Query psy9399
Match_columns 453
No_of_seqs 231 out of 2549
Neff 10.2
Searched_HMMs 46136
Date Fri Aug 16 18:09:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9399.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9399hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0330|consensus 100.0 9.7E-66 2.1E-70 455.1 32.5 369 1-399 61-430 (476)
2 KOG0331|consensus 100.0 1.2E-63 2.6E-68 470.8 35.6 365 2-390 92-462 (519)
3 PRK11776 ATP-dependent RNA hel 100.0 3.9E-62 8.4E-67 481.4 45.2 368 1-398 4-371 (460)
4 COG0513 SrmB Superfamily II DN 100.0 2.6E-62 5.6E-67 482.2 42.6 366 2-393 30-398 (513)
5 PRK04837 ATP-dependent RNA hel 100.0 1.7E-61 3.8E-66 471.7 44.4 372 1-395 8-381 (423)
6 PRK10590 ATP-dependent RNA hel 100.0 2.2E-61 4.9E-66 473.7 44.1 379 1-403 1-379 (456)
7 PRK11192 ATP-dependent RNA hel 100.0 6.5E-61 1.4E-65 470.0 46.3 380 1-405 1-381 (434)
8 PRK11634 ATP-dependent RNA hel 100.0 1.1E-60 2.3E-65 479.0 44.3 367 1-396 6-372 (629)
9 PRK04537 ATP-dependent RNA hel 100.0 1.5E-59 3.2E-64 468.5 43.2 371 2-395 10-383 (572)
10 PTZ00110 helicase; Provisional 100.0 2.1E-59 4.5E-64 466.1 43.4 366 1-391 130-499 (545)
11 KOG0328|consensus 100.0 7E-60 1.5E-64 400.8 28.6 363 1-392 27-389 (400)
12 KOG0340|consensus 100.0 1.3E-59 2.9E-64 411.3 30.5 368 1-397 7-382 (442)
13 KOG0333|consensus 100.0 2.9E-59 6.3E-64 428.2 33.8 366 1-387 245-635 (673)
14 PLN00206 DEAD-box ATP-dependen 100.0 2E-58 4.4E-63 457.9 42.6 366 1-390 121-489 (518)
15 KOG0345|consensus 100.0 9E-59 2E-63 420.1 35.3 361 1-385 4-373 (567)
16 PRK01297 ATP-dependent RNA hel 100.0 2.3E-57 4.9E-62 448.5 45.2 371 1-394 87-460 (475)
17 KOG0342|consensus 100.0 1.2E-58 2.5E-63 422.2 33.1 359 2-385 83-446 (543)
18 KOG0338|consensus 100.0 1.8E-59 4E-64 428.0 27.2 361 1-387 181-544 (691)
19 PTZ00424 helicase 45; Provisio 100.0 2E-57 4.4E-62 442.4 42.9 364 1-393 28-391 (401)
20 KOG0343|consensus 100.0 3E-56 6.6E-61 410.5 31.9 367 2-398 70-442 (758)
21 KOG0348|consensus 100.0 2.6E-56 5.6E-61 409.6 29.9 365 1-387 136-565 (708)
22 KOG0326|consensus 100.0 2.1E-57 4.5E-62 392.1 20.4 361 2-393 86-446 (459)
23 KOG0346|consensus 100.0 6.4E-56 1.4E-60 398.2 29.2 367 2-391 20-425 (569)
24 KOG0335|consensus 100.0 9.9E-56 2.1E-60 409.9 29.5 370 2-390 75-458 (482)
25 KOG0336|consensus 100.0 1.5E-54 3.2E-59 386.0 27.5 365 6-395 225-594 (629)
26 KOG0341|consensus 100.0 4.4E-54 9.4E-59 380.6 16.9 364 2-387 171-540 (610)
27 KOG0347|consensus 100.0 1.9E-53 4.2E-58 391.9 19.5 373 3-393 183-587 (731)
28 KOG0339|consensus 100.0 3.2E-51 7E-56 373.7 32.0 361 1-385 223-584 (731)
29 TIGR03817 DECH_helic helicase/ 100.0 4.1E-50 8.8E-55 410.5 39.6 350 7-394 20-406 (742)
30 KOG0332|consensus 100.0 1E-50 2.2E-55 357.7 25.9 363 1-395 90-463 (477)
31 KOG0327|consensus 100.0 1.4E-50 3.1E-55 359.7 25.7 360 2-393 27-387 (397)
32 KOG0334|consensus 100.0 8.5E-49 1.8E-53 388.5 30.6 364 1-388 365-732 (997)
33 TIGR00614 recQ_fam ATP-depende 100.0 7.1E-48 1.5E-52 379.3 36.1 323 18-384 6-341 (470)
34 PLN03137 ATP-dependent DNA hel 100.0 1.4E-47 3E-52 389.4 38.9 337 2-383 436-794 (1195)
35 KOG0337|consensus 100.0 2.4E-49 5.2E-54 354.2 20.9 362 2-392 22-384 (529)
36 KOG4284|consensus 100.0 8.8E-49 1.9E-53 367.1 24.1 348 2-378 26-381 (980)
37 KOG0350|consensus 100.0 7.8E-48 1.7E-52 351.4 26.3 360 3-391 129-555 (620)
38 PRK11057 ATP-dependent DNA hel 100.0 2E-46 4.4E-51 378.2 38.5 331 6-382 7-349 (607)
39 PRK02362 ski2-like helicase; P 100.0 7.2E-47 1.6E-51 391.0 35.9 337 1-377 1-398 (737)
40 TIGR01389 recQ ATP-dependent D 100.0 7.2E-46 1.6E-50 375.6 36.3 323 14-382 3-337 (591)
41 PRK00254 ski2-like helicase; P 100.0 1.6E-45 3.4E-50 380.1 36.0 339 1-377 1-389 (720)
42 KOG0344|consensus 100.0 7.6E-46 1.7E-50 346.2 24.8 361 6-390 141-509 (593)
43 PRK13767 ATP-dependent helicas 100.0 3.9E-44 8.5E-49 373.7 39.2 343 8-375 18-397 (876)
44 PRK01172 ski2-like helicase; P 100.0 8.2E-44 1.8E-48 366.0 32.4 342 1-388 1-388 (674)
45 TIGR00580 mfd transcription-re 100.0 1E-42 2.3E-47 359.1 38.8 321 8-376 436-770 (926)
46 PRK10689 transcription-repair 100.0 4.5E-42 9.7E-47 361.7 39.1 319 10-376 588-919 (1147)
47 COG1201 Lhr Lhr-like helicases 100.0 2.2E-42 4.8E-47 344.8 33.9 339 8-377 8-363 (814)
48 PRK10917 ATP-dependent DNA hel 100.0 1.9E-41 4.1E-46 345.6 38.9 315 13-375 252-588 (681)
49 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.2E-41 2.6E-46 341.5 34.9 325 12-373 4-388 (844)
50 COG0514 RecQ Superfamily II DN 100.0 9.3E-42 2E-46 328.6 29.3 328 12-383 5-344 (590)
51 TIGR00643 recG ATP-dependent D 100.0 1.2E-40 2.5E-45 337.8 38.6 318 11-375 224-565 (630)
52 COG1111 MPH1 ERCC4-like helica 100.0 1.4E-39 3.1E-44 299.8 34.8 322 22-377 14-482 (542)
53 PRK09751 putative ATP-dependen 100.0 1.1E-39 2.5E-44 345.2 35.5 312 43-375 1-384 (1490)
54 KOG0329|consensus 100.0 3.2E-41 6.9E-46 283.1 15.1 314 1-378 42-357 (387)
55 PHA02558 uvsW UvsW helicase; P 100.0 1.9E-39 4.2E-44 321.0 30.3 301 22-368 113-444 (501)
56 COG1204 Superfamily II helicas 100.0 2.2E-39 4.8E-44 327.8 28.6 334 7-376 15-408 (766)
57 COG1202 Superfamily II helicas 100.0 4.2E-39 9E-44 299.0 24.6 336 3-376 196-553 (830)
58 PHA02653 RNA helicase NPH-II; 100.0 3.5E-38 7.6E-43 315.0 32.7 318 26-384 167-522 (675)
59 PRK09401 reverse gyrase; Revie 100.0 4.7E-37 1E-41 324.6 33.5 301 15-362 72-430 (1176)
60 TIGR01587 cas3_core CRISPR-ass 100.0 1.6E-37 3.5E-42 297.6 26.3 300 40-377 1-337 (358)
61 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.1E-36 2.4E-41 311.4 33.4 307 26-378 5-338 (819)
62 PRK14701 reverse gyrase; Provi 100.0 1.8E-36 4E-41 326.4 33.4 323 11-377 67-457 (1638)
63 PRK11664 ATP-dependent RNA hel 100.0 3.5E-36 7.6E-41 308.5 32.1 307 26-378 8-341 (812)
64 COG1205 Distinct helicase fami 100.0 7.2E-36 1.6E-40 306.6 33.5 349 9-389 56-437 (851)
65 PRK13766 Hef nuclease; Provisi 100.0 5.2E-35 1.1E-39 306.5 37.9 322 21-376 13-479 (773)
66 PRK05580 primosome assembly pr 100.0 5.7E-35 1.2E-39 296.8 36.1 338 23-405 144-583 (679)
67 TIGR00603 rad25 DNA repair hel 100.0 7E-36 1.5E-40 297.1 27.8 326 23-399 255-633 (732)
68 PRK12898 secA preprotein trans 100.0 4.8E-35 1E-39 287.9 33.3 320 18-379 99-589 (656)
69 KOG0952|consensus 100.0 8.8E-36 1.9E-40 294.0 26.0 364 18-408 105-538 (1230)
70 KOG0352|consensus 100.0 3.4E-36 7.3E-41 270.3 20.6 334 10-384 5-370 (641)
71 TIGR03158 cas3_cyano CRISPR-as 100.0 1.1E-34 2.4E-39 274.8 31.3 290 27-361 1-357 (357)
72 KOG0354|consensus 100.0 8.8E-35 1.9E-39 283.6 27.2 320 23-377 62-530 (746)
73 TIGR03714 secA2 accessory Sec 100.0 3.3E-34 7.1E-39 285.2 30.8 319 19-379 67-540 (762)
74 PRK09200 preprotein translocas 100.0 4.9E-34 1.1E-38 286.7 32.3 320 19-379 75-544 (790)
75 TIGR00595 priA primosomal prot 100.0 1.8E-34 3.9E-39 283.1 28.5 317 42-403 1-413 (505)
76 KOG0351|consensus 100.0 2.5E-34 5.4E-39 293.0 26.9 329 12-383 252-599 (941)
77 TIGR00963 secA preprotein tran 100.0 3.5E-33 7.6E-38 276.1 32.8 320 19-380 53-521 (745)
78 TIGR01054 rgy reverse gyrase. 100.0 2.2E-33 4.8E-38 297.2 33.4 291 12-348 67-409 (1171)
79 COG1200 RecG RecG-like helicas 100.0 3.8E-32 8.3E-37 261.4 32.9 332 8-387 247-603 (677)
80 KOG0349|consensus 100.0 6.4E-34 1.4E-38 256.1 18.6 281 94-374 283-613 (725)
81 COG1061 SSL2 DNA or RNA helica 100.0 6.8E-33 1.5E-37 268.9 25.4 292 23-363 36-376 (442)
82 COG1197 Mfd Transcription-repa 100.0 3.4E-31 7.3E-36 268.6 32.5 321 8-376 579-913 (1139)
83 KOG0353|consensus 100.0 5E-32 1.1E-36 240.3 22.6 333 4-378 74-469 (695)
84 PRK04914 ATP-dependent helicas 100.0 8.1E-31 1.8E-35 269.9 32.8 335 23-392 152-619 (956)
85 COG1198 PriA Primosomal protei 100.0 2.2E-31 4.7E-36 264.5 27.3 342 22-403 197-635 (730)
86 KOG0951|consensus 100.0 1.3E-31 2.9E-36 267.8 25.4 333 19-377 305-703 (1674)
87 PRK09694 helicase Cas3; Provis 100.0 1.3E-30 2.8E-35 266.8 30.6 313 20-365 283-664 (878)
88 PRK11131 ATP-dependent RNA hel 100.0 2.5E-30 5.5E-35 269.9 31.7 301 25-378 76-413 (1294)
89 cd00268 DEADc DEAD-box helicas 100.0 2.6E-30 5.6E-35 227.7 25.3 202 3-231 1-202 (203)
90 COG4098 comFA Superfamily II D 100.0 4.6E-29 9.9E-34 219.0 30.0 312 23-386 97-426 (441)
91 KOG0947|consensus 100.0 8.3E-30 1.8E-34 249.3 25.7 312 18-376 293-723 (1248)
92 KOG0948|consensus 100.0 1.1E-30 2.3E-35 249.6 18.0 308 23-376 129-539 (1041)
93 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.1E-28 2.3E-33 258.7 29.9 301 29-378 73-406 (1283)
94 COG4581 Superfamily II RNA hel 100.0 7.2E-29 1.6E-33 251.7 27.3 317 16-375 113-536 (1041)
95 PRK13104 secA preprotein trans 100.0 3.3E-28 7E-33 244.3 27.7 319 19-379 79-590 (896)
96 PRK12904 preprotein translocas 100.0 2.6E-27 5.7E-32 237.6 31.4 319 19-379 78-576 (830)
97 PRK11448 hsdR type I restricti 100.0 1.2E-27 2.6E-32 252.0 28.0 307 23-365 413-802 (1123)
98 PRK12899 secA preprotein trans 100.0 6.6E-27 1.4E-31 234.4 29.4 148 4-185 65-228 (970)
99 PRK12906 secA preprotein trans 100.0 1.4E-26 2.9E-31 231.6 27.9 319 19-379 77-556 (796)
100 KOG0950|consensus 99.9 3.9E-26 8.5E-31 225.1 22.2 334 7-382 207-617 (1008)
101 PLN03142 Probable chromatin-re 99.9 2.4E-25 5.3E-30 230.4 28.1 312 23-371 169-592 (1033)
102 PF00270 DEAD: DEAD/DEAH box h 99.9 8.1E-26 1.8E-30 193.1 19.4 164 25-218 1-167 (169)
103 COG1203 CRISPR-associated heli 99.9 1.3E-25 2.7E-30 230.9 24.0 324 23-378 195-552 (733)
104 PRK13107 preprotein translocas 99.9 2.6E-25 5.7E-30 222.7 24.0 319 19-378 79-593 (908)
105 TIGR01407 dinG_rel DnaQ family 99.9 2.1E-23 4.5E-28 219.1 34.7 332 9-376 232-814 (850)
106 COG1643 HrpA HrpA-like helicas 99.9 2.6E-23 5.7E-28 210.2 26.9 310 25-378 52-389 (845)
107 COG0556 UvrB Helicase subunit 99.9 8.3E-23 1.8E-27 189.8 24.6 173 204-384 387-565 (663)
108 KOG0922|consensus 99.9 1.5E-22 3.2E-27 193.6 23.5 308 25-378 53-392 (674)
109 COG1110 Reverse gyrase [DNA re 99.9 6.2E-22 1.4E-26 196.7 27.8 286 14-347 73-416 (1187)
110 TIGR00348 hsdR type I site-spe 99.9 7.2E-22 1.6E-26 201.2 28.5 299 23-363 238-634 (667)
111 COG4096 HsdR Type I site-speci 99.9 2.5E-22 5.4E-27 196.6 22.8 294 23-363 165-525 (875)
112 TIGR00631 uvrb excinuclease AB 99.9 6.3E-21 1.4E-25 192.0 33.1 129 257-386 429-563 (655)
113 PRK07246 bifunctional ATP-depe 99.9 2.5E-21 5.4E-26 200.5 30.5 125 267-394 645-803 (820)
114 KOG1123|consensus 99.9 7.3E-23 1.6E-27 188.3 16.6 332 23-404 302-684 (776)
115 KOG0385|consensus 99.9 9.5E-22 2.1E-26 189.5 24.7 313 23-376 167-599 (971)
116 KOG0949|consensus 99.9 5E-22 1.1E-26 195.6 22.4 160 23-215 511-673 (1330)
117 PRK12326 preprotein translocas 99.9 4.1E-20 8.9E-25 181.5 29.1 320 19-379 75-550 (764)
118 PRK08074 bifunctional ATP-depe 99.9 5.8E-20 1.3E-24 193.8 30.0 117 268-384 751-903 (928)
119 KOG0920|consensus 99.9 1.8E-20 4E-25 188.9 24.8 315 24-377 174-545 (924)
120 PRK12900 secA preprotein trans 99.9 2.5E-20 5.4E-25 188.0 23.8 124 254-379 581-714 (1025)
121 COG4889 Predicted helicase [Ge 99.9 1.1E-21 2.4E-26 191.0 12.8 326 2-363 141-572 (1518)
122 TIGR03117 cas_csf4 CRISPR-asso 99.9 3E-19 6.4E-24 177.1 30.1 121 261-384 463-625 (636)
123 PRK05298 excinuclease ABC subu 99.9 4.7E-19 1E-23 180.0 32.0 134 258-392 434-582 (652)
124 KOG0387|consensus 99.9 1E-19 2.2E-24 176.4 25.2 317 23-376 205-658 (923)
125 PRK14873 primosome assembly pr 99.9 1E-20 2.2E-25 190.0 18.9 309 42-405 164-572 (665)
126 smart00487 DEXDc DEAD-like hel 99.9 9.6E-20 2.1E-24 159.8 21.8 187 18-234 3-191 (201)
127 KOG0923|consensus 99.8 3.7E-20 8.1E-25 175.8 17.1 308 24-375 266-605 (902)
128 PRK13103 secA preprotein trans 99.8 3.3E-19 7.1E-24 179.4 23.2 318 19-378 79-593 (913)
129 KOG0924|consensus 99.8 5.4E-19 1.2E-23 168.4 21.9 308 24-376 357-697 (1042)
130 KOG0953|consensus 99.8 2.4E-19 5.3E-24 167.4 17.9 270 39-375 192-476 (700)
131 KOG0926|consensus 99.8 4.4E-19 9.6E-24 171.7 18.9 308 29-376 262-704 (1172)
132 KOG0384|consensus 99.8 4.9E-19 1.1E-23 178.8 18.9 314 22-376 369-811 (1373)
133 PRK12903 secA preprotein trans 99.8 1.4E-17 3.1E-22 166.0 26.8 318 19-378 75-541 (925)
134 KOG0390|consensus 99.8 3.2E-17 7E-22 162.9 29.1 319 23-372 238-701 (776)
135 KOG4150|consensus 99.8 1.4E-18 2.9E-23 162.7 16.0 346 12-390 275-656 (1034)
136 PRK11747 dinG ATP-dependent DN 99.8 1.1E-16 2.3E-21 164.1 30.9 104 269-376 534-674 (697)
137 KOG0389|consensus 99.8 4.4E-18 9.5E-23 165.0 19.3 322 19-377 396-889 (941)
138 KOG0392|consensus 99.8 6.7E-18 1.5E-22 170.2 21.0 322 23-375 975-1453(1549)
139 CHL00122 secA preprotein trans 99.8 4.1E-17 8.9E-22 163.7 24.9 275 19-336 73-491 (870)
140 cd00079 HELICc Helicase superf 99.8 4.5E-18 9.8E-23 138.5 13.7 118 255-372 12-131 (131)
141 COG1199 DinG Rad3-related DNA 99.8 3.1E-16 6.7E-21 162.0 27.9 113 260-376 471-617 (654)
142 KOG1000|consensus 99.8 3E-17 6.5E-22 151.4 17.8 324 22-386 197-615 (689)
143 PF00271 Helicase_C: Helicase 99.8 3.5E-18 7.6E-23 125.2 8.6 78 287-364 1-78 (78)
144 cd00046 DEXDc DEAD-like helica 99.8 7.4E-17 1.6E-21 133.1 17.3 144 39-213 1-144 (144)
145 KOG0925|consensus 99.7 1.2E-16 2.7E-21 147.2 17.7 324 3-376 27-387 (699)
146 PRK12902 secA preprotein trans 99.7 8.6E-16 1.9E-20 154.0 25.1 130 19-185 82-218 (939)
147 KOG0951|consensus 99.7 4.5E-16 9.7E-21 157.7 22.0 319 24-395 1144-1510(1674)
148 PF04851 ResIII: Type III rest 99.7 3.7E-17 8.1E-22 141.5 11.4 153 23-214 3-183 (184)
149 TIGR02562 cas3_yersinia CRISPR 99.7 6.7E-15 1.5E-19 149.9 27.5 91 273-366 760-882 (1110)
150 TIGR00604 rad3 DNA repair heli 99.7 1.2E-14 2.7E-19 150.2 28.0 107 269-376 522-674 (705)
151 smart00490 HELICc helicase sup 99.6 2.2E-15 4.9E-20 111.6 8.4 81 284-364 2-82 (82)
152 PRK12901 secA preprotein trans 99.6 1.3E-13 2.9E-18 140.0 20.6 120 257-378 615-743 (1112)
153 KOG0386|consensus 99.6 2.9E-14 6.2E-19 142.2 15.2 118 256-373 711-833 (1157)
154 KOG4439|consensus 99.6 1.3E-13 2.8E-18 132.7 18.3 107 266-372 743-852 (901)
155 PF06862 DUF1253: Protein of u 99.6 6E-12 1.3E-16 119.3 28.1 297 88-384 28-423 (442)
156 KOG1002|consensus 99.5 3.1E-12 6.7E-17 118.7 23.9 111 267-377 636-750 (791)
157 KOG0388|consensus 99.5 2.5E-13 5.4E-18 130.7 16.6 117 258-374 1031-1152(1185)
158 KOG0391|consensus 99.5 4.1E-12 8.9E-17 128.3 22.9 122 256-377 1261-1388(1958)
159 PF02399 Herpes_ori_bp: Origin 99.5 1E-11 2.3E-16 123.8 22.4 288 41-376 52-388 (824)
160 PF07652 Flavi_DEAD: Flaviviru 99.4 4.5E-13 9.8E-18 105.8 7.0 136 37-217 3-140 (148)
161 COG0610 Type I site-specific r 99.4 2.6E-10 5.5E-15 120.6 25.5 312 39-391 274-667 (962)
162 COG0553 HepA Superfamily II DN 99.3 3E-10 6.6E-15 122.3 24.3 117 256-372 693-816 (866)
163 PF00176 SNF2_N: SNF2 family N 99.3 2.1E-11 4.6E-16 114.1 13.6 145 39-214 26-173 (299)
164 COG0653 SecA Preprotein transl 99.3 1.1E-10 2.4E-15 117.3 18.4 318 19-378 77-547 (822)
165 KOG1015|consensus 99.3 1.4E-10 3E-15 115.4 16.3 107 267-373 1140-1272(1567)
166 KOG2340|consensus 99.3 2.5E-10 5.4E-15 107.1 17.0 359 21-383 214-675 (698)
167 smart00489 DEXDc3 DEAD-like he 99.3 1.1E-10 2.5E-15 107.3 13.9 76 19-120 5-84 (289)
168 smart00488 DEXDc2 DEAD-like he 99.3 1.1E-10 2.5E-15 107.3 13.9 76 19-120 5-84 (289)
169 KOG0921|consensus 99.0 2.7E-09 5.8E-14 106.0 11.8 312 27-375 382-773 (1282)
170 PF07517 SecA_DEAD: SecA DEAD- 99.0 4.3E-08 9.4E-13 87.8 16.4 131 18-185 73-210 (266)
171 KOG1133|consensus 98.8 4.2E-06 9.2E-11 81.9 25.7 112 261-376 622-780 (821)
172 KOG0952|consensus 98.8 1.4E-09 3E-14 110.0 1.7 260 24-320 928-1206(1230)
173 PF13307 Helicase_C_2: Helicas 98.8 2E-08 4.2E-13 84.8 8.3 110 263-377 4-151 (167)
174 PRK15483 type III restriction- 98.8 1.1E-07 2.3E-12 98.4 14.2 74 319-392 501-584 (986)
175 KOG1016|consensus 98.6 7.5E-06 1.6E-10 81.0 21.5 135 269-403 719-876 (1387)
176 PF13872 AAA_34: P-loop contai 98.6 1.2E-06 2.6E-11 78.7 12.9 154 24-214 38-221 (303)
177 COG3587 Restriction endonuclea 98.6 5.3E-06 1.2E-10 83.1 18.3 71 318-388 482-565 (985)
178 PF13604 AAA_30: AAA domain; P 98.5 6E-07 1.3E-11 77.9 10.1 123 23-212 1-130 (196)
179 TIGR00596 rad1 DNA repair prot 98.5 9.5E-06 2.1E-10 84.2 19.9 67 148-214 7-73 (814)
180 PF13086 AAA_11: AAA domain; P 98.5 1.4E-06 3.1E-11 78.2 12.5 73 24-119 2-75 (236)
181 PF02562 PhoH: PhoH-like prote 98.5 5.2E-07 1.1E-11 77.6 8.2 146 21-212 2-155 (205)
182 KOG1131|consensus 98.4 0.0002 4.2E-09 68.3 24.3 108 269-376 530-681 (755)
183 KOG1802|consensus 98.3 4.4E-06 9.5E-11 81.3 9.9 84 15-133 402-485 (935)
184 KOG1001|consensus 98.2 8.2E-06 1.8E-10 82.7 10.5 102 270-371 540-643 (674)
185 KOG1803|consensus 98.2 5.9E-06 1.3E-10 80.0 8.8 65 23-118 185-250 (649)
186 smart00492 HELICc3 helicase su 98.2 1.3E-05 2.7E-10 65.2 9.1 96 281-376 3-138 (141)
187 PF09848 DUF2075: Uncharacteri 98.2 8.3E-06 1.8E-10 77.8 9.4 95 40-186 3-97 (352)
188 PRK10536 hypothetical protein; 98.1 5.3E-05 1.2E-09 67.2 12.7 47 19-65 55-101 (262)
189 TIGR00376 DNA helicase, putati 98.1 2.8E-05 6.1E-10 79.5 12.5 67 22-119 156-223 (637)
190 smart00491 HELICc2 helicase su 98.1 1.7E-05 3.6E-10 64.6 8.2 96 281-376 3-139 (142)
191 PF13245 AAA_19: Part of AAA d 98.1 2E-05 4.4E-10 56.4 7.6 52 39-117 11-62 (76)
192 PRK10875 recD exonuclease V su 98.0 0.00011 2.5E-09 74.3 14.8 142 25-212 154-301 (615)
193 KOG1132|consensus 98.0 5.7E-05 1.2E-09 76.3 11.4 106 270-376 562-722 (945)
194 TIGR01447 recD exodeoxyribonuc 98.0 0.00011 2.3E-09 74.3 13.6 143 25-212 147-295 (586)
195 TIGR01448 recD_rel helicase, p 98.0 0.00013 2.9E-09 75.8 14.7 128 19-212 320-452 (720)
196 PF12340 DUF3638: Protein of u 98.0 0.00017 3.7E-09 62.7 12.8 153 1-186 3-186 (229)
197 TIGR02768 TraA_Ti Ti-type conj 97.8 0.00036 7.9E-09 72.9 14.6 121 23-210 352-474 (744)
198 PRK13889 conjugal transfer rel 97.8 0.00044 9.5E-09 73.5 14.9 126 19-212 343-470 (988)
199 COG1875 NYN ribonuclease and A 97.8 0.00015 3.1E-09 66.5 9.1 146 19-210 224-385 (436)
200 COG3421 Uncharacterized protei 97.7 0.0003 6.4E-09 68.3 10.2 142 43-215 2-167 (812)
201 PRK13826 Dtr system oriT relax 97.7 0.0011 2.4E-08 70.9 15.3 138 7-212 366-505 (1102)
202 KOG1805|consensus 97.6 0.00017 3.7E-09 73.7 8.1 126 21-186 667-810 (1100)
203 PRK04296 thymidine kinase; Pro 97.6 0.00019 4E-09 62.0 7.0 23 40-62 4-26 (190)
204 PF00580 UvrD-helicase: UvrD/R 97.6 0.00026 5.6E-09 66.6 8.1 123 24-182 1-125 (315)
205 PRK08181 transposase; Validate 97.5 0.00076 1.7E-08 61.2 10.4 35 24-58 88-126 (269)
206 PRK06921 hypothetical protein; 97.5 0.001 2.2E-08 60.6 11.0 26 38-64 117-142 (266)
207 PF13401 AAA_22: AAA domain; P 97.5 0.00046 9.9E-09 55.6 7.8 37 174-213 89-125 (131)
208 PRK06526 transposase; Provisio 97.3 0.0013 2.8E-08 59.4 9.3 27 35-61 95-121 (254)
209 KOG0989|consensus 97.3 0.00054 1.2E-08 61.5 6.5 45 169-214 126-170 (346)
210 PRK12377 putative replication 97.3 0.0024 5.3E-08 57.2 10.5 25 39-64 102-126 (248)
211 cd00009 AAA The AAA+ (ATPases 97.3 0.003 6.5E-08 51.6 10.6 17 38-54 19-35 (151)
212 smart00382 AAA ATPases associa 97.3 0.0011 2.3E-08 53.9 7.5 19 38-56 2-20 (148)
213 TIGR02760 TraI_TIGR conjugativ 97.3 0.028 6E-07 65.0 20.7 236 23-319 429-686 (1960)
214 PRK12723 flagellar biosynthesi 97.2 0.0038 8.2E-08 59.7 10.9 56 155-214 241-298 (388)
215 PRK14974 cell division protein 97.2 0.0067 1.5E-07 56.9 12.3 53 171-223 221-274 (336)
216 PRK08116 hypothetical protein; 97.1 0.0049 1.1E-07 56.2 10.8 25 40-65 116-140 (268)
217 COG1419 FlhF Flagellar GTP-bin 97.1 0.011 2.3E-07 55.9 13.0 71 150-224 263-335 (407)
218 PF05970 PIF1: PIF1-like helic 97.1 0.00091 2E-08 64.1 6.1 31 24-54 2-38 (364)
219 PRK07952 DNA replication prote 97.1 0.0082 1.8E-07 53.7 11.2 44 170-213 160-205 (244)
220 PRK14722 flhF flagellar biosyn 97.0 0.0032 6.9E-08 59.7 8.9 46 170-215 213-259 (374)
221 PRK05707 DNA polymerase III su 97.0 0.005 1.1E-07 57.8 10.1 42 24-65 4-49 (328)
222 PF00308 Bac_DnaA: Bacterial d 97.0 0.0023 5E-08 56.5 6.9 47 170-216 95-143 (219)
223 PF13871 Helicase_C_4: Helicas 96.9 0.0028 6.1E-08 57.1 7.1 65 309-373 51-124 (278)
224 COG1484 DnaC DNA replication p 96.9 0.0049 1.1E-07 55.7 8.6 71 16-118 76-153 (254)
225 PRK11889 flhF flagellar biosyn 96.9 0.02 4.3E-07 54.4 12.3 71 153-224 302-374 (436)
226 PRK00149 dnaA chromosomal repl 96.9 0.008 1.7E-07 59.5 10.5 48 171-218 210-259 (450)
227 PRK06835 DNA replication prote 96.8 0.013 2.7E-07 55.1 11.0 26 38-64 183-208 (329)
228 PRK08727 hypothetical protein; 96.8 0.0065 1.4E-07 54.3 8.6 17 40-56 43-59 (233)
229 PRK06893 DNA replication initi 96.8 0.0062 1.3E-07 54.3 8.4 44 171-214 90-135 (229)
230 PRK10919 ATP-dependent DNA hel 96.8 0.0069 1.5E-07 63.0 10.0 70 23-121 2-71 (672)
231 PRK05642 DNA replication initi 96.8 0.0083 1.8E-07 53.7 9.3 45 170-214 95-140 (234)
232 PF00448 SRP54: SRP54-type pro 96.8 0.036 7.8E-07 47.9 12.8 47 171-217 82-129 (196)
233 COG1435 Tdk Thymidine kinase [ 96.8 0.005 1.1E-07 51.9 7.0 103 41-200 7-109 (201)
234 PRK14087 dnaA chromosomal repl 96.8 0.0077 1.7E-07 59.3 9.5 48 170-217 204-253 (450)
235 PRK11054 helD DNA helicase IV; 96.8 0.015 3.2E-07 60.3 11.9 75 18-121 191-265 (684)
236 PHA02544 44 clamp loader, smal 96.7 0.017 3.7E-07 54.4 11.4 40 172-211 100-139 (316)
237 cd01124 KaiC KaiC is a circadi 96.7 0.0063 1.4E-07 52.4 7.7 49 41-121 2-50 (187)
238 cd01120 RecA-like_NTPases RecA 96.7 0.044 9.6E-07 45.6 12.6 20 41-60 2-21 (165)
239 COG1200 RecG RecG-like helicas 96.7 0.0085 1.9E-07 59.9 9.0 91 256-346 298-393 (677)
240 KOG0298|consensus 96.7 0.0057 1.2E-07 64.8 8.0 159 38-215 374-552 (1394)
241 TIGR01075 uvrD DNA helicase II 96.7 0.0091 2E-07 62.8 9.8 72 22-122 3-74 (715)
242 TIGR00362 DnaA chromosomal rep 96.7 0.013 2.8E-07 57.2 10.2 24 40-64 138-161 (405)
243 PF13177 DNA_pol3_delta2: DNA 96.6 0.018 3.9E-07 48.2 9.5 50 171-221 101-150 (162)
244 PRK05703 flhF flagellar biosyn 96.6 0.034 7.4E-07 54.2 12.7 66 154-223 285-353 (424)
245 PRK12323 DNA polymerase III su 96.5 0.023 5.1E-07 57.3 10.9 44 170-214 122-165 (700)
246 PRK11773 uvrD DNA-dependent he 96.5 0.013 2.9E-07 61.6 9.8 72 22-122 8-79 (721)
247 PRK14086 dnaA chromosomal repl 96.5 0.015 3.3E-07 58.5 9.6 48 170-217 375-424 (617)
248 PRK08084 DNA replication initi 96.5 0.02 4.3E-07 51.3 9.5 18 39-56 46-63 (235)
249 COG2805 PilT Tfp pilus assembl 96.5 0.016 3.4E-07 52.3 8.3 25 41-66 128-152 (353)
250 TIGR03420 DnaA_homol_Hda DnaA 96.5 0.015 3.3E-07 51.7 8.6 20 38-57 38-57 (226)
251 TIGR01074 rep ATP-dependent DN 96.5 0.019 4E-07 60.1 10.4 69 24-121 2-70 (664)
252 PRK08769 DNA polymerase III su 96.4 0.033 7.1E-07 52.0 10.8 44 22-65 3-53 (319)
253 PRK14958 DNA polymerase III su 96.4 0.022 4.7E-07 57.0 10.1 39 171-210 118-156 (509)
254 PF14617 CMS1: U3-containing 9 96.4 0.0095 2.1E-07 53.1 6.7 86 95-182 124-211 (252)
255 PRK10917 ATP-dependent DNA hel 96.4 0.018 4E-07 60.0 9.9 103 245-347 284-393 (681)
256 PRK14088 dnaA chromosomal repl 96.4 0.032 7E-07 54.9 11.1 49 172-220 194-244 (440)
257 PRK13709 conjugal transfer nic 96.4 0.049 1.1E-06 61.6 13.5 64 23-113 967-1032(1747)
258 PTZ00112 origin recognition co 96.4 0.059 1.3E-06 56.1 12.8 23 41-64 784-806 (1164)
259 PTZ00293 thymidine kinase; Pro 96.3 0.036 7.7E-07 48.0 9.6 24 39-62 5-28 (211)
260 PF03354 Terminase_1: Phage Te 96.3 0.019 4.2E-07 57.2 9.2 148 26-209 1-159 (477)
261 PRK12422 chromosomal replicati 96.3 0.029 6.3E-07 55.1 10.1 48 171-218 201-250 (445)
262 PRK08903 DnaA regulatory inact 96.3 0.023 5E-07 50.6 8.8 43 171-214 89-132 (227)
263 PRK12402 replication factor C 96.3 0.033 7.1E-07 52.9 10.4 40 171-211 124-163 (337)
264 TIGR03499 FlhF flagellar biosy 96.3 0.06 1.3E-06 49.6 11.6 21 40-60 196-216 (282)
265 PRK14712 conjugal transfer nic 96.3 0.044 9.5E-07 61.3 12.3 32 23-54 835-868 (1623)
266 PRK14956 DNA polymerase III su 96.3 0.012 2.6E-07 57.5 7.1 22 41-62 43-64 (484)
267 PRK00411 cdc6 cell division co 96.2 0.035 7.6E-07 54.1 10.4 24 39-63 56-79 (394)
268 COG2256 MGS1 ATPase related to 96.2 0.028 6.1E-07 52.7 8.9 19 39-57 49-67 (436)
269 PRK07003 DNA polymerase III su 96.2 0.036 7.7E-07 57.0 10.3 41 171-212 118-158 (830)
270 PLN03025 replication factor C 96.2 0.065 1.4E-06 50.5 11.6 39 172-211 99-137 (319)
271 PF00004 AAA: ATPase family as 96.2 0.047 1E-06 43.7 9.4 16 173-188 59-74 (132)
272 TIGR02785 addA_Gpos recombinat 96.2 0.029 6.2E-07 62.5 10.5 123 24-183 2-126 (1232)
273 cd01122 GP4d_helicase GP4d_hel 96.2 0.029 6.3E-07 51.5 9.0 52 11-62 3-54 (271)
274 PRK14964 DNA polymerase III su 96.2 0.063 1.4E-06 53.0 11.7 40 170-210 114-153 (491)
275 COG0593 DnaA ATPase involved i 96.1 0.028 6.1E-07 53.7 8.7 47 172-218 175-223 (408)
276 PHA02533 17 large terminase pr 96.1 0.041 8.8E-07 55.2 10.3 124 23-186 59-183 (534)
277 PRK14960 DNA polymerase III su 96.1 0.059 1.3E-06 54.7 11.3 39 171-210 117-155 (702)
278 PRK13833 conjugal transfer pro 96.1 0.023 5E-07 53.0 7.9 47 15-64 122-169 (323)
279 PRK09183 transposase/IS protei 96.1 0.049 1.1E-06 49.5 9.9 25 35-59 99-123 (259)
280 TIGR00643 recG ATP-dependent D 96.1 0.06 1.3E-06 55.7 11.5 102 246-347 259-367 (630)
281 PRK06731 flhF flagellar biosyn 96.0 0.14 3.1E-06 46.5 12.5 54 171-224 153-208 (270)
282 PRK14952 DNA polymerase III su 96.0 0.04 8.6E-07 55.8 9.7 40 170-210 116-155 (584)
283 TIGR01073 pcrA ATP-dependent D 96.0 0.037 8.1E-07 58.4 9.9 72 22-122 3-74 (726)
284 PRK05580 primosome assembly pr 96.0 0.066 1.4E-06 55.8 11.3 78 268-346 189-267 (679)
285 PRK07764 DNA polymerase III su 96.0 0.047 1E-06 57.6 10.2 39 171-210 119-157 (824)
286 PF05876 Terminase_GpA: Phage 95.9 0.023 4.9E-07 57.5 7.5 128 23-186 16-148 (557)
287 TIGR02881 spore_V_K stage V sp 95.9 0.039 8.5E-07 50.3 8.4 20 39-58 43-62 (261)
288 PRK06964 DNA polymerase III su 95.9 0.069 1.5E-06 50.3 10.1 42 24-65 2-48 (342)
289 PHA03333 putative ATPase subun 95.9 0.14 3.1E-06 51.8 12.6 58 35-122 184-241 (752)
290 PRK14723 flhF flagellar biosyn 95.9 0.13 2.9E-06 53.3 12.6 68 153-224 248-317 (767)
291 PRK08699 DNA polymerase III su 95.8 0.088 1.9E-06 49.5 10.5 41 25-65 3-48 (325)
292 TIGR02782 TrbB_P P-type conjug 95.8 0.047 1E-06 50.7 8.5 48 14-64 109-157 (299)
293 PRK08939 primosomal protein Dn 95.8 0.057 1.2E-06 50.2 9.0 46 170-215 215-263 (306)
294 COG3973 Superfamily I DNA and 95.8 0.064 1.4E-06 52.9 9.5 86 11-121 193-284 (747)
295 PRK12727 flagellar biosynthesi 95.8 0.24 5.2E-06 49.1 13.5 23 37-59 349-371 (559)
296 PRK09111 DNA polymerase III su 95.7 0.098 2.1E-06 53.3 11.2 40 170-210 130-169 (598)
297 PRK06871 DNA polymerase III su 95.7 0.046 9.9E-07 51.1 8.2 42 24-65 3-51 (325)
298 TIGR00595 priA primosomal prot 95.7 0.052 1.1E-06 54.4 9.1 78 268-346 24-102 (505)
299 PRK13894 conjugal transfer ATP 95.7 0.039 8.5E-07 51.6 7.7 47 14-63 125-172 (319)
300 KOG0991|consensus 95.7 0.023 5E-07 49.2 5.5 45 169-214 110-154 (333)
301 PF05496 RuvB_N: Holliday junc 95.7 0.023 4.9E-07 49.5 5.5 19 40-58 52-70 (233)
302 TIGR02760 TraI_TIGR conjugativ 95.7 0.049 1.1E-06 63.1 9.7 62 23-114 1019-1085(1960)
303 PRK14961 DNA polymerase III su 95.7 0.086 1.9E-06 50.6 10.1 40 170-210 117-156 (363)
304 PRK00771 signal recognition pa 95.7 0.12 2.5E-06 50.6 11.0 50 173-222 176-226 (437)
305 PRK11331 5-methylcytosine-spec 95.7 0.11 2.3E-06 50.5 10.4 33 24-56 180-212 (459)
306 PRK07993 DNA polymerase III su 95.6 0.04 8.6E-07 52.0 7.4 42 24-65 3-51 (334)
307 TIGR00678 holB DNA polymerase 95.6 0.19 4E-06 43.3 11.0 40 170-210 94-133 (188)
308 PRK14951 DNA polymerase III su 95.6 0.11 2.4E-06 52.9 10.9 39 171-210 123-161 (618)
309 PRK14873 primosome assembly pr 95.6 0.092 2E-06 54.2 10.4 92 254-346 171-266 (665)
310 PRK14963 DNA polymerase III su 95.6 0.066 1.4E-06 53.5 9.1 22 41-62 39-60 (504)
311 PRK14949 DNA polymerase III su 95.6 0.034 7.3E-07 58.2 7.1 38 171-209 118-155 (944)
312 PRK13341 recombination factor 95.5 0.12 2.5E-06 54.0 11.0 39 172-215 109-147 (725)
313 PRK09112 DNA polymerase III su 95.5 0.18 3.9E-06 47.9 11.4 43 170-213 139-181 (351)
314 PRK08691 DNA polymerase III su 95.5 0.13 2.9E-06 52.6 10.9 40 170-210 117-156 (709)
315 TIGR00580 mfd transcription-re 95.5 0.064 1.4E-06 57.5 9.1 102 246-347 475-583 (926)
316 TIGR03015 pepcterm_ATPase puta 95.4 0.17 3.7E-06 46.3 10.9 34 23-56 23-61 (269)
317 cd01121 Sms Sms (bacterial rad 95.4 0.12 2.5E-06 49.6 9.9 89 39-185 83-171 (372)
318 PRK08533 flagellar accessory p 95.4 0.21 4.7E-06 44.4 11.1 26 37-62 23-48 (230)
319 PF01695 IstB_IS21: IstB-like 95.4 0.035 7.5E-07 47.3 5.7 26 37-62 46-71 (178)
320 PRK11823 DNA repair protein Ra 95.4 0.11 2.3E-06 51.3 9.8 90 39-186 81-170 (446)
321 PHA03368 DNA packaging termina 95.4 0.13 2.9E-06 51.8 10.3 136 37-214 253-391 (738)
322 PF13173 AAA_14: AAA domain 95.4 0.27 5.8E-06 39.2 10.5 38 172-213 61-98 (128)
323 PF06745 KaiC: KaiC; InterPro 95.4 0.022 4.9E-07 50.7 4.7 28 38-65 19-46 (226)
324 PRK04195 replication factor C 95.3 0.11 2.4E-06 51.9 9.9 19 39-57 40-58 (482)
325 PRK07471 DNA polymerase III su 95.3 0.22 4.8E-06 47.6 11.5 43 170-213 139-181 (365)
326 PRK14962 DNA polymerase III su 95.3 0.085 1.8E-06 52.2 8.8 21 41-61 39-59 (472)
327 TIGR03877 thermo_KaiC_1 KaiC d 95.3 0.084 1.8E-06 47.3 8.2 53 38-122 21-73 (237)
328 PRK07940 DNA polymerase III su 95.3 0.1 2.3E-06 50.3 9.2 42 171-213 116-157 (394)
329 PRK14965 DNA polymerase III su 95.3 0.18 3.9E-06 51.4 11.3 40 170-210 117-156 (576)
330 PRK14957 DNA polymerase III su 95.3 0.16 3.5E-06 51.1 10.6 40 170-210 117-156 (546)
331 PRK06090 DNA polymerase III su 95.3 0.15 3.3E-06 47.5 9.8 43 23-65 3-52 (319)
332 COG1197 Mfd Transcription-repa 95.2 0.098 2.1E-06 55.9 9.3 83 263-345 637-724 (1139)
333 CHL00181 cbbX CbbX; Provisiona 95.2 0.14 3.1E-06 47.2 9.6 21 39-59 60-80 (287)
334 KOG2028|consensus 95.2 0.11 2.5E-06 48.1 8.6 16 40-55 164-179 (554)
335 KOG0733|consensus 95.2 0.13 2.8E-06 51.1 9.3 52 1-55 508-562 (802)
336 PRK13342 recombination factor 95.2 0.22 4.7E-06 48.8 11.3 18 40-57 38-55 (413)
337 COG4962 CpaF Flp pilus assembl 95.2 0.041 8.9E-07 50.8 5.7 37 17-53 151-188 (355)
338 PRK06645 DNA polymerase III su 95.2 0.14 3.1E-06 51.0 9.9 25 40-64 45-69 (507)
339 PF05621 TniB: Bacterial TniB 95.2 0.12 2.5E-06 47.3 8.4 16 39-54 62-77 (302)
340 PRK12726 flagellar biosynthesi 95.2 0.14 3E-06 48.6 9.2 60 154-214 268-328 (407)
341 PRK14969 DNA polymerase III su 95.1 0.1 2.2E-06 52.6 8.8 40 170-210 117-156 (527)
342 PRK07994 DNA polymerase III su 95.1 0.14 3E-06 52.4 9.7 39 171-210 118-156 (647)
343 COG1198 PriA Primosomal protei 95.1 0.14 3E-06 52.9 9.7 99 245-344 219-320 (730)
344 PRK08451 DNA polymerase III su 95.1 0.079 1.7E-06 52.9 7.8 41 170-211 115-155 (535)
345 PRK13851 type IV secretion sys 95.1 0.042 9.2E-07 51.8 5.6 28 34-62 158-185 (344)
346 PRK05563 DNA polymerase III su 95.0 0.14 2.9E-06 52.1 9.5 23 41-63 41-63 (559)
347 TIGR02525 plasmid_TraJ plasmid 95.0 0.064 1.4E-06 51.2 6.5 27 37-64 148-174 (372)
348 PF05127 Helicase_RecD: Helica 94.9 0.024 5.1E-07 47.7 3.2 124 42-214 1-124 (177)
349 PRK05986 cob(I)alamin adenolsy 94.9 0.11 2.3E-06 44.3 7.2 53 171-223 114-168 (191)
350 PRK14959 DNA polymerase III su 94.9 0.25 5.5E-06 50.2 10.9 25 40-64 40-64 (624)
351 cd00984 DnaB_C DnaB helicase C 94.9 0.19 4.1E-06 45.2 9.4 29 36-64 11-39 (242)
352 KOG1513|consensus 94.9 0.033 7.1E-07 56.4 4.5 158 22-213 263-454 (1300)
353 COG4626 Phage terminase-like p 94.9 0.19 4.1E-06 49.5 9.7 150 23-212 61-224 (546)
354 cd00561 CobA_CobO_BtuR ATP:cor 94.9 0.53 1.1E-05 39.0 11.0 53 170-222 93-147 (159)
355 PRK05973 replicative DNA helic 94.9 0.099 2.2E-06 46.5 7.0 55 35-121 61-115 (237)
356 PRK06067 flagellar accessory p 94.8 0.44 9.5E-06 42.6 11.3 26 39-64 26-51 (234)
357 PRK05896 DNA polymerase III su 94.8 0.096 2.1E-06 52.9 7.5 39 171-210 118-156 (605)
358 COG1110 Reverse gyrase [DNA re 94.8 0.11 2.4E-06 54.5 7.9 88 258-345 114-211 (1187)
359 COG0470 HolB ATPase involved i 94.7 0.16 3.5E-06 47.9 8.7 40 171-211 108-147 (325)
360 PRK13900 type IV secretion sys 94.7 0.11 2.5E-06 48.9 7.5 28 35-63 157-184 (332)
361 PRK00440 rfc replication facto 94.7 0.51 1.1E-05 44.4 12.0 39 172-211 102-140 (319)
362 TIGR01547 phage_term_2 phage t 94.7 0.12 2.7E-06 50.2 8.0 137 40-215 3-142 (396)
363 TIGR02880 cbbX_cfxQ probable R 94.7 0.21 4.5E-06 46.1 9.0 19 39-57 59-77 (284)
364 PRK06995 flhF flagellar biosyn 94.7 0.27 5.7E-06 48.6 10.1 23 39-61 257-279 (484)
365 PRK14721 flhF flagellar biosyn 94.7 0.37 7.9E-06 46.8 10.9 53 170-222 267-321 (420)
366 PRK14950 DNA polymerase III su 94.6 0.3 6.6E-06 50.1 10.9 22 41-62 41-62 (585)
367 TIGR02928 orc1/cdc6 family rep 94.6 0.37 8.1E-06 46.3 11.1 24 39-63 41-64 (365)
368 PRK07133 DNA polymerase III su 94.6 0.23 5E-06 51.3 9.8 40 170-210 116-155 (725)
369 PRK06620 hypothetical protein; 94.6 0.085 1.8E-06 46.4 5.9 17 39-55 45-61 (214)
370 TIGR03881 KaiC_arch_4 KaiC dom 94.5 0.28 6.1E-06 43.7 9.3 27 37-63 19-45 (229)
371 COG1474 CDC6 Cdc6-related prot 94.5 0.78 1.7E-05 43.9 12.6 28 171-199 122-149 (366)
372 PRK14948 DNA polymerase III su 94.5 0.24 5.2E-06 50.9 9.7 25 40-64 40-64 (620)
373 PRK10689 transcription-repair 94.3 0.25 5.5E-06 54.4 10.1 101 246-346 624-731 (1147)
374 cd03115 SRP The signal recogni 94.3 1.6 3.6E-05 36.7 13.2 20 41-60 3-22 (173)
375 PRK14955 DNA polymerase III su 94.3 0.32 7E-06 47.3 9.8 24 41-64 41-64 (397)
376 TIGR01243 CDC48 AAA family ATP 94.2 0.31 6.6E-06 51.6 10.2 18 37-54 211-228 (733)
377 PRK12724 flagellar biosynthesi 94.2 0.88 1.9E-05 44.0 12.2 52 171-222 298-354 (432)
378 TIGR00708 cobA cob(I)alamin ad 94.2 0.5 1.1E-05 39.7 9.3 52 171-222 96-149 (173)
379 COG2804 PulE Type II secretory 94.2 0.078 1.7E-06 51.6 5.2 40 25-65 243-284 (500)
380 PRK14953 DNA polymerase III su 94.1 0.43 9.3E-06 47.6 10.4 22 41-62 41-62 (486)
381 TIGR00064 ftsY signal recognit 94.1 1.5 3.3E-05 40.0 13.3 46 171-216 153-205 (272)
382 PF05729 NACHT: NACHT domain 94.1 0.54 1.2E-05 39.1 9.8 24 41-65 3-26 (166)
383 TIGR01425 SRP54_euk signal rec 94.1 1.4 3E-05 42.9 13.5 54 171-224 181-235 (429)
384 KOG0739|consensus 94.1 0.77 1.7E-05 41.6 10.6 53 33-120 156-213 (439)
385 TIGR02524 dot_icm_DotB Dot/Icm 94.0 0.11 2.5E-06 49.4 6.0 27 37-64 133-159 (358)
386 PRK08058 DNA polymerase III su 94.0 0.54 1.2E-05 44.5 10.4 42 170-212 108-149 (329)
387 PRK06904 replicative DNA helic 94.0 1 2.2E-05 44.8 12.7 26 35-60 218-243 (472)
388 PF03796 DnaB_C: DnaB-like hel 94.0 0.32 7E-06 44.2 8.7 28 38-65 19-46 (259)
389 PF01443 Viral_helicase1: Vira 93.9 0.035 7.6E-07 49.6 2.2 14 41-54 1-14 (234)
390 PRK07399 DNA polymerase III su 93.9 0.96 2.1E-05 42.3 11.8 60 151-213 104-163 (314)
391 PF02572 CobA_CobO_BtuR: ATP:c 93.9 1.2 2.6E-05 37.4 11.1 141 41-222 6-148 (172)
392 TIGR03600 phage_DnaB phage rep 93.8 0.56 1.2E-05 46.1 10.7 28 35-62 191-218 (421)
393 KOG0738|consensus 93.8 0.5 1.1E-05 44.4 9.4 54 2-55 184-262 (491)
394 COG2909 MalT ATP-dependent tra 93.8 0.36 7.8E-06 50.0 9.2 43 172-214 129-171 (894)
395 KOG1132|consensus 93.8 2.3 4.9E-05 44.4 14.7 99 23-121 21-134 (945)
396 TIGR00416 sms DNA repair prote 93.8 0.43 9.3E-06 47.1 9.6 89 39-185 95-183 (454)
397 PHA00729 NTP-binding motif con 93.8 0.64 1.4E-05 40.9 9.6 18 40-57 19-36 (226)
398 TIGR01243 CDC48 AAA family ATP 93.8 0.44 9.6E-06 50.4 10.4 17 39-55 488-504 (733)
399 PRK14954 DNA polymerase III su 93.7 0.44 9.6E-06 48.8 9.8 40 170-210 125-164 (620)
400 PF06733 DEAD_2: DEAD_2; Inte 93.7 0.045 9.7E-07 46.5 2.3 46 142-187 113-160 (174)
401 PF03237 Terminase_6: Terminas 93.5 1.5 3.3E-05 42.0 13.1 57 171-228 96-154 (384)
402 TIGR02397 dnaX_nterm DNA polym 93.5 0.73 1.6E-05 44.1 10.6 20 40-59 38-57 (355)
403 COG0552 FtsY Signal recognitio 93.4 1.8 4E-05 40.1 12.1 52 171-222 220-278 (340)
404 COG1219 ClpX ATP-dependent pro 93.4 0.064 1.4E-06 48.8 2.8 17 39-55 98-114 (408)
405 TIGR02688 conserved hypothetic 93.3 0.49 1.1E-05 45.5 8.7 29 33-61 204-232 (449)
406 PF01637 Arch_ATPase: Archaeal 93.3 0.21 4.7E-06 44.3 6.2 55 155-213 105-165 (234)
407 PRK13764 ATPase; Provisional 93.3 0.18 3.9E-06 51.1 6.1 27 37-64 256-282 (602)
408 cd01129 PulE-GspE PulE/GspE Th 93.2 0.24 5.1E-06 45.2 6.4 45 15-63 58-104 (264)
409 KOG0298|consensus 93.2 0.18 3.8E-06 54.1 6.1 102 263-369 1215-1317(1394)
410 PHA00350 putative assembly pro 93.2 0.59 1.3E-05 44.9 9.1 24 41-64 4-28 (399)
411 cd01130 VirB11-like_ATPase Typ 93.2 0.29 6.4E-06 42.0 6.6 37 16-54 4-41 (186)
412 KOG0732|consensus 93.1 0.24 5.1E-06 52.8 6.8 53 2-55 263-316 (1080)
413 TIGR00614 recQ_fam ATP-depende 93.1 1.7 3.6E-05 43.5 12.7 79 269-347 51-137 (470)
414 COG1444 Predicted P-loop ATPas 93.0 1.2 2.6E-05 46.2 11.5 148 15-214 206-357 (758)
415 COG2109 BtuR ATP:corrinoid ade 93.0 0.91 2E-05 38.3 8.8 53 171-223 121-175 (198)
416 PRK06305 DNA polymerase III su 93.0 0.6 1.3E-05 46.1 9.2 39 171-210 120-158 (451)
417 PRK09354 recA recombinase A; P 93.0 0.23 5E-06 46.7 6.0 33 31-63 47-85 (349)
418 KOG0741|consensus 92.9 1.6 3.4E-05 42.9 11.5 50 5-54 493-554 (744)
419 PRK06647 DNA polymerase III su 92.9 0.67 1.5E-05 47.1 9.6 23 41-63 41-63 (563)
420 PRK14971 DNA polymerase III su 92.9 1.1 2.4E-05 46.1 11.3 40 170-210 119-158 (614)
421 TIGR02533 type_II_gspE general 92.9 0.26 5.6E-06 49.1 6.5 45 15-63 220-266 (486)
422 PRK11034 clpA ATP-dependent Cl 92.8 0.63 1.4E-05 49.0 9.5 17 39-55 208-224 (758)
423 cd00268 DEADc DEAD-box helicas 92.7 2.1 4.5E-05 37.1 11.5 75 268-346 68-152 (203)
424 PHA03372 DNA packaging termina 92.7 2.8 6.2E-05 42.2 13.1 144 19-213 187-337 (668)
425 PRK04841 transcriptional regul 92.7 1.4 3E-05 48.1 12.6 43 172-214 121-163 (903)
426 TIGR00665 DnaB replicative DNA 92.7 1.1 2.4E-05 44.2 10.7 25 38-62 195-219 (434)
427 PRK00080 ruvB Holliday junctio 92.7 0.32 7E-06 46.0 6.7 18 39-56 52-69 (328)
428 PRK08506 replicative DNA helic 92.6 0.95 2.1E-05 45.1 10.1 25 38-62 192-216 (472)
429 PF00437 T2SE: Type II/IV secr 92.6 0.19 4.1E-06 46.1 4.9 29 36-65 125-153 (270)
430 PRK10436 hypothetical protein; 92.5 0.27 5.8E-06 48.5 6.0 45 15-63 196-242 (462)
431 PF12846 AAA_10: AAA-like doma 92.5 0.18 3.9E-06 46.9 4.8 24 39-62 2-25 (304)
432 KOG0701|consensus 92.3 0.087 1.9E-06 58.4 2.6 93 271-363 294-398 (1606)
433 KOG0730|consensus 92.3 0.91 2E-05 45.7 9.3 52 1-55 431-485 (693)
434 PRK10416 signal recognition pa 92.3 7.4 0.00016 36.5 15.1 45 171-215 195-246 (318)
435 PRK14701 reverse gyrase; Provi 92.1 0.9 2E-05 51.9 10.1 61 268-328 121-187 (1638)
436 PRK08840 replicative DNA helic 92.0 2.3 5E-05 42.2 11.9 31 31-61 210-240 (464)
437 COG3972 Superfamily I DNA and 92.0 0.18 3.9E-06 48.7 3.9 137 21-187 160-310 (660)
438 PF03969 AFG1_ATPase: AFG1-lik 91.9 3.7 8.1E-05 39.2 12.7 45 171-216 126-171 (362)
439 TIGR03878 thermo_KaiC_2 KaiC d 91.9 0.44 9.6E-06 43.3 6.3 27 38-64 36-62 (259)
440 PRK09087 hypothetical protein; 91.8 0.55 1.2E-05 41.7 6.6 16 40-55 46-61 (226)
441 PF02456 Adeno_IVa2: Adenoviru 91.7 0.26 5.6E-06 44.8 4.4 41 41-110 90-130 (369)
442 COG5008 PilU Tfp pilus assembl 91.7 0.62 1.4E-05 41.5 6.6 15 40-54 129-143 (375)
443 TIGR02639 ClpA ATP-dependent C 91.7 1.8 3.8E-05 45.9 11.4 17 39-55 204-220 (731)
444 cd00544 CobU Adenosylcobinamid 91.7 1.5 3.2E-05 36.9 8.8 46 41-120 2-47 (169)
445 TIGR03819 heli_sec_ATPase heli 91.6 0.54 1.2E-05 44.5 6.8 47 13-62 154-201 (340)
446 PRK04328 hypothetical protein; 91.6 0.36 7.9E-06 43.6 5.4 28 38-65 23-50 (249)
447 PRK05917 DNA polymerase III su 91.5 2.6 5.7E-05 38.7 10.8 45 171-216 94-138 (290)
448 cd01126 TraG_VirD4 The TraG/Tr 91.5 0.15 3.2E-06 49.5 3.0 48 40-120 1-48 (384)
449 TIGR02788 VirB11 P-type DNA tr 91.5 0.41 8.8E-06 44.8 5.8 26 35-61 141-166 (308)
450 COG2255 RuvB Holliday junction 91.4 0.56 1.2E-05 42.3 6.0 21 39-59 53-73 (332)
451 TIGR00635 ruvB Holliday juncti 91.3 0.54 1.2E-05 43.9 6.5 18 39-56 31-48 (305)
452 TIGR03346 chaperone_ClpB ATP-d 91.3 1.9 4.1E-05 46.5 11.3 18 39-56 195-212 (852)
453 PRK07004 replicative DNA helic 91.1 0.72 1.6E-05 45.7 7.4 25 37-61 212-236 (460)
454 TIGR00767 rho transcription te 91.1 1.7 3.7E-05 41.8 9.4 26 37-63 167-192 (415)
455 TIGR01389 recQ ATP-dependent D 91.0 6.6 0.00014 40.6 14.6 59 269-327 53-111 (591)
456 PRK10867 signal recognition pa 90.9 4.2 9E-05 39.9 12.2 21 41-61 103-123 (433)
457 PRK07414 cob(I)yrinic acid a,c 90.9 3.6 7.8E-05 34.7 10.2 52 171-222 114-167 (178)
458 TIGR02538 type_IV_pilB type IV 90.9 0.31 6.7E-06 49.7 4.7 45 15-63 294-340 (564)
459 PF02534 T4SS-DNA_transf: Type 90.8 0.27 5.8E-06 49.1 4.2 49 40-121 46-94 (469)
460 KOG0742|consensus 90.8 0.58 1.3E-05 44.3 5.8 16 39-54 385-400 (630)
461 TIGR02640 gas_vesic_GvpN gas v 90.7 0.33 7.1E-06 44.3 4.3 28 30-57 13-40 (262)
462 PRK05564 DNA polymerase III su 90.7 2.7 5.9E-05 39.4 10.6 40 170-210 91-130 (313)
463 COG1132 MdlB ABC-type multidru 90.7 0.67 1.5E-05 47.6 7.0 44 170-213 481-524 (567)
464 PRK08006 replicative DNA helic 90.7 4.2 9.1E-05 40.5 12.2 25 37-61 223-247 (471)
465 COG0630 VirB11 Type IV secreto 90.7 0.52 1.1E-05 44.0 5.6 40 23-63 127-167 (312)
466 KOG1513|consensus 90.6 0.26 5.6E-06 50.3 3.6 61 312-372 850-919 (1300)
467 KOG1807|consensus 90.6 0.52 1.1E-05 48.0 5.7 74 20-118 375-448 (1025)
468 PRK05748 replicative DNA helic 90.6 1.4 3.1E-05 43.7 8.9 25 37-61 202-226 (448)
469 COG0513 SrmB Superfamily II DN 90.4 1.1 2.4E-05 45.2 8.1 70 272-345 102-182 (513)
470 COG0467 RAD55 RecA-superfamily 90.4 0.6 1.3E-05 42.5 5.7 54 37-122 22-75 (260)
471 cd01131 PilT Pilus retraction 90.4 0.45 9.7E-06 41.3 4.7 22 41-63 4-25 (198)
472 TIGR03880 KaiC_arch_3 KaiC dom 90.3 0.67 1.4E-05 41.1 5.8 52 38-121 16-67 (224)
473 TIGR00959 ffh signal recogniti 90.0 11 0.00024 36.9 14.2 21 41-61 102-122 (428)
474 CHL00095 clpC Clp protease ATP 90.0 2.6 5.6E-05 45.3 10.8 20 39-58 201-220 (821)
475 cd01393 recA_like RecA is a b 89.9 1.2 2.5E-05 39.5 7.1 24 39-62 20-43 (226)
476 PRK13897 type IV secretion sys 89.6 0.28 6.1E-06 50.0 3.1 50 39-121 159-208 (606)
477 PHA00012 I assembly protein 89.5 8.3 0.00018 35.9 11.9 25 41-65 4-28 (361)
478 TIGR01420 pilT_fam pilus retra 89.4 0.64 1.4E-05 44.2 5.2 25 38-63 122-146 (343)
479 PRK14970 DNA polymerase III su 89.4 4.2 9.2E-05 39.1 11.0 19 40-58 41-59 (367)
480 PF13555 AAA_29: P-loop contai 89.3 0.36 7.7E-06 32.8 2.5 16 39-54 24-39 (62)
481 KOG0744|consensus 89.3 0.66 1.4E-05 42.5 4.8 14 40-53 179-192 (423)
482 TIGR02868 CydC thiol reductant 89.3 0.69 1.5E-05 47.0 5.7 41 170-210 486-526 (529)
483 TIGR03345 VI_ClpV1 type VI sec 89.3 4.2 9E-05 43.8 11.6 17 39-55 209-225 (852)
484 PRK08760 replicative DNA helic 89.2 3.2 7E-05 41.4 10.2 24 38-61 229-252 (476)
485 TIGR02237 recomb_radB DNA repa 89.2 0.59 1.3E-05 40.9 4.6 24 39-62 13-36 (209)
486 TIGR02858 spore_III_AA stage I 89.2 6.6 0.00014 35.9 11.4 24 30-53 100-126 (270)
487 KOG0330|consensus 89.2 2.6 5.6E-05 39.7 8.6 84 256-343 116-210 (476)
488 PRK10865 protein disaggregatio 88.9 2.9 6.4E-05 45.0 10.3 17 39-55 200-216 (857)
489 PF08423 Rad51: Rad51; InterP 88.9 0.88 1.9E-05 41.2 5.5 33 30-62 25-62 (256)
490 TIGR02655 circ_KaiC circadian 88.9 0.73 1.6E-05 46.1 5.5 60 30-121 250-314 (484)
491 cd03239 ABC_SMC_head The struc 88.9 1.3 2.7E-05 37.7 6.2 42 171-212 115-157 (178)
492 COG0210 UvrD Superfamily I DNA 88.8 1.1 2.5E-05 46.8 7.1 71 23-122 2-72 (655)
493 PF01935 DUF87: Domain of unkn 88.8 0.64 1.4E-05 41.3 4.6 25 39-64 24-48 (229)
494 COG3267 ExeA Type II secretory 88.7 2.5 5.3E-05 37.7 7.8 27 35-62 47-74 (269)
495 TIGR03743 SXT_TraD conjugative 88.6 1.1 2.3E-05 46.4 6.5 53 39-122 177-231 (634)
496 COG1066 Sms Predicted ATP-depe 88.6 2.2 4.8E-05 40.7 7.9 94 32-187 82-183 (456)
497 COG0464 SpoVK ATPases of the A 88.5 4.4 9.5E-05 40.8 10.8 22 39-60 277-298 (494)
498 KOG0058|consensus 88.5 0.91 2E-05 46.3 5.7 41 170-211 620-660 (716)
499 PF13481 AAA_25: AAA domain; P 88.3 1.4 3.1E-05 37.8 6.3 63 37-121 31-93 (193)
500 TIGR02655 circ_KaiC circadian 88.3 0.86 1.9E-05 45.6 5.5 54 38-122 21-74 (484)
No 1
>KOG0330|consensus
Probab=100.00 E-value=9.7e-66 Score=455.08 Aligned_cols=369 Identities=40% Similarity=0.646 Sum_probs=344.9
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQN 80 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 80 (453)
.+|.+||+.+.+.++++.+|+..|+++|.+++|.++.|++++..|.||||||.+|++|+++.+..
T Consensus 61 ~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~--------------- 125 (476)
T KOG0330|consen 61 KSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQ--------------- 125 (476)
T ss_pred cchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHc---------------
Confidence 37999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHH
Q psy9399 81 NNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~ 160 (453)
.+....++|++|||||+.|+.+.++.++...+ +.+..+.||.....+...+.+.++|+|+||++|+
T Consensus 126 -------------~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~ig-lr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~ 191 (476)
T KOG0330|consen 126 -------------EPKLFFALVLTPTRELAQQIAEQFEALGSGIG-LRVAVLVGGMDMMLQANQLSKKPHILVATPGRLW 191 (476)
T ss_pred -------------CCCCceEEEecCcHHHHHHHHHHHHHhccccC-eEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHH
Confidence 44557999999999999999999999998877 9999999999999999999999999999999999
Q ss_pred HHHh-cCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccc
Q psy9399 161 DHMN-SGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239 (453)
Q Consensus 161 ~~l~-~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (453)
+++. .+.+.+..++++|+||||+++++.|...+..+++.+|..+|++++|||.+..+..+......+|..+........
T Consensus 192 dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~t 271 (476)
T KOG0330|consen 192 DHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQT 271 (476)
T ss_pred HHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcc
Confidence 9998 566778999999999999999999999999999999999999999999999999999989999999998887777
Q ss_pred cccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCC
Q psy9399 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGR 319 (453)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 319 (453)
.+.+.|.+..++. ..+...+..+++...+..+||||++...++.++-.|+..|+.+..+||.|+++.|.-.++.|++|.
T Consensus 272 v~~lkQ~ylfv~~-k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~ 350 (476)
T KOG0330|consen 272 VDHLKQTYLFVPG-KDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGA 350 (476)
T ss_pred hHHhhhheEeccc-cccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccC
Confidence 7888888888854 445555666677777789999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHHHhhcCCCccccCC
Q psy9399 320 IKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVING 399 (453)
Q Consensus 320 ~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (453)
.+|||||+++++|+|+|.+++||+||.|.+..+|+||+||++|.|..|.++.+++..|.+.+.+|+..++..++....+.
T Consensus 351 r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~~ 430 (476)
T KOG0330|consen 351 RSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKVDK 430 (476)
T ss_pred CcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887765554
No 2
>KOG0331|consensus
Probab=100.00 E-value=1.2e-63 Score=470.76 Aligned_cols=365 Identities=42% Similarity=0.689 Sum_probs=330.1
Q ss_pred CCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhcccccc
Q psy9399 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNN 81 (453)
Q Consensus 2 ~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 81 (453)
.|..++|+++....+...||..|+|+|...||.++.|+|++..|.||||||++|++|++.++.......
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~----------- 160 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKL----------- 160 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccc-----------
Confidence 488999999999999999999999999999999999999999999999999999999999988631110
Q ss_pred ccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHH
Q psy9399 82 NKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLID 161 (453)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~ 161 (453)
....++++|||+|||||+.|+.+.+.+++.... +++.+++||.....+.+.+..+.+|+|+||++|.+
T Consensus 161 -----------~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~-~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d 228 (519)
T KOG0331|consen 161 -----------SRGDGPIVLVLAPTRELAVQVQAEAREFGKSLR-LRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLID 228 (519)
T ss_pred -----------cCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCC-ccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHH
Confidence 034578999999999999999999999998776 88999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhC-CCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccc--c
Q psy9399 162 HMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDAT-PVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE--K 238 (453)
Q Consensus 162 ~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~ 238 (453)
+++.+..+++++.++|+||||+|++++|...++.++..+ +...|+++.|||.|.++..++..++.+|..+.+.... .
T Consensus 229 ~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~ 308 (519)
T KOG0331|consen 229 LLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELK 308 (519)
T ss_pred HHHcCCccccceeEEEeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhh
Confidence 999999999999999999999999999999999999999 5555899999999999999999999999888877542 4
Q ss_pred ccccceEEEEEEcchhhHHHHHHHHHhh---CCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHH
Q psy9399 239 KQKNITQSILFVDDILHKNRLLDYLLRD---KRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENL 315 (453)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 315 (453)
...++.+....++ ...+...+..++.. ..++|+||||++++.|++++..|+..++++..+||+.++.+|..+++.|
T Consensus 309 a~~~i~qive~~~-~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~F 387 (519)
T KOG0331|consen 309 ANHNIRQIVEVCD-ETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGF 387 (519)
T ss_pred hhcchhhhhhhcC-HHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhc
Confidence 4467777777776 55555555555554 3567999999999999999999999999999999999999999999999
Q ss_pred hcCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHHHhhc
Q psy9399 316 RRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQ 390 (453)
Q Consensus 316 ~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 390 (453)
++|+..|||||+++++|+|+|+|++||++|+|.+.++|+||+||+||.|+.|.+++|+...+......+.+.+++
T Consensus 388 reG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e 462 (519)
T KOG0331|consen 388 REGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLRE 462 (519)
T ss_pred ccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998888877776643
No 3
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=3.9e-62 Score=481.41 Aligned_cols=368 Identities=41% Similarity=0.634 Sum_probs=333.7
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQN 80 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 80 (453)
++|++++|++.+.++|.++||..|+++|+++++.++++++++++||||||||++|++|+++.+..
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~--------------- 68 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDV--------------- 68 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhh---------------
Confidence 58999999999999999999999999999999999999999999999999999999999998754
Q ss_pred cccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHH
Q psy9399 81 NNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~ 160 (453)
.....+++|++||++|+.|+.+.++.+......+++..++||.....+...+..+++|+|+||++|.
T Consensus 69 -------------~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~ 135 (460)
T PRK11776 69 -------------KRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRIL 135 (460)
T ss_pred -------------ccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHH
Confidence 2234589999999999999999999988766568999999999988888888889999999999999
Q ss_pred HHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEeccccccc
Q psy9399 161 DHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240 (453)
Q Consensus 161 ~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (453)
+++.++...+.++++||+||+|++++++|...+..++..++...|++++|||+++.+..+...++.+|..+....... .
T Consensus 136 ~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~-~ 214 (460)
T PRK11776 136 DHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHD-L 214 (460)
T ss_pred HHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCC-C
Confidence 999988888999999999999999999999999999999999999999999999999999988888888887765443 2
Q ss_pred ccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCc
Q psy9399 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRI 320 (453)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 320 (453)
..+.+.++..... .+...+..++......++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|+.
T Consensus 215 ~~i~~~~~~~~~~-~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~ 293 (460)
T PRK11776 215 PAIEQRFYEVSPD-ERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSC 293 (460)
T ss_pred CCeeEEEEEeCcH-HHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 4466777666544 367777777777777899999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHHHhhcCCCccccC
Q psy9399 321 KILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVIN 398 (453)
Q Consensus 321 ~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (453)
+|||||+++++|+|+|++++||+++.|.+..+|+||+||+||.|..|.+++++.+.+...+..++++++..+....++
T Consensus 294 ~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~l~ 371 (460)
T PRK11776 294 SVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNWEPLP 371 (460)
T ss_pred cEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCceecCC
Confidence 999999999999999999999999999999999999999999999999999999999888889999888776654443
No 4
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-62 Score=482.16 Aligned_cols=366 Identities=46% Similarity=0.744 Sum_probs=339.1
Q ss_pred CCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhcccccc
Q psy9399 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNN 81 (453)
Q Consensus 2 ~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 81 (453)
+|++|++++.+.+++.+.||..|+++|..++|.++.|+|+++.|+||||||.+|++|+++.+....
T Consensus 30 ~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~-------------- 95 (513)
T COG0513 30 EFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV-------------- 95 (513)
T ss_pred CHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccc--------------
Confidence 699999999999999999999999999999999999999999999999999999999999976410
Q ss_pred ccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHH
Q psy9399 82 NKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLID 161 (453)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~ 161 (453)
......+||++|||+|+.|+.+.+..++.....+.+..++||.....+...+..+++|+|+||+++++
T Consensus 96 ------------~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD 163 (513)
T COG0513 96 ------------ERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLD 163 (513)
T ss_pred ------------ccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHH
Confidence 11111299999999999999999999998774588999999999999888888889999999999999
Q ss_pred HHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEeccccc--c
Q psy9399 162 HMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK--K 239 (453)
Q Consensus 162 ~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 239 (453)
++.++.+.+.++.++|+||||+|++++|.+.+..++..+|...|++++|||++..+..+...++.+|..+.+..... .
T Consensus 164 ~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~ 243 (513)
T COG0513 164 LIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERT 243 (513)
T ss_pred HHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888774333 6
Q ss_pred cccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCC
Q psy9399 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGR 319 (453)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 319 (453)
...+.+.++.+.....+...+..++......++||||+++..++.++..|...|+.+..+||++++.+|.++++.|++|+
T Consensus 244 ~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~ 323 (513)
T COG0513 244 LKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGE 323 (513)
T ss_pred ccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCC
Confidence 68899999999776678999999999888889999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChh-hHHHHHHHHHHhhcCCC
Q psy9399 320 IKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHA-ERMNIKKIERFTKQQIP 393 (453)
Q Consensus 320 ~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~ 393 (453)
.+|||||+++++|+|+|++++||+||.|.+.++|+||+||+||.|..|.++.|+.+. +...+..+++.....++
T Consensus 324 ~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 324 LRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred CCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999999999999975 88889999998877766
No 5
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.7e-61 Score=471.71 Aligned_cols=372 Identities=41% Similarity=0.625 Sum_probs=327.7
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQN 80 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 80 (453)
++|+++||++.+.++|..+||..|+++|+++++.+++|+|++++||||||||++|++|+++.+........
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~--------- 78 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPED--------- 78 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccc---------
Confidence 48999999999999999999999999999999999999999999999999999999999988865321100
Q ss_pred cccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHH
Q psy9399 81 NNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~ 160 (453)
....++++||++||++|+.|+.+.+..+....+ +++..++||.....+...+..+++|+|+||++|.
T Consensus 79 ------------~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~-~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~ 145 (423)
T PRK04837 79 ------------RKVNQPRALIMAPTRELAVQIHADAEPLAQATG-LKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLI 145 (423)
T ss_pred ------------cccCCceEEEECCcHHHHHHHHHHHHHHhccCC-ceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHH
Confidence 012356899999999999999999998877665 8899999999888887778888999999999999
Q ss_pred HHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCC--CccEEEEEeecChHHHHHHHhhcCCCeEEEeccccc
Q psy9399 161 DHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPV--TRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238 (453)
Q Consensus 161 ~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (453)
+++..+...+.+++++|+||||++++++|...+..++..++. ..+.+++|||++..+..+....+.+|..+.......
T Consensus 146 ~~l~~~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~ 225 (423)
T PRK04837 146 DYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQK 225 (423)
T ss_pred HHHHcCCcccccccEEEEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCc
Confidence 999888888999999999999999999999999999988875 456799999999988888888888888777665444
Q ss_pred ccccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcC
Q psy9399 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRG 318 (453)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 318 (453)
....+.+.+.. .....+...+..++......++||||+++..|+.+++.|...++.+..+||+|++.+|..+++.|++|
T Consensus 226 ~~~~i~~~~~~-~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g 304 (423)
T PRK04837 226 TGHRIKEELFY-PSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRG 304 (423)
T ss_pred CCCceeEEEEe-CCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcC
Confidence 44455554443 34455667777777777778999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHHHhhcCCCcc
Q psy9399 319 RIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIE 395 (453)
Q Consensus 319 ~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (453)
+++|||||+++++|+|+|++++||++|+|.+..+|+||+||+||.|+.|.+++|+.+.+...+..+++++..+++..
T Consensus 305 ~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~~ 381 (423)
T PRK04837 305 DLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVS 381 (423)
T ss_pred CCcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999888999998888876544
No 6
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.2e-61 Score=473.70 Aligned_cols=379 Identities=44% Similarity=0.730 Sum_probs=337.2
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQN 80 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 80 (453)
++|++|||++++.++|.++||..|+++|+++++.+++++|++++||||||||++|++|+++.+.......
T Consensus 1 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~---------- 70 (456)
T PRK10590 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHA---------- 70 (456)
T ss_pred CCHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhccccc----------
Confidence 6899999999999999999999999999999999999999999999999999999999999876532110
Q ss_pred cccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHH
Q psy9399 81 NNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~ 160 (453)
......++||++||++|+.|+.+.+..+..... +.+..++||.....+...+...++|+|+||++|.
T Consensus 71 ------------~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~-~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~ 137 (456)
T PRK10590 71 ------------KGRRPVRALILTPTRELAAQIGENVRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLL 137 (456)
T ss_pred ------------ccCCCceEEEEeCcHHHHHHHHHHHHHHhccCC-CEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHH
Confidence 011235899999999999999999999877665 8888899999988887788888999999999999
Q ss_pred HHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEeccccccc
Q psy9399 161 DHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240 (453)
Q Consensus 161 ~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (453)
+++......++++++|||||+|++++++|...+..++..++...|++++|||+++.+..+...++.++..+.........
T Consensus 138 ~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~ 217 (456)
T PRK10590 138 DLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTAS 217 (456)
T ss_pred HHHHcCCcccccceEEEeecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccc
Confidence 99888888899999999999999999999999999999999999999999999998888888888888877765544444
Q ss_pred ccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCc
Q psy9399 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRI 320 (453)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 320 (453)
..+.+.+... +...+..++..++......++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|++
T Consensus 218 ~~i~~~~~~~-~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~ 296 (456)
T PRK10590 218 EQVTQHVHFV-DKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 (456)
T ss_pred cceeEEEEEc-CHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 5555555544 445566777777777777899999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHHHhhcCCCccccCCC
Q psy9399 321 KILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGF 400 (453)
Q Consensus 321 ~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (453)
+|||||+++++|+|+|++++||++++|.+..+|+||+||+||.|..|.+++++...+...++.+++.++.+++...+.++
T Consensus 297 ~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~~~~~~~~~ 376 (456)
T PRK10590 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGY 376 (456)
T ss_pred cEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCCcccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887777777
Q ss_pred Ccc
Q psy9399 401 EPK 403 (453)
Q Consensus 401 ~~~ 403 (453)
.+.
T Consensus 377 ~~~ 379 (456)
T PRK10590 377 EPD 379 (456)
T ss_pred ccC
Confidence 654
No 7
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=6.5e-61 Score=470.00 Aligned_cols=380 Identities=42% Similarity=0.715 Sum_probs=343.5
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQN 80 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 80 (453)
++|++++|++.+.+.|.+.||..|+++|+++++.++++++++++||||+|||++|++|+++.+......
T Consensus 1 ~~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~----------- 69 (434)
T PRK11192 1 TTFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR----------- 69 (434)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc-----------
Confidence 689999999999999999999999999999999999999999999999999999999999887642110
Q ss_pred cccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHH
Q psy9399 81 NNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~ 160 (453)
.....++||++||++|+.|+.+.+..+....+ +.+..++||.....+...+..+++|+|+||++|+
T Consensus 70 -------------~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~-~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~ 135 (434)
T PRK11192 70 -------------KSGPPRILILTPTRELAMQVADQARELAKHTH-LDIATITGGVAYMNHAEVFSENQDIVVATPGRLL 135 (434)
T ss_pred -------------CCCCceEEEECCcHHHHHHHHHHHHHHHccCC-cEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHH
Confidence 12346899999999999999999999887665 8999999999988888888888999999999999
Q ss_pred HHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecCh-HHHHHHHhhcCCCeEEEecccccc
Q psy9399 161 DHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDG-IVGNMAENITKDPLILKVNSIEKK 239 (453)
Q Consensus 161 ~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 239 (453)
+++..+...+.++++||+||+|++++++|...+..+...++...|++++|||++. .+..+...++.++..+........
T Consensus 136 ~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 215 (434)
T PRK11192 136 QYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRE 215 (434)
T ss_pred HHHHcCCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCccc
Confidence 9999888888999999999999999999999999999999988999999999974 577788888888888777665555
Q ss_pred cccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCC
Q psy9399 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGR 319 (453)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 319 (453)
...+.+.+...+....+..++..++......++||||++++.++.+++.|+..++.+..+||+|++.+|..+++.|++|+
T Consensus 216 ~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~ 295 (434)
T PRK11192 216 RKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGR 295 (434)
T ss_pred ccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCC
Confidence 56677777777767778888888888777789999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHHHhhcCCCccccCC
Q psy9399 320 IKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVING 399 (453)
Q Consensus 320 ~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (453)
++|||||+++++|+|+|++++||+++.|.+...|+||+||+||.|..|.+++++...|...+..+++++...+..+.+..
T Consensus 296 ~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~~~~~~~~ 375 (434)
T PRK11192 296 VNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPLKARVIDE 375 (434)
T ss_pred CcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888887
Q ss_pred CCcchh
Q psy9399 400 FEPKKR 405 (453)
Q Consensus 400 ~~~~~~ 405 (453)
+.|...
T Consensus 376 ~~~~~~ 381 (434)
T PRK11192 376 LRPKTK 381 (434)
T ss_pred cccccc
Confidence 777433
No 8
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.1e-60 Score=479.03 Aligned_cols=367 Identities=43% Similarity=0.691 Sum_probs=331.9
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQN 80 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 80 (453)
++|++++|++++.++|.++||.+|+++|+++++.+++++++++.||||+|||++|++|+++.+..
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~--------------- 70 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDP--------------- 70 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhh---------------
Confidence 47999999999999999999999999999999999999999999999999999999999988754
Q ss_pred cccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHH
Q psy9399 81 NNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~ 160 (453)
....+++||++||++|+.|+++.+..+......+.+..++||.....+...+..+++|+|+||++++
T Consensus 71 -------------~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~ 137 (629)
T PRK11634 71 -------------ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLL 137 (629)
T ss_pred -------------ccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHH
Confidence 2235689999999999999999999988776678999999999988888888888999999999999
Q ss_pred HHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEeccccccc
Q psy9399 161 DHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240 (453)
Q Consensus 161 ~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (453)
+++..+.+.++++++||+||||.+++++|...+..++..++...|++++|||++..+..+...++.++..+.+.......
T Consensus 138 d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~ 217 (629)
T PRK11634 138 DHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTR 217 (629)
T ss_pred HHHHcCCcchhhceEEEeccHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccC
Confidence 99998888899999999999999999999999999999999999999999999999999998899998887776655444
Q ss_pred ccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCc
Q psy9399 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRI 320 (453)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 320 (453)
..+.+.+..+. ...+...+..++......++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|++
T Consensus 218 ~~i~q~~~~v~-~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~ 296 (629)
T PRK11634 218 PDISQSYWTVW-GMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRL 296 (629)
T ss_pred CceEEEEEEec-hhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCC
Confidence 56666666654 33455666666666666799999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHHHhhcCCCccc
Q psy9399 321 KILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEV 396 (453)
Q Consensus 321 ~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (453)
+|||||+++++|+|+|++++||++|.|.+..+|+||+||+||.|+.|.+++++++.+...++.+++.++..++...
T Consensus 297 ~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~ 372 (629)
T PRK11634 297 DILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVE 372 (629)
T ss_pred CEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcceec
Confidence 9999999999999999999999999999999999999999999999999999999998888888888777765543
No 9
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.5e-59 Score=468.53 Aligned_cols=371 Identities=39% Similarity=0.609 Sum_probs=322.9
Q ss_pred CCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhcccccc
Q psy9399 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNN 81 (453)
Q Consensus 2 ~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 81 (453)
+|++++|++.+.++|..+||..|+++|+++|+.+++++|+++.||||||||++|++|+++.+.......
T Consensus 10 ~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~----------- 78 (572)
T PRK04537 10 TFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALA----------- 78 (572)
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccc-----------
Confidence 699999999999999999999999999999999999999999999999999999999999876521100
Q ss_pred ccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHH
Q psy9399 82 NKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLID 161 (453)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~ 161 (453)
......+++|||+||++|+.|+.+.+..++...+ +++..++|+.....+...+..+++|+|+||++|++
T Consensus 79 ----------~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~-i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~ 147 (572)
T PRK04537 79 ----------DRKPEDPRALILAPTRELAIQIHKDAVKFGADLG-LRFALVYGGVDYDKQRELLQQGVDVIIATPGRLID 147 (572)
T ss_pred ----------ccccCCceEEEEeCcHHHHHHHHHHHHHHhccCC-ceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHH
Confidence 0012246899999999999999999999887655 88999999999888877777889999999999999
Q ss_pred HHhcC-CCCCCCccEEEEechhhhcccCChHHHHHHHhhCCC--CccEEEEEeecChHHHHHHHhhcCCCeEEEeccccc
Q psy9399 162 HMNSG-KINFSHLQILVLDEADRMLDMGFINDIEKIVDATPV--TRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238 (453)
Q Consensus 162 ~l~~~-~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (453)
++... ...+..+++|||||+|++.+.+|...+..++..++. ..|++++|||++..+..+...++..+..+.......
T Consensus 148 ~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~ 227 (572)
T PRK04537 148 YVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETI 227 (572)
T ss_pred HHHhccccchhheeeeEecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccc
Confidence 88765 456788999999999999999999999999998886 679999999999888888877887776665544333
Q ss_pred ccccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcC
Q psy9399 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRG 318 (453)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 318 (453)
....+.+.+... ....+...+..++....+.++||||++++.++.+++.|...++.+..+||+|++.+|..+++.|++|
T Consensus 228 ~~~~i~q~~~~~-~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G 306 (572)
T PRK04537 228 TAARVRQRIYFP-ADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKG 306 (572)
T ss_pred cccceeEEEEec-CHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcC
Confidence 334455555544 3455666677777777778999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHHHhhcCCCcc
Q psy9399 319 RIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIE 395 (453)
Q Consensus 319 ~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (453)
+++|||||+++++|+|+|++++||++|.|.+..+|+||+||+||.|..|.+++|+.+.+...+..+++++...++..
T Consensus 307 ~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~~~ 383 (572)
T PRK04537 307 QLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPVE 383 (572)
T ss_pred CCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999998888889988887766543
No 10
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.1e-59 Score=466.09 Aligned_cols=366 Identities=39% Similarity=0.623 Sum_probs=317.4
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQN 80 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 80 (453)
++|+++++++.+.++|...||..|+++|.+++|.++++++++++||||||||++|++|++..+......
T Consensus 130 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~----------- 198 (545)
T PTZ00110 130 VSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLL----------- 198 (545)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccc-----------
Confidence 479999999999999999999999999999999999999999999999999999999998876542100
Q ss_pred cccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHH
Q psy9399 81 NNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~ 160 (453)
....++.+|||+||++|+.|+.+.+..++.... +++..++||.....+...+..+++|+|+||++|.
T Consensus 199 ------------~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~-i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~ 265 (545)
T PTZ00110 199 ------------RYGDGPIVLVLAPTRELAEQIREQCNKFGASSK-IRNTVAYGGVPKRGQIYALRRGVEILIACPGRLI 265 (545)
T ss_pred ------------cCCCCcEEEEECChHHHHHHHHHHHHHHhcccC-ccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 022467899999999999999999999887654 8888999999888888888889999999999999
Q ss_pred HHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcC-CCeEEEecccc-c
Q psy9399 161 DHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITK-DPLILKVNSIE-K 238 (453)
Q Consensus 161 ~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~-~ 238 (453)
+++..+...+.++++||+||||++++++|...+..++..++...|++++|||++..+..+...++. .+..+...... .
T Consensus 266 d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~ 345 (545)
T PTZ00110 266 DFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLT 345 (545)
T ss_pred HHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccc
Confidence 999988888999999999999999999999999999999999999999999999988888887765 46666554432 2
Q ss_pred ccccceEEEEEEcchhhHHHHHHHHHhhC--CCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHh
Q psy9399 239 KQKNITQSILFVDDILHKNRLLDYLLRDK--RVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLR 316 (453)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 316 (453)
....+.+.+..+... .+...+..++... .+.++||||++++.|+.+++.|...++.+..+||++++.+|..+++.|+
T Consensus 346 ~~~~i~q~~~~~~~~-~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~ 424 (545)
T PTZ00110 346 ACHNIKQEVFVVEEH-EKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFK 424 (545)
T ss_pred cCCCeeEEEEEEech-hHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHh
Confidence 234566666555443 3344444444432 5679999999999999999999999999999999999999999999999
Q ss_pred cCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHHHhhcC
Q psy9399 317 RGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQ 391 (453)
Q Consensus 317 ~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 391 (453)
+|+.+|||||+++++|+|+|++++||++|+|.+..+|+||+||+||.|..|.+++|+++.+......+.+.++..
T Consensus 425 ~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~ 499 (545)
T PTZ00110 425 TGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREA 499 (545)
T ss_pred cCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999999999999888877777766543
No 11
>KOG0328|consensus
Probab=100.00 E-value=7e-60 Score=400.78 Aligned_cols=363 Identities=35% Similarity=0.587 Sum_probs=341.9
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQN 80 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 80 (453)
.+|+++||.+++++.+-..||..|+.+|+.|++.++.|++++..|..|+|||.+|-+.+++.+.-
T Consensus 27 ~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~--------------- 91 (400)
T KOG0328|consen 27 PTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDI--------------- 91 (400)
T ss_pred cchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccc---------------
Confidence 37999999999999999999999999999999999999999999999999999888887776544
Q ss_pred cccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHH
Q psy9399 81 NNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~ 160 (453)
.....+++++.|||+|+.|+.+.+..++.+.+ +.+..+.||....+..+.+.-+.+++.+||++++
T Consensus 92 -------------~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mn-vq~hacigg~n~gedikkld~G~hvVsGtPGrv~ 157 (400)
T KOG0328|consen 92 -------------SVRETQALILSPTRELAVQIQKVILALGDYMN-VQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVL 157 (400)
T ss_pred -------------ccceeeEEEecChHHHHHHHHHHHHHhccccc-ceEEEEecCCccchhhhhhcccceEeeCCCchHH
Confidence 23345899999999999999999999987776 8999999999988888888889999999999999
Q ss_pred HHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEeccccccc
Q psy9399 161 DHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240 (453)
Q Consensus 161 ~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (453)
+.++++.+.-+.+.++|+||++.|++.+|...+..++..+|...|++++|||+|..+....+.+..+|..+.+...+...
T Consensus 158 dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltl 237 (400)
T KOG0328|consen 158 DMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTL 237 (400)
T ss_pred HHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred ccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCc
Q psy9399 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRI 320 (453)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 320 (453)
..+.+.++.++....+.+.+..+.....-.+++|||||+..++.+.+.+++.++.+..+||+|++++|.++...|++|+.
T Consensus 238 EgIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~S 317 (400)
T KOG0328|consen 238 EGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKS 317 (400)
T ss_pred hhhhhheeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCc
Confidence 89999999998888899999998888777899999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHHHhhcCC
Q psy9399 321 KILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQI 392 (453)
Q Consensus 321 ~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (453)
+||++|++-++|+|+|.+++||+||+|.+.+.|+||+||.||.|+.|-++-|+...|-..+..+++++.-.+
T Consensus 318 rvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i 389 (400)
T KOG0328|consen 318 RVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQI 389 (400)
T ss_pred eEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999887654
No 12
>KOG0340|consensus
Probab=100.00 E-value=1.3e-59 Score=411.33 Aligned_cols=368 Identities=36% Similarity=0.549 Sum_probs=326.0
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQN 80 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 80 (453)
++|+.|||++|+.+.|.++|+..|||+|+.|+|+|+.|+|++-+|.||||||.+|.+|+++.+..
T Consensus 7 ~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLse--------------- 71 (442)
T KOG0340|consen 7 KPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSE--------------- 71 (442)
T ss_pred CchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhcc---------------
Confidence 47999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHH
Q psy9399 81 NNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~ 160 (453)
.+.+.-++|++||++|+.|+.++|...+.... +++..++||.+...+...+...++++|+||+++.
T Consensus 72 -------------dP~giFalvlTPTrELA~QiaEQF~alGk~l~-lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRla 137 (442)
T KOG0340|consen 72 -------------DPYGIFALVLTPTRELALQIAEQFIALGKLLN-LKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLA 137 (442)
T ss_pred -------------CCCcceEEEecchHHHHHHHHHHHHHhccccc-ceEEEEEccHHHhhhhhhcccCCCeEecCccccc
Confidence 66788999999999999999999999887766 9999999999999999999999999999999999
Q ss_pred HHHhcCC----CCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCC--CeEEEec
Q psy9399 161 DHMNSGK----INFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKD--PLILKVN 234 (453)
Q Consensus 161 ~~l~~~~----~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~--~~~~~~~ 234 (453)
.++..+. ..++++.++|+|||+++++..|...+..+...+|..+|.+++|||+++.+..+...-... ...+...
T Consensus 138 d~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~ 217 (442)
T KOG0340|consen 138 DHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVI 217 (442)
T ss_pred cccccCCccchhhhhceeeEEecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEecc
Confidence 9887652 237889999999999999999999999999999999999999999988777665544443 3444444
Q ss_pred ccccccccceEEEEEEcchhhHHHHHHHHHhhC--CCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHH
Q psy9399 235 SIEKKQKNITQSILFVDDILHKNRLLDYLLRDK--RVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTL 312 (453)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 312 (453)
+.......+.+.++.++......-++..+-... ..+.++||+|+..+|+.++..|+..++.+..+|+.|++.+|...+
T Consensus 218 ~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aL 297 (442)
T KOG0340|consen 218 DGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAAL 297 (442)
T ss_pred CCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHH
Confidence 444455677788887755444333333332222 467899999999999999999999999999999999999999999
Q ss_pred HHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHHHhhcCC
Q psy9399 313 ENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQI 392 (453)
Q Consensus 313 ~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (453)
.+|+++..+|||||+++++|+|+|.|++||++|.|.++.+|+||+||++|.|..|.++.++.++|.+.+..+++-.+..+
T Consensus 298 srFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl 377 (442)
T KOG0340|consen 298 SRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKL 377 (442)
T ss_pred HHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888877
Q ss_pred Ccccc
Q psy9399 393 PIEVI 397 (453)
Q Consensus 393 ~~~~~ 397 (453)
.....
T Consensus 378 ~e~~~ 382 (442)
T KOG0340|consen 378 TEYNK 382 (442)
T ss_pred ccccc
Confidence 65443
No 13
>KOG0333|consensus
Probab=100.00 E-value=2.9e-59 Score=428.23 Aligned_cols=366 Identities=38% Similarity=0.616 Sum_probs=332.5
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQN 80 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 80 (453)
.||+..|++.++++.+...|+..|+|+|..++|..++.+|++..|.||||||.+|++|++..+.+-.. +..
T Consensus 245 rnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~----~~~----- 315 (673)
T KOG0333|consen 245 RNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPP----MAR----- 315 (673)
T ss_pred cChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCC----cch-----
Confidence 48999999999999999999999999999999999999999999999999999999999987765221 111
Q ss_pred cccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHH
Q psy9399 81 NNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~ 160 (453)
+-....++.++++.||++|++|+.++-.+|++... ++++.+.||....++--.+..+|+|+|+||++|.
T Consensus 316 ----------~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg-~r~vsvigg~s~EEq~fqls~gceiviatPgrLi 384 (673)
T KOG0333|consen 316 ----------LENNIEGPYAIILAPTRELAQQIEEETNKFGKPLG-IRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLI 384 (673)
T ss_pred ----------hhhcccCceeeeechHHHHHHHHHHHHHHhccccc-ceEEEEecccchhhhhhhhhccceeeecCchHHH
Confidence 11134678999999999999999999999998887 9999999999999987788889999999999999
Q ss_pred HHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCC-------------------------ccEEEEEeecCh
Q psy9399 161 DHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVT-------------------------RQTMLFSATLDG 215 (453)
Q Consensus 161 ~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~-------------------------~~~i~~SAT~~~ 215 (453)
+.+.+..+.+..+.++|+|||++|.|++|...+..++..+|.. +|.+.+|||.++
T Consensus 385 d~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p 464 (673)
T KOG0333|consen 385 DSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPP 464 (673)
T ss_pred HHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCCh
Confidence 9999999889999999999999999999999999999988631 589999999999
Q ss_pred HHHHHHHhhcCCCeEEEecccccccccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCc
Q psy9399 216 IVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFL 295 (453)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~ 295 (453)
.++.+++.++.+|..+.........+.+.|.++.+..... ...+..++......++|||+|+++.|+.+++.|.+.|++
T Consensus 465 ~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k-~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~ 543 (673)
T KOG0333|consen 465 AVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEK-RKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYK 543 (673)
T ss_pred HHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHH-HHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccce
Confidence 9999999999999999999998888999999999876665 555555666666789999999999999999999999999
Q ss_pred eeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeCh
Q psy9399 296 AAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNH 375 (453)
Q Consensus 296 ~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~ 375 (453)
+..+||+-++++|..+++.|++|..+|||||+++++|||+|+|++||+||++++.++|.||+||+||.|+.|.++.|+++
T Consensus 544 ~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~ 623 (673)
T KOG0333|consen 544 VTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTP 623 (673)
T ss_pred EEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHH
Q psy9399 376 AERMNIKKIERF 387 (453)
Q Consensus 376 ~~~~~~~~~~~~ 387 (453)
.|...+..+...
