Score=39.85 Aligned_cols=56 Identities=23% Similarity=0.239 Sum_probs=41.2
Q ss_pred ccccccccccCchhhcc--------ccHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhCC
Q psy9396 4 QFIHLRLHSEYSIIDGL--------LRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60 (1149)
Q Consensus 4 ~fv~LHvHS~ySlldg~--------~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~G 60 (1149)
+++|.|+|-.....++. ..+++++++|++.|...+.++=. +...+....+.|++++
T Consensus 2 ~~iD~H~Hl~~~~~~~~~~~~~~h~~d~~~vl~~~~~~GV~~~v~~~~-~~~~~~~~~~la~~~~ 65 (301)
T 2xio_A 2 KFIDIGINLTDPMFRGIYRGVQKHQDDLQDVIGRAVEIGVKKFMITGG-NLQDSKDALHLAQTNG 65 (301)
T ss_dssp CEEEEEECTTCGGGGTEETTEECSCCCHHHHHHHHHHHTEEEEEECCC-SHHHHHHHHHHHTTCT
T ss_pred eEEEEcCCCCChHhcccccccccCccCHHHHHHHHHHCCCCEEEEeCC-CHHHHHHHHHHHHHCC
Confidence 58999999877655543 57899999999999999888732 3444555666676654
No 99
>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.50A {Saccharomyces cerevisiae}
Probab=46.79 E-value=20 Score=41.44 Aligned_cols=56 Identities=13% Similarity=0.121 Sum_probs=47.5
Q ss_pred CccccccccccCchhhcc--------ccHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhC
Q psy9396 3 PQFIHLRLHSEYSIIDGL--------LRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNK 59 (1149)
Q Consensus 3 ~~fv~LHvHS~ySlldg~--------~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~ 59 (1149)
++|+|.|||-..+..+|. ..+++++++|++.|...+-+|= .++-.+.+..+.|+++
T Consensus 12 ~~~iDih~nL~d~~f~g~y~~~~~h~~D~~~vl~rA~~~GV~~ii~~g-~~l~~s~~~~~La~~~ 75 (401)
T 3e2v_A 12 LKYYDIGLNLTDPMFHGIYNGKQYHPADYVKLLERAAQRHVKNALVTG-SSIAESQSAIELVSSV 75 (401)
T ss_dssp CCEEEEEECTTSGGGGTEETTEECSCCCHHHHHHHHHHTTEEEEEECC-CSHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCcCcHHHhhhccccccCccCHHHHHHHHHHCCCCEEEEec-CCHHHHHHHHHHHHHC
Confidence 579999999998877763 6899999999999999999884 3577778888888875
No 100
>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} SCOP: c.1.9.0
Probab=42.56 E-value=13 Score=40.12 Aligned_cols=49 Identities=14% Similarity=0.093 Sum_probs=38.5
Q ss_pred ccccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhC
Q psy9396 4 QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNK 59 (1149)
Q Consensus 4 ~fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~ 59 (1149)
+++|-|||=.+. ...++++++|++.|...+.++ .++..+....+.|+++
T Consensus 2 ~liDtH~HL~~~-----~d~~~vl~~a~~~gV~~i~v~--~~~~~~~~~~~la~~~ 50 (254)
T 3gg7_A 2 SLIDFHVHLDLY-----PDPVAVARACEERQLTVLSVT--TTPAAWRGTLALAAGR 50 (254)
T ss_dssp CCEEEEECGGGS-----SSHHHHHHHHHHTTCEEEECC--SSGGGHHHHHGGGTTC
T ss_pred ceEEEeeCCCCC-----CCHHHHHHHHHHCCCcEEEec--CCHHHHHHHHHHHHhC
Confidence 489999997654 389999999999999987763 4566677777777765
No 101
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=39.54 E-value=33 Score=32.19 Aligned_cols=70 Identities=20% Similarity=0.317 Sum_probs=51.5
Q ss_pred CCceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeeccCCceEEEEcccc
Q psy9396 984 TYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063 (1149)
Q Consensus 984 ~~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~~~i~ 1063 (1149)
+..|.+=|.|+..- ++. -..+.|.||+|.+-|=++.|. ..-+..+..|.|.|+|+.+. ....|=|++|.
T Consensus 37 d~~V~L~G~Iv~~~-----~~d--~Y~F~D~TG~I~VeId~~~w~--g~~v~p~~~Vri~GevDkd~--~~~eIdV~~i~ 105 (109)
T 1nnx_A 37 DTWVTLRGNIVERI-----SDD--LYVFKDASGTINVDIDHKRWN--GVTVTPKDTVEIQGEVDKDW--NSVEIDVKQIR 105 (109)
T ss_dssp SEEEEEEEEEEEEE-----ETT--EEEEEETTEEEEEECCGGGST--TCCCCTTSCEEEEEEEEEET--TEEEEEEEEEE
T ss_pred CCeEEEEEEEEEEe-----CCC--eEEEECCCccEEEEEChhhcC--CcccCCCCEEEEEEEECCCC--CceEEEEEEEE
Confidence 34888889887432 122 156789999999999999984 55688889999999999763 45666666654
Q ss_pred c
Q psy9396 1064 D 1064 (1149)
Q Consensus 1064 ~ 1064 (1149)
-
T Consensus 106 ~ 106 (109)
T 1nnx_A 106 K 106 (109)
T ss_dssp E
T ss_pred E
Confidence 3
No 102
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=39.02 E-value=19 Score=40.47 Aligned_cols=31 Identities=26% Similarity=0.331 Sum_probs=28.5
Q ss_pred ccccCCccHHHHHHHHHHHhcCCCCCHHHHH
Q psy9396 835 LGAIKGTGKSTIEAIVTERKFGFFTNLFDFT 865 (1149)
Q Consensus 835 l~~Ikgvg~~~~~~i~~~r~~g~f~~~~df~ 865 (1149)
|..|+|||+..++.|.+.++.|.|..++++.
T Consensus 59 l~~lpGIG~~~A~kI~E~l~tG~~~~le~l~ 89 (335)
T 2bcq_A 59 ACSIPGIGKRMAEKIIEILESGHLRKLDHIS 89 (335)
T ss_dssp HHTSTTCCHHHHHHHHHHHHSSSCGGGGGCC
T ss_pred HhcCCCccHHHHHHHHHHHHcCCchHHHHHh
Confidence 7899999999999999999999999988873
No 103
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=37.71 E-value=42 Score=33.00 Aligned_cols=71 Identities=18% Similarity=0.170 Sum_probs=53.8
Q ss_pred ceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeeccCCceEEEEcccccc
Q psy9396 986 SCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065 (1149)
Q Consensus 986 ~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~~~i~~l 1065 (1149)
.|.+=|+|.+. -.|. ++|.|+||.+.+.-.++... -+..++.|..|.|-|.+... ...+-|.|-++.+|
T Consensus 60 ~VWmQG~VV~~-----~~g~---~~LdDgTG~~~v~g~~~vp~-g~p~l~~G~YVMV~G~v~~~--s~eP~i~AvKm~DL 128 (150)
T 3mxn_B 60 AVWMQGRVVMA-----DRGE---ARLRDPSGDFSVRGLERVPR-GRPCLVPGKYVMVMGVVQAC--SPEPCLQAVKMTDL 128 (150)
T ss_dssp EEEEEEEEEEE-----ETTE---EEEEETTEEEEEECGGGSCC-CSCCCSTTCEEEEEEEEEEC--SSSCEEEEEEEEEC
T ss_pred EEEEEeEEEEe-----CCCe---EEEECCCceEEEeeccccCC-CCcccCCCCEEEEEEEEEec--CCCceEEEEEeeeC
Confidence 67788999873 2233 89999999998866655433 25568899999999999874 35678888888888
Q ss_pred HH
Q psy9396 1066 NV 1067 (1149)
Q Consensus 1066 ~~ 1067 (1149)
.+
T Consensus 129 S~ 130 (150)
T 3mxn_B 129 SD 130 (150)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 104
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=37.17 E-value=36 Score=28.50 Aligned_cols=36 Identities=11% Similarity=0.257 Sum_probs=28.4
Q ss_pred ccccCCccHHHHHHHHHHHhcCCCCCHHHHHhhcccCCCCHHHHHHH
Q psy9396 835 LGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSL 881 (1149)
Q Consensus 835 l~~Ikgvg~~~~~~i~~~r~~g~f~~~~df~~r~~~~~~~~~~le~L 881 (1149)
|..|+|||+.-...+++ -|.|+.+++.. +...|..+
T Consensus 6 L~~IpGIG~kr~~~LL~-----~Fgs~~~i~~A------s~eeL~~v 41 (63)
T 2a1j_A 6 LLKMPGVNAKNCRSLMH-----HVKNIAELAAL------SQDELTSI 41 (63)
T ss_dssp HHTSTTCCHHHHHHHHH-----HCSSHHHHHTC------CHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHH-----HcCCHHHHHHC------CHHHHHHH
Confidence 67899999999999996 39999998754 45555555
No 105
>1ji8_A Dissimilatory siroheme-sulfite reductase; orthogonal helical bundle, structural genomics, PSI, protein structure initiative; NMR {Pyrobaculum aerophilum} SCOP: d.203.1.1
Probab=34.42 E-value=14 Score=34.91 Aligned_cols=60 Identities=20% Similarity=0.329 Sum_probs=41.9
Q ss_pred CchHhHHHHHHHHhCcccEEEEEecccchhhhHHHHHHHhcCCCHHHHHHHHccCCCCCCCCcchHHHhhhChHHHHHhh
Q psy9396 411 EGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIK 490 (1149)
Q Consensus 411 ~~R~~vi~yv~~kYG~~~Va~I~Tf~t~~ak~airdv~r~lg~~~~~~~~i~k~ip~~~~~~~~l~~a~~~~~~l~~~~~ 490 (1149)
+.--+||+||++-|=+.+++ -++|.+.+.++..++ ++-++.|..+.
