RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9396
(1149 letters)
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like
nucleotidyltransferase fold, transferase; HET: DNA; 3.00A
{Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Length = 1220
Score = 1411 bits (3655), Expect = 0.0
Identities = 423/1227 (34%), Positives = 639/1227 (52%), Gaps = 113/1227 (9%)
Query: 3 PQFIHLRLHSEYSIIDGLLRINDVIEAAA--NDYQPALAITDLSNLFGIIKFYKSAYNKG 60
+F HL H+++S++DG ++ D+++ PALA+TD NLFG ++FYK A G
Sbjct: 5 LKFAHLHQHTQFSLLDGAAKLQDLLKWVKETTPEDPALAMTDHGNLFGAVEFYKKATAMG 64
Query: 61 IKPIIGCDVWITNE---------IENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYG 111
+KPIIG + ++ E + L LL K+ GY L L S+AY+E Y
Sbjct: 65 VKPIIGYEAYVAAESRFDRKRGKGLDGGYFHLTLLAKDFTGYQNLVRLASRAYLEG-FYE 123
Query: 112 RAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEI 171
+ I E L + + GLIALSG +I + R D+AE IF D F+IEI
Sbjct: 124 KPRIDREILRE--HAQGLIALSGCLGAEIPQFILQDRLDLAEARLNEDLSIFGDRFFIEI 181
Query: 172 QRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKR 231
Q P Q A L +VAT+ +++K + AHEV I L + +R
Sbjct: 182 QNHGLPEQKKVNQVLKEFARKYGLGMVATNDGHYVRKEDARAHEVLLAIQSKTTLDDPER 241
Query: 232 IKKFTKEQNFKTQSEMIKLFYDIPS---AIQNTIEIAKRCNLKLEFGKP---KLPKFPTP 285
+ E KT EM + + NT+EIA+ C++ L G ++P+FP P
Sbjct: 242 WRFPCDEFYVKTPEEMRAMLPEAEWGDEPFDNTVEIARMCDVDLPIGDKMVYRIPRFPLP 301
Query: 286 KNININDFLISKSKHGLKKRLLN------------------------------------- 308
+ +L + GL +R +
Sbjct: 302 EGRTEAQYLRELTFLGLLRRYPDRITEAFYREVLRLLGTMPPHGDERALAEALARVEEKA 361
Query: 309 -------LYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVG 361
L + + R +E+ I +M F GYFLIV D+I WA+ + + VG
Sbjct: 362 WEELRKRLPPLEGVREWTAEAILHRALYELSVIERMGFPGYFLIVQDYINWARGHGVSVG 421
Query: 362 PGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVK 421
PGRGS A SLVAY++ IT+IDPL + LLFERFLNP R+SMPD D DF RDRVIQYV+
Sbjct: 422 PGRGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRERDRVIQYVR 481
Query: 422 DRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKE 481
+RYG+D V+QI TFG++A+K A++DV RV + + + ++KLIP + GK L AI+
Sbjct: 482 ERYGEDKVAQIGTFGSLASKAALKDVARVYGIPHKKAEELAKLIPVQFGKPKPLQEAIQV 541
Query: 482 EPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYK-QEGMTG 540
P+L ++ +E +RQ+IE+A ++EG+ R+ +HA GV+IA L + PL + QEG
Sbjct: 542 VPELRAEMEKDERIRQVIEVAMRLEGLNRHASVHAAGVVIAAEPLTDLVPLMRDQEGR-- 599
Query: 541 IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
++QYD +E +GL+K DFLGL TL+ LD+ +K+ +K ++LPL+D T+
Sbjct: 600 PVTQYDMGAVEALGLLKMDFLGLRTLTFLDEARRIVKE--SKGVELDYDRLPLDDPKTFE 657
Query: 601 LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGE-- 658
LL + T VFQLES GM ++ KP E+IIAL+SLYRPGPM+ I + RR HG+
Sbjct: 658 LLSRGETKGVFQLESGGMTATVRGLKPRRLEDIIALVSLYRPGPMEHIPTYIRRHHGQEP 717
Query: 659 ----YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEM 714
F + + + +L ETYGI VYQEQ+MQIA + GYSLG+ADLLRRA+GKK+ EM
Sbjct: 718 VSYAEFPHAEKYLRPILDETYGIPVYQEQIMQIASQVAGYSLGEADLLRRAMGKKRVEEM 777
Query: 715 IEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSS 774
+HR+ F GA + G+ + +AN +F+ +E FA YGFNKSHA AY+LLSY TAY+K HY
Sbjct: 778 QKHRERFVRGAKERGVPEEEANRLFDMLEAFANYGFNKSHAAAYSLLSYQTAYVKAHYPV 837
Query: 775 FFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYG 834
FMAA LS+ D++K+ ++DA + G+ +LPP++N S + F ++I +G
Sbjct: 838 EFMAALLSVERHDSDKVAEYIRDA-RALGIPVLPPDVNRSGFDFKV------VGEEILFG 890
Query: 835 LGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEK 893
L A+K G+ AI+ ER + G F +L DF KR+ ++ +N+R + SL+ +GA D F
Sbjct: 891 LSAVKNVGEMAARAILEERERGGPFKSLGDFLKRLPEQVVNKRALESLVKAGALDAF-GD 949
Query: 894 RYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEK 951
R L+AS++ L+ A +T++ + LF + V+ + L EK
Sbjct: 950 RARLLASLEPLLRWAAETRERGRSGLVGLFAEVEEP------PLVEASPLDEITMLRYEK 1003
Query: 952 KVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS-------CTVSGIITELKLKTTYRG 1004
+ LG +S H Y +R+ + EL +SG++ E+ K T G
Sbjct: 1004 EALGIYVSGHPVLRYP-GLREVASCTIEELSEFVRELPGKPKVLLSGMVEEVVRKPTRSG 1062
Query: 1005 KIL-IIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
++ + D + ++EV++ + YE LKE+ L+V +V + +R+ A+ ++
Sbjct: 1063 GMMARFTLSDETGALEVVVFGRAYEGVSPKLKEDIPLLVLAEVEKGE---ELRVLAQAVW 1119
Query: 1064 DINVARILYGK---KFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKF 1120
+ + ++ LK +L LP L E F
Sbjct: 1120 TLEEVLEAPKALEVEVDHALLDEKGVARLKSLLDEH--PGSLPVYLRVLGPFG---EALF 1174
