Your job contains 1 sequence.
>psy9396
MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG
IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL
EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN
FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN
FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH
GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV
GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV
KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK
EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG
IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN
LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF
NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF
FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN
LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG
TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS
IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE
HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV
IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF
NRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALINLG
LYNAIIEYS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy9396
(1149 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|P10443 - symbol:dnaE species:83333 "Escherichia... 2269 2.7e-235 1
UNIPROTKB|Q48F74 - symbol:dnaE "DNA polymerase III, alpha... 2086 1.2e-234 2
TIGR_CMR|SO_1644 - symbol:SO_1644 "DNA polymerase III, al... 2226 9.6e-231 1
UNIPROTKB|P52022 - symbol:dnaE "DNA polymerase III subuni... 2222 2.6e-230 1
TIGR_CMR|VC_2245 - symbol:VC_2245 "DNA polymerase III, al... 2222 2.6e-230 1
TIGR_CMR|CBU_1337 - symbol:CBU_1337 "DNA polymerase III, ... 2207 9.9e-229 1
TIGR_CMR|CPS_1570 - symbol:CPS_1570 "DNA polymerase III, ... 2045 1.5e-211 1
TIGR_CMR|GSU_1401 - symbol:GSU_1401 "DNA polymerase III, ... 1931 1.8e-199 1
TIGR_CMR|CHY_1137 - symbol:CHY_1137 "DNA polymerase III, ... 1822 6.2e-188 1
TIGR_CMR|ECH_0922 - symbol:ECH_0922 "DNA polymerase III, ... 1817 2.1e-187 1
TIGR_CMR|APH_1003 - symbol:APH_1003 "DNA polymerase III, ... 1809 1.5e-186 1
UNIPROTKB|Q0C1C2 - symbol:dnaE "DNA polymerase III, alpha... 1686 1.6e-173 1
TIGR_CMR|DET_1464 - symbol:DET_1464 "DNA polymerase III, ... 1634 5.2e-168 1
TIGR_CMR|SPO_0656 - symbol:SPO_0656 "DNA polymerase III, ... 1607 3.8e-165 1
TIGR_CMR|NSE_0167 - symbol:NSE_0167 "DNA polymerase III, ... 1377 8.5e-165 3
TIGR_CMR|BA_4849 - symbol:BA_4849 "DNA polymerase III, al... 1388 3.9e-155 2
TIGR_CMR|CJE_0818 - symbol:CJE_0818 "DNA polymerase III, ... 1453 7.9e-149 1
UNIPROTKB|P63977 - symbol:dnaE1 "DNA polymerase III subun... 1283 8.1e-131 1
TIGR_CMR|CHY_0959 - symbol:CHY_0959 "DNA polymerase III, ... 861 3.0e-98 3
UNIPROTKB|O50399 - symbol:dnaE2 "Error-prone DNA polymera... 731 9.6e-71 2
TIGR_CMR|SPO_0670 - symbol:SPO_0670 "DNA polymerase III, ... 679 1.2e-66 2
TIGR_CMR|CHY_1772 - symbol:CHY_1772 "DNA polymerase III, ... 234 5.8e-15 4
TIGR_CMR|BA_3955 - symbol:BA_3955 "DNA polymerase III, al... 197 7.4e-12 4
UNIPROTKB|P75080 - symbol:polC "DNA polymerase III PolC-t... 131 5.9e-06 3
>UNIPROTKB|P10443 [details] [associations]
symbol:dnaE species:83333 "Escherichia coli K-12"
[GO:0008408 "3'-5' exonuclease activity" evidence=IDA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA;IDA]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR003141 InterPro:IPR004013
InterPro:IPR004365 InterPro:IPR004805 InterPro:IPR011708
InterPro:IPR016195 Pfam:PF01336 Pfam:PF02811 Pfam:PF07733
SMART:SM00481 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0006260 EMBL:M96394 EMBL:D49445 EMBL:U70214 EMBL:M19334
Gene3D:2.40.50.140 InterPro:IPR012340 GO:GO:0003887 eggNOG:COG0587
SUPFAM:SSF89550 TIGRFAMs:TIGR00594 EMBL:S52931 PIR:C28390
RefSeq:NP_414726.1 RefSeq:YP_488486.1 PDB:2HNH PDB:2HQA PDBsum:2HNH
PDBsum:2HQA ProteinModelPortal:P10443 SMR:P10443 DIP:DIP-9458N
IntAct:P10443 MINT:MINT-1224103 PRIDE:P10443
EnsemblBacteria:EBESCT00000003957 EnsemblBacteria:EBESCT00000015810
GeneID:12933234 GeneID:944877 KEGG:ecj:Y75_p0180 KEGG:eco:b0184
PATRIC:32115479 EchoBASE:EB0234 EcoGene:EG10238
HOGENOM:HOG000021784 KO:K02337 OMA:DFYLEIM ProtClustDB:PRK05673
BioCyc:EcoCyc:EG10238-MONOMER BioCyc:ECOL316407:JW0179-MONOMER
BioCyc:MetaCyc:EG10238-MONOMER BindingDB:P10443 ChEMBL:CHEMBL4621
EvolutionaryTrace:P10443 Genevestigator:P10443 Uniprot:P10443
Length = 1160
Score = 2269 (803.8 bits), Expect = 2.7e-235, P = 2.7e-235
Identities = 488/1156 (42%), Positives = 726/1156 (62%)
Query: 3 PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
P+F+HLR+HS+YS+IDGL + +++ AA PALAITD +NL G++KFY + + GIK
Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63
Query: 63 PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAE--IRIEWL 120
PI+G D + ++ + + L +L NN GY L L+SKAY YG A I +WL
Sbjct: 64 PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRG--YGAAGPIIDRDWL 121
Query: 121 -EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
E N +GLI LSG +GD+G ++ G + + + + + FPD +++E+ R +P+
Sbjct: 122 IELN---EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDE 178
Query: 180 NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
+ + +A LP+VAT+ ++F+ ++F AHE+R I +G L + KR + ++ +Q
Sbjct: 179 ESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQ 238
Query: 240 NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
+++ EM +LF DIP A+ NT+EIAKRCN+ + G+ LP+FPT +++ D+L+ ++K
Sbjct: 239 YMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTG-DMSTEDYLVKRAK 297
Query: 300 HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
GL++RL L+ D E + Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +P
Sbjct: 298 EGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVP 357
Query: 360 VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
VGPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++
Sbjct: 358 VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEH 417
Query: 420 VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
V D YG+DAVSQI+TFGTMAAK IRDVGRVL Y F D ISKLIP PG +TL+ A
Sbjct: 418 VADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAF 475
Query: 480 KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
+ EPQL E + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY E
Sbjct: 476 EAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGK 535
Query: 540 GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKD 597
++Q+DK D+E GL+KFDFLGL TL+I++ + I K K L+ +PL+DK
Sbjct: 536 HPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKK 595
Query: 598 TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
++++L+++ T AVFQLES+GMK+++K +PD FE++IAL++L+RPGP+ ++ NF RK
Sbjct: 596 SFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655
Query: 656 HG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
HG E +YPD + K VL TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK
Sbjct: 656 HGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715
Query: 710 KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHXXXXXXXXXXXXXXX 769
K EM + R F GA K G++ A +IF+ +EKFAGYGFNKSH
Sbjct: 716 KPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775
Query: 770 XHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
HY + FMAA ++ MD+T K+ LV + + GL ILPP+IN Y+F + DG+
Sbjct: 776 AHYPAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDGE-- 830
Query: 830 KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYXXXXXXXXXXXXGAFD 888
I YG+GAIKG G+ IEAI+ R K G+F LFD R D K GAFD
Sbjct: 831 -IVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFD 889
Query: 889 CFNEKRYMLVASIDVALKNAEKTKKF--INQLSLFK--NDDNNNLKEYLNYVKVPSWSKK 944
R L+ S+ ALK A++ K I Q +F ++ +++ +Y W ++
Sbjct: 890 RLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQ--SYASCQPWPEQ 947
Query: 945 QELIEEKKVLGFCLSEHIFCIYETEIRQFIP-IYLSELKPTYS---CTVSGIITELKLKT 1000
L E++ LG L+ H Y EI +++ + L ++ PT T +G++ ++
Sbjct: 948 VVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMV 1007
Query: 1001 TYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINA 1059
T RG +I I +DD S +EV++ +K + +L+++ +LIVSG+V D F +++ A
Sbjct: 1008 TKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTA 1067
Query: 1060 EKIFDINVARILYGKKFSV-MFNRTFNISILKKILLRFKC-KNG-LPFVLYYCINKSIKY 1116
++ DI+ AR Y + ++ + +R + +L ++ + ++G +P LYY +
Sbjct: 1068 REVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARA 1126
Query: 1117 EMKFPLNYKVQPIDDL 1132
++F ++V P D L
Sbjct: 1127 RLRFGATWRVSPSDRL 1142
>UNIPROTKB|Q48F74 [details] [associations]
symbol:dnaE "DNA polymerase III, alpha subunit"
species:264730 "Pseudomonas syringae pv. phaseolicola 1448A"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR003141
InterPro:IPR004013 InterPro:IPR004365 InterPro:IPR004805
InterPro:IPR011708 InterPro:IPR016195 Pfam:PF01336 Pfam:PF02811
Pfam:PF07733 SMART:SM00481 GO:GO:0005737 GO:GO:0003677
GO:GO:0006260 EMBL:CP000058 GenomeReviews:CP000058_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0008408
GO:GO:0003887 eggNOG:COG0587 SUPFAM:SSF89550 TIGRFAMs:TIGR00594
HOGENOM:HOG000021784 KO:K02337 ProtClustDB:PRK05673 GO:GO:0009360
RefSeq:YP_275963.1 ProteinModelPortal:Q48F74 SMR:Q48F74
STRING:Q48F74 GeneID:3555961 KEGG:psp:PSPPH_3825 PATRIC:19977089
OMA:AELAYPH Uniprot:Q48F74
Length = 1173
Score = 2086 (739.4 bits), Expect = 1.2e-234, Sum P(2) = 1.2e-234
Identities = 419/900 (46%), Positives = 589/900 (65%)
Query: 1 MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
M F+HLRLH+EYS++DGL+R+ +I+A PA+A+TD +N+ ++KFYK+A G
Sbjct: 1 MPASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSG 60
Query: 61 IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
IKPI G D+W+ E+ SR+ LL N GY L EL+S+ +IE G+ I+ +W+
Sbjct: 61 IKPICGVDLWLAGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQIVIQRQWV 120
Query: 121 EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
+ +G+IALS A G+IG+A+ G A+ R W +FP+ FYIE+QR + N
Sbjct: 121 AQAS--EGVIALSAAKEGEIGMALLGGNPGEADELLREWMAVFPERFYIEVQRTNRNNDE 178
Query: 181 FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
+ + +A P+VAT+ ++F+K+T+F AHE R CI EG L + +R ++ +Q
Sbjct: 179 EHLHAAVALAERHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDPRRSHNYSDQQY 238
Query: 241 FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
K+ EM +LF D+P A++NT+EIAKRCN+ ++ G LP FP P + I+++ S
Sbjct: 239 LKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTIDEYFRKVSFD 298
Query: 301 GLKKRLLNLY-KDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
GL++RL L KD E Y+ ++ Y RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299 GLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358
Query: 359 PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
PVGPGRGSGA SLVAY ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI+
Sbjct: 359 PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIE 418
Query: 419 YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
YV ++YG++AVSQI+TFG+MAAK +RDV RV Y D +SK+IPF+ G +TL A
Sbjct: 419 YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476
Query: 479 IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
++E L + +K +EE ++ E+A ++EGI+RNVG HAGGV+IAP+KL +F P+Y E
Sbjct: 477 YEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536
Query: 539 TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
G+++Q+DKDD+E GL+KFDFLGL TL+I+D + I + K L+ +PL+D
Sbjct: 537 DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDM 596
Query: 597 DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
TY LL++A T AVFQLES+GMK ++K+ KPD E++IAL++L+RPGP+ ++ +F R
Sbjct: 597 PTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656
Query: 655 KHGEY-FNYP--DPR---TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
KHG +YP D + K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657 KHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716
Query: 709 KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHXXXXXXXXXXXXXX 768
KK EM + R F G + A IF+ +EKFAGYGFNKSH
Sbjct: 717 KKPEEMAKQRGGFIEGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776
Query: 769 XXHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
HY + FMAA LS M +T+K+ L+++ ++T L + P++N S++ F + DG+
Sbjct: 777 KTHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNTSEFKF--TVSDDGR- 832
Query: 829 KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYXXXXXXXXXXXXGAFD 888
I YGLGAIKG G+ +EAI R+ G F +LFDF R+D K GA D
Sbjct: 833 --ILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDGLIRSGALD 890
Score = 200 (75.5 bits), Expect = 1.2e-234, Sum P(2) = 1.2e-234
Identities = 71/270 (26%), Positives = 127/270 (47%)
Query: 891 NEKRYMLVASIDVALKNAEKTKKFINQ--LSLFKN-DDNNNLKEYLNYVKVPSWSKKQEL 947
+ R +L+A+++ A++ AE+T + + LF + Y N+ K S K L
Sbjct: 908 DRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGGLFVEADADVYANHRKTRELSLKDRL 967
Query: 948 IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TVSGIITELKLKTTYRG-K 1005
EK+ LG L+ H YE EIR+F + +LKP TV+G+I L++ +G K
Sbjct: 968 RGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTVAGLIIALRVMKNKKGDK 1027
Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
+ I +DD S +E + + + +++L+ + +++V G+V D F +R+ A+++ I
Sbjct: 1028 MGFITLDDRSARIEASLFAEAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLRAKRVMSI 1087
Query: 1066 NVARILYGKKFSVMFNRTFNISILKKILLRFK---CKN---GLPFVLYYCINKSIKYEMK 1119
AR + V T LK LR+ CK P + Y + + ++
Sbjct: 1088 EDARTNLAESLRV----TVRAEALKGDRLRWLGDLCKRHRGACPITVDYT-GQDARALLQ 1142
Query: 1120 FPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
+++ P D L AL + G N ++Y
Sbjct: 1143 LGEAWRIDPADSLIQALRDQFGRENVFLQY 1172
>TIGR_CMR|SO_1644 [details] [associations]
symbol:SO_1644 "DNA polymerase III, alpha subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009360 "DNA polymerase III complex"
evidence=ISS] InterPro:IPR003141 InterPro:IPR004013
InterPro:IPR004365 InterPro:IPR004805 InterPro:IPR011708
InterPro:IPR016195 Pfam:PF01336 Pfam:PF02811 Pfam:PF07733
SMART:SM00481 GO:GO:0005737 GO:GO:0003677 GO:GO:0006260
EMBL:AE014299 GenomeReviews:AE014299_GR Gene3D:2.40.50.140
InterPro:IPR012340 GO:GO:0008408 GO:GO:0003887 SUPFAM:SSF89550
TIGRFAMs:TIGR00594 HOGENOM:HOG000021784 KO:K02337
ProtClustDB:PRK05673 OMA:AELAYPH RefSeq:NP_717255.1
ProteinModelPortal:Q8EGG0 GeneID:1169438 KEGG:son:SO_1644
PATRIC:23522922 Uniprot:Q8EGG0
Length = 1158
Score = 2226 (788.7 bits), Expect = 9.6e-231, P = 9.6e-231
Identities = 477/1159 (41%), Positives = 713/1159 (61%)
Query: 3 PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
P+F+HLR+HS++S+ DG+ ++ ++ A+A+TD +NL G++KFY + GIK
Sbjct: 4 PRFVHLRVHSDFSMSDGVAKVKPILAQVEAKGMAAVALTDQNNLCGLVKFYGGCHGAGIK 63
Query: 63 PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
PIIG D W+ + + ++ +N GY L +++S+AY+ GR I EWL
Sbjct: 64 PIIGADFWMQVPGFEDEFCAVTIIAMDNEGYQNLTQIISQAYLRGQVQGRVVIDQEWLIT 123
Query: 123 NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
Y G++ LSG GDIG A+ G N E+ + + F +++E+ R +P+
Sbjct: 124 --YNPGILLLSGGKEGDIGKALLKGNNTQVESLCEFYQQHFEGRYFLELLRTGRPDEERY 181
Query: 183 IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
+ + +A +P+VAT+ + FLK +F AHE+R I +G L++ +R KK++++Q +
Sbjct: 182 LHMAVGVAQEKGIPVVATNQVVFLKPEDFEAHEIRVAIHDGFTLADPRRPKKYSEQQYLR 241