T Consensus 624 ~dt~v~ydLkq~ 635 (673)
T KOG0333|consen 624 ADTAVFYDLKQA 635 (673)
T ss_pred chhHHHHHHHHH
Confidence 996655555443
No 14
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=2e-58 Score=457.95 Aligned_cols=366 Identities=33% Similarity=0.572 Sum_probs=314.4
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQN 80 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 80 (453)
++|+++++++.+.++|...||..|+++|.++++.+++|+++++.||||||||++|++|++..+.......
T Consensus 121 ~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~---------- 190 (518)
T PLN00206 121 LSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGH---------- 190 (518)
T ss_pred cCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhcccc----------
Confidence 4799999999999999999999999999999999999999999999999999999999998775421100
Q ss_pred cccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHH
Q psy9399 81 NNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~ 160 (453)
.....++++||++||++|+.|+.+.+..+....+ ++...++||.....+...+..+++|+|+||++|.
T Consensus 191 -----------~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~-~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~ 258 (518)
T PLN00206 191 -----------PSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLP-FKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLI 258 (518)
T ss_pred -----------ccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCC-ceEEEEECCcchHHHHHHhcCCCCEEEECHHHHH
Confidence 0012467999999999999999999988876655 7888899998888877777788999999999999
Q ss_pred HHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEeccccccc
Q psy9399 161 DHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240 (453)
Q Consensus 161 ~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (453)
+.+......+.++++||+||||++++++|...+..++..++ ..|++++|||+++.+..+...+..++..+.........
T Consensus 259 ~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~ 337 (518)
T PLN00206 259 DLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPN 337 (518)
T ss_pred HHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCC
Confidence 99998888899999999999999999999999999988875 46999999999999999988888888877776544444
Q ss_pred ccceEEEEEEcchhhHHHHHHHHHhhC--CCCcEEEEeccchhHHHHHHHHhh-CCCceeecCCCCCHHHHHHHHHHHhc
Q psy9399 241 KNITQSILFVDDILHKNRLLDYLLRDK--RVGQAVVFTATKRDADIIADRLNI-SGFLAAPLHGDLHQNARNRTLENLRR 317 (453)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~lvf~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~r~~~~~~f~~ 317 (453)
..+.+........... ..+..++... ...++||||+++..++.+++.|.. .++.+..+||++++.+|..+++.|++
T Consensus 338 ~~v~q~~~~~~~~~k~-~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~ 416 (518)
T PLN00206 338 KAVKQLAIWVETKQKK-QKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLV 416 (518)
T ss_pred cceeEEEEeccchhHH-HHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHC
Confidence 4555655555444333 3333344332 235899999999999999999975 68899999999999999999999999
Q ss_pred CCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHHHhhc
Q psy9399 318 GRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQ 390 (453)
Q Consensus 318 g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 390 (453)
|+.+|||||+++++|+|+|++++||++|+|.+..+|+||+||+||.|..|.+++|+++.+...+..+.+.++.
T Consensus 417 G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~ 489 (518)
T PLN00206 417 GEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKS 489 (518)
T ss_pred CCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999888777777766653
No 15
>KOG0345|consensus
Probab=100.00 E-value=9e-59 Score=420.11 Aligned_cols=361 Identities=34% Similarity=0.533 Sum_probs=318.1
Q ss_pred CCCCCCCCC--HHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccc
Q psy9399 1 MNFKSIGLH--ELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLN 78 (453)
Q Consensus 1 ~~~~~l~l~--~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~ 78 (453)
++|++++.+ +++.+++..+||..+||+|..++|.+++++|+++.++||||||++|++|+++.+.++...-
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~-------- 75 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKT-------- 75 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCC--------
Confidence 478888877 9999999999999999999999999999999999999999999999999999986644321
Q ss_pred cccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhc-CCCCEEEeChH
Q psy9399 79 QNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLS-RNPEILLATPG 157 (453)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~T~~ 157 (453)
.+....+|||.|||+|+.|+.+.+..|......+++..+.||....+...... .++.|+|+||+
T Consensus 76 ---------------~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPG 140 (567)
T KOG0345|consen 76 ---------------PPGQVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPG 140 (567)
T ss_pred ---------------CccceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCch
Confidence 22345899999999999999999999988777899999999988877665554 47889999999
Q ss_pred HHHHHHhcCC--CCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecc
Q psy9399 158 RLIDHMNSGK--INFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNS 235 (453)
Q Consensus 158 ~l~~~l~~~~--~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 235 (453)
+|.+.+.++. +.++++.++|+||||++++.+|...+..++..+|+++++=++|||....+.++....+.+|..+.+..
T Consensus 141 RL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~ 220 (567)
T KOG0345|consen 141 RLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKE 220 (567)
T ss_pred hHHHHHhchhhhccccccceEEecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecc
Confidence 9999998744 44669999999999999999999999999999999999999999999999999999999999988876
Q ss_pred ccc--ccccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhh--CCCceeecCCCCCHHHHHHH
Q psy9399 236 IEK--KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNI--SGFLAAPLHGDLHQNARNRT 311 (453)
Q Consensus 236 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~--~~~~~~~~~~~~~~~~r~~~ 311 (453)
... .+..+...+..+. ...+...+..++.....++++||++|...++..+..+.. ....+..+||+|.+..|.++
T Consensus 221 k~~~~tPS~L~~~Y~v~~-a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~ 299 (567)
T KOG0345|consen 221 KSKSATPSSLALEYLVCE-ADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKV 299 (567)
T ss_pred cccccCchhhcceeeEec-HHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHH
Confidence 443 4445555666664 455666666666667778999999999999999999876 36788999999999999999
Q ss_pred HHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHH
Q psy9399 312 LENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIE 385 (453)
Q Consensus 312 ~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~ 385 (453)
++.|++..-.+|+||+++++|+|+|++++||++|+|.++..|.||+||++|.|..|.+++|+.+.+..++..+.
T Consensus 300 ~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~ 373 (567)
T KOG0345|consen 300 LEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLR 373 (567)
T ss_pred HHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHH
Confidence 99999988889999999999999999999999999999999999999999999999999999998887776653
No 16
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.3e-57 Score=448.51 Aligned_cols=371 Identities=37% Similarity=0.627 Sum_probs=322.6
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQN 80 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 80 (453)
++|++++|++.+.++|.++||..|+++|.++++.+++|+|+++.+|||||||++|++|+++.+........
T Consensus 87 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~--------- 157 (475)
T PRK01297 87 TRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKE--------- 157 (475)
T ss_pred CCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccc---------
Confidence 36899999999999999999999999999999999999999999999999999999999998875321100
Q ss_pred cccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhc-CCCCEEEeChHHH
Q psy9399 81 NNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLS-RNPEILLATPGRL 159 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~T~~~l 159 (453)
...+..++|||+||++|+.|+.+.+..+....+ +.+..++||.....+.+.+. ..++|+|+||++|
T Consensus 158 ------------~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~~-~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~L 224 (475)
T PRK01297 158 ------------RYMGEPRALIIAPTRELVVQIAKDAAALTKYTG-LNVMTFVGGMDFDKQLKQLEARFCDILVATPGRL 224 (475)
T ss_pred ------------cccCCceEEEEeCcHHHHHHHHHHHHHhhccCC-CEEEEEEccCChHHHHHHHhCCCCCEEEECHHHH
Confidence 011246899999999999999999999876655 78888899887766655553 4689999999999
Q ss_pred HHHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCC--CccEEEEEeecChHHHHHHHhhcCCCeEEEecccc
Q psy9399 160 IDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPV--TRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237 (453)
Q Consensus 160 ~~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (453)
..++..+...++++++|||||+|.+.+.+|...+..++..++. ..|++++|||++.....+...+..++..+......
T Consensus 225 l~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~ 304 (475)
T PRK01297 225 LDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPEN 304 (475)
T ss_pred HHHHHcCCcccccCceEEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCc
Confidence 9988888888899999999999999999999999999888764 46999999999988888888888888887766555
Q ss_pred cccccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhc
Q psy9399 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRR 317 (453)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 317 (453)
.....+.+.+.... ...+...+..++......++||||++++.++.+++.|...++.+..+||+++..+|.++++.|++
T Consensus 305 ~~~~~~~~~~~~~~-~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~ 383 (475)
T PRK01297 305 VASDTVEQHVYAVA-GSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFRE 383 (475)
T ss_pred CCCCcccEEEEEec-chhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhC
Confidence 44455555555543 34456667777777777899999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHHHhhcCCCc
Q psy9399 318 GRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394 (453)
Q Consensus 318 g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (453)
|+++|||||+++++|+|+|++++||+++.|.+..+|+||+||+||.|.+|.++++..+.|...+..++++++.+++.
T Consensus 384 G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~~ 460 (475)
T PRK01297 384 GKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKISC 460 (475)
T ss_pred CCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999988899999988877643
No 17
>KOG0342|consensus
Probab=100.00 E-value=1.2e-58 Score=422.16 Aligned_cols=359 Identities=35% Similarity=0.560 Sum_probs=322.5
Q ss_pred CCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhcccccc
Q psy9399 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNN 81 (453)
Q Consensus 2 ~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 81 (453)
-|+...|++...+++..+||..+|++|+..++.++.|+++++.|-||+|||++||+|+++.+.+..-.
T Consensus 83 ~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~------------ 150 (543)
T KOG0342|consen 83 RFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFK------------ 150 (543)
T ss_pred HhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccC------------
Confidence 37888999999999999999999999999999999999999999999999999999999998874422
Q ss_pred ccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHH
Q psy9399 82 NKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLID 161 (453)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~ 161 (453)
...+-.++|+||||+|+.|++.+++++..++..+.+..+.||.......+.+..++.|+|+||++|.+
T Consensus 151 ------------~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlD 218 (543)
T KOG0342|consen 151 ------------PRNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLD 218 (543)
T ss_pred ------------CCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHh
Confidence 23456899999999999999999999998886799999999999999999988899999999999999
Q ss_pred HHhcCC-CCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCC-CeEEEecc--cc
Q psy9399 162 HMNSGK-INFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKD-PLILKVNS--IE 237 (453)
Q Consensus 162 ~l~~~~-~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~--~~ 237 (453)
++++.. +.+++.+++|+||||++++.+|...+..++..+|..+|.+++|||.+..+..++...+.. +..+.+.. ..
T Consensus 219 HlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~ 298 (543)
T KOG0342|consen 219 HLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGER 298 (543)
T ss_pred HhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCc
Confidence 998754 345778999999999999999999999999999999999999999999999998877665 66666654 33
Q ss_pred cccccceEEEEEEcchhhHHHHHHHHHhhCCC-CcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHh
Q psy9399 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRV-GQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLR 316 (453)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 316 (453)
.....+.|.++..+...+ ..++..+++.+.. .+++|||+|...+..+++.|+...++|..+||+.++..|..+..+|+
T Consensus 299 ~The~l~Qgyvv~~~~~~-f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~ 377 (543)
T KOG0342|consen 299 ETHERLEQGYVVAPSDSR-FSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFC 377 (543)
T ss_pred chhhcccceEEeccccch-HHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHh
Confidence 344677887877766655 4555555555444 89999999999999999999999999999999999999999999999
Q ss_pred cCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHH
Q psy9399 317 RGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIE 385 (453)
Q Consensus 317 ~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~ 385 (453)
+.+..|||||+++++|+|+|+|++||++|+|.++.+|+||+||+||.|+.|.+++++.+.+...++.++
T Consensus 378 kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 378 KAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred hcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999998888777
No 18
>KOG0338|consensus
Probab=100.00 E-value=1.8e-59 Score=428.01 Aligned_cols=361 Identities=39% Similarity=0.638 Sum_probs=330.8
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQN 80 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 80 (453)
.||.+++||.++++++..+||..|+|+|..+||..+-|+++..||.||||||-+|++|+++++..+....
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~---------- 250 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKV---------- 250 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccC----------
Confidence 3899999999999999999999999999999999999999999999999999999999999998754321
Q ss_pred cccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHH
Q psy9399 81 NNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~ 160 (453)
..-+|||||||++|+.|+....+.+..+.. +.++...||.+...+...+...|||+|+||++|.
T Consensus 251 ---------------~~TRVLVL~PTRELaiQv~sV~~qlaqFt~-I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlI 314 (691)
T KOG0338|consen 251 ---------------AATRVLVLVPTRELAIQVHSVTKQLAQFTD-ITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLI 314 (691)
T ss_pred ---------------cceeEEEEeccHHHHHHHHHHHHHHHhhcc-ceeeeeecCccHHHHHHHHhhCCCEEEecchhHH
Confidence 234899999999999999999999888877 9999999999999999999999999999999999
Q ss_pred HHHhcCC-CCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccc
Q psy9399 161 DHMNSGK-INFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239 (453)
Q Consensus 161 ~~l~~~~-~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (453)
+++.+.. +.+.++.++|+|||++|++.+|...+..++..+|+.+|.+++|||++..+..+....+.+|..+.+......
T Consensus 315 DHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~ 394 (691)
T KOG0338|consen 315 DHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDT 394 (691)
T ss_pred HHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCcccc
Confidence 9998754 568999999999999999999999999999999999999999999999999999999999999999887777
Q ss_pred cccceEEEEEEcc--hhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhc
Q psy9399 240 QKNITQSILFVDD--ILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRR 317 (453)
Q Consensus 240 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 317 (453)
...+.+.++.+.+ ...+..++..++...-..+++||+.|++.|.++.-.|.-.|..+.-+||.+++.+|...++.|++
T Consensus 395 a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~ 474 (691)
T KOG0338|consen 395 APKLTQEFIRIRPKREGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKK 474 (691)
T ss_pred chhhhHHHheeccccccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHh
Confidence 7788888776643 23455566666666556799999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHHH
Q psy9399 318 GRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERF 387 (453)
Q Consensus 318 g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~ 387 (453)
++++|||||+++++|+||+++..||+|..|.+...|+||+||+.|.|+.|.+++|+.+.++..++.+-.-
T Consensus 475 ~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 475 EEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred ccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999998887766443
No 19
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=2e-57 Score=442.40 Aligned_cols=364 Identities=32% Similarity=0.556 Sum_probs=321.4
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQN 80 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 80 (453)
.+|+++|+++.+.++|..+||..|+++|.++++.+++++++++.||||||||++|++|++..+..
T Consensus 28 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~--------------- 92 (401)
T PTZ00424 28 DSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY--------------- 92 (401)
T ss_pred CCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC---------------
Confidence 47999999999999999999999999999999999999999999999999999999999987653
Q ss_pred cccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHH
Q psy9399 81 NNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~ 160 (453)
...+.++||++|+++|+.|+.+.+..++.... +.+..+.|+.........+..+++|+|+||+++.
T Consensus 93 -------------~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~ 158 (401)
T PTZ00424 93 -------------DLNACQALILAPTRELAQQIQKVVLALGDYLK-VRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVY 158 (401)
T ss_pred -------------CCCCceEEEECCCHHHHHHHHHHHHHHhhhcC-ceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHH
Confidence 22356899999999999999999988876544 7777888888877777777778899999999999
Q ss_pred HHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEeccccccc
Q psy9399 161 DHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240 (453)
Q Consensus 161 ~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (453)
+.+......++++++||+||+|++.+.++...+..++..++...|++++|||+++....+...+..++..+.........
T Consensus 159 ~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (401)
T PTZ00424 159 DMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTL 238 (401)
T ss_pred HHHHhCCcccccccEEEEecHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCccc
Confidence 99988877889999999999999999999888899999999899999999999988888887788887776655544444
Q ss_pred ccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCc
Q psy9399 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRI 320 (453)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 320 (453)
..+.+.+........+...+..+.......+++|||++++.++.+++.|...++.+..+||+++..+|..+++.|++|++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~ 318 (401)
T PTZ00424 239 EGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGST 318 (401)
T ss_pred CCceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 55666666555444455566666666666799999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHHHhhcCCC
Q psy9399 321 KILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIP 393 (453)
Q Consensus 321 ~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (453)
+|||||+++++|+|+|++++||+++.|.+..+|+||+||+||.|+.|.+++++.+.+...+..+++.+..++.
T Consensus 319 ~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~ 391 (401)
T PTZ00424 319 RVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIE 391 (401)
T ss_pred CEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998888876654
No 20
>KOG0343|consensus
Probab=100.00 E-value=3e-56 Score=410.53 Aligned_cols=367 Identities=34% Similarity=0.542 Sum_probs=325.4
Q ss_pred CCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhcccccc
Q psy9399 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNN 81 (453)
Q Consensus 2 ~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 81 (453)
-|++|+|+....+.|...+|..++.+|+.+|+..+.|++++-.|.||||||++|++|+++.+.+.+=.
T Consensus 70 kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs------------ 137 (758)
T KOG0343|consen 70 KFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWS------------ 137 (758)
T ss_pred hHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCC------------
Confidence 48999999999999999999999999999999999999999999999999999999999999885422
Q ss_pred ccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHH
Q psy9399 82 NKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLID 161 (453)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~ 161 (453)
...|..+|||.|||+|+.|+++.+.+.+..+. +.++.+.||.....+... -+...|+||||++|+.
T Consensus 138 ------------~~DGlGalIISPTRELA~QtFevL~kvgk~h~-fSaGLiiGG~~~k~E~eR-i~~mNILVCTPGRLLQ 203 (758)
T KOG0343|consen 138 ------------PTDGLGALIISPTRELALQTFEVLNKVGKHHD-FSAGLIIGGKDVKFELER-ISQMNILVCTPGRLLQ 203 (758)
T ss_pred ------------CCCCceeEEecchHHHHHHHHHHHHHHhhccc-cccceeecCchhHHHHHh-hhcCCeEEechHHHHH
Confidence 34567899999999999999999999998877 999999999886554433 4568999999999999
Q ss_pred HHhcCC-CCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecc--ccc
Q psy9399 162 HMNSGK-INFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNS--IEK 238 (453)
Q Consensus 162 ~l~~~~-~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~ 238 (453)
++.... +.-.++.++|+|||+++++++|...+..++..+|..+|++++|||.+..+.++++..+.+|..+.+-. ...
T Consensus 204 Hmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~a 283 (758)
T KOG0343|consen 204 HMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAA 283 (758)
T ss_pred HhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEecccccc
Confidence 997654 45688899999999999999999999999999999999999999999999999999999998887763 345
Q ss_pred ccccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhh--CCCceeecCCCCCHHHHHHHHHHHh
Q psy9399 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNI--SGFLAAPLHGDLHQNARNRTLENLR 316 (453)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~--~~~~~~~~~~~~~~~~r~~~~~~f~ 316 (453)
.+.++.|.++.+ +...+...+..++..+...++|||++|.+++..+++.+.. +|+++..+||.|++..|..+...|.
T Consensus 284 tP~~L~Q~y~~v-~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~ 362 (758)
T KOG0343|consen 284 TPSNLQQSYVIV-PLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFV 362 (758)
T ss_pred ChhhhhheEEEE-ehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHH
Confidence 556778888877 4567888888889989889999999999999999999986 6899999999999999999999999
Q ss_pred cCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhH-HHHHHHHHHhhcCCCcc
Q psy9399 317 RGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAER-MNIKKIERFTKQQIPIE 395 (453)
Q Consensus 317 ~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 395 (453)
....-||+||+++++|+|+|.|++||++|.|-++.+|+||+||++|.+..|.+++++.+.+. ..+..++ +..++.+
T Consensus 363 ~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq---~k~I~i~ 439 (758)
T KOG0343|consen 363 RKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQ---KKKIPIK 439 (758)
T ss_pred HhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHH---HcCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999874 4444443 3335554
Q ss_pred ccC
Q psy9399 396 VIN 398 (453)
Q Consensus 396 ~~~ 398 (453)
.+.
T Consensus 440 ~i~ 442 (758)
T KOG0343|consen 440 EIK 442 (758)
T ss_pred hhc
Confidence 443
No 21
>KOG0348|consensus
Probab=100.00 E-value=2.6e-56 Score=409.62 Aligned_cols=365 Identities=34% Similarity=0.520 Sum_probs=311.8
Q ss_pred CCCCCCCCCHHHHHHHHh-CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhcccc
Q psy9399 1 MNFKSIGLHELVLKALVK-VGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQ 79 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~ 79 (453)
++|.+|||++.+++.|++ +++..||.+|.++||.+++|+|++|.++||||||++|++|+++.+..-.....
T Consensus 136 ~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~-------- 207 (708)
T KOG0348|consen 136 AAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQ-------- 207 (708)
T ss_pred ccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCcccc--------
Confidence 479999999999999997 89999999999999999999999999999999999999999999887332211
Q ss_pred ccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHH
Q psy9399 80 NNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRL 159 (453)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l 159 (453)
+..|.-+||++||||||.|+++.+.++...+.++-.+.+.||+....+...+..++.|+|+||++|
T Consensus 208 --------------Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRL 273 (708)
T KOG0348|consen 208 --------------RSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRL 273 (708)
T ss_pred --------------ccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHH
Confidence 446779999999999999999999999888888888999999999988889999999999999999
Q ss_pred HHHHhc-CCCCCCCccEEEEechhhhcccCChHHHHHHHhhCC-------------CCccEEEEEeecChHHHHHHHhhc
Q psy9399 160 IDHMNS-GKINFSHLQILVLDEADRMLDMGFINDIEKIVDATP-------------VTRQTMLFSATLDGIVGNMAENIT 225 (453)
Q Consensus 160 ~~~l~~-~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~-------------~~~~~i~~SAT~~~~~~~~~~~~~ 225 (453)
.+++.+ +.+.+.++.++|+||+|++++.||...+..++.++. ...|.+++|||+++.+..+....+
T Consensus 274 vDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sL 353 (708)
T KOG0348|consen 274 VDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSL 353 (708)
T ss_pred HHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccc
Confidence 999986 456788999999999999999999999999988762 246899999999999999999999
Q ss_pred CCCeEEEecc-----c--------------------ccccccceEEEEEEcchhhHHHHHHH---HHhhCCCCcEEEEec
Q psy9399 226 KDPLILKVNS-----I--------------------EKKQKNITQSILFVDDILHKNRLLDY---LLRDKRVGQAVVFTA 277 (453)
Q Consensus 226 ~~~~~~~~~~-----~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~lvf~~ 277 (453)
.+|..+.... . ...+..+.+.+..+++..+-..+... ..+.....+++||+.
T Consensus 354 kDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S 433 (708)
T KOG0348|consen 354 KDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFS 433 (708)
T ss_pred cCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEe
Confidence 9998887221 0 01112344555566555444433333 334455679999999
Q ss_pred cchhHHHHHHHHhh----------------------CCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCC
Q psy9399 278 TKRDADIIADRLNI----------------------SGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDV 335 (453)
Q Consensus 278 ~~~~~~~l~~~L~~----------------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi 335 (453)
+.+.++.=+..|.+ .+.++..+||+|++++|..+++.|...+-.||+||+++++|+|+
T Consensus 434 ~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDl 513 (708)
T KOG0348|consen 434 CSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDL 513 (708)
T ss_pred chhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCC
Confidence 99999987777743 12458889999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHHH
Q psy9399 336 PAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERF 387 (453)
Q Consensus 336 ~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~ 387 (453)
|+|++||+||+|.+.++|+||+||+.|.|..|.+++|+.+.+.+++..++..
T Consensus 514 P~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 514 PHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred CCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999998887766554
No 22
>KOG0326|consensus
Probab=100.00 E-value=2.1e-57 Score=392.08 Aligned_cols=361 Identities=33% Similarity=0.580 Sum_probs=334.6
Q ss_pred CCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhcccccc
Q psy9399 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNN 81 (453)
Q Consensus 2 ~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 81 (453)
.||++.|..+++..+-+.||..|+|+|++++|.++.|++++..|..|+|||-+|.+|.++.+...+
T Consensus 86 efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~-------------- 151 (459)
T KOG0326|consen 86 EFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKK-------------- 151 (459)
T ss_pred cHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccc--------------
Confidence 599999999999999999999999999999999999999999999999999999999999887633
Q ss_pred ccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHH
Q psy9399 82 NKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLID 161 (453)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~ 161 (453)
..-++++++||++|+.|+.+...+++...+ +.+...+||....+....+....+++|+||+++++
T Consensus 152 --------------~~IQ~~ilVPtrelALQtSqvc~~lskh~~-i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlD 216 (459)
T KOG0326|consen 152 --------------NVIQAIILVPTRELALQTSQVCKELSKHLG-IKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILD 216 (459)
T ss_pred --------------cceeEEEEeecchhhHHHHHHHHHHhcccC-eEEEEecCCcccccceeeecCceEEEEcCChhHHH
Confidence 345899999999999999999999888777 99999999999888887788889999999999999
Q ss_pred HHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccccc
Q psy9399 162 HMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241 (453)
Q Consensus 162 ~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (453)
+...+-..++++.++|+||||.+++..|...+..++..+|+.+|+++.|||.|-.+..+....+.+|..+..- .+....
T Consensus 217 L~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM-~eLtl~ 295 (459)
T KOG0326|consen 217 LAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLM-EELTLK 295 (459)
T ss_pred HHhcccccchhceEEEechhhhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehh-hhhhhc
Confidence 9999888899999999999999999999999999999999999999999999999999999999999877653 334446
Q ss_pred cceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCcc
Q psy9399 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIK 321 (453)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 321 (453)
.+.+.+..+ .+..+..-+..+.....-.+++|||||...++.++..+.+.|+.|.++|++|.+++|.+++..|++|..+
T Consensus 296 GvtQyYafV-~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~cr 374 (459)
T KOG0326|consen 296 GVTQYYAFV-EERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCR 374 (459)
T ss_pred chhhheeee-chhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccc
Confidence 788888887 4567778888888887778999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHHHhhcCCC
Q psy9399 322 ILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIP 393 (453)
Q Consensus 322 vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (453)
.||||+.+.+|+|++.+++||+||+|+++++|+||+||+||.|..|.++-++...|+..+.+++.-++.++.
T Consensus 375 nLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~ 446 (459)
T KOG0326|consen 375 NLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIK 446 (459)
T ss_pred eeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999988887653
No 23
>KOG0346|consensus
Probab=100.00 E-value=6.4e-56 Score=398.17 Aligned_cols=367 Identities=33% Similarity=0.519 Sum_probs=322.3
Q ss_pred CCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhcccccc
Q psy9399 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNN 81 (453)
Q Consensus 2 ~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 81 (453)
+|+++||++.+.+++.++||..||-+|+.+||.+++|+|++..|.||||||.+|++|+++.+...+....
T Consensus 20 tFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~---------- 89 (569)
T KOG0346|consen 20 TFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTND---------- 89 (569)
T ss_pred cHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhccc----------
Confidence 7999999999999999999999999999999999999999999999999999999999999887553310
Q ss_pred ccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccC-CeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHH
Q psy9399 82 NKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMK-KIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160 (453)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~ 160 (453)
...++.++|++||++|+.|++..+.++..++. .++.+.+............+...++|+|+||+.+.
T Consensus 90 ------------~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll 157 (569)
T KOG0346|consen 90 ------------GEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLL 157 (569)
T ss_pred ------------ccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHH
Confidence 33577999999999999999999988766554 56666666566655555777788999999999999
Q ss_pred HHHhcCC-CCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEeccccc-
Q psy9399 161 DHMNSGK-INFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK- 238 (453)
Q Consensus 161 ~~l~~~~-~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~- 238 (453)
.++..+. .....+.++|+||||.++..||.+.+..+...+|...|.++||||+++.+..+.+.++.+|..+.....+.
T Consensus 158 ~~~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~ 237 (569)
T KOG0346|consen 158 RHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELP 237 (569)
T ss_pred HHHhhccchhhhheeeEEechhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCC
Confidence 9998877 56788999999999999999999999999999999999999999999999999999999999988876444
Q ss_pred ccccceEEEEEEcchhhHHHHHHHHHh-hCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhc
Q psy9399 239 KQKNITQSILFVDDILHKNRLLDYLLR-DKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRR 317 (453)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 317 (453)
.+..+.|..+.+. ...+..++..+++ ..-.+++|||+|+.+.|.++.-.|...|++.++++|.+|...|..++++|..
T Consensus 238 ~~dqL~Qy~v~cs-e~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNk 316 (569)
T KOG0346|consen 238 NPDQLTQYQVKCS-EEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNK 316 (569)
T ss_pred CcccceEEEEEec-cchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhC
Confidence 3456777777776 4555555555544 4456899999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCC-----------------------------------cccCCCCCCCcEEEEcCCCCChhHHHHHhhhccC
Q psy9399 318 GRIKILVATDV-----------------------------------AARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362 (453)
Q Consensus 318 g~~~vLv~T~~-----------------------------------~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R 362 (453)
|-++++|||+. +++|+|+.+|.+|++||+|.++..|+||+||++|
T Consensus 317 G~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaR 396 (569)
T KOG0346|consen 317 GLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTAR 396 (569)
T ss_pred cceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhcccccc
Confidence 99999999991 6789999999999999999999999999999999
Q ss_pred CCCCccEEEEeChhhHHHHHHHHHHhhcC
Q psy9399 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQ 391 (453)
Q Consensus 363 ~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 391 (453)
.++.|.++.|+.+.+......++.+...+
T Consensus 397 g~n~GtalSfv~P~e~~g~~~le~~~~d~ 425 (569)
T KOG0346|consen 397 GNNKGTALSFVSPKEEFGKESLESILKDE 425 (569)
T ss_pred CCCCCceEEEecchHHhhhhHHHHHHhhH
Confidence 99999999999999887666676665553
No 24
>KOG0335|consensus
Probab=100.00 E-value=9.9e-56 Score=409.90 Aligned_cols=370 Identities=41% Similarity=0.652 Sum_probs=332.2
Q ss_pred CCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhcccccc
Q psy9399 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNN 81 (453)
Q Consensus 2 ~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 81 (453)
+|+.-.+.+.+..+++..++..|+|+|+.++|.+..|++.++||+||||||.+||+|++..+.........
T Consensus 75 ~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~--------- 145 (482)
T KOG0335|consen 75 TFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRG--------- 145 (482)
T ss_pred cccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCc---------
Confidence 46666778889999999999999999999999999999999999999999999999999998875421100
Q ss_pred ccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHH
Q psy9399 82 NKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLID 161 (453)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~ 161 (453)
..-....++++|++||++|+.|++++.+++..... +++...+||.+...+.+...++++|+|+||++|.+
T Consensus 146 ---------~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~-~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d 215 (482)
T KOG0335|consen 146 ---------ESGGGVYPRALILAPTRELVDQIYNEARKFSYLSG-MKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKD 215 (482)
T ss_pred ---------ccCCCCCCceEEEeCcHHHhhHHHHHHHhhccccc-ceeeeeeCCcchhhhhhhhccCccEEEecCchhhh
Confidence 00011358999999999999999999999875554 89999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCccEEEEechhhhcc-cCChHHHHHHHhhCCC----CccEEEEEeecChHHHHHHHhhcCC-CeEEEecc
Q psy9399 162 HMNSGKINFSHLQILVLDEADRMLD-MGFINDIEKIVDATPV----TRQTMLFSATLDGIVGNMAENITKD-PLILKVNS 235 (453)
Q Consensus 162 ~l~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~~~~~~~~----~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~ 235 (453)
.++.+.+.+++++++|+|||++|+| .+|...++.++..... .+|.+++|||.+..+..+...+..+ ...+.+..
T Consensus 216 ~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~r 295 (482)
T KOG0335|consen 216 LIERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGR 295 (482)
T ss_pred hhhcceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEee
Confidence 9999999999999999999999999 9999999999987754 6799999999999999988888776 78888888
Q ss_pred cccccccceEEEEEEcchhhHHHHHHHHHhhC---CCC-----cEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHH
Q psy9399 236 IEKKQKNITQSILFVDDILHKNRLLDYLLRDK---RVG-----QAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNA 307 (453)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~-----~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 307 (453)
......++.+.+.++.....+..+++.+.... ..+ +++|||.+++.|..++.+|...++++..+||+.++.+
T Consensus 296 vg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~e 375 (482)
T KOG0335|consen 296 VGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIE 375 (482)
T ss_pred eccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhH
Confidence 88888999999999988888888887776543 233 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHHH
Q psy9399 308 RNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERF 387 (453)
Q Consensus 308 r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~ 387 (453)
|...++.|++|...+||||+++++|+|+|+|++||+||.|.+..+|+||+||+||.|..|.++.|++..+....+.+-+.
T Consensus 376 r~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~ 455 (482)
T KOG0335|consen 376 REQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEI 455 (482)
T ss_pred HHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888888888777
Q ss_pred hhc
Q psy9399 388 TKQ 390 (453)
Q Consensus 388 ~~~ 390 (453)
+.+
T Consensus 456 l~e 458 (482)
T KOG0335|consen 456 LTE 458 (482)
T ss_pred HHH
Confidence 654
No 25
>KOG0336|consensus
Probab=100.00 E-value=1.5e-54 Score=386.04 Aligned_cols=365 Identities=39% Similarity=0.630 Sum_probs=322.3
Q ss_pred CCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccch
Q psy9399 6 IGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIY 85 (453)
Q Consensus 6 l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (453)
+...+++.+++.+.||..|+|+|.+|||.+++|.+++..|.||+|||++||+|.+.++......
T Consensus 225 Fq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~---------------- 288 (629)
T KOG0336|consen 225 FQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKR---------------- 288 (629)
T ss_pred HhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchh----------------
Confidence 3456889999999999999999999999999999999999999999999999988766553221
Q ss_pred hhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhc
Q psy9399 86 THKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNS 165 (453)
Q Consensus 86 ~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~ 165 (453)
.-...++.+|++.||++|+.|+.-+..++. ...++.++++||....++...+.++.+|+++||++|.++...
T Consensus 289 ------~~qr~~p~~lvl~ptreLalqie~e~~kys--yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~ 360 (629)
T KOG0336|consen 289 ------REQRNGPGVLVLTPTRELALQIEGEVKKYS--YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMD 360 (629)
T ss_pred ------hhccCCCceEEEeccHHHHHHHHhHHhHhh--hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhc
Confidence 114567899999999999999988777764 235888999999999999999999999999999999999999
Q ss_pred CCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccc-cccce
Q psy9399 166 GKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK-QKNIT 244 (453)
Q Consensus 166 ~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 244 (453)
+..++..+.++|+|||++|++++|...++.++-..+..+|+++.|||.|+.+..+...++.+|..+.+...... ...+.
T Consensus 361 n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVk 440 (629)
T KOG0336|consen 361 NVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVK 440 (629)
T ss_pred CeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999888774433 24555
Q ss_pred EEEEEEcchhhHHHHHHHHHhh-CCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEE
Q psy9399 245 QSILFVDDILHKNRLLDYLLRD-KRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKIL 323 (453)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vL 323 (453)
|.+ .+.....+...+..+... ....+++|||.++..|+.+..-|.-.|+....+||+-.+.+|+..++.|++|+++||
T Consensus 441 Q~i-~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrIL 519 (629)
T KOG0336|consen 441 QNI-IVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRIL 519 (629)
T ss_pred eeE-EecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEE
Confidence 665 666677777777777665 566899999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHHH---hhcCCCcc
Q psy9399 324 VATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERF---TKQQIPIE 395 (453)
Q Consensus 324 v~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 395 (453)
|+|+++++|+|+|+++||++||+|.+.++|+||+||+||.|+.|.++.|+.-.|......+.+. .++++|.+
T Consensus 520 vaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevPde 594 (629)
T KOG0336|consen 520 VATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVPDE 594 (629)
T ss_pred EEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHH
Confidence 9999999999999999999999999999999999999999999999999998887766655443 34555544
No 26
>KOG0341|consensus
Probab=100.00 E-value=4.4e-54 Score=380.59 Aligned_cols=364 Identities=35% Similarity=0.588 Sum_probs=315.8
Q ss_pred CCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhcccccc
Q psy9399 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNN 81 (453)
Q Consensus 2 ~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 81 (453)
||.++.++..+++.|++.|+.+|||+|.+.+|.+++|++.+-.|-||||||++|.+|++..........|..
T Consensus 171 sF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~-------- 242 (610)
T KOG0341|consen 171 SFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFA-------- 242 (610)
T ss_pred hhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccc--------
Confidence 799999999999999999999999999999999999999999999999999999999887666544333321
Q ss_pred ccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhc-----ccCCeeEEEEECCCchHHHHHHhcCCCCEEEeCh
Q psy9399 82 NKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL-----YMKKIKAISILGGMPYLRQMQLLSRNPEILLATP 156 (453)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~ 156 (453)
...++-.||+||+++|+.|+.+.+..+.. ..+.+++..+.||.+..++......+.+|+|+||
T Consensus 243 ------------~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATP 310 (610)
T KOG0341|consen 243 ------------RGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATP 310 (610)
T ss_pred ------------cCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCc
Confidence 34678899999999999999888776643 2345788899999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEeccc
Q psy9399 157 GRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236 (453)
Q Consensus 157 ~~l~~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 236 (453)
++|.+.+..+...+.-++++.+||+++|.+.+|..+++.++..++.++|++++|||.|..++.+++..+-+|..+.+...
T Consensus 311 GRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRA 390 (610)
T KOG0341|consen 311 GRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRA 390 (610)
T ss_pred chHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccc
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999998888775
Q ss_pred ccccccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHh
Q psy9399 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLR 316 (453)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 316 (453)
....-++.+....+........++..+-+ ...++||||..+.+++.+.++|--.|..+..+||+-++++|...++.|+
T Consensus 391 GAAsldViQevEyVkqEaKiVylLeCLQK--T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr 468 (610)
T KOG0341|consen 391 GAASLDVIQEVEYVKQEAKIVYLLECLQK--TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFR 468 (610)
T ss_pred cccchhHHHHHHHHHhhhhhhhHHHHhcc--CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHh
Confidence 55544444443333222233333444433 3368999999999999999999999999999999999999999999999
Q ss_pred cCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHH-HHHHHHHH
Q psy9399 317 RGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERM-NIKKIERF 387 (453)
Q Consensus 317 ~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~-~~~~~~~~ 387 (453)
.|+-+|||+|++++.|+|+|++.+||+||.|...+.|+||+||+||.|+.|.+.+|+...... .+..++.+
T Consensus 469 ~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~L 540 (610)
T KOG0341|consen 469 AGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHL 540 (610)
T ss_pred cCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999876443 33444443
No 27
>KOG0347|consensus
Probab=100.00 E-value=1.9e-53 Score=391.93 Aligned_cols=373 Identities=34% Similarity=0.548 Sum_probs=298.2
Q ss_pred CCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhcccccc
Q psy9399 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISG-RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNN 81 (453)
Q Consensus 3 ~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~-~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 81 (453)
|..|+++.+++.+|..+||..|+++|...+|++..| .|++-.|.||||||++|-+|+++.+....+....
T Consensus 183 W~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e--------- 253 (731)
T KOG0347|consen 183 WKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQE--------- 253 (731)
T ss_pred HhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhh---------
Confidence 888999999999999999999999999999999998 6899999999999999999999976653321110
Q ss_pred ccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHH
Q psy9399 82 NKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLID 161 (453)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~ 161 (453)
..+ .+.....+-+||++|||+|+.|+.+.+.......+ +.+..++||.....+.+.+...++|+|+||++|+.
T Consensus 254 ---~~~---~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~-i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlwe 326 (731)
T KOG0347|consen 254 ---LSN---TSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQ-IRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWE 326 (731)
T ss_pred ---hhh---HHhccCcceeEEecChHHHHHHHHHHHHHhccccC-eEEEEeechhHHHHHHHHHhcCCCEEEecchHHHH
Confidence 000 11112222599999999999999999999887665 99999999999999999999999999999999999
Q ss_pred HHhcCCC---CCCCccEEEEechhhhcccCChHHHHHHHhhCC-----CCccEEEEEeecChHH----------------
Q psy9399 162 HMNSGKI---NFSHLQILVLDEADRMLDMGFINDIEKIVDATP-----VTRQTMLFSATLDGIV---------------- 217 (453)
Q Consensus 162 ~l~~~~~---~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~-----~~~~~i~~SAT~~~~~---------------- 217 (453)
++..... .|..+.++|+||+|+|...+++..+..++..+. ..+|.+.+|||++...
T Consensus 327 li~e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~ 406 (731)
T KOG0347|consen 327 LIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDE 406 (731)
T ss_pred HHHhhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhh
Confidence 9987654 467889999999999999999999999888765 4569999999996321
Q ss_pred -----HHHHHh--hcCCCeEEEecccccccccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHh
Q psy9399 218 -----GNMAEN--ITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLN 290 (453)
Q Consensus 218 -----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~ 290 (453)
+.+.+. +.++|.++...+.......+....+.++... +.-.+..++.. -.+++|||||+.+.+.+++-.|+
T Consensus 407 ~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~e-KD~ylyYfl~r-yPGrTlVF~NsId~vKRLt~~L~ 484 (731)
T KOG0347|consen 407 LNAKIQHLMKKIGFRGKPKIIDLTPQSATASTLTESLIECPPLE-KDLYLYYFLTR-YPGRTLVFCNSIDCVKRLTVLLN 484 (731)
T ss_pred hhHHHHHHHHHhCccCCCeeEecCcchhHHHHHHHHhhcCCccc-cceeEEEEEee-cCCceEEEechHHHHHHHHHHHh
Confidence 122221 2334455544433222222222222221111 11111111111 23799999999999999999999
Q ss_pred hCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEE
Q psy9399 291 ISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAV 370 (453)
Q Consensus 291 ~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~ 370 (453)
..+++...+|+.|.++.|.+.+++|++....|||||+++++|+|||+|.|||||..|.+.+-|+||.||++|.+..|..+
T Consensus 485 ~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsv 564 (731)
T KOG0347|consen 485 NLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSV 564 (731)
T ss_pred hcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeChhhHHHHHHHHHHhhcCCC
Q psy9399 371 SLVNHAERMNIKKIERFTKQQIP 393 (453)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~ 393 (453)
.++.+.+...+..+..-++....
T Consensus 565 ml~~P~e~~~~~KL~ktL~k~~d 587 (731)
T KOG0347|consen 565 MLCGPQEVGPLKKLCKTLKKKED 587 (731)
T ss_pred EEeChHHhHHHHHHHHHHhhccC
Confidence 99999998777777776665433
No 28
>KOG0339|consensus
Probab=100.00 E-value=3.2e-51 Score=373.74 Aligned_cols=361 Identities=38% Similarity=0.590 Sum_probs=333.1
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQN 80 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 80 (453)
++|+..|+++.+..++.+..+..|+++|.+++|..+.+++++-.|-||||||-+|+.|.+.++.....-
T Consensus 223 tsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL----------- 291 (731)
T KOG0339|consen 223 TSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPEL----------- 291 (731)
T ss_pred chhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhh-----------
Confidence 689999999999999999999999999999999999999999999999999999999998876653211
Q ss_pred cccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHH
Q psy9399 81 NNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~ 160 (453)
....++-.||+|||++|+.|+..+.++|++..+ ++++.++||....++...+..++.|+||||++|.
T Consensus 292 ------------~~g~gPi~vilvPTrela~Qi~~eaKkf~K~yg-l~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRli 358 (731)
T KOG0339|consen 292 ------------KPGEGPIGVILVPTRELASQIFSEAKKFGKAYG-LRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLI 358 (731)
T ss_pred ------------cCCCCCeEEEEeccHHHHHHHHHHHHHhhhhcc-ceEEEeecCCcHHHHHHhhhcCCeEEEechHHHH
Confidence 135678999999999999999999999988776 9999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEeccccccc
Q psy9399 161 DHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240 (453)
Q Consensus 161 ~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (453)
+++..+..++.++.++||||+++|.+.+|...++.|....+..+|.+++|||.+..++.++..++.+|..+.........
T Consensus 359 d~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean 438 (731)
T KOG0339|consen 359 DMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEAN 438 (731)
T ss_pred HHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888766666
Q ss_pred ccceEEEEEEcchhhHHH-HHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCC
Q psy9399 241 KNITQSILFVDDILHKNR-LLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGR 319 (453)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 319 (453)
..+.|.+..+.....+.. ++..|......+++|+|+.-+..+++++..|.-.++.|..+||+|.+.+|.+++..|+.+.
T Consensus 439 ~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~ 518 (731)
T KOG0339|consen 439 EDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKR 518 (731)
T ss_pred cchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcC
Confidence 889998888877766655 4566666677789999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHH
Q psy9399 320 IKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIE 385 (453)
Q Consensus 320 ~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~ 385 (453)
..|||+|++..+|+|+|.+..||++|...+.+.+.||+||+||.|..|.+++++.+.|....-.+-
T Consensus 519 ~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LV 584 (731)
T KOG0339|consen 519 KPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLV 584 (731)
T ss_pred CceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHH
Confidence 999999999999999999999999999999999999999999999999999999999877554443
No 29
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=4.1e-50 Score=410.47 Aligned_cols=350 Identities=20% Similarity=0.283 Sum_probs=273.2
Q ss_pred CCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchh
Q psy9399 7 GLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYT 86 (453)
Q Consensus 7 ~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (453)
.+++.+.++|.+.||..|+++|+++++.+++|+|+++.+|||||||++|++|+++.+...
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~-------------------- 79 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD-------------------- 79 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC--------------------
Confidence 478999999999999999999999999999999999999999999999999999987652
Q ss_pred hhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcC
Q psy9399 87 HKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSG 166 (453)
Q Consensus 87 ~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~ 166 (453)
.+.++||++||++|+.|+.+.+.++. ...+++..+.|+... .+...+..+++|+|+||++|...+...
T Consensus 80 ---------~~~~aL~l~PtraLa~q~~~~l~~l~--~~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~ 147 (742)
T TIGR03817 80 ---------PRATALYLAPTKALAADQLRAVRELT--LRGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPS 147 (742)
T ss_pred ---------CCcEEEEEcChHHHHHHHHHHHHHhc--cCCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccc
Confidence 24589999999999999999999986 224777777776664 444555667899999999986543221
Q ss_pred C----CCCCCccEEEEechhhhcccCChHHHHHHH-------hhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecc
Q psy9399 167 K----INFSHLQILVLDEADRMLDMGFINDIEKIV-------DATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNS 235 (453)
Q Consensus 167 ~----~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~-------~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 235 (453)
. ..++++++||+||+|.+.+. |+..+..++ ...+...|++++|||+++... ....+.+.+..+. ..
T Consensus 148 ~~~~~~~l~~l~~vViDEah~~~g~-fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i-~~ 224 (742)
T TIGR03817 148 HARWARFLRRLRYVVIDECHSYRGV-FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVAV-TE 224 (742)
T ss_pred hhHHHHHHhcCCEEEEeChhhccCc-cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEEE-CC
Confidence 1 23688999999999998763 555444333 334567899999999988755 4555666664432 21
Q ss_pred cccccccceEEEEEEcc----------------hhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhC-------
Q psy9399 236 IEKKQKNITQSILFVDD----------------ILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNIS------- 292 (453)
Q Consensus 236 ~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~------- 292 (453)
.... ..........+. ...+..++..++.. +.++||||+|++.++.+++.|+..
T Consensus 225 ~~~~-~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~ 301 (742)
T TIGR03817 225 DGSP-RGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPD 301 (742)
T ss_pred CCCC-cCceEEEEecCCccccccccccccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccc
Confidence 1111 111111111111 12344455555553 479999999999999999998753
Q ss_pred -CCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEE
Q psy9399 293 -GFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVS 371 (453)
Q Consensus 293 -~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~ 371 (453)
+..+..+||++++++|.++++.|++|++++||||+++++|||+|++++||+++.|.+..+|+||+||+||.|+.|.+++
T Consensus 302 l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~ 381 (742)
T TIGR03817 302 LAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVL 381 (742)
T ss_pred cccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEE
Confidence 5678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeC--hhhHHHHHHHHHHhhcCCCc
Q psy9399 372 LVN--HAERMNIKKIERFTKQQIPI 394 (453)
Q Consensus 372 ~~~--~~~~~~~~~~~~~~~~~~~~ 394 (453)
+.. +.|...+..++++++.+++.
T Consensus 382 v~~~~~~d~~~~~~~~~~~~~~~e~ 406 (742)
T TIGR03817 382 VARDDPLDTYLVHHPEALFDRPVEA 406 (742)
T ss_pred EeCCChHHHHHHhCHHHHhcCCCcc
Confidence 886 45666677777777765543
No 30
>KOG0332|consensus
Probab=100.00 E-value=1e-50 Score=357.70 Aligned_cols=363 Identities=34% Similarity=0.530 Sum_probs=322.2
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISG--RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLN 78 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~ 78 (453)
.||++|+|.+++.+.+-.++|+.|+.+|+.++|.++.. ++.+..+..|+|||.+|.+.++.+..-
T Consensus 90 ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~------------- 156 (477)
T KOG0332|consen 90 KSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDP------------- 156 (477)
T ss_pred ccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCc-------------
Confidence 48999999999999999999999999999999999976 679999999999999999999987654
Q ss_pred cccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHH
Q psy9399 79 QNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGR 158 (453)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~ 158 (453)
.-..++++.|+|+++|+.|+.+.+.+.+++. .++.....-+....+- ..-..+|+|+||+.
T Consensus 157 ---------------~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~-~ita~yair~sk~~rG---~~i~eqIviGTPGt 217 (477)
T KOG0332|consen 157 ---------------DVVVPQCICLAPTRELAPQTGEVVEEMGKFT-ELTASYAIRGSKAKRG---NKLTEQIVIGTPGT 217 (477)
T ss_pred ---------------cccCCCceeeCchHHHHHHHHHHHHHhcCce-eeeEEEEecCcccccC---CcchhheeeCCCcc
Confidence 3346688889999999999999999999887 3776665555422111 11135899999999
Q ss_pred HHHHHhc-CCCCCCCccEEEEechhhhccc-CChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEeccc
Q psy9399 159 LIDHMNS-GKINFSHLQILVLDEADRMLDM-GFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236 (453)
Q Consensus 159 l~~~l~~-~~~~~~~~~~iIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 236 (453)
+.+++.. +-+.+..+.++|+|||+.|.+. ||.+.-..+...+|...|++++|||..+.+..++.....++..+.....
T Consensus 218 v~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~e 297 (477)
T KOG0332|consen 218 VLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKRE 297 (477)
T ss_pred HHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehh
Confidence 9998887 6677889999999999999865 5888888899999999999999999999999999999999999999888
Q ss_pred ccccccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHh
Q psy9399 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLR 316 (453)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 316 (453)
......+.+.+..+.....+..++..+.....-++.+|||.++..|..++..|.+.|+.|..+||+|...+|..+++.|+
T Consensus 298 el~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr 377 (477)
T KOG0332|consen 298 ELALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFR 377 (477)
T ss_pred hccccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHh
Confidence 88889999999999999999999988888777789999999999999999999999999999999999999999999999
Q ss_pred cCCccEEEEeCCcccCCCCCCCcEEEEcCCCC------ChhHHHHHhhhccCCCCCccEEEEeChhhHH-HHHHHHHHhh
Q psy9399 317 RGRIKILVATDVAARGIDVPAITHVFNYDLPK------FPEDYVHRIGRTGRAGRNGFAVSLVNHAERM-NIKKIERFTK 389 (453)
Q Consensus 317 ~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~------~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~-~~~~~~~~~~ 389 (453)
+|...|||+|+++++|+|++.+++||+||+|. +.+.|+||+||+||.|+.|.++-+++..+.. .+..|+++++
T Consensus 378 ~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~ 457 (477)
T KOG0332|consen 378 EGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFN 457 (477)
T ss_pred cCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHh
Confidence 99999999999999999999999999999984 6889999999999999999999998876654 5568999988
Q ss_pred cCCCcc
Q psy9399 390 QQIPIE 395 (453)
Q Consensus 390 ~~~~~~ 395 (453)
+.+...
T Consensus 458 ~~i~~~ 463 (477)
T KOG0332|consen 458 MKIKRL 463 (477)
T ss_pred hcceec
Confidence 776544
No 31
>KOG0327|consensus
Probab=100.00 E-value=1.4e-50 Score=359.73 Aligned_cols=360 Identities=37% Similarity=0.624 Sum_probs=329.6
Q ss_pred CCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhcccccc
Q psy9399 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNN 81 (453)
Q Consensus 2 ~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 81 (453)
||++++|.+.+++.+-..||..|+.+|+.|+..+..|.|+.+.+++|+|||.+|.+++++.+.-
T Consensus 27 sfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~---------------- 90 (397)
T KOG0327|consen 27 SFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM---------------- 90 (397)
T ss_pred hhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc----------------
Confidence 7999999999999999999999999999999999999999999999999999999999998754
Q ss_pred ccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHH-hcCCCCEEEeChHHHH
Q psy9399 82 NKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQL-LSRNPEILLATPGRLI 160 (453)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Ilv~T~~~l~ 160 (453)
......++++.|+++|+.|..+....++...+ +++..+.||.....+... ....++|+++||++++
T Consensus 91 ------------~~ke~qalilaPtreLa~qi~~v~~~lg~~~~-~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~ 157 (397)
T KOG0327|consen 91 ------------SVKETQALILAPTRELAQQIQKVVRALGDHMD-VSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVF 157 (397)
T ss_pred ------------chHHHHHHHhcchHHHHHHHHHHHHhhhcccc-eeeeeecCcccchhhhhhhhccCceeecCCchhHH
Confidence 22355899999999999999988888887665 888888888887755444 4446899999999999
Q ss_pred HHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEeccccccc
Q psy9399 161 DHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240 (453)
Q Consensus 161 ~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (453)
+.+....+..+.+.+.|+||++.++..+|.+.+..++..+|...|++++|||.+.++....+.+..+|..+.........
T Consensus 158 dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl 237 (397)
T KOG0327|consen 158 DMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTL 237 (397)
T ss_pred HhhccccccccceeEEeecchHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhh
Confidence 99988887788899999999999999999999999999999999999999999999999999999999999998877777
Q ss_pred ccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCc
Q psy9399 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRI 320 (453)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 320 (453)
..+.+.+..+.... +...+..+.+ .-.+.++|||+++.+..+...|...++.+..+||+|.+.+|..++..|+.|+.
T Consensus 238 ~gikq~~i~v~k~~-k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gss 314 (397)
T KOG0327|consen 238 EGIKQFYINVEKEE-KLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSS 314 (397)
T ss_pred hheeeeeeeccccc-cccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCc
Confidence 88888888886655 7777777777 45789999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHHHhhcCCC
Q psy9399 321 KILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIP 393 (453)
Q Consensus 321 ~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (453)
+|||+|+.+++|+|+..+..||+++.|.....|.||+||+||.|.+|.++.++.+.+...++.+++|+.-.+.
T Consensus 315 rvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~ 387 (397)
T KOG0327|consen 315 RVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIE 387 (397)
T ss_pred eEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcce
Confidence 9999999999999999999999999999999999999999999999999999999999999999999886543
No 32
>KOG0334|consensus
Probab=100.00 E-value=8.5e-49 Score=388.48 Aligned_cols=364 Identities=37% Similarity=0.590 Sum_probs=326.0
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQN 80 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 80 (453)
++|...|++..++..++++|+..|+++|.+|||+|+.|+++|..|-||||||++|++|++.++......
T Consensus 365 ~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~----------- 433 (997)
T KOG0334|consen 365 TSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPL----------- 433 (997)
T ss_pred chHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCCh-----------
Confidence 589999999999999999999999999999999999999999999999999999999999655432211
Q ss_pred cccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHH
Q psy9399 81 NNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~ 160 (453)
. ...++.++|++||++|+.|+.++++.|....+ +.++.++||....++...+..++.|+||||+++.
T Consensus 434 -----------~-~gdGPi~li~aPtrela~QI~r~~~kf~k~l~-ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmi 500 (997)
T KOG0334|consen 434 -----------E-EGDGPIALILAPTRELAMQIHREVRKFLKLLG-IRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMI 500 (997)
T ss_pred -----------h-hCCCceEEEEcCCHHHHHHHHHHHHHHHhhcC-ceEEEecCCccHHHHHHHHhcCCceEEeccchhh
Confidence 1 33488999999999999999999999988755 9999999999999999999999999999999999
Q ss_pred HHHhcCCCC---CCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccc
Q psy9399 161 DHMNSGKIN---FSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237 (453)
Q Consensus 161 ~~l~~~~~~---~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (453)
+.+-.+... ++++.++|+||+|+|.+.+|...+..++..++..+|++++|||.+..+..++...+..|..+.+....
T Consensus 501 D~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~s 580 (997)
T KOG0334|consen 501 DILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRS 580 (997)
T ss_pred hhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccce
Confidence 988766544 45556999999999999999999999999999999999999999999999999998899887777766
Q ss_pred cccccceEEEEEEcchhhHHHH-HHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHh
Q psy9399 238 KKQKNITQSILFVDDILHKNRL-LDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLR 316 (453)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 316 (453)
.....+.+.+........+..- +..+-.....++++|||...+.|..+.+.|.+.|++|..+||+.++.+|...++.|+
T Consensus 581 vV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK 660 (997)
T KOG0334|consen 581 VVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFK 660 (997)
T ss_pred eEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHh
Confidence 6667888888888745555544 444444566789999999999999999999999999999999999999999999999
Q ss_pred cCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHHHh
Q psy9399 317 RGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFT 388 (453)
Q Consensus 317 ~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~ 388 (453)
+|...+||+|+++++|+|++.+.+||+||.|...++|+||.||+||.|..|.+++|..+.+..+...|.+++
T Consensus 661 ~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al 732 (997)
T KOG0334|consen 661 NGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKAL 732 (997)
T ss_pred ccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998777777776665
No 33
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=7.1e-48 Score=379.28 Aligned_cols=323 Identities=23% Similarity=0.322 Sum_probs=247.5
Q ss_pred hCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCC
Q psy9399 18 KVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ 97 (453)
Q Consensus 18 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (453)
.+|+..|+|+|+++++++++++++++.+|||+|||++|++|++.. +
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~----------------------------------~ 51 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS----------------------------------D 51 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc----------------------------------C
Confidence 389999999999999999999999999999999999999998753 3
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHH----HhcCCCCEEEeChHHHHHHH-hcCCC-CCC
Q psy9399 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQ----LLSRNPEILLATPGRLIDHM-NSGKI-NFS 171 (453)
Q Consensus 98 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Ilv~T~~~l~~~l-~~~~~-~~~ 171 (453)
+.+||++|+++|+.|+.+.+..++ +.+..+.++....+... ......+|+++||+.+.... ....+ ...
T Consensus 52 ~~~lVi~P~~~L~~dq~~~l~~~g-----i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~ 126 (470)
T TIGR00614 52 GITLVISPLISLMEDQVLQLKASG-----IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERK 126 (470)
T ss_pred CcEEEEecHHHHHHHHHHHHHHcC-----CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcC
Confidence 378999999999999988887654 66666766665443221 22346799999999875322 11111 357
Q ss_pred CccEEEEechhhhcccC--ChHHHHH---HHhhCCCCccEEEEEeecChHHHHHHHhh--cCCCeEEEecccccccccce
Q psy9399 172 HLQILVLDEADRMLDMG--FINDIEK---IVDATPVTRQTMLFSATLDGIVGNMAENI--TKDPLILKVNSIEKKQKNIT 244 (453)
Q Consensus 172 ~~~~iIiDE~h~~~~~~--~~~~~~~---~~~~~~~~~~~i~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 244 (453)
++++|||||||.+++|+ |...+.. +...++ ..+++++|||+++......... ..++....... ..+++.
T Consensus 127 ~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~---~r~nl~ 202 (470)
T TIGR00614 127 GITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFP-NVPIMALTATASPSVREDILRQLNLKNPQIFCTSF---DRPNLY 202 (470)
T ss_pred CcCEEEEeCCcccCccccccHHHHHHHHHHHHHcC-CCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCC---CCCCcE
Confidence 89999999999999887 4444333 344443 5679999999988665433322 23343333221 112332
Q ss_pred EEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEE
Q psy9399 245 QSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILV 324 (453)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv 324 (453)
...... .......+...+.....+..+||||++++.++.+++.|+..|+.+..+||+|++++|..+++.|++|+++|||
T Consensus 203 ~~v~~~-~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLV 281 (470)
T TIGR00614 203 YEVRRK-TPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVV 281 (470)
T ss_pred EEEEeC-CccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEE
Confidence 222211 1122233444444455556779999999999999999999999999999999999999999999999999999
Q ss_pred EeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHH
Q psy9399 325 ATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKI 384 (453)
Q Consensus 325 ~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~ 384 (453)
||+++++|+|+|++++||++++|.+...|+||+||+||.|..|.++++++..|...++.+
T Consensus 282 aT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~ 341 (470)
T TIGR00614 282 ATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRL 341 (470)
T ss_pred EechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998876655544
No 34
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.4e-47 Score=389.39 Aligned_cols=337 Identities=23% Similarity=0.310 Sum_probs=255.5
Q ss_pred CCCCCCC--CHHHHHHHHh-CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccc
Q psy9399 2 NFKSIGL--HELVLKALVK-VGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLN 78 (453)
Q Consensus 2 ~~~~l~l--~~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~ 78 (453)
.|.+.++ +..+...++. +|+..|++.|.++|++++.|+++++.+|||+|||++|++|++..
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~---------------- 499 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC---------------- 499 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc----------------
Confidence 3554333 4556666766 89999999999999999999999999999999999999999853
Q ss_pred cccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhc------CCCCEE
Q psy9399 79 QNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLS------RNPEIL 152 (453)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~Il 152 (453)
.+.+|||+|+++|+.++...+... .+.+..+.++....+....+. ..++|+
T Consensus 500 ------------------~GiTLVISPLiSLmqDQV~~L~~~-----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~IL 556 (1195)
T PLN03137 500 ------------------PGITLVISPLVSLIQDQIMNLLQA-----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLL 556 (1195)
T ss_pred ------------------CCcEEEEeCHHHHHHHHHHHHHhC-----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEE
Confidence 347999999999998665555543 377888888887665544332 467999
Q ss_pred EeChHHHHH--HHhcC--CC-CCCCccEEEEechhhhcccC--ChHHHHH---HHhhCCCCccEEEEEeecChHHHHHHH
Q psy9399 153 LATPGRLID--HMNSG--KI-NFSHLQILVLDEADRMLDMG--FINDIEK---IVDATPVTRQTMLFSATLDGIVGNMAE 222 (453)
Q Consensus 153 v~T~~~l~~--~l~~~--~~-~~~~~~~iIiDE~h~~~~~~--~~~~~~~---~~~~~~~~~~~i~~SAT~~~~~~~~~~ 222 (453)
++||++|.. .+... .+ ....+.+|||||||++++|+ |...+.. +...+ ...+++++|||++..+.....
T Consensus 557 yvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~f-p~vPilALTATAT~~V~eDI~ 635 (1195)
T PLN03137 557 YVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKF-PNIPVLALTATATASVKEDVV 635 (1195)
T ss_pred EEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHhC-CCCCeEEEEecCCHHHHHHHH
Confidence 999999752 11111 11 12458899999999999987 5555544 33334 356899999999987665443
Q ss_pred hhcC--CCeEEEecccccccccceEEEEEEcchhhHHHHHHHHHh-hCCCCcEEEEeccchhHHHHHHHHhhCCCceeec
Q psy9399 223 NITK--DPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLR-DKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299 (453)
Q Consensus 223 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~ 299 (453)
..+. .+..+... ...+++... ...........+..++. ...++..||||++++.++.+++.|...|+.+..+
T Consensus 636 ~~L~l~~~~vfr~S---f~RpNL~y~--Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~Y 710 (1195)
T PLN03137 636 QALGLVNCVVFRQS---FNRPNLWYS--VVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFY 710 (1195)
T ss_pred HHcCCCCcEEeecc---cCccceEEE--EeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeee
Confidence 3332 22222211 112233222 22222222233333443 3445688999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHH
Q psy9399 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERM 379 (453)
Q Consensus 300 ~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 379 (453)
||+|++.+|..+++.|.+|+++|||||+++++|||+|++++||++++|.+.+.|.|++|||||.|..|.|+++++..|..
T Consensus 711 HAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~ 790 (1195)
T PLN03137 711 HGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYI 790 (1195)
T ss_pred eCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887765
Q ss_pred HHHH
Q psy9399 380 NIKK 383 (453)
Q Consensus 380 ~~~~ 383 (453)
..+.
T Consensus 791 ~~~~ 794 (1195)
T PLN03137 791 RVKH 794 (1195)
T ss_pred HHHH
Confidence 4443
No 35
>KOG0337|consensus
Probab=100.00 E-value=2.4e-49 Score=354.17 Aligned_cols=362 Identities=36% Similarity=0.557 Sum_probs=327.0
Q ss_pred CCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhcccccc
Q psy9399 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNN 81 (453)
Q Consensus 2 ~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 81 (453)
+|.++||+..+.+++.+.||..|+|+|++.+|.++++++++-.+-||||||.+|++|+++.+....
T Consensus 22 ~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-------------- 87 (529)
T KOG0337|consen 22 GFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-------------- 87 (529)
T ss_pred CccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc--------------
Confidence 799999999999999999999999999999999999999999999999999999999999988743
Q ss_pred ccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHH
Q psy9399 82 NKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLID 161 (453)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~ 161 (453)
..+.+++++.||++|+.|..+.+++++.... ++++.++||....+++..+..++||+++||+++.+
T Consensus 88 -------------~~g~RalilsptreLa~qtlkvvkdlgrgt~-lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h 153 (529)
T KOG0337|consen 88 -------------QTGLRALILSPTRELALQTLKVVKDLGRGTK-LRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLH 153 (529)
T ss_pred -------------ccccceeeccCcHHHHHHHHHHHHHhccccc-hhhhhhcccchHHHHHHHhccCCCEEEecCceeee
Confidence 2366999999999999999999999998877 99999999999999999999999999999999988
Q ss_pred HHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccccc
Q psy9399 162 HMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241 (453)
Q Consensus 162 ~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (453)
..-.-.+.++.+.+|||||++++..++|.+.+..++..++...|.+++|||+|..+-.+.+..+.+|..+.........+
T Consensus 154 ~~vem~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise 233 (529)
T KOG0337|consen 154 LGVEMTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISE 233 (529)
T ss_pred eehheeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcch
Confidence 76655677899999999999999999999999999999999999999999999999999999999999988766555555
Q ss_pred cceEEEEEEcchhhHHHHHHHHHhh-CCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCc
Q psy9399 242 NITQSILFVDDILHKNRLLDYLLRD-KRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRI 320 (453)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 320 (453)
.....+..+.+. .+...+..++.. -...+++||+.+..+++.+...|+..|+.+..+.|.|++..|..-+..|+.++.
T Consensus 234 ~lk~~f~~~~~a-~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~ 312 (529)
T KOG0337|consen 234 LLKVRFFRVRKA-EKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKT 312 (529)
T ss_pred hhhhheeeeccH-HHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCcc
Confidence 666666666444 444444444443 334689999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHHHhhcCC
Q psy9399 321 KILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQI 392 (453)
Q Consensus 321 ~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (453)
.+||.|+++++|+|+|-.+.||++|.|.+...|+||+||+.|.|..|++|.++.+.+..++-.+..++...+
T Consensus 313 ~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~ 384 (529)
T KOG0337|consen 313 SILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPL 384 (529)
T ss_pred ceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCce
Confidence 999999999999999999999999999999999999999999999999999999999998888888877654
No 36
>KOG4284|consensus
Probab=100.00 E-value=8.8e-49 Score=367.06 Aligned_cols=348 Identities=32% Similarity=0.509 Sum_probs=317.8
Q ss_pred CCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhcccccc
Q psy9399 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNN 81 (453)
Q Consensus 2 ~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 81 (453)
.|+.|-|..+++..|...+|..|+++|..|||+++.+-|.+|.|..|+|||++|...+++.+..
T Consensus 26 ~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~---------------- 89 (980)
T KOG4284|consen 26 GFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS---------------- 89 (980)
T ss_pred CHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc----------------
Confidence 5888889999999999999999999999999999999999999999999999998888887765
Q ss_pred ccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHH
Q psy9399 82 NKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLID 161 (453)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~ 161 (453)
.......+|++|||+++.|+.+.+.+++..+.+++|..+.||.........+ +.++|+|+||+++..
T Consensus 90 ------------~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl-k~~rIvIGtPGRi~q 156 (980)
T KOG4284|consen 90 ------------RSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL-KQTRIVIGTPGRIAQ 156 (980)
T ss_pred ------------ccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhh-hhceEEecCchHHHH
Confidence 4456789999999999999999999999888889999999998876655444 457899999999999
Q ss_pred HHhcCCCCCCCccEEEEechhhhcc-cCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEeccccccc
Q psy9399 162 HMNSGKINFSHLQILVLDEADRMLD-MGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240 (453)
Q Consensus 162 ~l~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (453)
+++.+.+++.+++++|+||||.+.+ ..|...+..++..+|..+|++++|||.+..+......++.+|..+.........
T Consensus 157 L~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L 236 (980)
T KOG4284|consen 157 LVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQL 236 (980)
T ss_pred HHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCcee
Confidence 9999999999999999999999998 568999999999999999999999999999999999999999999998877777
Q ss_pred ccceEEEEEEcchh-------hHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHH
Q psy9399 241 KNITQSILFVDDIL-------HKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLE 313 (453)
Q Consensus 241 ~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 313 (453)
-.+.|.++...... .+...+..+...-+-.+.||||+....|+-++..|...|+.|-.++|.|++.+|..+++
T Consensus 237 ~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~ 316 (980)
T KOG4284|consen 237 FGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVD 316 (980)
T ss_pred echhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHH
Confidence 78888888775543 24456666777777789999999999999999999999999999999999999999999
Q ss_pred HHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhH
Q psy9399 314 NLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAER 378 (453)
Q Consensus 314 ~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 378 (453)
.+++-..+|||+|+..++|||-+++++||+.|+|.+...|.||+|||||.|..|.+++++.....
T Consensus 317 ~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 317 QLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred HhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 99999999999999999999999999999999999999999999999999999999999876544
No 37
>KOG0350|consensus
Probab=100.00 E-value=7.8e-48 Score=351.39 Aligned_cols=360 Identities=30% Similarity=0.488 Sum_probs=287.6
Q ss_pred CCCCCCCHHHHHH----------HHhCCCCCCcHHHHHHHHHHh---------cCCcEEEEcCCCchHHHHHHHHHHHhh
Q psy9399 3 FKSIGLHELVLKA----------LVKVGYTKPTGVQEQAIPAAI---------SGRDLIVSSQTGSGKTAAFMLPALHKF 63 (453)
Q Consensus 3 ~~~l~l~~~~~~~----------l~~~~~~~~~~~Q~~~~~~~~---------~~~~~lv~a~TGsGKT~~~l~~~~~~l 63 (453)
|+.+++++.+... +.++++.+..|+|..+++.++ ..+|+.|.||||||||++|.+|+++.+
T Consensus 129 ~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L 208 (620)
T KOG0350|consen 129 FSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLL 208 (620)
T ss_pred eeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHH
Confidence 5667776665444 888999999999999999985 246899999999999999999999998
Q ss_pred hhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHH
Q psy9399 64 ASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQ 143 (453)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (453)
.++.. ...++|||+|+++|+.|+++.|.++....+ +.++.+.|......+..
T Consensus 209 ~~R~v---------------------------~~LRavVivPtr~L~~QV~~~f~~~~~~tg-L~V~~~sgq~sl~~E~~ 260 (620)
T KOG0350|consen 209 SSRPV---------------------------KRLRAVVIVPTRELALQVYDTFKRLNSGTG-LAVCSLSGQNSLEDEAR 260 (620)
T ss_pred ccCCc---------------------------cceEEEEEeeHHHHHHHHHHHHHHhccCCc-eEEEecccccchHHHHH
Confidence 87432 235999999999999999999999987776 88999999888888777
Q ss_pred HhcC-C----CCEEEeChHHHHHHHh-cCCCCCCCccEEEEechhhhcccCChHHHHHHHhhC-----------------
Q psy9399 144 LLSR-N----PEILLATPGRLIDHMN-SGKINFSHLQILVLDEADRMLDMGFINDIEKIVDAT----------------- 200 (453)
Q Consensus 144 ~~~~-~----~~Ilv~T~~~l~~~l~-~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~----------------- 200 (453)
.+.+ . .||+|+||++|.+++. .+.+.+++++++||||+|++++..|..-+..+...+
T Consensus 261 qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~ 340 (620)
T KOG0350|consen 261 QLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQ 340 (620)
T ss_pred HHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcc
Confidence 7655 2 3899999999999998 466789999999999999998765433322222211
Q ss_pred -----------------CCCccEEEEEeecChHHHHHHHhhcCCCeEEEecc----cccccccceEEEEEEcchhhHHHH
Q psy9399 201 -----------------PVTRQTMLFSATLDGIVGNMAENITKDPLILKVNS----IEKKQKNITQSILFVDDILHKNRL 259 (453)
Q Consensus 201 -----------------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 259 (453)
..+.+.+.+|||++.....+...-+..|....+.. ....+..+.+..+.. +...+.-.
T Consensus 341 ~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~-~~~~kpl~ 419 (620)
T KOG0350|consen 341 APQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVT-EPKFKPLA 419 (620)
T ss_pred cCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeec-ccccchHh
Confidence 12235788899988777777777777775554442 111222333333333 33344455
Q ss_pred HHHHHhhCCCCcEEEEeccchhHHHHHHHHh----hCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCC
Q psy9399 260 LDYLLRDKRVGQAVVFTATKRDADIIADRLN----ISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDV 335 (453)
Q Consensus 260 ~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi 335 (453)
+..++......++|+|+++.+.+.+++..|+ ....++-.+.|.++.+.|.+.++.|..|+++||||++++++|+|+
T Consensus 420 ~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv 499 (620)
T KOG0350|consen 420 VYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDV 499 (620)
T ss_pred HHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcc
Confidence 6667777777899999999999999999997 245666779999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHHHhhcC
Q psy9399 336 PAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQ 391 (453)
Q Consensus 336 ~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 391 (453)
.++++||+||+|.+...|+||+||++|.|+.|.++.+.+..+...+..+-+-.+..
T Consensus 500 ~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~~ 555 (620)
T KOG0350|consen 500 NDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNLW 555 (620)
T ss_pred cccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999998887776665544443
No 38
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=2e-46 Score=378.16 Aligned_cols=331 Identities=25% Similarity=0.373 Sum_probs=253.1
Q ss_pred CCCCHHHHHHHHh-CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccc
Q psy9399 6 IGLHELVLKALVK-VGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKI 84 (453)
Q Consensus 6 l~l~~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (453)
+.+.+...+.|++ +|+..|+++|+++++++++++++++.+|||+|||++|++|++..
T Consensus 7 ~~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~---------------------- 64 (607)
T PRK11057 7 LNLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL---------------------- 64 (607)
T ss_pred CCchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc----------------------
Confidence 3444555666766 89999999999999999999999999999999999999998853
Q ss_pred hhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHH----HhcCCCCEEEeChHHHH
Q psy9399 85 YTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQ----LLSRNPEILLATPGRLI 160 (453)
Q Consensus 85 ~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Ilv~T~~~l~ 160 (453)
.+.+||++|+++|+.|+.+.+..++ +....+.++........ ......+++++||+++.
T Consensus 65 ------------~g~tlVisPl~sL~~dqv~~l~~~g-----i~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~ 127 (607)
T PRK11057 65 ------------DGLTLVVSPLISLMKDQVDQLLANG-----VAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLM 127 (607)
T ss_pred ------------CCCEEEEecHHHHHHHHHHHHHHcC-----CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhc
Confidence 3378999999999999998888754 55666666655444322 22345789999999986
Q ss_pred HHHhcCCCCCCCccEEEEechhhhcccC--ChHHH---HHHHhhCCCCccEEEEEeecChHHHHH-HHhh-cCCCeEEEe
Q psy9399 161 DHMNSGKINFSHLQILVLDEADRMLDMG--FINDI---EKIVDATPVTRQTMLFSATLDGIVGNM-AENI-TKDPLILKV 233 (453)
Q Consensus 161 ~~l~~~~~~~~~~~~iIiDE~h~~~~~~--~~~~~---~~~~~~~~~~~~~i~~SAT~~~~~~~~-~~~~-~~~~~~~~~ 233 (453)
.......+...++++|||||||.+++|+ |...+ ..+...++ ..+++++|||+++..... ...+ +.+|....
T Consensus 128 ~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p-~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~- 205 (607)
T PRK11057 128 MDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQI- 205 (607)
T ss_pred ChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCC-CCcEEEEecCCChhHHHHHHHHhCCCCeEEEE-
Confidence 4322222334578999999999999877 44333 33344443 568999999998765443 3322 23333322
Q ss_pred cccccccccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHH
Q psy9399 234 NSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLE 313 (453)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 313 (453)
... ..+++... .... ......+..++....++++||||+++++++.+++.|+..++.+..+||+|++.+|..+++
T Consensus 206 ~~~--~r~nl~~~--v~~~-~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~ 280 (607)
T PRK11057 206 SSF--DRPNIRYT--LVEK-FKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQE 280 (607)
T ss_pred CCC--CCCcceee--eeec-cchHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHH
Confidence 221 11222222 1212 122233344455566689999999999999999999999999999999999999999999
Q ss_pred HHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHH
Q psy9399 314 NLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIK 382 (453)
Q Consensus 314 ~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~ 382 (453)
.|++|+++|||||+++++|+|+|++++||+++.|.+..+|.|++||+||.|.+|.++++++..|...++
T Consensus 281 ~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~ 349 (607)
T PRK11057 281 AFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR 349 (607)
T ss_pred HHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988765443
No 39
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=7.2e-47 Score=390.96 Aligned_cols=337 Identities=23% Similarity=0.265 Sum_probs=257.8
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHH-HhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhcccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPA-AISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQ 79 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~ 79 (453)
+.|++++|++.+.+.+.+.|+.+|+|+|.++++. +.++++++++||||||||++|.++++..+..
T Consensus 1 ~~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~-------------- 66 (737)
T PRK02362 1 MKIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR-------------- 66 (737)
T ss_pred CChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc--------------
Confidence 5799999999999999999999999999999998 7788999999999999999999999988753
Q ss_pred ccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHH
Q psy9399 80 NNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRL 159 (453)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l 159 (453)
+.++||++|+++|+.|+.+.+.++... ++++..++|+...... ....++|+|+||+++
T Consensus 67 -----------------~~kal~i~P~raLa~q~~~~~~~~~~~--g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~ 124 (737)
T PRK02362 67 -----------------GGKALYIVPLRALASEKFEEFERFEEL--GVRVGISTGDYDSRDE---WLGDNDIIVATSEKV 124 (737)
T ss_pred -----------------CCcEEEEeChHHHHHHHHHHHHHhhcC--CCEEEEEeCCcCcccc---ccCCCCEEEECHHHH
Confidence 458999999999999999999887532 4788888887654332 234579999999999
Q ss_pred HHHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhC---CCCccEEEEEeecChHHHHHHHhhcCCC-------e
Q psy9399 160 IDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDAT---PVTRQTMLFSATLDGIVGNMAENITKDP-------L 229 (453)
Q Consensus 160 ~~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~---~~~~~~i~~SAT~~~~~~~~~~~~~~~~-------~ 229 (453)
..++.+....+++++++|+||+|.+.+.+++..++.++..+ ....|++++|||+++. ..+..+..... .
T Consensus 125 ~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~wl~~~~~~~~~rpv 203 (737)
T PRK02362 125 DSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELADWLDAELVDSEWRPI 203 (737)
T ss_pred HHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHHHhCCCcccCCCCCC
Confidence 88887765567899999999999999888887777665543 4567999999999763 33444332221 1
Q ss_pred EEEec--cc-ccccccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCC-------------
Q psy9399 230 ILKVN--SI-EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISG------------- 293 (453)
Q Consensus 230 ~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~------------- 293 (453)
.+... .. ...... .+..............+...+ ..++++||||++++.|+.+++.|....
T Consensus 204 ~l~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~ 280 (737)
T PRK02362 204 DLREGVFYGGAIHFDD-SQREVEVPSKDDTLNLVLDTL--EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELA 280 (737)
T ss_pred CCeeeEecCCeecccc-ccccCCCccchHHHHHHHHHH--HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHH
Confidence 10000 00 000000 000000001111112222222 355799999999999999888875421
Q ss_pred -----------------------CceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEE----cC-
Q psy9399 294 -----------------------FLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFN----YD- 345 (453)
Q Consensus 294 -----------------------~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~----~~- 345 (453)
..++++|++|++.+|..+++.|++|.++|||||+++++|+|+|..++||. ||
T Consensus 281 ~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~ 360 (737)
T PRK02362 281 ELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDG 360 (737)
T ss_pred HHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecC
Confidence 25789999999999999999999999999999999999999999999986 55
Q ss_pred ----CCCChhHHHHHhhhccCCCCC--ccEEEEeChhh
Q psy9399 346 ----LPKFPEDYVHRIGRTGRAGRN--GFAVSLVNHAE 377 (453)
Q Consensus 346 ----~~~~~~~~~Q~~GR~~R~g~~--g~~~~~~~~~~ 377 (453)
.|.+..+|.||+|||||.|.+ |.+++++...+
T Consensus 361 ~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 361 GAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYD 398 (737)
T ss_pred CCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCch
Confidence 578899999999999999876 88999987653
No 40
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=7.2e-46 Score=375.58 Aligned_cols=323 Identities=24% Similarity=0.384 Sum_probs=251.9
Q ss_pred HHHHh-CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcc
Q psy9399 14 KALVK-VGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLR 92 (453)
Q Consensus 14 ~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (453)
+.|++ +|+.+|+++|+++++++++|+++++++|||+|||++|++|++..
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------------------------------ 52 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------------------------------ 52 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------------------------------
Confidence 34555 89999999999999999999999999999999999999998742
Q ss_pred cCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHH----HhcCCCCEEEeChHHHHHHHhcCCC
Q psy9399 93 FKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQ----LLSRNPEILLATPGRLIDHMNSGKI 168 (453)
Q Consensus 93 ~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Ilv~T~~~l~~~l~~~~~ 168 (453)
++.++|++|+++|+.|+.+.+..++ +.+..+.++....+... ...+..+|+++||+++.........
T Consensus 53 ----~g~~lVisPl~sL~~dq~~~l~~~g-----i~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l 123 (591)
T TIGR01389 53 ----KGLTVVISPLISLMKDQVDQLRAAG-----VAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNML 123 (591)
T ss_pred ----CCcEEEEcCCHHHHHHHHHHHHHcC-----CcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHH
Confidence 3368999999999999988888754 66777777766554332 2335679999999998654433334
Q ss_pred CCCCccEEEEechhhhcccC--ChHHHH---HHHhhCCCCccEEEEEeecChHHHHHHHhhcC--CCeEEEecccccccc
Q psy9399 169 NFSHLQILVLDEADRMLDMG--FINDIE---KIVDATPVTRQTMLFSATLDGIVGNMAENITK--DPLILKVNSIEKKQK 241 (453)
Q Consensus 169 ~~~~~~~iIiDE~h~~~~~~--~~~~~~---~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 241 (453)
...++++|||||+|.+++|+ |...+. .+...++.. +++++|||++..........+. ++..+.. . ...+
T Consensus 124 ~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~-~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~-~--~~r~ 199 (591)
T TIGR01389 124 QRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQV-PRIALTATADAETRQDIRELLRLADANEFIT-S--FDRP 199 (591)
T ss_pred hcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCC-CEEEEEeCCCHHHHHHHHHHcCCCCCCeEec-C--CCCC
Confidence 56789999999999999876 444433 334445443 4999999998776654443332 2322221 1 1112
Q ss_pred cceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCcc
Q psy9399 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIK 321 (453)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 321 (453)
++.... ... ..+...+..++....+.++||||++++.++.+++.|...++.+..+||+|+.++|..+++.|.+|+++
T Consensus 200 nl~~~v--~~~-~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~ 276 (591)
T TIGR01389 200 NLRFSV--VKK-NNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVK 276 (591)
T ss_pred CcEEEE--EeC-CCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCc
Confidence 232222 222 23344444555555568999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHH
Q psy9399 322 ILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIK 382 (453)
Q Consensus 322 vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~ 382 (453)
|||||+++++|+|+|++++||++++|.+...|.|++||+||.|..+.++++++..|....+
T Consensus 277 vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~ 337 (591)
T TIGR01389 277 VMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLK 337 (591)
T ss_pred EEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998887755443
No 41
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.6e-45 Score=380.11 Aligned_cols=339 Identities=20% Similarity=0.252 Sum_probs=258.9
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHH-HhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhcccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPA-AISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQ 79 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~ 79 (453)
++|+++++++.+.+.+...|+..|+++|.++++. +.+++++++++|||||||++|.+|++..+..
T Consensus 1 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~-------------- 66 (720)
T PRK00254 1 MKVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR-------------- 66 (720)
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh--------------
Confidence 5799999999999999999999999999999986 7889999999999999999999999987654
Q ss_pred ccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHH
Q psy9399 80 NNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRL 159 (453)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l 159 (453)
.+.++||++|+++|+.|+.+.+..+.. . ++++..++|+...... ....++|+|+||+++
T Consensus 67 ----------------~~~~~l~l~P~~aLa~q~~~~~~~~~~-~-g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~ 125 (720)
T PRK00254 67 ----------------EGGKAVYLVPLKALAEEKYREFKDWEK-L-GLRVAMTTGDYDSTDE---WLGKYDIIIATAEKF 125 (720)
T ss_pred ----------------cCCeEEEEeChHHHHHHHHHHHHHHhh-c-CCEEEEEeCCCCCchh---hhccCCEEEEcHHHH
Confidence 145899999999999999998887643 2 4788888887664332 234679999999999
Q ss_pred HHHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccc
Q psy9399 160 IDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239 (453)
Q Consensus 160 ~~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (453)
..++......++++++||+||+|.+.+.+++..+..++..++...|++++|||+++. ..+..++..........+.+..
T Consensus 126 ~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~n~-~~la~wl~~~~~~~~~rpv~l~ 204 (720)
T PRK00254 126 DSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHMLGRAQILGLSATVGNA-EELAEWLNAELVVSDWRPVKLR 204 (720)
T ss_pred HHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHHhcCcCCcEEEEEccCCCH-HHHHHHhCCccccCCCCCCcce
Confidence 888876666688999999999999998888999999999888889999999999763 4555544322110000000000
Q ss_pred cccceEEEEEEcch------hhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhC---------------------
Q psy9399 240 QKNITQSILFVDDI------LHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNIS--------------------- 292 (453)
Q Consensus 240 ~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~--------------------- 292 (453)
.....+........ ......+...+. .++++||||+|++.|+.++..|...
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 282 (720)
T PRK00254 205 KGVFYQGFLFWEDGKIERFPNSWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLE 282 (720)
T ss_pred eeEecCCeeeccCcchhcchHHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHh
Confidence 00000111111111 111222333333 3578999999999998877666320
Q ss_pred ------------CCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEE-------cCCC-CChhH
Q psy9399 293 ------------GFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFN-------YDLP-KFPED 352 (453)
Q Consensus 293 ------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~-------~~~~-~~~~~ 352 (453)
...++.+|++|++++|..+++.|++|.++|||||+++++|+|+|.+++||. ++.+ .+..+
T Consensus 283 ~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~ 362 (720)
T PRK00254 283 ENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLE 362 (720)
T ss_pred cCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHH
Confidence 124889999999999999999999999999999999999999999999984 3332 35679
Q ss_pred HHHHhhhccCCC--CCccEEEEeChhh
Q psy9399 353 YVHRIGRTGRAG--RNGFAVSLVNHAE 377 (453)
Q Consensus 353 ~~Q~~GR~~R~g--~~g~~~~~~~~~~ 377 (453)
|.||+|||||.| ..|.+++++...+
T Consensus 363 ~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 363 IQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred HHHhhhccCCCCcCCCceEEEEecCcc
Confidence 999999999976 4489999987644
No 42
>KOG0344|consensus
Probab=100.00 E-value=7.6e-46 Score=346.24 Aligned_cols=361 Identities=31% Similarity=0.476 Sum_probs=307.5
Q ss_pred CCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccch
Q psy9399 6 IGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIY 85 (453)
Q Consensus 6 l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (453)
.+.++.++.++...+|..|++.|.+|+|.++.+++++.|||||+|||++|.+|++.++......
T Consensus 141 ~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~---------------- 204 (593)
T KOG0344|consen 141 YSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQE---------------- 204 (593)
T ss_pred hhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcc----------------
Confidence 4567788999999999999999999999999999999999999999999999999988764310
Q ss_pred hhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHh--cccCCeeEEEEECCCchHHH-HHHhcCCCCEEEeChHHHHHH
Q psy9399 86 THKERLRFKPAQPRMLVLTPTRELALQVTAATERYG--LYMKKIKAISILGGMPYLRQ-MQLLSRNPEILLATPGRLIDH 162 (453)
Q Consensus 86 ~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Ilv~T~~~l~~~ 162 (453)
....+-+++|+.|+++|+.|++.+..++. .... ...+........... .......++|+++||.++...
T Consensus 205 -------~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~-~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~ 276 (593)
T KOG0344|consen 205 -------KHKVGLRALILSPTRELAAQIYREMRKYSIDEGTS-LRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGL 276 (593)
T ss_pred -------cCccceEEEEecchHHHHHHHHHHHHhcCCCCCCc-hhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHH
Confidence 02356799999999999999999999987 3222 222222222111111 111122568999999999999
Q ss_pred HhcCC--CCCCCccEEEEechhhhccc-CChHHHHHHHhhCCCC-ccEEEEEeecChHHHHHHHhhcCCCeEEEeccccc
Q psy9399 163 MNSGK--INFSHLQILVLDEADRMLDM-GFINDIEKIVDATPVT-RQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238 (453)
Q Consensus 163 l~~~~--~~~~~~~~iIiDE~h~~~~~-~~~~~~~~~~~~~~~~-~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (453)
+..+. +.+..+.++|+||++++.+. .|...+..++.++... ..+-++|||.+..++.++.....++..+.+.....
T Consensus 277 ~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~s 356 (593)
T KOG0344|consen 277 LGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNS 356 (593)
T ss_pred hcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchh
Confidence 88876 56899999999999999998 8888999998877553 46778899999999999998888888888877666
Q ss_pred ccccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHH-hhCCCceeecCCCCCHHHHHHHHHHHhc
Q psy9399 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRL-NISGFLAAPLHGDLHQNARNRTLENLRR 317 (453)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 317 (453)
....+.|.+..+.....+.-.+..++...-..++|||+.+.+.|..++..| --.++++.++||+.++.+|.+.+++|+.
T Consensus 357 a~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~ 436 (593)
T KOG0344|consen 357 ANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRI 436 (593)
T ss_pred HhhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhc
Confidence 667888899999888888888888998888889999999999999999999 5678999999999999999999999999
Q ss_pred CCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHHHhhc
Q psy9399 318 GRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQ 390 (453)
Q Consensus 318 g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 390 (453)
|++.||+||+++++|+|+.+++.||++|.|.+..+|+||+||+||.|+.|.+++|+.+.+-.+++.+.....+
T Consensus 437 g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~ 509 (593)
T KOG0344|consen 437 GKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQ 509 (593)
T ss_pred cCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998888877665544
No 43
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=3.9e-44 Score=373.71 Aligned_cols=343 Identities=22% Similarity=0.252 Sum_probs=247.9
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhh
Q psy9399 8 LHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTH 87 (453)
Q Consensus 8 l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (453)
+++.+.+.+.+ +|..|+++|+++++.++++++++++||||||||++|++|++..+.......
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~----------------- 79 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREG----------------- 79 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhcccc-----------------
Confidence 46666677665 788999999999999999999999999999999999999998876421100
Q ss_pred hhhcccCCCCceEEEEcCcHHHHHHHHHHHHH-------H----hcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeCh
Q psy9399 88 KERLRFKPAQPRMLVLTPTRELALQVTAATER-------Y----GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATP 156 (453)
Q Consensus 88 ~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~-------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~ 156 (453)
....+.++||++|+++|+.|+.+.+.. + +...+.+.+...+|+.......+.+...++|+||||
T Consensus 80 -----~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTP 154 (876)
T PRK13767 80 -----ELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTP 154 (876)
T ss_pred -----CCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecH
Confidence 012356899999999999998775542 1 122325788889999888777777777899999999
Q ss_pred HHHHHHHhcCCC--CCCCccEEEEechhhhcccCChHHHH----HHHhhCCCCccEEEEEeecChHHHHHHHhhcCC---
Q psy9399 157 GRLIDHMNSGKI--NFSHLQILVLDEADRMLDMGFINDIE----KIVDATPVTRQTMLFSATLDGIVGNMAENITKD--- 227 (453)
Q Consensus 157 ~~l~~~l~~~~~--~~~~~~~iIiDE~h~~~~~~~~~~~~----~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~--- 227 (453)
++|..++..... .+.++++||+||+|.+.+..++..+. .+....+...|++++|||+++. .....+....
T Consensus 155 E~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~~L~~~~~~ 233 (876)
T PRK13767 155 ESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAKFLVGYEDD 233 (876)
T ss_pred HHHHHHhcChhHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHHHhcCcccc
Confidence 999877654432 36889999999999999776554443 3334444677999999999762 3333333221
Q ss_pred ----CeEEEecccccccccceEE-----EEEEcchhhHHHHHHHHHhh-CCCCcEEEEeccchhHHHHHHHHhhC-----
Q psy9399 228 ----PLILKVNSIEKKQKNITQS-----ILFVDDILHKNRLLDYLLRD-KRVGQAVVFTATKRDADIIADRLNIS----- 292 (453)
Q Consensus 228 ----~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~-~~~~~~lvf~~~~~~~~~l~~~L~~~----- 292 (453)
+..+........ ..+... ............+...+... ..++++||||||+..|+.++..|...
T Consensus 234 ~~~r~~~iv~~~~~k~-~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~ 312 (876)
T PRK13767 234 GEPRDCEIVDARFVKP-FDIKVISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEY 312 (876)
T ss_pred CCCCceEEEccCCCcc-ceEEEeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhc
Confidence 111111100000 000000 00001111111222222221 23468999999999999999999862
Q ss_pred -CCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCC-CCccEE
Q psy9399 293 -GFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAG-RNGFAV 370 (453)
Q Consensus 293 -~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g-~~g~~~ 370 (453)
+..+..+||++++++|..+++.|++|+++|||||+++++|+|+|++++||+++.|.+..+|+||+||+||.+ ..+..+
T Consensus 313 ~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ 392 (876)
T PRK13767 313 DEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGR 392 (876)
T ss_pred cccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEE
Confidence 467899999999999999999999999999999999999999999999999999999999999999999974 334444
Q ss_pred EEeCh
Q psy9399 371 SLVNH 375 (453)
Q Consensus 371 ~~~~~ 375 (453)
++...
T Consensus 393 ii~~~ 397 (876)
T PRK13767 393 IIVVD 397 (876)
T ss_pred EEEcC
Confidence 44443
No 44
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=8.2e-44 Score=365.96 Aligned_cols=342 Identities=19% Similarity=0.257 Sum_probs=252.9
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQN 80 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 80 (453)
+.|++++|++.+.+.+...++. ++++|.++++.+.++++++++||||||||+++.++++..+..
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~--------------- 64 (674)
T PRK01172 1 MKISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA--------------- 64 (674)
T ss_pred CcHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh---------------
Confidence 5789999999999999999996 999999999999999999999999999999999999887654
Q ss_pred cccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHH
Q psy9399 81 NNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~ 160 (453)
+.+++|++|+++|+.|+++.+.++.. . +..+...+|+...... ....++|+|+||+++.
T Consensus 65 ----------------~~k~v~i~P~raLa~q~~~~~~~l~~-~-g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~ 123 (674)
T PRK01172 65 ----------------GLKSIYIVPLRSLAMEKYEELSRLRS-L-GMRVKISIGDYDDPPD---FIKRYDVVILTSEKAD 123 (674)
T ss_pred ----------------CCcEEEEechHHHHHHHHHHHHHHhh-c-CCeEEEEeCCCCCChh---hhccCCEEEECHHHHH
Confidence 34899999999999999999987642 2 3677777776553322 1246799999999998
Q ss_pred HHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhh---CCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccc
Q psy9399 161 DHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDA---TPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237 (453)
Q Consensus 161 ~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~---~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (453)
..+.+....+.+++++|+||+|.+.+.+++..+..++.. .+...|+|++|||+++. ..+..++..... .....+
T Consensus 124 ~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~wl~~~~~--~~~~r~ 200 (674)
T PRK01172 124 SLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQWLNASLI--KSNFRP 200 (674)
T ss_pred HHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHHHhCCCcc--CCCCCC
Confidence 888776666889999999999999888777777766543 45678999999999763 444444322211 100000
Q ss_pred cccccceEEE-----EEEcchh-hHHHHHHHHHh-hCCCCcEEEEeccchhHHHHHHHHhhC------------------
Q psy9399 238 KKQKNITQSI-----LFVDDIL-HKNRLLDYLLR-DKRVGQAVVFTATKRDADIIADRLNIS------------------ 292 (453)
Q Consensus 238 ~~~~~~~~~~-----~~~~~~~-~~~~~~~~l~~-~~~~~~~lvf~~~~~~~~~l~~~L~~~------------------ 292 (453)
..+.... ...+... ........+.. ...++++||||++++.++.+++.|...
T Consensus 201 ---vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~ 277 (674)
T PRK01172 201 ---VPLKLGILYRKRLILDGYERSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYD 277 (674)
T ss_pred ---CCeEEEEEecCeeeecccccccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhccccccccccccccc
Confidence 0011000 0011111 11111111221 234679999999999999999888642
Q ss_pred -------CCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCC---------CCChhHHHHH
Q psy9399 293 -------GFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDL---------PKFPEDYVHR 356 (453)
Q Consensus 293 -------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~---------~~~~~~~~Q~ 356 (453)
...+..+||+|++++|..+++.|++|.++|||||+++++|+|+|...+|| .+. |.+..+|.||
T Consensus 278 ~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm 356 (674)
T PRK01172 278 DSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQM 356 (674)
T ss_pred HHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHH
Confidence 02378899999999999999999999999999999999999999865444 332 4578899999
Q ss_pred hhhccCCCCC--ccEEEEeChhhHHHHHHHHHHh
Q psy9399 357 IGRTGRAGRN--GFAVSLVNHAERMNIKKIERFT 388 (453)
Q Consensus 357 ~GR~~R~g~~--g~~~~~~~~~~~~~~~~~~~~~ 388 (453)
+|||||.|.+ |.+++++...+. ...+++++
T Consensus 357 ~GRAGR~g~d~~g~~~i~~~~~~~--~~~~~~~l 388 (674)
T PRK01172 357 IGRAGRPGYDQYGIGYIYAASPAS--YDAAKKYL 388 (674)
T ss_pred hhcCCCCCCCCcceEEEEecCccc--HHHHHHHH
Confidence 9999999854 678888765432 22345555
No 45
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=1e-42 Score=359.06 Aligned_cols=321 Identities=21% Similarity=0.214 Sum_probs=246.6
Q ss_pred CCHHHHHHHHh-CCCCCCcHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccc
Q psy9399 8 LHELVLKALVK-VGYTKPTGVQEQAIPAAISG------RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQN 80 (453)
Q Consensus 8 l~~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~------~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 80 (453)
.+......+.. +++ +||+.|.++++.++++ .+.+++||||+|||.+|+.+++..+..
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~--------------- 499 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD--------------- 499 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---------------
Confidence 44555555554 788 5999999999999875 579999999999999999999887654
Q ss_pred cccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHH---h-cCCCCEEEeCh
Q psy9399 81 NNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQL---L-SRNPEILLATP 156 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~Ilv~T~ 156 (453)
+.+++|++||++|+.|+++.+.++....+ +++..++++....+.... + .+.++|+|+||
T Consensus 500 ----------------g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~-i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp 562 (926)
T TIGR00580 500 ----------------GKQVAVLVPTTLLAQQHFETFKERFANFP-VTIELLSRFRSAKEQNEILKELASGKIDILIGTH 562 (926)
T ss_pred ----------------CCeEEEEeCcHHHHHHHHHHHHHHhccCC-cEEEEEeccccHHHHHHHHHHHHcCCceEEEchH
Confidence 45899999999999999999998776554 778888877664443322 2 23689999999
Q ss_pred HHHHHHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEeccc
Q psy9399 157 GRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236 (453)
Q Consensus 157 ~~l~~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 236 (453)
..+ .+...+++++++|+||+|++. ......+..++...+++++|||+.+....+......++..+...+.
