BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9399
(453 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P25888|RHLE_ECOLI ATP-dependent RNA helicase RhlE OS=Escherichia coli (strain K12)
GN=rhlE PE=1 SV=3
Length = 454
Score = 309 bits (791), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>sp|Q5L3G9|CSHA_GEOKA DEAD-box ATP-dependent RNA helicase CshA OS=Geobacillus
kaustophilus (strain HTA426) GN=cshA PE=3 SV=1
Length = 467
Score = 292 bits (748), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 162/412 (39%), Positives = 245/412 (59%), Gaps = 40/412 (9%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F+ +GL + V+KA+ ++G+ + T +Q + IP ++ +D+I +QTG+GKTAAF +P +
Sbjct: 3 TFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVE 62
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
K +N N+ + + LV+ PTRELA+QV+ + G
Sbjct: 63 K--------------VNVKNSAV--------------QALVVAPTRELAIQVSEELYKIG 94
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+K+++ + I GG RQ++ L ++P +++ TPGR+IDH+N G + H+ +VLDEA
Sbjct: 95 -AVKRVRVLPIYGGQDIERQIRALKKHPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEA 153
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
D ML+MGFI DIE I+ P RQT+LFSAT+ + +AE +P ++KV + E
Sbjct: 154 DEMLNMGFIEDIEAILSHVPAERQTLLFSATMPDPIRRIAERFMNEPELVKVKAKEMTVP 213
Query: 242 NITQSILFVDDILHKNRLLDYLLR--DKRVGQ-AVVFTATKRDADIIADRLNISGFLAAP 298
NI Q L V H+ + D L R D + + A+VF TKR D +A+ LN+ G+ A
Sbjct: 214 NIQQYYLEV----HEKKKFDILTRLLDIQAPELAIVFGRTKRRVDELAEALNLRGYAAEG 269
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HGDL Q R L + G I+ILVATDVAARG+D+ +THV+N+D+P+ PE YVHRIG
Sbjct: 270 IHGDLSQAKRLSVLRKFKEGAIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIG 329
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQI----PIEVINGFEPKKRI 406
RTGRAG+ G A++ V E + IER TK+++ P + E ++RI
Sbjct: 330 RTGRAGKTGVAMTFVTPREIGQLHHIERTTKRKMERMKPPTLDEALEGQQRI 381
>sp|Q8K9H6|DEAD_BUCAP Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=deaD PE=3 SV=1
Length = 601
Score = 286 bits (732), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 164/394 (41%), Positives = 228/394 (57%), Gaps = 36/394 (9%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F +GL+ ++K+L K+GY KP+ +Q IP + GRD++ +QTGSGKTAAF LP LH
Sbjct: 8 FSFLGLNPFIIKSLSKMGYVKPSPIQAACIPLLLEGRDVLGMAQTGSGKTAAFSLPLLH- 66
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
NLN N P++LVL PTRELA+QV A +
Sbjct: 67 -------------NLNIN--------------LKAPQILVLAPTRELAVQVAEAFSDFSK 99
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
Y+ I + + GG Y Q++ L + P+I++ TPGRL+DH+ G +N S+L LVLDEAD
Sbjct: 100 YIMGIHVLPLYGGQRYEVQLRALRQGPQIVVGTPGRLLDHLKRGTLNLSNLYALVLDEAD 159
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
ML MGFI D+E I+ P QT LFSAT+ + +++ K+P +K+ S + +
Sbjct: 160 EMLRMGFIEDVETIMSQIPKEHQTALFSATMPEAIRRISKRFMKNPQEIKIQSNITTRPD 219
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRV---GQAVVFTATKRDADIIADRLNISGFLAAPL 299
I QS V R D L+R V ++F TK +++ L +G+ +A L
Sbjct: 220 IKQSYWMV-----YGRKTDALIRFLEVEDFSATIIFVKTKNATLEVSEALERNGYNSAAL 274
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
+GD++Q R +TLE L+ GR+ IL+ATDVAARG+DV I+ V NYD+P E YVHRIGR
Sbjct: 275 NGDMNQALREQTLERLKSGRLDILIATDVAARGLDVDRISFVINYDIPMDSESYVHRIGR 334
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIP 393
TGRAGR G A+ V + ER ++ IER Q IP
Sbjct: 335 TGRAGRAGRALLFVENRERRLLRNIERTINQTIP 368
>sp|Q81IT9|CSHA_BACCR DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus cereus (strain
ATCC 14579 / DSM 31) GN=cshA PE=3 SV=2
Length = 533
Score = 285 bits (730), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 157/391 (40%), Positives = 236/391 (60%), Gaps = 30/391 (7%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F+ +GL + +L+++ +G+ + T +Q + IP A+ G+D+I +QTG+GKTAAF LP L
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL- 61
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+K+ THKE ++ +V+ PTRELA+QV + G
Sbjct: 62 --------------------DKVDTHKESVQG-------IVIAPTRELAIQVGEELYKIG 94
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+ K+++ + I GG RQ++ L ++P I++ TPGR++DH+N + +++ +VLDEA
Sbjct: 95 KH-KRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEA 153
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
D ML+MGFI DIE I+ P T QT+LFSAT+ + +AE +P +KV + E
Sbjct: 154 DEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMP 213
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
NI Q L V + K +L LL + A+VF TKR D +++ LN+ G+ A +HG
Sbjct: 214 NIQQFYLEVQE-KKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
DL Q R L + G I++LVATDVAARG+D+ +THV+N+D+P+ PE YVHRIGRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQI 392
RAG+ G A+ V E +K IER TK+++
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKM 363
>sp|Q73EU1|CSHA_BACC1 DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus cereus (strain
ATCC 10987) GN=cshA PE=3 SV=1
Length = 525
Score = 285 bits (730), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 157/391 (40%), Positives = 236/391 (60%), Gaps = 30/391 (7%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F+ +GL + +L+++ +G+ + T +Q + IP A+ G+D+I +QTG+GKTAAF LP L
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL- 61
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+K+ THKE ++ +V+ PTRELA+QV + G
Sbjct: 62 --------------------DKVDTHKESVQG-------IVIAPTRELAIQVGEELYKIG 94
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+ K+++ + I GG RQ++ L ++P I++ TPGR++DH+N + +++ +VLDEA
Sbjct: 95 KH-KRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEA 153
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
D ML+MGFI DIE I+ P T QT+LFSAT+ + +AE +P +KV + E
Sbjct: 154 DEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMP 213
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
NI Q L V + K +L LL + A+VF TKR D +++ LN+ G+ A +HG
Sbjct: 214 NIQQFYLEVQE-KKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
DL Q R L + G I++LVATDVAARG+D+ +THV+N+D+P+ PE YVHRIGRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQI 392
RAG+ G A+ V E +K IER TK+++
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKM 363
>sp|Q63GX5|CSHA_BACCZ DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus cereus (strain
ZK / E33L) GN=cshA PE=3 SV=1
Length = 528
Score = 285 bits (730), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 157/391 (40%), Positives = 236/391 (60%), Gaps = 30/391 (7%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F+ +GL + +L+++ +G+ + T +Q + IP A+ G+D+I +QTG+GKTAAF LP L
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL- 61
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+K+ THKE ++ +V+ PTRELA+QV + G
Sbjct: 62 --------------------DKVDTHKESVQG-------IVIAPTRELAIQVGEELYKIG 94
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+ K+++ + I GG RQ++ L ++P I++ TPGR++DH+N + +++ +VLDEA
Sbjct: 95 KH-KRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEA 153
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
D ML+MGFI DIE I+ P T QT+LFSAT+ + +AE +P +KV + E
Sbjct: 154 DEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMP 213
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
NI Q L V + K +L LL + A+VF TKR D +++ LN+ G+ A +HG
Sbjct: 214 NIQQFYLEVQE-KKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
DL Q R L + G I++LVATDVAARG+D+ +THV+N+D+P+ PE YVHRIGRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQI 392
RAG+ G A+ V E +K IER TK+++
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKM 363
>sp|Q6HPE6|CSHA_BACHK DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus thuringiensis
subsp. konkukian (strain 97-27) GN=cshA PE=3 SV=1
Length = 528
Score = 285 bits (729), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 157/391 (40%), Positives = 236/391 (60%), Gaps = 30/391 (7%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F+ +GL + +L+++ +G+ + T +Q + IP A+ G+D+I +QTG+GKTAAF LP L
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL- 61
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+K+ THKE ++ +V+ PTRELA+QV + G
Sbjct: 62 --------------------DKVDTHKESVQG-------IVIAPTRELAIQVGEELYKIG 94
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+ K+++ + I GG RQ++ L ++P I++ TPGR++DH+N + +++ +VLDEA
Sbjct: 95 KH-KRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEA 153
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
D ML+MGFI DIE I+ P T QT+LFSAT+ + +AE +P +KV + E
Sbjct: 154 DEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMP 213
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
NI Q L V + K +L LL + A+VF TKR D +++ LN+ G+ A +HG
Sbjct: 214 NIQQFYLEVQE-KKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
DL Q R L + G I++LVATDVAARG+D+ +THV+N+D+P+ PE YVHRIGRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQI 392
RAG+ G A+ V E +K IER TK+++
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKM 363
>sp|Q81VG0|CSHA_BACAN DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus anthracis
GN=cshA PE=3 SV=1
Length = 528
Score = 285 bits (729), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 157/391 (40%), Positives = 236/391 (60%), Gaps = 30/391 (7%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F+ +GL + +L+++ +G+ + T +Q + IP A+ G+D+I +QTG+GKTAAF LP L
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL- 61
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+K+ THKE ++ +V+ PTRELA+QV + G
Sbjct: 62 --------------------DKVDTHKESVQG-------IVIAPTRELAIQVGEELYKIG 94
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+ K+++ + I GG RQ++ L ++P I++ TPGR++DH+N + +++ +VLDEA
Sbjct: 95 KH-KRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEA 153