Query: 1121 PLNYKVQPIDDLKLALINLGLYNAIIE 1147
L +V+ ++ L G ++
Sbjct: 1175 ALR-EVRVGEEALGLLEAEGYRAYLVP 1200
>2hnh_A DNA polymerase III alpha subunit; DNA replication,
nucleotidyltransferase, beta, PHP, transferase; HET:
DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Length = 910
Score = 1396 bits (3615), Expect = 0.0
Identities = 436/918 (47%), Positives = 617/918 (67%), Gaps = 22/918 (2%)
Query: 3 PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
P+F+HLR+HS+YS+IDGL + +++ AA PALAITD +NL G++KFY + + GIK
Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63
Query: 63 PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
PI+G D + ++ + + L +L NN GY L L+SKAY I +WL +
Sbjct: 64 PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIE 123
Query: 123 NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
+GLI LSG +GD+G ++ G + + + + + FPD +++E+ R +P+
Sbjct: 124 --LNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181
Query: 183 IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
+ + +A LP+VAT+ ++F+ ++F AHE+R I +G L + KR + ++ +Q +
Sbjct: 182 LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241
Query: 243 TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
++ EM +LF DIP A+ NT+EIAKRCN+ + G+ LP+FPT +++ D+L+ ++K GL
Sbjct: 242 SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTG-DMSTEDYLVKRAKEGL 300
Query: 303 KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
++RL L+ D E + Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360
Query: 363 GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420
Query: 423 RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
YG+DAVSQI+TFGTMAAK IRDVGRVL Y F D ISKLIP PG +TL+ A + E
Sbjct: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478
Query: 483 PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
PQL E + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY E +
Sbjct: 479 PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538
Query: 543 SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKK--INTKTTNFSLNKLPLNDKDTYN 600
+Q+DK D+E GL+KFDFLGL TL+I++ + I K + +PL+DK +++
Sbjct: 539 TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598
Query: 601 LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
+L+++ T AVFQLES+GMK+++K +PD FE++IAL++L+RPGP+ ++ NF RKHG
Sbjct: 599 MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658
Query: 658 EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
E +YPD K VL TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK
Sbjct: 659 EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718
Query: 713 EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
EM + R F GA K G++ A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719 EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778
Query: 773 SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
+ FMAA ++ MD+T K+ LV + GL ILPP+IN Y+F +I
Sbjct: 779 PAEFMAAVMTADMDNTEKVVGLVDEC-WRMGLKILPPDINSGLYHFHVN-----DDGEIV 832
Query: 833 YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
YG+GAIKG G+ IEAI+ R K G+F LFD R D K +NRR++ LI SGAFD
Sbjct: 833 YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892
Query: 892 EKRYMLVASIDVALKNAE 909
R L+ S+ ALK A+
Sbjct: 893 PHRAALMNSLGDALKAAD 910
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA
polymerase III; HET: DGT; 2.39A {Geobacillus
kaustophilus} PDB: 3f2c_A* 3f2d_A*
Length = 1041
Score = 784 bits (2028), Expect = 0.0
Identities = 192/1026 (18%), Positives = 368/1026 (35%), Gaps = 221/1026 (21%)
Query: 5 FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
+ L LH+ S +D + + +IE A PA+A+TD + + + Y +A G+K I
Sbjct: 116 RVELHLHTPMSQMDAVTSVTKLIEQAKKWGHPAIAVTDHAVVQSFPEAYSAAKKHGMKVI 175
Query: 65 IGCDVWITNEIEN-------------KKPSRLLLLVKNNNGYLQLCELLSKAYIENINYG 111
G + I ++ P + LL +N G L +L+S ++I+ +
Sbjct: 176 YGLEANIVDDGVPIAYNETHRRLGSGSGPFHVTLLAQNETGLKNLFKLVSLSHIQYF-HR 234
Query: 112 RAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRW--SKIFPDNFYI 169
I L K ++DGL+ SG G++ + + E+ AR + ++ P + Y
Sbjct: 235 VPRIPRSVLVK--HRDGLLVGSGCDKGELFDNLIQKAPEEVEDIARFYDFLEVHPPDVYK 292
Query: 170 EIQR----FKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEI 225
+ + + I+ + + +++P+VAT + +L + + ++ G
Sbjct: 293 PLIEMDYVKDEEMIKNIIRSIVALGEKLDIPVVATGNVHYLNPEDKIYRKILIHSQGGAN 352
Query: 226 LSNTKRIKKFTKEQNFKTQSEMIKLFYDIPS------AIQNTIEIAKRCNLKLEFGKPKL 279
N + F+T +EM+ F + + NT +IA KP
