Query psy9398
Match_columns 154
No_of_seqs 218 out of 1643
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 18:08:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9398.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9398hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09216 rplM 50S ribosomal pr 100.0 4.2E-33 9.1E-38 209.6 5.4 96 1-98 14-137 (144)
2 TIGR01066 rplM_bact ribosomal 100.0 4.3E-33 9.3E-38 208.8 5.0 96 1-98 12-135 (140)
3 PLN00205 ribisomal protein L13 100.0 1.5E-32 3.3E-37 213.9 5.3 107 1-109 16-150 (191)
4 CHL00159 rpl13 ribosomal prote 100.0 1.5E-32 3.2E-37 206.2 4.8 96 1-98 15-138 (143)
5 cd00392 Ribosomal_L13 Ribosoma 100.0 1.7E-32 3.6E-37 199.4 4.9 86 2-89 1-114 (114)
6 PF00572 Ribosomal_L13: Riboso 100.0 6.6E-32 1.4E-36 199.9 2.8 89 2-92 1-117 (128)
7 COG0103 RpsI Ribosomal protein 100.0 5.2E-31 1.1E-35 193.5 7.1 84 71-154 7-90 (130)
8 COG0102 RplM Ribosomal protein 100.0 9.7E-31 2.1E-35 196.1 5.3 89 1-91 14-131 (148)
9 PRK00132 rpsI 30S ribosomal pr 100.0 2.3E-30 5.1E-35 191.8 7.0 84 71-154 7-90 (130)
10 CHL00079 rps9 ribosomal protei 100.0 7.1E-30 1.5E-34 189.2 7.2 84 71-154 6-90 (130)
11 PF00380 Ribosomal_S9: Ribosom 100.0 5.4E-30 1.2E-34 188.0 3.2 81 74-154 1-81 (121)
12 KOG3203|consensus 100.0 9.6E-30 2.1E-34 190.8 3.4 88 1-90 22-137 (165)
13 PRK00474 rps9p 30S ribosomal p 100.0 6E-29 1.3E-33 185.1 6.8 83 71-154 6-90 (134)
14 PTZ00086 40S ribosomal protein 100.0 7.4E-29 1.6E-33 187.1 7.0 83 71-154 12-96 (147)
15 TIGR03627 arch_S9P archaeal ri 100.0 9.8E-29 2.1E-33 183.2 7.0 82 72-154 4-86 (130)
16 PLN00210 40S ribosomal protein 99.9 3.3E-28 7.1E-33 182.5 7.4 83 71-154 6-90 (141)
17 PTZ00068 60S ribosomal protein 99.9 1.5E-25 3.3E-30 176.4 4.6 143 1-150 4-165 (202)
18 KOG1697|consensus 99.9 2.1E-24 4.6E-29 173.5 7.9 97 58-154 132-235 (275)
19 PRK06394 rpl13p 50S ribosomal 99.9 1.8E-23 3.9E-28 157.8 6.2 96 3-100 5-118 (146)
20 TIGR01077 L13_A_E ribosomal pr 99.9 1.4E-22 2.9E-27 152.4 5.5 100 3-105 1-116 (142)
21 KOG1753|consensus 99.7 1.5E-17 3.2E-22 122.2 6.1 82 72-154 11-94 (145)
22 KOG3204|consensus 99.5 1.4E-14 3.1E-19 112.9 1.9 143 3-149 8-159 (197)
23 KOG0058|consensus 89.2 0.21 4.6E-06 46.5 1.7 78 73-153 503-621 (716)
24 TIGR02868 CydC thiol reductant 86.3 0.64 1.4E-05 41.1 3.0 81 72-153 369-487 (529)
25 PTZ00265 multidrug resistance 83.8 2.6 5.6E-05 42.5 6.1 78 74-153 1261-1375(1466)
26 PF02601 Exonuc_VII_L: Exonucl 81.4 2.5 5.4E-05 35.2 4.4 65 76-153 37-105 (319)
27 PRK11174 cysteine/glutathione 78.7 1.9 4.1E-05 38.7 3.0 81 72-153 384-502 (588)
28 TIGR00958 3a01208 Conjugate Tr 77.8 2 4.4E-05 39.7 3.0 81 72-153 515-634 (711)
29 TIGR01193 bacteriocin_ABC ABC- 77.1 2.1 4.5E-05 39.4 2.8 81 72-153 508-628 (708)
30 TIGR03375 type_I_sec_LssB type 75.4 3.4 7.3E-05 38.0 3.7 80 72-153 499-618 (694)
31 TIGR03796 NHPM_micro_ABC1 NHPM 75.0 3 6.5E-05 38.4 3.3 81 72-153 513-632 (710)
32 COG1132 MdlB ABC-type multidru 74.9 3.4 7.4E-05 37.0 3.5 80 72-153 363-482 (567)
33 PRK10790 putative multidrug tr 74.8 4.3 9.3E-05 36.5 4.2 81 72-153 375-493 (592)
34 KOG3288|consensus 71.3 4 8.8E-05 33.9 2.8 29 122-150 272-300 (307)
35 COG4608 AppF ABC-type oligopep 69.3 5.8 0.00012 33.0 3.4 71 73-152 48-125 (268)
36 TIGR03797 NHPM_micro_ABC2 NHPM 69.3 5.9 0.00013 36.4 3.8 81 72-153 487-605 (686)
37 COG2884 FtsE Predicted ATPase 67.3 5.7 0.00012 32.0 2.9 76 73-153 37-154 (223)
38 PF13541 ChlI: Subunit ChlI of 65.7 18 0.00039 26.3 5.0 67 84-153 4-71 (121)
39 COG1126 GlnQ ABC-type polar am 65.6 5.2 0.00011 32.7 2.3 27 73-99 37-66 (240)
40 COG4988 CydD ABC-type transpor 65.3 12 0.00025 34.3 4.8 80 72-153 355-473 (559)
41 PRK11176 lipid transporter ATP 64.6 7.6 0.00016 34.7 3.5 81 72-153 377-497 (582)
42 PRK00286 xseA exodeoxyribonucl 64.4 12 0.00026 32.6 4.6 33 107-140 176-208 (438)
43 cd03214 ABC_Iron-Siderophores_ 64.1 5.7 0.00012 30.0 2.3 76 72-153 33-114 (180)
44 TIGR02203 MsbA_lipidA lipid A 61.1 6.9 0.00015 34.8 2.6 81 72-153 366-486 (571)
45 PLN03130 ABC transporter C fam 59.6 14 0.0003 37.9 4.6 80 72-153 1273-1391(1622)
46 TIGR01846 type_I_sec_HlyB type 59.1 12 0.00026 34.4 3.9 81 72-153 491-610 (694)
47 PRK13657 cyclic beta-1,2-gluca 58.1 11 0.00025 33.8 3.4 81 72-153 369-488 (588)
48 PF12396 DUF3659: Protein of u 56.5 3.2 7E-05 27.1 -0.3 25 3-27 14-38 (64)
49 TIGR01842 type_I_sec_PrtD type 55.8 9.2 0.0002 34.1 2.4 30 72-101 352-384 (544)
50 COG1124 DppF ABC-type dipeptid 55.2 3.3 7.1E-05 34.2 -0.5 47 72-118 41-111 (252)
51 TIGR02857 CydD thiol reductant 53.3 18 0.00038 32.0 3.8 81 72-153 356-475 (529)
52 COG1570 XseA Exonuclease VII, 52.5 16 0.00034 32.6 3.3 62 63-140 148-209 (440)
53 TIGR01192 chvA glucan exporter 52.1 12 0.00026 33.8 2.6 81 72-153 369-488 (585)
54 cd03222 ABC_RNaseL_inhibitor T 51.4 11 0.00023 29.0 1.9 29 72-100 33-64 (177)
55 PLN03232 ABC transporter C fam 50.5 24 0.00053 35.8 4.6 80 72-153 1270-1388(1495)
56 cd03216 ABC_Carb_Monos_I This 48.8 6.3 0.00014 29.4 0.2 30 72-101 34-66 (163)
57 TIGR00957 MRP_assoc_pro multi 48.5 19 0.00041 36.6 3.6 80 72-153 1320-1438(1522)
58 TIGR00237 xseA exodeoxyribonuc 48.1 23 0.00049 31.2 3.6 45 108-152 171-216 (432)
59 COG3839 MalK ABC-type sugar tr 48.1 12 0.00026 32.1 1.8 47 73-119 38-103 (338)
60 PRK10787 DNA-binding ATP-depen 47.1 45 0.00097 31.7 5.6 69 83-152 615-689 (784)
61 PRK10789 putative multidrug tr 47.1 23 0.00051 31.8 3.6 81 72-153 349-468 (569)
62 cd03246 ABCC_Protease_Secretio 41.6 19 0.00041 26.9 1.9 30 72-101 36-68 (173)
63 cd03247 ABCC_cytochrome_bd The 41.4 15 0.00033 27.5 1.3 29 73-101 37-68 (178)
64 TIGR01271 CFTR_protein cystic 41.3 38 0.00082 34.5 4.4 80 72-153 1253-1370(1490)
65 PF00475 IGPD: Imidazoleglycer 39.7 1.7E+02 0.0036 22.2 6.8 41 108-151 103-144 (145)
66 PF03755 YicC_N: YicC-like fam 39.6 1.3E+02 0.0029 22.5 6.3 73 80-152 7-88 (159)
67 COG0689 Rph RNase PH [Translat 39.0 35 0.00076 27.8 3.1 85 50-151 56-145 (230)
68 COG4167 SapF ABC-type antimicr 36.3 22 0.00048 28.8 1.6 29 72-100 47-78 (267)
69 cd03215 ABC_Carb_Monos_II This 35.1 58 0.0013 24.4 3.7 30 72-101 34-66 (182)
70 cd03232 ABC_PDR_domain2 The pl 35.0 63 0.0014 24.5 3.9 28 72-99 41-73 (192)
71 PRK15317 alkyl hydroperoxide r 34.0 55 0.0012 29.1 3.8 57 88-146 169-231 (517)
72 KOG3974|consensus 34.0 27 0.00058 29.4 1.7 16 16-31 121-136 (306)
73 cd03221 ABCF_EF-3 ABCF_EF-3 E 33.4 37 0.0008 24.7 2.3 25 73-97 35-62 (144)
74 KOG0055|consensus 33.2 78 0.0017 31.9 4.9 65 87-153 1042-1143(1228)
75 TIGR03140 AhpF alkyl hydropero 32.7 60 0.0013 28.8 3.9 57 88-147 170-233 (515)
76 PF10865 DUF2703: Domain of un 30.9 24 0.00052 25.8 0.9 18 87-104 60-77 (120)
77 COG4604 CeuD ABC-type enteroch 30.1 38 0.00083 27.6 2.0 42 86-132 52-93 (252)
78 PRK03759 isopentenyl-diphospha 27.4 60 0.0013 24.7 2.6 29 1-29 7-35 (184)
79 PF12637 TSCPD: TSCPD domain; 27.3 80 0.0017 21.8 3.0 28 125-152 24-52 (95)
80 COG1750 Archaeal serine protea 27.2 1.5E+02 0.0033 27.4 5.5 59 76-134 49-108 (579)
81 cd03230 ABC_DR_subfamily_A Thi 26.0 83 0.0018 23.3 3.1 29 73-101 35-66 (173)
82 PF14419 SPOUT_MTase_2: AF2226 25.8 1.4E+02 0.0029 23.3 4.2 42 3-44 97-138 (173)
83 TIGR03265 PhnT2 putative 2-ami 23.6 60 0.0013 27.6 2.2 27 73-99 39-68 (353)
84 cd03223 ABCD_peroxisomal_ALDP 23.5 45 0.00098 24.8 1.3 70 73-153 36-108 (166)
85 TIGR00416 sms DNA repair prote 23.2 1.6E+02 0.0034 26.1 4.8 45 108-153 336-383 (454)
86 PF13605 DUF4141: Domain of un 22.9 35 0.00075 21.7 0.4 13 1-13 21-33 (55)
87 TIGR02903 spore_lon_C ATP-depe 22.8 2.4E+02 0.0052 26.0 6.0 46 106-152 487-537 (615)
88 TIGR00292 thiazole biosynthesi 22.3 75 0.0016 25.7 2.4 21 3-24 161-181 (254)
89 PF01808 AICARFT_IMPCHas: AICA 21.8 61 0.0013 27.6 1.8 43 107-150 266-315 (315)
90 TIGR00763 lon ATP-dependent pr 21.5 1.9E+02 0.0041 27.3 5.2 67 85-152 621-693 (775)
91 PTZ00367 squalene epoxidase; P 21.0 1.1E+02 0.0023 28.0 3.3 39 108-146 15-53 (567)
No 1
>PRK09216 rplM 50S ribosomal protein L13; Reviewed
Probab=99.98 E-value=4.2e-33 Score=209.61 Aligned_cols=96 Identities=40% Similarity=0.726 Sum_probs=86.8
Q ss_pred CeEEEeCCCCchhhHHHHHHHHHhCCCceEEeeecc----------------------------ccCCCCeeeecccccc
Q psy9398 1 MWFLIDAKNKILGRVASKIAVYLRGKHKTEYTPHID----------------------------TGYPGGIRKINFLKMQ 52 (154)
Q Consensus 1 ~w~viDa~~~~lGRlAs~vA~~L~Gk~k~~~~~~~d----------------------------~gy~gg~k~~~~~~~~ 52 (154)
+||||||+||+||||||+||++|+|||||+|+|+.| +|||||++++++++++
T Consensus 14 ~W~viDA~~~~lGRlAs~IAk~L~GKhKp~y~p~~d~Gd~VvViNa~ki~~tG~k~~~k~y~~htg~pGglk~~~~~~~~ 93 (144)
T PRK09216 14 KWYVIDAEGKVLGRLASEVASILRGKHKPTFTPHVDTGDFVIVINAEKVKLTGKKLTDKIYYRHSGYPGGLKEITFGELL 93 (144)
T ss_pred CEEEEeCCCCchHHHHHHHHHHHhccCCCCcCCCCCCCCEEEEEeCceeEEcCchHhheeeEEecccCCCCEEecHHHHh
Confidence 599999999999999999999999999999999997 4799999999999999
Q ss_pred ccCchhHHHHhhhhhhcccCccccccccceeeeecCcceEEEcccc
Q psy9398 53 EDFPGRVLQKAVKVVNYKYGTGRRKSAIARVFIKIGSGKMTINRIP 98 (154)
Q Consensus 53 ~r~P~~Il~raV~gmlp~~~~grrK~a~aRv~i~~G~g~i~vN~~~ 98 (154)
+++|++|+++||+||||++ -+++.++.|+++|+|+.......+|
T Consensus 94 ~r~P~~il~~aVrgMLPkn--~lgr~~~~rLkvy~G~~hp~~~q~p 137 (144)
T PRK09216 94 AKKPERVIEKAVKGMLPKN--PLGRAMFKKLKVYAGAEHPHAAQQP 137 (144)
T ss_pred hhCHHHHHHHHHHhcCCCC--ccHHHHHhCcEEeCCCCCCccccCC
Confidence 9999999999999999975 4557789999999998755544444
No 2
>TIGR01066 rplM_bact ribosomal protein L13, bacterial type. This model distinguishes ribosomal protein L13 of bacteria and organelles from its eukarytotic and archaeal counterparts.
Probab=99.97 E-value=4.3e-33 Score=208.77 Aligned_cols=96 Identities=41% Similarity=0.682 Sum_probs=86.3
Q ss_pred CeEEEeCCCCchhhHHHHHHHHHhCCCceEEeeecc----------------------------ccCCCCeeeecccccc
Q psy9398 1 MWFLIDAKNKILGRVASKIAVYLRGKHKTEYTPHID----------------------------TGYPGGIRKINFLKMQ 52 (154)
Q Consensus 1 ~w~viDa~~~~lGRlAs~vA~~L~Gk~k~~~~~~~d----------------------------~gy~gg~k~~~~~~~~ 52 (154)
.||||||+||+||||||.||++|+|||||+|+|+.| +|||||++++++++++
T Consensus 12 ~W~viDA~~~~lGRLAs~iAk~L~GKhKp~y~p~~d~Gd~VvViNa~ki~~tG~k~~~k~y~~htg~pgg~k~~~~~~~~ 91 (140)
T TIGR01066 12 KWYVVDAAGKTLGRLASEVARLLRGKHKPTYTPHVDCGDYVIVINAEKVRLTGKKLEQKVYYRHSGYPGGLKSRTFEEMI 91 (140)
T ss_pred cEEEEeCCCCchHHHHHHHHHHHhccCCCccCCCccCCCEEEEEeccEEEEeCchhhceeeEEEcccCCccccccHHHhh
Confidence 599999999999999999999999999999999997 4799999999999999
Q ss_pred ccCchhHHHHhhhhhhcccCccccccccceeeeecCcceEEEcccc
Q psy9398 53 EDFPGRVLQKAVKVVNYKYGTGRRKSAIARVFIKIGSGKMTINRIP 98 (154)
Q Consensus 53 ~r~P~~Il~raV~gmlp~~~~grrK~a~aRv~i~~G~g~i~vN~~~ 98 (154)
+++|++|+++||+||||++ -+++.++.|+++|+|+.......+|
T Consensus 92 ~r~P~~ii~~aVrGMLPkn--~lgr~~l~rLkvy~G~~hp~~~q~p 135 (140)
T TIGR01066 92 ARKPERVLEHAVKGMLPKN--RLGRKLFKKLKVYAGSEHPHEAQKP 135 (140)
T ss_pred hcCHHHHHHHHHHhcCCCC--ccHHHHHhCeEEeCCCCCChhhcCC
Confidence 9999999999999999975 4557789999999998654444443
No 3
>PLN00205 ribisomal protein L13 family protein; Provisional
Probab=99.97 E-value=1.5e-32 Score=213.88 Aligned_cols=107 Identities=27% Similarity=0.355 Sum_probs=93.3
Q ss_pred CeEEEeCCCCchhhHHHHHHHHHhCCCceEEeeecc----------------------------ccCCCCeeeecccccc
Q psy9398 1 MWFLIDAKNKILGRVASKIAVYLRGKHKTEYTPHID----------------------------TGYPGGIRKINFLKMQ 52 (154)
Q Consensus 1 ~w~viDa~~~~lGRlAs~vA~~L~Gk~k~~~~~~~d----------------------------~gy~gg~k~~~~~~~~ 52 (154)
.||||||+||+||||||+||++|+|||||+|+|+.| ||||||++++++++++
T Consensus 16 ~W~VIDA~~~iLGRLAS~IAk~L~GKhKP~ytP~~D~GD~VVVINAekI~lTG~K~~~K~Y~~htgypGglk~~~~~~~~ 95 (191)
T PLN00205 16 RWRVFDAKGQVLGRLASQISTVLQGKDKPTYAPNRDDGDICIVLNAKDISVTGRKLTDKFYRWHTGYIGHLKERSLKDQM 95 (191)
T ss_pred cEEEEeCCCCchHHHHHHHHHHHhccCCCCcCCCcCCCCEEEEEeccEEEEeCChhhcceEEEecCCCCCcccccHHHHh
Confidence 599999999999999999999999999999999997 4799999999999999
Q ss_pred ccCchhHHHHhhhhhhcccCccccccccceeeeecCcceEEEcccccccccCchHHH
Q psy9398 53 EDFPGRVLQKAVKVVNYKYGTGRRKSAIARVFIKIGSGKMTINRIPADKYFSRKTGL 109 (154)
Q Consensus 53 ~r~P~~Il~raV~gmlp~~~~grrK~a~aRv~i~~G~g~i~vN~~~~~~yf~~~~~~ 109 (154)
+++|++||++||+||||+++.+++ .+.|+++|+|+...+-..+|...=+|....+
T Consensus 96 ~r~P~~Il~kAVrGMLPkn~lr~~--~~krLkVY~G~~hp~~~q~p~~~~~p~~~~~ 150 (191)
T PLN00205 96 AKDPTEVIRKAVLRMLPRNRLRDD--RDRKLRIFAGSEHPFGDKPLEPFVMPPRQVR 150 (191)
T ss_pred ccCHHHHHHHHHHhcCCCCchHHH--HHhCCEEECCCCCChhccCCeEecCChHHhh
Confidence 999999999999999998765543 6899999999987776666654335654444
No 4
>CHL00159 rpl13 ribosomal protein L13; Validated
Probab=99.97 E-value=1.5e-32 Score=206.25 Aligned_cols=96 Identities=36% Similarity=0.669 Sum_probs=85.8
Q ss_pred CeEEEeCCCCchhhHHHHHHHHHhCCCceEEeeecc----------------------------ccCCCCeeeecccccc
Q psy9398 1 MWFLIDAKNKILGRVASKIAVYLRGKHKTEYTPHID----------------------------TGYPGGIRKINFLKMQ 52 (154)
Q Consensus 1 ~w~viDa~~~~lGRlAs~vA~~L~Gk~k~~~~~~~d----------------------------~gy~gg~k~~~~~~~~ 52 (154)
.|+||||+||+||||||.||++|+|||||+|+|+.| +|||||+++.++++++
T Consensus 15 ~W~viDA~~~~lGRlAs~iA~~L~GKhKp~ytP~~d~Gd~VVViNa~kv~~TG~K~~~K~y~~htg~pGg~k~~~~~~~~ 94 (143)
T CHL00159 15 KWYIIDAKDQTLGRLATKIASLLRGKNKPSYHPSVDTGDYVIVINAEKIKVTGNKTSQKFYVRHSGRPGGLKIETFEELQ 94 (143)
T ss_pred CEEEEeCCCCchHHHHHHHHHHHhccCCCCcCCCcCCCCEEEEEecceeEEeCchhhheEEEecCCCCCCcccccHHHHh
Confidence 599999999999999999999999999999999997 4799999999999999
Q ss_pred ccCchhHHHHhhhhhhcccCccccccccceeeeecCcceEEEcccc
Q psy9398 53 EDFPGRVLQKAVKVVNYKYGTGRRKSAIARVFIKIGSGKMTINRIP 98 (154)
Q Consensus 53 ~r~P~~Il~raV~gmlp~~~~grrK~a~aRv~i~~G~g~i~vN~~~ 98 (154)
+++|++|+++||+||||++. +++.++.|+++|+|+.....-.+|
T Consensus 95 ~r~P~~il~~aV~gMLPkn~--lgr~~~~rLkvy~G~~hph~aq~p 138 (143)
T CHL00159 95 NRLPNRIIEKAVKGMLPKGP--LGRKLFTKLKVYKGESHPHVAQKP 138 (143)
T ss_pred hcCHHHHHHHHHHhcCCCCh--hHHHHHhCCEEeCCCCCCccccCC
Confidence 99999999999999999764 456689999999998644433333
No 5
>cd00392 Ribosomal_L13 Ribosomal protein L13. Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early folding intermediate of 23S rRNA in the assembly of the large subunit. L13 is situated on the bottom of the large subunit, near the polypeptide exit site. It interacts with proteins L3 and L6, and forms an extensive network of interactions with 23S rRNA. L13 has been identified as a homolog of the human breast basic conserved protein 1 (BBC1), a protein identified through its increased expression in breast cancer. L13 expression is also upregulated in a variety of human gastrointestinal cancers, suggesting it may play a role in the etiology of a variety of human malignancies.