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
D ML+MGFI DIE I+ P T QT+LFSAT+ + +AE +P +KV + E
Sbjct: 154 DEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMP 213
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
NI Q L V + K +L LL + A+VF TKR D +++ LN+ G+ A +HG
Sbjct: 214 NIQQFYLEVQE-KKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
DL Q R L + G I++LVATDVAARG+D+ +THV+N+D+P+ PE YVHRIGRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQI 392
RAG+ G A+ V E +K IER TK+++
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKM 363
>sp|A0R8U6|CSHA_BACAH DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus thuringiensis
(strain Al Hakam) GN=cshA PE=3 SV=1
Length = 528
Score = 285 bits (729), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 157/391 (40%), Positives = 236/391 (60%), Gaps = 30/391 (7%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F+ +GL + +L+++ +G+ + T +Q + IP A+ G+D+I +QTG+GKTAAF LP L
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL- 61
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+K+ THKE ++ +V+ PTRELA+QV + G
Sbjct: 62 --------------------DKVDTHKESVQG-------IVIAPTRELAIQVGEELYKIG 94
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+ K+++ + I GG RQ++ L ++P I++ TPGR++DH+N + +++ +VLDEA
Sbjct: 95 KH-KRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEA 153
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
D ML+MGFI DIE I+ P T QT+LFSAT+ + +AE +P +KV + E
Sbjct: 154 DEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMP 213
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
NI Q L V + K +L LL + A+VF TKR D +++ LN+ G+ A +HG
Sbjct: 214 NIQQFYLEVQE-KKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
DL Q R L + G I++LVATDVAARG+D+ +THV+N+D+P+ PE YVHRIGRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQI 392
RAG+ G A+ V E +K IER TK+++
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKM 363
>sp|Q11039|DEAD_MYCTU Cold-shock DEAD box protein A homolog OS=Mycobacterium tuberculosis
GN=deaD PE=3 SV=1
Length = 563
Score = 285 bits (728), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 159/391 (40%), Positives = 223/391 (57%), Gaps = 31/391 (7%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F + +H VL+A+ VGY PT +Q IPA ++G D++ +QTG+GKTAAF +P L
Sbjct: 14 TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPML- 72
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+KI + K P+ LVL PTRELALQV A RYG
Sbjct: 73 ------SKIDITSKV---------------------PQALVLVPTRELALQVAEAFGRYG 105
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
Y+ ++ + I GG Y Q+ L R ++++ TPGR+IDH+ ++ S + LVLDEA
Sbjct: 106 AYLSQLNVLPIYGGSSYAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEA 165
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
D ML MGF +D+E+I+ TP +Q LFSAT+ + ++ DP + + +
Sbjct: 166 DEMLTMGFADDVERILSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAE 225
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
NI+QS + + K L +L + +VF TK+ + IA++L GF AA + G
Sbjct: 226 NISQSYI---QVARKMDALTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISG 282
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
D+ Q R RT+ LR G I ILVATDVAARG+DV I+HV NYD+P E YVHRIGRTG
Sbjct: 283 DVPQAQRERTITALRDGDIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTG 342
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQI 392
RAGR+G A+ V+ E +K IE+ T+Q +
Sbjct: 343 RAGRSGAALIFVSPRELHLLKAIEKATRQTL 373
>sp|P57453|DEAD_BUCAI Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=deaD PE=3 SV=1
Length = 601
Score = 285 bits (728), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 161/391 (41%), Positives = 227/391 (58%), Gaps = 30/391 (7%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F +GL+ ++++L ++GY KP+ +Q IP + GRD++ +QTGSGKTAAF LP LH
Sbjct: 8 FSFLGLNPFIIQSLNEMGYVKPSPIQASCIPLLLEGRDVLGMAQTGSGKTAAFSLPLLH- 66
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
NLN N P++LVL PTRELA+QV A +
Sbjct: 67 -------------NLNIN--------------LKAPQILVLAPTRELAVQVAEAFSDFSK 99
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
YM I + + GG Y Q++ L + P+I++ TPGRL+DH+ G +N S+L LVLDEAD
Sbjct: 100 YMIGIHVLPLYGGQRYELQLRALRQGPQIVVGTPGRLLDHLKRGTLNLSNLHGLVLDEAD 159
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
ML MGFI D+E I+ P QT LFSAT+ + +++ ++P +K+ S + +
Sbjct: 160 EMLRMGFIEDVETIMAQIPKEHQTALFSATMPEAIRRISKRFMRNPKEIKIQSNITTRPD 219
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
I QS V K L L + ++F TK +++ L +G+ +A L+GD
Sbjct: 220 IKQSYWMVYG--RKTDALIRFLEAEDFSATIIFVRTKNATLEVSEALERNGYNSAALNGD 277
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
++Q R +TLE L+ GR+ IL+ATDVAARG+DV I+ V NYD+P E YVHRIGRTGR
Sbjct: 278 MNQALREQTLERLKNGRLDILIATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGR 337
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIP 393
AGR G A+ V + ER ++ IER KQ IP
Sbjct: 338 AGRAGRALLFVENRERRLLRNIERTMKQSIP 368
>sp|P0A9P8|DEAD_SHIFL Cold-shock DEAD box protein A OS=Shigella flexneri GN=deaD PE=3
SV=2
Length = 629
Score = 281 bits (718), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 164/413 (39%), Positives = 240/413 (58%), Gaps = 31/413 (7%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F +GL +L+AL +GY KP+ +Q + IP ++GRD++ +QTGSGKTAAF LP L
Sbjct: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL- 65
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+N P +K P++LVL PTRELA+QV A +
Sbjct: 66 -----QNLDPELKA----------------------PQILVLAPTRELAVQVAEAMTDFS 98
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+M+ + +++ GG Y Q++ L + P+I++ TPGRL+DH+ G ++ S L LVLDEA
Sbjct: 99 KHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEA 158
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
D ML MGFI D+E I+ P QT LFSAT+ + + K+P +++ S +
Sbjct: 159 DEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRP 218
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
+I+QS V + KN L L + A++F TK +A+ L +G+ +A L+G
Sbjct: 219 DISQSYWTVWG-MRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNG 277
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
D++Q R +TLE L+ GR+ IL+ATDVAARG+DV I+ V NYD+P E YVHRIGRTG
Sbjct: 278 DMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTG 337
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIP-IEVING-FEPKKRIRTYYSR 412
RAGR G A+ V + ER ++ IER K IP +E+ N K+R+ + ++
Sbjct: 338 RAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAK 390
>sp|P0A9P6|DEAD_ECOLI Cold-shock DEAD box protein A OS=Escherichia coli (strain K12)
GN=deaD PE=1 SV=2
Length = 629
Score = 281 bits (718), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 164/413 (39%), Positives = 240/413 (58%), Gaps = 31/413 (7%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F +GL +L+AL +GY KP+ +Q + IP ++GRD++ +QTGSGKTAAF LP L
Sbjct: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL- 65
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+N P +K P++LVL PTRELA+QV A +
Sbjct: 66 -----QNLDPELKA----------------------PQILVLAPTRELAVQVAEAMTDFS 98
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+M+ + +++ GG Y Q++ L + P+I++ TPGRL+DH+ G ++ S L LVLDEA
Sbjct: 99 KHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEA 158
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
D ML MGFI D+E I+ P QT LFSAT+ + + K+P +++ S +
Sbjct: 159 DEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRP 218
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
+I+QS V + KN L L + A++F TK +A+ L +G+ +A L+G
Sbjct: 219 DISQSYWTVWG-MRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNG 277
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
D++Q R +TLE L+ GR+ IL+ATDVAARG+DV I+ V NYD+P E YVHRIGRTG
Sbjct: 278 DMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTG 337
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIP-IEVING-FEPKKRIRTYYSR 412
RAGR G A+ V + ER ++ IER K IP +E+ N K+R+ + ++
Sbjct: 338 RAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAK 390
>sp|P0A9P7|DEAD_ECOL6 Cold-shock DEAD box protein A OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=deaD PE=3 SV=2
Length = 629
Score = 281 bits (718), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 164/413 (39%), Positives = 240/413 (58%), Gaps = 31/413 (7%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F +GL +L+AL +GY KP+ +Q + IP ++GRD++ +QTGSGKTAAF LP L
Sbjct: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL- 65
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+N P +K P++LVL PTRELA+QV A +
Sbjct: 66 -----QNLDPELKA----------------------PQILVLAPTRELAVQVAEAMTDFS 98
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+M+ + +++ GG Y Q++ L + P+I++ TPGRL+DH+ G ++ S L LVLDEA
Sbjct: 99 KHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEA 158
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
D ML MGFI D+E I+ P QT LFSAT+ + + K+P +++ S +
Sbjct: 159 DEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRP 218
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
+I+QS V + KN L L + A++F TK +A+ L +G+ +A L+G
Sbjct: 219 DISQSYWTVWG-MRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNG 277
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
D++Q R +TLE L+ GR+ IL+ATDVAARG+DV I+ V NYD+P E YVHRIGRTG
Sbjct: 278 DMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTG 337
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIP-IEVING-FEPKKRIRTYYSR 412
RAGR G A+ V + ER ++ IER K IP +E+ N K+R+ + ++
Sbjct: 338 RAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAK 390
>sp|Q8XA87|DEAD_ECO57 Cold-shock DEAD box protein A OS=Escherichia coli O157:H7 GN=deaD
PE=3 SV=3