Query: 243 TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
++ EM +LF DIP+A+ NT+EIAKRCN+ + + LP FPT +++I DFL+ SK GL
Sbjct: 242 SEDEMCELFADIPAALANTVEIAKRCNVTIRLNEYFLPNFPTG-DMSIEDFLVDCSKKGL 300
Query: 303 KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
++RL L+ DP++ + Y +RL E++ I +M F GYFLIV +FIQW K+N IPVGP
Sbjct: 301 EERLAFLFPDPQVRAERRGEYDERLDVELKVINQMGFPGYFLIVMEFIQWGKDNGIPVGP 360
Query: 363 GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI +V +
Sbjct: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE 420
Query: 423 RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
YG++AVSQI+TFGTMAAK IRDVGRVL Y F D ISKLIP +PG +TL+ A + E
Sbjct: 421 LYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPEPG--MTLAKAFEVE 478
Query: 483 PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLY-KQEGMTGI 541
P L E +E+V+ LI++ +++EG+ RN G HAGGV+IAP+K+ +F PLY EG +
Sbjct: 479 PALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITDFSPLYCDAEGKNPV 538
Query: 542 ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKT--TNFSLNKLPLNDKDTY 599
+Q+DK+D+E GL+KFDFLGL TL+I+D + I K+ K + + +PL+D ++
Sbjct: 539 -TQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRSPIRIEAIPLDDPASF 597
Query: 600 NLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG 657
LL++ T AVFQLES+GMK+++K +PD FE++IAL++L+RPGP+ ++ NF RKHG
Sbjct: 598 RLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHG 657
Query: 658 -EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKT 711
E +YPD + K++LS TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK
Sbjct: 658 REEVSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKP 717
Query: 712 SEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHXXXXXXXXXXXXXXXXH 771
EM + R F+ GAIK G+ + +IF+ +EKFAGYGFNKSH H
Sbjct: 718 EEMAKQRSIFKEGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTH 777
Query: 772 YSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKI 831
+ FMAA +S MD+T+KI LV D + GL+I+PP++N + F ++ D +I
Sbjct: 778 FPPQFMAAVMSADMDNTDKIVTLV-DECERMGLTIIPPDVNKGLFKF--TVDDD---LRI 831
Query: 832 RYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYXXXXXXXXXXXXGAFDCFN 891
YG+GAIKG G+ +E+I+ RK G FT+LFDF RID K GA D
Sbjct: 832 VYGIGAIKGVGEGPVESILEARKDGPFTDLFDFCARIDLKKLNKRVIEKLICAGALDALG 891
Query: 892 EKRYMLVASIDVALKNAEKTKKF--INQLSLFK--NDDNNNLKEYLNYVKVPSWSKKQEL 947
R ++A++ A+ A++ K I Q +F N D + K+ +V+ W K L
Sbjct: 892 PHRASMMATLPEAISAADQHAKAEAIGQHDMFGLLNSDPEDSKQ--QFVECTPWPDKIWL 949
Query: 948 IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT-YSCTV--SGIITELKLKTTYRG 1004
E++ LG L+ H Y E++ + L ++ PT TV +G++ ++ T RG
Sbjct: 950 EGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTDRGKTVKAAGLVVATRVMLTKRG 1009
Query: 1005 -KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
K+ ++ +DD S +EV++ + +EK ++L+++ +LI G+V D F R+ A I
Sbjct: 1010 SKMGLLTLDDKSARLEVMLFTEAFEKFNHLLEKDRILICEGEVSFDDFAGGNRMTARNII 1069
Query: 1064 DINVARILYGKKFSVMFNRT-FNISILKKILLRFK-CKNG-LPFVLYYCINKSIKYEMKF 1120
DI+ AR + + + S+L I +NG +P ++ Y K + +
Sbjct: 1070 DISEARSHFASALEIDLEASQLTPSMLDSIEQAISPWRNGAVPVLINYS-QAQAKGQFRL 1128
Query: 1121 PLNYKVQPIDDLKLALINL 1139
++V P D+L AL +L
Sbjct: 1129 AEAWRVNPSDELVFALESL 1147
>UNIPROTKB|P52022 [details] [associations]
symbol:dnaE "DNA polymerase III subunit alpha"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR003141
InterPro:IPR004013 InterPro:IPR004365 InterPro:IPR004805
InterPro:IPR011708 InterPro:IPR016195 Pfam:PF01336 Pfam:PF02811
Pfam:PF07733 SMART:SM00481 GO:GO:0005737 GO:GO:0003677
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:2.40.50.140 InterPro:IPR012340 GO:GO:0008408 GO:GO:0003887
eggNOG:COG0587 SUPFAM:SSF89550 TIGRFAMs:TIGR00594 KO:K02337
OMA:DFYLEIM ProtClustDB:PRK05673 EMBL:U30472 PIR:G82100
RefSeq:NP_231876.1 ProteinModelPortal:P52022 SMR:P52022
DNASU:2613167 GeneID:2613167 KEGG:vch:VC2245 PATRIC:20083533
GO:GO:0009360 Uniprot:P52022
Length = 1159
Score = 2222 (787.2 bits), Expect = 2.6e-230, P = 2.6e-230
Identities = 469/1095 (42%), Positives = 688/1095 (62%)
Query: 3 PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
P+FIHLR+HS++S++DGL ++ +++ A PA+A+TD +NL G++KFY +A+N G+K
Sbjct: 4 PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 63
Query: 63 PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
PIIG D + +E + ++L LL KNN GY L L+SKAY+ + I WL +
Sbjct: 64 PIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE 123
Query: 123 NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
+ +GLI LSG G++G A+ G E + F D+FY+E+ R + +
Sbjct: 124 --HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESY 181
Query: 183 IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
+ +++A +LP+VAT+ + F+ + F AHE+R I +G L + +R K ++ +Q +
Sbjct: 182 LHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLR 241
Query: 243 TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
+++EM +LF DIP A+ N++EIAKRCN+ + G+ LP FPT + I DFL+ KS+ GL
Sbjct: 242 SEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-GMAIEDFLVMKSREGL 300
Query: 303 KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
++RL L+ DPE+ + Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301 EERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360
Query: 363 GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361 GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420
Query: 423 RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
YG+DAVSQI+TFGTMAAK IRDVGRVL + F D ISKL+P PG +TL A E
Sbjct: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFIAE 478
Query: 483 PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
P L E +EEV++LI+ + +EG RN G HAGGV+I+P+ + +F P+Y +
Sbjct: 479 PALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPV 538
Query: 543 SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
+Q+DK+D+E GL+KFDFLGL TL+I+D + + K + +PL+D ++
Sbjct: 539 TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFR 598
Query: 601 LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
L+ A T AVFQLES+GMK ++K +PD FE+IIAL++L+RPGP+ ++ NF RKHG
Sbjct: 599 NLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658
Query: 658 EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
E +YPD + K++L TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK
Sbjct: 659 EAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718
Query: 713 EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHXXXXXXXXXXXXXXXXHY 772
EM + R FQ GA K G+ A +IF+ +EKFAGYGFNKSH HY
Sbjct: 719 EMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778
Query: 773 SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
+ FMAA ++ MD+T K+ LV D K GL++LPP+IN Y F ++ +G I
Sbjct: 779 PAEFMAAVMTADMDNTEKVVGLV-DECKNMGLTVLPPDINSGLYRFN--VDDNGA---IV 832
Query: 833 YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYXXXXXXXXXXXXGAFDCFN 891
YG+GAIKG G+ IEAI+ R K G+F +LFDF RID K GA D
Sbjct: 833 YGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLG 892
Query: 892 EKRYMLVASIDVALKNAEK--TKKFINQLSLFK--NDDNNNLKEYLNYVKVPSWSKKQEL 947
R ++AS+D A++ A + + Q +F D +++ Y +VP W +K L
Sbjct: 893 PHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQ--KYTQVPEWPEKVRL 950
Query: 948 IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG 1004
E++ LG L+ H Y E+ ++ L+E PT S TV+G++ ++ TT RG
Sbjct: 951 EGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRG 1010
Query: 1005 -KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
+I ++ +DD S +EV++ ++ ++ L+++++L+VSG+V D F ++++A ++
Sbjct: 1011 TRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVM 1070
Query: 1064 DINVARILYGKKFSV 1078
D+ AR + + S+
Sbjct: 1071 DLGSAREKFARGLSI 1085
>TIGR_CMR|VC_2245 [details] [associations]
symbol:VC_2245 "DNA polymerase III, alpha subunit"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003141 InterPro:IPR004013
InterPro:IPR004365 InterPro:IPR004805 InterPro:IPR011708
InterPro:IPR016195 Pfam:PF01336 Pfam:PF02811 Pfam:PF07733
SMART:SM00481 GO:GO:0005737 GO:GO:0003677 GO:GO:0006260
EMBL:AE003852 GenomeReviews:AE003852_GR Gene3D:2.40.50.140
InterPro:IPR012340 GO:GO:0008408 GO:GO:0003887 eggNOG:COG0587
SUPFAM:SSF89550 TIGRFAMs:TIGR00594 KO:K02337 OMA:DFYLEIM
ProtClustDB:PRK05673 EMBL:U30472 PIR:G82100 RefSeq:NP_231876.1
ProteinModelPortal:P52022 SMR:P52022 DNASU:2613167 GeneID:2613167
KEGG:vch:VC2245 PATRIC:20083533 GO:GO:0009360 Uniprot:P52022
Length = 1159
Score = 2222 (787.2 bits), Expect = 2.6e-230, P = 2.6e-230
Identities = 469/1095 (42%), Positives = 688/1095 (62%)
Query: 3 PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
P+FIHLR+HS++S++DGL ++ +++ A PA+A+TD +NL G++KFY +A+N G+K
Sbjct: 4 PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 63
Query: 63 PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
PIIG D + +E + ++L LL KNN GY L L+SKAY+ + I WL +
Sbjct: 64 PIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE 123
Query: 123 NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
+ +GLI LSG G++G A+ G E + F D+FY+E+ R + +
Sbjct: 124 --HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESY 181
Query: 183 IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
+ +++A +LP+VAT+ + F+ + F AHE+R I +G L + +R K ++ +Q +
Sbjct: 182 LHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLR 241
Query: 243 TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
+++EM +LF DIP A+ N++EIAKRCN+ + G+ LP FPT + I DFL+ KS+ GL
Sbjct: 242 SEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-GMAIEDFLVMKSREGL 300
Query: 303 KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
++RL L+ DPE+ + Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301 EERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360
Query: 363 GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361 GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420
Query: 423 RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
YG+DAVSQI+TFGTMAAK IRDVGRVL + F D ISKL+P PG +TL A E
Sbjct: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFIAE 478
Query: 483 PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
P L E +EEV++LI+ + +EG RN G HAGGV+I+P+ + +F P+Y +
Sbjct: 479 PALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPV 538
Query: 543 SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
+Q+DK+D+E GL+KFDFLGL TL+I+D + + K + +PL+D ++
Sbjct: 539 TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFR 598
Query: 601 LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
L+ A T AVFQLES+GMK ++K +PD FE+IIAL++L+RPGP+ ++ NF RKHG
Sbjct: 599 NLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658
Query: 658 EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
E +YPD + K++L TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK
Sbjct: 659 EAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718
Query: 713 EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHXXXXXXXXXXXXXXXXHY 772
EM + R FQ GA K G+ A +IF+ +EKFAGYGFNKSH HY
Sbjct: 719 EMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778
Query: 773 SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
+ FMAA ++ MD+T K+ LV D K GL++LPP+IN Y F ++ +G I
Sbjct: 779 PAEFMAAVMTADMDNTEKVVGLV-DECKNMGLTVLPPDINSGLYRFN--VDDNGA---IV 832
Query: 833 YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYXXXXXXXXXXXXGAFDCFN 891
YG+GAIKG G+ IEAI+ R K G+F +LFDF RID K GA D
Sbjct: 833 YGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLG 892
Query: 892 EKRYMLVASIDVALKNAEK--TKKFINQLSLFK--NDDNNNLKEYLNYVKVPSWSKKQEL 947
R ++AS+D A++ A + + Q +F D +++ Y +VP W +K L
Sbjct: 893 PHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQ--KYTQVPEWPEKVRL 950
Query: 948 IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG 1004
E++ LG L+ H Y E+ ++ L+E PT S TV+G++ ++ TT RG
Sbjct: 951 EGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRG 1010
Query: 1005 -KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
+I ++ +DD S +EV++ ++ ++ L+++++L+VSG+V D F ++++A ++
Sbjct: 1011 TRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVM 1070
Query: 1064 DINVARILYGKKFSV 1078
D+ AR + + S+
Sbjct: 1071 DLGSAREKFARGLSI 1085
>TIGR_CMR|CBU_1337 [details] [associations]
symbol:CBU_1337 "DNA polymerase III, alpha subunit"
species:227377 "Coxiella burnetii RSA 493" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003141 InterPro:IPR004013
InterPro:IPR004365 InterPro:IPR004805 InterPro:IPR011708
InterPro:IPR016195 Pfam:PF01336 Pfam:PF02811 Pfam:PF07733
SMART:SM00481 GO:GO:0005737 GO:GO:0003677 GO:GO:0006260
EMBL:AE016828 GenomeReviews:AE016828_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0008408 GO:GO:0003887
SUPFAM:SSF89550 TIGRFAMs:TIGR00594 HOGENOM:HOG000021784 KO:K02337
RefSeq:NP_820326.1 ProteinModelPortal:Q83C00 PRIDE:Q83C00
GeneID:1209243 KEGG:cbu:CBU_1337 PATRIC:17931411 OMA:LAYFKTH
ProtClustDB:CLSK914709 BioCyc:CBUR227377:GJ7S-1328-MONOMER
Uniprot:Q83C00
Length = 1143
Score = 2207 (782.0 bits), Expect = 9.9e-229, P = 9.9e-229
Identities = 465/1082 (42%), Positives = 676/1082 (62%)
Query: 1 MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
M F+HL++HSEYSI+D ++RI+ +++ A + PA+A+TD NLF ++KFY+ A NKG
Sbjct: 1 MTISFVHLKIHSEYSIVDSVVRIDQLLQRAVDLKMPAVALTDEVNLFALVKFYRQAINKG 60
Query: 61 IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
IKPIIG ++ + E R L +N G+ L +LLS+AY+E I+ EWL
Sbjct: 61 IKPIIGSELLLA---EGDDVFRFTALCQNQIGFRHLIQLLSRAYVEGRQRDHVLIQWEWL 117
Query: 121 EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
+ +GLI LSGA G++G A+ R+ +AE RW FP FY+E+QR ++
Sbjct: 118 VQAN--EGLIILSGARRGNVGQALLQRRSPLAEERLTRWINHFPGRFYLELQRTRRDQEE 175
Query: 181 FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
I I +A +P+VAT+ + FL + +F AHE R CI +G +L + R ++++ +Q
Sbjct: 176 EYIHSVIELALKHRVPVVATNEVCFLSQGDFEAHEARVCIHQGYLLQDVNRPREYSDQQY 235
Query: 241 FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
FK+ EM LF DIP A++NT+EIAKRC++ L + LPKFP P N+ + D+ +++K
Sbjct: 236 FKSAEEMTALFSDIPEALENTVEIAKRCSVPLSLDEVFLPKFPVPANLKVEDYFRAQAKQ 295
Query: 301 GLKKRLLNL-YKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
GL +RL+ L K+ +K Y++RL+ EI I KM F+ YFLIV+DFI WAK + IP
Sbjct: 296 GLTRRLVGLEMKNNLTHK----DYEERLETEITVITKMGFASYFLIVADFIAWAKQHHIP 351
Query: 360 VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
VGPGRGSGA SLVAYSL IT++DPL ++LLFERFLN R+SMPDFDIDFC EGRDRVI Y
Sbjct: 352 VGPGRGSGAGSLVAYSLGITELDPLEHDLLFERFLNLERVSMPDFDIDFCMEGRDRVIDY 411
Query: 420 VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
V +RYG++AV+QI+T+GTMAA+ +RDVGRVL L Y + D I+KL+PF+ G +TL A+
Sbjct: 412 VAERYGQEAVAQIITYGTMAARAVLRDVGRVLGLPYGYVDKIAKLVPFELG--VTLEKAL 469
Query: 480 KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
++E LA+R +EEV+ LI+LA ++EG+ RN G HAGGV+IAP+KL +F PLY + G
Sbjct: 470 EQEEILAKRYAEDEEVKNLIDLAMKLEGLTRNAGKHAGGVVIAPTKLTDFVPLYSEPGSD 529
Query: 540 GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI---KKINTKTTNFSLNKLPLNDK 596
+++Q+DKDD+E +GL+KFDFLGL TL+I++ + I +KI +T + +PL+D
Sbjct: 530 HVVTQFDKDDVEAVGLVKFDFLGLRTLTIINWAVQNINAKRKIQNET-ELDIGTIPLDDP 588
Query: 597 DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
TY LLK T AVFQLES+GMK +++ +PD F +I+AL++L+RPGP+ +++ F
Sbjct: 589 KTYALLKSCATTAVFQLESRGMKELIRRLQPDNFADIMALVALFRPGPLQSGMVETFIAC 648
Query: 655 KHGEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSE 713
