Query psy9398
Match_columns 154
No_of_seqs 218 out of 1643
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 18:08:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9398.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9398hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2d_N 50S ribosomal protein L 100.0 7.7E-34 2.7E-38 211.4 3.7 89 1-91 12-128 (140)
2 2ftc_H L13MT, MRP-L13, 39S rib 100.0 2.1E-33 7.3E-38 210.9 5.2 88 1-90 17-132 (148)
3 3r8s_J 50S ribosomal protein L 100.0 1.4E-33 4.9E-38 210.4 3.7 89 1-91 14-130 (142)
4 2zjr_G 50S ribosomal protein L 100.0 9.1E-33 3.1E-37 211.7 5.5 96 1-98 40-163 (174)
5 3f1f_N 50S ribosomal protein L 100.0 3.9E-33 1.3E-37 211.6 1.0 91 1-93 35-153 (163)
6 3r8n_I 30S ribosomal protein S 100.0 8.3E-32 2.8E-36 197.4 3.8 84 71-154 4-87 (127)
7 2vqe_I 30S ribosomal protein S 100.0 1.1E-31 3.8E-36 197.0 3.9 84 71-154 5-88 (128)
8 3bbo_L Ribosomal protein L13; 100.0 2.2E-31 7.6E-36 212.5 1.1 96 1-98 113-236 (250)
9 2xzm_I RPS16E; ribosome, trans 100.0 3.1E-30 1.1E-34 192.8 5.0 83 71-154 10-94 (145)
10 3j20_K 30S ribosomal protein S 100.0 4.8E-30 1.6E-34 189.9 5.0 83 71-154 5-89 (135)
11 3u5c_Q RP61R, 40S ribosomal pr 100.0 1.4E-29 4.8E-34 189.1 6.4 83 71-154 8-92 (143)
12 2zkq_i 40S ribosomal protein S 100.0 8.9E-30 3.1E-34 190.6 3.7 83 71-154 11-95 (146)
13 3bbn_I Ribosomal protein S9; s 100.0 2.6E-29 9E-34 194.9 4.9 84 71-154 73-157 (197)
14 1j3a_A 50S ribosomal protein L 99.9 7.1E-27 2.4E-31 174.6 5.7 95 2-98 1-112 (142)
15 4b6a_O 60S ribosomal protein L 99.9 1.1E-27 3.8E-32 187.2 0.2 146 1-150 5-166 (199)
16 3iz6_I 40S ribosomal protein S 99.9 1.7E-29 5.8E-34 189.6 -12.8 83 71-154 14-98 (149)
17 1vq8_J 50S ribosomal protein L 99.9 5.1E-26 1.8E-30 170.3 5.6 87 1-92 8-110 (145)
18 4a17_I RPL13A, 60S ribosomal p 99.9 1.8E-25 6.3E-30 174.6 -1.2 143 1-150 4-165 (198)
19 3iz5_K 60S ribosomal protein L 99.9 9.7E-25 3.3E-29 171.4 -3.3 144 1-150 10-171 (206)
20 2zkr_j 60S ribosomal protein L 99.9 3E-24 1E-28 168.4 -2.3 143 1-150 5-166 (203)
21 3jyw_M 60S ribosomal protein L 99.8 9.3E-22 3.2E-26 151.6 2.8 97 3-100 1-113 (178)
22 4f4c_A Multidrug resistance pr 79.7 1.3 4.3E-05 42.6 3.7 79 72-153 1113-1234(1321)
23 2i9n_A MHB4A peptide; beta-hai 65.0 3.7 0.00013 21.9 1.8 18 133-150 14-31 (33)
24 4f4c_A Multidrug resistance pr 63.6 3.5 0.00012 39.6 2.5 80 72-153 452-571 (1321)
25 2i9o_A MHB8A peptide; beta-hai 57.9 6 0.00021 21.6 1.8 17 133-149 18-34 (37)
26 1rre_A ATP-dependent protease 45.1 37 0.0013 25.5 5.2 50 84-136 32-89 (200)
27 2x36_A LON protease homolog, m 37.9 36 0.0012 25.8 4.1 64 87-151 43-112 (207)
28 1hyu_A AHPF, alkyl hydroperoxi 33.3 47 0.0016 28.0 4.5 57 88-146 170-232 (521)
29 3m6a_A ATP-dependent protease 30.2 57 0.002 27.9 4.6 50 85-135 376-431 (543)
30 1xhk_A Putative protease LA ho 28.9 56 0.0019 24.1 3.8 15 121-135 76-90 (187)
31 1wh2_A Hypothetical protein AT 20.4 37 0.0013 21.9 1.2 13 1-13 19-31 (78)
No 1
>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ...
Probab=99.98 E-value=7.7e-34 Score=211.41 Aligned_cols=89 Identities=44% Similarity=0.727 Sum_probs=83.3
Q ss_pred CeEEEeCCCCchhhHHHHHHHHHhCCCceEEeeecc----------------------------ccCCCCeeeecccccc
Q psy9398 1 MWFLIDAKNKILGRVASKIAVYLRGKHKTEYTPHID----------------------------TGYPGGIRKINFLKMQ 52 (154)
Q Consensus 1 ~w~viDa~~~~lGRlAs~vA~~L~Gk~k~~~~~~~d----------------------------~gy~gg~k~~~~~~~~ 52 (154)
.|+||||+||+||||||+||++|+|||||+|+|+.| +|||||++++++++++
T Consensus 12 ~w~viDA~~~~LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVViNaeki~~tG~k~~~K~yy~htgypGglk~~~~~~~~ 91 (140)
T 3v2d_N 12 RWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTRYSGYPGGLKKIPLEKML 91 (140)
T ss_dssp CEEEEECSSSBTTHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEECGGGCBCCTTHHHHCEEEEECSSTTCEEEEEHHHHH
T ss_pred eEEEEeCCCCchHHHHHHHHHHHcCCCCCccCCCccCCCEEEEEeCcceEccCchhhheeeEEecccCCcceeccHHHhh
Confidence 599999999999999999999999999999999997 4799999999999999
Q ss_pred ccCchhHHHHhhhhhhcccCccccccccceeeeecCcce
Q psy9398 53 EDFPGRVLQKAVKVVNYKYGTGRRKSAIARVFIKIGSGK 91 (154)
Q Consensus 53 ~r~P~~Il~raV~gmlp~~~~grrK~a~aRv~i~~G~g~ 91 (154)
+++|++|+++||+||||++ .+++.++.|+++|+|+..
T Consensus 92 ~r~P~~ii~~aVrGMLPk~--~lgr~~l~rLkVy~G~~h 128 (140)
T 3v2d_N 92 ATHPERVLEHAVKGMLPKG--PLGRRLFKRLKVYAGPDH 128 (140)
T ss_dssp HHCTHHHHHHHHHHTSCSS--HHHHHHHHTEEECSSSCC
T ss_pred hhCHHHHHHHHHHhcCCCC--hhHHHHHhCCEEeCCCCC
Confidence 9999999999999999985 456788999999999863
No 2
>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=99.98 E-value=2.1e-33 Score=210.88 Aligned_cols=88 Identities=27% Similarity=0.483 Sum_probs=82.7
Q ss_pred CeEEEeCCCCchhhHHHHHHHHHhCCCceEEeeecc----------------------------ccCCCCeeeecccccc
Q psy9398 1 MWFLIDAKNKILGRVASKIAVYLRGKHKTEYTPHID----------------------------TGYPGGIRKINFLKMQ 52 (154)
Q Consensus 1 ~w~viDa~~~~lGRlAs~vA~~L~Gk~k~~~~~~~d----------------------------~gy~gg~k~~~~~~~~ 52 (154)
.|+||||+||+||||||+||++|+|||||+|+|+.| +|||||++++++++++
T Consensus 17 ~w~viDA~g~~LGRLAs~iA~~L~GKhKp~ytP~~D~Gd~VVViNaeki~~tG~k~~~K~yy~htg~pGg~k~~~~~~~~ 96 (148)
T 2ftc_H 17 IWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIMNTRHIAFSGNKWEQKVYSSHTGYPGGFRQVTAAQLH 96 (148)
T ss_pred cEEEEeCCCCchHHHHHHHHHHHhccCCCCcCccccCCCEEEEEeceeeEeccchHhhheeeeeeCCcCCceeccHHHHh
Confidence 599999999999999999999999999999999997 4799999999999999
Q ss_pred ccCchhHHHHhhhhhhcccCccccccccceeeeecCcc
Q psy9398 53 EDFPGRVLQKAVKVVNYKYGTGRRKSAIARVFIKIGSG 90 (154)
Q Consensus 53 ~r~P~~Il~raV~gmlp~~~~grrK~a~aRv~i~~G~g 90 (154)
+++|++|+++||+||||++ .+++.++.|+++|+|+.
T Consensus 97 ~r~P~~ii~~aVrGMLPkn--~lgr~~l~rLkVy~G~~ 132 (148)
T 2ftc_H 97 LRDPVAIVKLAIYGMLPKN--LHRRTMMERLHLFPDEY 132 (148)
T ss_pred hcCHHHHHHHHHHhcCCCC--chHHHHHhCcEEeCCCC
Confidence 9999999999999999986 45677899999999964
No 3
>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ...