Length = 629
Score = 281 bits (718), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 164/413 (39%), Positives = 240/413 (58%), Gaps = 31/413 (7%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F +GL +L+AL +GY KP+ +Q + IP ++GRD++ +QTGSGKTAAF LP L
Sbjct: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL- 65
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+N P +K P++LVL PTRELA+QV A +
Sbjct: 66 -----QNLDPELKA----------------------PQILVLAPTRELAVQVAEAMTDFS 98
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+M+ + +++ GG Y Q++ L + P+I++ TPGRL+DH+ G ++ S L LVLDEA
Sbjct: 99 KHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEA 158
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
D ML MGFI D+E I+ P QT LFSAT+ + + K+P +++ S +
Sbjct: 159 DEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRP 218
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
+I+QS V + KN L L + A++F TK +A+ L +G+ +A L+G
Sbjct: 219 DISQSYWTVWG-MRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNG 277
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
D++Q R +TLE L+ GR+ IL+ATDVAARG+DV I+ V NYD+P E YVHRIGRTG
Sbjct: 278 DMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTG 337
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIP-IEVING-FEPKKRIRTYYSR 412
RAGR G A+ V + ER ++ IER K IP +E+ N K+R+ + ++
Sbjct: 338 RAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAK 390
>sp|P44701|SRMB_HAEIN ATP-dependent RNA helicase SrmB homolog OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=srmB PE=3
SV=1
Length = 439
Score = 278 bits (712), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 152/405 (37%), Positives = 231/405 (57%), Gaps = 26/405 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F+ L +LKAL K GY++PT +Q +AIPAA+ D++ S+ TG+GKTAAF+LPAL
Sbjct: 5 QFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEESDVLGSAPTGTGKTAAFLLPALQ 64
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
R KP PR+LVLTPTRELA+QV E
Sbjct: 65 HLLDYP------------------------RRKPGPPRILVLTPTRELAMQVAEQAEELA 100
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+ + +I GG+ Y + + N ++++ATPGRL+ ++ + +++L+ DEA
Sbjct: 101 QFTH-LNIATITGGVAYQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEA 159
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDG-IVGNMAENITKDPLILKVNSIEKKQ 240
DRML MGF D EKI T +QT+LFSATL+G ++ + AE + DP+ + +++
Sbjct: 160 DRMLQMGFGQDAEKIAAETRWRKQTLLFSATLEGELLVDFAERLLNDPVKVDAEPSRRER 219
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
K I Q D HK +LL + + V + +VF + DA +++ L G +A L
Sbjct: 220 KKINQWYYHADSNEHKIKLLARFIETEEVTRGIVFIRRREDARELSETLRKRGIRSAYLE 279
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G++ Q RN ++ L+ G + +LVATDVAARGID+ ++HV N+DLP + Y+HRIGRT
Sbjct: 280 GEMAQTQRNNAIDKLKSGIVTVLVATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRT 339
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
RAG+ G AVS V + + KI+R+T++ + ++ G EP+ +
Sbjct: 340 ARAGKKGTAVSFVEAHDYKLLGKIKRYTEEILKARILAGLEPRTK 384
>sp|Q5A4E2|DED1_CANAL ATP-dependent RNA helicase DED1 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=DED1 PE=3 SV=1
Length = 672
Score = 278 bits (710), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 161/399 (40%), Positives = 237/399 (59%), Gaps = 22/399 (5%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F + L EL+++ + +TKPT VQ+ ++P +GRDL+ +QTGSGKT F+ P L
Sbjct: 187 SFTAPPLDELLVENIQLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLS 246
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ + K PV + N +++K+Y P +LV+ PTREL Q+ ++++
Sbjct: 247 E-SYMKGPAPVPESNGAFSSHKVY------------PTILVMAPTRELVSQIYEESKKFS 293
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
Y ++A + GG +QM+ + R ++L+ATPGRL D ++ GK++ ++++ LVLDEA
Sbjct: 294 -YRSWVRACVVYGGADIGQQMRNMDRGCDLLVATPGRLKDLLDRGKVSLANIRYLVLDEA 352
Query: 182 DRMLDMGFINDIEKIVDATPV----TRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
DRMLDMGF I IV+ + RQT++FSAT + +A + KD + L V +
Sbjct: 353 DRMLDMGFEPQIRYIVEECDMPAVKDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVG 412
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+NITQ IL+V+D K+ +LD LL G +VFT TKR AD +AD L GF A
Sbjct: 413 STSENITQKILYVEDDEKKSVILD-LLSANENGLTIVFTETKRMADNLADYLYDQGFPAT 471
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
+HGD Q R + L + G ILVAT VAARG+D+P ++HV NYDLP +DYVHRI
Sbjct: 472 AIHGDRSQYEREKALAAFKNGAAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRI 531
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKK-IERFTK--QQIP 393
GRTGRAG G A + N + +K IE ++ Q++P
Sbjct: 532 GRTGRAGNVGIATAFFNRNNKNVVKGLIELLSEANQEVP 570
>sp|Q6CIV2|DBP2_KLULA ATP-dependent RNA helicase DBP2 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=DBP2 PE=3 SV=1
Length = 554
Score = 277 bits (709), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 161/401 (40%), Positives = 221/401 (55%), Gaps = 30/401 (7%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F G VL + + G+ KPTG+Q Q P A+SGRD+I + TGSGKT ++ LP +
Sbjct: 114 SFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGI- 172
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
++ + + L P +LVL PTRELA+Q+ ++G
Sbjct: 173 ----------------------VHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFG 210
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+I+ + GG+P +Q++ L R EIL+ATPGRLID + GK N + LVLDEA
Sbjct: 211 A-SSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEA 269
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE-KKQ 240
DRMLDMGF I KIVD RQT+++SAT V +A + DP+ +++ S+E
Sbjct: 270 DRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSAS 329
Query: 241 KNITQSILFVDDILHKNRLLDYL--LRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
ITQ + + D ++RL +L + + ++F +TKR D I L G+ A
Sbjct: 330 HTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALA 389
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HGD QN R+ L R GR I+VATDVAARGIDV I +V NYD+P EDYVHRIG
Sbjct: 390 IHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIG 449
Query: 359 RTGRAGRNGFAVSLVNHAER---MNIKKIERFTKQQIPIEV 396
RTGRAG G A+S + + KI R KQ IP E+
Sbjct: 450 RTGRAGSTGTAISFFTEGNKSLGAALIKIMREAKQDIPEEL 490
>sp|P24783|DBP2_YEAST ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=DBP2 PE=1 SV=1
Length = 546
Score = 277 bits (709), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 161/401 (40%), Positives = 222/401 (55%), Gaps = 30/401 (7%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F G + VL + G+ KPTG+Q Q P A+SGRD++ + TGSGKT ++ LP +
Sbjct: 115 FDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGI-- 172
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
++ + + L P +LVL PTRELA+Q+ ++G
Sbjct: 173 ---------------------VHINAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFG- 210
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+ +I+ + GG+P +Q++ LSR EI++ATPGRLID + GK N + LVLDEAD
Sbjct: 211 HSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEAD 270
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE-KKQK 241
RMLDMGF I KIVD RQT+++SAT V +A + DP+ ++V S+E
Sbjct: 271 RMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASH 330
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQ--AVVFTATKRDADIIADRLNISGFLAAPL 299
NITQ + V D ++RL YL + + ++F +TKR D I L G+ A +
Sbjct: 331 NITQIVEVVSDFEKRDRLNKYLETASQDNEYKTLIFASTKRMCDDITKYLREDGWPALAI 390
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD Q R+ L+ R GR I+VATDVAARGIDV I +V NYD+P EDYVHRIGR
Sbjct: 391 HGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGR 450
Query: 360 TGRAGRNGFAVSLVNHAER---MNIKKIERFTKQQIPIEVI 397
TGRAG G A+S + + I R Q IP E++
Sbjct: 451 TGRAGATGTAISFFTEQNKGLGAKLISIMREANQNIPPELL 491
>sp|A6ZRX0|DBP2_YEAS7 ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae (strain
YJM789) GN=DBP2 PE=3 SV=1
Length = 546
Score = 277 bits (709), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 161/401 (40%), Positives = 222/401 (55%), Gaps = 30/401 (7%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F G + VL + G+ KPTG+Q Q P A+SGRD++ + TGSGKT ++ LP +
Sbjct: 115 FDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGI-- 172
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
++ + + L P +LVL PTRELA+Q+ ++G
Sbjct: 173 ---------------------VHINAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFG- 210
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+ +I+ + GG+P +Q++ LSR EI++ATPGRLID + GK N + LVLDEAD
Sbjct: 211 HSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEAD 270
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE-KKQK 241
RMLDMGF I KIVD RQT+++SAT V +A + DP+ ++V S+E
Sbjct: 271 RMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASH 330
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQ--AVVFTATKRDADIIADRLNISGFLAAPL 299
NITQ + V D ++RL YL + + ++F +TKR D I L G+ A +
Sbjct: 331 NITQIVEVVSDFEKRDRLNKYLETASQDNEYKTLIFASTKRMCDDITKYLREDGWPALAI 390
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD Q R+ L+ R GR I+VATDVAARGIDV I +V NYD+P EDYVHRIGR
Sbjct: 391 HGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGR 450
Query: 360 TGRAGRNGFAVSLVNHAER---MNIKKIERFTKQQIPIEVI 397
TGRAG G A+S + + I R Q IP E++
Sbjct: 451 TGRAGATGTAISFFTEQNKGLGAKLISIMREANQNIPPELL 491
>sp|A7TKR8|DED1_VANPO ATP-dependent RNA helicase DED1 OS=Vanderwaltozyma polyspora
(strain ATCC 22028 / DSM 70294) GN=DED1 PE=3 SV=1
Length = 650
Score = 277 bits (709), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 163/400 (40%), Positives = 228/400 (57%), Gaps = 26/400 (6%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F S L L+L+ ++ +TKPT VQ+ ++P GRDL+ +QTGSGKT F+ P L +