KHGE ++ P + +L TYG+++YQEQVMQIAQ+L GYSLG AD+LR A+GKKK E
Sbjct: 649 KHGEQSVHFLHPALEPILRTTYGVILYQEQVMQIAQVLAGYSLGAADVLRHAMGKKKPEE 708
Query: 714 MIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHXXXXXXXXXXXXXXXXHYS 773
M + R F G GL + AN+IF+ +EKF+GYGFNKSH HY
Sbjct: 709 MAKQRAVFLEGTKARGLKEALANQIFDLMEKFSGYGFNKSHSAAYALIAYQTAWLKAHYP 768
Query: 774 SFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRY 833
+ FMAA LS MD+T+K+ + + + L +LPPNIN S Y F + + G+ I Y
Sbjct: 769 AEFMAAVLSSDMDNTDKVVGFINEC-RDMNLELLPPNINWSHYPF--TVNTKGQ---IVY 822
Query: 834 GLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYXXXXXXXXXXXXGAFDCFNE 892
GLGAIKG G++ IV R+ G F LF+F R+D + GA D F
Sbjct: 823 GLGAIKGVGEAAAMNIVAYREAEGEFKGLFNFCSRVDLRKVNRRAVEPLIRSGAMDTFGV 882
Query: 893 KRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEE 950
R L S+ A + AE+ + + Q LF ++ + E +Y +VP W+ L E
Sbjct: 883 SRASLFESLTKAFQAAEQRNRDMILGQHDLF-GEEVKGIDE--DYTEVPEWNDSDRLRGE 939
Query: 951 KKVLGFCLSEHIF--CIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGK-IL 1007
K+ LG +S H CI E + +PI L S V+G++ ++ TT GK +
Sbjct: 940 KETLGLYVSGHPLQACIKEMKAVGAVPINHLSLSEKNSVVVAGMMMGMRTITTRSGKRMA 999
Query: 1008 IIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINV 1067
I+ ++D + ++V + N LY++ L ++ +L++ G V D + ++ A+ + ++
Sbjct: 1000 ILSLEDQTGKIDVTLFNDLYQQVAADLTDHAILVIRGTVGRDDYTGGQKMVADMLLTLDK 1059
Query: 1068 AR 1069
R
Sbjct: 1060 VR 1061
>TIGR_CMR|CPS_1570 [details] [associations]
symbol:CPS_1570 "DNA polymerase III, alpha subunit"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003141 InterPro:IPR004013
InterPro:IPR004365 InterPro:IPR004805 InterPro:IPR011708
InterPro:IPR016195 Pfam:PF01336 Pfam:PF02811 Pfam:PF07733
SMART:SM00481 GO:GO:0005737 GO:GO:0003677 GO:GO:0006260
EMBL:CP000083 GenomeReviews:CP000083_GR Gene3D:2.40.50.140
InterPro:IPR012340 GO:GO:0008408 GO:GO:0003887 eggNOG:COG0587
SUPFAM:SSF89550 TIGRFAMs:TIGR00594 HOGENOM:HOG000021784 KO:K02337
OMA:DFYLEIM ProtClustDB:PRK05673 RefSeq:YP_268312.1
ProteinModelPortal:Q485F3 SMR:Q485F3 STRING:Q485F3 GeneID:3520275
KEGG:cps:CPS_1570 PATRIC:21466345
BioCyc:CPSY167879:GI48-1651-MONOMER Uniprot:Q485F3
Length = 1186
Score = 2045 (724.9 bits), Expect = 1.5e-211, P = 1.5e-211
Identities = 425/905 (46%), Positives = 589/905 (65%)
Query: 3 PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
P+FIHLR+HS+YS+ DGL ++ ++ A PALA+TD +NL G++K+Y +A+ GIK
Sbjct: 18 PKFIHLRVHSDYSMCDGLKKVKPIVAKAVELNMPALALTDQTNLCGLVKYYHAAHGAGIK 77
Query: 63 PIIGCDVWI-TNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLE 121
PIIGCD W+ ++E+E++ SR+++L NN GY + EL+SKAY+ +A I WL
Sbjct: 78 PIIGCDFWVKSDELEDEL-SRIVVLTTNNVGYKNITELISKAYMRGHIQNKAVIDKSWLV 136
Query: 122 KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNF 181
+ Y++GLI LSG GDIG A+ G ++ + + + F +++E+ R + +
Sbjct: 137 E--YKEGLILLSGGREGDIGKALLKGNTELVDEMVSFYQQHFDRCYFLELVRTGRNDEEN 194
Query: 182 QIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNF 241
I + +A NLP+VAT+ + FL +F AHE+R I +G L + +R K+++ EQ
Sbjct: 195 YIHLAVELAEKENLPVVATNEVMFLSPNDFDAHEIRVAIHDGFTLDDKRRPKRYSSEQYL 254
Query: 242 KTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHG 301
+++ EM +LF DIP A+ N++EIAKRCN+ + G+ LP FPT + + INDF I S+ G
Sbjct: 255 RSEEEMCELFSDIPEALANSVEIAKRCNVTVTLGEYVLPDFPT-EGLEINDFFIKVSEKG 313
Query: 302 LKKRLLNLYKDPEIYKCEKLR--YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
L+KRL L+ D + ++R Y +RL E+E + M F GYFLIV +FIQW+K+N+IP
Sbjct: 314 LEKRLDQLF-DRQADDFAEIRKPYDERLAIELEVVNNMGFPGYFLIVMEFIQWSKDNNIP 372
Query: 360 VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
VGPGRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFDIDFC + RD VI +
Sbjct: 373 VGPGRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDRRDEVIDH 432
Query: 420 VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
V + YG+DAVSQI+TFGTMAAK IRDVGRVL Y F D ISKLIP PG +TL+ A
Sbjct: 433 VAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPTPG--MTLAKAF 490
Query: 480 KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
+EEP+L E + +V+ LI++ + +EG RN G HAGGV+I+P+ + +F PLY +
Sbjct: 491 EEEPKLPEVYAQDSDVKDLIDMCRILEGTTRNAGKHAGGVVISPTTITDFAPLYCDDEGK 550
Query: 540 GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKD 597
++Q+DK+D+E+ GL+KFDFLGL TL+IL I K I + K+ L DK
Sbjct: 551 NPVTQFDKNDVEDAGLVKFDFLGLRTLTILQWAIEMADAKLIKAGKEPIDITKIDLEDKA 610
Query: 598 TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
++ LL + T AVFQLES GMK+++ + KPD FE+IIAL++L+RPGP+ ++ NF RK
Sbjct: 611 SFKLLLASKTTAVFQLESSGMKSLIDKLKPDCFEDIIALVALFRPGPLQSGMVDNFIERK 670
Query: 656 HG-EYFNYPDP--RTKD---VLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
HG E +YPD + +D VL TYGI++YQEQVMQIAQ+L GYSLG AD+LRRA+GKK
Sbjct: 671 HGREEVSYPDATWQHEDLQPVLEPTYGIILYQEQVMQIAQVLAGYSLGGADMLRRAMGKK 730
Query: 710 KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHXXXXXXXXXXXXXXX 769
K EM + R F+ GA G+ A +IF+ +EKFAGYGFNKSH
Sbjct: 731 KPEEMAKQRAGFEQGAKDRGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWMK 790
Query: 770 XHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
H+ + FMAA +S MD+T KI LV D + +LPP++N +Y F + SD +
Sbjct: 791 THFPAPFMAAVMSADMDNTEKIVTLV-DECGNMEIDLLPPDVNAGQYKF--TVNSDNQ-- 845
Query: 830 KIRYGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYXXXXXXXXXXXXGAFD 888
I YG+GA+KG G+ IEAI++ R+ G FT+LFDF R+D K GA D
Sbjct: 846 -IVYGIGAVKGVGEGPIEAIISARQSDGPFTDLFDFCARLDLKKTNKRVLEKLIKSGAMD 904
Query: 889 CFNEK 893
K
Sbjct: 905 SLGPK 909
Score = 607 (218.7 bits), Expect = 1.1e-55, P = 1.1e-55
Identities = 173/524 (33%), Positives = 267/524 (50%)
Query: 647 LIKNFCRRKHG-EYFNYPDP--RTKD---VLSETYGIMVYQEQVMQIAQILGGYSLGQAD 700
++ NF RKHG E +YPD + +D VL TYGI++YQEQVMQIAQ+L GYSLG AD
Sbjct: 662 MVDNFIERKHGREEVSYPDATWQHEDLQPVLEPTYGIILYQEQVMQIAQVLAGYSLGGAD 721
Query: 701 LLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHXXXXXX 760
+LRRA+GKKK EM + R F+ GA G+ A +IF+ +EKFAGYGFNKSH
Sbjct: 722 MLRRAMGKKKPEEMAKQRAGFEQGAKDRGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 781
Query: 761 XXXXXXXXXXHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFP 820
H+ + FMAA +S MD+T KI LV D + +LPP++N +Y F
Sbjct: 782 VSYQTLWMKTHFPAPFMAAVMSADMDNTEKIVTLV-DECGNMEIDLLPPDVNAGQYKF-- 838
Query: 821 IIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYXXXXXXX 879
+ SD + I YG+GA+KG G+ IEAI++ R+ G FT+LFDF R+D K
Sbjct: 839 TVNSDNQ---IVYGIGAVKGVGEGPIEAIISARQSDGPFTDLFDFCARLDLKKTNKRVLE 895
Query: 880 XXXXXGAFDCFNEK------------RYMLVASIDVALKNAEKTKKF--INQLSLFK--N 923
GA D K R L ++ A+K AE+ K + Q LF N
Sbjct: 896 KLIKSGAMDSLGPKYVQGKAKEQGANRAALFETLPEAIKAAEQHAKAESLGQNDLFGLIN 955
Query: 924 DDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKP 983
D+ + ++ + +V +W +++ L EK+ LG L+ H Y +EI+++ L ++P
Sbjct: 956 DEQTDSRQ--TFKEVRAWPEEKWLDGEKETLGLYLTGHPINRYLSEIKKYSSSRLVVMQP 1013
Query: 984 T---YSCTVSGIITELKLKTTYRGKI-LIIVIDDNSNSVEVIINNQLYEKNKNILKENEL 1039
T G++ +++ RG+ ++ +DD S +++ + Y++ +L + +
Sbjct: 1014 TGRDRQAVAVGLVIGVRVLVNKRGRRWALVTLDDKSARMDIRLFPDDYDRFAEMLVNDAI 1073
Query: 1040 LIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFN----ISILKKILLR 1095
L+ SG+V D + + A I I AR Y V + + I ++L
Sbjct: 1074 LVCSGQVSFDDYSGGNTMTARDIMTITDARENYLSSIDVQVDNSLIADDFIEQFTQVLTP 1133
Query: 1096 FKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALINL 1139
FK + P ++Y + + ++ + ++V P D L L L
Sbjct: 1134 FK-EGTCPVRVFYQ-REEAQAMLELGVQWRVTPADMLLYELKTL 1175
>TIGR_CMR|GSU_1401 [details] [associations]
symbol:GSU_1401 "DNA polymerase III, alpha subunit"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003141 InterPro:IPR004013
InterPro:IPR004365 InterPro:IPR004805 InterPro:IPR011708
InterPro:IPR016195 Pfam:PF01336 Pfam:PF02811 Pfam:PF07733
SMART:SM00481 GO:GO:0005737 GO:GO:0003677 GO:GO:0006260
EMBL:AE017180 GenomeReviews:AE017180_GR Gene3D:2.40.50.140
InterPro:IPR012340 GO:GO:0008408 GO:GO:0003887 SUPFAM:SSF89550
TIGRFAMs:TIGR00594 KO:K02337 OMA:DFYLEIM HOGENOM:HOG000021785
RefSeq:NP_952453.1 ProteinModelPortal:Q74DB6 GeneID:2687861
KEGG:gsu:GSU1401 PATRIC:22025645 ProtClustDB:CLSK828333
BioCyc:GSUL243231:GH27-1368-MONOMER Uniprot:Q74DB6
Length = 1155
Score = 1931 (684.8 bits), Expect = 1.8e-199, P = 1.8e-199
Identities = 443/1172 (37%), Positives = 673/1172 (57%)
Query: 5 FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
F+HL LH++YS++DG +R+ D+++ + PA+AITD +FG ++FY +K +KP+
Sbjct: 3 FVHLHLHTQYSLLDGAIRLGDLVKKVKSHDMPAVAITDHGAMFGAMEFYLKCKDKDVKPV 62
Query: 65 IGCDVWITNEIENKKPSR---------LLLLVKNNNGYLQLCELLSKAYIENINYGRAEI 115
IG +V+I K +R LLLL +N GY L +L+S + E Y + I
Sbjct: 63 IGAEVYIAPGSRFVKEARGGEAGAGYHLLLLCENMTGYRNLSKLVSIGFKEGFYY-KPRI 121
Query: 116 RIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFK 175
E L +N +GLI LS G++ + R A + AR ++ +FPD +YIE+Q
Sbjct: 122 DKEVLAENA--EGLICLSACLKGEVAYLCERDRVAEAVDVARWYADLFPDRYYIELQENG 179
Query: 176 QPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKF 235
+ + + +A + LP+VAT+ +L + + AHEV CI G+ +++ R++
Sbjct: 180 LVEQDKANRGLLEVAREVGLPLVATNDCHYLNREDARAHEVLLCIQTGKTMNDPSRMRFS 239
Query: 236 TKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLI 295
E KT EM F+ P AI NT++IA+RC+L +F P+F P ++++ L
Sbjct: 240 VDEFYVKTPEEMAAAFHYAPEAISNTVKIAERCDLSFDFKTYHFPRFEPPVGLSLDQMLE 299
Query: 296 SKSKHGLKKRLLNLY-KDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAK 354
++ GL+ RL + K + ++ Y RL E+ I +M F GYFLIV+DFI WAK
Sbjct: 300 EAARTGLESRLTAIRAKHSSMTAEQEQAYWDRLAIELACIKQMGFPGYFLIVADFINWAK 359
Query: 355 NNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRD 414
++ IPVGPGRGS A SLVAY++ ITD+DP+ YNLLFERFLNP RISMPD D+DFC + R+
Sbjct: 360 DHGIPVGPGRGSAAGSLVAYAIRITDLDPIPYNLLFERFLNPERISMPDIDVDFCQDRRE 419
Query: 415 RVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLIT 474
VIQYV ++YG+D V QI+TFGTM+A+ IRDVGR LD+ Y D I+KL+P G IT
Sbjct: 420 EVIQYVTEKYGRDKVCQIITFGTMSARAVIRDVGRALDMTYGEVDRIAKLVPEVLG--IT 477
Query: 475 LSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYK 534
L AI +EP+L E + + V++L+E+A ++EG+ R+ HA GV++AP L FCP+YK
Sbjct: 478 LEKAIAQEPKLNEAAEADPRVKELLEVALRLEGLARHASTHAAGVVVAPDVLEQFCPVYK 537
Query: 535 QEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLN 594
+ + +QY +E+IGL+KFDFLGL L+++ + I+ K +F + L +
Sbjct: 538 DQKSGSLTTQYSMKYVEKIGLVKFDFLGLKNLTVIFNAVRHIRA--DKKPDFDIAALRDD 595
Query: 595 DKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFC 652
D+++Y LL+ NT VFQLES GM+ +L++ KP FE+IIA+ +LYRPGP+ ++ +F
Sbjct: 596 DEESYKLLQAGNTTGVFQLESSGMRELLRKLKPSCFEDIIAVCALYRPGPLGSGMVDDFI 655
Query: 653 RRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKT 711
RKHG + Y P+ + +L +TYG++VYQEQVMQIA+ L GYSLG ADLLRRA+GKK
Sbjct: 656 DRKHGRKKVVYDLPQLEPILKDTYGVIVYQEQVMQIARSLAGYSLGGADLLRRAMGKKDP 715
Query: 712 SEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHXXXXXXXXXXXXXXXXH 771
+EM + R F GA G+ KA IF+ + KFA YGFNKSH H
Sbjct: 716 AEMAKQRDIFLEGAKNNGIDLQKAGAIFDLMAKFAEYGFNKSHSAAYALVAYQTAYLKAH 775
Query: 772 YSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKI 831
Y FMAA L+ M +T+K+ + D + G+ +LPP+IN S F + S I
Sbjct: 776 YPVEFMAALLTEDMANTDKVVKNIADC-REMGIEVLPPDINASDLSFRVLGNS------I 828
Query: 832 RYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYXXXXXXXXXXXXGAFDCFN 891
R+GLGA+K G+S IEAI+ R G F ++F+F +R+D + GAFD
Sbjct: 829 RFGLGAVKNVGESAIEAIIEARGDGPFKDIFEFCERVDLRKVNKRVVESLIKCGAFDSTG 888
Query: 892 EKRYMLVASIDVALKNAEKTK--KFINQLSLFKNDD----NNNLKEYLNYVKVPSWSKKQ 945
+R L A+++ A+ +K + K Q+SLF ++ N N K + +P W K
Sbjct: 889 GRRSQLTAALEDAMSLGQKIQQEKESAQVSLFGAEEIVRTNGNGKGKVQLPDLPEWDDKF 948
Query: 946 ELIEEKKVLGFCLSEHIFCIYETEIRQFIPI---YLSELKPTYSCTVSGIITELKLKTTY 1002
L +EK+ LGF ++ H +E +IR+F L E + GI+ +K T
Sbjct: 949 LLAQEKEALGFFITGHPLGRHEKDIRRFTTADTATLEERADKSEVKICGIVATMKELMTK 1008
Query: 1003 RG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEK 1061
+G ++ ++D SVEV++ +++ K LK ++ L+V+G + D+ K+ +I A
Sbjct: 1009 KGDRMAFATLEDLVGSVEVVVFPEVFAKASEYLKSDDPLLVTGTI--DKGEKSAKIMASD 1066
Query: 1062 IF---DINV---ARILYGKKFSVMFNRTFNISILKKILLRFK--CKNGLPFVLYYCINKS 1113
+ D+ +R+++ + + +R + + LK I+LR CK L I
Sbjct: 1067 VVLLRDVTARQTSRVIFALQGDGL-DR-YRLEELKAIMLRHPGTCKATLTID----IPDQ 1120
Query: 1114 IKYEMKFPLNYKVQPIDDLKLALINLGLYNAI 1145
+ + P + V P D+L + + NL Y+A+
Sbjct: 1121 CRATIALPDSCMVAPSDELTVEVKNLFGYHAV 1152
>TIGR_CMR|CHY_1137 [details] [associations]
symbol:CHY_1137 "DNA polymerase III, alpha subunit"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR003141
InterPro:IPR004013 InterPro:IPR004805 InterPro:IPR011708
InterPro:IPR016195 Pfam:PF02811 Pfam:PF07733 SMART:SM00481
GO:GO:0005737 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006260 GO:GO:0008408 GO:GO:0003887 eggNOG:COG0587
SUPFAM:SSF89550 TIGRFAMs:TIGR00594 KO:K02337 OMA:DFYLEIM
HOGENOM:HOG000021785 RefSeq:YP_359983.1 ProteinModelPortal:Q3AD01
STRING:Q3AD01 GeneID:3727729 KEGG:chy:CHY_1137 PATRIC:21275414
ProtClustDB:PRK06826 BioCyc:CHYD246194:GJCN-1136-MONOMER
Uniprot:Q3AD01
Length = 1116
Score = 1822 (646.4 bits), Expect = 6.2e-188, P = 6.2e-188
Identities = 424/1057 (40%), Positives = 621/1057 (58%)
Query: 5 FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
F+HL HS YS++DG +I D++ A PALA+TD NLFG+I+FYK A +GIKPI
Sbjct: 3 FVHLHTHSCYSLLDGAGKIKDLVGRAVELKMPALALTDHGNLFGVIEFYKEAKAQGIKPI 62
Query: 65 IGCDVWITNEIE-NKKP------SRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRI 117
+G +V++ +K P + L+LL K+ GY L L+S++Y E Y + +
Sbjct: 63 LGVEVYVAPRTRFDKTPKIDDQLTHLVLLAKDRTGYQNLLRLVSRSYTEGYYY-KPRVDK 121
Query: 118 EWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIF-PDNFYIEIQRFKQ 176
+ L +N GLIALS G+I + +G+ + A A + IF +NFY+E+Q
Sbjct: 122 QLLAENS--QGLIALSSCLAGEIPELILSGQREKAREVAGIYRDIFGKENFYLELQYHGI 179
Query: 177 PNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFT 236
++ I ++ +N+P+VAT+ + ++ K H+V I G+ +++ R+K T
Sbjct: 180 SEQKVVNRELIALSKQLNIPLVATNDVHYILKEHAKTHDVLLAIQTGKSINDPGRMKFPT 239
Query: 237 KEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLIS 296
+E KT EM +F ++P A++NT+ IA++CNL+ EFG+ LP FP P+ +L
Sbjct: 240 EEFYLKTPYEMELIFGELPDALKNTLNIAEQCNLEFEFGRYLLPDFPVPEGKTPAQYLKE 299
Query: 297 KSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNN 356
GL KR Y +P E++ K RL E++ I +M FSGYFLIV DFI++A+
Sbjct: 300 LCFQGLYKR----YPNPG----EEV--KTRLLHELKIIEQMGFSGYFLIVWDFIRYAREK 349
Query: 357 SIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRV 416
I VGPGRGS A SLVAY+L ITDIDPL Y LLFERFLNP R+SMPD D+DFC E R V
Sbjct: 350 GIMVGPGRGSAAGSLVAYTLEITDIDPLKYGLLFERFLNPERVSMPDIDVDFCFERRQEV 409
Query: 417 IQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLS 476
I Y+ +YG+D V+QI+TFGTMAAK A+RDVGR LD YS D I+KLIP G ITL
Sbjct: 410 IDYLYQKYGEDRVAQIITFGTMAAKAAVRDVGRALDWPYSEVDKIAKLIPNVLG--ITLE 467
Query: 477 NAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYK-Q 535
AI+ P+L +N +VR+L++LA+Q+EG+ R+ +HA G++IAP ++ PL+K
Sbjct: 468 EAIETTPELKTLYQNNPKVRELLDLARQIEGMPRHASVHAAGLVIAPEEIDKHIPLFKTS 527
Query: 536 EGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLND 595
EG+ + +Q++KD +EE+GL+K D LGL TL++++K + FIKK K N L +PL+D
Sbjct: 528 EGV--VTTQFEKDTVEELGLLKIDLLGLRTLTVIEKALDFIKKQTGKEIN--LKDIPLDD 583
Query: 596 KDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCR 653
+ TY LL + +TV VFQLESQGM+ +LKE KP E++IAL++LYRPGP+ ++++F