T Consensus 50 e~HW~VI~flR~~Y~e~~~~-----------P~iR~l~K~~~~~~s---~Ly~LFP~GPa-------------------- 95 (111)
T 1ji8_A 50 EEHWKLVKYLREYWETFGTC-----------PPIKMVTKETGFSLE---KIYQLFPSGPA-------------------- 95 (111)
T ss_dssp HHHHHHHHHHHHHTTTTSCC-----------CCSTTGGGGSCCCHH---HHHHHTTSCHH--------------------
T ss_pred HHHHHHHHHHHHHHHHHCCC-----------CcHHHHHHHHHHHHH---HHHHHCCCCHH--------------------
Confidence 45578999999999764432 367888888888772 26666665432
Q ss_pred ccHHHHHHHHHHHHcccccCCcc
Q psy9396 491 NEEEVRQLIELAKQVEGIIRNVG 513 (1149)
Q Consensus 491 ~~~~~~~l~~~a~~leGl~r~~~ 513 (1149)
.-|.+|-|||+-++
T Consensus 96 ---------k~a~KiAGLPKP~~ 109 (111)
T 1ji8_A 96 ---------HGACKVAGAPKPTG 109 (111)
T ss_dssp ---------HHHHHHHTCCCCCC
T ss_pred ---------HHHHHHhcCCCCCC
Confidence 24678899998665
No 106
>2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237, structural GENO PSI, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=33.56 E-value=67 Score=33.76 Aligned_cols=54 Identities=13% Similarity=0.030 Sum_probs=37.0
Q ss_pred ccccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhCC
Q psy9396 4 QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60 (1149)
Q Consensus 4 ~fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~G 60 (1149)
|++|.|+|-... ....+++++++.+++.|...+.+.-.+ ........+.|++.+
T Consensus 1 m~iD~H~Hl~~~--~~~~~~~~~l~~~~~~Gv~~~v~~~~~-~~~~~~~~~~~~~~p 54 (265)
T 2gzx_A 1 MLIDTHVHLNDE--QYDDDLSEVITRAREAGVDRMFVVGFN-KSTIERAMKLIDEYD 54 (265)
T ss_dssp -CEEEEECTTSG--GGTTTHHHHHHHHHHTTCCEEEEEECS-HHHHHHHHHHHHHCT
T ss_pred CeEEEeeCCCCc--ccccCHHHHHHHHHHcCCCEEEEeCCC-HHHHHHHHHHHHhCC
Confidence 478999997654 223469999999999999987765443 233344556666654
No 107
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=33.55 E-value=33 Score=39.02 Aligned_cols=32 Identities=13% Similarity=0.080 Sum_probs=29.0
Q ss_pred ccccCCccHHHHHHHHHHHhcCCCCCHHHHHh
Q psy9396 835 LGAIKGTGKSTIEAIVTERKFGFFTNLFDFTK 866 (1149)
Q Consensus 835 l~~Ikgvg~~~~~~i~~~r~~g~f~~~~df~~ 866 (1149)
|..|+|||+..++.|.+.++.|.+..++++..
T Consensus 63 l~~lpGIG~~~A~kI~E~l~tG~~~~le~L~~ 94 (360)
T 2ihm_A 63 LHGLPYFGEHSTRVIQELLEHGTCEEVKQVRC 94 (360)
T ss_dssp GTTCTTCCHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHcCChHHHHHHhc
Confidence 88999999999999999999899998888754
No 108
>2kng_A Protein LSR2; DNA-binding domain, immune response, DNA binding protein; NMR {Mycobacterium tuberculosis}
Probab=32.80 E-value=24 Score=28.91 Aligned_cols=25 Identities=24% Similarity=0.522 Sum_probs=19.7
Q ss_pred HHHHHHHHhCCCcccCCCcchhHHHH
Q psy9396 347 SDFIQWAKNNSIPVGPGRGSGASSLV 372 (1149)
Q Consensus 347 ~D~v~~ak~~gi~vGpGRGSaagSlV 372 (1149)
.++=.||++||+.|.. ||=....++
T Consensus 16 ~aIR~WAr~nG~~Vsd-RGRIp~~V~ 40 (55)
T 2kng_A 16 AAIREWARRNGHNVST-RGRIPADVI 40 (55)
T ss_dssp HHHHHHHHHTTCCCCS-SSCCCHHHH
T ss_pred HHHHHHHHHcCCcCCC-CCCCCHHHH
Confidence 4678899999999965 997665554
No 109
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=32.45 E-value=17 Score=35.23 Aligned_cols=45 Identities=29% Similarity=0.276 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHhCCCc--------ccCCCcchhHHHHH---HHhcCCccCCCCCC
Q psy9396 343 FLIVSDFIQWAKNNSIP--------VGPGRGSGASSLVA---YSLSITDIDPLSYN 387 (1149)
Q Consensus 343 FLiv~D~v~~ak~~gi~--------vGpGRGSaagSlVa---Y~LgIT~vDPl~~~ 387 (1149)
.+...++.+.|++.||. .||||=||--+|-+ ...-|+||-||+||
T Consensus 62 ~~aa~~~~~~~~~~Gi~~v~V~vkG~G~Gre~airaL~~~Gl~I~~I~DvTpiPhn 117 (129)
T 2vqe_K 62 QLAALDAAKKAMAYGMQSVDVIVRGTGAGREQAIRALQASGLQVKSIVDDTPVPHN 117 (129)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEEEESCCTTHHHHHHHHHTSSSEEEECEECCCCCSS
T ss_pred HHHHHHHHHHHHHhCCeEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEcCCCCCC
Confidence 45677888888888863 35666666555555 33458999999997
No 110
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=31.44 E-value=49 Score=29.52 Aligned_cols=30 Identities=10% Similarity=0.134 Sum_probs=26.0
Q ss_pred ecccccCCccHHHHHHHHHHHhcCCCCCHHHHHhh
Q psy9396 833 YGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKR 867 (1149)
Q Consensus 833 ~gl~~Ikgvg~~~~~~i~~~r~~g~f~~~~df~~r 867 (1149)
--|..|+|||+.-...|+. -|.|+.+++..
T Consensus 18 s~L~~IpGIG~kr~~~LL~-----~FgSl~~i~~A 47 (84)
T 1z00_B 18 DFLLKMPGVNAKNCRSLMH-----HVKNIAELAAL 47 (84)
T ss_dssp HHHHTCSSCCHHHHHHHHH-----HSSCHHHHHHS
T ss_pred HHHHhCCCCCHHHHHHHHH-----HcCCHHHHHHC
Confidence 3578999999999999996 39999999766
No 111
>3ci0_K Pseudopilin GSPK; general secretory pathway, pseudopilus, type 4 pilin biogene methylation, protein transport; 2.20A {Escherichia coli} SCOP: a.60.16.1 a.60.16.1 d.24.1.6
Probab=30.83 E-value=16 Score=40.39 Aligned_cols=34 Identities=15% Similarity=0.131 Sum_probs=22.4
Q ss_pred cccc--CCccHHHHHHHHHHHhcCCCCCHHHHHhhc
Q psy9396 835 LGAI--KGTGKSTIEAIVTERKFGFFTNLFDFTKRI 868 (1149)
Q Consensus 835 l~~I--kgvg~~~~~~i~~~r~~g~f~~~~df~~r~ 868 (1149)
|.++ +|+|...|+.|++.|..++|.|+.||....