Probab=99.97 E-value=1.7e-32 Score=199.45 Aligned_cols=86 Identities=43% Similarity=0.739 Sum_probs=81.1
Q ss_pred eEEEeCCCCchhhHHHHHHHHHhCCCceEEeeecc----------------------------ccCCCCeeeeccccccc
Q psy9398 2 WFLIDAKNKILGRVASKIAVYLRGKHKTEYTPHID----------------------------TGYPGGIRKINFLKMQE 53 (154)
Q Consensus 2 w~viDa~~~~lGRlAs~vA~~L~Gk~k~~~~~~~d----------------------------~gy~gg~k~~~~~~~~~ 53 (154)
|+||||+||+||||||.||++|+|||||+|+|+.| +||||++++.+++++++
T Consensus 1 w~viDA~~~~lGRlAs~iA~~L~gKhKp~y~p~~d~Gd~VvViNa~~i~~tG~k~~~k~y~~~~~~~g~~~~~~~~~~~~ 80 (114)
T cd00392 1 WHVIDAKGQVLGRLASKVAKLLLGKHKPTYTPHVDCGDYVVVVNAEKIVITGKKWRQKVYYRHTGYPGGLKNPTAGPLHP 80 (114)
T ss_pred CEEEeCCCCchHHHHHHHHHHHcCCCCCCcCCCccCCCEEEEEeccEEEEeCchhhccceEEeccCCCCCccCCcchhhh
Confidence 99999999999999999999999999999999997 47999999999999999
Q ss_pred cCchhHHHHhhhhhhcccCccccccccceeeeecCc
Q psy9398 54 DFPGRVLQKAVKVVNYKYGTGRRKSAIARVFIKIGS 89 (154)
Q Consensus 54 r~P~~Il~raV~gmlp~~~~grrK~a~aRv~i~~G~ 89 (154)
++|++|+++||+||||++ -+++.++.|+++|+|+
T Consensus 81 ~~P~~il~~aV~gMLPkn--~~g~~~l~rLkvy~g~ 114 (114)
T cd00392 81 RAPERILKRAVRGMLPKN--KLGRAALKRLKVYEGA 114 (114)
T ss_pred hCHHHHHHHHHHhcCCCC--hhHHHHHhCcEEeCCC
Confidence 999999999999999965 5668899999999984
No 6
>PF00572 Ribosomal_L13: Ribosomal protein L13; InterPro: IPR005822 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L13 is one of the proteins from the large ribosomal subunit []. In Escherichia coli, L13 is known to be one of the early assembly proteins of the 50S ribosomal subunit.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 4A17_I 4A1E_I 4A1A_I 4A1C_I 3D5B_N 3MS1_J 1VSP_H 3PYT_J 3PYO_J 3PYV_J ....
Probab=99.97 E-value=6.6e-32 Score=199.93 Aligned_cols=89 Identities=44% Similarity=0.725 Sum_probs=83.3
Q ss_pred eEEEeCCCCchhhHHHHHHHHHhCCCceEEeeecc----------------------------ccCCCCeeeeccccccc
Q psy9398 2 WFLIDAKNKILGRVASKIAVYLRGKHKTEYTPHID----------------------------TGYPGGIRKINFLKMQE 53 (154)
Q Consensus 2 w~viDa~~~~lGRlAs~vA~~L~Gk~k~~~~~~~d----------------------------~gy~gg~k~~~~~~~~~ 53 (154)
|+||||+||+||||||+||++|+|||||+|+|+.| +||||+++..+++++++
T Consensus 1 W~viDA~~~~lGRLAs~iAk~L~GKhk~~y~p~~d~Gd~VvViNae~i~~tG~k~~~k~y~~h~~~~g~~~~~~~~~~~~ 80 (128)
T PF00572_consen 1 WYVIDAKGQILGRLASKIAKLLLGKHKPTYTPNVDCGDHVVVINAEKIVLTGKKWRQKVYYRHTGYPGGLKNPTAKGLHE 80 (128)
T ss_dssp EEEEETTTBBHHHHHHHHHHHHCTTSSTSSBTTSSTTEEEEEECGGGBEESSHHHHHHHHHHEHSSSTSCEEEECHHHHC
T ss_pred CEEEeCCCCchHHHHHHHHHHHhCCCCCccCcCccCCCEEEEEcCeeeEecCCeecceEEEeecccchhhcccchhhhhh
Confidence 99999999999999999999999999999999986 47999999999999999
Q ss_pred cCchhHHHHhhhhhhcccCccccccccceeeeecCcceE
Q psy9398 54 DFPGRVLQKAVKVVNYKYGTGRRKSAIARVFIKIGSGKM 92 (154)
Q Consensus 54 r~P~~Il~raV~gmlp~~~~grrK~a~aRv~i~~G~g~i 92 (154)
++|++|+++||+||||++ -+|+.++.|+++|+|+...
T Consensus 81 ~~P~~i~~~aVrgMLP~n--~~g~~~l~rL~vy~g~~hp 117 (128)
T PF00572_consen 81 KDPSRILKRAVRGMLPKN--KLGREALKRLKVYPGEPHP 117 (128)
T ss_dssp SSHHHHHHHHHHTTSTTS--HHHHHHHTTEEEESSSSCS
T ss_pred cCHHHHHHHHHHHHCCCC--hhhhHHhhceEEECCCCCC
Confidence 999999999999999984 5678899999999998644
No 7
>COG0103 RpsI Ribosomal protein S9 [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=5.2e-31 Score=193.48 Aligned_cols=84 Identities=54% Similarity=0.814 Sum_probs=81.8
Q ss_pred cCccccccccceeeeecCcceEEEcccccccccCchHHHHHHhhHHHhhccCCceeeEEEeecCcccchhhHHHHHHHHH
Q psy9398 71 YGTGRRKSAIARVFIKIGSGKMTINRIPADKYFSRKTGLMVISQPLKLTKHTKTFDIKINVRGGGESGQYGAVRHGITRA 150 (154)
Q Consensus 71 ~~~grrK~a~aRv~i~~G~g~i~vN~~~~~~yf~~~~~~~~i~~Pl~~~~~~~~~di~~~v~GGG~~gQa~Air~aiara 150 (154)
+.+||||+|.|||++.+|+|+|+|||+|+++||+++.+++++++||.+++..++|||.++|+|||+||||+|||||||||
T Consensus 7 ~~tGkRK~AvArv~l~~g~G~i~vNg~~~e~yf~~e~~r~~i~~Pl~l~~~~~~~Di~v~V~GGG~~GQA~AiR~gIaRA 86 (130)
T COG0103 7 YTTGKRKSAVARVRLVPGKGKITVNGRPLELYFPRETLRMKIMQPLLLTGTVGKFDIDVTVKGGGISGQAGAIRHGIARA 86 (130)
T ss_pred eeeccccceEEEEEEEcCCcEEEECCcCHHHhcchHHHHHHHhhhHHHhCccccccEEEEEecCCchHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcC
Q psy9398 151 FNQL 154 (154)
Q Consensus 151 l~~~ 154 (154)
|++|
T Consensus 87 L~~~ 90 (130)
T COG0103 87 LVEY 90 (130)
T ss_pred HHHH
Confidence 9975
No 8
>COG0102 RplM Ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=9.7e-31 Score=196.14 Aligned_cols=89 Identities=40% Similarity=0.715 Sum_probs=80.3
Q ss_pred CeEEEeCCCCchhhHHHHHHHHHhCCCceEEeeecc----------------------------ccCCCCeeeeccc-cc
Q psy9398 1 MWFLIDAKNKILGRVASKIAVYLRGKHKTEYTPHID----------------------------TGYPGGIRKINFL-KM 51 (154)
Q Consensus 1 ~w~viDa~~~~lGRlAs~vA~~L~Gk~k~~~~~~~d----------------------------~gy~gg~k~~~~~-~~ 51 (154)
.|+||||+|++||||||.||+.|+|||||+|+||.| +|||||+++.+++ ++
T Consensus 14 ~w~vIDA~g~vLGRLAs~VA~~Lrgkhkp~ytP~~d~Gd~ViVINAeKv~iTG~K~~~k~yy~hs~~~gglk~~t~~~~~ 93 (148)
T COG0102 14 KWYVIDAEGKVLGRLASEVAKRLRGKHKPTYTPHVDTGDYVIVINAEKVVITGKKLTDKKYYRHSGYPGGLKNPTRGGPL 93 (148)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHhcCCCCCcCcCcCCCCEEEEEeceeeEEecccccceEEEEeeccCCccccccccccc
Confidence 499999999999999999999999999999999987 4799999999985 55
Q ss_pred cccCchhHHHHhhhhhhcccCccccccccceeeeecCcce
Q psy9398 52 QEDFPGRVLQKAVKVVNYKYGTGRRKSAIARVFIKIGSGK 91 (154)
Q Consensus 52 ~~r~P~~Il~raV~gmlp~~~~grrK~a~aRv~i~~G~g~ 91 (154)
++|.|++||++||+||||+++ +++.++.++++|.|++.
T Consensus 94 ~~r~P~ri~~~AVrGMLPk~~--lGr~~~krLkVy~G~~h 131 (148)
T COG0102 94 APRRPERILERAVRGMLPKNP--LGRAALKRLKVYAGIPH 131 (148)
T ss_pred ccCCHHHHHHHHHhccCCCCh--hHHHHHhCceEecCCCC
Confidence 569999999999999999865 45668999999999863
No 9
>PRK00132 rpsI 30S ribosomal protein S9; Reviewed
Probab=99.96 E-value=2.3e-30 Score=191.83 Aligned_cols=84 Identities=55% Similarity=0.884 Sum_probs=81.6
Q ss_pred cCccccccccceeeeecCcceEEEcccccccccCchHHHHHHhhHHHhhccCCceeeEEEeecCcccchhhHHHHHHHHH
Q psy9398 71 YGTGRRKSAIARVFIKIGSGKMTINRIPADKYFSRKTGLMVISQPLKLTKHTKTFDIKINVRGGGESGQYGAVRHGITRA 150 (154)
Q Consensus 71 ~~~grrK~a~aRv~i~~G~g~i~vN~~~~~~yf~~~~~~~~i~~Pl~~~~~~~~~di~~~v~GGG~~gQa~Air~aiara 150 (154)
+.+|+||+|.|+|++.+|+|+|+|||+|+++||++..+++++++||.+++.+++|||+|+|+|||+||||+|||+|||||
T Consensus 7 ~~~GrRK~a~A~v~l~~G~G~i~INg~~~~~yf~~~~~r~~i~~Pl~~~~~~~~~Di~i~V~GGG~sgQa~Air~aiara 86 (130)
T PRK00132 7 YGTGRRKTAVARVRLKPGSGKITVNGRDLEEYFPRETLRMVVRQPLELTETEGKFDVYVTVKGGGISGQAGAIRHGIARA 86 (130)
T ss_pred EEEeeCCCeEEEEEEEcCccEEEECCEeHHHHcCCHHHHHHHHHHHHHhCccCceeEEEEEEcCCHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcC
Q psy9398 151 FNQL 154 (154)
Q Consensus 151 l~~~ 154 (154)
|++|
T Consensus 87 Lv~~ 90 (130)
T PRK00132 87 LLEY 90 (130)
T ss_pred HHHH
Confidence 9975
No 10
>CHL00079 rps9 ribosomal protein S9
Probab=99.96 E-value=7.1e-30 Score=189.17 Aligned_cols=84 Identities=43% Similarity=0.706 Sum_probs=80.1
Q ss_pred cCccccccccceeeeecCcceEEEcccccccccC-chHHHHHHhhHHHhhccCCceeeEEEeecCcccchhhHHHHHHHH
Q psy9398 71 YGTGRRKSAIARVFIKIGSGKMTINRIPADKYFS-RKTGLMVISQPLKLTKHTKTFDIKINVRGGGESGQYGAVRHGITR 149 (154)
Q Consensus 71 ~~~grrK~a~aRv~i~~G~g~i~vN~~~~~~yf~-~~~~~~~i~~Pl~~~~~~~~~di~~~v~GGG~~gQa~Air~aiar 149 (154)
..+|+||+|.|+|++.+|+|+|+|||+|+++||+ +..+++.+++||.+++.+++|||+|+|+|||+||||+||||||||
T Consensus 6 ~~~GrRKta~Arv~l~~G~G~i~INg~~~~~yf~~~~~~~~~v~~Pl~~~~~~~~~Di~i~V~GGG~sgQa~Air~aIar 85 (130)
T CHL00079 6 IGTGRRKTAVAQVRLVPGSGEIIINGKPAEEYLQYNPNYLNAIKAPLKLLGLENKYDIIVKVKGGGLTGQAEAIRLGLAR 85 (130)
T ss_pred EEEeeCCCeEEEEEEEcCCcEEEECCCcHHHHCCcCHHHHHHHHHHHHHhCcCCceeEEEEEEcCChhHHHHHHHHHHHH
Confidence 3679999999999999999999999999999998 577889999999999999999999999999999999999999999
Q ss_pred HHhcC
Q psy9398 150 AFNQL 154 (154)
Q Consensus 150 al~~~ 154 (154)
||++|
T Consensus 86 aLv~~ 90 (130)
T CHL00079 86 ALCKI 90 (130)
T ss_pred HHHHH
Confidence 99975
No 11
>PF00380 Ribosomal_S9: Ribosomal protein S9/S16; InterPro: IPR000754 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S9 is one of the proteins from the small ribosomal subunit. It belongs to the S9P family of ribosomal proteins which, on the basis of sequence similarities [, ], groups bacterial; algal chloroplast; cyanelle and archaeal S9 proteins; and mammalian; plant; and yeast mitochondrial ribosomal S9 proteins. These proteins adopt a beta-alpha-beta fold similar to that found in numerous RNA/DNA-binding proteins, as well as in kinases from the GHMP kinase family [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V46_I 3T1H_I 3MR8_I 3F1G_I 3D5C_I 3D5A_I 2WDG_I 3MS0_I 2WDM_I 2J02_I ....
Probab=99.96 E-value=5.4e-30 Score=187.98 Aligned_cols=81 Identities=49% Similarity=0.735 Sum_probs=79.0
Q ss_pred cccccccceeeeecCcceEEEcccccccccCchHHHHHHhhHHHhhccCCceeeEEEeecCcccchhhHHHHHHHHHHhc
Q psy9398 74 GRRKSAIARVFIKIGSGKMTINRIPADKYFSRKTGLMVISQPLKLTKHTKTFDIKINVRGGGESGQYGAVRHGITRAFNQ 153 (154)
Q Consensus 74 grrK~a~aRv~i~~G~g~i~vN~~~~~~yf~~~~~~~~i~~Pl~~~~~~~~~di~~~v~GGG~~gQa~Air~aiaral~~ 153 (154)
|+||+|.|+|++.+|+|+|.|||+|+++||++..+++++++||.+++.+++|||+++|+|||.||||+|||+||||||++
T Consensus 1 GkRK~a~A~v~l~~G~G~i~INg~~l~~yf~~~~~r~~il~Pl~~~~~~~~~di~~~V~GGG~~gQa~Air~aiaraL~~ 80 (121)
T PF00380_consen 1 GKRKTAIARVWLKPGSGKIRINGKPLEEYFPNPYLREKILEPLELTGTLGKFDIFANVKGGGISGQAGAIRLAIARALVK 80 (121)
T ss_dssp EEETTEEEEEEEEESSSEEEETTSEHHHHSSSTTTGCCTTHHHHCTTTSTSEEEEEEEESSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEEEEeCceEEEECCEEHHHhcCcHhHHHHHHHHHHHhCcCCeeeEEEEEecCcEeeehHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q psy9398 154 L 154 (154)
Q Consensus 154 ~ 154 (154)
|
T Consensus 81 ~ 81 (121)
T PF00380_consen 81 F 81 (121)
T ss_dssp H
T ss_pred H
Confidence 4
No 12
>KOG3203|consensus
Probab=99.95 E-value=9.6e-30 Score=190.81 Aligned_cols=88 Identities=36% Similarity=0.615 Sum_probs=82.1
Q ss_pred CeEEEeCCCCchhhHHHHHHHHHhCCCceEEeeecc----------------------------ccCCCCeeeecccccc
Q psy9398 1 MWFLIDAKNKILGRVASKIAVYLRGKHKTEYTPHID----------------------------TGYPGGIRKINFLKMQ 52 (154)
Q Consensus 1 ~w~viDa~~~~lGRlAs~vA~~L~Gk~k~~~~~~~d----------------------------~gy~gg~k~~~~~~~~ 52 (154)
.||+|||++|+||||||.||.+|+|||||+|||+.| +||||+++..++++++
T Consensus 22 vW~vvDa~~q~lGrLAs~ia~~L~GkhKPiYhP~~DcGD~VVV~N~~~Ia~sG~K~~qk~Y~~HsGyPG~lk~~~~~q~~ 101 (165)
T KOG3203|consen 22 VWHVVDAKQQPLGRLASQIATTLQGKHKPIYHPSTDCGDHVVVTNCKKIAFSGKKWEQKIYRSHSGYPGGLKQTTADQLA 101 (165)
T ss_pred hheeeccccCchHHHHHHHHHHHhhccCCccCCccCCCCEEEEecchhheeccchhhhhhhhhcCCCCCchhhhHHHHHh
Confidence 499999999999999999999999999999999997 4899999999999999
Q ss_pred ccCchhHHHHhhhhhhcccCccccccccceeeeecCcc
Q psy9398 53 EDFPGRVLQKAVKVVNYKYGTGRRKSAIARVFIKIGSG 90 (154)
Q Consensus 53 ~r~P~~Il~raV~gmlp~~~~grrK~a~aRv~i~~G~g 90 (154)
.++|++|+++||+||||+|. .|++.+.|+++|+|+.