Sbjct: 353 PLNRHE----LPDVYFRTTNEMLDCFSFLGPEKAKEIVVDNTQKIASLI----GDVKPIK 404
Query: 280 PKFPTPKNININDFLISKSKHGLKKRLLNLYKD--PEIYKCEKLRYKKRLQFEIETIIKM 337
+ TP+ ++ + S K+ Y D P++ + +RL+ E+++II
Sbjct: 405 DELYTPRIEGADEEIREMSYRRAKEI----YGDPLPKLVE-------ERLEKELKSIIGH 453
Query: 338 NFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLS------------ 385
F+ +LI ++ + ++ VG RGS SS VA IT+++PL
Sbjct: 454 GFAVIYLISHKLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYVCPNCKHSE 512
Query: 386 -----------------------------YNLLFERFLNPNRISMPDFDIDFCPEGRDRV 416
+++ FE FL +PD D++F E + R
Sbjct: 513 FFNDGSVGSGFDLPDKNCPRCGTKYKKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRA 572
Query: 417 IQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLS 476
Y K +G+D V + T GT+A K A V
Sbjct: 573 HNYTKVLFGEDNVYRAGTIGTVADKTAYGFVKAY-------------------------- 606
Query: 477 NAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSK--LINFCPLYK 534
A E ++ LA G+ R G H GG+++ P + +F P+
Sbjct: 607 ---------ASDHNLELRGAEIDRLAAGCTGVKRTTGQHPGGIIVVPDYMEIYDFTPIQY 657
Query: 535 ---QEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKL 591
+ +D I + L+K D LG +++ + +
Sbjct: 658 PADDTSSEWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQ--------DLSGIDPKTI 708
Query: 592 PLNDKDTYNLLKKAN--------------TVAVFQLESQGMKNMLKEAKPDYFEEIIALI 637
P +D D + T+ + + ++ ++ ML+E +P F E++ +
Sbjct: 709 PTDDPDVMGIFSSTEPLGVTPEQIMCNVGTIGIPEFGTRFVRQMLEETRPKTFSELVQIS 768
Query: 638 SLYRPGPMDLIKNFCRRKHGEYF-NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSL 696
L + L + + +V+ IMVY + + + + +
Sbjct: 769 GLSHGTDVWL-------GNAQELIQNGTCTLSEVIGCRDDIMVYL--IYRGLEPSLAFKI 819
Query: 697 GQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHAT 756
+ +R+ G E + KH E + + K Y F K+HA
Sbjct: 820 --MESVRKGKGLTPEFEA--------------EMRKHDVPEWYIDSCKKIKYMFPKAHAA 863
Query: 757 AYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKIL-----VKDAIKTC--------- 802
AY L++ AY K H+ + A+ ++ +D + ++ ++ I+
Sbjct: 864 AYVLMAVRIAYFKVHHPLLYYASYFTVRAEDFDLDAMIKGSAAIRKRIEEINAKGIQATA 923
Query: 803 ------------------GLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKS 844
G S ++ S+ F I + AI G G +
Sbjct: 924 KEKSLLTVLEVALEMCERGFSFKNIDLYRSQATEFVIDG-----NSLIPPFNAIPGLGTN 978
Query: 845 TIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEK-RYMLVASIDV 903
+AIV R+ G F + D +R +++ ++ L + G D + + L +
Sbjct: 979 VAQAIVRAREEGEFLSKEDLQQRGK---LSKTLLEYLESRGCLDSLPDHNQLSLFSGGHH 1035
Query: 904 ALKNAE 909
+
Sbjct: 1036 HHHHHH 1041
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 75.3 bits (184), Expect = 9e-14
Identities = 77/527 (14%), Positives = 152/527 (28%), Gaps = 175/527 (33%)
Query: 9 RLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKS------AYNKGIK 62
RL + LL + +PA + + G++ K+ + ++
Sbjct: 133 RLQPYLKLRQALLEL-----------RPAKNVL----IDGVLGSGKTWVALDVCLSYKVQ 177
Query: 63 PIIGCDV-WITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYG-RAEIRIEWL 120
+ + W+ ++N +L + L + + ++ ++RI +
Sbjct: 178 CKMDFKIFWLN--LKNCNSPETVLEMLQK-----LLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 121 EK--------NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQ 172
+ Y++ L+ L + VQN + F KI +
Sbjct: 231 QAELRRLLKSKPYENCLLVLL-----N----VQNAK--AWNAFNLS-CKI------LLTT 272
Query: 173 RFKQPNMNFQIQQFINIASNINLPIVA-----THP------IQFLK-KTEFLAHEVRTC- 219
RFKQ + F++ A+ ++ + T +++L + + L EV T
Sbjct: 273 RFKQ------VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 220 ------IAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLE 273
IAE I + K N + +I+ ++ E ++ +L
Sbjct: 327 PRRLSIIAE-SIRDGLATWDNW-KHVNCDKLTTIIESSLNV----LEPAEY-RKMFDRLS 379
Query: 274 -FGKPKLPKFPTPKNINI---------------NDFLISKSKHGLKKRLLN------LYK 311
F P + +I + ++ H K L+
Sbjct: 380 VF----------PPSAHIPTILLSLIWFDVIKSDVMVVVNKLH--KYSLVEKQPKESTIS 427
Query: 312 DPEIY-----KCEKL---------RYKKRLQFEIETIIKMNFSGYF-------------- 343
P IY K E Y F+ + +I YF
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487
Query: 344 -------LIVSDFIQWAKNNSIPVGPGRGSGASS------LVAYSLSITDIDPLSYNLL- 389
++ DF ++ + + S L Y I D DP L+
Sbjct: 488 ERMTLFRMVFLDF-RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN 546
Query: 390 -FERFL---NPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQI 432
FL N I D+ + + ++A Q+
Sbjct: 547 AILDFLPKIEENLICSKYTDL------LRIALMAEDEAIFEEAHKQV 587
Score = 69.5 bits (169), Expect = 5e-12