Sbjct: 584 EKTYKLLGEGDTVGVFQLESQGMRQILKELKPTSIEDLIALVALYRPGPLGSGMVEDFIN 643
Query: 654 RKHGEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
R+HG YP P + +L ETYG++VYQEQVM IA +L G+SLG+ADLLRRA+GKKK
Sbjct: 644 RRHGRVPVEYPHPDLEPILRETYGVIVYQEQVMLIASVLAGFSLGEADLLRRAMGKKKPE 703
Query: 713 EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHXXXXXXXXXXXXXXXXHY 772
+ + F ++ G + KA EIFN IE FAGYGFNKSH ++
Sbjct: 704 IIAALKNDFIERSVARGYPREKAEEIFNLIEYFAGYGFNKSHSAAYAFVAYYTAWLKANF 763
Query: 773 SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
F+AA L D+ +K+ + +D + G+ +LPP+INLS+ F G+ +IR
Sbjct: 764 PVAFLAALLISVKDNLDKVTVYAEDCQRR-GIKVLPPDINLSEVDF----TISGQ--EIR 816
Query: 833 YGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYXXXXXXXXXXXXGAFDCFNE 892
+GL A+K G++ I+ ER+ G F + DF RIDKK GAF F
Sbjct: 817 FGLAAVKNVGEAAAAKIIEERQKGPFRDFNDFLHRIDKKTVNKRVIESLIKAGAFASFGF 876
Query: 893 KRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKK 952
R L+ ++D AL+ K + QL+L D Y N +SK + L EK+
Sbjct: 877 NRKTLLNNLDDALEFYSKKSNGV-QLTL--GDFLPEADRY-NLRLEEEFSKLELLRMEKE 932
Query: 953 VLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVID 1012
LG L+ H + I++ + ++ K Y ++ I + T + +++
Sbjct: 933 SLGLYLTGHPLAGLRSFIQKHCNLKENKEKIYYPAILAEI---KRTVTRRGEPMAFALLE 989
Query: 1013 DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLED 1049
+ +VE +I + +++L+E +L G V ED
Sbjct: 990 GLNQTVEAVIFPDCWLTYRDLLQEENILWFYGAVEED 1026
>TIGR_CMR|ECH_0922 [details] [associations]
symbol:ECH_0922 "DNA polymerase III, alpha subunit"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003141 InterPro:IPR004013
InterPro:IPR004805 InterPro:IPR011708 InterPro:IPR016195
Pfam:PF02811 Pfam:PF07733 SMART:SM00481 GO:GO:0005737 GO:GO:0003677
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006260 GO:GO:0008408
GO:GO:0003887 eggNOG:COG0587 SUPFAM:SSF89550 TIGRFAMs:TIGR00594
HOGENOM:HOG000021784 KO:K02337 OMA:DFYLEIM RefSeq:YP_507712.1
ProteinModelPortal:Q2GFS1 STRING:Q2GFS1 GeneID:3927989
KEGG:ech:ECH_0922 PATRIC:20577240 ProtClustDB:CLSK749545
BioCyc:ECHA205920:GJNR-925-MONOMER Uniprot:Q2GFS1
Length = 1120
Score = 1817 (644.7 bits), Expect = 2.1e-187, P = 2.1e-187
Identities = 405/1042 (38%), Positives = 615/1042 (59%)
Query: 5 FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
F+HLR HS+YS++ G+++I+ ++ PALA+TD NLFG ++F A + G++PI
Sbjct: 5 FVHLRSHSDYSLLHGMIKIDSLVNLCVQYNMPALALTDSGNLFGSLEFSDYASSLGVQPI 64
Query: 65 IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
IGC++ ++ L+LLVK+ GY + L+S ++ ++ + + +E L K
Sbjct: 65 IGCNIMMS--YNGDSIGELVLLVKDQIGYNNIVNLVSNSFKDSQSNKVNRVDLEKLIDLK 122
Query: 125 YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
DG+I L+G H G + + N I + F N Y+E+QR +
Sbjct: 123 --DGIIVLTGGHDGFLSQLLLG--NVIDYGIIDKLLLAFNGNLYVELQRHGMEEEKIIEK 178
Query: 185 QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
+N A +LP+VAT+ + F KK +FLAH+V +CI++G ++ R K FT+E FK+
Sbjct: 179 TLVNFAYEKDLPLVATNDVLFAKKNDFLAHDVLSCISDGNYIAQEGR-KMFTEEHYFKSS 237
Query: 245 SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
EM +LF DIP A+ NT+ IA+RC+ E KP LP FP N + LIS++ +GL
Sbjct: 238 DEMYRLFKDIPEAVSNTVLIAQRCSFMPETRKPMLPHFPCSSGKNESQELISQAINGLDN 297
Query: 305 RLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGR 364
RL K + + +Y +RL +E++ II M+++GYFLIVSDFI W+K N I VGPGR
Sbjct: 298 RL----KSKSLSTEQVSKYYERLHYELDIIISMDYAGYFLIVSDFICWSKRNDIMVGPGR 353
Query: 365 GSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRY 424
GSGA SLVA+SL ITD+DP+ + L+FERFLNP+RISMPDFDIDFC E RD VI+YV+ +Y
Sbjct: 354 GSGAGSLVAWSLQITDLDPIEFGLIFERFLNPDRISMPDFDIDFCQEKRDYVIEYVRKKY 413
Query: 425 GKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQ 484
G V+ I+TFG + AK +RDVGRV+ + Y D I K+IP P K +TLS AI+ +
Sbjct: 414 GY--VAHIITFGKLQAKAVLRDVGRVMQMPYFQVDRICKMIPHNPVKPVTLSEAIEMDKN 471
Query: 485 LAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQ 544
L + ++E V +L+E++ ++EG+ R+V +HA G++I +L PLY + I+Q
Sbjct: 472 LQKEQDDDETVAKLLEISLKLEGLYRHVSIHAAGIVICDRELEELLPLYYDSTSSLPITQ 531
Query: 545 YDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKK 604
Y+ E+ GL+KFDFLGL TL+++++ + + N + ++++PLND+ TY +L
Sbjct: 532 YNMKYTEKAGLVKFDFLGLRTLTVINQICHLV---NRGGHSVDISRIPLNDRKTYEMLSA 588
Query: 605 ANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFNYP 663
++V VFQLES GM+ ++ + KPD +IIALISLYRPGPMD I + RKHG E +Y
Sbjct: 589 GDSVGVFQLESSGMREVISKLKPDNINDIIALISLYRPGPMDNISIYIARKHGFEKPDYI 648
Query: 664 DPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQN 723
P +DVL ET+G+++YQEQVM+IA+I+ GYSLG+ADLLRRA+GKK EM R+ F N
Sbjct: 649 HPILEDVLRETFGVIIYQEQVMEIAKIMAGYSLGEADLLRRAMGKKIKEEMDNQRRTFIN 708
Query: 724 GAIKYGLSKHKANEIFNEIEKFAGYGFNKSHXXXXXXXXXXXXXXXXHYSSFFMAANLSL 783
GA+ G+ + KA+ IF+ + KFAGYGFNKSH +Y+ F A+++L
Sbjct: 709 GAVSNGIEEEKASYIFDLVAKFAGYGFNKSHAAAYALISYQTAYLKANYTLEFFTASMNL 768
Query: 784 SMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGK 843
+ D +K+++L A K G+ ILPP+IN SK F IE IRY LGA+K G+
Sbjct: 769 DIMDKDKLEMLCHQA-KLHGIEILPPDINSSKVLF--TIEGASS---IRYALGALKNVGQ 822
Query: 844 STIEAIVTERKFGFFTNLFDFTKRIDKKYXXXXXXXXXXXXGAFDCFNEKRYMLVASIDV 903
+ + IV + + +++DF R+ K G D + R L S+ +
Sbjct: 823 HSAKEIVDDVAY---KDIWDFIDRVSTKCVHKRILESIIKAGVLDSIHSNRKQLFESVFL 879
Query: 904 ALKNAEKTK--KFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEH 961
L E K NQ SLF + ++ L E ++ K + + I + + +
Sbjct: 880 FLDIIEYNKYNANFNQFSLFNDKNHYKLSETDDWTKEEKLNNEFSSIGFY-LNHHPMENY 938
Query: 962 IFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVI 1021
+ + + I FI Y + K +Y+ + GII+ +K+++T + K ++ + D N E++
Sbjct: 939 KYLLDKLNIG-FIH-Y--DDKSSYNNVIVGIISNVKVRSTNKDKFAVVTLSDPFNIHEIV 994
Query: 1022 I-NNQLYEKNKNILKENELLIV 1042
N + E NK++ +I+
Sbjct: 995 FYNGNIIEDNKDLFTTGASVII 1016
>TIGR_CMR|APH_1003 [details] [associations]
symbol:APH_1003 "DNA polymerase III, alpha subunit"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003141 InterPro:IPR004013
InterPro:IPR004805 InterPro:IPR011708 InterPro:IPR016195
Pfam:PF02811 Pfam:PF07733 SMART:SM00481 GO:GO:0005737 GO:GO:0003677
GO:GO:0006260 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0008408
GO:GO:0003887 eggNOG:COG0587 SUPFAM:SSF89550 TIGRFAMs:TIGR00594
HOGENOM:HOG000021784 KO:K02337 OMA:DFYLEIM ProtClustDB:CLSK749545
RefSeq:YP_505564.1 ProteinModelPortal:Q2GJ87 STRING:Q2GJ87
GeneID:3931100 KEGG:aph:APH_1003 PATRIC:20950740
BioCyc:APHA212042:GHPM-1011-MONOMER Uniprot:Q2GJ87
Length = 1127
Score = 1809 (641.9 bits), Expect = 1.5e-186, P = 1.5e-186
Identities = 397/1039 (38%), Positives = 612/1039 (58%)
Query: 5 FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
F+HLR HS+YS+++G++++ ++ PA+A+TD NLFG ++F A G++PI
Sbjct: 5 FVHLRTHSDYSLLEGMIKVESLVAMCVEQKMPAVALTDSGNLFGSLEFSDCAARAGLQPI 64
Query: 65 IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
IGC++ + N +LLL K+ G+ L L+S + N + R+ + K
Sbjct: 65 IGCNIMVEESGNNL--GNILLLAKSAEGFANLTNLISNGF-NNSQLEKIN-RVNIDDLLK 120
Query: 125 YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
GLIAL+G H + A+ N +D+ ++F DN Y+E+QR N +++
Sbjct: 121 LNGGLIALTGGHDDILARALLNNGDDLRA--LDSILQVFKDNVYVELQRHGL-NGQREVE 177
Query: 185 QF-INIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKT 243
+ I A N+P+VAT+ + F + +F AH++ +CI+ G + R + T E FKT
Sbjct: 178 ELLIRFAYERNIPLVATNDVFFACRGDFQAHDILSCISTGAYVVQEDR-HRLTPEHYFKT 236
Query: 244 QSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLK 303
SEM +LF D+P A+ NT IA+RC+ E KP+LP FP + + L + GL+
Sbjct: 237 ASEMYELFSDVPEAVLNTSLIAQRCSFIQEVRKPQLPHFPCFEGRTEAEELTECALAGLE 296
Query: 304 KRLLNLYKDPEIYKCEKLR--YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVG 361
RL K I E+ R Y KRL++E+ +I M +SGYFLIV+DFI+W+K N I VG
Sbjct: 297 IRL----KSKGIGDDEEQRDLYLKRLKYELGVVISMEYSGYFLIVADFIRWSKQNDIMVG 352
Query: 362 PGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVK 421
PGRGSGA SL+A+SL ITD+DP+ + L+FERFLNP+R+SMPDFDIDFC E RD+VI+YVK
Sbjct: 353 PGRGSGAGSLIAWSLGITDLDPIEFGLIFERFLNPDRVSMPDFDIDFCQEKRDKVIEYVK 412
Query: 422 DRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKE 481
++YG V+ I+TFG + A+ +RDVGRV+ + Y+ D I K+IP P +TL AI+
Sbjct: 413 EKYGY--VAHIITFGKLQARAVLRDVGRVMQIPYAQIDRICKMIPHDPISPVTLLEAIEM 470
Query: 482 EPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGI 541
+ L +N+E V +LIE++ ++EG+ R+ +HA G++I L NF PLY + +
Sbjct: 471 DQNLKAEQENDETVAKLIEISLKLEGLYRHASVHAAGIVICDQPLENFVPLYYDKSSSLP 530
Query: 542 ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNL 601
I+QY+ +E+ GL+KFDFLGL TL+++D+ I+ + L+K+PLNDK TY +
Sbjct: 531 ITQYNMKYVEKAGLVKFDFLGLRTLTMIDQICSLIR---ARGEEIELSKIPLNDKKTYEM 587
Query: 602 LKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYF 660
L +++ VFQLES GM+ + + +PD ++IIALISLYRPGPM+ I + RKHG E
Sbjct: 588 LSAGDSIGVFQLESAGMREAISKLRPDSIQDIIALISLYRPGPMNNIAIYISRKHGLEEP 647
Query: 661 NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
+Y P + VL ET+G+++YQEQVM+IA+IL GYSLG+ADLLRRA+GKK EM R+
Sbjct: 648 DYIHPMLECVLKETFGVIIYQEQVMEIARILAGYSLGEADLLRRAMGKKIKEEMDRQRQD 707
Query: 721 FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHXXXXXXXXXXXXXXXXHYSSFFMAAN 780
F +GA+ G+ + KA+ IF+ + KFAGYGFNKSH +Y+ F A+
Sbjct: 708 FVDGAVSNGIEESKASYIFDLVAKFAGYGFNKSHAAAYALISFQTAYLRANYTKEFFTAS 767
Query: 781 LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
++L +DD +K+ +L + A K CG+ ++PP+INLS F G IRYGLGA+K
Sbjct: 768 MNLDIDDKDKLGLLCQQA-KMCGIDVMPPDINLSSAEF----TVSGN--SIRYGLGALKN 820
Query: 841 TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYXXXXXXXXXXXXGAFDCFNEKRYMLVAS 900
G+ T I+ G +++++DF + + G+ D + R L AS
Sbjct: 821 VGQLTAHEILPVEG-GRYSDIWDFAGNVRIRSPLKRTLESLIKSGSLDGIHPNRRQLFAS 879
Query: 901 IDVALKNAEKTKKFIN--QLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCL 958
+ + L E K ++ Q SLF + L+E V W++ +++ E +GF L
Sbjct: 880 LGIILNIIENKKVSMDAHQFSLFSEKEEGQLEE------VDDWTEDEKIEHEFATIGFYL 933
Query: 959 SEHIFCIYETEIRQFIPIYLSELKPTYSCTVS---GIITELKLKTTYRGKILIIVIDDNS 1015
H YE + +F ++S + V+ G+++ +K+++ + + I+ + D
Sbjct: 934 RYHPLSKYEQVLGKFGVRFVSSTQEEKESGVTKRAGVVSSVKMRSANKERFAIVRVSDPH 993
Query: 1016 NSVEVII-NNQLYEKNKNI 1033
+V N++ E+N+++
Sbjct: 994 GVNDVAFYNSKTIEENRDL 1012
>UNIPROTKB|Q0C1C2 [details] [associations]
symbol:dnaE "DNA polymerase III, alpha subunit"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003141 InterPro:IPR004013
InterPro:IPR004365 InterPro:IPR004805 InterPro:IPR011708
InterPro:IPR016195 Pfam:PF01336 Pfam:PF02811 Pfam:PF07733
SMART:SM00481 GO:GO:0005737 GO:GO:0003677 GO:GO:0006260
GO:GO:0008408 EMBL:CP000158 GenomeReviews:CP000158_GR GO:GO:0003887
eggNOG:COG0587 SUPFAM:SSF89550 TIGRFAMs:TIGR00594
HOGENOM:HOG000021784 KO:K02337 OMA:DFYLEIM GO:GO:0009360
RefSeq:YP_760471.1 ProteinModelPortal:Q0C1C2 STRING:Q0C1C2
PRIDE:Q0C1C2 GeneID:4289984 KEGG:hne:HNE_1767 PATRIC:32216361
ProtClustDB:CLSK2532106 BioCyc:HNEP228405:GI69-1795-MONOMER
Uniprot:Q0C1C2
Length = 1140
Score = 1686 (598.6 bits), Expect = 1.6e-173, P = 1.6e-173
Identities = 398/1081 (36%), Positives = 604/1081 (55%)
Query: 3 PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
P FIHL + S +S+++ ++ D+ + PA+A+TD + LFG ++ + G++
Sbjct: 4 PVFIHLAIRSSFSLLESMITPADLAKWCKQYSMPAMAVTDRNCLFGALELSIKLSDYGVQ 63
Query: 63 PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
PI+ C +T+ + RL +++ GY +L L S+AY+E + G + ++L +
Sbjct: 64 PIMACCFDVTDGSPKAELFRLTAYAQDDVGYKRLMFLSSRAYLE-ADDGVPRLHKKYLLE 122
Query: 123 NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMNF 181
N +GLI L+G G++ + GR A + +P Y+EI R Q +
Sbjct: 123 NT--EGLILLTGGAEGEVARHILKGRLADARTELSTLATAYPGRCYVEITRHGTQEEIKS 180
Query: 182 QIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNF 241
+ + +A + LP+VATH +FLK + AH+ CIA G+ L R K+ +Q
Sbjct: 181 ETG-LVELAYELGLPLVATHDARFLKPEDVTAHDAMMCIANGQYLGQDDR-KRVEPDQYL 238
Query: 242 KTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHG 301
K+ EM LF D+P AI NT EIA RC+++ E KP LP F + + + + L +++ G
Sbjct: 239 KSPEEMEVLFADLPEAIANTSEIAIRCSVRAETRKPILPNF-SKEGRSEGEELALQARQG 297
Query: 302 LKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVG 361
L++RL + +Y E+ Y RL++E+ I +M F GYFLIVSDFI+WAK N IPVG
Sbjct: 298 LEERLAEADR---LY-AERQVYLDRLEYELGIIDRMGFPGYFLIVSDFIKWAKANGIPVG 353
Query: 362 PGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVK 421
PGRGSGA SLVA+ L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E R VI+YV+
Sbjct: 354 PGRGSGAGSLVAWVLLITDLDPLRFDLLFERFLNPERVSMPDFDVDFCQERRGEVIRYVR 413
Query: 422 DRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKE 481
++YG D+V+ I+TFGT+ AK +RDVGRV+ + Y D ++KLIPF P K TL AI
Sbjct: 414 EKYGADSVAMIITFGTLQAKAVVRDVGRVMQMPYGQVDRLAKLIPFNPAKPPTLDEAIAA 473
Query: 482 EPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGI 541
EP+ + I + V +LI+ A+ +EG+ RN G HA GV+IA L+ PLY
Sbjct: 474 EPKFDDEIAADARVGELIDTARALEGMYRNAGTHAAGVVIADRPLVELVPLYNDPRADLP 533
Query: 542 ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNL 601
+Q++ E GL+KFDFLGL TL+++D+ + FI++ + ++D TY L
Sbjct: 534 ATQFNMKYAEMAGLVKFDFLGLKTLTVIDRALNFIRRDGGDVGPAWRS---MDDPATYEL 590
Query: 602 LKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEY-F 660
+ T+ VFQLE GM++ L+ +P+ E++IA+ISLYRPGPM+ I + + K
Sbjct: 591 MASGETLGVFQLEGAGMRDTLRRVRPNNIEDLIAIISLYRPGPMENIPVYVQGKEDPASV 650
Query: 661 NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI-EHRK 719
Y P K VL TYG+ VYQEQVM++AQ + GYSLG+ADLLRRA+GKKK EMI + R+
Sbjct: 651 RYQHPDLKPVLEATYGVPVYQEQVMRMAQEIAGYSLGEADLLRRAMGKKKLEEMIAQRRR 710
Query: 720 FFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHXXXXXXXXXXXXXXXXHYSSFFMAA 779
F + A G+ ANEIF+ +EKFAGYGFNKSH HY F+AA
Sbjct: 711 FVEGAAANKGMKDSLANEIFDTMEKFAGYGFNKSHAAAYALIGYHTAFLKCHYPKEFLAA 770
Query: 780 NLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIK 839
++SL + +T+K+ ++A K L +L P+IN S+ F + DG I Y LGAIK
Sbjct: 771 SMSLDIGNTDKLAAFFQEA-KRLRLHVLAPDINSSQPDFD--VNEDG----IVYALGAIK 823
Query: 840 GTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYXXXXXXXXXXXXGAFDCFNEKRYMLV 898
G G ++ + R G F +L+DF +R+D K+ GA DC R +
Sbjct: 824 GVGVEAMKHVSAVRSEGGPFKDLYDFAERVDPKHVNKKALESLAKSGALDCLEGNRARVF 883
Query: 899 ASIDVALKN--AEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPS--WSKKQELIEEKKVL 954
A + + + + + Q LF + E+ PS W+ +Q+L EE K +
Sbjct: 884 AVVPMLAQYCASHAEDRSGGQGGLFGESEPALRPEF-----PPSRPWTAQQKLDEEFKSI 938
Query: 955 GFCLSEHIFCIYETEI-RQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILII 1009
GF S H T I R + + + + + GI+ K + RG K +
Sbjct: 939 GFYFSGHPLDDVLTSIDRDRVTLAMEVHERAGDGKPLEMIGIVRTRNDKPSKRGGKFAFL 998
Query: 1010 VIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVAR 1069
I D + +E+++ N+ ++ ++L+ + + ++ V + +R+N ++ ++ AR
Sbjct: 999 TISDPTGELEMMVFNEGLQQYGDLLQPGKAVAIT--VTAKLNGEELRLNLDRAVELEAAR 1056
Query: 1070 I 1070
+
Sbjct: 1057 L 1057
>TIGR_CMR|DET_1464 [details] [associations]
symbol:DET_1464 "DNA polymerase III, alpha subunit"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003141 InterPro:IPR004013
InterPro:IPR004365 InterPro:IPR004805 InterPro:IPR011708
InterPro:IPR016195 Pfam:PF01336 Pfam:PF02811 Pfam:PF07733
SMART:SM00481 GO:GO:0005737 GO:GO:0003677 GO:GO:0006260
EMBL:CP000027 GenomeReviews:CP000027_GR Gene3D:2.40.50.140
InterPro:IPR012340 GO:GO:0008408 GO:GO:0003887 eggNOG:COG0587
SUPFAM:SSF89550 TIGRFAMs:TIGR00594 KO:K02337 OMA:DFYLEIM