T Consensus 201 L~al~~~~i~~~~A~~ii~~R~~~gf~~v~~~~~~~ 236 (298)
T 3ci0_K 201 LEALFDPWLSPVQARALLQQRPAKGWEDVDQFLAQP 236 (298)
T ss_dssp HHHHTC-------CCHHHHTCCTTCCSCHHHHHTSG
T ss_pred HHHhcCCCCCHHHHHHHHHhcccCCCCCHHHHHhhh
Confidence 4556 799999999999999866899999998753
No 112
>4dzh_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO YORK structural genomics research consortium; 1.55A {Xanthomonas campestris PV}
Probab=29.90 E-value=44 Score=38.78 Aligned_cols=64 Identities=13% Similarity=0.200 Sum_probs=43.5
Q ss_pred CccccccccccCchhhcc---------------------ccHHHH-------HHHHHHcCCCEEEEecCCchhhHHHHHH
Q psy9396 3 PQFIHLRLHSEYSIIDGL---------------------LRINDV-------IEAAANDYQPALAITDLSNLFGIIKFYK 54 (1149)
Q Consensus 3 ~~fv~LHvHS~ySlldg~---------------------~~ieeL-------V~~Ake~G~~AlAITDH~nl~G~~~f~~ 54 (1149)
|.||+.|+|...|++.|. .+++++ +..+.+.|..++. |+. .......+
T Consensus 73 PGlID~H~Hl~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~--d~~--~~~~~~~~ 148 (472)
T 4dzh_A 73 PGLVNAHTHNPMTLLRGVADDLPLMVWLQQHIWPVEAAVIGPEFVADGTTLAIAEMLRGGTTCVN--ENY--FFADVQAA 148 (472)
T ss_dssp ECEEEEEECGGGGGGTTSSCSCCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHHHHHTTEEEEE--EEC--SCHHHHHH
T ss_pred ECccccccChhhHHhccccCCCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHhCCcEEEE--Ecc--cCHHHHHH
Confidence 569999999988776542 344443 3336778887765 654 22345567
Q ss_pred HHHhCCCeeEeeeeee
Q psy9396 55 SAYNKGIKPIIGCDVW 70 (1149)
Q Consensus 55 ~ak~~GIKpIiG~Ei~ 70 (1149)
++.+.|++.+++..+.
T Consensus 149 a~~~~g~r~~~~~~~~ 164 (472)
T 4dzh_A 149 VYKQHGFRALVGAVII 164 (472)
T ss_dssp HHHHTTCEEEEEEEEC
T ss_pred HHHHhCCeEEEEeccc
Confidence 7888999988887654
No 113
>1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center for structural genomics, nysgxrc; 1.90A {Escherichia coli} SCOP: c.1.9.12
Probab=29.09 E-value=44 Score=35.22 Aligned_cols=56 Identities=11% Similarity=0.033 Sum_probs=36.9
Q ss_pred ccccccccccCchhhc-cccHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhCC
Q psy9396 4 QFIHLRLHSEYSIIDG-LLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60 (1149)
Q Consensus 4 ~fv~LHvHS~ySlldg-~~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~G 60 (1149)
|++|.|+|-...-..+ ..+++++++.+++.|...+.+.-++ ........+.|++++
T Consensus 2 ~~iD~H~Hl~~~~~~~~~~~~~~~l~~~~~~Gv~~~v~~~~~-~~~~~~~~~~~~~~p 58 (265)
T 1yix_A 2 FLVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVATT-LPSYLHMRDLVGERD 58 (265)
T ss_dssp CEEEEEECGGGSCTTTTCSSHHHHHHHHHHTTEEEEEECCSS-HHHHHHHHHHHCSCT
T ss_pred cEEEEeeCCCchhhcccccCHHHHHHHHHHCCCCEEEEeCCC-HHHHHHHHHHHHHCC
Confidence 5899999976432211 4679999999999999987764322 223334455566553
No 114
>3vup_A Beta-1,4-mannanase; TIM barrel, digestive fluid, HYD; 1.05A {Aplysia kurodai}
Probab=28.79 E-value=63 Score=34.59 Aligned_cols=47 Identities=11% Similarity=0.003 Sum_probs=36.4
Q ss_pred ccHHHHHHHHHHcCCCEEEE---e-------------------cCCchhhHHHHHHHHHhCCCeeEeee
Q psy9396 21 LRINDVIEAAANDYQPALAI---T-------------------DLSNLFGIIKFYKSAYNKGIKPIIGC 67 (1149)
Q Consensus 21 ~~ieeLV~~Ake~G~~AlAI---T-------------------DH~nl~G~~~f~~~ak~~GIKpIiG~ 67 (1149)
..+++.++.+|++|+.+|=+ + +-.-+.....|+.+|.++||++|+-+
T Consensus 42 ~~~~~~l~~~k~~G~N~vRv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~a~~~Gi~vil~~ 110 (351)
T 3vup_A 42 NRIEPEFKKLHDAGGNSMRLWIHIQGETTPAFNDQGFVTGPDKQGTMLDDMKDLLDTAKKYNILVFPCL 110 (351)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEEETTSSSSEECTTSCEEESCSSSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHcCCcEEEECcccccccCcccccccccccccccHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 34678899999999999976 1 11235556789999999999999754
No 115
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=28.29 E-value=40 Score=33.28 Aligned_cols=48 Identities=21% Similarity=0.390 Sum_probs=35.6
Q ss_pred CCCeEEecccccCCccHHHHHHHHHHHhcCCCCCHHHHHhhcccCCCCHHHHHHHHH
Q psy9396 827 KHKKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLIN 883 (1149)
Q Consensus 827 ~~~~I~~gl~~Ikgvg~~~~~~i~~~r~~g~f~~~~df~~r~~~~~~~~~~le~Li~ 883 (1149)
++..|.++|..|+|||...|..|.+.-.-.| -.|+ +.++...++.|..
T Consensus 24 ~~k~v~~ALt~I~GIG~~~A~~I~~~~gid~-------~~r~--g~Lt~~ei~~l~~ 71 (146)
T 3u5c_S 24 GNIKIVYALTTIKGVGRRYSNLVCKKADVDL-------HKRA--GELTQEELERIVQ 71 (146)
T ss_dssp SSSCTTTTGGGSTTCCHHHHHHHHHHHTCCT-------TSCS--SSCCHHHHHHHHH
T ss_pred CCcchHhhHhhhcCCCHHHHHHHHHHcCCCC-------Ccee--ccCCHHHHHHHHH
Confidence 4578999999999999999999997653111 2333 4577777877764
No 116
>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}
Probab=28.07 E-value=1.7e+02 Score=34.33 Aligned_cols=95 Identities=16% Similarity=0.175 Sum_probs=51.3
Q ss_pred HHHHHHHhCccccccchHHHHHHH-----hhcc----cccccccCCCCceEEEEEEEee--------eEeeecCC-----
Q psy9396 947 LIEEKKVLGFCLSEHIFCIYETEI-----RQFI----PIYLSELKPTYSCTVSGIITEL--------KLKTTYRG----- 1004 (1149)
Q Consensus 947 l~~EkE~LG~yls~HPl~~~~~~l-----~~~~----~~~i~~l~~~~~v~v~G~I~~v--------k~~~TK~G----- 1004 (1149)
..+.+.+--+|.+. |...+..+ +++. ..++.++..+..++|+|+|-.- +.....++
T Consensus 51 ~~y~~QY~~iY~~R--L~~Lr~~l~~~a~~kw~~~~~i~klldl~~ge~c~viGTvyk~m~lKPsIL~eis~e~~~~~~~ 128 (476)
T 3e0j_A 51 RSFSRQYAHIYATR--LIQMRPFLENRAQQHWGSGVGVKKLCELQPEEKCCVVGTLFKAMPLQPSILREVSEEHNLLPQP 128 (476)
T ss_dssp ----------CHHH--HHHHHHHHHHHHHHHSCSCCCBCCSSSCCTTCCEEEEEEEEEEC--------------------
T ss_pred CChhHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCccchHhhcccCCCEEEEEEEEEecccCCCcHHHHHhhhhccCCCC
Confidence 34556666666654 55555544 2333 2345555555689999999632 11111110
Q ss_pred ---cE----EEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEe
Q psy9396 1005 ---KI----LIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLE 1048 (1149)
Q Consensus 1005 ---~m----afltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~ 1048 (1149)
++ -.+.|||++|++.++.+-+ ...+..|.+|.|.|+...