Probab=99.97 E-value=1.4e-33 Score=210.44 Aligned_cols=89 Identities=40% Similarity=0.650 Sum_probs=83.2
Q ss_pred CeEEEeCCCCchhhHHHHHHHHHhCCCceEEeeecc----------------------------ccCCCCeeeecccccc
Q psy9398 1 MWFLIDAKNKILGRVASKIAVYLRGKHKTEYTPHID----------------------------TGYPGGIRKINFLKMQ 52 (154)
Q Consensus 1 ~w~viDa~~~~lGRlAs~vA~~L~Gk~k~~~~~~~d----------------------------~gy~gg~k~~~~~~~~ 52 (154)
.|+||||+||+||||||+||++|+|||||+|+|+.| +|||||++++++++++
T Consensus 14 ~W~viDA~g~~LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVViNaeki~~tG~k~~~K~yy~htgypGg~k~~~~~~~~ 93 (142)
T 3r8s_J 14 DWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMI 93 (142)
T ss_dssp CEEEEECTTCBHHHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEECGGGCBCCTTHHHHCBCCEECSSTTCEECCBHHHHH
T ss_pred cEEEEeCCCCchHHHHHHHHHHHcCCCCCccCCCccCCCEEEEEeCcccCccCchhhceEEEEecCcCCCccccCHHHHH
Confidence 599999999999999999999999999999999997 4799999999999999
Q ss_pred ccCchhHHHHhhhhhhcccCccccccccceeeeecCcce
Q psy9398 53 EDFPGRVLQKAVKVVNYKYGTGRRKSAIARVFIKIGSGK 91 (154)
Q Consensus 53 ~r~P~~Il~raV~gmlp~~~~grrK~a~aRv~i~~G~g~ 91 (154)
+++|++|+++||+||||++ .+++.++.|+++|+|+..
T Consensus 94 ~r~P~~ii~~aVrGMLPkn--~lgr~~l~rLkVy~G~~h 130 (142)
T 3r8s_J 94 ARRPERVIEIAVKGMLPKG--PLGRAMFRKLKVYAGNEH 130 (142)
T ss_dssp HHCSHHHHHHHHHHHSCSS--HHHHHHHTTEEECSSSCC
T ss_pred hhCHHHHHHHHHHhcCCCC--hhHHHHHhCCEEECCCCC
Confidence 9999999999999999965 456788999999999864
No 4
>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H* 1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G* 3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K
Probab=99.97 E-value=9.1e-33 Score=211.66 Aligned_cols=96 Identities=30% Similarity=0.493 Sum_probs=86.2
Q ss_pred CeEEEeCCCCchhhHHHHHHHHHhCCCceEEeeecc----------------------------ccCCCCeeeecccccc
Q psy9398 1 MWFLIDAKNKILGRVASKIAVYLRGKHKTEYTPHID----------------------------TGYPGGIRKINFLKMQ 52 (154)
Q Consensus 1 ~w~viDa~~~~lGRlAs~vA~~L~Gk~k~~~~~~~d----------------------------~gy~gg~k~~~~~~~~ 52 (154)
.|+||||+||+||||||+||++|+|||||+|+|+.| +|||||++++++++++
T Consensus 40 ~W~vIDA~g~~LGRLAs~IAk~L~GKhKP~ytP~~D~GD~VVVINAeki~lTG~K~~~K~yy~htgypGGlk~~~~~~~~ 119 (174)
T 2zjr_G 40 NWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKVYTRYTGYQGGLKTETAREAL 119 (174)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHHHCSSCSSCCSSSCCCCEEEEECCTTCBCSSCSSSSCEEEECCSSCSSCCEEEESTTT
T ss_pred cEEEEeCCCCchHHHHHHHHHHHhccCCCccCccccCCCEEEEEeCeeeEeccchhhceEEEEecCcCCCcccccHHHHh
Confidence 599999999999999999999999999999999997 4799999999999999
Q ss_pred ccCchhHHHHhhhhhhcccCccccccccceeeeecCcceEEEcccc
Q psy9398 53 EDFPGRVLQKAVKVVNYKYGTGRRKSAIARVFIKIGSGKMTINRIP 98 (154)
Q Consensus 53 ~r~P~~Il~raV~gmlp~~~~grrK~a~aRv~i~~G~g~i~vN~~~ 98 (154)
+++|++|+++||+||||++ .+++.++.|+++|+|+....-..+|
T Consensus 120 ~r~P~~Ii~~AVrGMLPkn--~lGr~~l~rLkVy~G~~hph~aqkp 163 (174)
T 2zjr_G 120 SKHPERVIEHAVFGMLPKG--RQGRAMHTRLKVYAGETHPHSAQKP 163 (174)
T ss_dssp TSCHHHHHHHHHGGGSCCS--HHHHHHHTTCEECSCSTGGGGSCCS
T ss_pred hcChHHHHHHHHHhcCCCC--hhHHHHHhCeEEECCCCCChhccCC
Confidence 9999999999999999975 4567789999999998644433333
No 5
>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N
Probab=99.97 E-value=3.9e-33 Score=211.58 Aligned_cols=91 Identities=43% Similarity=0.701 Sum_probs=84.2
Q ss_pred CeEEEeCCCCchhhHHHHHHHHHhCCCceEEeeecc----------------------------ccCCCCeeeecccccc
Q psy9398 1 MWFLIDAKNKILGRVASKIAVYLRGKHKTEYTPHID----------------------------TGYPGGIRKINFLKMQ 52 (154)
Q Consensus 1 ~w~viDa~~~~lGRlAs~vA~~L~Gk~k~~~~~~~d----------------------------~gy~gg~k~~~~~~~~ 52 (154)
.|+||||+||+||||||+||++|+|||||+|+|+.| +|||||++++++++++
T Consensus 35 ~W~VIDA~g~~LGRLAs~VAk~L~GKhKP~ytP~~D~GD~VVVINaekI~iTG~K~~~K~yy~htgypGglk~~t~~~~~ 114 (163)
T 3f1f_N 35 RWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTRYSGYPGGLKKIPLEKML 114 (163)
T ss_dssp CBCBBCCTTCBHHHHHHHHHHHHSCTTSTTCCTTTCCCCBCEECCGGGCBCSTTHHHHCEECCBCSSTTCBCCEEHHHHH
T ss_pred cEEEEeCCCCchHHHHHHHHHHHhcCCCCccCCcccCCCEEEEEeCcccccCCchhhheeeEEecCcCCcceeeehHHhh
Confidence 599999999999999999999999999999999987 4799999999999999
Q ss_pred ccCchhHHHHhhhhhhcccCccccccccceeeeecCcceEE
Q psy9398 53 EDFPGRVLQKAVKVVNYKYGTGRRKSAIARVFIKIGSGKMT 93 (154)
Q Consensus 53 ~r~P~~Il~raV~gmlp~~~~grrK~a~aRv~i~~G~g~i~ 93 (154)
+++|++|+++||+||||++ .+++.++.|+++|+|+....
T Consensus 115 ~r~P~~Ii~~AVrGMLPkn--~lGr~~l~rLkVY~G~~hPh 153 (163)
T 3f1f_N 115 ATHPERVLEHAVKGMLPKG--PLGRRLFKRLKVYAGPDHPH 153 (163)
T ss_dssp HSSCHHHHHHHHHTTSCSS--HHHHHHHHTCEECSSSCCCC
T ss_pred hcCHHHHHHHHHHhcCCCC--hhHHHHHhCCEEECCCCCCc
Confidence 9999999999999999986 45678899999999986433
No 6
>3r8n_I 30S ribosomal protein S9; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_I 3fih_I* 3iy8_I 3j18_I* 2wwl_I 3oar_I 3oaq_I 3ofb_I 3ofa_I 3ofp_I 3ofx_I 3ofy_I 3ofo_I 3r8o_I 4a2i_I 4gd1_I 4gd2_I 2qal_I* 1p6g_I 1p87_I ...