HOGENOM:HOG000021785 RefSeq:YP_182167.1 ProteinModelPortal:Q3Z6I2
STRING:Q3Z6I2 GeneID:3229319 KEGG:det:DET1464 PATRIC:21609954
ProtClustDB:CLSK836931 BioCyc:DETH243164:GJNF-1465-MONOMER
Uniprot:Q3Z6I2
Length = 1170
Score = 1634 (580.3 bits), Expect = 5.2e-168, P = 5.2e-168
Identities = 387/1078 (35%), Positives = 593/1078 (55%)
Query: 5 FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
F HL +H+E+S++DG+ RI+ ++ A ALAITD + GI +FYK A GIKPI
Sbjct: 2 FCHLHVHTEFSLLDGMCRISQLVARAKELGMEALAITDHGTMHGIPRFYKEAKEAGIKPI 61
Query: 65 IGCDVWIT------NEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIE 118
+G + ++ +K L+LL KNN GY L +L S+++IE Y + I E
Sbjct: 62 LGSEFYLAYGDRTAKTAADKNYYHLVLLAKNNKGYHNLIQLSSRSHIEGFYY-KPRIDKE 120
Query: 119 WLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPN 178
LEK Y +GL+ LS G++ + R D A A + K F +N+YIEIQR P+
Sbjct: 121 LLEK--YSEGLVCLSACPSGEVPRLILENRFDEAREAALWYKKTF-ENYYIEIQRHPMPD 177
Query: 179 MNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKE 238
+ I +A +++P+VAT+ +L K + H++ CI ++S+ KR+K
Sbjct: 178 LEKINSVLIPMARELDIPLVATNDTHYLDKEDAPYHDLLLCIGTNALVSDEKRMKMEGDY 237
Query: 239 QNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKS 298
K+ EM + + DIP AI+NT +IA+ CN+ L+FG+ LP+ P +++L
Sbjct: 238 FYLKSPEEMAEAYQDIPDAIENTAKIAEMCNVSLDFGRLHLPEIDIPAGKTPDEYLADLC 297
Query: 299 KHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
GL P+ Y RL++E++ I F+ YFL+ D I++ K +
Sbjct: 298 YEGL----------PKFYPDASQEILDRLKYELDVIKTTEFANYFLVTWDIIRFVKEKGL 347
Query: 359 PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
G RGS ASS+V Y L IT +DP+ Y L+FERFLN R MPD D+DF + R+ VI+
Sbjct: 348 YYGV-RGSAASSIVLYCLGITALDPIKYKLVFERFLNIERKEMPDIDMDFQDDRREEVIE 406
Query: 419 YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
YV +YG+D VSQI+TFGT+ AK A+RD GR L + Y+ D ++K+IPF +TL A
Sbjct: 407 YVVGKYGRDHVSQIITFGTLGAKAAVRDAGRALGMAYADVDRVAKVIPFSLH--MTLDKA 464
Query: 479 IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYK--QE 536
++E +L + + VR L++ A+++EG+ R+ HA GV+I+ L + PL + +E
Sbjct: 465 MEESTELKDMYNQDSVVRNLVDAARKIEGLSRHASTHAAGVVISKDPLTDHVPLQRLSKE 524
Query: 537 GMTGII-SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLND 595
G++ +QY +DI +IGL+K DFLGL L+IL K IK+ + + L +PL+D
Sbjct: 525 NNLGLVMTQYTMEDIAKIGLLKMDFLGLVNLNILGKACAVIKEYTGQDID-PL-AIPLDD 582
Query: 596 KDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRK 655
T+ LL TV VFQLE GM+ +KE KP F +I A+++LYRPGPM+ I F + K
Sbjct: 583 VKTFELLAAGETVGVFQLEGTGMRRYIKELKPTVFSDIGAMVALYRPGPMEQIPRFIKSK 642
Query: 656 HG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEM 714
HG E YP P + +L ETYG++VYQEQV+ IAQ GY+LGQAD+LR+A+GKK + M
Sbjct: 643 HGLEPITYPHPALEPILEETYGVIVYQEQVLFIAQTFSGYTLGQADILRKAMGKKIAAVM 702
Query: 715 IEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHXXXXXXXXXXXXXXXXHYSS 774
+ + F +GA+K G + A E+F +E FAGY FNK+H +Y
Sbjct: 703 QKQKANFIDGALKNGYTPEIAEEVFALVEPFAGYAFNKAHATSYALIAYQTAYLKANYPV 762
Query: 775 FFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYG 834
++ A L D T K+ V +A + G+ +LPP+IN S F I +++ KKIR+G
Sbjct: 763 EYITAYLQAFCDVTEKVVTAVTEA-RHMGIEVLPPDINRSGVNF-EIEQNEDGVKKIRFG 820
Query: 835 LGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYXXXXXXXXXXXXGAFDCFNEK 893
L A+K G + +E IV ERK G + ++ D +R + GA D ++
Sbjct: 821 LAAVKNVGVAAVEPIVAERKANGEYLSVEDLCRRAEGSSLNKRVMESLVKAGALDSLGDR 880
Query: 894 RYMLVASIDV-ALKNAEKTKKFINQLSLFK--NDDNNNLKEYLNYVKVPSWSKKQELIEE 950
+L ++ +L E+ K NQ ++F + L + P + +++L E
Sbjct: 881 GTLLFNLPNILSLAQREQKLKDSNQTTMFDLFGQQSPMPMPSLEMAESPV-TTREKLQWE 939
Query: 951 KKVLGFCLSEHIFCIYET---EIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKIL 1007
K+++G +SEH F Y + E+ + + E TV+G++ +++ T GK
Sbjct: 940 KELVGIFISEHPFTPYASAAQEVTTALCGQIDEELDNQPVTVAGMVASVRVSATREGKPF 999
Query: 1008 IIV-IDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK--VLEDRFLKNIRINAEKI 1062
++ I+D VEV ++Y K + +E +L+V GK V DR + I+AEK+
Sbjct: 1000 VMAEIEDLVGRVEVAAWPKVYAATKALWEEGNILLVEGKAVVRGDR----VSIHAEKV 1053
>TIGR_CMR|SPO_0656 [details] [associations]
symbol:SPO_0656 "DNA polymerase III, alpha subunit"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009360 "DNA polymerase III complex"
evidence=ISS] InterPro:IPR003141 InterPro:IPR004013
InterPro:IPR004805 InterPro:IPR011708 InterPro:IPR016195
Pfam:PF02811 Pfam:PF07733 SMART:SM00481 GO:GO:0005737 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0006260 GO:GO:0008408
GO:GO:0003887 SUPFAM:SSF89550 TIGRFAMs:TIGR00594
HOGENOM:HOG000021784 KO:K02337 OMA:DFYLEIM ProtClustDB:PRK05673
RefSeq:YP_165911.1 ProteinModelPortal:Q5LVP4 GeneID:3194643
KEGG:sil:SPO0656 PATRIC:23374579 Uniprot:Q5LVP4
Length = 1187
Score = 1607 (570.8 bits), Expect = 3.8e-165, P = 3.8e-165
Identities = 357/878 (40%), Positives = 513/878 (58%)
Query: 3 PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
P+FIHLRLH+EYS+++G +R+ + PA+A+TD +NLF ++F A GI+
Sbjct: 5 PRFIHLRLHTEYSLLEGAVRLKKLPALCDKMGMPAVAVTDTNNLFAALEFSVGASGAGIQ 64
Query: 63 PIIGC--DVWITNEIEN---KKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRI 117
PIIGC D+ + K P+ L+LL +N GY L +L S Y++ ++ +
Sbjct: 65 PIIGCQLDLAYVAAMPGERPKPPAPLVLLAQNEAGYENLMKLNSCLYVDKGGQ-LPQVTL 123
Query: 118 EWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFK-- 175
E LE DGLI LSG G +G +Q G+ AE R + IF D FYIE+QR
Sbjct: 124 EELEA--LGDGLICLSGGPDGPVGRLLQAGQRPAAEALVDRLAAIFADRFYIELQRHPGE 181
Query: 176 --QPNMNFQIQQ-FINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRI 232
P ++ + +A LP+VAT+ + F + + AH+ CIA+G + +
Sbjct: 182 GGAPEAERLTERGHVEMAYAKGLPLVATNDVYFPEAGMYEAHDALICIADGAYVDQAEGR 241
Query: 233 KKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININD 292
++ T + K+ EM LF D+P AI+NT+EIA+RC P LPKF + + +
Sbjct: 242 RRLTAQHYLKSPQEMATLFADLPEAIENTVEIARRCAFMAYRRDPILPKFADDEVVELR- 300
Query: 293 FLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQW 352
++ GL+ RL + P E Y+KRL FE++ I M F GYFLIV+DFI+W
Sbjct: 301 ---RQANEGLQARLAVI---PHAVSAED--YQKRLDFELDIIEGMGFPGYFLIVADFIKW 352
Query: 353 AKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEG 412
AK++ IPVGPGRGSGA SLVAY+L+ITD+DPL Y+LLFERFLNP R+SMPDFDIDFC +
Sbjct: 353 AKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDIDFCMDR 412
Query: 413 RDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKL 472
R+ VI+YV+++YG+D V QI+TFG + +K A+RD+GRVL + Y D +SK+IP + K
Sbjct: 413 REEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSKMIPVEGVKP 472
Query: 473 ITLSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPL 532
+++ A+K+EP+L E +NEE V +L+ +QVEG++RN HA GV+I L PL
Sbjct: 473 VSIEKALKDEPRLREEARNEEVVDRLLTYGQQVEGLLRNASTHAAGVVIGDRPLDALVPL 532
Query: 533 YKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKIN------------ 580
Y+ +Q++ +E+ GL+KFDFLGL TL+++ + I K
Sbjct: 533 YQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFKSGRPLHVAADGRQL 592
Query: 581 ---TKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALI 637
+ +N +PL+D TY L A TVAVFQ+ES GM + LK KP E+I+AL+
Sbjct: 593 YDPAEGAENQINAIPLDDVPTYKLYSAAKTVAVFQVESSGMMDALKRMKPTCIEDIVALV 652
Query: 638 SLYRPGPMDLIKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSL 696
+LYRPGPM+ I +C K+G P +L ET GI+VYQEQVMQIAQ++ GYSL
Sbjct: 653 ALYRPGPMENIPVYCEVKNGLREITSVHPLIDHILEETQGIIVYQEQVMQIAQVMAGYSL 712
Query: 697 GQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHXX 756
G ADLLRRA+GKK M R F+ GA + G+ KA+E+F+ +EKFA YGFNKSH
Sbjct: 713 GGADLLRRAMGKKIKEAMDAERPKFETGAAENGVDAKKASEVFDLLEKFANYGFNKSHAA 772
Query: 757 XXXXXXXXXXXXXXHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKY 816
++ FMA ++ + T+K+ + ++ K GL +PP +N S+
Sbjct: 773 AYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKGLGLPYVPPCVNRSQA 832
Query: 817 YFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERK 854
F ++ + + Y LGA+K G + +V R+
Sbjct: 833 TF-DVVGGE-----LVYALGALKNVGVEAMRLVVEGRQ 864
Score = 585 (211.0 bits), Expect = 2.9e-53, P = 2.9e-53
Identities = 159/483 (32%), Positives = 247/483 (51%)
Query: 588 LNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDL 647
+N +PL+D TY L A TVAVFQ+ES GM + LK KP E+I+AL++LYRPGPM+
Sbjct: 603 INAIPLDDVPTYKLYSAAKTVAVFQVESSGMMDALKRMKPTCIEDIVALVALYRPGPMEN 662
Query: 648 IKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAI 706
I +C K+G P +L ET GI+VYQEQVMQIAQ++ GYSLG ADLLRRA+
Sbjct: 663 IPVYCEVKNGLREITSVHPLIDHILEETQGIIVYQEQVMQIAQVMAGYSLGGADLLRRAM 722
Query: 707 GKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHXXXXXXXXXXXX 766
GKK M R F+ GA + G+ KA+E+F+ +EKFA YGFNKSH
Sbjct: 723 GKKIKEAMDAERPKFETGAAENGVDAKKASEVFDLLEKFANYGFNKSHAAAYAVVSYQTA 782
Query: 767 XXXXHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPI----I 822
++ FMA ++ + T+K+ + ++ K GL +PP +N S+ F + +
Sbjct: 783 WLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKGLGLPYVPPCVNRSQATFDVVGGELV 842
Query: 823 ESDGKHKKI-----RYGLGAIKGT-----GKSTIEAIVTER-KFGFFTNLFDFTKRIDKK 871
+ G K + R + +G S A +R + F LFDF +R+D K
Sbjct: 843 YALGALKNVGVEAMRLVVEGRQGAHPPEPASSRDAARRPDRAEERPFVTLFDFARRVDLK 902
Query: 872 YXXXXXXXXXXXXGAFDCFNEKRYMLVASID--VALKNAEKTKKFINQLSLFKNDDNNNL 929
GAFD + R + SI+ +A A +K NQ+SLF + ++L
Sbjct: 903 KVGKRPLEMMARAGAFDQLDPNRRRVFDSIEALMAYSGAIFEQKSSNQVSLF-GEAGDDL 961
Query: 930 KEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELK------P 983
E + P W + L EE K +GF LS H Y +++ + L E+ P
Sbjct: 962 PEP-RLAQAPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRKGVLTLDEVTEQARSGP 1020
Query: 984 TYSCTVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIV 1042
+ ++G++ + + + RG + + D + + EV + +++ EK++ L+ +++
Sbjct: 1021 VLA-KMAGVVAGRQERKSARGNRFAFAQMSDPTGAFEVTLFSEVLEKSREFLETGSHVVL 1079
Query: 1043 SGK 1045
+ +
Sbjct: 1080 TAE 1082
>TIGR_CMR|NSE_0167 [details] [associations]
symbol:NSE_0167 "DNA polymerase III, alpha subunit"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003141 InterPro:IPR004013
InterPro:IPR004805 InterPro:IPR011708 InterPro:IPR016195
Pfam:PF02811 Pfam:PF07733 SMART:SM00481 GO:GO:0005737 GO:GO:0003677
GO:GO:0006260 GO:GO:0008408 EMBL:CP000237 GenomeReviews:CP000237_GR
GO:GO:0003887 eggNOG:COG0587 SUPFAM:SSF89550 TIGRFAMs:TIGR00594
HOGENOM:HOG000021784 KO:K02337 RefSeq:YP_506064.1
ProteinModelPortal:Q2GEN2 STRING:Q2GEN2 GeneID:3932104
KEGG:nse:NSE_0167 PATRIC:22680433 OMA:IISLFRP
ProtClustDB:CLSK2527978 BioCyc:NSEN222891:GHFU-200-MONOMER
Uniprot:Q2GEN2
Length = 1077
Score = 1377 (489.8 bits), Expect = 8.5e-165, Sum P(3) = 8.5e-165
Identities = 307/760 (40%), Positives = 450/760 (59%)
Query: 137 LGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINLP 196
LG+ I N + AE ++F + ++EIQR N + + ++ I + N+P
Sbjct: 122 LGEFFIDAINSYSIDAETLVSDLKQVFGKDLFVEIQRLG--NQSAE-EKLIQLGYEHNIP 178
Query: 197 IVATHPIQFLKKTEFL-AHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
VAT+ + F T+F AH+V TCI +++ R+ ++ E FK+ EMI LF D+
Sbjct: 179 FVATNDVLF-PDTDFREAHDVLTCIGSLTYVNDINRVH-YSPESYFKSAEEMIALFADLK 236
Query: 256 SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
A+ NT+ IA+RC+ E P LPKF ++ +D L S GL +R+ ++
Sbjct: 237 EALHNTVLIARRCSFMPEVRSPILPKFEC--EMDESDELRRLSYIGLHRRM-----GADV 289
Query: 316 YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
+ Y RL++E+ II MN++GYFLIV+DFI+W+K N I VGPGRGSG S+VA+
Sbjct: 290 PQ----NYLDRLEYELGIIIDMNYAGYFLIVADFIRWSKANGIVVGPGRGSGVGSIVAWC 345
Query: 376 LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
L IT +DPL + L FERFLNP R+SMPDFD+DFC E R VI+YV+ +YG V+QI+TF
Sbjct: 346 LGITGLDPLKFALFFERFLNPVRVSMPDFDVDFCQEKRHLVIEYVRKKYGH--VAQIMTF 403
Query: 436 GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
GT+ + A+RDVGRVL L Y D I K+IP P I+L AI + L +++E +
Sbjct: 404 GTLQPRAALRDVGRVLQLPYGRVDRICKMIPNNPANPISLQEAINLDKDLQRESEDDESI 463
Query: 496 RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
+L++LA ++EG +R+ HA G++I+ + + ++ P+Y + ++QY +E+ GL
Sbjct: 464 AKLLDLALKLEGTLRHTSTHAAGIVISDTPIEDYLPVYHDKESDIPVTQYSMKYVEKAGL 523
Query: 556 IKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLES 615
IKFDFLGL TL+++++ ++ K NF ++ +PL+DK TY+LL N + VFQL++
Sbjct: 524 IKFDFLGLKTLTVINQACLLVR---LKNPNFDIDSIPLDDKRTYDLLSAGNAIGVFQLDN 580
Query: 616 QGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFNYPDPRTKDVLSET 674
M LK PD FE+IIALISL RPGPM I + RKHG E YP P + L ET
Sbjct: 581 AYMCETLKRLHPDCFEDIIALISLNRPGPMANIPTYIARKHGKEAVKYPHPLLESSLKET 640
Query: 675 YGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHK 734
+G+++YQEQVM++ ++L GY+L +AD+LRR +GKK +EM E + F GA + G+ +
Sbjct: 641 FGVVIYQEQVMEMVRLLAGYTLAEADILRRVMGKKIRAEMSEQAEKFVEGAKRNGIETER 700
Query: 735 ANEIFNEIEKFAGYGFNKSHXXXXXXXXXXXXXXXXHYSSFFMAANLSLSMDDTNKIKIL 794
A EIF IEKFAGYGFNKSH ++ F A L+L + T+K+ IL
Sbjct: 701 AQEIFEMIEKFAGYGFNKSHAAAYALISYQTAFLKANFPIEFTTAALNLELHHTDKLAIL 760
Query: 795 VKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERK 854
++DA K G++ILPP+IN SK F IE + IRY L A+K G++ AI +R+
Sbjct: 761 IQDA-KNYGITILPPDINKSKILFS--IEDNA----IRYSLAALKNVGEAAASAI--QRR 811
Query: 855 FGFFTNLFDFTKRIDKKYXXXXXXXXXXXXGAFDCFNEKR 894
F T + + + +D K GA D + R
Sbjct: 812 SPFAT-IPELQRCLDGKIVHRKAVESLIKSGATDVLSPDR 850
Score = 187 (70.9 bits), Expect = 8.5e-165, Sum P(3) = 8.5e-165
Identities = 52/169 (30%), Positives = 89/169 (52%)
Query: 5 FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
F+HLR+ S+YS++ + + +++ A PA+A+TD+ + G ++F + A GI+PI
Sbjct: 6 FVHLRVRSDYSLLRAVTKPRRIVDLARAAGMPAVALTDIDTMAGALEFAEYAKASGIQPI 65
Query: 65 IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
IG D+ I++ N+ SR+LL+ KN GY + +L I ++ R+ E
Sbjct: 66 IGIDLSISH---NRVDSRVLLIAKNEEGYHNMIKLSG---IVSLR------RVALNEVFT 113
Query: 125 YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQR 173
+ GLI L LG+ I N + AE ++F + ++EIQR
Sbjct: 114 HSKGLILL----LGEFFIDAINSYSIDAETLVSDLKQVFGKDLFVEIQR 158
Score = 77 (32.2 bits), Expect = 8.5e-165, Sum P(3) = 8.5e-165
Identities = 41/162 (25%), Positives = 74/162 (45%)
Query: 938 VPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELK 997
V W+ + E GF L +H Y R+F+ +L P ++G+ITEL+
Sbjct: 884 VKPWNFFERTQCEFDAFGFFLFDHPLFPY----RKFL-----KLSPNQ---IAGVITELR 931
Query: 998 LKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKN--- 1054
+++ RG V+ + ++V I YE + I EL +V KV+ LK+
Sbjct: 932 IRS--RGDRKFAVM--HVSTVNDIYTVMFYESDV-IDSRRELFVVGVKVVLT-LLKSDNG 985
Query: 1055 -IRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLR 1095
+ N ++ + + Y +F+++ NR ++ LK +L R
Sbjct: 986 YVCTNLAELHEFIFSN--YNGRFAILVNRKEQVTALKDVLRR 1025
>TIGR_CMR|BA_4849 [details] [associations]
symbol:BA_4849 "DNA polymerase III, alpha subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003141 InterPro:IPR004013
InterPro:IPR004365 InterPro:IPR004805 InterPro:IPR011708
InterPro:IPR016195 Pfam:PF01336 Pfam:PF02811 Pfam:PF07733
SMART:SM00481 GO:GO:0005737 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006260 GO:GO:0008408
GO:GO:0003887 SUPFAM:SSF89550 TIGRFAMs:TIGR00594 KO:K02337
OMA:DFYLEIM HOGENOM:HOG000021785 RefSeq:NP_847052.1
RefSeq:YP_021493.1 RefSeq:YP_030746.1 ProteinModelPortal:Q81KY5
IntAct:Q81KY5 DNASU:1084005 EnsemblBacteria:EBBACT00000009600
EnsemblBacteria:EBBACT00000014629 EnsemblBacteria:EBBACT00000024002
GeneID:1084005 GeneID:2818824 GeneID:2851545 KEGG:ban:BA_4849
KEGG:bar:GBAA_4849 KEGG:bat:BAS4498 ProtClustDB:PRK06920