Identities = 96/705 (13%), Positives = 197/705 (27%), Gaps = 203/705 (28%)
Query: 384 LSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVI--QYVKDRYG-KDAVSQI-VTFGTMA 439
Y + F + + +FD + ++ + + KDAVS F T+
Sbjct: 16 YQYKDILSVFEDA---FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL 72
Query: 440 AKG---AIRDVGRVLDLRYSF-CDSISK--LIPFKPGKL-ITLSNAIKEEPQLAER--IK 490
+K + V VL + Y F I P ++ I + + + Q+ + +
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 491 NEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGI------ISQ 544
+ +L + ++ A VLI +G+ G +
Sbjct: 133 RLQPYLKLRQALLELR--------PAKNVLI--------------DGVLGSGKTWVALDV 170
Query: 545 YDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKK 604
++ K DF I+++ N + L L + +
Sbjct: 171 CLSYKVQC----KMDF-----------KIFWLNLKNCNSPETVLEML----QKLLYQIDP 211
Query: 605 ANTVAVFQLESQGMK-NMLKEAKPDYFEEIIALISLYRPGPMDLI--KNFCRRKHGEYFN 661
T + ++ + ++ + +P L+ N K F
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKS--------KPYENCLLVLLNVQNAKAWNAF- 262
Query: 662 YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
+ K +L T + Q+ L + H
Sbjct: 263 --NLSCK-ILLTT--------RFKQVTDFLSA-------------ATTTHISLDHHSM-- 296
Query: 722 QNGAIKYGLSKHKANEIFNEIEKFAGYGFNK----SHATAYALLSYYTAYLKTHYSSFFM 777
L+ + + K+ T LS ++ +++
Sbjct: 297 -------TLTPDEVKSLL---LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW-- 344
Query: 778 AANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGA 837
N D + I++ L++L P + +
Sbjct: 345 -DNWKHVNCDK------LTTIIESS-LNVLEPAEYRKMFDRLSVFPPSAH---------- 386
Query: 838 IKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC-FNEKRYM 896
I I+ + ++ K ++N L + E
Sbjct: 387 --------IPTILLSL---IWFDV--------IKSDVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 897 LVA-SIDVALKNAEKT---KKFINQLSLFKNDDNNNL-KEYL-NYVKVPSWSKKQELIEE 950
+ + +++ +K + + ++ ++ K D+++L YL Y
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY--------------- 472
Query: 951 KKVLGFC--LSEHIFCIYETE-IRQFIPIYLS----ELK---PTYSCTVSGIITEL--KL 998
F + H+ I E + F ++L E K + + SG I +L
Sbjct: 473 -----FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 999 KTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVS 1043
K Y+ I DN E ++N L + K E LI S
Sbjct: 528 K-FYKPYIC-----DNDPKYERLVNAIL----DFLPKIEENLICS 562
Score = 67.6 bits (164), Expect = 2e-11
Identities = 91/675 (13%), Positives = 172/675 (25%), Gaps = 213/675 (31%)
Query: 240 NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPK------FPTPKNININDF 293
+F+T E + DI S ++ C + K L K + ++
Sbjct: 8 DFET-GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 294 LI----SKSKHGLKK---------------RLLNLYKDPEIYKCEKLRYKKRLQFEIETI 334
L SK + ++K + + P + + + RL + +
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 335 IKMNFS---GYFLIVSDFIQWAKNNSIPV-GPGRGSGASSLVAYSLSITDIDPLSYNLLF 390
K N S Y + ++ ++ + G GSG + +
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL-GSGKTWVALDVCL------------- 172
Query: 391 ERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRV 450
+ + + + I + + V
Sbjct: 173 ------------SYKVQCKMDFK---IFW-------------LNLKN------CNSPETV 198
Query: 451 LDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEVRQLIELAKQVEG--I 508
L++ I + S+ I+ E+R+L++ +
Sbjct: 199 LEMLQKLLYQIDP-------NWTSRSDHSSNIKLRIHSIQ--AELRRLLKSKPYENCLLV 249
Query: 509 IRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDF----LGLT 564
+ NV + F+ L LT
Sbjct: 250 LLNV--------------------------------QNAKAWN-----AFNLSCKIL-LT 271
Query: 565 TLSILDKTIYFIKKINTKTTNFSLNKL--PLNDKDTYNLLKKANTVAVFQLESQGMKN-- 620
T K + TT+ SL+ L + +LL K L + +
Sbjct: 272 T---RFKQVTDFLS-AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 621 --------MLKE--AKPDYF--------EEIIALISLYRPGPMDLIKNFCRRKHGEYFN- 661
+++ A D + II SL P + K F + +
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE-SSLNVLEPAEYRKMF------DRLSV 380
Query: 662 YPD--PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIG--------KKKT 711
+P +LS + ++ + VM + L YSL + I K K
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSD-VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 712 SEMIE-HRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSY-YTAYLK 769
HR Y N + F + Y Y + +
Sbjct: 440 ENEYALHRSIVD----HY-----------NIPKTFDSDDLIPPYLDQY---FYSHIGH-- 479
Query: 770 THYSSFFMAANLSLSMDDTNKI---------KILVKDAIKTCGLSILPPNINLSKYYFFP 820
H M + KI SIL L Y +