Probab=99.97 E-value=8.3e-32 Score=197.44 Aligned_cols=84 Identities=56% Similarity=0.921 Sum_probs=81.6
Q ss_pred cCccccccccceeeeecCcceEEEcccccccccCchHHHHHHhhHHHhhccCCceeeEEEeecCcccchhhHHHHHHHHH
Q psy9398 71 YGTGRRKSAIARVFIKIGSGKMTINRIPADKYFSRKTGLMVISQPLKLTKHTKTFDIKINVRGGGESGQYGAVRHGITRA 150 (154)
Q Consensus 71 ~~~grrK~a~aRv~i~~G~g~i~vN~~~~~~yf~~~~~~~~i~~Pl~~~~~~~~~di~~~v~GGG~~gQa~Air~aiara 150 (154)
+.+|+||+|.|||++.+|+|+|+|||+|+++||+++.+++++++||.+++.+++|||.|+|+|||+||||+|||||||||
T Consensus 4 ~~~GrRKtavArv~l~~G~G~i~VNg~~l~~yf~~~~~r~~v~~Pl~~~~~~~~~Di~v~V~GGG~~gQa~Air~aIarA 83 (127)
T 3r8n_I 4 YGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEKLDLYITVKGGGISGQAGAIRHGITRA 83 (127)
T ss_dssp EECCCCTTCEEEEEEEESCSCEEETTBCSTTTTTTSTTTTTTTGGGSSSCCSSSEEEEEEEESSCHHHHHHHHHHHHHTT
T ss_pred eeECCCeeEEEEEEEEeCcEEEEECCEeHHHHcCCHHHHHHHHHHHHHhCccCccceEEEEECCCeecHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcC
Q psy9398 151 FNQL 154 (154)
Q Consensus 151 l~~~ 154 (154)
|++|
T Consensus 84 L~~~ 87 (127)
T 3r8n_I 84 LMEY 87 (127)
T ss_dssp TTTT
T ss_pred HHHH
Confidence 9975
No 7
>2vqe_I 30S ribosomal protein S9, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.14.1.1 PDB: 1gix_L* 1hnw_I* 1hnx_I* 1hnz_I* 1hr0_I 1i94_I* 1i95_I* 1i96_I* 1i97_I* 1ibk_I* 1ibl_I* 1ibm_I 1j5e_I 1jgo_L* 1jgp_L* 1jgq_L* 1ml5_L* 1n32_I* 1n33_I* 1n34_I ...
Probab=99.97 E-value=1.1e-31 Score=197.01 Aligned_cols=84 Identities=45% Similarity=0.749 Sum_probs=81.2
Q ss_pred cCccccccccceeeeecCcceEEEcccccccccCchHHHHHHhhHHHhhccCCceeeEEEeecCcccchhhHHHHHHHHH
Q psy9398 71 YGTGRRKSAIARVFIKIGSGKMTINRIPADKYFSRKTGLMVISQPLKLTKHTKTFDIKINVRGGGESGQYGAVRHGITRA 150 (154)
Q Consensus 71 ~~~grrK~a~aRv~i~~G~g~i~vN~~~~~~yf~~~~~~~~i~~Pl~~~~~~~~~di~~~v~GGG~~gQa~Air~aiara 150 (154)
+.+|+||+|.|||++.+|+|+|+|||+|+++||+++.+++++++||.+++.+++|||.|+|+|||+||||+|||||||||
T Consensus 5 ~~~GrRKtavArv~l~~G~G~i~VNg~~l~~yf~~~~~r~~v~~Pl~~~~~~~~~Di~v~V~GGG~sgQA~AiR~gIarA 84 (128)
T 2vqe_I 5 YGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGRFDAYITVRGGGKSGQIDAIKLGIARA 84 (128)
T ss_dssp EECCEETTEEEEEEEEESSCCEEESSSBHHHHSSSCSSGGGGGHHHHHHTCSTTEEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred EEeCcCCCEEEEEEEEcCceEEEECCCcHHHHcCCHHHHHHHHhHHHHHcccCceeEEEEEEcCCeehHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcC
Q psy9398 151 FNQL 154 (154)
Q Consensus 151 l~~~ 154 (154)
|++|
T Consensus 85 L~~~ 88 (128)
T 2vqe_I 85 LVQY 88 (128)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9974
No 8
>3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=99.96 E-value=2.2e-31 Score=212.52 Aligned_cols=96 Identities=32% Similarity=0.600 Sum_probs=86.0
Q ss_pred CeEEEeCCCCchhhHHHHHHHHHhCCCceEEeeecc----------------------------ccCCCCeeeecccccc
Q psy9398 1 MWFLIDAKNKILGRVASKIAVYLRGKHKTEYTPHID----------------------------TGYPGGIRKINFLKMQ 52 (154)
Q Consensus 1 ~w~viDa~~~~lGRlAs~vA~~L~Gk~k~~~~~~~d----------------------------~gy~gg~k~~~~~~~~ 52 (154)
.||||||+||+||||||+||++|+|||||+|+|+.| +|||||++++++++++
T Consensus 113 ~W~VIDA~g~vLGRLAS~IAk~LrGKhKP~ytP~vD~GD~VVVINAeKI~lTG~K~~~K~Y~rHsgyPGGlK~~t~~~l~ 192 (250)
T 3bbo_L 113 KWYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQKLYRRHSGRPGGLKEETFDQLQ 192 (250)
T ss_dssp CCCEECCSSCCSSTTHHHHTTTTTTTTTTCCCTTSCCSCCCEESCCSSCCCCSGGGGTCCCBCCCSSSSCCCBCCHHHHT
T ss_pred eEEEEeCCCCchHHHHHHHHHHHccCCCCccCccccCCCEEEEEecceEEecCChhhceEEEEecCcCCCcccccHHHhh
Confidence 599999999999999999999999999999999997 4799999999999999
Q ss_pred ccCchhHHHHhhhhhhcccCccccccccceeeeecCcceEEEcccc
Q psy9398 53 EDFPGRVLQKAVKVVNYKYGTGRRKSAIARVFIKIGSGKMTINRIP 98 (154)
Q Consensus 53 ~r~P~~Il~raV~gmlp~~~~grrK~a~aRv~i~~G~g~i~vN~~~ 98 (154)
+++|++|+++||+||||+++ +++.++.|+++|+|.....-..+|
T Consensus 193 ~r~PerIi~kAVrGMLPkn~--lGr~~lkrLkVY~G~~HPh~aQkp 236 (250)
T 3bbo_L 193 KRIPERIIEHAVRGMLPKGR--LGRYLFNHLKVYKGAEHPHQAQQP 236 (250)
T ss_dssp TSCTTHHHHHHHHTTSCSSS--SHHHHHTTCCCCSSSCCSCTTSCC
T ss_pred hcChHHHHHHHHHhcCCCCc--hHHHHHhCcEEeCCCCCCHHHcCC
Confidence 99999999999999999864 567789999999998644433333
No 9
>2xzm_I RPS16E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_I
Probab=99.96 E-value=3.1e-30 Score=192.79 Aligned_cols=83 Identities=28% Similarity=0.438 Sum_probs=79.9
Q ss_pred cCccccccccceeeeecCcceEEEcccccccccCchHHHHHHhhHHHhhc--cCCceeeEEEeecCcccchhhHHHHHHH
Q psy9398 71 YGTGRRKSAIARVFIKIGSGKMTINRIPADKYFSRKTGLMVISQPLKLTK--HTKTFDIKINVRGGGESGQYGAVRHGIT 148 (154)
Q Consensus 71 ~~~grrK~a~aRv~i~~G~g~i~vN~~~~~~yf~~~~~~~~i~~Pl~~~~--~~~~~di~~~v~GGG~~gQa~Air~aia 148 (154)
..+||||+|.|||++.+|+|+|+|||+|++ ||+++.+++++++||.+++ .+++|||.|+|+|||+||||+|||||||
T Consensus 10 ~~~GrRKtAvArv~l~~G~G~i~VNg~~l~-yf~~~~~r~~v~~Pl~l~~~~~~~~~Di~v~V~GGG~sgQA~AiR~aIA 88 (145)
T 2xzm_I 10 QTFGRKKNAVAVASVRPGKGLLKVNGSPID-MINPQILQAKIYEPILLLGQQKFANLDIRIRVRGSGYTSQVYAIRQALS 88 (145)
T ss_dssp EEEEEETTEEEEEEEEESSCEEEESSSBGG-GCSSTTTHHHHHHHHHHHCHHHHHHEEEEEEECCSSHHHHHHHHHHHHH
T ss_pred EEEeECCCEEEEEEEEeCceEEEECCEeHH-HcCcHHHHHHHHHHHHHhChhhhCceeEEEEEEcCCeecHHHHHHHHHH
Confidence 467999999999999999999999999999 9999999999999999998 7999999999999999999999999999
Q ss_pred HHHhcC
Q psy9398 149 RAFNQL 154 (154)
Q Consensus 149 ral~~~ 154 (154)
|||++|
T Consensus 89 rAL~~~ 94 (145)
T 2xzm_I 89 KGIVAY 94 (145)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999974
No 10
>3j20_K 30S ribosomal protein S9P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.96 E-value=4.8e-30 Score=189.94 Aligned_cols=83 Identities=37% Similarity=0.534 Sum_probs=78.3
Q ss_pred cCccccccccceeeeecCcceEEEcccccccccCchHHHHHHhhHHHhhc--cCCceeeEEEeecCcccchhhHHHHHHH
