RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9396
(1149 letters)
>d1m65a_ c.6.3.1 (A:) Hypothetical protein YcdX {Escherichia coli
[TaxId: 562]}
Length = 244
Score = 78.1 bits (191), Expect = 2e-16
Identities = 29/251 (11%), Positives = 61/251 (24%), Gaps = 15/251 (5%)
Query: 6 IHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPII 65
+ L +H+ S ++D I A AITD + N I P +
Sbjct: 3 VDLHMHTVAST-HAYSTLSDYIAQAKQKGIKLFAITDHGPDMEDAPHHWHFINMRIWPRV 61
Query: 66 GCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKY 125
V I IE + + + + L + I + +
Sbjct: 62 VDGVGILRGIEANIKNVDGEIDCSGKMFDSLDLI-----IAGFHEPVFAPHDKATNTQAM 116
Query: 126 QDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFP-DNFYIEIQRFKQPNMNFQIQ 184
+ + + + G A + +N R + +
Sbjct: 117 IATIASGNVHIISHPGNPKYEIDVKAVAEAAAKHQVALEINNSSFLHSRKGSEDNC---R 173
Query: 185 QFINIASNINLPIVATHPIQFLKKTEFLAHEV----RTCIAEGEIL-SNTKRIKKFTKEQ 239
+ + + + IL + +R+ F + +
Sbjct: 174 EVAAAVRDAGGWVALGSDSHTAFTMGEFEECLKILDAVDFPPERILNVSPRRLLNFLESR 233
Query: 240 NFKTQSEMIKL 250
+E L
Sbjct: 234 GMAPIAEFADL 244
>d2anua1 c.6.3.1 (A:5-233) Hypothetical protein TM0559 {Thermotoga
maritima [TaxId: 2336]}
Length = 229
Score = 40.4 bits (93), Expect = 7e-04
Identities = 29/237 (12%), Positives = 60/237 (25%), Gaps = 34/237 (14%)
Query: 8 LRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGC 67
+H+ S DG L + +V++ ++ITD ++ K N I
Sbjct: 8 FHVHTNMS--DGHLPLGEVVDLFGKHGVDVVSITDHIVDRRTLEQRK--RNGEPLGAITE 63
Query: 68 DVW------ITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLE 121
D + + E + ++L+ A + E +E
Sbjct: 64 DKFQDYLKRLWREQKRAWEEYGMILIPGVEITNNTDLYHIVAVDVKEYVDPSLPVEEIVE 123
Query: 122 KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNF 181
K K Q+ L+ + + ++ + EI
Sbjct: 124 KLKEQNALVIAAHPD------RKKQDEEHLSWYLWANMERFKDTFDAWEI---------A 168
Query: 182 QIQQFINIASNINLPIVAT----HPIQFLKKTEFLAHE-----VRTCIAEGEILSNT 229
N VA + E ++ I + ++
Sbjct: 169 NRDDLFNSVGVKKYRYVANSDFHELWHVYSWKTLVKSEKNIEAIKEAIRKNTDVAIY 225
>d2i5ha1 e.71.1.1 (A:16-195) Hypothetical protein AF1531
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 180
Score = 33.2 bits (76), Expect = 0.11
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 11/70 (15%)
Query: 835 LGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRID-----KKYINRRIINSLINSGAFDC 889
L + G GK + AI+ ERK F + D +R+ +K I RII +
Sbjct: 117 LELLPGVGKKMMWAIIEERKKRPFESFEDIAQRVKGIQRPEKLIVSRIIYEI------KN 170
Query: 890 FNEKRYMLVA 899
K + A
Sbjct: 171 PQTKYKLFTA 180
>d1e2wa2 b.84.2.2 (A:169-232) Cytochrome f, small domain
{Chlamydomonas reinhardtii [TaxId: 3055]}
Length = 64
Score = 30.5 bits (69), Expect = 0.14
Identities = 8/65 (12%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 985 YSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSG 1044
Y+ + +G I + + +G + + N V I +++ + + +
Sbjct: 3 YNASAAGKIVAITALSEKKGGFEVSIEKANGEVVVDKI-----PAGPDLIVKEGQTVQAD 57
Query: 1045 KVLED 1049
+ L +
Sbjct: 58 QPLTN 62
>d1ci3m2 b.84.2.2 (M:170-231) Cytochrome f, small domain {Phormidium
laminosum [TaxId: 32059]}
Length = 62
Score = 28.5 bits (64), Expect = 0.62
Identities = 8/65 (12%), Positives = 24/65 (36%), Gaps = 7/65 (10%)
Query: 985 YSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSG 1044
Y+ + +G+IT + G + + ++ ++ I ++ + +G
Sbjct: 3 YNASAAGVIT--AIAKADDGSAEVKIRTEDGTTIVDKI-----PAGPELIVSEGEEVAAG 55
Query: 1045 KVLED 1049
L +
Sbjct: 56 AALTN 60
>d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit
(RPA70) {Human (Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 27.9 bits (62), Expect = 2.6
Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
Query: 972 QFIPIYLSELKPTYSC-TVSGIITELKLKTTYR-----GKILIIVIDDNSNSVEVIINNQ 1025
+ +PI + L P S T+ +T T+ GK+ + + D S + N+
Sbjct: 1 KVVPI--ASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNE 58
Query: 1026 LYEKNKNILKENELLIVSG 1044
+K +++ N++ S
Sbjct: 59 QVDKFFPLIEVNKVYYFSK 77
>d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70
{Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 26.2 bits (58), Expect = 3.4
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 7/34 (20%)
Query: 929 LKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
LKE + S KKQEL+E L++H
Sbjct: 23 LKEACRAYGLKSGLKKQELLE-------ALTKHF 49
>d2uubm1 a.156.1.1 (M:2-126) Ribosomal protein S13 {Thermus
thermophilus [TaxId: 274]}
Length = 125
Score = 26.7 bits (59), Expect = 7.8
Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 15/90 (16%)
Query: 827 KHKKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGA 886
++K++ L I G GK+ + + K G K + + + R
Sbjct: 10 RNKRVDVALTYIYGIGKARAKEAL--EKTGINPA--TRVKDLTEAEVVR----------- 54
Query: 887 FDCFNEKRYMLVASIDVALKNAEKTKKFIN 916
+ E + L + + K I
Sbjct: 55 LREYVENTWKLEGELRAEVAANIKRLMDIG 84
>d2jdid1 a.69.1.1 (D:358-475) F1 ATP synthase beta subunit, domain 3
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 118
Score = 26.6 bits (59), Expect = 8.8
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 882 INSGAFDCFNEKRYMLVASIDVALKNAEKTKK 913
I +G +D E+ + +V I+ A+ A+K +
Sbjct: 87 ILAGEYDHLPEQAFYMVGPIEEAVAKADKLAE 118
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.140 0.402
Gapped
Lambda K H
0.267 0.0503 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,442,185
Number of extensions: 229279
Number of successful extensions: 724
Number of sequences better than 10.0: 1
Number of HSP's gapped: 723
Number of HSP's successfully gapped: 21
Length of query: 1149
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 1054
Effective length of database: 1,103,246
Effective search space: 1162821284
Effective search space used: 1162821284
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.7 bits)