T Consensus 129 ~~~~y~~~~D~l~LEDesGRv~L~g~~~-----~~~lVTG~VvaV~G~~~~ 174 (476)
T 3e0j_A 129 PRSKYIHPDDELVLEDELQRIKLKGTID-----VSKLVTGTVLAVFGSVRD 174 (476)
T ss_dssp --CCCCCSSCEEEEECSSCEEEEEESCC-----TTTCCTTCEEEEEEEECT
T ss_pred ccccccCCCceEEEECCCCEEEEEEEcc-----cccccCCcEEEEEEEEcC
Confidence 11 1599999999999987321 256888999999998753
No 117
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=28.05 E-value=70 Score=28.29 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=25.2
Q ss_pred EEecccccCCccHHHHHHHHHHHhcCCCCCHHHHHhh
Q psy9396 831 IRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKR 867 (1149)
Q Consensus 831 I~~gl~~Ikgvg~~~~~~i~~~r~~g~f~~~~df~~r 867 (1149)
....|..|+|||+..+..|++. |.|+.+++..
T Consensus 17 ~~~~L~~IpgIG~~~A~~Ll~~-----fgsl~~l~~a 48 (89)
T 1z00_A 17 VTECLTTVKSVNKTDSQTLLTT-----FGSLEQLIAA 48 (89)
T ss_dssp HHHHHTTSSSCCHHHHHHHHHH-----TCBHHHHHHC
T ss_pred HHHHHHcCCCCCHHHHHHHHHH-----CCCHHHHHhC
Confidence 3457889999999999999963 7788777643
No 118
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=27.95 E-value=1e+02 Score=29.13 Aligned_cols=71 Identities=23% Similarity=0.285 Sum_probs=44.4
Q ss_pred CCCeEEecccccCCccHHHHHHHHHHHhcCCCCCHHHHHhhcccCCCCHHHHHHHHHc-CCCCCcchhHHHHHHHHHHHH
Q psy9396 827 KHKKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINS-GAFDCFNEKRYMLVASIDVAL 905 (1149)
Q Consensus 827 ~~~~I~~gl~~Ikgvg~~~~~~i~~~r~~g~f~~~~df~~r~~~~~~~~~~le~Li~~-Gafd~~~~~R~~ll~~l~~~~ 905 (1149)
++..|.++|..|+|||...+..|.+.-.-.| -.|+ +.++...++.|... .-+..=+.=|.++..+++.++
T Consensus 10 ~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~-------~~r~--~~Lt~~ei~~l~~~i~~~~ie~dLr~~~~~dI~RL~ 80 (114)
T 3r8n_M 10 DHKHAVIALTSIYGVGKTRSKAILAAAGIAE-------DVKI--SELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLM 80 (114)
T ss_dssp CSSCHHHHGGGSTTCCHHHHHHHHHHTTCCT-------TCCS--TTCCHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHH
T ss_pred CCCEeHhhHhhhcCcCHHHHHHHHHHcCcCc-------ccCc--ccCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 4578999999999999999999997643112 1233 45677777777653 112111223455666666554
Q ss_pred H
Q psy9396 906 K 906 (1149)
Q Consensus 906 ~ 906 (1149)
+
T Consensus 81 ~ 81 (114)
T 3r8n_M 81 D 81 (114)
T ss_dssp H
T ss_pred H
Confidence 4
No 119
>3h4u_A Amidohydrolase; signature of Zn ligands, structural genomics, NYSGXRC, target 9236E, PSI-2, protein structure initiative; 2.20A {Unidentified} PDB: 3hpa_A
Probab=27.92 E-value=42 Score=38.78 Aligned_cols=67 Identities=10% Similarity=0.003 Sum_probs=42.6
Q ss_pred CccccccccccCchhhcc---------------------ccHHHH-------HHHHHHcCCCEEEEe--cCCchhhHHHH
Q psy9396 3 PQFIHLRLHSEYSIIDGL---------------------LRINDV-------IEAAANDYQPALAIT--DLSNLFGIIKF 52 (1149)
Q Consensus 3 ~~fv~LHvHS~ySlldg~---------------------~~ieeL-------V~~Ake~G~~AlAIT--DH~nl~G~~~f 52 (1149)
|.||+.|+|...|.+.|. .+++++ +..+.+.|..++.-. -+.+.++....
T Consensus 87 PGlID~H~Hl~~~~~rg~~~~~~~~l~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~ 166 (479)
T 3h4u_A 87 PGLVNTHHHMYQSLTRAVPAAQNAELFGWLTNLYKIWAHLTPEMIEVSTLTAMAELLQSGCTTSSDHLYIYPNGSRLDDS 166 (479)
T ss_dssp ECEEECCCCGGGGGSCSCTTTTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTEEEEECCBCCCCTTCCHHHH
T ss_pred cceeecccccchhhhccccccCCCCHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHhCCeEEEEECccccCCcchHHHH
Confidence 469999999998876443 344443 445566787766432 11233445566
Q ss_pred HHHHHhCCCeeEeeeee
Q psy9396 53 YKSAYNKGIKPIIGCDV 69 (1149)
Q Consensus 53 ~~~ak~~GIKpIiG~Ei 69 (1149)
.+++++.|++.+++...
T Consensus 167 ~~~~~~~g~r~~~~~~~ 183 (479)
T 3h4u_A 167 IGAAQRIGMRFHASRGA 183 (479)
T ss_dssp HHHHHHHTCEEEEEEEE
T ss_pred HHHHHHcCCEEEEEeee
Confidence 77788889887766543
No 120
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=27.50 E-value=1.4e+02 Score=28.99 Aligned_cols=69 Identities=19% Similarity=0.293 Sum_probs=45.3
Q ss_pred CceEEEEEEEeeeEeeecCCcEEEEEEEeCCceEEEEEchHHHHHHHhhccCCcEEEEEEEEEeeccCCceEEEEccc
Q psy9396 985 YSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062 (1149)
Q Consensus 985 ~~v~v~G~I~~vk~~~TK~G~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~~~~~~ii~~~i 1062 (1149)
++++|.|+|..=...+...+.-.-+.+.|....+.|+ |... .-+++++|.-|+++|++..+ + .+.|++|
T Consensus 29 ~~iRvgG~V~~GSv~r~~~~~~v~F~vtD~~~~v~V~-Y~Gi---lPDlFrEGqgVVa~G~l~~~----g-~F~A~eV 97 (136)
T 1sr3_A 29 QRLRVGGMVMPGSVQRDPNSLKVTFTIYDAEGSVDVS-YEGI---LPDLFREGQGVVVQGELEKG----N-HILAKEV 97 (136)
T ss_dssp SEEEEEEEECTTTCEECSSSSEEEEEEECSSCEEEEE-EESC---CCTTCCTTSEEEEEEEECSS----S-EEEESSC
T ss_pred CEEEEeeEEeCCcEEEcCCCCEEEEEEEeCCcEEEEE-ECCC---CCccccCCCeEEEEEEECCC----C-eEEEEEE
Confidence 4899999999432233334534456667888888765 3322 12567889999999999632 2 4777776
No 121
>4dyk_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO PSI-biology, NEW YORK structural genomics research consorti hydrolase; 2.00A {Pseudomonas aeruginosa}
Probab=27.24 E-value=44 Score=38.21 Aligned_cols=64 Identities=16% Similarity=0.205 Sum_probs=42.8
Q ss_pred CccccccccccCchhhcc---------------------ccHHH-------HHHHHHHcCCCEEEEecCCchhhHHHHHH
Q psy9396 3 PQFIHLRLHSEYSIIDGL---------------------LRIND-------VIEAAANDYQPALAITDLSNLFGIIKFYK 54 (1149)
Q Consensus 3 ~~fv~LHvHS~ySlldg~---------------------~~iee-------LV~~Ake~G~~AlAITDH~nl~G~~~f~~ 54 (1149)
|.||+.|+|...|++.|. .++++ .+..+.+.|..++. |+.. ......+
T Consensus 66 PG~ID~H~H~~~~~~~g~~~~~~l~~wl~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~--d~~~--~~~~~~~ 141 (451)
T 4dyk_A 66 PGLVNAHGHSAMSLFRGLADDLPLMTWLQDHIWPAEGQWVSEDFIRDGTELAIAEQVKGGITCFS--DMYF--YPQAICG 141 (451)
T ss_dssp ECEEECCCCGGGGGGTTSSCSSCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHHHHHTTEEEEE--EECS--CHHHHHH
T ss_pred ecccchhhChhhHHhccCCCCCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHhCCcEEEE--Eccc--CHHHHHH
Confidence 569999999988876552 44443 33445588887765 4421 2345566
Q ss_pred HHHhCCCeeEeeeeee
Q psy9396 55 SAYNKGIKPIIGCDVW 70 (1149)
Q Consensus 55 ~ak~~GIKpIiG~Ei~ 70 (1149)
++++.|++.++|..+.