Sbjct: 480 -H----LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY- 533
Query: 821 IIESDGKHKKIRYGL 835
I ++D K++++ +
Sbjct: 534 ICDNDPKYERLVNAI 548
Score = 51.0 bits (121), Expect = 2e-06
Identities = 85/588 (14%), Positives = 183/588 (31%), Gaps = 186/588 (31%)
Query: 700 DLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSH---AT 756
D+ + + K++ +I + + K E+ ++KF ++ +
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM---VQKFVEEVLRINYKFLMS 96
Query: 757 AYALLSYYTAYLKTHYSSF---FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINL 813
+ + Y N + + ++++ +K ++ L L P N+
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK--LRQA-LLELRPAKNV 153
Query: 814 SKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIV-----TERKFGF----------- 857
+ G+ G+GK+ + V + K F
Sbjct: 154 -----------------LIDGVL---GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 858 -----FTNLFDFTKRIDKKYIN-------------------RRII------NSLI----- 882
L +ID + + RR++ N L+
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 883 -NSGAFDCFNEKRYMLVASIDV----ALKNAEKTKKFINQLSL-FKNDDNNNLKEYLNYV 936
N+ A++ FN +L+ + L A T ++ S+ D+ +L L Y+
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL--LLKYL 311
Query: 937 KVPSWSKKQELIEEKK--------VLGFCLSEHIFCIYET-------EIRQFIPIYLSEL 981
+ Q+L E ++ + + + ++ ++ I L+ L
Sbjct: 312 DC----RPQDLPREVLTTNPRRLSIIAESIRDGL-ATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 982 KPT-----Y-SCTV---SGIITELKLKTTYRGKILIIV-IDDNSNSVEVIINNQLYEKNK 1031
+P + +V S I +L ++ D + V V++ N+L+
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPT---------ILLSLIWFDVIKSDVMVVV-NKLH--KY 414
Query: 1032 NILKENE----------LLIVSGKVLEDRFL-KNI--RINAEKIFDIN------------ 1066
+++++ L + K+ + L ++I N K FD +
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 1067 ------VARILYGKKFSVMFNRTF-NISILK-KILLRFKCKNGLPFVL--------Y--Y 1108
+ I + ++ + +F F + L+ KI N +L Y Y
Sbjct: 475 SHIGHHLKNIEHPERMT-LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 1109 CINKSIKYE------MKFPLNYKVQPIDDLKLALINLGL---YNAIIE 1147
+ KYE + F + I L+ + L AI E
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 72.4 bits (177), Expect = 9e-13
Identities = 93/542 (17%), Positives = 165/542 (30%), Gaps = 197/542 (36%)
Query: 21 LRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIENKKP 80
L ND+ AA T L +IK Y +A +P + K
Sbjct: 96 LEGNDIHALAAK--LLQENDTTLVKTKELIKNYITARIMAKRP-----------FDKKSN 142
Query: 81 SRLLLLVK--------------NNNGYLQLCEL--LSKAYIENINYGRAEIRIEWLEKNK 124
S L V N + Y + EL L + Y +
Sbjct: 143 SALFRAVGEGNAQLVAIFGGQGNTDDYFE--ELRDLYQTYHVLV---------------- 184
Query: 125 YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-----KQPNM 179
LI S L +++ K+F I + P+
Sbjct: 185 --GDLIKFSAETL-----------SELIRT-TLDAEKVFTQGL--NILEWLENPSNTPDK 228
Query: 180 NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEG----EILSNTKRIKKF 235
++ ++I I+ P++ IQ LAH V T G E+ S K
Sbjct: 229 DY----LLSIP--ISCPLIGV--IQ-------LAHYVVTAKLLGFTPGELRSYLKGATGH 273
Query: 236 TK-------------EQNFKTQS-EMIK-LFYDI--------------PSAIQNTIEIAK 266
++ ++F + I LF+ I PS +++++E +
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKAITVLFF-IGVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 267 R--------CNLKLEFGKPKLPKF----PTPKNINI---N---DFLIS---KSKHGLKKR 305
NL E + + K P K + I N + ++S +S +GL
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT 392
Query: 306 LLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRG 365
L + + ++ + +R K+ FS FL PV
Sbjct: 393 LRKAKAPSGLDQS-RIPFSER---------KLKFSNRFL--------------PV----- 423
Query: 366 SGA---SSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
+ S L+ + + + D + N+ F N I +P +D +G D ++ +
Sbjct: 424 -ASPFHSHLLVPASDLINKDLVKNNVSF----NAKDIQIPVYDTF---DGSD--LRVLSG 473
Query: 423 RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGK---LITLSNAI 479
+ V I+ V + + ++ F PG L L++
Sbjct: 474 SISERIVDCIIR-------------LPV-KWETTTQFKATHILDFGPGGASGLGVLTHRN 519
Query: 480 KE 481
K+
Sbjct: 520 KD 521
Score = 65.8 bits (160), Expect = 7e-11
Identities = 73/430 (16%), Positives = 131/430 (30%), Gaps = 149/430 (34%)
Query: 8 LR-LHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIG 66
LR L+ Y ++ + D+I+ +A + T + K + G
Sbjct: 173 LRDLYQTYHVL-----VGDLIKFSAETLSELIRTTLDAE-----KVFTQ----------G 212
Query: 67 CDV--WITNEIENKKPSRLLL--------LVKNNNGYLQLCELLSKAYIENINYGRAEIR 116
++ W+ N + P + L L+ G +QL + A + G E+R
Sbjct: 213 LNILEWLENP--SNTPDKDYLLSIPISCPLI----GVIQLAHYVVTAKLLGFTPG--ELR 264