Q psy9398 71 YGTGRRKSAIARVFIKIGSGKMTINRIPADKYFSRKTGLMVISQPLKLTK--HTKTFDIKINVRGGGESGQYGAVRHGIT 148 (154)
Q Consensus 71 ~~~grrK~a~aRv~i~~G~g~i~vN~~~~~~yf~~~~~~~~i~~Pl~~~~--~~~~~di~~~v~GGG~~gQa~Air~aia 148 (154)
+.+|+||+|.|||++.+|+|+|+|||+|+++||+ +.+++++++||.+++ .+++|||.|+|+|||+||||+|||||||
T Consensus 5 ~~~GrRKtAvArv~l~~G~G~i~VNg~~l~~y~~-~~~r~~i~~Pl~l~~~~~~~~~Di~v~V~GGG~~gQA~AiR~aIa 83 (135)
T 3j20_K 5 QTTGKRKTAIARAVIREGKGRVRINGKPVEIIEP-EIARFTILEPLILAGEEIWNSVDIDVKVEGGGFMGQAEAARMAIA 83 (135)
T ss_dssp EEEEEETTEEEEEEEEESSCCEEETTEEGGGCSC-SHHHHHHSHHHHHHCHHHHHHEEEEEEEECSCHHHHHHHHHHHHH
T ss_pred EEeCcCccEEEEEEEEeCceEEEECCeeHHHHCh-HHHHHHhhCChhhcchhhcccccEEEEEECCCEechHhHHHHHHH
Confidence 3679999999999999999999999999998765 789999999999998 8999999999999999999999999999
Q ss_pred HHHhcC
Q psy9398 149 RAFNQL 154 (154)
Q Consensus 149 ral~~~ 154 (154)
|||++|
T Consensus 84 rAL~~~ 89 (135)
T 3j20_K 84 RALVEW 89 (135)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999874
No 11
>3u5c_Q RP61R, 40S ribosomal protein S16-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_I 3o30_J 3o2z_J 3u5g_Q 1s1h_I 3jyv_I*
Probab=99.96 E-value=1.4e-29 Score=189.05 Aligned_cols=83 Identities=28% Similarity=0.397 Sum_probs=77.8
Q ss_pred cCccccccccceeeeecCcceEEEcccccccccCchHHHHHHhhHHHhhcc--CCceeeEEEeecCcccchhhHHHHHHH
Q psy9398 71 YGTGRRKSAIARVFIKIGSGKMTINRIPADKYFSRKTGLMVISQPLKLTKH--TKTFDIKINVRGGGESGQYGAVRHGIT 148 (154)
Q Consensus 71 ~~~grrK~a~aRv~i~~G~g~i~vN~~~~~~yf~~~~~~~~i~~Pl~~~~~--~~~~di~~~v~GGG~~gQa~Air~aia 148 (154)
..+||||+|.|||++.+|+|+|+|||+|+++||+. .+++++++||.+++. +++|||.|+|+|||+||||+|||||||
T Consensus 8 ~~~GrRKtAvArv~l~~G~G~i~VNg~~l~~y~~~-~~r~~v~~Pl~l~~~~~~~~~Di~v~V~GGG~sgQA~AiR~aIA 86 (143)
T 3u5c_Q 8 QTFGKKKSATAVAHVKAGKGLIKVNGSPITLVEPE-ILRFKVYEPLLLVGLDKFSNIDIRVRVTGGGHVSQVYAIRQAIA 86 (143)
T ss_dssp EEEECSTTCEEEEEEEECSCCEEETTEETTTCSSC-STHHHHHHHHHHTCSTTSTTEEEEEEEESSCHHHHHHHHHHHHH
T ss_pred EEeccCcceEEEEEEEeCceEEEECCCcHHHHChH-HHHHHHHHHHHHHhhhccCceeEEEEEECCCEecHHhHHHHHHH
Confidence 36799999999999999999999999999999884 789999999999975 599999999999999999999999999
Q ss_pred HHHhcC
Q psy9398 149 RAFNQL 154 (154)
Q Consensus 149 ral~~~ 154 (154)
|||++|
T Consensus 87 rAL~~~ 92 (143)
T 3u5c_Q 87 KGLVAY 92 (143)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999974
No 12
>2zkq_i 40S ribosomal protein S16E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.95 E-value=8.9e-30 Score=190.59 Aligned_cols=83 Identities=29% Similarity=0.424 Sum_probs=78.9
Q ss_pred cCccccccccceeeeecCcceEEEcccccccccCchHHHHHHhhHHHhhc--cCCceeeEEEeecCcccchhhHHHHHHH
Q psy9398 71 YGTGRRKSAIARVFIKIGSGKMTINRIPADKYFSRKTGLMVISQPLKLTK--HTKTFDIKINVRGGGESGQYGAVRHGIT 148 (154)
Q Consensus 71 ~~~grrK~a~aRv~i~~G~g~i~vN~~~~~~yf~~~~~~~~i~~Pl~~~~--~~~~~di~~~v~GGG~~gQa~Air~aia 148 (154)
..+|+||+|.|||++.+|+|+|+|||+|+ +||+++.+++++++||.+++ .+++|||.|+|+|||+||||+|||||||
T Consensus 11 ~~~GrRKtAvArv~l~~G~G~i~VNg~~l-eyf~~~~~r~~v~~Pl~l~~~~~~~~~Di~v~V~GGG~sgQA~AiR~aIA 89 (146)
T 2zkq_i 11 QVFGRKKTATAVAHCKRGNGLIKVNGRPL-EMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSIS 89 (146)
T ss_dssp EECCBCSSCEEEEEEEESSSCEEETTEEH-HHHSTTSCCGGGGHHHHHTSSCTTSSEEEEEEEESSCHHHHHHHHHHHHH
T ss_pred EEEeeCCCeEEEEEEEcCCeeEEEcCcCH-HHcCcHHHHHHHHHHHHHhCccccCceEEEEEEEcCCeehHHHHHHHHHH
Confidence 46799999999999999999999999999 69999999999999999998 4699999999999999999999999999
Q ss_pred HHHhcC
Q psy9398 149 RAFNQL 154 (154)
Q Consensus 149 ral~~~ 154 (154)
|||++|
T Consensus 90 rAL~~~ 95 (146)
T 2zkq_i 90 KALVAY 95 (146)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999974
No 13
>3bbn_I Ribosomal protein S9; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.95 E-value=2.6e-29 Score=194.94 Aligned_cols=84 Identities=38% Similarity=0.596 Sum_probs=79.2
Q ss_pred cCccccccccceeeeecCcceEEEcccccccccC-chHHHHHHhhHHHhhccCCceeeEEEeecCcccchhhHHHHHHHH
Q psy9398 71 YGTGRRKSAIARVFIKIGSGKMTINRIPADKYFS-RKTGLMVISQPLKLTKHTKTFDIKINVRGGGESGQYGAVRHGITR 149 (154)
Q Consensus 71 ~~~grrK~a~aRv~i~~G~g~i~vN~~~~~~yf~-~~~~~~~i~~Pl~~~~~~~~~di~~~v~GGG~~gQa~Air~aiar 149 (154)
+.+||||++.|||++.+|+|+|+|||+|+++||+ ....++++++||.+++.+++|||.|+|+|||+||||+||||||||
T Consensus 73 ~~tGRRKtAvArV~l~~G~G~I~VNg~~l~~YF~~~~~~~~~v~~PL~l~~~~~k~DI~v~V~GGG~sGQA~AIR~gIAR 152 (197)
T 3bbn_I 73 IGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYVKTPLATLGYETNYDVFVKAHGGGLSGQAQAISLGVAR 152 (197)
T ss_dssp CCCCEETTEEEEEEEEESSCCEEETTEEHHHHSCSCCGGGTTTSHHHHTTTCTTTEEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred EEEeeCCceEEEEEEEcCceeEEECCCcHHHHcCccHHHHHHHHHHHHHhCccCceeEEEEEecCCeehHHHHHHHHHHH
Confidence 4679999999999999999999999999999997 455667999999999999999999999999999999999999999
Q ss_pred HHhcC
Q psy9398 150 AFNQL 154 (154)
Q Consensus 150 al~~~ 154 (154)
||++|
T Consensus 153 ALv~~ 157 (197)
T 3bbn_I 153 ALLKV 157 (197)
T ss_dssp HTTTS
T ss_pred HHHHH
Confidence 99976
No 14
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Probab=99.93 E-value=7.1e-27 Score=174.61 Aligned_cols=95 Identities=17% Similarity=0.144 Sum_probs=70.5
Q ss_pred eEEEeCCCCchhhHHHHHHHHHhCCCceEEeeecc----------------ccCCCCeee-eccccccccCchhHHHHhh
Q psy9398 2 WFLIDAKNKILGRVASKIAVYLRGKHKTEYTPHID----------------TGYPGGIRK-INFLKMQEDFPGRVLQKAV 64 (154)
Q Consensus 2 w~viDa~~~~lGRlAs~vA~~L~Gk~k~~~~~~~d----------------~gy~gg~k~-~~~~~~~~r~P~~Il~raV 64 (154)
|+||||+||+||||||+||++|+-++.+++.++++ +|||||++. .+ +++++++|++|+++||
T Consensus 1 W~viDA~g~~LGRLAs~vAk~L~~Gd~VVViNaeki~iTG~k~~~K~yy~h~g~~gg~~~~~~-~~~~~r~P~~ii~~aV 79 (142)