T Consensus 102 ~rdp~~Iv~~AV~gMLPkN~--Lrr~~~~rL~lf~g~e 137 (165)
T KOG3203|consen 102 DRDPCRIVRLAVYGMLPKNL--LRRRRMQRLHLFPGEE 137 (165)
T ss_pred hhCHHHHHHHHHHhhCccch--HHHHHhheeeccCCcc
Confidence 99999999999999999875 4556799999999985
No 13
>PRK00474 rps9p 30S ribosomal protein S9P; Reviewed
Probab=99.95 E-value=6e-29 Score=185.15 Aligned_cols=83 Identities=36% Similarity=0.556 Sum_probs=78.7
Q ss_pred cCccccccccceeeeecCcceEEEcccccccccCchHHHHHHhhHHHhhc--cCCceeeEEEeecCcccchhhHHHHHHH
Q psy9398 71 YGTGRRKSAIARVFIKIGSGKMTINRIPADKYFSRKTGLMVISQPLKLTK--HTKTFDIKINVRGGGESGQYGAVRHGIT 148 (154)
Q Consensus 71 ~~~grrK~a~aRv~i~~G~g~i~vN~~~~~~yf~~~~~~~~i~~Pl~~~~--~~~~~di~~~v~GGG~~gQa~Air~aia 148 (154)
..+|+||+|.|+|++.||+|+|+|||+|+++|| +..+++++++||.+++ .+++|||+|+|+|||+||||+|||+|||
T Consensus 6 ~~~GrRKta~A~v~l~~G~G~i~VNg~~~~~y~-~~~~r~~i~~Pl~~~~~~~~~~~di~i~V~GGG~sgQa~Air~aIa 84 (134)
T PRK00474 6 ITSGKRKTAIARATIREGKGRVRINGVPLELIE-PELARLKIMEPLILAGEDLRSKVDIDVNVEGGGIMGQADAARTAIA 84 (134)
T ss_pred EEEeeCCCeEEEEEEEcCceEEEECCEeHHHHC-CHHHHHHHHHHHHHhCccccCCccEEEEEEcCChhHHHHHHHHHHH
Confidence 357999999999999999999999999999875 7889999999999999 8999999999999999999999999999
Q ss_pred HHHhcC
Q psy9398 149 RAFNQL 154 (154)
Q Consensus 149 ral~~~ 154 (154)
|||++|
T Consensus 85 raL~~~ 90 (134)
T PRK00474 85 RGLVEW 90 (134)
T ss_pred HHHHHh
Confidence 999975
No 14
>PTZ00086 40S ribosomal protein S16; Provisional
Probab=99.95 E-value=7.4e-29 Score=187.07 Aligned_cols=83 Identities=29% Similarity=0.475 Sum_probs=78.7
Q ss_pred cCccccccccceeeeecCcceEEEcccccccccCchHHHHHHhhHHHhhcc--CCceeeEEEeecCcccchhhHHHHHHH
Q psy9398 71 YGTGRRKSAIARVFIKIGSGKMTINRIPADKYFSRKTGLMVISQPLKLTKH--TKTFDIKINVRGGGESGQYGAVRHGIT 148 (154)
Q Consensus 71 ~~~grrK~a~aRv~i~~G~g~i~vN~~~~~~yf~~~~~~~~i~~Pl~~~~~--~~~~di~~~v~GGG~~gQa~Air~aia 148 (154)
..+|+||+|.|+|++.+|+|+|+|||+|+++||+ ..+++++++||.+++. +++|||+|+|+|||+||||+|||+|||
T Consensus 12 ~~~GrRKtAiArv~l~~G~G~i~INg~~l~~y~~-~~~r~~i~~Pl~~~~~~~~~~~Di~i~V~GGG~sgQA~Air~aIa 90 (147)
T PTZ00086 12 QTFGKKKTAVAVALVTKGKGLIRVNGVPLDLINP-ETLRAKVFEPLLLVGKERFSRLDIRVRVRGGGQVAQAYAIRQAIA 90 (147)
T ss_pred EEeeecCCceEEEEEEcCCceEEECCcCHHHhCc-HHHHHHHHHHHHHhCcCccCceeEEEEEEcCCHHHHHHHHHHHHH
Confidence 3579999999999999999999999999999998 7789999999999975 899999999999999999999999999
Q ss_pred HHHhcC
Q psy9398 149 RAFNQL 154 (154)
Q Consensus 149 ral~~~ 154 (154)
|||++|
T Consensus 91 RAL~~~ 96 (147)
T PTZ00086 91 KGLVAY 96 (147)
T ss_pred HHHHHH
Confidence 999975
No 15
>TIGR03627 arch_S9P archaeal ribosomal protein S9P. This model describes exclusively the archaeal ribosomal protein S9P. Homologous eukaryotic and bacterial ribosomal proteins are excluded from this model.
Probab=99.95 E-value=9.8e-29 Score=183.17 Aligned_cols=82 Identities=38% Similarity=0.616 Sum_probs=77.8
Q ss_pred CccccccccceeeeecCcceEEEcccccccccCchHHHHHHhhHHHhhc-cCCceeeEEEeecCcccchhhHHHHHHHHH
Q psy9398 72 GTGRRKSAIARVFIKIGSGKMTINRIPADKYFSRKTGLMVISQPLKLTK-HTKTFDIKINVRGGGESGQYGAVRHGITRA 150 (154)
Q Consensus 72 ~~grrK~a~aRv~i~~G~g~i~vN~~~~~~yf~~~~~~~~i~~Pl~~~~-~~~~~di~~~v~GGG~~gQa~Air~aiara 150 (154)
.+|+||+|.|+|++.||+|+|+|||+|+++|| +..+++.+++||.+++ .+++|||+|+|+|||+||||+|||||||||
T Consensus 4 ~~GrRKta~A~v~l~~G~G~i~VNg~~~~~y~-~~~~r~~i~~Pl~~~~~~~~~~Dv~i~V~GGG~sgQa~Air~aIara 82 (130)
T TIGR03627 4 TSGKRKTAIARATIREGKGRVRINGVPVELYP-PELARLKIMEPLILAGDIAKEVDIDVKVSGGGIMGQADAARTAIARG 82 (130)
T ss_pred EEeeCCCeEEEEEEEcCceEEEECCEeHHHhC-CHHHHHHHHHHHHHHhccccCccEEEEEEcCChhHHHHHHHHHHHHH
Confidence 46999999999999999999999999999875 7889999999999997 899999999999999999999999999999
Q ss_pred HhcC
Q psy9398 151 FNQL 154 (154)
Q Consensus 151 l~~~ 154 (154)
|++|
T Consensus 83 L~~~ 86 (130)
T TIGR03627 83 LVEF 86 (130)
T ss_pred HHHh
Confidence 9975
No 16
>PLN00210 40S ribosomal protein S16; Provisional
Probab=99.95 E-value=3.3e-28 Score=182.52 Aligned_cols=83 Identities=29% Similarity=0.432 Sum_probs=77.7
Q ss_pred cCccccccccceeeeecCcceEEEcccccccccCchHHHHHHhhHHHhhcc--CCceeeEEEeecCcccchhhHHHHHHH
Q psy9398 71 YGTGRRKSAIARVFIKIGSGKMTINRIPADKYFSRKTGLMVISQPLKLTKH--TKTFDIKINVRGGGESGQYGAVRHGIT 148 (154)
Q Consensus 71 ~~~grrK~a~aRv~i~~G~g~i~vN~~~~~~yf~~~~~~~~i~~Pl~~~~~--~~~~di~~~v~GGG~~gQa~Air~aia 148 (154)
..+|+||+|.|++++.+|+|+|+|||+|+++||+ ..+++++++||.+++. +++|||+|+|+|||+||||+|||+|||
T Consensus 6 ~~~GrRKta~Arv~~~~G~G~i~INg~~~~~y~~-~~~r~~i~~Pl~~~~~~~~~~~Di~~~V~GGG~sgQa~Air~aia 84 (141)
T PLN00210 6 QCFGRKKTAVAVTYCKRGRGLIKINGCPIELVQP-EILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIA 84 (141)
T ss_pred eeeccCCCceEEEEEECCCceEEECCCcHHHHCC-HHHHHHHHHHHHHhCccccCceeEEEEEEcCCHhHHHHHHHHHHH
Confidence 3679999999999999999999999999999876 7789999999999984 589999999999999999999999999
Q ss_pred HHHhcC
Q psy9398 149 RAFNQL 154 (154)
Q Consensus 149 ral~~~ 154 (154)
|||++|
T Consensus 85 raL~~~ 90 (141)
T PLN00210 85 KALVAY 90 (141)
T ss_pred HHHHHh
Confidence 999975
No 17
>PTZ00068 60S ribosomal protein L13a; Provisional
Probab=99.91 E-value=1.5e-25 Score=176.42 Aligned_cols=143 Identities=17% Similarity=0.112 Sum_probs=110.6
Q ss_pred CeEEEeCCCCchhhHHHHHHHHHhCCCceEEeeecccc-----------CCCCeeeec-----cccccccCchhHHHHhh
Q psy9398 1 MWFLIDAKNKILGRVASKIAVYLRGKHKTEYTPHIDTG-----------YPGGIRKIN-----FLKMQEDFPGRVLQKAV 64 (154)
Q Consensus 1 ~w~viDa~~~~lGRlAs~vA~~L~Gk~k~~~~~~~d~g-----------y~gg~k~~~-----~~~~~~r~P~~Il~raV 64 (154)
.|+||||+||+||||||.||+.|+.++.+++.+|++.. |--+++..+ .+++|+++|++||++||
T Consensus 4 ~w~vIDA~g~vLGRLAS~VAk~Ll~Gd~VVVVNaeki~iTG~k~~~K~~y~~~lk~~~~~nP~~g~~~~r~P~~Il~raV 83 (202)
T PTZ00068 4 KVIVIDCKGHLLGRLASVVAKELLLGQKIVVVRCEDLNISGSLFRNKVKYEEFLRKRMNTNPRRGPFHHRAPSDIFWRTV 83 (202)
T ss_pred ceEEEECCCCcHHHHHHHHHHHHhCCCEEEEEecceeEeecchhhheeeeEeeeEeeccCCCCcchhcccCHHHHHHHHH
Confidence 59999999999999999999999988888888888733 334566666 47999999999999999
Q ss_pred hhhhcccCccccccccceeeeecCcceEEEcccccccccCchHHHHHHhhH---HHhhccCCceeeEEEeecCcccchhh
Q psy9398 65 KVVNYKYGTGRRKSAIARVFIKIGSGKMTINRIPADKYFSRKTGLMVISQP---LKLTKHTKTFDIKINVRGGGESGQYG 141 (154)
Q Consensus 65 ~gmlp~~~~grrK~a~aRv~i~~G~g~i~vN~~~~~~yf~~~~~~~~i~~P---l~~~~~~~~~di~~~v~GGG~~gQa~ 141 (154)
+||||++ +-+++.++.|+++|+|++..+-.-+.+. ||.. ++..-+.| ++.++. +.-.+.|+-..++.+.+
T Consensus 84 rGMLPkk-~~~Gr~alkrLkVy~G~php~~~~k~~v--vp~A-~r~~rl~~~~ky~~lg~---ls~~vGwky~~vv~~le 156 (202)
T PTZ00068 84 RGMLPHK-TKRGAAALKRLKVFEGVPAPYDKVKRVV--IPSA-LRVLRLKPERPYTVLGD---LSAHVGWKYADVVAKLE 156 (202)
T ss_pred hhhCCCC-ChhHHHHHhCCEEecCCCCchhccCccc--ccch-hhhhccCCCCceeeHHH---HHHHhCccHHHHHHHHH
Confidence 9999973 3566789999999999987766666655 5532 22222333 444443 35567788889999999
Q ss_pred HHHHHHHHH
Q psy9398 142 AVRHGITRA 150 (154)
Q Consensus 142 Air~aiara 150 (154)
+-|.+-|.+
T Consensus 157 ~krk~k~~~ 165 (202)
T PTZ00068 157 EKRKERAAA 165 (202)
T ss_pred HHHHHHHHH
Confidence 888877764
No 18
>KOG1697|consensus
Probab=99.91 E-value=2.1e-24 Score=173.49 Aligned_cols=97 Identities=33% Similarity=0.523 Sum_probs=88.0
Q ss_pred hHHHHhhhhhhccc-------CccccccccceeeeecCcceEEEcccccccccCchHHHHHHhhHHHhhccCCceeeEEE
Q psy9398 58 RVLQKAVKVVNYKY-------GTGRRKSAIARVFIKIGSGKMTINRIPADKYFSRKTGLMVISQPLKLTKHTKTFDIKIN 130 (154)
Q Consensus 58 ~Il~raV~gmlp~~-------~~grrK~a~aRv~i~~G~g~i~vN~~~~~~yf~~~~~~~~i~~Pl~~~~~~~~~di~~~ 130 (154)
..+++-++-|.+-. ..|+||.+.|+|++.+|+|+|.|||+++++||+...+|+.++.||.+++.+++|||+++
T Consensus 132 ~f~~~~~k~~~~~g~~~~~~~~~g~rK~a~A~V~v~~GtGk~~vNg~~~~~yF~~~~~Re~ll~Pl~~~~~lg~~dv~at 211 (275)
T KOG1697|consen 132 KFLKRFRKPLDESGKPEVRIIAVGRRKCARATVKVQPGTGKFDVNGRDLDVYFQHLQHREQLLYPLAVSESLGKYDVTAT 211 (275)
T ss_pred HHHHHHHhcccccCCCceeeeeccceecceeEEEEecCceeEEecchhHHhHhccchhHHHHhhhHHHhccccceeEEEE
Confidence 35555566665432 46999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCcccchhhHHHHHHHHHHhcC
Q psy9398 131 VRGGGESGQYGAVRHGITRAFNQL 154 (154)
Q Consensus 131 v~GGG~~gQa~Air~aiaral~~~ 154 (154)
|+|||.|||++||++|||+||+.|
T Consensus 212 v~GGG~sgqagAI~~gia~aL~~~ 235 (275)
T KOG1697|consen 212 VSGGGPSGQAGAIRLGIAKALASF 235 (275)
T ss_pred ecCCCccchhHHHHHHHHHHHHhc
Confidence 999999999999999999999875
No 19
>PRK06394 rpl13p 50S ribosomal protein L13P; Reviewed
Probab=99.89 E-value=1.8e-23 Score=157.78 Aligned_cols=96 Identities=19% Similarity=0.141 Sum_probs=82.3
Q ss_pred EEEeCCCCchhhHHHHHHHHHhCCCceEEeeecc--------------ccCCCCeeee----ccccccccCchhHHHHhh
Q psy9398 3 FLIDAKNKILGRVASKIAVYLRGKHKTEYTPHID--------------TGYPGGIRKI----NFLKMQEDFPGRVLQKAV 64 (154)
Q Consensus 3 ~viDa~~~~lGRlAs~vA~~L~Gk~k~~~~~~~d--------------~gy~gg~k~~----~~~~~~~r~P~~Il~raV 64 (154)
+||||+||+||||||.||+.|+|++.+++.+|++ ++|+ +.+.. +++++++++|++|+++||
T Consensus 5 ~viDA~~~vlGRLAs~IA~~L~~Gd~VVViNa~kv~~tG~K~~~~~~y~~~~-~~k~~~np~~~~~~~~r~P~~il~~AV 83 (146)
T PRK06394 5 VVIDAEGQILGRLASYVAKRLLEGEEVVIVNAEKAVITGNRERVIEKYKQRR-ERGSHYNPYRNGPKYPRRPDRIFKRTI 83 (146)
T ss_pred EEEECCCCchHHHHHHHHHHHhCCCEEEEEechheEecCchhhheeeEeCCC-CCcccCCCCChHHhhhcCHHHHHHHHH
Confidence 7999999999999999999999999999998886 3566 46666 678999999999999999
Q ss_pred hhhhcccCccccccccceeeeecCcceEEEcccccc
Q psy9398 65 KVVNYKYGTGRRKSAIARVFIKIGSGKMTINRIPAD 100 (154)
Q Consensus 65 ~gmlp~~~~grrK~a~aRv~i~~G~g~i~vN~~~~~ 100 (154)
+||||++ +-+++.++.|+++|+|++..+-..+|..
T Consensus 84 ~gMLP~k-n~~gr~~~~rLkvy~G~~h~~~~qkp~~ 118 (146)
T PRK06394 84 RGMLPYK-KPRGREALKRLKVYVGVPKELEGKEFEV 118 (146)
T ss_pred HhcCCCC-ChhHHHHHhCcEEecCCCCCcccCCCEE
Confidence 9999942 3556779999999999987777777755
No 20
>TIGR01077 L13_A_E ribosomal protein L13, archaeal/eukaryotic. This model represents ribosomal protein of L13 from the Archaea and from the eukaryotic cytosol. Bacterial and organellar forms are represented by TIGR01066.
Probab=99.87 E-value=1.4e-22 Score=152.44 Aligned_cols=100 Identities=19% Similarity=0.181 Sum_probs=81.0
Q ss_pred EEEeCCCCchhhHHHHHHHHHhCCCceEEeeecc---cc------------CCCCeeee-ccccccccCchhHHHHhhhh
Q psy9398 3 FLIDAKNKILGRVASKIAVYLRGKHKTEYTPHID---TG------------YPGGIRKI-NFLKMQEDFPGRVLQKAVKV 66 (154)
Q Consensus 3 ~viDa~~~~lGRlAs~vA~~L~Gk~k~~~~~~~d---~g------------y~gg~k~~-~~~~~~~r~P~~Il~raV~g 66 (154)
+||||+||+||||||.||+.|+-++.+++.++++ || ++++..+. +++++++++|++|+++||+|
T Consensus 1 ivIDA~~~vlGRLAs~IA~~L~~Gd~VvViNaeki~~TG~k~~~k~~y~~~~~~g~~~~~~~~~~~~r~P~~il~~aVrG 80 (142)
T TIGR01077 1 TVIDGSGHILGRLASVVAKQLLNGEKVVVVNAEKIVISGNFYRNKLKYKEFLRKRTLTNPRRGPFFPRAPSRIFRRTVRG 80 (142)
T ss_pred CEEeCCCCchHHHHHHHHHHHhcCCEEEEEechHheecCchhhheeEEEEECCCCCcccCCHHHhhhcCHHHHHHHHHHH
Confidence 5899999999999999999999777777777775 11 35555444 67999999999999999999
Q ss_pred hhcccCccccccccceeeeecCcceEEEcccccccccCc
Q psy9398 67 VNYKYGTGRRKSAIARVFIKIGSGKMTINRIPADKYFSR 105 (154)
Q Consensus 67 mlp~~~~grrK~a~aRv~i~~G~g~i~vN~~~~~~yf~~ 105 (154)
|||+++ -+++.++.|+++|+|++...-+.++.. |+.