T Consensus 563 ~ll-----~~~v~f~~L~llVIDEahrfg-----v~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~ 632 (926)
T TIGR00580 563 KLL-----QKDVKFKDLGLLIIDEEQRFG-----VKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPE 632 (926)
T ss_pred HHh-----hCCCCcccCCEEEeecccccc-----hhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCC
Confidence 533 234568999999999999853 2334455566777899999999876554444444455555544332
Q ss_pred ccccccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhh--CCCceeecCCCCCHHHHHHHHHH
Q psy9399 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNI--SGFLAAPLHGDLHQNARNRTLEN 314 (453)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~--~~~~~~~~~~~~~~~~r~~~~~~ 314 (453)
. ...+...+........+..+...+ ..+++++||||+++.++.+++.|+. .+.++..+||+|++.+|.+++++
T Consensus 633 ~--R~~V~t~v~~~~~~~i~~~i~~el---~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~ 707 (926)
T TIGR00580 633 D--RLPVRTFVMEYDPELVREAIRREL---LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLE 707 (926)
T ss_pred C--ccceEEEEEecCHHHHHHHHHHHH---HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHH
Confidence 2 122333333222211111222222 3457999999999999999999987 47889999999999999999999
Q ss_pred HhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCC-ChhHHHHHhhhccCCCCCccEEEEeChh
Q psy9399 315 LRRGRIKILVATDVAARGIDVPAITHVFNYDLPK-FPEDYVHRIGRTGRAGRNGFAVSLVNHA 376 (453)
Q Consensus 315 f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~-~~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 376 (453)
|++|+.+|||||+++++|+|+|++++||+++.+. +..+|.|++||+||.|+.|.|++++++.
T Consensus 708 F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 708 FYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred HHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 9999999999999999999999999999999864 6779999999999999999999998653
No 46
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=4.5e-42 Score=361.74 Aligned_cols=319 Identities=22% Similarity=0.226 Sum_probs=249.5
Q ss_pred HHHHHHHHhCCCCCCcHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhcccccccc
Q psy9399 10 ELVLKALVKVGYTKPTGVQEQAIPAAISG------RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNK 83 (453)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~------~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 83 (453)
.+..+....++| +||+.|.++++.++++ .+.+++|+||+|||.+++.++...+..
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~------------------ 648 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN------------------ 648 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc------------------
Confidence 344556677899 6999999999999986 689999999999999998887765433
Q ss_pred chhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhc----CCCCEEEeChHHH
Q psy9399 84 IYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLS----RNPEILLATPGRL 159 (453)
Q Consensus 84 ~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l 159 (453)
+.+++|++||++|+.|+++.+.+.....+ +++..++++....++...+. ..++|+|+||+.+
T Consensus 649 -------------g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~-v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL 714 (1147)
T PRK10689 649 -------------HKQVAVLVPTTLLAQQHYDNFRDRFANWP-VRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL 714 (1147)
T ss_pred -------------CCeEEEEeCcHHHHHHHHHHHHHhhccCC-ceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH
Confidence 56899999999999999999988665443 77777888777665544332 4689999999744
Q ss_pred HHHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccc
Q psy9399 160 IDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239 (453)
Q Consensus 160 ~~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (453)
. ....+.+++++|+||+|++. + .....+..++...|++++|||+.+....+......++..+......
T Consensus 715 ~-----~~v~~~~L~lLVIDEahrfG---~--~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~-- 782 (1147)
T PRK10689 715 Q-----SDVKWKDLGLLIVDEEHRFG---V--RHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR-- 782 (1147)
T ss_pred h-----CCCCHhhCCEEEEechhhcc---h--hHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC--
Confidence 2 34467899999999999972 2 1234456677888999999998876666666666777766553322
Q ss_pred cccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhC--CCceeecCCCCCHHHHHHHHHHHhc
Q psy9399 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNIS--GFLAAPLHGDLHQNARNRTLENLRR 317 (453)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~ 317 (453)
...+............+..++..+ ..+++++||||+++.++.+++.|.+. +..+..+||+|++.+|.+++..|++
T Consensus 783 r~~v~~~~~~~~~~~~k~~il~el---~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~ 859 (1147)
T PRK10689 783 RLAVKTFVREYDSLVVREAILREI---LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH 859 (1147)
T ss_pred CCCceEEEEecCcHHHHHHHHHHH---hcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHh
Confidence 123333333333222333333443 34579999999999999999999876 7789999999999999999999999
Q ss_pred CCccEEEEeCCcccCCCCCCCcEEEEcCCC-CChhHHHHHhhhccCCCCCccEEEEeChh
Q psy9399 318 GRIKILVATDVAARGIDVPAITHVFNYDLP-KFPEDYVHRIGRTGRAGRNGFAVSLVNHA 376 (453)
Q Consensus 318 g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~-~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 376 (453)
|+++|||||+++++|+|+|++++||..+.+ .+..+|.|++||+||.|+.|.|++++.+.
T Consensus 860 Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 860 QRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred cCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCC
Confidence 999999999999999999999999966553 46788999999999999999999998653
No 47
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=2.2e-42 Score=344.77 Aligned_cols=339 Identities=25% Similarity=0.298 Sum_probs=268.0
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcC-Ccchhhhhccccccccchh
Q psy9399 8 LHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSK-NKIPVMKKNLNQNNNKIYT 86 (453)
Q Consensus 8 l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~ 86 (453)
|++.+.+.+... |.+||+.|.+|++.+.+|+|+++.||||||||+++++|++..+.... ..
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~----------------- 69 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGK----------------- 69 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCC-----------------
Confidence 588999999988 89999999999999999999999999999999999999999988752 11
Q ss_pred hhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcC
Q psy9399 87 HKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSG 166 (453)
Q Consensus 87 ~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~ 166 (453)
...+..+|||+|.++|..++...+..++...+ +.+..-+|+....+..+...+.+||+||||++|.-.+...
T Consensus 70 -------~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G-~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~ 141 (814)
T COG1201 70 -------LEDGIYALYISPLKALNNDIRRRLEEPLRELG-IEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSP 141 (814)
T ss_pred -------CCCceEEEEeCcHHHHHHHHHHHHHHHHHHcC-CccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCH
Confidence 23456899999999999999999999887665 8888889999888888888889999999999997777553
Q ss_pred C--CCCCCccEEEEechhhhcccCChHH----HHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCC--eEEEeccccc
Q psy9399 167 K--INFSHLQILVLDEADRMLDMGFIND----IEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDP--LILKVNSIEK 238 (453)
Q Consensus 167 ~--~~~~~~~~iIiDE~h~~~~~~~~~~----~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~--~~~~~~~~~~ 238 (453)
. ..+.++.++|+||+|.+.+...+.. ++++....+ ..|.|++|||..+ .....+++.... ..+.......
T Consensus 142 ~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~~~k 219 (814)
T COG1201 142 KFRELLRDVRYVIVDEIHALAESKRGVQLALSLERLRELAG-DFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVSAAK 219 (814)
T ss_pred HHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhhCc-ccEEEeehhccCC-HHHHHHHhcCCCCceEEEEcccCC
Confidence 2 2478999999999999986654443 344444445 7899999999875 444555554442 2222222211
Q ss_pred ccccceEEEEEEc------chhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCC-CceeecCCCCCHHHHHHH
Q psy9399 239 KQKNITQSILFVD------DILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISG-FLAAPLHGDLHQNARNRT 311 (453)
Q Consensus 239 ~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~ 311 (453)
. ..+.......+ ........+..+++.+ ..+|||+||+..++.++..|+..+ ..+..+||.++.+.|..+
T Consensus 220 ~-~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~--~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~v 296 (814)
T COG1201 220 K-LEIKVISPVEDLIYDEELWAALYERIAELVKKH--RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEV 296 (814)
T ss_pred c-ceEEEEecCCccccccchhHHHHHHHHHHHhhc--CcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHH
Confidence 1 11111111110 1112233444555555 489999999999999999999876 789999999999999999
Q ss_pred HHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCC-CCCccEEEEeChhh
Q psy9399 312 LENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRA-GRNGFAVSLVNHAE 377 (453)
Q Consensus 312 ~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~-g~~g~~~~~~~~~~ 377 (453)
++.|++|+.+++|||+.++-|||+.+++.||++..|.++..++||+||+|+. +.....+++..+.+
T Consensus 297 E~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~ 363 (814)
T COG1201 297 EERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRD 363 (814)
T ss_pred HHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecCHH
Confidence 9999999999999999999999999999999999999999999999999976 45566777766643
No 48
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=1.9e-41 Score=345.61 Aligned_cols=315 Identities=20% Similarity=0.278 Sum_probs=235.7
Q ss_pred HHHHHhCCCCCCcHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchh
Q psy9399 13 LKALVKVGYTKPTGVQEQAIPAAISG------RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYT 86 (453)
Q Consensus 13 ~~~l~~~~~~~~~~~Q~~~~~~~~~~------~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (453)
......++| .||+.|+++++.+.++ .+.+++||||||||++|+++++..+..
T Consensus 252 ~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~--------------------- 309 (681)
T PRK10917 252 KKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA--------------------- 309 (681)
T ss_pred HHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---------------------
Confidence 344455888 6999999999999876 369999999999999999999887654
Q ss_pred hhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHH---Hh-cCCCCEEEeChHHHHHH
Q psy9399 87 HKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQ---LL-SRNPEILLATPGRLIDH 162 (453)
Q Consensus 87 ~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~Ilv~T~~~l~~~ 162 (453)
+.+++|++||++|+.|+++.++++....+ +++..++|+....+... .+ .+.++|+|+||+.+..
T Consensus 310 ----------g~q~lilaPT~~LA~Q~~~~l~~l~~~~~-i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~- 377 (681)
T PRK10917 310 ----------GYQAALMAPTEILAEQHYENLKKLLEPLG-IRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD- 377 (681)
T ss_pred ----------CCeEEEEeccHHHHHHHHHHHHHHHhhcC-cEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-
Confidence 56899999999999999999999876654 88999999988544332 22 3368999999987743
Q ss_pred HhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEeccccccccc
Q psy9399 163 MNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242 (453)
Q Consensus 163 l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (453)
...+.+++++|+||+|++... ....+.......+++++|||+.+....+.. ..+.........+.....
T Consensus 378 ----~v~~~~l~lvVIDE~Hrfg~~-----qr~~l~~~~~~~~iL~~SATp~prtl~~~~--~g~~~~s~i~~~p~~r~~ 446 (681)
T PRK10917 378 ----DVEFHNLGLVIIDEQHRFGVE-----QRLALREKGENPHVLVMTATPIPRTLAMTA--YGDLDVSVIDELPPGRKP 446 (681)
T ss_pred ----cchhcccceEEEechhhhhHH-----HHHHHHhcCCCCCEEEEeCCCCHHHHHHHH--cCCCceEEEecCCCCCCC
Confidence 335789999999999986432 222333334457899999998764433332 222222122222221222
Q ss_pred ceEEEEEEcchhhHHHHHHHHHhh-CCCCcEEEEeccch--------hHHHHHHHHhhC--CCceeecCCCCCHHHHHHH
Q psy9399 243 ITQSILFVDDILHKNRLLDYLLRD-KRVGQAVVFTATKR--------DADIIADRLNIS--GFLAAPLHGDLHQNARNRT 311 (453)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~lvf~~~~~--------~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~ 311 (453)
+...+.... ....++..+... ..+++++|||+..+ .++.+++.|... +..+..+||+|++.+|..+
T Consensus 447 i~~~~~~~~---~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i 523 (681)
T PRK10917 447 ITTVVIPDS---RRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAV 523 (681)
T ss_pred cEEEEeCcc---cHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHH
Confidence 333333222 222333333222 45579999999653 456777888764 4789999999999999999
Q ss_pred HHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCC-ChhHHHHHhhhccCCCCCccEEEEeCh
Q psy9399 312 LENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPK-FPEDYVHRIGRTGRAGRNGFAVSLVNH 375 (453)
Q Consensus 312 ~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~-~~~~~~Q~~GR~~R~g~~g~~~~~~~~ 375 (453)
+++|++|+.+|||||+++++|+|+|++++||+++.|. ...++.|++||+||.|..|.|+++++.
T Consensus 524 ~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~ 588 (681)
T PRK10917 524 MAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKD 588 (681)
T ss_pred HHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECC
Confidence 9999999999999999999999999999999999986 578899999999999999999999953
No 49
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1.2e-41 Score=341.47 Aligned_cols=325 Identities=20% Similarity=0.231 Sum_probs=239.1
Q ss_pred HHHHHHh-CCCCCCcHHHHHHHHHHhcCC-cEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhh
Q psy9399 12 VLKALVK-VGYTKPTGVQEQAIPAAISGR-DLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKE 89 (453)
Q Consensus 12 ~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~-~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (453)
....+.+ .||. |++||+++++.++.|+ ++++.+|||||||.++.++.+.. ...
T Consensus 4 f~~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~----------------------- 58 (844)
T TIGR02621 4 FDEWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIG----------------------- 58 (844)
T ss_pred HHHHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-ccc-----------------------
Confidence 4444554 5886 9999999999999998 58888999999998766555532 110
Q ss_pred hcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccC----------------------CeeEEEEECCCchHHHHHHhcC
Q psy9399 90 RLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMK----------------------KIKAISILGGMPYLRQMQLLSR 147 (453)
Q Consensus 90 ~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 147 (453)
.....++++++|+++|+.|+++.+++++...+ .+++..++||.....++..+..
T Consensus 59 ----~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~ 134 (844)
T TIGR02621 59 ----AKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPH 134 (844)
T ss_pred ----ccccceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCC
Confidence 11123566688999999999999999886542 3889999999999999999989
Q ss_pred CCCEEEeChHHHHHHHhc---------CCC---CCCCccEEEEechhhhcccCChHHHHHHHhhC--CC---CccEEEEE
Q psy9399 148 NPEILLATPGRLIDHMNS---------GKI---NFSHLQILVLDEADRMLDMGFINDIEKIVDAT--PV---TRQTMLFS 210 (453)
Q Consensus 148 ~~~Ilv~T~~~l~~~l~~---------~~~---~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~--~~---~~~~i~~S 210 (453)
+++|+|+|++.+.+.... .++ .+.++.++|+|||| ++.+|...+..+...+ +. ..|++++|
T Consensus 135 ~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFS 212 (844)
T TIGR02621 135 RPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELT 212 (844)
T ss_pred CCcEEEECHHHHcCCccccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEe
Confidence 999999996555332110 001 15778999999999 6788999999999864 33 26999999
Q ss_pred eecChHHHHHHHhhcCCCeEEEecccccccccceEEEEEEcchhhHHHHHHHH--HhhCCCCcEEEEeccchhHHHHHHH
Q psy9399 211 ATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYL--LRDKRVGQAVVFTATKRDADIIADR 288 (453)
Q Consensus 211 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~lvf~~~~~~~~~l~~~ 288 (453)
||++..+......+..++..+.+.........+.+. +...........+..+ +....++++||||||++.|+.+++.
T Consensus 213 AT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~ 291 (844)
T TIGR02621 213 ATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKL-VPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAK 291 (844)
T ss_pred cCCCccHHHHHHHHccCCceeecccccccccceEEE-EecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHH
Confidence 999987777766666666554443322222333332 2222221111222221 1123457899999999999999999
Q ss_pred HhhCCCceeecCCCCCHHHHH-----HHHHHHhc----CC-------ccEEEEeCCcccCCCCCCCcEEEEcCCCCChhH
Q psy9399 289 LNISGFLAAPLHGDLHQNARN-----RTLENLRR----GR-------IKILVATDVAARGIDVPAITHVFNYDLPKFPED 352 (453)
Q Consensus 289 L~~~~~~~~~~~~~~~~~~r~-----~~~~~f~~----g~-------~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~ 352 (453)
|.+.++ ..+||+|++.+|. .+++.|++ |. ..|||||+++++|+|++. ++||+...| .++
T Consensus 292 L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~es 366 (844)
T TIGR02621 292 LPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FES 366 (844)
T ss_pred HHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHH
Confidence 998776 8999999999999 78999987 44 679999999999999976 788876665 689
Q ss_pred HHHHhhhccCCCCCc-cEEEEe
Q psy9399 353 YVHRIGRTGRAGRNG-FAVSLV 373 (453)
Q Consensus 353 ~~Q~~GR~~R~g~~g-~~~~~~ 373 (453)
|+||+||+||.|+.+ ..++++
T Consensus 367 yIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 367 MQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred HHHHhcccCCCCCCCCceEEEE
Confidence 999999999998863 334444
No 50
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=9.3e-42 Score=328.60 Aligned_cols=328 Identities=24% Similarity=0.346 Sum_probs=255.2
Q ss_pred HHHHHHh-CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhh
Q psy9399 12 VLKALVK-VGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKER 90 (453)
Q Consensus 12 ~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (453)
+...|.. +|+..+++-|+++|..+++++++++.+|||+||+++|.+|++-.
T Consensus 5 ~~~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~---------------------------- 56 (590)
T COG0514 5 AQQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL---------------------------- 56 (590)
T ss_pred HHHHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc----------------------------
Confidence 3455666 89999999999999999999999999999999999999999864
Q ss_pred cccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHh----cCCCCEEEeChHHHHHHHhcC
Q psy9399 91 LRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLL----SRNPEILLATPGRLIDHMNSG 166 (453)
Q Consensus 91 ~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~ 166 (453)
.+-+|||.|..+|...+.+.+...+ +.+..+.+.....+....+ ....+++.-+|++|..-...+
T Consensus 57 ------~G~TLVVSPLiSLM~DQV~~l~~~G-----i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~ 125 (590)
T COG0514 57 ------EGLTLVVSPLISLMKDQVDQLEAAG-----IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLE 125 (590)
T ss_pred ------CCCEEEECchHHHHHHHHHHHHHcC-----ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHH
Confidence 3379999999999988888888866 6666666655544443332 335789999999985543333
Q ss_pred CCCCCCccEEEEechhhhcccC--ChHHHHHH---HhhCCCCccEEEEEeecChHHHHHHHhhcC--CCeEEEecccccc
Q psy9399 167 KINFSHLQILVLDEADRMLDMG--FINDIEKI---VDATPVTRQTMLFSATLDGIVGNMAENITK--DPLILKVNSIEKK 239 (453)
Q Consensus 167 ~~~~~~~~~iIiDE~h~~~~~~--~~~~~~~~---~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 239 (453)
.+.-..+.+++|||||.++.|| |......+ ...++ ..+++++|||.++.+.......+. .+..+.... +
T Consensus 126 ~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sf---d 201 (590)
T COG0514 126 LLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSF---D 201 (590)
T ss_pred HHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecC---C
Confidence 3334678999999999999997 66655544 44555 568999999998776654433332 332333222 2
Q ss_pred cccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCC
Q psy9399 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGR 319 (453)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 319 (453)
.+++............+...+.. ......+..+|||.|++.++.+++.|+..|+.+..+|++|+.++|..+.++|.+++
T Consensus 202 RpNi~~~v~~~~~~~~q~~fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~ 280 (590)
T COG0514 202 RPNLALKVVEKGEPSDQLAFLAT-VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDE 280 (590)
T ss_pred CchhhhhhhhcccHHHHHHHHHh-hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCC
Confidence 23443333333322222222222 12455567899999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHH
Q psy9399 320 IKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKK 383 (453)
Q Consensus 320 ~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~ 383 (453)
++|+|||.++++|||-|+++.|||+++|.|.++|.|-+|||||.|.+..+++++++.|....+.
T Consensus 281 ~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~ 344 (590)
T COG0514 281 IKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRY 344 (590)
T ss_pred CcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988654443
No 51
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1.2e-40 Score=337.81 Aligned_cols=318 Identities=21% Similarity=0.300 Sum_probs=236.0
Q ss_pred HHHHHHHhCCCCCCcHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccc
Q psy9399 11 LVLKALVKVGYTKPTGVQEQAIPAAISG------RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKI 84 (453)
Q Consensus 11 ~~~~~l~~~~~~~~~~~Q~~~~~~~~~~------~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (453)
.+.+.+..++| +||+.|+++++.+.++ .+.+++||||||||.+|+++++..+..
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~------------------- 283 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA------------------- 283 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc-------------------
Confidence 34566677999 6999999999999865 248999999999999999999887654
Q ss_pred hhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHH---Hh-cCCCCEEEeChHHHH
Q psy9399 85 YTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQ---LL-SRNPEILLATPGRLI 160 (453)
Q Consensus 85 ~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~Ilv~T~~~l~ 160 (453)
+.+++|++||++|+.|+++.+.++....+ +++..++|+........ .+ .+.++|+|+||+.+.
T Consensus 284 ------------g~qvlilaPT~~LA~Q~~~~~~~l~~~~g-i~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~ 350 (630)
T TIGR00643 284 ------------GYQVALMAPTEILAEQHYNSLRNLLAPLG-IEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQ 350 (630)
T ss_pred ------------CCcEEEECCHHHHHHHHHHHHHHHhcccC-cEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHh
Confidence 55899999999999999999999876554 88999999887655322 22 346799999998775
Q ss_pred HHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCC--CCccEEEEEeecChHHHHHHHhhcCCCeEEEeccccc
Q psy9399 161 DHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATP--VTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238 (453)
Q Consensus 161 ~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~--~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (453)
+ ...+.+++++|+||+|++.... ...+..... ...+++++|||+.+....+. ...+.........+.
T Consensus 351 ~-----~~~~~~l~lvVIDEaH~fg~~q----r~~l~~~~~~~~~~~~l~~SATp~prtl~l~--~~~~l~~~~i~~~p~ 419 (630)
T TIGR00643 351 E-----KVEFKRLALVIIDEQHRFGVEQ----RKKLREKGQGGFTPHVLVMSATPIPRTLALT--VYGDLDTSIIDELPP 419 (630)
T ss_pred c-----cccccccceEEEechhhccHHH----HHHHHHhcccCCCCCEEEEeCCCCcHHHHHH--hcCCcceeeeccCCC
Confidence 4 3457899999999999864332 122222222 25689999999865433222 122211111111111
Q ss_pred ccccceEEEEEEcchhhHHHHHHHHHhh-CCCCcEEEEeccc--------hhHHHHHHHHhh--CCCceeecCCCCCHHH
Q psy9399 239 KQKNITQSILFVDDILHKNRLLDYLLRD-KRVGQAVVFTATK--------RDADIIADRLNI--SGFLAAPLHGDLHQNA 307 (453)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~lvf~~~~--------~~~~~l~~~L~~--~~~~~~~~~~~~~~~~ 307 (453)
....+....... .....++..+.+. ..+.+++|||+.. ..++.+++.|.+ .+..+..+||+|++.+
T Consensus 420 ~r~~i~~~~~~~---~~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~e 496 (630)
T TIGR00643 420 GRKPITTVLIKH---DEKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDE 496 (630)
T ss_pred CCCceEEEEeCc---chHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHH
Confidence 112232222221 2223344444333 3457899999876 456677777775 3678999999999999
Q ss_pred HHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCC-ChhHHHHHhhhccCCCCCccEEEEeCh
Q psy9399 308 RNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPK-FPEDYVHRIGRTGRAGRNGFAVSLVNH 375 (453)
Q Consensus 308 r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~-~~~~~~Q~~GR~~R~g~~g~~~~~~~~ 375 (453)
|..+++.|++|+.+|||||+++++|+|+|++++||+++.|. +..++.|++||+||.|..|.|++++.+
T Consensus 497 R~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~ 565 (630)
T TIGR00643 497 KEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKN 565 (630)
T ss_pred HHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECC
Confidence 99999999999999999999999999999999999999886 678899999999999999999999943
No 52
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.4e-39 Score=299.81 Aligned_cols=322 Identities=22% Similarity=0.285 Sum_probs=241.4
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEE
Q psy9399 22 TKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRML 101 (453)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 101 (453)
.++|.||......++.+ |++++.|||-|||+++++.+...+... ++++|
T Consensus 14 ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~------------------------------~~kvl 62 (542)
T COG1111 14 IEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF------------------------------GGKVL 62 (542)
T ss_pred ccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc------------------------------CCeEE
Confidence 47899999988887765 999999999999999998888777652 33899
Q ss_pred EEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEech
Q psy9399 102 VLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181 (453)
Q Consensus 102 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~ 181 (453)
+++||+.|+.|.++.+.++..... -.++.++|..+..+....|.. ..|+|+||+.+.+.+..+.+++.++.++|||||
T Consensus 63 fLAPTKPLV~Qh~~~~~~v~~ip~-~~i~~ltGev~p~~R~~~w~~-~kVfvaTPQvveNDl~~Grid~~dv~~lifDEA 140 (542)
T COG1111 63 FLAPTKPLVLQHAEFCRKVTGIPE-DEIAALTGEVRPEEREELWAK-KKVFVATPQVVENDLKAGRIDLDDVSLLIFDEA 140 (542)
T ss_pred EecCCchHHHHHHHHHHHHhCCCh-hheeeecCCCChHHHHHHHhh-CCEEEeccHHHHhHHhcCccChHHceEEEechh
Confidence 999999999999999999886544 677888888887766555544 589999999999999999999999999999999
Q ss_pred hhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHH---hhcCCCeEEEeccccccc---ccceEEEEEEcc---
Q psy9399 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAE---NITKDPLILKVNSIEKKQ---KNITQSILFVDD--- 252 (453)
Q Consensus 182 h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--- 252 (453)
|+-....-+..+...+....++..++++||||....+.+.+ .+.-....+.....+... ..+...++.++.
T Consensus 141 HRAvGnyAYv~Va~~y~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e 220 (542)
T COG1111 141 HRAVGNYAYVFVAKEYLRSAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEE 220 (542)
T ss_pred hhccCcchHHHHHHHHHHhccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHH
Confidence 98664444445555555556677899999999654433332 222221112111100000 000000000000
Q ss_pred --------------------------------------------------h-----------------------------
Q psy9399 253 --------------------------------------------------I----------------------------- 253 (453)
Q Consensus 253 --------------------------------------------------~----------------------------- 253 (453)
.
T Consensus 221 ~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~ 300 (542)
T COG1111 221 IKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIR 300 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChH
Confidence 0
Q ss_pred ----------------------------------------------hhHH----HHHHHHHhhCCCCcEEEEeccchhHH
Q psy9399 254 ----------------------------------------------LHKN----RLLDYLLRDKRVGQAVVFTATKRDAD 283 (453)
Q Consensus 254 ----------------------------------------------~~~~----~~~~~l~~~~~~~~~lvf~~~~~~~~ 283 (453)
..+. +++...++...+.++|||++.+++|+
T Consensus 301 ~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae 380 (542)
T COG1111 301 PFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAE 380 (542)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHH
Confidence 0000 11122222345579999999999999
Q ss_pred HHHHHHhhCCCcee--e-------cCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHH
Q psy9399 284 IIADRLNISGFLAA--P-------LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYV 354 (453)
Q Consensus 284 ~l~~~L~~~~~~~~--~-------~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~ 354 (453)
.+.++|.+.+..+. + ...||++.++.+++++|++|+++|||||+++++|+|+|.++.||+|++..|...++
T Consensus 381 ~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~I 460 (542)
T COG1111 381 EIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSI 460 (542)
T ss_pred HHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHH
Confidence 99999998877653 2 23579999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCCCCccEEEEeChhh
Q psy9399 355 HRIGRTGRAGRNGFAVSLVNHAE 377 (453)
Q Consensus 355 Q~~GR~~R~g~~g~~~~~~~~~~ 377 (453)
||.||+||. +.|.+++++...+
T Consensus 461 QR~GRTGR~-r~Grv~vLvt~gt 482 (542)
T COG1111 461 QRKGRTGRK-RKGRVVVLVTEGT 482 (542)
T ss_pred HhhCccccC-CCCeEEEEEecCc
Confidence 999999998 8899999998763
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1.1e-39 Score=345.16 Aligned_cols=312 Identities=23% Similarity=0.283 Sum_probs=224.0
Q ss_pred EEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHH--
Q psy9399 43 VSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY-- 120 (453)
Q Consensus 43 v~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~-- 120 (453)
|+||||||||++|++|++..+........ .......+.++|||+|+++|+.|+.+.++..
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~------------------~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~ 62 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDT------------------REAHKRKTSRILYISPIKALGTDVQRNLQIPLK 62 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccc------------------cccccCCCCEEEEEeChHHHHHHHHHHHHHHHH
Confidence 57999999999999999998875321000 0000123569999999999999999887641
Q ss_pred ---------hcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcC-CCCCCCccEEEEechhhhcccCCh
Q psy9399 121 ---------GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSG-KINFSHLQILVLDEADRMLDMGFI 190 (453)
Q Consensus 121 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~-~~~~~~~~~iIiDE~h~~~~~~~~ 190 (453)
+.....+.+...+|+....+..+.+.+.++|+|+||++|..++..+ ...++++++|||||+|.+.+..++
T Consensus 63 ~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG 142 (1490)
T PRK09751 63 GIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRG 142 (1490)
T ss_pred hhhhhhhhcccccCceEEEEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccc
Confidence 1112248888999999888877777778999999999998877643 235899999999999999875433
Q ss_pred ----HHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCC-CeEEEecccccccccceEEEEEEcchh-----------
Q psy9399 191 ----NDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKD-PLILKVNSIEKKQKNITQSILFVDDIL----------- 254 (453)
Q Consensus 191 ----~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 254 (453)
..+..+...++...|+|++|||+++ ...+.+++... +..+..... .....+.. .+...+..
T Consensus 143 ~~Lel~LeRL~~l~~~~~QrIgLSATI~n-~eevA~~L~g~~pv~Iv~~~~-~r~~~l~v-~vp~~d~~~~~~~~~~~~~ 219 (1490)
T PRK09751 143 AHLALSLERLDALLHTSAQRIGLSATVRS-ASDVAAFLGGDRPVTVVNPPA-MRHPQIRI-VVPVANMDDVSSVASGTGE 219 (1490)
T ss_pred cHHHHHHHHHHHhCCCCCeEEEEEeeCCC-HHHHHHHhcCCCCEEEECCCC-CcccceEE-EEecCchhhcccccccccc
Confidence 3455666666778899999999987 35555555433 443322111 11111211 11111100
Q ss_pred ---------hHHHHHHHHHh-hCCCCcEEEEeccchhHHHHHHHHhhCC-------------------------------
Q psy9399 255 ---------HKNRLLDYLLR-DKRVGQAVVFTATKRDADIIADRLNISG------------------------------- 293 (453)
Q Consensus 255 ---------~~~~~~~~l~~-~~~~~~~lvf~~~~~~~~~l~~~L~~~~------------------------------- 293 (453)
....+...++. ...+.++||||||+..|+.++..|++..
T Consensus 220 ~~~~~r~~~i~~~v~~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (1490)
T PRK09751 220 DSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSS 299 (1490)
T ss_pred ccchhhhhhhhHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccc
Confidence 00011112222 1345789999999999999999997531
Q ss_pred --CceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCC-CCccEE
Q psy9399 294 --FLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAG-RNGFAV 370 (453)
Q Consensus 294 --~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g-~~g~~~ 370 (453)
..+..+||++++++|..+++.|++|++++||||++++.|||++++++||+++.|.+..+|+||+||+||.. ..+.++
T Consensus 300 ~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gl 379 (1490)
T PRK09751 300 DVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGL 379 (1490)
T ss_pred cceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEE
Confidence 12568999999999999999999999999999999999999999999999999999999999999999973 334555
Q ss_pred EEeCh
Q psy9399 371 SLVNH 375 (453)
Q Consensus 371 ~~~~~ 375 (453)
++..+
T Consensus 380 i~p~~ 384 (1490)
T PRK09751 380 FFPRT 384 (1490)
T ss_pred EEeCc
Confidence 44443
No 54
>KOG0329|consensus
Probab=100.00 E-value=3.2e-41 Score=283.14 Aligned_cols=314 Identities=33% Similarity=0.590 Sum_probs=275.6
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQN 80 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 80 (453)
+.|.++-|.+++.+++-+.||..|+..|.++||...-|-++++.|..|.|||-+|.+.-++++.-
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiep--------------- 106 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEP--------------- 106 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCC---------------
Confidence 35777888999999999999999999999999999999999999999999999999988888765
Q ss_pred cccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHH
Q psy9399 81 NNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~ 160 (453)
.++...++++|.|++|+.|+.++..+|..+.+.++++..+||.........+.+.++|+|+||++++
T Consensus 107 -------------v~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGril 173 (387)
T KOG0329|consen 107 -------------VDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRIL 173 (387)
T ss_pred -------------CCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHH
Confidence 4556789999999999999999999999999999999999999998888888888999999999999
Q ss_pred HHHhcCCCCCCCccEEEEechhhhcc-cCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecc-ccc
Q psy9399 161 DHMNSGKINFSHLQILVLDEADRMLD-MGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNS-IEK 238 (453)
Q Consensus 161 ~~l~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-~~~ 238 (453)
.+.+++.+.++++...|+||++.++. .....++..+....|...|.+.+|||++..+...++.++++|..+.+.. ...
T Consensus 174 ALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KL 253 (387)
T KOG0329|consen 174 ALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKL 253 (387)
T ss_pred HHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhh
Confidence 99999999999999999999998774 3467888999999999999999999999999999999999998877765 333
Q ss_pred ccccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcC
Q psy9399 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRG 318 (453)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 318 (453)
..+.+.+.++... ...+...+..++....-.+++||+.+.... . |
T Consensus 254 tLHGLqQ~YvkLk-e~eKNrkl~dLLd~LeFNQVvIFvKsv~Rl------------------------------~-f--- 298 (387)
T KOG0329|consen 254 TLHGLQQYYVKLK-ENEKNRKLNDLLDVLEFNQVVIFVKSVQRL------------------------------S-F--- 298 (387)
T ss_pred hhhhHHHHHHhhh-hhhhhhhhhhhhhhhhhcceeEeeehhhhh------------------------------h-h---
Confidence 4456666666553 345666667777777778999999887650 0 3
Q ss_pred CccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhH
Q psy9399 319 RIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAER 378 (453)
Q Consensus 319 ~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 378 (453)
..+ +|+|+.+++|+|+..++.|++||.|.++++|+||.|||||.|..|.+++|++..+.
T Consensus 299 ~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~d 357 (387)
T KOG0329|consen 299 QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEND 357 (387)
T ss_pred hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhh
Confidence 123 89999999999999999999999999999999999999999999999999987654
No 55
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=1.9e-39 Score=321.04 Aligned_cols=301 Identities=16% Similarity=0.200 Sum_probs=215.8
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEE
Q psy9399 22 TKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRML 101 (453)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 101 (453)
..|+++|+++++.++.+++.++++|||+|||.++...+...+.. ...++|
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~------------------------------~~~~vL 162 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLEN------------------------------YEGKVL 162 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhc------------------------------CCCeEE
Confidence 47999999999999999899999999999998765433222221 233899
Q ss_pred EEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEech
Q psy9399 102 VLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181 (453)
Q Consensus 102 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~ 181 (453)
|++||++|+.||.+.+.+++.... ..+..+.+|.... ...+|+|+|++++.+... ..+.++++||+|||
T Consensus 163 ilvpt~eL~~Q~~~~l~~~~~~~~-~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEa 231 (501)
T PHA02558 163 IIVPTTSLVTQMIDDFVDYRLFPR-EAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDEC 231 (501)
T ss_pred EEECcHHHHHHHHHHHHHhccccc-cceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEch
Confidence 999999999999999999875432 3444555554321 346899999999876432 23678999999999
Q ss_pred hhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHH--HHhhcCCCeEEEecccc--cc--cccceEEEEE------
Q psy9399 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNM--AENITKDPLILKVNSIE--KK--QKNITQSILF------ 249 (453)
Q Consensus 182 h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~--~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~------ 249 (453)
|++.+.. +..++..++...+++++|||+....... ....+++ ......... .. ..........
T Consensus 232 H~~~~~~----~~~il~~~~~~~~~lGLTATp~~~~~~~~~~~~~fG~-i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~ 306 (501)
T PHA02558 232 HLFTGKS----LTSIITKLDNCKFKFGLTGSLRDGKANILQYVGLFGD-IFKPVTTSQLMEEGQVTDLKINSIFLRYPDE 306 (501)
T ss_pred hcccchh----HHHHHHhhhccceEEEEeccCCCccccHHHHHHhhCC-ceEEecHHHHHhCCCcCCceEEEEeccCCHH
Confidence 9987644 4555666666778999999996532211 1112221 111111000 00 0000000000
Q ss_pred ----------------EcchhhHHHHHHHHHhh--CCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHH
Q psy9399 250 ----------------VDDILHKNRLLDYLLRD--KRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRT 311 (453)
Q Consensus 250 ----------------~~~~~~~~~~~~~l~~~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~ 311 (453)
......+...+..+... ..+.+++|||+++++++.+++.|++.+.++..+||+++.++|..+
T Consensus 307 ~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i 386 (501)
T PHA02558 307 DRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEM 386 (501)
T ss_pred HhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHH
Confidence 00111122222222221 345689999999999999999999999999999999999999999
Q ss_pred HHHHhcCCccEEEEe-CCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCcc
Q psy9399 312 LENLRRGRIKILVAT-DVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGF 368 (453)
Q Consensus 312 ~~~f~~g~~~vLv~T-~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~ 368 (453)
++.|++|+..||||| +++++|+|+|++++||+++++.+...|+||+||++|.+..+.
T Consensus 387 ~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~ 444 (501)
T PHA02558 387 KKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKS 444 (501)
T ss_pred HHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCc
Confidence 999999999999999 899999999999999999999999999999999999876644
No 56
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=2.2e-39 Score=327.79 Aligned_cols=334 Identities=23% Similarity=0.283 Sum_probs=251.8
Q ss_pred CCCHHHHHHHHhCCCCCCcHHHHHHHHHHh-cCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccch
Q psy9399 7 GLHELVLKALVKVGYTKPTGVQEQAIPAAI-SGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIY 85 (453)
Q Consensus 7 ~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~-~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (453)
.+.+.+.+.+...++.++.+.|++++.... +++|++|++|||||||+++++.++..+.+.
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~------------------- 75 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG------------------- 75 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-------------------
Confidence 367888888889999899999998888765 458999999999999999999999988862
Q ss_pred hhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhc
Q psy9399 86 THKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNS 165 (453)
Q Consensus 86 ~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~ 165 (453)
+.++||+||+++|+.+..++++++.. . ++++...+|+.+.... ...+++|+|+||+++...+++
T Consensus 76 -----------~~k~vYivPlkALa~Ek~~~~~~~~~-~-GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~ 139 (766)
T COG1204 76 -----------GGKVVYIVPLKALAEEKYEEFSRLEE-L-GIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRK 139 (766)
T ss_pred -----------CCcEEEEeChHHHHHHHHHHhhhHHh-c-CCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhc
Confidence 45899999999999999999994332 2 3899999998875542 234689999999999999988
Q ss_pred CCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCC---CccEEEEEeecChHHHHHHHhhcCCCeEEEeccccccccc
Q psy9399 166 GKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPV---TRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242 (453)
Q Consensus 166 ~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~---~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (453)
....+..+++||+||+|.+.+...+..++.+....+. ..|++++|||+++ ...++.+...++..-...+.+.....
T Consensus 140 ~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN-~~evA~wL~a~~~~~~~rp~~l~~~v 218 (766)
T COG1204 140 RPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSATLPN-AEEVADWLNAKLVESDWRPVPLRRGV 218 (766)
T ss_pred CcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCcceEEEEEeeecCC-HHHHHHHhCCcccccCCCCcccccCC
Confidence 8777889999999999999888666666666655443 3699999999987 45666666555442222222222121
Q ss_pred ce-EEEEEEcchh------hHHHHHHHHHh-hCCCCcEEEEeccchhHHHHHHHHhh---------------------C-
Q psy9399 243 IT-QSILFVDDIL------HKNRLLDYLLR-DKRVGQAVVFTATKRDADIIADRLNI---------------------S- 292 (453)
Q Consensus 243 ~~-~~~~~~~~~~------~~~~~~~~l~~-~~~~~~~lvf~~~~~~~~~l~~~L~~---------------------~- 292 (453)
.. +.+....... .....+..+.. ...++++||||++++.+...+..|.. .
T Consensus 219 ~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~ 298 (766)
T COG1204 219 PYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILI 298 (766)
T ss_pred ccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhcccccccccc
Confidence 11 1222221111 11222222222 35668999999999999988888862 0
Q ss_pred ---------------CCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEE----EcC-----CCC
Q psy9399 293 ---------------GFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVF----NYD-----LPK 348 (453)
Q Consensus 293 ---------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi----~~~-----~~~ 348 (453)
-..++++|++++.++|..+.+.|++|.++|||||++++.|+|+|.-.+|| .++ .+.
T Consensus 299 ~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i 378 (766)
T COG1204 299 PETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDI 378 (766)
T ss_pred ccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEEC
Confidence 01278899999999999999999999999999999999999999766655 244 344
Q ss_pred ChhHHHHHhhhccCCCCC--ccEEEEeChh
Q psy9399 349 FPEDYVHRIGRTGRAGRN--GFAVSLVNHA 376 (453)
Q Consensus 349 ~~~~~~Q~~GR~~R~g~~--g~~~~~~~~~ 376 (453)
+..++.|++|||||.|-+ |.++++.+..
T Consensus 379 ~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~ 408 (766)
T COG1204 379 PVLDVLQMAGRAGRPGYDDYGEAIILATSH 408 (766)
T ss_pred chhhHhhccCcCCCCCcCCCCcEEEEecCc
Confidence 678999999999999866 7788777443
No 57
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=4.2e-39 Score=299.01 Aligned_cols=336 Identities=22% Similarity=0.278 Sum_probs=264.0
Q ss_pred CCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHH-HhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhcccccc
Q psy9399 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPA-AISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNN 81 (453)
Q Consensus 3 ~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 81 (453)
.+.|.+++++...|+..|+.++.|+|.-++.+ +++|+|.+|..+|+||||++.-++-+..+..
T Consensus 196 vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~---------------- 259 (830)
T COG1202 196 VDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS---------------- 259 (830)
T ss_pred ccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh----------------
Confidence 35688999999999999999999999999988 6799999999999999999998888777665
Q ss_pred ccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHH----HHhcCCCCEEEeChH
Q psy9399 82 NKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQM----QLLSRNPEILLATPG 157 (453)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Ilv~T~~ 157 (453)
.+.+.|+++|..+|+.|-++.|++--...+ +++..-.|........ -.....+||+|+|++
T Consensus 260 --------------~g~KmlfLvPLVALANQKy~dF~~rYs~Lg-lkvairVG~srIk~~~~pv~~~t~~dADIIVGTYE 324 (830)
T COG1202 260 --------------GGKKMLFLVPLVALANQKYEDFKERYSKLG-LKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYE 324 (830)
T ss_pred --------------CCCeEEEEehhHHhhcchHHHHHHHhhccc-ceEEEEechhhhcccCCccccCCCCCCcEEEeech
Confidence 366899999999999999999887544443 6665555544433221 112236799999999
Q ss_pred HHHHHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhh---CCCCccEEEEEeecChHHHHHHHhhcCCCeEEEec
Q psy9399 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDA---TPVTRQTMLFSATLDGIVGNMAENITKDPLILKVN 234 (453)
Q Consensus 158 ~l~~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~---~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 234 (453)
-+-..++.+ ..+.+++.|||||+|++.+...+..+.-++.. +-...|+|++|||..+. ..+++.+..+.....-.
T Consensus 325 GiD~lLRtg-~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~~R 402 (830)
T COG1202 325 GIDYLLRTG-KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYDER 402 (830)
T ss_pred hHHHHHHcC-CcccccceEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeecCC
Confidence 998888877 46899999999999999886655555544332 33468999999998663 44555555444333222
Q ss_pred ccccccccceEEEEEEcchhhHHHHHHHHHhh--------CCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHH
Q psy9399 235 SIEKKQKNITQSILFVDDILHKNRLLDYLLRD--------KRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQN 306 (453)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 306 (453)
+ ..+...++.......+..++..+.+. .-.++++||++|+..|..++..|...|+++..+|++++..
T Consensus 403 P-----VplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~ 477 (830)
T COG1202 403 P-----VPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYK 477 (830)
T ss_pred C-----CChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHH
Confidence 2 33445566677777888888777663 2347999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEE---cC-CCCChhHHHHHhhhccCCCCC--ccEEEEeChh
Q psy9399 307 ARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFN---YD-LPKFPEDYVHRIGRTGRAGRN--GFAVSLVNHA 376 (453)
Q Consensus 307 ~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~---~~-~~~~~~~~~Q~~GR~~R~g~~--g~~~~~~~~~ 376 (453)
+|..+...|.++++.++|+|.+++.|+|+|.-.+|+. ++ -..++.+|.|+.|||||.+-. |.+|+++.+.
T Consensus 478 eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 478 ERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred HHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 9999999999999999999999999999986554431 11 234799999999999998744 8888887654
No 58
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=3.5e-38 Score=315.01 Aligned_cols=318 Identities=16% Similarity=0.213 Sum_probs=229.3
Q ss_pred HHHHHHHHHHhcCCcEEEEcCCCchHHHH---------HHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCC
Q psy9399 26 GVQEQAIPAAISGRDLIVSSQTGSGKTAA---------FMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPA 96 (453)
Q Consensus 26 ~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~---------~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (453)
.+|+++++.+.+++++++.|+||||||.+ |+.+.+..+.+-. ....
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~-------------------------~~~~ 221 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID-------------------------PNFI 221 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc-------------------------cccC
Confidence 67889999999999999999999999986 3333343332100 0123
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcc--cCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCcc
Q psy9399 97 QPRMLVLTPTRELALQVTAATERYGLY--MKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQ 174 (453)
Q Consensus 97 ~~~~lil~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~ 174 (453)
..++++++|+++|+.|+...+.+..++ .....+...+||... ..........+|+|+|+.... ..+.+++
T Consensus 222 ~~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~l-------~~L~~v~ 293 (675)
T PHA02653 222 ERPIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLTL-------NKLFDYG 293 (675)
T ss_pred CcEEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcccc-------cccccCC
Confidence 458999999999999999888775543 223567788888762 221222336789999975311 1468899
Q ss_pred EEEEechhhhcccCChHHHHHHHhhC-CCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccccccceEEEEEEcc-
Q psy9399 175 ILVLDEADRMLDMGFINDIEKIVDAT-PVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDD- 252 (453)
Q Consensus 175 ~iIiDE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 252 (453)
+||+||||.+...+ +.+..++... +..+|++++|||++.....+ ..++.++..+..... ....+.+.+.....
T Consensus 294 ~VVIDEaHEr~~~~--DllL~llk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr--t~~pV~~~yi~~~~~ 368 (675)
T PHA02653 294 TVIIDEVHEHDQIG--DIIIAVARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG--TLFPISEVYVKNKYN 368 (675)
T ss_pred EEEccccccCccch--hHHHHHHHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC--cCCCeEEEEeecCcc
Confidence 99999999987665 3344444333 33358999999998777766 456777777766431 12344444443211
Q ss_pred --------hhhHHHHHHHHHhh--CCCCcEEEEeccchhHHHHHHHHhhC--CCceeecCCCCCHHHHHHHHHHH-hcCC
Q psy9399 253 --------ILHKNRLLDYLLRD--KRVGQAVVFTATKRDADIIADRLNIS--GFLAAPLHGDLHQNARNRTLENL-RRGR 319 (453)
Q Consensus 253 --------~~~~~~~~~~l~~~--~~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f-~~g~ 319 (453)
...+..++..+... ..++.+|||++++.+++.+++.|... ++.+..+||++++. ...++.| ++|+
T Consensus 369 ~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk 446 (675)
T PHA02653 369 PKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKN 446 (675)
T ss_pred cccchhhhHHHHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCc
Confidence 11122233333332 23468999999999999999999876 68999999999975 4666777 6899
Q ss_pred ccEEEEeCCcccCCCCCCCcEEEEcC---CCC---------ChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHH
Q psy9399 320 IKILVATDVAARGIDVPAITHVFNYD---LPK---------FPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKI 384 (453)
Q Consensus 320 ~~vLv~T~~~~~Gvdi~~~~~Vi~~~---~~~---------~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~ 384 (453)
.+|||||+++++|+|+|++++||+++ .|. |..++.||+||+||. .+|.|+.+++..+...+.++
T Consensus 447 ~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI~ri 522 (675)
T PHA02653 447 PSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPIKRI 522 (675)
T ss_pred eeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHHHHH
Confidence 99999999999999999999999998 443 778999999999999 78999999998765444443
No 59
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=4.7e-37 Score=324.57 Aligned_cols=301 Identities=23% Similarity=0.283 Sum_probs=228.2
Q ss_pred HHHh-CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhccc
Q psy9399 15 ALVK-VGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRF 93 (453)
Q Consensus 15 ~l~~-~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (453)
.+.+ +|+ .|+++|..+++.++.|++++++||||+|||. +++++...+..
T Consensus 72 ~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~---------------------------- 121 (1176)
T PRK09401 72 FFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK---------------------------- 121 (1176)
T ss_pred HHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh----------------------------
Confidence 4444 577 7999999999999999999999999999996 54554443322
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCch-----HHHHHHhc-CCCCEEEeChHHHHHHHhcCC
Q psy9399 94 KPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPY-----LRQMQLLS-RNPEILLATPGRLIDHMNSGK 167 (453)
Q Consensus 94 ~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~Ilv~T~~~l~~~l~~~~ 167 (453)
.+.+++|++||++|+.|+.+.+..++.... +.+..+.++... .+....+. ..++|+|+||+.|.+++. .
T Consensus 122 --~g~~alIL~PTreLa~Qi~~~l~~l~~~~~-~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~ 196 (1176)
T PRK09401 122 --KGKKSYIIFPTRLLVEQVVEKLEKFGEKVG-CGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--E 196 (1176)
T ss_pred --cCCeEEEEeccHHHHHHHHHHHHHHhhhcC-ceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--h
Confidence 256899999999999999999999987655 666666655432 22222233 468999999999998776 3
Q ss_pred CCCCCccEEEEechhhhcc-----------cCCh-HHHHHHHhhCCC------------------------CccEEEEEe
Q psy9399 168 INFSHLQILVLDEADRMLD-----------MGFI-NDIEKIVDATPV------------------------TRQTMLFSA 211 (453)
Q Consensus 168 ~~~~~~~~iIiDE~h~~~~-----------~~~~-~~~~~~~~~~~~------------------------~~~~i~~SA 211 (453)
+...+++++|+||||++++ .||. ..+..++..++. ..|++++||
T Consensus 197 l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSA 276 (1176)
T PRK09401 197 LPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSA 276 (1176)
T ss_pred ccccccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeC
Confidence 4456799999999999986 4564 566666666553 678999999
Q ss_pred ecChH-HHHHHHhhcCCCeEEEecccccccccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchh---HHHHHH
Q psy9399 212 TLDGI-VGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRD---ADIIAD 287 (453)
Q Consensus 212 T~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~---~~~l~~ 287 (453)
|.++. +.. ..+.++..+.+........++.+.+.... .+...+..++.... .++||||+++.. ++.+++
T Consensus 277 T~~~~~~~~---~l~~~ll~~~v~~~~~~~rnI~~~yi~~~---~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~ 349 (1176)
T PRK09401 277 TGRPRGNRV---KLFRELLGFEVGSPVFYLRNIVDSYIVDE---DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAE 349 (1176)
T ss_pred CCCccchHH---HHhhccceEEecCcccccCCceEEEEEcc---cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHH
Confidence 99753 332 12233333444443334456767666553 34445555555443 589999999887 999999
Q ss_pred HHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEE----eCCcccCCCCCC-CcEEEEcCCCC------ChhHHHHH
Q psy9399 288 RLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVA----TDVAARGIDVPA-ITHVFNYDLPK------FPEDYVHR 356 (453)
Q Consensus 288 ~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~----T~~~~~Gvdi~~-~~~Vi~~~~~~------~~~~~~Q~ 356 (453)
.|+..|+++..+||+| .+.++.|++|+++|||| |+++++|+|+|+ +++||+++.|. ....+.++
T Consensus 350 ~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~ 424 (1176)
T PRK09401 350 YLEDLGINAELAISGF-----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFL 424 (1176)
T ss_pred HHHHCCCcEEEEeCcH-----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHH
Confidence 9999999999999999 23459999999999999 689999999999 89999999997 56789999
Q ss_pred hhhccC
Q psy9399 357 IGRTGR 362 (453)
Q Consensus 357 ~GR~~R 362 (453)
+||+..
T Consensus 425 ~~r~~~ 430 (1176)
T PRK09401 425 LLRLLS 430 (1176)
T ss_pred HHHHHh
Confidence 999853
No 60
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=1.6e-37 Score=297.62 Aligned_cols=300 Identities=20% Similarity=0.206 Sum_probs=204.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATER 119 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 119 (453)
++++.||||||||++++.+++..+.+. .+.+++|++|+++|+.|+.+.+..
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~-----------------------------~~~~ii~v~P~~~L~~q~~~~l~~ 51 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ-----------------------------KADRVIIALPTRATINAMYRRAKE 51 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC-----------------------------CCCeEEEEeehHHHHHHHHHHHHH
Confidence 478999999999999999999875431 245899999999999999999988
Q ss_pred HhcccCCeeEEEEECCCch------------HHHHHHh------cCCCCEEEeChHHHHHHHhcCCC----CC--CCccE
Q psy9399 120 YGLYMKKIKAISILGGMPY------------LRQMQLL------SRNPEILLATPGRLIDHMNSGKI----NF--SHLQI 175 (453)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~------~~~~~Ilv~T~~~l~~~l~~~~~----~~--~~~~~ 175 (453)
+... ....++++... ....... ....+|+|+||+++...+..... .+ -..++
T Consensus 52 ~f~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~ 127 (358)
T TIGR01587 52 LFGS----NLGLLHSSSSFKRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSL 127 (358)
T ss_pred HhCc----ccEEeeccHHHHHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCE
Confidence 7421 23333333221 0001111 11357999999999887765211 11 12378
Q ss_pred EEEechhhhcccCChHHHHHHHhhC-CCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccccccceEEEEE-Ecch
Q psy9399 176 LVLDEADRMLDMGFINDIEKIVDAT-PVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILF-VDDI 253 (453)
Q Consensus 176 iIiDE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 253 (453)
+|+||+|.+.+.++.. +..++..+ +...|++++|||+++.+..+.......+........... ....+.+.. ....
T Consensus 128 iViDE~h~~~~~~~~~-l~~~l~~l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 205 (358)
T TIGR01587 128 LIFDEVHFYDEYTLAL-ILAVLEVLKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEER-RFERHRFIKIESDK 205 (358)
T ss_pred EEEeCCCCCCHHHHHH-HHHHHHHHHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCcccc-ccccccceeecccc
Confidence 9999999998765433 44444333 346789999999997766665544322111111100000 001111211 1111
Q ss_pred hhHHHHHHHHHhh-CCCCcEEEEeccchhHHHHHHHHhhCCC--ceeecCCCCCHHHHHH----HHHHHhcCCccEEEEe
Q psy9399 254 LHKNRLLDYLLRD-KRVGQAVVFTATKRDADIIADRLNISGF--LAAPLHGDLHQNARNR----TLENLRRGRIKILVAT 326 (453)
Q Consensus 254 ~~~~~~~~~l~~~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~r~~----~~~~f~~g~~~vLv~T 326 (453)
..+...+..++.. ..++++||||+++++++.+++.|.+.+. .+..+||++++.+|.+ +++.|++|+..|||||
T Consensus 206 ~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT 285 (358)
T TIGR01587 206 VGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVAT 285 (358)
T ss_pred ccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEEC
Confidence 2233344444443 3467999999999999999999988665 5899999999999976 4889999999999999
Q ss_pred CCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCC----ccEEEEeChhh
Q psy9399 327 DVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRN----GFAVSLVNHAE 377 (453)
Q Consensus 327 ~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~----g~~~~~~~~~~ 377 (453)
+++++|+|++ ++.||++..| ..+|+||+||+||.|+. |.++++....+
T Consensus 286 ~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 286 QVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred cchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 9999999995 7888877665 78999999999998755 36777766544
No 61
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.1e-36 Score=311.44 Aligned_cols=307 Identities=20% Similarity=0.256 Sum_probs=229.7
Q ss_pred HHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcC
Q psy9399 26 GVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTP 105 (453)
Q Consensus 26 ~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 105 (453)
.+-.+.+..+.++.+++++|+||||||.++.+++++... .+.+++++.|
T Consensus 5 ~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-------------------------------~~~~ilvlqP 53 (819)
T TIGR01970 5 AVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-------------------------------IGGKIIMLEP 53 (819)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-------------------------------cCCeEEEEeC
Confidence 344567777878889999999999999999999987642 1458999999
Q ss_pred cHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEechhh-h
Q psy9399 106 TRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADR-M 184 (453)
Q Consensus 106 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h~-~ 184 (453)
+++++.|+++.+...........+.....+.. ......+|+|+|++.|.+.+... ..+.++++|||||+|. .
T Consensus 54 rR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~ 126 (819)
T TIGR01970 54 RRLAARSAAQRLASQLGEAVGQTVGYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERS 126 (819)
T ss_pred cHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhh
Confidence 99999999998865432221234444433332 22345789999999999988764 4689999999999994 6
Q ss_pred cccCChHH-HHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccccccceEEEEEEcchhhH----HHH
Q psy9399 185 LDMGFIND-IEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHK----NRL 259 (453)
Q Consensus 185 ~~~~~~~~-~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 259 (453)
++.++.-. +..+...++...|+|+||||++... + ..++.++..+...... ..+.+.+......... ...
T Consensus 127 L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~~--l-~~~l~~~~vI~~~gr~---~pVe~~y~~~~~~~~~~~~v~~~ 200 (819)
T TIGR01970 127 LDADLGLALALDVQSSLREDLKILAMSATLDGER--L-SSLLPDAPVVESEGRS---FPVEIRYLPLRGDQRLEDAVSRA 200 (819)
T ss_pred hccchHHHHHHHHHHhcCCCceEEEEeCCCCHHH--H-HHHcCCCcEEEecCcc---eeeeeEEeecchhhhHHHHHHHH
Confidence 66665433 3445556778889999999998643 2 3455554444433211 2244444433222111 122
Q ss_pred HHHHHhhCCCCcEEEEeccchhHHHHHHHHhh---CCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCC
Q psy9399 260 LDYLLRDKRVGQAVVFTATKRDADIIADRLNI---SGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVP 336 (453)
Q Consensus 260 ~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~ 336 (453)
+..++.. ..+.+|||+++..+++.+++.|.. .++.+..+||+|++++|.++++.|++|+.+|||||+++++|+|+|
T Consensus 201 l~~~l~~-~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp 279 (819)
T TIGR01970 201 VEHALAS-ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIE 279 (819)
T ss_pred HHHHHHh-cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhccccc
Confidence 3333333 357899999999999999999987 478899999999999999999999999999999999999999999
Q ss_pred CCcEEEEcCCCC------------------ChhHHHHHhhhccCCCCCccEEEEeChhhH
Q psy9399 337 AITHVFNYDLPK------------------FPEDYVHRIGRTGRAGRNGFAVSLVNHAER 378 (453)
Q Consensus 337 ~~~~Vi~~~~~~------------------~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 378 (453)
++++||+++.+. |..++.||+||+||. .+|.||.+++..+.
T Consensus 280 ~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~ 338 (819)
T TIGR01970 280 GIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQH 338 (819)
T ss_pred CceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHH
Confidence 999999999874 234689999999999 89999999998754
No 62
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=1.8e-36 Score=326.44 Aligned_cols=323 Identities=19% Similarity=0.225 Sum_probs=240.6
Q ss_pred HHHHHHHh-CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhh
Q psy9399 11 LVLKALVK-VGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKE 89 (453)
Q Consensus 11 ~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (453)
++.+.+++ +|+ +|++.|+++++.++.++++++.||||+|||+.++++++....
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~------------------------- 120 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL------------------------- 120 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh-------------------------
Confidence 34556666 899 699999999999999999999999999999966655544321
Q ss_pred hcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccC-CeeEEEEECCCchHHHHH---Hhc-CCCCEEEeChHHHHHHHh
Q psy9399 90 RLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMK-KIKAISILGGMPYLRQMQ---LLS-RNPEILLATPGRLIDHMN 164 (453)
Q Consensus 90 ~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~-~~~~Ilv~T~~~l~~~l~ 164 (453)
.+.++||++||++|+.|+.+.+..++...+ .+.+..++|+....++.. .+. +.++|+|+||+.|.+.+.
T Consensus 121 ------~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~ 194 (1638)
T PRK14701 121 ------KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFP 194 (1638)
T ss_pred ------cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHH
Confidence 255899999999999999999999876542 367778888887665432 233 358999999999987665
Q ss_pred cCCCCCCCccEEEEechhhhcc-----------cCChHHHHH----HHh----------------------hCCCCcc-E
Q psy9399 165 SGKINFSHLQILVLDEADRMLD-----------MGFINDIEK----IVD----------------------ATPVTRQ-T 206 (453)
Q Consensus 165 ~~~~~~~~~~~iIiDE~h~~~~-----------~~~~~~~~~----~~~----------------------~~~~~~~-~ 206 (453)
... ..+++++|+||||+++. .+|...+.. ++. .++...| +
T Consensus 195 ~l~--~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l 272 (1638)
T PRK14701 195 EMK--HLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCL 272 (1638)
T ss_pred HHh--hCCCCEEEEECceeccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEE
Confidence 321 26789999999999986 356555543 221 2344445 6
Q ss_pred EEEEeecChHHHHHHHhhcCCCeEEEecccccccccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchh---HH
Q psy9399 207 MLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRD---AD 283 (453)
Q Consensus 207 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~---~~ 283 (453)
+++|||.++.-. .. .++.++..+.+........++.+.++..... .+ ..+..+++.. +.++||||++++. |+
T Consensus 273 l~~SAT~~~r~~-~~-~l~~~~l~f~v~~~~~~lr~i~~~yi~~~~~-~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae 347 (1638)
T PRK14701 273 IVASATGKAKGD-RV-KLYRELLGFEVGSGRSALRNIVDVYLNPEKI-IK-EHVRELLKKL-GKGGLIFVPIDEGAEKAE 347 (1638)
T ss_pred EEEecCCCchhH-HH-HHhhcCeEEEecCCCCCCCCcEEEEEECCHH-HH-HHHHHHHHhC-CCCeEEEEeccccchHHH
Confidence 779999885311 11 2335566666655544556677776655332 23 3444555544 4689999999875 58
Q ss_pred HHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEe----CCcccCCCCCC-CcEEEEcCCCC---ChhHHHH
Q psy9399 284 IIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVAT----DVAARGIDVPA-ITHVFNYDLPK---FPEDYVH 355 (453)
Q Consensus 284 ~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T----~~~~~Gvdi~~-~~~Vi~~~~~~---~~~~~~Q 355 (453)
.+++.|...|+++..+||+ |...++.|++|+++||||| +++++|+|+|+ +++||+++.|+ +...|.|
T Consensus 348 ~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~ 422 (1638)
T PRK14701 348 EIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDP 422 (1638)
T ss_pred HHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhccc
Confidence 9999999999999999996 8899999999999999999 58999999998 99999999998 7665555
Q ss_pred Hh-------------hhccCCCCCccEEEEeChhh
Q psy9399 356 RI-------------GRTGRAGRNGFAVSLVNHAE 377 (453)
Q Consensus 356 ~~-------------GR~~R~g~~g~~~~~~~~~~ 377 (453)
.. ||++|.|..+.++......+
T Consensus 423 ~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~ 457 (1638)
T PRK14701 423 TIYRILGLLSEILKIEEELKEGIPIEGVLDVFPED 457 (1638)
T ss_pred chhhhhcchHHHHHhhhhcccCCcchhHHHhHHHH
Confidence 44 99999998877764433333
No 63
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=3.5e-36 Score=308.50 Aligned_cols=307 Identities=19% Similarity=0.259 Sum_probs=228.3
Q ss_pred HHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcC
Q psy9399 26 GVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTP 105 (453)
Q Consensus 26 ~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 105 (453)
.+-.+.+.++.+++++++.||||||||.++.+++++... ..++++++.|
T Consensus 8 ~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~-------------------------------~~~~ilvlqP 56 (812)
T PRK11664 8 AVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG-------------------------------INGKIIMLEP 56 (812)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC-------------------------------cCCeEEEECC
Confidence 344567777878889999999999999999998886522 1348999999
Q ss_pred cHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEechhh-h
Q psy9399 106 TRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADR-M 184 (453)
Q Consensus 106 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h~-~ 184 (453)
+++++.|+++.+.+......+..+....++... .....+|+|+|++.|.+.+... ..+.++++|||||+|. .
T Consensus 57 rR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~------~~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~ 129 (812)
T PRK11664 57 RRLAARNVAQRLAEQLGEKPGETVGYRMRAESK------VGPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERS 129 (812)
T ss_pred hHHHHHHHHHHHHHHhCcccCceEEEEecCccc------cCCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccc
Confidence 999999999988654322223455555555432 1234689999999999988764 4689999999999996 3
Q ss_pred cccCC-hHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccccccceEEEEEEcchhhHH----HH
Q psy9399 185 LDMGF-INDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKN----RL 259 (453)
Q Consensus 185 ~~~~~-~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 259 (453)
.+.++ ...+..+...++...|+++||||++.. .+ ..++.++..+..... ...+.+.+.......... ..
T Consensus 130 l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~~--~l-~~~~~~~~~I~~~gr---~~pV~~~y~~~~~~~~~~~~v~~~ 203 (812)
T PRK11664 130 LQADLALALLLDVQQGLRDDLKLLIMSATLDND--RL-QQLLPDAPVIVSEGR---SFPVERRYQPLPAHQRFDEAVARA 203 (812)
T ss_pred cccchHHHHHHHHHHhCCccceEEEEecCCCHH--HH-HHhcCCCCEEEecCc---cccceEEeccCchhhhHHHHHHHH
Confidence 44332 222334556677788999999999853 23 345554444443321 123444444332221111 12
Q ss_pred HHHHHhhCCCCcEEEEeccchhHHHHHHHHhh---CCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCC
Q psy9399 260 LDYLLRDKRVGQAVVFTATKRDADIIADRLNI---SGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVP 336 (453)
Q Consensus 260 ~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~ 336 (453)
+..++.. ..+.+|||++++.+++.+++.|.. .++.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|
T Consensus 204 l~~~l~~-~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp 282 (812)
T PRK11664 204 TAELLRQ-ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIE 282 (812)
T ss_pred HHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhccccc
Confidence 3333433 357899999999999999999986 578899999999999999999999999999999999999999999
Q ss_pred CCcEEEEcCCCC------------------ChhHHHHHhhhccCCCCCccEEEEeChhhH
Q psy9399 337 AITHVFNYDLPK------------------FPEDYVHRIGRTGRAGRNGFAVSLVNHAER 378 (453)
Q Consensus 337 ~~~~Vi~~~~~~------------------~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 378 (453)
++++||+.+.+. |..++.||+||+||. .+|.||.++++.+.
T Consensus 283 ~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 283 GIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred CceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 999999988764 335799999999998 69999999998754
No 64
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=7.2e-36 Score=306.60 Aligned_cols=349 Identities=22% Similarity=0.300 Sum_probs=261.2
Q ss_pred CHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhh
Q psy9399 9 HELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHK 88 (453)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (453)
...+..++.+.|+..|+.+|.+|+..+.+|++++|..|||||||++|++|+++.+.+..
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~--------------------- 114 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP--------------------- 114 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc---------------------
Confidence 44567888888999999999999999999999999999999999999999999998743
Q ss_pred hhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccC-CeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCC
Q psy9399 89 ERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMK-KIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGK 167 (453)
Q Consensus 89 ~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~ 167 (453)
..++|+|.||++|+..+.++++++....+ .+....++|.....+......+.++|++|||++|...+....
T Consensus 115 --------~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~ 186 (851)
T COG1205 115 --------SARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNH 186 (851)
T ss_pred --------CccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCc
Confidence 33899999999999999999999887666 678888888888777777888899999999999977554432
Q ss_pred ----CCCCCccEEEEechhhhcccCChHHHH-------HHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEeccc
Q psy9399 168 ----INFSHLQILVLDEADRMLDMGFINDIE-------KIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236 (453)
Q Consensus 168 ----~~~~~~~~iIiDE~h~~~~~~~~~~~~-------~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 236 (453)
..++++++||+||+|.+-.. ++..+. .++...+...|+|++|||+.+..+ +...+.+......+...
T Consensus 187 ~~~~~~~~~Lk~lVvDElHtYrGv-~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e-~~~~l~~~~f~~~v~~~ 264 (851)
T COG1205 187 DAWLWLLRNLKYLVVDELHTYRGV-QGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGE-FAEELFGRDFEVPVDED 264 (851)
T ss_pred chHHHHHhcCcEEEEecceecccc-chhHHHHHHHHHHHHHhccCCCceEEEEeccccChHH-HHHHhcCCcceeeccCC
Confidence 22577999999999976432 333333 333344567899999999976444 44445555544433222
Q ss_pred ccccccceEEEEEEcc--------hhhHHHHHHHHHhh--CCCCcEEEEeccchhHHHHH----HHHhhCC----Cceee
Q psy9399 237 EKKQKNITQSILFVDD--------ILHKNRLLDYLLRD--KRVGQAVVFTATKRDADIIA----DRLNISG----FLAAP 298 (453)
Q Consensus 237 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~--~~~~~~lvf~~~~~~~~~l~----~~L~~~~----~~~~~ 298 (453)
... ..........+. ..........+... ..+-++|+|+.++..++.++ +.+...+ ..+..
T Consensus 265 g~~-~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~ 343 (851)
T COG1205 265 GSP-RGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVST 343 (851)
T ss_pred CCC-CCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheee
Confidence 222 222222222220 01122222222222 34579999999999999997 4444444 56889
Q ss_pred cCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCC-ChhHHHHHhhhccCCCCCccEEEEeCh--
Q psy9399 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPK-FPEDYVHRIGRTGRAGRNGFAVSLVNH-- 375 (453)
Q Consensus 299 ~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~-~~~~~~Q~~GR~~R~g~~g~~~~~~~~-- 375 (453)
+++++..++|.+++..|++|+..++++|.+++-|+|+.+++.||....|. +..++.|++||+||.++.+..+.....
T Consensus 344 ~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~ 423 (851)
T COG1205 344 YRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDP 423 (851)
T ss_pred ccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCc
Confidence 99999999999999999999999999999999999999999999999999 899999999999999877666555542
Q ss_pred hhHHHHHHHHHHhh
Q psy9399 376 AERMNIKKIERFTK 389 (453)
Q Consensus 376 ~~~~~~~~~~~~~~ 389 (453)
-+.++...-..+.+
T Consensus 424 ~d~yy~~~p~~~~~ 437 (851)
T COG1205 424 LDSYYLRHPEELLE 437 (851)
T ss_pred cchhhhhCcHhhhh
Confidence 23444443344443
No 65
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=5.2e-35 Score=306.49 Aligned_cols=322 Identities=23% Similarity=0.311 Sum_probs=233.5
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceE
Q psy9399 21 YTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRM 100 (453)
Q Consensus 21 ~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (453)
.-++++||++++..++.+ ++++++|||+|||+++++++...+.. .+.++
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~------------------------------~~~~v 61 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK------------------------------KGGKV 61 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh------------------------------CCCeE
Confidence 347999999999988876 89999999999999998888876632 24589
Q ss_pred EEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEec
Q psy9399 101 LVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180 (453)
Q Consensus 101 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE 180 (453)
||++|+++|+.|+.+.+..+.... ...+..++|+........ ...+.+|+|+||+.+...+..+...+.++++|||||
T Consensus 62 Lvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~g~~~~~~r~~-~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDE 139 (773)
T PRK13766 62 LILAPTKPLVEQHAEFFRKFLNIP-EEKIVVFTGEVSPEKRAE-LWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDE 139 (773)
T ss_pred EEEeCcHHHHHHHHHHHHHHhCCC-CceEEEEeCCCCHHHHHH-HHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEEC
Confidence 999999999999999999876432 246677777766554333 334579999999999888888888889999999999
Q ss_pred hhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHH---HHHHhhcCCCeEEEeccc--------------------c
Q psy9399 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVG---NMAENITKDPLILKVNSI--------------------E 237 (453)
Q Consensus 181 ~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~---~~~~~~~~~~~~~~~~~~--------------------~ 237 (453)
||++........+...+.......+++++||||..... .....+......+..... +
T Consensus 140 aH~~~~~~~~~~i~~~~~~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~ 219 (773)
T PRK13766 140 AHRAVGNYAYVYIAERYHEDAKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPE 219 (773)
T ss_pred CccccccccHHHHHHHHHhcCCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcH
Confidence 99987554333344444334445679999999843221 122211111000000000 0
Q ss_pred -------------------------c--cc------------ccceEEE-------------------------------
Q psy9399 238 -------------------------K--KQ------------KNITQSI------------------------------- 247 (453)
Q Consensus 238 -------------------------~--~~------------~~~~~~~------------------------------- 247 (453)
. .. ..+...+
T Consensus 220 ~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 299 (773)
T PRK13766 220 ELKEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQG 299 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 0 00 0000000
Q ss_pred ----------------------------------------EEEcchhhHHHHHHHHHh----hCCCCcEEEEeccchhHH
Q psy9399 248 ----------------------------------------LFVDDILHKNRLLDYLLR----DKRVGQAVVFTATKRDAD 283 (453)
Q Consensus 248 ----------------------------------------~~~~~~~~~~~~~~~l~~----~~~~~~~lvf~~~~~~~~ 283 (453)
........+...+..+++ ...++++||||++++.++
T Consensus 300 ~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~ 379 (773)
T PRK13766 300 VEALRRYLERLREEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAE 379 (773)
T ss_pred HHHHHHHHHHHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHH
Confidence 000000112222223332 256789999999999999
Q ss_pred HHHHHHhhCCCceeecCCC--------CCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHH
Q psy9399 284 IIADRLNISGFLAAPLHGD--------LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVH 355 (453)
Q Consensus 284 ~l~~~L~~~~~~~~~~~~~--------~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q 355 (453)
.+++.|...++.+..+||. |++.+|..+++.|++|+.+|||+|+++++|+|+|++++||++|+|++...|+|
T Consensus 380 ~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQ 459 (773)
T PRK13766 380 KIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQ 459 (773)
T ss_pred HHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHH
Confidence 9999999889988888876 89999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCCCCccEEEEeChh
Q psy9399 356 RIGRTGRAGRNGFAVSLVNHA 376 (453)
Q Consensus 356 ~~GR~~R~g~~g~~~~~~~~~ 376 (453)
|+||+||.+. |.+++++...
T Consensus 460 R~GR~gR~~~-~~v~~l~~~~ 479 (773)
T PRK13766 460 RKGRTGRQEE-GRVVVLIAKG 479 (773)
T ss_pred HhcccCcCCC-CEEEEEEeCC
Confidence 9999999855 7888887654
No 66
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=5.7e-35 Score=296.83 Aligned_cols=338 Identities=20% Similarity=0.261 Sum_probs=241.9
Q ss_pred CCcHHHHHHHHHHhcC---CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCce
Q psy9399 23 KPTGVQEQAIPAAISG---RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPR 99 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~~~---~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (453)
.+++.|+++++.+.++ +++++.|+||||||.+|+.++...+.. +.+
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~-------------------------------g~~ 192 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ-------------------------------GKQ 192 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc-------------------------------CCe
Confidence 5899999999999874 679999999999999999887776654 458
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHH----HHhcCCCCEEEeChHHHHHHHhcCCCCCCCccE
Q psy9399 100 MLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQM----QLLSRNPEILLATPGRLIDHMNSGKINFSHLQI 175 (453)
Q Consensus 100 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 175 (453)
+||++|+++|+.|+.+.+++.. +..+..++++....+.. ....+.++|+|+|++.++ .++.++++
T Consensus 193 vLvLvPt~~L~~Q~~~~l~~~f----g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~l 261 (679)
T PRK05580 193 ALVLVPEIALTPQMLARFRARF----GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGL 261 (679)
T ss_pred EEEEeCcHHHHHHHHHHHHHHh----CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCE
Confidence 9999999999999999998754 26788888887654433 223456799999998875 36789999
Q ss_pred EEEechhhhcccC-----C-hHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccccccceEEEEE
Q psy9399 176 LVLDEADRMLDMG-----F-INDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILF 249 (453)
Q Consensus 176 iIiDE~h~~~~~~-----~-~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (453)
||+||+|.....+ | ...+ ........+.+++++|||++........ .+....+................+.
T Consensus 262 iVvDEeh~~s~~~~~~p~y~~r~v-a~~ra~~~~~~~il~SATps~~s~~~~~--~g~~~~~~l~~r~~~~~~p~v~~id 338 (679)
T PRK05580 262 IIVDEEHDSSYKQQEGPRYHARDL-AVVRAKLENIPVVLGSATPSLESLANAQ--QGRYRLLRLTKRAGGARLPEVEIID 338 (679)
T ss_pred EEEECCCccccccCcCCCCcHHHH-HHHHhhccCCCEEEEcCCCCHHHHHHHh--ccceeEEEeccccccCCCCeEEEEe
Confidence 9999999876433 1 1222 2334445677999999998754433332 2222222222211111111112222
Q ss_pred Ecch-------hhHHHHHHHHHhh-CCCCcEEEEeccc------------------------------------------
Q psy9399 250 VDDI-------LHKNRLLDYLLRD-KRVGQAVVFTATK------------------------------------------ 279 (453)
Q Consensus 250 ~~~~-------~~~~~~~~~l~~~-~~~~~~lvf~~~~------------------------------------------ 279 (453)
.... .-...++..+.+. ..++++|||+|++
T Consensus 339 ~~~~~~~~~~~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~ 418 (679)
T PRK05580 339 MRELLRGENGSFLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQE 418 (679)
T ss_pred chhhhhhcccCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCC
Confidence 1110 0112233333332 3445899988863
Q ss_pred ------------------hhHHHHHHHHhhC--CCceeecCCCCC--HHHHHHHHHHHhcCCccEEEEeCCcccCCCCCC
Q psy9399 280 ------------------RDADIIADRLNIS--GFLAAPLHGDLH--QNARNRTLENLRRGRIKILVATDVAARGIDVPA 337 (453)
Q Consensus 280 ------------------~~~~~l~~~L~~~--~~~~~~~~~~~~--~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~ 337 (453)
..++.+++.|++. +.++..+|+++. ..++.++++.|++|+.+|||+|+++++|+|+|+
T Consensus 419 ~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~ 498 (679)
T PRK05580 419 PIPKACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPN 498 (679)
T ss_pred CCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCC
Confidence 2566778888774 778999999986 467899999999999999999999999999999
Q ss_pred CcEEEEcCCC--CC----------hhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHH-----HHHhhcCCCccccCCC
Q psy9399 338 ITHVFNYDLP--KF----------PEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKI-----ERFTKQQIPIEVINGF 400 (453)
Q Consensus 338 ~~~Vi~~~~~--~~----------~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 400 (453)
+++|+.++.+ .+ ...|.|++||+||.+..|.+++++..++...++.+ ..|+..++..+...++
T Consensus 499 v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~~~~d~~~f~~~El~~R~~~~~ 578 (679)
T PRK05580 499 VTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQALLAQDYDAFAEQELEERRAAGY 578 (679)
T ss_pred cCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCHHHHHHHhCCHHHHHHHHHHHHHhcCC
Confidence 9998665543 32 25689999999999999999999998876665544 5688999999999999
Q ss_pred Ccchh
Q psy9399 401 EPKKR 405 (453)
Q Consensus 401 ~~~~~ 405 (453)
||..+
T Consensus 579 PPf~~ 583 (679)
T PRK05580 579 PPFGR 583 (679)
T ss_pred CCHHH
Confidence 99543
No 67
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=7e-36 Score=297.10 Aligned_cols=326 Identities=18% Similarity=0.187 Sum_probs=220.8
Q ss_pred CCcHHHHHHHHHHhc-C--CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCce
Q psy9399 23 KPTGVQEQAIPAAIS-G--RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPR 99 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~~-~--~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (453)
.+|+||++++..+.. + +..++++|||+|||++.+..+... +.+
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l----------------------------------~k~ 300 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV----------------------------------KKS 300 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh----------------------------------CCC
Confidence 589999999999874 3 368999999999999877655432 237
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhc--------CCCCCC
Q psy9399 100 MLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNS--------GKINFS 171 (453)
Q Consensus 100 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~--------~~~~~~ 171 (453)
+|||||+..|+.||.+++.++..... ..+..++|+.... .....+|+|+|++++.....+ ..+.-.
T Consensus 301 tLILvps~~Lv~QW~~ef~~~~~l~~-~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~ 374 (732)
T TIGR00603 301 CLVLCTSAVSVEQWKQQFKMWSTIDD-SQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNR 374 (732)
T ss_pred EEEEeCcHHHHHHHHHHHHHhcCCCC-ceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccc
Confidence 99999999999999999999864333 4555666653321 122468999999987543221 112235
Q ss_pred CccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHH--HHHhhcCCCeEEEeccccc----ccccceE
Q psy9399 172 HLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGN--MAENITKDPLILKVNSIEK----KQKNITQ 245 (453)
Q Consensus 172 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~ 245 (453)
.+++||+||+|++....| ..++..++ ....+++||||...... ....+++ |........+. .......
T Consensus 375 ~~gLII~DEvH~lpA~~f----r~il~~l~-a~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~ 448 (732)
T TIGR00603 375 EWGLILLDEVHVVPAAMF----RRVLTIVQ-AHCKLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQC 448 (732)
T ss_pred cCCEEEEEccccccHHHH----HHHHHhcC-cCcEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceE
Confidence 789999999999865443 33444443 23579999999532111 1112222 22211111000 0000000
Q ss_pred EEEE----------------------EcchhhHHHHHHHHHhhC--CCCcEEEEeccchhHHHHHHHHhhCCCceeecCC
Q psy9399 246 SILF----------------------VDDILHKNRLLDYLLRDK--RVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301 (453)
Q Consensus 246 ~~~~----------------------~~~~~~~~~~~~~l~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~ 301 (453)
.-+. ......+...+..+++.+ .+.++||||.+...+..+++.|. +..+||
T Consensus 449 ~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G 523 (732)
T TIGR00603 449 AEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYG 523 (732)
T ss_pred EEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEEC
Confidence 0000 111223444555566544 67899999999999999999884 456899
Q ss_pred CCCHHHHHHHHHHHhcC-CccEEEEeCCcccCCCCCCCcEEEEcCCC-CChhHHHHHhhhccCCCCCccE-------EEE
Q psy9399 302 DLHQNARNRTLENLRRG-RIKILVATDVAARGIDVPAITHVFNYDLP-KFPEDYVHRIGRTGRAGRNGFA-------VSL 372 (453)
Q Consensus 302 ~~~~~~r~~~~~~f~~g-~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~-~~~~~~~Q~~GR~~R~g~~g~~-------~~~ 372 (453)
+++..+|.++++.|++| .+++||+|+++.+|+|+|++++||+++.| .|..+|+||+||++|.+..|.+ |.+
T Consensus 524 ~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~l 603 (732)
T TIGR00603 524 PTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSL 603 (732)
T ss_pred CCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEE
Confidence 99999999999999975 78999999999999999999999999987 5999999999999998766553 777
Q ss_pred eChhhHH--HHHHHHHH-hhcCCCccccCC
Q psy9399 373 VNHAERM--NIKKIERF-TKQQIPIEVING 399 (453)
Q Consensus 373 ~~~~~~~--~~~~~~~~-~~~~~~~~~~~~ 399 (453)
++..+.+ +..+-++| .++....+.+..
T Consensus 604 Vs~dT~E~~~s~~Rq~fl~~qGY~~~vi~~ 633 (732)
T TIGR00603 604 VSKDTQEMYYSTKRQRFLVDQGYSFKVITH 633 (732)
T ss_pred ecCCchHHHHHHHHHHHHHHCCCeeEEEec
Confidence 7765433 33334444 566666666443
No 68
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=4.8e-35 Score=287.89 Aligned_cols=320 Identities=19% Similarity=0.183 Sum_probs=239.7
Q ss_pred hCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCC
Q psy9399 18 KVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ 97 (453)
Q Consensus 18 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (453)
.+|+ .|+++|..+++.++.|+ +..+.||+|||+++.+|++..... +
T Consensus 99 ~lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~-------------------------------G 144 (656)
T PRK12898 99 VLGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA-------------------------------G 144 (656)
T ss_pred HhCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc-------------------------------C
Confidence 3688 59999999999999998 999999999999999999987554 5
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHH-HHHHhcCCC--------
Q psy9399 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRL-IDHMNSGKI-------- 168 (453)
Q Consensus 98 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~~~-------- 168 (453)
..++|++||++|+.|.++++..+....+ +.++.++|+.... .+....+++|+++|...| +++|+.+..
T Consensus 145 ~~v~VvTptreLA~qdae~~~~l~~~lG-lsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~ 221 (656)
T PRK12898 145 LPVHVITVNDYLAERDAELMRPLYEALG-LTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDA 221 (656)
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHHhhcC-CEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccch
Confidence 6899999999999999999999887765 9999999997643 334445789999999887 666654311
Q ss_pred -----------------CCCCccEEEEechhhhc-ccC-----------------ChH----------------------
Q psy9399 169 -----------------NFSHLQILVLDEADRML-DMG-----------------FIN---------------------- 191 (453)
Q Consensus 169 -----------------~~~~~~~iIiDE~h~~~-~~~-----------------~~~---------------------- 191 (453)
..+.+.++|+||+|.++ |.. ++.
T Consensus 222 ~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~ 301 (656)
T PRK12898 222 RLALESLHGRSSRSTQLLLRGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEK 301 (656)
T ss_pred hhhhhhhccccCchhhhcccccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCC
Confidence 13557899999999643 100 000
Q ss_pred ----------HHHHHH------------------hhC-------------------------------------------
Q psy9399 192 ----------DIEKIV------------------DAT------------------------------------------- 200 (453)
Q Consensus 192 ----------~~~~~~------------------~~~------------------------------------------- 200 (453)
.++.++ .++
T Consensus 302 ~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQai 381 (656)
T PRK12898 302 RIELTEAGRARIAELAESLPPAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMI 381 (656)
T ss_pred eEEEcHHHHHHHHHHhCcchhhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHH
Confidence 000000 000
Q ss_pred ------------------------CCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccccccceEEEEEEcchhhH
Q psy9399 201 ------------------------PVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHK 256 (453)
Q Consensus 201 ------------------------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (453)
+...++.+||||.+.....+...+..++..+....... ....+.++..+ ...+
T Consensus 382 eaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~--r~~~~~~v~~t-~~~K 458 (656)
T PRK12898 382 EAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQ--RRHLPDEVFLT-AAAK 458 (656)
T ss_pred HHhcCCCCCcCceeeeeehHHHHHHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCcc--ceecCCEEEeC-HHHH
Confidence 00116889999998877778777777766555443221 11222233333 3444
Q ss_pred HHHHHHHHhh--CCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCC
Q psy9399 257 NRLLDYLLRD--KRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGID 334 (453)
Q Consensus 257 ~~~~~~l~~~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvd 334 (453)
...+..++.. ..+.++||||+|++.++.+++.|...|+++..+||+++. |+..+..|..+...|+|||+++++|+|
T Consensus 459 ~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgRGtD 536 (656)
T PRK12898 459 WAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGRGTD 536 (656)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhcccC
Confidence 4444444433 235789999999999999999999999999999999654 455555566666689999999999999
Q ss_pred CC---CCc-----EEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHH
Q psy9399 335 VP---AIT-----HVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERM 379 (453)
Q Consensus 335 i~---~~~-----~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 379 (453)
++ ++. +||+++.|.+...|.||+||+||.|++|.++.+++..|.-
T Consensus 537 I~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~l 589 (656)
T PRK12898 537 IKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDL 589 (656)
T ss_pred cCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhHHH
Confidence 99 665 8999999999999999999999999999999999987653
No 69
>KOG0952|consensus
Probab=100.00 E-value=8.8e-36 Score=293.97 Aligned_cols=364 Identities=18% Similarity=0.236 Sum_probs=252.2
Q ss_pred hCCCCCCcHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCC
Q psy9399 18 KVGYTKPTGVQEQAIPAAISG-RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPA 96 (453)
Q Consensus 18 ~~~~~~~~~~Q~~~~~~~~~~-~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (453)
-+++..++.+|.+++|.+++. .|.+||||||||||-++++.+++.+..... ...+...
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~---------------------~~~i~k~ 163 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEE---------------------QGDIAKD 163 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhcc---------------------ccccccC
Confidence 368889999999999999865 579999999999999999999998876322 2233445
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCC---CCCCCc
Q psy9399 97 QPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGK---INFSHL 173 (453)
Q Consensus 97 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~---~~~~~~ 173 (453)
.-+++||+|+++||.++.+.+.+-....+ +.+..++|+....... -..++|+|+||+++--.-++.. ..+..+
T Consensus 164 ~fKiVYIaPmKALa~Em~~~~~kkl~~~g-i~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V 239 (1230)
T KOG0952|consen 164 DFKIVYIAPMKALAAEMVDKFSKKLAPLG-ISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLV 239 (1230)
T ss_pred CceEEEEechHHHHHHHHHHHhhhccccc-ceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhhe
Confidence 67999999999999998887766554444 8999999998876654 2357999999999743222221 235778
Q ss_pred cEEEEechhhhcccCChHHHHHHHhhC-------CCCccEEEEEeecChHHHHHHHhhcCCCe-EEEecccccccccceE
Q psy9399 174 QILVLDEADRMLDMGFINDIEKIVDAT-------PVTRQTMLFSATLDGIVGNMAENITKDPL-ILKVNSIEKKQKNITQ 245 (453)
Q Consensus 174 ~~iIiDE~h~~~~~~~~~~~~~~~~~~-------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 245 (453)
++||+||+|.+-+. .+..++.++... ....+++++|||+|+. .+.+.++.-++. -+........+..+.+
T Consensus 240 ~LviIDEVHlLhd~-RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~-eDvA~fL~vn~~~glfsFd~~yRPvpL~~ 317 (1230)
T KOG0952|consen 240 RLVIIDEVHLLHDD-RGPVLETIVARTLRLVESSQSMIRIVGLSATLPNY-EDVARFLRVNPYAGLFSFDQRYRPVPLTQ 317 (1230)
T ss_pred eeEEeeeehhhcCc-ccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCH-HHHHHHhcCCCccceeeecccccccceee
Confidence 99999999977654 466666665543 4556899999999874 445554444322 1111111112122333
Q ss_pred EEEEEcch--hhHHHHHHH-----HHh-hCCCCcEEEEeccchhHHHHHHHHhhC----C-------------------C
Q psy9399 246 SILFVDDI--LHKNRLLDY-----LLR-DKRVGQAVVFTATKRDADIIADRLNIS----G-------------------F 294 (453)
Q Consensus 246 ~~~~~~~~--~~~~~~~~~-----l~~-~~~~~~~lvf~~~~~~~~~l~~~L~~~----~-------------------~ 294 (453)
.++-.... .......+. +.+ ...+.+++|||.++..+.+.++.|.+. | .
T Consensus 318 ~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~ 397 (1230)
T KOG0952|consen 318 GFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQ 397 (1230)
T ss_pred eEEeeecccchhhhhhHHHHHHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHh
Confidence 33322211 111111111 111 256689999999999999988888531 1 2
Q ss_pred ceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEE----cCCC------CChhHHHHHhhhccCCC
Q psy9399 295 LAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFN----YDLP------KFPEDYVHRIGRTGRAG 364 (453)
Q Consensus 295 ~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~----~~~~------~~~~~~~Q~~GR~~R~g 364 (453)
...++|++|...+|..+.+.|..|.++||+||.+++.|+|+|.-.++|- +|.. .+.-+.+|.+|||||.+
T Consensus 398 g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPq 477 (1230)
T KOG0952|consen 398 GMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQ 477 (1230)
T ss_pred hhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCC
Confidence 2678999999999999999999999999999999999999987555553 2222 24567899999999985
Q ss_pred CC--ccEEEEeChhhH---------------HHHHHHHHHhhcCCCccccCCCCcchhhhh
Q psy9399 365 RN--GFAVSLVNHAER---------------MNIKKIERFTKQQIPIEVINGFEPKKRIRT 408 (453)
Q Consensus 365 ~~--g~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (453)
-+ |.+++.++.... .....+.+.++.++....+.+.+....+..
T Consensus 478 Fd~~G~giIiTt~dkl~~Y~sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~ 538 (1230)
T KOG0952|consen 478 FDSSGEGIIITTRDKLDHYESLLTGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLK 538 (1230)
T ss_pred CCCCceEEEEecccHHHHHHHHHcCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhh
Confidence 44 888888776532 223455566667776666666655555444
No 70
>KOG0352|consensus
Probab=100.00 E-value=3.4e-36 Score=270.31 Aligned_cols=334 Identities=22% Similarity=0.284 Sum_probs=239.3
Q ss_pred HHHHHHHHh-CCCCCC-cHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchh
Q psy9399 10 ELVLKALVK-VGYTKP-TGVQEQAIPAAISG-RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYT 86 (453)
Q Consensus 10 ~~~~~~l~~-~~~~~~-~~~Q~~~~~~~~~~-~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (453)
..+.++|++ +|+..+ ++.|+.|+..+..+ .++.|++|||+||+++|.+|++-.
T Consensus 5 r~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~------------------------ 60 (641)
T KOG0352|consen 5 RKVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH------------------------ 60 (641)
T ss_pred HHHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh------------------------
Confidence 457888888 788876 69999999998766 689999999999999999999864
Q ss_pred hhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHh------cCCCCEEEeChHHHH
Q psy9399 87 HKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLL------SRNPEILLATPGRLI 160 (453)
Q Consensus 87 ~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~Ilv~T~~~l~ 160 (453)
++-++|+.|..+|+..+.+.+.++. +.+..+.......+..+.+ .....++..||++-.
T Consensus 61 ----------~gITIV~SPLiALIkDQiDHL~~LK-----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AA 125 (641)
T KOG0352|consen 61 ----------GGITIVISPLIALIKDQIDHLKRLK-----VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAA 125 (641)
T ss_pred ----------CCeEEEehHHHHHHHHHHHHHHhcC-----CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhh
Confidence 4478999999999988888887764 4444444433333332222 224568999998732
Q ss_pred H----HHhcCCCCCCCccEEEEechhhhcccC--ChHHHHHHHhh--CCCCccEEEEEeecChHHHHHHHh--hcCCCeE
Q psy9399 161 D----HMNSGKINFSHLQILVLDEADRMLDMG--FINDIEKIVDA--TPVTRQTMLFSATLDGIVGNMAEN--ITKDPLI 230 (453)
Q Consensus 161 ~----~l~~~~~~~~~~~~iIiDE~h~~~~~~--~~~~~~~~~~~--~~~~~~~i~~SAT~~~~~~~~~~~--~~~~~~~ 230 (453)
. -+.+.-..-..+.++|+||+|..+.|+ |..+...+-.. .-.....+++|||.+..++.-... -+.+|+.
T Consensus 126 t~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVA 205 (641)
T KOG0352|consen 126 TDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVA 205 (641)
T ss_pred hhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHH
Confidence 2 121211123457899999999999887 55554444322 123456899999998766543322 2344432
Q ss_pred EEecccccccccceEEEEEEcchhhHHHHHHHHHhh-------------CCCCcEEEEeccchhHHHHHHHHhhCCCcee
Q psy9399 231 LKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRD-------------KRVGQAVVFTATKRDADIIADRLNISGFLAA 297 (453)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------------~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~ 297 (453)
+-. .+....++................+..+... ...+-.||+|.|+++|+.++-.|...|++..
T Consensus 206 iFk--TP~FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~ 283 (641)
T KOG0352|consen 206 IFK--TPTFRDNLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAM 283 (641)
T ss_pred hcc--CcchhhhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchH
Confidence 211 1111122211100000001111111111111 1224579999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhh
Q psy9399 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAE 377 (453)
Q Consensus 298 ~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 377 (453)
.+|+++...+|..+.+.|.++++.||++|..+++|||-|+|+.||+++++.++.-|.|-.||+||.|...+|-++++..|
T Consensus 284 AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D 363 (641)
T KOG0352|consen 284 AYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQD 363 (641)
T ss_pred HHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHH
Q psy9399 378 RMNIKKI 384 (453)
Q Consensus 378 ~~~~~~~ 384 (453)
...+..+
T Consensus 364 ~~~i~FL 370 (641)
T KOG0352|consen 364 KNALNFL 370 (641)
T ss_pred hHHHHHH
Confidence 7766554
No 71
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=1.1e-34 Score=274.76 Aligned_cols=290 Identities=17% Similarity=0.215 Sum_probs=197.1
Q ss_pred HHHHHHHHHhcCCc--EEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEc
Q psy9399 27 VQEQAIPAAISGRD--LIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLT 104 (453)
Q Consensus 27 ~Q~~~~~~~~~~~~--~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 104 (453)
+|.++++++.++++ ++++||||||||.++++|++.. ..+++|++
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~----------------------------------~~~~~~~~ 46 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG----------------------------------ENDTIALY 46 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc----------------------------------CCCEEEEe
Confidence 59999999998874 7899999999999999998842 23689999
Q ss_pred CcHHHHHHHHHHHHHHhccc---CCeeEEEEECCCchH--HH------------------HHHhcCCCCEEEeChHHHHH
Q psy9399 105 PTRELALQVTAATERYGLYM---KKIKAISILGGMPYL--RQ------------------MQLLSRNPEILLATPGRLID 161 (453)
Q Consensus 105 P~~~L~~q~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~------------------~~~~~~~~~Ilv~T~~~l~~ 161 (453)
|+++|+.|+.+.+..+.... ....+..+.|..... .. .......++|++|||+.|..
T Consensus 47 P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~ 126 (357)
T TIGR03158 47 PTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVY 126 (357)
T ss_pred ChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHH
Confidence 99999999999988876432 134455555531111 00 01113467899999999876
Q ss_pred HHhcCC-----C---CCCCccEEEEechhhhcccCCh-----HHHHHHHhhCCCCccEEEEEeecChHHHHHHHhh--cC
Q psy9399 162 HMNSGK-----I---NFSHLQILVLDEADRMLDMGFI-----NDIEKIVDATPVTRQTMLFSATLDGIVGNMAENI--TK 226 (453)
Q Consensus 162 ~l~~~~-----~---~~~~~~~iIiDE~h~~~~~~~~-----~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~--~~ 226 (453)
.+.... . .+..+++|||||+|.+..+... -....++.......+++++|||+++.+....... .+
T Consensus 127 llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~ 206 (357)
T TIGR03158 127 LTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAG 206 (357)
T ss_pred HHhhhccCcccchhhhhcCCCEEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccC
Confidence 554311 1 2478999999999998754421 1222333333345689999999998776665543 33
Q ss_pred CCeEEEecc---cc------cc---------cccceEEEEEEcchhhHHHHH----HHHH---hhCCCCcEEEEeccchh
Q psy9399 227 DPLILKVNS---IE------KK---------QKNITQSILFVDDILHKNRLL----DYLL---RDKRVGQAVVFTATKRD 281 (453)
Q Consensus 227 ~~~~~~~~~---~~------~~---------~~~~~~~~~~~~~~~~~~~~~----~~l~---~~~~~~~~lvf~~~~~~ 281 (453)
.+....... .+ .. .+.+.+.+.. ....+...+ ..+. +...++++||||+++..