Sbjct: 162 FTSPPLDALLLENIILARFTKPTPVQKYSVPIVSRGRDLMACAQTGSGKTGGFLFPVLSE 221
Query: 63 -FASSKNKIPVMKKNLNQNNNKIYTHKERLRF-KPAQPRMLVLTPTRELALQVTAATERY 120
F + + +P R F K A P LVL PTRELA Q+ +++
Sbjct: 222 SFKNGPSPMP---------------ESARKSFVKKAYPTALVLAPTRELATQIYDEAKKF 266
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y ++ + GG Q++ LSR ++L+ATPGRL D + G+++ ++++ LVLDE
Sbjct: 267 -TYRSWVRPTVVYGGSDIGSQIRDLSRGCDLLVATPGRLSDLLERGRVSLANVKYLVLDE 325
Query: 181 ADRMLDMGFINDIEKIVDAT---PV-TRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
ADRMLDMGF I +IVD PV RQT++FSAT + ++A + D + L V +
Sbjct: 326 ADRMLDMGFEPQIRQIVDGCDMPPVGERQTLMFSATFPDDIQHLARDFLSDYIFLSVGKV 385
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+NITQ IL+V+D+ K+ LLD LL G ++F TKR AD + D L + F A
Sbjct: 386 GSTSENITQRILYVEDMDKKSTLLD-LLSASNDGLTLIFVETKRMADELTDFLIMQDFRA 444
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
+HGD Q+ R R L + G +LVAT VAARG+D+P +THV NYDLP +DYVHR
Sbjct: 445 TAIHGDRTQSERERALAAFKNGNANLLVATAVAARGLDIPNVTHVVNYDLPSDIDDYVHR 504
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERF---TKQQIP 393
IGRTGRAG G A + N R +K + Q+IP
Sbjct: 505 IGRTGRAGNTGVATAFFNRGNRNIVKGMYELLAEANQEIP 544
>sp|O13370|DED1_SCHPO ATP-dependent RNA helicase ded1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ded1 PE=1 SV=1
Length = 636
Score = 277 bits (709), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 157/377 (41%), Positives = 221/377 (58%), Gaps = 17/377 (4%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH- 61
F S L+ +L+ + GYT+PT VQ+ +IP SGRDL+ +QTGSGKTA F+ P L
Sbjct: 171 FTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSL 230
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
F +PV +Q+ Y R + A P L+L PTREL Q+ + ++
Sbjct: 231 AFDKGPAAVPV-----DQDAGMGY------RPRKAYPTTLILAPTRELVCQIHEESRKF- 278
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
Y ++ ++ GG Q++ + + ++L ATPGRL+D ++ G+I+ ++++ LVLDEA
Sbjct: 279 CYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEA 338
Query: 182 DRMLDMGFINDIEKIVDATPVT----RQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
DRMLDMGF I IV+ +T RQT++FSAT + +A + KD + L V +
Sbjct: 339 DRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVG 398
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+NITQ ++ V+D ++ LLD L G ++F TKR AD + D L S F A
Sbjct: 399 STSENITQKVVHVEDSEKRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPAT 458
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
+HGD Q R R LE R GR I+VAT VA+RG+D+P +THV NYDLP +DYVHRI
Sbjct: 459 SIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRI 518
Query: 358 GRTGRAGRNGFAVSLVN 374
GRTGRAG G AV+ N
Sbjct: 519 GRTGRAGNTGQAVAFFN 535
>sp|P06634|DED1_YEAST ATP-dependent RNA helicase DED1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=DED1 PE=1 SV=2
Length = 604
Score = 277 bits (709), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 169/426 (39%), Positives = 238/426 (55%), Gaps = 26/426 (6%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F S L L+L+ + +TKPT VQ+ ++P +GRDL+ +QTGSGKT F+ P L +
Sbjct: 144 FTSPPLDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSE 203
Query: 63 -FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
F + + P ++ Y K A P +++ PTRELA Q+ +++
Sbjct: 204 SFKTGPSPQP-------ESQGSFYQRK-------AYPTAVIMAPTRELATQIFDEAKKF- 248
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
Y +KA + GG P Q++ + R ++L+ATPGRL D + GKI+ ++++ LVLDEA
Sbjct: 249 TYRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEA 308
Query: 182 DRMLDMGFINDIEKIV---DATPV-TRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
DRMLDMGF I IV D TPV RQT++FSAT + ++A + D + L V +
Sbjct: 309 DRMLDMGFEPQIRHIVEDCDMTPVGERQTLMFSATFPADIQHLARDFLSDYIFLSVGRVG 368
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+NITQ +L+V++ K+ LLD LL G ++F TKR AD + D L + F A
Sbjct: 369 STSENITQKVLYVENQDKKSALLD-LLSASTDGLTLIFVETKRMADQLTDFLIMQNFRAT 427
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
+HGD Q+ R R L R G +LVAT VAARG+D+P +THV NYDLP +DYVHRI
Sbjct: 428 AIHGDRTQSERERALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRI 487
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKK----IERFTKQQIPIEVINGFEPKKRIRTYYSRY 413
GRTGRAG G A + N +E NI K I Q++P + + R+ R
Sbjct: 488 GRTGRAGNTGLATAFFN-SENSNIVKGLHEILTEANQEVPSFLKDAMMSAPGSRSNSRRG 546
Query: 414 RFNNNN 419
F NN
Sbjct: 547 GFGRNN 552
>sp|A6ZP47|DED1_YEAS7 ATP-dependent RNA helicase DED1 OS=Saccharomyces cerevisiae (strain
YJM789) GN=DED1 PE=3 SV=1
Length = 604
Score = 277 bits (708), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 169/426 (39%), Positives = 238/426 (55%), Gaps = 26/426 (6%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F S L L+L+ + +TKPT VQ+ ++P +GRDL+ +QTGSGKT F+ P L +
Sbjct: 144 FTSPPLDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSE 203
Query: 63 -FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
F + + P ++ Y K A P +++ PTRELA Q+ +++
Sbjct: 204 SFKTGPSPQP-------ESQGSFYQRK-------AYPTAVIMAPTRELATQIFDEAKKF- 248
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
Y +KA + GG P Q++ + R ++L+ATPGRL D + GKI+ ++++ LVLDEA
Sbjct: 249 TYRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEA 308
Query: 182 DRMLDMGFINDIEKIV---DATPV-TRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
DRMLDMGF I IV D TPV RQT++FSAT + ++A + D + L V +
Sbjct: 309 DRMLDMGFEPQIRHIVEDCDMTPVGERQTLMFSATFPADIQHLARDFLSDYIFLSVGRVG 368
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+NITQ +L+V++ K+ LLD LL G ++F TKR AD + D L + F A
Sbjct: 369 STSENITQKVLYVENQDKKSALLD-LLSASTDGLTLIFVETKRMADQLTDFLIMQNFRAT 427
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
+HGD Q+ R R L R G +LVAT VAARG+D+P +THV NYDLP +DYVHRI
Sbjct: 428 AIHGDRTQSERERALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRI 487
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKK----IERFTKQQIPIEVINGFEPKKRIRTYYSRY 413
GRTGRAG G A + N +E NI K I Q++P + + R+ R
Sbjct: 488 GRTGRAGNTGLATAFFN-SENSNIVKGLHEILTEANQEVPSFLKDAMMSAPGSRSNSRRG 546
Query: 414 RFNNNN 419
F NN
Sbjct: 547 GFGRNN 552
>sp|Q755N4|DBP2_ASHGO ATP-dependent RNA helicase DBP2 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DBP2
PE=3 SV=2
Length = 557
Score = 277 bits (708), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 166/414 (40%), Positives = 226/414 (54%), Gaps = 39/414 (9%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F G E VLK + + G+ KPT +Q Q P A+SGRD+I + TGSGKT ++ LP +
Sbjct: 116 FDEAGFPEYVLKEVKEEGFEKPTAIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGI-- 173
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
++ + + L P +LVL PTRELA+Q+ ++G
Sbjct: 174 ---------------------VHINAQPLLSPGDGPVVLVLAPTRELAVQIQKECSKFG- 211
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+I+ + GG+P +Q++ L R EIL+ATPGRLID + GK N + LVLDEAD
Sbjct: 212 RSSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEAD 271
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE-KKQK 241
RMLDMGF I KIVD RQT+++SAT V +A + DP+ + + S+E
Sbjct: 272 RMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQQLARDYLHDPIQVNIGSLELAASH 331
Query: 242 NITQSILFVDDILHKNRLLDYL---LRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
ITQ + V D ++RL+ +L +DK + ++F +TKR D I L G+ A
Sbjct: 332 TITQLVEVVSDFDKRDRLVKHLEIASKDKD-SKIIIFASTKRTCDEITSYLRQDGWPALA 390
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HGD Q R+ L R GR I+VATDVAARGIDV I V NYD+P EDYVHRIG
Sbjct: 391 IHGDKQQQERDWVLNEFRTGRSPIMVATDVAARGIDVKGINFVINYDMPGNIEDYVHRIG 450
Query: 359 RTGRAGRNGFAVSLVNHAERM---NIKKIERFTKQQIPIEVI-------NGFEP 402
RTGRAG G A+S A + + I R KQ+IP +++ GF P
Sbjct: 451 RTGRAGATGTAISFFTEANKTLGAQLISIMREAKQEIPQDLLVYDRAPRGGFHP 504
>sp|Q0DB53|RH52A_ORYSJ DEAD-box ATP-dependent RNA helicase 52A OS=Oryza sativa subsp.
japonica GN=Os06g0602400 PE=2 SV=2
Length = 602
Score = 276 bits (707), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 164/427 (38%), Positives = 233/427 (54%), Gaps = 39/427 (9%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F++ GL E VL+ + + GY PT VQ ++P A++GRDL+ +QTGSGKTAAF LP +
Sbjct: 85 GFEAAGLVEAVLRNVARCGYESPTPVQRYSMPIALAGRDLMACAQTGSGKTAAFCLPVVS 144
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRF--KPAQPRMLVLTPTRELALQVTAATER 119
++ H+ER F A+PR LVL PTRELA Q+ ++
Sbjct: 145 GLVAA--------------GGSGIGHRERSSFNRAAAKPRALVLAPTRELAAQINEEAKK 190
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
+ + ++ + GG P Q++ L R +IL+ATPGRL+D + K++ ++ LV+D
Sbjct: 191 FS-FQTGLRVVVAYGGTPMYNQLRDLERGADILVATPGRLVDMVERSKVSLEAIKYLVMD 249
Query: 180 EADRMLDMGFINDIEKIVDATPV----TRQTMLFSATLDGIVGNMAENITKDPLILKVNS 235
EADRMLDMGF I KIV+ + RQTMLFSAT + +A + + + + V
Sbjct: 250 EADRMLDMGFEPQIRKIVERMNMPRKSVRQTMLFSATFPPEIQRLASDFLSNYIFITVGR 309
Query: 236 IEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQA---------VVFTATKRDADIIA 286
+ I Q + + D + LLD LL+ + VG A +VF TKR+AD +
Sbjct: 310 VGSSTDLIMQKVELLSDGEKRGYLLD-LLQRQSVGVANSKLQQPLTLVFVETKREADSLR 368
Query: 287 DRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDL 346
L GF A +HGD Q R L + + G I+VATDVA+RG+DVP + HV NYDL
Sbjct: 369 YWLYSKGFPATAIHGDRTQQERESALRSFKTGLTPIMVATDVASRGLDVPNVAHVINYDL 428
Query: 347 PKFPEDYVHRIGRTGRAGRNGFAVSLV---NHAERMNIKKIERFTKQQIPIEVINGFEPK 403
PK EDYVHRIGRTGRAG+ G A + +H+ + ++ KQ +P ++ E
Sbjct: 429 PKSIEDYVHRIGRTGRAGKAGSATAFFTESDHSLAKGLLELMTEAKQDVPDWLVQYAE-- 486
Query: 404 KRIRTYY 410
R YY
Sbjct: 487 ---RPYY 490
>sp|P96614|CSHA_BACSU DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus subtilis
(strain 168) GN=cshA PE=1 SV=2
Length = 494
Score = 275 bits (704), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 153/394 (38%), Positives = 229/394 (58%), Gaps = 34/394 (8%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F+ L ++KA+ ++G+ + T +Q Q IP +S +D+I +QTG+GKTAAF +P +