Query: 117 IEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDN--------FY 168
L +G H + AV IAE W F + F+
Sbjct: 265 ----------SYLKGATG-HSQGLVTAVA-----IAE--TDSWES-FFVSVRKAITVLFF 305
Query: 169 I--EIQR-FKQPNMNFQIQQFINIASNINLP--------IVATHPIQFLKKT-EFLAHEV 216
I + ++ I + ++ +N +P + ++ KT L
Sbjct: 306 IGVRCYEAYPNTSLPPSILE-DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGK 364
Query: 217 RTCIAEGEILSNTKRIKKFTKEQNF------------KTQSEMIKLFYDIPSAI-QNTIE 263
+ I+ L N + N K PS + Q+ I
Sbjct: 365 QVEIS----LVNGAK--------NLVVSGPPQSLYGLNLTLRKAK----APSGLDQSRIP 408
Query: 264 IAKRCNLKLEFGKPKLPKFPTPKNININDF---LISKSKHGLKKRLLNLYKDPEIYKCEK 320
++R KL+F LP +P F L+ + + K L+ K+ + +
Sbjct: 409 FSER---KLKFSNRFLPVA-SP-------FHSHLLVPASDLINKDLV---KNNVSFNAKD 454
Query: 321 LR---YK----KRLQFE----IETIIKMNFSGYFLIVSDFIQWAKNNSIPV------GPG 363
++ Y L+ E I+ I+ ++W GPG
Sbjct: 455 IQIPVYDTFDGSDLRVLSGSISERIVDC-------IIRLPVKWETTTQFKATHILDFGPG 507
Query: 364 RGSGASSLVA 373
SG L
Sbjct: 508 GASGLGVLTH 517
Score = 64.3 bits (156), Expect = 2e-10
Identities = 108/632 (17%), Positives = 177/632 (28%), Gaps = 246/632 (38%)
Query: 452 DLRYSFCDSISKLIPFKPGKLITLSNAIKEE-----PQLAERIKNEEEVRQLIELAKQVE 506
L + L+P S ++E+ P+ E ++E EL
Sbjct: 15 SLEHVL------LVP--TASFFIASQ-LQEQFNKILPEPTEGFAADDEPTTPAELV---- 61
Query: 507 GIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKF--DFLG-- 562
K + + + G Q+D + + L +F +L
Sbjct: 62 -----------------GKFLGYVSSLVEPSKVG---QFD--QVLNLCLTEFENCYLEGN 99
Query: 563 ------LTTLSILDKTIYFIKKI--NTKTTNFSLNKLPLNDKDTYNLLKKANT-----VA 609
L D T+ K++ N T + P + K L + VA
Sbjct: 100 DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKR-PFDKKSNSALFRAVGEGNAQLVA 158
Query: 610 VFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNF-------------CRRKH 656
+F QG + DYFEE+ L Y DLIK +
Sbjct: 159 IFG--GQGNTD-------DYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 657 GEYFN------YPDPR-TKDVLSETY----GIMVYQ-EQVMQIAQILGGYSLGQADLLRR 704
+ N P KD L I V Q + A++LG ++ G
Sbjct: 210 TQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG-FTPG------- 261
Query: 705 AIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYY 764
E R + + G + H + TA A+
Sbjct: 262 -----------ELRSYLK------GATGHSQGLV-----------------TAVAI---- 283
Query: 765 TAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGL--SILPPNINLSKYYFFPII 822
A + + SFF++ ++ +L G+ PN +L P I
Sbjct: 284 -AETDS-WESFFVSVRKAI--------TVLFF-----IGVRCYEAYPNTSLP-----PSI 323
Query: 823 ESDGKHKKIRYGLG------AIKGTGKSTIEAIVTERKFGFFTNL-FDFTKRIDKKYINR 875
D + G +I + ++ V + TN K++ I
Sbjct: 324 LED----SLENNEGVPSPMLSISNLTQEQVQDYVNK------TNSHLPAGKQV---EI-- 368
Query: 876 RIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNY 935
SL+N + ++V+ SL+ L L
Sbjct: 369 ----SLVNG--------AKNLVVSG---------------PPQSLY------GLNLTLRK 395
Query: 936 VKVPSWSKKQELI---EEKKVLGFCLSEHIFCIYETEIRQFIPI---YLSE-LKPTYSCT 988
K PS Q I E K +F+P+ + S L P
Sbjct: 396 AKAPS-GLDQSRIPFSERKLKFS---------------NRFLPVASPFHSHLLVP----A 435
Query: 989 VSGIITELKLKT-TYRGKILII-VID--DNSN 1016
I +L ++ K + I V D D S+
Sbjct: 436 SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD 467
Score = 54.3 bits (130), Expect = 3e-07
Identities = 37/276 (13%), Positives = 83/276 (30%), Gaps = 97/276 (35%)
Query: 373 AYSLSITDI---DPLSYNLLFE----RFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYG 425
Y SI DI +P++ + F + + N +M F+ +G+ + + K+
Sbjct: 1656 TYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAM-IFET--IVDGKLKTEKIFKE--- 1709
Query: 426 KDAVSQIVTFG--------T-----------------MAAKGAIRD-------------- 446
+ S TF T + +KG I
Sbjct: 1710 INEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAA 1769
Query: 447 ---VGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIK----NEEEVRQLI 499
+ V+ S + +++ F G + A+ + N V
Sbjct: 1770 LASLADVM----SIESLV-EVV-FYRGMTM--QVAVPRDELGRSNYGMIAINPGRVAASF 1821
Query: 500 ELAKQVEGIIRNVGMHAGGVL-IAPSKLINF-CPLYKQEGMTGIISQYDKDDIEEIGLIK 557
++ ++ VG G ++ I N+ + + D ++ + +
Sbjct: 1822 SQE-ALQYVVERVGKRTGWLVEIV-----NYNVE-----NQQYVAAG-DLRALDTVTNV- 1868
Query: 558 FDFLGLTTLSILDKTIYFIKKINTK--TTNFSLNKL 591
+F+ ++KI+ + SL ++
Sbjct: 1869 LNFIK-------------LQKIDIIELQKSLSLEEV 1891
Score = 48.1 bits (114), Expect = 2e-05
Identities = 45/272 (16%), Positives = 82/272 (30%), Gaps = 91/272 (33%)
Query: 244 QSE-MIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPT-------PKNININDFLI 295