T Consensus 81 MLPk~~-~~Gr~~~krLkvy~G~~h~~~~qk~~~--~~~ 116 (142)
T TIGR01077 81 MLPHKT-ARGRAALRRLKVYVGIPPELDKKKRVV--VPE 116 (142)
T ss_pred hCCCCC-hhHHHHHhCcEEecCCCCCccccCccc--cCh
Confidence 999852 345678999999999987777777755 553
No 21
>KOG1753|consensus
Probab=99.71 E-value=1.5e-17 Score=122.17 Aligned_cols=82 Identities=29% Similarity=0.416 Sum_probs=77.2
Q ss_pred CccccccccceeeeecCcceEEEcccccccccCchHHHHHHhhHHHhhc--cCCceeeEEEeecCcccchhhHHHHHHHH
Q psy9398 72 GTGRRKSAIARVFIKIGSGKMTINRIPADKYFSRKTGLMVISQPLKLTK--HTKTFDIKINVRGGGESGQYGAVRHGITR 149 (154)
Q Consensus 72 ~~grrK~a~aRv~i~~G~g~i~vN~~~~~~yf~~~~~~~~i~~Pl~~~~--~~~~~di~~~v~GGG~~gQa~Air~aiar 149 (154)
..|++|++.+-+++..|+|.|.|||.|++. +++..++.++++|+.+++ ....+||.+.|+|||.++|.+|||+++|+
T Consensus 11 ~fG~KK~AtAva~ck~G~glikvNg~ple~-ie~~~L~~Kl~Epvlllgk~rfa~vdi~v~~~ggghvsqiyairqa~~k 89 (145)
T KOG1753|consen 11 VFGRKKTATAVAHCKHGSGLIKVNGRPLEL-IEPEILRYKLLEPVLLLGKERFAGVDIRVRVKGGGHVSQIYAIRQAIAK 89 (145)
T ss_pred eeccccceEEEEEeecCceEEEECCcchHh-ccHHHHHHHHhhhHhhhhhhhhCCCceEEEEecCchHHHHHHHHHHhhH
Confidence 569999999999999999999999999996 689999999999999996 57889999999999999999999999999
Q ss_pred HHhcC
Q psy9398 150 AFNQL 154 (154)
Q Consensus 150 al~~~ 154 (154)
||++|
T Consensus 90 alvay 94 (145)
T KOG1753|consen 90 ALVAY 94 (145)
T ss_pred HHHHH
Confidence 99975
No 22
>KOG3204|consensus
Probab=99.47 E-value=1.4e-14 Score=112.90 Aligned_cols=143 Identities=17% Similarity=0.119 Sum_probs=106.5
Q ss_pred EEEeCCCCchhhHHHHHHHHHhCCCceEEeeeccccCCCCeee-------e--ccccccccCchhHHHHhhhhhhcccCc
Q psy9398 3 FLIDAKNKILGRVASKIAVYLRGKHKTEYTPHIDTGYPGGIRK-------I--NFLKMQEDFPGRVLQKAVKVVNYKYGT 73 (154)
Q Consensus 3 ~viDa~~~~lGRlAs~vA~~L~Gk~k~~~~~~~d~gy~gg~k~-------~--~~~~~~~r~P~~Il~raV~gmlp~~~~ 73 (154)
.+||+.+|++|||||.||+.|+.+.|+++..|++....|+.-. . ..+|+|.+-|++|+++++++|+|+ ++
T Consensus 8 ~vidg~~hllGrlAa~vaK~ll~g~kvvvvr~E~i~isg~f~r~k~~lrk~~~~ng~~hfr~ps~i~~~~vrgm~~~-kt 86 (197)
T KOG3204|consen 8 VVIDGRGHLLGRLAAIVAKQLLLGRKVVVVRCEEINISGNFYRNKLFLRKRLNRNGPFHFRAPSRILQKAVRGMYPH-KT 86 (197)
T ss_pred eeccchhhhhhhHHHHHHHHHhcCCeEEEEEEeEEEEecceecchHHHhhhhcccCcchhhhHHHHHHHhhcccccc-CC
Confidence 5899999999999999999999999999999998776665422 1 127999999999999999999997 55
Q ss_pred cccccccceeeeecCcceEEEcccccccccCchHHHHHHhhHHHhhccCCceeeEEEeecCcccchhhHHHHHHHH
Q psy9398 74 GRRKSAIARVFIKIGSGKMTINRIPADKYFSRKTGLMVISQPLKLTKHTKTFDIKINVRGGGESGQYGAVRHGITR 149 (154)
Q Consensus 74 grrK~a~aRv~i~~G~g~i~vN~~~~~~yf~~~~~~~~i~~Pl~~~~~~~~~di~~~v~GGG~~gQa~Air~aiar 149 (154)
.+.+.++.++.+|+|.+..+-+-+++.--+...+++ ++|-.-..+++...-.+.|+-=-.++-.+.-|..-|+
T Consensus 87 ~rg~aal~~l~~~eGip~~~dk~~r~v~p~a~~v~~---lk~~~K~c~lG~L~~eVGWkyq~vtatLEeKRKeK~~ 159 (197)
T KOG3204|consen 87 KRGRAALERLRVFEGIPPPYDKQKRLVVPVAFQVLR---LKPYKKYCLLGRLSHEVGWKYQAVTATLEEKRKEKAK 159 (197)
T ss_pred CccHHHHHHHHHhCCCCChhhhcCCccCCcceeeec---ccCCceeEEeccchhhhcchhHHHHHHHHHHHhHhhh
Confidence 888999999999999877766666655322233333 3333333344555666677766666666666655443
No 23
>KOG0058|consensus
Probab=89.20 E-value=0.21 Score=46.48 Aligned_cols=78 Identities=27% Similarity=0.394 Sum_probs=56.0
Q ss_pred ccccccccceee--ee-cCcceEEEcccccccccCchHHHHHHhh----H--------------------------HH--
Q psy9398 73 TGRRKSAIARVF--IK-IGSGKMTINRIPADKYFSRKTGLMVISQ----P--------------------------LK-- 117 (154)
Q Consensus 73 ~grrK~a~aRv~--i~-~G~g~i~vN~~~~~~yf~~~~~~~~i~~----P--------------------------l~-- 117 (154)
.|.+|..++.+- .| |-+|+|.++|+|+.+| ....+|.+|-. | -.
T Consensus 503 SGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~-~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~A 581 (716)
T KOG0058|consen 503 SGSGKSTIASLLLRFYDPTSGRILLDGVPISDI-NHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMA 581 (716)
T ss_pred CCCCHHHHHHHHHHhcCCCCCeEEECCeehhhc-CHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 477788877664 45 7889999999999994 77776665421 1 11
Q ss_pred -----hhccCCceeeEEEeecCccc-chhhHHHHHHHHHHhc
Q psy9398 118 -----LTKHTKTFDIKINVRGGGES-GQYGAVRHGITRAFNQ 153 (154)
Q Consensus 118 -----~~~~~~~~di~~~v~GGG~~-gQa~Air~aiaral~~ 153 (154)
+.+..++||..+.=||-=+| ||-+ |.||||||+.
T Consensus 582 Nah~FI~~~p~gY~T~VGEkG~qLSGGQKQ--RIAIARALlr 621 (716)
T KOG0058|consen 582 NAHEFITNFPDGYNTVVGEKGSQLSGGQKQ--RIAIARALLR 621 (716)
T ss_pred ChHHHHHhCccccccccCCccccccchHHH--HHHHHHHHhc
Confidence 22457789999999985555 3655 7799999974
No 24
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=86.27 E-value=0.64 Score=41.13 Aligned_cols=81 Identities=19% Similarity=0.223 Sum_probs=52.0
Q ss_pred Cccccccccceeee---ecCcceEEEcccccccc----------cC------chHHH------------HHHhhHHHhhc
Q psy9398 72 GTGRRKSAIARVFI---KIGSGKMTINRIPADKY----------FS------RKTGL------------MVISQPLKLTK 120 (154)
Q Consensus 72 ~~grrK~a~aRv~i---~~G~g~i~vN~~~~~~y----------f~------~~~~~------------~~i~~Pl~~~~ 120 (154)
.+|-+|+.+.++-. -|.+|+|.+||.++.++ .+ +...+ +++.+-+..++
T Consensus 369 ~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~ 448 (529)
T TIGR02868 369 PSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVG 448 (529)
T ss_pred CCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcC
Confidence 35788999888764 36789999999877642 21 11122 22333344332
Q ss_pred -------cCCceeeEEEeecCcccchhhHHHHHHHHHHhc
Q psy9398 121 -------HTKTFDIKINVRGGGESGQYGAVRHGITRAFNQ 153 (154)
Q Consensus 121 -------~~~~~di~~~v~GGG~~gQa~Air~aiaral~~ 153 (154)
..+.||..+.=+|-.+||= +.=|.||||||++
T Consensus 449 l~~~i~~lp~GldT~ige~G~~LSGG-QrQRiaiARall~ 487 (529)
T TIGR02868 449 LADWLRSLPDGLDTVLGEGGARLSGG-ERQRLALARALLA 487 (529)
T ss_pred CHHHHHhCcccccchhccccCcCCHH-HHHHHHHHHHHhc
Confidence 2456888887767667653 4559999999974
No 25
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=83.83 E-value=2.6 Score=42.53 Aligned_cols=78 Identities=18% Similarity=0.194 Sum_probs=49.8
Q ss_pred cccccccceeeeecCcceEEEcccccccccCchHHH------------------------------HHHhhHHHhhc---
Q psy9398 74 GRRKSAIARVFIKIGSGKMTINRIPADKYFSRKTGL------------------------------MVISQPLKLTK--- 120 (154)
Q Consensus 74 grrK~a~aRv~i~~G~g~i~vN~~~~~~yf~~~~~~------------------------------~~i~~Pl~~~~--- 120 (154)
+.+..+-..-..++.+|+|++||.++.+| ....+| +.+.+-+...+
T Consensus 1261 ~~~~~~~~~~~~~~~~G~I~idG~di~~~-~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~ 1339 (1466)
T PTZ00265 1261 TKEGGSGEDSTVFKNSGKILLDGVDICDY-NLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDE 1339 (1466)
T ss_pred ccccccccccccCCCCCeEEECCEEHHhC-CHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHH
Confidence 44444445555668899999999988653 222211 22333333322
Q ss_pred ----cCCceeeEEEeecCcccchhhHHHHHHHHHHhc
Q psy9398 121 ----HTKTFDIKINVRGGGESGQYGAVRHGITRAFNQ 153 (154)
Q Consensus 121 ----~~~~~di~~~v~GGG~~gQa~Air~aiaral~~ 153 (154)
+-..||..+.-+|..+|| =+.=|.||||||+.
T Consensus 1340 fI~~LP~GydT~VGe~G~~LSG-GQkQRIaIARALlr 1375 (1466)
T PTZ00265 1340 FIESLPNKYDTNVGPYGKSLSG-GQKQRIAIARALLR 1375 (1466)
T ss_pred HHHhCccccCCccCCCCCcCCH-HHHHHHHHHHHHhc
Confidence 346789988877777775 46679999999974
No 26
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=81.38 E-value=2.5 Score=35.18 Aligned_cols=65 Identities=23% Similarity=0.360 Sum_probs=41.9
Q ss_pred cccccceeeeecCcceEEEcccccccccCchHHHHHHhhHHHhhccCC---ceeeEEEeecCcccchhhH-HHHHHHHHH
Q psy9398 76 RKSAIARVFIKIGSGKMTINRIPADKYFSRKTGLMVISQPLKLTKHTK---TFDIKINVRGGGESGQYGA-VRHGITRAF 151 (154)
Q Consensus 76 rK~a~aRv~i~~G~g~i~vN~~~~~~yf~~~~~~~~i~~Pl~~~~~~~---~~di~~~v~GGG~~gQa~A-ir~aiaral 151 (154)
++....++.+||-. +|-...-..|.+-|...+..+ .||+.|.++|||-.....+ =-..+||||
T Consensus 37 ~r~~~~~~~~~p~~-------------vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai 103 (319)
T PF02601_consen 37 RRNPIVEIILYPAS-------------VQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAI 103 (319)
T ss_pred HhCCCcEEEEEecc-------------ccccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHHH
Confidence 35566777777543 333334445666677776554 7999999999998776655 234556665
Q ss_pred hc
Q psy9398 152 NQ 153 (154)
Q Consensus 152 ~~ 153 (154)
++
T Consensus 104 ~~ 105 (319)
T PF02601_consen 104 AA 105 (319)
T ss_pred Hh
Confidence 54
No 27
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=78.74 E-value=1.9 Score=38.68 Aligned_cols=81 Identities=22% Similarity=0.206 Sum_probs=51.5
Q ss_pred Cccccccccceee--eecCcceEEEcccccccc-----------cC------chHHH------------HHHhhHHHhhc
Q psy9398 72 GTGRRKSAIARVF--IKIGSGKMTINRIPADKY-----------FS------RKTGL------------MVISQPLKLTK 120 (154)
Q Consensus 72 ~~grrK~a~aRv~--i~~G~g~i~vN~~~~~~y-----------f~------~~~~~------------~~i~~Pl~~~~ 120 (154)
.+|-+|+.+.++- .+|-+|+|.+||.++.++ .+ +...+ +++.+-+...+
T Consensus 384 ~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~ 463 (588)
T PRK11174 384 PSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAW 463 (588)
T ss_pred CCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhC
Confidence 3578888877654 237789999999887652 21 11122 22333333332
Q ss_pred -------cCCceeeEEEeecCcccchhhHHHHHHHHHHhc
Q psy9398 121 -------HTKTFDIKINVRGGGESGQYGAVRHGITRAFNQ 153 (154)
Q Consensus 121 -------~~~~~di~~~v~GGG~~gQa~Air~aiaral~~ 153 (154)
..+.||..+.-+|..+||= +-=|.||||||+.
T Consensus 464 l~~~i~~lp~G~dT~vge~G~~LSGG-QrQRialARAll~ 502 (588)
T PRK11174 464 VSEFLPLLPQGLDTPIGDQAAGLSVG-QAQRLALARALLQ 502 (588)
T ss_pred HHHHHHhcccccccccccCCCCCCHH-HHHHHHHHHHHhc
Confidence 3357788888777777742 4669999999974
No 28
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=77.85 E-value=2 Score=39.74 Aligned_cols=81 Identities=21% Similarity=0.269 Sum_probs=50.0
Q ss_pred Cccccccccceeee--e-cCcceEEEccccccccc-----------------CchHHHH------------HHhhHHHhh
Q psy9398 72 GTGRRKSAIARVFI--K-IGSGKMTINRIPADKYF-----------------SRKTGLM------------VISQPLKLT 119 (154)
Q Consensus 72 ~~grrK~a~aRv~i--~-~G~g~i~vN~~~~~~yf-----------------~~~~~~~------------~i~~Pl~~~ 119 (154)
.+|-+|+.+.++-. + |.+|+|.+||+|+.+|= .+...++ ++.+-+..+
T Consensus 515 ~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a 594 (711)
T TIGR00958 515 PSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAA 594 (711)
T ss_pred CCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHc
Confidence 35788888888653 2 67899999999886531 1111222 222223322
Q ss_pred c-------cCCceeeEEEeecCcccchhhHHHHHHHHHHhc
Q psy9398 120 K-------HTKTFDIKINVRGGGESGQYGAVRHGITRAFNQ 153 (154)
Q Consensus 120 ~-------~~~~~di~~~v~GGG~~gQa~Air~aiaral~~ 153 (154)
+ ..+.||..+.-.|.-+|| =+.=|.||||||+.
T Consensus 595 ~l~~~i~~lp~GldT~ige~G~~LSG-GQkQRlalARALl~ 634 (711)
T TIGR00958 595 NAHDFIMEFPNGYDTEVGEKGSQLSG-GQKQRIAIARALVR 634 (711)
T ss_pred CCHHHHHhCCCccCCcccCCCCcCCH-HHHHHHHHHHHHhc
Confidence 2 234578777766655663 35679999999974
No 29
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=77.10 E-value=2.1 Score=39.44 Aligned_cols=81 Identities=17% Similarity=0.256 Sum_probs=50.4
Q ss_pred Cccccccccceeee--e-cCcceEEEcccccccc-----------cC------chHHHHHH-------------hhHHHh
Q psy9398 72 GTGRRKSAIARVFI--K-IGSGKMTINRIPADKY-----------FS------RKTGLMVI-------------SQPLKL 118 (154)
Q Consensus 72 ~~grrK~a~aRv~i--~-~G~g~i~vN~~~~~~y-----------f~------~~~~~~~i-------------~~Pl~~ 118 (154)
.+|-+|+.+.++-. | |.+|+|++||.++.++ .+ +...++.+ .+-+..
T Consensus 508 ~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~ 587 (708)
T TIGR01193 508 MSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEI 587 (708)
T ss_pred CCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHH
Confidence 45788999988764 3 6789999999987542 11 11122222 222222
Q ss_pred hc-------cCCceeeEEEeecCcccchhhHHHHHHHHHHhc
Q psy9398 119 TK-------HTKTFDIKINVRGGGESGQYGAVRHGITRAFNQ 153 (154)
Q Consensus 119 ~~-------~~~~~di~~~v~GGG~~gQa~Air~aiaral~~ 153 (154)
.+ .-..||..+.-.|..+|| =+.=|.+|||||+.
T Consensus 588 a~l~~~i~~lp~gldt~i~e~G~~LSg-GQrQRialARall~ 628 (708)
T TIGR01193 588 AEIKDDIENMPLGYQTELSEEGSSISG-GQKQRIALARALLT 628 (708)
T ss_pred hCCHHHHHhcccccCcEecCCCCCCCH-HHHHHHHHHHHHhh
Confidence 22 234678887766766764 35568899999974
No 30
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=75.37 E-value=3.4 Score=37.99 Aligned_cols=80 Identities=20% Similarity=0.276 Sum_probs=50.7
Q ss_pred Cccccccccceeee--e-cCcceEEEcccccccccCch------------------HHHH------------HHhhHHHh
Q psy9398 72 GTGRRKSAIARVFI--K-IGSGKMTINRIPADKYFSRK------------------TGLM------------VISQPLKL 118 (154)
Q Consensus 72 ~~grrK~a~aRv~i--~-~G~g~i~vN~~~~~~yf~~~------------------~~~~------------~i~~Pl~~ 118 (154)
.+|-+|+.+.++-. | |.+|+|.+||.++.++ +.. ..++ ++.+-+..
T Consensus 499 ~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~-~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~ 577 (694)
T TIGR03375 499 RIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQI-DPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAEL 577 (694)
T ss_pred CCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhC-CHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHH
Confidence 45888999888753 3 6789999999887652 211 1122 22222332
Q ss_pred hc-------cCCceeeEEEeecCcccchhhHHHHHHHHHHhc
Q psy9398 119 TK-------HTKTFDIKINVRGGGESGQYGAVRHGITRAFNQ 153 (154)
Q Consensus 119 ~~-------~~~~~di~~~v~GGG~~gQa~Air~aiaral~~ 153 (154)
++ ....||..+.-.|..+||= +-=|.||||||+.