T 1j3a_A 1 MRIINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRR-GPFYPKRSDEIVRRTI 79 (142)
T ss_dssp CEEEECTTBBHHHHHHHHHHHHHTTCCEEEECGGGCEEESCHHHHHHHHHHHC--------------CCCSHHHHHHHHH
T ss_pred CEEEeCCCCchHHHHHHHHHHHhcCCEEEEEeCeeeEecccHHhheeeeeecCCCCCCcCCcc-CcccccCHHHHHHHHH
Confidence 99999999999999999999999777777777764 799999776 77 9999999999999999
Q ss_pred hhhhcccCccccccccceeeeecCcceEEEcccc
Q psy9398 65 KVVNYKYGTGRRKSAIARVFIKIGSGKMTINRIP 98 (154)
Q Consensus 65 ~gmlp~~~~grrK~a~aRv~i~~G~g~i~vN~~~ 98 (154)
+||||+ ++.+++.++.|+++|+|++...-..+|
T Consensus 80 rGMLP~-k~~lgr~~l~rLkVy~G~~hp~~aqkp 112 (142)
T 1j3a_A 80 RGMLPW-KTDRGRKAFRRLKVYVGIPKEFQDKQL 112 (142)
T ss_dssp HTTTTT-TSHHHHHHHTTEEECSSCCGGGTTSCC
T ss_pred HhhccC-CCHHHHHHHhCcEEeCCCCCCccccCc
Confidence 999994 235668899999999998754444444
No 15
>4b6a_O 60S ribosomal protein L16-A; large ribosomal subunit, ribosome biogenesis, ribosome matur factor, ribosome; 8.10A {Saccharomyces cerevisiae} PDB: 3izc_K 3izs_K 3o58_P 3o5h_P 3u5e_O 3u5i_O 1s1i_M
Probab=99.93 E-value=1.1e-27 Score=187.19 Aligned_cols=146 Identities=19% Similarity=0.104 Sum_probs=113.9
Q ss_pred CeEEEeCCCCchhhHHHHHHHHHhCCCceEEeeecc----------------ccCCCCeeeeccccccccCchhHHHHhh
Q psy9398 1 MWFLIDAKNKILGRVASKIAVYLRGKHKTEYTPHID----------------TGYPGGIRKINFLKMQEDFPGRVLQKAV 64 (154)
Q Consensus 1 ~w~viDa~~~~lGRlAs~vA~~L~Gk~k~~~~~~~d----------------~gy~gg~k~~~~~~~~~r~P~~Il~raV 64 (154)
.|+||||+||+||||||+||+.|++++.+++.++++ +||||+++..+++++++++|++||++||
T Consensus 5 ~~vVIDA~g~vLGRLAS~VAk~L~~Gd~VVVVNaeki~iTG~k~~~K~yy~h~g~~gg~~~~~~~~~~~r~P~~il~~aV 84 (199)
T 4b6a_O 5 PVVVIDAKDHLLGRLASTIAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRILYKAI 84 (199)
T ss_dssp SEEEEECTTBBHHHHHHHHHHHHHTTCEEEEECGGGCEEESCHHHHHHHHHHHHTCCCTTCTTTSCCCCCSHHHHHHHHH
T ss_pred CEEEEECCCCchHHHHHHHHHHhcCCCEEEEEEchheEEeCcHHHHHHHhhccccccccccCCHHHHhhcCcHHHHHHHH
Confidence 499999999999999999999999999999998884 6899999999999999999999999999
Q ss_pred hhhhcccCccccccccceeeeecCcceEEEcccccccccCchHHHHHHhhHHHhhccCCceeeEEEeecCcccchhhHHH
Q psy9398 65 KVVNYKYGTGRRKSAIARVFIKIGSGKMTINRIPADKYFSRKTGLMVISQPLKLTKHTKTFDIKINVRGGGESGQYGAVR 144 (154)
Q Consensus 65 ~gmlp~~~~grrK~a~aRv~i~~G~g~i~vN~~~~~~yf~~~~~~~~i~~Pl~~~~~~~~~di~~~v~GGG~~gQa~Air 144 (154)
+||||+ ++.+++.++.|+++|+|.+...-..+++. +|. .++...+.|-.---+++.+.-.+.|+-..++.+.++-|
T Consensus 85 rGMLP~-K~~lGr~~l~rLkVy~G~~hph~aqk~~v--vp~-Al~~~~lkp~~Ky~~lg~ls~~~Gwk~~~vv~~le~kr 160 (199)
T 4b6a_O 85 RGMVSH-KTARGKAALERLKIFEGIPPPYDKKKRVV--VPQ-ALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEAKR 160 (199)
T ss_dssp HTTSCT-TSHHHHHHHHTEEECSSCCSGGGGSCCBB--CGG-GBHHHHSCTTCCEEEHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred hccCCC-CChhhhHHHhccEEeCCCCCCcccCCCEe--cch-HHHhhccCCCCCeEEhhhhHHHhCccHHHHHHHHHHHH
Confidence 999995 33567889999999999976665556644 442 23333344432112233334556678888888888888
Q ss_pred HHHHHH
Q psy9398 145 HGITRA 150 (154)
Q Consensus 145 ~aiara 150 (154)
.+-|..
T Consensus 161 k~k~~~ 166 (199)
T 4b6a_O 161 KVRSAE 166 (199)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776653
No 16
>3iz6_I 40S ribosomal protein S16 (S9P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.92 E-value=1.7e-29 Score=189.64 Aligned_cols=83 Identities=30% Similarity=0.486 Sum_probs=68.9
Q ss_pred cCccccccccceeeeecCcceEEEcccccccccCchHHHHHHhhHHHhhcc--CCceeeEEEeecCcccchhhHHHHHHH
Q psy9398 71 YGTGRRKSAIARVFIKIGSGKMTINRIPADKYFSRKTGLMVISQPLKLTKH--TKTFDIKINVRGGGESGQYGAVRHGIT 148 (154)
Q Consensus 71 ~~~grrK~a~aRv~i~~G~g~i~vN~~~~~~yf~~~~~~~~i~~Pl~~~~~--~~~~di~~~v~GGG~~gQa~Air~aia 148 (154)
..+||||+|.||+++.+|+|+|+|||+|+++||+ +.+++++++||.+++. +++|||.|+|+|||+||||+|||||||
T Consensus 14 ~~~GrRKtAvArv~l~~G~G~i~VNg~~l~~y~~-~~~r~~v~~Pl~l~~~~~~~~~DI~v~V~GGG~sgQA~AiR~gIA 92 (149)
T 3iz6_I 14 QCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRP-EMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIA 92 (149)
T ss_dssp ----------CCCCCCCCCCSSSEECCCCCCSSC-CEEESSSBHHHHTCSCHHHHHHHTTTTTTSCSTTCCEEECEESSC
T ss_pred EEeccCcceEEEEEEEeCcEEEEECCCcHHHHCh-HHHHHHHHHHHHHHhHhccCceeEEEEEeCCCeecHHHHHHHHHH
Confidence 4679999999999999999999999999999988 4788999999999985 489999999999999999999999999
Q ss_pred HHHhcC
Q psy9398 149 RAFNQL 154 (154)
Q Consensus 149 ral~~~ 154 (154)
|||++|
T Consensus 93 rALv~~ 98 (149)
T 3iz6_I 93 KALVAY 98 (149)
T ss_dssp TTTHHH
T ss_pred HHHHHH
Confidence 999874
No 17
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Probab=99.92 E-value=5.1e-26 Score=170.29 Aligned_cols=87 Identities=17% Similarity=0.172 Sum_probs=76.6
Q ss_pred CeEEEeCCCCchhhHHHHHHHHHhCCCceEEeeecc----------------ccCCCCeeeeccccccccCchhHHHHhh
Q psy9398 1 MWFLIDAKNKILGRVASKIAVYLRGKHKTEYTPHID----------------TGYPGGIRKINFLKMQEDFPGRVLQKAV 64 (154)
Q Consensus 1 ~w~viDa~~~~lGRlAs~vA~~L~Gk~k~~~~~~~d----------------~gy~gg~k~~~~~~~~~r~P~~Il~raV 64 (154)
.|+||||+||+||||||+||++|+-++.+++.++++ +||||+ +++++++++|++|+++||
T Consensus 8 ~w~viDA~g~~LGRLAs~vAk~L~~Gd~VVViNaeki~iTG~k~~~K~yy~htg~~g~----~~~~~~~r~P~~i~~~aV 83 (145)
T 1vq8_J 8 ADVIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGREEQIVEKYEKRVDIGN----DNGYFYPKRPDGIFKRTI 83 (145)
T ss_dssp CSEEEECTTBBHHHHHHHHHHHHHTTCCEEEECGGGCEEESCHHHHHHHHHHHHHCCC----SSCCCCCCSHHHHHHHHH
T ss_pred cEEEEeCCCCchHHHHHHHHHHHhcCCEEEEEeCEeeEecchhhhheeeeEEeCCCCC----CHHHHhhcChHHHHHHHH
Confidence 599999999999999999999999777777777774 689998 789999999999999999
Q ss_pred hhhhcccCccccccccceeeeecCcceE
Q psy9398 65 KVVNYKYGTGRRKSAIARVFIKIGSGKM 92 (154)
Q Consensus 65 ~gmlp~~~~grrK~a~aRv~i~~G~g~i 92 (154)
+||||+ ++.+++.++.|+++|+|++..