T Consensus 142 a~~~~g~r~~~~~~~~ 157 (451)
T 4dyk_A 142 VVHDSGVRAQVAIPVL 157 (451)
T ss_dssp HHHHHTCEEEEEEEEC
T ss_pred HHHHcCCeEEEEchhh
Confidence 7788899988887765
No 122
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=26.36 E-value=1.1e+02 Score=32.09 Aligned_cols=45 Identities=9% Similarity=0.003 Sum_probs=35.2
Q ss_pred cccHHHHHHHHHHcCCCEEEEecCC------chhhHHHHHHHHHhCCCeeE
Q psy9396 20 LLRINDVIEAAANDYQPALAITDLS------NLFGIIKFYKSAYNKGIKPI 64 (1149)
Q Consensus 20 ~~~ieeLV~~Ake~G~~AlAITDH~------nl~G~~~f~~~ak~~GIKpI 64 (1149)
..++++.++.|++.|+++|-|.-.. .-....++.+.++++|+++.
T Consensus 18 ~~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~ 68 (272)
T 2q02_A 18 GLSIEAFFRLVKRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEKYGLEIV 68 (272)
T ss_dssp TSCHHHHHHHHHHTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHHTTCEEE
T ss_pred CCCHHHHHHHHHHcCCCEEEeeccccccccccccCHHHHHHHHHHcCCeEE
Confidence 3578999999999999999997321 12346688889999999873
No 123
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Probab=26.08 E-value=17 Score=36.20 Aligned_cols=45 Identities=24% Similarity=0.364 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHhCCCcc----------------cCCCcchhHHHHHH---HhcCCccCCCCCC
Q psy9396 343 FLIVSDFIQWAKNNSIPV----------------GPGRGSGASSLVAY---SLSITDIDPLSYN 387 (1149)
Q Consensus 343 FLiv~D~v~~ak~~gi~v----------------GpGRGSaagSlVaY---~LgIT~vDPl~~~ 387 (1149)
.+...|+.+.|++.||.. ||||=||=-+|-+- ...|+||-||+||
T Consensus 75 q~aa~~~a~~a~e~Gi~~v~V~vkG~gg~~~kgpG~GresairaL~~~GlkI~~I~DvTpiPhN 138 (151)
T 2xzm_K 75 MQAAIDVVNRCKELKINALHIKLRAKGGVETKQPGPGAQSALRALARSGMKIGRIEDVTPIPTD 138 (151)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEEECCCTTSCCSCCSHHHHHHHHHHHTSCEEEEEEECCCCCSS
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEEcCCCCCccCCCccHHHHHHHHHHCCCEEEEEEEeCCCCCC
Confidence 467778888999888742 56666666666553 4467899999986
No 124
>4gxw_A Adenosine deaminase; amidohydrolase, COG1816, EFI, structural genomics, hydrolase; 1.30A {Burkholderia ambifaria}
Probab=25.51 E-value=32 Score=39.39 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=24.7
Q ss_pred cccccccccCchhhccccHHHHHHHHHHcCCC
Q psy9396 5 FIHLRLHSEYSIIDGLLRINDVIEAAANDYQP 36 (1149)
Q Consensus 5 fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~ 36 (1149)
-++||+| |||.++++-+++.|++.|.+
T Consensus 31 KvELH~H-----LdGsl~p~tl~~LA~~~g~~ 57 (380)
T 4gxw_A 31 KVELHCH-----LLGAVRHDTFVALAQRSGAP 57 (380)
T ss_dssp EEECCBB-----GGGCCCHHHHHHHHHHHTCS
T ss_pred hHHhhcC-----CcCCCCHHHHHHHHHHhCCC
Confidence 4899999 89999999999999999875
No 125
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=25.12 E-value=77 Score=26.64 Aligned_cols=31 Identities=6% Similarity=0.095 Sum_probs=24.2
Q ss_pred EecccccCCccHHHHHHHHHHHhcCCCCCHHHHHhh
Q psy9396 832 RYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKR 867 (1149)
Q Consensus 832 ~~gl~~Ikgvg~~~~~~i~~~r~~g~f~~~~df~~r 867 (1149)
..-|..|+|||...+..|++. |.|+.++...
T Consensus 13 ~~~L~~i~giG~~~a~~Ll~~-----fgs~~~l~~a 43 (75)
T 1x2i_A 13 RLIVEGLPHVSATLARRLLKH-----FGSVERVFTA 43 (75)
T ss_dssp HHHHTTSTTCCHHHHHHHHHH-----HCSHHHHHHC
T ss_pred HHHHcCCCCCCHHHHHHHHHH-----cCCHHHHHhC
Confidence 346889999999999999973 6777776543
No 126
>3iar_A Adenosine deaminase; purine metabolism structural genomics, structural genomics consortium, SGC, D mutation, hereditary hemolytic anemia, hydrolase; HET: 3D1; 1.52A {Homo sapiens} SCOP: c.1.9.1 PDB: 2bgn_E* 1w1i_E* 1qxl_A* 1krm_A* 1vfl_A 1ndv_A* 1ndy_A* 1ndz_A* 1o5r_A* 1uml_A* 1v79_A* 1v7a_A* 1ndw_A 1wxy_A* 1wxz_A* 2e1w_A* 2z7g_A* 2ada_A* 3mvi_A 1a4l_A* ...
Probab=24.33 E-value=35 Score=38.84 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=25.3
Q ss_pred ccccccccccCchhhccccHHHHHHHHHHcCCC
Q psy9396 4 QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQP 36 (1149)
Q Consensus 4 ~fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~ 36 (1149)
..++||+| |||.++++-+.+.|+++|.+
T Consensus 7 PK~ELH~H-----L~Gsl~p~tl~~La~~~~~~ 34 (367)
T 3iar_A 7 PKVELHVH-----LDGSIKPETILYYGRRRGIA 34 (367)
T ss_dssp CEEECCBB-----GGGSCCHHHHHHHHHHHTCC
T ss_pred CeeEeeec-----ccCCCCHHHHHHHHHhcCCC
Confidence 47899999 79999999999999999864
No 127
>3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel, beta-fold, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Oleispira antarctica}
Probab=24.28 E-value=59 Score=37.36 Aligned_cols=64 Identities=20% Similarity=0.221 Sum_probs=43.1
Q ss_pred CccccccccccCchhhcc---------------------ccHHHH-------HHHHHHcCCCEEEEecCCchhhHHHHHH
Q psy9396 3 PQFIHLRLHSEYSIIDGL---------------------LRINDV-------IEAAANDYQPALAITDLSNLFGIIKFYK 54 (1149)
Q Consensus 3 ~~fv~LHvHS~ySlldg~---------------------~~ieeL-------V~~Ake~G~~AlAITDH~nl~G~~~f~~ 54 (1149)
|.|||.|+|...|++.|. .+++++ +..+.+.|..++. |+.. ......+
T Consensus 86 PGlID~H~H~~~~~~~g~~~~~~l~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~--d~~~--~~~~~~~ 161 (468)
T 3lnp_A 86 PGWVNAHGHAAMSLFRGLADDLPLMTWLQEHVWPAEAQHVDEHFVKQGTELAIAEMIQSGTTTFA--DMYF--YPQQSGE 161 (468)
T ss_dssp ECEEECSCCGGGGGGTTSSCSCCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHHHHHTTEEEEE--ECCS--CHHHHHH
T ss_pred eCeechhhChhhhhhccCcCCCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHhCCcEEEE--Eccc--CHHHHHH
Confidence 469999999987776653 455544 4456778887665 5421 1234566
Q ss_pred HHHhCCCeeEeeeeee
Q psy9396 55 SAYNKGIKPIIGCDVW 70 (1149)
Q Consensus 55 ~ak~~GIKpIiG~Ei~ 70 (1149)
.+++.|++.+++..+.