T Consensus 578 ~~l~~~i~~lp~gl~T~i~e~G~~LSgG-QrQRlalARall~ 618 (694)
T TIGR03375 578 AGVTEFVRRHPDGLDMQIGERGRSLSGG-QRQAVALARALLR 618 (694)
T ss_pred cChHHHHHhCcccccceecCCCCCCCHH-HHHHHHHHHHHhc
Confidence 22 2346788887677667663 4668999999974
No 31
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=75.01 E-value=3 Score=38.40 Aligned_cols=81 Identities=25% Similarity=0.311 Sum_probs=51.4
Q ss_pred Cccccccccceeee---ecCcceEEEcccccccc-----------cC------chHHHHHH------------hhHHHhh
Q psy9398 72 GTGRRKSAIARVFI---KIGSGKMTINRIPADKY-----------FS------RKTGLMVI------------SQPLKLT 119 (154)
Q Consensus 72 ~~grrK~a~aRv~i---~~G~g~i~vN~~~~~~y-----------f~------~~~~~~~i------------~~Pl~~~ 119 (154)
.+|-+|+.+.++-. -|.+|+|.+||.++.++ .+ +...++.+ .+-+..+
T Consensus 513 ~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~ 592 (710)
T TIGR03796 513 GSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDA 592 (710)
T ss_pred CCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHh
Confidence 45888999988764 37789999999987642 21 11222222 2222222
Q ss_pred c-------cCCceeeEEEeecCcccchhhHHHHHHHHHHhc
Q psy9398 120 K-------HTKTFDIKINVRGGGESGQYGAVRHGITRAFNQ 153 (154)
Q Consensus 120 ~-------~~~~~di~~~v~GGG~~gQa~Air~aiaral~~ 153 (154)
+ .-..||..+.-.|..+|| =+-=|.|+||||+.
T Consensus 593 ~l~~~i~~lp~gl~t~i~e~G~~LSG-GQrQRiaLARall~ 632 (710)
T TIGR03796 593 AIHDVITSRPGGYDAELAEGGANLSG-GQRQRLEIARALVR 632 (710)
T ss_pred CCHHHHHhCcCcccceeccCCCCCCH-HHHHHHHHHHHHhh
Confidence 2 234678887777777775 25668999999974
No 32
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=74.91 E-value=3.4 Score=36.98 Aligned_cols=80 Identities=23% Similarity=0.264 Sum_probs=50.4
Q ss_pred Cccccccccceee--ee-cCcceEEEcccccccccCchHHH------------------------------HHHhhHHHh
Q psy9398 72 GTGRRKSAIARVF--IK-IGSGKMTINRIPADKYFSRKTGL------------------------------MVISQPLKL 118 (154)
Q Consensus 72 ~~grrK~a~aRv~--i~-~G~g~i~vN~~~~~~yf~~~~~~------------------------------~~i~~Pl~~ 118 (154)
.+|-+|+.+.++- .| +.+|+|.|||.++.++ +...+| +++.+-+..
T Consensus 363 ~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i-~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~ 441 (567)
T COG1132 363 PSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDI-SLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKL 441 (567)
T ss_pred CCCCCHHHHHHHHhccCCCCCCeEEECCEehhhc-CHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHH
Confidence 3577787777654 34 4589999999888763 322222 233333443
Q ss_pred hc-------cCCceeeEEEeecCcccchhhHHHHHHHHHHhc
Q psy9398 119 TK-------HTKTFDIKINVRGGGESGQYGAVRHGITRAFNQ 153 (154)
Q Consensus 119 ~~-------~~~~~di~~~v~GGG~~gQa~Air~aiaral~~ 153 (154)
++ .-+.||..+. .+|..-+.=+--|.+|||||+.
T Consensus 442 a~~~d~I~~lp~g~dt~vg-e~G~~LSgGQrQrlaiARall~ 482 (567)
T COG1132 442 ANAHEFIANLPDGYDTIVG-ERGVNLSGGQRQRLAIARALLR 482 (567)
T ss_pred hChHHHHHhCcccccceec-CCCccCCHHHHHHHHHHHHHhc
Confidence 32 2336888888 5555455566779999999974
No 33
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=74.85 E-value=4.3 Score=36.48 Aligned_cols=81 Identities=19% Similarity=0.210 Sum_probs=51.6
Q ss_pred Cccccccccceeee--e-cCcceEEEcccccccc-----------cC------chHHH-----------HHHhhHHHhhc
Q psy9398 72 GTGRRKSAIARVFI--K-IGSGKMTINRIPADKY-----------FS------RKTGL-----------MVISQPLKLTK 120 (154)
Q Consensus 72 ~~grrK~a~aRv~i--~-~G~g~i~vN~~~~~~y-----------f~------~~~~~-----------~~i~~Pl~~~~ 120 (154)
.+|-+|+.+.++-. + |.+|.|.+||.++.++ .+ +...+ +++.+-+..++
T Consensus 375 ~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~g 454 (592)
T PRK10790 375 HTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQ 454 (592)
T ss_pred CCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcC
Confidence 45888998888764 2 6789999999988653 11 11122 22333333332
Q ss_pred -------cCCceeeEEEeecCcccchhhHHHHHHHHHHhc
Q psy9398 121 -------HTKTFDIKINVRGGGESGQYGAVRHGITRAFNQ 153 (154)
Q Consensus 121 -------~~~~~di~~~v~GGG~~gQa~Air~aiaral~~ 153 (154)
.-+.||..+.=.|..+|| -+.=|.+|||||+.
T Consensus 455 l~~~i~~lp~Gldt~i~e~g~~LSG-GqrQRialARaLl~ 493 (592)
T PRK10790 455 LAELARSLPDGLYTPLGEQGNNLSV-GQKQLLALARVLVQ 493 (592)
T ss_pred cHHHHHhccccccccccCCCCCCCH-HHHHHHHHHHHHHh
Confidence 335678877766666765 46679999999974
No 34
>KOG3288|consensus
Probab=71.30 E-value=4 Score=33.92 Aligned_cols=29 Identities=28% Similarity=0.295 Sum_probs=26.3
Q ss_pred CCceeeEEEeecCcccchhhHHHHHHHHH
Q psy9398 122 TKTFDIKINVRGGGESGQYGAVRHGITRA 150 (154)
Q Consensus 122 ~~~~di~~~v~GGG~~gQa~Air~aiara 150 (154)
..+|.+.+.+.+=|++||.+|.+||.|-.
T Consensus 272 t~~ftlRC~~Cq~glvGq~ea~eHA~~TG 300 (307)
T KOG3288|consen 272 TAKFTLRCMVCQMGLVGQKEAAEHAKATG 300 (307)
T ss_pred ccceEEEeeecccceeeHHHHHHHHHhcC
Confidence 56899999999999999999999998754
No 35
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=69.35 E-value=5.8 Score=33.02 Aligned_cols=71 Identities=24% Similarity=0.342 Sum_probs=49.2
Q ss_pred ccccccccceeeee---cCcceEEEcccccccccCchHHHHHHhhHHHhhc----cCCceeeEEEeecCcccchhhHHHH
Q psy9398 73 TGRRKSAIARVFIK---IGSGKMTINRIPADKYFSRKTGLMVISQPLKLTK----HTKTFDIKINVRGGGESGQYGAVRH 145 (154)
Q Consensus 73 ~grrK~a~aRv~i~---~G~g~i~vN~~~~~~yf~~~~~~~~i~~Pl~~~~----~~~~~di~~~v~GGG~~gQa~Air~ 145 (154)
+|-+|+.++|+-+- |-+|+|+.+|+++.. +.....++++.+=|..++ ...+|+-.. .| ||-+ |.
T Consensus 48 SG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~-~~~~~~~~~v~elL~~Vgl~~~~~~ryPhel--SG----GQrQ--Ri 118 (268)
T COG4608 48 SGCGKSTLGRLILGLEEPTSGEILFEGKDITK-LSKEERRERVLELLEKVGLPEEFLYRYPHEL--SG----GQRQ--RI 118 (268)
T ss_pred CCCCHHHHHHHHHcCcCCCCceEEEcCcchhh-cchhHHHHHHHHHHHHhCCCHHHhhcCCccc--Cc----hhhh--hH
Confidence 47788888887654 578999999999875 455556666777777765 344555443 23 3444 78
Q ss_pred HHHHHHh
Q psy9398 146 GITRAFN 152 (154)
Q Consensus 146 aiaral~ 152 (154)
+|||||+
T Consensus 119 ~IARALa 125 (268)
T COG4608 119 GIARALA 125 (268)
T ss_pred HHHHHHh
Confidence 8999885
No 36
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=69.25 E-value=5.9 Score=36.38 Aligned_cols=81 Identities=19% Similarity=0.165 Sum_probs=50.2
Q ss_pred Cccccccccceeee--e-cCcceEEEcccccccc-----------cC------chHHHH-----------HHhhHHHhhc
Q psy9398 72 GTGRRKSAIARVFI--K-IGSGKMTINRIPADKY-----------FS------RKTGLM-----------VISQPLKLTK 120 (154)
Q Consensus 72 ~~grrK~a~aRv~i--~-~G~g~i~vN~~~~~~y-----------f~------~~~~~~-----------~i~~Pl~~~~ 120 (154)
.+|-+|+.+.++-+ | |.+|+|.+||+++.+| .+ +...++ ++.+-+..++
T Consensus 487 ~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~ 566 (686)
T TIGR03797 487 PSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAG 566 (686)
T ss_pred CCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcC
Confidence 45788999888753 3 6789999999988642 11 111222 2233333333
Q ss_pred -------cCCceeeEEEeecCcccchhhHHHHHHHHHHhc
Q psy9398 121 -------HTKTFDIKINVRGGGESGQYGAVRHGITRAFNQ 153 (154)
Q Consensus 121 -------~~~~~di~~~v~GGG~~gQa~Air~aiaral~~ 153 (154)
.-..||..+.-.|..+|| =+-=|.||||||+.
T Consensus 567 l~~~i~~lp~G~dt~ige~G~~LSG-GQrQRialARAll~ 605 (686)
T TIGR03797 567 LAEDIRAMPMGMHTVISEGGGTLSG-GQRQRLLIARALVR 605 (686)
T ss_pred cHHHHHhccccccccccCCCCCCCH-HHHHHHHHHHHHhc
Confidence 234677777666666653 24568899999974
No 37
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=67.31 E-value=5.7 Score=31.98 Aligned_cols=76 Identities=21% Similarity=0.241 Sum_probs=43.3
Q ss_pred ccccccccceeeee---cCcceEEEcccccccc---------------cC------------------------chHHHH
Q psy9398 73 TGRRKSAIARVFIK---IGSGKMTINRIPADKY---------------FS------------------------RKTGLM 110 (154)
Q Consensus 73 ~grrK~a~aRv~i~---~G~g~i~vN~~~~~~y---------------f~------------------------~~~~~~ 110 (154)
+|-+|+.+.++-.- |..|+|.+||.++..+ || ....+.
T Consensus 37 SGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~ 116 (223)
T COG2884 37 SGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRR 116 (223)
T ss_pred CCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHH
Confidence 36667776665433 5667888888776432 11 112444
Q ss_pred HHhhHHHhhccCCceeeEEEeecCcccchhhHHHHHHHHHHhc
Q psy9398 111 VISQPLKLTKHTKTFDIKINVRGGGESGQYGAVRHGITRAFNQ 153 (154)
Q Consensus 111 ~i~~Pl~~~~~~~~~di~~~v~GGG~~gQa~Air~aiaral~~ 153 (154)
.+.+-|..+++..+-+..=..-.|| |-=|.||||||+.
T Consensus 117 rV~~~L~~VgL~~k~~~lP~~LSGG-----EQQRvaIARAiV~ 154 (223)
T COG2884 117 RVSEVLDLVGLKHKARALPSQLSGG-----EQQRVAIARAIVN 154 (223)
T ss_pred HHHHHHHHhccchhhhcCccccCch-----HHHHHHHHHHHcc
Confidence 5555555555555444443333333 3358899999974
No 38
>PF13541 ChlI: Subunit ChlI of Mg-chelatase
Probab=65.69 E-value=18 Score=26.34 Aligned_cols=67 Identities=19% Similarity=0.111 Sum_probs=49.5
Q ss_pred eeecCcceEEEcccccccccCchHHHHHHhhHHHhhc-cCCceeeEEEeecCcccchhhHHHHHHHHHHhc
Q psy9398 84 FIKIGSGKMTINRIPADKYFSRKTGLMVISQPLKLTK-HTKTFDIKINVRGGGESGQYGAVRHGITRAFNQ 153 (154)
Q Consensus 84 ~i~~G~g~i~vN~~~~~~yf~~~~~~~~i~~Pl~~~~-~~~~~di~~~v~GGG~~gQa~Air~aiaral~~ 153 (154)
.+-+|.+.+.|-|.+-.. -...++++..-+...+ ....-||++++.+||+.=+--+.-+|||-||+.
T Consensus 4 ~~~~Glp~~~ivGl~~~a---v~esr~Rv~~al~~~g~~~p~~~i~VNlap~~l~k~g~~~DLaIA~ails 71 (121)
T PF13541_consen 4 DISRGLPSFNIVGLPDTA---VKESRERVRSALKNSGFPFPNQDITVNLAPADLKKEGPAFDLAIAIAILS 71 (121)
T ss_pred EEcCCCCceEEecCchHH---HHHHHHHHHHHHHhcCCCCCcceeeeEEEeCCEEEeeeeehHHHHHHHHH
Confidence 344666677777776442 2446677877777776 456789999999999988888888888888763
No 39
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=65.58 E-value=5.2 Score=32.70 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=20.8
Q ss_pred ccccccccceeeee---cCcceEEEccccc
Q psy9398 73 TGRRKSAIARVFIK---IGSGKMTINRIPA 99 (154)
Q Consensus 73 ~grrK~a~aRv~i~---~G~g~i~vN~~~~ 99 (154)
+|-+|+.+.|+--. +.+|.|.|+|..+
T Consensus 37 SGSGKSTlLRclN~LE~~~~G~I~i~g~~~ 66 (240)
T COG1126 37 SGSGKSTLLRCLNGLEEPDSGSITVDGEDV 66 (240)
T ss_pred CCCCHHHHHHHHHCCcCCCCceEEECCEec
Confidence 47788888887643 6789999999644
No 40
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=65.33 E-value=12 Score=34.34 Aligned_cols=80 Identities=24% Similarity=0.289 Sum_probs=53.2
Q ss_pred Cccccccccceeee---ecCcceEEEcccccccccCchHH------------------------------HHHHhhHHHh
Q psy9398 72 GTGRRKSAIARVFI---KIGSGKMTINRIPADKYFSRKTG------------------------------LMVISQPLKL 118 (154)
Q Consensus 72 ~~grrK~a~aRv~i---~~G~g~i~vN~~~~~~yf~~~~~------------------------------~~~i~~Pl~~ 118 (154)
.+|-+|+++..+-. -|..|+|.|||.++.+ +..... .+.+.+-++.
T Consensus 355 ~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~-l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~ 433 (559)
T COG4988 355 ASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRD-LSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQ 433 (559)
T ss_pred CCCCCHHHHHHHHhCcCCCCCceEEECCccccc-cCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHH
Confidence 45888888877653 2578999999998865 332222 2334444443
Q ss_pred hcc------CCceeeEEEeecCcccchhhHHHHHHHHHHhc
Q psy9398 119 TKH------TKTFDIKINVRGGGESGQYGAVRHGITRAFNQ 153 (154)
Q Consensus 119 ~~~------~~~~di~~~v~GGG~~gQa~Air~aiaral~~ 153 (154)
++. .+.+|..+.=.|-|+||= +|-|.|+||||+.
T Consensus 434 a~l~~~v~~p~GLdt~ige~G~~LSgG-Q~QRlaLARAll~ 473 (559)
T COG4988 434 AGLLEFVPKPDGLDTVIGEGGAGLSGG-QAQRLALARALLS 473 (559)
T ss_pred hcHHHhhcCCCcccchhccCCCCCCHH-HHHHHHHHHHhcC
Confidence 321 346787788888888863 5679999999963
No 41
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=64.65 E-value=7.6 Score=34.74 Aligned_cols=81 Identities=23% Similarity=0.237 Sum_probs=50.1
Q ss_pred Cccccccccceeee--e-cCcceEEEccccccc-----------ccC------chHHHHHHh-------------hHHHh
Q psy9398 72 GTGRRKSAIARVFI--K-IGSGKMTINRIPADK-----------YFS------RKTGLMVIS-------------QPLKL 118 (154)
Q Consensus 72 ~~grrK~a~aRv~i--~-~G~g~i~vN~~~~~~-----------yf~------~~~~~~~i~-------------~Pl~~ 118 (154)
.+|.+|+.+.++-. + |.+|+|++||.++.+ |.+ +...++.+. +.+..
T Consensus 377 ~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~ 456 (582)
T PRK11176 377 RSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARM 456 (582)
T ss_pred CCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHH
Confidence 45888999988764 2 667999999998754 221 112333333 22222
Q ss_pred hc-------cCCceeeEEEeecCcccchhhHHHHHHHHHHhc
Q psy9398 119 TK-------HTKTFDIKINVRGGGESGQYGAVRHGITRAFNQ 153 (154)
Q Consensus 119 ~~-------~~~~~di~~~v~GGG~~gQa~Air~aiaral~~ 153 (154)
++ .-..+|..+.-.|--+|| =+.=|.+|||||+.
T Consensus 457 ~~l~~~i~~lp~Gldt~ig~~g~~LSG-GqrQRi~LARall~ 497 (582)
T PRK11176 457 AYAMDFINKMDNGLDTVIGENGVLLSG-GQRQRIAIARALLR 497 (582)
T ss_pred hCcHHHHHhcccccCceeCCCCCcCCH-HHHHHHHHHHHHHh
Confidence 22 334577777755544554 56678999999974
No 42
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=64.38 E-value=12 Score=32.61 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=23.7
Q ss_pred HHHHHHhhHHHhhccCCceeeEEEeecCcccchh
Q psy9398 107 TGLMVISQPLKLTKHTKTFDIKINVRGGGESGQY 140 (154)
Q Consensus 107 ~~~~~i~~Pl~~~~~~~~~di~~~v~GGG~~gQa 140 (154)
..-..|.+-|...+..+ ||+.|.++|||...-.
T Consensus 176 ~A~~~i~~al~~~~~~~-~Dviii~RGGGS~eDL 208 (438)
T PRK00286 176 GAAASIVAAIERANARG-EDVLIVARGGGSLEDL 208 (438)
T ss_pred cHHHHHHHHHHHhcCCC-CCEEEEecCCCCHHHh
Confidence 34445666666666655 8999999999976654
No 43
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=64.14 E-value=5.7 Score=30.00 Aligned_cols=76 Identities=22% Similarity=0.137 Sum_probs=41.4
Q ss_pred Cccccccccceeee---ecCcceEEEcccccccccCchHHHHHHhhH---HHhhccCCceeeEEEeecCcccchhhHHHH
Q psy9398 72 GTGRRKSAIARVFI---KIGSGKMTINRIPADKYFSRKTGLMVISQP---LKLTKHTKTFDIKINVRGGGESGQYGAVRH 145 (154)
Q Consensus 72 ~~grrK~a~aRv~i---~~G~g~i~vN~~~~~~yf~~~~~~~~i~~P---l~~~~~~~~~di~~~v~GGG~~gQa~Air~ 145 (154)
.+|-+|+.+.++-. .+..|+|++||.++..+ .....+..+..- +..++.....+- . ...-+.-+.-|.
T Consensus 33 ~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~-~~~~~~~~i~~~~q~l~~~gl~~~~~~----~-~~~LS~G~~qrl 106 (180)
T cd03214 33 PNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASL-SPKELARKIAYVPQALELLGLAHLADR----P-FNELSGGERQRV 106 (180)
T ss_pred CCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcC-CHHHHHHHHhHHHHHHHHcCCHhHhcC----C-cccCCHHHHHHH
Confidence 34777888877653 36779999999988653 322222222211 222222211121 1 222334467889
Q ss_pred HHHHHHhc
Q psy9398 146 GITRAFNQ 153 (154)
Q Consensus 146 aiaral~~ 153 (154)
++||||+.