T Consensus 84 rGMLP~-K~~lgr~~l~rLkVy~G~~~p 110 (145)
T 1vq8_J 84 RGMLPH-KKQRGREAFESVRVYLGNPYD 110 (145)
T ss_dssp HTTTTT-TSHHHHHHHHTEEECSSCCSS
T ss_pred HhhcCC-CCHHHHHHHhCeEEECCCCCC
Confidence 999994 235677899999999998655
No 18
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I
Probab=99.89 E-value=1.8e-25 Score=174.64 Aligned_cols=143 Identities=15% Similarity=-0.001 Sum_probs=102.5
Q ss_pred CeEEEeCCCCchhhHHHHHHHHHhCCCceEEeeeccc----------------cCCCCeeeeccccccccCchhHHHHhh
Q psy9398 1 MWFLIDAKNKILGRVASKIAVYLRGKHKTEYTPHIDT----------------GYPGGIRKINFLKMQEDFPGRVLQKAV 64 (154)
Q Consensus 1 ~w~viDa~~~~lGRlAs~vA~~L~Gk~k~~~~~~~d~----------------gy~gg~k~~~~~~~~~r~P~~Il~raV 64 (154)
.|+||||+||+||||||+||+.|+-++.+++.++++. .++++..+.+++++|+++|++||++||
T Consensus 4 ~w~VIDA~g~~LGRLAs~VAk~L~~GD~VVVINAekI~iTG~K~~~K~yy~~~l~~~~~~~~~~g~~~~r~P~rIi~~AV 83 (198)
T 4a17_I 4 KLVVIDAKGHLLGRLASYVAKELLSGQRIVVVRTEAINISGSLFRNRVKFSEFLNKWMNHNPRRGVQHFRAPSRIFWRAV 83 (198)
T ss_dssp SCEEEECTTBBHHHHHHHHHHHHHTTCCEEEECGGGCEEESCHHHHHHHHHHHHTCCCSSCTTSSCCCCCSHHHHHHHHH
T ss_pred cEEEEeCCCCchHHHHHHHHHHHhCCCEEEEEcCccccccCchhhheeeeeeccccccCCCCccccccccCHHHHHHHHH
Confidence 5999999999999999999999997777777777752 235555555578999999999999999
Q ss_pred hhhhcccCccccccccceeeeecCcceEEEcccccccccCchHHHHHHhhH---HHhhccCCceeeEEEeecCcccchhh
Q psy9398 65 KVVNYKYGTGRRKSAIARVFIKIGSGKMTINRIPADKYFSRKTGLMVISQP---LKLTKHTKTFDIKINVRGGGESGQYG 141 (154)
Q Consensus 65 ~gmlp~~~~grrK~a~aRv~i~~G~g~i~vN~~~~~~yf~~~~~~~~i~~P---l~~~~~~~~~di~~~v~GGG~~gQa~ 141 (154)
+||||++ +.+++.++.|+++|+|++...-..+.+. +|.. ++..-+.| +..++ .+.=.+.|+-.-++...+
T Consensus 84 rGMLPkK-~~lGr~~l~rLkVy~G~~hph~aqk~~v--vp~a-l~v~rl~~~rk~~~lg---~ls~~~Gwk~~~vv~~le 156 (198)
T 4a17_I 84 RGMLPHK-TPKGAAALERLKIFEGIPTPYDRVKKQV--VVDA-LKVQRLRNSRPVCKLG---DLSASVGWGKQTLIEKLE 156 (198)
T ss_dssp HTTTTTT-SHHHHHHHHHCEECSSCCGGGTTSCCBC--CGGG-BHHHHSCTTSCEEEHH---HHHHHTTCTTHHHHHHHH
T ss_pred hccCCCC-ChhHHHHHhCcEEecCCCCChhhccccc--cchH-hhhhhcCCCCCeEEHH---HHHHHhCchHHHHHHHHH
Confidence 9999962 2566789999999999875443333333 4422 22222333 33333 223344577788888888
Q ss_pred HHHHHHHHH
Q psy9398 142 AVRHGITRA 150 (154)
Q Consensus 142 Air~aiara 150 (154)
+-|.+-|..
T Consensus 157 ~krk~k~~~ 165 (198)
T 4a17_I 157 EKRRARAKT 165 (198)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877654
No 19
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_K
Probab=99.87 E-value=9.7e-25 Score=171.37 Aligned_cols=144 Identities=16% Similarity=0.143 Sum_probs=99.2
Q ss_pred CeEEEeCCCCchhhHHHHHHHHHhCCCceEEeeeccccCCCCe-----------eee-----ccccccccCchhHHHHhh
Q psy9398 1 MWFLIDAKNKILGRVASKIAVYLRGKHKTEYTPHIDTGYPGGI-----------RKI-----NFLKMQEDFPGRVLQKAV 64 (154)
Q Consensus 1 ~w~viDa~~~~lGRlAs~vA~~L~Gk~k~~~~~~~d~gy~gg~-----------k~~-----~~~~~~~r~P~~Il~raV 64 (154)
.|+||||+||+||||||+||+.|+.++.+++.++++....|.. +.+ +++++|+++|++||++||
T Consensus 10 ~W~VIDA~g~~LGRLAS~VAk~Ll~Gd~VVVINAekI~iTG~K~~~K~yy~~~l~~~~~~np~~~~~~~r~P~~Il~~AV 89 (206)
T 3iz5_K 10 KRVVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPAKILWRTI 89 (206)
T ss_dssp SCCEEECTTBBHHHHHHHHHHHHHTTCCEEEECGGGCEEESCHHHHHHHHHHHHHHTTCSCSSSCSCCCCSHHHHHHHHH
T ss_pred eEEEEeCCCCchHHHHHHHHHHHhCCCEEEEEcCcccCcCCchHhhhhheeeecceeecCCCcccchhhcCHHHHHHHHH
Confidence 5999999999999999999999887777888878874333331 222 358999999999999999
Q ss_pred hhhhcccCccccccccceeeeecCcceEEEcccccccccCch--HHHHHHhhHHHhhccCCceeeEEEeecCcccchhhH
Q psy9398 65 KVVNYKYGTGRRKSAIARVFIKIGSGKMTINRIPADKYFSRK--TGLMVISQPLKLTKHTKTFDIKINVRGGGESGQYGA 142 (154)
Q Consensus 65 ~gmlp~~~~grrK~a~aRv~i~~G~g~i~vN~~~~~~yf~~~--~~~~~i~~Pl~~~~~~~~~di~~~v~GGG~~gQa~A 142 (154)
+||||++ +.+++.++.|+++|+|++...-..+.+. +|.. ..+..-...+..++ .+.=.+.|+-.-++...++
T Consensus 90 rGMLPkk-~~lGr~~l~rLkVy~G~~hp~~aqk~~v--vP~al~v~~l~p~rk~~~lg---~ls~~~Gwk~~~vv~~le~ 163 (206)
T 3iz5_K 90 RGMIPHK-TARGEAALARLKAYEGVPPPYDRTKRMV--IPDALKVLRLQPGHRYCLLG---QLSKEVGWNYADTIRELEE 163 (206)
T ss_dssp HHHSCTT-SHHHHHHHTTEEEESSCCTTCCSCCBCC--TTTBCBTTBCSSSSCEEEHH---HHGGGTCTTHHHHHHHHHH
T ss_pred hccCCCC-ChhHHHHHhCCEEeCCCCCChhhccccc--CchHHhhhhcCCCCCeEEHH---HHHHHHCchHHHHHHHHHH
Confidence 9999973 2566789999999999875444434332 3321 11111111222222 2233345777778888888
Q ss_pred HHHHHHHH
Q psy9398 143 VRHGITRA 150 (154)
Q Consensus 143 ir~aiara 150 (154)
-|.+-|..