Sbjct: 3 ITFQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLV 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP--RMLVLTPTRELALQVTAATE 118
K P P + +V+ PTRELA+QV+
Sbjct: 63 EKI------------------------------NPESPNIQAIVIAPTRELAIQVSEELY 92
Query: 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+ G K+ K + I GG RQ++ L +NP I++ TPGRL+DH+N I +++ +V+
Sbjct: 93 KIG-QDKRAKVLPIYGGQDIGRQIRALKKNPNIIVGTPGRLLDHINRRTIRLNNVNTVVM 151
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEAD ML+MGFI+DIE I+ P QT+LFSAT+ + +AE +P +KV + E
Sbjct: 152 DEADEMLNMGFIDDIESILSNVPSEHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAKEM 211
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
NI Q L V + K L LL + A+VF TKR D +A+ LN+ G+ A
Sbjct: 212 TVSNIQQFYLEVQE-RKKFDTLTRLLDIQSPELAIVFGRTKRRVDELAEALNLRGYAAEG 270
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HGDL Q R L + G I++LVATDVAARG+D+ +THV+N+D+P+ PE YVHRIG
Sbjct: 271 IHGDLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIG 330
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQI 392
RTGRAG+ G A++ + E+ ++ IE+ TK+++
Sbjct: 331 RTGRAGKTGMAMTFITPREKSMLRAIEQTTKRKM 364
>sp|P24784|DBP1_YEAST ATP-dependent RNA helicase DBP1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=DBP1 PE=1 SV=2
Length = 617
Score = 275 bits (702), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 160/401 (39%), Positives = 226/401 (56%), Gaps = 24/401 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
++F S L EL+++ + +TKPT VQ+ +IP GRDL+ +QTGSGKT F+ P
Sbjct: 154 LDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLF 213
Query: 61 HK-FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
+ F S + +P + Y+ K P LVL PTRELA Q+ +
Sbjct: 214 TELFRSGPSPVP-------EKAQSFYSRK-------GYPSALVLAPTRELATQIFEEARK 259
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
+ Y ++ + GG P QM+ + R ++L+ATPGRL D + GK++ ++++ LVLD
Sbjct: 260 F-TYRSWVRPCVVYGGAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLD 318
Query: 180 EADRMLDMGFINDIEKIVDATPV----TRQTMLFSATLDGIVGNMAENITKDPLILKVNS 235
EADRMLDMGF I IV+ + RQT++FSAT + ++A + + + L V
Sbjct: 319 EADRMLDMGFEPQIRHIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGR 378
Query: 236 IEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFL 295
+ +NITQ IL+VDD+ K+ LLD LL + G ++F TKR AD + D L + F
Sbjct: 379 VGSTSENITQRILYVDDMDKKSALLD-LLSAEHKGLTLIFVETKRMADQLTDFLIMQNFK 437
Query: 296 AAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVH 355
A +HGD Q R R L + ILVAT VAARG+D+P +THV NYDLP +DYVH
Sbjct: 438 ATAIHGDRTQAERERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVH 497
Query: 356 RIGRTGRAGRNGFAVSLVNHAERMNIK---KIERFTKQQIP 393
RIGRTGRAG G A S N + +K +I Q++P
Sbjct: 498 RIGRTGRAGNTGVATSFFNSNNQNIVKGLMEILNEANQEVP 538
>sp|Q75B50|DED1_ASHGO ATP-dependent RNA helicase DED1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DED1
PE=3 SV=2
Length = 623
Score = 274 bits (701), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 158/387 (40%), Positives = 220/387 (56%), Gaps = 22/387 (5%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F S L EL+L+ + +TKPT VQ+ ++P GRDL+ +QTGSGKT F+ P L +
Sbjct: 148 FTSPPLDELLLENIKLARFTKPTPVQKYSVPIVAKGRDLMACAQTGSGKTGGFLFPVLSQ 207
Query: 63 -FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
F++ P + + Y K A P +VL PTRELA Q+ +++
Sbjct: 208 SFSNGPASTP--------DESGYYMRK-------AYPTAVVLAPTRELATQIFDEAKKF- 251
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
Y +K + GG +Q++ L R ++++ATPGRL D + GKI+ ++ LVLDEA
Sbjct: 252 TYRSWVKPCVVYGGADIRQQIRELERGCDLIVATPGRLNDLLERGKISLCSVKYLVLDEA 311
Query: 182 DRMLDMGFINDIEKIVDATPV----TRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
DRMLDMGF I IV+ + RQT++FSAT + ++A + KD + L V +
Sbjct: 312 DRMLDMGFEPQIRHIVEGCDMPTVENRQTLMFSATFPTDIQHLAADFLKDYIFLSVGRVG 371
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+NITQ +L V+DI ++ LLD LL G +VF TKR AD + D L + A
Sbjct: 372 STSENITQKVLHVEDIDKRSVLLD-LLAASDGGLTLVFVETKRMADALTDFLIMQNLSAT 430
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
+HGD Q R R L R GR +LVAT VAARG+D+P +THV NYDLP +DYVHRI
Sbjct: 431 AIHGDRTQAERERALAFFRTGRANVLVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRI 490
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKI 384
GRTGRAG G A + N + +K++
Sbjct: 491 GRTGRAGNTGLATAFFNRGNKNVVKEL 517
>sp|A5DL80|DBP2_PICGU ATP-dependent RNA helicase DBP2 OS=Meyerozyma guilliermondii
(strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC
10279 / NRRL Y-324) GN=DBP2 PE=3 SV=3
Length = 554
Score = 274 bits (701), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 159/403 (39%), Positives = 226/403 (56%), Gaps = 32/403 (7%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F G + VL + + G+ KPT +Q Q P A+SGRD+I + TGSGKT ++ LP++
Sbjct: 126 SFDEAGFPDYVLNEVKQQGFPKPTAIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSI- 184
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
++ + + L P +LVL PTRELA+Q+ ++G
Sbjct: 185 ----------------------VHINAQPLLGPGDGPIVLVLAPTRELAVQIQQECSKFG 222
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+I+ I GG P +Q++ L+R EI +ATPGRLID + +GK N + LVLDEA
Sbjct: 223 A-SSRIRNTCIYGGAPKGQQIRDLARGVEICIATPGRLIDMLETGKTNLRRVTYLVLDEA 281
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE-KKQ 240
DRMLDMGF I KIVD RQT+++SAT V + + DP+ + + S+E
Sbjct: 282 DRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQTLTRDYLNDPIQVTIGSLELAAS 341
Query: 241 KNITQSILFVDDILHKNRLLDYL---LRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
ITQ + + + ++RL+ +L DK + ++F++TKR D I L G+ A
Sbjct: 342 HTITQIVEVLSEFEKRDRLVKHLETATADKEA-KVLIFSSTKRACDEITSYLRADGWPAL 400
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
+HGD QN R+ L + G+ I+VATDVAARGIDV I++V NYD+P EDYVHRI
Sbjct: 401 AIHGDKQQNERDWVLREFKTGKSPIMVATDVAARGIDVKGISYVINYDMPGNIEDYVHRI 460
Query: 358 GRTGRAGRNGFAVSLVNHAERM---NIKKIERFTKQQIPIEVI 397
GRTGRAG G AVSL A ++ KI R Q +P E++
Sbjct: 461 GRTGRAGTTGTAVSLFTEANSKLGGDLCKIMREANQTVPPELL 503
>sp|A6ZWD3|DBP1_YEAS7 ATP-dependent RNA helicase DBP1 OS=Saccharomyces cerevisiae (strain
YJM789) GN=DBP1 PE=3 SV=1
Length = 617
Score = 274 bits (701), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 160/401 (39%), Positives = 226/401 (56%), Gaps = 24/401 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
++F S L EL+++ + +TKPT VQ+ +IP GRDL+ +QTGSGKT F+ P
Sbjct: 154 LDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLF 213
Query: 61 HK-FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
+ F S + +P + Y+ K P LVL PTRELA Q+ +
Sbjct: 214 TELFRSGPSPVP-------EKAQSFYSRK-------GYPSALVLAPTRELATQIFEEARK 259
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
+ Y ++ + GG P QM+ + R ++L+ATPGRL D + GK++ ++++ LVLD
Sbjct: 260 F-TYRSWVRPCVVYGGAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLD 318
Query: 180 EADRMLDMGFINDIEKIVDATPV----TRQTMLFSATLDGIVGNMAENITKDPLILKVNS 235
EADRMLDMGF I IV+ + RQT++FSAT + ++A + + + L V
Sbjct: 319 EADRMLDMGFEPQIRHIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGR 378
Query: 236 IEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFL 295
+ +NITQ IL+VDD+ K+ LLD LL + G ++F TKR AD + D L + F
Sbjct: 379 VGSTSENITQRILYVDDMDKKSALLD-LLSAEHKGLTLIFVETKRMADQLTDFLIMQNFK 437
Query: 296 AAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVH 355
A +HGD Q R R L + ILVAT VAARG+D+P +THV NYDLP +DYVH
Sbjct: 438 ATAIHGDRTQAERERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVH 497
Query: 356 RIGRTGRAGRNGFAVSLVNHAERMNIK---KIERFTKQQIP 393
RIGRTGRAG G A S N + +K +I Q++P
Sbjct: 498 RIGRTGRAGNTGVATSFFNSNNQNIVKGLMEILNEANQEVP 538
>sp|Q6FP38|DBP1_CANGA ATP-dependent RNA helicase DBP1 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=DBP1 PE=3 SV=1
Length = 604
Score = 274 bits (700), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 166/405 (40%), Positives = 229/405 (56%), Gaps = 26/405 (6%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
FKS L EL+L+ + ++KPT VQ+ +IP RDL+ +QTGSGKT F+ P L +
Sbjct: 140 FKSPPLDELLLENVELANFSKPTPVQKYSIPIVTKNRDLMACAQTGSGKTGGFLFPVLSE 199
Query: 63 -FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
F + +P H + P LVL PTRELA+Q+ ++Y
Sbjct: 200 LFLNGPAPLP--------------EHTRHSYMRKCYPSALVLAPTRELAIQIFDEAKKY- 244
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
Y +K + GG P +QM+ + R +L+ATPGRL D + GKI+ +++ LVLDEA
Sbjct: 245 TYRSWVKPYVVYGGAPIGQQMRDMDRGCNLLVATPGRLNDLLERGKISLVNVKYLVLDEA 304
Query: 182 DRMLDMGFINDIEKIVDATPV----TRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
DRMLDMGF I IV+ + RQT++FSAT + ++A + KD + L V +
Sbjct: 305 DRMLDMGFEPQIRHIVEDCDMPSVNDRQTLMFSATFPREIQHLARDFLKDYIFLSVGRVG 364
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+NI Q +LFV+D + LLD L+ + G +VF TKR AD + D L + F A
Sbjct: 365 STSENIQQKVLFVEDYDKNSALLDILINEID-GLTLVFVETKRMADQLTDFLIVQNFKAT 423
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
+HGD Q R R L R G ILVAT VAARG+D+P +T+V NYDLP +DYVHRI
Sbjct: 424 AIHGDRTQAERERALHAFRNGIANILVATAVAARGLDIPNVTNVINYDLPTDIDDYVHRI 483
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKK--IERFTK--QQIPIEVIN 398
GRTGRAG G A S N + MNI K ++ T+ Q++P ++N
Sbjct: 484 GRTGRAGNVGVATSFFN-SNSMNIAKELMDLLTEANQEVPQFLVN 527
>sp|P44586|DEAD_HAEIN Cold-shock DEAD box protein A homolog OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=deaD PE=3
SV=1
Length = 613
Score = 273 bits (698), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 151/392 (38%), Positives = 223/392 (56%), Gaps = 29/392 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F +GL E +LKA+ +G+ P+ +Q+ IP ++G D++ +QTGSGKTAAF LP L