T Consensus 107 ~laral~~ 114 (180)
T cd03214 107 LLARALAQ 114 (180)
T ss_pred HHHHHHhc
Confidence 99999874
No 44
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=61.08 E-value=6.9 Score=34.79 Aligned_cols=81 Identities=21% Similarity=0.170 Sum_probs=48.9
Q ss_pred Cccccccccceee--ee-cCcceEEEccccccc-----------cc------CchHHHHHHh-------------hHHHh
Q psy9398 72 GTGRRKSAIARVF--IK-IGSGKMTINRIPADK-----------YF------SRKTGLMVIS-------------QPLKL 118 (154)
Q Consensus 72 ~~grrK~a~aRv~--i~-~G~g~i~vN~~~~~~-----------yf------~~~~~~~~i~-------------~Pl~~ 118 (154)
.+|-+|+.+.++- ++ |.+|+|.+||+++.+ |. .+...++.+. +-+..
T Consensus 366 ~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~ 445 (571)
T TIGR02203 366 RSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAA 445 (571)
T ss_pred CCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHH
Confidence 4588899988874 33 677999999987653 21 1222333222 22222
Q ss_pred hc-------cCCceeeEEEeecCcccchhhHHHHHHHHHHhc
Q psy9398 119 TK-------HTKTFDIKINVRGGGESGQYGAVRHGITRAFNQ 153 (154)
Q Consensus 119 ~~-------~~~~~di~~~v~GGG~~gQa~Air~aiaral~~ 153 (154)
++ ....+|..+.-.|--+|| -+.=|.||||||+.
T Consensus 446 ~~l~~~i~~lp~gldt~i~~~g~~LSg-GqrQRiaLARall~ 486 (571)
T TIGR02203 446 AYAQDFVDKLPLGLDTPIGENGVLLSG-GQRQRLAIARALLK 486 (571)
T ss_pred cChHHHHHhCcCcccceecCCCCcCCH-HHHHHHHHHHHHhc
Confidence 22 234577777655444443 46679999999974
No 45
>PLN03130 ABC transporter C family member; Provisional
Probab=59.58 E-value=14 Score=37.85 Aligned_cols=80 Identities=16% Similarity=0.183 Sum_probs=49.7
Q ss_pred Cccccccccceeee--e-cCcceEEEcccccccccCchHHH-----------------------------HHHhhHHHhh
Q psy9398 72 GTGRRKSAIARVFI--K-IGSGKMTINRIPADKYFSRKTGL-----------------------------MVISQPLKLT 119 (154)
Q Consensus 72 ~~grrK~a~aRv~i--~-~G~g~i~vN~~~~~~yf~~~~~~-----------------------------~~i~~Pl~~~ 119 (154)
.+|-+|+++.++-. + +.+|+|.|||.++.++ +...+| +.+.+-++.+
T Consensus 1273 rSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i-~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a 1351 (1622)
T PLN03130 1273 RTGAGKSSMLNALFRIVELERGRILIDGCDISKF-GLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERA 1351 (1622)
T ss_pred CCCCCHHHHHHHHhCcCCCCCceEEECCEecccC-CHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHc
Confidence 45788888877653 2 6789999999988652 322222 2233333333
Q ss_pred c-------cCCceeeEEEeecCcccchhhHHHHHHHHHHhc
Q psy9398 120 K-------HTKTFDIKINVRGGGESGQYGAVRHGITRAFNQ 153 (154)
Q Consensus 120 ~-------~~~~~di~~~v~GGG~~gQa~Air~aiaral~~ 153 (154)
+ .-..||..+.=.|.-+| .=+-=|.+|||||+.
T Consensus 1352 ~l~~~I~~lp~GLdt~Vge~G~nLS-gGQrQrlaLARALLr 1391 (1622)
T PLN03130 1352 HLKDVIRRNSLGLDAEVSEAGENFS-VGQRQLLSLARALLR 1391 (1622)
T ss_pred CcHHHHHhCccccCccccCCCCCCC-HHHHHHHHHHHHHHc
Confidence 2 23567877765555555 334568899999974
No 46
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=59.14 E-value=12 Score=34.40 Aligned_cols=81 Identities=16% Similarity=0.215 Sum_probs=49.8
Q ss_pred Cccccccccceeee--e-cCcceEEEcccccccc-----------cC------chHHHHH------------HhhHHHhh
Q psy9398 72 GTGRRKSAIARVFI--K-IGSGKMTINRIPADKY-----------FS------RKTGLMV------------ISQPLKLT 119 (154)
Q Consensus 72 ~~grrK~a~aRv~i--~-~G~g~i~vN~~~~~~y-----------f~------~~~~~~~------------i~~Pl~~~ 119 (154)
.+|-+|+.+.++-. + |.+|+|++||.++.++ .+ +...++. +.+-+..+
T Consensus 491 ~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~ 570 (694)
T TIGR01846 491 PSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLA 570 (694)
T ss_pred CCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHc
Confidence 45788999888763 3 6789999999987652 11 1112222 22222222
Q ss_pred c-------cCCceeeEEEeecCcccchhhHHHHHHHHHHhc
Q psy9398 120 K-------HTKTFDIKINVRGGGESGQYGAVRHGITRAFNQ 153 (154)
Q Consensus 120 ~-------~~~~~di~~~v~GGG~~gQa~Air~aiaral~~ 153 (154)
+ .-..||..+.-.|..+|| =+-=|.++||||++
T Consensus 571 ~l~~~i~~lp~gl~t~i~~~g~~LSg-Gq~qri~lARall~ 610 (694)
T TIGR01846 571 GAHDFISELPQGYNTEVGEKGANLSG-GQRQRIAIARALVG 610 (694)
T ss_pred ChHHHHHhCcCccCcEecCCCCCCCH-HHHHHHHHHHHHHh
Confidence 2 234578887766666664 45578999999974
No 47
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=58.11 E-value=11 Score=33.79 Aligned_cols=81 Identities=21% Similarity=0.207 Sum_probs=49.1
Q ss_pred Cccccccccceeee--e-cCcceEEEcccccccc-----------cC------chHHHHHHh------------hHHHhh
Q psy9398 72 GTGRRKSAIARVFI--K-IGSGKMTINRIPADKY-----------FS------RKTGLMVIS------------QPLKLT 119 (154)
Q Consensus 72 ~~grrK~a~aRv~i--~-~G~g~i~vN~~~~~~y-----------f~------~~~~~~~i~------------~Pl~~~ 119 (154)
.+|-+|+.+.++-. + |.+|.|++||+++.++ .+ +...++.+. .-+..+
T Consensus 369 ~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~ 448 (588)
T PRK13657 369 PTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERA 448 (588)
T ss_pred CCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 45888999988765 3 6779999999877642 11 112222222 112211
Q ss_pred c-------cCCceeeEEEeecCcccchhhHHHHHHHHHHhc
Q psy9398 120 K-------HTKTFDIKINVRGGGESGQYGAVRHGITRAFNQ 153 (154)
Q Consensus 120 ~-------~~~~~di~~~v~GGG~~gQa~Air~aiaral~~ 153 (154)
+ ....+|..+.-.|--+|| =+--|.||||||+.
T Consensus 449 ~l~~~i~~lp~gldt~i~~~g~~LSg-Gq~QRialARall~ 488 (588)
T PRK13657 449 QAHDFIERKPDGYDTVVGERGRQLSG-GERQRLAIARALLK 488 (588)
T ss_pred CHHHHHHhCcccccchhcCCCCCCCH-HHHHHHHHHHHHhc
Confidence 1 234577766555545655 36789999999974
No 48
>PF12396 DUF3659: Protein of unknown function (DUF3659) ; InterPro: IPR022124 This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=56.47 E-value=3.2 Score=27.12 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.6
Q ss_pred EEEeCCCCchhhHHHHHHHHHhCCC
Q psy9398 3 FLIDAKNKILGRVASKIAVYLRGKH 27 (154)
Q Consensus 3 ~viDa~~~~lGRlAs~vA~~L~Gk~ 27 (154)
.|+|.+|+++|||..=-++.|.|+.
T Consensus 14 ~V~d~~G~~vG~vveGd~k~L~G~~ 38 (64)
T PF12396_consen 14 NVVDDDGNVVGRVVEGDPKKLVGKK 38 (64)
T ss_pred eEECCCCCEEEEEecCCHHHhcCCc
Confidence 4789999999999999999999875
No 49
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=55.77 E-value=9.2 Score=34.07 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=22.5
Q ss_pred Cccccccccceeee---ecCcceEEEccccccc
Q psy9398 72 GTGRRKSAIARVFI---KIGSGKMTINRIPADK 101 (154)
Q Consensus 72 ~~grrK~a~aRv~i---~~G~g~i~vN~~~~~~ 101 (154)
.+|-+|+.+.++-. .|.+|+|.+||.++.+
T Consensus 352 ~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~ 384 (544)
T TIGR01842 352 PSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQ 384 (544)
T ss_pred CCCCCHHHHHHHHhCCCCCCCceEEECCEehhh
Confidence 35788888887653 2678999999987654
No 50
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=55.17 E-value=3.3 Score=34.15 Aligned_cols=47 Identities=30% Similarity=0.475 Sum_probs=33.0
Q ss_pred Cccccccccceeee---ecCcceEEEccccccc-------------ccCc--------hHHHHHHhhHHHh
Q psy9398 72 GTGRRKSAIARVFI---KIGSGKMTINRIPADK-------------YFSR--------KTGLMVISQPLKL 118 (154)
Q Consensus 72 ~~grrK~a~aRv~i---~~G~g~i~vN~~~~~~-------------yf~~--------~~~~~~i~~Pl~~ 118 (154)
..|-+|+.++|+-+ .|..|.|+++|+++.. -||+ ......+.+|+..
T Consensus 41 eSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~ 111 (252)
T COG1124 41 ESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP 111 (252)
T ss_pred CCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc
Confidence 35788999999865 3778999999975543 2432 2456678888886
No 51
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=53.31 E-value=18 Score=32.01 Aligned_cols=81 Identities=25% Similarity=0.314 Sum_probs=48.1
Q ss_pred Cccccccccceeee--e-cCcceEEEcccccccc-----------cC------chHHHHH------------HhhHHHhh
Q psy9398 72 GTGRRKSAIARVFI--K-IGSGKMTINRIPADKY-----------FS------RKTGLMV------------ISQPLKLT 119 (154)
Q Consensus 72 ~~grrK~a~aRv~i--~-~G~g~i~vN~~~~~~y-----------f~------~~~~~~~------------i~~Pl~~~ 119 (154)
.+|-+|+.+.++-. + |.+|+|.+||.++.++ .+ +...++. +.+.+...
T Consensus 356 ~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~ 435 (529)
T TIGR02857 356 PSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERA 435 (529)
T ss_pred CCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHc
Confidence 35788888887653 2 6779999999987542 11 1122222 22333333
Q ss_pred c-------cCCceeeEEEeecCcccchhhHHHHHHHHHHhc
Q psy9398 120 K-------HTKTFDIKINVRGGGESGQYGAVRHGITRAFNQ 153 (154)
Q Consensus 120 ~-------~~~~~di~~~v~GGG~~gQa~Air~aiaral~~ 153 (154)
+ ..+.||..+.-.|.-+|| -+.=|.++||||+.
T Consensus 436 ~l~~~i~~lp~Gldt~v~e~g~~LSg-Gq~qri~laRal~~ 475 (529)
T TIGR02857 436 GLDEFVAALPQGLDTLIGEGGAGLSG-GQAQRLALARAFLR 475 (529)
T ss_pred CcHHHHHhCcccccchhccccccCCH-HHHHHHHHHHHHhc
Confidence 2 223567666554444443 55789999999974
No 52
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=52.47 E-value=16 Score=32.55 Aligned_cols=62 Identities=18% Similarity=0.203 Sum_probs=43.7
Q ss_pred hhhhhhcccCccccccccceeeeecCcceEEEcccccccccCchHHHHHHhhHHHhhccCCceeeEEEeecCcccchh
Q psy9398 63 AVKVVNYKYGTGRRKSAIARVFIKIGSGKMTINRIPADKYFSRKTGLMVISQPLKLTKHTKTFDIKINVRGGGESGQY 140 (154)
Q Consensus 63 aV~gmlp~~~~grrK~a~aRv~i~~G~g~i~vN~~~~~~yf~~~~~~~~i~~Pl~~~~~~~~~di~~~v~GGG~~gQa 140 (154)
+++.++ ++-+++....++.+||-. +|-...-..|.+-+...+..+.+|+.|..+|||..--.
T Consensus 148 airDIl---~~~~rR~P~~~viv~pt~-------------VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDL 209 (440)
T COG1570 148 ALRDIL---HTLSRRFPSVEVIVYPTL-------------VQGEGAAEEIVEAIERANQRGDVDVLIVARGGGSIEDL 209 (440)
T ss_pred HHHHHH---HHHHhhCCCCeEEEEecc-------------ccCCCcHHHHHHHHHHhhccCCCCEEEEecCcchHHHH
Confidence 455555 224566667778777643 33334455678888899999899999999999976544
No 53
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=52.05 E-value=12 Score=33.81 Aligned_cols=81 Identities=22% Similarity=0.254 Sum_probs=48.0
Q ss_pred Cccccccccceeee---ecCcceEEEccccccc-----------ccC------chHHHHHHhh------------HHHhh
Q psy9398 72 GTGRRKSAIARVFI---KIGSGKMTINRIPADK-----------YFS------RKTGLMVISQ------------PLKLT 119 (154)
Q Consensus 72 ~~grrK~a~aRv~i---~~G~g~i~vN~~~~~~-----------yf~------~~~~~~~i~~------------Pl~~~ 119 (154)
.+|-+|+.+.++-. -|.+|+|.+||.++.+ |.+ +...++.+.. -+...
T Consensus 369 ~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~ 448 (585)
T TIGR01192 369 PTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAA 448 (585)
T ss_pred CCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 35788988888653 3678999999987654 111 1112222211 11111
Q ss_pred -------ccCCceeeEEEeecCcccchhhHHHHHHHHHHhc
Q psy9398 120 -------KHTKTFDIKINVRGGGESGQYGAVRHGITRAFNQ 153 (154)
Q Consensus 120 -------~~~~~~di~~~v~GGG~~gQa~Air~aiaral~~ 153 (154)
...+.+|..+.-.|..+|| =+--|.+|||||+.
T Consensus 449 ~~~~~i~~l~~g~~t~~~~~~~~LSg-Gq~qrl~lARall~ 488 (585)
T TIGR01192 449 AAHDFILKRSNGYDTLVGERGNRLSG-GERQRLAIARAILK 488 (585)
T ss_pred CcHHHHHhccccccchhcCCCCCCCH-HHHHHHHHHHHHhc
Confidence 1234566666666666764 36678999999974
No 54
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=51.43 E-value=11 Score=29.05 Aligned_cols=29 Identities=10% Similarity=0.125 Sum_probs=22.2
Q ss_pred Cccccccccceeee---ecCcceEEEcccccc
Q psy9398 72 GTGRRKSAIARVFI---KIGSGKMTINRIPAD 100 (154)
Q Consensus 72 ~~grrK~a~aRv~i---~~G~g~i~vN~~~~~ 100 (154)
.+|-+|+.+.++-. .|.+|+|.+||.++.
T Consensus 33 ~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~ 64 (177)
T cd03222 33 PNGTGKTTAVKILAGQLIPNGDNDEWDGITPV 64 (177)
T ss_pred CCCChHHHHHHHHHcCCCCCCcEEEECCEEEE
Confidence 45788998888653 467899999998654
No 55
>PLN03232 ABC transporter C family member; Provisional
Probab=50.47 E-value=24 Score=35.79 Aligned_cols=80 Identities=16% Similarity=0.169 Sum_probs=50.3
Q ss_pred Cccccccccceeee--e-cCcceEEEcccccccccCchHH-----------------------------HHHHhhHHHhh
Q psy9398 72 GTGRRKSAIARVFI--K-IGSGKMTINRIPADKYFSRKTG-----------------------------LMVISQPLKLT 119 (154)
Q Consensus 72 ~~grrK~a~aRv~i--~-~G~g~i~vN~~~~~~yf~~~~~-----------------------------~~~i~~Pl~~~ 119 (154)
.+|-+|+++..+-. + |.+|+|.|||.++.++ +...+ -+++.+-+..+
T Consensus 1270 ~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i-~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a 1348 (1495)
T PLN03232 1270 RTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKF-GLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERA 1348 (1495)
T ss_pred CCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhC-CHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHc
Confidence 35778888877643 2 6779999999988652 21111 12333334433
Q ss_pred c-------cCCceeeEEEeecCcccchhhHHHHHHHHHHhc
Q psy9398 120 K-------HTKTFDIKINVRGGGESGQYGAVRHGITRAFNQ 153 (154)
Q Consensus 120 ~-------~~~~~di~~~v~GGG~~gQa~Air~aiaral~~ 153 (154)
+ .-..+|..+.-.|..+|| =+-=|.+|||||+.
T Consensus 1349 ~l~~~I~~lp~GLdt~v~e~G~~LSg-GQrQrlaLARALLr 1388 (1495)
T PLN03232 1349 HIKDVIDRNPFGLDAEVSEGGENFSV-GQRQLLSLARALLR 1388 (1495)
T ss_pred CCHHHHHhCcCCCCceecCCCCCCCH-HHHHHHHHHHHHHh
Confidence 2 235678877776666764 24558899999974
No 56
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=48.82 E-value=6.3 Score=29.41 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=22.6
Q ss_pred Cccccccccceeee---ecCcceEEEccccccc
Q psy9398 72 GTGRRKSAIARVFI---KIGSGKMTINRIPADK 101 (154)
Q Consensus 72 ~~grrK~a~aRv~i---~~G~g~i~vN~~~~~~ 101 (154)
.+|-+|+.+.++-. .|.+|+|.+||+++..
T Consensus 34 ~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~ 66 (163)
T cd03216 34 ENGAGKSTLMKILSGLYKPDSGEILVDGKEVSF 66 (163)
T ss_pred CCCCCHHHHHHHHhCCCCCCCeEEEECCEECCc
Confidence 34777888887653 3678999999998764
No 57
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=48.48 E-value=19 Score=36.57 Aligned_cols=80 Identities=18% Similarity=0.119 Sum_probs=49.4
Q ss_pred Cccccccccceeee--e-cCcceEEEcccccccccCchH------------------HH-----------HHHhhHHHhh
Q psy9398 72 GTGRRKSAIARVFI--K-IGSGKMTINRIPADKYFSRKT------------------GL-----------MVISQPLKLT 119 (154)
Q Consensus 72 ~~grrK~a~aRv~i--~-~G~g~i~vN~~~~~~yf~~~~------------------~~-----------~~i~~Pl~~~ 119 (154)
.+|-+|+++..+-. + +.+|+|.|||.++.++ +... .| +.+.+-+..+
T Consensus 1320 rTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i-~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a 1398 (1522)
T TIGR00957 1320 RTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKI-GLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELA 1398 (1522)
T ss_pred CCCCCHHHHHHHHhcCccCCCCeEEECCEEcccc-CHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHc
Confidence 45778888776543 3 5679999999988653 2111 11 2233333333
Q ss_pred c-------cCCceeeEEEeecCcccchhhHHHHHHHHHHhc
Q psy9398 120 K-------HTKTFDIKINVRGGGESGQYGAVRHGITRAFNQ 153 (154)
Q Consensus 120 ~-------~~~~~di~~~v~GGG~~gQa~Air~aiaral~~ 153 (154)
+ .-+.||..+.-.|..+|| =+-=|.+|||||+.