T Consensus 164 krk~k~~~ 171 (206)
T 3iz5_K 164 KRKEKAKV 171 (206)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777654
No 20
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.87 E-value=3e-24 Score=168.39 Aligned_cols=143 Identities=13% Similarity=0.102 Sum_probs=79.5
Q ss_pred CeEEEeCCCCchhhHHHHHHH-HHhCCCceEEeeeccccCC-----------CCeeee-----ccccccccCchhHHHHh
Q psy9398 1 MWFLIDAKNKILGRVASKIAV-YLRGKHKTEYTPHIDTGYP-----------GGIRKI-----NFLKMQEDFPGRVLQKA 63 (154)
Q Consensus 1 ~w~viDa~~~~lGRlAs~vA~-~L~Gk~k~~~~~~~d~gy~-----------gg~k~~-----~~~~~~~r~P~~Il~ra 63 (154)
.|+||||+||+||||||+||+ +|+|++.+++ ++++.... -..+.. ..+++++++|++||++|
T Consensus 5 ~w~VIDA~g~~LGRLAS~VAk~lL~G~~VVVI-Naeki~iTG~k~~~K~yy~~h~~~~~~~n~~~G~~~~r~P~~I~~~A 83 (203)
T 2zkr_j 5 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVV-RCEGINISGNFYRNKLNYLAFLRKRMNTNPSRGPYDFRAPSRIFWRT 83 (203)
T ss_dssp --CEEECTTBBHHHHHHHHHHHHHHTCCEEEE-CGGGCEEESCHHHHHHHSSSSSCHHHHCCCSSCCCCCCSHHHHHHHH
T ss_pred cEEEEeCCCCchHHHHHHHHHHHhCCCeEEEE-chHHeecCchHHHHHHHHHHHHhhcccCCCCCCccccCChHHHHHHH
Confidence 599999999999999999999 7888765555 46653222 222222 35789999999999999
Q ss_pred hhhhhcccCccccccccceeeeecCcceEEEcccccccccCch--HHHHHHhhHHHhhccCCceeeEEEeecCcccchhh
Q psy9398 64 VKVVNYKYGTGRRKSAIARVFIKIGSGKMTINRIPADKYFSRK--TGLMVISQPLKLTKHTKTFDIKINVRGGGESGQYG 141 (154)
Q Consensus 64 V~gmlp~~~~grrK~a~aRv~i~~G~g~i~vN~~~~~~yf~~~--~~~~~i~~Pl~~~~~~~~~di~~~v~GGG~~gQa~ 141 (154)
|+||||++ +.+++.++.|+++|+|++...-..+|.. ++.. ..+.+-...++. ++.+.=.+.|+-.-++...+
T Consensus 84 VrGMLPkk-~~lGr~~l~rLkVy~G~~hp~~aqkp~v--vp~a~~v~~~~~~~ky~~---lg~ls~~~Gwk~~~vv~~le 157 (203)
T 2zkr_j 84 VRGMLPHK-TKRGQAALDRLKVFDGIPPPYDKKKRMV--VPAALKVVRLKPTRKFAY---LGRLAHEVGWKYQAVTATLE 157 (203)
T ss_dssp HHHHSCTT-SHHHHHHHHTEEECSCSSCSSSSCCBCC--GGGBCCSSSSSCCSCEEE---HHHHC---------------
T ss_pred HHhhCCCC-ChhHHHHHhCcEEeCCCCCchhhcCCcc--cchhhhhhhcCCCCceEE---HHHHHHHhCccHHHHHHHHH
Confidence 99999983 2466789999999999876555555544 3321 111111222333 34446677788888888888
Q ss_pred HHHHHHHHH
Q psy9398 142 AVRHGITRA 150 (154)
Q Consensus 142 Air~aiara 150 (154)
+-|.+-|++
T Consensus 158 ~kRk~k~~~ 166 (203)
T 2zkr_j 158 EKRKEKAKI 166 (203)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 888776654
No 21
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=99.83 E-value=9.3e-22 Score=151.61 Aligned_cols=97 Identities=24% Similarity=0.238 Sum_probs=76.3
Q ss_pred EEEeCCCCchhhHHHHHHHHHhCCCceEEeeeccccCCCC-----------eeee-----ccccccccCchhHHHHhhhh
Q psy9398 3 FLIDAKNKILGRVASKIAVYLRGKHKTEYTPHIDTGYPGG-----------IRKI-----NFLKMQEDFPGRVLQKAVKV 66 (154)
Q Consensus 3 ~viDa~~~~lGRlAs~vA~~L~Gk~k~~~~~~~d~gy~gg-----------~k~~-----~~~~~~~r~P~~Il~raV~g 66 (154)
+||||+||+||||||+||++|+.++++++.++++....|. ++.. +++++|+++|++||+++|+|
T Consensus 1 ~VIDA~g~~LGRLAs~VAk~L~~GD~VVVINaeki~iTG~K~~~K~yy~h~l~~~~~~~~~~~~~~~r~P~~Il~~AVrG 80 (178)
T 3jyw_M 1 VVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRIFYKALRG 80 (178)
T ss_dssp CCCCCCSSCSHHHHHHHHHHHTTTCCCCEECSTTSCCCCCSSHHHHSCSSSSSSTTSCCCSSSCCCCSSTTTHHHHHTTS
T ss_pred CEEcCCCCchHHHHHHHHHHHhCCCEEEEEeCeeeEEcCchHhhEhheeccCcccccCCccccccccCCHHHHHHHHHHH
Confidence 5899999999999999999999888888888886322222 1122 25799999999999999999
Q ss_pred hhcccCccccccccceeeeecCcceEEEcccccc
Q psy9398 67 VNYKYGTGRRKSAIARVFIKIGSGKMTINRIPAD 100 (154)
Q Consensus 67 mlp~~~~grrK~a~aRv~i~~G~g~i~vN~~~~~ 100 (154)
|||++ +.+++..+.|+++|+|++...-..+++.
T Consensus 81 MLP~K-~~lGr~~l~rLkVy~G~~hp~~aqk~~v 113 (178)
T 3jyw_M 81 MVSHK-TARGKAALERLKVFEGIPPPYDKKKRVV 113 (178)
T ss_dssp SSCSS-SHHHHHHHHHCCEESSCCCCSCCSCSSS
T ss_pred Hhhcc-cHhHHHHHhCCeeeCCCCCchhhccccc
Confidence 99962 2566788999999999876555555544
No 22
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=79.68 E-value=1.3 Score=42.65 Aligned_cols=79 Identities=20% Similarity=0.278 Sum_probs=51.6
Q ss_pred Cccccccccceeee--e-cCcceEEEcccccccccCch------------------HHH--------------HHHhhHH
Q psy9398 72 GTGRRKSAIARVFI--K-IGSGKMTINRIPADKYFSRK------------------TGL--------------MVISQPL 116 (154)
Q Consensus 72 ~~grrK~a~aRv~i--~-~G~g~i~vN~~~~~~yf~~~------------------~~~--------------~~i~~Pl 116 (154)
.+|-+|+++..+-. | |.+|.|.|||.++.++ +.. ..| +++.+-+
T Consensus 1113 ~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i-~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al 1191 (1321)
T 4f4c_A 1113 PSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTL-NPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAA 1191 (1321)
T ss_dssp STTSSTTSHHHHHTTSSCCSSSEEEETTEETTTB-CHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHH
T ss_pred CCCChHHHHHHHHhcCccCCCCEEEECCEEhhhC-CHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHH
Confidence 45788888877643 3 6789999999988663 211 122 2333444
Q ss_pred Hhhc-------cCCceeeEEEeecCccc-chhhHHHHHHHHHHhc
Q psy9398 117 KLTK-------HTKTFDIKINVRGGGES-GQYGAVRHGITRAFNQ 153 (154)
Q Consensus 117 ~~~~-------~~~~~di~~~v~GGG~~-gQa~Air~aiaral~~ 153 (154)
..++ .-+.||..+.=+|..+| ||.+ |.||||||+.
T Consensus 1192 ~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQ--riaiARAllr 1234 (1321)
T 4f4c_A 1192 RLANIHNFIAELPEGFETRVGDRGTQLSGGQKQ--RIAIARALVR 1234 (1321)
T ss_dssp HHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHH--HHHHHHHHHS
T ss_pred HHhCChHHHHcCcCCCCCEecCCCcccCHHHHH--HHHHHHHHHh
Confidence 4332 34678988876666666 4555 8999999974
No 23
>2i9n_A MHB4A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=65.02 E-value=3.7 Score=21.94 Aligned_cols=18 Identities=33% Similarity=0.361 Sum_probs=12.9
Q ss_pred cCcccchhhHHHHHHHHH
Q psy9398 133 GGGESGQYGAVRHGITRA 150 (154)
Q Consensus 133 GGG~~gQa~Air~aiara 150 (154)
|||..+.++|.|.|-|-|
T Consensus 14 gggsaaeayakriaeama 31 (33)
T 2i9n_A 14 GGGSAAEAYAKRIAEAMA 31 (33)
T ss_dssp SCCCSTHHHHHHHHHHHC
T ss_pred CCchHHHHHHHHHHHHHh
Confidence 577778888888776543
No 24
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=63.61 E-value=3.5 Score=39.64 Aligned_cols=80 Identities=21% Similarity=0.312 Sum_probs=53.7
Q ss_pred Cccccccccceeeee---cCcceEEEcccccccccCch------------------------------HHHHHHhhHHHh
Q psy9398 72 GTGRRKSAIARVFIK---IGSGKMTINRIPADKYFSRK------------------------------TGLMVISQPLKL 118 (154)
Q Consensus 72 ~~grrK~a~aRv~i~---~G~g~i~vN~~~~~~yf~~~------------------------------~~~~~i~~Pl~~ 118 (154)
.+|-+|+.+.++-+- |-+|+|.|||.++.++ +.. ...+++.+-+..
T Consensus 452 ~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~-~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~ 530 (1321)
T 4f4c_A 452 SSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDI-NLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKM 530 (1321)
T ss_dssp CSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTS-CHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHH
T ss_pred cCCCcHHHHHHHhccccccccCcccCCCccchhc-cHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHH
Confidence 457889888876542 6779999999887652 211 123334444444
Q ss_pred hc-------cCCceeeEEEeecCcccchhhHHHHHHHHHHhc
Q psy9398 119 TK-------HTKTFDIKINVRGGGESGQYGAVRHGITRAFNQ 153 (154)
Q Consensus 119 ~~-------~~~~~di~~~v~GGG~~gQa~Air~aiaral~~ 153 (154)
.+ .-+.||..+.=+|-.+||= +-=|.||||||..