Sbjct: 5 ITFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLL 64
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ S+ P+MLV+ PTRELA+QV A E +
Sbjct: 65 AQIDPSEK----------------------------HPQMLVMAPTRELAIQVADACELF 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y + + +++ GG Y Q++ L + ++++ TPGR++DH+ G +N S L+ +VLDE
Sbjct: 97 VKYAQGTRIVTLYGGQRYDIQLRALKQGAQVVVGTPGRILDHIRRGTLNLSELRFIVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
AD ML MGFI+D+E ++ P QT LFSAT+ + + + DP +K+ +
Sbjct: 157 ADEMLRMGFIDDVETVMAELPENHQTALFSATMPEPIRRITKRFMNDPQEVKIKVNNENA 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+I QS +V + KN L L + A++F TK I + L +GF +A L+
Sbjct: 217 PDIDQSCWYVHGV-RKNEALLRFLEVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALN 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+ Q R +TL+ LR G + I+VATDVAARGID+ I+ V NYD+P E YVHRIGRT
Sbjct: 276 GDMTQQLREQTLDRLRNGSLDIVVATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQI 392
GRAGR+G A+ V ER ++ IE K+ I
Sbjct: 336 GRAGRSGRALLFVEPRERRLLRNIEHLMKKGI 367
>sp|Q6C4D4|DBP2_YARLI ATP-dependent RNA helicase DBP2 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=DBP2 PE=3 SV=1
Length = 552
Score = 270 bits (690), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 159/397 (40%), Positives = 222/397 (55%), Gaps = 30/397 (7%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
NF G VLK + + G+ KPT +Q Q P A++GRD+I + TGSGKT ++ LPA+
Sbjct: 117 NFDEAGFPPYVLKEVKQQGFEKPTAIQCQGWPMALTGRDVIGIASTGSGKTLSYCLPAI- 175
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
++ N + +H + P +LVL PTRELA+Q+ ++G
Sbjct: 176 ---------------VHINAQPMLSHGD-------GPIVLVLAPTRELAVQIQQECSKFG 213
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
KI+ + GG+P +Q++ L+R EI++ATPGRL+D + SGK N + LVLDEA
Sbjct: 214 -KSSKIRNTCVYGGVPRGQQIRDLARGVEIVIATPGRLLDMLESGKTNLRRVTYLVLDEA 272
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE-KKQ 240
DRMLDMGF I KIVD RQT+++SAT V +A + KD + + + S+E
Sbjct: 273 DRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQRLAHDYLKDQIQVNIGSLELSAS 332
Query: 241 KNITQSILFVDDILHKNRLLDYL--LRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
NITQ + + ++RL+ +L + + + + ++FT TKR AD I L G+ A
Sbjct: 333 HNITQVVEVCTEYEKRDRLVKHLETVMENKESKCLIFTGTKRVADDITKFLRQDGWPALA 392
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HGD Q R+ L R+G+ I+VATDVA+RGIDV I V NYD P EDYVHRIG
Sbjct: 393 IHGDKQQQERDWVLNEFRQGKSPIMVATDVASRGIDVKGINFVINYDYPSNSEDYVHRIG 452
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKK---IERFTKQQI 392
RTGRAG G A + R + I R KQ I
Sbjct: 453 RTGRAGTKGTAYTYFTEDNRKQARDLLVILREAKQHI 489
>sp|P21507|SRMB_ECOLI ATP-dependent RNA helicase SrmB OS=Escherichia coli (strain K12)
GN=srmB PE=1 SV=1
Length = 444
Score = 270 bits (689), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 152/392 (38%), Positives = 228/392 (58%), Gaps = 26/392 (6%)
Query: 15 ALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMK 74
AL G+T+PT +Q AIP A+ GRD++ S+ TG+GKTAA++LPAL K
Sbjct: 18 ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRK----- 72
Query: 75 KNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILG 134
K PR+L+LTPTRELA+QV+ + + +I G
Sbjct: 73 -------------------KSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITG 112
Query: 135 GMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIE 194
G+ Y+ ++ S N +I++AT GRL+ ++ + ++ L+LDEADRMLDMGF DIE
Sbjct: 113 GVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIE 172
Query: 195 KIVDATPVTRQTMLFSATLDG-IVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDI 253
I T +QT+LFSATL+G + + AE + +DP+ + N +++K I Q DD+
Sbjct: 173 HIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDL 232
Query: 254 LHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLE 313
HK LL +LL+ +++VF + +A+ L +G L G++ Q RN ++
Sbjct: 233 EHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIK 292
Query: 314 NLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLV 373
L GR+ +LVATDVAARGID+P ++HVFN+D+P+ + Y+HRIGRT RAGR G A+SLV
Sbjct: 293 RLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352
Query: 374 NHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
+ + + K+ R+ ++ I VI+ PK R
Sbjct: 353 EAHDHLLLGKVGRYIEEPIKARVIDELRPKTR 384
>sp|Q6FLF3|DBP2_CANGA ATP-dependent RNA helicase DBP2 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=DBP2 PE=3 SV=1
Length = 544
Score = 269 bits (688), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 161/402 (40%), Positives = 223/402 (55%), Gaps = 32/402 (7%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F G + VLK + G+ KPT +Q Q P A+SGRD++ + TGSGKT ++ LP +
Sbjct: 112 FDEAGFPDYVLKEVKAEGFDKPTSIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGI-- 169
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
++ + + L P +LVL PTRELA+Q+ ++G
Sbjct: 170 ---------------------VHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFG- 207
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+I+ + GG+P +Q++ L R EI++ATPGRLID + +GK N + LVLDEAD
Sbjct: 208 KSSRIRNTCVYGGVPRGQQIRELIRGAEIVIATPGRLIDMLEAGKTNLKRVTYLVLDEAD 267
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE-KKQK 241
RMLDMGF I KIVD RQT+++SAT V +A + DP+ +++ S+E
Sbjct: 268 RMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQQLARDYLNDPIQVQIGSLELAASH 327
Query: 242 NITQSILFVDDILHKNRL---LDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
NITQ + V + ++RL LD +DK + ++F +TKR D I L G+ A
Sbjct: 328 NITQLVEVVSEFEKRDRLVKHLDTASQDKE-SKILIFASTKRTCDEITSYLRQDGWPALA 386
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HGD Q R+ L R G I+VATDVAARGIDV I V NYD+P EDYVHRIG
Sbjct: 387 IHGDKDQRERDWVLNEFRTGNSPIMVATDVAARGIDVKGINFVVNYDMPGNIEDYVHRIG 446
Query: 359 RTGRAGRNGFAVSLV---NHAERMNIKKIERFTKQQIPIEVI 397
RTGRAG G A+S N + ++ I R KQ IP E++
Sbjct: 447 RTGRAGATGTAISFFTEDNKSLGASLISIMREAKQNIPEELM 488
>sp|A6R3L3|DED1_AJECN ATP-dependent RNA helicase DED1 OS=Ajellomyces capsulata (strain
NAm1 / WU24) GN=DED1 PE=3 SV=1
Length = 694
Score = 269 bits (687), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 155/386 (40%), Positives = 216/386 (55%), Gaps = 20/386 (5%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F + LHE +L +V YT PT VQ+ +IP + GRDL+ +QTGSGKT F+ P
Sbjct: 205 FTNPPLHEHLLSNIVLARYTVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFP---- 260
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
++ ++L+ + + R + A P L+L PTREL Q+ ++
Sbjct: 261 ---------ILSQSLHTRGPEAEAARGLGRQQKAYPTALILGPTRELVSQIYDEARKF-C 310
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
Y + + GG Q++ L + +L+ATPGRL+D M G+I+ +H+Q LVLDEAD
Sbjct: 311 YRTALHPRVVYGGAEMGNQLRQLDQGCNVLVATPGRLVDMMERGRISLAHIQYLVLDEAD 370
Query: 183 RMLDMGFINDIEKIVDATPVT----RQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
RMLDMGF I +IV + + RQT++FSAT + +AE KD + L V +
Sbjct: 371 RMLDMGFEPQIRRIVQGSDMPDKHMRQTLMFSATFPPDIQKLAEEFLKDHIFLSVGRVGS 430
Query: 239 KQKNITQSILFVDDILHKNR-LLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+NITQ I+ + K+ LLD L D G +VF TKR AD+++D L A
Sbjct: 431 TSENITQRIVECESDKDKDSALLDILCSDS-TGLTLVFVETKRQADMLSDFLLDHRLPAT 489
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
+HGD Q R R LE R GR ILVAT VAARG+D+P +THV NYDLP +DYVHRI
Sbjct: 490 AIHGDRTQRERERALELFRTGRCPILVATAVAARGLDIPNVTHVINYDLPNEIDDYVHRI 549
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKK 383
GRTGRAG G + + + ++ I +
Sbjct: 550 GRTGRAGNTGISTAFFSRSKNFKIAR 575
>sp|Q2HBE7|DED1_CHAGB ATP-dependent RNA helicase DED1 OS=Chaetomium globosum (strain ATCC
6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970)
GN=DED1 PE=3 SV=1
Length = 688
Score = 268 bits (686), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 155/401 (38%), Positives = 223/401 (55%), Gaps = 23/401 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L +L + Y PT VQ+ +IP I+GRDL+ +QTGSGKT F+ P +
Sbjct: 198 LTFSNPPLDAHLLSNIELARYQIPTPVQKYSIPIVINGRDLMACAQTGSGKTGGFLFPIM 257
Query: 61 HK-FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
H+ F + IP R + A P L+L PTREL Q+ +
Sbjct: 258 HQSFTQGPSPIPAQSGG-------------GYRQRKAYPTALILAPTRELVSQIYEEARK 304
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
+ Y ++ + GG Q++ + R ++L+ATPGRL+D + G+I+ +++ LVLD
Sbjct: 305 FA-YRSWVRPCVVYGGADIGSQLRQMERGCDLLVATPGRLVDLIERGRISLCNIKYLVLD 363
Query: 180 EADRMLDMGFINDIEKIVDAT--PVT--RQTMLFSATLDGIVGNMAENITKDPLILKVNS 235
EADRMLDMGF I +IV P T RQT++FSAT + +A++ D + L V
Sbjct: 364 EADRMLDMGFEPQIRRIVQGEDMPTTGQRQTLMFSATFPRDIQMLAQDFLNDYVFLSVGR 423
Query: 236 IEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFL 295
+ +NITQ + +V+D+ ++ LLD +L G ++F TKR AD ++D L F
Sbjct: 424 VGSTSENITQKVEYVEDVDKRSVLLD-ILHTHAGGLTLIFVETKRMADSLSDFLINQNFP 482
Query: 296 AAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVH 355
A +HGD Q R R LE R G+ ILVAT VAARG+D+P +THV NYDLP +DYVH
Sbjct: 483 ATSIHGDRTQRERERALELFRNGKCPILVATAVAARGLDIPNVTHVINYDLPTDVDDYVH 542
Query: 356 RIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTK---QQIP 393
RIGRTGRAG G A + N R ++++ K Q++P
Sbjct: 543 RIGRTGRAGNTGIATAFFNRGNRGIVRELLDLLKEANQEVP 583
>sp|Q65N62|CSHA_BACLD DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus licheniformis
(strain DSM 13 / ATCC 14580) GN=cshA PE=3 SV=1
Length = 487
Score = 268 bits (686), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 150/397 (37%), Positives = 226/397 (56%), Gaps = 40/397 (10%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F+ L + KA+ ++G+ + T +Q Q IP ++ +D+I +QTG+GKTAAF +P +
Sbjct: 3 ITFQDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLV 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP--RMLVLTPTRELALQVTAATE 118