T Consensus 1399 ~l~~~I~~lp~GLdt~v~e~G~~LSg-GQrQrl~LARALLr 1438 (1522)
T TIGR00957 1399 HLKTFVSALPDKLDHECAEGGENLSV-GQRQLVCLARALLR 1438 (1522)
T ss_pred CcHHHHhhCccCCCceecCCCCcCCH-HHHHHHHHHHHHHc
Confidence 2 125688888776766764 34458889999974
No 58
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=48.09 E-value=23 Score=31.18 Aligned_cols=45 Identities=22% Similarity=0.344 Sum_probs=29.3
Q ss_pred HHHHHhhHHHhhccCCceeeEEEeecCcccchhhHH-HHHHHHHHh
Q psy9398 108 GLMVISQPLKLTKHTKTFDIKINVRGGGESGQYGAV-RHGITRAFN 152 (154)
Q Consensus 108 ~~~~i~~Pl~~~~~~~~~di~~~v~GGG~~gQa~Ai-r~aiaral~ 152 (154)
.-..|.+-+...+..+.+|+.|..+|||...-.-+- -..+|||+.
T Consensus 171 a~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~Fn~e~~~rai~ 216 (432)
T TIGR00237 171 AVQSIVESIELANTKNECDVLIVGRGGGSLEDLWSFNDEKVARAIF 216 (432)
T ss_pred HHHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhcCcHHHHHHHH
Confidence 344566666666666679999999999987665442 123444443
No 59
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=48.08 E-value=12 Score=32.11 Aligned_cols=47 Identities=28% Similarity=0.289 Sum_probs=32.6
Q ss_pred ccccccccceeeee---cCcceEEEccccccc----------cc------CchHHHHHHhhHHHhh
Q psy9398 73 TGRRKSAIARVFIK---IGSGKMTINRIPADK----------YF------SRKTGLMVISQPLKLT 119 (154)
Q Consensus 73 ~grrK~a~aRv~i~---~G~g~i~vN~~~~~~----------yf------~~~~~~~~i~~Pl~~~ 119 (154)
+|=+|+.+.|+-.= +.+|+|.|+|+++.+ .| |+...++.+..||..-
T Consensus 38 SGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~ 103 (338)
T COG3839 38 SGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR 103 (338)
T ss_pred CCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC
Confidence 47788888887642 568999999988765 22 4445566677777653
No 60
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=47.11 E-value=45 Score=31.74 Aligned_cols=69 Identities=16% Similarity=0.188 Sum_probs=37.6
Q ss_pred eeeecCcceEEEcccccccccCchHHH--HHHh---hHHHhh-ccCCceeeEEEeecCcccchhhHHHHHHHHHHh
Q psy9398 83 VFIKIGSGKMTINRIPADKYFSRKTGL--MVIS---QPLKLT-KHTKTFDIKINVRGGGESGQYGAVRHGITRAFN 152 (154)
Q Consensus 83 v~i~~G~g~i~vN~~~~~~yf~~~~~~--~~i~---~Pl~~~-~~~~~~di~~~v~GGG~~gQa~Air~aiaral~ 152 (154)
+.+.+|.|++.++|. +.+.++..... .-+. .-+.+. +...++||+++|-||....---+.=+|++-||+
T Consensus 615 ~~~~~g~g~~~~tG~-lg~vmkes~~~A~~~~~~~~~~~~~~~~~~~~~Di~i~v~~g~~~~dgpsagla~~~Al~ 689 (784)
T PRK10787 615 TACVPGKGKLTYTGS-LGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPSAGIAMCTALV 689 (784)
T ss_pred EEEecCCceEEEecC-cHHHHHHHHHHHHHHHHHHHHHcCCCcccccCceEEEEecCCCCCCCCCchHHHHHHHHH
Confidence 335689999999994 44434322111 1111 111111 235678999999998666443444455555554
No 61
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=47.06 E-value=23 Score=31.77 Aligned_cols=81 Identities=26% Similarity=0.318 Sum_probs=47.7
Q ss_pred Cccccccccceeee---ecCcceEEEcccccccc-----------cC------chHHHHHHh------------hHHHhh
Q psy9398 72 GTGRRKSAIARVFI---KIGSGKMTINRIPADKY-----------FS------RKTGLMVIS------------QPLKLT 119 (154)
Q Consensus 72 ~~grrK~a~aRv~i---~~G~g~i~vN~~~~~~y-----------f~------~~~~~~~i~------------~Pl~~~ 119 (154)
.+|-+|+.+.++-. -|.+|+|.+||+++.++ .+ +...++.+. +-+...
T Consensus 349 ~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~ 428 (569)
T PRK10789 349 PTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLA 428 (569)
T ss_pred CCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHc
Confidence 45788888877653 36789999999987542 11 112222221 112221
Q ss_pred c-------cCCceeeEEEeecCcccchhhHHHHHHHHHHhc
Q psy9398 120 K-------HTKTFDIKINVRGGGESGQYGAVRHGITRAFNQ 153 (154)
Q Consensus 120 ~-------~~~~~di~~~v~GGG~~gQa~Air~aiaral~~ 153 (154)
+ ....+|..+.-.|..+|| =+.-|.++||||+.
T Consensus 429 ~l~~~i~~lp~gl~t~~~~~g~~LSg-Gq~qRi~lARall~ 468 (569)
T PRK10789 429 SVHDDILRLPQGYDTEVGERGVMLSG-GQKQRISIARALLL 468 (569)
T ss_pred CCHHHHHhCcCcccceecCCCCcCCH-HHHHHHHHHHHHhc
Confidence 1 224567666666555654 46689999999974
No 62
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=41.63 E-value=19 Score=26.92 Aligned_cols=30 Identities=23% Similarity=0.472 Sum_probs=22.2
Q ss_pred Cccccccccceeee---ecCcceEEEccccccc
Q psy9398 72 GTGRRKSAIARVFI---KIGSGKMTINRIPADK 101 (154)
Q Consensus 72 ~~grrK~a~aRv~i---~~G~g~i~vN~~~~~~ 101 (154)
.+|-+|+.+.++-. .|.+|+|.+||+++..
T Consensus 36 ~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~ 68 (173)
T cd03246 36 PSGSGKSTLARLILGLLRPTSGRVRLDGADISQ 68 (173)
T ss_pred CCCCCHHHHHHHHHhccCCCCCeEEECCEEccc
Confidence 34777888877654 3567999999988764
No 63
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=41.36 E-value=15 Score=27.51 Aligned_cols=29 Identities=24% Similarity=0.548 Sum_probs=20.6
Q ss_pred ccccccccceeee---ecCcceEEEccccccc
Q psy9398 73 TGRRKSAIARVFI---KIGSGKMTINRIPADK 101 (154)
Q Consensus 73 ~grrK~a~aRv~i---~~G~g~i~vN~~~~~~ 101 (154)
+|-+|+.+.++-. .+.+|+|.+||+++..
T Consensus 37 nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~ 68 (178)
T cd03247 37 SGSGKSTLLQLLTGDLKPQQGEITLDGVPVSD 68 (178)
T ss_pred CCCCHHHHHHHHhccCCCCCCEEEECCEEHHH
Confidence 4667777776542 3567899999987654
No 64
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=41.26 E-value=38 Score=34.45 Aligned_cols=80 Identities=15% Similarity=0.073 Sum_probs=47.5
Q ss_pred Cccccccccceee--eecCcceEEEcccccccccCch------------------HHHHH-----------HhhHHHhhc
Q psy9398 72 GTGRRKSAIARVF--IKIGSGKMTINRIPADKYFSRK------------------TGLMV-----------ISQPLKLTK 120 (154)
Q Consensus 72 ~~grrK~a~aRv~--i~~G~g~i~vN~~~~~~yf~~~------------------~~~~~-----------i~~Pl~~~~ 120 (154)
.+|-+|+++..+- +++-+|.|.|||.++.++ +.. ..|+. +.+-+..++
T Consensus 1253 rSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i-~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~ 1331 (1490)
T TIGR01271 1253 RTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSV-TLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVG 1331 (1490)
T ss_pred CCCCCHHHHHHHHhhhcCCCcEEEECCEEcccC-CHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCC
Confidence 3577787765543 345679999999998652 211 12222 222233222
Q ss_pred -------cCCceeeEEEeecCcccchhhHHHHHHHHHHhc
Q psy9398 121 -------HTKTFDIKINVRGGGESGQYGAVRHGITRAFNQ 153 (154)
Q Consensus 121 -------~~~~~di~~~v~GGG~~gQa~Air~aiaral~~ 153 (154)
..+.+|..+.-.|..+| .=+-=|+++||||+.
T Consensus 1332 L~~~i~~lp~GLdt~v~e~G~nLS-gGQrQrL~LARALLr 1370 (1490)
T TIGR01271 1332 LKSVIEQFPDKLDFVLVDGGYVLS-NGHKQLMCLARSILS 1370 (1490)
T ss_pred CHHHHHhCccccccccccCCCcCC-HHHHHHHHHHHHHhC
Confidence 22567887776555565 335568899999974
No 65
>PF00475 IGPD: Imidazoleglycerol-phosphate dehydratase; InterPro: IPR000807 Imidazoleglycerol-phosphate dehydratase is the enzyme that catalyses the seventh step in the biosynthesis of histidine in bacteria, fungi and plants. In most organisms it is a monofunctional protein of about 22 to 29 kD. In some bacteria such as Escherichia coli, it is the C-terminal domain of a bifunctional protein that include a histidinol-phosphatase domain [].; GO: 0004424 imidazoleglycerol-phosphate dehydratase activity, 0000105 histidine biosynthetic process; PDB: 2F1D_G 2AE8_A 1RHY_B.
Probab=39.74 E-value=1.7e+02 Score=22.21 Aligned_cols=41 Identities=17% Similarity=0.159 Sum_probs=29.1
Q ss_pred HHHHHhhHHHhhccCCceeeEEEee-cCcccchhhHHHHHHHHHH
Q psy9398 108 GLMVISQPLKLTKHTKTFDIKINVR-GGGESGQYGAVRHGITRAF 151 (154)
Q Consensus 108 ~~~~i~~Pl~~~~~~~~~di~~~v~-GGG~~gQa~Air~aiaral 151 (154)
+....++-|.. ..+.++.+.+. |.-.==++||+-.|++|||
T Consensus 103 l~~~F~~sla~---~~~~tlHi~~~~G~N~HH~~Ea~FKa~grAL 144 (145)
T PF00475_consen 103 LVEHFFRSLAN---NAGITLHIRVLYGENDHHIIEAIFKAFGRAL 144 (145)
T ss_dssp HHHHHHHHHHH---HHTEEEEEEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH---hCCceEEEEEEeCCChHHHHHHHHHHHHHHh
Confidence 44444444433 34458888887 7777789999999999998
No 66
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=39.58 E-value=1.3e+02 Score=22.47 Aligned_cols=73 Identities=15% Similarity=0.190 Sum_probs=43.0
Q ss_pred cceeeeecCcceEE-----EcccccccccCchHHHH----HHhhHHHhhccCCceeeEEEeecCcccchhhHHHHHHHHH
Q psy9398 80 IARVFIKIGSGKMT-----INRIPADKYFSRKTGLM----VISQPLKLTKHTKTFDIKINVRGGGESGQYGAVRHGITRA 150 (154)
Q Consensus 80 ~aRv~i~~G~g~i~-----vN~~~~~~yf~~~~~~~----~i~~Pl~~~~~~~~~di~~~v~GGG~~gQa~Air~aiara 150 (154)
++|...-.+.+.+. ||+|-++..+..+.... .+..-+.-.=.-|++|+.++++..+.+...-.|-.+++++
T Consensus 7 fgr~~~~~~~~~~~vEikSvN~R~Ldi~~rlP~~l~~lE~~ir~~i~~~l~RGkV~v~i~~~~~~~~~~~~~in~~l~~~ 86 (159)
T PF03755_consen 7 FGRAEAETDGGSISVEIKSVNHRFLDISIRLPRELSSLEPEIRKLIRKKLSRGKVEVSIRVERSSESAVELRINEELAKA 86 (159)
T ss_pred CceeEEecCCeEEEEEEEecccCceeeEEeCCHHHHHHHHHHHHHHHHhcccceEEEEEEEEECcccCCCcccCHHHHHH
Confidence 44444444444443 69998887665332221 2222233333689999999999988666666565665555
Q ss_pred Hh
Q psy9398 151 FN 152 (154)
Q Consensus 151 l~ 152 (154)
+.
T Consensus 87 y~ 88 (159)
T PF03755_consen 87 YY 88 (159)
T ss_pred HH
Confidence 43
No 67
>COG0689 Rph RNase PH [Translation, ribosomal structure and biogenesis]
Probab=39.01 E-value=35 Score=27.75 Aligned_cols=85 Identities=15% Similarity=0.040 Sum_probs=55.6
Q ss_pred cccccCchhHHHHhhhhhhcccCccccccccceeeeecCcceEEEcccccccccCchHHHHHHhhHHHhhccC--Cceee
Q psy9398 50 KMQEDFPGRVLQKAVKVVNYKYGTGRRKSAIARVFIKIGSGKMTINRIPADKYFSRKTGLMVISQPLKLTKHT--KTFDI 127 (154)
Q Consensus 50 ~~~~r~P~~Il~raV~gmlp~~~~grrK~a~aRv~i~~G~g~i~vN~~~~~~yf~~~~~~~~i~~Pl~~~~~~--~~~di 127 (154)
|.+.+.+.+..-.+.++|+|..+.-|.+....+ |+..+ ++ .....++++...++.+ ...||
T Consensus 56 p~~l~~~~~g~~t~ey~m~p~sT~~R~~~~~~~-------------gR~~e--is--rli~~al~~~i~L~~~p~~~I~i 118 (230)
T COG0689 56 PRFLRGTGKGWLTAEYGMLPRSTDERKKREADR-------------GRTKE--IS--RLIGRALRAVIDLELLPESTIDI 118 (230)
T ss_pred ChhhcCCCceEEEEEEecccccccccccccccc-------------cchhH--HH--HHHHHHHHHHhhhhhcCccEEEE
Confidence 556677788888899999997542222222222 45544 33 3444566666666543 34667
Q ss_pred EEEe---ecCcccchhhHHHHHHHHHH
Q psy9398 128 KINV---RGGGESGQYGAVRHGITRAF 151 (154)
Q Consensus 128 ~~~v---~GGG~~gQa~Air~aiaral 151 (154)
++.| .||=.+++..|...|++-|.
T Consensus 119 ~~dVlqaDggTrta~It~A~lAL~DAg 145 (230)
T COG0689 119 DCDVLQADGGTRTASITGASLALADAG 145 (230)
T ss_pred EEEEEECCCCeeeehhhHHHHHHHHcC
Confidence 7766 67888999999999998775
No 68
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=36.34 E-value=22 Score=28.77 Aligned_cols=29 Identities=34% Similarity=0.546 Sum_probs=21.3
Q ss_pred Cccccccccceee---eecCcceEEEcccccc
Q psy9398 72 GTGRRKSAIARVF---IKIGSGKMTINRIPAD 100 (154)
Q Consensus 72 ~~grrK~a~aRv~---i~~G~g~i~vN~~~~~ 100 (154)
.+|.+|..+++.- +-|-+|+|.+||.++.
T Consensus 47 ~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~ 78 (267)
T COG4167 47 ENGSGKSTLAKMLAGMIEPTSGEILINDHPLH 78 (267)
T ss_pred cCCCcHhHHHHHHhcccCCCCceEEECCcccc
Confidence 3466677777653 3467899999999986
No 69
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=35.06 E-value=58 Score=24.41 Aligned_cols=30 Identities=20% Similarity=0.421 Sum_probs=22.0
Q ss_pred Cccccccccceeee---ecCcceEEEccccccc
Q psy9398 72 GTGRRKSAIARVFI---KIGSGKMTINRIPADK 101 (154)
Q Consensus 72 ~~grrK~a~aRv~i---~~G~g~i~vN~~~~~~ 101 (154)
.+|-+|+.+.++-. .+.+|+|++||.++..
T Consensus 34 ~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~ 66 (182)
T cd03215 34 LVGNGQTELAEALFGLRPPASGEITLDGKPVTR 66 (182)
T ss_pred CCCCCHHHHHHHHhCCCCCCCceEEECCEECCc
Confidence 34777888887753 2567899999987754
No 70
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.05 E-value=63 Score=24.51 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=19.7
Q ss_pred Cccccccccceeee-----ecCcceEEEccccc
Q psy9398 72 GTGRRKSAIARVFI-----KIGSGKMTINRIPA 99 (154)
Q Consensus 72 ~~grrK~a~aRv~i-----~~G~g~i~vN~~~~ 99 (154)
.+|-+|+.+.++-. -+.+|+|.+||+++
T Consensus 41 ~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 41 ESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred CCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 34677888877654 14678899988764
No 71
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=33.98 E-value=55 Score=29.08 Aligned_cols=57 Identities=14% Similarity=0.061 Sum_probs=34.6
Q ss_pred CcceEEEcccccccccC---chHHHHHHhhHHHhh---ccCCceeeEEEeecCcccchhhHHHHH
Q psy9398 88 GSGKMTINRIPADKYFS---RKTGLMVISQPLKLT---KHTKTFDIKINVRGGGESGQYGAVRHG 146 (154)
Q Consensus 88 G~g~i~vN~~~~~~yf~---~~~~~~~i~~Pl~~~---~~~~~~di~~~v~GGG~~gQa~Air~a 146 (154)
+.+.+++|+..+ |+. .......+.+|.... ......+.++-|=|||..|-+-|+.++
T Consensus 169 ~VP~~~i~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGgGpaGl~aA~~la 231 (517)
T PRK15317 169 AVPTVFLNGEEF--GQGRMTLEEILAKLDTGAAARAAEELNAKDPYDVLVVGGGPAGAAAAIYAA 231 (517)
T ss_pred ccCEEEECCcEE--EecCCCHHHHHHHHhccccccchhhcccCCCCCEEEECCCHHHHHHHHHHH
Confidence 457899999754 343 233444444432211 112234556777799999999988875
No 72
>KOG3974|consensus
Probab=33.96 E-value=27 Score=29.39 Aligned_cols=16 Identities=44% Similarity=0.534 Sum_probs=7.0
Q ss_pred HHHHHHHHhCCCceEE
Q psy9398 16 ASKIAVYLRGKHKTEY 31 (154)
Q Consensus 16 As~vA~~L~Gk~k~~~ 31 (154)
.+.|=.+++++.+|.+
T Consensus 121 i~~iley~~~~dvP~V 136 (306)
T KOG3974|consen 121 IAKILEYLRGKDVPLV 136 (306)
T ss_pred HHHHHHHHhcCCCcEE
Confidence 3333344445544444
No 73
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=33.39 E-value=37 Score=24.70 Aligned_cols=25 Identities=20% Similarity=0.310 Sum_probs=17.2
Q ss_pred ccccccccceeee---ecCcceEEEccc
Q psy9398 73 TGRRKSAIARVFI---KIGSGKMTINRI 97 (154)
Q Consensus 73 ~grrK~a~aRv~i---~~G~g~i~vN~~ 97 (154)
+|-+|+.+.++-. .+.+|+|++||+
T Consensus 35 nGsGKStLl~~l~G~~~~~~G~i~~~~~ 62 (144)
T cd03221 35 NGAGKSTLLKLIAGELEPDEGIVTWGST 62 (144)
T ss_pred CCCCHHHHHHHHcCCCCCCceEEEECCe
Confidence 4667777776542 256789999986
No 74
>KOG0055|consensus
Probab=33.23 E-value=78 Score=31.87 Aligned_cols=65 Identities=25% Similarity=0.304 Sum_probs=0.0
Q ss_pred cCcceEEEcccccccccCchH------------------------------HHHHHhhHHHhhc-------cCCceeeEE
Q psy9398 87 IGSGKMTINRIPADKYFSRKT------------------------------GLMVISQPLKLTK-------HTKTFDIKI 129 (154)
Q Consensus 87 ~G~g~i~vN~~~~~~yf~~~~------------------------------~~~~i~~Pl~~~~-------~~~~~di~~ 129 (154)
|..|.|.|+|.++.+ ++... ..++|.+-.+.++ +-..||..+
T Consensus 1042 p~~G~V~IDg~dik~-lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~v 1120 (1228)
T KOG0055|consen 1042 PDAGKVKIDGVDIKD-LNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRV 1120 (1228)
T ss_pred CCCCeEEECCccccc-CCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCcc
Q ss_pred EeecCcccchhhHHHHHHHHHHhc
Q psy9398 130 NVRGGGESGQYGAVRHGITRAFNQ 153 (154)
Q Consensus 130 ~v~GGG~~gQa~Air~aiaral~~ 153 (154)
.=+|.=+||= +-=|.||||||+.