T Consensus 531 a~l~~~i~~lp~G~~T~vGe~G~~LSGG-QkQRiaiARAl~~ 571 (1321)
T 4f4c_A 531 ANAEKFIKTLPNGYNTLVGDRGTQLSGG-QKQRIAIARALVR 571 (1321)
T ss_dssp TTCHHHHHHSTTTTSSEESSSSCCCCHH-HHHHHHHHHHHTT
T ss_pred ccchhHHHcCCCCCccEecCCCCCCCHH-HHHHHHHHHHHcc
Confidence 32 4577899998888888763 2349999999964
No 25
>2i9o_A MHB8A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=57.88 E-value=6 Score=21.63 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=10.6
Q ss_pred cCcccchhhHHHHHHHH
Q psy9398 133 GGGESGQYGAVRHGITR 149 (154)
Q Consensus 133 GGG~~gQa~Air~aiar 149 (154)
|||..+.++|.|.|-|-
T Consensus 18 gggsaaeayakriaeam 34 (37)
T 2i9o_A 18 GGGSAAEAYAKRIAEAM 34 (37)
T ss_dssp CSCSSHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHH
Confidence 45566667777766554
No 26
>1rre_A ATP-dependent protease LA; catalytic Ser-Lys DYAD, hydrolase; HET: MSE; 1.75A {Escherichia coli} SCOP: d.14.1.10 PDB: 1rr9_A*
Probab=45.14 E-value=37 Score=25.49 Aligned_cols=50 Identities=16% Similarity=0.178 Sum_probs=29.9
Q ss_pred eeecCcceEEEcccccccccCchHHHHHHhhHHH----hhcc----CCceeeEEEeecCcc
Q psy9398 84 FIKIGSGKMTINRIPADKYFSRKTGLMVISQPLK----LTKH----TKTFDIKINVRGGGE 136 (154)
Q Consensus 84 ~i~~G~g~i~vN~~~~~~yf~~~~~~~~i~~Pl~----~~~~----~~~~di~~~v~GGG~ 136 (154)
.+.+|.|.+.+.|.+-+. ++. -++.+..-+. ..+. +..+||++++-+|..
T Consensus 32 ~~~~G~g~~~itG~~~~~-~kE--S~~~a~s~~~~~~~~~g~~~~~~~~~di~vnl~~g~~ 89 (200)
T 1rre_A 32 ACVPGKGKLTYTGSLGEV-MQE--SIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGAT 89 (200)
T ss_dssp EEEECSSCEEEESSBCHH-HHH--HHHHHHHHHHHTHHHHTCCTTTTTSEEEEEECSSTTS
T ss_pred EEeCCCceEEEecCchHH-HHH--HHHHHHHHHHHhHHhcCCCcccCCcceEEEEeCCccc
Confidence 445788899998876442 221 2222222222 2332 668999999988754
No 27
>2x36_A LON protease homolog, mitochondrial; hydrolase, catalytic DYAD, transit peptide; 2.00A {Homo sapiens}
Probab=37.88 E-value=36 Score=25.80 Aligned_cols=64 Identities=11% Similarity=0.112 Sum_probs=30.5
Q ss_pred cCcceEEEcccccccccCchHHH--HHH-hhHHHhh--c-cCCceeeEEEeecCcccchhhHHHHHHHHHH
Q psy9398 87 IGSGKMTINRIPADKYFSRKTGL--MVI-SQPLKLT--K-HTKTFDIKINVRGGGESGQYGAVRHGITRAF 151 (154)
Q Consensus 87 ~G~g~i~vN~~~~~~yf~~~~~~--~~i-~~Pl~~~--~-~~~~~di~~~v~GGG~~gQa~Air~aiaral 151 (154)
+|.|.+.+.|.+-+. ++....+ .-+ ...+.+. + .+...||++++-+|-..-.=-+.-++||-||
T Consensus 43 ~g~g~~~itG~~~~~-~kES~~~a~s~~~~~~~~~~~~~~~~~~~di~vnl~~g~~~K~GpsadLaia~Ai 112 (207)
T 2x36_A 43 DKDGSLEVTGQLGEV-MKESARIAYTFARAFLMQHAPANDYLVTSHIHLHVPEGATPKDGPSAGCTIVTAL 112 (207)
T ss_dssp ---CEEEEESCCCHH-HHHHHHHHHHHHHHHHHHHSTTCCHHHHCEEEEECCSCBCTTTGGGGHHHHHHHH
T ss_pred CCCCeEEEEeCchHH-HHHHHHHHHHHHHhcccccccccccCccceEEEEeCCcccCCCCCcchHHHHHHH
Confidence 688999999976443 3321111 111 1122111 1 2557899999988765423333334444443
No 28
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=33.28 E-value=47 Score=28.04 Aligned_cols=57 Identities=12% Similarity=0.127 Sum_probs=32.9
Q ss_pred CcceEEEcccccccccCch-HHHHHHhhH-----HHhhccCCceeeEEEeecCcccchhhHHHHH
Q psy9398 88 GSGKMTINRIPADKYFSRK-TGLMVISQP-----LKLTKHTKTFDIKINVRGGGESGQYGAVRHG 146 (154)
Q Consensus 88 G~g~i~vN~~~~~~yf~~~-~~~~~i~~P-----l~~~~~~~~~di~~~v~GGG~~gQa~Air~a 146 (154)
+.+.+.+||+.+..-.... .....+... .........| ++-|=|||..|-+-|+.++
T Consensus 170 svPt~~i~g~~~~~G~~~~~~l~~~l~~~~~~~~~~~~~~~~~~--dVvIIGgG~AGl~aA~~la 232 (521)
T 1hyu_A 170 GVPAVFVNGKEFGQGRMTLTEIVAKVDTGAEKRAAEALNKRDAY--DVLIVGSGPAGAAAAVYSA 232 (521)
T ss_dssp SSSEEEETTEEEEESCCCHHHHHHHHCCSSCCHHHHHHHTSCCE--EEEEECCSHHHHHHHHHHH
T ss_pred ccCEEEECCEEEecCCCCHHHHHHHHhhcccccccccccccCcc--cEEEECCcHHHHHHHHHHH
Confidence 5678888998765322222 222222221 1112233344 4677899999999988765
No 29
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=30.22 E-value=57 Score=27.92 Aligned_cols=50 Identities=18% Similarity=0.286 Sum_probs=26.7
Q ss_pred eecCcceEEEcccccccccCchHHH--HHHhhHHHhhcc----CCceeeEEEeecCc
Q psy9398 85 IKIGSGKMTINRIPADKYFSRKTGL--MVISQPLKLTKH----TKTFDIKINVRGGG 135 (154)
Q Consensus 85 i~~G~g~i~vN~~~~~~yf~~~~~~--~~i~~Pl~~~~~----~~~~di~~~v~GGG 135 (154)
+.+|.|.+++.|.+-+. +.....+ ..+..-+.-++. ...+||++++-||.
T Consensus 376 ~~~g~~~~~~~G~~~~~-~~es~~~a~~~v~~~~~~~g~~~~~~~~~di~v~~~~g~ 431 (543)
T 3m6a_A 376 LSPGKGKLILTGKLGDV-MRESAQAAFSYVRSKTEELGIEPDFHEKYDIHIHVPEGA 431 (543)
T ss_dssp EESSCSCEEEEESCCHH-HHHHHHHHHHHHTSSCGGGSSCSSCTTTCEEEEEECTTB
T ss_pred eeCCCCceEEecCchHH-HHHHHHHHHHHHHHHHHHcCCCccccCCcceEEEeCCCC
Confidence 34677777777765332 2211111 122222222231 56789999999984
No 30
>1xhk_A Putative protease LA homolog; LON protease, ATP dependent, catalytic DYAD, hydrolase; HET: MES; 1.90A {Methanocaldococcus jannaschii} SCOP: d.14.1.10
Probab=28.95 E-value=56 Score=24.05 Aligned_cols=15 Identities=13% Similarity=0.040 Sum_probs=12.2
Q ss_pred cCCceeeEEEeecCc
Q psy9398 121 HTKTFDIKINVRGGG 135 (154)
Q Consensus 121 ~~~~~di~~~v~GGG 135 (154)
.+..+||++++-+|.
T Consensus 76 ~~~~~di~vn~~~g~ 90 (187)
T 1xhk_A 76 DLNNKEIYIQFSQSY 90 (187)
T ss_dssp CSTTEEEEEEESSCC
T ss_pred CCCCeeEEEEECCCC
Confidence 356799999998883
No 31
>1wh2_A Hypothetical protein AT5G08430; GYF domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} SCOP: d.76.1.1
Probab=20.43 E-value=37 Score=21.88 Aligned_cols=13 Identities=23% Similarity=0.636 Sum_probs=11.5
Q ss_pred CeEEEeCCCCchh
Q psy9398 1 MWFLIDAKNKILG 13 (154)
Q Consensus 1 ~w~viDa~~~~lG 13 (154)
.|+.+|..|++-|
T Consensus 19 ~W~Y~Dp~g~iQG 31 (78)
T 1wh2_A 19 NWLYKDPQGLVQG 31 (78)
T ss_dssp CEEEECTTSCEEE
T ss_pred eEEEECCCCCCcC
Confidence 5999999999988
Done!