BioCyc:BANT260799:GJAJ-4556-MONOMER
BioCyc:BANT261594:GJ7F-4711-MONOMER Uniprot:Q81KY5
Length = 1108
Score = 1388 (493.7 bits), Expect = 3.9e-155, Sum P(2) = 3.9e-155
Identities = 328/837 (39%), Positives = 476/837 (56%)
Query: 76 ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
E ++ S L+L+ N Q +S + + G I +WL Y GLIA+S
Sbjct: 72 EEEEKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---IPKKWLAH--YAKGLIAISPG 126
Query: 136 HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFK-QPNMNFQIQQFINIASNIN 194
G+I + + AE AR + +F NFY+ +Q Q + Q ++ + +N
Sbjct: 127 KDGEIEQLLLEDKESQAEEVARAYQNMF-GNFYMSLQHHAIQDELLLQ-EKLPAFMNRVN 184
Query: 195 LPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDI 254
+P+VAT+ ++++ +++ L HE + G +++ R + T + K+ EM LF +
Sbjct: 185 IPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTDQYYLKSSDEMEALFSHV 244
Query: 255 PSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISK-SKHGLKKRLLNLYKDP 313
AI NT+EIA+RC +++ F +LPKFP P N ND + + + GL+KR Y P
Sbjct: 245 EEAIYNTVEIAERCRVEIPFHVNQLPKFPVPSN-ETNDMYLRRVCEEGLQKR----YGTP 299
Query: 314 EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVA 373
K + RL E+ I M FS YFLIV DF+++A N I GPGRGS A SLV+
Sbjct: 300 ------KEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAHENHILTGPGRGSAAGSLVS 353
Query: 374 YSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIV 433
Y L ITDIDP+ Y+LLFERFLNP R+++PD DIDF RD +I+YVKD+YG+ V+QIV
Sbjct: 354 YVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRDEMIRYVKDKYGQLRVAQIV 413
Query: 434 TFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEE 493
TFGT+AAK AIRD+ RV+ L D SKLIP K G ITL +A +E L E I+
Sbjct: 414 TFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG--ITLKDAYEESQSLREFIQGNL 471
Query: 494 EVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGI-ISQYDKDDIEE 552
++ E+AK+VEG+ R+ +HA GV+++ L + QEG + ++QY D +EE
Sbjct: 472 LHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI--QEGHNDVYVTQYPADALEE 529
Query: 553 IGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQ 612
+GL+K DFLGL L++L+ I FI + K + LPL D T+ LL + +T VFQ
Sbjct: 530 LGLLKMDFLGLRNLTLLENIIKFIVQKTGK--EIDIRNLPLQDAKTFQLLGRGDTTGVFQ 587
Query: 613 LESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEY-FNYPDPRTKDVL 671
LES GM+N+L+ KP+ FE+I+A+ SLYRPGPM+ I F KHG+ Y P K +L
Sbjct: 588 LESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKRKIEYLHPDLKPIL 647
Query: 672 SETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLS 731
TYG++VYQEQ+MQIA L G+SLG+ADLLRRA+ KK + + RK F G ++ G
Sbjct: 648 ERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQERKHFVQGCLQNGYD 707
Query: 732 KHKANEIFNEIEKFAGYGFNKSHXXXXXXXXXXXXXXXXHYSSFFMAANLSLSMDDTNKI 791
+ A +I++ I +FA YGFN+SH +Y+ FM A LS ++ + +KI
Sbjct: 708 ETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMTALLSSAIGNEDKI 767
Query: 792 KILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVT 851
+++ K G +LPP++ S Y F IE + IRY L +I+ G +T+ A++
Sbjct: 768 VQYIRET-KRKGFHVLPPSLQRSGYNFQ--IEGNA----IRYSLLSIRNIGMATVTALLE 820
Query: 852 ERKFGFFTNLFDFTKRIDKKYXXXXXXXXXXXXGAFDCFNEKRYMLVASIDVALKNA 908
ER+ F +LF+F R+ K+ G FD F R L S+ AL+ A
Sbjct: 821 EREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKGALEYA 877
Score = 386 (140.9 bits), Expect = 1.9e-41, Sum P(2) = 1.9e-41
Identities = 95/304 (31%), Positives = 164/304 (53%)
Query: 4 QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
+F+HL+ + +S++ +I++++ A +LAITD + ++G+I FYK+ GI P
Sbjct: 2 KFVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHP 61
Query: 64 IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKN 123
IIG I +E E +K L+LL +N GY L ++ S ++ + I +WL
Sbjct: 62 IIGLTASIFSE-EEEKSYPLVLLAENEIGYQNLLKISSSIMTKS----KEGIPKKWLAH- 115
Query: 124 KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFK-QPNMNFQ 182
Y GLIA+S G+I + + AE AR + +F NFY+ +Q Q + Q
Sbjct: 116 -YAKGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMF-GNFYMSLQHHAIQDELLLQ 173
Query: 183 IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
++ + +N+P+VAT+ ++++ +++ L HE + G +++ R + T + K
Sbjct: 174 -EKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTDQYYLK 232
Query: 243 TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISK-SKHG 301
+ EM LF + AI NT+EIA+RC +++ F +LPKFP P N ND + + + G
Sbjct: 233 SSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVPSN-ETNDMYLRRVCEEG 291
Query: 302 LKKR 305
L+KR
Sbjct: 292 LQKR 295
Score = 146 (56.5 bits), Expect = 3.9e-155, Sum P(2) = 3.9e-155
Identities = 54/219 (24%), Positives = 99/219 (45%)
Query: 831 IRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYXXXXXXXXXXXXGAFDCF 890
IRY L +I+ G +T+ A++ ER+ F +LF+F R+ K+ G FD F
Sbjct: 800 IRYSLLSIRNIGMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDF 859
Query: 891 NEKRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEE 950
R L S+ AL+ A + + + K YV+ S ++L +E
Sbjct: 860 GVSRTNLWKSLKGALEYANLARDLGDAVPKSK------------YVQGEELSFIEQLNKE 907
Query: 951 KKVLGFCLSEHIFCIYETEIRQF-IPIYLSELKPTYSCTVSGI-ITELK-LKTTYRGKIL 1007
K+VLGF LS + Y ++ IP ++ + + IT ++ ++T K+
Sbjct: 908 KEVLGFYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQRAIVYITSVRVIRTKKLQKMA 967
Query: 1008 IIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKV 1046
I D ++ +E ++ + Y + L+E +++V G +
Sbjct: 968 FITFCDQNDEMEAVLFPETYIHFSDKLQEGAIVLVDGTI 1006
Score = 54 (24.1 bits), Expect = 2.0e-145, Sum P(2) = 2.0e-145
Identities = 31/113 (27%), Positives = 51/113 (45%)
Query: 888 DCFNEKRYMLVASIDVALKNAEKTKKFINQL-SLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
D E +LV + L+N K + +N L L + D K+ YVK+PS +K+
Sbjct: 992 DKLQEGAIVLVDGT-IELRN-HKLQWIVNGLYPLEEMDAYEEKKDASVYVKLPSQYEKKL 1049
Query: 947 LIEEKKVLGFCLS--EHIFCIYETEIRQFIPIYLS-ELKPTYSCTVSGIITEL 996
L + K+L F S + YE E + + + S + P+ C G + E+
Sbjct: 1050 LNQVTKIL-FDYSGFAKVLIYYEKE-HKMVQLSRSLSIHPSEECL--GALREI 1098
Score = 50 (22.7 bits), Expect = 2.2e-31, Sum P(2) = 2.2e-31
Identities = 18/73 (24%), Positives = 39/73 (53%)
Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYG--KKFSV 1078
++ + +KN++IL + V G L++ + + +AEKI+D+ V YG + +V
Sbjct: 677 LLRRAVSKKNRDILDQERKHFVQG-CLQNGYDET---SAEKIYDLIVRFANYGFNRSHAV 732
Query: 1079 MFNRT-FNISILK 1090
++ + ++ LK
Sbjct: 733 AYSMIGYQLAYLK 745
Score = 44 (20.5 bits), Expect = 1.2e-29, Sum P(3) = 1.2e-29
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 543 SQYDKDDIEEIGLIKFDFLGLTTLSI 568
SQY+K + ++ I FD+ G + I
Sbjct: 1043 SQYEKKLLNQVTKILFDYSGFAKVLI 1068
Score = 37 (18.1 bits), Expect = 1.1e-30, Sum P(3) = 1.1e-30
Identities = 11/47 (23%), Positives = 26/47 (55%)
Query: 464 LIPFKPGKLITLSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIR 510
L + + + L+ + E P LA+ ++++++V++ I V +IR
Sbjct: 915 LSSYPTAQYVKLAKEL-EIPSLAQAMRHKKKVQRAIVYITSVR-VIR 959
>TIGR_CMR|CJE_0818 [details] [associations]
symbol:CJE_0818 "DNA polymerase III, alpha subunit"
species:195099 "Campylobacter jejuni RM1221" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003141 InterPro:IPR004013
InterPro:IPR004805 InterPro:IPR011708 InterPro:IPR016195
Pfam:PF02811 Pfam:PF07733 SMART:SM00481 GO:GO:0005737 GO:GO:0003677
GO:GO:0006260 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0008408
GO:GO:0003887 eggNOG:COG0587 SUPFAM:SSF89550 TIGRFAMs:TIGR00594
HOGENOM:HOG000021784 KO:K02337 OMA:DFYLEIM ProtClustDB:PRK05673
RefSeq:YP_178822.1 ProteinModelPortal:Q5HV63 STRING:Q5HV63
GeneID:3230768 KEGG:cjr:CJE0818 PATRIC:20043381
BioCyc:CJEJ195099:GJC0-833-MONOMER Uniprot:Q5HV63
Length = 1200
Score = 1453 (516.5 bits), Expect = 7.9e-149, P = 7.9e-149
Identities = 356/922 (38%), Positives = 518/922 (56%)
Query: 150 DIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKT 209
+ A+ A + K+F D+FY EI R + I ++ +N+ I+AT+ + K
Sbjct: 161 EAAKEAALWYKKVFKDDFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKE 220
Query: 210 EFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCN 269
AHEV CIA G+ L++ R++ E K+ +M +LF DIP AI+NT EIA++CN
Sbjct: 221 RAAAHEVFMCIAMGKKLNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCN 280
Query: 270 LKLEFGKPKLPKFPTP----KNINI------------NDFLISKS--KHGLKKRLLNLYK 311
L+L G P P F K+ NI ND ++ + K GLK+RL +
Sbjct: 281 LELNLGNPTPPNFKFTREYAKDHNIILPEETKEFSFDNDDMVFEELCKKGLKERLK--FI 338
Query: 312 DPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSL 371
D K E+ YK+RL+ EI I M FSGY LIV DFI+ AK+ IPVGPGRGS A SL
Sbjct: 339 DES--KHEE--YKQRLEVEINIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSL 394
Query: 372 VAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQ 431
V+Y L ITD+DP+ Y+LLFERFLNP R+SMPD D+DFC + R VI YV D+YG D V+Q
Sbjct: 395 VSYCLRITDLDPIPYSLLFERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQ 454
Query: 432 IVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKN 491
++TFG + AKG IRDV RV D+ D ++KL+P + ITL A ++EP++ E I
Sbjct: 455 VITFGKLLAKGVIRDVARVCDMSIQDADELAKLVPEE--LKITLDAAYEKEPKIKEFIDR 512
Query: 492 EEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQE--GMTGIISQYDKDD 549
+ ++ E A+ +EG+ RN GMHA GV+I+ L PL++Q +++QY KD
Sbjct: 513 HPKGPEVWEYARALEGLNRNAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDH 572
Query: 550 IEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTVA 609
+E++ LIKFDFLGL TL++++ I IKK K + + +ND Y ++ NT+
Sbjct: 573 LEDVDLIKFDFLGLKTLTVINNAIKLIKKRYNK--DIIWETIDVNDSKVYKTIQSGNTLG 630
Query: 610 VFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR 666
+FQ+ES GM+++ KP+ FE+IIA+++LYRPGPM+ ++ +F RKHG + YP
Sbjct: 631 IFQIESGGMQSLNARLKPERFEDIIAVLALYRPGPMESGMLDDFIDRKHGLKNIEYPFDS 690
Query: 667 TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAI 726
+ VL TYG++VYQEQVMQI QI+GG+SLG AD++RRA+GKK +M + + F +GA
Sbjct: 691 LEKVLEPTYGVIVYQEQVMQIVQIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAE 750
Query: 727 KYGLSKHKANEIFNEIEKFAGYGFNKSHXXXXXXXXXXXXXXXXHYSSFFMAANLSLSMD 786
K G + KA +++ I KFAGYGFNKSH +Y S FMAA L+ +
Sbjct: 751 KQGYDRVKAEDLWELIVKFAGYGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEEN 810
Query: 787 DTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTI 846
+ +KI + + D +K + +LPP+IN + F +E DGK I YGLGAIK G +
Sbjct: 811 NVDKIAVYI-DEMKKMNIKLLPPSINKA-IREFSALEQDGKDAII-YGLGAIKSVGIPAV 867
Query: 847 EAIVTERKFGFFTNLFDFTKRIDKKYXXXXXXXXXXXXGAFDCFNEKRYMLVASID---- 902
E ++ R+ G F ++ DF +ID GAFD F R L +++
Sbjct: 868 ENLLEARQDGEFKDINDFLGKIDPTKINRRTLESLIKAGAFDEFGFTRKALFDNMENLSE 927
Query: 903 VALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYV-KVPSWSKKQELIEEKKVLGFCLSEH 961
+ K AE K + SLF ++ + + +N+ K + ++L EK++LG +S H
Sbjct: 928 ASRKMAEVRKNAAS--SLFGEEELTSGVQ-VNFTPKNEEFEVMEKLGYEKEILGIYVSGH 984
Query: 962 -IFCIYE--TEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKIL-IIVIDDNSNS 1017
+ YE I + LK G I + K + K I I D +S
Sbjct: 985 PLDRFYEQINAIDYVKSLEFEGLKNNGEILSIGKIEDFKSMMSKNNKRYGRIEILDYYSS 1044
Query: 1018 VEVIINNQLYEKNKNILKENEL 1039
+ + E+ +NI+K+ L
Sbjct: 1045 FDATVFESNVEEIENIIKDENL 1066
Score = 414 (150.8 bits), Expect = 7.2e-34, Sum P(2) = 7.2e-34
Identities = 103/294 (35%), Positives = 157/294 (53%)
Query: 4 QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
QF HL LH+EYS++DG ++ ++ ++A+TD N+FG I FY++ +G+KP
Sbjct: 3 QFTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKP 62
Query: 64 IIGCDVWITNEIE-NKKPSR----LLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIE 118
IIG + ++ N E + K SR L L KN GY L L S++YI+ + Y I +
Sbjct: 63 IIGMEAYLHNHDELDDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYY-YPRINKK 121
Query: 119 WLEKNKYQDGLIALSGAHLGDIG--IAVQNGRN--------DIAENFARRWSKIFPDNFY 168
LE Y +GLI S G++ + + RN + A+ A + K+F D+FY
Sbjct: 122 LLED--YSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKDDFY 179
Query: 169 IEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSN 228
EI R + I ++ +N+ I+AT+ + K AHEV CIA G+ L++
Sbjct: 180 FEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKKLND 239
Query: 229 TKRIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKF 282
R++ E K+ +M +LF DIP AI+NT EIA++CNL+L G P P F
Sbjct: 240 PDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNF 293
Score = 46 (21.3 bits), Expect = 7.2e-34, Sum P(2) = 7.2e-34
Identities = 41/167 (24%), Positives = 67/167 (40%)
Query: 490 KNEE-EVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKD 548
KNEE EV + + K++ GI V H I++ + EG+ +
Sbjct: 960 KNEEFEVMEKLGYEKEILGIY--VSGHPLDRFYEQINAIDYVKSLEFEGLK------NNG 1011
Query: 549 DIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTV 608
+I IG I+ DF + +S +K Y +I ++F N ++ N++K N
Sbjct: 1012 EILSIGKIE-DFKSM--MSKNNKR-YGRIEILDYYSSFDATVFESNVEEIENIIKDENLK 1067
Query: 609 AVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRK 655
G K E KP +F + I + G + IK F +K
Sbjct: 1068 NNAYGFVLGFKAEGGE-KPSFFLKAIKDLQSLEDGEIKAIKKFGTKK 1113
>UNIPROTKB|P63977 [details] [associations]
symbol:dnaE1 "DNA polymerase III subunit alpha"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] InterPro:IPR003141
InterPro:IPR004013 InterPro:IPR004365 InterPro:IPR004805
InterPro:IPR011708 InterPro:IPR016195 Pfam:PF01336 Pfam:PF02811
Pfam:PF07733 SMART:SM00481 GO:GO:0005886 GO:GO:0005737
GO:GO:0040007 GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 GO:GO:0006260 EMBL:BX842577
GO:GO:0008408 GO:GO:0003887 eggNOG:COG0587 SUPFAM:SSF89550
TIGRFAMs:TIGR00594 KO:K02337 OMA:DFYLEIM ProtClustDB:PRK05673
PIR:H70761 RefSeq:NP_216063.1 RefSeq:NP_336051.1
RefSeq:YP_006514935.1 ProteinModelPortal:P63977 SMR:P63977
PRIDE:P63977 EnsemblBacteria:EBMYCT00000000069
EnsemblBacteria:EBMYCT00000069336 GeneID:13316324 GeneID:886392
GeneID:924347 KEGG:mtc:MT1598 KEGG:mtu:Rv1547 KEGG:mtv:RVBD_1547
PATRIC:18125281 TubercuList:Rv1547 HOGENOM:HOG000021785
Uniprot:P63977
Length = 1184
Score = 1283 (456.7 bits), Expect = 8.1e-131, P = 8.1e-131
Identities = 325/1003 (32%), Positives = 530/1003 (52%)
Query: 5 FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
F+HL H+EYS++DG +I ++ PA+ +TD N+FG +FY SA GIKPI
Sbjct: 10 FVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIKPI 69
Query: 65 IGCDVWIT--NEIENKK-----PSRLLLLVKNNNGYLQLCELLSKAY-IENI----NYGR 112
IG + +I + + ++ PS+ V + Y L + A + N+ ++
Sbjct: 70 IGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSHAS 129
Query: 113 AEIRI-EWLEKN-----KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIF-PD 165
E ++ +W + ++ +G+I +G G++ ++ G++ A A +W +I PD
Sbjct: 130 FEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVGPD 189
Query: 166 NFYIEIQRFKQPNMNFQIQQ-FINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGE 224
N+++E+ + +++ + I +N+P +AT+ ++ + HE C+ G+
Sbjct: 190 NYFLELMDHGL-TIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTGK 248
Query: 225 ILSNTKRIKKFTKEQNFKTQSEMIKLFYD-IPSAIQNTIEIAKRCNLKLEFGKPK--LPK 281
LS+ R K K+ +EM +++ D +P A +T+ IA+R + P+ +P
Sbjct: 249 TLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRMPV 308
Query: 282 FPTPKNININDFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSG 341
FP P + +L + GL++R P+ Y++R +EI+ I F
Sbjct: 309 FPVPDGHDQASWLRHEVDAGLRRRFPA--GPPD-------GYRERAAYEIDVICSKGFPS 359
Query: 342 YFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISM 401
YFLIV+D I +A++ I VGPGRGS A SLVAY+L ITDIDP+ + LLFERFLNP R SM
Sbjct: 360 YFLIVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSM 419