T Consensus 207 ~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~ 284 (357)
T TIGR03158 207 VKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP--APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDE 284 (357)
T ss_pred ceeeeecCcccccCCChhhhccccccccceeccceEEEEEe--CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHH
Confidence 333221111 00 00 0123333333 222222222 2222 22356799999999999
Q ss_pred HHHHHHHHhhCC--CceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhh
Q psy9399 282 ADIIADRLNISG--FLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359 (453)
Q Consensus 282 ~~~l~~~L~~~~--~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR 359 (453)
++.+++.|+..+ ..+..+||.+++.+|.+. ++.+|||||+++++|+|+|.+ +|| ++ |.+..+|+||+||
T Consensus 285 ~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR 355 (357)
T TIGR03158 285 VNRLSDLLQQQGLGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGR 355 (357)
T ss_pred HHHHHHHHhhhCCCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhccc
Confidence 999999999764 578889999999988654 378999999999999999876 555 45 7889999999999
Q ss_pred cc
Q psy9399 360 TG 361 (453)
Q Consensus 360 ~~ 361 (453)
+|
T Consensus 356 ~g 357 (357)
T TIGR03158 356 LG 357 (357)
T ss_pred CC
Confidence 86
No 72
>KOG0354|consensus
Probab=100.00 E-value=8.8e-35 Score=283.60 Aligned_cols=320 Identities=26% Similarity=0.349 Sum_probs=221.8
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEE
Q psy9399 23 KPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLV 102 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 102 (453)
.+|.||.+....++ ++|++|++|||+|||+++...+..++.. ..+.++|+
T Consensus 62 ~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw-----------------------------~p~~KiVF 111 (746)
T KOG0354|consen 62 ELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEW-----------------------------RPKGKVVF 111 (746)
T ss_pred cccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhc-----------------------------CCcceEEE
Confidence 68999999999999 9999999999999999998888888764 34579999
Q ss_pred EcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCC-CCCccEEEEech
Q psy9399 103 LTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKIN-FSHLQILVLDEA 181 (453)
Q Consensus 103 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~-~~~~~~iIiDE~ 181 (453)
++|++-|+.|+...+..++.. .......||.........+-...+|+|+||+.+.+.+..+..+ ++.+.++|||||
T Consensus 112 ~aP~~pLv~QQ~a~~~~~~~~---~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~ 188 (746)
T KOG0354|consen 112 LAPTRPLVNQQIACFSIYLIP---YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDEC 188 (746)
T ss_pred eeCCchHHHHHHHHHhhccCc---ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEccc
Confidence 999999999988666666532 4455555554433333344456799999999999988776543 588999999999
Q ss_pred hhhcc-cCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcC---C--------------------CeEEE-----
Q psy9399 182 DRMLD-MGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITK---D--------------------PLILK----- 232 (453)
Q Consensus 182 h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~---~--------------------~~~~~----- 232 (453)
|+-.. ..|...++..+..-....|++++||||............. + +..+.
T Consensus 189 Hra~kn~~Y~~Vmr~~l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~ 268 (746)
T KOG0354|consen 189 HRTSKNHPYNNIMREYLDLKNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCE 268 (746)
T ss_pred ccccccccHHHHHHHHHHhhhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhh
Confidence 98764 4455555566655545559999999996433222111100 0 00000
Q ss_pred -------------------------ecc------------cccccccc--eEE--------------------EEEEc--
Q psy9399 233 -------------------------VNS------------IEKKQKNI--TQS--------------------ILFVD-- 251 (453)
Q Consensus 233 -------------------------~~~------------~~~~~~~~--~~~--------------------~~~~~-- 251 (453)
... .+...++. .+. +..++
T Consensus 269 ~~~~~~f~~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l 348 (746)
T KOG0354|consen 269 RDIEDPFGMIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDAL 348 (746)
T ss_pred hhhhhhHHHHHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHH
Confidence 000 00000000 000 00000
Q ss_pred ----c---------------------------------------hhhHHHHH-HHH---HhhCCCCcEEEEeccchhHHH
Q psy9399 252 ----D---------------------------------------ILHKNRLL-DYL---LRDKRVGQAVVFTATKRDADI 284 (453)
Q Consensus 252 ----~---------------------------------------~~~~~~~~-~~l---~~~~~~~~~lvf~~~~~~~~~ 284 (453)
+ ...+.+.+ ..+ .......++|||+.++..|..
T Consensus 349 ~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~ 428 (746)
T KOG0354|consen 349 DYLEDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALA 428 (746)
T ss_pred hhhhhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHH
Confidence 0 00000000 001 112445689999999999999
Q ss_pred HHHHHhh---CCCceeec--------CCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHH
Q psy9399 285 IADRLNI---SGFLAAPL--------HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDY 353 (453)
Q Consensus 285 l~~~L~~---~~~~~~~~--------~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~ 353 (453)
+..+|.. .+++...+ ..+|++.++..+++.|++|+++|||||+++++|+|++.|+.||-||...++...
T Consensus 429 l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrm 508 (746)
T KOG0354|consen 429 LKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRM 508 (746)
T ss_pred HHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHH
Confidence 9999983 23332222 247999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCCCCCccEEEEeChhh
Q psy9399 354 VHRIGRTGRAGRNGFAVSLVNHAE 377 (453)
Q Consensus 354 ~Q~~GR~~R~g~~g~~~~~~~~~~ 377 (453)
+||.|| ||. +.|.+++++....
T Consensus 509 IQrrGR-gRa-~ns~~vll~t~~~ 530 (746)
T KOG0354|consen 509 VQRRGR-GRA-RNSKCVLLTTGSE 530 (746)
T ss_pred HHHhcc-ccc-cCCeEEEEEcchh
Confidence 999999 997 6688888777543
No 73
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=3.3e-34 Score=285.19 Aligned_cols=319 Identities=17% Similarity=0.179 Sum_probs=220.5
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCc
Q psy9399 19 VGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP 98 (453)
Q Consensus 19 ~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
+|+ .|++.| ++..+.-++..++.++||+|||++|++|++..... +.
T Consensus 67 lgl-rpydVQ--lig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~-------------------------------g~ 112 (762)
T TIGR03714 67 LGM-FPYDVQ--VLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT-------------------------------GK 112 (762)
T ss_pred cCC-CccHHH--HHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc-------------------------------CC
Confidence 455 455555 44444444447999999999999999998765543 44
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCc---hHHHHHHhcCCCCEEEeChHHH-HHHHhcC------CC
Q psy9399 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMP---YLRQMQLLSRNPEILLATPGRL-IDHMNSG------KI 168 (453)
Q Consensus 99 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~------~~ 168 (453)
.++|++|+++|+.|+++++..+....+ +.+....++.. .....+....+++|+++||+.| ++++... ..
T Consensus 113 ~V~VVTpn~yLA~Rdae~m~~l~~~LG-Lsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~ 191 (762)
T TIGR03714 113 GAMLVTTNDYLAKRDAEEMGPVYEWLG-LTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGK 191 (762)
T ss_pred ceEEeCCCHHHHHHHHHHHHHHHhhcC-CcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhc
Confidence 799999999999999999988877765 77777666521 2222333335789999999999 6666432 23
Q ss_pred CCCCccEEEEechhhhcc-cC---------------ChHHHHHHHhhCC-------------------------------
Q psy9399 169 NFSHLQILVLDEADRMLD-MG---------------FINDIEKIVDATP------------------------------- 201 (453)
Q Consensus 169 ~~~~~~~iIiDE~h~~~~-~~---------------~~~~~~~~~~~~~------------------------------- 201 (453)
.++.+.++|+||||.++- .. .+.....+...+.
T Consensus 192 ~~r~l~~~IVDEaDsILiDeartpliisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~ 271 (762)
T TIGR03714 192 FLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKID 271 (762)
T ss_pred ccccCcEEEEecHhhHhhccCcCCeeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCC
Confidence 467899999999998641 10 0001101111000
Q ss_pred --------------------------------------------------------------------------------
Q psy9399 202 -------------------------------------------------------------------------------- 201 (453)
Q Consensus 202 -------------------------------------------------------------------------------- 201 (453)
T Consensus 272 ~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It 351 (762)
T TIGR03714 272 NLYSEEYFELVRHINLALRAHYLFKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASIT 351 (762)
T ss_pred ccCChhhHHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeee
Confidence
Q ss_pred ------CCccEEEEEeecChHHHHHHHhhcCCCeEEEecc-cccccccceEEEEEEcchhhHHH-HHHHHHhh-CCCCcE
Q psy9399 202 ------VTRQTMLFSATLDGIVGNMAENITKDPLILKVNS-IEKKQKNITQSILFVDDILHKNR-LLDYLLRD-KRVGQA 272 (453)
Q Consensus 202 ------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~-~~~~~~ 272 (453)
...++.+||+|.......+.+.+.. .. +.++. .+.. ........+.+...+.. ++..+.+. ..+.++
T Consensus 352 ~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l-~v-~~IPt~kp~~--r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pv 427 (762)
T TIGR03714 352 YQNLFKMFNKLSGMTGTGKVAEKEFIETYSL-SV-VKIPTNKPII--RIDYPDKIYATLPEKLMATLEDVKEYHETGQPV 427 (762)
T ss_pred HHHHHhhCchhcccCCCChhHHHHHHHHhCC-CE-EEcCCCCCee--eeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCE
Confidence 0115677777765444444443322 22 22211 1111 11111122223334444 44444332 566799
Q ss_pred EEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCC---------CCcEEEE
Q psy9399 273 VVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVP---------AITHVFN 343 (453)
Q Consensus 273 lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~---------~~~~Vi~ 343 (453)
||||++++.++.+++.|...|+++..+||++.+.++..+...++.| .|+|||+++++|+|+| ++.+|++
T Consensus 428 LIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit 505 (762)
T TIGR03714 428 LLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGT 505 (762)
T ss_pred EEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEe
Confidence 9999999999999999999999999999999998888887777666 7999999999999999 8999999
Q ss_pred cCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHH
Q psy9399 344 YDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERM 379 (453)
Q Consensus 344 ~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 379 (453)
++.|....+ .||+||+||.|++|.++.+++..|.-
T Consensus 506 ~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~l 540 (762)
T TIGR03714 506 ERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDDL 540 (762)
T ss_pred cCCCCcHHH-HHhhhcccCCCCceeEEEEEccchhh
Confidence 999988777 99999999999999999999886653
No 74
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=4.9e-34 Score=286.71 Aligned_cols=320 Identities=16% Similarity=0.184 Sum_probs=233.2
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCc
Q psy9399 19 VGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP 98 (453)
Q Consensus 19 ~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
+|+ .|+++|..+...+..|+ +..+.||+|||+++++|++..... +.
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~-------------------------------G~ 120 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE-------------------------------GK 120 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc-------------------------------CC
Confidence 688 69999999998887765 999999999999999999866554 66
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHH-HHHHhcCC------CCCC
Q psy9399 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRL-IDHMNSGK------INFS 171 (453)
Q Consensus 99 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~~------~~~~ 171 (453)
+++|++||+.||.|.++++..+....+ +.++.+.|+.......+.. ..++|+++||+.| ++++.... ...+
T Consensus 121 ~v~VvTpt~~LA~qd~e~~~~l~~~lG-l~v~~i~g~~~~~~~r~~~-y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r 198 (790)
T PRK09200 121 GVHLITVNDYLAKRDAEEMGQVYEFLG-LTVGLNFSDIDDASEKKAI-YEADIIYTTNSELGFDYLRDNLADSKEDKVQR 198 (790)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhcC-CeEEEEeCCCCcHHHHHHh-cCCCEEEECCccccchhHHhccccchhhhccc
Confidence 899999999999999999999888776 9999999998833333332 4589999999998 66555432 2457
Q ss_pred CccEEEEechhhhc-ccC---------------ChHHHHHHHhhCCC---------------------------------
Q psy9399 172 HLQILVLDEADRML-DMG---------------FINDIEKIVDATPV--------------------------------- 202 (453)
Q Consensus 172 ~~~~iIiDE~h~~~-~~~---------------~~~~~~~~~~~~~~--------------------------------- 202 (453)
.+.++|+||+|.++ |.. ++..+..+...+..
T Consensus 199 ~~~~~IvDEaDsiLiDea~tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~ 278 (790)
T PRK09200 199 PLNYAIIDEIDSILLDEAQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLY 278 (790)
T ss_pred ccceEEEeccccceeccCCCceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCcccc
Confidence 88999999999754 110 01111111110000
Q ss_pred --------------------------------------------------------------------------------
Q psy9399 203 -------------------------------------------------------------------------------- 202 (453)
Q Consensus 203 -------------------------------------------------------------------------------- 202 (453)
T Consensus 279 ~~~~~~~~~~i~~Al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~ 358 (790)
T PRK09200 279 SLEHQVLYRHIILALRAHVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQN 358 (790)
T ss_pred ChhhhHHHHHHHHHHHHHHHhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHH
Confidence
Q ss_pred ----CccEEEEEeecChHHHHHHHhhcCCCeEEEecccccccccceEEEEEEcchhhHHHHHHHHHhh--CCCCcEEEEe
Q psy9399 203 ----TRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRD--KRVGQAVVFT 276 (453)
Q Consensus 203 ----~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~lvf~ 276 (453)
...+.+||+|....-..+.+.+..+ .. .++.. ..............+...+...+...+.. ..+.++||||
T Consensus 359 ~fr~Y~kl~GmTGTa~t~~~e~~~~Y~l~-v~-~IPt~-kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~ 435 (790)
T PRK09200 359 LFRMFPKLSGMTGTAKTEEKEFFEVYNME-VV-QIPTN-RPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGT 435 (790)
T ss_pred HHHHhHHHhccCCCChHHHHHHHHHhCCc-EE-ECCCC-CCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 0146777777654444443333222 22 22211 11111111112222334454444344332 4578999999
Q ss_pred ccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCC---CCCc-----EEEEcCCCC
Q psy9399 277 ATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDV---PAIT-----HVFNYDLPK 348 (453)
Q Consensus 277 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi---~~~~-----~Vi~~~~~~ 348 (453)
+|++.++.+++.|...|+++..+||++...++..+...++.| .|+|||+++++|+|+ |++. +||+++.|.
T Consensus 436 ~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~ 513 (790)
T PRK09200 436 GSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERME 513 (790)
T ss_pred CcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCC
Confidence 999999999999999999999999999988888888777766 799999999999999 6898 999999999
Q ss_pred ChhHHHHHhhhccCCCCCccEEEEeChhhHH
Q psy9399 349 FPEDYVHRIGRTGRAGRNGFAVSLVNHAERM 379 (453)
Q Consensus 349 ~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 379 (453)
+...|.||+||+||.|++|.++.+++..|.-
T Consensus 514 s~r~y~qr~GRtGR~G~~G~s~~~is~eD~l 544 (790)
T PRK09200 514 SRRVDLQLRGRSGRQGDPGSSQFFISLEDDL 544 (790)
T ss_pred CHHHHHHhhccccCCCCCeeEEEEEcchHHH
Confidence 9999999999999999999999999886653
No 75
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.8e-34 Score=283.12 Aligned_cols=317 Identities=19% Similarity=0.209 Sum_probs=221.4
Q ss_pred EEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy9399 42 IVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121 (453)
Q Consensus 42 lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 121 (453)
++.||||||||.+|+..+...+.. +.+++|++|+++|+.|+.+.+++..
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~-------------------------------g~~vLvlvP~i~L~~Q~~~~l~~~f 49 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL-------------------------------GKSVLVLVPEIALTPQMIQRFKYRF 49 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc-------------------------------CCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 478999999999998776665543 4589999999999999999998754
Q ss_pred cccCCeeEEEEECCCchHHHH----HHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEechhhhcccC-----Ch-H
Q psy9399 122 LYMKKIKAISILGGMPYLRQM----QLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMG-----FI-N 191 (453)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h~~~~~~-----~~-~ 191 (453)
...+..++++....+.. +......+|+|+|++.++. ++.++++|||||+|....++ |. .
T Consensus 50 ----~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf~-------p~~~l~lIIVDEeh~~sykq~~~p~y~ar 118 (505)
T TIGR00595 50 ----GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALFL-------PFKNLGLIIVDEEHDSSYKQEEGPRYHAR 118 (505)
T ss_pred ----CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHcC-------cccCCCEEEEECCCccccccccCCCCcHH
Confidence 24567778776654432 2233467999999998753 68899999999999877443 11 2
Q ss_pred HHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccccccceEEEEEEcchh----hHHHHHHHHHhh-
Q psy9399 192 DIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDIL----HKNRLLDYLLRD- 266 (453)
Q Consensus 192 ~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~- 266 (453)
.+. .......+.++|++||||+....... ..+....+...............++...... -...++..+.+.
T Consensus 119 ~~a-~~ra~~~~~~vil~SATPsles~~~~--~~g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l 195 (505)
T TIGR00595 119 DVA-VYRAKKFNCPVVLGSATPSLESYHNA--KQKAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTL 195 (505)
T ss_pred HHH-HHHHHhcCCCEEEEeCCCCHHHHHHH--hcCCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHH
Confidence 232 33334456789999999875433322 2222222222211111111112222221111 112334444333
Q ss_pred CCCCcEEEEeccchh------------------------------------------------------------HHHHH
Q psy9399 267 KRVGQAVVFTATKRD------------------------------------------------------------ADIIA 286 (453)
Q Consensus 267 ~~~~~~lvf~~~~~~------------------------------------------------------------~~~l~ 286 (453)
..++++|||+|++.. +++++
T Consensus 196 ~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~ 275 (505)
T TIGR00595 196 AAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVE 275 (505)
T ss_pred HcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHH
Confidence 344689999887632 57788
Q ss_pred HHHhhC--CCceeecCCCCCHHHH--HHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCC--CC----------h
Q psy9399 287 DRLNIS--GFLAAPLHGDLHQNAR--NRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLP--KF----------P 350 (453)
Q Consensus 287 ~~L~~~--~~~~~~~~~~~~~~~r--~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~--~~----------~ 350 (453)
+.|++. +.++..+|++++...+ .++++.|++|+.+|||+|+++++|+|+|++++|+.++.+ .+ .
T Consensus 276 e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~ 355 (505)
T TIGR00595 276 EELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGF 355 (505)
T ss_pred HHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHH
Confidence 888774 6789999999876655 899999999999999999999999999999998654443 22 3
Q ss_pred hHHHHHhhhccCCCCCccEEEEeChhhHHHHH-----HHHHHhhcCCCccccCCCCcc
Q psy9399 351 EDYVHRIGRTGRAGRNGFAVSLVNHAERMNIK-----KIERFTKQQIPIEVINGFEPK 403 (453)
Q Consensus 351 ~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 403 (453)
..+.|++||+||.++.|.+++++..++...+. .++.|+..++..+...++||.
T Consensus 356 ~ll~q~~GRagR~~~~g~viiqt~~p~~~~~~~~~~~d~~~f~~~el~~R~~~~~PPf 413 (505)
T TIGR00595 356 QLLTQVAGRAGRAEDPGQVIIQTYNPNHPAIQAALTGDYEAFYEQELAQRRALNYPPF 413 (505)
T ss_pred HHHHHHHhccCCCCCCCEEEEEeCCCCCHHHHHHHhCCHHHHHHHHHHHHHHcCCCch
Confidence 56899999999999999999999887765544 456789999999998999994
No 76
>KOG0351|consensus
Probab=100.00 E-value=2.5e-34 Score=293.02 Aligned_cols=329 Identities=23% Similarity=0.277 Sum_probs=255.7
Q ss_pred HHHHH-HhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhh
Q psy9399 12 VLKAL-VKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKER 90 (453)
Q Consensus 12 ~~~~l-~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (453)
....+ ..+|...+++-|.+++...+.|++++|.+|||.||+++|.+|++-.
T Consensus 252 ~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~---------------------------- 303 (941)
T KOG0351|consen 252 LELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL---------------------------- 303 (941)
T ss_pred HHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc----------------------------
Confidence 33334 4589999999999999999999999999999999999999998753
Q ss_pred cccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHH---HHhcC---CCCEEEeChHHHHHHHh
Q psy9399 91 LRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQM---QLLSR---NPEILLATPGRLIDHMN 164 (453)
Q Consensus 91 ~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~Ilv~T~~~l~~~l~ 164 (453)
++-+|||.|..+|...+...+... .+....+.++....+.. +.+.. ..+|+..||+++...-.
T Consensus 304 ------~gitvVISPL~SLm~DQv~~L~~~-----~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~ 372 (941)
T KOG0351|consen 304 ------GGVTVVISPLISLMQDQVTHLSKK-----GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEG 372 (941)
T ss_pred ------CCceEEeccHHHHHHHHHHhhhhc-----CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccc
Confidence 447899999999997776666443 37888888887775433 22322 46899999999744221
Q ss_pred --cCCCCCCC---ccEEEEechhhhcccC--ChHHHHHH---HhhCCCCccEEEEEeecChHHHHHHHh--hcCCCeEEE
Q psy9399 165 --SGKINFSH---LQILVLDEADRMLDMG--FINDIEKI---VDATPVTRQTMLFSATLDGIVGNMAEN--ITKDPLILK 232 (453)
Q Consensus 165 --~~~~~~~~---~~~iIiDE~h~~~~~~--~~~~~~~~---~~~~~~~~~~i~~SAT~~~~~~~~~~~--~~~~~~~~~ 232 (453)
.....+.. +.++|+||||..+.|+ |......+ ....+. ..+|++|||.+..+..-.-. .+.++....
T Consensus 373 l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~-vP~iALTATAT~~v~~DIi~~L~l~~~~~~~ 451 (941)
T KOG0351|consen 373 LLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPG-VPFIALTATATERVREDVIRSLGLRNPELFK 451 (941)
T ss_pred hhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCCC-CCeEEeehhccHHHHHHHHHHhCCCCcceec
Confidence 11112333 7899999999999887 54444443 344444 57999999998766543332 244444333
Q ss_pred ecccccccccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHH
Q psy9399 233 VNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTL 312 (453)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 312 (453)
.. .+.+++...+............+..+......+.+||+|.++.+|+.++..|+..++.+..||++|++.+|..+.
T Consensus 452 ~s---fnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq 528 (941)
T KOG0351|consen 452 SS---FNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQ 528 (941)
T ss_pred cc---CCCCCceEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHH
Confidence 22 233455444444433344445566666677888999999999999999999999999999999999999999999
Q ss_pred HHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHH
Q psy9399 313 ENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKK 383 (453)
Q Consensus 313 ~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~ 383 (453)
..|..++++|+|||=++++|+|.|+|+.||++..|++.+.|.|-+|||||.|....|++|++..|...++.
T Consensus 529 ~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ 599 (941)
T KOG0351|consen 529 KAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRR 599 (941)
T ss_pred HHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987655444
No 77
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=3.5e-33 Score=276.09 Aligned_cols=320 Identities=18% Similarity=0.193 Sum_probs=237.9
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCc
Q psy9399 19 VGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP 98 (453)
Q Consensus 19 ~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
+|. .|++.|..+...+..|+ +..++||+|||+++.+|++-.... +.
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~-------------------------------G~ 98 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT-------------------------------GK 98 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh-------------------------------CC
Confidence 687 59999999888887665 999999999999999998644333 34
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHH-HHHHhcC------CCCCC
Q psy9399 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRL-IDHMNSG------KINFS 171 (453)
Q Consensus 99 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~------~~~~~ 171 (453)
.++|++||..||.|.++++..+....+ +.+..+.|+.........+ .++|+++||+.| +++++.+ ...++
T Consensus 99 ~V~VvTpt~~LA~qdae~~~~l~~~LG-Lsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r 175 (745)
T TIGR00963 99 GVHVVTVNDYLAQRDAEWMGQVYRFLG-LSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQR 175 (745)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccCC-CeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhcc
Confidence 799999999999999999999988776 9999999998865544333 579999999999 8888766 24578
Q ss_pred CccEEEEechhhhcc-cC---------------Ch--------------------------------HHHHHHH------
Q psy9399 172 HLQILVLDEADRMLD-MG---------------FI--------------------------------NDIEKIV------ 197 (453)
Q Consensus 172 ~~~~iIiDE~h~~~~-~~---------------~~--------------------------------~~~~~~~------ 197 (453)
.++++|+||+|+++- .. .. ..++.++
T Consensus 176 ~l~~aIIDEaDs~LIDeaRtpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly 255 (745)
T TIGR00963 176 PFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLY 255 (745)
T ss_pred ccceeEeecHHHHhHHhhhhHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCcccc
Confidence 899999999997542 10 00 0000000
Q ss_pred ------------hhC-----------------------------------------------------------------
Q psy9399 198 ------------DAT----------------------------------------------------------------- 200 (453)
Q Consensus 198 ------------~~~----------------------------------------------------------------- 200 (453)
.++
T Consensus 256 ~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn 335 (745)
T TIGR00963 256 DLENSPLIHYINNALKAKELFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQN 335 (745)
T ss_pred ChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHH
Confidence 000
Q ss_pred --CCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccccccceEEEEEEcchhhHH-HHHHHHHh-hCCCCcEEEEe
Q psy9399 201 --PVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKN-RLLDYLLR-DKRVGQAVVFT 276 (453)
Q Consensus 201 --~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~-~~~~~~~lvf~ 276 (453)
+....+.+||+|.......+...+..+-..+.. ..+..... .......+...+. .++..+.. ...+.++||||
T Consensus 336 ~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPt-nkp~~R~d--~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t 412 (745)
T TIGR00963 336 FFRLYEKLSGMTGTAKTEEEEFEKIYNLEVVVVPT-NRPVIRKD--LSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGT 412 (745)
T ss_pred HHhhCchhhccCCCcHHHHHHHHHHhCCCEEEeCC-CCCeeeee--CCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 001157788888765545554444333222211 11111111 1112222333333 34444433 35678999999
Q ss_pred ccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCC-------CcEEEEcCCCCC
Q psy9399 277 ATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPA-------ITHVFNYDLPKF 349 (453)
Q Consensus 277 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~-------~~~Vi~~~~~~~ 349 (453)
++++.++.+++.|.+.|+++..+|++ +.+|+..+..|+.+...|+|||+++++|+|++. ..+||+++.|.+
T Consensus 413 ~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s 490 (745)
T TIGR00963 413 TSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHES 490 (745)
T ss_pred CcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCc
Confidence 99999999999999999999999999 778999999999999999999999999999987 459999999999
Q ss_pred hhHHHHHhhhccCCCCCccEEEEeChhhHHH
Q psy9399 350 PEDYVHRIGRTGRAGRNGFAVSLVNHAERMN 380 (453)
Q Consensus 350 ~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 380 (453)
...+.|+.||+||.|.+|.+..+++..|.-.
T Consensus 491 ~ri~~q~~GRtGRqG~~G~s~~~ls~eD~l~ 521 (745)
T TIGR00963 491 RRIDNQLRGRSGRQGDPGSSRFFLSLEDNLM 521 (745)
T ss_pred HHHHHHHhccccCCCCCcceEEEEeccHHHH
Confidence 9999999999999999999999999887543
No 78
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=2.2e-33 Score=297.23 Aligned_cols=291 Identities=20% Similarity=0.283 Sum_probs=212.1
Q ss_pred HHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhc
Q psy9399 12 VLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERL 91 (453)
Q Consensus 12 ~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (453)
+.+.+.+.....|+++|+.+++.++.|+++++.||||+|||. |.+++...+..
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-------------------------- 119 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK-------------------------- 119 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh--------------------------
Confidence 444455534447999999999999999999999999999997 65666554432
Q ss_pred ccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCee---EEEEECCCchHHHHH---Hh-cCCCCEEEeChHHHHHHHh
Q psy9399 92 RFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIK---AISILGGMPYLRQMQ---LL-SRNPEILLATPGRLIDHMN 164 (453)
Q Consensus 92 ~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~~-~~~~~Ilv~T~~~l~~~l~ 164 (453)
.+.+++|++||++|+.|+.+.+..+....+ +. +..++|+....++.. .+ .++++|+|+||+.|.+.+.
T Consensus 120 ----~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~-i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~ 194 (1171)
T TIGR01054 120 ----KGKRCYIILPTTLLVIQVAEKISSLAEKAG-VGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYD 194 (1171)
T ss_pred ----cCCeEEEEeCHHHHHHHHHHHHHHHHHhcC-CceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHH
Confidence 256899999999999999999999876543 33 234678776654322 22 3458999999999988766
Q ss_pred cCCCCCCCccEEEEechhhhcc-----------cCChHH-HHHHH----------------------hhCCCCcc--EEE
Q psy9399 165 SGKINFSHLQILVLDEADRMLD-----------MGFIND-IEKIV----------------------DATPVTRQ--TML 208 (453)
Q Consensus 165 ~~~~~~~~~~~iIiDE~h~~~~-----------~~~~~~-~~~~~----------------------~~~~~~~~--~i~ 208 (453)
.-. . +++++|+||||++++ .||... +..++ ..++...| +++
T Consensus 195 ~l~--~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~ 271 (1171)
T TIGR01054 195 ELG--P-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIV 271 (1171)
T ss_pred Hhc--C-CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEE
Confidence 421 1 799999999999997 456543 33322 23344444 567
Q ss_pred EEee-cChHHHHHHHhhcCCCeEEEecccccccccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccc---hhHHH
Q psy9399 209 FSAT-LDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATK---RDADI 284 (453)
Q Consensus 209 ~SAT-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~---~~~~~ 284 (453)
+||| .+..... .++.+...+.+........++.+.+..... . ...+..+++.. +.++||||+++ +.|+.
T Consensus 272 ~SAT~~p~~~~~---~l~r~ll~~~v~~~~~~~r~I~~~~~~~~~--~-~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~ 344 (1171)
T TIGR01054 272 SSATGRPRGKRA---KLFRELLGFEVGGGSDTLRNVVDVYVEDED--L-KETLLEIVKKL-GTGGIVYVSIDYGKEKAEE 344 (1171)
T ss_pred EeCCCCccccHH---HHcccccceEecCccccccceEEEEEeccc--H-HHHHHHHHHHc-CCCEEEEEeccccHHHHHH
Confidence 8999 4443332 233344444444433334556666554332 1 23344455544 36899999999 99999
Q ss_pred HHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEe----CCcccCCCCCC-CcEEEEcCCCC
Q psy9399 285 IADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVAT----DVAARGIDVPA-ITHVFNYDLPK 348 (453)
Q Consensus 285 l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T----~~~~~Gvdi~~-~~~Vi~~~~~~ 348 (453)
+++.|+..|+++..+||+++. .+++.|++|+++||||| +++++|+|+|+ +++||+++.|.
T Consensus 345 l~~~L~~~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 345 IAEFLENHGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred HHHHHHhCCceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 999999999999999999963 68999999999999995 89999999999 89999999995
No 79
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=3.8e-32 Score=261.42 Aligned_cols=332 Identities=19% Similarity=0.266 Sum_probs=249.9
Q ss_pred CCHHH-HHHHHhCCCCCCcHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccc
Q psy9399 8 LHELV-LKALVKVGYTKPTGVQEQAIPAAISG------RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQN 80 (453)
Q Consensus 8 l~~~~-~~~l~~~~~~~~~~~Q~~~~~~~~~~------~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 80 (453)
....+ .+.+..+.| ++|..|+.++..|... -+=++.|..|||||.+++++++..+..
T Consensus 247 ~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~--------------- 310 (677)
T COG1200 247 ANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA--------------- 310 (677)
T ss_pred ccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc---------------
Confidence 34444 445567999 6999999999999854 247999999999999999999988765
Q ss_pred cccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHh----cCCCCEEEeCh
Q psy9399 81 NNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLL----SRNPEILLATP 156 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~ 156 (453)
|.++..++||--|+.|-++.+.++....+ +.+..++|...-......+ .+..+|+|+|+
T Consensus 311 ----------------G~Q~ALMAPTEILA~QH~~~~~~~l~~~~-i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTH 373 (677)
T COG1200 311 ----------------GYQAALMAPTEILAEQHYESLRKWLEPLG-IRVALLTGSLKGKARKEILEQLASGEIDIVVGTH 373 (677)
T ss_pred ----------------CCeeEEeccHHHHHHHHHHHHHHHhhhcC-CeEEEeecccchhHHHHHHHHHhCCCCCEEEEcc
Confidence 66999999999999999999999988776 8999999887765543332 34689999997
Q ss_pred HHHHHHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCC-CccEEEEEeecChHHHHHHHhhcCCCeEEEecc
Q psy9399 157 GRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPV-TRQTMLFSATLDGIVGNMAENITKDPLILKVNS 235 (453)
Q Consensus 157 ~~l~~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 235 (453)
.-+ .....|++++++|+||=|++ +-.-+..+..... ....+.|||||-+.. ++-..+++-..-....
T Consensus 374 ALi-----Qd~V~F~~LgLVIiDEQHRF-----GV~QR~~L~~KG~~~Ph~LvMTATPIPRT--LAlt~fgDldvS~IdE 441 (677)
T COG1200 374 ALI-----QDKVEFHNLGLVIIDEQHRF-----GVHQRLALREKGEQNPHVLVMTATPIPRT--LALTAFGDLDVSIIDE 441 (677)
T ss_pred hhh-----hcceeecceeEEEEeccccc-----cHHHHHHHHHhCCCCCcEEEEeCCCchHH--HHHHHhccccchhhcc
Confidence 544 44567899999999999985 3333444444444 568999999986633 3333444433333334
Q ss_pred cccccccceEEEEEEcchhhHHHHHHHHHhh-CCCCcEEEEeccchh--------HHHHHHHHhh--CCCceeecCCCCC
Q psy9399 236 IEKKQKNITQSILFVDDILHKNRLLDYLLRD-KRVGQAVVFTATKRD--------ADIIADRLNI--SGFLAAPLHGDLH 304 (453)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~lvf~~~~~~--------~~~l~~~L~~--~~~~~~~~~~~~~ 304 (453)
.+.....+....+..... ..++..+... ..+.++.+.|+-.++ |...++.|+. .+.++.++||.|+
T Consensus 442 lP~GRkpI~T~~i~~~~~---~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~ 518 (677)
T COG1200 442 LPPGRKPITTVVIPHERR---PEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMK 518 (677)
T ss_pred CCCCCCceEEEEeccccH---HHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCC
Confidence 444444555555544333 3344333332 356799999998754 5566777764 3567999999999
Q ss_pred HHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCC-CChhHHHHHhhhccCCCCCccEEEEeChhh-HHHHH
Q psy9399 305 QNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLP-KFPEDYVHRIGRTGRAGRNGFAVSLVNHAE-RMNIK 382 (453)
Q Consensus 305 ~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~-~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~-~~~~~ 382 (453)
.+++..+++.|++|+++|||||.+++.|||+|+.+++|+.++- +...+..|..||+||.+..+.|++++.++. ...-+
T Consensus 519 ~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~ 598 (677)
T COG1200 519 PAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQ 598 (677)
T ss_pred hHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHH
Confidence 9999999999999999999999999999999999998887765 467899999999999999999999998876 43344
Q ss_pred HHHHH
Q psy9399 383 KIERF 387 (453)
Q Consensus 383 ~~~~~ 387 (453)
+++-+
T Consensus 599 RL~im 603 (677)
T COG1200 599 RLKIM 603 (677)
T ss_pred HHHHH
Confidence 54443
No 80
>KOG0349|consensus
Probab=100.00 E-value=6.4e-34 Score=256.12 Aligned_cols=281 Identities=31% Similarity=0.522 Sum_probs=219.7
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHHHHHhccc--CCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCC
Q psy9399 94 KPAQPRMLVLTPTRELALQVTAATERYGLYM--KKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFS 171 (453)
Q Consensus 94 ~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~ 171 (453)
.++.+.++|+-|+++|++|+.+.+++|.... +.++...+.||.....+...+..+.+|+|+||+++.+.+..+...+.
T Consensus 283 ~pNap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt 362 (725)
T KOG0349|consen 283 APNAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLT 362 (725)
T ss_pred CCCCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeee
Confidence 3667789999999999999999887775443 33566688888888888889999999999999999999999988899
Q ss_pred CccEEEEechhhhcccCChHHHHHHHhhCCC------CccEEEEEeecCh-HHHHHHHhhcCCCeEEEecccccccccce
Q psy9399 172 HLQILVLDEADRMLDMGFINDIEKIVDATPV------TRQTMLFSATLDG-IVGNMAENITKDPLILKVNSIEKKQKNIT 244 (453)
Q Consensus 172 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~------~~~~i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (453)
.+.++|+||++.++..++.+.+.++...+|. ..|.+++|||+.. .+..+.+..+.-|..+........+..+.
T Consensus 363 ~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvH 442 (725)
T KOG0349|consen 363 HCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVH 442 (725)
T ss_pred eeEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhc
Confidence 9999999999999999998888888877763 3589999999852 23333444455555555544333333333
Q ss_pred EEEEEEcch------------------------------hhHHHHHH--------HHHhhCCCCcEEEEeccchhHHHHH
Q psy9399 245 QSILFVDDI------------------------------LHKNRLLD--------YLLRDKRVGQAVVFTATKRDADIIA 286 (453)
Q Consensus 245 ~~~~~~~~~------------------------------~~~~~~~~--------~l~~~~~~~~~lvf~~~~~~~~~l~ 286 (453)
+....+... ........ ..++.+.-.++++||.++.+|+.+.
T Consensus 443 hvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLe 522 (725)
T KOG0349|consen 443 HVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLE 522 (725)
T ss_pred cceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHH
Confidence 322222111 00111111 1122334468999999999999999
Q ss_pred HHHhhCC---CceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCC
Q psy9399 287 DRLNISG---FLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRA 363 (453)
Q Consensus 287 ~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~ 363 (453)
+++++.| +.|..+||+..+.+|..-++.|+.+..+.||||+++++|+|+.++-.+|+..+|.....|+||+||+||.
T Consensus 523 r~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 523 RMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred HHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchh
Confidence 9998864 5788899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCccEEEEeC
Q psy9399 364 GRNGFAVSLVN 374 (453)
Q Consensus 364 g~~g~~~~~~~ 374 (453)
.+-|.++.++.
T Consensus 603 ermglaislva 613 (725)
T KOG0349|consen 603 ERMGLAISLVA 613 (725)
T ss_pred hhcceeEEEee
Confidence 77777776654
No 81
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=6.8e-33 Score=268.92 Aligned_cols=292 Identities=22% Similarity=0.256 Sum_probs=204.2
Q ss_pred CCcHHHHHHHHHHhc----CCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCc
Q psy9399 23 KPTGVQEQAIPAAIS----GRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP 98 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~~----~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
.++++|++++.++.+ ++..++++|||+|||.+++..+... ..
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~----------------------------------~~ 81 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL----------------------------------KR 81 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh----------------------------------cC
Confidence 599999999999998 7889999999999999776666543 22
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEE
Q psy9399 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178 (453)
Q Consensus 99 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIi 178 (453)
++|||||+++|+.||.+.+..+.... -....+.|+..... . ..|.|+|.+.+............++++||+
T Consensus 82 ~~Lvlv~~~~L~~Qw~~~~~~~~~~~--~~~g~~~~~~~~~~------~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~ 152 (442)
T COG1061 82 STLVLVPTKELLDQWAEALKKFLLLN--DEIGIYGGGEKELE------P-AKVTVATVQTLARRQLLDEFLGNEFGLIIF 152 (442)
T ss_pred CEEEEECcHHHHHHHHHHHHHhcCCc--cccceecCceeccC------C-CcEEEEEhHHHhhhhhhhhhcccccCEEEE
Confidence 59999999999999998877765322 12333333333111 1 369999999987752111222347999999
Q ss_pred echhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHH---HHHhhcCCCeEEEecccc----cccccceEEEEEEc
Q psy9399 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGN---MAENITKDPLILKVNSIE----KKQKNITQSILFVD 251 (453)
Q Consensus 179 DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 251 (453)
||||++.+..+......+....+ ++++||||+..... ......+ +........+ ..........+...
T Consensus 153 DE~Hh~~a~~~~~~~~~~~~~~~----~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~ 227 (442)
T COG1061 153 DEVHHLPAPSYRRILELLSAAYP----RLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVT 227 (442)
T ss_pred EccccCCcHHHHHHHHhhhcccc----eeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEec
Confidence 99999987765443333333322 89999998632211 1111111 2222221100 00000111111110
Q ss_pred -------------------------------------chhhHHHHHHHHHhhC-CCCcEEEEeccchhHHHHHHHHhhCC
Q psy9399 252 -------------------------------------DILHKNRLLDYLLRDK-RVGQAVVFTATKRDADIIADRLNISG 293 (453)
Q Consensus 252 -------------------------------------~~~~~~~~~~~l~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~ 293 (453)
....+...+..++..+ .+.+++||+.+..+++.++..+...+
T Consensus 228 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~ 307 (442)
T COG1061 228 LTEDEEREYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPG 307 (442)
T ss_pred cchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCC
Confidence 0011112223333333 46799999999999999999999888
Q ss_pred CceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCC
Q psy9399 294 FLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRA 363 (453)
Q Consensus 294 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~ 363 (453)
. +..+.+..+..+|..+++.|+.|++++||++.++.+|+|+|+++++|...+..|...|.||+||..|.
T Consensus 308 ~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 308 I-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred c-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 8 88999999999999999999999999999999999999999999999999999999999999999994
No 82
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=3.4e-31 Score=268.63 Aligned_cols=321 Identities=20% Similarity=0.214 Sum_probs=251.4
Q ss_pred CCHHHHHHHH-hCCCCCCcHHHHHHHHHHhcC----C--cEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccc
Q psy9399 8 LHELVLKALV-KVGYTKPTGVQEQAIPAAISG----R--DLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQN 80 (453)
Q Consensus 8 l~~~~~~~l~-~~~~~~~~~~Q~~~~~~~~~~----~--~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 80 (453)
.+.+....++ .|+| +-|+-|..||..+++. + |=+|||..|.|||.+++-+++.....
T Consensus 579 ~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~--------------- 642 (1139)
T COG1197 579 PDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD--------------- 642 (1139)
T ss_pred CChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC---------------
Confidence 3444444444 4777 5899999999998843 3 58999999999999999999987665
Q ss_pred cccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHh----cCCCCEEEeCh
Q psy9399 81 NNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLL----SRNPEILLATP 156 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~ 156 (453)
+.+|.|+|||.-|++|-++.|++....++ +++..+.--....+....+ .+..||+|+|+
T Consensus 643 ----------------GKQVAvLVPTTlLA~QHy~tFkeRF~~fP-V~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH 705 (1139)
T COG1197 643 ----------------GKQVAVLVPTTLLAQQHYETFKERFAGFP-VRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH 705 (1139)
T ss_pred ----------------CCeEEEEcccHHhHHHHHHHHHHHhcCCC-eeEEEecccCCHHHHHHHHHHHhcCCccEEEech
Confidence 56999999999999999999998777776 8888777655555544333 34789999996
Q ss_pred HHHHHHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEeccc
Q psy9399 157 GRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236 (453)
Q Consensus 157 ~~l~~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 236 (453)
. +..+...|.+++++||||.|++ +-.-..-++.++.+..++-+||||-+..-.+.-....+-..+.+.+.
T Consensus 706 r-----LL~kdv~FkdLGLlIIDEEqRF-----GVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~ 775 (1139)
T COG1197 706 R-----LLSKDVKFKDLGLLIIDEEQRF-----GVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPE 775 (1139)
T ss_pred H-----hhCCCcEEecCCeEEEechhhc-----CccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCC
Confidence 4 4455667999999999999985 44445555666677789999999876555554444555444444332
Q ss_pred ccccccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhh--CCCceeecCCCCCHHHHHHHHHH
Q psy9399 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNI--SGFLAAPLHGDLHQNARNRTLEN 314 (453)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~--~~~~~~~~~~~~~~~~r~~~~~~ 314 (453)
....+...+...++..-+..+...+ .++|++....|.++..+.+++.|++ +...+++.||.|+..+-++++..
T Consensus 776 --~R~pV~T~V~~~d~~~ireAI~REl---~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~ 850 (1139)
T COG1197 776 --DRLPVKTFVSEYDDLLIREAILREL---LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLD 850 (1139)
T ss_pred --CCcceEEEEecCChHHHHHHHHHHH---hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHH
Confidence 2234444455454444444444444 6778999999999999999999987 46679999999999999999999
Q ss_pred HhcCCccEEEEeCCcccCCCCCCCcEEEEcCCC-CChhHHHHHhhhccCCCCCccEEEEeChh
Q psy9399 315 LRRGRIKILVATDVAARGIDVPAITHVFNYDLP-KFPEDYVHRIGRTGRAGRNGFAVSLVNHA 376 (453)
Q Consensus 315 f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~-~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 376 (453)
|-+|+.+|||||.+++.|+|+|+++.+|.-+.. +...+..|..||+||..+.+.||.++.+.
T Consensus 851 F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 851 FYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred HHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 999999999999999999999999998877765 46889999999999999999999999864
No 83
>KOG0353|consensus
Probab=100.00 E-value=5e-32 Score=240.34 Aligned_cols=333 Identities=20% Similarity=0.258 Sum_probs=247.5
Q ss_pred CCCCCCHHHHHHHHh-CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccc
Q psy9399 4 KSIGLHELVLKALVK-VGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNN 82 (453)
Q Consensus 4 ~~l~l~~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 82 (453)
++++-+.+..+.|+. +.+..++|.|..++++.+.++++++..|||.||+++|.+|++..
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-------------------- 133 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-------------------- 133 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc--------------------
Confidence 345556777777765 88899999999999999999999999999999999999999864
Q ss_pred cchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHH---HHh---cCCCCEEEeCh
Q psy9399 83 KIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQM---QLL---SRNPEILLATP 156 (453)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~Ilv~T~ 156 (453)
.+-+||+||..+|++.+.-.++.++ +....+.......... ..+ .+...++..||
T Consensus 134 --------------dg~alvi~plislmedqil~lkqlg-----i~as~lnansske~~k~v~~~i~nkdse~kliyvtp 194 (695)
T KOG0353|consen 134 --------------DGFALVICPLISLMEDQILQLKQLG-----IDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTP 194 (695)
T ss_pred --------------CCceEeechhHHHHHHHHHHHHHhC-----cchhhccCcccHHHHHHHHHHHcCCCceeEEEEecH
Confidence 4579999999999988777788876 4433443333322211 111 12456899999
Q ss_pred HHHHHHH-----hcCCCCCCCccEEEEechhhhcccC--ChHHHHH--HHhhCCCCccEEEEEeecChHHHHHHHhhcCC
Q psy9399 157 GRLIDHM-----NSGKINFSHLQILVLDEADRMLDMG--FINDIEK--IVDATPVTRQTMLFSATLDGIVGNMAENITKD 227 (453)
Q Consensus 157 ~~l~~~l-----~~~~~~~~~~~~iIiDE~h~~~~~~--~~~~~~~--~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~ 227 (453)
+.+...- ..+.+....+.+|.+||+|..+.|+ |..+... ++...-+...+++++||.+..+-.-.+..+.-
T Consensus 195 ekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~i 274 (695)
T KOG0353|consen 195 EKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCI 274 (695)
T ss_pred HHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhH
Confidence 9863321 1123456778999999999999887 4443332 33444455679999999876554444433322
Q ss_pred CeEEEecccccccccceEEEEEEcchhhHHH----HHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCC
Q psy9399 228 PLILKVNSIEKKQKNITQSILFVDDILHKNR----LLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDL 303 (453)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 303 (453)
...+... ...+.+++....... +....+ +...+.....+...+|+|-++++++.++..|+..|+....+|+.|
T Consensus 275 e~~~tf~-a~fnr~nl~yev~qk--p~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~l 351 (695)
T KOG0353|consen 275 EAAFTFR-AGFNRPNLKYEVRQK--PGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANL 351 (695)
T ss_pred Hhhheee-cccCCCCceeEeeeC--CCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCcccccccccc
Confidence 2111111 112223443333332 223222 333333445666789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHH----------------------------
Q psy9399 304 HQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVH---------------------------- 355 (453)
Q Consensus 304 ~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q---------------------------- 355 (453)
.+++|.-+-+.|..|++.|+|+|-++++|+|-|+++.||+.+.|.+.+.|.|
T Consensus 352 ep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinile 431 (695)
T KOG0353|consen 352 EPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILE 431 (695)
T ss_pred CccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhh
Confidence 9999999999999999999999999999999999999999999999999999
Q ss_pred ---------------HhhhccCCCCCccEEEEeChhhH
Q psy9399 356 ---------------RIGRTGRAGRNGFAVSLVNHAER 378 (453)
Q Consensus 356 ---------------~~GR~~R~g~~g~~~~~~~~~~~ 378 (453)
..||+||.+.+..|++++.-.|-
T Consensus 432 vctnfkiffavfsekesgragrd~~~a~cilyy~~~di 469 (695)
T KOG0353|consen 432 VCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADI 469 (695)
T ss_pred hhccceeeeeeecchhccccccCCCcccEEEEechHHH
Confidence 67999999999999999876654
No 84
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=8.1e-31 Score=269.95 Aligned_cols=335 Identities=16% Similarity=0.176 Sum_probs=220.7
Q ss_pred CCcHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceE
Q psy9399 23 KPTGVQEQAIPAAISG--RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRM 100 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~~~--~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (453)
.|.|+|..+...+... ..+++...+|.|||..+.+.+...+..+ ...++
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g-----------------------------~~~rv 202 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG-----------------------------RAERV 202 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC-----------------------------CCCcE
Confidence 5899999998887654 3599999999999988766666554442 23489
Q ss_pred EEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHH---HhcCCCCEEEeChHHHHHHHh-cCCCCCCCccEE
Q psy9399 101 LVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQ---LLSRNPEILLATPGRLIDHMN-SGKINFSHLQIL 176 (453)
Q Consensus 101 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Ilv~T~~~l~~~l~-~~~~~~~~~~~i 176 (453)
||+||. .|+.||..++.+... +....+.+ ........ ......+++|+|.+.+...-. ...+.-..+++|
T Consensus 203 LIVvP~-sL~~QW~~El~~kF~----l~~~i~~~-~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlv 276 (956)
T PRK04914 203 LILVPE-TLQHQWLVEMLRRFN----LRFSLFDE-ERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLL 276 (956)
T ss_pred EEEcCH-HHHHHHHHHHHHHhC----CCeEEEcC-cchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEE
Confidence 999998 899999999876542 33333222 22111100 011245799999998764211 111122478999
Q ss_pred EEechhhhcccC--ChHHHHHHHhhCCCCccEEEEEeecCh-------------------HHHHHH-------------H
Q psy9399 177 VLDEADRMLDMG--FINDIEKIVDATPVTRQTMLFSATLDG-------------------IVGNMA-------------E 222 (453)
Q Consensus 177 IiDE~h~~~~~~--~~~~~~~~~~~~~~~~~~i~~SAT~~~-------------------~~~~~~-------------~ 222 (453)
|+||||++.... -......+.........++++||||-. ....+. .
T Consensus 277 IvDEAH~lk~~~~~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~ 356 (956)
T PRK04914 277 VVDEAHHLVWSEEAPSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQ 356 (956)
T ss_pred EEechhhhccCCCCcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHH
Confidence 999999986321 111222222222334468999999931 000000 0
Q ss_pred hhc-CCC---------------------------------------------------eEEEecc--cccccccceEEEE
Q psy9399 223 NIT-KDP---------------------------------------------------LILKVNS--IEKKQKNITQSIL 248 (453)
Q Consensus 223 ~~~-~~~---------------------------------------------------~~~~~~~--~~~~~~~~~~~~~ 248 (453)
.+. .++ ..+.... ....+....+.+.
T Consensus 357 ~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~ 436 (956)
T PRK04914 357 ALLAGEKLSDDALNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIP 436 (956)
T ss_pred HHhcCCcCCHHHHHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEee
Confidence 000 000 0000000 0000000000000
Q ss_pred E------------------------------------EcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHh-h
Q psy9399 249 F------------------------------------VDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLN-I 291 (453)
Q Consensus 249 ~------------------------------------~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~-~ 291 (453)
. ......+...+..+++...+.|+||||+++..+..+++.|+ .
T Consensus 437 l~~~~~y~~~~~~~~~~~~~~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~ 516 (956)
T PRK04914 437 LPLPEQYQTAIKVSLEARARDMLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALRER 516 (956)
T ss_pred cCCCHHHHHHHHHhHHHHHHhhcCHHHHHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc
Confidence 0 00111233445555666667899999999999999999994 6
Q ss_pred CCCceeecCCCCCHHHHHHHHHHHhcC--CccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccE
Q psy9399 292 SGFLAAPLHGDLHQNARNRTLENLRRG--RIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFA 369 (453)
Q Consensus 292 ~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~ 369 (453)
.|+.+..+||+|+..+|.++++.|+++ ...|||||+++++|+|++.+++||++|+|+++..|.||+||++|.|+.+.+
T Consensus 517 ~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V 596 (956)
T PRK04914 517 EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDI 596 (956)
T ss_pred cCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceE
Confidence 799999999999999999999999985 589999999999999999999999999999999999999999999999988
Q ss_pred EEEeChhhHHHHHHHHHHhhcCC
Q psy9399 370 VSLVNHAERMNIKKIERFTKQQI 392 (453)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~ 392 (453)
.++........-..+.+++.+.+
T Consensus 597 ~i~~~~~~~t~~e~i~~~~~~~l 619 (956)
T PRK04914 597 QIHVPYLEGTAQERLFRWYHEGL 619 (956)
T ss_pred EEEEccCCCCHHHHHHHHHhhhc
Confidence 77776655555566777766644
No 85
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.2e-31 Score=264.51 Aligned_cols=342 Identities=20% Similarity=0.236 Sum_probs=250.6
Q ss_pred CCCcHHHHHHHHHHhcC----CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCC
Q psy9399 22 TKPTGVQEQAIPAAISG----RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ 97 (453)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~----~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (453)
..+++.|+.++..+.+. ...++.|.||||||.+|+-.+...+.. |
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~-------------------------------G 245 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ-------------------------------G 245 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc-------------------------------C
Confidence 35688999999998766 459999999999999999999888876 5
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEE
Q psy9399 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177 (453)
Q Consensus 98 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iI 177 (453)
.++|+++|.++|..|+.+.|+........+-++.+..+.....|.+...+...|+|+|...++- +|+++++||
T Consensus 246 kqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~-------Pf~~LGLII 318 (730)
T COG1198 246 KQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFL-------PFKNLGLII 318 (730)
T ss_pred CEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhcC-------chhhccEEE
Confidence 6999999999999999999988664332344455555566666667777789999999999877 899999999
Q ss_pred EechhhhcccC-----ChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecc--cccccccceEEEEEE
Q psy9399 178 LDEADRMLDMG-----FINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNS--IEKKQKNITQSILFV 250 (453)
Q Consensus 178 iDE~h~~~~~~-----~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 250 (453)
+||.|.-.... |...-.+++.....++++|+.||||+- +.......+....+.... .....+.+.......
T Consensus 319 vDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~pvvLgSATPSL--ES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~ 396 (730)
T COG1198 319 VDEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVVLGSATPSL--ESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRK 396 (730)
T ss_pred EeccccccccCCcCCCcCHHHHHHHHHHHhCCCEEEecCCCCH--HHHHhhhcCceEEEEccccccccCCCcceEEeccc
Confidence 99999765332 445555566666677889999999774 444433333233333322 111122222222111
Q ss_pred cchhh----HHHHHHHHHhh-CCCCcEEEEeccc----------------------------------------------
Q psy9399 251 DDILH----KNRLLDYLLRD-KRVGQAVVFTATK---------------------------------------------- 279 (453)
Q Consensus 251 ~~~~~----~~~~~~~l~~~-~~~~~~lvf~~~~---------------------------------------------- 279 (453)
..... ...++..+.+. ..++++|+|.|++
T Consensus 397 e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~ 476 (730)
T COG1198 397 EPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQ 476 (730)
T ss_pred cccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCC
Confidence 11111 13344444333 4567999999998
Q ss_pred --------------hhHHHHHHHHhh--CCCceeecCCCCCH--HHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEE
Q psy9399 280 --------------RDADIIADRLNI--SGFLAAPLHGDLHQ--NARNRTLENLRRGRIKILVATDVAARGIDVPAITHV 341 (453)
Q Consensus 280 --------------~~~~~l~~~L~~--~~~~~~~~~~~~~~--~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~V 341 (453)
..++++.+.|.. .+.++..+.++... ..-...+..|.+|+.+|||+|++++.|.|+|+++.|
T Consensus 477 ~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLV 556 (730)
T COG1198 477 SCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLV 556 (730)
T ss_pred CCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEE
Confidence 456677777765 36678888888654 335678999999999999999999999999999997
Q ss_pred EEcCCCC------------ChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHH-----HHHhhcCCCccccCCCCcc
Q psy9399 342 FNYDLPK------------FPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKI-----ERFTKQQIPIEVINGFEPK 403 (453)
Q Consensus 342 i~~~~~~------------~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 403 (453)
...+... ....+.|.+|||||.+++|.+++++..++.+.++.+ ..|+++++..+...++||.
T Consensus 557 gvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~~dy~~F~~~El~~Rk~~~~PPf 635 (730)
T COG1198 557 GVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKRGDYEAFYEQELAERKELGLPPF 635 (730)
T ss_pred EEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHHhcCHHHHHHHHHHHHHhcCCCCh
Confidence 6555432 234567999999999999999999999998877654 5689999999999999994
No 86
>KOG0951|consensus
Probab=100.00 E-value=1.3e-31 Score=267.79 Aligned_cols=333 Identities=19% Similarity=0.265 Sum_probs=240.6
Q ss_pred CCCCCCcHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCC
Q psy9399 19 VGYTKPTGVQEQAIPAAISG-RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ 97 (453)
Q Consensus 19 ~~~~~~~~~Q~~~~~~~~~~-~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (453)
+|..++.++|..+.++++.+ .++++|||||+|||.++++.+++.+..+... +....-..
T Consensus 305 ~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~--------------------dgs~nl~~ 364 (1674)
T KOG0951|consen 305 FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLRE--------------------DGSVNLAP 364 (1674)
T ss_pred ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhccccc--------------------ccceeccc
Confidence 36667999999999998877 5699999999999999999999998875431 11112234
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcC--CCCCCCccE
Q psy9399 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSG--KINFSHLQI 175 (453)
Q Consensus 98 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~--~~~~~~~~~ 175 (453)
.+++|++|.++|++.|...+.+.....+ +.+...+|+....... ..+.+|+||||+..--.-++. ....+-+++
T Consensus 365 fKIVYIAPmKaLvqE~VgsfSkRla~~G-I~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~DiITRk~gdraY~qlvrL 440 (1674)
T KOG0951|consen 365 FKIVYIAPMKALVQEMVGSFSKRLAPLG-ITVLELTGDSQLGKEQ---IEETQVIVTTPEKWDIITRKSGDRAYEQLVRL 440 (1674)
T ss_pred ceEEEEeeHHHHHHHHHHHHHhhccccC-cEEEEecccccchhhh---hhcceeEEeccchhhhhhcccCchhHHHHHHH
Confidence 4899999999999999999888877766 9999999987754432 236789999999984433321 122456899
Q ss_pred EEEechhhhcccCChHHHHHHHhh-------CCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccccccceEEEE
Q psy9399 176 LVLDEADRMLDMGFINDIEKIVDA-------TPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSIL 248 (453)
Q Consensus 176 iIiDE~h~~~~~~~~~~~~~~~~~-------~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (453)
+|+||+|.+-+. .+..++.+... ....++++++|||+|+............+-..... ....+-.+.|.++
T Consensus 441 lIIDEIHLLhDd-RGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd-~syRpvPL~qq~I 518 (1674)
T KOG0951|consen 441 LIIDEIHLLHDD-RGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFD-SSYRPVPLKQQYI 518 (1674)
T ss_pred Hhhhhhhhcccc-cchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCcccccccC-cccCcCCccceEe
Confidence 999999976544 35555444432 23467899999999985443322222222222222 2222234455555
Q ss_pred EEcchh-h------HHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhh------------------------------
Q psy9399 249 FVDDIL-H------KNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNI------------------------------ 291 (453)
Q Consensus 249 ~~~~~~-~------~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~------------------------------ 291 (453)
-+.... . .....+.++++.+.+++|||+.+++++.+.|+.++.
T Consensus 519 gi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~k 598 (1674)
T KOG0951|consen 519 GITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAK 598 (1674)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhccc
Confidence 443221 1 124567778888889999999999988888877641
Q ss_pred -------CCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEE----cCC------CCChhHHH
Q psy9399 292 -------SGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFN----YDL------PKFPEDYV 354 (453)
Q Consensus 292 -------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~----~~~------~~~~~~~~ 354 (453)
..+.++++|++|+..+|..+.+.|++|+++|||+|.++++|+|+|.-+++|- +++ +.++.+..
T Consensus 599 n~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~ 678 (1674)
T KOG0951|consen 599 NPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVM 678 (1674)
T ss_pred ChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHH
Confidence 0123789999999999999999999999999999999999999998777763 332 24788999
Q ss_pred HHhhhccCCCCC--ccEEEEeChhh
Q psy9399 355 HRIGRTGRAGRN--GFAVSLVNHAE 377 (453)
Q Consensus 355 Q~~GR~~R~g~~--g~~~~~~~~~~ 377 (453)
||.|||||.+.+ |..++..+..+
T Consensus 679 qmlgragrp~~D~~gegiiit~~se 703 (1674)
T KOG0951|consen 679 QMLGRAGRPQYDTCGEGIIITDHSE 703 (1674)
T ss_pred HHHhhcCCCccCcCCceeeccCchH
Confidence 999999999766 66777666554
No 87
>PRK09694 helicase Cas3; Provisional
Probab=100.00 E-value=1.3e-30 Score=266.80 Aligned_cols=313 Identities=20% Similarity=0.242 Sum_probs=203.3
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCce
Q psy9399 20 GYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPR 99 (453)
Q Consensus 20 ~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (453)
+..+|+|+|+.+.........+++.||||+|||.+++.++...+... ...+
T Consensus 283 ~~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~-----------------------------~~~g 333 (878)
T PRK09694 283 NGYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQG-----------------------------LADS 333 (878)
T ss_pred CCCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhC-----------------------------CCCe
Confidence 34479999998865444455699999999999999888776544331 2458
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhcc-cCCeeEEEEECCCchHHHH---------------------HHhc---C---CCCE
Q psy9399 100 MLVLTPTRELALQVTAATERYGLY-MKKIKAISILGGMPYLRQM---------------------QLLS---R---NPEI 151 (453)
Q Consensus 100 ~lil~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------------------~~~~---~---~~~I 151 (453)
++|..||++.+.|+++++.++... .....+...+|........ .++. + -.+|
T Consensus 334 i~~aLPT~Atan~m~~Rl~~~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi 413 (878)
T PRK09694 334 IIFALPTQATANAMLSRLEALASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQI 413 (878)
T ss_pred EEEECcHHHHHHHHHHHHHHHHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCE
Confidence 999999999999999998864322 2224556666554321110 1111 1 2589
Q ss_pred EEeChHHHHHHHhc-CCCCCCCc----cEEEEechhhhcccCChHHHHHHHhhC-CCCccEEEEEeecChHHHHH-HHhh
Q psy9399 152 LLATPGRLIDHMNS-GKINFSHL----QILVLDEADRMLDMGFINDIEKIVDAT-PVTRQTMLFSATLDGIVGNM-AENI 224 (453)
Q Consensus 152 lv~T~~~l~~~l~~-~~~~~~~~----~~iIiDE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~~SAT~~~~~~~~-~~~~ 224 (453)
+|||.++++..... +...++.+ ++|||||+|.+... ....+..+++.+ .....+|+||||+|...... ...+
T Consensus 414 ~V~TiDQlL~a~l~~kh~~lR~~~La~svvIiDEVHAyD~y-m~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~ 492 (878)
T PRK09694 414 GVCTIDQVLISVLPVKHRFIRGFGLGRSVLIVDEVHAYDAY-MYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTY 492 (878)
T ss_pred EEcCHHHHHHHHHccchHHHHHHhhccCeEEEechhhCCHH-HHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHh
Confidence 99999998754433 22223333 48999999987432 223334444332 23457999999999766543 2222
Q ss_pred cCC---------CeEEEec-----cc--ccc----cccceEEEEEE--cchhhHHHHHHHHHhh-CCCCcEEEEeccchh
Q psy9399 225 TKD---------PLILKVN-----SI--EKK----QKNITQSILFV--DDILHKNRLLDYLLRD-KRVGQAVVFTATKRD 281 (453)
Q Consensus 225 ~~~---------~~~~~~~-----~~--~~~----~~~~~~~~~~~--~~~~~~~~~~~~l~~~-~~~~~~lvf~~~~~~ 281 (453)
... |...... .. ... .......+... ........++..+++. ..+++++|||||++.
T Consensus 493 ~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~ 572 (878)
T PRK09694 493 GGHDPVELSSAYPLITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDD 572 (878)
T ss_pred ccccccccccccccccccccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 111 0000000 00 000 00011111111 1112223445555543 456789999999999
Q ss_pred HHHHHHHHhhCC---CceeecCCCCCHHHHH----HHHHHH-hcCC---ccEEEEeCCcccCCCCCCCcEEEEcCCCCCh
Q psy9399 282 ADIIADRLNISG---FLAAPLHGDLHQNARN----RTLENL-RRGR---IKILVATDVAARGIDVPAITHVFNYDLPKFP 350 (453)
Q Consensus 282 ~~~l~~~L~~~~---~~~~~~~~~~~~~~r~----~~~~~f-~~g~---~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~ 350 (453)
|+++++.|++.+ ..+..+||.++..+|. ++++.| ++|+ ..|||+|++++.|+|+ +++++|....| .
T Consensus 573 Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--i 649 (878)
T PRK09694 573 AQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--V 649 (878)
T ss_pred HHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--H
Confidence 999999999754 5799999999999994 567778 6666 4699999999999999 68888887676 6
Q ss_pred hHHHHHhhhccCCCC
Q psy9399 351 EDYVHRIGRTGRAGR 365 (453)
Q Consensus 351 ~~~~Q~~GR~~R~g~ 365 (453)
+.++||+||++|.+.
T Consensus 650 dsLiQRaGR~~R~~~ 664 (878)
T PRK09694 650 DLLFQRLGRLHRHHR 664 (878)
T ss_pred HHHHHHHhccCCCCC
Confidence 899999999999875
No 88
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=2.5e-30 Score=269.86 Aligned_cols=301 Identities=22% Similarity=0.351 Sum_probs=205.7
Q ss_pred cHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHH-hhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEE
Q psy9399 25 TGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH-KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVL 103 (453)
Q Consensus 25 ~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 103 (453)
.....+.+.++.+++.++|+|+||||||. .+|.+. .+.. ...+.+++.
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~-----------------------------g~~g~I~~T 124 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGR-----------------------------GVKGLIGHT 124 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCC-----------------------------CCCCceeeC
Confidence 34445677777777779999999999998 456332 2111 112244555
Q ss_pred cCc----HHHHHHHHHHHHH-HhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEE
Q psy9399 104 TPT----RELALQVTAATER-YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178 (453)
Q Consensus 104 ~P~----~~L~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIi 178 (453)
-|. ++|+.++++++.. ++...+ +.+ ... .....+++|+++|++.|++.+.... .+.++++|||
T Consensus 125 QPRRlAArsLA~RVA~El~~~lG~~VG-Y~v-------rf~---~~~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~III 192 (1294)
T PRK11131 125 QPRRLAARTVANRIAEELETELGGCVG-YKV-------RFN---DQVSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIII 192 (1294)
T ss_pred CCcHHHHHHHHHHHHHHHhhhhcceec-eee-------cCc---cccCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEe
Confidence 574 6777777777664 332211 111 111 1123467999999999999887654 4899999999
Q ss_pred echh-hhcccCChHH-HHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccccccceEEEEEEcchh--
Q psy9399 179 DEAD-RMLDMGFIND-IEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDIL-- 254 (453)
Q Consensus 179 DE~h-~~~~~~~~~~-~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 254 (453)
||+| ++++.++... +..++.. +...|+|++|||++. ..+.+.+...| .+.+.... ..+...+.......
T Consensus 193 DEAHERsLn~DfLLg~Lk~lL~~-rpdlKvILmSATid~--e~fs~~F~~ap-vI~V~Gr~---~pVei~y~p~~~~~~~ 265 (1294)
T PRK11131 193 DEAHERSLNIDFILGYLKELLPR-RPDLKVIITSATIDP--ERFSRHFNNAP-IIEVSGRT---YPVEVRYRPIVEEADD 265 (1294)
T ss_pred cCccccccccchHHHHHHHhhhc-CCCceEEEeeCCCCH--HHHHHHcCCCC-EEEEcCcc---ccceEEEeecccccch
Confidence 9999 5777776543 3333222 245799999999974 45555554444 34443221 22334443332111
Q ss_pred hHHHHHHHHH------hhCCCCcEEEEeccchhHHHHHHHHhhCCCc---eeecCCCCCHHHHHHHHHHHhcCCccEEEE
Q psy9399 255 HKNRLLDYLL------RDKRVGQAVVFTATKRDADIIADRLNISGFL---AAPLHGDLHQNARNRTLENLRRGRIKILVA 325 (453)
Q Consensus 255 ~~~~~~~~l~------~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~---~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~ 325 (453)
...+.+..++ .....+.+|||+++..+++.+++.|...++. +..+||++++.+|.++++. .|..+||||
T Consensus 266 ~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVA 343 (1294)
T PRK11131 266 TERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLA 343 (1294)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEe
Confidence 0112222221 1345578999999999999999999987654 6789999999999999886 578899999
Q ss_pred eCCcccCCCCCCCcEEEEcCC---------------C---CChhHHHHHhhhccCCCCCccEEEEeChhhH
Q psy9399 326 TDVAARGIDVPAITHVFNYDL---------------P---KFPEDYVHRIGRTGRAGRNGFAVSLVNHAER 378 (453)
Q Consensus 326 T~~~~~Gvdi~~~~~Vi~~~~---------------~---~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 378 (453)
|+++++|+|+|++++||+++. | .|..+|.||+||+||. .+|.||.++++.+.
T Consensus 344 TNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~ 413 (1294)
T PRK11131 344 TNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDF 413 (1294)
T ss_pred ccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHH
Confidence 999999999999999999863 2 3557899999999999 78999999998654
No 89
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.98 E-value=2.6e-30 Score=227.69 Aligned_cols=202 Identities=45% Similarity=0.772 Sum_probs=180.2
Q ss_pred CCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccc
Q psy9399 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNN 82 (453)
Q Consensus 3 ~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 82 (453)
|+++++++.+.+.|..+|+..|+++|.++++.+.+++++++++|||+|||++|+++++..+....
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~--------------- 65 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP--------------- 65 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc---------------
Confidence 88999999999999999999999999999999999999999999999999999999998877631
Q ss_pred cchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHH
Q psy9399 83 KIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDH 162 (453)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~ 162 (453)
...+++++|++|+++|+.|+.+.++.+.... .+.+..++|+.........+..+++|+|+||+.+...
T Consensus 66 -----------~~~~~~viii~p~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~ 133 (203)
T cd00268 66 -----------KKDGPQALILAPTRELALQIAEVARKLGKHT-NLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDL 133 (203)
T ss_pred -----------ccCCceEEEEcCCHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHH
Confidence 1246689999999999999999999987654 3888889998887777666666889999999999999
Q ss_pred HhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEE
Q psy9399 163 MNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLIL 231 (453)
Q Consensus 163 l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~ 231 (453)
+......+.+++++|+||+|.+.+.++...+..+...++...+++++|||+++....+...++.++..+
T Consensus 134 l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 134 LERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred HHcCCCChhhCCEEEEeChHHhhccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 988877789999999999999998889999999999999899999999999998888888888877654
No 90
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.97 E-value=4.6e-29 Score=218.98 Aligned_cols=312 Identities=17% Similarity=0.184 Sum_probs=222.7
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCc
Q psy9399 23 KPTGVQEQAIPAAI----SGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP 98 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~----~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
.+++.|+.+.+.+. +.++.+|+|.||+|||......+...+.. |.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~-------------------------------G~ 145 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQ-------------------------------GG 145 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhc-------------------------------CC
Confidence 58999998877655 55789999999999999655444444433 77
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEE
Q psy9399 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178 (453)
Q Consensus 99 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIi 178 (453)
++++..|....+.+++.+++.-.. ...+..++|+..... ..+++|+|..+|+++ -+.++++|+
T Consensus 146 ~vciASPRvDVclEl~~Rlk~aF~---~~~I~~Lyg~S~~~f-------r~plvVaTtHQLlrF-------k~aFD~liI 208 (441)
T COG4098 146 RVCIASPRVDVCLELYPRLKQAFS---NCDIDLLYGDSDSYF-------RAPLVVATTHQLLRF-------KQAFDLLII 208 (441)
T ss_pred eEEEecCcccchHHHHHHHHHhhc---cCCeeeEecCCchhc-------cccEEEEehHHHHHH-------HhhccEEEE
Confidence 999999999999999988887542 467788888766332 258999999998884 357899999
Q ss_pred echhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccccccceEEEEEEcchhhHH-
Q psy9399 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKN- 257 (453)
Q Consensus 179 DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 257 (453)
||+|.+....-.....++..+......+|++|||++..++.-... ++-..+.........+...-.+.+...-..+.
T Consensus 209 DEVDAFP~~~d~~L~~Av~~ark~~g~~IylTATp~k~l~r~~~~--g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~ 286 (441)
T COG4098 209 DEVDAFPFSDDQSLQYAVKKARKKEGATIYLTATPTKKLERKILK--GNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQ 286 (441)
T ss_pred eccccccccCCHHHHHHHHHhhcccCceEEEecCChHHHHHHhhh--CCeeEeecchhhcCCCCCCCceEEeccHHHHhh
Confidence 999988755433444455566666677999999998766544332 22222333321111122222233332222221
Q ss_pred ------HHHHHHHh-hCCCCcEEEEeccchhHHHHHHHHhhC--CCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCC
Q psy9399 258 ------RLLDYLLR-DKRVGQAVVFTATKRDADIIADRLNIS--GFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDV 328 (453)
Q Consensus 258 ------~~~~~l~~-~~~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~ 328 (453)
.+...+.+ ...+.+++||+++.+.++.++..|+.. ...++.+|+. ...|.+..++|++|++.+|++|.+
T Consensus 287 r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTI 364 (441)
T COG4098 287 RNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTI 364 (441)
T ss_pred hccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeeh
Confidence 12222222 245579999999999999999999653 3456778876 446889999999999999999999
Q ss_pred cccCCCCCCCcEEEEcCCC--CChhHHHHHhhhccCCC--CCccEEEEeChhhHHHHHHHHH
Q psy9399 329 AARGIDVPAITHVFNYDLP--KFPEDYVHRIGRTGRAG--RNGFAVSLVNHAERMNIKKIER 386 (453)
Q Consensus 329 ~~~Gvdi~~~~~Vi~~~~~--~~~~~~~Q~~GR~~R~g--~~g~~~~~~~~~~~~~~~~~~~ 386 (453)
+++|+.+|++++.+.-.-. .+...++|.+||+||.- ..|.+..|.+.....+.++.++
T Consensus 365 LERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~~A~ke 426 (441)
T COG4098 365 LERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKSKAMKQARKE 426 (441)
T ss_pred hhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccchHHHHHHHHH
Confidence 9999999999997654433 67889999999999974 3388998888877776655443
No 91
>KOG0947|consensus
Probab=99.97 E-value=8.3e-30 Score=249.27 Aligned_cols=312 Identities=22% Similarity=0.248 Sum_probs=229.1
Q ss_pred hCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCC
Q psy9399 18 KVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ 97 (453)
Q Consensus 18 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (453)
...| +|..+|++|+-++..|..++|.|+|.+|||.++-.++...-. +.
T Consensus 293 ~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~-------------------------------h~ 340 (1248)
T KOG0947|consen 293 IYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQK-------------------------------HM 340 (1248)
T ss_pred hCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHh-------------------------------hc
Confidence 3566 699999999999999999999999999999987666543322 24
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEE
Q psy9399 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177 (453)
Q Consensus 98 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iI 177 (453)
-+++|-.|-++|..|-++.|+.-.. ++ ..++|+... ...+..+|+|.+.|..++.++..-++++..||
T Consensus 341 TR~iYTSPIKALSNQKfRDFk~tF~---Dv--gLlTGDvqi-------nPeAsCLIMTTEILRsMLYrgadliRDvE~VI 408 (1248)
T KOG0947|consen 341 TRTIYTSPIKALSNQKFRDFKETFG---DV--GLLTGDVQI-------NPEASCLIMTTEILRSMLYRGADLIRDVEFVI 408 (1248)
T ss_pred cceEecchhhhhccchHHHHHHhcc---cc--ceeecceee-------CCCcceEeehHHHHHHHHhcccchhhccceEE
Confidence 4899999999999998888876442 22 267776552 34578999999999999998887789999999
Q ss_pred EechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcC-CCeEEEecccccccccceEEEEEEc-----
Q psy9399 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITK-DPLILKVNSIEKKQKNITQSILFVD----- 251 (453)
Q Consensus 178 iDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----- 251 (453)
|||+|-+.|...+-.|+.++=++|.+.++|++|||.|+..+. +.|... +...+.+.+....+..+.+.+....
T Consensus 409 FDEVHYiND~eRGvVWEEViIMlP~HV~~IlLSATVPN~~EF-A~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~ki 487 (1248)
T KOG0947|consen 409 FDEVHYINDVERGVVWEEVIIMLPRHVNFILLSATVPNTLEF-ADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKI 487 (1248)
T ss_pred EeeeeecccccccccceeeeeeccccceEEEEeccCCChHHH-HHHhhhccCceEEEEecCCCccceEEEEEeccceehh
Confidence 999999999999999999999999999999999999875543 222211 1111111111111111111111000
Q ss_pred -------------------------------------------------------------ch--hhHHHHHHHHHhhCC
Q psy9399 252 -------------------------------------------------------------DI--LHKNRLLDYLLRDKR 268 (453)
Q Consensus 252 -------------------------------------------------------------~~--~~~~~~~~~l~~~~~ 268 (453)
.. .....++..+. ...
T Consensus 488 idq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~-k~~ 566 (1248)
T KOG0947|consen 488 IDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLR-KKN 566 (1248)
T ss_pred hcccchhhhhcchhhhhhhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHh-hcc
Confidence 00 01112222222 222
Q ss_pred CCcEEEEeccchhHHHHHHHHhhCCC---------------------------------------ceeecCCCCCHHHHH
Q psy9399 269 VGQAVVFTATKRDADIIADRLNISGF---------------------------------------LAAPLHGDLHQNARN 309 (453)
Q Consensus 269 ~~~~lvf~~~~~~~~~l~~~L~~~~~---------------------------------------~~~~~~~~~~~~~r~ 309 (453)
--+++|||.+++.|++.++.|...+. .++++||++-+--++
T Consensus 567 lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE 646 (1248)
T KOG0947|consen 567 LLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKE 646 (1248)
T ss_pred cCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHH
Confidence 35899999999999999999853221 278899999999999
Q ss_pred HHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCC---------CChhHHHHHhhhccCCCCC--ccEEEEeChh
Q psy9399 310 RTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLP---------KFPEDYVHRIGRTGRAGRN--GFAVSLVNHA 376 (453)
Q Consensus 310 ~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~---------~~~~~~~Q~~GR~~R~g~~--g~~~~~~~~~ 376 (453)
-+.-.|..|-++||+||.++++|||.|.-.+|+. +.. ..+.+|.|++|||||+|-+ |.+++++...
T Consensus 647 ~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~-Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 647 VVELLFQRGLVKVLFATETFAMGVNMPARTVVFS-SLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred HHHHHHhcCceEEEeehhhhhhhcCCCceeEEee-ehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 9999999999999999999999999987555553 322 3688999999999999976 8888777654
No 92
>KOG0948|consensus
Probab=99.97 E-value=1.1e-30 Score=249.63 Aligned_cols=308 Identities=20% Similarity=0.257 Sum_probs=232.6
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEE
Q psy9399 23 KPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLV 102 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 102 (453)
.+.|+|..++..+-++..++|.|.|.+|||.++-.++...+.. ..||+|
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~-------------------------------kQRVIY 177 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE-------------------------------KQRVIY 177 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh-------------------------------cCeEEe
Confidence 5889999999999999999999999999999988888887766 559999
Q ss_pred EcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEechh
Q psy9399 103 LTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182 (453)
Q Consensus 103 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h 182 (453)
-.|-++|..|-++++..-.+ .++..+|+.. +...+.-+|+|.+.|...+.++..-++.+.+|||||+|
T Consensus 178 TSPIKALSNQKYREl~~EF~-----DVGLMTGDVT-------InP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIH 245 (1041)
T KOG0948|consen 178 TSPIKALSNQKYRELLEEFK-----DVGLMTGDVT-------INPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIH 245 (1041)
T ss_pred eChhhhhcchhHHHHHHHhc-----ccceeeccee-------eCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeeh
Confidence 99999999999888776432 3344555443 22356789999999999999988889999999999999
Q ss_pred hhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHH--HHHhhcCCCeEEEecccccccccceEEE---------EEEc
Q psy9399 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGN--MAENITKDPLILKVNSIEKKQKNITQSI---------LFVD 251 (453)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~ 251 (453)
-|-|...+-.|+.-+-.+|.+.+.+++|||+|+..+. +.......|..+.... ..+..+.++. ..++
T Consensus 246 YMRDkERGVVWEETIIllP~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTd--yRPTPLQHyifP~ggdGlylvVD 323 (1041)
T KOG0948|consen 246 YMRDKERGVVWEETIILLPDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTD--YRPTPLQHYIFPAGGDGLYLVVD 323 (1041)
T ss_pred hccccccceeeeeeEEeccccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeec--CCCCcceeeeecCCCCeeEEEEe
Confidence 9999998888888888899999999999999985543 2222333443332221 1111121211 1111
Q ss_pred chh-------------------------------------------hHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHH
Q psy9399 252 DIL-------------------------------------------HKNRLLDYLLRDKRVGQAVVFTATKRDADIIADR 288 (453)
Q Consensus 252 ~~~-------------------------------------------~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~ 288 (453)
... +...++..++. ....+++||+.++++|+.++-.
T Consensus 324 ek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~-~~~~PVIvFSFSkkeCE~~Alq 402 (1041)
T KOG0948|consen 324 EKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIME-RNYLPVIVFSFSKKECEAYALQ 402 (1041)
T ss_pred cccccchHHHHHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHh-hcCCceEEEEecHhHHHHHHHh
Confidence 110 01112222222 3346899999999999999988
Q ss_pred HhhCCCc---------------------------------------eeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCc
Q psy9399 289 LNISGFL---------------------------------------AAPLHGDLHQNARNRTLENLRRGRIKILVATDVA 329 (453)
Q Consensus 289 L~~~~~~---------------------------------------~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~ 329 (453)
+.+..++ ++++|+++-+--++-+.-.|.+|-+++|+||.++
T Consensus 403 m~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETF 482 (1041)
T KOG0948|consen 403 MSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETF 482 (1041)
T ss_pred hccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhh
Confidence 7543222 7889999999999999999999999999999999
Q ss_pred ccCCCCCCCcEEEE----cCCC----CChhHHHHHhhhccCCCCC--ccEEEEeChh
Q psy9399 330 ARGIDVPAITHVFN----YDLP----KFPEDYVHRIGRTGRAGRN--GFAVSLVNHA 376 (453)
Q Consensus 330 ~~Gvdi~~~~~Vi~----~~~~----~~~~~~~Q~~GR~~R~g~~--g~~~~~~~~~ 376 (453)
+.|+|.|.-++|+- +|.. .+..+|+|+.|||||+|.+ |.|++.+++.
T Consensus 483 siGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 483 SIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred hhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 99999997666653 2211 2577899999999999977 8888888875
No 93
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=1.1e-28 Score=258.67 Aligned_cols=301 Identities=21% Similarity=0.286 Sum_probs=205.8
Q ss_pred HHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHH
Q psy9399 29 EQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRE 108 (453)
Q Consensus 29 ~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~ 108 (453)
.+.+.++.+++.++|+|+||||||.. +|.+..-.. ....+++++.-|.+-
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~----------------------------~~~~~~I~~tQPRRl 122 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELG----------------------------RGSHGLIGHTQPRRL 122 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcC----------------------------CCCCceEecCCccHH
Confidence 45677776777799999999999983 453322111 112336777889888
Q ss_pred HHHHHHHHHHHHhcccCCeeEEEEECC-CchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEechh-hhcc
Q psy9399 109 LALQVTAATERYGLYMKKIKAISILGG-MPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD-RMLD 186 (453)
Q Consensus 109 L~~q~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h-~~~~ 186 (453)
-+..+++.+.+... ..+....|. ..... .......|.++|++.|++.+.... .+..+++|||||+| +.++
T Consensus 123 AA~svA~RvA~elg----~~lG~~VGY~vR~~~---~~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~ 194 (1283)
T TIGR01967 123 AARTVAQRIAEELG----TPLGEKVGYKVRFHD---QVSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLN 194 (1283)
T ss_pred HHHHHHHHHHHHhC----CCcceEEeeEEcCCc---ccCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhcc
Confidence 88887776665432 222222221 11111 123467899999999999887654 47899999999999 4777
Q ss_pred cCChHH-HHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccccccceEEEEEEcch-----hhHH---
Q psy9399 187 MGFIND-IEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDI-----LHKN--- 257 (453)
Q Consensus 187 ~~~~~~-~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--- 257 (453)
.++.-. +..++.. ....++|+||||+.. ..+.+.+...|. +.+.... ..+...+...... ....
T Consensus 195 ~D~LL~lLk~il~~-rpdLKlIlmSATld~--~~fa~~F~~apv-I~V~Gr~---~PVev~Y~~~~~~~~~~~~~~~~~i 267 (1283)
T TIGR01967 195 IDFLLGYLKQLLPR-RPDLKIIITSATIDP--ERFSRHFNNAPI-IEVSGRT---YPVEVRYRPLVEEQEDDDLDQLEAI 267 (1283)
T ss_pred chhHHHHHHHHHhh-CCCCeEEEEeCCcCH--HHHHHHhcCCCE-EEECCCc---ccceeEEecccccccchhhhHHHHH
Confidence 776544 4444433 346789999999974 455555544443 3333211 1233333222110 1111
Q ss_pred -HHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCC---CceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCC
Q psy9399 258 -RLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISG---FLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGI 333 (453)
Q Consensus 258 -~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gv 333 (453)
..+..+.. ...+.+|||+++..+++.+++.|...+ ..+..+||+++.++|.++++.+ +..+|||||++++.|+
T Consensus 268 ~~~I~~l~~-~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSL 344 (1283)
T TIGR01967 268 LDAVDELFA-EGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSL 344 (1283)
T ss_pred HHHHHHHHh-hCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhcc
Confidence 12233332 345799999999999999999998754 4588899999999999986543 3468999999999999
Q ss_pred CCCCCcEEEEcCCC------------------CChhHHHHHhhhccCCCCCccEEEEeChhhH
Q psy9399 334 DVPAITHVFNYDLP------------------KFPEDYVHRIGRTGRAGRNGFAVSLVNHAER 378 (453)
Q Consensus 334 di~~~~~Vi~~~~~------------------~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 378 (453)
|+|++++||+.+.+ .|..++.||+||+||.+ +|.||.++++.+.
T Consensus 345 TIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 345 TVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred ccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHH
Confidence 99999999998844 25679999999999996 8999999987754
No 94
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.97 E-value=7.2e-29 Score=251.71 Aligned_cols=317 Identities=20% Similarity=0.251 Sum_probs=231.9
Q ss_pred HHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCC
Q psy9399 16 LVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKP 95 (453)
Q Consensus 16 l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (453)
....+| +|.++|++++..+..+.+++|+||||+|||.+.-.++...+.+
T Consensus 113 ~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~------------------------------ 161 (1041)
T COG4581 113 AREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD------------------------------ 161 (1041)
T ss_pred HHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc------------------------------
Confidence 345777 6999999999999999999999999999999888877776655
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccE
Q psy9399 96 AQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQI 175 (453)
Q Consensus 96 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 175 (453)
+.+++|..|.++|..|.++.+....... .-.+..++|+.+ ...++.++|+|.+.|.+.+.++...+..+..
T Consensus 162 -~qrviYTsPIKALsNQKyrdl~~~fgdv-~~~vGL~TGDv~-------IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ 232 (1041)
T COG4581 162 -GQRVIYTSPIKALSNQKYRDLLAKFGDV-ADMVGLMTGDVS-------INPDAPCLVMTTEILRNMLYRGSESLRDIEW 232 (1041)
T ss_pred -CCceEeccchhhhhhhHHHHHHHHhhhh-hhhccceeccee-------eCCCCceEEeeHHHHHHHhccCcccccccce
Confidence 5579999999999999988877654322 112345555544 2346789999999999999988778999999
Q ss_pred EEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHH--HHHHhhcCCCeEEEecccccccccceEEE------
Q psy9399 176 LVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVG--NMAENITKDPLILKVNSIEKKQKNITQSI------ 247 (453)
Q Consensus 176 iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 247 (453)
|||||+|.+.+...+..|+..+-.+|.+.+++++|||.++..+ .+.......+..+.... ..+....+.+
T Consensus 233 ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~--~RpvPL~~~~~~~~~l 310 (1041)
T COG4581 233 VVFDEVHYIGDRERGVVWEEVIILLPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTE--HRPVPLEHFVYVGKGL 310 (1041)
T ss_pred EEEEeeeeccccccchhHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeec--CCCCCeEEEEecCCce
Confidence 9999999999999999999999999999999999999986433 22222222332222111 0001111111
Q ss_pred -EEEcchhh-----------------------------------------------HHHHHHHHHhhCCCCcEEEEeccc
Q psy9399 248 -LFVDDILH-----------------------------------------------KNRLLDYLLRDKRVGQAVVFTATK 279 (453)
Q Consensus 248 -~~~~~~~~-----------------------------------------------~~~~~~~l~~~~~~~~~lvf~~~~ 279 (453)
..++.... ..+++.. +...+.-++++|+.++
T Consensus 311 ~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~-l~~~~~lP~I~F~FSr 389 (1041)
T COG4581 311 FDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNK-LDKDNLLPAIVFSFSR 389 (1041)
T ss_pred eeeecccccchhhcchhhhhhhhccchhccccCccccccccccccccCCcccccccchHHHhh-hhhhcCCceEEEEEch
Confidence 01111110 0011111 2223335899999999
Q ss_pred hhHHHHHHHHhh----------------------------CCC-------------ceeecCCCCCHHHHHHHHHHHhcC
Q psy9399 280 RDADIIADRLNI----------------------------SGF-------------LAAPLHGDLHQNARNRTLENLRRG 318 (453)
Q Consensus 280 ~~~~~l~~~L~~----------------------------~~~-------------~~~~~~~~~~~~~r~~~~~~f~~g 318 (453)
..|+..+..+.. .+. -++++|++|=+..|..+.+.|..|
T Consensus 390 ~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~G 469 (1041)
T COG4581 390 RGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEG 469 (1041)
T ss_pred hhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhcc
Confidence 999988887731 011 156799999999999999999999
Q ss_pred CccEEEEeCCcccCCCCCCCcEEEE----cC----CCCChhHHHHHhhhccCCCCC--ccEEEEeCh
Q psy9399 319 RIKILVATDVAARGIDVPAITHVFN----YD----LPKFPEDYVHRIGRTGRAGRN--GFAVSLVNH 375 (453)
Q Consensus 319 ~~~vLv~T~~~~~Gvdi~~~~~Vi~----~~----~~~~~~~~~Q~~GR~~R~g~~--g~~~~~~~~ 375 (453)
-+.|+++|.+++.|+|.|.-++|+- +| ...++.+|.|+.|||||.|.+ |.+++...+
T Consensus 470 LvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 470 LVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred ceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 9999999999999999997666542 22 234789999999999999987 778777433
No 95
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=3.3e-28 Score=244.25 Aligned_cols=319 Identities=17% Similarity=0.186 Sum_probs=223.3
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCc
Q psy9399 19 VGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP 98 (453)
Q Consensus 19 ~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
+|. .+.+.|--.--.+. ..-+..++||+|||++|.+|++..+.. +.
T Consensus 79 lg~-~~ydvQliGg~~Lh--~G~Iaem~TGeGKTL~a~Lpa~~~al~-------------------------------G~ 124 (896)
T PRK13104 79 LGL-RHFDVQLIGGMVLH--EGNIAEMRTGEGKTLVATLPAYLNAIS-------------------------------GR 124 (896)
T ss_pred cCC-CcchHHHhhhhhhc--cCccccccCCCCchHHHHHHHHHHHhc-------------------------------CC
Confidence 566 47777765444443 346899999999999999999977654 34
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHH-HHHHhcCC-CCC-----C
Q psy9399 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRL-IDHMNSGK-INF-----S 171 (453)
Q Consensus 99 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~~-~~~-----~ 171 (453)
.++|++||+.||.|.++++..+....+ +.+..++||.........+ .++|+++||+.| +++++.+. ..+ +
T Consensus 125 ~V~VvTpn~yLA~qd~e~m~~l~~~lG-Ltv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r 201 (896)
T PRK13104 125 GVHIVTVNDYLAKRDSQWMKPIYEFLG-LTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQR 201 (896)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhcccC-ceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhcc
Confidence 799999999999999999999988776 9999999998866654443 589999999999 99988762 223 5
Q ss_pred CccEEEEechhhhc-ccC---------------ChHHHHHHHhhCCC--------------C------------------
Q psy9399 172 HLQILVLDEADRML-DMG---------------FINDIEKIVDATPV--------------T------------------ 203 (453)
Q Consensus 172 ~~~~iIiDE~h~~~-~~~---------------~~~~~~~~~~~~~~--------------~------------------ 203 (453)
.+.++|+||+|.++ |.. .+..+..+...+.. .
T Consensus 202 ~l~~~IvDEaDsiLIDeArtPLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~ 281 (896)
T PRK13104 202 ELNFAIVDEVDSILIDEARTPLIISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELL 281 (896)
T ss_pred ccceEEeccHhhhhhhccCCceeeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHH
Confidence 78999999999754 110 01111111111100 0
Q ss_pred --------------------------------------------------------------------------------
Q psy9399 204 -------------------------------------------------------------------------------- 203 (453)
Q Consensus 204 -------------------------------------------------------------------------------- 203 (453)
T Consensus 282 ~~~~il~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~ 361 (896)
T PRK13104 282 TKAKLLDPGESLYHASNIMLMHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQ 361 (896)
T ss_pred HhCCccCCcccccCchhhhHHHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCC
Confidence
Q ss_pred ------------------ccEEEEEeecChHHHHHHHhhcCCCeEEEecccccccccceEEEEEEcchhhH-HHHHHHHH
Q psy9399 204 ------------------RQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHK-NRLLDYLL 264 (453)
Q Consensus 204 ------------------~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ 264 (453)
.++-+||+|.......+...+..+-..+... .+.. ........+.+...+ ..++..+.
T Consensus 362 ~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPtn-kp~~--R~d~~d~v~~t~~~k~~av~~~i~ 438 (896)
T PRK13104 362 NENQTLASITFQNFFRMYNKLSGMTGTADTEAYEFQQIYNLEVVVIPTN-RSMI--RKDEADLVYLTQADKFQAIIEDVR 438 (896)
T ss_pred CCceeeeeehHHHHHHhcchhccCCCCChhHHHHHHHHhCCCEEECCCC-CCcc--eecCCCeEEcCHHHHHHHHHHHHH
Confidence 0344444444333333333222221111111 1111 111111122222233 33444443
Q ss_pred h-hCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCC-----
Q psy9399 265 R-DKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAI----- 338 (453)
Q Consensus 265 ~-~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~----- 338 (453)
. +..+.++||||+|++.++.+++.|...|+++..+|+++...++..+.+.|+.|. |+|||+++++|+|+.--
T Consensus 439 ~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~ 516 (896)
T PRK13104 439 ECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAA 516 (896)
T ss_pred HHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhh
Confidence 3 356789999999999999999999999999999999999999999999999994 99999999999998521
Q ss_pred ---------------------------------cEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHH
Q psy9399 339 ---------------------------------THVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERM 379 (453)
Q Consensus 339 ---------------------------------~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 379 (453)
=+||-...+.|..--.|..||+||.|.+|.+-.+++-.|.-
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l 590 (896)
T PRK13104 517 DLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNL 590 (896)
T ss_pred hhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHH
Confidence 15777777778888889999999999999999998877653
No 96
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=2.6e-27 Score=237.57 Aligned_cols=319 Identities=19% Similarity=0.194 Sum_probs=231.0
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCc
Q psy9399 19 VGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP 98 (453)
Q Consensus 19 ~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
+|. .|++.|--..-.+..| -+..+.||+|||+++.+|++-.... +.
T Consensus 78 lg~-~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~-------------------------------G~ 123 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNALT-------------------------------GK 123 (830)
T ss_pred hCC-CCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHHc-------------------------------CC
Confidence 677 5889888766555544 5999999999999999999644333 33
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHH-HHHHhcCC------CCCC
Q psy9399 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRL-IDHMNSGK------INFS 171 (453)
Q Consensus 99 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~~------~~~~ 171 (453)
.+-|++|+..||.|.++++..+....+ ++++.+.++.+.......+ .++|+++|++.| +++++.+. ...+
T Consensus 124 ~V~IvTpn~yLA~rd~e~~~~l~~~LG-lsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r 200 (830)
T PRK12904 124 GVHVVTVNDYLAKRDAEWMGPLYEFLG-LSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQR 200 (830)
T ss_pred CEEEEecCHHHHHHHHHHHHHHHhhcC-CeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhccc
Confidence 688999999999999999999887776 9999999998877665554 489999999999 99887654 2357
Q ss_pred CccEEEEechhhhc-ccC---------------ChHHHHHHHhhCC----------------------------------
Q psy9399 172 HLQILVLDEADRML-DMG---------------FINDIEKIVDATP---------------------------------- 201 (453)
Q Consensus 172 ~~~~iIiDE~h~~~-~~~---------------~~~~~~~~~~~~~---------------------------------- 201 (453)
.+.++|+||+|.++ |.. .+..+..+...+.
T Consensus 201 ~~~~aIvDEaDsiLIDeArtpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly 280 (830)
T PRK12904 201 GLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLY 280 (830)
T ss_pred ccceEEEechhhheeccCCCceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCcccc
Confidence 78999999999754 110 0111111111100
Q ss_pred --------------------------------------------------------------------------------
Q psy9399 202 -------------------------------------------------------------------------------- 201 (453)
Q Consensus 202 -------------------------------------------------------------------------------- 201 (453)
T Consensus 281 ~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn 360 (830)
T PRK12904 281 DPENIALVHHLNQALRAHELFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQN 360 (830)
T ss_pred ChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHH
Confidence
Q ss_pred ---CCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccccccceEEEEEEcchhhHHHHHHHHHhh--CCCCcEEEEe
Q psy9399 202 ---VTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRD--KRVGQAVVFT 276 (453)
Q Consensus 202 ---~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~lvf~ 276 (453)
....+.+||+|.......+...+..+-..+... .+. ...........+...+...+...+.. ..+.++||||
T Consensus 361 ~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtn-kp~--~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft 437 (830)
T PRK12904 361 YFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTN-RPM--IRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGT 437 (830)
T ss_pred HHHhcchhcccCCCcHHHHHHHHHHhCCCEEEcCCC-CCe--eeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 001467777777554444444433332222111 111 11111122233344444444444433 5678999999
Q ss_pred ccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCC------------------
Q psy9399 277 ATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAI------------------ 338 (453)
Q Consensus 277 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~------------------ 338 (453)
+|++.++.+++.|...++++..+|++ +.+|+..+..|+.+...|+|||+++++|+|++--
T Consensus 438 ~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~ 515 (830)
T PRK12904 438 VSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQ 515 (830)
T ss_pred CcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHH
Confidence 99999999999999999999999996 7789999999999999999999999999999632
Q ss_pred --------------------cEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHH
Q psy9399 339 --------------------THVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERM 379 (453)
Q Consensus 339 --------------------~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 379 (453)
=+||....+.|..--.|..||+||.|.+|.+-.+++-.|.-
T Consensus 516 ~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~l 576 (830)
T PRK12904 516 IAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDL 576 (830)
T ss_pred HHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcHH
Confidence 15887888888888899999999999999999998877653
No 97
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.96 E-value=1.2e-27 Score=252.04 Aligned_cols=307 Identities=18% Similarity=0.244 Sum_probs=194.3
Q ss_pred CCcHHHHHHHHHHh----cC-CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCC
Q psy9399 23 KPTGVQEQAIPAAI----SG-RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ 97 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~----~~-~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (453)
.+|++|.+|+.++. ++ +.+++++|||||||.+++..+.. +.+ ....
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~-L~~----------------------------~~~~ 463 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYR-LLK----------------------------AKRF 463 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHH-HHh----------------------------cCcc
Confidence 58999999998876 23 56999999999999875544433 333 1124
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcC-----CCCCCC
Q psy9399 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSG-----KINFSH 172 (453)
Q Consensus 98 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~-----~~~~~~ 172 (453)
.++|+|+|+++|+.|+.+.+..+..... ......++...... ........|+|+|.+.|...+... ...+..