T Consensus 162 ~~~~~g~r~~~~~~~~ 177 (468)
T 3lnp_A 162 AALAAGIRAVCFAPVL 177 (468)
T ss_dssp HHHHHTCEEEEEEEEC
T ss_pred HHHHcCCeEEEecccc
Confidence 7788899888777654
No 128
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=23.95 E-value=1.6e+02 Score=26.79 Aligned_cols=61 Identities=15% Similarity=0.141 Sum_probs=39.9
Q ss_pred CCceEEEEEEEeeeEeeecCCcEEEEEEEeC---CceEEEEEchHHHHHHHhhccCCcEEEEEEEEEe
Q psy9396 984 TYSCTVSGIITELKLKTTYRGKILIIVIDDN---SNSVEVIINNQLYEKNKNILKENELLIVSGKVLE 1048 (1149)
Q Consensus 984 ~~~v~v~G~I~~vk~~~TK~G~mafltleD~---tg~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~ 1048 (1149)
++++++.|+|..=...+...|.-.-+.+.|. ...+.|+ |.-. .-+++++|.-++++|++..
T Consensus 8 ~~~iRvgG~V~~GSv~r~~~~~~v~F~vtD~~~~~~~v~V~-Y~Gi---lPDlFrEGqgVV~~G~l~~ 71 (94)
T 2kct_A 8 LHTVRLFGTVAADGLTMLDGAPGVRFRLEDKDNTSKTVWVL-YKGA---VPDTFKPGVEVIIEGGLAP 71 (94)
T ss_dssp TCCEEEEEEECSTTCEECTTSSEEEEEEECSSCTTCEEEEE-EESC---CCTTCCTTCEEEEEEEECT
T ss_pred CCeEEEeeEEeCCeEEecCCCCEEEEEEEcCCCCCcEEEEE-ECCC---CCccccCCCeEEEEEEEeC
Confidence 3489999999854333333453345566777 6677764 4322 1256788999999999963
No 129
>3rys_A Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2.60A {Arthrobacter aurescens} SCOP: c.1.9.0
Probab=23.92 E-value=39 Score=38.05 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=25.3
Q ss_pred ccccccccccCchhhccccHHHHHHHHHHcCCC
Q psy9396 4 QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQP 36 (1149)
Q Consensus 4 ~fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~ 36 (1149)
..++||+| |+|.++|+-+.+.|+++|.+
T Consensus 14 PK~ELH~H-----l~Gsl~p~tl~~la~~~~~~ 41 (343)
T 3rys_A 14 PVAELHLH-----IEGTLQPELIFALAERNGIE 41 (343)
T ss_dssp CEEECSBB-----GGGGCCHHHHHHHHHHTTCC
T ss_pred CceeeEec-----CccCCCHHHHHHHHHhcCCC
Confidence 46899999 79999999999999999874
No 130
>3ret_A Salicylate biosynthesis protein PCHB; intertwined dimer, lyase, mutase; HET: SAL; 1.79A {Pseudomonas aeruginosa} SCOP: a.130.1.1 PDB: 2h9d_A 3rem_A* 3hgx_A* 3hgw_C 2h9c_A
Probab=23.70 E-value=3.4e+02 Score=24.55 Aligned_cols=67 Identities=10% Similarity=0.073 Sum_probs=44.5
Q ss_pred HHHHHHHHcCCCchhhhHHHHHhCCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhhHHHHHHHHH
Q psy9396 684 VMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSY 763 (1149)
Q Consensus 684 vM~ia~~~agfs~~eAD~lRram~KK~~~~m~~~~~~F~~ga~~~g~~~~~a~~i~~~i~~fa~YgFnksHa~aYa~~ay 763 (1149)
=|++++.+|.|-... +.--+++--+++.++..+.|...|++++.++.||..|.. +..++
T Consensus 31 R~~~~~~i~~~K~~~-------~~i~dp~RE~~vl~~~~~~a~~~~l~~~~i~~if~~ii~--------------~s~~~ 89 (101)
T 3ret_A 31 RMDYVKAASRFEASE-------AAIPAPERVAAMLPERARWAEENGLDAPFVEGLFAQIIH--------------WYIAE 89 (101)
T ss_dssp HHHHHHHHGGGCSSG-------GGTTCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH--------------HHHHH
T ss_pred HHHHHHHHHHHhhcC-------CCCCCHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHH--------------HHHHH
Confidence 356666666554321 112244555556666667777889999999999999977 56677
Q ss_pred HHHHHhhc
Q psy9396 764 YTAYLKTH 771 (1149)
Q Consensus 764 ~~AylK~~ 771 (1149)
|..+++.-
T Consensus 90 Q~~~~~~~ 97 (101)
T 3ret_A 90 QIKYWRQT 97 (101)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 77766653
No 131
>4h41_A Putative alpha-L-fucosidase; hydrolase, carbohydrate metabolism, HOST glycans, structural genomics; HET: MSE 1PE PE4 PG4 PG6; 1.80A {Bacteroides thetaiotaomicron}
Probab=23.00 E-value=85 Score=35.32 Aligned_cols=49 Identities=6% Similarity=-0.065 Sum_probs=37.3
Q ss_pred ccHHHHHHHHHHcCCCEEEEecCC----chh-------------h---HHHHHHHHHhCCCeeEeeeee
Q psy9396 21 LRINDVIEAAANDYQPALAITDLS----NLF-------------G---IIKFYKSAYNKGIKPIIGCDV 69 (1149)
Q Consensus 21 ~~ieeLV~~Ake~G~~AlAITDH~----nl~-------------G---~~~f~~~ak~~GIKpIiG~Ei 69 (1149)
-.-+++++.+|+.|++.|-||-.+ .+| + +-+|.++|+++|+|+.+|+-.
T Consensus 54 ~eW~~~~~~mK~~GikyvIl~~~~~~gf~~~pS~~~~~~~~~~p~~Dlv~~~l~aa~k~Gmkv~~Gly~ 122 (340)
T 4h41_A 54 KEWDLDFQHMKRIGIDTVIMIRSGYRKFMTYPSPYLLKKGCYMPSVDLVDMYLRLAEKYNMKFYFGLYD 122 (340)
T ss_dssp HHHHHHHHHHHHTTCCEEEESCSEETTEESSCCHHHHHTTCCCCSBCHHHHHHHHHHHTTCEEEEECCB
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEeeCCeeccCcccccccCccCCcccHHHHHHHHHHHhCCeEEEecCC
Confidence 345677999999999999987622 111 0 557889999999999999754
No 132
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=22.89 E-value=1.3e+02 Score=31.59 Aligned_cols=44 Identities=11% Similarity=0.079 Sum_probs=34.8
Q ss_pred ccHHHHHHHHHHcCCCEEEEecCC-----chhhHHHHHHHHHhCCCeeE
Q psy9396 21 LRINDVIEAAANDYQPALAITDLS-----NLFGIIKFYKSAYNKGIKPI 64 (1149)
Q Consensus 21 ~~ieeLV~~Ake~G~~AlAITDH~-----nl~G~~~f~~~ak~~GIKpI 64 (1149)
.++++.++.|++.|+++|-|.... .--.+.++.+.++++||++.