Q + M Y A Q+ A K +G F P N+ I+ F
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRADNH-FKDTYG------FSILDIVINNPVNLTIH-FGG 1678
Query: 296 SKSKHGLKKRLLNL-YKDPEIYKCEKLRYKKRLQFEIETIIKMNFSG---------Y--- 342
K K +++ + ++ K + + K + + F +
Sbjct: 1679 EKGKR-IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT---FRSEKGLLSATQFTQP 1734
Query: 343 --FLI-VSDFIQWAKNNSIPVGPGRGSGA-------SSLVAYS--LSITD-IDPLSYNLL 389
L+ + F IP + A ++L + + +SI ++ ++
Sbjct: 1735 ALTLMEKAAFEDLKSKGLIPAD---ATFAGHSLGEYAALASLADVMSIESLVE-----VV 1786
Query: 390 FER---------------------FLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGK-- 426
F R +NP R++ F E V++ V R G
Sbjct: 1787 FYRGMTMQVAVPRDELGRSNYGMIAINPGRVA-----ASFSQEALQYVVERVGKRTGWLV 1841
Query: 427 DAV------SQIVTFGTMAAKGAIRDVGRVLD 452
+ V Q V G + A+ V VL+
Sbjct: 1842 EIVNYNVENQQYVAAGDLR---ALDTVTNVLN 1870
Score = 33.1 bits (75), Expect = 0.79
Identities = 37/250 (14%), Positives = 70/250 (28%), Gaps = 87/250 (34%)
Query: 145 QNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQ 204
+ G+ I EN++ + D + FK+ N + F
Sbjct: 1679 EKGK-RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF-------------RSEKG 1724
Query: 205 FLKKTEF-----LAHEVRTCIAE-------------------GE---------ILS--NT 229
L T+F E E GE ++S +
Sbjct: 1725 LLSATQFTQPALTLMEK--AAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESL 1782
Query: 230 KRIKKF--TKEQNFKTQSEMIKLFYDI----PS---------AIQNTIE-IAKRCNLKLE 273
+ + Q + E+ + Y + P A+Q +E + KR +E
Sbjct: 1783 VEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVE 1842
Query: 274 FGKPKLPKFPTPKNININD--FLISKSKHGLKK--RLLNLYKDPEIYKCEKLRYKKRLQF 329
N N+ + ++ + L +LN K +I +L +
Sbjct: 1843 -----------IVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKI-DIIEL----QKSL 1886
Query: 330 EIETIIKMNF 339
+E + F
Sbjct: 1887 SLEEVEGHLF 1896
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga
maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Length = 780
Score = 49.9 bits (120), Expect = 5e-06
Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 3/101 (2%)
Query: 966 YETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQ 1025
YE R+ + ++L P T G I ++ K IL V+ D V + NQ
Sbjct: 150 YEDR-RKIFKL--NDLLPGEKVTTQGKIVSVETKKFQNMNILTAVLSDGLVHVPLKWFNQ 206
Query: 1026 LYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDIN 1066
Y + + + V+G V + + I+ ++
Sbjct: 207 DYLQTYLKQLTGKEVFVTGTVKSNAYTGQYEIHNAEVTPKE 247
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.1 bits (82), Expect = 0.022
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 12/37 (32%)
Query: 230 KRIKKFTKEQNFKTQSEMIKLFYD--IPS-AIQNTIE 263
+ +KK Q+ + KL+ D P+ AI+ T+E
Sbjct: 20 QALKKL--------QASL-KLYADDSAPALAIKATME 47
Score = 31.5 bits (70), Expect = 0.94
Identities = 8/18 (44%), Positives = 12/18 (66%), Gaps = 4/18 (22%)
Query: 27 IEAA----ANDYQPALAI 40
++A+ A+D PALAI
Sbjct: 25 LQASLKLYADDSAPALAI 42
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET:
PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A
{Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1
d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Length = 607
Score = 37.7 bits (88), Expect = 0.026
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 18/77 (23%)
Query: 12 SEYSIIDGLLRINDVIEAAANDYQPALAIT---DLSNLFGIIKFYKSAYNKGIKPIIGCD 68
+ +I L + DV+ A ++P +T L++ Y
Sbjct: 523 AAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLTHQVS--SCYD-------------V 567
Query: 69 VWITNEIENKKPSRLLL 85
+W+ + E +RL L
Sbjct: 568 LWVAGQTEELATARLAL 584
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics
initiative, RSGI, structural genomics, ligase; 2.30A
{Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Length = 592
Score = 36.9 bits (86), Expect = 0.041
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 11/77 (14%)
Query: 12 SEYSIIDGLLRINDVIEAAANDYQPALAIT---DLSNLFGIIKFYKSAYNKGIKPIIGCD 68
E ++ LL + + AA + P + DL+ + +Y + +
Sbjct: 501 YERALALDLLDFEEAVLEAAEERTPHVLAQYLLDLAASWN--AYYNA------RENGQPA 552
Query: 69 VWITNEIENKKPSRLLL 85
+ E + RL L
Sbjct: 553 TPVLTAPEGLRELRLSL 569
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural
genomics, protein structure initiative; 1.74A
{Archaeoglobus fulgidus} SCOP: e.71.1.1
Length = 205
Score = 34.2 bits (78), Expect = 0.13
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 835 LGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRID-----KKYINRRIINSL 881