Query: 402 PDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVL--DLRYSFCD 459
PD DIDF R +++Y D++G D V+Q++TFGT+ K A++D R+ ++ D
Sbjct: 420 PDIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIAD 479
Query: 460 SISKLIPFK-PGKLITLSNAI-------KEEPQLAERIKNEEEVRQLIELAKQVEGIIRN 511
I+K +P K I LS KE ++ I+ + +VR + + A+ +EG+IRN
Sbjct: 480 RITKALPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRN 539
Query: 512 VGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDK 571
G+HA V+++ L PL+K+ II+ +D E IGL+K DFLGL L+I+
Sbjct: 540 AGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGD 599
Query: 572 TIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFE 631
I ++ + + L +PL+DK TY LL + +T+ VFQL+ M+++L+ +P FE
Sbjct: 600 AIDNVRA--NRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFE 657
Query: 632 EIIALISLYRPGPMDLI--KNFCRRKHGEYFNYP-DPRT----KDVLSETYGIMVYQEQV 684
+++A+I+LYRPGPM + ++ RK+ P P +++L+ETYG++VYQEQ+
Sbjct: 658 DVVAVIALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQI 717
Query: 685 MQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEK 744
M+IAQ + YSL +AD+LR+A+GKKK + + + F +G G S +++ I
Sbjct: 718 MRIAQKVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILP 777
Query: 745 FAGYGFNKSHXXXXXXXXXXXXXXXXHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGL 804
FA Y FNKSH +Y + +MA L+ DD +K + + D K G+
Sbjct: 778 FADYAFNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKL-GI 836
Query: 805 SILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIV-TERKFGFFTNLFD 863
++LPP++N S F + G+ IRYGLGA++ G + + +++ T G FT+ D
Sbjct: 837 TVLPPDVNESGLNFASV----GQD--IRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSD 890
Query: 864 FTKRIDKKYXXXXXXXXXXXXGAFDCFNEKRYMLVASIDVALKNAEKTKKF--INQLSLF 921
+ +ID GAFD R L A+ + TKK + Q LF
Sbjct: 891 YLNKIDISACNKKVTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLF 950
Query: 922 -KNDDNNNLKEYLNYVKVPS--WSKKQELIEEKKVLGFCLSEH 961
NDD + + +KVP W K +L E+++LG +S H
Sbjct: 951 GSNDDGTGTADPVFTIKVPDDEWEDKHKLALEREMLGLYVSGH 993
>TIGR_CMR|CHY_0959 [details] [associations]
symbol:CHY_0959 "DNA polymerase III, alpha subunit"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR003141
InterPro:IPR004013 InterPro:IPR004805 InterPro:IPR011708
InterPro:IPR016195 Pfam:PF02811 Pfam:PF07733 SMART:SM00481
GO:GO:0005737 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006260 GO:GO:0008408 GO:GO:0003887 eggNOG:COG0587
SUPFAM:SSF89550 TIGRFAMs:TIGR00594 KO:K02337 HOGENOM:HOG000021785
RefSeq:YP_359806.1 ProteinModelPortal:Q3ADH8 STRING:Q3ADH8
GeneID:3727144 KEGG:chy:CHY_0959 PATRIC:21275051
BioCyc:CHYD246194:GJCN-958-MONOMER Uniprot:Q3ADH8
Length = 964
Score = 861 (308.1 bits), Expect = 3.0e-98, Sum P(3) = 3.0e-98
Identities = 202/584 (34%), Positives = 330/584 (56%)
Query: 324 KKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDP 383
K+RL +E+E I ++ +GYFLIV D ++++++ + +GPGRGS A SLV Y L +T++DP
Sbjct: 282 KERLNYELEIIKRLGLAGYFLIVHDLVRFSRSQDLALGPGRGSAAGSLVLYLLGVTEVDP 341
Query: 384 LSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGA 443
L + LLFERFLNP R +PD D+DF R++VI+Y+ +YG D V+ I T T AA+GA
Sbjct: 342 LKHGLLFERFLNPGRKVLPDVDLDFGHLDREKVIRYLFQKYGDDGVAHIGTVITFAARGA 401
Query: 444 IRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEVRQLIELAK 503
+R+V + L + I+ L+P G ++ A++ P++ + ++ + +R+L+ LA+
Sbjct: 402 VREVAKALGYPEPLLNKITPLLPAFGGS--SIEKAVRALPEVRKALE-DPVMRKLLTLAR 458
Query: 504 QVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQ-EGMTGIISQYDKDDIEEIGLIKFDFLG 562
EG R+ +HA G+++A + + PL G I+Q+DKDD+E +G +K D LG
Sbjct: 459 FFEGHPRHFSVHASGLVVARREDLEQIPLASSFRGEK--ITQFDKDDVERLGFLKVDLLG 516
Query: 563 LTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNML 622
L L+++ ++ ++ + +PLND +T+ ++KA T+ FQLES GM+ L
Sbjct: 517 LRLLTVVHRS--------RRSAS-----IPLNDGETWKRIQKAQTIGCFQLESDGMRYYL 563
Query: 623 KEAKPDYFEEIIALISLYRPGPMDL--IKNFCRRKHGEYFN-YPDPRTKDVLSETYGIMV 679
+ P EE+ +++L+RPGP++ + N+ KH + YP P K VL E++G+++
Sbjct: 564 GKVAPRNIEELAQVLALFRPGPLESGQVDNYLLAKHQKAPPVYPHPALKPVLEESHGLVL 623
Query: 680 YQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIF 739
YQEQV++IA ++ G+ L ++D LRRA+ K M E ++ F GA+K G S A +IF
Sbjct: 624 YQEQVLKIAALVAGFDLAKSDDLRRAMSKHDRKIMAELKEEFMMGAVKNGYSAADAEKIF 683
Query: 740 NEIEKFAGYGFNKSHXXXXXXXXXXXXXXXXHYSSFFMAANLSLSMDDTNKIKILVKDAI 799
+ ++ FAGYGFNK+H H+ + L+ S +++A
Sbjct: 684 SLLQNFAGYGFNKAHGVSYAYLAYYSTFLITHWPKTYFTLLLN-SDGGFYPPSFYLREAG 742
Query: 800 KTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERKFGFFT 859
+ G+ IL P+IN S+Y F + DG IR G I+G G +I+ E + +T
Sbjct: 743 RR-GIKILLPDINESQYGFTEV--KDG----IRIGFKDIEGVGPKAA-SIILEGRTRPYT 794
Query: 860 NLFDFTKRIDKKYXXXXXXXXXXXXGAFDCFNEKRYMLVASIDV 903
+ +DF +R K GAFD F R L+ ++V
Sbjct: 795 SFWDFWQRAGHKLSVETIRNLILA-GAFDGFGVSRESLLYCLEV 837
Score = 532 (192.3 bits), Expect = 1.8e-53, Sum P(3) = 1.8e-53
Identities = 134/437 (30%), Positives = 237/437 (54%)
Query: 141 GIAVQNGRNDIAENFAR--RWSKIFPDNFYIEIQRFKQPNMNFQ-IQQFINIASNINLPI 197
G+ + G +A + + F D+FY+ + + N + I+ + IA L I
Sbjct: 111 GLIILGGAEFLAAGLKNVLNFKEAFGDDFYL-LAKVDDLLTNPENIRALLAIAKKYRLKI 169
Query: 198 VATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK-TQSEMIKLFYDIPS 256
+ +FL+K + + + C + + + +IKK T + + +EM K+F I
Sbjct: 170 AGSPNPRFLEKNHYFFYRL-LCAMKNNVTLD--QIKKRTSPYAYYLSPNEMAKIFAPINH 226
Query: 257 AIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEIY 316
+++ T+EIA++ KLP+F P + ++L G R + ++
Sbjct: 227 SLKTTLEIAEKVGDFFPGDDLKLPEFTCPGEKD--EYLRKLCLEGAYARYGRISRE---- 280
Query: 317 KCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSL 376
K+RL +E+E I ++ +GYFLIV D ++++++ + +GPGRGS A SLV Y L
Sbjct: 281 ------VKERLNYELEIIKRLGLAGYFLIVHDLVRFSRSQDLALGPGRGSAAGSLVLYLL 334
Query: 377 SITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFG 436
+T++DPL + LLFERFLNP R +PD D+DF R++VI+Y+ +YG D V+ I T
Sbjct: 335 GVTEVDPLKHGLLFERFLNPGRKVLPDVDLDFGHLDREKVIRYLFQKYGDDGVAHIGTVI 394
Query: 437 TMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEVR 496
T AA+GA+R+V + L + I+ L+P G ++ A++ P++ + ++ + +R
Sbjct: 395 TFAARGAVREVAKALGYPEPLLNKITPLLPAFGGS--SIEKAVRALPEVRKALE-DPVMR 451
Query: 497 QLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQ-EGMTGIISQYDKDDIEEIGL 555
+L+ LA+ EG R+ +HA G+++A + + PL G I+Q+DKDD+E +G
Sbjct: 452 KLLTLARFFEGHPRHFSVHASGLVVARREDLEQIPLASSFRGEK--ITQFDKDDVERLGF 509
Query: 556 IKFDFLGLTTLSILDKT 572
+K D LGL L+++ ++
Sbjct: 510 LKVDLLGLRLLTVVHRS 526
Score = 104 (41.7 bits), Expect = 3.0e-98, Sum P(3) = 3.0e-98
Identities = 40/153 (26%), Positives = 70/153 (45%)
Query: 4 QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
+++ L + + YS ++ ++++ ++E A A+ I D +NLFG K + +A N +K
Sbjct: 3 EYVPLNIKTGYSFLESSIKLDGLMEKTARLGLKAVGIAD-TNLFGAAKAFFAAKNFNLKL 61
Query: 64 IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKN 123
++G +V + L L ++N GY L ++ Y AEI LE
Sbjct: 62 LLGLEV-------KSEAGPLWLYARDNEGYKFLVRAATQKYFGKEVLSLAEI----LEAR 110
Query: 124 KYQDGLIALSGAHLGDIGIA-VQNGRNDIAENF 155
GLI L GA G+ V N + ++F
Sbjct: 111 ----GLIILGGAEFLAAGLKNVLNFKEAFGDDF 139
Score = 44 (20.5 bits), Expect = 3.0e-98, Sum P(3) = 3.0e-98
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 1035 KENELLIVSGKVLEDR---------FLKNIRINAEKIFDINVARILYGKKF 1076
K E LI++G+V R FL N ++ +++ V LYGK F
Sbjct: 886 KTGEGLIITGEVTFGRRRYTRKGEPFLTLTLENRQEFYEVLVPASLYGKSF 936
>UNIPROTKB|O50399 [details] [associations]
symbol:dnaE2 "Error-prone DNA polymerase" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0042276 "error-prone translesion
synthesis" evidence=IDA] [GO:0046677 "response to antibiotic"
evidence=IEP] HAMAP:MF_01902 InterPro:IPR003141 InterPro:IPR004013
InterPro:IPR004365 InterPro:IPR004805 InterPro:IPR011708
InterPro:IPR016195 InterPro:IPR023073 Pfam:PF01336 Pfam:PF02811
Pfam:PF07733 SMART:SM00481 GO:GO:0005886 GO:GO:0005737
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 GO:GO:0006260 GO:GO:0046677
EMBL:BX842582 GO:GO:0008408 GO:GO:0003887 PIR:A70972
RefSeq:NP_217887.2 RefSeq:NP_338003.2 RefSeq:YP_006516852.1
ProteinModelPortal:O50399 SMR:O50399
EnsemblBacteria:EBMYCT00000000506 EnsemblBacteria:EBMYCT00000071896
GeneID:13318199 GeneID:887259 GeneID:926513 KEGG:mtc:MT3480
KEGG:mtu:Rv3370c KEGG:mtv:RVBD_3370c PATRIC:18129394
TubercuList:Rv3370c eggNOG:COG0587 HOGENOM:HOG000021783 KO:K14162
OMA:VTLEDEH ProtClustDB:PRK05672 GO:GO:0042276 SUPFAM:SSF89550
TIGRFAMs:TIGR00594 Uniprot:O50399
Length = 1098
Score = 731 (262.4 bits), Expect = 9.6e-71, Sum P(2) = 9.6e-71
Identities = 185/581 (31%), Positives = 297/581 (51%)
Query: 322 RYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDI 381
R +++ E++ I ++ F GYFL+V D ++ ++N I + GRGS A+S V Y+L +T +
Sbjct: 378 RAYSQIEHELKVIAQLRFPGYFLVVHDITRFCRDNDI-LCQGRGSAANSAVCYALGVTAV 436
Query: 382 DPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAK 441
DP++ LLFERFL+P R PD DID + R++VIQYV +YG+D +Q+ T +
Sbjct: 437 DPVANELLFERFLSPARDGPPDIDIDIESDQREKVIQYVYHKYGRDYAAQVANVITYRGR 496
Query: 442 GAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEVRQLIEL 501
A+RD+ R L F PG+ S + A+ + E Q+I+L
Sbjct: 497 SAVRDMARALG--------------FSPGQQDAWSKQVSHWTGQADDVDGIPE--QVIDL 540
Query: 502 AKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFL 561
A Q+ + R++G+H+GG++I + + CP+ + Q+DKDD IGL+KFD L
Sbjct: 541 ATQIRNLPRHLGIHSGGMVICDRPIADVCPVEWARMANRSVLQWDKDDCAAIGLVKFDLL 600
Query: 562 GLTTLSILDKTIYFIKKI--NTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMK 619
GL LS L ++ K + K L +L L++ Y +L +A++V VFQ+ES+
Sbjct: 601 GLGMLSAL----HYAKDLVAEHKGIEVDLARLDLSEPAVYEMLARADSVGVFQVESRAQM 656
Query: 620 NMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPRTKDVLSETYG 676
L KP F +++ ++L RPGP+ + + RR++G + Y P L +T G
Sbjct: 657 ATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHPYIRRRNGVDPVIYEHPSMAPALRKTLG 716
Query: 677 IMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRK--FFQNGAIKYGLSKHK 734
+ ++QEQ+MQ+A G+S +AD LRRA+G K+++E + + F+ +G
Sbjct: 717 VPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSKRSTERMRRLRGRFYDGMRALHGAPDEV 776
Query: 735 ANEIFNEIEKFAGYGFNKSHXXXXXXXXXXXXXXXXHYSSFFMAANLSLSMDDTNKIKIL 794
+ I+ ++E FA +GF +SH H+ + F AA L + L
Sbjct: 777 IDRIYEKLEAFANFGFPESHALSFASLVFYSAWFKLHHPAAFCAALLRAQPMGFYSPQSL 836
Query: 795 VKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERK 854
V DA + G+++ P +N S + E+ G ++R GLGA++ G E +V ER
Sbjct: 837 VADA-RRHGVAVHGPCVNASLAH--ATCENAGT--EVRLGLGAVRYLGAELAEKLVAERT 891
Query: 855 F-GFFTNLFDFTKRIDKKYXXXXXXXXXXXXGAFDCFNEKR 894
G FT+L D T R+ GA CF R
Sbjct: 892 ANGPFTSLPDLTSRVQ---LSVPQVEALATAGALGCFGMSR 929
Score = 579 (208.9 bits), Expect = 5.4e-53, Sum P(2) = 5.4e-53
Identities = 163/570 (28%), Positives = 266/570 (46%)
Query: 5 FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
+ L HS YS +DG +++E AA ALA+TD L+G ++F ++A ++ +
Sbjct: 65 YAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAAAELDVRTV 124
Query: 65 IGCDVWITNEIENKKPS----RLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
G ++ + ++P LL+L + GY +L L+ A++ G+ + L
Sbjct: 125 FGAELSLGATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEKGKPRYDFDAL 184
Query: 121 EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAEN-FARRWSKIFPDNFYIEIQRFKQPNM 179
+ I L+G G + A+ G A+ A + P IE+ P
Sbjct: 185 TEAAGGHWHI-LTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSRVSIELTHHGHPLD 243
Query: 180 NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
+ + +A + IVAT F + I L +
Sbjct: 244 DERNAALAGLAPRFGVGIVATTGAHFADPSRGRLAMAMAAIRARRSLDSAAGWLAPLGGA 303
Query: 240 NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
+ ++ EM +LF P A+ E+ +RC L+ P+LP F P + +L S
Sbjct: 304 HLRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPDGHTEDSWLRSLVM 363
Query: 300 HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
G ++R Y P K Y + ++ E++ I ++ F GYFL+V D ++ ++N I
Sbjct: 364 AGARER----YGPP---KSAPRAYSQ-IEHELKVIAQLRFPGYFLVVHDITRFCRDNDI- 414
Query: 360 VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
+ GRGS A+S V Y+L +T +DP++ LLFERFL+P R PD DID + R++VIQY
Sbjct: 415 LCQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDIDIESDQREKVIQY 474
Query: 420 VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
V +YG+D +Q+ T + A+RD+ R L F PG+ S +
Sbjct: 475 VYHKYGRDYAAQVANVITYRGRSAVRDMARALG--------------FSPGQQDAWSKQV 520
Query: 480 KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
A+ + E Q+I+LA Q+ + R++G+H+GG++I + + CP+
Sbjct: 521 SHWTGQADDVDGIPE--QVIDLATQIRNLPRHLGIHSGGMVICDRPIADVCPVEWARMAN 578
Query: 540 GIISQYDKDDIEEIGLIKFDFLGLTTLSIL 569
+ Q+DKDD IGL+KFD LGL LS L
Sbjct: 579 RSVLQWDKDDCAAIGLVKFDLLGLGMLSAL 608
Score = 53 (23.7 bits), Expect = 9.6e-71, Sum P(2) = 9.6e-71
Identities = 11/58 (18%), Positives = 30/58 (51%)
Query: 989 VSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKV 1046
++G +T + T +G + I ++D + V V+ ++ +++ + L++ G+V
Sbjct: 1013 IAGAVTHRQRPATAQG-VTFINLEDETGMVNVLCTPGVWARHRKLAHTAPALLIRGQV 1069
>TIGR_CMR|SPO_0670 [details] [associations]
symbol:SPO_0670 "DNA polymerase III, alpha subunit,
putative" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] HAMAP:MF_01902 InterPro:IPR003141
InterPro:IPR004013 InterPro:IPR004365 InterPro:IPR004805
InterPro:IPR011708 InterPro:IPR016195 InterPro:IPR023073
Pfam:PF01336 Pfam:PF02811 Pfam:PF07733 SMART:SM00481 GO:GO:0005737
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 Gene3D:2.40.50.140 InterPro:IPR012340 GO:GO:0008408
GO:GO:0003887 eggNOG:COG0587 HOGENOM:HOG000021783 KO:K14162
SUPFAM:SSF89550 TIGRFAMs:TIGR00594 RefSeq:YP_165925.1
ProteinModelPortal:Q5LVN0 GeneID:3195523 KEGG:sil:SPO0670
PATRIC:23374607 OMA:SARRHEV ProtClustDB:CLSK933325 Uniprot:Q5LVN0
Length = 1101
Score = 679 (244.1 bits), Expect = 1.2e-66, Sum P(2) = 1.2e-66
Identities = 231/881 (26%), Positives = 406/881 (46%)
Query: 5 FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFY------KSAYN 58
+ L + + ++ + G ++I AA A+AITD ++L G+++ Y + +
Sbjct: 3 YAELCVTTNFTFLTGASHPEEMITRAAELGLHAIAITDRNSLAGVVRAYAALKELRREAD 62
Query: 59 KGIK-----PIIGC---DVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENIN 109
+ I+ I C +V I + RL L+ L+ L A +
Sbjct: 63 EAIRIRSQHRIDSCSRQEVGHPQPIARPEAPRLPRLITGCRLVLRDSPLHWIALPRDRAA 122
Query: 110 YGRAEIRIEWLEKNKYQDGLIALSGAHL-----GDIGIAVQNGRNDIAENFARRWSKIFP 164
Y R R+ L K + + G L A L G I IA+ GR D A ++ + FP
Sbjct: 123 YQRLT-RLLTLGKRRAEKGDCHLDLADLLAGCTGMILIALPQGRLDGALPHLQQVQRRFP 181
Query: 165 DNFYI-EIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEG 223
+ ++ R+ + + + +A + P+VA + +V TC+ E
Sbjct: 182 GHVFLGAAPRYDGSDQAW-LAACARLALRSSAPMVAVGDALMHRANRRQLADVLTCMREH 240
Query: 224 EILSNTKRIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFP 283
+ E+ K ++M +LF D P+A++ T++IA RC+ L +L +
Sbjct: 241 ITIDRIGTRALPNAERRLKGHADMARLFRDHPAALRRTLDIAARCSFCLS----EL-SYE 295
Query: 284 TPKNININDFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYF 343
P + + ++ + + ++ Y + +L K E++ + ++ F YF
Sbjct: 296 YPDEVAEGETPQARLERLTAEGIVRRYPGGAPQRVHELVAK-----ELKLVAELGFPAYF 350
Query: 344 LIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPD 403
L V D +Q+A++ I + GRGS A+S++ Y L ITD+ P ++FERF++ R PD
Sbjct: 351 LTVHDIVQFARSQGI-LCQGRGSAANSILCYLLGITDVSPDQIAMVFERFISKYRGEPPD 409
Query: 404 FDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISK 463