T Consensus 30 ~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~ 78 (257)
T 3lmz_A 30 FDLDTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGY 78 (257)
T ss_dssp SCHHHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEE
T ss_pred CCHHHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 489999999999999999998642 11223577888999999875
No 133
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=22.77 E-value=1.8e+02 Score=29.50 Aligned_cols=63 Identities=14% Similarity=0.155 Sum_probs=43.1
Q ss_pred EEEEEEEeCCceEEEEEchHHHHHH-------------------Hhhcc--CCcEEEEEEEEEeeccCCc--eEEEEccc
Q psy9396 1006 ILIIVIDDNSNSVEVIINNQLYEKN-------------------KNILK--ENELLIVSGKVLEDRFLKN--IRINAEKI 1062 (1149)
Q Consensus 1006 mafltleD~tg~ie~vvFp~~y~~~-------------------~~~l~--~~~~v~v~G~v~~~~~~~~--~~ii~~~i 1062 (1149)
+.-+.+.|.||.+-+++|.+.-++. ...+. .+..+.+++++..+.+++. +++.|.++
T Consensus 80 ~l~~~i~D~Tg~~~~t~F~~~ae~ilG~sA~el~~l~e~~~~~~~~~~~~~~~~~~~f~l~vk~e~yn~e~r~~~~v~~~ 159 (181)
T 1l1o_C 80 ILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDV 159 (181)
T ss_dssp EEEEEEECSSCEEEEEEEHHHHHHHHSSCHHHHHHHTTSCHHHHHHHHHHTTTCEEEEEEEEECCCC-----CEEEEEEE
T ss_pred EEEEEEEeCCCCEEEEEEhHHHHHHhCCCHHHHHHHHhhChHHHHHHHHHhcCceEEEEEEEEEeecCCEEEEEEEEEEe
Confidence 4469999999999999999876543 11111 2567788888877655544 67888888
Q ss_pred cccHHH
Q psy9396 1063 FDINVA 1068 (1149)
Q Consensus 1063 ~~l~~~ 1068 (1149)
.+++-.
T Consensus 160 ~~vd~~ 165 (181)
T 1l1o_C 160 KPVDYR 165 (181)
T ss_dssp EECCHH
T ss_pred eeCCHH
Confidence 887643
No 134
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=22.75 E-value=56 Score=36.66 Aligned_cols=33 Identities=18% Similarity=0.159 Sum_probs=28.3
Q ss_pred ccccCCccHHHHHHHHHHHhcCCCCCHHHHHhh
Q psy9396 835 LGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKR 867 (1149)
Q Consensus 835 l~~Ikgvg~~~~~~i~~~r~~g~f~~~~df~~r 867 (1149)
|..|+|||+.+++.|.+.++.|.+..++++...
T Consensus 59 l~~LpGIG~~~A~kI~E~l~tG~~~~le~l~~~ 91 (335)
T 2fmp_A 59 AKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQD 91 (335)
T ss_dssp HHTSTTCCHHHHHHHHHHHHHSSCHHHHHHHHC
T ss_pred HhcCCCCcHHHHHHHHHHHHhCCcHHHHHHHcc
Confidence 789999999999999999988888777776544
No 135
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=22.58 E-value=2.1e+02 Score=26.82 Aligned_cols=49 Identities=12% Similarity=0.009 Sum_probs=38.2
Q ss_pred CChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhhHHHHHHHHHHHHHHhhc
Q psy9396 709 KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTH 771 (1149)
Q Consensus 709 K~~~~m~~~~~~F~~ga~~~g~~~~~a~~i~~~i~~fa~YgFnksHa~aYa~~ay~~AylK~~ 771 (1149)
-+++.-+++.++..+.|.+.|++++.+++||..|.. +.+.||..++..|
T Consensus 54 ~dp~RE~~vl~~~~~~a~~~~l~~~~i~~if~~Ii~--------------~S~~~Q~~~~~~~ 102 (114)
T 3rmi_A 54 VDPLREQYQIKRLRKLAIDTHFDPDFAEKFLKFIIK--------------EVVHQHEVIAEKQ 102 (114)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------------HHHHHHHHHHHhh
Confidence 355666667777777788899999999999999987 5677777777643
No 136
>3pao_A Adenosine deaminase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: ADE; 2.49A {Pseudomonas aeruginosa} PDB: 3pan_A* 3ou8_A* 3pbm_A*
Probab=22.57 E-value=44 Score=37.39 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=25.1
Q ss_pred ccccccccccCchhhccccHHHHHHHHHHcCCC
Q psy9396 4 QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQP 36 (1149)
Q Consensus 4 ~fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~ 36 (1149)
.-++||+| |||.++|+-+.+.|++.|.+
T Consensus 11 PK~ELH~H-----l~Gsl~~~t~~~la~~~~~~ 38 (326)
T 3pao_A 11 PKAELHLH-----LEGTLEPELLFALAERNRIA 38 (326)
T ss_dssp CEEECSBB-----GGGGCCHHHHHHHHHHTTCC
T ss_pred CceEEEec-----ccCCCCHHHHHHHHHhcCCC
Confidence 36899999 79999999999999999974
No 137
>4f0r_A 5-methylthioadenosine/S-adenosylhomocysteine DEAM; structural genomics, PSI-biology; HET: MSE MTA; 1.80A {Chromobacterium violaceum} PDB: 4f0s_A*
Probab=22.54 E-value=68 Score=36.57 Aligned_cols=64 Identities=20% Similarity=0.417 Sum_probs=43.0
Q ss_pred CccccccccccCchhhcc---------------------ccHHH-------HHHHHHHcCCCEEEEecCCchhhHHHHHH
Q psy9396 3 PQFIHLRLHSEYSIIDGL---------------------LRIND-------VIEAAANDYQPALAITDLSNLFGIIKFYK 54 (1149)
Q Consensus 3 ~~fv~LHvHS~ySlldg~---------------------~~iee-------LV~~Ake~G~~AlAITDH~nl~G~~~f~~ 54 (1149)
|.|+|.|+|...|++.|. .++++ .+..+.+.|..++. |+. .......+
T Consensus 64 PGlID~H~Hl~~~~~~g~~~~~~~~~wl~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~--d~~--~~~~~~~~ 139 (447)
T 4f0r_A 64 PGLINLHGHSAMSLLRGLADDKALMDWLTNYIWPTEGKHVHDDFVFDGSLLAMGEMIRGGTTTIN--DMY--FYNAAVAR 139 (447)
T ss_dssp ECEEEEEECGGGGGGTTSSCSSCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHHHHHTTEEEEE--ECB--SCHHHHHH
T ss_pred eCccchhhChhhHhhccCCCCCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHhCCcEEEE--Ecc--cCHHHHHH
Confidence 569999999988776553 44454 34556678988775 332 12344566
Q ss_pred HHHhCCCeeEeeeeee
Q psy9396 55 SAYNKGIKPIIGCDVW 70 (1149)
Q Consensus 55 ~ak~~GIKpIiG~Ei~ 70 (1149)
++.+.|++..++..+.