T Consensus 1121 GerG~QLSGG-QKQRIAIARAilR 1143 (1228)
T KOG0055|consen 1121 GERGVQLSGG-QKQRIAIARAILR 1143 (1228)
T ss_pred CcccCcCCch-HHHHHHHHHHHHc
No 75
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=32.67 E-value=60 Score=28.84 Aligned_cols=57 Identities=19% Similarity=0.123 Sum_probs=33.9
Q ss_pred CcceEEEcccccccccCchHHHHHHhhHHHhh-------ccCCceeeEEEeecCcccchhhHHHHHH
Q psy9398 88 GSGKMTINRIPADKYFSRKTGLMVISQPLKLT-------KHTKTFDIKINVRGGGESGQYGAVRHGI 147 (154)
Q Consensus 88 G~g~i~vN~~~~~~yf~~~~~~~~i~~Pl~~~-------~~~~~~di~~~v~GGG~~gQa~Air~ai 147 (154)
+.+.++||+..+ ++...... .+.+.+... ......+.++-|=|||..|-+-|+.++-
T Consensus 170 ~VP~~~i~~~~~--~~g~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~dVvIIGgGpAGl~AA~~la~ 233 (515)
T TIGR03140 170 GVPAVFLNGEEF--HNGRMDLA-ELLEKLEETAGVEAASALEQLDPYDVLVVGGGPAGAAAAIYAAR 233 (515)
T ss_pred ccCEEEECCcEE--EecCCCHH-HHHHHHhhccCcccchhccccCCCCEEEECCCHHHHHHHHHHHH
Confidence 457889999754 34322221 223333222 1123445667788999999999988764
No 76
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=30.95 E-value=24 Score=25.82 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=15.3
Q ss_pred cCcceEEEcccccccccC
Q psy9398 87 IGSGKMTINRIPADKYFS 104 (154)
Q Consensus 87 ~G~g~i~vN~~~~~~yf~ 104 (154)
-.+..|.|||+|+++++.
T Consensus 60 ~~S~~I~inG~piE~~l~ 77 (120)
T PF10865_consen 60 LESPTIRINGRPIEDLLG 77 (120)
T ss_pred cCCCeeeECCEehhHhhC
Confidence 467899999999998764
No 77
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=30.07 E-value=38 Score=27.64 Aligned_cols=42 Identities=24% Similarity=0.435 Sum_probs=30.2
Q ss_pred ecCcceEEEcccccccccCchHHHHHHhhHHHhhccCCceeeEEEee
Q psy9398 86 KIGSGKMTINRIPADKYFSRKTGLMVISQPLKLTKHTKTFDIKINVR 132 (154)
Q Consensus 86 ~~G~g~i~vN~~~~~~yf~~~~~~~~i~~Pl~~~~~~~~~di~~~v~ 132 (154)
..++|+|+|+|+.+..| +... .-+-++++...+.++..++|+
T Consensus 52 ~~d~G~i~i~g~~~~~~-~s~~----LAk~lSILkQ~N~i~~rlTV~ 93 (252)
T COG4604 52 KKDSGEITIDGLELTST-PSKE----LAKKLSILKQENHINSRLTVR 93 (252)
T ss_pred cccCceEEEeeeecccC-ChHH----HHHHHHHHHhhchhhheeEHH
Confidence 35889999999999986 4332 233466777777778888773
No 78
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=27.44 E-value=60 Score=24.71 Aligned_cols=29 Identities=14% Similarity=0.074 Sum_probs=22.0
Q ss_pred CeEEEeCCCCchhhHHHHHHHHHhCCCce
Q psy9398 1 MWFLIDAKNKILGRVASKIAVYLRGKHKT 29 (154)
Q Consensus 1 ~w~viDa~~~~lGRlAs~vA~~L~Gk~k~ 29 (154)
.|.++|.+|..+|+.....+....|...+
T Consensus 7 ~~~~vd~~~~~~g~~~r~~~~~~~~~~h~ 35 (184)
T PRK03759 7 LVVLLDEQGVPTGTAEKAAAHTADTPLHL 35 (184)
T ss_pred eEEEECCCCCCcccccHHHHHhcCCCeee
Confidence 38899999999999888877544454433
No 79
>PF12637 TSCPD: TSCPD domain; InterPro: IPR024434 The domain is found in isolation in many proteins where it has a conserved C-terminal motif TSCPD, after which the domain is named. Most copies of the domain possess 4 conserved cysteines that may be part of an Iron-sulphur cluster. This domain is found at the C terminus of some ribonucleoside-diphosphate reductase enzymes.
Probab=27.31 E-value=80 Score=21.75 Aligned_cols=28 Identities=39% Similarity=0.555 Sum_probs=21.0
Q ss_pred eeeEEEeec-CcccchhhHHHHHHHHHHh
Q psy9398 125 FDIKINVRG-GGESGQYGAVRHGITRAFN 152 (154)
Q Consensus 125 ~di~~~v~G-GG~~gQa~Air~aiaral~ 152 (154)
+.|++++.. ||-.|..+|+...||-+|-
T Consensus 24 ~Evf~~~~~~Gg~~~~~~ai~rliS~~Lr 52 (95)
T PF12637_consen 24 FEVFINVGKAGGCSGNLEAIARLISLALR 52 (95)
T ss_pred eEEEEecCcCCCchHHHHHHHHHHHHHHH
Confidence 457777743 5559999999988888774
No 80
>COG1750 Archaeal serine proteases [General function prediction only]
Probab=27.20 E-value=1.5e+02 Score=27.36 Aligned_cols=59 Identities=15% Similarity=0.260 Sum_probs=43.2
Q ss_pred cccccceeeeecCcceEEEcccccccccCchHHHHHHhhHHHhhc-cCCceeeEEEeecC
Q psy9398 76 RKSAIARVFIKIGSGKMTINRIPADKYFSRKTGLMVISQPLKLTK-HTKTFDIKINVRGG 134 (154)
Q Consensus 76 rK~a~aRv~i~~G~g~i~vN~~~~~~yf~~~~~~~~i~~Pl~~~~-~~~~~di~~~v~GG 134 (154)
.-.....+.+.||+|.++|-+-|+.+-=-....|.....-+.++| -..+||+.+.|+-+
T Consensus 49 gv~~~~~vtv~pG~G~v~v~t~P~t~~d~~~SArvAa~~A~~~~Gvd~ssyd~~i~v~a~ 108 (579)
T COG1750 49 GVPINISVTVTPGDGRVYVATFPYTQIDMQGSARVAAGVALRLAGVDMSSYDVYIAVEAD 108 (579)
T ss_pred eeeeeeeeeecCCCceEEeecCCCchhccchhhHHHHHHHHHhhCCCccceeEEEEEecC
Confidence 344455566789999999999998863023456666777777886 47789999999653
No 81
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.97 E-value=83 Score=23.35 Aligned_cols=29 Identities=21% Similarity=0.402 Sum_probs=20.6
Q ss_pred ccccccccceeee---ecCcceEEEccccccc
Q psy9398 73 TGRRKSAIARVFI---KIGSGKMTINRIPADK 101 (154)
Q Consensus 73 ~grrK~a~aRv~i---~~G~g~i~vN~~~~~~ 101 (154)
+|-+|+.+.++-. .+.+|+|.+||+++..
T Consensus 35 nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~ 66 (173)
T cd03230 35 NGAGKTTLIKIILGLLKPDSGEIKVLGKDIKK 66 (173)
T ss_pred CCCCHHHHHHHHhCCCCCCCeEEEECCEEccc
Confidence 4677777777642 2567899999987654
No 82
>PF14419 SPOUT_MTase_2: AF2226-like SPOUT RNA Methylase fused to THUMP
Probab=25.80 E-value=1.4e+02 Score=23.30 Aligned_cols=42 Identities=24% Similarity=0.263 Sum_probs=35.1
Q ss_pred EEEeCCCCchhhHHHHHHHHHhCCCceEEeeeccccCCCCee
Q psy9398 3 FLIDAKNKILGRVASKIAVYLRGKHKTEYTPHIDTGYPGGIR 44 (154)
Q Consensus 3 ~viDa~~~~lGRlAs~vA~~L~Gk~k~~~~~~~d~gy~gg~k 44 (154)
+|.|-+|..+-+++...|+.|+....+++---+-.|.|.|+-
T Consensus 97 IvtdPkG~~is~vk~~L~~~~r~~~eV~v~iGSReGiP~Glf 138 (173)
T PF14419_consen 97 IVTDPKGDPISEVKDKLAEDLRYAKEVVVFIGSREGIPRGLF 138 (173)
T ss_pred EEECCCCCcHHHHHHHHHHHHhhCcEEEEEEEcccCCChhHH
Confidence 678999999999999999999988777776666678886654
No 83
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=23.56 E-value=60 Score=27.59 Aligned_cols=27 Identities=15% Similarity=0.267 Sum_probs=18.9
Q ss_pred ccccccccceeee---ecCcceEEEccccc
Q psy9398 73 TGRRKSAIARVFI---KIGSGKMTINRIPA 99 (154)
Q Consensus 73 ~grrK~a~aRv~i---~~G~g~i~vN~~~~ 99 (154)
+|-+|+.+.|+-. .|.+|+|.+||+++
T Consensus 39 sGsGKSTLLr~iaGl~~p~~G~I~i~g~~~ 68 (353)
T TIGR03265 39 SGCGKTTLLRIIAGLERQTAGTIYQGGRDI 68 (353)
T ss_pred CCCCHHHHHHHHHCCCCCCceEEEECCEEC
Confidence 4667777777653 35678888888765
No 84
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=23.49 E-value=45 Score=24.76 Aligned_cols=70 Identities=17% Similarity=0.131 Sum_probs=37.1
Q ss_pred ccccccccceeee---ecCcceEEEcccccccccCchHHHHHHhhHHHhhccCCceeeEEEeecCcccchhhHHHHHHHH
Q psy9398 73 TGRRKSAIARVFI---KIGSGKMTINRIPADKYFSRKTGLMVISQPLKLTKHTKTFDIKINVRGGGESGQYGAVRHGITR 149 (154)
Q Consensus 73 ~grrK~a~aRv~i---~~G~g~i~vN~~~~~~yf~~~~~~~~i~~Pl~~~~~~~~~di~~~v~GGG~~gQa~Air~aiar 149 (154)
+|-+|+.+.++-. .+.+|+|.+++..-.-|++.... ..+.++.+...-. ...-+|| -+.-|.++||
T Consensus 36 nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~----~~~~tv~~nl~~~------~~~~LS~-G~~~rv~lar 104 (166)
T cd03223 36 SGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPY----LPLGTLREQLIYP------WDDVLSG-GEQQRLAFAR 104 (166)
T ss_pred CCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCc----cccccHHHHhhcc------CCCCCCH-HHHHHHHHHH
Confidence 4667777766542 25678888888543334432211 1122222221100 2334444 3678999999
Q ss_pred HHhc
Q psy9398 150 AFNQ 153 (154)
Q Consensus 150 al~~ 153 (154)
||+.
T Consensus 105 al~~ 108 (166)
T cd03223 105 LLLH 108 (166)
T ss_pred HHHc
Confidence 9874
No 85
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=23.22 E-value=1.6e+02 Score=26.13 Aligned_cols=45 Identities=18% Similarity=0.111 Sum_probs=32.0
Q ss_pred HHHHHhhHH--Hhhc-cCCceeeEEEeecCcccchhhHHHHHHHHHHhc
Q psy9398 108 GLMVISQPL--KLTK-HTKTFDIKINVRGGGESGQYGAVRHGITRAFNQ 153 (154)
Q Consensus 108 ~~~~i~~Pl--~~~~-~~~~~di~~~v~GGG~~gQa~Air~aiaral~~ 153 (154)
.|..++.-+ .-.+ .+...||++++- ||+-=+--|.-+|||-||+.
T Consensus 336 ~r~~~~~Avl~k~~g~~~~~~di~vNl~-ggl~~~~~~~DLaia~ails 383 (454)
T TIGR00416 336 NRLALLLAVLEKRLGLPLADQDVFLNVA-GGVKVSEPAADLALLIAIVS 383 (454)
T ss_pred HHHHHHHHHHHHhcCCCCCCceEEEEcc-CCcccCCccccHHHHHHHHH
Confidence 466666665 4444 466889999999 77776767777777777753
No 86
>PF13605 DUF4141: Domain of unknown function (DUF4141)
Probab=22.89 E-value=35 Score=21.69 Aligned_cols=13 Identities=23% Similarity=0.465 Sum_probs=8.9
Q ss_pred CeEEEeCCCCchh
Q psy9398 1 MWFLIDAKNKILG 13 (154)
Q Consensus 1 ~w~viDa~~~~lG 13 (154)
+|+|+|..+---|
T Consensus 21 QWvV~DP~NlAQ~ 33 (55)
T PF13605_consen 21 QWVVTDPGNLAQN 33 (55)
T ss_pred EEEEeCchHHHHH
Confidence 6999997664333
No 87
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=22.75 E-value=2.4e+02 Score=26.02 Aligned_cols=46 Identities=20% Similarity=0.220 Sum_probs=30.3
Q ss_pred hHHHHHHhhHHHhh----c-cCCceeeEEEeecCcccchhhHHHHHHHHHHh
Q psy9398 106 KTGLMVISQPLKLT----K-HTKTFDIKINVRGGGESGQYGAVRHGITRAFN 152 (154)
Q Consensus 106 ~~~~~~i~~Pl~~~----~-~~~~~di~~~v~GGG~~gQa~Air~aiaral~ 152 (154)
...++.+..-+.++ + ....+||++++-||+ --.--+.=+|||-||+
T Consensus 487 ~e~kerv~~A~~~l~~~~g~~~~~~di~vnl~~~~-~k~gpsadLaia~ail 537 (615)
T TIGR02903 487 SMAKDSVFNAASVIRKITGKDLSNYDIHVNVIGGG-RIDGPSAGAAITLCMI 537 (615)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcCCCC-CCCCchHHHHHHHHHH
Confidence 34566676667633 3 466899999999876 4555555566666654
No 88
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=22.27 E-value=75 Score=25.71 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=18.8
Q ss_pred EEEeCCCCchhhHHHHHHHHHh
Q psy9398 3 FLIDAKNKILGRVASKIAVYLR 24 (154)
Q Consensus 3 ~viDa~~~~lGRlAs~vA~~L~ 24 (154)
+||||+||. +++++.+++++.
T Consensus 161 ~VVdATG~~-a~v~~~l~~~~~ 181 (254)
T TIGR00292 161 VVVDATGHD-AEIVAVCAKKIV 181 (254)
T ss_pred EEEEeecCC-chHHHHHHHHcC
Confidence 689999998 799999999975
No 89
>PF01808 AICARFT_IMPCHas: AICARFT/IMPCHase bienzyme; InterPro: IPR002695 This is a family of bifunctional enzymes catalysing the last two steps in de novo purine biosynthesis. The bifunctional enzyme is found in both prokaryotes and eukaryotes. The second last step is catalysed by 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase 2.1.2.3 from EC (AICARFT), this enzyme catalyses the formylation of AICAR with 10-formyl-tetrahydrofolate to yield FAICAR and tetrahydrofolate []. The last step is catalysed by IMP (Inosine monophosphate) cyclohydrolase 3.5.4.10 from EC (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide ribonucleotide) to IMP [].; GO: 0003937 IMP cyclohydrolase activity, 0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity, 0006164 purine nucleotide biosynthetic process; PDB: 1ZCZ_A 1PL0_D 1PKX_C 1P4R_B 1G8M_B 2IU3_B 2B1I_A 2B1G_D 1OZ0_B 1M9N_B ....
Probab=21.76 E-value=61 Score=27.63 Aligned_cols=43 Identities=28% Similarity=0.332 Sum_probs=28.0
Q ss_pred HHHHHHhhHHHhhccCCceeeEEEe-------ecCcccchhhHHHHHHHHH
Q psy9398 107 TGLMVISQPLKLTKHTKTFDIKINV-------RGGGESGQYGAVRHGITRA 150 (154)
Q Consensus 107 ~~~~~i~~Pl~~~~~~~~~di~~~v-------~GGG~~gQa~Air~aiara 150 (154)
.....+..-..+......-.| +.+ -|.|.+...+|+|+|+.||
T Consensus 266 ~e~~dL~FAwkv~k~vKSNAI-v~ak~~~tvGIGaGQ~sRVda~~iA~~KA 315 (315)
T PF01808_consen 266 EELEDLLFAWKVVKHVKSNAI-VLAKDGQTVGIGAGQMSRVDAARIAIEKA 315 (315)
T ss_dssp HHHHHHHHHHHHHHCSSSSEE-EEEETTEEEEEEESSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccceE-EEEeCCeEEEeCCCCcchHHHHHHHHhhC
Confidence 344445555555544333233 333 4789999999999999987
No 90
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=21.52 E-value=1.9e+02 Score=27.34 Aligned_cols=67 Identities=12% Similarity=0.117 Sum_probs=36.2
Q ss_pred eecCcceEEEcccccccccCchHHH--HHHhhHHHhhc----cCCceeeEEEeecCcccchhhHHHHHHHHHHh
Q psy9398 85 IKIGSGKMTINRIPADKYFSRKTGL--MVISQPLKLTK----HTKTFDIKINVRGGGESGQYGAVRHGITRAFN 152 (154)
Q Consensus 85 i~~G~g~i~vN~~~~~~yf~~~~~~--~~i~~Pl~~~~----~~~~~di~~~v~GGG~~gQa~Air~aiaral~ 152 (154)
+.+|.|.+.+.|.+-.. +.....+ .-+..-+.-.+ .+..+||.+++-+|.....--+.=+|||-||+
T Consensus 621 ~~~G~~~~~~tG~~~~~-~kES~~~a~~~v~~~~~~~~~~~~~~~~~di~v~~~~g~~~k~Gpsa~laia~al~ 693 (775)
T TIGR00763 621 KVAGKGSLELTGQLGDV-MKESAQIALTYVRSIAADLGISPNFFEKADIHLHVPEGATPKDGPSAGITMATALL 693 (775)
T ss_pred EeCCCceEEEeCCchHH-HHHHHHHHHHHHHHHHHHcCCCccccCCeEEEEEcCCcccCCCCCcchHHHHHHHH
Confidence 44788899999965432 2322111 11222222222 23678999999888766443444444444443
No 91
>PTZ00367 squalene epoxidase; Provisional
Probab=21.02 E-value=1.1e+02 Score=28.00 Aligned_cols=39 Identities=21% Similarity=0.232 Sum_probs=27.3
Q ss_pred HHHHHhhHHHhhccCCceeeEEEeecCcccchhhHHHHH
Q psy9398 108 GLMVISQPLKLTKHTKTFDIKINVRGGGESGQYGAVRHG 146 (154)
Q Consensus 108 ~~~~i~~Pl~~~~~~~~~di~~~v~GGG~~gQa~Air~a 146 (154)
..++++.-+.......+.+.++-|-|||++|-+-|+.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~dViIVGaGiaGlalA~aLa 53 (567)
T PTZ00367 15 LLNRILSRLRFKPARTNYDYDVIIVGGSIAGPVLAKALS 53 (567)
T ss_pred HHHHHHHHHccCccccccCccEEEECCCHHHHHHHHHHH
Confidence 445555555554444455677788999999999887665
Done!