T Consensus 464 ~rVLfLvDR~~L~~Qa~~~F~~~~~~~~-~~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~ 540 (1123)
T PRK11448 464 RRILFLVDRSALGEQAEDAFKDTKIEGD-QTFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQ 540 (1123)
T ss_pred CeEEEEecHHHHHHHHHHHHHhcccccc-cchhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccccCCCCc
Confidence 5899999999999999999988642111 11111111111011 111235689999999997765321 134678
Q ss_pred ccEEEEechhhhccc---------------CChHHHHHHHhhCCCCccEEEEEeecChHHHHHHH--------------h
Q psy9399 173 LQILVLDEADRMLDM---------------GFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAE--------------N 223 (453)
Q Consensus 173 ~~~iIiDE~h~~~~~---------------~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~--------------~ 223 (453)
+++||+||||+-... .+...+..++..+. ...|++||||......+.. .
T Consensus 541 fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG 618 (1123)
T PRK11448 541 YDCIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYFD--AVKIGLTATPALHTTEIFGEPVYTYSYREAVIDG 618 (1123)
T ss_pred ccEEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhcC--ccEEEEecCCccchhHHhCCeeEEeeHHHHHhcC
Confidence 999999999985310 12456667776543 4689999999632221110 1
Q ss_pred hcC---CCeEEEeccc----ccccc-cce------EEE--EEEcchh-------h--------HHHHHHHHH---hhCCC
Q psy9399 224 ITK---DPLILKVNSI----EKKQK-NIT------QSI--LFVDDIL-------H--------KNRLLDYLL---RDKRV 269 (453)
Q Consensus 224 ~~~---~~~~~~~~~~----~~~~~-~~~------~~~--~~~~~~~-------~--------~~~~~~~l~---~~~~~ 269 (453)
++- .|..+..... ..... .+. ..+ ...++.. . ...++..+. .....
T Consensus 619 ~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~ 698 (1123)
T PRK11448 619 YLIDHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGE 698 (1123)
T ss_pred CcccCcCCEEEEEEeccccccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCC
Confidence 111 0111111000 00000 000 000 0000000 0 001112222 22344
Q ss_pred CcEEEEeccchhHHHHHHHHhhC------C---CceeecCCCCCHHHHHHHHHHHhcCCc-cEEEEeCCcccCCCCCCCc
Q psy9399 270 GQAVVFTATKRDADIIADRLNIS------G---FLAAPLHGDLHQNARNRTLENLRRGRI-KILVATDVAARGIDVPAIT 339 (453)
Q Consensus 270 ~~~lvf~~~~~~~~~l~~~L~~~------~---~~~~~~~~~~~~~~r~~~~~~f~~g~~-~vLv~T~~~~~Gvdi~~~~ 339 (453)
+++||||.++++|+.+++.|.+. + ..+..++|+++ ++..+++.|+++.. .|+|+++++.+|+|+|.+.
T Consensus 699 ~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~ 776 (1123)
T PRK11448 699 GKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSIC 776 (1123)
T ss_pred CcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCccccc
Confidence 79999999999999999887652 2 24566888875 46789999999887 5899999999999999999
Q ss_pred EEEEcCCCCChhHHHHHhhhccCCCC
Q psy9399 340 HVFNYDLPKFPEDYVHRIGRTGRAGR 365 (453)
Q Consensus 340 ~Vi~~~~~~~~~~~~Q~~GR~~R~g~ 365 (453)
+||+++++.|...|.|++||+.|...
T Consensus 777 ~vVf~rpvkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 777 NLVFLRRVRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred EEEEecCCCCHHHHHHHHhhhccCCc
Confidence 99999999999999999999999744
No 98
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=6.6e-27 Score=234.43 Aligned_cols=148 Identities=18% Similarity=0.274 Sum_probs=125.7
Q ss_pred CCCCCCHHHHHHHH-----hCCCCCC---cHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhh
Q psy9399 4 KSIGLHELVLKALV-----KVGYTKP---TGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKK 75 (453)
Q Consensus 4 ~~l~l~~~~~~~l~-----~~~~~~~---~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~ 75 (453)
+++++..++.+.+. ..|+..| +|+|.++++.+..+++++..++||+|||++|++|++..+..
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~---------- 134 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT---------- 134 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh----------
Confidence 35566777766666 5788888 99999999999999999999999999999999999987654
Q ss_pred ccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeC
Q psy9399 76 NLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLAT 155 (453)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T 155 (453)
+..++|++||++|+.|..+++..+....+ +++..+.||.....+...+ +++|+|+|
T Consensus 135 ---------------------g~~v~IVTpTrELA~Qdae~m~~L~k~lG-LsV~~i~GG~~~~eq~~~y--~~DIVygT 190 (970)
T PRK12899 135 ---------------------GKPVHLVTVNDYLAQRDCEWVGSVLRWLG-LTTGVLVSGSPLEKRKEIY--QCDVVYGT 190 (970)
T ss_pred ---------------------cCCeEEEeCCHHHHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHHHHHc--CCCEEEEC
Confidence 22589999999999999999999887765 8999999999988776554 58999999
Q ss_pred hHHH-HHHHhcCCCCCC-------CccEEEEechhhhc
Q psy9399 156 PGRL-IDHMNSGKINFS-------HLQILVLDEADRML 185 (453)
Q Consensus 156 ~~~l-~~~l~~~~~~~~-------~~~~iIiDE~h~~~ 185 (453)
|++| +++++.+...++ .+.++|+||||.++
T Consensus 191 PgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 191 ASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred CChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhh
Confidence 9999 999988755544 45899999999865
No 99
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=1.4e-26 Score=231.56 Aligned_cols=319 Identities=18% Similarity=0.200 Sum_probs=225.5
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCc
Q psy9399 19 VGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP 98 (453)
Q Consensus 19 ~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
+|. .|++.|.-..-.+..|+ +..+.||+|||+++.+|+...... |.
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~-------------------------------G~ 122 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT-------------------------------GK 122 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc-------------------------------CC
Confidence 677 58999987666665554 999999999999999998887665 66
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHH-HHHHhcCC------CCCC
Q psy9399 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRL-IDHMNSGK------INFS 171 (453)
Q Consensus 99 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~~------~~~~ 171 (453)
.+.+++|+--||.|-++++..+....+ +.++.+.++.........+ .+||+.+|...| +++|+.+. ...+
T Consensus 123 ~v~vvT~neyLA~Rd~e~~~~~~~~LG-l~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r 199 (796)
T PRK12906 123 GVHVVTVNEYLSSRDATEMGELYRWLG-LTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQR 199 (796)
T ss_pred CeEEEeccHHHHHhhHHHHHHHHHhcC-CeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhcc
Confidence 899999999999999999998887776 9999888877655544433 579999999876 55554431 1235
Q ss_pred CccEEEEechhhhc-ccC---------------ChHHHHHHHhhCC----------------------------------
Q psy9399 172 HLQILVLDEADRML-DMG---------------FINDIEKIVDATP---------------------------------- 201 (453)
Q Consensus 172 ~~~~iIiDE~h~~~-~~~---------------~~~~~~~~~~~~~---------------------------------- 201 (453)
.+.+.|+||+|.++ |.. .+..+..+...+.
T Consensus 200 ~~~~aIvDEvDSiLiDeartPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~ 279 (796)
T PRK12906 200 PLNYAIVDEVDSILIDEARTPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRK 279 (796)
T ss_pred CcceeeeccchheeeccCCCceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHH
Confidence 67899999999654 110 0000111100000
Q ss_pred --------------------------------------------------------------------------------
Q psy9399 202 -------------------------------------------------------------------------------- 201 (453)
Q Consensus 202 -------------------------------------------------------------------------------- 201 (453)
T Consensus 280 ~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e 359 (796)
T PRK12906 280 AEKLFGLDNLYDSENTALAHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEE 359 (796)
T ss_pred HHHHcCCccccCchhhhHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCC
Confidence
Q ss_pred --------------CCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccccccceEEEEEEcchhhHHHHHHHHH-h-
Q psy9399 202 --------------VTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLL-R- 265 (453)
Q Consensus 202 --------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~- 265 (453)
...++.+||+|....-..+.+.+..+ .. .++. .............+.+...+...+...+ .
T Consensus 360 ~~t~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~~iY~l~-vv-~IPt-nkp~~r~d~~d~i~~t~~~K~~al~~~i~~~ 436 (796)
T PRK12906 360 NQTLATITYQNFFRMYKKLSGMTGTAKTEEEEFREIYNME-VI-TIPT-NRPVIRKDSPDLLYPTLDSKFNAVVKEIKER 436 (796)
T ss_pred ceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCC-EE-EcCC-CCCeeeeeCCCeEEcCHHHHHHHHHHHHHHH
Confidence 00145666666654333333323222 21 1111 1110111111122223334444443333 2
Q ss_pred hCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCC---CCc---
Q psy9399 266 DKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVP---AIT--- 339 (453)
Q Consensus 266 ~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~---~~~--- 339 (453)
...+.++||||+|+..++.++..|.+.++++..+|+++...++..+...++.|. |+|||+++++|.|++ ++.
T Consensus 437 ~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~G 514 (796)
T PRK12906 437 HAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELG 514 (796)
T ss_pred HhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhC
Confidence 356789999999999999999999999999999999999888888888777776 999999999999995 788
Q ss_pred --EEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHH
Q psy9399 340 --HVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERM 379 (453)
Q Consensus 340 --~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 379 (453)
+||+++.|.+...+.|+.||+||.|.+|.+..+++..|.-
T Consensus 515 GLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~l 556 (796)
T PRK12906 515 GLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDL 556 (796)
T ss_pred CcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccchH
Confidence 9999999999999999999999999999999999887653
No 100
>KOG0950|consensus
Probab=99.95 E-value=3.9e-26 Score=225.11 Aligned_cols=334 Identities=18% Similarity=0.238 Sum_probs=228.5
Q ss_pred CCCHHHHHHHHhCCCCCCcHHHHHHHH--HHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccc
Q psy9399 7 GLHELVLKALVKVGYTKPTGVQEQAIP--AAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKI 84 (453)
Q Consensus 7 ~l~~~~~~~l~~~~~~~~~~~Q~~~~~--~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (453)
+++.......+..|+..+..||.+++. .++.+++.++.+||+.|||+++-+.++....-.
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~------------------ 268 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR------------------ 268 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH------------------
Confidence 344445556667899999999999865 477889999999999999999977776654431
Q ss_pred hhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHH--
Q psy9399 85 YTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDH-- 162 (453)
Q Consensus 85 ~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~-- 162 (453)
...++.+.|..+.+..-...+..+....+ +.+...+|...... ..+...+.|+|.++-...
T Consensus 269 ------------rr~~llilp~vsiv~Ek~~~l~~~~~~~G-~~ve~y~g~~~p~~----~~k~~sv~i~tiEkanslin 331 (1008)
T KOG0950|consen 269 ------------RRNVLLILPYVSIVQEKISALSPFSIDLG-FPVEEYAGRFPPEK----RRKRESVAIATIEKANSLIN 331 (1008)
T ss_pred ------------hhceeEecceeehhHHHHhhhhhhccccC-CcchhhcccCCCCC----cccceeeeeeehHhhHhHHH
Confidence 33689999999998887777777766555 66655555443221 123457999999884333
Q ss_pred --HhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhC-----CCCccEEEEEeecChHHHHHHHhhcCCCeEEEecc
Q psy9399 163 --MNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDAT-----PVTRQTMLFSATLDGIVGNMAENITKDPLILKVNS 235 (453)
Q Consensus 163 --l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~-----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 235 (453)
+..+ .+..+++||+||.|++.+.+.+..++.++... ....|+|+||||+++ +..+..++-..-..-...+
T Consensus 332 ~lie~g--~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N-~~lL~~~L~A~~y~t~fRP 408 (1008)
T KOG0950|consen 332 SLIEQG--RLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPN-NSLLQDWLDAFVYTTRFRP 408 (1008)
T ss_pred HHHhcC--CccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccccceeEeeeecccCC-hHHHHHHhhhhheecccCc
Confidence 2334 35779999999999999999888888776643 333579999999986 2233322221100000111
Q ss_pred cccccc-cceEEEEEEcchhhHHHHHHHHH-------------------h--hCCCCcEEEEeccchhHHHHHHHHhh--
Q psy9399 236 IEKKQK-NITQSILFVDDILHKNRLLDYLL-------------------R--DKRVGQAVVFTATKRDADIIADRLNI-- 291 (453)
Q Consensus 236 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~-------------------~--~~~~~~~lvf~~~~~~~~~l~~~L~~-- 291 (453)
.+.... .+...++... +..++..+- . ..++.++||||++++.|+.++..+..
T Consensus 409 v~L~E~ik~G~~i~~~~----r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~v 484 (1008)
T KOG0950|consen 409 VPLKEYIKPGSLIYESS----RNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKV 484 (1008)
T ss_pred ccchhccCCCcccccch----hhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHh
Confidence 110000 0111111110 112222211 0 02334699999999999988866521
Q ss_pred ------------------------------------CCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCC
Q psy9399 292 ------------------------------------SGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDV 335 (453)
Q Consensus 292 ------------------------------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi 335 (453)
....++++|++++.++|..+...|++|.+.|++||++++.|+|+
T Consensus 485 pk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNL 564 (1008)
T KOG0950|consen 485 PKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNL 564 (1008)
T ss_pred hHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcC
Confidence 01238899999999999999999999999999999999999999
Q ss_pred CCCcEEEEcC----CCCChhHHHHHhhhccCCCCC--ccEEEEeChhhHHHHH
Q psy9399 336 PAITHVFNYD----LPKFPEDYVHRIGRTGRAGRN--GFAVSLVNHAERMNIK 382 (453)
Q Consensus 336 ~~~~~Vi~~~----~~~~~~~~~Q~~GR~~R~g~~--g~~~~~~~~~~~~~~~ 382 (453)
|..++++-+. ...+..+|.||+|||||.|-+ |.+++.+...+...+.
T Consensus 565 PArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~ 617 (1008)
T KOG0950|consen 565 PARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVR 617 (1008)
T ss_pred CcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHH
Confidence 9888776433 234677899999999999876 8899998887764443
No 101
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.95 E-value=2.4e-25 Score=230.37 Aligned_cols=312 Identities=19% Similarity=0.236 Sum_probs=208.5
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCc
Q psy9399 23 KPTGVQEQAIPAAI----SGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP 98 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~----~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
.+++||.+++..+. ++.+.+++-.+|.|||+..+..+.. +... ....+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~-L~~~---------------------------~~~~g 220 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGY-LHEY---------------------------RGITG 220 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHH-HHHh---------------------------cCCCC
Confidence 68999999998875 5677999999999999876544433 2221 11234
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHH---HhcCCCCEEEeChHHHHHHHhcCCCCCCCccE
Q psy9399 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQ---LLSRNPEILLATPGRLIDHMNSGKINFSHLQI 175 (453)
Q Consensus 99 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 175 (453)
.+|||||. +++.||.+++.+|.. .+.+..++|......... ......+|+|+|++.+...... +.-..+++
T Consensus 221 p~LIVvP~-SlL~nW~~Ei~kw~p---~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~--L~k~~W~~ 294 (1033)
T PLN03142 221 PHMVVAPK-STLGNWMNEIRRFCP---VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA--LKRFSWRY 294 (1033)
T ss_pred CEEEEeCh-HHHHHHHHHHHHHCC---CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH--hccCCCCE
Confidence 78999997 667999999999873 466666666544322211 1234678999999998664321 12235789
Q ss_pred EEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecCh-HHH------------------HHHHhh------------
Q psy9399 176 LVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDG-IVG------------------NMAENI------------ 224 (453)
Q Consensus 176 iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~-~~~------------------~~~~~~------------ 224 (453)
||+||+|++.+.. ......+..+. ....+++||||-. .+. .+..++
T Consensus 295 VIvDEAHrIKN~~--Sklskalr~L~-a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i 371 (1033)
T PLN03142 295 IIIDEAHRIKNEN--SLLSKTMRLFS-TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVV 371 (1033)
T ss_pred EEEcCccccCCHH--HHHHHHHHHhh-cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHH
Confidence 9999999987654 22233333333 3357899999821 000 000000
Q ss_pred ----------------------cCCC--eEEEeccc--ccc--------------c----ccc-----------eEEEEE
Q psy9399 225 ----------------------TKDP--LILKVNSI--EKK--------------Q----KNI-----------TQSILF 249 (453)
Q Consensus 225 ----------------------~~~~--~~~~~~~~--~~~--------------~----~~~-----------~~~~~~ 249 (453)
+... ..+.+... ... . ..+ .+.+..
T Consensus 372 ~~L~~~L~pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~ 451 (1033)
T PLN03142 372 QQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLF 451 (1033)
T ss_pred HHHHHHhhHHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhh
Confidence 0000 00000000 000 0 000 000000
Q ss_pred --------------EcchhhHHHHHHHHHhh--CCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHH
Q psy9399 250 --------------VDDILHKNRLLDYLLRD--KRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLE 313 (453)
Q Consensus 250 --------------~~~~~~~~~~~~~l~~~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 313 (453)
.-..+.+..++..++.. ..+.++|||+.....++.+.++|...++.++.++|+++..+|..+++
T Consensus 452 ~~~ep~~~~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id 531 (1033)
T PLN03142 452 QGAEPGPPYTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASID 531 (1033)
T ss_pred hcccccCcccchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHH
Confidence 00112344455555543 35679999999999999999999999999999999999999999999
Q ss_pred HHhcCC---ccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEE
Q psy9399 314 NLRRGR---IKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVS 371 (453)
Q Consensus 314 ~f~~g~---~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~ 371 (453)
.|.+.. .-+|++|.+++.|+|+..+++||++|++|++....|++||+.|.|+...|.+
T Consensus 532 ~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~V 592 (1033)
T PLN03142 532 AFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQV 592 (1033)
T ss_pred HhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEE
Confidence 997632 3478999999999999999999999999999999999999999998865543
No 102
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.94 E-value=8.1e-26 Score=193.11 Aligned_cols=164 Identities=36% Similarity=0.565 Sum_probs=138.4
Q ss_pred cHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEc
Q psy9399 25 TGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLT 104 (453)
Q Consensus 25 ~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 104 (453)
|++|.++++.+.+++++++.||||+|||++++.+++..+.+. ...++++++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-----------------------------~~~~~lii~ 51 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-----------------------------KDARVLIIV 51 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-----------------------------SSSEEEEEE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-----------------------------CCceEEEEe
Confidence 689999999999999999999999999999999999887762 234899999
Q ss_pred CcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchH-HHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEechhh
Q psy9399 105 PTRELALQVTAATERYGLYMKKIKAISILGGMPYL-RQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADR 183 (453)
Q Consensus 105 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h~ 183 (453)
|+++|+.|+.+.+..+.... .+++..++++.... .....+..+++|+|+||++|...+......+.++++||+||+|.
T Consensus 52 P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~ 130 (169)
T PF00270_consen 52 PTRALAEQQFERLRKFFSNT-NVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHH 130 (169)
T ss_dssp SSHHHHHHHHHHHHHHTTTT-TSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHH
T ss_pred eccccccccccccccccccc-ccccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccc
Confidence 99999999999999988763 47888889888755 34444456799999999999999988655777799999999999
Q ss_pred hcccCChHHHHHHHhhCCC--CccEEEEEeecChHHH
Q psy9399 184 MLDMGFINDIEKIVDATPV--TRQTMLFSATLDGIVG 218 (453)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~--~~~~i~~SAT~~~~~~ 218 (453)
+.++.+...+..+...+.. ..+++++|||++..++
T Consensus 131 l~~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~~~~~ 167 (169)
T PF00270_consen 131 LSDETFRAMLKSILRRLKRFKNIQIILLSATLPSNVE 167 (169)
T ss_dssp HHHTTHHHHHHHHHHHSHTTTTSEEEEEESSSTHHHH
T ss_pred cccccHHHHHHHHHHHhcCCCCCcEEEEeeCCChhHh
Confidence 9988888888888777633 4789999999985544
No 103
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.94 E-value=1.3e-25 Score=230.92 Aligned_cols=324 Identities=18% Similarity=0.202 Sum_probs=209.5
Q ss_pred CCcHHHHHHHHHHhcC---C-cEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCc
Q psy9399 23 KPTGVQEQAIPAAISG---R-DLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP 98 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~~~---~-~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
...++|..++..+... . .+++.||||+|||.+.+.++...+... .....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~---------------------------~~~~~ 247 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK---------------------------IKLKS 247 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc---------------------------ccccc
Confidence 3488999999888754 4 688999999999999999998876652 11356
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHH-----h---------cCCCCEEEeChHHHHHH-H
Q psy9399 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQL-----L---------SRNPEILLATPGRLIDH-M 163 (453)
Q Consensus 99 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---------~~~~~Ilv~T~~~l~~~-l 163 (453)
+++++.|++++++++.+.+..+......... ..++.....-.... . .....+.++|+...... .
T Consensus 248 r~i~vlP~~t~ie~~~~r~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~ 326 (733)
T COG1203 248 RVIYVLPFRTIIEDMYRRAKEIFGLFSVIGK-SLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSV 326 (733)
T ss_pred eEEEEccHHHHHHHHHHHHHhhhcccccccc-cccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhc
Confidence 9999999999999999999886644331111 01222111110000 0 00123444444444331 1
Q ss_pred hcCCCC-C--CCccEEEEechhhhcccCChHHHHHHHhh-CCCCccEEEEEeecChHHHHHHHhhcCCCeEEEeccc---
Q psy9399 164 NSGKIN-F--SHLQILVLDEADRMLDMGFINDIEKIVDA-TPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI--- 236 (453)
Q Consensus 164 ~~~~~~-~--~~~~~iIiDE~h~~~~~~~~~~~~~~~~~-~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--- 236 (453)
...... + --.+++|+||+|.+.+......+.+++.. ...+..+|++|||+|+.+.............+.....
T Consensus 327 ~~~~~~~~~~l~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~ 406 (733)
T COG1203 327 KGFKFEFLALLLTSLVILDEVHLYADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCP 406 (733)
T ss_pred cccchHHHHHHHhhchhhccHHhhcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccc
Confidence 111111 1 12368999999998877323333333332 3345679999999999988887777665544433211
Q ss_pred ccccccceEE-EEEEcchhhHHHHHH-HHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHH
Q psy9399 237 EKKQKNITQS-ILFVDDILHKNRLLD-YLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLEN 314 (453)
Q Consensus 237 ~~~~~~~~~~-~~~~~~~~~~~~~~~-~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~ 314 (453)
......+... ......... ..... .......+.+++|.|||+..|.++++.|+..+.+++.+||.+...+|.+.++.
T Consensus 407 ~~~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~ 485 (733)
T COG1203 407 KEDEPGLKRKERVDVEDGPQ-EELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERE 485 (733)
T ss_pred cccccccccccchhhhhhhh-HhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHH
Confidence 0010111111 011101100 01111 11223556799999999999999999999887789999999999999988875
Q ss_pred Hh----cCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCC--CCccEEEEeChhhH
Q psy9399 315 LR----RGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAG--RNGFAVSLVNHAER 378 (453)
Q Consensus 315 f~----~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g--~~g~~~~~~~~~~~ 378 (453)
+. .++..|+||||+++.|+|+ +.+++|-- +...++++||+||++|.| ..|.++++......
T Consensus 486 l~~~~~~~~~~IvVaTQVIEagvDi-dfd~mITe--~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~ 552 (733)
T COG1203 486 LKKLFKQNEGFIVVATQVIEAGVDI-DFDVLITE--LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEERG 552 (733)
T ss_pred HHHHHhccCCeEEEEeeEEEEEecc-ccCeeeec--CCCHHHHHHHHHHHhhcccccCCceeEeecccCC
Confidence 54 5678899999999999999 57776532 234799999999999999 55777777665543
No 104
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=2.6e-25 Score=222.73 Aligned_cols=319 Identities=16% Similarity=0.173 Sum_probs=221.3
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCc
Q psy9399 19 VGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP 98 (453)
Q Consensus 19 ~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
+|. .|++.|--.--.+ .+.-+..++||.|||+++.+|++..... +.
T Consensus 79 lgm-~~ydVQliGgl~L--~~G~IaEm~TGEGKTL~a~lp~~l~al~-------------------------------g~ 124 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVL--DSNRIAEMRTGEGKTLTATLPAYLNALT-------------------------------GK 124 (908)
T ss_pred hCC-CcCchHHhcchHh--cCCccccccCCCCchHHHHHHHHHHHhc-------------------------------CC
Confidence 566 4777776443333 3457899999999999999999876654 44
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHH-HHHHhcC-CCC-----CC
Q psy9399 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRL-IDHMNSG-KIN-----FS 171 (453)
Q Consensus 99 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~-~~~-----~~ 171 (453)
.+.|++|+..|+.|..+++..+....+ +.+..+.++......... =.+||+++|++.| +++++.+ ... .+
T Consensus 125 ~VhIvT~ndyLA~RD~e~m~~l~~~lG-lsv~~i~~~~~~~~r~~~--Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr 201 (908)
T PRK13107 125 GVHVITVNDYLARRDAENNRPLFEFLG-LTVGINVAGLGQQEKKAA--YNADITYGTNNEFGFDYLRDNMAFSPQERVQR 201 (908)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHHhcC-CeEEEecCCCCHHHHHhc--CCCCeEEeCCCcccchhhhccCccchhhhhcc
Confidence 699999999999999999999887776 999988888775433222 2679999999999 8888776 222 26
Q ss_pred CccEEEEechhhhcccC----------------ChHHHHHHHhhCC-------------------C--------------
Q psy9399 172 HLQILVLDEADRMLDMG----------------FINDIEKIVDATP-------------------V-------------- 202 (453)
Q Consensus 172 ~~~~iIiDE~h~~~~~~----------------~~~~~~~~~~~~~-------------------~-------------- 202 (453)
.+.++|+||+|.++-.. .+..+..+...+. .
T Consensus 202 ~~~~aIvDEvDsiLiDEArtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~ 281 (908)
T PRK13107 202 PLHYALIDEVDSILIDEARTPLIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEK 281 (908)
T ss_pred ccceeeecchhhhccccCCCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHH
Confidence 78899999999765211 0000000000000 0
Q ss_pred --------------------------------------------------------------------------------
Q psy9399 203 -------------------------------------------------------------------------------- 202 (453)
Q Consensus 203 -------------------------------------------------------------------------------- 202 (453)
T Consensus 282 ~e~~l~~~~~~~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE 361 (908)
T PRK13107 282 VENLLIERGMLAEGDSLYSAANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKE 361 (908)
T ss_pred HHHHHHhCCcccCcccccCchhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhc
Confidence
Q ss_pred ----------------------CccEEEEEeecChHHHHHHHhhcCCCeEEEecccccccccceEEEEEEcchhhHHHHH
Q psy9399 203 ----------------------TRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLL 260 (453)
Q Consensus 203 ----------------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (453)
..++.+||+|.......+.+.+..+-..+... .+......... +..........++
T Consensus 362 ~v~I~~e~~t~AsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTn-kp~~R~d~~d~-iy~t~~~K~~Aii 439 (908)
T PRK13107 362 GVHIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTN-RPMVRKDMADL-VYLTADEKYQAII 439 (908)
T ss_pred CCCCCCCceeeeeehHHHHHHhhhHhhcccCCChHHHHHHHHHhCCCEEECCCC-CCccceeCCCc-EEeCHHHHHHHHH
Confidence 00344555554433333333222221111111 11111111111 1222223333455
Q ss_pred HHHHh-hCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCC--
Q psy9399 261 DYLLR-DKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPA-- 337 (453)
Q Consensus 261 ~~l~~-~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~-- 337 (453)
..+.. +..+.++||||+|++.++.++..|...++++..+|++++..++..+.+.|+.|. |+|||+++++|.|+.-
T Consensus 440 ~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLgg 517 (908)
T PRK13107 440 KDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGG 517 (908)
T ss_pred HHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCC
Confidence 55544 356779999999999999999999999999999999999999999999999998 9999999999999862
Q ss_pred -----------------------------------CcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhH
Q psy9399 338 -----------------------------------ITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAER 378 (453)
Q Consensus 338 -----------------------------------~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 378 (453)
-=+||-...+.|..-=.|..||+||.|.+|.+..+++-.|.
T Consensus 518 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 518 NWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred chHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 12678778888888888999999999999999999887765
No 105
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.93 E-value=2.1e-23 Score=219.05 Aligned_cols=332 Identities=18% Similarity=0.226 Sum_probs=207.4
Q ss_pred CHHHHHHHHhCCCCCCcHHHHHHHH----HHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccc
Q psy9399 9 HELVLKALVKVGYTKPTGVQEQAIP----AAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKI 84 (453)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~Q~~~~~----~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (453)
++.+.+.+...|+. +|+.|.+.+. .+.+++++++.||||+|||++|++|++..+..
T Consensus 232 ~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~------------------- 291 (850)
T TIGR01407 232 SSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAIT------------------- 291 (850)
T ss_pred cHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcC-------------------
Confidence 34666777778884 9999998666 45567889999999999999999999876442
Q ss_pred hhhhhhcccCCCCceEEEEcCcHHHHHHHHH-HHHHHhcccC-CeeEEEEECCCchH-----------------------
Q psy9399 85 YTHKERLRFKPAQPRMLVLTPTRELALQVTA-ATERYGLYMK-KIKAISILGGMPYL----------------------- 139 (453)
Q Consensus 85 ~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~-~~~~~~~~~~-~~~~~~~~~~~~~~----------------------- 139 (453)
+.+++|.+||++|..|+.. .+..+....+ .++++.+.|+....
T Consensus 292 ------------~~~vvi~t~t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~ 359 (850)
T TIGR01407 292 ------------EKPVVISTNTKVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKM 359 (850)
T ss_pred ------------CCeEEEEeCcHHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHH
Confidence 3489999999999999865 4544433221 25555555433220
Q ss_pred ------------------------------------------------HHHHHhcCCCCEEEeChHHHHHHHhcCCCCCC
Q psy9399 140 ------------------------------------------------RQMQLLSRNPEILLATPGRLIDHMNSGKINFS 171 (453)
Q Consensus 140 ------------------------------------------------~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~ 171 (453)
...+.....++|+|+++..|+..+.....-+.
T Consensus 360 ~~~~wl~~T~tGD~~el~~~~~~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp 439 (850)
T TIGR01407 360 QVLVWLTETETGDLDELNLKGGNKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFP 439 (850)
T ss_pred HHHHHhccCCccCHhhccCCCcchhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCC
Confidence 00011112468999999999888755443456
Q ss_pred CccEEEEechhhhcccC-------C-----hH------------------------------------------------
Q psy9399 172 HLQILVLDEADRMLDMG-------F-----IN------------------------------------------------ 191 (453)
Q Consensus 172 ~~~~iIiDE~h~~~~~~-------~-----~~------------------------------------------------ 191 (453)
...++||||||++.+.. + ..
T Consensus 440 ~~~~lIiDEAH~L~d~a~~~~~~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 519 (850)
T TIGR01407 440 SFRDLIIDEAHHLPDIAENQLQEELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKL 519 (850)
T ss_pred CCCEEEEECcchHHHHHHHHhcceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 67899999999875310 0 00
Q ss_pred ----------------HHHHHHhh------------------------------------------------CCCCccEE
Q psy9399 192 ----------------DIEKIVDA------------------------------------------------TPVTRQTM 207 (453)
Q Consensus 192 ----------------~~~~~~~~------------------------------------------------~~~~~~~i 207 (453)
.+...... .+....+|
T Consensus 520 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~i 599 (850)
T TIGR01407 520 NKLLQIFSELSHKTVDQLRKFDLALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLI 599 (850)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEE
Confidence 00000000 01123689
Q ss_pred EEEeecCh--HHHHHHHhhcCCC-eEEEecccccccccceEEEEEE--cc-----hhh-HHH---HHHHHHhhCCCCcEE
Q psy9399 208 LFSATLDG--IVGNMAENITKDP-LILKVNSIEKKQKNITQSILFV--DD-----ILH-KNR---LLDYLLRDKRVGQAV 273 (453)
Q Consensus 208 ~~SAT~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~-~~~---~~~~l~~~~~~~~~l 273 (453)
++|||++. ....+...+..+. ........+.....-...++.. .. ... ... .+..++.. .++++|
T Consensus 600 l~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~-~~g~~L 678 (850)
T TIGR01407 600 FTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAI-TSPKIL 678 (850)
T ss_pred EEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh-cCCCEE
Confidence 99999962 2344444333222 1122211111100111111111 10 011 112 22233333 447999
Q ss_pred EEeccchhHHHHHHHHhh----CCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCc--EEEEcCCC
Q psy9399 274 VFTATKRDADIIADRLNI----SGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAIT--HVFNYDLP 347 (453)
Q Consensus 274 vf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~--~Vi~~~~~ 347 (453)
||++|.+.++.+++.|.. .++.+ +..+.. ..|.++++.|++|+..||+||+.+++|||+|+.. +||+...|
T Consensus 679 VlftS~~~l~~v~~~L~~~~~~~~~~~--l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LP 755 (850)
T TIGR01407 679 VLFTSYEMLHMVYDMLNELPEFEGYEV--LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLP 755 (850)
T ss_pred EEeCCHHHHHHHHHHHhhhccccCceE--EecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCC
Confidence 999999999999999975 23333 223332 4688999999999999999999999999999765 47777766
Q ss_pred CC------------------------------hhHHHHHhhhccCCCCCccEEEEeChh
Q psy9399 348 KF------------------------------PEDYVHRIGRTGRAGRNGFAVSLVNHA 376 (453)
Q Consensus 348 ~~------------------------------~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 376 (453)
.. ...+.|.+||+.|...+..++++++.+
T Consensus 756 f~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 756 FANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccc
Confidence 42 123459999999998886677777775
No 106
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.92 E-value=2.6e-23 Score=210.19 Aligned_cols=310 Identities=19% Similarity=0.224 Sum_probs=213.2
Q ss_pred cHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEc
Q psy9399 25 TGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLT 104 (453)
Q Consensus 25 ~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 104 (453)
+....+.+.++.++.-++|+||||||||...-..+++... ..++.+.+.-
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~------------------------------~~~g~I~~tQ 101 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL------------------------------GIAGKIGCTQ 101 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc------------------------------ccCCeEEecC
Confidence 5566677888888888999999999999754444444321 2355888999
Q ss_pred CcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEechhhh
Q psy9399 105 PTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRM 184 (453)
Q Consensus 105 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h~~ 184 (453)
|.|--+..+++.+..-.....+-.++...-.+ ........|-++|.+.|.+.+.... .++.+++||+||+|+=
T Consensus 102 PRRlAArsvA~RvAeel~~~~G~~VGY~iRfe------~~~s~~Trik~mTdGiLlrei~~D~-~Ls~ys~vIiDEaHER 174 (845)
T COG1643 102 PRRLAARSVAERVAEELGEKLGETVGYSIRFE------SKVSPRTRIKVMTDGILLREIQNDP-LLSGYSVVIIDEAHER 174 (845)
T ss_pred chHHHHHHHHHHHHHHhCCCcCceeeEEEEee------ccCCCCceeEEeccHHHHHHHhhCc-ccccCCEEEEcchhhh
Confidence 99977788877766543222112232222111 1123356899999999999888766 4899999999999952
Q ss_pred -cccCCh-HHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccccccceEEEEEEcchhh-HHHHHH
Q psy9399 185 -LDMGFI-NDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILH-KNRLLD 261 (453)
Q Consensus 185 -~~~~~~-~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 261 (453)
++.++. ..+..++...+...++|.||||+.. +.+.. ++.+...+.+.... ..+...+........ ....+.
T Consensus 175 Sl~tDilLgllk~~~~~rr~DLKiIimSATld~--~rfs~-~f~~apvi~i~GR~---fPVei~Y~~~~~~d~~l~~ai~ 248 (845)
T COG1643 175 SLNTDILLGLLKDLLARRRDDLKLIIMSATLDA--ERFSA-YFGNAPVIEIEGRT---YPVEIRYLPEAEADYILLDAIV 248 (845)
T ss_pred hHHHHHHHHHHHHHHhhcCCCceEEEEecccCH--HHHHH-HcCCCCEEEecCCc---cceEEEecCCCCcchhHHHHHH
Confidence 233322 2333445556667899999999874 44444 44433333333211 223223322211111 111111
Q ss_pred H---HHhhCCCCcEEEEeccchhHHHHHHHHhh----CCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCC
Q psy9399 262 Y---LLRDKRVGQAVVFTATKRDADIIADRLNI----SGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGID 334 (453)
Q Consensus 262 ~---l~~~~~~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvd 334 (453)
. .......|-+|||.+...+.+.+++.|.+ ....++.+||.++.+++.++++--..|..+|+++|++++.++-
T Consensus 249 ~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLT 328 (845)
T COG1643 249 AAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLT 328 (845)
T ss_pred HHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEcccccccee
Confidence 1 12234568899999999999999999997 3577899999999999999888777787779999999999999
Q ss_pred CCCCcEEEEcCCC------------------CChhHHHHHhhhccCCCCCccEEEEeChhhH
Q psy9399 335 VPAITHVFNYDLP------------------KFPEDYVHRIGRTGRAGRNGFAVSLVNHAER 378 (453)
Q Consensus 335 i~~~~~Vi~~~~~------------------~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 378 (453)
+|++..||+-+.. -|-.+..||.|||||- .+|.||-++++.+.
T Consensus 329 I~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~~ 389 (845)
T COG1643 329 IPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRT-GPGICYRLYSEEDF 389 (845)
T ss_pred eCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccC-CCceEEEecCHHHH
Confidence 9999999985543 2566788999999998 77999999998653
No 107
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.92 E-value=8.3e-23 Score=189.81 Aligned_cols=173 Identities=21% Similarity=0.257 Sum_probs=130.3
Q ss_pred ccEEEEEeecChHHHHHHHhhcCCCeEEEecccccccccceEEEEEEcchhhHHHHHHHHHh-hCCCCcEEEEeccchhH
Q psy9399 204 RQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLR-DKRVGQAVVFTATKRDA 282 (453)
Q Consensus 204 ~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~lvf~~~~~~~ 282 (453)
.|+|++||||.++-..... +.-....+.+.. .+.-.....+......+++..+.. ...+.++||-+-|++.|
T Consensus 387 ~q~i~VSATPg~~E~e~s~---~~vveQiIRPTG----LlDP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmA 459 (663)
T COG0556 387 PQTIYVSATPGDYELEQSG---GNVVEQIIRPTG----LLDPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKMA 459 (663)
T ss_pred CCEEEEECCCChHHHHhcc---CceeEEeecCCC----CCCCceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHHH
Confidence 4899999998763222111 111111111111 111112223334455566666655 35568999999999999
Q ss_pred HHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCC-----CChhHHHHHh
Q psy9399 283 DIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLP-----KFPEDYVHRI 357 (453)
Q Consensus 283 ~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~-----~~~~~~~Q~~ 357 (453)
+.+.++|.+.|+++.++|++...-+|..++..++.|+.+|||+-+.+.+|+|+|.|++|.++|.. .|..+++|-+
T Consensus 460 EdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtI 539 (663)
T COG0556 460 EDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTI 539 (663)
T ss_pred HHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998865 5788999999
Q ss_pred hhccCCCCCccEEEEeChhhHHHHHHH
Q psy9399 358 GRTGRAGRNGFAVSLVNHAERMNIKKI 384 (453)
Q Consensus 358 GR~~R~g~~g~~~~~~~~~~~~~~~~~ 384 (453)
|||+|+ -.|.++.+.+.-...+-+++
T Consensus 540 GRAARN-~~GkvIlYAD~iT~sM~~Ai 565 (663)
T COG0556 540 GRAARN-VNGKVILYADKITDSMQKAI 565 (663)
T ss_pred HHHhhc-cCCeEEEEchhhhHHHHHHH
Confidence 999997 66999999887655444444
No 108
>KOG0922|consensus
Probab=99.91 E-value=1.5e-22 Score=193.62 Aligned_cols=308 Identities=19% Similarity=0.236 Sum_probs=206.4
Q ss_pred cHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEc
Q psy9399 25 TGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLT 104 (453)
Q Consensus 25 ~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 104 (453)
..+-.+.+..+.+++-++|.|+||||||.-.--.+.+.-. ...+++.+--
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~------------------------------~~~g~I~~TQ 102 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGF------------------------------ASSGKIACTQ 102 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhccc------------------------------ccCCcEEeec
Confidence 3444567777878888999999999999743333332211 1234588889
Q ss_pred CcHHHHHHHHHHHHH-HhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEechhh
Q psy9399 105 PTRELALQVTAATER-YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADR 183 (453)
Q Consensus 105 P~~~L~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h~ 183 (453)
|.|--+..++++... .+...+ -.++...-- .+.......|.++|.+.|++.+...+ .+.++++||+||||.
T Consensus 103 PRRVAavslA~RVAeE~~~~lG-~~VGY~IRF------ed~ts~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHE 174 (674)
T KOG0922|consen 103 PRRVAAVSLAKRVAEEMGCQLG-EEVGYTIRF------EDSTSKDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHE 174 (674)
T ss_pred CchHHHHHHHHHHHHHhCCCcC-ceeeeEEEe------cccCCCceeEEEecchHHHHHHhcCC-ccccccEEEEechhh
Confidence 999888888776654 333222 222221111 11112346799999999999887666 489999999999994
Q ss_pred hc-ccC-ChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccccccceEEEEEEcchhhHHH---
Q psy9399 184 ML-DMG-FINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNR--- 258 (453)
Q Consensus 184 ~~-~~~-~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 258 (453)
=. ..+ ..-.++.++. .+...++|.+|||+.. ..+ ..++.....+.+... ...+...+...+.......
T Consensus 175 Rsl~TDiLlGlLKki~~-~R~~LklIimSATlda--~kf-S~yF~~a~i~~i~GR---~fPVei~y~~~p~~dYv~a~~~ 247 (674)
T KOG0922|consen 175 RSLHTDILLGLLKKILK-KRPDLKLIIMSATLDA--EKF-SEYFNNAPILTIPGR---TFPVEILYLKEPTADYVDAALI 247 (674)
T ss_pred hhhHHHHHHHHHHHHHh-cCCCceEEEEeeeecH--HHH-HHHhcCCceEeecCC---CCceeEEeccCCchhhHHHHHH
Confidence 21 111 1222222222 2345689999999873 333 334444333333321 1223333333222222222
Q ss_pred HHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhC------CC--ceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcc
Q psy9399 259 LLDYLLRDKRVGQAVVFTATKRDADIIADRLNIS------GF--LAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAA 330 (453)
Q Consensus 259 ~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~------~~--~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~ 330 (453)
.+..+....+.+-+|||....++.+.+++.|.+. +. -+..+||.++.+++.++.+.-..|..+|+++|++++
T Consensus 248 tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAE 327 (674)
T KOG0922|consen 248 TVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAE 327 (674)
T ss_pred HHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceee
Confidence 3334444567789999999999999999999763 11 246799999999999999988889999999999999
Q ss_pred cCCCCCCCcEEEEcCC------------------CCChhHHHHHhhhccCCCCCccEEEEeChhhH
Q psy9399 331 RGIDVPAITHVFNYDL------------------PKFPEDYVHRIGRTGRAGRNGFAVSLVNHAER 378 (453)
Q Consensus 331 ~Gvdi~~~~~Vi~~~~------------------~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 378 (453)
..+-+|++..||+-+. |-|..+-.||.|||||. .+|.|+.++++.+.
T Consensus 328 TSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt-~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 328 TSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRT-GPGKCYRLYTESAY 392 (674)
T ss_pred eeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCC-CCceEEEeeeHHHH
Confidence 9999999999997553 23677788999999998 67999999988763
No 109
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.91 E-value=6.2e-22 Score=196.72 Aligned_cols=286 Identities=20% Similarity=0.291 Sum_probs=193.2
Q ss_pred HHHHh-CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcc
Q psy9399 14 KALVK-VGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLR 92 (453)
Q Consensus 14 ~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (453)
+..++ .|+ .|+..|.--...+..|+++-+.||||.|||.-.++..+-...+
T Consensus 73 ~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~k--------------------------- 124 (1187)
T COG1110 73 EFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKK--------------------------- 124 (1187)
T ss_pred HHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhc---------------------------
Confidence 34444 466 7999999999999999999999999999997444444433222
Q ss_pred cCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEE-EECCCchHHH----HHHhcCCCCEEEeChHHHHHHHhcCC
Q psy9399 93 FKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAIS-ILGGMPYLRQ----MQLLSRNPEILLATPGRLIDHMNSGK 167 (453)
Q Consensus 93 ~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~Ilv~T~~~l~~~l~~~~ 167 (453)
+.++++++||+.|+.|+.+.+..+........+.. .++..+..+. .+...++.||+|+|..-|...+..-.
T Consensus 125 ----gkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~ 200 (1187)
T COG1110 125 ----GKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELS 200 (1187)
T ss_pred ----CCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhc
Confidence 56999999999999999999999875544344433 4444333332 23334578999999887766554221
Q ss_pred CCCCCccEEEEechhhhcccC-----------ChH-------HHHHHHhh------------------------CCCCcc
Q psy9399 168 INFSHLQILVLDEADRMLDMG-----------FIN-------DIEKIVDA------------------------TPVTRQ 205 (453)
Q Consensus 168 ~~~~~~~~iIiDE~h~~~~~~-----------~~~-------~~~~~~~~------------------------~~~~~~ 205 (453)
--++++|++|.+|.++..+ |.. .+..+... -.+..+
T Consensus 201 --~~kFdfifVDDVDA~LkaskNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~ 278 (1187)
T COG1110 201 --KLKFDFIFVDDVDAILKASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGI 278 (1187)
T ss_pred --ccCCCEEEEccHHHHHhccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCce
Confidence 1468999999999766432 111 01111111 123457
Q ss_pred EEEEEeecChHH--HHHHHhhcCCCeEEEecccccccccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEecc---ch
Q psy9399 206 TMLFSATLDGIV--GNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTAT---KR 280 (453)
Q Consensus 206 ~i~~SAT~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~---~~ 280 (453)
++..|||..+.- ..+...+++- .+........++...+... ...+.+..+++..+ ...|||++. ++
T Consensus 279 LvvsSATg~~rg~R~~LfReLlgF----evG~~~~~LRNIvD~y~~~----~~~e~~~elvk~lG-~GgLIfV~~d~G~e 349 (1187)
T COG1110 279 LVVSSATGKPRGSRLKLFRELLGF----EVGSGGEGLRNIVDIYVES----ESLEKVVELVKKLG-DGGLIFVPIDYGRE 349 (1187)
T ss_pred EEEeeccCCCCCchHHHHHHHhCC----ccCccchhhhheeeeeccC----ccHHHHHHHHHHhC-CCeEEEEEcHHhHH
Confidence 999999975322 1233333321 2222222223444333333 22333334444444 367999999 89
Q ss_pred hHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEe----CCcccCCCCCC-CcEEEEcCCC
Q psy9399 281 DADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVAT----DVAARGIDVPA-ITHVFNYDLP 347 (453)
Q Consensus 281 ~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T----~~~~~Gvdi~~-~~~Vi~~~~~ 347 (453)
.+++++++|+..|+++..+|+. +...++.|..|++++||+. .++-+|+|+|. ++.+|+++.|
T Consensus 350 ~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 350 KAEELAEYLRSHGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred HHHHHHHHHHhcCceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 9999999999999999999985 4778999999999999987 46889999995 7889998887
No 110
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.91 E-value=7.2e-22 Score=201.17 Aligned_cols=299 Identities=16% Similarity=0.149 Sum_probs=178.5
Q ss_pred CCcHHHHHHHHHHh----c------CCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcc
Q psy9399 23 KPTGVQEQAIPAAI----S------GRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLR 92 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~----~------~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (453)
-++++|..|+..+. . .+..+++++||||||++++..+...+.
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~---------------------------- 289 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALE---------------------------- 289 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHh----------------------------
Confidence 37899999988864 2 245999999999999987666654432
Q ss_pred cCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhc-CCCCEEEeChHHHHHHHhcC--CCC
Q psy9399 93 FKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLS-RNPEILLATPGRLIDHMNSG--KIN 169 (453)
Q Consensus 93 ~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~T~~~l~~~l~~~--~~~ 169 (453)
....+++|+++|+.+|..|+.+.+..++... . .+..........+. ....|+|+|.++|...+... ...
T Consensus 290 -~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~~~--~-----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~ 361 (667)
T TIGR00348 290 -LLKNPKVFFVVDRRELDYQLMKEFQSLQKDC--A-----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFP 361 (667)
T ss_pred -hcCCCeEEEEECcHHHHHHHHHHHHhhCCCC--C-----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccC
Confidence 2235699999999999999999999876311 1 01111111112222 24689999999997644321 111
Q ss_pred CCCc-cEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhc----CCCeEEEecccccccccce
Q psy9399 170 FSHL-QILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENIT----KDPLILKVNSIEKKQKNIT 244 (453)
Q Consensus 170 ~~~~-~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 244 (453)
.... .+||+||||+.....+.. .+...+|. ..++++||||...........+ +++. ......+.-.....
T Consensus 362 ~~~~~~lvIvDEaHrs~~~~~~~---~l~~~~p~-a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i-~~Y~~~~AI~dG~~ 436 (667)
T TIGR00348 362 VDRKEVVVIFDEAHRSQYGELAK---NLKKALKN-ASFFGFTGTPIFKKDRDTSLTFAYVFGRYL-HRYFITDAIRDGLT 436 (667)
T ss_pred CCCCCEEEEEEcCccccchHHHH---HHHhhCCC-CcEEEEeCCCcccccccccccccCCCCCeE-EEeeHHHHhhcCCe
Confidence 1111 389999999865433322 22344543 5799999998532111000111 1111 11110000000000
Q ss_pred E--EEEE------Ecch---------------------------------------hhHHHHHHHHHhh------CCCCc
Q psy9399 245 Q--SILF------VDDI---------------------------------------LHKNRLLDYLLRD------KRVGQ 271 (453)
Q Consensus 245 ~--~~~~------~~~~---------------------------------------~~~~~~~~~l~~~------~~~~~ 271 (453)
. .+.. .+.. .....+...++++ ..+++
T Consensus 437 ~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~k 516 (667)
T TIGR00348 437 VKIDYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFK 516 (667)
T ss_pred eeEEEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCc
Confidence 0 0000 0000 0000111111111 22479
Q ss_pred EEEEeccchhHHHHHHHHhhC-----CCceeecCCCCCHH---------------------HHHHHHHHHhc-CCccEEE
Q psy9399 272 AVVFTATKRDADIIADRLNIS-----GFLAAPLHGDLHQN---------------------ARNRTLENLRR-GRIKILV 324 (453)
Q Consensus 272 ~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~---------------------~r~~~~~~f~~-g~~~vLv 324 (453)
++|||.++.+|..+++.|.+. +.....+++..+.. ....++++|++ +.++|||
T Consensus 517 amvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilI 596 (667)
T TIGR00348 517 AMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLI 596 (667)
T ss_pred eeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEE
Confidence 999999999999999988653 23345555543322 12468888976 6889999
Q ss_pred EeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCC
Q psy9399 325 ATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRA 363 (453)
Q Consensus 325 ~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~ 363 (453)
+++++..|+|.|.+++++...+-.+ ..++|.+||+.|.
T Consensus 597 VvdmllTGFDaP~l~tLyldKplk~-h~LlQai~R~nR~ 634 (667)
T TIGR00348 597 VVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNRI 634 (667)
T ss_pred EEcccccccCCCccceEEEeccccc-cHHHHHHHHhccc
Confidence 9999999999999999987666554 5689999999994
No 111
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.90 E-value=2.5e-22 Score=196.56 Aligned_cols=294 Identities=21% Similarity=0.267 Sum_probs=188.4
Q ss_pred CCcHHHHHHHHHHh----cCCc-EEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCC
Q psy9399 23 KPTGVQEQAIPAAI----SGRD-LIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ 97 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~----~~~~-~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (453)
.+|++|..|+..+. +|++ +++++.||+|||.++...+ .+|.+ ....
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii-~rL~r----------------------------~~~~ 215 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAII-DRLIK----------------------------SGWV 215 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHH-HHHHh----------------------------cchh
Confidence 68999999988765 4443 9999999999999765444 44444 2235
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcC-----CCCCCC
Q psy9399 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSG-----KINFSH 172 (453)
Q Consensus 98 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~-----~~~~~~ 172 (453)
.++|+|+-+++|+.|.+..+.++.......+...-..+.. .+.|.++|...+....... .+....
T Consensus 216 KRVLFLaDR~~Lv~QA~~af~~~~P~~~~~n~i~~~~~~~----------s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~ 285 (875)
T COG4096 216 KRVLFLADRNALVDQAYGAFEDFLPFGTKMNKIEDKKGDT----------SSEIYLSTYQTMTGRIEQKEDEYRRFGPGF 285 (875)
T ss_pred heeeEEechHHHHHHHHHHHHHhCCCccceeeeecccCCc----------ceeEEEeehHHHHhhhhccccccccCCCCc
Confidence 5999999999999999999988875544344433333222 5789999999998877655 233456
Q ss_pred ccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhc-CCCeEE------------------Ee
Q psy9399 173 LQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENIT-KDPLIL------------------KV 233 (453)
Q Consensus 173 ~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~------------------~~ 233 (453)
+++||+||||+-.... +..++..+..- .+++||||......-...++ +.|... .+
T Consensus 286 FDlIvIDEaHRgi~~~----~~~I~dYFdA~--~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i 359 (875)
T COG4096 286 FDLIVIDEAHRGIYSE----WSSILDYFDAA--TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRI 359 (875)
T ss_pred eeEEEechhhhhHHhh----hHHHHHHHHHH--HHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEE
Confidence 8999999999855433 33444433222 35559998653332222222 222111 11
Q ss_pred c----ccccccccc-------eEEE------E----------EEcchhhHHHHHHHHHhh--CC--CCcEEEEeccchhH
Q psy9399 234 N----SIEKKQKNI-------TQSI------L----------FVDDILHKNRLLDYLLRD--KR--VGQAVVFTATKRDA 282 (453)
Q Consensus 234 ~----~~~~~~~~~-------~~~~------~----------~~~~~~~~~~~~~~l~~~--~~--~~~~lvf~~~~~~~ 282 (453)
. .....+... .... . ...........+...+.. .+ -+|+||||.+..+|
T Consensus 360 ~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHA 439 (875)
T COG4096 360 DTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHA 439 (875)
T ss_pred eeeccccCcCcCccchhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHH
Confidence 0 000000000 0000 0 000001111223333333 22 46899999999999
Q ss_pred HHHHHHHhhC-----CCceeecCCCCCHHHHHHHHHHHhc-CC-ccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHH
Q psy9399 283 DIIADRLNIS-----GFLAAPLHGDLHQNARNRTLENLRR-GR-IKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVH 355 (453)
Q Consensus 283 ~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~-g~-~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q 355 (453)
+.+.+.|.+. +--+..+.|+-... ...++.|.. .. .+|.|+.+++..|+|+|.|-+++++..-.|..-|.|
T Consensus 440 e~i~~~~~~~ype~~~~~a~~IT~d~~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~Q 517 (875)
T COG4096 440 ERIREALVNEYPEYNGRYAMKITGDAEQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQ 517 (875)
T ss_pred HHHHHHHHHhCccccCceEEEEeccchhh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHH
Confidence 9999999763 34466777764332 344555554 33 456677799999999999999999999999999999
Q ss_pred HhhhccCC
Q psy9399 356 RIGRTGRA 363 (453)
Q Consensus 356 ~~GR~~R~ 363 (453)
++||+-|.
T Consensus 518 MvGRGTRl 525 (875)
T COG4096 518 MVGRGTRL 525 (875)
T ss_pred HhcCcccc
Confidence 99999996
No 112
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.90 E-value=6.3e-21 Score=192.03 Aligned_cols=129 Identities=26% Similarity=0.385 Sum_probs=113.9
Q ss_pred HHHHHHHHhh-CCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCC
Q psy9399 257 NRLLDYLLRD-KRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDV 335 (453)
Q Consensus 257 ~~~~~~l~~~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi 335 (453)
..++..+... ..+.+++|||++++.++.+++.|...|+++..+||+++..+|.++++.|++|++.|||||+.+++|+|+
T Consensus 429 ~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDi 508 (655)
T TIGR00631 429 DDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDL 508 (655)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeee
Confidence 3445555443 456799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcC-----CCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHH
Q psy9399 336 PAITHVFNYD-----LPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIER 386 (453)
Q Consensus 336 ~~~~~Vi~~~-----~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 386 (453)
|++++|++++ .|.+..+|+||+||+||. ..|.++++.+..+......+.+
T Consensus 509 P~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 509 PEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred CCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHH
Confidence 9999999988 688999999999999998 6799999999877665555544
No 113
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.90 E-value=2.5e-21 Score=200.53 Aligned_cols=125 Identities=18% Similarity=0.100 Sum_probs=90.2
Q ss_pred CCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCC--CcEEEEc
Q psy9399 267 KRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPA--ITHVFNY 344 (453)
Q Consensus 267 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~--~~~Vi~~ 344 (453)
..+++++|+++|.+..+.+++.|......+ ...|... .+.+++++|++++..||++|+.+++|||+|+ ...||..
T Consensus 645 ~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~ 721 (820)
T PRK07246 645 QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVIT 721 (820)
T ss_pred hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEe
Confidence 345899999999999999999997654444 4444322 2567899999998899999999999999974 4556777
Q ss_pred CCCCC------------------------------hhHHHHHhhhccCCCCCccEEEEeChh--hHHHHHHHHHHhhcCC
Q psy9399 345 DLPKF------------------------------PEDYVHRIGRTGRAGRNGFAVSLVNHA--ERMNIKKIERFTKQQI 392 (453)
Q Consensus 345 ~~~~~------------------------------~~~~~Q~~GR~~R~g~~g~~~~~~~~~--~~~~~~~~~~~~~~~~ 392 (453)
..|.. ...+.|.+||..|...+..++++++.+ .+.+.+.+.+.+...+
T Consensus 722 kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~~~k~Yg~~~l~sLP~~~ 801 (820)
T PRK07246 722 RLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRILTKSYGKQILASLAEEF 801 (820)
T ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCcccccHHHHHHHHhCCCCC
Confidence 76642 123569999999998776677777776 3444555545444433
Q ss_pred Cc
Q psy9399 393 PI 394 (453)
Q Consensus 393 ~~ 394 (453)
+.
T Consensus 802 ~~ 803 (820)
T PRK07246 802 LI 803 (820)
T ss_pred cc
Confidence 33
No 114
>KOG1123|consensus
Probab=99.90 E-value=7.3e-23 Score=188.27 Aligned_cols=332 Identities=18% Similarity=0.169 Sum_probs=222.6
Q ss_pred CCcHHHHHHHHHHhcC---CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCce
Q psy9399 23 KPTGVQEQAIPAAISG---RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPR 99 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~~~---~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (453)
.++|||+.++.....+ +..+|+.|+|+|||++-.-++... ..+
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti----------------------------------kK~ 347 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI----------------------------------KKS 347 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee----------------------------------ccc
Confidence 5799999999998854 458999999999999765544321 338
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcC--------CCCCC
Q psy9399 100 MLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSG--------KINFS 171 (453)
Q Consensus 100 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~--------~~~~~ 171 (453)
+|++|.+...++||..++..|....+ -.++..+.... .....++.|+|+|+.++..--.+. .+.-+
T Consensus 348 clvLcts~VSVeQWkqQfk~wsti~d-~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~ 421 (776)
T KOG1123|consen 348 CLVLCTSAVSVEQWKQQFKQWSTIQD-DQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGR 421 (776)
T ss_pred EEEEecCccCHHHHHHHHHhhcccCc-cceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcC
Confidence 99999999999999999999876544 44555554433 223457899999998864322111 12246
Q ss_pred CccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHH--------------------HHHHHhhcCCCeEE
Q psy9399 172 HLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV--------------------GNMAENITKDPLIL 231 (453)
Q Consensus 172 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~--------------------~~~~~~~~~~~~~~ 231 (453)
.++++++||+|.....-|...+..+...+ .+++|||+-... +...+....+-.+.
T Consensus 422 EWGllllDEVHvvPA~MFRRVlsiv~aHc-----KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCa 496 (776)
T KOG1123|consen 422 EWGLLLLDEVHVVPAKMFRRVLSIVQAHC-----KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCA 496 (776)
T ss_pred eeeeEEeehhccchHHHHHHHHHHHHHHh-----hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeee
Confidence 79999999999988887776666555555 499999983211 11111111111111
Q ss_pred Eec----c---cccccccceEEEEEEcchhhHHHHHHHHHhh--CCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCC
Q psy9399 232 KVN----S---IEKKQKNITQSILFVDDILHKNRLLDYLLRD--KRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302 (453)
Q Consensus 232 ~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~ 302 (453)
.+- . .+.-..+........--.+.+....+.|++. .++.+++||....-...+.+-.|.+ .++.|.
T Consensus 497 EVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~ 571 (776)
T KOG1123|consen 497 EVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK-----PFIYGP 571 (776)
T ss_pred eeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC-----ceEECC
Confidence 110 0 0000011111111222234555666666653 4678999999998888888887765 457899
Q ss_pred CCHHHHHHHHHHHhc-CCccEEEEeCCcccCCCCCCCcEEEEcCCC-CChhHHHHHhhhccCCCC------CccEEEEeC
Q psy9399 303 LHQNARNRTLENLRR-GRIKILVATDVAARGIDVPAITHVFNYDLP-KFPEDYVHRIGRTGRAGR------NGFAVSLVN 374 (453)
Q Consensus 303 ~~~~~r~~~~~~f~~-g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~-~~~~~~~Q~~GR~~R~g~------~g~~~~~~~ 374 (453)
.++.+|.++++.|+- ..++.++-+.+....+|+|..+++|+.+.. .|-.+-.||.||..|..+ +...|.+++
T Consensus 572 Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS 651 (776)
T KOG1123|consen 572 TSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVS 651 (776)
T ss_pred CchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeee
Confidence 999999999999994 568889999999999999999999998865 467788999999888622 145566666
Q ss_pred hhhHHHHH--HHHHH-hhcCCCccccCCCCcch
Q psy9399 375 HAERMNIK--KIERF-TKQQIPIEVINGFEPKK 404 (453)
Q Consensus 375 ~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~ 404 (453)
....++.. .-++| ..+......+..++...
T Consensus 652 ~DTqEM~YStKRQ~FLidQGYsfkVit~L~gme 684 (776)
T KOG1123|consen 652 KDTQEMYYSTKRQQFLIDQGYSFKVITNLPGME 684 (776)
T ss_pred cchHHHHhhhhhhhhhhhcCceEEEeecCCCcC
Confidence 65444332 22334 56667777776666543
No 115
>KOG0385|consensus
Probab=99.90 E-value=9.5e-22 Score=189.46 Aligned_cols=313 Identities=19% Similarity=0.237 Sum_probs=212.7
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCc
Q psy9399 23 KPTGVQEQAIPAAI----SGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP 98 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~----~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
.+++||.+.++.+. +|-+.++.-.+|-|||+-. +..+..+... ..-.+
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~---------------------------~~~~G 218 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGR---------------------------KGIPG 218 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHh---------------------------cCCCC
Confidence 68999999888765 5667999999999999753 3333333331 11244
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHH---hcCCCCEEEeChHHHHHHHhcCCCCCCCccE
Q psy9399 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQL---LSRNPEILLATPGRLIDHMNSGKINFSHLQI 175 (453)
Q Consensus 99 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 175 (453)
..||+||-..| .+|.+++.+|. +.++++.++|.......... .....+|+|||++..+..-. .+.--++.+
T Consensus 219 PfLVi~P~StL-~NW~~Ef~rf~---P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~--~lk~~~W~y 292 (971)
T KOG0385|consen 219 PFLVIAPKSTL-DNWMNEFKRFT---PSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS--FLKKFNWRY 292 (971)
T ss_pred CeEEEeeHhhH-HHHHHHHHHhC---CCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH--HHhcCCceE
Confidence 78999999777 77888888887 46888888887644333221 22367999999999866421 111245789
Q ss_pred EEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecCh-------------------HHHHHH---------------
Q psy9399 176 LVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDG-------------------IVGNMA--------------- 221 (453)
Q Consensus 176 iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~-------------------~~~~~~--------------- 221 (453)
+||||+|++.+.. ..+..++..+.. ...+++|+||-. ..+.+.
T Consensus 293 lvIDEaHRiKN~~--s~L~~~lr~f~~-~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v 369 (971)
T KOG0385|consen 293 LVIDEAHRIKNEK--SKLSKILREFKT-DNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELV 369 (971)
T ss_pred EEechhhhhcchh--hHHHHHHHHhcc-cceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHH
Confidence 9999999998765 222233333322 235778888710 000000
Q ss_pred ------------------------------------------------------------------------HhhcCCCe
Q psy9399 222 ------------------------------------------------------------------------ENITKDPL 229 (453)
Q Consensus 222 ------------------------------------------------------------------------~~~~~~~~ 229 (453)
+..+..|.
T Consensus 370 ~~Lh~vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPY 449 (971)
T KOG0385|consen 370 SRLHKVLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPY 449 (971)
T ss_pred HHHHhhhhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCcc
Confidence 01111111
Q ss_pred EEEecccccccccceEEEEEEcchhhHHHHHHHHHhh--CCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHH
Q psy9399 230 ILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRD--KRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNA 307 (453)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 307 (453)
.+...... .+... ....-..+.+..+++.++.. ..+.++|||.......+-+..++--+++..+.+.|.++.++
T Consensus 450 LF~g~ePg-~pytt---dehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~ee 525 (971)
T KOG0385|consen 450 LFDGAEPG-PPYTT---DEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEE 525 (971)
T ss_pred ccCCCCCC-CCCCc---chHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHH
Confidence 11110000 00000 00000123345566666663 66789999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC---ccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEE--EEeChh
Q psy9399 308 RNRTLENLRRGR---IKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAV--SLVNHA 376 (453)
Q Consensus 308 r~~~~~~f~~g~---~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~--~~~~~~ 376 (453)
|...++.|.... .=.|++|.+.+-|+|+..++.||.||..|++..=+|.+-||+|.|+...|. .+++..
T Consensus 526 R~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLiten 599 (971)
T KOG0385|consen 526 REDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITEN 599 (971)
T ss_pred HHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccc
Confidence 999999998654 226799999999999999999999999999999999999999999886554 455544
No 116
>KOG0949|consensus
Probab=99.90 E-value=5e-22 Score=195.58 Aligned_cols=160 Identities=18% Similarity=0.195 Sum_probs=112.6
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEE
Q psy9399 23 KPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLV 102 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 102 (453)
.|..||.+.+..+-.++.++|.|||.+|||++-..++-..+... ...-+|+
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRes-----------------------------D~~VVIy 561 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRES-----------------------------DSDVVIY 561 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhc-----------------------------CCCEEEE
Confidence 47899999999999999999999999999986555555444432 2447999
Q ss_pred EcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcC---CCCCCCccEEEEe
Q psy9399 103 LTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSG---KINFSHLQILVLD 179 (453)
Q Consensus 103 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~---~~~~~~~~~iIiD 179 (453)
+.|+++|+.|+..................+.|... ++.+...-.|+|+|+-|+.+-..+... .....+++++|+|
T Consensus 562 vaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~g~lt--qEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfD 639 (1330)
T KOG0949|consen 562 VAPTKALVNQVSANVYARFDTKTFLRGVSLLGDLT--QEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFD 639 (1330)
T ss_pred ecchHHHhhhhhHHHHHhhccCccccchhhHhhhh--HHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEec
Confidence 99999999998766554332111122222222221 222222236899999999998877663 3346889999999
Q ss_pred chhhhcccCChHHHHHHHhhCCCCccEEEEEeecCh
Q psy9399 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDG 215 (453)
Q Consensus 180 E~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~ 215 (453)
|+|.+.+..-.-.++.+....+ +.++++|||+.+
T Consensus 640 EVH~iG~~ed~l~~Eqll~li~--CP~L~LSATigN 673 (1330)
T KOG0949|consen 640 EVHLIGNEEDGLLWEQLLLLIP--CPFLVLSATIGN 673 (1330)
T ss_pred hhhhccccccchHHHHHHHhcC--CCeeEEecccCC
Confidence 9999887665555666655543 569999999864
No 117
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=4.1e-20 Score=181.46 Aligned_cols=320 Identities=17% Similarity=0.151 Sum_probs=219.3
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCc
Q psy9399 19 VGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP 98 (453)
Q Consensus 19 ~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
+|+ .|++.|--..-.+..| -+..+.||.|||+++.+|+...... +.
T Consensus 75 lg~-r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL~-------------------------------G~ 120 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYALQ-------------------------------GR 120 (764)
T ss_pred cCC-CcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHHc-------------------------------CC
Confidence 677 5999999888888766 4779999999999999998877665 56
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHH-HHHHhcCC------CCCC
Q psy9399 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRL-IDHMNSGK------INFS 171 (453)
Q Consensus 99 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~~------~~~~ 171 (453)
.+.+++|+--|+.|-++++..+....+ +.+..+.++....+....+ .+||+.+|...| +++|+.+. ...+
T Consensus 121 ~VhvvT~NdyLA~RDae~m~~ly~~LG-Lsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R 197 (764)
T PRK12326 121 RVHVITVNDYLARRDAEWMGPLYEALG-LTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSP 197 (764)
T ss_pred CeEEEcCCHHHHHHHHHHHHHHHHhcC-CEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCC
Confidence 899999999999999999988877766 8999888887765544444 579999998775 44444322 1235
Q ss_pred CccEEEEechhhhc-ccC--------------ChHHHHHHHhhCC-----------------------------------
Q psy9399 172 HLQILVLDEADRML-DMG--------------FINDIEKIVDATP----------------------------------- 201 (453)
Q Consensus 172 ~~~~iIiDE~h~~~-~~~--------------~~~~~~~~~~~~~----------------------------------- 201 (453)
.+.++|+||+|.++ |.. ....+..+...+.
T Consensus 198 ~~~faIVDEvDSiLIDeArtPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~ 277 (764)
T PRK12326 198 NPDVAIIDEADSVLVDEALVPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYS 277 (764)
T ss_pred ccceeeecchhhheeccccCceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccC
Confidence 68899999999643 110 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q psy9399 202 -------------------------------------------------------------------------------- 201 (453)
Q Consensus 202 -------------------------------------------------------------------------------- 201 (453)
T Consensus 278 ~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~Qn 357 (764)
T PRK12326 278 EEHVGTTLTQVNVALHAHALLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQA 357 (764)
T ss_pred cchhHHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHH
Confidence
Q ss_pred ---CCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccccccceEEEEEEcchhhHHHHHHHHHh-hCCCCcEEEEec
Q psy9399 202 ---VTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLR-DKRVGQAVVFTA 277 (453)
Q Consensus 202 ---~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~lvf~~ 277 (453)
....+.+||+|.......+.+.+..+ ........+........ .+..........++..+.. +..+.|+||.|.
T Consensus 358 fFr~Y~kLsGMTGTa~t~~~Ef~~iY~l~-Vv~IPtnkp~~R~d~~d-~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~ 435 (764)
T PRK12326 358 LIGRYPTVCGMTGTAVAAGEQLRQFYDLG-VSVIPPNKPNIREDEAD-RVYATAAEKNDAIVEHIAEVHETGQPVLVGTH 435 (764)
T ss_pred HHHhcchheeecCCChhHHHHHHHHhCCc-EEECCCCCCceeecCCC-ceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 01157777888765555555444333 22111111111111111 1122222333344555444 356789999999
Q ss_pred cchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCC---------------CcEEE
Q psy9399 278 TKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPA---------------ITHVF 342 (453)
Q Consensus 278 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~---------------~~~Vi 342 (453)
+.+..+.+++.|.+.+++...+++.-...+-..+-+.=+. -.|.|||+++++|.||.- -=+||
T Consensus 436 sI~~SE~ls~~L~~~gI~h~vLNAk~~~~EA~IIa~AG~~--gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVI 513 (764)
T PRK12326 436 DVAESEELAERLRAAGVPAVVLNAKNDAEEARIIAEAGKY--GAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVI 513 (764)
T ss_pred CHHHHHHHHHHHHhCCCcceeeccCchHhHHHHHHhcCCC--CcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEE
Confidence 9999999999999999999999988555443333333222 359999999999999862 12688
Q ss_pred EcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHH
Q psy9399 343 NYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERM 379 (453)
Q Consensus 343 ~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 379 (453)
....+.|..--.|..||+||.|++|.+..+++-.|.-
T Consensus 514 gTerheSrRID~QLrGRaGRQGDpGss~f~lSleDdl 550 (764)
T PRK12326 514 GTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLEDDV 550 (764)
T ss_pred eccCCchHHHHHHHhcccccCCCCCceeEEEEcchhH
Confidence 8888889888999999999999999999999887763
No 118
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.87 E-value=5.8e-20 Score=193.82 Aligned_cols=117 Identities=17% Similarity=0.135 Sum_probs=87.0
Q ss_pred CCCcEEEEeccchhHHHHHHHHhhCCC--ceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCC--CcEEEE
Q psy9399 268 RVGQAVVFTATKRDADIIADRLNISGF--LAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPA--ITHVFN 343 (453)
Q Consensus 268 ~~~~~lvf~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~--~~~Vi~ 343 (453)
.++++||+++|.+..+.+++.|..... ...++.-++....|.++++.|++++-.||++|+.+++|||+|+ +.+||+
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 457999999999999999999975322 1222222333345789999999998899999999999999996 577888
Q ss_pred cCCCCC------------------------------hhHHHHHhhhccCCCCCccEEEEeChh--hHHHHHHH
Q psy9399 344 YDLPKF------------------------------PEDYVHRIGRTGRAGRNGFAVSLVNHA--ERMNIKKI 384 (453)
Q Consensus 344 ~~~~~~------------------------------~~~~~Q~~GR~~R~g~~g~~~~~~~~~--~~~~~~~~ 384 (453)
...|.. ...+.|.+||+.|...+..++++++.+ ...+.+.+
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~ 903 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYF 903 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHH
Confidence 887752 112459999999998886677777776 34444443
No 119
>KOG0920|consensus
Probab=99.87 E-value=1.8e-20 Score=188.93 Aligned_cols=315 Identities=19% Similarity=0.250 Sum_probs=218.5
Q ss_pred CcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEE
Q psy9399 24 PTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVL 103 (453)
Q Consensus 24 ~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 103 (453)
.+..+.+.++++.+...++|+|.||+|||.-.-..+++...... ...++++-
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~----------------------------~~~~IicT 225 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG----------------------------AACNIICT 225 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC----------------------------CCCeEEec
Confidence 56788889999999899999999999999887777887766532 45678999
Q ss_pred cCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEechhh
Q psy9399 104 TPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADR 183 (453)
Q Consensus 104 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h~ 183 (453)
-|+|--|..+++++..--....+-.++....... .......+++||.+.|++.+.... .+..+..||+||+|.
T Consensus 226 QPRRIsAIsvAeRVa~ER~~~~g~~VGYqvrl~~------~~s~~t~L~fcTtGvLLr~L~~~~-~l~~vthiivDEVHE 298 (924)
T KOG0920|consen 226 QPRRISAISVAERVAKERGESLGEEVGYQVRLES------KRSRETRLLFCTTGVLLRRLQSDP-TLSGVTHIIVDEVHE 298 (924)
T ss_pred CCchHHHHHHHHHHHHHhccccCCeeeEEEeeec------ccCCceeEEEecHHHHHHHhccCc-ccccCceeeeeeEEE
Confidence 9998888888877654222111122222222111 112246799999999999988743 688999999999995
Q ss_pred hc-ccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEeccc--ccc--------------cccceEE
Q psy9399 184 ML-DMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI--EKK--------------QKNITQS 246 (453)
Q Consensus 184 ~~-~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~--------------~~~~~~~ 246 (453)
=. +.+|.-.+...+-..+.+.++|+||||+.. +. ...+++....+.+... +.. .....+.
T Consensus 299 R~i~~DflLi~lk~lL~~~p~LkvILMSAT~da--e~-fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~ 375 (924)
T KOG0920|consen 299 RSINTDFLLILLKDLLPRNPDLKVILMSATLDA--EL-FSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSAR 375 (924)
T ss_pred ccCCcccHHHHHHHHhhhCCCceEEEeeeecch--HH-HHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccc
Confidence 33 444555555555555678899999999873 22 3333333333332210 000 0000000
Q ss_pred ------------EEEEc---chhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhC-------CCceeecCCCCC
Q psy9399 247 ------------ILFVD---DILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNIS-------GFLAAPLHGDLH 304 (453)
Q Consensus 247 ------------~~~~~---~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~-------~~~~~~~~~~~~ 304 (453)
..... +......++..+......+.+|||.+.......+.+.|... .+-+..+|+.|+
T Consensus 376 ~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~ 455 (924)
T KOG0920|consen 376 SGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIP 455 (924)
T ss_pred cccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCC
Confidence 00000 01112233344444556789999999999999999999642 255788999999
Q ss_pred HHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCC--------C----------ChhHHHHHhhhccCCCCC
Q psy9399 305 QNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLP--------K----------FPEDYVHRIGRTGRAGRN 366 (453)
Q Consensus 305 ~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~--------~----------~~~~~~Q~~GR~~R~g~~ 366 (453)
..++..+...-..|..+|+++|.+++.+|-|+++-+||+.+.. . +...-.||.|||||- .+
T Consensus 456 s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~ 534 (924)
T KOG0920|consen 456 SEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RP 534 (924)
T ss_pred hHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cC
Confidence 9999999999999999999999999999999999999975432 2 344567999999998 88
Q ss_pred ccEEEEeChhh
Q psy9399 367 GFAVSLVNHAE 377 (453)
Q Consensus 367 g~~~~~~~~~~ 377 (453)
|.||.+++...
T Consensus 535 G~cy~L~~~~~ 545 (924)
T KOG0920|consen 535 GICYHLYTRSR 545 (924)
T ss_pred CeeEEeechhh
Confidence 99999988654
No 120
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=2.5e-20 Score=188.02 Aligned_cols=124 Identities=19% Similarity=0.227 Sum_probs=106.8
Q ss_pred hhHHHHHHHHHh--hCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCccc
Q psy9399 254 LHKNRLLDYLLR--DKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAAR 331 (453)
Q Consensus 254 ~~~~~~~~~l~~--~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~ 331 (453)
..+...+...+. ...+.++||||+|++.++.+++.|...++++..+|+ .+.+|+..+..|..+...|+|||+++++
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGR 658 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGR 658 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCC
Confidence 344444444442 346789999999999999999999999999999997 4778999999999999999999999999
Q ss_pred CCCCC---CCc-----EEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHH
Q psy9399 332 GIDVP---AIT-----HVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERM 379 (453)
Q Consensus 332 Gvdi~---~~~-----~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 379 (453)
|+||+ .|. +||....|.+...|.|++||+||.|.+|.+++|++..|.-
T Consensus 659 GtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 659 GTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred CCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHH
Confidence 99998 443 3588889999999999999999999999999999987753
No 121
>COG4889 Predicted helicase [General function prediction only]
Probab=99.87 E-value=1.1e-21 Score=191.00 Aligned_cols=326 Identities=18% Similarity=0.188 Sum_probs=195.3
Q ss_pred CCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcC----CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhcc
Q psy9399 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISG----RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNL 77 (453)
Q Consensus 2 ~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~----~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~ 77 (453)
.|+.... .++..++.-..-..||++|+.|+.+.+++ ...-+.+.+|+|||++.|-.......
T Consensus 141 DW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~------------- 206 (1518)
T COG4889 141 DWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA------------- 206 (1518)
T ss_pred ChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh-------------
Confidence 3444432 34555666666678999999999998865 23677788999999987655444322
Q ss_pred ccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHH-----------------
Q psy9399 78 NQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLR----------------- 140 (453)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 140 (453)
.++|+++|+++|..|..++...-.. -++....++.+.....
T Consensus 207 --------------------~~iL~LvPSIsLLsQTlrew~~~~~--l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~ 264 (1518)
T COG4889 207 --------------------ARILFLVPSISLLSQTLREWTAQKE--LDFRASAVCSDDKVSRSAEDIKASDLPIPVSTD 264 (1518)
T ss_pred --------------------hheEeecchHHHHHHHHHHHhhccC--ccceeEEEecCccccccccccccccCCCCCccc
Confidence 3899999999999998776654321 1244444444332211
Q ss_pred ------HHHH--hcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCC-----CCccEE
Q psy9399 141 ------QMQL--LSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATP-----VTRQTM 207 (453)
Q Consensus 141 ------~~~~--~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~-----~~~~~i 207 (453)
.+.. ...+--|+++|++.+...-.....-+..+++||+||||+.....+...-..-+..+. +..+.+
T Consensus 265 ~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRl 344 (1518)
T COG4889 265 LEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRL 344 (1518)
T ss_pred HHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhh
Confidence 1111 122446999999999887766666788999999999998653221110000011111 123568
Q ss_pred EEEeecCh---HHHH------------------------------HHHhhcCCCeEEEecccccccccceEEEEEEcchh
Q psy9399 208 LFSATLDG---IVGN------------------------------MAENITKDPLILKVNSIEKKQKNITQSILFVDDIL 254 (453)
Q Consensus 208 ~~SAT~~~---~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (453)
+|||||.- +... ....++.+..++.....+.......+.........
T Consensus 345 YmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~ 424 (1518)
T COG4889 345 YMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKG 424 (1518)
T ss_pred hcccCchhhchhhhhhhhhccceeeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccc
Confidence 99999831 1110 11111122222211111111111111111111100
Q ss_pred hHHHH-------HHHHHhhCC--------------CCcEEEEeccchhHHHHHHHHhh-------------CC--Cceee
Q psy9399 255 HKNRL-------LDYLLRDKR--------------VGQAVVFTATKRDADIIADRLNI-------------SG--FLAAP 298 (453)
Q Consensus 255 ~~~~~-------~~~l~~~~~--------------~~~~lvf~~~~~~~~~l~~~L~~-------------~~--~~~~~ 298 (453)
...+- -..+.+.+. -++.+-||.+.++...+++.+.. .+ +.+..
T Consensus 425 L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~H 504 (1518)
T COG4889 425 LALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDH 504 (1518)
T ss_pred cchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeec
Confidence 01111 111222111 13668899888877766665531 22 34566
Q ss_pred cCCCCCHHHHHHHHH---HHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCC
Q psy9399 299 LHGDLHQNARNRTLE---NLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRA 363 (453)
Q Consensus 299 ~~~~~~~~~r~~~~~---~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~ 363 (453)
+.|.|...+|...+. .|...+.+||--..++++|||+|.++.||++++-.+..+.+|.+||++|.
T Consensus 505 vDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRK 572 (1518)
T COG4889 505 VDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRK 572 (1518)
T ss_pred ccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHh
Confidence 788899999865554 34567788888889999999999999999999999999999999999997
No 122
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.86 E-value=3e-19 Score=177.10 Aligned_cols=121 Identities=15% Similarity=0.127 Sum_probs=87.0
Q ss_pred HHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhc----CCccEEEEeCCcccCCCC-
Q psy9399 261 DYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRR----GRIKILVATDVAARGIDV- 335 (453)
Q Consensus 261 ~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~----g~~~vLv~T~~~~~Gvdi- 335 (453)
..++... +++++|.+.|...++.+++.|...--...++.|..+ .+...+++|++ |+..||++|+.+++|||+
T Consensus 463 ~~~~~~~-~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~ 539 (636)
T TIGR03117 463 AAILRKA-QGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLT 539 (636)
T ss_pred HHHHHHc-CCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccC
Confidence 3344433 469999999999999999999764323455666543 25678888887 478999999999999999
Q ss_pred -------C--CCcEEEEcCCCCCh-------------------------hHHHHHhhhccCCCCC--ccEEEEeChh-hH
Q psy9399 336 -------P--AITHVFNYDLPKFP-------------------------EDYVHRIGRTGRAGRN--GFAVSLVNHA-ER 378 (453)
Q Consensus 336 -------~--~~~~Vi~~~~~~~~-------------------------~~~~Q~~GR~~R~g~~--g~~~~~~~~~-~~ 378 (453)
| .+++||+..+|+.+ ..+.|.+||..|...+ ..++.+++++ ..
T Consensus 540 ~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R~~~ 619 (636)
T TIGR03117 540 HKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGRIHW 619 (636)
T ss_pred CccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCCCCc
Confidence 3 37889998877432 1356999999999776 5566666665 23
Q ss_pred HHHHHH
Q psy9399 379 MNIKKI 384 (453)
Q Consensus 379 ~~~~~~ 384 (453)
.+.+.+
T Consensus 620 ~yg~~~ 625 (636)
T TIGR03117 620 PYMESW 625 (636)
T ss_pred hhHHHH
Confidence 344443
No 123
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.86 E-value=4.7e-19 Score=179.98 Aligned_cols=134 Identities=25% Similarity=0.363 Sum_probs=114.4
Q ss_pred HHHHHHHhh-CCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCC
Q psy9399 258 RLLDYLLRD-KRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVP 336 (453)
Q Consensus 258 ~~~~~l~~~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~ 336 (453)
.++..+... ..+.+++|||++++.++.+++.|...|+++..+||+++..+|..+++.|++|++.|+|||+.+++|+|+|
T Consensus 434 ~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp 513 (652)
T PRK05298 434 DLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIP 513 (652)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCcccc
Confidence 444444433 3567899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEcCC-----CCChhHHHHHhhhccCCCCCccEEEEeChh---------hHHHHHHHHHHhhcCC
Q psy9399 337 AITHVFNYDL-----PKFPEDYVHRIGRTGRAGRNGFAVSLVNHA---------ERMNIKKIERFTKQQI 392 (453)
Q Consensus 337 ~~~~Vi~~~~-----~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~---------~~~~~~~~~~~~~~~~ 392 (453)
++++||+++. |.+..+|+||+||+||. ..|.++++++.. +....+.++..++...
T Consensus 514 ~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 582 (652)
T PRK05298 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEH 582 (652)
T ss_pred CCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999885 67899999999999996 789999999853 4444555565665553
No 124
>KOG0387|consensus
Probab=99.86 E-value=1e-19 Score=176.44 Aligned_cols=317 Identities=16% Similarity=0.156 Sum_probs=208.8
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCc
Q psy9399 23 KPTGVQEQAIPAAI----SGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP 98 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~----~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
.+.++|++.+..+. ++...++.-.+|-|||.-.+..+.......+ -..
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k----------------------------~~~ 256 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGK----------------------------LTK 256 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhccc----------------------------ccC
Confidence 46899999988876 3456999999999999754333333222211 124
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCch--------HHHHHH-----hcCCCCEEEeChHHHHHHHhc
Q psy9399 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPY--------LRQMQL-----LSRNPEILLATPGRLIDHMNS 165 (453)
Q Consensus 99 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-----~~~~~~Ilv~T~~~l~~~l~~ 165 (453)
++|||||. .++.||..++..|.. .+++..+++.... ...... ......|+|+|++.+.-. .
T Consensus 257 paLIVCP~-Tii~qW~~E~~~w~p---~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~ 330 (923)
T KOG0387|consen 257 PALIVCPA-TIIHQWMKEFQTWWP---PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--G 330 (923)
T ss_pred ceEEEccH-HHHHHHHHHHHHhCc---ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--C
Confidence 89999998 677999999998873 5778787776552 111111 112447999999877432 2
Q ss_pred CCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecCh-HH---------------------------
Q psy9399 166 GKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDG-IV--------------------------- 217 (453)
Q Consensus 166 ~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~-~~--------------------------- 217 (453)
..+.-..++++|+||.|.+-+..- .+...+..++ ..+.|.+|+||-. .+
T Consensus 331 d~l~~~~W~y~ILDEGH~IrNpns--~islackki~-T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~ 407 (923)
T KOG0387|consen 331 DDLLGILWDYVILDEGHRIRNPNS--KISLACKKIR-TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEH 407 (923)
T ss_pred cccccccccEEEecCcccccCCcc--HHHHHHHhcc-ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhh
Confidence 222345689999999999877642 2222222322 2345667777610 00
Q ss_pred ----------------------------------HH--------------------------------------HHHhhc
Q psy9399 218 ----------------------------------GN--------------------------------------MAENIT 225 (453)
Q Consensus 218 ----------------------------------~~--------------------------------------~~~~~~ 225 (453)
.. +...+.
T Consensus 408 pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~n 487 (923)
T KOG0387|consen 408 PINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILN 487 (923)
T ss_pred heeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHc
Confidence 00 000000
Q ss_pred CCCeEEEeccc---ccccc-cceE--------EEE-EEcchhhHHHHHHHHHhh--CCCCcEEEEeccchhHHHHHHHHh
Q psy9399 226 KDPLILKVNSI---EKKQK-NITQ--------SIL-FVDDILHKNRLLDYLLRD--KRVGQAVVFTATKRDADIIADRLN 290 (453)
Q Consensus 226 ~~~~~~~~~~~---~~~~~-~~~~--------~~~-~~~~~~~~~~~~~~l~~~--~~~~~~lvf~~~~~~~~~l~~~L~ 290 (453)
+++..+..... -.+.+ .... ... -.....-+..++..++.. ..+.++|+|..++.....+...|.
T Consensus 488 g~~~~l~Gi~iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~ 567 (923)
T KOG0387|consen 488 GKRNCLSGIDILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLR 567 (923)
T ss_pred CCccceechHHHHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHH
Confidence 01100000000 00000 0000 000 111223456677776664 566799999999999999999999
Q ss_pred -hCCCceeecCCCCCHHHHHHHHHHHhcCCcc--EEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCc
Q psy9399 291 -ISGFLAAPLHGDLHQNARNRTLENLRRGRIK--ILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNG 367 (453)
Q Consensus 291 -~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~--vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g 367 (453)
..++.++.+.|..+...|..+++.|.+++.- .|++|.+.+-|+|+.+++.||+||+.|++..=.|..-||-|.|+..
T Consensus 568 ~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkk 647 (923)
T KOG0387|consen 568 RAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKK 647 (923)
T ss_pred hcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCcc
Confidence 6899999999999999999999999988643 5788899999999999999999999999999999999999999886
Q ss_pred cEE--EEeChh
Q psy9399 368 FAV--SLVNHA 376 (453)
Q Consensus 368 ~~~--~~~~~~ 376 (453)
.|+ .+++..
T Consensus 648 dV~VYRL~t~g 658 (923)
T KOG0387|consen 648 DVVVYRLMTAG 658 (923)
T ss_pred ceEEEEEecCC
Confidence 554 445543
No 125
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.86 E-value=1e-20 Score=189.97 Aligned_cols=309 Identities=11% Similarity=0.058 Sum_probs=194.2
Q ss_pred EEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy9399 42 IVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121 (453)
Q Consensus 42 lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 121 (453)
+..+.+|||||.+|+-.+...+.. +.++||++|.+.|+.|+.+.++..+
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~-------------------------------Gk~vLvLvPEi~lt~q~~~rl~~~f 212 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRA-------------------------------GRGALVVVPDQRDVDRLEAALRALL 212 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHc-------------------------------CCeEEEEecchhhHHHHHHHHHHHc
Confidence 444456999999999998887765 5589999999999999999998866
Q ss_pred cccCCeeEEEEECCCchHH----HHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEechhhhcccC-----ChHH
Q psy9399 122 LYMKKIKAISILGGMPYLR----QMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMG-----FIND 192 (453)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h~~~~~~-----~~~~ 192 (453)
. ...++.++++....+ +.+...+...|+|+|.+.++- ++.++++||+||.|.-+..+ |...
T Consensus 213 ~---~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvFa-------P~~~LgLIIvdEEhd~sykq~~~p~yhaR 282 (665)
T PRK14873 213 G---AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVFA-------PVEDLGLVAIWDDGDDLLAEPRAPYPHAR 282 (665)
T ss_pred C---CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEEe-------ccCCCCEEEEEcCCchhhcCCCCCCccHH
Confidence 3 134666777665543 334445568999999988866 89999999999999655332 2333
Q ss_pred HHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecc--cccccccceEEEEEEcc------h-h----hHHHH
Q psy9399 193 IEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNS--IEKKQKNITQSILFVDD------I-L----HKNRL 259 (453)
Q Consensus 193 ~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~-~----~~~~~ 259 (453)
-.++..+...+..+|+.|||++-........ +....+.... .....+.+ .+..... . . -...+
T Consensus 283 dvA~~Ra~~~~~~lvLgSaTPSles~~~~~~--g~~~~~~~~~~~~~~~~P~v--~~vd~~~~~~~~~~~~~g~~ls~~l 358 (665)
T PRK14873 283 EVALLRAHQHGCALLIGGHARTAEAQALVES--GWAHDLVAPRPVVRARAPRV--RALGDSGLALERDPAARAARLPSLA 358 (665)
T ss_pred HHHHHHHHHcCCcEEEECCCCCHHHHHHHhc--CcceeeccccccccCCCCeE--EEEeCchhhhccccccccCccCHHH
Confidence 3344455556778999999987544433322 2111111111 11111111 1111100 0 0 11234
Q ss_pred HHHHHhhCCCCcEEEEeccchh----------------------------------------------------------
Q psy9399 260 LDYLLRDKRVGQAVVFTATKRD---------------------------------------------------------- 281 (453)
Q Consensus 260 ~~~l~~~~~~~~~lvf~~~~~~---------------------------------------------------------- 281 (453)
+..+.+....+++|||.|++..
T Consensus 359 ~~~i~~~L~~gqvll~lnRrGyap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~ 438 (665)
T PRK14873 359 FRAARDALEHGPVLVQVPRRGYVPSLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVV 438 (665)
T ss_pred HHHHHHHHhcCcEEEEecCCCCCCeeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeec
Confidence 4444444333499999999832
Q ss_pred -HHHHHHHHhhC--CCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCC----------
Q psy9399 282 -ADIIADRLNIS--GFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPK---------- 348 (453)
Q Consensus 282 -~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~---------- 348 (453)
++++.+.|.+. +.++..+. +..+++.|. ++.+|||+|+.++.=+. ++++.|+..|...
T Consensus 439 Gter~eeeL~~~FP~~~V~r~d-------~d~~l~~~~-~~~~IlVGTqgaepm~~-g~~~lV~ildaD~~L~~pDfRA~ 509 (665)
T PRK14873 439 GARRTAEELGRAFPGVPVVTSG-------GDQVVDTVD-AGPALVVATPGAEPRVE-GGYGAALLLDAWALLGRQDLRAA 509 (665)
T ss_pred cHHHHHHHHHHHCCCCCEEEEC-------hHHHHHhhc-cCCCEEEECCCCccccc-CCceEEEEEcchhhhcCCCcChH
Confidence 33444444331 23333322 235788886 59999999993222222 3567766655431
Q ss_pred --ChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHH-----HHHHhhcCCCccccCCCCcchh
Q psy9399 349 --FPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKK-----IERFTKQQIPIEVINGFEPKKR 405 (453)
Q Consensus 349 --~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 405 (453)
....+.|.+||+||..+.|.++++. .++...++. ...|+..++..+...+|||..+
T Consensus 510 Er~~qll~qvagragr~~~~G~V~iq~-~p~~~~~~~l~~~d~~~F~~~EL~~R~~~~~PPf~~ 572 (665)
T PRK14873 510 EDTLRRWMAAAALVRPRADGGQVVVVA-ESSLPTVQALIRWDPVGHAERELAERAEVGFPPAVR 572 (665)
T ss_pred HHHHHHHHHHHHhhcCCCCCCEEEEEe-CCCCHHHHHHHhCCHHHHHHHHHHHHHHcCccCcee
Confidence 2344679999999998999999986 555555543 3568889999998889999543
No 126
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.86 E-value=9.6e-20 Score=159.77 Aligned_cols=187 Identities=38% Similarity=0.604 Sum_probs=148.9
Q ss_pred hCCCCCCcHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCC
Q psy9399 18 KVGYTKPTGVQEQAIPAAISG-RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPA 96 (453)
Q Consensus 18 ~~~~~~~~~~Q~~~~~~~~~~-~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (453)
.+++..++++|.++++.+... +.+++.+|||+|||.++..++...+....
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~----------------------------- 53 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK----------------------------- 53 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC-----------------------------
Confidence 456778999999999999988 89999999999999988888888766521
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCC-CEEEeChHHHHHHHhcCCCCCCCccE
Q psy9399 97 QPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNP-EILLATPGRLIDHMNSGKINFSHLQI 175 (453)
Q Consensus 97 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Ilv~T~~~l~~~l~~~~~~~~~~~~ 175 (453)
..++++++|+..++.|+.+.+..+..... .......++......+.....+. +++++|++.+.+.+.........+++
T Consensus 54 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~ 132 (201)
T smart00487 54 GKRVLVLVPTRELAEQWAEELKKLGPSLG-LKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDL 132 (201)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHHhccCC-eEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCE
Confidence 34899999999999999999988765432 23334444444344444444444 99999999999988887666788999
Q ss_pred EEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEec
Q psy9399 176 LVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVN 234 (453)
Q Consensus 176 iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 234 (453)
+|+||+|++....+...+..++..++...+++++|||+++........+......+...
T Consensus 133 iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 133 VILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred EEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 99999999987667888888888887888999999999988888777777766555544
No 127
>KOG0923|consensus
Probab=99.85 E-value=3.7e-20 Score=175.81 Aligned_cols=308 Identities=18% Similarity=0.235 Sum_probs=202.6
Q ss_pred CcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEE
Q psy9399 24 PTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVL 103 (453)
Q Consensus 24 ~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 103 (453)
.+++-.+.+.++..+.-++|.|.||||||.-.--.+.+.-. ...+.++-+-
T Consensus 266 Vy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGy-----------------------------tk~gk~IgcT 316 (902)
T KOG0923|consen 266 VYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGY-----------------------------TKGGKKIGCT 316 (902)
T ss_pred chhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhccc-----------------------------ccCCceEeec
Confidence 46677788999998889999999999999743222222111 2234458888
Q ss_pred cCcHHHHHHHHHHHH-HHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEechh
Q psy9399 104 TPTRELALQVTAATE-RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182 (453)
Q Consensus 104 ~P~~~L~~q~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h 182 (453)
-|.|.-+..++.++. +.+...+ -.++.-. ...+......-|-++|.++|++.+...+ .+..+++||+||||
T Consensus 317 QPRRVAAmSVAaRVA~EMgvkLG-~eVGYsI------RFEdcTSekTvlKYMTDGmLlREfL~ep-dLasYSViiiDEAH 388 (902)
T KOG0923|consen 317 QPRRVAAMSVAARVAEEMGVKLG-HEVGYSI------RFEDCTSEKTVLKYMTDGMLLREFLSEP-DLASYSVIIVDEAH 388 (902)
T ss_pred CcchHHHHHHHHHHHHHhCcccc-cccceEE------EeccccCcceeeeeecchhHHHHHhccc-cccceeEEEeehhh
Confidence 899998888766544 3332221 1111100 0011112345678999999999877666 58899999999999
Q ss_pred hh-cccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccccccceEEEEEEcchhhHHHHHH
Q psy9399 183 RM-LDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLD 261 (453)
Q Consensus 183 ~~-~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (453)
.= +..+..-.+..-+..++....++..|||+.. +.+. .++.+..++.+.... ..+...+...+........+.
T Consensus 389 ERTL~TDILfgLvKDIar~RpdLKllIsSAT~DA--ekFS-~fFDdapIF~iPGRR---yPVdi~Yt~~PEAdYldAai~ 462 (902)
T KOG0923|consen 389 ERTLHTDILFGLVKDIARFRPDLKLLISSATMDA--EKFS-AFFDDAPIFRIPGRR---YPVDIFYTKAPEADYLDAAIV 462 (902)
T ss_pred hhhhhhhHHHHHHHHHHhhCCcceEEeeccccCH--HHHH-HhccCCcEEeccCcc---cceeeecccCCchhHHHHHHh
Confidence 42 2222111111222334566789999999863 3333 344444433333211 223223333322222233333
Q ss_pred HHHh---hCCCCcEEEEeccchhHHHHHHHHhh---------CCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCc
Q psy9399 262 YLLR---DKRVGQAVVFTATKRDADIIADRLNI---------SGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVA 329 (453)
Q Consensus 262 ~l~~---~~~~~~~lvf~~~~~~~~~l~~~L~~---------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~ 329 (453)
.+++ ....+-+|||....+..+.+.+.|.. ..+-++.+|+.++.+.+.++++--.+|..+|++||+++
T Consensus 463 tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIA 542 (902)
T KOG0923|consen 463 TVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIA 542 (902)
T ss_pred hheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecch
Confidence 3333 34557899999999988887777754 13457889999999999999999999999999999999
Q ss_pred ccCCCCCCCcEEEEcCCC------------------CChhHHHHHhhhccCCCCCccEEEEeCh
Q psy9399 330 ARGIDVPAITHVFNYDLP------------------KFPEDYVHRIGRTGRAGRNGFAVSLVNH 375 (453)
Q Consensus 330 ~~Gvdi~~~~~Vi~~~~~------------------~~~~~~~Q~~GR~~R~g~~g~~~~~~~~ 375 (453)
+..+.|+++..||+-++. -|-.+-.||+|||||. .+|.|+.+++.