T Consensus 140 ~~~~~g~r~~~~~~~~ 155 (447)
T 4f0r_A 140 AGLASGMRTFVGCSIL 155 (447)
T ss_dssp HHHHHTCEEEEEEEEC
T ss_pred HHHHcCCeEEEEchhc
Confidence 7788899888876654
No 138
>2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous activities, enzyme evolution, hyperthermophilic, lactonase, hydrolase; HET: KCX GOL HT5; 2.05A {Sulfolobus solfataricus} PDB: 2vc5_A*
Probab=22.30 E-value=1.1e+02 Score=33.09 Aligned_cols=67 Identities=13% Similarity=0.075 Sum_probs=41.5
Q ss_pred ccccccccccCchhhc-----c-----ccHHHH---HHHHHHcCCCEEEEecCCch-hhHHHHHHHHHhCCCeeEeeeee
Q psy9396 4 QFIHLRLHSEYSIIDG-----L-----LRINDV---IEAAANDYQPALAITDLSNL-FGIIKFYKSAYNKGIKPIIGCDV 69 (1149)
Q Consensus 4 ~fv~LHvHS~ySlldg-----~-----~~ieeL---V~~Ake~G~~AlAITDH~nl-~G~~~f~~~ak~~GIKpIiG~Ei 69 (1149)
.++|.|+|...++.+. . ...+.. +++|++.|...+...=+... -.+....+.+++.|+.++.++-+
T Consensus 17 G~iD~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gv~~iv~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~ 96 (314)
T 2vc7_A 17 GFTLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTIVDPTVMGLGRDIRFMEKVVKATGINLVAGTGI 96 (314)
T ss_dssp CSEESSCBSCBCCHHHHHHCGGGCCHHHHHHHHHHHHHHHHHTTCCEEEECCCBTTTCCHHHHHHHHHHHCCEEEECEEB
T ss_pred CCcccccccccCcchhcccCcchhhhcccHHHHHHHHHHHHHcCCCEEEecCCCCCCcCHHHHHHHHHHcCCeEEEEeec
Confidence 5899999998754332 1 122233 48899999998765433311 12455567788888776666544
Q ss_pred e
Q psy9396 70 W 70 (1149)
Q Consensus 70 ~ 70 (1149)
+
T Consensus 97 h 97 (314)
T 2vc7_A 97 Y 97 (314)
T ss_dssp C
T ss_pred C
Confidence 3
No 139
>3d3a_A Beta-galactosidase; protein structure initiative II, PSI II, NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides thetaiotaomicron vpi-5482}
Probab=22.19 E-value=1.1e+02 Score=37.40 Aligned_cols=49 Identities=14% Similarity=0.097 Sum_probs=41.1
Q ss_pred cccHHHHHHHHHHcCCCEEEEe-------------cCCchhhHHHHHHHHHhCCCeeEeeee
Q psy9396 20 LLRINDVIEAAANDYQPALAIT-------------DLSNLFGIIKFYKSAYNKGIKPIIGCD 68 (1149)
Q Consensus 20 ~~~ieeLV~~Ake~G~~AlAIT-------------DH~nl~G~~~f~~~ak~~GIKpIiG~E 68 (1149)
.-..++.++.+|+.|+.+|-+. |...+....+|++.|+++||++|...-
T Consensus 36 ~e~w~~dl~~mK~~G~N~Vrt~v~W~~hEP~~G~ydf~gl~~l~~fl~la~e~GL~VIl~~g 97 (612)
T 3d3a_A 36 KEYWEHRIKMCKALGMNTICLYVFWNFHEPEEGRYDFAGQKDIAAFCRLAQENGMYVIVRPG 97 (612)
T ss_dssp GGGHHHHHHHHHHHTCCEEEEECCHHHHCSSTTCCCCSGGGCHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHHHHcCCCEEEEcChHHhcCCCCCccChhHHHHHHHHHHHHHHCCCEEEEecC
Confidence 4567889999999999999997 444456678999999999999998654
No 140
>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A
Probab=22.09 E-value=65 Score=36.00 Aligned_cols=47 Identities=9% Similarity=0.005 Sum_probs=38.7
Q ss_pred HHHHHHHHHHcCCCEEEEe-------cCCchhhHHHHHHHHHhCCCeeEeeeee
Q psy9396 23 INDVIEAAANDYQPALAIT-------DLSNLFGIIKFYKSAYNKGIKPIIGCDV 69 (1149)
Q Consensus 23 ieeLV~~Ake~G~~AlAIT-------DH~nl~G~~~f~~~ak~~GIKpIiG~Ei 69 (1149)
.++..+.++++|+.++=+- ++.++--..+..+.|+++|++|++++-.
T Consensus 29 ~~~~~~ilk~~G~n~vRlri~v~P~~g~~d~~~~~~~~~~ak~~Gl~v~ld~hy 82 (334)
T 1fob_A 29 TQALETILADAGINSIRQRVWVNPSDGSYDLDYNLELAKRVKAAGMSLYLDLHL 82 (334)
T ss_dssp BCCHHHHHHHHTCCEEEEEECSCCTTCTTCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CchHHHHHHHcCCCEEEEEEEECCCCCccCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3478899999999999993 5566777778888899999999998643
No 141
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=22.03 E-value=92 Score=32.27 Aligned_cols=45 Identities=13% Similarity=-0.037 Sum_probs=34.1
Q ss_pred HHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhCCCee---Eeee
Q psy9396 23 INDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP---IIGC 67 (1149)
Q Consensus 23 ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~GIKp---IiG~ 67 (1149)
++..++.+.+.|-+.+.+-+-..-.-..++.+.|+++|+++ ++|+
T Consensus 72 p~~~~~~~~~aGad~i~vh~~~~~~~~~~~~~~~~~~g~~~~~d~l~~ 119 (218)
T 3jr2_A 72 GAILSRMAFEAGADWITVSAAAHIATIAACKKVADELNGEIQIEIYGN 119 (218)
T ss_dssp HHHHHHHHHHHTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECCSS
T ss_pred HHHHHHHHHhcCCCEEEEecCCCHHHHHHHHHHHHHhCCccceeeeec
Confidence 45588999999999999976554323457788899999988 4555
No 142
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=21.77 E-value=1.1e+02 Score=32.75 Aligned_cols=46 Identities=4% Similarity=-0.130 Sum_probs=35.5
Q ss_pred ccccHHHHHHHHHHcCCCEEEEecCCc----------hhhHHHHHHHHHhCCCeeE
Q psy9396 19 GLLRINDVIEAAANDYQPALAITDLSN----------LFGIIKFYKSAYNKGIKPI 64 (1149)
Q Consensus 19 g~~~ieeLV~~Ake~G~~AlAITDH~n----------l~G~~~f~~~ak~~GIKpI 64 (1149)
...++++.++.|++.|+++|-|.-... -..+.++.+.++++|+++.
T Consensus 28 ~~~~~~~~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~ 83 (295)
T 3cqj_A 28 AGECWLERLQLAKTLGFDFVEMSVDETDERLSRLDWSREQRLALVNAIVETGVRVP 83 (295)
T ss_dssp CCSCHHHHHHHHHHTTCSEEEEECCSSHHHHGGGGCCHHHHHHHHHHHHHHCCEEE
T ss_pred CCCCHHHHHHHHHhcCCCEEEEecCCcccccCcccCCHHHHHHHHHHHHHcCCeEE
Confidence 346899999999999999999975432 1224567788899999864
No 143
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=21.53 E-value=1.5e+02 Score=29.35 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=38.4
Q ss_pred hhccccHHHHHHHHHHcCCCEEEEecC--CchhhHHHHHHHHHhCC---CeeEee
Q psy9396 17 IDGLLRINDVIEAAANDYQPALAITDL--SNLFGIIKFYKSAYNKG---IKPIIG 66 (1149)
Q Consensus 17 ldg~~~ieeLV~~Ake~G~~AlAITDH--~nl~G~~~f~~~ak~~G---IKpIiG 66 (1149)
|....+++++++.|++.+-+.|+|+=. ..+-.+.++.+.+++.| +++++|
T Consensus 52 lG~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~L~~~g~~~i~v~vG 106 (161)
T 2yxb_A 52 TGLRQTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAKLRELGADDIPVVLG 106 (161)
T ss_dssp CCSBCCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHHHHHTTCTTSCEEEE
T ss_pred CCCCCCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 355689999999999999999998753 34556677777787765 666666
No 144
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=20.79 E-value=1.3e+02 Score=32.01 Aligned_cols=44 Identities=7% Similarity=-0.083 Sum_probs=37.0
Q ss_pred ccHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhCCCeeE
Q psy9396 21 LRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64 (1149)
Q Consensus 21 ~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~GIKpI 64 (1149)
.++++.++.|++.|+++|-|.-...-....++.+.++++|+++.
T Consensus 38 ~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gl~v~ 81 (287)
T 3kws_A 38 ESLNEKLDFMEKLGVVGFEPGGGGLAGRVNEIKQALNGRNIKVS 81 (287)
T ss_dssp SSHHHHHHHHHHTTCCEEECBSTTCGGGHHHHHHHHTTSSCEEC
T ss_pred CCHHHHHHHHHHcCCCEEEecCCchHHHHHHHHHHHHHcCCeEE
Confidence 58999999999999999999877544456788888899999874
No 145
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=20.54 E-value=72 Score=28.40 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=25.0
Q ss_pred eEEecccccCCccHHHHHHHHHHHhcCCCCCHHHHHh
Q psy9396 830 KIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTK 866 (1149)
Q Consensus 830 ~I~~gl~~Ikgvg~~~~~~i~~~r~~g~f~~~~df~~ 866 (1149)
.....|..|+|||+..+..|++. |.|+.++..
T Consensus 29 ~~~~~L~~IpgIG~~~A~~Ll~~-----fgs~~~l~~ 60 (91)
T 2a1j_B 29 RVTECLTTVKSVNKTDSQTLLTT-----FGSLEQLIA 60 (91)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHH-----HSSHHHHHS
T ss_pred HHHHHHHcCCCCCHHHHHHHHHH-----CCCHHHHHh
Confidence 34558899999999999999864 567777653
Done!