L + G GK + AI+ ERK F + D +R+ +K I RII +
Sbjct: 134 LELLPGVGKKMMWAIIEERKKRPFESFEDIAQRVKGIQRPEKLIVSRIIYEI 185
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase, nucleotide-binding, protein
biosynthesis, ligase/RNA complex; HET: ANP; 2.00A
{Pyrococcus horikoshii} PDB: 2zuf_A
Length = 629
Score = 33.9 bits (78), Expect = 0.39
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 18/77 (23%)
Query: 12 SEYSIIDGLLRINDVIEAAANDYQPA-LA--ITDLSNLFGIIKFYKSAYNKGIKPIIGCD 68
E ++ L + ++E A D +P +A +L++LF KFY D
Sbjct: 545 RERELVIMLSKFPRIVEQAGKDVKPHLIAWFANELASLFN--KFYM-------------D 589
Query: 69 VWITNEIENKKPSRLLL 85
+ E + +RLLL
Sbjct: 590 HPVLKAEEGVREARLLL 606
>2anu_A Hypothetical protein TM0559; predicted metal-dependent
phosphoesterase (PHP famil structural genomics, joint
center for structural genomics; 2.40A {Thermotoga
maritima} SCOP: c.6.3.1
Length = 255
Score = 31.6 bits (71), Expect = 1.4
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 8 LRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSA 56
+H+ S DG L + +V++ ++ITD ++ K
Sbjct: 24 FHVHTNMS--DGHLPLGEVVDLFGKHGVDVVSITDHIVDRRTLEQRKRN 70
>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P
transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A
Length = 115
Score = 28.9 bits (65), Expect = 4.0
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 270 LKLEFGKPKLPKFPTPKNI-NINDFLISKSKHGLKKRLLNLYKDPEIYKCEKLR 322
L+ E+G LP FP PK + ++ + + + L+K + + +DP + E
Sbjct: 50 LRKEYGANVLPAFP-PKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFN 102
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 30.4 bits (69), Expect = 4.3
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 492 EEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDD 549
E + Q LA+ + ++ G L+ + +N C + + G D +
Sbjct: 400 ERRIDQAFVLARYLVEEMKK---REGFELVMEPEFVNVCFWFVPPSLRGKQESPDYHE 454
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT,
topoisomerase II binding protein, checkpoint; NMR {Homo
sapiens} SCOP: c.15.1.5
Length = 132
Score = 28.7 bits (64), Expect = 5.0
Identities = 6/44 (13%), Positives = 14/44 (31%)
Query: 624 EAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYFNYPDPRT 667
+A D + + + +D ++ G FN +
Sbjct: 35 QAPEDLLDGCRIYLCGFSGRKLDKLRRLINSGGGVRFNQLNEDV 78
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA
interaction, solution structure, DNA binding protein;
NMR {Homo sapiens} SCOP: a.140.2.1
Length = 151
Score = 28.9 bits (64), Expect = 6.1
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 929 LKEYLNYVKVPSWSKKQELIE 949
LKE + S KKQEL+E
Sbjct: 69 LKEACRAYGLKSGLKKQELLE 89
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding
protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A*
3p7z_A* 2d4q_A*
Length = 256
Score = 29.5 bits (66), Expect = 6.4
Identities = 11/71 (15%), Positives = 25/71 (35%)
Query: 146 NGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQF 205
N +F +W +FP Y + N N ++++ + + + + F
Sbjct: 69 GPSNRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVF 128
Query: 206 LKKTEFLAHEV 216
+ LA +
Sbjct: 129 IDCPGKLAEHI 139
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 7.8
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 13/45 (28%)
Query: 473 ITLSNAIKEEP------------QLAERIKNEEEVRQ-LIELAKQ 504
I ++ + +EP +L E + + Q E AK+
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKK 118
>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo
sapiens} SCOP: d.189.1.1
Length = 143
Score = 28.0 bits (62), Expect = 9.7
Identities = 8/53 (15%), Positives = 15/53 (28%), Gaps = 1/53 (1%)
Query: 271 KLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYK-DPEIYKCEKLR 322
K LP P + + + L + +L + E +R
Sbjct: 77 KSSALACTLPTLPAKVYVGVKQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVR 129
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.140 0.402
Gapped
Lambda K H
0.267 0.0745 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 17,930,598
Number of extensions: 1150953
Number of successful extensions: 2946
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2872
Number of HSP's successfully gapped: 74
Length of query: 1149
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 1045
Effective length of database: 3,798,009
Effective search space: 3968919405
Effective search space used: 3968919405
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.0 bits)