RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9398
(154 letters)
>d2vqei1 d.14.1.1 (I:2-128) Ribosomal protein S9 {Thermus
thermophilus [TaxId: 274]}
Length = 127
Score = 84.6 bits (209), Expect = 1e-22
Identities = 38/84 (45%), Positives = 52/84 (61%)
Query: 71 YGTGRRKSAIARVFIKIGSGKMTINRIPADKYFSRKTGLMVISQPLKLTKHTKTFDIKIN 130
YGTGRRK A+ARVF++ G+GK+T+N ++YF + +PL+ FD I
Sbjct: 4 YGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGRFDAYIT 63
Query: 131 VRGGGESGQYGAVRHGITRAFNQL 154
VRGGG+SGQ A++ GI RA Q
Sbjct: 64 VRGGGKSGQIDAIKLGIARALVQY 87
>d2gy9i1 d.14.1.1 (I:4-129) Ribosomal protein S9 {Escherichia coli
[TaxId: 562]}
Length = 126
Score = 81.8 bits (202), Expect = 2e-21
Identities = 47/80 (58%), Positives = 60/80 (75%)
Query: 71 YGTGRRKSAIARVFIKIGSGKMTINRIPADKYFSRKTGLMVISQPLKLTKHTKTFDIKIN 130
YGTGRRKS+ ARVFIK G+GK+ IN+ ++YF R+T MV+ QPL+L + D+ I
Sbjct: 3 YGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEKLDLYIT 62
Query: 131 VRGGGESGQYGAVRHGITRA 150
V+GGG SGQ GA+RHGITRA
Sbjct: 63 VKGGGISGQAGAIRHGITRA 82
>d2j01n1 c.21.1.1 (N:1-139) Ribosomal protein L13 {Thermus
thermophilus [TaxId: 274]}
Length = 139
Score = 60.8 bits (147), Expect = 3e-13
Identities = 39/116 (33%), Positives = 54/116 (46%), Gaps = 30/116 (25%)
Query: 2 WFLIDAKNKILGRVASKIAVYLRGKHKTEYTPHIDT------------------------ 37
W LIDA+ K LGR+A+KIA LRGKH+ ++TP++
Sbjct: 13 WVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIY 72
Query: 38 ----GYPGGIRKINFLKMQEDFPGRVLQKAVKVVNYKYGTGRRKSAIARVFIKIGS 89
GYPGG++KI KM P RVL+ AVK + K + R+ + G
Sbjct: 73 TRYSGYPGGLKKIPLEKMLATHPERVLEHAVKGMLPK--GPLGRRLFKRLKVYAGP 126
>d2zjrg1 c.21.1.1 (G:30-171) Ribosomal protein L13 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 142
Score = 59.6 bits (144), Expect = 8e-13
Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 30/116 (25%)
Query: 2 WFLIDAKNKILGRVASKIAVYLRGKHKTEYTPHIDTG----------------------- 38
W ++DA LGR+A+ IA +RGKH+ ++TP++ G
Sbjct: 12 WVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKVY 71
Query: 39 -----YPGGIRKINFLKMQEDFPGRVLQKAVKVVNYKYGTGRRKSAIARVFIKIGS 89
Y GG++ + P RV++ AV + ++ R+ + G
Sbjct: 72 TRYTGYQGGLKTETAREALSKHPERVIEHAVF--GMLPKGRQGRAMHTRLKVYAGE 125
>d2gych1 c.21.1.1 (H:1-140) Ribosomal protein L13 {Escherichia coli
[TaxId: 562]}
Length = 140
Score = 54.6 bits (131), Expect = 6e-11
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 30/117 (25%)
Query: 1 MWFLIDAKNKILGRVASKIAVYLRGKHKTEYTPHID------------------------ 36
W+++DA K LGR+A+++A LRGKHK EYTPH+D
Sbjct: 14 DWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKV 73
Query: 37 ----TGYPGGIRKINFLKMQEDFPGRVLQKAVKVVNYKYGTGRRKSAIARVFIKIGS 89
TG+ GGI++ F +M P RV++ AVK + K ++ ++ + G+
Sbjct: 74 YYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPK--GPLGRAMFRKLKVYAGN 128
>d1vqoj1 c.21.1.1 (J:4-145) Ribosomal protein L13 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 142
Score = 40.7 bits (95), Expect = 1e-05
Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 23/105 (21%)
Query: 2 WFLIDAKNKILGRVASKIA----------------VYLRGKHKTEYTPHIDTGYPGGIRK 45
++DA++ I+GRVAS++A + G+ + + G
Sbjct: 6 DVIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGREEQIVEKYEKRVDIGNDNG 65
Query: 46 INFLKMQEDFPGRVLQKAV-KVVNYKYGTGRRKSAIARVFIKIGS 89
P + ++ + ++ +K R + A V + +G+
Sbjct: 66 Y----FYPKRPDGIFKRTIRGMLPHK--KQRGREAFESVRVYLGN 104
>d1j3aa_ c.21.1.1 (A:) Ribosomal protein L13 {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 142
Score = 39.6 bits (92), Expect = 2e-05
Identities = 16/102 (15%), Positives = 38/102 (37%), Gaps = 17/102 (16%)
Query: 4 LIDAKNKILGRVASKIAVYLR----------------GKHKTEYTPHIDTGYPGGIRKIN 47
+I+A ILGR+AS++A L G + ++ + +
Sbjct: 3 IINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPR 62
Query: 48 FLKMQEDFPGRVLQKAVKVVNYKYGTGRRKSAIARVFIKIGS 89
++++ ++ + + T R + A R+ + +G
Sbjct: 63 RGPFYPKRSDEIVRRTIRGMLP-WKTDRGRKAFRRLKVYVGI 103
>d1ji6a1 b.18.1.3 (A:503-652) delta-Endotoxin, C-terminal domain
{Bacillus thuringiensis, CRY3bb1 [TaxId: 1428]}
Length = 150
Score = 24.1 bits (52), Expect = 8.2
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 8/55 (14%)
Query: 94 INRIPADKYFSRKTGLMVISQP-------LKL-TKHTKTFDIKINVRGGGESGQY 140
I ++P K ++ +G +I P L L K+ + +Y
Sbjct: 10 ITQLPVVKAYALSSGASIIEGPGFTGGNLLFLKESSNSIAKFKVTLNSAALLQRY 64
>d1ciya1 b.18.1.3 (A:462-609) delta-Endotoxin, C-terminal domain
{Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]}
Length = 148
Score = 23.6 bits (51), Expect = 8.7
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 94 INRIPADKYFSRKTGLMVISQP-------LKLTKHTKTFDIKINVRGGGESGQYGAVR 144
I +IP K + +G V+ P L+ T + +++N+ S +Y VR
Sbjct: 9 ITQIPLTKSTNLGSGTSVVKGPGFTGGDILRRTSPGQISTLRVNIT-APLSQRYR-VR 64
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 24.2 bits (51), Expect = 9.2
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 9 NKILGRVASKIAVYL 23
N++ + S+I YL
Sbjct: 191 NRVADHIQSRIVYYL 205
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.140 0.411
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 586,710
Number of extensions: 26984
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 11
Length of query: 154
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 76
Effective length of database: 1,336,656
Effective search space: 101585856
Effective search space used: 101585856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.0 bits)