T Consensus 543 ETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRt-gPGKCfRLYt~ 605 (902)
T KOG0923|consen 543 ETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRT-GPGKCFRLYTA 605 (902)
T ss_pred hhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCC-CCCceEEeech
Confidence 999999999999975543 2455677999999998 56889988874
No 128
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=3.3e-19 Score=179.41 Aligned_cols=318 Identities=17% Similarity=0.152 Sum_probs=211.3
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCc
Q psy9399 19 VGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP 98 (453)
Q Consensus 19 ~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
+|. .++++|--.--.+ .+.-+..+.||+|||+++.+|++..... +.
T Consensus 79 lGm-~~ydVQliGg~~L--h~G~iaEM~TGEGKTLvA~l~a~l~al~-------------------------------G~ 124 (913)
T PRK13103 79 MGM-RHFDVQLIGGMTL--HEGKIAEMRTGEGKTLVGTLAVYLNALS-------------------------------GK 124 (913)
T ss_pred hCC-CcchhHHHhhhHh--ccCccccccCCCCChHHHHHHHHHHHHc-------------------------------CC
Confidence 576 5778776544334 3457899999999999999998876555 56
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHH-HHHHhcCCC------CCC
Q psy9399 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRL-IDHMNSGKI------NFS 171 (453)
Q Consensus 99 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~~~------~~~ 171 (453)
.+.+++|+.-|+.+-++++..+....+ +.+..+.++....+....+ .++|+++|...| +++|+.+-. ..+
T Consensus 125 ~VhvvT~ndyLA~RD~e~m~~l~~~lG-l~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr 201 (913)
T PRK13103 125 GVHVVTVNDYLARRDANWMRPLYEFLG-LSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQR 201 (913)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhcccC-CEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhccc
Confidence 899999999999999999999887776 8998888877655544444 389999999887 555554321 137
Q ss_pred CccEEEEechhhhc-ccC---------------ChHHHHHHHhhCC----------------------------------
Q psy9399 172 HLQILVLDEADRML-DMG---------------FINDIEKIVDATP---------------------------------- 201 (453)
Q Consensus 172 ~~~~iIiDE~h~~~-~~~---------------~~~~~~~~~~~~~---------------------------------- 201 (453)
.++++|+||+|.++ |.. .+..+..+...+.
T Consensus 202 ~l~~aIVDEvDsiLIDEArtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~ 281 (913)
T PRK13103 202 ELNFAVIDEVDSILIDEARTPLIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQF 281 (913)
T ss_pred ccceeEechhhheeccccCCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHH
Confidence 78999999999754 110 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q psy9399 202 -------------------------------------------------------------------------------- 201 (453)
Q Consensus 202 -------------------------------------------------------------------------------- 201 (453)
T Consensus 282 ~e~~~~~~~i~~~~~~ly~~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE 361 (913)
T PRK13103 282 IEEMLTQAGLLAEGESLYSAHNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKE 361 (913)
T ss_pred HHHHhhhCCCcccchhccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHc
Confidence
Q ss_pred ---------------------CCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccccccceEEEEEEcchhhHHHHH
Q psy9399 202 ---------------------VTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLL 260 (453)
Q Consensus 202 ---------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (453)
....+-+||+|.......+...+..+-..+.. ..+......... +..........++
T Consensus 362 ~v~I~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPT-nkP~~R~D~~d~-vy~t~~eK~~Ai~ 439 (913)
T PRK13103 362 NLNIQAESQTLASTTFQNYFRLYNKLSGMTGTADTEAFEFRQIYGLDVVVIPP-NKPLARKDFNDL-VYLTAEEKYAAII 439 (913)
T ss_pred CCCcCCCceeEEeehHHHHHHhcchhccCCCCCHHHHHHHHHHhCCCEEECCC-CCCcccccCCCe-EEcCHHHHHHHHH
Confidence 00135555555544333333333222211111 111111111111 2222223334455
Q ss_pred HHHHh-hCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcC-CccEEEEeCCcccCCCCC--
Q psy9399 261 DYLLR-DKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRG-RIKILVATDVAARGIDVP-- 336 (453)
Q Consensus 261 ~~l~~-~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vLv~T~~~~~Gvdi~-- 336 (453)
..+.. +..+.|+||-+.|++..+.+++.|...+++..++++.....+-..+-+ .| .-.|.|||+++++|.||.
T Consensus 440 ~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa~---AG~~GaVTIATNMAGRGTDIkLg 516 (913)
T PRK13103 440 TDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQ---AGRPGALTIATNMAGRGTDILLG 516 (913)
T ss_pred HHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccchhHHHHHHc---CCCCCcEEEeccCCCCCCCEecC
Confidence 55544 356789999999999999999999999999888888755444444433 34 345999999999999994
Q ss_pred -----------------------------------CCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhH
Q psy9399 337 -----------------------------------AITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAER 378 (453)
Q Consensus 337 -----------------------------------~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 378 (453)
+-=+||-...+.|..--.|..||+||.|.+|.+-.+++-.|.
T Consensus 517 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 517 GNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred CchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 112688888888888888999999999999999988887665
No 129
>KOG0924|consensus
Probab=99.83 E-value=5.4e-19 Score=168.45 Aligned_cols=308 Identities=17% Similarity=0.211 Sum_probs=197.1
Q ss_pred CcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEE
Q psy9399 24 PTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVL 103 (453)
Q Consensus 24 ~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 103 (453)
....+.+.+..+..++-++|.+.||||||....-.+++.-.. ..+-+-+-
T Consensus 357 vf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~------------------------------~~GmIGcT 406 (1042)
T KOG0924|consen 357 VFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYA------------------------------DNGMIGCT 406 (1042)
T ss_pred hHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccc------------------------------cCCeeeec
Confidence 345666777777777779999999999997544333332111 23355666
Q ss_pred cCcHHHHHHHHHHHHH-HhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEechh
Q psy9399 104 TPTRELALQVTAATER-YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182 (453)
Q Consensus 104 ~P~~~L~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h 182 (453)
-|.+.-+..++..+.. ++...+ -.+....- ..+.......|-.+|.+.|++...... .+.++++||+||||
T Consensus 407 QPRRvAAiSVAkrVa~EM~~~lG-~~VGYsIR------FEdvT~~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAH 478 (1042)
T KOG0924|consen 407 QPRRVAAISVAKRVAEEMGVTLG-DTVGYSIR------FEDVTSEDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAH 478 (1042)
T ss_pred CchHHHHHHHHHHHHHHhCCccc-cccceEEE------eeecCCCceeEEEeccchHHHHHhhhh-hhhheeEEEechhh
Confidence 7999988888776654 322111 11111100 001112245688999999877554433 47899999999999
Q ss_pred hhc-ccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccccccceEEEEEEcchhhHHHHHH
Q psy9399 183 RML-DMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLD 261 (453)
Q Consensus 183 ~~~-~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (453)
.=. +.+..--+.....+-+.+.++|.+|||+.. +.+...+...|.+..... ...+...+...+-.......+.
T Consensus 479 ERslNtDilfGllk~~larRrdlKliVtSATm~a--~kf~nfFgn~p~f~IpGR----TyPV~~~~~k~p~eDYVeaavk 552 (1042)
T KOG0924|consen 479 ERSLNTDILFGLLKKVLARRRDLKLIVTSATMDA--QKFSNFFGNCPQFTIPGR----TYPVEIMYTKTPVEDYVEAAVK 552 (1042)
T ss_pred hcccchHHHHHHHHHHHHhhccceEEEeeccccH--HHHHHHhCCCceeeecCC----ccceEEEeccCchHHHHHHHHh
Confidence 532 333222223333344557789999999863 455554444554432211 1112222222211122222233
Q ss_pred HHHh---hCCCCcEEEEeccchhHHHHHHHHhh----------CCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCC
Q psy9399 262 YLLR---DKRVGQAVVFTATKRDADIIADRLNI----------SGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDV 328 (453)
Q Consensus 262 ~l~~---~~~~~~~lvf~~~~~~~~~l~~~L~~----------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~ 328 (453)
..+. ....+-+|||....+..+-.+..++. .+..+..+++.++...+.++++.-..|..+++|+|++
T Consensus 553 q~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNI 632 (1042)
T KOG0924|consen 553 QAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNI 632 (1042)
T ss_pred hheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccc
Confidence 3222 23447799999998876665555542 2577899999999999999998888899999999999
Q ss_pred cccCCCCCCCcEEEEcCC------------------CCChhHHHHHhhhccCCCCCccEEEEeChh
Q psy9399 329 AARGIDVPAITHVFNYDL------------------PKFPEDYVHRIGRTGRAGRNGFAVSLVNHA 376 (453)
Q Consensus 329 ~~~Gvdi~~~~~Vi~~~~------------------~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 376 (453)
++..+.+|++.+||+.+. |.|-+.-.||.|||||. .+|.||.++...
T Consensus 633 AETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt-~pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 633 AETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRT-GPGTCYRLYTED 697 (1042)
T ss_pred hhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCC-CCcceeeehhhh
Confidence 999999999999998553 33556677999999998 579999998774
No 130
>KOG0953|consensus
Probab=99.83 E-value=2.4e-19 Score=167.38 Aligned_cols=270 Identities=19% Similarity=0.164 Sum_probs=178.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATE 118 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 118 (453)
+-++-+|||.||||.-+ ++++.. ..+.+|.-|.+-|+.++++.+.
T Consensus 192 kIi~H~GPTNSGKTy~A----Lqrl~~-------------------------------aksGvycGPLrLLA~EV~~r~n 236 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYRA----LQRLKS-------------------------------AKSGVYCGPLRLLAHEVYDRLN 236 (700)
T ss_pred eEEEEeCCCCCchhHHH----HHHHhh-------------------------------hccceecchHHHHHHHHHHHhh
Confidence 34777999999999754 344443 2367999999999999999998
Q ss_pred HHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHh
Q psy9399 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVD 198 (453)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~ 198 (453)
+.+ +.|..++|.+....... ...+..+-||.++..- -..+++.|+||+++|.+...+..|..-+-
T Consensus 237 a~g-----ipCdL~TGeE~~~~~~~--~~~a~hvScTVEM~sv--------~~~yeVAViDEIQmm~Dp~RGwAWTrALL 301 (700)
T KOG0953|consen 237 ALG-----IPCDLLTGEERRFVLDN--GNPAQHVSCTVEMVSV--------NTPYEVAVIDEIQMMRDPSRGWAWTRALL 301 (700)
T ss_pred hcC-----CCccccccceeeecCCC--CCcccceEEEEEEeec--------CCceEEEEehhHHhhcCcccchHHHHHHH
Confidence 876 66777777655333211 2246778888766522 25689999999999999888777765543
Q ss_pred hCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccccccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEecc
Q psy9399 199 ATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTAT 278 (453)
Q Consensus 199 ~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~ 278 (453)
-+...--.+.--...-+.+..+.+- .++...+ ..+..-.+....+.+..-+..-..|-| |.|.|
T Consensus 302 Gl~AdEiHLCGepsvldlV~~i~k~-TGd~vev--------------~~YeRl~pL~v~~~~~~sl~nlk~GDC-vV~FS 365 (700)
T KOG0953|consen 302 GLAADEIHLCGEPSVLDLVRKILKM-TGDDVEV--------------REYERLSPLVVEETALGSLSNLKPGDC-VVAFS 365 (700)
T ss_pred hhhhhhhhccCCchHHHHHHHHHhh-cCCeeEE--------------EeecccCcceehhhhhhhhccCCCCCe-EEEee
Confidence 3322111111111111222333221 2222111 111111111111111122233333455 44568
Q ss_pred chhHHHHHHHHhhCCCc-eeecCCCCCHHHHHHHHHHHhc--CCccEEEEeCCcccCCCCCCCcEEEEcCCC--------
Q psy9399 279 KRDADIIADRLNISGFL-AAPLHGDLHQNARNRTLENLRR--GRIKILVATDVAARGIDVPAITHVFNYDLP-------- 347 (453)
Q Consensus 279 ~~~~~~l~~~L~~~~~~-~~~~~~~~~~~~r~~~~~~f~~--g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~-------- 347 (453)
++....+...+.+.+.. +++++|.++++.|..-...|.+ ++.+|||||+++++|+|+ +++.||+++.-
T Consensus 366 kk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~ 444 (700)
T KOG0953|consen 366 KKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETE 444 (700)
T ss_pred hhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccce
Confidence 88888899999888765 9999999999999999999997 899999999999999999 89999988754
Q ss_pred -CChhHHHHHhhhccCCCCC---ccEEEEeCh
Q psy9399 348 -KFPEDYVHRIGRTGRAGRN---GFAVSLVNH 375 (453)
Q Consensus 348 -~~~~~~~Q~~GR~~R~g~~---g~~~~~~~~ 375 (453)
.+..+..|.+|||||.|.. |.+.++..+
T Consensus 445 ~it~sqikQIAGRAGRf~s~~~~G~vTtl~~e 476 (700)
T KOG0953|consen 445 DITVSQIKQIAGRAGRFGSKYPQGEVTTLHSE 476 (700)
T ss_pred eccHHHHHHHhhcccccccCCcCceEEEeeHh
Confidence 3577899999999998644 666666544
No 131
>KOG0926|consensus
Probab=99.82 E-value=4.4e-19 Score=171.75 Aligned_cols=308 Identities=19% Similarity=0.243 Sum_probs=192.6
Q ss_pred HHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHH
Q psy9399 29 EQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRE 108 (453)
Q Consensus 29 ~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~ 108 (453)
++++.+|..+.-++|||.||||||.-.--.+.+.-.... .....+-+=|--|.|.
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~-------------------------~~~~~gmIGITqPRRV 316 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASE-------------------------QSSSPGMIGITQPRRV 316 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCc-------------------------cCCCCCeeeecCchHH
Confidence 356666666666999999999999743222222111100 0122446667789888
Q ss_pred HHHHHHHHHHH-HhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEechhhhc-c
Q psy9399 109 LALQVTAATER-YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRML-D 186 (453)
Q Consensus 109 L~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h~~~-~ 186 (453)
-+.-++++... ++.....+....-+.|.. .....|.++|.+.|++.+.+.. .+.++++||+||||.=+ +
T Consensus 317 AaiamAkRVa~EL~~~~~eVsYqIRfd~ti--------~e~T~IkFMTDGVLLrEi~~Df-lL~kYSvIIlDEAHERSvn 387 (1172)
T KOG0926|consen 317 AAIAMAKRVAFELGVLGSEVSYQIRFDGTI--------GEDTSIKFMTDGVLLREIENDF-LLTKYSVIILDEAHERSVN 387 (1172)
T ss_pred HHHHHHHHHHHHhccCccceeEEEEecccc--------CCCceeEEecchHHHHHHHHhH-hhhhceeEEechhhhccch
Confidence 77777665443 332112233333333322 2356799999999999887765 47899999999999522 1
Q ss_pred c----CChHHHHHHHhhCCC------CccEEEEEeecChHHHHHH---HhhcCCCeEEEecccccccccceEEEEEEcch
Q psy9399 187 M----GFINDIEKIVDATPV------TRQTMLFSATLDGIVGNMA---ENITKDPLILKVNSIEKKQKNITQSILFVDDI 253 (453)
Q Consensus 187 ~----~~~~~~~~~~~~~~~------~~~~i~~SAT~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (453)
. |....+..+...+.+ ...+|.||||+.- .++. ..+-..|..+.+.... ..+...+......
T Consensus 388 TDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLRV--sDFtenk~LFpi~pPlikVdARQ---fPVsIHF~krT~~ 462 (1172)
T KOG0926|consen 388 TDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLRV--SDFTENKRLFPIPPPLIKVDARQ---FPVSIHFNKRTPD 462 (1172)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCceeEEEEeeeEEe--cccccCceecCCCCceeeeeccc---CceEEEeccCCCc
Confidence 1 112222223222222 5579999999852 1221 1122223344433211 1122222222222
Q ss_pred hh---HHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCC---C---------c-----------------------
Q psy9399 254 LH---KNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISG---F---------L----------------------- 295 (453)
Q Consensus 254 ~~---~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~---~---------~----------------------- 295 (453)
.. ...-...+.+..+.|.+|||+....+++.+++.|++.. + +
T Consensus 463 DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~ 542 (1172)
T KOG0926|consen 463 DYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEE 542 (1172)
T ss_pred hHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchh
Confidence 22 22334445556778899999999999999999996430 0 0
Q ss_pred ----------------------------------------------------------------eeecCCCCCHHHHHHH
Q psy9399 296 ----------------------------------------------------------------AAPLHGDLHQNARNRT 311 (453)
Q Consensus 296 ----------------------------------------------------------------~~~~~~~~~~~~r~~~ 311 (453)
|..+++-++.+++.++
T Consensus 543 Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RV 622 (1172)
T KOG0926|consen 543 EDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRV 622 (1172)
T ss_pred cccccchhhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhh
Confidence 5666777788888888
Q ss_pred HHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCC------------------ChhHHHHHhhhccCCCCCccEEEEe
Q psy9399 312 LENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPK------------------FPEDYVHRIGRTGRAGRNGFAVSLV 373 (453)
Q Consensus 312 ~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~------------------~~~~~~Q~~GR~~R~g~~g~~~~~~ 373 (453)
++.-..|..-++|+|++++..+.||++.+||+.+..+ |-++--||+|||||. .+|.||.++
T Consensus 623 F~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRt-gpGHcYRLY 701 (1172)
T KOG0926|consen 623 FDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRT-GPGHCYRLY 701 (1172)
T ss_pred ccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCC-CCCceeehh
Confidence 8888889888999999999999999999999866432 233445999999998 569999998
Q ss_pred Chh
Q psy9399 374 NHA 376 (453)
Q Consensus 374 ~~~ 376 (453)
+..
T Consensus 702 SSA 704 (1172)
T KOG0926|consen 702 SSA 704 (1172)
T ss_pred hhH
Confidence 764
No 132
>KOG0384|consensus
Probab=99.82 E-value=4.9e-19 Score=178.82 Aligned_cols=314 Identities=17% Similarity=0.248 Sum_probs=209.7
Q ss_pred CCCcHHHHHHHHHHh----cCCcEEEEcCCCchHHHH---HHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccC
Q psy9399 22 TKPTGVQEQAIPAAI----SGRDLIVSSQTGSGKTAA---FMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFK 94 (453)
Q Consensus 22 ~~~~~~Q~~~~~~~~----~~~~~lv~a~TGsGKT~~---~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (453)
.++|.||-+.++.++ ++.++++.-.+|-|||.- ||..+.....
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~------------------------------ 418 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQ------------------------------ 418 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhh------------------------------
Confidence 689999999888765 668899999999999954 3333333321
Q ss_pred CCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhc----C-----CCCEEEeChHHHHHHHhc
Q psy9399 95 PAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLS----R-----NPEILLATPGRLIDHMNS 165 (453)
Q Consensus 95 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~Ilv~T~~~l~~~l~~ 165 (453)
-.+..||++|...+ ..|.+++..|. .++++.++|.....+..+.+. . ..++++||++.++.--.
T Consensus 419 -~~gpflvvvplst~-~~W~~ef~~w~----~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~- 491 (1373)
T KOG0384|consen 419 -IHGPFLVVVPLSTI-TAWEREFETWT----DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA- 491 (1373)
T ss_pred -ccCCeEEEeehhhh-HHHHHHHHHHh----hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh-
Confidence 24578999998555 56778888877 488888888766544433321 1 46899999998855322
Q ss_pred CCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecC-hHHHHHHHhh-cCCCeEEE-----------
Q psy9399 166 GKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLD-GIVGNMAENI-TKDPLILK----------- 232 (453)
Q Consensus 166 ~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~-~~~~~~~~~~-~~~~~~~~----------- 232 (453)
.+.--++.++++||||++.+... ..+.. +..+. ....+++|+||- +.+..+.... +..|....
T Consensus 492 -~L~~i~w~~~~vDeahrLkN~~~-~l~~~-l~~f~-~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~ 567 (1373)
T KOG0384|consen 492 -ELSKIPWRYLLVDEAHRLKNDES-KLYES-LNQFK-MNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDE 567 (1373)
T ss_pred -hhccCCcceeeecHHhhcCchHH-HHHHH-HHHhc-ccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcc
Confidence 11123567999999999986541 12222 22222 224688899973 1222211110 00000000
Q ss_pred ---------------------ecccccccccc------------------------------------------------
Q psy9399 233 ---------------------VNSIEKKQKNI------------------------------------------------ 243 (453)
Q Consensus 233 ---------------------~~~~~~~~~~~------------------------------------------------ 243 (453)
....+...+.-
T Consensus 568 ~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkK 647 (1373)
T KOG0384|consen 568 ETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKK 647 (1373)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHH
Confidence 00000000000
Q ss_pred --eEEEEEEcchhh---------HHHHHHHHHhh---------------CCCCcEEEEeccchhHHHHHHHHhhCCCcee
Q psy9399 244 --TQSILFVDDILH---------KNRLLDYLLRD---------------KRVGQAVVFTATKRDADIIADRLNISGFLAA 297 (453)
Q Consensus 244 --~~~~~~~~~~~~---------~~~~~~~l~~~---------------~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~ 297 (453)
.+.+........ ....+..+++. ..+++||||...+...+-++++|...+++..
T Consensus 648 ccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQ 727 (1373)
T KOG0384|consen 648 CCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQ 727 (1373)
T ss_pred hcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcce
Confidence 111111100000 01233333332 4568999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHhcC---CccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCc--cEEEE
Q psy9399 298 PLHGDLHQNARNRTLENLRRG---RIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNG--FAVSL 372 (453)
Q Consensus 298 ~~~~~~~~~~r~~~~~~f~~g---~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g--~~~~~ 372 (453)
.+.|.+..+.|...++.|..- ....|+||.+.+-|||+..++.||+||..|+++.=+|...||+|.|+.. .+|.+
T Consensus 728 RLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRL 807 (1373)
T KOG0384|consen 728 RLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRL 807 (1373)
T ss_pred eccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEE
Confidence 999999999999999999853 4558999999999999999999999999999999999999999999884 46667
Q ss_pred eChh
Q psy9399 373 VNHA 376 (453)
Q Consensus 373 ~~~~ 376 (453)
++..
T Consensus 808 VTk~ 811 (1373)
T KOG0384|consen 808 VTKN 811 (1373)
T ss_pred ecCC
Confidence 7664
No 133
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=1.4e-17 Score=165.96 Aligned_cols=318 Identities=17% Similarity=0.151 Sum_probs=208.1
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCc
Q psy9399 19 VGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP 98 (453)
Q Consensus 19 ~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
+|. .|++.|--.--.+..| -+..+.||-|||+++.+|+.-.... |.
T Consensus 75 lG~-r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~-------------------------------Gk 120 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALT-------------------------------GK 120 (925)
T ss_pred hCC-CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhc-------------------------------CC
Confidence 577 5888887665555444 5799999999999999988765444 55
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHH-HHHHhcCC------CCCC
Q psy9399 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRL-IDHMNSGK------INFS 171 (453)
Q Consensus 99 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~~------~~~~ 171 (453)
.|-|++..--|+..-+++...+..+.+ +.++....+.........+ .+||+.+|...| +++|+.+. ...+
T Consensus 121 gVhVVTvNdYLA~RDae~mg~vy~fLG-LsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR 197 (925)
T PRK12903 121 GVIVSTVNEYLAERDAEEMGKVFNFLG-LSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQR 197 (925)
T ss_pred ceEEEecchhhhhhhHHHHHHHHHHhC-CceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCc
Confidence 788999999999776666666655555 8888777766655544443 589999999876 66665432 1246
Q ss_pred CccEEEEechhhhc-ccC---------------ChHHHHHHHhhCC----------------------------------
Q psy9399 172 HLQILVLDEADRML-DMG---------------FINDIEKIVDATP---------------------------------- 201 (453)
Q Consensus 172 ~~~~iIiDE~h~~~-~~~---------------~~~~~~~~~~~~~---------------------------------- 201 (453)
.+.+.|+||+|.++ |.. .+..+..+...+.
T Consensus 198 ~~~faIVDEVDSILIDEArTPLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~ 277 (925)
T PRK12903 198 GLNFCLIDEVDSILIDEAKTPLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYD 277 (925)
T ss_pred ccceeeeccchheeecccCCcccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccC
Confidence 67899999999754 110 0111111111100
Q ss_pred --------------------------------------------------------------------------------
Q psy9399 202 -------------------------------------------------------------------------------- 201 (453)
Q Consensus 202 -------------------------------------------------------------------------------- 201 (453)
T Consensus 278 ~~n~~l~h~i~~AL~A~~lf~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~Qnf 357 (925)
T PRK12903 278 IENSELVHRIQNALRAHKVMKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNF 357 (925)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHH
Confidence
Q ss_pred --CCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccccccceEEEEEEcchhhHHHHHHHHHhh-CCCCcEEEEecc
Q psy9399 202 --VTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRD-KRVGQAVVFTAT 278 (453)
Q Consensus 202 --~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~lvf~~~ 278 (453)
...++-+||+|....-..+.+.+..+-..+... .+........ .+..........++..+... ..+.|+||.|.|
T Consensus 358 Fr~Y~kLsGMTGTA~te~~Ef~~iY~l~Vv~IPTn-kP~~R~D~~d-~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~S 435 (925)
T PRK12903 358 FRLFKKLSGMTGTAKTEEQEFIDIYNMRVNVVPTN-KPVIRKDEPD-SIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQ 435 (925)
T ss_pred HHhcchhhccCCCCHHHHHHHHHHhCCCEEECCCC-CCeeeeeCCC-cEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 001466666665444444443332222221111 1111111111 12222233334455555543 567899999999
Q ss_pred chhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcC-CccEEEEeCCcccCCCCCCCc--------EEEEcCCCCC
Q psy9399 279 KRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRG-RIKILVATDVAARGIDVPAIT--------HVFNYDLPKF 349 (453)
Q Consensus 279 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vLv~T~~~~~Gvdi~~~~--------~Vi~~~~~~~ 349 (453)
.+..+.++..|.+.|++..++++.-...+-..+- ..| ...|.|||+++++|.||.--. +||....+.|
T Consensus 436 Ie~SE~ls~~L~~~gi~h~vLNAk~~e~EA~IIa---~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheS 512 (925)
T PRK12903 436 VEDSETLHELLLEANIPHTVLNAKQNAREAEIIA---KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAES 512 (925)
T ss_pred HHHHHHHHHHHHHCCCCceeecccchhhHHHHHH---hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCch
Confidence 9999999999999999999999875443333332 345 346999999999999996322 7888888888
Q ss_pred hhHHHHHhhhccCCCCCccEEEEeChhhH
Q psy9399 350 PEDYVHRIGRTGRAGRNGFAVSLVNHAER 378 (453)
Q Consensus 350 ~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 378 (453)
..--.|..||+||.|.+|.+-.+++-.|.
T Consensus 513 rRIDnQLrGRaGRQGDpGss~f~lSLeD~ 541 (925)
T PRK12903 513 RRIDNQLRGRSGRQGDVGESRFFISLDDQ 541 (925)
T ss_pred HHHHHHHhcccccCCCCCcceEEEecchH
Confidence 88888999999999999999888887765
No 134
>KOG0390|consensus
Probab=99.81 E-value=3.2e-17 Score=162.95 Aligned_cols=319 Identities=14% Similarity=0.160 Sum_probs=196.2
Q ss_pred CCcHHHHHHHHHHhcC----------CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcc
Q psy9399 23 KPTGVQEQAIPAAISG----------RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLR 92 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~~~----------~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (453)
.++|+|++.+.-+... ..+++.-.+|+|||+.....+...+......
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~----------------------- 294 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQA----------------------- 294 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCc-----------------------
Confidence 5799999999887632 2489999999999986555544444432110
Q ss_pred cCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCch--HHHHHHh-----cCCCCEEEeChHHHHHHHhc
Q psy9399 93 FKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPY--LRQMQLL-----SRNPEILLATPGRLIDHMNS 165 (453)
Q Consensus 93 ~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~Ilv~T~~~l~~~l~~ 165 (453)
.+--.+.||++|. .|+..|.++|.+|.... .+....+++.... ......+ .-...|++.+.+.+..+...
T Consensus 295 -~~~~~k~lVV~P~-sLv~nWkkEF~KWl~~~-~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~ 371 (776)
T KOG0390|consen 295 -KPLINKPLVVAPS-SLVNNWKKEFGKWLGNH-RINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK 371 (776)
T ss_pred -cccccccEEEccH-HHHHHHHHHHHHhcccc-ccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH
Confidence 0112588999998 78899999999997643 3666677776663 1111111 11346888899988765543
Q ss_pred CCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecCh-HHHHHHHh---------------------
Q psy9399 166 GKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDG-IVGNMAEN--------------------- 223 (453)
Q Consensus 166 ~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~-~~~~~~~~--------------------- 223 (453)
- ....++++|+||.|++-+.. ..+...+..+ +..+.|++|+||-. .+......
T Consensus 372 i--l~~~~glLVcDEGHrlkN~~--s~~~kaL~~l-~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~ 446 (776)
T KOG0390|consen 372 I--LLIRPGLLVCDEGHRLKNSD--SLTLKALSSL-KTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEI 446 (776)
T ss_pred H--hcCCCCeEEECCCCCccchh--hHHHHHHHhc-CCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhc
Confidence 2 34678999999999987654 2222223333 23457999999821 01000000
Q ss_pred --------------------------hcCCCeEEEec-ccccccccceEEEEEEcchhhHHHHHHHHHh-----------
Q psy9399 224 --------------------------ITKDPLILKVN-SIEKKQKNITQSILFVDDILHKNRLLDYLLR----------- 265 (453)
Q Consensus 224 --------------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------- 265 (453)
+...-...... ......+......+..........++..+++
T Consensus 447 ~i~~~~~~~~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~ 526 (776)
T KOG0390|consen 447 PILRGRDADASEEDREREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYA 526 (776)
T ss_pred ccccccCCCcchhhhhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcch
Confidence 00000000000 0111112222222222222211111111111
Q ss_pred -----------------------------------------------------------------hCCCCcEEEEeccch
Q psy9399 266 -----------------------------------------------------------------DKRVGQAVVFTATKR 280 (453)
Q Consensus 266 -----------------------------------------------------------------~~~~~~~lvf~~~~~ 280 (453)
.....++.+..|-+.
T Consensus 527 l~~~~~L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~ 606 (776)
T KOG0390|consen 527 LELITKLKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQ 606 (776)
T ss_pred hhHHHHHHHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHH
Confidence 011122333334344
Q ss_pred hHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCc--c-EEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHh
Q psy9399 281 DADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRI--K-ILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357 (453)
Q Consensus 281 ~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~--~-vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~ 357 (453)
..+.+.+..+-.|..+..+||.|+..+|..+++.|.+-.- . .|.+|.+.+.|+++-+.+.||.+|++|++..-.|++
T Consensus 607 tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAm 686 (776)
T KOG0390|consen 607 TLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAM 686 (776)
T ss_pred HHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHH
Confidence 4444445555579999999999999999999999997543 3 566779999999999999999999999999999999
Q ss_pred hhccCCCCCccEEEE
Q psy9399 358 GRTGRAGRNGFAVSL 372 (453)
Q Consensus 358 GR~~R~g~~g~~~~~ 372 (453)
+|+-|.|+...|+++
T Consensus 687 aR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 687 ARAWRDGQKKPVYIY 701 (776)
T ss_pred HHhccCCCcceEEEE
Confidence 999999998666544
No 135
>KOG4150|consensus
Probab=99.80 E-value=1.4e-18 Score=162.65 Aligned_cols=346 Identities=11% Similarity=0.068 Sum_probs=234.4
Q ss_pred HHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhc
Q psy9399 12 VLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERL 91 (453)
Q Consensus 12 ~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (453)
+.+-+..+.-.+...+|.+++..+-+|++..+...|.+||.+++.......+...
T Consensus 275 ~~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~------------------------- 329 (1034)
T KOG4150|consen 275 IRSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLC------------------------- 329 (1034)
T ss_pred HHHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcC-------------------------
Confidence 3444555666678899999999999999999999999999999988877665542
Q ss_pred ccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCe--eEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCC
Q psy9399 92 RFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKI--KAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKIN 169 (453)
Q Consensus 92 ~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~ 169 (453)
..-..+++.|+++++....+.+.-.....+.. .++..+.+.....+......+..++++.|+........+...
T Consensus 330 ----~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~ 405 (1034)
T KOG4150|consen 330 ----HATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLC 405 (1034)
T ss_pred ----cccceecchhHHHHhhccCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccc
Confidence 23378999999999876544332221111112 233455666666666666778899999999876665544433
Q ss_pred CC----CccEEEEechhhhcccC---ChHHHHHHHhhC-----CCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccc
Q psy9399 170 FS----HLQILVLDEADRMLDMG---FINDIEKIVDAT-----PVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237 (453)
Q Consensus 170 ~~----~~~~iIiDE~h~~~~~~---~~~~~~~~~~~~-----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (453)
+. +..+++.||+|.+.... ....++++.+.+ ....|++-.+||+..........+.-+...+......
T Consensus 406 ~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGS 485 (1034)
T KOG4150|consen 406 YNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGS 485 (1034)
T ss_pred cccHHHHHHHhcccceeeeecchhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCC
Confidence 33 34679999999765321 122333333332 2456899999998776665555444333333222211
Q ss_pred cccccceEEEEEEcch--------hh----HHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhh----CCC----cee
Q psy9399 238 KKQKNITQSILFVDDI--------LH----KNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNI----SGF----LAA 297 (453)
Q Consensus 238 ~~~~~~~~~~~~~~~~--------~~----~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~----~~~----~~~ 297 (453)
. ........+.++. .. ...++..++.+ +-+++.||.+++-|+.+....++ .+. .+.
T Consensus 486 P--s~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~--~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~ 561 (1034)
T KOG4150|consen 486 P--SSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQH--GLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAIT 561 (1034)
T ss_pred C--CccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHc--CCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 1 1222233332221 11 11233333333 35899999999999987766553 221 366
Q ss_pred ecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEE--EeCh
Q psy9399 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVS--LVNH 375 (453)
Q Consensus 298 ~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~--~~~~ 375 (453)
.+.|+...++|.++....-.|+..-+|+|.+++-|+|+..++.|+..++|.|...+.|..|||||++++..++. ...+
T Consensus 562 SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~P 641 (1034)
T KOG4150|consen 562 SYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGP 641 (1034)
T ss_pred hhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999988865443 4445
Q ss_pred hhHHHHHHHHHHhhc
Q psy9399 376 AERMNIKKIERFTKQ 390 (453)
Q Consensus 376 ~~~~~~~~~~~~~~~ 390 (453)
-|..++..-.....+
T Consensus 642 VDQ~Y~~HP~~l~~~ 656 (1034)
T KOG4150|consen 642 VDQYYMSHPDKLFGS 656 (1034)
T ss_pred hhhHhhcCcHHHhCC
Confidence 566666544444443
No 136
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.80 E-value=1.1e-16 Score=164.10 Aligned_cols=104 Identities=25% Similarity=0.412 Sum_probs=79.2
Q ss_pred CCcEEEEeccchhHHHHHHHHhhC-CCceeecCCCCCHHHHHHHHHHHh----cCCccEEEEeCCcccCCCCCC--CcEE
Q psy9399 269 VGQAVVFTATKRDADIIADRLNIS-GFLAAPLHGDLHQNARNRTLENLR----RGRIKILVATDVAARGIDVPA--ITHV 341 (453)
Q Consensus 269 ~~~~lvf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~----~g~~~vLv~T~~~~~Gvdi~~--~~~V 341 (453)
.+++|||++|.+..+.+++.|... +.. ...+|.. .+..+++.|+ .|+..||++|+.+++|||+|+ +++|
T Consensus 534 ~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~v 609 (697)
T PRK11747 534 HKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQV 609 (697)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEE
Confidence 456899999999999999999753 333 3445542 4677887776 467789999999999999996 6789
Q ss_pred EEcCCCCC-h-----------------------------hHHHHHhhhccCCCCCccEEEEeChh
Q psy9399 342 FNYDLPKF-P-----------------------------EDYVHRIGRTGRAGRNGFAVSLVNHA 376 (453)
Q Consensus 342 i~~~~~~~-~-----------------------------~~~~Q~~GR~~R~g~~g~~~~~~~~~ 376 (453)
|+...|.. + ..+.|.+||+.|...+..++++++.+
T Consensus 610 II~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 610 IITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred EEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 98887752 1 12459999999998776677777776
No 137
>KOG0389|consensus
Probab=99.79 E-value=4.4e-18 Score=165.02 Aligned_cols=322 Identities=17% Similarity=0.227 Sum_probs=211.0
Q ss_pred CCCCCCcHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccC
Q psy9399 19 VGYTKPTGVQEQAIPAAI----SGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFK 94 (453)
Q Consensus 19 ~~~~~~~~~Q~~~~~~~~----~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (453)
.++ ++.+||.-.++.+. .+-+.++.-.+|-|||.- .++.+..|.. .
T Consensus 396 s~i-~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq----------------------------~ 445 (941)
T KOG0389|consen 396 SGI-QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQ----------------------------I 445 (941)
T ss_pred CCC-cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHH----------------------------c
Confidence 355 48899998888754 334689999999999963 4444555544 2
Q ss_pred CCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcC----CCCEEEeChHHHHHHHh-cCCCC
Q psy9399 95 PAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSR----NPEILLATPGRLIDHMN-SGKIN 169 (453)
Q Consensus 95 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~Ilv~T~~~l~~~l~-~~~~~ 169 (453)
...+.-||+||+..| +.|.+++.+|+ +.+++-.++|........+.... +.+|+++|+......-. +..+.
T Consensus 446 g~~gpHLVVvPsSTl-eNWlrEf~kwC---Psl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk 521 (941)
T KOG0389|consen 446 GNPGPHLVVVPSSTL-ENWLREFAKWC---PSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLK 521 (941)
T ss_pred CCCCCcEEEecchhH-HHHHHHHHHhC---CceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHH
Confidence 224467999999776 77888888877 46888888888876666555432 67899999876532110 01112
Q ss_pred CCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecCh-----------------------HH---------
Q psy9399 170 FSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDG-----------------------IV--------- 217 (453)
Q Consensus 170 ~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~-----------------------~~--------- 217 (453)
-.+++++|+||.|++.+.. ...+..++..- ....+++|+||-. .+
T Consensus 522 ~~~~n~viyDEgHmLKN~~-SeRy~~LM~I~--An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~ 598 (941)
T KOG0389|consen 522 NQKFNYVIYDEGHMLKNRT-SERYKHLMSIN--ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKT 598 (941)
T ss_pred hccccEEEecchhhhhccc-hHHHHHhcccc--ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCC
Confidence 3568899999999988765 23333333322 3356888888710 00
Q ss_pred ---------------------------HHHHHhhcC----CCeEEE---ec-------------------ccccc--ccc
Q psy9399 218 ---------------------------GNMAENITK----DPLILK---VN-------------------SIEKK--QKN 242 (453)
Q Consensus 218 ---------------------------~~~~~~~~~----~~~~~~---~~-------------------~~~~~--~~~ 242 (453)
.+.....+. +-..+. .. ....+ ...
T Consensus 599 ~d~d~e~~~l~qerIsrAK~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~ 678 (941)
T KOG0389|consen 599 SDGDIENALLSQERISRAKTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKS 678 (941)
T ss_pred ccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhcccccccccccc
Confidence 000000000 000000 00 00000 000
Q ss_pred ---------------ceEEEEE---------------------------------------------------Ecc----
Q psy9399 243 ---------------ITQSILF---------------------------------------------------VDD---- 252 (453)
Q Consensus 243 ---------------~~~~~~~---------------------------------------------------~~~---- 252 (453)
+...++. ..+
T Consensus 679 ~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~m 758 (941)
T KOG0389|consen 679 GNVLMQLRKAANHPLLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWM 758 (941)
T ss_pred chHHHHHHHHhcChhHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhh
Confidence 0000000 000
Q ss_pred hhhHHHHHHHHHhh--CCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCC-cc-EEEEeCC
Q psy9399 253 ILHKNRLLDYLLRD--KRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGR-IK-ILVATDV 328 (453)
Q Consensus 253 ~~~~~~~~~~l~~~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~-vLv~T~~ 328 (453)
.+.+...+..++.. ..+.++|||.......+-+...|...++....+.|...-.+|..+++.|...+ +. .|++|.+
T Consensus 759 dSgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKA 838 (941)
T KOG0389|consen 759 DSGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKA 838 (941)
T ss_pred hhhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeecc
Confidence 01122333334332 45589999999999999999999999999999999999999999999999765 33 5799999
Q ss_pred cccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCc--cEEEEeChhh
Q psy9399 329 AARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNG--FAVSLVNHAE 377 (453)
Q Consensus 329 ~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g--~~~~~~~~~~ 377 (453)
.+.|||+..+++||++|...++-+=.|.--||+|.|+.. .++.+++...
T Consensus 839 GG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~T 889 (941)
T KOG0389|consen 839 GGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKST 889 (941)
T ss_pred CcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCc
Confidence 999999999999999999999999999999999999874 4555666543
No 138
>KOG0392|consensus
Probab=99.79 E-value=6.7e-18 Score=170.22 Aligned_cols=322 Identities=16% Similarity=0.215 Sum_probs=209.5
Q ss_pred CCcHHHHHHHHHHh--cC--CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCc
Q psy9399 23 KPTGVQEQAIPAAI--SG--RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP 98 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~--~~--~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
.+|.||++.++.+. +. =+.++|-.+|-|||+-.+-.+.....+++.. .......
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~----------------------~~e~~~~ 1032 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSE----------------------SSEFNRL 1032 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhccc----------------------chhhccC
Confidence 35899999887753 32 3689999999999987655555444443111 0122344
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEE
Q psy9399 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178 (453)
Q Consensus 99 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIi 178 (453)
..||+||. .|+..|..++.+|... +++....|+.......+...+..+|+|++++.+.+.+..- .-..+.++|+
T Consensus 1033 PSLIVCPs-TLtGHW~~E~~kf~pf---L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l--~~~~wNYcVL 1106 (1549)
T KOG0392|consen 1033 PSLIVCPS-TLTGHWKSEVKKFFPF---LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDYL--IKIDWNYCVL 1106 (1549)
T ss_pred CeEEECCc-hhhhHHHHHHHHhcch---hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHHH--HhcccceEEe
Confidence 58999998 8999999999988753 6777777777777777777778899999999986543211 1145779999
Q ss_pred echhhhcccCChHHHHHHHhhCCCCccEEEEEeecCh-------------------------------------------
Q psy9399 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDG------------------------------------------- 215 (453)
Q Consensus 179 DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~------------------------------------------- 215 (453)
||-|-+.+.. ..+....+.+.. .+.+.+|+||-.
T Consensus 1107 DEGHVikN~k--tkl~kavkqL~a-~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Ssk 1183 (1549)
T KOG0392|consen 1107 DEGHVIKNSK--TKLTKAVKQLRA-NHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSK 1183 (1549)
T ss_pred cCcceecchH--HHHHHHHHHHhh-cceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchh
Confidence 9999876653 222222223222 246788888810
Q ss_pred -------------------HHHHHHHhhcCC-Ce---------------------------EEEe--ccccccccc----
Q psy9399 216 -------------------IVGNMAENITKD-PL---------------------------ILKV--NSIEKKQKN---- 242 (453)
Q Consensus 216 -------------------~~~~~~~~~~~~-~~---------------------------~~~~--~~~~~~~~~---- 242 (453)
.+.++....+.+ |. .+.. .........
T Consensus 1184 e~EaG~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~H 1263 (1549)
T KOG0392|consen 1184 EQEAGVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTH 1263 (1549)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHH
Confidence 000000000000 00 0000 000000000
Q ss_pred c-----------eEEEEEEcc-----------------------hhhHHHHHHHHHhh----------------CCCCcE
Q psy9399 243 I-----------TQSILFVDD-----------------------ILHKNRLLDYLLRD----------------KRVGQA 272 (453)
Q Consensus 243 ~-----------~~~~~~~~~-----------------------~~~~~~~~~~l~~~----------------~~~~~~ 272 (453)
+ .+.-....+ ...|...+..++.. -.++++
T Consensus 1264 vFqaLqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRi 1343 (1549)
T KOG0392|consen 1264 VFQALQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRI 1343 (1549)
T ss_pred HHHHHHHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhcccee
Confidence 0 000000100 01122333333332 134699
Q ss_pred EEEeccchhHHHHHHHHhhC---CCceeecCCCCCHHHHHHHHHHHhcC-CccEE-EEeCCcccCCCCCCCcEEEEcCCC
Q psy9399 273 VVFTATKRDADIIADRLNIS---GFLAAPLHGDLHQNARNRTLENLRRG-RIKIL-VATDVAARGIDVPAITHVFNYDLP 347 (453)
Q Consensus 273 lvf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vL-v~T~~~~~Gvdi~~~~~Vi~~~~~ 347 (453)
||||.-+..++.+.+-|-+. .+....+.|..++.+|.++.++|.++ .++|| ++|.+.+-|+|+.+.+.||+++-.
T Consensus 1344 LIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHD 1423 (1549)
T KOG0392|consen 1344 LIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHD 1423 (1549)
T ss_pred EEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecC
Confidence 99999999999999988764 44566899999999999999999999 78876 566999999999999999999999
Q ss_pred CChhHHHHHhhhccCCCCCc--cEEEEeCh
Q psy9399 348 KFPEDYVHRIGRTGRAGRNG--FAVSLVNH 375 (453)
Q Consensus 348 ~~~~~~~Q~~GR~~R~g~~g--~~~~~~~~ 375 (453)
|++..=+|.+-||+|.|+.. .+|.++..
T Consensus 1424 WNPMrDLQAMDRAHRIGQKrvVNVyRlItr 1453 (1549)
T KOG0392|consen 1424 WNPMRDLQAMDRAHRIGQKRVVNVYRLITR 1453 (1549)
T ss_pred CCchhhHHHHHHHHhhcCceeeeeeeehhc
Confidence 99999999999999999884 45555554
No 139
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.79 E-value=4.1e-17 Score=163.70 Aligned_cols=275 Identities=18% Similarity=0.142 Sum_probs=174.9
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCc
Q psy9399 19 VGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP 98 (453)
Q Consensus 19 ~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
+|+ .|++.|--..-.+ .+.-+..+.||.|||+++.+|+.-.... |.
T Consensus 73 lG~-r~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL~-------------------------------G~ 118 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNALT-------------------------------GK 118 (870)
T ss_pred hCC-CCCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHhc-------------------------------CC
Confidence 677 4888886654333 3568999999999999999998654333 55
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHH-HHHHhcCC------CCCC
Q psy9399 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRL-IDHMNSGK------INFS 171 (453)
Q Consensus 99 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~~------~~~~ 171 (453)
.|.|++++..|+.+-+++...+....+ +.++...++.+.......+ .+||+.+|...| +++|+.+. ...+
T Consensus 119 ~VhVvT~NdyLA~RD~e~m~pvy~~LG-Lsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r 195 (870)
T CHL00122 119 GVHIVTVNDYLAKRDQEWMGQIYRFLG-LTVGLIQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVVQR 195 (870)
T ss_pred ceEEEeCCHHHHHHHHHHHHHHHHHcC-CceeeeCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhhcc
Confidence 899999999999998888888777666 8888887777765544444 469999998765 44444332 1246
Q ss_pred CccEEEEechhhhc-ccC---------------ChH--------------------------------HHHHH-------
Q psy9399 172 HLQILVLDEADRML-DMG---------------FIN--------------------------------DIEKI------- 196 (453)
Q Consensus 172 ~~~~iIiDE~h~~~-~~~---------------~~~--------------------------------~~~~~------- 196 (453)
.+.++|+||+|.++ |.. ... .+..+
T Consensus 196 ~~~faIVDEvDSiLIDeArTPLiISg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly 275 (870)
T CHL00122 196 PFNYCIIDEVDSILIDEARTPLIISGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLY 275 (870)
T ss_pred ccceeeeecchhheeccCCCceeccCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCcccc
Confidence 68899999999643 110 000 00000
Q ss_pred ----------HhhC------------------------------------------------------------------
Q psy9399 197 ----------VDAT------------------------------------------------------------------ 200 (453)
Q Consensus 197 ----------~~~~------------------------------------------------------------------ 200 (453)
..++
T Consensus 276 ~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~Qnf 355 (870)
T CHL00122 276 SANDPWIPYILNALKAKELFFKNVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNF 355 (870)
T ss_pred ccccHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHH
Confidence 0000
Q ss_pred -CCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccccccceEEEEEEcch-hhHHHHHHHHHh-hCCCCcEEEEec
Q psy9399 201 -PVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDI-LHKNRLLDYLLR-DKRVGQAVVFTA 277 (453)
Q Consensus 201 -~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~-~~~~~~~lvf~~ 277 (453)
+....+.+||+|....-..+.+.+..+ ........+.. ..........+. .....++..+.. +..+.|+||-|.
T Consensus 356 Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~-vv~IPtnkp~~--R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~ 432 (870)
T CHL00122 356 FLLYPKLSGMTGTAKTEELEFEKIYNLE-VVCIPTHRPML--RKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTT 432 (870)
T ss_pred HHhCchhcccCCCCHHHHHHHHHHhCCC-EEECCCCCCcc--ceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeC
Confidence 001157777777765444444433332 22211111111 111111222222 233345555444 356789999999
Q ss_pred cchhHHHHHHHHhhCCCceeecCCCC--CHHHHHHHHHHHhcCC-ccEEEEeCCcccCCCCC
Q psy9399 278 TKRDADIIADRLNISGFLAAPLHGDL--HQNARNRTLENLRRGR-IKILVATDVAARGIDVP 336 (453)
Q Consensus 278 ~~~~~~~l~~~L~~~~~~~~~~~~~~--~~~~r~~~~~~f~~g~-~~vLv~T~~~~~Gvdi~ 336 (453)
|.+..+.++..|...|++..++++.- ...+-..+-+ .|. -.|.|||+++++|.||.
T Consensus 433 SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~---AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 433 TIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ---AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred CHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh---cCCCCcEEEeccccCCCcCee
Confidence 99999999999999999999999873 2333333333 343 45899999999999974
No 140
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.78 E-value=4.5e-18 Score=138.52 Aligned_cols=118 Identities=45% Similarity=0.732 Sum_probs=106.0
Q ss_pred hHHHHHHHHHhhC--CCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccC
Q psy9399 255 HKNRLLDYLLRDK--RVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARG 332 (453)
Q Consensus 255 ~~~~~~~~l~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~G 332 (453)
.+...+..++... .++++||||++...++.+++.|.+.+..+..+||+++..+|..+++.|.+|...+|++|+++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 3444444444443 46899999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEE
Q psy9399 333 IDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSL 372 (453)
Q Consensus 333 vdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~ 372 (453)
+|+|.+++||+++.+++..++.|++||++|.|+.|.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998887753
No 141
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.76 E-value=3.1e-16 Score=162.01 Aligned_cols=113 Identities=21% Similarity=0.252 Sum_probs=84.9
Q ss_pred HHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCc-eeecCCCCCHHHHHHHHHHHhcCCc-cEEEEeCCcccCCCCCC
Q psy9399 260 LDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFL-AAPLHGDLHQNARNRTLENLRRGRI-KILVATDVAARGIDVPA 337 (453)
Q Consensus 260 ~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~~~r~~~~~~f~~g~~-~vLv~T~~~~~Gvdi~~ 337 (453)
+..++...+ +++|||++|.+.++.+.+.+...... ....+|..+ +...++.|+++.- .++|+|..+++|||+|+
T Consensus 471 i~~~~~~~~-~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g 546 (654)
T COG1199 471 LREILKASP-GGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPG 546 (654)
T ss_pred HHHHHhhcC-CCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCC
Confidence 333344444 59999999999999999999876542 344455443 4578888887655 89999999999999996
Q ss_pred --CcEEEEcCCCCC------------------------------hhHHHHHhhhccCCCCCccEEEEeChh
Q psy9399 338 --ITHVFNYDLPKF------------------------------PEDYVHRIGRTGRAGRNGFAVSLVNHA 376 (453)
Q Consensus 338 --~~~Vi~~~~~~~------------------------------~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 376 (453)
+..||....|.. ...+.|.+||+.|...+..++++++.+
T Consensus 547 ~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R 617 (654)
T COG1199 547 DALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKR 617 (654)
T ss_pred CCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEeccc
Confidence 567888887752 234569999999987776677777765
No 142
>KOG1000|consensus
Probab=99.76 E-value=3e-17 Score=151.40 Aligned_cols=324 Identities=14% Similarity=0.186 Sum_probs=210.1
Q ss_pred CCCcHHHHHHHHHHh-cCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceE
Q psy9399 22 TKPTGVQEQAIPAAI-SGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRM 100 (453)
Q Consensus 22 ~~~~~~Q~~~~~~~~-~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (453)
..+-|+|.+.+...+ .|..+++.-.+|-|||+-++..+... .. .-..
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yy-ra-------------------------------Ewpl 244 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYY-RA-------------------------------EWPL 244 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHH-hh-------------------------------cCcE
Confidence 356789999777655 56679999999999998654443332 22 2368
Q ss_pred EEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEec
Q psy9399 101 LVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180 (453)
Q Consensus 101 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE 180 (453)
||+||. .+-..|++.+.+|......+.+ +.++.+... .+.....|.|.+++.+..+-..- .-.+++++|+||
T Consensus 245 liVcPA-svrftWa~al~r~lps~~pi~v--v~~~~D~~~---~~~t~~~v~ivSye~ls~l~~~l--~~~~~~vvI~DE 316 (689)
T KOG1000|consen 245 LIVCPA-SVRFTWAKALNRFLPSIHPIFV--VDKSSDPLP---DVCTSNTVAIVSYEQLSLLHDIL--KKEKYRVVIFDE 316 (689)
T ss_pred EEEecH-HHhHHHHHHHHHhcccccceEE--EecccCCcc---ccccCCeEEEEEHHHHHHHHHHH--hcccceEEEEec
Confidence 999998 6668899999999866554333 333333211 11223579999999885543211 235589999999
Q ss_pred hhhhcccCChHHHHHHHhhCCCCccEEEEEeecC----h---------------HHHHHHHhhcCC---CeEEEecc---
Q psy9399 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLD----G---------------IVGNMAENITKD---PLILKVNS--- 235 (453)
Q Consensus 181 ~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~----~---------------~~~~~~~~~~~~---~~~~~~~~--- 235 (453)
.|++.+.. ..........+....++|++|+||. . ....+...++.- +.......
T Consensus 317 sH~Lk~sk-tkr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tn 395 (689)
T KOG1000|consen 317 SHMLKDSK-TKRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTN 395 (689)
T ss_pred hhhhhccc-hhhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCC
Confidence 99887654 4446666666666778999999983 1 011111111110 00000000
Q ss_pred ---------------------cccccccceEEEEEEcc---------------------hhhHH----------------
Q psy9399 236 ---------------------IEKKQKNITQSILFVDD---------------------ILHKN---------------- 257 (453)
Q Consensus 236 ---------------------~~~~~~~~~~~~~~~~~---------------------~~~~~---------------- 257 (453)
...-++..++..+.... ...+.
T Consensus 396 l~EL~~lL~k~lMIRRlK~dvL~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~ 475 (689)
T KOG1000|consen 396 LEELAALLFKRLMIRRLKADVLKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAA 475 (689)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccH
Confidence 00000011111111100 00000
Q ss_pred HHHHHHHh-----hCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcC-CccE-EEEeCCcc
Q psy9399 258 RLLDYLLR-----DKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRG-RIKI-LVATDVAA 330 (453)
Q Consensus 258 ~~~~~l~~-----~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~v-Lv~T~~~~ 330 (453)
.+...++. ...+.+.+||+......+.+...+.++++....+.|..++.+|....+.|+.+ ++.| +++-.+.+
T Consensus 476 av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~g 555 (689)
T KOG1000|consen 476 AVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAG 555 (689)
T ss_pred HHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecc
Confidence 11111222 24567899999999999999999999999999999999999999999999965 4444 34447789
Q ss_pred cCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEe--Ch--hhHHHHHHHHH
Q psy9399 331 RGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLV--NH--AERMNIKKIER 386 (453)
Q Consensus 331 ~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~--~~--~~~~~~~~~~~ 386 (453)
.|+++...+.|++..+++++.-++|.--|++|.|+...+.+++ .. .|.+.+..+.+
T Consensus 556 vGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~ 615 (689)
T KOG1000|consen 556 VGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQ 615 (689)
T ss_pred cceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHH
Confidence 9999999999999999999999999999999999986654443 22 35555555543
No 143
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.75 E-value=3.5e-18 Score=125.24 Aligned_cols=78 Identities=44% Similarity=0.808 Sum_probs=75.4
Q ss_pred HHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCC
Q psy9399 287 DRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAG 364 (453)
Q Consensus 287 ~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g 364 (453)
++|+..++.+..+||++++.+|..+++.|++++..|||||+++++|+|+|.+++||++++|++..+|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 467889999999999999999999999999999999999999999999999999999999999999999999999986
No 144
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.75 E-value=7.4e-17 Score=133.12 Aligned_cols=144 Identities=41% Similarity=0.546 Sum_probs=112.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATE 118 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 118 (453)
+++++.+|||+|||.+++.++....... ...+++|++|++.++.|+.+.+.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~-----------------------------~~~~~lv~~p~~~l~~~~~~~~~ 51 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL-----------------------------KGGQVLVLAPTRELANQVAERLK 51 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc-----------------------------cCCCEEEEcCcHHHHHHHHHHHH
Confidence 3689999999999998888887765531 24589999999999999999888
Q ss_pred HHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHh
Q psy9399 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVD 198 (453)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~ 198 (453)
.+... ......+.+...............+|+++|++.+...+.........++++|+||+|.+..............
T Consensus 52 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~ 129 (144)
T cd00046 52 ELFGE--GIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILL 129 (144)
T ss_pred HHhhC--CcEEEEEecCcchhHHHHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHh
Confidence 87654 3666677777666665555667889999999999888877655567889999999999887765444333445
Q ss_pred hCCCCccEEEEEeec
Q psy9399 199 ATPVTRQTMLFSATL 213 (453)
Q Consensus 199 ~~~~~~~~i~~SAT~ 213 (453)
......+++++||||
T Consensus 130 ~~~~~~~~i~~saTp 144 (144)
T cd00046 130 KLPKDRQVLLLSATP 144 (144)
T ss_pred hCCccceEEEEeccC
Confidence 556777899999996
No 145
>KOG0925|consensus
Probab=99.74 E-value=1.2e-16 Score=147.15 Aligned_cols=324 Identities=18% Similarity=0.191 Sum_probs=196.6
Q ss_pred CCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccc
Q psy9399 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNN 82 (453)
Q Consensus 3 ~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 82 (453)
|..+..++...+.|++-.--..+..+.+-+..+.+++-+++.|.||||||.-.--+++......
T Consensus 27 f~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~---------------- 90 (699)
T KOG0925|consen 27 FNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH---------------- 90 (699)
T ss_pred CCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh----------------
Confidence 5666777777777775322224555555666666777899999999999976544455443331
Q ss_pred cchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHH
Q psy9399 83 KIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDH 162 (453)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~ 162 (453)
...+..--|.+.-+.+++.+..+-- ++..+...|-.-. ..+-.....-+-.||.++|++.
T Consensus 91 --------------~~~v~CTQprrvaamsva~RVadEM----Dv~lG~EVGysIr--fEdC~~~~T~Lky~tDgmLlrE 150 (699)
T KOG0925|consen 91 --------------LTGVACTQPRRVAAMSVAQRVADEM----DVTLGEEVGYSIR--FEDCTSPNTLLKYCTDGMLLRE 150 (699)
T ss_pred --------------ccceeecCchHHHHHHHHHHHHHHh----ccccchhcccccc--ccccCChhHHHHHhcchHHHHH
Confidence 2356666788888888877655421 1222111111100 0000001111235777777666
Q ss_pred HhcCCCCCCCccEEEEechhhhc-ccC-ChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEeccccccc
Q psy9399 163 MNSGKINFSHLQILVLDEADRML-DMG-FINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240 (453)
Q Consensus 163 l~~~~~~~~~~~~iIiDE~h~~~-~~~-~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (453)
..... .+.++++||+||+|.=. ..+ ..-.+..++... ...++|.+|||+.. ..+. .++.++..+.+...
T Consensus 151 ams~p-~l~~y~viiLDeahERtlATDiLmGllk~v~~~r-pdLk~vvmSatl~a--~Kfq-~yf~n~Pll~vpg~---- 221 (699)
T KOG0925|consen 151 AMSDP-LLGRYGVIILDEAHERTLATDILMGLLKEVVRNR-PDLKLVVMSATLDA--EKFQ-RYFGNAPLLAVPGT---- 221 (699)
T ss_pred HhhCc-ccccccEEEechhhhhhHHHHHHHHHHHHHHhhC-CCceEEEeecccch--HHHH-HHhCCCCeeecCCC----
Confidence 55544 47899999999999522 111 222333344443 47789999999753 3444 35555555555431
Q ss_pred ccceEEEEEEcchhhHHH---HHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhC---------CCceeecCCCCCHHHH
Q psy9399 241 KNITQSILFVDDILHKNR---LLDYLLRDKRVGQAVVFTATKRDADIIADRLNIS---------GFLAAPLHGDLHQNAR 308 (453)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r 308 (453)
..+...+..-........ .+..+......|-+|||....++.+..++.+... ...|..+| +.++
T Consensus 222 ~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~q 297 (699)
T KOG0925|consen 222 HPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQ 297 (699)
T ss_pred CceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhh
Confidence 222222222222222222 3333444566789999999999998888887631 24566666 3344
Q ss_pred HHHHHHHhc---C--CccEEEEeCCcccCCCCCCCcEEEEcCC------------------CCChhHHHHHhhhccCCCC
Q psy9399 309 NRTLENLRR---G--RIKILVATDVAARGIDVPAITHVFNYDL------------------PKFPEDYVHRIGRTGRAGR 365 (453)
Q Consensus 309 ~~~~~~f~~---g--~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~------------------~~~~~~~~Q~~GR~~R~g~ 365 (453)
..+++--.. | ..+|+|+|.+++..+-++++.+||+-++ |.|..+-.||.||+||. .
T Consensus 298 q~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~ 376 (699)
T KOG0925|consen 298 QRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-R 376 (699)
T ss_pred ccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-C
Confidence 444433221 2 2469999999999999999999997553 34566778999999997 7
Q ss_pred CccEEEEeChh
Q psy9399 366 NGFAVSLVNHA 376 (453)
Q Consensus 366 ~g~~~~~~~~~ 376 (453)
+|.|+.++.+.
T Consensus 377 pGkcfrLYte~ 387 (699)
T KOG0925|consen 377 PGKCFRLYTEE 387 (699)
T ss_pred CCceEEeecHH
Confidence 89999998764
No 146
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=8.6e-16 Score=154.05 Aligned_cols=130 Identities=21% Similarity=0.181 Sum_probs=96.0
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCc
Q psy9399 19 VGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP 98 (453)
Q Consensus 19 ~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
+|. .|++.|--.--.+ .+.-+..+.||.|||+++.+|+.-.... |.
T Consensus 82 lG~-r~ydVQliGgl~L--h~G~IAEM~TGEGKTL~atlpaylnAL~-------------------------------Gk 127 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVL--HEGQIAEMKTGEGKTLVATLPSYLNALT-------------------------------GK 127 (939)
T ss_pred hCC-CcchhHHHhhhhh--cCCceeeecCCCChhHHHHHHHHHHhhc-------------------------------CC
Confidence 576 5778886554444 3457999999999999999998876554 56
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHH-HHHHhcC------CCCCC
Q psy9399 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRL-IDHMNSG------KINFS 171 (453)
Q Consensus 99 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~------~~~~~ 171 (453)
.|-|++++.-||..-++++..+....+ +.++...++....+.... =.+||+.+|+..| +++|+.+ ....+
T Consensus 128 gVhVVTvNdYLA~RDae~m~~vy~~LG-Ltvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR 204 (939)
T PRK12902 128 GVHVVTVNDYLARRDAEWMGQVHRFLG-LSVGLIQQDMSPEERKKN--YACDITYATNSELGFDYLRDNMATDISEVVQR 204 (939)
T ss_pred CeEEEeCCHHHHHhHHHHHHHHHHHhC-CeEEEECCCCChHHHHHh--cCCCeEEecCCcccccchhhhhcccccccccC
Confidence 899999999999988888777766665 888888776665444333 3689999999887 4444322 12346
Q ss_pred CccEEEEechhhhc
Q psy9399 172 HLQILVLDEADRML 185 (453)
Q Consensus 172 ~~~~iIiDE~h~~~ 185 (453)
.+.++|+||+|.++
T Consensus 205 ~~~faIVDEvDSIL 218 (939)
T PRK12902 205 PFNYCVIDEVDSIL 218 (939)
T ss_pred ccceEEEeccccee
Confidence 78899999999754
No 147
>KOG0951|consensus
Probab=99.73 E-value=4.5e-16 Score=157.68 Aligned_cols=319 Identities=16% Similarity=0.202 Sum_probs=212.4
Q ss_pred CcHHHHHHHHHHhcCC-cEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEE
Q psy9399 24 PTGVQEQAIPAAISGR-DLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLV 102 (453)
Q Consensus 24 ~~~~Q~~~~~~~~~~~-~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 102 (453)
..++|.++++.+.+.+ ++++++|+|||||.++-++++. .....++++
T Consensus 1144 ~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~--------------------------------~~~~~~~vy 1191 (1674)
T KOG0951|consen 1144 FNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR--------------------------------PDTIGRAVY 1191 (1674)
T ss_pred cCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC--------------------------------CccceEEEE
Confidence 4789999999988765 5999999999999988777765 123559999
Q ss_pred EcCcHHHHHHHHHHHH-HHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEech
Q psy9399 103 LTPTRELALQVTAATE-RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181 (453)
Q Consensus 103 l~P~~~L~~q~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~ 181 (453)
+.|.-+.+..++..+. ++... .+..++.++|........ ....+|+|+||+++-.. + ..+.+++.|.||.
T Consensus 1192 i~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~~lkl---~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~l 1262 (1674)
T KOG0951|consen 1192 IAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSLDLKL---LQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDEL 1262 (1674)
T ss_pred ecchHHHHHHHHHHHHHhhccc-cCceEEecCCccccchHH---hhhcceEEechhHHHHH-h----hhhhcceEeeehh
Confidence 9999999976655444 45444 457777777766654433 23468999999998654 2 5788999999999
Q ss_pred hhhcccC-----ChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccccccceEEEEEEcch---
Q psy9399 182 DRMLDMG-----FINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDI--- 253 (453)
Q Consensus 182 h~~~~~~-----~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 253 (453)
|.+.+.. ..-.++.+...+-+..+++.+|..+.+.-.. .++.....+...+.... ......+..++..
T Consensus 1263 h~igg~~g~v~evi~S~r~ia~q~~k~ir~v~ls~~lana~d~---ig~s~~~v~Nf~p~~R~-~Pl~i~i~~~~~~~~~ 1338 (1674)
T KOG0951|consen 1263 HLIGGVYGAVYEVICSMRYIASQLEKKIRVVALSSSLANARDL---IGASSSGVFNFSPSVRP-VPLEIHIQSVDISHFE 1338 (1674)
T ss_pred hhhcccCCceEEEEeeHHHHHHHHHhheeEEEeehhhccchhh---ccccccceeecCcccCC-CceeEEEEEeccchhH
Confidence 9877322 1112566666666777899999887653222 12222222222221111 1122122222111
Q ss_pred hhHH----HHHHHHHhh-CCCCcEEEEeccchhHHHHHHHHhh----------------------CCCceeecCCCCCHH
Q psy9399 254 LHKN----RLLDYLLRD-KRVGQAVVFTATKRDADIIADRLNI----------------------SGFLAAPLHGDLHQN 306 (453)
Q Consensus 254 ~~~~----~~~~~l~~~-~~~~~~lvf~~~~~~~~~l~~~L~~----------------------~~~~~~~~~~~~~~~ 306 (453)
.... .....+.+. ..+.+.+||++++++|..++.-|-. ...+..+-|.+++..
T Consensus 1339 ~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~ 1418 (1674)
T KOG0951|consen 1339 SRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSN 1418 (1674)
T ss_pred HHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcc
Confidence 1111 122233332 4557899999999999887765511 112233338899999
Q ss_pred HHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcC-----------CCCChhHHHHHhhhccCCCCCccEEEEeCh
Q psy9399 307 ARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYD-----------LPKFPEDYVHRIGRTGRAGRNGFAVSLVNH 375 (453)
Q Consensus 307 ~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~-----------~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~ 375 (453)
+...+-..|..|.+.|+|...- ..|+-.. .+.||..+ .+.+..+..|+.|+|.| .|.|++++..
T Consensus 1419 d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~ 1493 (1674)
T KOG0951|consen 1419 DQEIVQQLFEAGAIQVCVMSRD-CYGTKLK-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHT 1493 (1674)
T ss_pred hHHHHHHHHhcCcEEEEEEEcc-ccccccc-ceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecC
Confidence 9999999999999999999866 7887763 34444332 23467889999999998 5789999999
Q ss_pred hhHHHHHHHHHHhhcCCCcc
Q psy9399 376 AERMNIKKIERFTKQQIPIE 395 (453)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~ 395 (453)
+.+++ +++|+.+.+|.+
T Consensus 1494 ~~k~y---ykkfl~e~lPve 1510 (1674)
T KOG0951|consen 1494 PKKEY---YKKFLYEPLPVE 1510 (1674)
T ss_pred chHHH---HHHhccCcCchH
Confidence 88876 455888887765
No 148
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.72 E-value=3.7e-17 Score=141.50 Aligned_cols=153 Identities=20% Similarity=0.188 Sum_probs=102.0
Q ss_pred CCcHHHHHHHHHHhc-------CCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCC
Q psy9399 23 KPTGVQEQAIPAAIS-------GRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKP 95 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~~-------~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (453)
+|+++|.+++..+.+ .+.+++.+|||+|||.+++..+.....
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------------------------------- 51 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------------------------------- 51 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-------------------------------
Confidence 589999999999884 577999999999999987765554421
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEE----------EEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhc
Q psy9399 96 AQPRMLVLTPTRELALQVTAATERYGLYMKKIKAI----------SILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNS 165 (453)
Q Consensus 96 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~ 165 (453)
++++++|+..|+.|+.+.+..+.......... ...................+++++|.+.+......
T Consensus 52 ---~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~ 128 (184)
T PF04851_consen 52 ---KVLIVAPNISLLEQWYDEFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKE 128 (184)
T ss_dssp ---EEEEEESSHHHHHHHHHHHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH
T ss_pred ---ceeEecCHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhccc
Confidence 79999999999999999997665322111111 01111111222233345678999999999877653
Q ss_pred CC-----------CCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecC
Q psy9399 166 GK-----------INFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLD 214 (453)
Q Consensus 166 ~~-----------~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 214 (453)
.. ......++||+||+|++....- +..+.. .....+|++||||.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~~~~---~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 129 EKKIDESARRSYKLLKNKFDLVIIDEAHHYPSDSS---YREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp ---------GCHHGGGGSESEEEEETGGCTHHHHH---HHHHHH--SSCCEEEEEESS-S
T ss_pred ccccccchhhhhhhccccCCEEEEehhhhcCCHHH---HHHHHc--CCCCeEEEEEeCcc
Confidence 21 1235678999999998765431 344444 45567999999985
No 149
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.71 E-value=6.7e-15 Score=149.93 Aligned_cols=91 Identities=18% Similarity=0.102 Sum_probs=71.0
Q ss_pred EEEeccchhHHHHHHHHhhC------CCceeecCCCCCHHHHHHHHHHH----------------------hc----CCc
Q psy9399 273 VVFTATKRDADIIADRLNIS------GFLAAPLHGDLHQNARNRTLENL----------------------RR----GRI 320 (453)
Q Consensus 273 lvf~~~~~~~~~l~~~L~~~------~~~~~~~~~~~~~~~r~~~~~~f----------------------~~----g~~ 320 (453)
+|-+++++.+-.+++.|... .+.++.+|+..+...|..+++.. .+ +..
T Consensus 760 liR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~ 839 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHL 839 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCC
Confidence 78888888888888777542 24578899999988888877654 12 467
Q ss_pred cEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCC
Q psy9399 321 KILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRN 366 (453)
Q Consensus 321 ~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~ 366 (453)
.|+|+|++++.|+|+ +.+.+|- -+.+..+.+|++||+.|.+..
T Consensus 840 ~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 840 FIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRVNRHRLE 882 (1110)
T ss_pred eEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhcccccccC
Confidence 899999999999999 6676653 345689999999999998754
No 150
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.70 E-value=1.2e-14 Score=150.22 Aligned_cols=107 Identities=19% Similarity=0.225 Sum_probs=79.7
Q ss_pred CCcEEEEeccchhHHHHHHHHhhCCC-------ceeecCCCCCHHHHHHHHHHHhc----CCccEEEEe--CCcccCCCC
Q psy9399 269 VGQAVVFTATKRDADIIADRLNISGF-------LAAPLHGDLHQNARNRTLENLRR----GRIKILVAT--DVAARGIDV 335 (453)
Q Consensus 269 ~~~~lvf~~~~~~~~~l~~~L~~~~~-------~~~~~~~~~~~~~r~~~~~~f~~----g~~~vLv~T--~~~~~Gvdi 335 (453)
++.+|||++|....+.+.+.+...+. ...+.-+. ...++..+++.|++ |...||+|+ +.+++|||+
T Consensus 522 pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~-~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGIDf 600 (705)
T TIGR00604 522 PDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETK-DAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGIDF 600 (705)
T ss_pred CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCC-CcchHHHHHHHHHHHHhcCCceEEEEecCCcccCcccc
Confidence 47899999999999999998876432 11222221 22567889999964 456799999 899999999
Q ss_pred CC--CcEEEEcCCCC-Ch------------------------------hHHHHHhhhccCCCCCccEEEEeChh
Q psy9399 336 PA--ITHVFNYDLPK-FP------------------------------EDYVHRIGRTGRAGRNGFAVSLVNHA 376 (453)
Q Consensus 336 ~~--~~~Vi~~~~~~-~~------------------------------~~~~Q~~GR~~R~g~~g~~~~~~~~~ 376 (453)
++ ++.||..+.|. ++ ....|.+||+.|..++-.+++++|.+
T Consensus 601 ~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~iillD~R 674 (705)
T TIGR00604 601 CDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGSIVLLDKR 674 (705)
T ss_pred CCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEEEEEEehh
Confidence 96 67899888885 11 12349999999998886677777765
No 151
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.61 E-value=2.2e-15 Score=111.59 Aligned_cols=81 Identities=51% Similarity=0.837 Sum_probs=77.1
Q ss_pred HHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCC
Q psy9399 284 IIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRA 363 (453)
Q Consensus 284 ~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~ 363 (453)
.+++.|+..++.+..+||+++..+|..+++.|+++...||++|+++++|+|+|.+++||+++++++..+|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q psy9399 364 G 364 (453)
Q Consensus 364 g 364 (453)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 152
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.59 E-value=1.3e-13 Score=139.99 Aligned_cols=120 Identities=19% Similarity=0.253 Sum_probs=96.6
Q ss_pred HHHHHHHHh-hCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCC
Q psy9399 257 NRLLDYLLR-DKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDV 335 (453)
Q Consensus 257 ~~~~~~l~~-~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi 335 (453)
..++..+.. +..+.|+||-+.|++..+.+++.|...|++..++++.....+...+-+.=+.| .|-|||+++++|.||
T Consensus 615 ~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATNMAGRGTDI 692 (1112)
T PRK12901 615 NAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATNMAGRGTDI 692 (1112)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCC--cEEEeccCcCCCcCc
Confidence 344555544 35678999999999999999999999999998898886655555554443333 589999999999999
Q ss_pred C--------CCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhH
Q psy9399 336 P--------AITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAER 378 (453)
Q Consensus 336 ~--------~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 378 (453)
. +--+||....+.|..--.|..||+||.|.+|.+-.+++-.|.
T Consensus 693 kLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 693 KLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred ccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 6 223688888899999999999999999999999888887765
No 153
>KOG0386|consensus
Probab=99.58 E-value=2.9e-14 Score=142.19 Aligned_cols=118 Identities=23% Similarity=0.295 Sum_probs=101.5
Q ss_pred HHHHHHHHHhh--CCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCcc---EEEEeCCcc
Q psy9399 256 KNRLLDYLLRD--KRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIK---ILVATDVAA 330 (453)
Q Consensus 256 ~~~~~~~l~~~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vLv~T~~~~ 330 (453)
+.++++.++-. ..++++|.||....-...+..+|.-.++....+.|....++|...++.|..-..+ .|.+|...+
T Consensus 711 KfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstragg 790 (1157)
T KOG0386|consen 711 KFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGG 790 (1157)
T ss_pred HHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccc
Confidence 44555555543 4568999999999999999999999999999999999999999999999864433 678999999
Q ss_pred cCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEe
Q psy9399 331 RGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLV 373 (453)
Q Consensus 331 ~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~ 373 (453)
.|+|+..++.||+||..|++....|+--||.|.|+...|-++.
T Consensus 791 lglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~r 833 (1157)
T KOG0386|consen 791 LGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLR 833 (1157)
T ss_pred cccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeee
Confidence 9999999999999999999999999999999999886555443
No 154
>KOG4439|consensus
Probab=99.57 E-value=1.3e-13 Score=132.70 Aligned_cols=107 Identities=13% Similarity=0.240 Sum_probs=93.7
Q ss_pred hCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhc--CCccEEEEe-CCcccCCCCCCCcEEE
Q psy9399 266 DKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRR--GRIKILVAT-DVAARGIDVPAITHVF 342 (453)
Q Consensus 266 ~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~vLv~T-~~~~~Gvdi~~~~~Vi 342 (453)
.....+++|.........-+...|++.|.....+||....++|..+++.|.. |..+|++-. .+.+.|+|+-+.+|+|
T Consensus 743 ~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHli 822 (901)
T KOG4439|consen 743 TSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLI 822 (901)
T ss_pred hcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEE
Confidence 3455788888888888899999999999999999999999999999999984 445665444 8889999999999999
Q ss_pred EcCCCCChhHHHHHhhhccCCCCCccEEEE
Q psy9399 343 NYDLPKFPEDYVHRIGRTGRAGRNGFAVSL 372 (453)
Q Consensus 343 ~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~ 372 (453)
..|..|++.--.|..-|..|.|+...+++.
T Consensus 823 lvDlHWNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 823 LVDLHWNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred EEecccCHHHHHHHHHHHHHhcccCceEEE
Confidence 999999999999999999999999777654
No 155
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.56 E-value=6e-12 Score=119.32 Aligned_cols=297 Identities=18% Similarity=0.217 Sum_probs=206.3
Q ss_pred hhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCC----------ee--------EEEEECCCchHHHHHHhcC--
Q psy9399 88 KERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKK----------IK--------AISILGGMPYLRQMQLLSR-- 147 (453)
Q Consensus 88 ~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~----------~~--------~~~~~~~~~~~~~~~~~~~-- 147 (453)
.+-.++....++||||+|+|..|.++.+.+..+...... +. ...-.........+..+..
T Consensus 28 ~~~RDQGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN 107 (442)
T PF06862_consen 28 DEFRDQGFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGN 107 (442)
T ss_pred chhhccCCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCC
Confidence 344555677889999999999999998877665433100 00 0000001111222222221
Q ss_pred -----------------------CCCEEEeChHHHHHHHhc------CCCCCCCccEEEEechhhhc--ccCChHHHHHH
Q psy9399 148 -----------------------NPEILLATPGRLIDHMNS------GKINFSHLQILVLDEADRML--DMGFINDIEKI 196 (453)
Q Consensus 148 -----------------------~~~Ilv~T~~~l~~~l~~------~~~~~~~~~~iIiDE~h~~~--~~~~~~~~~~~ 196 (453)
.+||+|++|=-|...+.. ....++.+.++|+|.+|.+. +|.+...+...
T Consensus 108 ~DD~FrlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~ 187 (442)
T PF06862_consen 108 NDDCFRLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEH 187 (442)
T ss_pred ccceEEEeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHH
Confidence 379999999999887764 22347889999999999766 55555555555
Q ss_pred HhhCCC---------------------CccEEEEEeecChHHHHHHHhhcCCCe-EEEecc-------cccccccceEEE
Q psy9399 197 VDATPV---------------------TRQTMLFSATLDGIVGNMAENITKDPL-ILKVNS-------IEKKQKNITQSI 247 (453)
Q Consensus 197 ~~~~~~---------------------~~~~i~~SAT~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~ 247 (453)
+...|. -+|+|++|+...+.+..+....+.+.. .+.... .......+.|.+
T Consensus 188 lN~~P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F 267 (442)
T PF06862_consen 188 LNLQPKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVF 267 (442)
T ss_pred hccCCCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEE
Confidence 555443 249999999999988888877555432 222211 122334566777
Q ss_pred EEEcchhhHH-----------HHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHh
Q psy9399 248 LFVDDILHKN-----------RLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLR 316 (453)
Q Consensus 248 ~~~~~~~~~~-----------~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 316 (453)
..++...... .++..+.+....+++|||++|.-+--++-++|++.++..+.+|--.+..+-.+.-..|.
T Consensus 268 ~r~~~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~ 347 (442)
T PF06862_consen 268 QRFDCSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFF 347 (442)
T ss_pred EEecCCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHH
Confidence 6654332111 23344443455679999999999999999999999999999999999999999999999
Q ss_pred cCCccEEEEeCCc--ccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCC------CccEEEEeChhhHHHHHHH
Q psy9399 317 RGRIKILVATDVA--ARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGR------NGFAVSLVNHAERMNIKKI 384 (453)
Q Consensus 317 ~g~~~vLv~T~~~--~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~------~g~~~~~~~~~~~~~~~~~ 384 (453)
+|+.++|+.|.-+ -+-..+.++++||++.+|..+.-|...++-.+.... ...|.++++.-|...+++|
T Consensus 348 ~G~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 348 HGRKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred cCCceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 9999999999543 356778899999999999999988887766555433 4788899998887766654
No 156
>KOG1002|consensus
Probab=99.54 E-value=3.1e-12 Score=118.70 Aligned_cols=111 Identities=22% Similarity=0.294 Sum_probs=95.6
Q ss_pred CCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCC-ccE-EEEeCCcccCCCCCCCcEEEEc
Q psy9399 267 KRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGR-IKI-LVATDVAARGIDVPAITHVFNY 344 (453)
Q Consensus 267 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~v-Lv~T~~~~~Gvdi~~~~~Vi~~ 344 (453)
...-+.+||.......+.+.-.|.+.|+.|.-+.|+|++..|...++.|.+.. +.| ||+-.+.+..+|+...++|+.+
T Consensus 636 d~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmm 715 (791)
T KOG1002|consen 636 DRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMM 715 (791)
T ss_pred ccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEee
Confidence 34457899999999999999999999999999999999999999999999863 444 5566888899999999999999
Q ss_pred CCCCChhHHHHHhhhccCCCCC--ccEEEEeChhh
Q psy9399 345 DLPKFPEDYVHRIGRTGRAGRN--GFAVSLVNHAE 377 (453)
Q Consensus 345 ~~~~~~~~~~Q~~GR~~R~g~~--g~~~~~~~~~~ 377 (453)
|+-|++.--.|...|.+|.|+. -.++.|+-+..
T Consensus 716 DPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEns 750 (791)
T KOG1002|consen 716 DPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENS 750 (791)
T ss_pred cccccHHHHhhhhhhHHhhcCccceeEEEeehhcc
Confidence 9999999999999999999876 56677776543
No 157
>KOG0388|consensus
Probab=99.54 E-value=2.5e-13 Score=130.71 Aligned_cols=117 Identities=22% Similarity=0.318 Sum_probs=102.0
Q ss_pred HHHHHHHhh--CCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccE-EEEeCCcccCCC
Q psy9399 258 RLLDYLLRD--KRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKI-LVATDVAARGID 334 (453)
Q Consensus 258 ~~~~~l~~~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v-Lv~T~~~~~Gvd 334 (453)
..++.++.. ..++++|+|+...+..+.+.++|.-.++....+.|.....+|..++.+|...++-| |++|.+.+-|||
T Consensus 1031 ~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGIN 1110 (1185)
T KOG0388|consen 1031 VVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGIN 1110 (1185)
T ss_pred eeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCccccc
Confidence 345555443 56689999999999999999999999999999999999999999999999877664 689999999999
Q ss_pred CCCCcEEEEcCCCCChhHHHHHhhhccCCCCCcc--EEEEeC
Q psy9399 335 VPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGF--AVSLVN 374 (453)
Q Consensus 335 i~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~--~~~~~~ 374 (453)
+...+.||+||..|++..-.|.+.||+|.|+... +|.++.
T Consensus 1111 LTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~ 1152 (1185)
T KOG0388|consen 1111 LTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLIT 1152 (1185)
T ss_pred ccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecc
Confidence 9999999999999999999999999999998754 444444
No 158
>KOG0391|consensus
Probab=99.50 E-value=4.1e-12 Score=128.27 Aligned_cols=122 Identities=22% Similarity=0.328 Sum_probs=104.2
Q ss_pred HHHHHHHHHhh--CCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCC--ccEEEEeCCccc
Q psy9399 256 KNRLLDYLLRD--KRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGR--IKILVATDVAAR 331 (453)
Q Consensus 256 ~~~~~~~l~~~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vLv~T~~~~~ 331 (453)
+...+..|++. ..++++|||+...+..+.+..+|+-+|+....+.|....++|....++|..+. .+.|++|...+.
T Consensus 1261 KLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggv 1340 (1958)
T KOG0391|consen 1261 KLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGV 1340 (1958)
T ss_pred hHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcc
Confidence 33444444443 45689999999999999999999999999999999999999999999999764 457889999999
Q ss_pred CCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCC--ccEEEEeChhh
Q psy9399 332 GIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRN--GFAVSLVNHAE 377 (453)
Q Consensus 332 Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~--g~~~~~~~~~~ 377 (453)
|||+.+.+.||+||..|++..-.|.--||.|.|+. -..|.++++..
T Consensus 1341 GiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~T 1388 (1958)
T KOG0391|consen 1341 GINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERT 1388 (1958)
T ss_pred ccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccch
Confidence 99999999999999999999999999999998866 55677777653
No 159
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.47 E-value=1e-11 Score=123.85 Aligned_cols=288 Identities=15% Similarity=0.139 Sum_probs=176.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy9399 41 LIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120 (453)
Q Consensus 41 ~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 120 (453)
.+|.+|+|||||.+..-++...+.. ...+++++..+++|+.++.+.++..
T Consensus 52 ~vVRSpMGTGKTtaLi~wLk~~l~~------------------------------~~~~VLvVShRrSL~~sL~~rf~~~ 101 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRWLKDALKN------------------------------PDKSVLVVSHRRSLTKSLAERFKKA 101 (824)
T ss_pred EEEECCCCCCcHHHHHHHHHHhccC------------------------------CCCeEEEEEhHHHHHHHHHHHHhhc
Confidence 8899999999998665555444322 3558999999999999999988865
Q ss_pred hcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEechhhhcccCC-------hHHH
Q psy9399 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGF-------INDI 193 (453)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h~~~~~~~-------~~~~ 193 (453)
+-. ++....-.++.. ......+-+++..++|.+... ..+.++++||+||+-..+..-+ ...+
T Consensus 102 ~l~--gFv~Y~d~~~~~------i~~~~~~rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~ 170 (824)
T PF02399_consen 102 GLS--GFVNYLDSDDYI------IDGRPYDRLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVD 170 (824)
T ss_pred CCC--cceeeecccccc------ccccccCeEEEEehhhhhccc---ccccccCEEEEehHHHHHHHHhHHHHhhHHHHH
Confidence 311 111111111100 001134677777787766432 1357799999999987664322 2233
Q ss_pred HHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEec-ccccccccceEEEEEE--c-------------------
Q psy9399 194 EKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVN-SIEKKQKNITQSILFV--D------------------- 251 (453)
Q Consensus 194 ~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~------------------- 251 (453)
..+...+.....+|++.|++....-++.+.+.+...+..+. ........-+...... .
T Consensus 171 ~~L~~lI~~ak~VI~~DA~ln~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 250 (824)
T PF02399_consen 171 NLLKELIRNAKTVIVMDADLNDQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSP 250 (824)
T ss_pred HHHHHHHHhCCeEEEecCCCCHHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCC
Confidence 33445566777899999999988888887765543322221 1100000000000000 0
Q ss_pred -------------chhhHHHHHHHHHhh-CCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhc
Q psy9399 252 -------------DILHKNRLLDYLLRD-KRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRR 317 (453)
Q Consensus 252 -------------~~~~~~~~~~~l~~~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 317 (453)
...........|... ..+.++.||++|...++.+++........+..+++.-+..+ + +.|
T Consensus 251 ~~~~~~~~~~~~~~~~~~~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d---v-~~W-- 324 (824)
T PF02399_consen 251 TPKHSPDPTATAAISNDETTFFSELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED---V-ESW-- 324 (824)
T ss_pred CcCCCCccccccccccchhhHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc---c-ccc--
Confidence 000111222233332 45567889999999999999999988888998888766552 2 223
Q ss_pred CCccEEEEeCCcccCCCCCCCc--EEEEc--CCC--CChhHHHHHhhhccCCCCCccEEEEeChh
Q psy9399 318 GRIKILVATDVAARGIDVPAIT--HVFNY--DLP--KFPEDYVHRIGRTGRAGRNGFAVSLVNHA 376 (453)
Q Consensus 318 g~~~vLv~T~~~~~Gvdi~~~~--~Vi~~--~~~--~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 376 (453)
++.+|++-|+++..|+++...+ -++-+ ... -++.+..|++||+-.. .....+++++..
T Consensus 325 ~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~~ 388 (824)
T PF02399_consen 325 KKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDAS 388 (824)
T ss_pred cceeEEEEeceEEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEecc
Confidence 4689999999999999996433 23333 111 2456789999998544 445666666653
No 160
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.41 E-value=4.5e-13 Score=105.81 Aligned_cols=136 Identities=15% Similarity=0.168 Sum_probs=82.3
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHH
Q psy9399 37 SGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~ 116 (453)
+|+-.++-..+|+|||.-.+.-++..... .+.++|||.|||.++..+.+.
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~------------------------------~~~rvLvL~PTRvva~em~~a 52 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIK------------------------------RRLRVLVLAPTRVVAEEMYEA 52 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHH------------------------------TT--EEEEESSHHHHHHHHHH
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHH------------------------------ccCeEEEecccHHHHHHHHHH
Confidence 34457899999999998766666655444 256999999999999999988
Q ss_pred HHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEechhhhcccC--ChHHHH
Q psy9399 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMG--FINDIE 194 (453)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h~~~~~~--~~~~~~ 194 (453)
++... +.+....-+ .....+.-|-++|+..+..++.+ .....++++||+||+|..-... +...+.
T Consensus 53 L~~~~-----~~~~t~~~~-------~~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~ 119 (148)
T PF07652_consen 53 LKGLP-----VRFHTNARM-------RTHFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLR 119 (148)
T ss_dssp TTTSS-----EEEESTTSS-----------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHH
T ss_pred HhcCC-----cccCceeee-------ccccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHH
Confidence 86532 222211110 01234567899999999887766 4457899999999999643222 111222
Q ss_pred HHHhhCCCCccEEEEEeecChHH
Q psy9399 195 KIVDATPVTRQTMLFSATLDGIV 217 (453)
Q Consensus 195 ~~~~~~~~~~~~i~~SAT~~~~~ 217 (453)
... .. ....+|++|||||...
T Consensus 120 ~~~-~~-g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 120 ELA-ES-GEAKVIFMTATPPGSE 140 (148)
T ss_dssp HHH-HT-TS-EEEEEESS-TT--
T ss_pred Hhh-hc-cCeeEEEEeCCCCCCC
Confidence 221 22 2346999999998654
No 161
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.36 E-value=2.6e-10 Score=120.57 Aligned_cols=312 Identities=15% Similarity=0.189 Sum_probs=174.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATE 118 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 118 (453)
+..+|+=-||||||++.+..+.. +.. ....+++++|+-++.|-.|+.+.+.
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~-l~~----------------------------~~~~~~v~fvvDR~dLd~Q~~~~f~ 324 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARL-LLE----------------------------LPKNPKVLFVVDRKDLDDQTSDEFQ 324 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHH-HHh----------------------------ccCCCeEEEEechHHHHHHHHHHHH
Confidence 34899999999999975544433 333 2346799999999999999999999
Q ss_pred HHhcccCCeeEEEEECCCchHHHHHHhcCC-CCEEEeChHHHHHHHhcCC--CCCCCccEEEEechhhhcccCChHHHHH
Q psy9399 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRN-PEILLATPGRLIDHMNSGK--INFSHLQILVLDEADRMLDMGFINDIEK 195 (453)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Ilv~T~~~l~~~l~~~~--~~~~~~~~iIiDE~h~~~~~~~~~~~~~ 195 (453)
.+........ ...+.....+.+... ..|+|||.+.|-....... ..-++-=++|+||||+-- ++..-..
T Consensus 325 ~~~~~~~~~~-----~~~s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ---~G~~~~~ 396 (962)
T COG0610 325 SFGKVAFNDP-----KAESTSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ---YGELAKL 396 (962)
T ss_pred HHHHhhhhcc-----cccCHHHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc---ccHHHHH
Confidence 9875433111 233333333444433 4899999999977765541 112333479999999743 3444444
Q ss_pred HHhhCCCCccEEEEEeecChHHHHH-HHhhcCCCeEEEecccccccccc-eEEEEEE-------cchh------------
Q psy9399 196 IVDATPVTRQTMLFSATLDGIVGNM-AENITKDPLILKVNSIEKKQKNI-TQSILFV-------DDIL------------ 254 (453)
Q Consensus 196 ~~~~~~~~~~~i~~SAT~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~~~------------ 254 (453)
+...+++ ...+++|+||-..-... .....+................+ ...+... ....
T Consensus 397 ~~~~~~~-a~~~gFTGTPi~~~d~~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (962)
T COG0610 397 LKKALKK-AIFIGFTGTPIFKEDKDTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEE 475 (962)
T ss_pred HHHHhcc-ceEEEeeCCccccccccchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhh
Confidence 4555554 57999999984221111 11122222211111100000000 0000000 0000
Q ss_pred ------------------------hHH----HHHHHHHh-hCCCCcEEEEeccchhHHHHHHHHhhCCC---------c-
Q psy9399 255 ------------------------HKN----RLLDYLLR-DKRVGQAVVFTATKRDADIIADRLNISGF---------L- 295 (453)
Q Consensus 255 ------------------------~~~----~~~~~l~~-~~~~~~~lvf~~~~~~~~~l~~~L~~~~~---------~- 295 (453)
... .....+.. ...+.++++.+.++..+..+++....... .
T Consensus 476 ~~~~~~~~~~k~~~~~~~~~~~~~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (962)
T COG0610 476 ITEDILEKIKKKTKNLEFLAMLAVRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGA 555 (962)
T ss_pred hHHHHHHHHHHHHhhhhHHhcchHHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhH
Confidence 000 11111222 23456889999888855555544322100 0
Q ss_pred eeec-------------CCCCCHHHHHHHHHH--HhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhc
Q psy9399 296 AAPL-------------HGDLHQNARNRTLEN--LRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360 (453)
Q Consensus 296 ~~~~-------------~~~~~~~~r~~~~~~--f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~ 360 (453)
+..+ |.. ....+...... ..+...++||.++++-.|+|-|.++.+. +|-|.-....+|.+-|+
T Consensus 556 i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRt 633 (962)
T COG0610 556 IKDYNTEFETDFDKKQSHAK-LKDEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRT 633 (962)
T ss_pred HHHHHhhcccchhhhhhhHH-HHHHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHh
Confidence 0000 111 11223334444 3456889999999999999999888775 57778888999999999
Q ss_pred cCC--C-CC-ccEEEEeChhhHHHHHHHHHHhhcC
Q psy9399 361 GRA--G-RN-GFAVSLVNHAERMNIKKIERFTKQQ 391 (453)
Q Consensus 361 ~R~--g-~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 391 (453)
.|. + ++ |.++-+.. .......++..|.+..
T Consensus 634 NR~~~~~K~~G~IVDf~g-l~e~l~~Al~~Y~~~~ 667 (962)
T COG0610 634 NRVFPGKKKFGLIVDFRG-LKEALKKALKLYSNEG 667 (962)
T ss_pred ccCCCCCCCCcEEEECcc-hHHHHHHHHHHhhccc
Confidence 997 3 23 54555544 3334444555555444
No 162
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.32 E-value=3e-10 Score=122.26 Aligned_cols=117 Identities=19% Similarity=0.236 Sum_probs=99.3
Q ss_pred HHHHHHHHH---hhCCCC--cEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcC--CccEEEEeCC
Q psy9399 256 KNRLLDYLL---RDKRVG--QAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRG--RIKILVATDV 328 (453)
Q Consensus 256 ~~~~~~~l~---~~~~~~--~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~vLv~T~~ 328 (453)
+...+..++ ....+. ++++|++.......+...|...++....++|.++...|...++.|.++ ..-+++++.+
T Consensus 693 k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~ka 772 (866)
T COG0553 693 KLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKA 772 (866)
T ss_pred HHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecc
Confidence 344444444 223445 899999999999999999999988899999999999999999999986 3446677799
Q ss_pred cccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEE
Q psy9399 329 AARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSL 372 (453)
Q Consensus 329 ~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~ 372 (453)
.+.|+|+...++||++|+.+++....|...|+.|.|+...+.++
T Consensus 773 gg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~ 816 (866)
T COG0553 773 GGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVY 816 (866)
T ss_pred cccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEE
Confidence 99999999999999999999999999999999999988655444
No 163
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.32 E-value=2.1e-11 Score=114.08 Aligned_cols=145 Identities=17% Similarity=0.137 Sum_probs=84.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATE 118 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 118 (453)
+.++++.++|+|||...+..+........ ......+||+||. .+..||..++.
T Consensus 26 ~g~lL~de~GlGKT~~~i~~~~~l~~~~~--------------------------~~~~~~~LIv~P~-~l~~~W~~E~~ 78 (299)
T PF00176_consen 26 RGGLLADEMGLGKTITAIALISYLKNEFP--------------------------QRGEKKTLIVVPS-SLLSQWKEEIE 78 (299)
T ss_dssp -EEEE---TTSSHHHHHHHHHHHHHHCCT--------------------------TSS-S-EEEEE-T-TTHHHHHHHHH
T ss_pred CCEEEEECCCCCchhhhhhhhhhhhhccc--------------------------cccccceeEeecc-chhhhhhhhhc
Confidence 45999999999999876666553322211 1112359999999 88899999999
Q ss_pred HHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhc---CCCCCCCccEEEEechhhhcccCChHHHHH
Q psy9399 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNS---GKINFSHLQILVLDEADRMLDMGFINDIEK 195 (453)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~---~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~ 195 (453)
++..... +++....+...............+++|+|++.+...... ..+...++++||+||+|.+.+.. .....
T Consensus 79 ~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~--s~~~~ 155 (299)
T PF00176_consen 79 KWFDPDS-LRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKD--SKRYK 155 (299)
T ss_dssp HHSGT-T-S-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTT--SHHHH
T ss_pred ccccccc-ccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEeccccccccc--ccccc
Confidence 9875333 566665555522222233344678999999999811000 00112348999999999985443 22233
Q ss_pred HHhhCCCCccEEEEEeecC
Q psy9399 196 IVDATPVTRQTMLFSATLD 214 (453)
Q Consensus 196 ~~~~~~~~~~~i~~SAT~~ 214 (453)
.+..+. ....+++||||-
T Consensus 156 ~l~~l~-~~~~~lLSgTP~ 173 (299)
T PF00176_consen 156 ALRKLR-ARYRWLLSGTPI 173 (299)
T ss_dssp HHHCCC-ECEEEEE-SS-S
T ss_pred cccccc-cceEEeeccccc
Confidence 333344 567899999974
No 164
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.31 E-value=1.1e-10 Score=117.34 Aligned_cols=318 Identities=18% Similarity=0.187 Sum_probs=189.2
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCc
Q psy9399 19 VGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP 98 (453)
Q Consensus 19 ~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
+|. ++..+| .+-.+.-...-+..+.||-|||+++.+|+.-.... +.