K P P + +V+ PTRELA+QV+
Sbjct: 63 EKI------------------------------NPESPNIQAIVIAPTRELAIQVSEELY 92
Query: 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+ G K+ + + I GG RQ++ L +NP I++ TPGRL+DH+N + + +VL
Sbjct: 93 KIG-QDKRARVLPIYGGQDIGRQIRALKKNPHIIVGTPGRLLDHINRRTMRLQTVNTVVL 151
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEAD ML+MGFI DIE I+ P QT+LFSAT+ + +AE +P +KV + E
Sbjct: 152 DEADEMLNMGFIEDIESILSNVPAEHQTLLFSATMPAPIKRIAERFMTNPEHVKVKAKEM 211
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQ---AVVFTATKRDADIIADRLNISGFL 295
NI Q L V H+ + D L R + A+VF TKR D + + LN+ G+
Sbjct: 212 TVSNIQQFYLEV----HERKKFDTLTRLLDIQSPELAIVFGRTKRRVDELTEALNLRGYT 267
Query: 296 AAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVH 355
A +HGDL Q R L ++G I++LVATDVAARG+D+ +THV+N+D+P+ PE YVH
Sbjct: 268 AEGIHGDLTQAKRMVALRKFKQGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVH 327
Query: 356 RIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQI 392
RIGRTGRAG+ G A++ + E+ ++ IE+ TK+++
Sbjct: 328 RIGRTGRAGKTGMAMTFITPREKDMLRAIEQTTKRKM 364
>sp|Q6CLR3|DED1_KLULA ATP-dependent RNA helicase DED1 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=DED1 PE=3 SV=1
Length = 627
Score = 268 bits (685), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 156/399 (39%), Positives = 222/399 (55%), Gaps = 24/399 (6%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F S L L+L + +TKPT VQ+ ++P +GRDL+ +QTGSGKT F+ P L +
Sbjct: 161 FHSPPLDPLLLDNIKLARFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSE 220
Query: 63 -FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
F+S P N K+Y P ++L PTRELA Q+ +++
Sbjct: 221 SFSSGPASTPEAAGN--SYIKKVY------------PTAVILAPTRELATQIYDEAKKF- 265
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
Y +K + + GG Q++ + +L+ATPGRL D + I+ ++++ LVLDEA
Sbjct: 266 TYRSWVKPMVVYGGASIDNQIKQMRYGCNLLVATPGRLTDLLERRYISLANVKYLVLDEA 325
Query: 182 DRMLDMGFINDIEKIVDATPV----TRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
DRMLDMGF I +IV+ + + RQT++FSAT + ++A + KD + L V +
Sbjct: 326 DRMLDMGFEPQIRRIVEGSDMPSVDNRQTLMFSATFPSEIQHLASDFLKDYVFLSVGRVG 385
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+NITQ IL+V+D + LLD LL G ++F TKR AD + D L + GF A
Sbjct: 386 STSENITQKILYVEDFDKNDTLLD-LLAASNEGLTLIFVETKRAADSLTDFLIMEGFKAT 444
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
+HGD Q R R L + GR ILVAT VAARG+D+P +THV N+DLP +DYVHRI
Sbjct: 445 AIHGDRTQGERERALSAFKTGRATILVATAVAARGLDIPNVTHVINFDLPNDIDDYVHRI 504
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERF---TKQQIP 393
GRTGRAG G A + N + K++ Q++P
Sbjct: 505 GRTGRAGNTGVATTFFNRGNKNVAKELVSLLSEANQEVP 543
>sp|Q9P6U9|DED1_NEUCR ATP-dependent RNA helicase ded-1 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=ded-1 PE=3 SV=1
Length = 688
Score = 268 bits (684), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 152/381 (39%), Positives = 214/381 (56%), Gaps = 22/381 (5%)
Query: 21 YTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK-FASSKNKIPVMKKNLNQ 79
Y PT VQ+ +IP + GRDL+ +QTGSGKT F+ P L + F + + IP
Sbjct: 214 YNVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQSFHTGPSPIPASAAGAYG 273
Query: 80 NNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYL 139
K Y P L+L PTREL Q+ ++ Y ++ + GG
Sbjct: 274 RQRKAY------------PTALILAPTRELVSQIYDEARKFA-YRSWVRPCVVYGGADIG 320
Query: 140 RQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDA 199
Q++ + R ++L+ATPGRL+D + G+I+ +++ LVLDEADRMLDMGF I +IV+
Sbjct: 321 SQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEG 380
Query: 200 TPVT----RQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILH 255
+ RQT++FSAT + +A + KD + L V + +NITQ + +V+DI
Sbjct: 381 EDMPKVNDRQTLMFSATFPRDIQILARDFLKDYIFLSVGRVGSTSENITQKVEYVEDIDK 440
Query: 256 KNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENL 315
++ LLD +L G ++F TKR AD ++D L F A +HGD Q R R LE
Sbjct: 441 RSVLLD-ILHTHAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEMF 499
Query: 316 RRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNH 375
R GR ILVAT VAARG+D+P +THV NYDLP +DYVHRIGRTGRAG G A + N
Sbjct: 500 RNGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNR 559
Query: 376 AERMNIKKIERFTK---QQIP 393
R ++++ K Q++P
Sbjct: 560 GNRGVVRELLELLKEANQEVP 580
>sp|A7EJY3|DED1_SCLS1 ATP-dependent RNA helicase ded1 OS=Sclerotinia sclerotiorum (strain
ATCC 18683 / 1980 / Ss-1) GN=ded1 PE=3 SV=1
Length = 678
Score = 267 bits (683), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 155/401 (38%), Positives = 223/401 (55%), Gaps = 22/401 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + ++K + Y PT VQ+ +IP + GRDL+ +QTGSGKT F+ P L
Sbjct: 186 LKFTNPPLDDHLIKNIELAHYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPIL 245
Query: 61 HK-FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
+ F + + IP K Y P L+L PTREL Q+ + +
Sbjct: 246 SQAFQTGPSPIPANAAGSFGRTRKAY------------PTSLILAPTRELVSQIFDESRK 293
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
+ Y ++ + GG Q++ + R ++L+ATPGRL+D + G+I+ +++ LVLD
Sbjct: 294 FA-YRSWVRPCVVYGGADIGSQLRQMERGCDLLVATPGRLVDLIERGRISLQNIKYLVLD 352
Query: 180 EADRMLDMGFINDIEKIVDATPV----TRQTMLFSATLDGIVGNMAENITKDPLILKVNS 235
EADRMLDMGF I +IV+ + RQT++FSAT + +A + KD + L V
Sbjct: 353 EADRMLDMGFEPQIRRIVEGEDMPGVQNRQTLMFSATFPRDIQMLARDFLKDYVFLSVGR 412
Query: 236 IEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFL 295
+ +NITQ + +V+DI ++ LLD +L G ++F TKR AD ++D L F
Sbjct: 413 VGSTSENITQKVEYVEDIDKRSVLLD-ILHTHGAGLTLIFVETKRMADSLSDFLINQNFP 471
Query: 296 AAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVH 355
A +HGD Q R R LE R GR ILVAT VAARG+D+P +THV NYDLP +DYVH
Sbjct: 472 ATSIHGDRTQRERERALEMFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVH 531
Query: 356 RIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTK---QQIP 393
RIGRTGRAG G + + N R ++ + K Q+IP
Sbjct: 532 RIGRTGRAGNTGISTAFFNRGNRGVVRDLIELLKEANQEIP 572
>sp|Q1DJF0|DED1_COCIM ATP-dependent RNA helicase DED1 OS=Coccidioides immitis (strain RS)
GN=DED1 PE=3 SV=2
Length = 665
Score = 267 bits (683), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 154/381 (40%), Positives = 219/381 (57%), Gaps = 20/381 (5%)
Query: 21 YTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK-FASSKNKIPVMKKNLNQ 79
Y PT VQ+ +IP + GRDL+ +QTGSGKT F+ P L + F + + +P Q
Sbjct: 201 YKTPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQAFKNGPSAVPT------Q 254
Query: 80 NNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYL 139
N N+ ++R A P L+L PTREL Q+ ++ Y ++ + GG
Sbjct: 255 NANQFSYGRQRK----AYPTSLILAPTRELVSQIYDEARKFA-YRSWVRPCVVYGGADIG 309
Query: 140 RQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIV-- 197
Q++ + R ++L+ATPGRL+D + G+I+ +++ LVLDEADRMLDMGF I +IV
Sbjct: 310 SQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEG 369
Query: 198 -DATPVT-RQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILH 255
D PV RQT++FSAT + +A + KD + L V + +NITQ + +V+D
Sbjct: 370 EDMPPVNGRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDADK 429
Query: 256 KNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENL 315
++ LLD +L G ++F TKR AD +++ L F A +HGD Q R R LE
Sbjct: 430 RSVLLD-ILHTHGTGLTLIFVETKRMADSLSEFLINQNFPATAIHGDRTQRERERALEYF 488
Query: 316 RRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNH 375
R GR ILVAT VAARG+D+P +THV NYDLP +DYVHRIGRTGRAG G + + N
Sbjct: 489 RNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGLSTAFFNR 548
Query: 376 AERMNIKKIERFTK---QQIP 393
R ++ + K Q++P
Sbjct: 549 GNRGVVRDLIELLKEAHQEVP 569
>sp|Q0UWA6|DED1_PHANO ATP-dependent RNA helicase DED1 OS=Phaeosphaeria nodorum (strain
SN15 / ATCC MYA-4574 / FGSC 10173) GN=DED1 PE=3 SV=1
Length = 696
Score = 267 bits (682), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 156/399 (39%), Positives = 222/399 (55%), Gaps = 22/399 (5%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL-H 61
F + L + +L + GY PT VQ+ +IP + GRDL+ +QTGSGKT F+ P L
Sbjct: 203 FTNPPLDDHLLSNIELSGYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILAQ 262
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
F + + P + K Y P L+L PTREL Q+ ++
Sbjct: 263 AFQNGPSPPPTAQAGGYGRQRKAY------------PTSLILAPTRELVSQIFDEARKFA 310
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
Y ++ + GG Q++ + R ++L+ATPGRL+D + G+I+ + ++ LVLDEA
Sbjct: 311 -YRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLASIKYLVLDEA 369
Query: 182 DRMLDMGFINDIEKIVDAT--PVT--RQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
DRMLDMGF I +IV+ P T RQT++FSAT + +A + K+ + L V +
Sbjct: 370 DRMLDMGFEPQIRRIVEGEDMPPTAGRQTLMFSATFPRDIQMLARDFLKEYIFLSVGRVG 429
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+NITQ I +V+D ++ LLD +L G +++F TKR AD ++D L GF A
Sbjct: 430 STSENITQKIEYVEDADKRSVLLD-ILHTHGAGLSLIFVETKRMADSLSDFLINQGFPAT 488
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
+HGD Q R + LE R GR ILVAT VAARG+D+P +THV NYDLP +DYVHRI
Sbjct: 489 SIHGDRTQREREKALEMFRSGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRI 548
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTK---QQIP 393
GRTGRAG G A + N R ++ + K Q++P
Sbjct: 549 GRTGRAGNTGIATAFFNRGNRGVVRDLLDLLKEANQEVP 587
>sp|Q6BY27|DBP2_DEBHA ATP-dependent RNA helicase DBP2 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DBP2 PE=3 SV=1
Length = 536
Score = 266 bits (681), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 157/402 (39%), Positives = 224/402 (55%), Gaps = 30/402 (7%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F G + VLK + + G+ KPT +Q Q P A+SGRD++ + TGSGKT ++ LP++
Sbjct: 106 SFDEAGFPDYVLKEVKQQGFPKPTSIQCQGWPMALSGRDMVGIASTGSGKTLSYCLPSI- 164
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
++ + + L P +LVL PTRELA+Q+ ++G