D+DF E R+ VIQ++ RYG+ T ++ AIR+VG+V+ L S+S
Sbjct: 410 IDVDFEHERREEVIQWIYQRYGRHRAGLCATVIHFRSRAAIREVGKVMGLSQDVTASLS- 468
Query: 464 LIPFKPGKLITLSNAIKEEPQLAERIKNEEEVRQL---IELAKQVEGIIRNVGMHAGGVL 520
G++ SN +P+ + + E R+L I L ++ G R++ H GG +
Sbjct: 469 ------GQIWGQSNG-GADPERMRELGLDPEDRRLALTIRLIGEIIGFPRHLSQHVGGFV 521
Query: 521 IAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKIN 580
I +L P+ + ++DKDDI+ +G++K D LGL L+ + K +++
Sbjct: 522 ITRGRLDELAPIENAAMEDRTLIEWDKDDIDTLGILKVDVLGLGMLTCIRKAFDLMREHE 581
Query: 581 TKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLY 640
+ + S++ +P D TY++L A+ V VFQ+ES+ N L +P F +++ +++
Sbjct: 582 QR--HLSIDTVPQEDAATYDMLCAADAVGVFQVESRAQMNFLPRMRPRTFYDLVIEVAIV 639
Query: 641 RPGPMD--LIKNFCRRKHGEYFNYP-DPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLG 697
RPGP+ +++ + RR+ G P P V + T G+ ++QEQ +QIA + GY+
Sbjct: 640 RPGPIQGGMVQPYIRRRQGLEKAEPFGPELAAVTARTLGVPLFQEQALQIAVVGAGYTAE 699
Query: 698 QADLLRRAIGK-KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHXX 756
+AD LRR++ ++ + HR F G + G S+ A F +IE FA YGF +SH
Sbjct: 700 EADHLRRSLASFRRMGTIGAHRDTFIAGMRRNGYSQEVAERCFGQIEGFADYGFPESHAA 759
Query: 757 XXXXXXXXXXXXXXHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKY 816
H+ + F A L+ +V+DA + + + P +N S +
Sbjct: 760 AFAMLAYVSAWLKCHHPAIFACALLNAQPMGFYAPAQIVRDA-RDHQVELRPICVNASDW 818
Query: 817 YFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERKFGF 857
+DG +R G IKG + IV R G+
Sbjct: 819 DNRLERRADGA-LALRLGFRQIKGFREEDAAWIVAARGNGY 858
Score = 74 (31.1 bits), Expect = 1.2e-66, Sum P(2) = 1.2e-66
Identities = 24/131 (18%), Positives = 60/131 (45%)
Query: 936 VKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITE 995
V +P+ +E++E+ + L H + I P + +V G++
Sbjct: 924 VTLPAMHLGEEVVEDYVSMRLTLRAHPMELLRPAIPGLTPHDKLASVAAHRVSVCGLVIT 983
Query: 996 LKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNI 1055
+ T G ++ + ++D + V++ ++YE+ + I+ LL V+G + + + +
Sbjct: 984 RQRPGTASG-VIFLTLEDETGVSNVVVWPKIYEQFRRIVMGGRLLRVTGTLQREGIV--V 1040
Query: 1056 RINAEKIFDIN 1066
+ A++I D++
Sbjct: 1041 HLIAQRIEDLS 1051
>TIGR_CMR|CHY_1772 [details] [associations]
symbol:CHY_1772 "DNA polymerase III, alpha subunit,
Gram-positive type" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0009360 "DNA polymerase III complex" evidence=ISS]
InterPro:IPR003141 InterPro:IPR004013 InterPro:IPR004365
InterPro:IPR006054 InterPro:IPR006055 InterPro:IPR006308
InterPro:IPR011708 InterPro:IPR012337 Pfam:PF01336 Pfam:PF02811
Pfam:PF07733 SMART:SM00479 SMART:SM00481 Pfam:PF00929 GO:GO:0005737
GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006261
GO:GO:0090305 InterPro:IPR013520 SUPFAM:SSF53098 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0008408 GO:GO:0003887
TIGRFAMs:TIGR00573 eggNOG:COG2176 KO:K03763 OMA:IYGMEAN
HAMAP:MF_00356 TIGRFAMs:TIGR01405 RefSeq:YP_360592.1
ProteinModelPortal:Q3AB92 STRING:Q3AB92 GeneID:3727188
KEGG:chy:CHY_1772 PATRIC:21276655 HOGENOM:HOG000058064
BioCyc:CHYD246194:GJCN-1771-MONOMER InterPro:IPR024754 Pfam:PF11490
Uniprot:Q3AB92
Length = 1407
Score = 234 (87.4 bits), Expect = 5.8e-15, Sum P(4) = 5.8e-15
Identities = 151/658 (22%), Positives = 285/658 (43%)
Query: 20 LLRINDVIEAAANDYQPALAIT-DLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIENK 78
L I + +E + N++ ALA + L+ +F +K + +G+ + N I ++
Sbjct: 522 LKTITEHLEVSLNNHHRALADSYALAEVF--LKLLPRLFERGLYSLDDLAKINYNYINDR 579
Query: 79 -KPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHL 137
K + +LVKN G L L++ + ++ Y RI E +Y++GL+ +
Sbjct: 580 SKTYHVSILVKNQEGLYNLYRLIT---LSHLKYFHRHPRIPKSELMRYREGLLIGTACEA 636
Query: 138 GDIGIAV-QNGRNDIAENFARRWS--KIFP--DN-FYIEIQRFKQPNMNFQI-QQFINIA 190
G++ A+ +N AR + +I P +N F + QR K ++ ++ I +
Sbjct: 637 GELFTALLENQPESRILEIARFYDYFEIMPKGNNAFLLRNQRLKSEQELEELNRKIIALG 696
Query: 191 SNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKL 250
+N P+VAT + FL+ + + R + +G+ + + KT EM+K
Sbjct: 697 EKLNKPVVATGDVHFLEPEDEI---YRRILQKGQGYDDAE----LQPPIYLKTTEEMLKE 749
Query: 251 FYDI--PSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLN 308
F + A + ++ ++ ++E KP +P P I D I + + +R
Sbjct: 750 FAYLGQEKAYEVVVDNPRKIAEQIEEIKP-IPDEFYPPIIEGADRQIYEMTY---QRAHE 805
Query: 309 LYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGA 368
LY DP ++ +KRL+ E++ II F+ +LI ++ + ++ VG RGS
Sbjct: 806 LYGDP----LPEI-VEKRLKRELDAIINNGFAVLYLIAHKLVKKSLDDGYLVG-SRGSVG 859
Query: 369 SSLVAYSLSITDIDPLS--Y---NLLFERFLNPNRIS----MPDFDIDFCPEGRDRVIQY 419
SSLVA IT+++PL Y N + F+ MPD + CP R
Sbjct: 860 SSLVATMTMITEVNPLPPHYLCPNCRYSEFITDGSYGCGADMPDKN---CP----RCGTL 912
Query: 420 VKDRYGKDAVSQIVTFGTMAAKG-AIRDV-----GRVLDLRYSFCDSI-SKLIPFKPGKL 472
+K + G D + TF M +G + D+ G + + + + K F+ G +
Sbjct: 913 LK-KEGHDIPFE--TF--MGFEGDKVPDIDLNFSGEYQPRAHKYTEELFGKDYVFRAGTI 967
Query: 473 ITLSN--AIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSK--LIN 528
T+++ A + E + L + G+ R G H GG+++ P +
Sbjct: 968 ATVADKTAFGFVKKYFEETGRPARQAWINWLTNGIVGVKRTTGQHPGGLMVVPKNNDVHR 1027
Query: 529 FCPL-YKQEGMT-GIIS-QYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN 585
F PL Y + + G+++ +D I L+K D LG ++L K + + I+ +T
Sbjct: 1028 FTPLQYPADDKSAGVVTTHFDYHSISS-RLVKLDILGHDDPTVL-KMLEDLTGIDPRTIR 1085
Query: 586 FSLNK-LPL-NDKDTYNLLKKA--NTVAVFQLESQG---MKNMLKEAKPDYFEEIIAL 636
K L + + + + + TV + + G ++ ML++ +P F E++ +
Sbjct: 1086 LDDRKTLGIFSSTEPLGVTPEQIRTTVGTYGIPEFGTRFVRQMLEDTRPKSFTELVRI 1143
Score = 62 (26.9 bits), Expect = 5.8e-15, Sum P(4) = 5.8e-15
Identities = 17/69 (24%), Positives = 35/69 (50%)
Query: 6 IHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPII 65
I L LHS+ S +D ++ + + + + A+AITD + + + + GIK I
Sbjct: 308 IELHLHSKMSAMDSVVDLEKLFQTLKSWGHEAVAITDHGVVQAFPEAAELSAKYGIKVIY 367
Query: 66 GCDVWITNE 74
G + ++ ++
Sbjct: 368 GLEGYLVDD 376
Score = 45 (20.9 bits), Expect = 5.8e-15, Sum P(4) = 5.8e-15
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 803 GLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLF 862
G+ +LP ++ S F +I +G I A+ G G++ IV R+ G F ++
Sbjct: 1318 GIKMLPVDLEKSDATRF-LITPEG----ILPPFVALPGIGEAAAINIVKAREEGMFVSIE 1372
Query: 863 DFTKR 867
D R
Sbjct: 1373 DLKTR 1377
Score = 40 (19.1 bits), Expect = 5.8e-15, Sum P(4) = 5.8e-15
Identities = 20/90 (22%), Positives = 35/90 (38%)
Query: 701 LLRRAIGKKKTSEMIEH-RKFFQNGAIKYGLSK-HKANEIF-NEIEKFAGYGFNKSHXXX 757
LL++ + KK +++E+ RK + + K H + F +K Y F K+H
Sbjct: 1182 LLQKGVPPKKAFKIMENVRKGKGISEEEIAVMKEHGVPDWFIGSCQKIK-YLFPKAHAVA 1240
Query: 758 XXXXXXXXXXXXXHYSSFFMAANLSLSMDD 787
+Y F A ++ DD
Sbjct: 1241 YVMMAFRIAYFKVYYPEAFYATYFTVRADD 1270
>TIGR_CMR|BA_3955 [details] [associations]
symbol:BA_3955 "DNA polymerase III, alpha subunit,
Gram-positive type" species:198094 "Bacillus anthracis str. Ames"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR003141
InterPro:IPR004013 InterPro:IPR004365 InterPro:IPR006054
InterPro:IPR006055 InterPro:IPR006308 InterPro:IPR011708
InterPro:IPR012337 Pfam:PF01336 Pfam:PF02811 Pfam:PF07733
SMART:SM00479 SMART:SM00481 Pfam:PF00929 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006261 GO:GO:0090305 InterPro:IPR013520 SUPFAM:SSF53098
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0008408
GO:GO:0003887 TIGRFAMs:TIGR00573 KO:K03763 OMA:IYGMEAN
ProtClustDB:PRK00448 HAMAP:MF_00356 TIGRFAMs:TIGR01405
HOGENOM:HOG000058064 InterPro:IPR024754 Pfam:PF11490
RefSeq:NP_846198.1 RefSeq:YP_020594.1 RefSeq:YP_029920.1
HSSP:P03007 ProteinModelPortal:Q81WL8 IntAct:Q81WL8
EnsemblBacteria:EBBACT00000010872 EnsemblBacteria:EBBACT00000014310
EnsemblBacteria:EBBACT00000022295 GeneID:1087547 GeneID:2820091
GeneID:2852033 KEGG:ban:BA_3955 KEGG:bar:GBAA_3955 KEGG:bat:BAS3669
BioCyc:BANT260799:GJAJ-3727-MONOMER
BioCyc:BANT261594:GJ7F-3843-MONOMER Uniprot:Q81WL8
Length = 1433
Score = 197 (74.4 bits), Expect = 7.4e-12, Sum P(4) = 7.4e-12
Identities = 130/633 (20%), Positives = 265/633 (41%)
Query: 49 IIKFYKSAYNKGIK--PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIE 106
++K K KG + + + + + +PS + LL ++ G L +L+S +++
Sbjct: 574 LVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL- 632
Query: 107 NINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWS--KIFP 164
NY R+ KY++G++ + G++ A+ + E A+ + ++ P
Sbjct: 633 --NYFYRVPRVPRSLLKKYREGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMP 690
Query: 165 DNFY---IEIQRFK-QPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCI 220
+E + + + + I + + ++ P+VAT + +L + + ++
Sbjct: 691 PEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSS 750
Query: 221 AEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGK--PK 278
G N + +F+T EM++ F + + I + + G P
Sbjct: 751 QGGANPLNRHSLPPV----HFRTTDEMLECFSFLGEDVAKEIVVTNTQKIASLIGDVHPV 806
Query: 279 LPKFPTPKNININDFLISKSKHGLKKRLLNLYKD--PEIYKCEKLRYKKRLQFEIETIIK 336
TPK +D +++ K ++Y + PEI + RL+ E+++II
Sbjct: 807 KDDLYTPKIEGADD----ETRDMSYKMARSIYGEELPEIVEA-------RLEKELKSIIG 855
Query: 337 MNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFER---- 392
F+ +LI ++ + + VG RGS SS VA + IT+++PL + + +
Sbjct: 856 HGFAVIYLISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQS 914
Query: 393 -FLNPNRISMPDFDIDF--CPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKG-AIRDVG 448
F N + FD+ CP I YVKD G D + TF + KG + D+
Sbjct: 915 EFFNDGSVGS-GFDLPDKECPTCN---IPYVKD--GHDIPFE--TF--LGFKGDKVPDID 964
Query: 449 RVLDLRYS-FCDSISKLI-----PFKPGKLITLSNAIKEEPQLAERIKNEEE--VR--QL 498
Y + +K++ ++ G + T++ K + N+ +R ++
Sbjct: 965 LNFSGEYQPRAHNYTKVLFGEDYVYRAGTIGTVAE--KTAYGYVKGYANDHNLTIRNAEI 1022
Query: 499 IELAKQVEGIIRNVGMHAGGVLIAPS--KLINFCPL-YKQE--GMTGIISQYDKDDIEEI 553
L G+ R G H GG+++ P + +F P+ Y + G + +D I +
Sbjct: 1023 DRLVAGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSIGAEWRTTHFDFHSIHD- 1081
Query: 554 GLIKFDFLGLTTLSILDKTIYFIKKINTKTT---NFSLNKL---PLNDKDTYNLLK-KAN 606
L+K D LG +++ + + + I+ KT + + K+ P + T + K
Sbjct: 1082 NLLKLDILGHDDPTVI-RMLQDLSGIDPKTIPTDDPEVMKIFSGPESLGVTEEQINCKTG 1140
Query: 607 TVAVFQLESQGMKNMLKEAKPDYFEEIIALISL 639
T+ + + ++ ++ ML+E KP F E++ + L
Sbjct: 1141 TLGIPEFGTKFVRQMLEETKPTTFSELVQISGL 1173
Score = 69 (29.3 bits), Expect = 7.4e-12, Sum P(4) = 7.4e-12
Identities = 16/69 (23%), Positives = 33/69 (47%)
Query: 6 IHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPII 65
+ L LH+ S +D + ++ ++ A A+A+TD + + Y + G+K I
Sbjct: 332 VELHLHTPMSQMDAVTPVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391
Query: 66 GCDVWITNE 74
G + + N+
Sbjct: 392 GVEANLVND 400
Score = 44 (20.5 bits), Expect = 7.4e-12, Sum P(4) = 7.4e-12
Identities = 10/40 (25%), Positives = 15/40 (37%)
Query: 748 YGFNKSHXXXXXXXXXXXXXXXXHYSSFFMAANLSLSMDD 787
Y F K+H H++ F AA ++ DD
Sbjct: 1258 YMFPKAHAAAYVLMAVRIAYFKVHFALLFYAAYFTVRADD 1297
Score = 42 (19.8 bits), Expect = 7.4e-12, Sum P(4) = 7.4e-12
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 837 AIKGTGKSTIEAIVTERKFGFFTNLFDFTKR 867
A+ G G + +IV RK G F + D +R
Sbjct: 1374 AVPGLGTNAALSIVEARKNGEFLSKEDLQQR 1404
Score = 42 (19.8 bits), Expect = 3.4e-09, Sum P(4) = 3.4e-09
Identities = 12/51 (23%), Positives = 24/51 (47%)
Query: 3 PQFIHLRLH-SEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKF 52
P F +L+ + + + L+ +N+ +E+ A A + D FG +F
Sbjct: 109 PMFAYLKKQLPQVNGVKLLINVNNELESTALKKNVAKPVGDQYEAFGFPRF 159
Score = 37 (18.1 bits), Expect = 1.7e-11, Sum P(3) = 1.7e-11
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 654 RKHGEYFNYPDPRTKDVLSET 674
RK+GE+ + D + + +S+T
Sbjct: 1390 RKNGEFLSKEDLQQRSKVSKT 1410
>UNIPROTKB|P75080 [details] [associations]
symbol:polC "DNA polymerase III PolC-type" species:272634
"Mycoplasma pneumoniae M129" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003141 InterPro:IPR004013
InterPro:IPR006054 InterPro:IPR006055 InterPro:IPR006308
InterPro:IPR011708 InterPro:IPR012337 Pfam:PF02811 Pfam:PF07733
SMART:SM00479 SMART:SM00481 Pfam:PF00929 GO:GO:0005737
GO:GO:0003677 GO:GO:0006260 GO:GO:0090305 InterPro:IPR013520
SUPFAM:SSF53098 GO:GO:0008408 EMBL:U00089 GenomeReviews:U00089_GR
GO:GO:0003887 TIGRFAMs:TIGR00573 PIR:S73446 RefSeq:NP_109722.1
ProteinModelPortal:P75080 IntAct:P75080 PaxDb:P75080 GeneID:877158
KEGG:mpn:MPN034 PATRIC:20021343 eggNOG:COG2176 KO:K03763
OMA:IYGMEAN ProtClustDB:PRK00448 BioCyc:MPNE272634:GJ6Z-36-MONOMER
HAMAP:MF_00356 TIGRFAMs:TIGR01405 Uniprot:P75080
Length = 1443
Score = 131 (51.2 bits), Expect = 5.9e-06, Sum P(3) = 5.9e-06
Identities = 120/516 (23%), Positives = 207/516 (40%)
Query: 84 LLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDI-GI 142
++ +K+ +G+ +L ELLS A +N N R + L+K + + GDI
Sbjct: 607 IIYIKSQSGFAKLYELLSIALTDN-NATRPLVLTSTLQK--FAKSFVITDNPVQGDIFKA 663
Query: 143 AVQNGRNDIAENFAR-RWSKIFPDNFYIEI---QRFKQPNMNFQIQQFINIASNINLPIV 198
A+ ++ R + I P Y + K+ + I+ ++ A +N +
Sbjct: 664 ALTKPLKELEAAIKRVDFVLIAPPGAYAGYTIREGLKKEAIPNAIKLVVDTAQRLNKLVA 723
Query: 199 ATHPIQFLKKTEFLAHEVRTCIAEG-----EILSNTKRIKKFTKEQNFKTQSEMI----- 248
F+ E ++ C A+G N K ++ +T EM+
Sbjct: 724 VASDAYFIHPWENEYYKAIVC-AKGLGGRWHRHFNYKEREQRVPNVFVRTTGEMLNEMSF 782
Query: 249 ---KLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKR 305
+L Y++ ++NT ++AK+ L + P K P N+ L +K+ K
Sbjct: 783 LGEQLAYEL--VVENTNKLAKQ--LTADDLVPVQTKLQPPVIEGSNENLAAKTWSQAKA- 837
Query: 306 LLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRG 365
+Y DP KL ++R+Q E++ II F + I ++ + + VGP RG
Sbjct: 838 ---IYGDP----LPKL-IEQRIQEELKAIIDNGFGIIYWISHLLVKQSVQDGYFVGP-RG 888
Query: 366 SGASSLVAYSLSITDIDPLSYNLLFE--RFLNPNRISMPDFDIDFCPEGRDRVIQYVKDR 423
S SSLVA + I++I+PL + L E ++ N +D+ RD K
Sbjct: 889 SIGSSLVANLIGISEINPLVPHYLCESCQYFEVNEEVDDGYDLMV----RDCPKCGAKAA 944
Query: 424 YGKDAVSQIVTFGT-MAAKG-AIRDVGRVLDLRYS------FCDSISKLIPFKPGKLITL 475
+ D + + F T M G I D+ Y + + F+ G + T+
Sbjct: 945 FKGDGHN--IPFATFMGFAGDKIPDIDLNFSSEYQAKAHAYVRELFGEQYTFRAGTIATV 1002
Query: 476 SN--AIKEEPQLAERIKNEE-EVRQLIELAKQ-VEGIIRNVGMHAGGVLIAPS--KLINF 529
+ A E IK E IE KQ + GI R G H GG++I P+ + F
Sbjct: 1003 AEKTAYGYARNYFEIIKQTELATAPEIERFKQKLVGIKRTTGQHPGGIMIFPNHKSVYEF 1062
Query: 530 CPL-YKQEGMTGI--ISQYDKDDIEEIGLIKFDFLG 562
P Y + + + ++ D + ++K D LG
Sbjct: 1063 TPCGYPADDTSSDWKTTHFEYDALGNT-ILKLDILG 1097
Score = 68 (29.0 bits), Expect = 5.9e-06, Sum P(3) = 5.9e-06
Identities = 16/63 (25%), Positives = 29/63 (46%)
Query: 6 IHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPII 65
+ L H++ S DG+ + + + A +A+TD N+ Y+ A G+K I
Sbjct: 322 VELVFHTKMSAFDGINSVQEYAQFAKERDWKTIAVTDKDNIHIYPTLYEVAKKYGLKAIY 381
Query: 66 GCD 68
G +
Sbjct: 382 GLE 384
Score = 51 (23.0 bits), Expect = 5.9e-06, Sum P(3) = 5.9e-06
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 838 IKGTGKSTIEAIVTERKFGFFTNLFDFTKR--IDKKY 872
I G G++ +I+ R F++L DF KR I KK+
Sbjct: 1384 IPGMGEAVANSIIEARNEKPFSSLDDFKKRTKITKKH 1420
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.140 0.404 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1149 1121 0.00089 123 3 11 22 0.37 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 24
No. of states in DFA: 623 (66 KB)
Total size of DFA: 473 KB (2221 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:06
No. of threads or processors used: 24
Search cpu time: 103.01u 0.07s 103.08t Elapsed: 00:01:09
Total cpu time: 103.03u 0.07s 103.10t Elapsed: 00:01:15
Start: Thu Aug 15 12:43:19 2013 End: Thu Aug 15 12:44:34 2013