T Consensus 77 lg~-~~~dVQ--liG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~-------------------------------gk 122 (822)
T COG0653 77 LGM-RHFDVQ--LLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA-------------------------------GK 122 (822)
T ss_pred cCC-ChhhHH--HhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC-------------------------------CC
Confidence 344 244444 44445555668999999999999999998665443 44
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHH-HHHHhcCC------CCCC
Q psy9399 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRL-IDHMNSGK------INFS 171 (453)
Q Consensus 99 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~~------~~~~ 171 (453)
.+.+++..--|+.--+++...+..+.+ +.+.....+....++...+ .+||..+|.+.| +++++.+. ...+
T Consensus 123 gVhvVTvNdYLA~RDae~m~~l~~~LG-lsvG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr 199 (822)
T COG0653 123 GVHVVTVNDYLARRDAEWMGPLYEFLG-LSVGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQR 199 (822)
T ss_pred CcEEeeehHHhhhhCHHHHHHHHHHcC-CceeeccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhc
Confidence 788888888888766666666655554 8888877777655554443 579999998876 44443321 1234
Q ss_pred CccEEEEechhhhc-cc---------------CChHHHHHHHhhCCCCc-------------------------------
Q psy9399 172 HLQILVLDEADRML-DM---------------GFINDIEKIVDATPVTR------------------------------- 204 (453)
Q Consensus 172 ~~~~iIiDE~h~~~-~~---------------~~~~~~~~~~~~~~~~~------------------------------- 204 (453)
...+.|+||++.++ +. ..+..+..+...+....
T Consensus 200 ~~~faIvDEvDSILIDEARtPLiISG~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly 279 (822)
T COG0653 200 GLNFAIVDEVDSILIDEARTPLIISGPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLY 279 (822)
T ss_pred cCCeEEEcchhheeeeccccceeeecccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCccccc
Confidence 57889999998643 11 01222222221111000
Q ss_pred --------------------------------------------------------------------------------
Q psy9399 205 -------------------------------------------------------------------------------- 204 (453)
Q Consensus 205 -------------------------------------------------------------------------------- 204 (453)
T Consensus 280 ~~en~~~~h~~~~alrA~~l~~~D~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn 359 (822)
T COG0653 280 DLENVNLVHHLNQALRAHILFFRDVDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQN 359 (822)
T ss_pred chhhHHHHhhHHHHHHHHHHhhcCCeeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHH
Confidence
Q ss_pred ------cEEEEEeecChHHHHHHHhhcCCCeEEEecccccccccceEEEEEEcch-hhHHHHHHHHHh-hCCCCcEEEEe
Q psy9399 205 ------QTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDI-LHKNRLLDYLLR-DKRVGQAVVFT 276 (453)
Q Consensus 205 ------~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~-~~~~~~~lvf~ 276 (453)
.+.+||+|.......+...+..+-..+.....- .........+.+. .....++..+.. +..+.|+||-+
T Consensus 360 ~fR~y~kl~gmTGTa~te~~EF~~iY~l~vv~iPTnrp~---~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT 436 (822)
T COG0653 360 LFRLYPKLAGMTGTADTEEEEFDVIYGLDVVVIPTNRPI---IRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGT 436 (822)
T ss_pred HHhhhhhhcCCCCcchhhhhhhhhccCCceeeccCCCcc---cCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcC
Confidence 122222222221122222111111111111100 0111111112222 222344444444 45678999999
Q ss_pred ccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCc-----------EEEEcC
Q psy9399 277 ATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAIT-----------HVFNYD 345 (453)
Q Consensus 277 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~-----------~Vi~~~ 345 (453)
.+.+..+.+.+.|.+.|++..++..+-...+-..+...-+.| .|-|+|+++++|-|+.--. +||-..
T Consensus 437 ~sie~SE~ls~~L~~~~i~h~VLNAk~h~~EA~Iia~AG~~g--aVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTE 514 (822)
T COG0653 437 VSIEKSELLSKLLRKAGIPHNVLNAKNHAREAEIIAQAGQPG--AVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTE 514 (822)
T ss_pred cceecchhHHHHHHhcCCCceeeccccHHHHHHHHhhcCCCC--ccccccccccCCcccccCCCHHHHHHhCCcEEEecc
Confidence 999999999999999999988888887655444444433333 4789999999999985211 344444
Q ss_pred CCCChhHHHHHhhhccCCCCCccEEEEeChhhH
Q psy9399 346 LPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAER 378 (453)
Q Consensus 346 ~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 378 (453)
...|-.--.|..||+||.|.+|..-.+++-.|.
T Consensus 515 RhESRRIDnQLRGRsGRQGDpG~S~F~lSleD~ 547 (822)
T COG0653 515 RHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDD 547 (822)
T ss_pred cchhhHHHHHhhcccccCCCcchhhhhhhhHHH
Confidence 444444445999999999999988877776654
No 165
>KOG1015|consensus
Probab=99.27 E-value=1.4e-10 Score=115.43 Aligned_cols=107 Identities=21% Similarity=0.219 Sum_probs=92.2
Q ss_pred CCCCcEEEEeccchhHHHHHHHHhh----------------------CCCceeecCCCCCHHHHHHHHHHHhcC----Cc
Q psy9399 267 KRVGQAVVFTATKRDADIIADRLNI----------------------SGFLAAPLHGDLHQNARNRTLENLRRG----RI 320 (453)
Q Consensus 267 ~~~~~~lvf~~~~~~~~~l~~~L~~----------------------~~~~~~~~~~~~~~~~r~~~~~~f~~g----~~ 320 (453)
.-+.+.|||..+....+.+..+|.- .|...+.+.|......|.++.+.|.+- ..
T Consensus 1140 eIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaR 1219 (1567)
T KOG1015|consen 1140 EIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRAR 1219 (1567)
T ss_pred HhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeE
Confidence 4467999999999999988888842 234577889999999999999999863 12
Q ss_pred cEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEe
Q psy9399 321 KILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLV 373 (453)
Q Consensus 321 ~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~ 373 (453)
..||+|.+.+-|+|+-.++.||+||..|++.--.|.+=|+-|.|+...||++-
T Consensus 1220 l~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYR 1272 (1567)
T KOG1015|consen 1220 LFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYR 1272 (1567)
T ss_pred EEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehh
Confidence 38999999999999999999999999999999999999999999988777663
No 166
>KOG2340|consensus
Probab=99.27 E-value=2.5e-10 Score=107.14 Aligned_cols=359 Identities=18% Similarity=0.221 Sum_probs=216.1
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEE-EcCCCchH--HHHHHHHHHHhhhhcCCcchhhhhccccc-ccc--chhhhhhcccC
Q psy9399 21 YTKPTGVQEQAIPAAISGRDLIV-SSQTGSGK--TAAFMLPALHKFASSKNKIPVMKKNLNQN-NNK--IYTHKERLRFK 94 (453)
Q Consensus 21 ~~~~~~~Q~~~~~~~~~~~~~lv-~a~TGsGK--T~~~l~~~~~~l~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~ 94 (453)
-..+++.|.+++....+.++++. ....+.|+ +.+|.+-++.++.+.+. ..-+|+.+. +.+ +-+...-.+..
T Consensus 214 s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~---~IL~Nn~r~~Sqk~g~~~~~~frDQG 290 (698)
T KOG2340|consen 214 SEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRD---LILGNNRRLASQKEGENPDESFRDQG 290 (698)
T ss_pred cCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHH---HHhcchHhhhhhhcCCCCchhhhhcC
Confidence 34689999999999999888654 44445565 44577777777766432 222222221 111 11122335556
Q ss_pred CCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeE--------EEEECCCc--------hHHHH----------------
Q psy9399 95 PAQPRMLVLTPTRELALQVTAATERYGLYMKKIKA--------ISILGGMP--------YLRQM---------------- 142 (453)
Q Consensus 95 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~--------~~~~~~~~--------~~~~~---------------- 142 (453)
...++|||+||+++.|..+.+.+..+......-+. ..-++|.. .++..
T Consensus 291 ~tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl 370 (698)
T KOG2340|consen 291 FTRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGL 370 (698)
T ss_pred CCCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhH
Confidence 67889999999999999999988887332221010 11111100 01111
Q ss_pred ------HHh---cCCCCEEEeChHHHHHHHhcCC------CCCCCccEEEEechhhhcccCChHHHHHHHh---hCCCC-
Q psy9399 143 ------QLL---SRNPEILLATPGRLIDHMNSGK------INFSHLQILVLDEADRMLDMGFINDIEKIVD---ATPVT- 203 (453)
Q Consensus 143 ------~~~---~~~~~Ilv~T~~~l~~~l~~~~------~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~---~~~~~- 203 (453)
-.+ ....||+||+|--|...+.+.. -.++.+.++|+|-+|.++...| ..+..++. .+|..
T Consensus 371 ~ftkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNw-Ehl~~ifdHLn~~P~k~ 449 (698)
T KOG2340|consen 371 AFTKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNW-EHLLHIFDHLNLQPSKQ 449 (698)
T ss_pred HHHHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhH-HHHHHHHHHhhcCcccc
Confidence 111 1247999999999888776322 2367789999999998774332 22233333 33322
Q ss_pred --------------------ccEEEEEeecChHHHHHHHhhcCCCe-EEEecccccc------cccceEEEEE--Ecch-
Q psy9399 204 --------------------RQTMLFSATLDGIVGNMAENITKDPL-ILKVNSIEKK------QKNITQSILF--VDDI- 253 (453)
Q Consensus 204 --------------------~~~i~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~--~~~~- 253 (453)
+|++++|+-..+.+..+....+.+.. .+........ .-.+.|.+.. +.+.
T Consensus 450 h~~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~ 529 (698)
T KOG2340|consen 450 HDVDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSII 529 (698)
T ss_pred cCCChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcc
Confidence 37888888777777777766665432 1221111100 0111111111 1111
Q ss_pred ----hhHHHHHHHHHh---hCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEe
Q psy9399 254 ----LHKNRLLDYLLR---DKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVAT 326 (453)
Q Consensus 254 ----~~~~~~~~~l~~---~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T 326 (453)
.+-.-.+..++- ......+||+.++.-+--++-.++++..+....+|--.+...-.+.-+.|..|...||+-|
T Consensus 530 ~~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyT 609 (698)
T KOG2340|consen 530 ETPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYT 609 (698)
T ss_pred cCchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEe
Confidence 111111222211 1223578999999999999999999988877777776667777778888999999999999
Q ss_pred CC--cccCCCCCCCcEEEEcCCCCChhHH---HHHhhhccCCCCC----ccEEEEeChhhHHHHHH
Q psy9399 327 DV--AARGIDVPAITHVFNYDLPKFPEDY---VHRIGRTGRAGRN----GFAVSLVNHAERMNIKK 383 (453)
Q Consensus 327 ~~--~~~Gvdi~~~~~Vi~~~~~~~~~~~---~Q~~GR~~R~g~~----g~~~~~~~~~~~~~~~~ 383 (453)
.- .-+-.++.++..||+|.+|..+.-| +.+.+|+.-.|+. -.|.++++..|.-.+..
T Consensus 610 ER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ 675 (698)
T KOG2340|consen 610 ERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLEN 675 (698)
T ss_pred hhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHH
Confidence 54 3467889999999999999887755 5667776544421 45777777776544433
No 167
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.25 E-value=1.1e-10 Score=107.26 Aligned_cols=76 Identities=20% Similarity=0.224 Sum_probs=54.0
Q ss_pred CCCCCCcHHHHHHHHH----HhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccC
Q psy9399 19 VGYTKPTGVQEQAIPA----AISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFK 94 (453)
Q Consensus 19 ~~~~~~~~~Q~~~~~~----~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (453)
|.| .+++.|.+.+.. +.+++++++.||||+|||++++.|++..+......
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~------------------------- 58 (289)
T smart00489 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER------------------------- 58 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-------------------------
Confidence 455 479999995555 45678899999999999999999998766542210
Q ss_pred CCCceEEEEcCcHHHHHHHHHHHHHH
Q psy9399 95 PAQPRMLVLTPTRELALQVTAATERY 120 (453)
Q Consensus 95 ~~~~~~lil~P~~~L~~q~~~~~~~~ 120 (453)
..+.+++|+++|.++..|....+++.
T Consensus 59 ~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 59 IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred ccccceeEEeccHHHHHHHHHHHHhc
Confidence 01236777777777777766555543
No 168
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.25 E-value=1.1e-10 Score=107.26 Aligned_cols=76 Identities=20% Similarity=0.224 Sum_probs=54.0
Q ss_pred CCCCCCcHHHHHHHHH----HhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccC
Q psy9399 19 VGYTKPTGVQEQAIPA----AISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFK 94 (453)
Q Consensus 19 ~~~~~~~~~Q~~~~~~----~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (453)
|.| .+++.|.+.+.. +.+++++++.||||+|||++++.|++..+......
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~------------------------- 58 (289)
T smart00488 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER------------------------- 58 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-------------------------
Confidence 455 479999995555 45678899999999999999999998766542210
Q ss_pred CCCceEEEEcCcHHHHHHHHHHHHHH
Q psy9399 95 PAQPRMLVLTPTRELALQVTAATERY 120 (453)
Q Consensus 95 ~~~~~~lil~P~~~L~~q~~~~~~~~ 120 (453)
..+.+++|+++|.++..|....+++.
T Consensus 59 ~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 59 IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred ccccceeEEeccHHHHHHHHHHHHhc
Confidence 01236777777777777766555543
No 169
>KOG0921|consensus
Probab=99.01 E-value=2.7e-09 Score=106.04 Aligned_cols=312 Identities=19% Similarity=0.231 Sum_probs=183.6
Q ss_pred HHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCc
Q psy9399 27 VQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPT 106 (453)
Q Consensus 27 ~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~ 106 (453)
+-++.+.++...+-+++.+.||+|||.-+...+++.+..... .....+++.-|+
T Consensus 382 ~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~--------------------------g~~~na~v~qpr 435 (1282)
T KOG0921|consen 382 YRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSN--------------------------GASFNAVVSQPR 435 (1282)
T ss_pred HHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccc--------------------------cccccceecccc
Confidence 334556666666679999999999999999889888776432 123367888898
Q ss_pred HHHHHHHHHHHHHHhc-ccCCeeEEEEECCCchHHHHHHhc-CCCCEEEeChHHHHHHHhcCCCCCCCccEEEEechhhh
Q psy9399 107 RELALQVTAATERYGL-YMKKIKAISILGGMPYLRQMQLLS-RNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRM 184 (453)
Q Consensus 107 ~~L~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h~~ 184 (453)
+..+..+++.+..-.. ... -.++ + ... ...... ..--|..||-+.+++.+... +..+.++|+||.|+.
T Consensus 436 risaisiaerva~er~e~~g-~tvg--y--~vR--f~Sa~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiher 505 (1282)
T KOG0921|consen 436 RISAISLAERVANERGEEVG-ETCG--Y--NVR--FDSATPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHER 505 (1282)
T ss_pred ccchHHHHHHHHHhhHHhhc-cccc--c--ccc--ccccccccccceeeeccchhhhhhhhc---ccccccccchhhhhh
Confidence 8887777766543211 111 0000 0 000 000000 12258999999999888765 367889999999965
Q ss_pred cc-cCChHHHHHHHhhCCCCccEEEEEeecChHH--------------------HHHHHhhcCCCe-EEEeccc------
Q psy9399 185 LD-MGFINDIEKIVDATPVTRQTMLFSATLDGIV--------------------GNMAENITKDPL-ILKVNSI------ 236 (453)
Q Consensus 185 ~~-~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~--------------------~~~~~~~~~~~~-~~~~~~~------ 236 (453)
-- ..|...+.+-+...-...+.+++|||+...+ ..+....+..+. ++.....
T Consensus 506 dv~~dfll~~lr~m~~ty~dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~ 585 (1282)
T KOG0921|consen 506 DVDTDFVLIVLREMISTYRDLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKK 585 (1282)
T ss_pred ccchHHHHHHHHhhhccchhhhhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhh
Confidence 42 2232222222222233345566666653211 111111111000 0000000
Q ss_pred -------ccc--------------cccceEEEEEEcchhhHHHHHHHHHh----hCCCCcEEEEeccchhHHHHHHHHhh
Q psy9399 237 -------EKK--------------QKNITQSILFVDDILHKNRLLDYLLR----DKRVGQAVVFTATKRDADIIADRLNI 291 (453)
Q Consensus 237 -------~~~--------------~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~lvf~~~~~~~~~l~~~L~~ 291 (453)
... ............+......++..++. ..-.+-+++|.+.....-.+..+|..
T Consensus 586 ~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~ 665 (1282)
T KOG0921|consen 586 DDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLE 665 (1282)
T ss_pred cccccCchhhhcccccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhh
Confidence 000 00000000000011112233333333 23446789999999999888888864
Q ss_pred C-------CCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCC-----------------
Q psy9399 292 S-------GFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLP----------------- 347 (453)
Q Consensus 292 ~-------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~----------------- 347 (453)
. ...+...|+.....+..++.+....|..+++++|.+.+..+-+.++..||+.+..
T Consensus 666 ~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atv 745 (1282)
T KOG0921|consen 666 HQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATV 745 (1282)
T ss_pred hhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeee
Confidence 2 3567888999998888999998899999999999999998888776766654422
Q ss_pred -CChhHHHHHhhhccCCCCCccEEEEeCh
Q psy9399 348 -KFPEDYVHRIGRTGRAGRNGFAVSLVNH 375 (453)
Q Consensus 348 -~~~~~~~Q~~GR~~R~g~~g~~~~~~~~ 375 (453)
.+.....|+.||+||. ++|.|..+++.
T Consensus 746 w~sktn~eqr~gr~grv-R~G~~f~lcs~ 773 (1282)
T KOG0921|consen 746 WASKTNLEQRKGRAGRV-RPGFCFHLCSR 773 (1282)
T ss_pred cccccchHhhcccCcee-cccccccccHH
Confidence 2456778999999997 67888877764
No 170
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.95 E-value=4.3e-08 Score=87.79 Aligned_cols=131 Identities=21% Similarity=0.261 Sum_probs=96.0
Q ss_pred hCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCC
Q psy9399 18 KVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ 97 (453)
Q Consensus 18 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (453)
..|+ .|++.|.-+.-.+..|+ ++.+.||-|||++..+++.-.... |
T Consensus 73 ~~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~-------------------------------G 118 (266)
T PF07517_consen 73 TLGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ-------------------------------G 118 (266)
T ss_dssp HTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT-------------------------------S
T ss_pred HcCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh-------------------------------c
Confidence 3677 69999998887776554 999999999999998888766554 5
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHH-HHHHhcCC----C--CC
Q psy9399 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRL-IDHMNSGK----I--NF 170 (453)
Q Consensus 98 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~~----~--~~ 170 (453)
..|-|++.+.-|+..-++++..+....+ +.+....++.........+ .++|+.+|...+ +++++... . ..
T Consensus 119 ~~V~vvT~NdyLA~RD~~~~~~~y~~LG-lsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~ 195 (266)
T PF07517_consen 119 KGVHVVTSNDYLAKRDAEEMRPFYEFLG-LSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQ 195 (266)
T ss_dssp S-EEEEESSHHHHHHHHHHHHHHHHHTT---EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--S
T ss_pred CCcEEEeccHHHhhccHHHHHHHHHHhh-hccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhcc
Confidence 6899999999999988888888877776 9999999888755443333 358999999887 44554321 1 14
Q ss_pred CCccEEEEechhhhc
Q psy9399 171 SHLQILVLDEADRML 185 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~ 185 (453)
+.+.++|+||+|.++
T Consensus 196 r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 196 RGFDFAIVDEVDSIL 210 (266)
T ss_dssp SSSSEEEECTHHHHT
T ss_pred CCCCEEEEeccceEE
Confidence 678999999999765
No 171
>KOG1133|consensus
Probab=98.82 E-value=4.2e-06 Score=81.92 Aligned_cols=112 Identities=22% Similarity=0.228 Sum_probs=75.2
Q ss_pred HHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCc-------eeecCCCCCHHHHHHHHHHHh----cCCccEEEEe--C
Q psy9399 261 DYLLRDKRVGQAVVFTATKRDADIIADRLNISGFL-------AAPLHGDLHQNARNRTLENLR----RGRIKILVAT--D 327 (453)
Q Consensus 261 ~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~-------~~~~~~~~~~~~r~~~~~~f~----~g~~~vLv~T--~ 327 (453)
..+...-+ +.+++|++|.+....+.+.+...|+. ..++-..-+ -..+++.+. .|.-.+|++. .
T Consensus 622 ~nL~~~VP-gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGG 697 (821)
T KOG1133|consen 622 SNLSNAVP-GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGG 697 (821)
T ss_pred HHHHhhCC-CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecc
Confidence 33344444 78999999999999999999876542 122222222 244555554 4555666555 7
Q ss_pred CcccCCCCCC--CcEEEEcCCCCC--------------------------------hhHHHHHhhhccCCCCCccEEEEe
Q psy9399 328 VAARGIDVPA--ITHVFNYDLPKF--------------------------------PEDYVHRIGRTGRAGRNGFAVSLV 373 (453)
Q Consensus 328 ~~~~Gvdi~~--~~~Vi~~~~~~~--------------------------------~~~~~Q~~GR~~R~g~~g~~~~~~ 373 (453)
-+++|||+.+ +++|+-.+.|.. +-...|.+|||.|..++-.+++++
T Consensus 698 KlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~Ll 777 (821)
T KOG1133|consen 698 KLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLL 777 (821)
T ss_pred ccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEe
Confidence 8999999975 667887777642 112349999999998887788777
Q ss_pred Chh
Q psy9399 374 NHA 376 (453)
Q Consensus 374 ~~~ 376 (453)
+.+
T Consensus 778 D~R 780 (821)
T KOG1133|consen 778 DKR 780 (821)
T ss_pred hhh
Confidence 764
No 172
>KOG0952|consensus
Probab=98.80 E-value=1.4e-09 Score=109.99 Aligned_cols=260 Identities=14% Similarity=0.167 Sum_probs=150.6
Q ss_pred CcHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEE
Q psy9399 24 PTGVQEQAIPAAISG-RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLV 102 (453)
Q Consensus 24 ~~~~Q~~~~~~~~~~-~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 102 (453)
+.+.|...+..+..- .++++.+|||+|||.++...+...+.. .++.+++|
T Consensus 928 fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~-----------------------------~p~~kvvy 978 (1230)
T KOG0952|consen 928 FNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSY-----------------------------YPGSKVVY 978 (1230)
T ss_pred cCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhcc-----------------------------CCCccEEE
Confidence 344555554444433 469999999999999999998877665 23569999
Q ss_pred EcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHh--cCCCCCCCccEEEEec
Q psy9399 103 LTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMN--SGKINFSHLQILVLDE 180 (453)
Q Consensus 103 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~--~~~~~~~~~~~iIiDE 180 (453)
+.|-++|+....+......... +++++.+.|.....-. . -..++++|+||++.....+ .....+++++++|+||
T Consensus 979 Iap~kalvker~~Dw~~r~~~~-g~k~ie~tgd~~pd~~--~-v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de 1054 (1230)
T KOG0952|consen 979 IAPDKALVKERSDDWSKRDELP-GIKVIELTGDVTPDVK--A-VREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDE 1054 (1230)
T ss_pred EcCCchhhcccccchhhhcccC-CceeEeccCccCCChh--h-eecCceEEcccccccCccccccchhhhccccceeecc
Confidence 9999999987766655543332 5788888877664421 1 2357899999999977666 3344678999999999
Q ss_pred hhhhcccCChHHHHHHHhh-------CCCCccEEEEEeecChHHHHHHHhhcCCCe-----EEEecccccccccceEEEE
Q psy9399 181 ADRMLDMGFINDIEKIVDA-------TPVTRQTMLFSATLDGIVGNMAENITKDPL-----ILKVNSIEKKQKNITQSIL 248 (453)
Q Consensus 181 ~h~~~~~~~~~~~~~~~~~-------~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 248 (453)
.|.+.+. ++..++.+... .+...+.+++|.-+. ...++..+....+. .+...+.........-..+
T Consensus 1055 ~hllg~~-rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~-na~dla~wl~~~~~~nf~~svrpvp~~~~i~gfp~~~~ 1132 (1230)
T KOG0952|consen 1055 IHLLGED-RGPVLEVIVSRMNYISSQTEEPVRYLGLSTALA-NANDLADWLNIKDMYNFRPSVRPVPLEVHIDGFPGQHY 1132 (1230)
T ss_pred cccccCC-CcceEEEEeeccccCccccCcchhhhhHhhhhh-ccHHHHHHhCCCCcCCCCcccccCCceEeecCCCchhc
Confidence 9976543 33333322222 233345666654332 23444554443332 1111111111111111111
Q ss_pred EEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHH----HHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCc
Q psy9399 249 FVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIA----DRLNISGFLAAPLHGDLHQNARNRTLENLRRGRI 320 (453)
Q Consensus 249 ~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~----~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 320 (453)
.....+........+...++..+++||+.++.....-+ ..+....-+...++- +..+-+.++...++...
T Consensus 1133 cprm~smnkpa~qaik~~sp~~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~--de~e~e~~~~~~~d~~L 1206 (1230)
T KOG0952|consen 1133 CPRMMSMNKPAFQAIKTHSPIKPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLNM--DELELEIIMSKVRDTNL 1206 (1230)
T ss_pred chhhhhcccHHHHHHhcCCCCCceEEEeecccccccchHhHHhhccCCCCchhccCC--CHHHHHHHHHHhcccch
Confidence 11112223345566677788889999999987644333 333222233333433 35555566665555433
No 173
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.80 E-value=2e-08 Score=84.80 Aligned_cols=110 Identities=25% Similarity=0.330 Sum_probs=77.0
Q ss_pred HHhhCCCCcEEEEeccchhHHHHHHHHhhCC----CceeecCCCCCHHHHHHHHHHHhcCCccEEEEeC--CcccCCCCC
Q psy9399 263 LLRDKRVGQAVVFTATKRDADIIADRLNISG----FLAAPLHGDLHQNARNRTLENLRRGRIKILVATD--VAARGIDVP 336 (453)
Q Consensus 263 l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~--~~~~Gvdi~ 336 (453)
+++..+ +++|||++|....+.+.+.+.... +.+..- ...++..+++.|++++..||+++. .+++|+|+|
T Consensus 4 l~~~~~-g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q----~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 4 LISAVP-GGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ----GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp HHHCCS-SEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES----TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--E
T ss_pred HHhcCC-CCEEEEeCCHHHHHHHHHHHHhhcccccceeeec----CcchHHHHHHHHHhccCeEEEEEecccEEEeecCC
Confidence 344343 899999999999999999998753 333222 244678999999999999999998 999999999
Q ss_pred C--CcEEEEcCCCCCh------------------------------hHHHHHhhhccCCCCCccEEEEeChhh
Q psy9399 337 A--ITHVFNYDLPKFP------------------------------EDYVHRIGRTGRAGRNGFAVSLVNHAE 377 (453)
Q Consensus 337 ~--~~~Vi~~~~~~~~------------------------------~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 377 (453)
+ ++.||....|... ....|.+||+.|..++-.++++++.+=
T Consensus 79 ~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R~ 151 (167)
T PF13307_consen 79 GDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSRF 151 (167)
T ss_dssp CESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGGG
T ss_pred CchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCcc
Confidence 6 6679998888521 123499999999988877777887753
No 174
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.77 E-value=1.1e-07 Score=98.45 Aligned_cols=74 Identities=16% Similarity=0.141 Sum_probs=56.1
Q ss_pred CccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCC--CCc-----c---EEEEeChhhHHHHHHHHHHh
Q psy9399 319 RIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAG--RNG-----F---AVSLVNHAERMNIKKIERFT 388 (453)
Q Consensus 319 ~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g--~~g-----~---~~~~~~~~~~~~~~~~~~~~ 388 (453)
..+.|++-+++.+|-|.|++-.++-+....|...-.|.+||..|.. +.| . ..++.+.........++.-+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 6789999999999999999999998888888889999999999962 112 1 22444555666667776655
Q ss_pred hcCC
Q psy9399 389 KQQI 392 (453)
Q Consensus 389 ~~~~ 392 (453)
+...
T Consensus 581 ~~~~ 584 (986)
T PRK15483 581 NSDS 584 (986)
T ss_pred Hhhc
Confidence 5543
No 175
>KOG1016|consensus
Probab=98.64 E-value=7.5e-06 Score=80.96 Aligned_cols=135 Identities=17% Similarity=0.190 Sum_probs=103.7
Q ss_pred CCcEEEEeccchhHHHHHHHHhhCC------------------CceeecCCCCCHHHHHHHHHHHhcC---CccEEEEeC
Q psy9399 269 VGQAVVFTATKRDADIIADRLNISG------------------FLAAPLHGDLHQNARNRTLENLRRG---RIKILVATD 327 (453)
Q Consensus 269 ~~~~lvf~~~~~~~~~l~~~L~~~~------------------~~~~~~~~~~~~~~r~~~~~~f~~g---~~~vLv~T~ 327 (453)
+.++|||.........+.+.|.+.. .....+.|..+..+|++.+.+|.+- ..-+|++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 4688999999999998888886431 2245678888999999999999863 235889999
Q ss_pred CcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHH--HhhcCCCccccCCCCcc
Q psy9399 328 VAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIER--FTKQQIPIEVINGFEPK 403 (453)
Q Consensus 328 ~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 403 (453)
...-|+|+-..+.++.++..|++---.|.+-|+-|-|+...|+++----|..+-+.|.+ .-++.+..+.+.+..|.
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvVDd~np~ 876 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVVDDANPD 876 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchhhhhcccCcc
Confidence 99999999888888889999988888899999999998877777655555544444432 34566777777666653
No 176
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.57 E-value=1.2e-06 Score=78.74 Aligned_cols=154 Identities=16% Similarity=0.168 Sum_probs=102.7
Q ss_pred CcHHHHHHHHHHhc----------CCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhccc
Q psy9399 24 PTGVQEQAIPAAIS----------GRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRF 93 (453)
Q Consensus 24 ~~~~Q~~~~~~~~~----------~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (453)
++..|.+++-.+.+ ...+++.-.||.||-....-.+++.+.++
T Consensus 38 LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G--------------------------- 90 (303)
T PF13872_consen 38 LSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG--------------------------- 90 (303)
T ss_pred ccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC---------------------------
Confidence 78899888766541 23499999999999987777777776652
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCC---CCC
Q psy9399 94 KPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGK---INF 170 (453)
Q Consensus 94 ~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~---~~~ 170 (453)
..+.|.+..+..|.....+.++.++.....+. .+..-.. .....-...|+++|+..|...-..+. ..+
T Consensus 91 ---r~r~vwvS~s~dL~~Da~RDl~DIG~~~i~v~--~l~~~~~----~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl 161 (303)
T PF13872_consen 91 ---RKRAVWVSVSNDLKYDAERDLRDIGADNIPVH--PLNKFKY----GDIIRLKEGVLFSTYSTLISESQSGGKYRSRL 161 (303)
T ss_pred ---CCceEEEECChhhhhHHHHHHHHhCCCcccce--echhhcc----CcCCCCCCCccchhHHHHHhHHhccCCccchH
Confidence 33799999999999999999998875432222 2111000 00011245799999999877653211 111
Q ss_pred ---------CCccEEEEechhhhcccCC--------hHHHHHHHhhCCCCccEEEEEeecC
Q psy9399 171 ---------SHLQILVLDEADRMLDMGF--------INDIEKIVDATPVTRQTMLFSATLD 214 (453)
Q Consensus 171 ---------~~~~~iIiDE~h~~~~~~~--------~~~~~~~~~~~~~~~~~i~~SAT~~ 214 (453)
..=++|||||+|...+..- ...+..+.+.+|.. +++++|||-.
T Consensus 162 ~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~A-RvvY~SATga 221 (303)
T PF13872_consen 162 DQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNA-RVVYASATGA 221 (303)
T ss_pred HHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCC-cEEEeccccc
Confidence 1236999999998776532 23455566677655 4999999953
No 177
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.56 E-value=5.3e-06 Score=83.15 Aligned_cols=71 Identities=18% Similarity=0.248 Sum_probs=55.0
Q ss_pred CCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCC--CCCcc-----------EEEEeChhhHHHHHHH
Q psy9399 318 GRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRA--GRNGF-----------AVSLVNHAERMNIKKI 384 (453)
Q Consensus 318 g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~--g~~g~-----------~~~~~~~~~~~~~~~~ 384 (453)
...+.|.+-.++.+|-|-|+|=.++-+....|..+=.|.+||.-|. .+.|. -.++++..+...++.+
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 4578999999999999999999999999999999999999999996 22232 2345666666666666
Q ss_pred HHHh
Q psy9399 385 ERFT 388 (453)
Q Consensus 385 ~~~~ 388 (453)
++-.
T Consensus 562 qkEI 565 (985)
T COG3587 562 QKEI 565 (985)
T ss_pred HHHH
Confidence 5433
No 178
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.54 E-value=6e-07 Score=77.86 Aligned_cols=123 Identities=18% Similarity=0.290 Sum_probs=71.2
Q ss_pred CCcHHHHHHHHHHhcCC--cEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceE
Q psy9399 23 KPTGVQEQAIPAAISGR--DLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRM 100 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~~~~--~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (453)
++++-|.+++..++..+ -.++.|+.|+|||.+ +..+...+.. .+.++
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~------------------------------~g~~v 49 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA------------------------------AGKRV 49 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH------------------------------TT--E
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh------------------------------CCCeE
Confidence 47899999999997554 388899999999974 4445544443 24589
Q ss_pred EEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCC----CCCCCccEE
Q psy9399 101 LVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGK----INFSHLQIL 176 (453)
Q Consensus 101 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~----~~~~~~~~i 176 (453)
++++||...+..+.+... .. ..|...++....... ..+.+.++|
T Consensus 50 ~~~apT~~Aa~~L~~~~~--------~~------------------------a~Ti~~~l~~~~~~~~~~~~~~~~~~vl 97 (196)
T PF13604_consen 50 IGLAPTNKAAKELREKTG--------IE------------------------AQTIHSFLYRIPNGDDEGRPELPKKDVL 97 (196)
T ss_dssp EEEESSHHHHHHHHHHHT--------S-------------------------EEEHHHHTTEECCEECCSSCC-TSTSEE
T ss_pred EEECCcHHHHHHHHHhhC--------cc------------------------hhhHHHHHhcCCcccccccccCCcccEE
Confidence 999999888877655421 11 222222222111110 014567899
Q ss_pred EEechhhhcccCChHHHHHHHhhCCC-CccEEEEEee
Q psy9399 177 VLDEADRMLDMGFINDIEKIVDATPV-TRQTMLFSAT 212 (453)
Q Consensus 177 IiDE~h~~~~~~~~~~~~~~~~~~~~-~~~~i~~SAT 212 (453)
||||+-++.. ..+..++...+. ..++|++.=+
T Consensus 98 iVDEasmv~~----~~~~~ll~~~~~~~~klilvGD~ 130 (196)
T PF13604_consen 98 IVDEASMVDS----RQLARLLRLAKKSGAKLILVGDP 130 (196)
T ss_dssp EESSGGG-BH----HHHHHHHHHS-T-T-EEEEEE-T
T ss_pred EEecccccCH----HHHHHHHHHHHhcCCEEEEECCc
Confidence 9999998753 345556666655 4455555443
No 179
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.52 E-value=9.5e-06 Score=84.16 Aligned_cols=67 Identities=18% Similarity=0.136 Sum_probs=56.1
Q ss_pred CCCEEEeChHHHHHHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecC
Q psy9399 148 NPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLD 214 (453)
Q Consensus 148 ~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 214 (453)
...|+++||..|...+..+.+++..+..|||||||+.....-...+..++....+..-+.++||+|.
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 3479999999999999999999999999999999998876666666677766666667888998884
No 180
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.52 E-value=1.4e-06 Score=78.16 Aligned_cols=73 Identities=18% Similarity=0.297 Sum_probs=50.0
Q ss_pred CcHHHHHHHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEE
Q psy9399 24 PTGVQEQAIPAAISGRD-LIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLV 102 (453)
Q Consensus 24 ~~~~Q~~~~~~~~~~~~-~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 102 (453)
+++.|.+|+..+++... .+|.||+|+|||.+... ++..+..... ......+.++|+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~-~i~~~~~~~~----------------------~~~~~~~~~il~ 58 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLAS-IIAQLLQRFK----------------------SRSADRGKKILV 58 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHH-HHHHH-----------------------------HCCCSS-EEE
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHH-HHHHhccchh----------------------hhhhhcccccee
Confidence 67899999999999888 99999999999975443 3333311000 000224669999
Q ss_pred EcCcHHHHHHHHHHHHH
Q psy9399 103 LTPTRELALQVTAATER 119 (453)
Q Consensus 103 l~P~~~L~~q~~~~~~~ 119 (453)
++|+..-+.++.+.+.+
T Consensus 59 ~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 59 VSPSNAAVDNILERLKK 75 (236)
T ss_dssp EESSHHHHHHHHHHHHC
T ss_pred ecCCchhHHHHHHHHHh
Confidence 99999999999888777
No 181
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.49 E-value=5.2e-07 Score=77.59 Aligned_cols=146 Identities=16% Similarity=0.226 Sum_probs=73.2
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceE
Q psy9399 21 YTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRM 100 (453)
Q Consensus 21 ~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (453)
+...+..|..++.++.+.+-+++.||.|+|||+.++..+++.+..+. ..++
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~-----------------------------~~ki 52 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGE-----------------------------YDKI 52 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS------------------------------SEE
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCC-----------------------------CcEE
Confidence 44568899999999997777999999999999999999988877532 3488
Q ss_pred EEEcCcHHHHHHH-------HHHHHHHhcccC-CeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCC
Q psy9399 101 LVLTPTRELALQV-------TAATERYGLYMK-KIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSH 172 (453)
Q Consensus 101 lil~P~~~L~~q~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~ 172 (453)
++.-|..+..+.+ .+.+..+..... .+. .+.+..... .+.....|-+.....+.. . .+.
T Consensus 53 ii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~--~~~~~~~~~----~~~~~~~Ie~~~~~~iRG----r--t~~- 119 (205)
T PF02562_consen 53 IITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALE--ELFGKEKLE----ELIQNGKIEIEPLAFIRG----R--TFD- 119 (205)
T ss_dssp EEEE-S--TT----SS---------TTTHHHHHHHT--TTS-TTCHH----HHHHTTSEEEEEGGGGTT--------B--
T ss_pred EEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHH--HHhChHhHH----HHhhcCeEEEEehhhhcC----c--ccc-
Confidence 8888887542221 111111100000 000 000111111 111123455554432211 1 122
Q ss_pred ccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEee
Q psy9399 173 LQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSAT 212 (453)
Q Consensus 173 ~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 212 (453)
-.+||+|||+.+. ...+..++..+..+++++++.-.
T Consensus 120 ~~~iIvDEaQN~t----~~~~k~ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 120 NAFIIVDEAQNLT----PEELKMILTRIGEGSKIIITGDP 155 (205)
T ss_dssp SEEEEE-SGGG------HHHHHHHHTTB-TT-EEEEEE--
T ss_pred ceEEEEecccCCC----HHHHHHHHcccCCCcEEEEecCc
Confidence 3799999999874 45678888888888877776544
No 182
>KOG1131|consensus
Probab=98.44 E-value=0.0002 Score=68.31 Aligned_cols=108 Identities=20% Similarity=0.176 Sum_probs=68.0
Q ss_pred CCcEEEEeccchhHHHHHHHHhhCCCc--e----eecCCCCCHHHHHHHHHHHh----cCCccEE--EEeCCcccCCCCC
Q psy9399 269 VGQAVVFTATKRDADIIADRLNISGFL--A----APLHGDLHQNARNRTLENLR----RGRIKIL--VATDVAARGIDVP 336 (453)
Q Consensus 269 ~~~~lvf~~~~~~~~~l~~~L~~~~~~--~----~~~~~~~~~~~r~~~~~~f~----~g~~~vL--v~T~~~~~Gvdi~ 336 (453)
.+.+++|+.+.-..+.+.......|+- + .++-+.-+..+-.-.++..+ +|.-.|| |+-.-.++|+|+.
T Consensus 530 pdG~v~ff~sylYmesiv~~w~~~gil~ei~k~KL~fIetpD~~ETs~al~ny~~aC~~gRGavl~sVargkVsEgidF~ 609 (755)
T KOG1131|consen 530 PDGIVCFFPSYLYMESIVSRWYEQGILDEIMKYKLLFIETPDFRETSLALANYRYACDNGRGAVLLSVARGKVSEGIDFD 609 (755)
T ss_pred CCceEEEEehHHHHHHHHHHHHHHhHHHHHhhCceEEEeCCchhhhHHHHHHHHHHhcCCCCceEEEEecCccccCcccc
Confidence 356889999988888877776655431 1 22222223333344444444 4666666 5558899999997
Q ss_pred CCc--EEEEcCCCCChh------------------------------HHHHHhhhccCCCCCccEEEEeChh
Q psy9399 337 AIT--HVFNYDLPKFPE------------------------------DYVHRIGRTGRAGRNGFAVSLVNHA 376 (453)
Q Consensus 337 ~~~--~Vi~~~~~~~~~------------------------------~~~Q~~GR~~R~g~~g~~~~~~~~~ 376 (453)
+-. .||.++.|.... .-.|-.||+-|...+-...++.+.+
T Consensus 610 hhyGR~ViM~gIP~qytesriLkarle~Lrd~~~irE~dflTFDAmRhaAQC~GrvLr~K~dYg~mI~aDkR 681 (755)
T KOG1131|consen 610 HHYGREVIMEGIPYQYTESRILKARLEYLRDQFQIRENDFLTFDAMRHAAQCLGRVLRGKTDYGLMIFADKR 681 (755)
T ss_pred cccCceEEEEeccchhhHHHHHHHHHHHHHHHhcccccceechHhHHHHHHHHHHHHhccccceeeEeeehh
Confidence 644 788888885211 1228889999986665566666654
No 183
>KOG1802|consensus
Probab=98.28 E-value=4.4e-06 Score=81.34 Aligned_cols=84 Identities=17% Similarity=0.204 Sum_probs=67.3
Q ss_pred HHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccC
Q psy9399 15 ALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFK 94 (453)
Q Consensus 15 ~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (453)
.+...+++.++.-|..|+.++++..-.+|.||+|+|||.+....+.+....
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~----------------------------- 452 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ----------------------------- 452 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh-----------------------------
Confidence 344568889999999999999999889999999999998765555554433
Q ss_pred CCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEE
Q psy9399 95 PAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISIL 133 (453)
Q Consensus 95 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~ 133 (453)
.+..+|+++|+..-++|+++.+.+-+ ++++.+.
T Consensus 453 -~~~~VLvcApSNiAVDqLaeKIh~tg-----LKVvRl~ 485 (935)
T KOG1802|consen 453 -HAGPVLVCAPSNIAVDQLAEKIHKTG-----LKVVRLC 485 (935)
T ss_pred -cCCceEEEcccchhHHHHHHHHHhcC-----ceEeeee
Confidence 35689999999999999999888754 5554444
No 184
>KOG1001|consensus
Probab=98.21 E-value=8.2e-06 Score=82.72 Aligned_cols=102 Identities=19% Similarity=0.290 Sum_probs=90.4
Q ss_pred CcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCC-cc-EEEEeCCcccCCCCCCCcEEEEcCCC
Q psy9399 270 GQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGR-IK-ILVATDVAARGIDVPAITHVFNYDLP 347 (453)
Q Consensus 270 ~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~-vLv~T~~~~~Gvdi~~~~~Vi~~~~~ 347 (453)
.+++||+.-...+..+...|...++....+.|.|....|.+.+..|.++. .. .+++..+...|+|+....+|+..|+-
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 48999999999999999999988898999999999999999999999653 23 34666999999999999999999999
Q ss_pred CChhHHHHHhhhccCCCCCccEEE
Q psy9399 348 KFPEDYVHRIGRTGRAGRNGFAVS 371 (453)
Q Consensus 348 ~~~~~~~Q~~GR~~R~g~~g~~~~ 371 (453)
+++....|.+-|+.|.|+...+.+
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred cChHHHHHHHHHHHHhcccceeee
Confidence 999999999999999998865554
No 185
>KOG1803|consensus
Probab=98.20 E-value=5.9e-06 Score=79.96 Aligned_cols=65 Identities=23% Similarity=0.333 Sum_probs=53.1
Q ss_pred CCcHHHHHHHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEE
Q psy9399 23 KPTGVQEQAIPAAISGRD-LIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRML 101 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~~~~~-~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 101 (453)
.+.+-|..|+....+.++ .++.||+|+|||.+....+.+.+.+ +.++|
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~-------------------------------~k~VL 233 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ-------------------------------KKRVL 233 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc-------------------------------CCeEE
Confidence 467889999999888755 8999999999999766666666555 45999
Q ss_pred EEcCcHHHHHHHHHHHH
Q psy9399 102 VLTPTRELALQVTAATE 118 (453)
Q Consensus 102 il~P~~~L~~q~~~~~~ 118 (453)
++.||..-+..+.+++.
T Consensus 234 VcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 234 VCAPSNVAVDNIVERLT 250 (649)
T ss_pred EEcCchHHHHHHHHHhc
Confidence 99999999999887543
No 186
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=98.18 E-value=1.3e-05 Score=65.22 Aligned_cols=96 Identities=19% Similarity=0.174 Sum_probs=64.1
Q ss_pred hHHHHHHHHhhCCC------ceeecCCCCCHHHHHHHHHHHhcCCc-cEEEEeCCcccCCCCCC--CcEEEEcCCCCC--
Q psy9399 281 DADIIADRLNISGF------LAAPLHGDLHQNARNRTLENLRRGRI-KILVATDVAARGIDVPA--ITHVFNYDLPKF-- 349 (453)
Q Consensus 281 ~~~~l~~~L~~~~~------~~~~~~~~~~~~~r~~~~~~f~~g~~-~vLv~T~~~~~Gvdi~~--~~~Vi~~~~~~~-- 349 (453)
..+.++..+...+. ...++.-+....+...+++.|++..- .||+++..+++|+|+|+ ++.||....|..
T Consensus 3 ~m~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~ 82 (141)
T smart00492 3 YMESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYP 82 (141)
T ss_pred HHHHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCC
Confidence 34455555554332 12333334445567889999987643 79999988999999996 567888776641
Q ss_pred -----------------------------hhHHHHHhhhccCCCCCccEEEEeChh
Q psy9399 350 -----------------------------PEDYVHRIGRTGRAGRNGFAVSLVNHA 376 (453)
Q Consensus 350 -----------------------------~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 376 (453)
...+.|.+||+.|..++-.++++++.+
T Consensus 83 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D~R 138 (141)
T smart00492 83 DSPILKARLELLRDKGQIRPFDFVSLPDAMRTLAQCVGRLIRGANDYGVVVIADKR 138 (141)
T ss_pred CCHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCccccCcCceEEEEEEecc
Confidence 112449999999987775566666643
No 187
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.18 E-value=8.3e-06 Score=77.84 Aligned_cols=95 Identities=15% Similarity=0.222 Sum_probs=61.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATER 119 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 119 (453)
-++|.|.+|||||++++-.+... .. ...+.+++++++..+|...+.+.+..
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l-~~----------------------------~~~~~~~~~l~~n~~l~~~l~~~l~~ 53 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL-QN----------------------------SEEGKKVLYLCGNHPLRNKLREQLAK 53 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh-hc----------------------------cccCCceEEEEecchHHHHHHHHHhh
Confidence 37899999999998655544443 11 12355899999999999888777665
Q ss_pred HhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEechhhhcc
Q psy9399 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLD 186 (453)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h~~~~ 186 (453)
... + ......+..+..+.............+++|||||||++..
T Consensus 54 ~~~--~---------------------~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 54 KYN--P---------------------KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hcc--c---------------------chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 320 0 0112334444444443332223457899999999999987
No 188
>PRK10536 hypothetical protein; Provisional
Probab=98.13 E-value=5.3e-05 Score=67.15 Aligned_cols=47 Identities=17% Similarity=0.108 Sum_probs=38.0
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhh
Q psy9399 19 VGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFAS 65 (453)
Q Consensus 19 ~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~ 65 (453)
.++...+..|...+.++.+...+++.||+|+|||+.++..+++.+..
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~ 101 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH 101 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 35555678999999999887789999999999999887777766543
No 189
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.13 E-value=2.8e-05 Score=79.52 Aligned_cols=67 Identities=18% Similarity=0.205 Sum_probs=53.2
Q ss_pred CCCcHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceE
Q psy9399 22 TKPTGVQEQAIPAAISG-RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRM 100 (453)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~-~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (453)
+.++..|..|+..++.. ..++|.||+|+|||.+....+.+.+.. +.++
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~-------------------------------g~~V 204 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR-------------------------------GLRV 204 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc-------------------------------CCCE
Confidence 45789999999998876 568999999999998655444444332 4489
Q ss_pred EEEcCcHHHHHHHHHHHHH
Q psy9399 101 LVLTPTRELALQVTAATER 119 (453)
Q Consensus 101 lil~P~~~L~~q~~~~~~~ 119 (453)
++++||..-+.++.+.+..
T Consensus 205 Lv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 205 LVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred EEEcCcHHHHHHHHHHHHh
Confidence 9999999999998888775
No 190
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=98.09 E-value=1.7e-05 Score=64.62 Aligned_cols=96 Identities=18% Similarity=0.177 Sum_probs=62.8
Q ss_pred hHHHHHHHHhhCCC---ceeecCCCCCHHHHHHHHHHHhcCCc---cEEEEeCC--cccCCCCCC--CcEEEEcCCCCC-
Q psy9399 281 DADIIADRLNISGF---LAAPLHGDLHQNARNRTLENLRRGRI---KILVATDV--AARGIDVPA--ITHVFNYDLPKF- 349 (453)
Q Consensus 281 ~~~~l~~~L~~~~~---~~~~~~~~~~~~~r~~~~~~f~~g~~---~vLv~T~~--~~~Gvdi~~--~~~Vi~~~~~~~- 349 (453)
..+.+++.++..+. ...++.-+....+...+++.|+++.. .||+++.- +++|+|+|+ ++.||....|..
T Consensus 3 ~m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~ 82 (142)
T smart00491 3 YLEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPN 82 (142)
T ss_pred HHHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCC
Confidence 34556666665432 11222222223345788888987543 69998876 999999997 567888887742
Q ss_pred ------------------------------hhHHHHHhhhccCCCCCccEEEEeChh
Q psy9399 350 ------------------------------PEDYVHRIGRTGRAGRNGFAVSLVNHA 376 (453)
Q Consensus 350 ------------------------------~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 376 (453)
.....|.+||+.|...+-.++++++.+
T Consensus 83 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D~R 139 (142)
T smart00491 83 PDSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLDKR 139 (142)
T ss_pred CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEecc
Confidence 112349999999998776677776653
No 191
>PF13245 AAA_19: Part of AAA domain
Probab=98.09 E-value=2e-05 Score=56.40 Aligned_cols=52 Identities=29% Similarity=0.413 Sum_probs=39.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAAT 117 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 117 (453)
.-++|.||+|||||...+-.+...+.... .. +.++++++|++..+.++.+.+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~--------------------------~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARA--------------------------DP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhc--------------------------CC-CCeEEEECCCHHHHHHHHHHH
Confidence 33667999999999876666666553211 12 558999999999999988877
No 192
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.04 E-value=0.00011 Score=74.31 Aligned_cols=142 Identities=20% Similarity=0.243 Sum_probs=85.2
Q ss_pred cHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEc
Q psy9399 25 TGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLT 104 (453)
Q Consensus 25 ~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 104 (453)
.++|+.|+...+..+-++|.|++|+|||.+... ++..+.+.. .....++++..
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~-ll~~l~~~~--------------------------~~~~~~i~l~A 206 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAK-LLAALIQLA--------------------------DGERCRIRLAA 206 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHH-HHHHHHHhc--------------------------CCCCcEEEEEC
Confidence 589999999999888899999999999975432 232222210 11134788999
Q ss_pred CcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhc------CCCCCCCccEEEE
Q psy9399 105 PTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNS------GKINFSHLQILVL 178 (453)
Q Consensus 105 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~------~~~~~~~~~~iIi 178 (453)
||..-+..+.+.+.......+ + . .... .....-..|-.+|+..... ...+...++++|+
T Consensus 207 PTgkAA~rL~e~~~~~~~~~~-~-----~------~~~~---~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIv 271 (615)
T PRK10875 207 PTGKAAARLTESLGKALRQLP-L-----T------DEQK---KRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVV 271 (615)
T ss_pred CcHHHHHHHHHHHHhhhhccc-c-----c------hhhh---hcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEE
Confidence 998888887776654321111 0 0 0000 0001123333333322111 1112234689999
Q ss_pred echhhhcccCChHHHHHHHhhCCCCccEEEEEee
Q psy9399 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSAT 212 (453)
Q Consensus 179 DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 212 (453)
||+-++. ...+..++.+++...++|++.=.
T Consensus 272 DEaSMvd----~~lm~~ll~al~~~~rlIlvGD~ 301 (615)
T PRK10875 272 DEASMVD----LPMMARLIDALPPHARVIFLGDR 301 (615)
T ss_pred ChHhccc----HHHHHHHHHhcccCCEEEEecch
Confidence 9999763 45667788888888888888644
No 193
>KOG1132|consensus
Probab=98.00 E-value=5.7e-05 Score=76.34 Aligned_cols=106 Identities=16% Similarity=0.106 Sum_probs=66.5
Q ss_pred CcEEEEeccchhHHHHHHHHhhCC-------CceeecCCCCCHHHHHHHHHHHhc--------CCccEEEEeCCcccCCC
Q psy9399 270 GQAVVFTATKRDADIIADRLNISG-------FLAAPLHGDLHQNARNRTLENLRR--------GRIKILVATDVAARGID 334 (453)
Q Consensus 270 ~~~lvf~~~~~~~~~l~~~L~~~~-------~~~~~~~~~~~~~~r~~~~~~f~~--------g~~~vLv~T~~~~~Gvd 334 (453)
..+|+|+++....+++..+.+..+ ..-..+ .--+..+-.+++..|.+ |..-..||-...++|+|
T Consensus 562 ~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~v-EPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGlD 640 (945)
T KOG1132|consen 562 YGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVV-EPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGLD 640 (945)
T ss_pred cceEEeccchHHHHHHHHHHHcchHHHHhhcccCcee-ccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCCC
Confidence 458999999988888866665421 111111 11122233444555543 33345677789999999
Q ss_pred CCC--CcEEEEcCCCCC--------------------------------------hhHHHHHhhhccCCCCCccEEEEeC
Q psy9399 335 VPA--ITHVFNYDLPKF--------------------------------------PEDYVHRIGRTGRAGRNGFAVSLVN 374 (453)
Q Consensus 335 i~~--~~~Vi~~~~~~~--------------------------------------~~~~~Q~~GR~~R~g~~g~~~~~~~ 374 (453)
+.+ .+.||..++|.- .....|.+||+.|..++-.++++++
T Consensus 641 FsD~~~RaVI~tGlPyP~~~D~~V~lK~~y~D~~~~~~g~~s~~lsg~eWY~~qA~RAvNQAiGRviRHR~D~Gav~l~D 720 (945)
T KOG1132|consen 641 FSDDNGRAVIITGLPYPPVMDPRVKLKKQYLDENSSLKGAKSQLLSGQEWYSQQAYRAVNQAIGRVIRHRNDYGAVILCD 720 (945)
T ss_pred ccccCCceeEEecCCCCCCCCHHHHHHHHhhhhhccccccccccccchHHHHhhHHHHHHHHHHHHHhhhcccceeeEee
Confidence 975 556888887631 1124599999999987755666777
Q ss_pred hh
Q psy9399 375 HA 376 (453)
Q Consensus 375 ~~ 376 (453)
.+
T Consensus 721 ~R 722 (945)
T KOG1132|consen 721 DR 722 (945)
T ss_pred ch
Confidence 65
No 194
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.99 E-value=0.00011 Score=74.32 Aligned_cols=143 Identities=20% Similarity=0.208 Sum_probs=84.2
Q ss_pred cHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEc
Q psy9399 25 TGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLT 104 (453)
Q Consensus 25 ~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 104 (453)
.++|+.|+..++.++-++|.|+.|+|||.+.. .++..+..... .....++++..
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~-~ll~~l~~~~~-------------------------~~~~~~I~l~A 200 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVA-RLLLALVKQSP-------------------------KQGKLRIALAA 200 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHH-HHHHHHHHhcc-------------------------ccCCCcEEEEC
Confidence 37999999999998889999999999998543 23332222100 00124799999
Q ss_pred CcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhc------CCCCCCCccEEEE
Q psy9399 105 PTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNS------GKINFSHLQILVL 178 (453)
Q Consensus 105 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~------~~~~~~~~~~iIi 178 (453)
||---+..+.+.+...... +... ... .....+-..|-.+|+..... .......+++|||
T Consensus 201 PTGkAA~rL~e~~~~~~~~---l~~~--------~~~----~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIi 265 (586)
T TIGR01447 201 PTGKAAARLAESLRKAVKN---LAAA--------EAL----IAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVV 265 (586)
T ss_pred CcHHHHHHHHHHHHhhhcc---cccc--------hhh----hhccccccchhhhhhcccCCcchhhhcccCCCcccEEEE
Confidence 9987777776665543211 1100 000 00111223343333322110 0112235799999
Q ss_pred echhhhcccCChHHHHHHHhhCCCCccEEEEEee
Q psy9399 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSAT 212 (453)
Q Consensus 179 DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 212 (453)
||+-++. ...+..++.+++...++|++.=.
T Consensus 266 DEaSMvd----~~l~~~ll~al~~~~rlIlvGD~ 295 (586)
T TIGR01447 266 DEASMVD----LPLMAKLLKALPPNTKLILLGDK 295 (586)
T ss_pred cccccCC----HHHHHHHHHhcCCCCEEEEECCh
Confidence 9999764 34566778888888888877543
No 195
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.99 E-value=0.00013 Score=75.79 Aligned_cols=128 Identities=21% Similarity=0.195 Sum_probs=79.4
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCc
Q psy9399 19 VGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP 98 (453)
Q Consensus 19 ~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
.++ .+++.|.+|+..+..++-+++.|+.|+|||.+ +..++..+... ....
T Consensus 320 ~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~-l~~i~~~~~~~----------------------------~~~~ 369 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTI-TRAIIELAEEL----------------------------GGLL 369 (720)
T ss_pred cCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHH-HHHHHHHHHHc----------------------------CCCc
Confidence 455 69999999999998888899999999999974 34444443331 0114
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhc-----CCCCCCCc
Q psy9399 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNS-----GKINFSHL 173 (453)
Q Consensus 99 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~-----~~~~~~~~ 173 (453)
.++++.||-.-+..+.+.. + ... .|..+++..... ........
T Consensus 370 ~v~l~ApTg~AA~~L~e~~---g-----~~a------------------------~Tih~lL~~~~~~~~~~~~~~~~~~ 417 (720)
T TIGR01448 370 PVGLAAPTGRAAKRLGEVT---G-----LTA------------------------STIHRLLGYGPDTFRHNHLEDPIDC 417 (720)
T ss_pred eEEEEeCchHHHHHHHHhc---C-----Ccc------------------------ccHHHHhhccCCccchhhhhccccC
Confidence 7888999977776544321 1 110 111111110000 00012457
Q ss_pred cEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEee
Q psy9399 174 QILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSAT 212 (453)
Q Consensus 174 ~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 212 (453)
++||+||++++.. ..+..++..++...++|++.-+
T Consensus 418 ~llIvDEaSMvd~----~~~~~Ll~~~~~~~rlilvGD~ 452 (720)
T TIGR01448 418 DLLIVDESSMMDT----WLALSLLAALPDHARLLLVGDT 452 (720)
T ss_pred CEEEEeccccCCH----HHHHHHHHhCCCCCEEEEECcc
Confidence 8999999998743 3456667777877888877544
No 196
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.98 E-value=0.00017 Score=62.74 Aligned_cols=153 Identities=22% Similarity=0.276 Sum_probs=92.3
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhc---CCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhcc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAIS---GRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNL 77 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~---~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~ 77 (453)
.+|+...-+.++.-.++. ++ -+|+.|.+....+.+ +++.+..+-+|.|||.+ .+|++..+..+.
T Consensus 3 ~~w~p~~~P~wLl~E~e~-~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg---------- 69 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIES-NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADG---------- 69 (229)
T ss_pred CCCCchhChHHHHHHHHc-Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCC----------
Confidence 367777777777766653 44 489999999988875 46799999999999985 566665555421
Q ss_pred ccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcc-cC-CeeEEEEECCCchH----HHH----HHhcC
Q psy9399 78 NQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLY-MK-KIKAISILGGMPYL----RQM----QLLSR 147 (453)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~-~~~~~~~~~~~~~~----~~~----~~~~~ 147 (453)
..-+.+++|. +|..|..+.+....+. .+ .+...-+.-..... ... .....
T Consensus 70 -------------------~~LvrviVpk-~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~ 129 (229)
T PF12340_consen 70 -------------------SRLVRVIVPK-ALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMR 129 (229)
T ss_pred -------------------CcEEEEEcCH-HHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHH
Confidence 2245566665 7889988887764322 21 11111111111111 111 11223
Q ss_pred CCCEEEeChHHHHHHHhc-------CCC-----------CCCCccEEEEechhhhcc
Q psy9399 148 NPEILLATPGRLIDHMNS-------GKI-----------NFSHLQILVLDEADRMLD 186 (453)
Q Consensus 148 ~~~Ilv~T~~~l~~~l~~-------~~~-----------~~~~~~~iIiDE~h~~~~ 186 (453)
...|+++||+.+..+.-. +.. .+.+..-=|+||+|..+.
T Consensus 130 ~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 130 SGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred cCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 457999999987554311 111 123344578999997654
No 197
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.83 E-value=0.00036 Score=72.90 Aligned_cols=121 Identities=20% Similarity=0.249 Sum_probs=73.2
Q ss_pred CCcHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEE
Q psy9399 23 KPTGVQEQAIPAAISG-RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRML 101 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~~~-~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 101 (453)
.+++.|.+|+..+..+ +-++|.|++|+|||.+ +-.+...+.. .+.+++
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl-l~~i~~~~~~------------------------------~g~~V~ 400 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM-LKAAREAWEA------------------------------AGYRVI 400 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH-HHHHHHHHHh------------------------------CCCeEE
Confidence 5899999999999875 4589999999999974 3444444332 245899
Q ss_pred EEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEech
Q psy9399 102 VLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181 (453)
Q Consensus 102 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~ 181 (453)
+++||---+..+.+.. + +.. .|..++...+......+...++||+||+
T Consensus 401 ~~ApTg~Aa~~L~~~~---g-----~~a------------------------~Ti~~~~~~~~~~~~~~~~~~llIvDEa 448 (744)
T TIGR02768 401 GAALSGKAAEGLQAES---G-----IES------------------------RTLASLEYAWANGRDLLSDKDVLVIDEA 448 (744)
T ss_pred EEeCcHHHHHHHHhcc---C-----Cce------------------------eeHHHHHhhhccCcccCCCCcEEEEECc
Confidence 9999966655543210 1 111 1222221112222234567899999999
Q ss_pred hhhcccCChHHHHHHHh-hCCCCccEEEEE
Q psy9399 182 DRMLDMGFINDIEKIVD-ATPVTRQTMLFS 210 (453)
Q Consensus 182 h~~~~~~~~~~~~~~~~-~~~~~~~~i~~S 210 (453)
-++....+ ..++. ..+...++|++.
T Consensus 449 sMv~~~~~----~~Ll~~~~~~~~kliLVG 474 (744)
T TIGR02768 449 GMVGSRQM----ARVLKEAEEAGAKVVLVG 474 (744)
T ss_pred ccCCHHHH----HHHHHHHHhcCCEEEEEC
Confidence 98764433 33333 223445566655
No 198
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.81 E-value=0.00044 Score=73.48 Aligned_cols=126 Identities=21% Similarity=0.231 Sum_probs=76.9
Q ss_pred CCCCCCcHHHHHHHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCC
Q psy9399 19 VGYTKPTGVQEQAIPAAISGRD-LIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ 97 (453)
Q Consensus 19 ~~~~~~~~~Q~~~~~~~~~~~~-~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (453)
.|+ .+++-|.+++..++.+++ ++|.|+.|+|||.+ +-.+...+.. .+
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~------------------------------~G 390 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA------------------------------AG 390 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH------------------------------cC
Confidence 455 699999999999998665 88999999999974 4444444332 25
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEE
Q psy9399 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177 (453)
Q Consensus 98 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iI 177 (453)
.+++.+.||---+..+.+. . + +. -.|..+|...+..+...+...++||
T Consensus 391 ~~V~~~ApTGkAA~~L~e~----t---G-i~------------------------a~TI~sll~~~~~~~~~l~~~~vlI 438 (988)
T PRK13889 391 YEVRGAALSGIAAENLEGG----S---G-IA------------------------SRTIASLEHGWGQGRDLLTSRDVLV 438 (988)
T ss_pred CeEEEecCcHHHHHHHhhc----c---C-cc------------------------hhhHHHHHhhhcccccccccCcEEE
Confidence 5899999996655444321 0 0 11 1122222222222223456778999
Q ss_pred EechhhhcccCChHHHHHHHhh-CCCCccEEEEEee
Q psy9399 178 LDEADRMLDMGFINDIEKIVDA-TPVTRQTMLFSAT 212 (453)
Q Consensus 178 iDE~h~~~~~~~~~~~~~~~~~-~~~~~~~i~~SAT 212 (453)
|||+-++.... +..++.. .+...++|++.=+
T Consensus 439 VDEASMv~~~~----m~~LL~~a~~~garvVLVGD~ 470 (988)
T PRK13889 439 IDEAGMVGTRQ----LERVLSHAADAGAKVVLVGDP 470 (988)
T ss_pred EECcccCCHHH----HHHHHHhhhhCCCEEEEECCH
Confidence 99999775443 3344432 2445566666544
No 199
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.77 E-value=0.00015 Score=66.52 Aligned_cols=146 Identities=18% Similarity=0.276 Sum_probs=84.8
Q ss_pred CCCCCCcHHHHHHHHHHhcCCc--EEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCC
Q psy9399 19 VGYTKPTGVQEQAIPAAISGRD--LIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPA 96 (453)
Q Consensus 19 ~~~~~~~~~Q~~~~~~~~~~~~--~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (453)
.|+...+..|.-|+..++...- +.+.|+.|||||+.+|.+.+.+....+ .
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~----------------------------~ 275 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK----------------------------R 275 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh----------------------------h
Confidence 6887667788888988887643 888999999999999988887766522 3
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEE----eChHHHHHHHhcCCCCCCC
Q psy9399 97 QPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILL----ATPGRLIDHMNSGKINFSH 172 (453)
Q Consensus 97 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv----~T~~~l~~~l~~~~~~~~~ 172 (453)
..+++|.-|+..+-+.+ + +.++.+ .++...|...+...-..+. ++.+.+-..+.++.+.+..
T Consensus 276 y~KiiVtRp~vpvG~dI-------G-fLPG~e------EeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~a 341 (436)
T COG1875 276 YRKIIVTRPTVPVGEDI-------G-FLPGTE------EEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEA 341 (436)
T ss_pred hceEEEecCCcCccccc-------C-cCCCch------hhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeee
Confidence 44788888886665332 0 000000 0000111111111000111 1133444444433332211
Q ss_pred ----------ccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEE
Q psy9399 173 ----------LQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFS 210 (453)
Q Consensus 173 ----------~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 210 (453)
=.+||+|||+.+. ...+..++.......+++++.
T Consensus 342 lt~IRGRSl~~~FiIIDEaQNLT----pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 342 LTYIRGRSLPDSFIIIDEAQNLT----PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred eeeecccccccceEEEehhhccC----HHHHHHHHHhccCCCEEEEcC
Confidence 1589999999875 456778888887777666554
No 200
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.69 E-value=0.0003 Score=68.34 Aligned_cols=142 Identities=15% Similarity=0.118 Sum_probs=76.2
Q ss_pred EEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHH-h
Q psy9399 43 VSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY-G 121 (453)
Q Consensus 43 v~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~-~ 121 (453)
..+.||||||++....|+....+ +....|+.|.....++....-+..- .
T Consensus 2 f~matgsgkt~~ma~lil~~y~k------------------------------gyr~flffvnq~nilekt~~nftd~~s 51 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKK------------------------------GYRNFLFFVNQANILEKTKLNFTDSVS 51 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHh------------------------------chhhEEEEecchhHHHHHHhhcccchh
Confidence 57899999999877777776655 2346788888877776654332110 0
Q ss_pred cccCCeeEEEEECCCchHH----HHHHhcCCCCEEEeChHHHHHHHhcCCC------CCCCcc-EEEEechhhhcccC--
Q psy9399 122 LYMKKIKAISILGGMPYLR----QMQLLSRNPEILLATPGRLIDHMNSGKI------NFSHLQ-ILVLDEADRMLDMG-- 188 (453)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Ilv~T~~~l~~~l~~~~~------~~~~~~-~iIiDE~h~~~~~~-- 188 (453)
...- +.-...+++....- .......+..|+++|.+.|...+.+... .+.+.. +.+-||+|++....
T Consensus 52 ~kyl-f~e~i~~~d~~i~ikkvn~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkk 130 (812)
T COG3421 52 SKYL-FSENININDENIEIKKVNNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKK 130 (812)
T ss_pred hhHh-hhhhhhcCCceeeeeeecccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhh
Confidence 0000 00011111111100 0011233567999999999887755332 133334 46779999986321
Q ss_pred -------ChHHHHHHHh---hCCCCccEEEEEeecCh
Q psy9399 189 -------FINDIEKIVD---ATPVTRQTMLFSATLDG 215 (453)
Q Consensus 189 -------~~~~~~~~~~---~~~~~~~~i~~SAT~~~ 215 (453)
....|...+. ...+..-++..|||.+.
T Consensus 131 k~~de~~~~~~we~~v~la~~~nkd~~~lef~at~~k 167 (812)
T COG3421 131 KLNDEASEKRNWESVVKLALEQNKDNLLLEFSATIPK 167 (812)
T ss_pred hcccHHHHHhhHHHHHHHHHhcCCCceeehhhhcCCc
Confidence 1222222221 12233457778999874
No 201
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.67 E-value=0.0011 Score=70.94 Aligned_cols=138 Identities=22% Similarity=0.231 Sum_probs=81.5
Q ss_pred CCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccch
Q psy9399 7 GLHELVLKALVKVGYTKPTGVQEQAIPAAISG-RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIY 85 (453)
Q Consensus 7 ~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~-~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (453)
++++..+......++ .+++-|.+++..+..+ +-++|.|+.|+|||. .+-++...+..
T Consensus 366 ~v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt-~l~~~~~~~e~-------------------- 423 (1102)
T PRK13826 366 GVREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTT-MMKAAREAWEA-------------------- 423 (1102)
T ss_pred CCCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHH-HHHHHHHHHHH--------------------
Confidence 344544444444454 6999999999988654 448999999999997 44455554433
Q ss_pred hhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhc
Q psy9399 86 THKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNS 165 (453)
Q Consensus 86 ~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~ 165 (453)
.+.+++.+.||-.-+..+.+. . ++.. .|-.++...+..
T Consensus 424 ----------~G~~V~g~ApTgkAA~~L~e~----~----Gi~a------------------------~TIas~ll~~~~ 461 (1102)
T PRK13826 424 ----------AGYRVVGGALAGKAAEGLEKE----A----GIQS------------------------RTLSSWELRWNQ 461 (1102)
T ss_pred ----------cCCeEEEEcCcHHHHHHHHHh----h----CCCe------------------------eeHHHHHhhhcc
Confidence 255899999996666554321 1 1211 122222111112
Q ss_pred CCCCCCCccEEEEechhhhcccCChHHHHHHHhhCC-CCccEEEEEee
Q psy9399 166 GKINFSHLQILVLDEADRMLDMGFINDIEKIVDATP-VTRQTMLFSAT 212 (453)
Q Consensus 166 ~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~-~~~~~i~~SAT 212 (453)
+...+..-++|||||+.++.... +..++...+ ...++|++.=+
T Consensus 462 ~~~~l~~~~vlVIDEAsMv~~~~----m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 462 GRDQLDNKTVFVLDEAGMVASRQ----MALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred CccCCCCCcEEEEECcccCCHHH----HHHHHHHHHhcCCEEEEECCH
Confidence 22345667899999999775433 334444443 34566666543
No 202
>KOG1805|consensus
Probab=97.63 E-value=0.00017 Score=73.68 Aligned_cols=126 Identities=17% Similarity=0.206 Sum_probs=81.8
Q ss_pred CCCCcHHHHHHHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCce
Q psy9399 21 YTKPTGVQEQAIPAAISGRD-LIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPR 99 (453)
Q Consensus 21 ~~~~~~~Q~~~~~~~~~~~~-~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (453)
+..++..|++|+..++..++ .+|.|-+|+|||.+....+...+.. +.+
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~-------------------------------gkk 715 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVAL-------------------------------GKK 715 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHc-------------------------------CCe
Confidence 34678899999999887766 8999999999998655444443333 558
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCch-----------------HHHHHHhcCCCCEEEeChHHHHHH
Q psy9399 100 MLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPY-----------------LRQMQLLSRNPEILLATPGRLIDH 162 (453)
Q Consensus 100 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~Ilv~T~~~l~~~ 162 (453)
||..+-|..-+..+.-.+..++.. ...+..+... ..........+.|+.||=--+.+.
T Consensus 716 VLLtsyThsAVDNILiKL~~~~i~-----~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~p 790 (1100)
T KOG1805|consen 716 VLLTSYTHSAVDNILIKLKGFGIY-----ILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHP 790 (1100)
T ss_pred EEEEehhhHHHHHHHHHHhccCcc-----eeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCch
Confidence 899888888888888777765422 2222211111 122233345667888873222222
Q ss_pred HhcCCCCCCCccEEEEechhhhcc
Q psy9399 163 MNSGKINFSHLQILVLDEADRMLD 186 (453)
Q Consensus 163 l~~~~~~~~~~~~iIiDE~h~~~~ 186 (453)
+. ..+.++++|+|||-.++-
T Consensus 791 lf----~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 791 LF----VNRQFDYCIIDEASQILL 810 (1100)
T ss_pred hh----hccccCEEEEcccccccc
Confidence 22 236699999999997653
No 203
>PRK04296 thymidine kinase; Provisional
Probab=97.60 E-value=0.00019 Score=62.01 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=17.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHh
Q psy9399 40 DLIVSSQTGSGKTAAFMLPALHK 62 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~l~~~~~~ 62 (453)
-.++.||+|+|||...+-.+...
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHH
Confidence 36889999999998665555544
No 204
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.56 E-value=0.00026 Score=66.63 Aligned_cols=123 Identities=20% Similarity=0.123 Sum_probs=76.1
Q ss_pred CcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEE
Q psy9399 24 PTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVL 103 (453)
Q Consensus 24 ~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 103 (453)
+++-|.+++.. ..++++|.|+.|||||.+.+.-+...+.... -...++|++
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~---------------------------~~~~~Il~l 51 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG---------------------------VPPERILVL 51 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS---------------------------STGGGEEEE
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc---------------------------CChHHheec
Confidence 57889999987 6678999999999999987777766665532 123479999
Q ss_pred cCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCC--CCccEEEEech
Q psy9399 104 TPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINF--SHLQILVLDEA 181 (453)
Q Consensus 104 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~--~~~~~iIiDE~ 181 (453)
++|+..+.++.+.+........... ...............+.|+|...++..+-+..... -.-..-++|+.
T Consensus 52 Tft~~aa~e~~~ri~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~ 124 (315)
T PF00580_consen 52 TFTNAAAQEMRERIRELLEEEQQES-------SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEE 124 (315)
T ss_dssp ESSHHHHHHHHHHHHHHHHHCCHCC-------TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHH
T ss_pred ccCHHHHHHHHHHHHHhcCcccccc-------cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecch
Confidence 9999999999888887543221000 00001111111234688999888866554322111 12346677777
Q ss_pred h
Q psy9399 182 D 182 (453)
Q Consensus 182 h 182 (453)
.
T Consensus 125 ~ 125 (315)
T PF00580_consen 125 E 125 (315)
T ss_dssp H
T ss_pred h
Confidence 6
No 205
>PRK08181 transposase; Validated
Probab=97.54 E-value=0.00076 Score=61.20 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=24.3
Q ss_pred CcHHHHHHHH----HHhcCCcEEEEcCCCchHHHHHHHH
Q psy9399 24 PTGVQEQAIP----AAISGRDLIVSSQTGSGKTAAFMLP 58 (453)
Q Consensus 24 ~~~~Q~~~~~----~~~~~~~~lv~a~TGsGKT~~~l~~ 58 (453)
+...|..++. .+..+.++++.||+|+|||..+...
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Ai 126 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAI 126 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHH
Confidence 3466666553 3346678999999999999744433
No 206
>PRK06921 hypothetical protein; Provisional
Probab=97.51 E-value=0.001 Score=60.55 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=18.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhhh
Q psy9399 38 GRDLIVSSQTGSGKTAAFMLPALHKFA 64 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~l~~~~~~l~ 64 (453)
+.++++.|++|+|||..+ .++...+.
T Consensus 117 ~~~l~l~G~~G~GKThLa-~aia~~l~ 142 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLL-TAAANELM 142 (266)
T ss_pred CCeEEEECCCCCcHHHHH-HHHHHHHh
Confidence 456999999999999743 33444433
No 207
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.51 E-value=0.00046 Score=55.60 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=23.4
Q ss_pred cEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeec
Q psy9399 174 QILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATL 213 (453)
Q Consensus 174 ~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 213 (453)
.+||+||+|++.. ...+..+........-.+.+++++
T Consensus 89 ~~lviDe~~~l~~---~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLFS---DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHHT---HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcCC---HHHHHHHHHHHhCCCCeEEEEECh
Confidence 6999999999741 444444444444444556666664
No 208
>PRK06526 transposase; Provisional
Probab=97.35 E-value=0.0013 Score=59.41 Aligned_cols=27 Identities=15% Similarity=0.254 Sum_probs=19.8
Q ss_pred HhcCCcEEEEcCCCchHHHHHHHHHHH
Q psy9399 35 AISGRDLIVSSQTGSGKTAAFMLPALH 61 (453)
Q Consensus 35 ~~~~~~~lv~a~TGsGKT~~~l~~~~~ 61 (453)
+..+.++++.||+|+|||..+...+..
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHH
Confidence 345578999999999999755444433
No 209
>KOG0989|consensus
Probab=97.33 E-value=0.00054 Score=61.45 Aligned_cols=45 Identities=20% Similarity=0.326 Sum_probs=34.2
Q ss_pred CCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecC
Q psy9399 169 NFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLD 214 (453)
Q Consensus 169 ~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 214 (453)
+.+.+..+|+||||.|.... ...+++.++..+...++++++.-++
T Consensus 126 ~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CCCcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCChh
Confidence 45678999999999987654 3556667777777888888887754
No 210
>PRK12377 putative replication protein; Provisional
Probab=97.30 E-value=0.0024 Score=57.19 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=17.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhhh
Q psy9399 39 RDLIVSSQTGSGKTAAFMLPALHKFA 64 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~~~~~~l~ 64 (453)
.++++.||+|+|||..+ .++...+.
T Consensus 102 ~~l~l~G~~GtGKThLa-~AIa~~l~ 126 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLA-AAIGNRLL 126 (248)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 46999999999999743 33333433
No 211
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.30 E-value=0.003 Score=51.61 Aligned_cols=17 Identities=29% Similarity=0.591 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCchHHHH
Q psy9399 38 GRDLIVSSQTGSGKTAA 54 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~ 54 (453)
+..+++.||+|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46799999999999974
No 212
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.28 E-value=0.0011 Score=53.92 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCchHHHHHH
Q psy9399 38 GRDLIVSSQTGSGKTAAFM 56 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~l 56 (453)
+..+++.||+|+|||....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 2 GEVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CCEEEEECCCCCcHHHHHH
Confidence 3568999999999997443
No 213
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.26 E-value=0.028 Score=65.04 Aligned_cols=236 Identities=15% Similarity=0.188 Sum_probs=125.3
Q ss_pred CCcHHHHHHHHHHhcCC--cEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceE
Q psy9399 23 KPTGVQEQAIPAAISGR--DLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRM 100 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~~~~--~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (453)
.+++-|.+++..++... -.+|.|+.|+|||.+ +-.+...+.. .+.++
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~------------------------------~G~~V 477 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLASE------------------------------QGYEI 477 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHHh------------------------------cCCeE
Confidence 58899999999998764 489999999999973 4444444332 25689
Q ss_pred EEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEec
Q psy9399 101 LVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180 (453)
Q Consensus 101 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE 180 (453)
+.+.||-.-+..+.+...... .....+...+... .-..|...|. .+..++..-++|||||
T Consensus 478 ~~lAPTgrAA~~L~e~~g~~A--------------~Ti~~~l~~l~~~--~~~~tv~~fl----~~~~~l~~~~vlIVDE 537 (1960)
T TIGR02760 478 QIITAGSLSAQELRQKIPRLA--------------STFITWVKNLFND--DQDHTVQGLL----DKSSPFSNKDIFVVDE 537 (1960)
T ss_pred EEEeCCHHHHHHHHHHhcchh--------------hhHHHHHHhhccc--ccchhHHHhh----cccCCCCCCCEEEEEC
Confidence 999999877666654322110 0001111111111 1122323332 2333456789999999
Q ss_pred hhhhcccCChHHHHHHHhhC-CCCccEEEEEeec-------ChHHHHHHHhhcCCCeEEEecccccccccceEEEEEEcc
Q psy9399 181 ADRMLDMGFINDIEKIVDAT-PVTRQTMLFSATL-------DGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDD 252 (453)
Q Consensus 181 ~h~~~~~~~~~~~~~~~~~~-~~~~~~i~~SAT~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (453)
+-++... .+..++... +...++|++.=+- ...+..+.... -+.. ...........+ .+...++
T Consensus 538 AsMl~~~----~~~~Ll~~a~~~garvVlvGD~~QL~sV~aG~~f~~L~~~g--v~t~-~l~~i~rq~~~v--~i~~~~~ 608 (1960)
T TIGR02760 538 ANKLSNN----ELLKLIDKAEQHNSKLILLNDSAQRQGMSAGSAIDLLKEGG--VTTY-AWVDTKQQKASV--EISEAVD 608 (1960)
T ss_pred CCCCCHH----HHHHHHHHHhhcCCEEEEEcChhhcCccccchHHHHHHHCC--CcEE-EeecccccCcce--eeeccCc
Confidence 9987533 445555433 4567788776542 13333333321 1211 111111110111 1222222
Q ss_pred hhhHHHHHHHHHhhC-CCCcEEEEeccchhHHHHHHHHhh----CC------Cceeec-CCCCCHHHHHHHHHHHhcCC
Q psy9399 253 ILHKNRLLDYLLRDK-RVGQAVVFTATKRDADIIADRLNI----SG------FLAAPL-HGDLHQNARNRTLENLRRGR 319 (453)
Q Consensus 253 ~~~~~~~~~~l~~~~-~~~~~lvf~~~~~~~~~l~~~L~~----~~------~~~~~~-~~~~~~~~r~~~~~~f~~g~ 319 (453)
......+....+.-. ....++|+..+..+.+.+....+. .| .....+ ...++..++.. ...|+.|.
T Consensus 609 ~~r~~~ia~~y~~L~~~r~~tliv~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~-~~~Yr~Gd 686 (1960)
T TIGR02760 609 KLRVDYIASAWLDLTPDRQNSQVLATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRN-AAHYKQGM 686 (1960)
T ss_pred hHHHHHHHHHHHhcccccCceEEEcCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhh-HhhcCCCC
Confidence 222233444544433 334689999998888877777653 22 222222 23466766663 36666653
No 214
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.18 E-value=0.0038 Score=59.73 Aligned_cols=56 Identities=9% Similarity=0.148 Sum_probs=34.8
Q ss_pred ChHHHHHHHhcCCCCCCCccEEEEechhhhcccC-ChHHHHHHHhhCCCC-ccEEEEEeecC
Q psy9399 155 TPGRLIDHMNSGKINFSHLQILVLDEADRMLDMG-FINDIEKIVDATPVT-RQTMLFSATLD 214 (453)
Q Consensus 155 T~~~l~~~l~~~~~~~~~~~~iIiDE~h~~~~~~-~~~~~~~~~~~~~~~-~~~i~~SAT~~ 214 (453)
++..+...+.. +.++++|++|++.+..... ....+..++...... ..++.+|||..
T Consensus 241 ~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~ 298 (388)
T PRK12723 241 SFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK 298 (388)
T ss_pred cHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC
Confidence 34445444432 3678999999999875321 234555555554333 46788999975
No 215
>PRK14974 cell division protein FtsY; Provisional
Probab=97.17 E-value=0.0067 Score=56.89 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=37.0
Q ss_pred CCccEEEEechhhhc-ccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHh
Q psy9399 171 SHLQILVLDEADRML-DMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAEN 223 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~-~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~ 223 (453)
..+++|++|.+.++. +......+..+.........++.++||...........
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~ 274 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQARE 274 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHH
Confidence 457899999999876 34456677777766666667888899876544444443
No 216
>PRK08116 hypothetical protein; Validated
Probab=97.13 E-value=0.0049 Score=56.21 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=17.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhhhh
Q psy9399 40 DLIVSSQTGSGKTAAFMLPALHKFAS 65 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~l~~~~~~l~~ 65 (453)
.+++.|++|+|||..+. ++...+..
T Consensus 116 gl~l~G~~GtGKThLa~-aia~~l~~ 140 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAA-CIANELIE 140 (268)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHHH
Confidence 49999999999998443 44444443
No 217
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.12 E-value=0.011 Score=55.93 Aligned_cols=71 Identities=15% Similarity=0.309 Sum_probs=47.8
Q ss_pred CEEEeChHHHHHHHhcCCCCCCCccEEEEechhhhc-ccCChHHHHHHHhhCCCCccEEEEEeecC-hHHHHHHHhh
Q psy9399 150 EILLATPGRLIDHMNSGKINFSHLQILVLDEADRML-DMGFINDIEKIVDATPVTRQTMLFSATLD-GIVGNMAENI 224 (453)
Q Consensus 150 ~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h~~~-~~~~~~~~~~~~~~~~~~~~~i~~SAT~~-~~~~~~~~~~ 224 (453)
-.++-+|.-|...+. .+.++++|.+|=+-+-. |......+..+......-.-.+.+|||.. ..+......+
T Consensus 263 ~~vv~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f 335 (407)
T COG1419 263 LEVVYSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQF 335 (407)
T ss_pred eEEecCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHh
Confidence 356667777766665 56788999999887533 44466777777777655566888899865 3445555444
No 218
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.11 E-value=0.00091 Score=64.08 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=26.7
Q ss_pred CcHHHHHHHHHH------hcCCcEEEEcCCCchHHHH
Q psy9399 24 PTGVQEQAIPAA------ISGRDLIVSSQTGSGKTAA 54 (453)
Q Consensus 24 ~~~~Q~~~~~~~------~~~~~~lv~a~TGsGKT~~ 54 (453)
++.-|++++..+ ..+..++|.|+-|+|||+.
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l 38 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL 38 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH
Confidence 678899998888 5667799999999999963
No 219
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.05 E-value=0.0082 Score=53.71 Aligned_cols=44 Identities=25% Similarity=0.375 Sum_probs=25.1
Q ss_pred CCCccEEEEechhhhcccCChH-HHHHHHhhC-CCCccEEEEEeec
Q psy9399 170 FSHLQILVLDEADRMLDMGFIN-DIEKIVDAT-PVTRQTMLFSATL 213 (453)
Q Consensus 170 ~~~~~~iIiDE~h~~~~~~~~~-~~~~~~~~~-~~~~~~i~~SAT~ 213 (453)
+.++++|||||++......+.. .+..++... .....+++.|--.
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~ 205 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSN 205 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCC
Confidence 4578999999999765444333 333344432 2234456555443
No 220
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.04 E-value=0.0032 Score=59.74 Aligned_cols=46 Identities=15% Similarity=0.238 Sum_probs=26.4
Q ss_pred CCCccEEEEechhhhccc-CChHHHHHHHhhCCCCccEEEEEeecCh
Q psy9399 170 FSHLQILVLDEADRMLDM-GFINDIEKIVDATPVTRQTMLFSATLDG 215 (453)
Q Consensus 170 ~~~~~~iIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~~SAT~~~ 215 (453)
+.+.++|+||.+=..... .....+..+.........++.+|||...
T Consensus 213 l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~ 259 (374)
T PRK14722 213 LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHG 259 (374)
T ss_pred hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccCh
Confidence 456789999999754322 2233333333322333458888999754
No 221
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.03 E-value=0.005 Score=57.85 Aligned_cols=42 Identities=14% Similarity=0.015 Sum_probs=33.2
Q ss_pred CcHHHHHHHHHHhcCC----cEEEEcCCCchHHHHHHHHHHHhhhh
Q psy9399 24 PTGVQEQAIPAAISGR----DLIVSSQTGSGKTAAFMLPALHKFAS 65 (453)
Q Consensus 24 ~~~~Q~~~~~~~~~~~----~~lv~a~TGsGKT~~~l~~~~~~l~~ 65 (453)
+.|||...+..+...+ ..++.||.|.|||..+...+...+..
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~ 49 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCE 49 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCC
Confidence 5799999999988553 38899999999998777666666554
No 222
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.96 E-value=0.0023 Score=56.51 Aligned_cols=47 Identities=11% Similarity=0.158 Sum_probs=28.9
Q ss_pred CCCccEEEEechhhhcccC-ChHHHHHHHhhC-CCCccEEEEEeecChH
Q psy9399 170 FSHLQILVLDEADRMLDMG-FINDIEKIVDAT-PVTRQTMLFSATLDGI 216 (453)
Q Consensus 170 ~~~~~~iIiDE~h~~~~~~-~~~~~~~~~~~~-~~~~~~i~~SAT~~~~ 216 (453)
+..++++++|.+|.+.... ....+..++..+ ....++|+.|..+|..
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSE 143 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcc
Confidence 4678999999999887542 234444444443 2345677666666543
No 223
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.93 E-value=0.0028 Score=57.15 Aligned_cols=65 Identities=17% Similarity=0.286 Sum_probs=52.9
Q ss_pred HHHHHHHhcCCccEEEEeCCcccCCCCCC--------CcEEEEcCCCCChhHHHHHhhhccCCCCC-ccEEEEe
Q psy9399 309 NRTLENLRRGRIKILVATDVAARGIDVPA--------ITHVFNYDLPKFPEDYVHRIGRTGRAGRN-GFAVSLV 373 (453)
Q Consensus 309 ~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~--------~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~-g~~~~~~ 373 (453)
....+.|.+|+.+|+|.+++.+.|+.+.. -++-|...+||+....+|..||++|.++. ...|.++
T Consensus 51 ~~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l 124 (278)
T PF13871_consen 51 IAEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFL 124 (278)
T ss_pred HHHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEe
Confidence 35667899999999999999999999863 22456789999999999999999999875 4444443
No 224
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.90 E-value=0.0049 Score=55.67 Aligned_cols=71 Identities=15% Similarity=0.266 Sum_probs=45.5
Q ss_pred HHhCCCCCCcHHHHHHHHHHh-------cCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhh
Q psy9399 16 LVKVGYTKPTGVQEQAIPAAI-------SGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHK 88 (453)
Q Consensus 16 l~~~~~~~~~~~Q~~~~~~~~-------~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (453)
+..+.|.-....+..++..+. .++++++.||+|+|||..+.....+.+ .
T Consensus 76 ~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~----------------------- 131 (254)
T COG1484 76 FEEFDFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-K----------------------- 131 (254)
T ss_pred cccccccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-H-----------------------
Confidence 344555555556666555543 456899999999999985444444433 3
Q ss_pred hhcccCCCCceEEEEcCcHHHHHHHHHHHH
Q psy9399 89 ERLRFKPAQPRMLVLTPTRELALQVTAATE 118 (453)
Q Consensus 89 ~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 118 (453)
.+.-++++++.+++.++...+.
T Consensus 132 --------~g~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 132 --------AGISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred --------cCCeEEEEEHHHHHHHHHHHHh
Confidence 2245666788888888765443
No 225
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.86 E-value=0.02 Score=54.35 Aligned_cols=71 Identities=8% Similarity=0.137 Sum_probs=38.5
Q ss_pred EeChHHHHHHHhcCCCCCCCccEEEEechhhhccc-CChHHHHHHHhhCCCCccEEEEEeecCh-HHHHHHHhh
Q psy9399 153 LATPGRLIDHMNSGKINFSHLQILVLDEADRMLDM-GFINDIEKIVDATPVTRQTMLFSATLDG-IVGNMAENI 224 (453)
Q Consensus 153 v~T~~~l~~~l~~~~~~~~~~~~iIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~~SAT~~~-~~~~~~~~~ 224 (453)
+.++..+.+.+..-. .-.++++|++|-+=+.... .....+..++.......-++.+|||... .+....+.+
T Consensus 302 ~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F 374 (436)
T PRK11889 302 VRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNF 374 (436)
T ss_pred cCCHHHHHHHHHHHH-hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHh
Confidence 346666665553211 1125899999998764422 2344455555444334446668887653 444444443
No 226
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.85 E-value=0.008 Score=59.52 Aligned_cols=48 Identities=13% Similarity=0.138 Sum_probs=25.9
Q ss_pred CCccEEEEechhhhcccC-ChHHHHHHHhhC-CCCccEEEEEeecChHHH
Q psy9399 171 SHLQILVLDEADRMLDMG-FINDIEKIVDAT-PVTRQTMLFSATLDGIVG 218 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~~~~-~~~~~~~~~~~~-~~~~~~i~~SAT~~~~~~ 218 (453)
.+++++++||+|.+.... ....+..++..+ ....++++.|..++..+.
T Consensus 210 ~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~ 259 (450)
T PRK00149 210 RSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELP 259 (450)
T ss_pred hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH
Confidence 467899999999876432 122333333332 233455555544444433
No 227
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.85 E-value=0.013 Score=55.07 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=18.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhhh
Q psy9399 38 GRDLIVSSQTGSGKTAAFMLPALHKFA 64 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~l~~~~~~l~ 64 (453)
+.++++.||||+|||..+. ++...+.
T Consensus 183 ~~~Lll~G~~GtGKThLa~-aIa~~l~ 208 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSN-CIAKELL 208 (329)
T ss_pred CCcEEEECCCCCcHHHHHH-HHHHHHH
Confidence 4679999999999998443 3333333
No 228
>PRK08727 hypothetical protein; Validated
Probab=96.81 E-value=0.0065 Score=54.33 Aligned_cols=17 Identities=35% Similarity=0.429 Sum_probs=14.2
Q ss_pred cEEEEcCCCchHHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAFM 56 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~l 56 (453)
.+++.||+|+|||....
T Consensus 43 ~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 43 WLYLSGPAGTGKTHLAL 59 (233)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 49999999999997433
No 229
>PRK06893 DNA replication initiation factor; Validated
Probab=96.81 E-value=0.0062 Score=54.32 Aligned_cols=44 Identities=14% Similarity=0.218 Sum_probs=26.7
Q ss_pred CCccEEEEechhhhccc-CChHHHHHHHhhCCC-CccEEEEEeecC
Q psy9399 171 SHLQILVLDEADRMLDM-GFINDIEKIVDATPV-TRQTMLFSATLD 214 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~~~-~~~~~~~~~~~~~~~-~~~~i~~SAT~~ 214 (453)
.+.+++++||+|.+... .+...+..++..... ..+++++|++.+
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~ 135 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCS 135 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 46789999999987532 233344444544433 345667777654
No 230
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.81 E-value=0.0069 Score=62.97 Aligned_cols=70 Identities=19% Similarity=0.114 Sum_probs=54.0
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEE
Q psy9399 23 KPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLV 102 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 102 (453)
.+++-|.+++.. ...+++|.|+.|||||.+...-+...+.... -...++|+
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~---------------------------v~p~~IL~ 52 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG---------------------------YQARHIAA 52 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC---------------------------CCHHHeee
Confidence 478999999875 3467999999999999976666665554311 12348999
Q ss_pred EcCcHHHHHHHHHHHHHHh
Q psy9399 103 LTPTRELALQVTAATERYG 121 (453)
Q Consensus 103 l~P~~~L~~q~~~~~~~~~ 121 (453)
++.|+..+.++.+++....
T Consensus 53 lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 53 VTFTNKAAREMKERVAQTL 71 (672)
T ss_pred EechHHHHHHHHHHHHHHh
Confidence 9999999999999888764
No 231
>PRK05642 DNA replication initiation factor; Validated
Probab=96.81 E-value=0.0083 Score=53.66 Aligned_cols=45 Identities=11% Similarity=0.276 Sum_probs=27.9
Q ss_pred CCCccEEEEechhhhccc-CChHHHHHHHhhCCCCccEEEEEeecC
Q psy9399 170 FSHLQILVLDEADRMLDM-GFINDIEKIVDATPVTRQTMLFSATLD 214 (453)
Q Consensus 170 ~~~~~~iIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~~SAT~~ 214 (453)
+..++++|+|++|.+... .+...+..++..+......++++++.+
T Consensus 95 ~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~ 140 (234)
T PRK05642 95 LEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKS 140 (234)
T ss_pred hhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCC
Confidence 345689999999977543 234556666665544334556666543
No 232
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.80 E-value=0.036 Score=47.94 Aligned_cols=47 Identities=19% Similarity=0.347 Sum_probs=33.1
Q ss_pred CCccEEEEechhhhc-ccCChHHHHHHHhhCCCCccEEEEEeecChHH
Q psy9399 171 SHLQILVLDEADRML-DMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~-~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~ 217 (453)
+++++|+||-+-+.. +......+..+........-++.+|||.....
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~ 129 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQED 129 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHH
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHH
Confidence 468899999987654 23345677777777766667899999986543
No 233
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=96.79 E-value=0.005 Score=51.87 Aligned_cols=103 Identities=18% Similarity=0.300 Sum_probs=62.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy9399 41 LIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120 (453)
Q Consensus 41 ~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 120 (453)
.++.+|+.||||...+..+..... .+.++++..|...-- +
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~~-------------------------------~g~~v~vfkp~iD~R---------~ 46 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYKE-------------------------------AGMKVLVFKPAIDTR---------Y 46 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHHHH-------------------------------cCCeEEEEecccccc---------c
Confidence 689999999999855444444322 256899999873221 1
Q ss_pred hcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhC
Q psy9399 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDAT 200 (453)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~ 200 (453)
+ ...+.-..|.. ..-++|-.+..++..+...... ..+++|.+||+|-+ +......+..+.+.+
T Consensus 47 ~-----~~~V~Sr~G~~----------~~A~~i~~~~~i~~~i~~~~~~-~~~~~v~IDEaQF~-~~~~v~~l~~lad~l 109 (201)
T COG1435 47 G-----VGKVSSRIGLS----------SEAVVIPSDTDIFDEIAALHEK-PPVDCVLIDEAQFF-DEELVYVLNELADRL 109 (201)
T ss_pred c-----cceeeeccCCc----------ccceecCChHHHHHHHHhcccC-CCcCEEEEehhHhC-CHHHHHHHHHHHhhc
Confidence 1 11122222222 2356677777788877654322 22899999999954 444556666666654
No 234
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.78 E-value=0.0077 Score=59.29 Aligned_cols=48 Identities=10% Similarity=0.088 Sum_probs=27.1
Q ss_pred CCCccEEEEechhhhcccC-ChHHHHHHHhhC-CCCccEEEEEeecChHH
Q psy9399 170 FSHLQILVLDEADRMLDMG-FINDIEKIVDAT-PVTRQTMLFSATLDGIV 217 (453)
Q Consensus 170 ~~~~~~iIiDE~h~~~~~~-~~~~~~~~~~~~-~~~~~~i~~SAT~~~~~ 217 (453)
+.+++++|+||+|.+.... ....+..++..+ ....|+|+.|-.+|..+
T Consensus 204 ~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 204 ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred hccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 4578899999999876432 233444444433 23345555555444333
No 235
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.78 E-value=0.015 Score=60.25 Aligned_cols=75 Identities=21% Similarity=0.225 Sum_probs=55.0
Q ss_pred hCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCC
Q psy9399 18 KVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ 97 (453)
Q Consensus 18 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (453)
...-..+++-|.+|+-. ...+++|.|..|||||.+...-+...+.... ...