Sbjct: 165 ----------------------VHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECSKFG 202
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+I+ + GG P +Q++ L+R EI +ATPGRLID + +GK N + LVLDEA
Sbjct: 203 -SSSRIRNTCVYGGAPKGQQIRDLARGVEICIATPGRLIDMLETGKTNLRRVTYLVLDEA 261
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE-KKQ 240
DRMLDMGF I KIVD RQT+++SAT V + + DP+ + V S+E
Sbjct: 262 DRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQALTRDYLNDPIQVTVGSLELAAS 321
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQA--VVFTATKRDADIIADRLNISGFLAAP 298
ITQ + V + ++RL+ +L +A ++F +TKR D I + L G+ A
Sbjct: 322 HTITQLVEVVTEFEKRDRLIKHLETATADPEAKCLIFASTKRTCDEITNYLRADGWPALA 381
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HGD Q R+ L+ + G+ I+VATDVAARGIDV I++V N D+P EDYVHRIG
Sbjct: 382 IHGDKQQGERDWVLKEFKTGKSPIMVATDVAARGIDVKGISYVINLDMPGNIEDYVHRIG 441
Query: 359 RTGRAGRNGFAVSLV---NHAERMNIKKIERFTKQQIPIEVI 397
RTGRAG G AVS N ++ KI R Q IP E++
Sbjct: 442 RTGRAGSTGTAVSFFTDNNSKLGGDLCKIMREANQTIPPELM 483
>sp|Q5RF43|DDX3Y_PONAB ATP-dependent RNA helicase DDX3Y OS=Pongo abelii GN=DDX3Y PE=2 SV=1
Length = 658
Score = 266 bits (681), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 161/409 (39%), Positives = 223/409 (54%), Gaps = 28/409 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
NF I + E+++ + YT+PT VQ+ AIP RDL+ +QTGSGKTAAF+LP L
Sbjct: 179 NFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILS 238
Query: 62 KFASSK--NKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
+ + + +K+N K Y P LVL PTRELA+Q+ +
Sbjct: 239 QIYTDGPGEALKAVKENGRYGRRKQY------------PISLVLAPTRELAVQIYEEARK 286
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
+ Y +++ + GG +Q++ L R +L+ATPGRL+D M GKI + LVLD
Sbjct: 287 FS-YRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 345
Query: 180 EADRMLDMGFINDIEKIV--DATPV--TRQTMLFSATLDGIVGNMAENITKDPLILKVNS 235
EADRMLDMGF I +IV D P R TM+FSAT + +A + + + L V
Sbjct: 346 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 405
Query: 236 IEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFL 295
+ +NITQ +++V+D+ ++ LLD L R +VF TK+ AD + D L G+
Sbjct: 406 VGSTSENITQKVVWVEDLDKRSFLLDLLGATGRDSLTLVFVETKKGADSLEDFLYHEGYA 465
Query: 296 AAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVH 355
+HGD Q R L R G+ ILVAT VAARG+D+ + HV N+DLP E+YVH
Sbjct: 466 CTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVH 525
Query: 356 RIGRTGRAGRNGFAVSLVNHAERMNIKK------IERFTKQQIPIEVIN 398
RIGRTGR G G A S N + MNI K +E KQ++P + N
Sbjct: 526 RIGRTGRVGNLGLATSFFNE-KNMNITKDLLDLLVE--AKQEVPSWLEN 571
>sp|A5DZE6|DED1_LODEL ATP-dependent RNA helicase DED1 OS=Lodderomyces elongisporus
(strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 /
NRRL YB-4239) GN=DED1 PE=3 SV=1
Length = 664
Score = 266 bits (680), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 150/377 (39%), Positives = 221/377 (58%), Gaps = 19/377 (5%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F + L EL+++ + +TKPT VQ+ ++P +GRDL+ +QTGSGKT F+ P L
Sbjct: 176 SFTAPPLDELLVENIKLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLS 235
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ + P+ + +++K+Y P +LV+ PTREL Q+ ++++
Sbjct: 236 E-SYMNGPAPIPESTGAFSSHKVY------------PTILVMAPTRELVSQIYDESKKFA 282
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
Y ++ + GG Q++ L R ++L+ATPGRL D + G+++ ++++ LVLDEA
Sbjct: 283 -YRSWVRPCVVYGGADIGNQIRQLDRGCDLLVATPGRLKDLLERGRVSLANIKYLVLDEA 341
Query: 182 DRMLDMGFINDIEKIVDATPVT----RQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
DRMLDMGF I IV + RQT++FSAT + +A + KD + L V +
Sbjct: 342 DRMLDMGFEPQIRHIVQECDMPDVQDRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVG 401
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+NITQ +L+V+D K+ +LD LL G +VFT TKR AD +AD L GF A
Sbjct: 402 STSENITQKVLYVEDEEKKSVILD-LLNANSEGLTIVFTETKRMADNLADFLYDQGFPAT 460
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
+HGD Q R + L + G+ ILVAT VAARG+D+P ++HV NYDLP +DYVHRI
Sbjct: 461 AIHGDRSQYEREKALAAFKSGQAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRI 520
Query: 358 GRTGRAGRNGFAVSLVN 374
GRTGRAG G A + N
Sbjct: 521 GRTGRAGNVGIATAFFN 537
>sp|A5DQS0|DED1_PICGU ATP-dependent RNA helicase DED1 OS=Meyerozyma guilliermondii
(strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC
10279 / NRRL Y-324) GN=DED1 PE=3 SV=3
Length = 637
Score = 266 bits (680), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 157/399 (39%), Positives = 228/399 (57%), Gaps = 24/399 (6%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F + L L+++ + +TKPT VQ+ ++P SGRDL+ +QTGSGKT F+ P L +
Sbjct: 171 FTAPPLDPLIVENIKLSRFTKPTPVQKYSVPIVASGRDLMACAQTGSGKTGGFLFPVLSE 230
Query: 63 -FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ + + +P ++ +HK P LV+ PTREL Q+ +++
Sbjct: 231 SYMNGPDAVP-------ESQGAFSSHK-------VHPTALVMAPTRELVSQIFEEAKKFS 276
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
Y ++ + GG Q++ L R ++L+ATPGRL D + G+++ S+++ LVLDEA
Sbjct: 277 -YRSWVRPCVVYGGADIGTQIRNLDRGCDLLVATPGRLKDLLERGRVSLSNIKYLVLDEA 335
Query: 182 DRMLDMGFINDIEKIVDATPV----TRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
DRMLDMGF I IV + +RQT++FSAT + +A + KD + L V +
Sbjct: 336 DRMLDMGFEPQIRHIVQECDMPGVESRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVG 395
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+NITQ +L+V+D K+ LLD LL G ++FT TKR AD +AD L GF A
Sbjct: 396 STSENITQKVLYVEDDEKKSVLLD-LLSANDNGLTIIFTETKRMADNLADFLYDQGFPAT 454
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
+HGD Q R + L + G ILVAT VAARG+D+P ++HV NYDLP +DYVHRI
Sbjct: 455 AIHGDRSQYEREKALAAFKSGTAPILVATAVAARGLDIPNVSHVVNYDLPGDIDDYVHRI 514
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKK-IERFTK--QQIP 393
GRTGRAG G A + N R +K IE ++ Q++P
Sbjct: 515 GRTGRAGNVGIATAFFNRNNRNVVKGMIELLSEANQEVP 553
>sp|Q4I7K4|DED1_GIBZE ATP-dependent RNA helicase DED1 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=DED1 PE=3
SV=1
Length = 675
Score = 266 bits (679), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 153/399 (38%), Positives = 221/399 (55%), Gaps = 22/399 (5%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F + L E + + + Y PT VQ+ +IP GRDL+ +QTGSGKT F+ P L +
Sbjct: 188 FTTPPLDEHLCRNIELAHYKVPTPVQKYSIPIVSGGRDLMACAQTGSGKTGGFLFPILSQ 247
Query: 63 -FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
F + + +P K Y P L+L PTREL Q+ + ++
Sbjct: 248 AFINGPSAVPANAAGQFGRQRKAY------------PTSLILAPTRELVSQIFDESRKFA 295
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
Y ++ + GG Q++ + R ++L+ATPGRL+D + G+I+ +++ LVLDEA
Sbjct: 296 -YRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLQNIKYLVLDEA 354
Query: 182 DRMLDMGFINDIEKIVDATPVT----RQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
DRMLDMGF I +IV+ + RQT++FSAT + +A + KD + L V +
Sbjct: 355 DRMLDMGFEPQIRRIVEGEDMPQVQDRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVG 414
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+NITQ + +V+D+ ++ LLD +L G ++F TKR AD ++D L F A
Sbjct: 415 STSENITQKVEYVEDVDKRSVLLD-ILHSHANGLTLIFVETKRMADSLSDFLINQNFPAT 473
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
+HGD Q R R LE R GR ILVAT VAARG+D+P +THV NYDLP +DYVHRI
Sbjct: 474 SIHGDRTQRERERALEFFRNGRCPILVATAVAARGLDIPHVTHVINYDLPTDVDDYVHRI 533
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTK---QQIP 393
GRTGRAG G A + N R ++++ K Q++P
Sbjct: 534 GRTGRAGNTGIATAFFNRGNRGIVRELMDLLKEANQEVP 572
>sp|Q8TFK8|DED1_CANGA ATP-dependent RNA helicase DED1 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=DED1 PE=3 SV=1
Length = 617
Score = 265 bits (678), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 159/398 (39%), Positives = 222/398 (55%), Gaps = 22/398 (5%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F S L L+L+ + +TKPT VQ+ ++P GRDL+ +QTGSGKT F+ P L +
Sbjct: 147 FTSPPLDSLLLENIKLARFTKPTPVQKYSVPIVSKGRDLMACAQTGSGKTGGFLFPVLSE 206
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
+ + N Y+++ + A P +V+ PTRELA Q+ +++
Sbjct: 207 --------SFLTGPAEKAANDGYSYQRK-----AFPTAVVMAPTRELATQIFDEAKKF-C 252
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
Y +K + GG P QM+ + ++L+ATPGRL D + GK++ S+++ LVLDEAD
Sbjct: 253 YRSWVKPCVVYGGAPIGNQMREMDHGCDLLVATPGRLNDLLERGKVSLSNVKYLVLDEAD 312
Query: 183 RMLDMGFINDIEKIVDAT--PVT--RQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
RMLDMGF I IV+ P T RQT++FSAT + ++A + D + L V +
Sbjct: 313 RMLDMGFEPQIRHIVEDCDMPPTGERQTLMFSATFPHDIQHLARDFLHDYIFLSVGRVGS 372
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+NITQ IL+V++ + LLD LL ++F TKR AD + D L + F A
Sbjct: 373 TSENITQRILYVENRDKNSALLD-LLAASNDNLTLIFVETKRMADQLTDFLIMQNFSATA 431
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HGD Q R R L R GR ILVAT VAARG+D+P +THV NYDLP +DYVHRIG
Sbjct: 432 IHGDRSQAERERALAAFRSGRANILVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIG 491
Query: 359 RTGRAGRNGFAVSLVNHAERMNIK---KIERFTKQQIP 393
RTGRAG G A + N +K +I Q+IP
Sbjct: 492 RTGRAGNTGVATAFFNRDNNNIVKGLYEILEEANQEIP 529
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 158,768,777
Number of Sequences: 539616
Number of extensions: 6611548
Number of successful extensions: 28618
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1711
Number of HSP's successfully gapped in prelim test: 141
Number of HSP's that attempted gapping in prelim test: 22142
Number of HSP's gapped (non-prelim): 2663
length of query: 453
length of database: 191,569,459
effective HSP length: 121
effective length of query: 332
effective length of database: 126,275,923
effective search space: 41923606436
effective search space used: 41923606436
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)