T Consensus 191 ~~e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~---------------------------~~~ 241 (684)
T PRK11054 191 QVESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQ---------------------------AQP 241 (684)
T ss_pred hccCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCC---------------------------CCH
Confidence 33334699999999864 3356899999999999876555555443321 124
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHHh
Q psy9399 98 PRMLVLTPTRELALQVTAATERYG 121 (453)
Q Consensus 98 ~~~lil~P~~~L~~q~~~~~~~~~ 121 (453)
.++++++.++..+..+.+++....
T Consensus 242 ~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 242 EQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred HHeEEEeccHHHHHHHHHHHHHhc
Confidence 489999999999999988887654
No 236
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.75 E-value=0.017 Score=54.39 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=27.2
Q ss_pred CccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEe
Q psy9399 172 HLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSA 211 (453)
Q Consensus 172 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 211 (453)
..++||+||+|.+........+..+++..+...++|+.+.
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n 139 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITAN 139 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 4679999999988443344556666776666666666553
No 237
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.73 E-value=0.0063 Score=52.37 Aligned_cols=49 Identities=22% Similarity=0.213 Sum_probs=33.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy9399 41 LIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120 (453)
Q Consensus 41 ~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 120 (453)
++|.||+|+|||...+-.+...+.. +.+++|+... +-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~-------------------------------g~~v~~~s~e-~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR-------------------------------GEPGLYVTLE-ESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC-------------------------------CCcEEEEECC-CCHHHHHHHHHHc
Confidence 6899999999998766666655433 4578877654 5556666666655
Q ss_pred h
Q psy9399 121 G 121 (453)
Q Consensus 121 ~ 121 (453)
+
T Consensus 50 g 50 (187)
T cd01124 50 G 50 (187)
T ss_pred C
Confidence 4
No 238
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.70 E-value=0.044 Score=45.61 Aligned_cols=20 Identities=45% Similarity=0.541 Sum_probs=15.0
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q psy9399 41 LIVSSQTGSGKTAAFMLPAL 60 (453)
Q Consensus 41 ~lv~a~TGsGKT~~~l~~~~ 60 (453)
+++.|++|+|||......+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~ 21 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLAL 21 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHH
Confidence 68999999999985444333
No 239
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=96.69 E-value=0.0085 Score=59.92 Aligned_cols=91 Identities=25% Similarity=0.283 Sum_probs=75.5
Q ss_pred HHHHHHHHHhhCCCCcEEEEeccc----hhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEe-CCcc
Q psy9399 256 KNRLLDYLLRDKRVGQAVVFTATK----RDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVAT-DVAA 330 (453)
Q Consensus 256 ~~~~~~~l~~~~~~~~~lvf~~~~----~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T-~~~~ 330 (453)
....+..+..-..+.++.+..+|- .+.+.+.+.|...|+.+.++.|.+....|.++++...+|+++++|+| ..+.
T Consensus 298 vVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ 377 (677)
T COG1200 298 VVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ 377 (677)
T ss_pred HHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh
Confidence 334455555557778999999995 45566667777789999999999999999999999999999999999 6778
Q ss_pred cCCCCCCCcEEEEcCC
Q psy9399 331 RGIDVPAITHVFNYDL 346 (453)
Q Consensus 331 ~Gvdi~~~~~Vi~~~~ 346 (453)
..+++.++..||....
T Consensus 378 d~V~F~~LgLVIiDEQ 393 (677)
T COG1200 378 DKVEFHNLGLVIIDEQ 393 (677)
T ss_pred cceeecceeEEEEecc
Confidence 8999999999887554
No 240
>KOG0298|consensus
Probab=96.68 E-value=0.0057 Score=64.78 Aligned_cols=159 Identities=14% Similarity=0.072 Sum_probs=87.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHH
Q psy9399 38 GRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAAT 117 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 117 (453)
|+.+++.-..|+|||..-+...+...-..... .-.....+... ...-+.+|||||. ++..||.+++
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~------------~cS~~~~e~~n-~~~tgaTLII~P~-aIl~QW~~EI 439 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPS------------CCSELVKEGEN-LVETGATLIICPN-AILMQWFEEI 439 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchh------------hhhHHHhcccc-eeecCceEEECcH-HHHHHHHHHH
Confidence 35578888999999987766655432211100 00000001111 1234478999998 7779999999
Q ss_pred HHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCC--C----------------CCCCc--cEEE
Q psy9399 118 ERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGK--I----------------NFSHL--QILV 177 (453)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~--~----------------~~~~~--~~iI 177 (453)
.+..... +++..+.|-....-......-.+|||+||++.|...+.... . ++-.+ =-|+
T Consensus 440 ~kH~~~~--lKv~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIc 517 (1394)
T KOG0298|consen 440 HKHISSL--LKVLLYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRIC 517 (1394)
T ss_pred HHhcccc--ceEEEEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHh
Confidence 9876532 45555544322111111112368999999999977653321 0 01111 1389
Q ss_pred EechhhhcccCChHHHHHHHhhCCCCccEEEEEeecCh
Q psy9399 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDG 215 (453)
Q Consensus 178 iDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~ 215 (453)
+|||+++.... .....+...++. ...=++|+||-.
T Consensus 518 lDEaQMvesss--S~~a~M~~rL~~-in~W~VTGTPiq 552 (1394)
T KOG0298|consen 518 LDEAQMVESSS--SAAAEMVRRLHA-INRWCVTGTPIQ 552 (1394)
T ss_pred hhHHHhhcchH--HHHHHHHHHhhh-hceeeecCCchh
Confidence 99999876532 222222223322 236889999743
No 241
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.67 E-value=0.0091 Score=62.80 Aligned_cols=72 Identities=18% Similarity=0.166 Sum_probs=54.9
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEE
Q psy9399 22 TKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRML 101 (453)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 101 (453)
..+++-|.+++.. ...+++|.|..|||||.+...-+...+.... -...++|
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~---------------------------v~p~~IL 53 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVEN---------------------------ASPHSIM 53 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCC---------------------------CCHHHeE
Confidence 4689999999865 3467999999999999876555555443311 1234899
Q ss_pred EEcCcHHHHHHHHHHHHHHhc
Q psy9399 102 VLTPTRELALQVTAATERYGL 122 (453)
Q Consensus 102 il~P~~~L~~q~~~~~~~~~~ 122 (453)
+++.|+..+.++.+++.++..
T Consensus 54 ~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 54 AVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred eeeccHHHHHHHHHHHHHHhc
Confidence 999999999999999988753
No 242
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.66 E-value=0.013 Score=57.23 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=17.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhhh
Q psy9399 40 DLIVSSQTGSGKTAAFMLPALHKFA 64 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~l~~~~~~l~ 64 (453)
.+++.||+|+|||... ..+...+.
T Consensus 138 ~l~l~G~~G~GKThL~-~ai~~~l~ 161 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLL-HAIGNEIL 161 (405)
T ss_pred eEEEECCCCCcHHHHH-HHHHHHHH
Confidence 4899999999999843 44444443
No 243
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.64 E-value=0.018 Score=48.21 Aligned_cols=50 Identities=18% Similarity=0.394 Sum_probs=35.3
Q ss_pred CCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHH
Q psy9399 171 SHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMA 221 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~ 221 (453)
...+++||||+|.|.... ...+.+.++.-+....++++|..+...+..+.
T Consensus 101 ~~~KviiI~~ad~l~~~a-~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~ 150 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEA-QNALLKTLEEPPENTYFILITNNPSKILPTIR 150 (162)
T ss_dssp SSSEEEEEETGGGS-HHH-HHHHHHHHHSTTTTEEEEEEES-GGGS-HHHH
T ss_pred CCceEEEeehHhhhhHHH-HHHHHHHhcCCCCCEEEEEEECChHHChHHHH
Confidence 568999999999886554 56677777777788888888877665444443
No 244
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.63 E-value=0.034 Score=54.24 Aligned_cols=66 Identities=14% Similarity=0.282 Sum_probs=36.0
Q ss_pred eChHHHHHHHhcCCCCCCCccEEEEechhhhcc-cCChHHHHHHHh-hCCCCccEEEEEeecCh-HHHHHHHh
Q psy9399 154 ATPGRLIDHMNSGKINFSHLQILVLDEADRMLD-MGFINDIEKIVD-ATPVTRQTMLFSATLDG-IVGNMAEN 223 (453)
Q Consensus 154 ~T~~~l~~~l~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~~~~-~~~~~~~~i~~SAT~~~-~~~~~~~~ 223 (453)
.++..+...+.. +.++++||||.+-+... ......+..++. .......++.++||... .+......
T Consensus 285 ~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~ 353 (424)
T PRK05703 285 YDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKH 353 (424)
T ss_pred CCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHH
Confidence 344445444442 34689999999865332 223344555555 22223457888998764 34444443
No 245
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.52 E-value=0.023 Score=57.33 Aligned_cols=44 Identities=16% Similarity=0.340 Sum_probs=28.9
Q ss_pred CCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecC
Q psy9399 170 FSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLD 214 (453)
Q Consensus 170 ~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 214 (453)
..+++++||||+|+|....+ +.+.+.++.-+.+..+|+.|.-+.
T Consensus 122 ~gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILaTtep~ 165 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILATTDPQ 165 (700)
T ss_pred cCCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEEeCChH
Confidence 35688999999999876554 344445555455666666665443
No 246
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.52 E-value=0.013 Score=61.59 Aligned_cols=72 Identities=18% Similarity=0.176 Sum_probs=54.8
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEE
Q psy9399 22 TKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRML 101 (453)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 101 (453)
..+++-|.+++... ..+++|.|..|||||.+...-+...+.... -...++|
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~---------------------------v~p~~IL 58 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVEN---------------------------ASPYSIM 58 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCC---------------------------CChhHeE
Confidence 35899999998753 467999999999999876555555443211 1234899
Q ss_pred EEcCcHHHHHHHHHHHHHHhc
Q psy9399 102 VLTPTRELALQVTAATERYGL 122 (453)
Q Consensus 102 il~P~~~L~~q~~~~~~~~~~ 122 (453)
+++-|+..+.++.+++.++..
T Consensus 59 ~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 59 AVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred eeeccHHHHHHHHHHHHHHhc
Confidence 999999999999999988653
No 247
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.51 E-value=0.015 Score=58.51 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=28.5
Q ss_pred CCCccEEEEechhhhcccC-ChHHHHHHHhhCCC-CccEEEEEeecChHH
Q psy9399 170 FSHLQILVLDEADRMLDMG-FINDIEKIVDATPV-TRQTMLFSATLDGIV 217 (453)
Q Consensus 170 ~~~~~~iIiDE~h~~~~~~-~~~~~~~~~~~~~~-~~~~i~~SAT~~~~~ 217 (453)
+.++++||||++|.+.... ....+..++..+.. ..++|+.|-..+..+
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL 424 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQL 424 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhh
Confidence 4568999999999876543 23344444444333 456666555554443
No 248
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.50 E-value=0.02 Score=51.27 Aligned_cols=18 Identities=17% Similarity=0.327 Sum_probs=15.0
Q ss_pred CcEEEEcCCCchHHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAFM 56 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l 56 (453)
..++++||+|+|||....
T Consensus 46 ~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 469999999999997443
No 249
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.48 E-value=0.016 Score=52.28 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=19.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhhhc
Q psy9399 41 LIVSSQTGSGKTAAFMLPALHKFASS 66 (453)
Q Consensus 41 ~lv~a~TGsGKT~~~l~~~~~~l~~~ 66 (453)
++|.||||||||. -+..++..+.+.
T Consensus 128 ILVTGpTGSGKST-TlAamId~iN~~ 152 (353)
T COG2805 128 ILVTGPTGSGKST-TLAAMIDYINKH 152 (353)
T ss_pred EEEeCCCCCcHHH-HHHHHHHHHhcc
Confidence 9999999999997 466677766653
No 250
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.47 E-value=0.015 Score=51.72 Aligned_cols=20 Identities=30% Similarity=0.394 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q psy9399 38 GRDLIVSSQTGSGKTAAFML 57 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~l~ 57 (453)
+..+++.||+|+|||..+..
T Consensus 38 ~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 35699999999999975433
No 251
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.46 E-value=0.019 Score=60.11 Aligned_cols=69 Identities=16% Similarity=0.075 Sum_probs=53.1
Q ss_pred CcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEE
Q psy9399 24 PTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVL 103 (453)
Q Consensus 24 ~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 103 (453)
+++-|.+++.. ...+++|.|..|||||.+...-+...+.... ....+++++
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~---------------------------~~p~~IL~v 52 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCG---------------------------YKARNIAAV 52 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC---------------------------CCHHHeEEE
Confidence 78899998865 3467999999999999976666666554311 123479999
Q ss_pred cCcHHHHHHHHHHHHHHh
Q psy9399 104 TPTRELALQVTAATERYG 121 (453)
Q Consensus 104 ~P~~~L~~q~~~~~~~~~ 121 (453)
+.|+..+.++.+.+.+..
T Consensus 53 TFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 53 TFTNKAAREMKERVAKTL 70 (664)
T ss_pred eccHHHHHHHHHHHHHHh
Confidence 999999999999887754
No 252
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.44 E-value=0.033 Score=51.96 Aligned_cols=44 Identities=30% Similarity=0.393 Sum_probs=33.2
Q ss_pred CCCcHHHHHHHHHHh----cCC---cEEEEcCCCchHHHHHHHHHHHhhhh
Q psy9399 22 TKPTGVQEQAIPAAI----SGR---DLIVSSQTGSGKTAAFMLPALHKFAS 65 (453)
Q Consensus 22 ~~~~~~Q~~~~~~~~----~~~---~~lv~a~TGsGKT~~~l~~~~~~l~~ 65 (453)
..++|||..++..+. .++ -.++.||.|+||+..+...+...+..
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~ 53 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLAS 53 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCC
Confidence 457899999888866 332 38899999999998776666665554
No 253
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.43 E-value=0.022 Score=57.00 Aligned_cols=39 Identities=18% Similarity=0.396 Sum_probs=27.7
Q ss_pred CCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEE
Q psy9399 171 SHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFS 210 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 210 (453)
.+++++||||+|+|....+ ..+.+.++.-|....+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4688999999999876553 44555666666666666655
No 254
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.42 E-value=0.0095 Score=53.10 Aligned_cols=86 Identities=26% Similarity=0.390 Sum_probs=64.1
Q ss_pred CCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCC-chHHHHHHhcC-CCCEEEeChHHHHHHHhcCCCCCCC
Q psy9399 95 PAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGM-PYLRQMQLLSR-NPEILLATPGRLIDHMNSGKINFSH 172 (453)
Q Consensus 95 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~Ilv~T~~~l~~~l~~~~~~~~~ 172 (453)
.+.+.+|||+.+---+..+.+.++.+.. ....++-++.-. ...++...+.. ..+|.||||+++..++..+.+.+++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~--k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~ 201 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKG--KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSN 201 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhcc--CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCccc
Confidence 3567899999997777888888877631 112333444433 44555555553 6789999999999999999999999
Q ss_pred ccEEEEechh
Q psy9399 173 LQILVLDEAD 182 (453)
Q Consensus 173 ~~~iIiDE~h 182 (453)
+..||+|--|
T Consensus 202 l~~ivlD~s~ 211 (252)
T PF14617_consen 202 LKRIVLDWSY 211 (252)
T ss_pred CeEEEEcCCc
Confidence 9999999877
No 255
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.41 E-value=0.018 Score=59.99 Aligned_cols=103 Identities=20% Similarity=0.173 Sum_probs=77.7
Q ss_pred EEEEEEcchhhHHHHH--HHHHhhCCCCcEEEEeccchhHHHHHHHHhh----CCCceeecCCCCCHHHHHHHHHHHhcC
Q psy9399 245 QSILFVDDILHKNRLL--DYLLRDKRVGQAVVFTATKRDADIIADRLNI----SGFLAAPLHGDLHQNARNRTLENLRRG 318 (453)
Q Consensus 245 ~~~~~~~~~~~~~~~~--~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g 318 (453)
..+...+..+-|..+. ..+..-..+.++++.++|+.-|...++.++. .++.+..++|+++..+|..+++.+.+|
T Consensus 284 ~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g 363 (681)
T PRK10917 284 NRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASG 363 (681)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCC
Confidence 3455555555554432 2222224567899999999999888877764 468899999999999999999999999
Q ss_pred CccEEEEe-CCcccCCCCCCCcEEEEcCCC
Q psy9399 319 RIKILVAT-DVAARGIDVPAITHVFNYDLP 347 (453)
Q Consensus 319 ~~~vLv~T-~~~~~Gvdi~~~~~Vi~~~~~ 347 (453)
+.+|+|+| ..+...+.++++.+||.....
T Consensus 364 ~~~IvVgT~~ll~~~v~~~~l~lvVIDE~H 393 (681)
T PRK10917 364 EADIVIGTHALIQDDVEFHNLGLVIIDEQH 393 (681)
T ss_pred CCCEEEchHHHhcccchhcccceEEEechh
Confidence 99999999 456667888899998875543
No 256
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.41 E-value=0.032 Score=54.87 Aligned_cols=49 Identities=8% Similarity=0.207 Sum_probs=26.2
Q ss_pred CccEEEEechhhhcccC-ChHHHHHHHhhC-CCCccEEEEEeecChHHHHH
Q psy9399 172 HLQILVLDEADRMLDMG-FINDIEKIVDAT-PVTRQTMLFSATLDGIVGNM 220 (453)
Q Consensus 172 ~~~~iIiDE~h~~~~~~-~~~~~~~~~~~~-~~~~~~i~~SAT~~~~~~~~ 220 (453)
.++++++||+|.+.+.. ....+..++..+ ....++|+.|-..+..+..+
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l 244 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEF 244 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHH
Confidence 57899999999876543 122333333332 23345555554444444433
No 257
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.38 E-value=0.049 Score=61.65 Aligned_cols=64 Identities=20% Similarity=0.252 Sum_probs=45.2
Q ss_pred CCcHHHHHHHHHHhcCC--cEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceE
Q psy9399 23 KPTGVQEQAIPAAISGR--DLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRM 100 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~~~~--~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (453)
.+++.|.+|+..++.+. -++|.|..|+|||.+ +-.+...+..-. ...+.++
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l~--------------------------~~~~~~V 1019 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTLP--------------------------ESERPRV 1019 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHhh--------------------------cccCceE
Confidence 68999999999999764 499999999999974 444444332100 1124478
Q ss_pred EEEcCcHHHHHHH
Q psy9399 101 LVLTPTRELALQV 113 (453)
Q Consensus 101 lil~P~~~L~~q~ 113 (453)
+.+.||-.-+..+
T Consensus 1020 ~glAPTgrAAk~L 1032 (1747)
T PRK13709 1020 VGLGPTHRAVGEM 1032 (1747)
T ss_pred EEECCcHHHHHHH
Confidence 8899997766554
No 258
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.38 E-value=0.059 Score=56.11 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=16.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhh
Q psy9399 41 LIVSSQTGSGKTAAFMLPALHKFA 64 (453)
Q Consensus 41 ~lv~a~TGsGKT~~~l~~~~~~l~ 64 (453)
++|.|+||+|||.+.... +..+.
T Consensus 784 LYIyG~PGTGKTATVK~V-LrELq 806 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYSV-IQLLQ 806 (1164)
T ss_pred EEEECCCCCCHHHHHHHH-HHHHH
Confidence 469999999999865443 34443
No 259
>PTZ00293 thymidine kinase; Provisional
Probab=96.34 E-value=0.036 Score=48.05 Aligned_cols=24 Identities=21% Similarity=0.070 Sum_probs=16.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHh
Q psy9399 39 RDLIVSSQTGSGKTAAFMLPALHK 62 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~~~~~~ 62 (453)
.=.++.||++||||.-.+..+...
T Consensus 5 ~i~vi~GpMfSGKTteLLr~i~~y 28 (211)
T PTZ00293 5 TISVIIGPMFSGKTTELMRLVKRF 28 (211)
T ss_pred EEEEEECCCCChHHHHHHHHHHHH
Confidence 336889999999997544444443
No 260
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.32 E-value=0.019 Score=57.25 Aligned_cols=148 Identities=15% Similarity=0.168 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhc-----C----CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCC
Q psy9399 26 GVQEQAIPAAIS-----G----RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPA 96 (453)
Q Consensus 26 ~~Q~~~~~~~~~-----~----~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (453)
|||+-++..++. + +.+++.-|=|.|||......++..+.-. ...
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~---------------------------g~~ 53 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD---------------------------GEP 53 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC---------------------------Ccc
Confidence 688888877762 2 2489999999999975544444333321 223
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcC--CCCCCCcc
Q psy9399 97 QPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSG--KINFSHLQ 174 (453)
Q Consensus 97 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~--~~~~~~~~ 174 (453)
+..+++..+++.-+..+++.+..+....+.+.... . .. ... .....|.....+.++..+... ...-.+.+
T Consensus 54 ~~~i~~~A~~~~QA~~~f~~~~~~i~~~~~l~~~~--~-~~---~~~--~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~ 125 (477)
T PF03354_consen 54 GAEIYCAANTRDQAKIVFDEAKKMIEASPELRKRK--K-PK---IIK--SNKKEIEFPKTGSFFKALSSDADSLDGLNPS 125 (477)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHHhChhhccch--h-hh---hhh--hhceEEEEcCCCcEEEEEecCCCCccCCCCc
Confidence 56899999999999999998888765433222100 0 00 000 001123332223332222221 12234678
Q ss_pred EEEEechhhhcccCChHHHHHHHhhCCCCccEEEE
Q psy9399 175 ILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLF 209 (453)
Q Consensus 175 ~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~ 209 (453)
++|+||+|.+.+......+..-....+++ +++.+
T Consensus 126 ~~i~DE~h~~~~~~~~~~l~~g~~~r~~p-l~~~I 159 (477)
T PF03354_consen 126 LAIFDELHAHKDDELYDALESGMGARPNP-LIIII 159 (477)
T ss_pred eEEEeCCCCCCCHHHHHHHHhhhccCCCc-eEEEE
Confidence 99999999887755445544444443333 34444
No 261
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.31 E-value=0.029 Score=55.11 Aligned_cols=48 Identities=6% Similarity=0.100 Sum_probs=28.0
Q ss_pred CCccEEEEechhhhcccC-ChHHHHHHHhhC-CCCccEEEEEeecChHHH
Q psy9399 171 SHLQILVLDEADRMLDMG-FINDIEKIVDAT-PVTRQTMLFSATLDGIVG 218 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~~~~-~~~~~~~~~~~~-~~~~~~i~~SAT~~~~~~ 218 (453)
..++++++||+|.+.... ....+..++..+ ....++|+.|-+.+..+.
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~ 250 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLK 250 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHh
Confidence 568899999999876543 233344444332 234556666655555444
No 262
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.30 E-value=0.023 Score=50.61 Aligned_cols=43 Identities=12% Similarity=0.236 Sum_probs=24.7
Q ss_pred CCccEEEEechhhhcccCChHHHHHHHhhCCCCcc-EEEEEeecC
Q psy9399 171 SHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQ-TMLFSATLD 214 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~-~i~~SAT~~ 214 (453)
...+++|+||+|.+.... ...+..++........ +++++++.+
T Consensus 89 ~~~~~liiDdi~~l~~~~-~~~L~~~~~~~~~~~~~~vl~~~~~~ 132 (227)
T PRK08903 89 PEAELYAVDDVERLDDAQ-QIALFNLFNRVRAHGQGALLVAGPAA 132 (227)
T ss_pred ccCCEEEEeChhhcCchH-HHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 346799999999875433 3334444443332323 466666643
No 263
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.30 E-value=0.033 Score=52.95 Aligned_cols=40 Identities=13% Similarity=0.288 Sum_probs=25.5
Q ss_pred CCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEe
Q psy9399 171 SHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSA 211 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 211 (453)
...++||+||+|.+.... ...+..+++..+...++|+++.
T Consensus 124 ~~~~vlilDe~~~l~~~~-~~~L~~~le~~~~~~~~Il~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALREDA-QQALRRIMEQYSRTCRFIIATR 163 (337)
T ss_pred CCCcEEEEeCcccCCHHH-HHHHHHHHHhccCCCeEEEEeC
Confidence 556899999999875432 3445555555555565655443
No 264
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.30 E-value=0.06 Score=49.63 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=16.1
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAFMLPAL 60 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~l~~~~ 60 (453)
.+++.||||+|||.+....+.
T Consensus 196 vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999986544443
No 265
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.30 E-value=0.044 Score=61.25 Aligned_cols=32 Identities=31% Similarity=0.292 Sum_probs=28.5
Q ss_pred CCcHHHHHHHHHHhcC--CcEEEEcCCCchHHHH
Q psy9399 23 KPTGVQEQAIPAAISG--RDLIVSSQTGSGKTAA 54 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~~~--~~~lv~a~TGsGKT~~ 54 (453)
.+++.|.+|+..++.. +-++|.|..|+|||.+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~ 868 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQ 868 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHH
Confidence 6899999999999965 4599999999999975
No 266
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.27 E-value=0.012 Score=57.51 Aligned_cols=22 Identities=27% Similarity=0.218 Sum_probs=17.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q psy9399 41 LIVSSQTGSGKTAAFMLPALHK 62 (453)
Q Consensus 41 ~lv~a~TGsGKT~~~l~~~~~~ 62 (453)
.+++||.|+|||.++.+.+...
T Consensus 43 ~Lf~GP~GtGKTTlAriLAk~L 64 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILAKRL 64 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 7999999999998766655543
No 267
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.24 E-value=0.035 Score=54.07 Aligned_cols=24 Identities=17% Similarity=0.450 Sum_probs=17.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhh
Q psy9399 39 RDLIVSSQTGSGKTAAFMLPALHKF 63 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~~~~~~l 63 (453)
.+++|.||+|+|||.+ +..+...+
T Consensus 56 ~~~lI~G~~GtGKT~l-~~~v~~~l 79 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT-VKKVFEEL 79 (394)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHH
Confidence 4599999999999974 33344443
No 268
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.23 E-value=0.028 Score=52.72 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=15.3
Q ss_pred CcEEEEcCCCchHHHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAFML 57 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~ 57 (453)
.+.+++||+|+|||..+-+
T Consensus 49 ~SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 49 HSMILWGPPGTGKTTLARL 67 (436)
T ss_pred ceeEEECCCCCCHHHHHHH
Confidence 3599999999999975433
No 269
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.22 E-value=0.036 Score=56.97 Aligned_cols=41 Identities=17% Similarity=0.401 Sum_probs=26.7
Q ss_pred CCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEee
Q psy9399 171 SHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSAT 212 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 212 (453)
.+++++||||+|+|....+ ..+.+.++.-+.+..+|+.|--
T Consensus 118 gr~KVIIIDEah~LT~~A~-NALLKtLEEPP~~v~FILaTtd 158 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAF-NAMLKTLEEPPPHVKFILATTD 158 (830)
T ss_pred CCceEEEEeChhhCCHHHH-HHHHHHHHhcCCCeEEEEEECC
Confidence 4678999999999876553 3444455555555555555543
No 270
>PLN03025 replication factor C subunit; Provisional
Probab=96.20 E-value=0.065 Score=50.48 Aligned_cols=39 Identities=23% Similarity=0.299 Sum_probs=25.5
Q ss_pred CccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEe
Q psy9399 172 HLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSA 211 (453)
Q Consensus 172 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 211 (453)
..+++|+||+|.+.... ...+...++..+..+.+++.+-
T Consensus 99 ~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~il~~n 137 (319)
T PLN03025 99 RHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFALACN 137 (319)
T ss_pred CeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEEEEeC
Confidence 57899999999986543 3445555665555555555443
No 271
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.20 E-value=0.047 Score=43.66 Aligned_cols=16 Identities=25% Similarity=0.486 Sum_probs=13.3
Q ss_pred ccEEEEechhhhcccC
Q psy9399 173 LQILVLDEADRMLDMG 188 (453)
Q Consensus 173 ~~~iIiDE~h~~~~~~ 188 (453)
..++++||+|.+....
T Consensus 59 ~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS 74 (132)
T ss_dssp SEEEEEETGGGTSHHC
T ss_pred ceeeeeccchhccccc
Confidence 5799999999887654
No 272
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=96.20 E-value=0.029 Score=62.53 Aligned_cols=123 Identities=20% Similarity=0.161 Sum_probs=78.5
Q ss_pred CcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEE
Q psy9399 24 PTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVL 103 (453)
Q Consensus 24 ~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 103 (453)
+|+-|++++.. .+++++|.|..|||||.+...-++..+..+. ...+++++
T Consensus 2 ~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~----------------------------~~~~il~~ 51 (1232)
T TIGR02785 2 WTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRGV----------------------------DIDRLLVV 51 (1232)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCC----------------------------CHhhEEEE
Confidence 68899999973 5778999999999999987777776665421 12379999
Q ss_pred cCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCC--ccEEEEech
Q psy9399 104 TPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSH--LQILVLDEA 181 (453)
Q Consensus 104 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~--~~~iIiDE~ 181 (453)
+=|+..+.++.+++.+.....-.-.. .. ....+.+..-...-|+|...++..+-+.....-. ...=|.||.
T Consensus 52 tFt~~aa~e~~~ri~~~l~~~~~~~p----~~---~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~ 124 (1232)
T TIGR02785 52 TFTNAAAREMKERIEEALQKALQQEP----NS---KHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDT 124 (1232)
T ss_pred eccHHHHHHHHHHHHHHHHHHHhcCc----hh---HHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHH
Confidence 99999999988887764321100000 10 1111222223456799999987766554422211 234568887
Q ss_pred hh
Q psy9399 182 DR 183 (453)
Q Consensus 182 h~ 183 (453)
..
T Consensus 125 e~ 126 (1232)
T TIGR02785 125 EQ 126 (1232)
T ss_pred HH
Confidence 74
No 273
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.18 E-value=0.029 Score=51.49 Aligned_cols=52 Identities=25% Similarity=0.183 Sum_probs=31.4
Q ss_pred HHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHh
Q psy9399 11 LVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62 (453)
Q Consensus 11 ~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~ 62 (453)
++.++|...++....+.--+++--+..+.-+++.|++|+|||...+..+...
T Consensus 3 ~~~~~~~~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 3 EIREALSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDL 54 (271)
T ss_pred hhhccccccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4556666444443333323333345566779999999999997555444443
No 274
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.18 E-value=0.063 Score=53.05 Aligned_cols=40 Identities=18% Similarity=0.339 Sum_probs=26.0
Q ss_pred CCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEE
Q psy9399 170 FSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFS 210 (453)
Q Consensus 170 ~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 210 (453)
..+++++||||+|++....+ ..+...++.-+....+|+.+
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred cCCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEEEEEe
Confidence 46789999999998876543 34444555545555555544
No 275
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.14 E-value=0.028 Score=53.70 Aligned_cols=47 Identities=15% Similarity=0.154 Sum_probs=30.7
Q ss_pred CccEEEEechhhhcccC-ChHHHHHHHhhCCCC-ccEEEEEeecChHHH
Q psy9399 172 HLQILVLDEADRMLDMG-FINDIEKIVDATPVT-RQTMLFSATLDGIVG 218 (453)
Q Consensus 172 ~~~~iIiDE~h~~~~~~-~~~~~~~~~~~~~~~-~~~i~~SAT~~~~~~ 218 (453)
+++++++|.+|.+.... ....+..++..+... .|+++.|..+|..+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 78899999999887553 345555555555433 467777766665443
No 276
>PHA02533 17 large terminase protein; Provisional
Probab=96.14 E-value=0.041 Score=55.25 Aligned_cols=124 Identities=12% Similarity=0.072 Sum_probs=73.9
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEE
Q psy9399 23 KPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLV 102 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 102 (453)
.|.++|.+.+..+..++-.++..+=..|||.+....++..+... .+..+++
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~-----------------------------~~~~v~i 109 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN-----------------------------KDKNVGI 109 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC-----------------------------CCCEEEE
Confidence 58899999998876666678999999999987665554433321 2448999
Q ss_pred EcCcHHHHHHHHHHHHHHhcccCCe-eEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEech
Q psy9399 103 LTPTRELALQVTAATERYGLYMKKI-KAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181 (453)
Q Consensus 103 l~P~~~L~~q~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~ 181 (453)
+.|+..-+..+.+.++......+.+ ........ ...-.+.++..|.+.|.+. ....-.+.+++|+||+
T Consensus 110 ~A~~~~QA~~vF~~ik~~ie~~P~l~~~~i~~~~----~~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~ 178 (534)
T PHA02533 110 LAHKASMAAEVLDRTKQAIELLPDFLQPGIVEWN----KGSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDEC 178 (534)
T ss_pred EeCCHHHHHHHHHHHHHHHHhCHHHhhcceeecC----ccEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEecc
Confidence 9999998888887777554332211 10000000 0001112344554444221 0011235678999999
Q ss_pred hhhcc
Q psy9399 182 DRMLD 186 (453)
Q Consensus 182 h~~~~ 186 (453)
|.+.+
T Consensus 179 a~~~~ 183 (534)
T PHA02533 179 AFIPN 183 (534)
T ss_pred ccCCC
Confidence 97654
No 277
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.13 E-value=0.059 Score=54.66 Aligned_cols=39 Identities=15% Similarity=0.373 Sum_probs=26.1
Q ss_pred CCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEE
Q psy9399 171 SHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFS 210 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 210 (453)
.+++++||||+|+|....+ ..+...++.-+....+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~~A~-NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSF-NALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhcCCCCcEEEEEE
Confidence 4678999999998876543 44555555555555566554
No 278
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.12 E-value=0.023 Score=52.99 Aligned_cols=47 Identities=30% Similarity=0.373 Sum_probs=31.8
Q ss_pred HHHhCCCCCCcHHHHHHHHHHh-cCCcEEEEcCCCchHHHHHHHHHHHhhh
Q psy9399 15 ALVKVGYTKPTGVQEQAIPAAI-SGRDLIVSSQTGSGKTAAFMLPALHKFA 64 (453)
Q Consensus 15 ~l~~~~~~~~~~~Q~~~~~~~~-~~~~~lv~a~TGsGKT~~~l~~~~~~l~ 64 (453)
.+...|. +++.|.+.+..+. .+.+++|+|+||||||. ++-.++..+.
T Consensus 122 ~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTT-ll~aL~~~i~ 169 (323)
T PRK13833 122 DYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTT-LANAVIAEIV 169 (323)
T ss_pred HHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHHHh
Confidence 3444454 5677776655544 55789999999999997 5555555543
No 279
>PRK09183 transposase/IS protein; Provisional
Probab=96.12 E-value=0.049 Score=49.45 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=19.1
Q ss_pred HhcCCcEEEEcCCCchHHHHHHHHH
Q psy9399 35 AISGRDLIVSSQTGSGKTAAFMLPA 59 (453)
Q Consensus 35 ~~~~~~~lv~a~TGsGKT~~~l~~~ 59 (453)
+..+.++++.||+|+|||..+...+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~ 123 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALG 123 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHH
Confidence 4466789999999999997554443
No 280
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=96.05 E-value=0.06 Score=55.72 Aligned_cols=102 Identities=21% Similarity=0.183 Sum_probs=77.2
Q ss_pred EEEEEcchhhHHHHH--HHHHhhCCCCcEEEEeccchhHHHHHHHHhh----CCCceeecCCCCCHHHHHHHHHHHhcCC
Q psy9399 246 SILFVDDILHKNRLL--DYLLRDKRVGQAVVFTATKRDADIIADRLNI----SGFLAAPLHGDLHQNARNRTLENLRRGR 319 (453)
Q Consensus 246 ~~~~~~~~~~~~~~~--~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 319 (453)
.++..+...-|..+. ..+..-..+.++++.++|+.-|...++.+++ .++.+..++|+++..+|..+++...+|+
T Consensus 259 ~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~ 338 (630)
T TIGR00643 259 RLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQ 338 (630)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCC
Confidence 345555555554432 2222224567999999999999988877764 4789999999999999999999999999
Q ss_pred ccEEEEe-CCcccCCCCCCCcEEEEcCCC
Q psy9399 320 IKILVAT-DVAARGIDVPAITHVFNYDLP 347 (453)
Q Consensus 320 ~~vLv~T-~~~~~Gvdi~~~~~Vi~~~~~ 347 (453)
.+|+|+| ..+...+++.++.+||.....
T Consensus 339 ~~IiVgT~~ll~~~~~~~~l~lvVIDEaH 367 (630)
T TIGR00643 339 IHLVVGTHALIQEKVEFKRLALVIIDEQH 367 (630)
T ss_pred CCEEEecHHHHhccccccccceEEEechh
Confidence 9999999 555667888889988865543
No 281
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.03 E-value=0.14 Score=46.49 Aligned_cols=54 Identities=9% Similarity=0.187 Sum_probs=32.9
Q ss_pred CCccEEEEechhhhc-ccCChHHHHHHHhhCCCCccEEEEEeecCh-HHHHHHHhh
Q psy9399 171 SHLQILVLDEADRML-DMGFINDIEKIVDATPVTRQTMLFSATLDG-IVGNMAENI 224 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~-~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~-~~~~~~~~~ 224 (453)
.+++++|+|-+=+.. +......+..++........++.+|||... ......+.+
T Consensus 153 ~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f 208 (270)
T PRK06731 153 ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNF 208 (270)
T ss_pred CCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHh
Confidence 468999999997654 233344555555554444457778998653 444554443
No 282
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.02 E-value=0.04 Score=55.81 Aligned_cols=40 Identities=28% Similarity=0.409 Sum_probs=27.7
Q ss_pred CCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEE
Q psy9399 170 FSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFS 210 (453)
Q Consensus 170 ~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 210 (453)
..+.+++||||+|+|.... ...+...++..+....+|+.+
T Consensus 116 ~~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred cCCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 3678899999999987654 344555566656666666655
No 283
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.00 E-value=0.037 Score=58.41 Aligned_cols=72 Identities=22% Similarity=0.216 Sum_probs=54.6
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEE
Q psy9399 22 TKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRML 101 (453)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 101 (453)
..+++-|.+++... ..+++|.|..|||||.+...-+...+.... -...++|
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~~---------------------------i~P~~IL 53 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEKN---------------------------VAPWNIL 53 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcCC---------------------------CCHHHee
Confidence 35899999999753 467999999999999876666655554321 1123799
Q ss_pred EEcCcHHHHHHHHHHHHHHhc
Q psy9399 102 VLTPTRELALQVTAATERYGL 122 (453)
Q Consensus 102 il~P~~~L~~q~~~~~~~~~~ 122 (453)
+++-|+..+..+.+.+.++..
T Consensus 54 ~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 54 AITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred eeeccHHHHHHHHHHHHHHhc
Confidence 999999999999998887643
No 284
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.97 E-value=0.066 Score=55.77 Aligned_cols=78 Identities=18% Similarity=0.194 Sum_probs=65.1
Q ss_pred CCCcEEEEeccchhHHHHHHHHhh-CCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCC
Q psy9399 268 RVGQAVVFTATKRDADIIADRLNI-SGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDL 346 (453)
Q Consensus 268 ~~~~~lvf~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~ 346 (453)
.+.++||.++++..+..+.+.|++ .+..+..+||+++..+|........+|+.+|+|+|.... -..++++.+||..+.
T Consensus 189 ~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~liVvDEe 267 (679)
T PRK05580 189 QGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCCEEEEECC
Confidence 356899999999999999999986 477899999999999999999999999999999996332 245667888776554
No 285
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.96 E-value=0.047 Score=57.62 Aligned_cols=39 Identities=28% Similarity=0.470 Sum_probs=29.0
Q ss_pred CCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEE
Q psy9399 171 SHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFS 210 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 210 (453)
.+++++||||+|+|.... ...+.++++..+....+|+++
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 578999999999987654 455666677667776667665
No 286
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=95.92 E-value=0.023 Score=57.55 Aligned_cols=128 Identities=16% Similarity=0.067 Sum_probs=77.4
Q ss_pred CCcHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceE
Q psy9399 23 KPTGVQEQAIPAAISG--RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRM 100 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~~~--~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (453)
..+|+|.+.+.++... +.+.+..++-+|||.+.+..+...+.. ....+
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~------------------------------~P~~~ 65 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQ------------------------------DPGPM 65 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEe------------------------------CCCCE
Confidence 5789999999998765 469999999999999666655554443 13479
Q ss_pred EEEcCcHHHHHHHH-HHHHHHhcccCCeeEEEEE--CCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEE
Q psy9399 101 LVLTPTRELALQVT-AATERYGLYMKKIKAISIL--GGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177 (453)
Q Consensus 101 lil~P~~~L~~q~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iI 177 (453)
+++.||..++..+. +.+..+....+.+...... ..............+..+.+...++-. .+.-..+++++
T Consensus 66 l~v~Pt~~~a~~~~~~rl~Pmi~~sp~l~~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~S~~------~l~s~~~r~~~ 139 (557)
T PF05876_consen 66 LYVQPTDDAAKDFSKERLDPMIRASPVLRRKLSPSKSRDSGNTILYKRFPGGFLYLVGANSPS------NLRSRPARYLL 139 (557)
T ss_pred EEEEEcHHHHHHHHHHHHHHHHHhCHHHHHHhCchhhcccCCchhheecCCCEEEEEeCCCCc------ccccCCcCEEE
Confidence 99999999998875 5666665544433321111 000000011111123334443321111 11235678999
Q ss_pred Eechhhhcc
Q psy9399 178 LDEADRMLD 186 (453)
Q Consensus 178 iDE~h~~~~ 186 (453)
+||++.+..
T Consensus 140 ~DEvD~~p~ 148 (557)
T PF05876_consen 140 LDEVDRYPD 148 (557)
T ss_pred Eechhhccc
Confidence 999999863
No 287
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.90 E-value=0.039 Score=50.29 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=15.9
Q ss_pred CcEEEEcCCCchHHHHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAFMLP 58 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~~ 58 (453)
.++++.||+|+|||.++-..
T Consensus 43 ~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHH
Confidence 35899999999999865433
No 288
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.90 E-value=0.069 Score=50.32 Aligned_cols=42 Identities=17% Similarity=0.047 Sum_probs=31.4
Q ss_pred CcHHHHHHHHHHhc--C---CcEEEEcCCCchHHHHHHHHHHHhhhh
Q psy9399 24 PTGVQEQAIPAAIS--G---RDLIVSSQTGSGKTAAFMLPALHKFAS 65 (453)
Q Consensus 24 ~~~~Q~~~~~~~~~--~---~~~lv~a~TGsGKT~~~l~~~~~~l~~ 65 (453)
+.|||+..+..+.. + +..++.||.|.||+..+...+...+..
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~ 48 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLCE 48 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 36888888887764 2 238899999999998777766666554
No 289
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.88 E-value=0.14 Score=51.82 Aligned_cols=58 Identities=10% Similarity=0.052 Sum_probs=41.7
Q ss_pred HhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHH
Q psy9399 35 AISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVT 114 (453)
Q Consensus 35 ~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~ 114 (453)
.++.+-.++.+|=|.|||.+..+.+...+.. .+.+++|.+|...-+.++.
T Consensus 184 ~fkq~~tV~taPRqrGKS~iVgi~l~~La~f------------------------------~Gi~IlvTAH~~~ts~evF 233 (752)
T PHA03333 184 EYGKCYTAATVPRRCGKTTIMAIILAAMISF------------------------------LEIDIVVQAQRKTMCLTLY 233 (752)
T ss_pred HHhhcceEEEeccCCCcHHHHHHHHHHHHHh------------------------------cCCeEEEECCChhhHHHHH
Confidence 3455678999999999998655444433321 1458999999999888888
Q ss_pred HHHHHHhc
Q psy9399 115 AATERYGL 122 (453)
Q Consensus 115 ~~~~~~~~ 122 (453)
+.+.....
T Consensus 234 ~rv~~~le 241 (752)
T PHA03333 234 NRVETVVH 241 (752)
T ss_pred HHHHHHHH
Confidence 77766553
No 290
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.86 E-value=0.13 Score=53.34 Aligned_cols=68 Identities=9% Similarity=0.156 Sum_probs=37.7
Q ss_pred EeChHHHHHHHhcCCCCCCCccEEEEechhhhcc-cCChHHHHHHHhhCCCCccEEEEEeecC-hHHHHHHHhh
Q psy9399 153 LATPGRLIDHMNSGKINFSHLQILVLDEADRMLD-MGFINDIEKIVDATPVTRQTMLFSATLD-GIVGNMAENI 224 (453)
Q Consensus 153 v~T~~~l~~~l~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SAT~~-~~~~~~~~~~ 224 (453)
+.+|+.+...+. .+.+.++|+||=+=+... ......+..+.........++.++||.. ..+....+.+
T Consensus 248 ~~~~~~l~~al~----~~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f 317 (767)
T PRK14723 248 VKDAADLRFALA----ALGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAY 317 (767)
T ss_pred cCCHHHHHHHHH----HhcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHH
Confidence 346666666555 234668889988875542 2233444444444444456788888864 3334344433
No 291
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.82 E-value=0.088 Score=49.46 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=30.8
Q ss_pred cHHHHHHHHHHhcC--C---cEEEEcCCCchHHHHHHHHHHHhhhh
Q psy9399 25 TGVQEQAIPAAISG--R---DLIVSSQTGSGKTAAFMLPALHKFAS 65 (453)
Q Consensus 25 ~~~Q~~~~~~~~~~--~---~~lv~a~TGsGKT~~~l~~~~~~l~~ 65 (453)
+|||+..+..+... + ..++.||.|.|||..+...+...+..
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~ 48 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCE 48 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 68888888887732 2 38899999999998776666655543
No 292
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.81 E-value=0.047 Score=50.68 Aligned_cols=48 Identities=27% Similarity=0.433 Sum_probs=30.7
Q ss_pred HHHHhCCCCCCcHHHHHHHHH-HhcCCcEEEEcCCCchHHHHHHHHHHHhhh
Q psy9399 14 KALVKVGYTKPTGVQEQAIPA-AISGRDLIVSSQTGSGKTAAFMLPALHKFA 64 (453)
Q Consensus 14 ~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~ 64 (453)
+.|.+.|. +++.|.+.+.. +..+++++++|+||||||. ++-.++..+.
T Consensus 109 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~al~~~i~ 157 (299)
T TIGR02782 109 DDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTT-LANALLAEIA 157 (299)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHHhh
Confidence 33444454 44555555554 4455789999999999997 4555555543
No 293
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.79 E-value=0.057 Score=50.24 Aligned_cols=46 Identities=13% Similarity=0.077 Sum_probs=25.6
Q ss_pred CCCccEEEEechhhhcccCCh--HHHHHHHhhC-CCCccEEEEEeecCh
Q psy9399 170 FSHLQILVLDEADRMLDMGFI--NDIEKIVDAT-PVTRQTMLFSATLDG 215 (453)
Q Consensus 170 ~~~~~~iIiDE~h~~~~~~~~--~~~~~~~~~~-~~~~~~i~~SAT~~~ 215 (453)
+.+++++||||........+. ..+..++... .....+++.|--...
T Consensus 215 l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~ 263 (306)
T PRK08939 215 VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFD 263 (306)
T ss_pred hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHH
Confidence 467899999999854333232 2334444322 344456666654433
No 294
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.79 E-value=0.064 Score=52.94 Aligned_cols=86 Identities=20% Similarity=0.226 Sum_probs=58.5
Q ss_pred HHHHHHHhCCCCCCc----HHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccc
Q psy9399 11 LVLKALVKVGYTKPT----GVQEQAIPAAISG--RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKI 84 (453)
Q Consensus 11 ~~~~~l~~~~~~~~~----~~Q~~~~~~~~~~--~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (453)
-+...|++.--..++ .+|.+-=+.+... +-.+|.|..|||||.++|.-+...+...+...
T Consensus 193 vL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l-------------- 258 (747)
T COG3973 193 VLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPL-------------- 258 (747)
T ss_pred HHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhcccccc--------------
Confidence 356666664333333 3454444444544 44899999999999998887777666544321
Q ss_pred hhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy9399 85 YTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121 (453)
Q Consensus 85 ~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 121 (453)
.+..+||+.|.+....-+...+-.++
T Consensus 259 -----------~~k~vlvl~PN~vFleYis~VLPeLG 284 (747)
T COG3973 259 -----------QAKPVLVLGPNRVFLEYISRVLPELG 284 (747)
T ss_pred -----------ccCceEEEcCcHHHHHHHHHhchhhc
Confidence 23349999999999988888888776
No 295
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.78 E-value=0.24 Score=49.13 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=17.2
Q ss_pred cCCcEEEEcCCCchHHHHHHHHH
Q psy9399 37 SGRDLIVSSQTGSGKTAAFMLPA 59 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~~l~~~ 59 (453)
.++.+.+.||||+|||......+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLA 371 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLA 371 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34568899999999997654433
No 296
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.74 E-value=0.098 Score=53.30 Aligned_cols=40 Identities=13% Similarity=0.295 Sum_probs=27.5
Q ss_pred CCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEE
Q psy9399 170 FSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFS 210 (453)
Q Consensus 170 ~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 210 (453)
+...+++||||+|++.... ...+...++.-+....+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 4678999999999987544 344445555556666666665
No 297
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.74 E-value=0.046 Score=51.12 Aligned_cols=42 Identities=12% Similarity=0.082 Sum_probs=30.5
Q ss_pred CcHHHHHHHHHHh----cCC---cEEEEcCCCchHHHHHHHHHHHhhhh
Q psy9399 24 PTGVQEQAIPAAI----SGR---DLIVSSQTGSGKTAAFMLPALHKFAS 65 (453)
Q Consensus 24 ~~~~Q~~~~~~~~----~~~---~~lv~a~TGsGKT~~~l~~~~~~l~~ 65 (453)
..|||+..+..+. +++ -.++.||.|.||+..+...+...+..
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~ 51 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQ 51 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 3577777776655 332 37899999999998777776666554
No 298
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.73 E-value=0.052 Score=54.40 Aligned_cols=78 Identities=14% Similarity=0.183 Sum_probs=64.2
Q ss_pred CCCcEEEEeccchhHHHHHHHHhhC-CCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCC
Q psy9399 268 RVGQAVVFTATKRDADIIADRLNIS-GFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDL 346 (453)
Q Consensus 268 ~~~~~lvf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~ 346 (453)
.++++|+.+++..-+..+++.|++. +..+..+||+++..+|.+......+|+.+|+|+|...- -..++++.+||..+.
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal-f~p~~~l~lIIVDEe 102 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL-FLPFKNLGLIIVDEE 102 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH-cCcccCCCEEEEECC
Confidence 4568999999999999999999864 67789999999999999999999999999999995432 235667888776553
No 299
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.73 E-value=0.039 Score=51.57 Aligned_cols=47 Identities=34% Similarity=0.461 Sum_probs=32.2
Q ss_pred HHHHhCCCCCCcHHHHHHHHHH-hcCCcEEEEcCCCchHHHHHHHHHHHhh
Q psy9399 14 KALVKVGYTKPTGVQEQAIPAA-ISGRDLIVSSQTGSGKTAAFMLPALHKF 63 (453)
Q Consensus 14 ~~l~~~~~~~~~~~Q~~~~~~~-~~~~~~lv~a~TGsGKT~~~l~~~~~~l 63 (453)
..|...|. +++.|.+.+..+ ..+++++++|+||||||. ++..++..+
T Consensus 125 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~ 172 (319)
T PRK13894 125 DQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEM 172 (319)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhh
Confidence 34444555 556777776654 456789999999999995 555555543
No 300
>KOG0991|consensus
Probab=95.71 E-value=0.023 Score=49.17 Aligned_cols=45 Identities=20% Similarity=0.213 Sum_probs=31.7
Q ss_pred CCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecC
Q psy9399 169 NFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLD 214 (453)
Q Consensus 169 ~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 214 (453)
+-.+.+.||+||||.|.+. -.+.+++..+...+.+++.+..-+-.
T Consensus 110 p~grhKIiILDEADSMT~g-AQQAlRRtMEiyS~ttRFalaCN~s~ 154 (333)
T KOG0991|consen 110 PPGRHKIIILDEADSMTAG-AQQALRRTMEIYSNTTRFALACNQSE 154 (333)
T ss_pred CCCceeEEEeeccchhhhH-HHHHHHHHHHHHcccchhhhhhcchh
Confidence 3466789999999988654 35677777777777666666555543
No 301
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.71 E-value=0.023 Score=49.47 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=15.3
Q ss_pred cEEEEcCCCchHHHHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAFMLP 58 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~l~~ 58 (453)
+++++||+|.|||..+.+.
T Consensus 52 h~lf~GPPG~GKTTLA~II 70 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARII 70 (233)
T ss_dssp EEEEESSTTSSHHHHHHHH
T ss_pred eEEEECCCccchhHHHHHH
Confidence 5999999999999754333
No 302
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.68 E-value=0.049 Score=63.07 Aligned_cols=62 Identities=34% Similarity=0.393 Sum_probs=44.4
Q ss_pred CCcHHHHHHHHHHhcCC--cEEEEcCCCchHHHHHH---HHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCC
Q psy9399 23 KPTGVQEQAIPAAISGR--DLIVSSQTGSGKTAAFM---LPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ 97 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~~~~--~~lv~a~TGsGKT~~~l---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (453)
.+++.|.+|+..++.+. -++|.|+.|+|||.+.- -++...+.. .+
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~------------------------------~g 1068 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES------------------------------EQ 1068 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh------------------------------cC
Confidence 68999999999998764 37889999999997431 223332222 24
Q ss_pred ceEEEEcCcHHHHHHHH
Q psy9399 98 PRMLVLTPTRELALQVT 114 (453)
Q Consensus 98 ~~~lil~P~~~L~~q~~ 114 (453)
.+++.+.||-.-+.++.
T Consensus 1069 ~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1069 LQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred CeEEEEeChHHHHHHHH
Confidence 57899999976666553
No 303
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.68 E-value=0.086 Score=50.60 Aligned_cols=40 Identities=20% Similarity=0.363 Sum_probs=24.8
Q ss_pred CCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEE
Q psy9399 170 FSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFS 210 (453)
Q Consensus 170 ~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 210 (453)
.....++|+||+|.+....+ ..+...++.-+....+|+.+
T Consensus 117 ~~~~kviIIDEa~~l~~~a~-naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 117 KSRFKVYLIDEVHMLSRHSF-NALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred cCCceEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEEEc
Confidence 35678999999998875433 23444444445555555554
No 304
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.68 E-value=0.12 Score=50.57 Aligned_cols=50 Identities=20% Similarity=0.362 Sum_probs=31.0
Q ss_pred ccEEEEechhhhc-ccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHH
Q psy9399 173 LQILVLDEADRML-DMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAE 222 (453)
Q Consensus 173 ~~~iIiDE~h~~~-~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~ 222 (453)
.++||+|.+-++. +......+..+........-++.++|+..........
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~ 226 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAK 226 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHH
Confidence 4899999995443 3334555666666555556677888887644333333
No 305
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.65 E-value=0.11 Score=50.52 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=26.5
Q ss_pred CcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q psy9399 24 PTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFM 56 (453)
Q Consensus 24 ~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l 56 (453)
+......++..+..++++++.||+|+|||..+-
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 445566677777788999999999999997553
No 306
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.64 E-value=0.04 Score=51.99 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=31.6
Q ss_pred CcHHHHHHHHHHh----cCC---cEEEEcCCCchHHHHHHHHHHHhhhh
Q psy9399 24 PTGVQEQAIPAAI----SGR---DLIVSSQTGSGKTAAFMLPALHKFAS 65 (453)
Q Consensus 24 ~~~~Q~~~~~~~~----~~~---~~lv~a~TGsGKT~~~l~~~~~~l~~ 65 (453)
+.|||+..+..+. +++ -.++.||.|.||+..+...+...+..
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~ 51 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQ 51 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 5688888887765 332 38899999999998777776666654
No 307
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.60 E-value=0.19 Score=43.27 Aligned_cols=40 Identities=20% Similarity=0.395 Sum_probs=24.6
Q ss_pred CCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEE
Q psy9399 170 FSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFS 210 (453)
Q Consensus 170 ~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 210 (453)
.....++||||+|.+.... ...+...++.-+....+|+++
T Consensus 94 ~~~~kviiide~~~l~~~~-~~~Ll~~le~~~~~~~~il~~ 133 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAA-ANALLKTLEEPPPNTLFILIT 133 (188)
T ss_pred cCCeEEEEEechhhhCHHH-HHHHHHHhcCCCCCeEEEEEE
Confidence 4667899999999886543 333444455544444455443
No 308
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.60 E-value=0.11 Score=52.88 Aligned_cols=39 Identities=18% Similarity=0.410 Sum_probs=25.6
Q ss_pred CCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEE
Q psy9399 171 SHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFS 210 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 210 (453)
.+++++||||+|+|....+ ..+.+.++.-+....+|+.+
T Consensus 123 g~~KV~IIDEvh~Ls~~a~-NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAF-NAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred CCceEEEEEChhhCCHHHH-HHHHHhcccCCCCeEEEEEE
Confidence 5689999999999876553 33444444445555565554
No 309
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.59 E-value=0.092 Score=54.18 Aligned_cols=92 Identities=24% Similarity=0.175 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHhh--CCCCcEEEEeccchhHHHHHHHHhhC-C-CceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCc
Q psy9399 254 LHKNRLLDYLLRD--KRVGQAVVFTATKRDADIIADRLNIS-G-FLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVA 329 (453)
Q Consensus 254 ~~~~~~~~~l~~~--~~~~~~lvf~~~~~~~~~l~~~L~~~-~-~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~ 329 (453)
+.|.++...++.. ..++++||.++....+..+.+.|++. + ..+..+|++++..+|.+......+|+.+|+|+|..
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRS- 249 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRS- 249 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcce-
Confidence 4566655555543 34578999999999999999999864 3 57899999999999999999999999999999954
Q ss_pred ccCCCCCCCcEEEEcCC
Q psy9399 330 ARGIDVPAITHVFNYDL 346 (453)
Q Consensus 330 ~~Gvdi~~~~~Vi~~~~ 346 (453)
+.=.-++++..||..+-
T Consensus 250 AvFaP~~~LgLIIvdEE 266 (665)
T PRK14873 250 AVFAPVEDLGLVAIWDD 266 (665)
T ss_pred eEEeccCCCCEEEEEcC
Confidence 23345667788776554
No 310
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.58 E-value=0.066 Score=53.47 Aligned_cols=22 Identities=32% Similarity=0.370 Sum_probs=17.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q psy9399 41 LIVSSQTGSGKTAAFMLPALHK 62 (453)
Q Consensus 41 ~lv~a~TGsGKT~~~l~~~~~~ 62 (453)
.++.||.|+|||.++...+...
T Consensus 39 ~Lf~GppGtGKTTlA~~lA~~l 60 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLIAMAV 60 (504)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5999999999998766554443
No 311
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.56 E-value=0.034 Score=58.22 Aligned_cols=38 Identities=16% Similarity=0.331 Sum_probs=25.4
Q ss_pred CCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEE
Q psy9399 171 SHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLF 209 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~ 209 (453)
.+++++||||+|+|.... ...+.+.++.-+....+|+.
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEEE
Confidence 467899999999986443 34455555555555555655
No 312
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.55 E-value=0.12 Score=54.02 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=23.7
Q ss_pred CccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecCh
Q psy9399 172 HLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDG 215 (453)
Q Consensus 172 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~ 215 (453)
+..++|+||+|++.... ...++..+. ..+++++++|..+
T Consensus 109 ~~~IL~IDEIh~Ln~~q----QdaLL~~lE-~g~IiLI~aTTen 147 (725)
T PRK13341 109 KRTILFIDEVHRFNKAQ----QDALLPWVE-NGTITLIGATTEN 147 (725)
T ss_pred CceEEEEeChhhCCHHH----HHHHHHHhc-CceEEEEEecCCC
Confidence 45699999999875432 223333332 2457777777543
No 313
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.51 E-value=0.18 Score=47.92 Aligned_cols=43 Identities=26% Similarity=0.330 Sum_probs=28.4
Q ss_pred CCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeec
Q psy9399 170 FSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATL 213 (453)
Q Consensus 170 ~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 213 (453)
.....++||||+|.|.... ...+...++.-+....++++|..+
T Consensus 139 ~g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit~~~ 181 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILISHSS 181 (351)
T ss_pred cCCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEECCh
Confidence 3567899999999886544 344555555555556666666443
No 314
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.49 E-value=0.13 Score=52.58 Aligned_cols=40 Identities=15% Similarity=0.305 Sum_probs=26.8
Q ss_pred CCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEE
Q psy9399 170 FSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFS 210 (453)
Q Consensus 170 ~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 210 (453)
+.+.+++||||+|++.... ...+.+.++..+....+|+.+
T Consensus 117 ~gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 3567899999999876543 344555555555666666665
No 315
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.47 E-value=0.064 Score=57.48 Aligned_cols=102 Identities=15% Similarity=0.084 Sum_probs=76.6
Q ss_pred EEEEEcchhhHHHHHH--HHHhhCCCCcEEEEeccchhHHHHHHHHhh----CCCceeecCCCCCHHHHHHHHHHHhcCC
Q psy9399 246 SILFVDDILHKNRLLD--YLLRDKRVGQAVVFTATKRDADIIADRLNI----SGFLAAPLHGDLHQNARNRTLENLRRGR 319 (453)
Q Consensus 246 ~~~~~~~~~~~~~~~~--~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 319 (453)
.++..+...-|..+.. .+..-..+.+++|.++|+.-|...++.+++ .++.+..++|..+..++..+++.+.+|+
T Consensus 475 ~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~ 554 (926)
T TIGR00580 475 RLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGK 554 (926)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCC
Confidence 3555555555554322 121223457899999999999998888765 3567888999999999999999999999
Q ss_pred ccEEEEe-CCcccCCCCCCCcEEEEcCCC
Q psy9399 320 IKILVAT-DVAARGIDVPAITHVFNYDLP 347 (453)
Q Consensus 320 ~~vLv~T-~~~~~Gvdi~~~~~Vi~~~~~ 347 (453)
++|+|+| ..+...+.+.++.++|.....
T Consensus 555 ~dIVIGTp~ll~~~v~f~~L~llVIDEah 583 (926)
T TIGR00580 555 IDILIGTHKLLQKDVKFKDLGLLIIDEEQ 583 (926)
T ss_pred ceEEEchHHHhhCCCCcccCCEEEeeccc
Confidence 9999999 566667888889988875543
No 316
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.44 E-value=0.17 Score=46.27 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=23.3
Q ss_pred CCcHHHHHHHHHHh----cCC-cEEEEcCCCchHHHHHH
Q psy9399 23 KPTGVQEQAIPAAI----SGR-DLIVSSQTGSGKTAAFM 56 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~----~~~-~~lv~a~TGsGKT~~~l 56 (453)
.+++.+.+++..+. .+. .+++.||+|+|||....
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 35566666666653 223 48899999999997443
No 317
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.44 E-value=0.12 Score=49.59 Aligned_cols=89 Identities=13% Similarity=0.300 Sum_probs=50.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATE 118 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 118 (453)
.-+++.|++|+|||...+..+... .. .+.+++|+... +-..|+.....
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~-a~------------------------------~g~~VlYvs~E-Es~~qi~~Ra~ 130 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARL-AK------------------------------RGGKVLYVSGE-ESPEQIKLRAD 130 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH-Hh------------------------------cCCeEEEEECC-cCHHHHHHHHH
Confidence 348999999999998554444333 22 13478888664 33466665555
Q ss_pred HHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEechhhhc
Q psy9399 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRML 185 (453)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h~~~ 185 (453)
+++.....+. +... +..+.+...+.. .+.++||||+++.+.
T Consensus 131 rlg~~~~~l~---l~~e------------------~~le~I~~~i~~-----~~~~lVVIDSIq~l~ 171 (372)
T cd01121 131 RLGISTENLY---LLAE------------------TNLEDILASIEE-----LKPDLVIIDSIQTVY 171 (372)
T ss_pred HcCCCcccEE---EEcc------------------CcHHHHHHHHHh-----cCCcEEEEcchHHhh
Confidence 5542211111 1110 122344444432 357899999999875
No 318
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.43 E-value=0.21 Score=44.43 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=19.2
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHh
Q psy9399 37 SGRDLIVSSQTGSGKTAAFMLPALHK 62 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~~l~~~~~~ 62 (453)
.+.-+++.|++|+|||...+..+...
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~ 48 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF 48 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35569999999999998654544443
No 319
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.42 E-value=0.035 Score=47.27 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=18.1
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHh
Q psy9399 37 SGRDLIVSSQTGSGKTAAFMLPALHK 62 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~~l~~~~~~ 62 (453)
++.++++.||+|+|||..+...+.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~ 71 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEA 71 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHh
Confidence 55779999999999998654444443
No 320
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.42 E-value=0.11 Score=51.30 Aligned_cols=90 Identities=20% Similarity=0.323 Sum_probs=51.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATE 118 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 118 (453)
.-+++.|++|+|||...+..+..... .+.+++|+.-. +-..|+.....
T Consensus 81 s~~lI~G~pG~GKTtL~lq~a~~~a~-------------------------------~g~~vlYvs~E-es~~qi~~ra~ 128 (446)
T PRK11823 81 SVVLIGGDPGIGKSTLLLQVAARLAA-------------------------------AGGKVLYVSGE-ESASQIKLRAE 128 (446)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh-------------------------------cCCeEEEEEcc-ccHHHHHHHHH
Confidence 34899999999999855544443321 14478888754 44567666666
Q ss_pred HHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEechhhhcc
Q psy9399 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLD 186 (453)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h~~~~ 186 (453)
+++.....+. +... ...+.+...+.. .+.++||+|+++.+..
T Consensus 129 rlg~~~~~l~---~~~e------------------~~l~~i~~~i~~-----~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 129 RLGLPSDNLY---LLAE------------------TNLEAILATIEE-----EKPDLVVIDSIQTMYS 170 (446)
T ss_pred HcCCChhcEE---EeCC------------------CCHHHHHHHHHh-----hCCCEEEEechhhhcc
Confidence 6543211111 1100 112334443322 3578999999997754
No 321
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.39 E-value=0.13 Score=51.85 Aligned_cols=136 Identities=13% Similarity=0.081 Sum_probs=79.2
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHH
Q psy9399 37 SGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~ 116 (453)
+.+..++..|==.|||.... +++..+.. .-.+.++++.+|.+.-+..++++
T Consensus 253 kqk~tVflVPRR~GKTwivv-~iI~~ll~----------------------------s~~Gi~IgytAH~~~ts~~vF~e 303 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLV-PLIALALA----------------------------TFRGIKIGYTAHIRKATEPVFEE 303 (738)
T ss_pred hccceEEEecccCCchhhHH-HHHHHHHH----------------------------hCCCCEEEEEcCcHHHHHHHHHH
Confidence 33568999999999998544 55554443 22366999999999999999888
Q ss_pred HHHHhccc-CCeeEEEEECCCchHHHHHHhcCC--CCEEEeChHHHHHHHhcCCCCCCCccEEEEechhhhcccCChHHH
Q psy9399 117 TERYGLYM-KKIKAISILGGMPYLRQMQLLSRN--PEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDI 193 (453)
Q Consensus 117 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~ 193 (453)
+....... +.-.+.... |+.. .-...++ ..|.+.+- ...+...-..++++|+|||+.+.+..+...+
T Consensus 304 I~~~le~~f~~~~v~~vk-Ge~I---~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~al~~il 373 (738)
T PHA03368 304 IGARLRQWFGASRVDHVK-GETI---SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPDAVQTIM 373 (738)
T ss_pred HHHHHhhhcchhheeeec-CcEE---EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHHHHHHHH
Confidence 87754321 111111111 1111 0001112 24445421 1122223457899999999988765544444
Q ss_pred HHHHhhCCCCccEEEEEeecC
Q psy9399 194 EKIVDATPVTRQTMLFSATLD 214 (453)
Q Consensus 194 ~~~~~~~~~~~~~i~~SAT~~ 214 (453)
..+.. .+.++|++|.|-+
T Consensus 374 -p~l~~--~n~k~I~ISS~Ns 391 (738)
T PHA03368 374 -GFLNQ--TNCKIIFVSSTNT 391 (738)
T ss_pred -HHHhc--cCccEEEEecCCC
Confidence 33322 2667899998854
No 322
>PF13173 AAA_14: AAA domain
Probab=95.39 E-value=0.27 Score=39.24 Aligned_cols=38 Identities=13% Similarity=0.302 Sum_probs=24.1
Q ss_pred CccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeec
Q psy9399 172 HLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATL 213 (453)
Q Consensus 172 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 213 (453)
.-.+|++||+|.+.+ +...+..+.+.. ...+ +.+|++.
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~-ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIK-IILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCce-EEEEccc
Confidence 456899999998864 456666666654 2233 4444443
No 323
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.38 E-value=0.022 Score=50.66 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=22.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhhhh
Q psy9399 38 GRDLIVSSQTGSGKTAAFMLPALHKFAS 65 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~l~~~~~~l~~ 65 (453)
+..++|.|++|+|||...+..+.+.+.+
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~ 46 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKN 46 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhh
Confidence 3559999999999998777666666554
No 324
>PRK04195 replication factor C large subunit; Provisional
Probab=95.35 E-value=0.11 Score=51.95 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=15.6
Q ss_pred CcEEEEcCCCchHHHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAFML 57 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~ 57 (453)
+.+++.||+|+|||..+..
T Consensus 40 ~~lLL~GppG~GKTtla~a 58 (482)
T PRK04195 40 KALLLYGPPGVGKTSLAHA 58 (482)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 5699999999999975433
No 325
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.34 E-value=0.22 Score=47.58 Aligned_cols=43 Identities=21% Similarity=0.318 Sum_probs=28.1
Q ss_pred CCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeec
Q psy9399 170 FSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATL 213 (453)
Q Consensus 170 ~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 213 (453)
-....++||||+|.+.... ...+.+.++.-+....+|++|..+
T Consensus 139 ~~~~kVviIDead~m~~~a-anaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 139 EGGWRVVIVDTADEMNANA-ANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred cCCCEEEEEechHhcCHHH-HHHHHHHHhcCCCCeEEEEEECCc
Confidence 3567899999999886443 344555555555555566666554
No 326
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.32 E-value=0.085 Score=52.23 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=16.7
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q psy9399 41 LIVSSQTGSGKTAAFMLPALH 61 (453)
Q Consensus 41 ~lv~a~TGsGKT~~~l~~~~~ 61 (453)
.+++||+|+|||..+.+.+-.
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~ 59 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKS 59 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 799999999999866555443
No 327
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.32 E-value=0.084 Score=47.33 Aligned_cols=53 Identities=15% Similarity=0.173 Sum_probs=37.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHH
Q psy9399 38 GRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAAT 117 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 117 (453)
+..++|.||+|+|||...+..+...+.+ +.+++|++- -+-..|+.+.+
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~-------------------------------ge~~lyvs~-ee~~~~i~~~~ 68 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQM-------------------------------GEPGIYVAL-EEHPVQVRRNM 68 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc-------------------------------CCcEEEEEe-eCCHHHHHHHH
Confidence 3559999999999998776666665543 447788774 35556776666
Q ss_pred HHHhc
Q psy9399 118 ERYGL 122 (453)
Q Consensus 118 ~~~~~ 122 (453)
..++.
T Consensus 69 ~~~g~ 73 (237)
T TIGR03877 69 AQFGW 73 (237)
T ss_pred HHhCC
Confidence 66553
No 328
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.31 E-value=0.1 Score=50.30 Aligned_cols=42 Identities=24% Similarity=0.404 Sum_probs=26.2
Q ss_pred CCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeec
Q psy9399 171 SHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATL 213 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 213 (453)
.+.+++||||+|.|..... ..+...++.-+....+|+.|.++
T Consensus 116 ~~~kViiIDead~m~~~aa-naLLk~LEep~~~~~fIL~a~~~ 157 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAA-NALLKAVEEPPPRTVWLLCAPSP 157 (394)
T ss_pred CCcEEEEEechhhcCHHHH-HHHHHHhhcCCCCCeEEEEECCh
Confidence 5678999999999865543 34444555444455455555553
No 329
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.28 E-value=0.18 Score=51.44 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=26.6
Q ss_pred CCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEE
Q psy9399 170 FSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFS 210 (453)
Q Consensus 170 ~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 210 (453)
..+++++||||+|+|.... ...+...++.-+....+|+.+
T Consensus 117 ~~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEEEe
Confidence 4678999999999887544 344555555555555566555
No 330
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.28 E-value=0.16 Score=51.06 Aligned_cols=40 Identities=15% Similarity=0.283 Sum_probs=27.3
Q ss_pred CCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEE
Q psy9399 170 FSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFS 210 (453)
Q Consensus 170 ~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 210 (453)
..+..++||||+|++.... ...+...++.-+....+|+.+
T Consensus 117 ~g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 3567899999999987654 345555666556666666655
No 331
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.25 E-value=0.15 Score=47.54 Aligned_cols=43 Identities=16% Similarity=0.099 Sum_probs=31.6
Q ss_pred CCcHHHHHHHHHHh----cCC---cEEEEcCCCchHHHHHHHHHHHhhhh
Q psy9399 23 KPTGVQEQAIPAAI----SGR---DLIVSSQTGSGKTAAFMLPALHKFAS 65 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~----~~~---~~lv~a~TGsGKT~~~l~~~~~~l~~ 65 (453)
.+.|||...+..+. .++ -.++.||.|.||+..+...+...+..
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~ 52 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQ 52 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 46788888877765 332 38999999999998776666665554
No 332
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=95.24 E-value=0.098 Score=55.90 Aligned_cols=83 Identities=12% Similarity=0.097 Sum_probs=68.9
Q ss_pred HHhhCCCCcEEEEeccchhHHHHHHHHh----hCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEe-CCcccCCCCCC
Q psy9399 263 LLRDKRVGQAVVFTATKRDADIIADRLN----ISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVAT-DVAARGIDVPA 337 (453)
Q Consensus 263 l~~~~~~~~~lvf~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T-~~~~~Gvdi~~ 337 (453)
+..-..+.++.|+++|.--|+.=++-++ ...+++..++.-.+.++...+++..++|+++|+|+| ..+..+|-+.+
T Consensus 637 FkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~Fkd 716 (1139)
T COG1197 637 FKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKD 716 (1139)
T ss_pred HHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEec
Confidence 3334566899999999876666555554 456788889988999999999999999999999999 99999999999
Q ss_pred CcEEEEcC
Q psy9399 338 ITHVFNYD 345 (453)
Q Consensus 338 ~~~Vi~~~ 345 (453)
+.++|...
T Consensus 717 LGLlIIDE 724 (1139)
T COG1197 717 LGLLIIDE 724 (1139)
T ss_pred CCeEEEec
Confidence 99988633
No 333
>CHL00181 cbbX CbbX; Provisional
Probab=95.24 E-value=0.14 Score=47.21 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=16.4
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAFMLPA 59 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~~~ 59 (453)
.++++.||+|+|||.++-..+
T Consensus 60 ~~ill~G~pGtGKT~lAr~la 80 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMA 80 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 358999999999998654443
No 334
>KOG2028|consensus
Probab=95.24 E-value=0.11 Score=48.10 Aligned_cols=16 Identities=31% Similarity=0.492 Sum_probs=13.9
Q ss_pred cEEEEcCCCchHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAF 55 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~ 55 (453)
..+++||+|+|||..+
T Consensus 164 SmIlWGppG~GKTtlA 179 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLA 179 (554)
T ss_pred ceEEecCCCCchHHHH
Confidence 4999999999999744
No 335
>KOG0733|consensus
Probab=95.23 E-value=0.13 Score=51.07 Aligned_cols=52 Identities=19% Similarity=0.169 Sum_probs=33.5
Q ss_pred CCCCCCCCCHHHHHHHHhC---CCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q psy9399 1 MNFKSIGLHELVLKALVKV---GYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~---~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~ 55 (453)
.+|++.|--+++...|... .+.+ |-+.+++- +.....++++||+|+|||+.+
T Consensus 508 VtW~dIGaL~~vR~eL~~aI~~PiK~--pd~~k~lG-i~~PsGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 508 VTWDDIGALEEVRLELNMAILAPIKR--PDLFKALG-IDAPSGVLLCGPPGCGKTLLA 562 (802)
T ss_pred CChhhcccHHHHHHHHHHHHhhhccC--HHHHHHhC-CCCCCceEEeCCCCccHHHHH
Confidence 4788888888887777652 3332 33323221 112356999999999999844
No 336
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.22 E-value=0.22 Score=48.82 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=14.8
Q ss_pred cEEEEcCCCchHHHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAFML 57 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~l~ 57 (453)
++++.||+|+|||..+..
T Consensus 38 ~ilL~GppGtGKTtLA~~ 55 (413)
T PRK13342 38 SMILWGPPGTGKTTLARI 55 (413)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 589999999999975433
No 337
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.20 E-value=0.041 Score=50.80 Aligned_cols=37 Identities=24% Similarity=0.315 Sum_probs=30.5
Q ss_pred HhCCCCCCcHHHHHHHHHHhcCC-cEEEEcCCCchHHH
Q psy9399 17 VKVGYTKPTGVQEQAIPAAISGR-DLIVSSQTGSGKTA 53 (453)
Q Consensus 17 ~~~~~~~~~~~Q~~~~~~~~~~~-~~lv~a~TGsGKT~ 53 (453)
.-..+..+++-|...+..+.... +++++|.||||||.
T Consensus 151 dli~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTT 188 (355)
T COG4962 151 DLIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTT 188 (355)
T ss_pred HHHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHH
Confidence 33466678999998888777665 89999999999996
No 338
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.19 E-value=0.14 Score=51.00 Aligned_cols=25 Identities=20% Similarity=0.209 Sum_probs=19.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhhh
Q psy9399 40 DLIVSSQTGSGKTAAFMLPALHKFA 64 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~l~~~~~~l~ 64 (453)
..+++||.|+|||.++.+.+.....
T Consensus 45 a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4899999999999877666555433
No 339
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.17 E-value=0.12 Score=47.33 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=14.1
Q ss_pred CcEEEEcCCCchHHHH
Q psy9399 39 RDLIVSSQTGSGKTAA 54 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~ 54 (453)
.+.+++|+||.|||.+
T Consensus 62 p~lLivG~snnGKT~I 77 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI 77 (302)
T ss_pred CceEEecCCCCcHHHH
Confidence 3699999999999984
No 340
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.16 E-value=0.14 Score=48.58 Aligned_cols=60 Identities=13% Similarity=0.225 Sum_probs=30.6
Q ss_pred eChHHHHHHHhcCCCCCCCccEEEEechhhhc-ccCChHHHHHHHhhCCCCccEEEEEeecC
Q psy9399 154 ATPGRLIDHMNSGKINFSHLQILVLDEADRML-DMGFINDIEKIVDATPVTRQTMLFSATLD 214 (453)
Q Consensus 154 ~T~~~l~~~l~~~~~~~~~~~~iIiDE~h~~~-~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 214 (453)
.+|+.+...+..-. ....+++|++|=+=+.. +......+..+........-++.+||+..
T Consensus 268 ~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~ 328 (407)
T PRK12726 268 TSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK 328 (407)
T ss_pred CCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc
Confidence 45565554443211 12457899999886543 22234445555544443333455666543
No 341
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.12 E-value=0.1 Score=52.59 Aligned_cols=40 Identities=18% Similarity=0.364 Sum_probs=27.0
Q ss_pred CCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEE
Q psy9399 170 FSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFS 210 (453)
Q Consensus 170 ~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 210 (453)
..+++++||||+|++....+ ..+...++.-+....+|+.|
T Consensus 117 ~~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 35688999999998876543 34444555555666666665
No 342
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.09 E-value=0.14 Score=52.41 Aligned_cols=39 Identities=18% Similarity=0.387 Sum_probs=26.1
Q ss_pred CCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEE
Q psy9399 171 SHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFS 210 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 210 (453)
.+++++||||+|+|....+ ..+.+.++--+....+|+.|
T Consensus 118 g~~KV~IIDEah~Ls~~a~-NALLKtLEEPp~~v~FIL~T 156 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSF-NALLKTLEEPPEHVKFLLAT 156 (647)
T ss_pred CCCEEEEEechHhCCHHHH-HHHHHHHHcCCCCeEEEEec
Confidence 5688999999999876553 44444555555555555553
No 343
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=95.08 E-value=0.14 Score=52.94 Aligned_cols=99 Identities=17% Similarity=0.125 Sum_probs=76.7
Q ss_pred EEEEEEcchhhHHHHHHHHHhh--CCCCcEEEEeccchhHHHHHHHHhh-CCCceeecCCCCCHHHHHHHHHHHhcCCcc
Q psy9399 245 QSILFVDDILHKNRLLDYLLRD--KRVGQAVVFTATKRDADIIADRLNI-SGFLAAPLHGDLHQNARNRTLENLRRGRIK 321 (453)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~lvf~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 321 (453)
..+...-+.+.+.++...++.. ..+.++||.++-......+.+.++. .|.++..+|+++++.+|.....+..+|+.+
T Consensus 219 ~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~ 298 (730)
T COG1198 219 PFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEAR 298 (730)
T ss_pred ceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCce
Confidence 3444445666677766555554 4557899999999999998888876 478899999999999999999999999999
Q ss_pred EEEEeCCcccCCCCCCCcEEEEc
Q psy9399 322 ILVATDVAARGIDVPAITHVFNY 344 (453)
Q Consensus 322 vLv~T~~~~~Gvdi~~~~~Vi~~ 344 (453)
|+|+|..+ --.-++++..||..
T Consensus 299 vVIGtRSA-lF~Pf~~LGLIIvD 320 (730)
T COG1198 299 VVIGTRSA-LFLPFKNLGLIIVD 320 (730)
T ss_pred EEEEechh-hcCchhhccEEEEe
Confidence 99999532 23345677777653
No 344
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=95.08 E-value=0.079 Score=52.92 Aligned_cols=41 Identities=17% Similarity=0.378 Sum_probs=28.5
Q ss_pred CCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEe
Q psy9399 170 FSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSA 211 (453)
Q Consensus 170 ~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 211 (453)
.....++||||+|++.... ...+...++.-|....+|+++.
T Consensus 115 ~~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~tt 155 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILATT 155 (535)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEEC
Confidence 4678999999999987544 3445555555566666776663
No 345
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.06 E-value=0.042 Score=51.83 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=21.2
Q ss_pred HHhcCCcEEEEcCCCchHHHHHHHHHHHh
Q psy9399 34 AAISGRDLIVSSQTGSGKTAAFMLPALHK 62 (453)
Q Consensus 34 ~~~~~~~~lv~a~TGsGKT~~~l~~~~~~ 62 (453)
++..+.+++|+||||||||. ++-.++..
T Consensus 158 ~v~~~~nilI~G~tGSGKTT-ll~aLl~~ 185 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTT-MSKTLISA 185 (344)
T ss_pred HHHcCCeEEEECCCCccHHH-HHHHHHcc
Confidence 34467889999999999997 45555544
No 346
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.02 E-value=0.14 Score=52.10 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=18.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q psy9399 41 LIVSSQTGSGKTAAFMLPALHKF 63 (453)
Q Consensus 41 ~lv~a~TGsGKT~~~l~~~~~~l 63 (453)
.+++||.|+|||.++-..+....
T Consensus 41 yLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 41 YLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 78899999999987766655443
No 347
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.96 E-value=0.064 Score=51.20 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=19.9
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHhhh
Q psy9399 37 SGRDLIVSSQTGSGKTAAFMLPALHKFA 64 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~~l~~~~~~l~ 64 (453)
.+..++|+||||||||. .+..++..+.
T Consensus 148 ~~GlilI~G~TGSGKTT-~l~al~~~i~ 174 (372)
T TIGR02525 148 AAGLGLICGETGSGKST-LAASIYQHCG 174 (372)
T ss_pred cCCEEEEECCCCCCHHH-HHHHHHHHHH
Confidence 34569999999999997 4555655554
No 348
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=94.95 E-value=0.024 Score=47.74 Aligned_cols=124 Identities=20% Similarity=0.278 Sum_probs=51.5
Q ss_pred EEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy9399 42 IVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121 (453)
Q Consensus 42 lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 121 (453)
++.|+-|-|||.+.-+.+...+.. ...+++|..|+.+-+..+.+.+..-.
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~------------------------------~~~~I~vtAP~~~~~~~lf~~~~~~l 50 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK------------------------------GKIRILVTAPSPENVQTLFEFAEKGL 50 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----------------------------------EEEE-SS--S-HHHHHCC----
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh------------------------------cCceEEEecCCHHHHHHHHHHHHhhc
Confidence 578999999997544443333222 12479999999888777766544322
Q ss_pred cccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCC
Q psy9399 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATP 201 (453)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~ 201 (453)
...+ ++.... ...............|-+..|+.+... -...+++|||||=.+. ...+..++...
T Consensus 51 ~~~~-~~~~~~---~~~~~~~~~~~~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaIp----~p~L~~ll~~~- 114 (177)
T PF05127_consen 51 KALG-YKEEKK---KRIGQIIKLRFNKQRIEFVAPDELLAE-------KPQADLLIVDEAAAIP----LPLLKQLLRRF- 114 (177)
T ss_dssp --------------------------CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCCS-
T ss_pred cccc-cccccc---cccccccccccccceEEEECCHHHHhC-------cCCCCEEEEechhcCC----HHHHHHHHhhC-
Confidence 1111 111000 000000001112446667777766442 2346899999998764 33444444333
Q ss_pred CCccEEEEEeecC
Q psy9399 202 VTRQTMLFSATLD 214 (453)
Q Consensus 202 ~~~~~i~~SAT~~ 214 (453)
..+++|.|..
T Consensus 115 ---~~vv~stTi~ 124 (177)
T PF05127_consen 115 ---PRVVFSTTIH 124 (177)
T ss_dssp ---SEEEEEEEBS
T ss_pred ---CEEEEEeecc
Confidence 2567777764
No 349
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.95 E-value=0.11 Score=44.29 Aligned_cols=53 Identities=17% Similarity=0.306 Sum_probs=38.8
Q ss_pred CCccEEEEechhhhcccCC--hHHHHHHHhhCCCCccEEEEEeecChHHHHHHHh
Q psy9399 171 SHLQILVLDEADRMLDMGF--INDIEKIVDATPVTRQTMLFSATLDGIVGNMAEN 223 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~ 223 (453)
..+++||+||+-...+.++ ...+..++...|...-+|+..-.+|+.+...+..
T Consensus 114 ~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ADl 168 (191)
T PRK05986 114 ESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAADL 168 (191)
T ss_pred CCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCch
Confidence 6789999999998888775 4556666777777766777666677766655543
No 350
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.93 E-value=0.25 Score=50.21 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=19.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhhh
Q psy9399 40 DLIVSSQTGSGKTAAFMLPALHKFA 64 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~l~~~~~~l~ 64 (453)
..++.||.|+|||.++.+.+...+.
T Consensus 40 a~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred eEEEECCCCCCHHHHHHHHHHhccc
Confidence 3889999999999977766655443
No 351
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.93 E-value=0.19 Score=45.18 Aligned_cols=29 Identities=24% Similarity=0.195 Sum_probs=20.3
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHHhhh
Q psy9399 36 ISGRDLIVSSQTGSGKTAAFMLPALHKFA 64 (453)
Q Consensus 36 ~~~~~~lv~a~TGsGKT~~~l~~~~~~l~ 64 (453)
..|.-++|.|++|+|||...+-.+...+.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~ 39 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAK 39 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 34456899999999999855544444433
No 352
>KOG1513|consensus
Probab=94.92 E-value=0.033 Score=56.41 Aligned_cols=158 Identities=15% Similarity=0.165 Sum_probs=93.8
Q ss_pred CCCcHHHHHHHHHHhc--------CC--cEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhc
Q psy9399 22 TKPTGVQEQAIPAAIS--------GR--DLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERL 91 (453)
Q Consensus 22 ~~~~~~Q~~~~~~~~~--------~~--~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (453)
-.++..|.+++-.+.+ |. .++|....|.||-.+..-.|++...+
T Consensus 263 g~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLk-------------------------- 316 (1300)
T KOG1513|consen 263 GHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLK-------------------------- 316 (1300)
T ss_pred cchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhc--------------------------
Confidence 3578889988877663 22 37887777777765544445554444
Q ss_pred ccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCC--chHHHHHHhcCCCCEEEeChHHHHHHHhcCCCC
Q psy9399 92 RFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGM--PYLRQMQLLSRNPEILLATPGRLIDHMNSGKIN 169 (453)
Q Consensus 92 ~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~ 169 (453)
+..++|.+.-+..|-..-.+.++..+.. .+.+..+..-. ....+... .-+..|+++|+..|...-......
T Consensus 317 ----GRKrAlW~SVSsDLKfDAERDL~DigA~--~I~V~alnK~KYakIss~en~-n~krGViFaTYtaLIGEs~~~~~k 389 (1300)
T KOG1513|consen 317 ----GRKRALWFSVSSDLKFDAERDLRDIGAT--GIAVHALNKFKYAKISSKENT-NTKRGVIFATYTALIGESQGKGGK 389 (1300)
T ss_pred ----ccceeEEEEeccccccchhhchhhcCCC--CccceehhhcccccccccccC-CccceeEEEeeHhhhhhccccCch
Confidence 2448999999888888877777776532 13322221000 00000000 012369999998875543321100
Q ss_pred -------------CCCccEEEEechhhhccc---------CChHHHHHHHhhCCCCccEEEEEeec
Q psy9399 170 -------------FSHLQILVLDEADRMLDM---------GFINDIEKIVDATPVTRQTMLFSATL 213 (453)
Q Consensus 170 -------------~~~~~~iIiDE~h~~~~~---------~~~~~~~~~~~~~~~~~~~i~~SAT~ 213 (453)
-..=++|||||||.-.+- .-+..+..+...+|+. ++++.|||=
T Consensus 390 yrtR~rQllqW~Ge~feGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~A-RVVYASATG 454 (1300)
T KOG1513|consen 390 YRTRFRQLLQWCGEDFEGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNA-RVVYASATG 454 (1300)
T ss_pred HHHHHHHHHHHhhhccceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCCc-eEEEeeccC
Confidence 011279999999975541 1456666777777764 699999984
No 353
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=94.91 E-value=0.19 Score=49.49 Aligned_cols=150 Identities=9% Similarity=0.059 Sum_probs=82.4
Q ss_pred CCcHHHHHHHHHHhc------C----CcEEEEcCCCchHHHHHHHH-HHHhhhhcCCcchhhhhccccccccchhhhhhc
Q psy9399 23 KPTGVQEQAIPAAIS------G----RDLIVSSQTGSGKTAAFMLP-ALHKFASSKNKIPVMKKNLNQNNNKIYTHKERL 91 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~~------~----~~~lv~a~TGsGKT~~~l~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (453)
++-|||..++-.+.. + +.++|..|=+-|||..+... ....+..
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~-------------------------- 114 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLN-------------------------- 114 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhh--------------------------
Confidence 578999999998871 1 24899999999999644322 2222222
Q ss_pred ccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcC--CCC
Q psy9399 92 RFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSG--KIN 169 (453)
Q Consensus 92 ~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~--~~~ 169 (453)
...+..+.|+.|+.+-+.+.+..++......+.+. ...........|...-.......+... ...
T Consensus 115 --~~~~~~~~i~A~s~~qa~~~F~~ar~mv~~~~~l~-----------~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~D 181 (546)
T COG4626 115 --WRSGAGIYILAPSVEQAANSFNPARDMVKRDDDLR-----------DLCNVQTHSRTITHRKTDSTIKAVAADPNTVD 181 (546)
T ss_pred --hhcCCcEEEEeccHHHHHHhhHHHHHHHHhCcchh-----------hhhccccceeEEEecccceeeeeeccCCCccc
Confidence 22456899999999888888877776543322111 000000011112222222222222222 223
Q ss_pred CCCccEEEEechhhhccc-CChHHHHHHHhhCCCCccEEEEEee
Q psy9399 170 FSHLQILVLDEADRMLDM-GFINDIEKIVDATPVTRQTMLFSAT 212 (453)
Q Consensus 170 ~~~~~~iIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~~SAT 212 (453)
-.+..+.|+||.|.+... .....+..=+.+. ...+++++|..
T Consensus 182 g~~~~~~I~DEih~f~~~~~~~~~~~~g~~ar-~~~l~~~ITT~ 224 (546)
T COG4626 182 GLNSVGAIIDELHLFGKQEDMYSEAKGGLGAR-PEGLVVYITTS 224 (546)
T ss_pred CCCcceEEEehhhhhcCHHHHHHHHHhhhccC-cCceEEEEecC
Confidence 456789999999987765 2222222222232 34467777653
No 354
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.90 E-value=0.53 Score=38.99 Aligned_cols=53 Identities=17% Similarity=0.321 Sum_probs=40.2
Q ss_pred CCCccEEEEechhhhcccCC--hHHHHHHHhhCCCCccEEEEEeecChHHHHHHH
Q psy9399 170 FSHLQILVLDEADRMLDMGF--INDIEKIVDATPVTRQTMLFSATLDGIVGNMAE 222 (453)
Q Consensus 170 ~~~~~~iIiDE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~ 222 (453)
...++++|+||+-...+.++ ...+..+++..|...-+|+.+-.+|+.+...+.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 35789999999998777664 456667777778777788888888877666554
No 355
>PRK05973 replicative DNA helicase; Provisional
Probab=94.85 E-value=0.099 Score=46.46 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=36.9
Q ss_pred HhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHH
Q psy9399 35 AISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVT 114 (453)
Q Consensus 35 ~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~ 114 (453)
+..|.-++|.|++|+|||...+..+.+.+.+ +.+++|+.-.-. ..|+.
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~-------------------------------Ge~vlyfSlEes-~~~i~ 108 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAMKS-------------------------------GRTGVFFTLEYT-EQDVR 108 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc-------------------------------CCeEEEEEEeCC-HHHHH
Confidence 3445569999999999998766666655433 447788765422 46666
Q ss_pred HHHHHHh
Q psy9399 115 AATERYG 121 (453)
Q Consensus 115 ~~~~~~~ 121 (453)
+.+..++
T Consensus 109 ~R~~s~g 115 (237)
T PRK05973 109 DRLRALG 115 (237)
T ss_pred HHHHHcC
Confidence 6666654
No 356
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.81 E-value=0.44 Score=42.59 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=19.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhhh
Q psy9399 39 RDLIVSSQTGSGKTAAFMLPALHKFA 64 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~~~~~~l~ 64 (453)
.-+++.|++|+|||......+...+.
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~~~~ 51 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYGALK 51 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHh
Confidence 44899999999999866555554433
No 357
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=94.79 E-value=0.096 Score=52.87 Aligned_cols=39 Identities=15% Similarity=0.258 Sum_probs=24.4
Q ss_pred CCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEE
Q psy9399 171 SHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFS 210 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 210 (453)
...+++|+||+|.|.... ...+...++.-+....+|+++
T Consensus 118 ~~~KVIIIDEad~Lt~~A-~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 118 FKYKVYIIDEAHMLSTSA-WNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred CCcEEEEEechHhCCHHH-HHHHHHHHHhCCCcEEEEEEC
Confidence 457899999999886443 344455555545554455544
No 358
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=94.76 E-value=0.11 Score=54.48 Aligned_cols=88 Identities=20% Similarity=0.292 Sum_probs=63.5
Q ss_pred HHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhC----C-Cceee-cCCCCCHHHHHHHHHHHhcCCccEEEEeCC-cc
Q psy9399 258 RLLDYLLRDKRVGQAVVFTATKRDADIIADRLNIS----G-FLAAP-LHGDLHQNARNRTLENLRRGRIKILVATDV-AA 330 (453)
Q Consensus 258 ~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~----~-~~~~~-~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~~ 330 (453)
.++-.+.-...+.++++.++|..-+.++++.|... + ..+.+ +|+.++..++..++++|.+|..+|||+|.. +.
T Consensus 114 g~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~ 193 (1187)
T COG1110 114 GLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLS 193 (1187)
T ss_pred HHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHH
Confidence 34444444555689999999999999999888753 2 33333 999999999999999999999999999954 44
Q ss_pred cCCCC-C--CCcEEEEcC
Q psy9399 331 RGIDV-P--AITHVFNYD 345 (453)
Q Consensus 331 ~Gvdi-~--~~~~Vi~~~ 345 (453)
.-++. . ..+.|+..|
T Consensus 194 k~~e~L~~~kFdfifVDD 211 (1187)
T COG1110 194 KRFEELSKLKFDFIFVDD 211 (1187)
T ss_pred hhHHHhcccCCCEEEEcc
Confidence 43331 2 244555433
No 359
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.72 E-value=0.16 Score=47.91 Aligned_cols=40 Identities=20% Similarity=0.438 Sum_probs=27.8
Q ss_pred CCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEe
Q psy9399 171 SHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSA 211 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 211 (453)
....++|+||++.|... ....+...++.-+....+++++-
T Consensus 108 ~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEcC
Confidence 56889999999988753 34555556665566666666664
No 360
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.70 E-value=0.11 Score=48.85 Aligned_cols=28 Identities=39% Similarity=0.617 Sum_probs=21.5
Q ss_pred HhcCCcEEEEcCCCchHHHHHHHHHHHhh
Q psy9399 35 AISGRDLIVSSQTGSGKTAAFMLPALHKF 63 (453)
Q Consensus 35 ~~~~~~~lv~a~TGsGKT~~~l~~~~~~l 63 (453)
+..+.+++|+|+||||||. ++-.++..+
T Consensus 157 v~~~~nili~G~tgSGKTT-ll~aL~~~i 184 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTT-FTNAALREI 184 (332)
T ss_pred HHcCCcEEEECCCCCCHHH-HHHHHHhhC
Confidence 4467889999999999997 555555553
No 361
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.70 E-value=0.51 Score=44.38 Aligned_cols=39 Identities=18% Similarity=0.309 Sum_probs=24.8
Q ss_pred CccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEe
Q psy9399 172 HLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSA 211 (453)
Q Consensus 172 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 211 (453)
..++|++||+|.+.... ...+..+++..+....+|+.+.
T Consensus 102 ~~~vviiDe~~~l~~~~-~~~L~~~le~~~~~~~lIl~~~ 140 (319)
T PRK00440 102 PFKIIFLDEADNLTSDA-QQALRRTMEMYSQNTRFILSCN 140 (319)
T ss_pred CceEEEEeCcccCCHHH-HHHHHHHHhcCCCCCeEEEEeC
Confidence 46799999999875432 3345555555555566666543
No 362
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=94.68 E-value=0.12 Score=50.25 Aligned_cols=137 Identities=15% Similarity=0.154 Sum_probs=70.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHH-HHHHHHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRE-LALQVTAATE 118 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~-L~~q~~~~~~ 118 (453)
-.++.|+.|||||.+....++..+... ..+.+++++-|+.. +...+...+.
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~----------------------------~~~~~~~~~r~~~~sl~~sv~~~l~ 54 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN----------------------------KKQQNILAARKVQNSIRDSVFKDIE 54 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc----------------------------CCCcEEEEEehhhhHHHHHHHHHHH
Confidence 367899999999998877777666552 12458899989876 4444555555
Q ss_pred HHhcccCCeeEEEEECCCchHHHHHHhcC-CCCEEEeCh-HHHHHHHhcCCCCCCCccEEEEechhhhcccCChHHHHHH
Q psy9399 119 RYGLYMKKIKAISILGGMPYLRQMQLLSR-NPEILLATP-GRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKI 196 (453)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Ilv~T~-~~l~~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~ 196 (453)
......+ +....-...... .. .... +..|++..- +.-.. +. ....++.+.+||+..+....+...+.++
T Consensus 55 ~~i~~~g-~~~~~~~~~~~~--~i-~~~~~g~~i~f~g~~d~~~~-ik----~~~~~~~~~idEa~~~~~~~~~~l~~rl 125 (396)
T TIGR01547 55 NLLSIEG-INYEFKKSKSSM--EI-KILNTGKKFIFKGLNDKPNK-LK----SGAGIAIIWFEEASQLTFEDIKELIPRL 125 (396)
T ss_pred HHHHHcC-ChhheeecCCcc--EE-EecCCCeEEEeecccCChhH-hh----CcceeeeehhhhhhhcCHHHHHHHHHHh
Confidence 4322211 110000000000 00 0011 334555432 11111 11 1234689999999988544333333222
Q ss_pred HhhCCCCccEEEEEeecCh
Q psy9399 197 VDATPVTRQTMLFSATLDG 215 (453)
Q Consensus 197 ~~~~~~~~~~i~~SAT~~~ 215 (453)
.. +.....+++|.+|..
T Consensus 126 -r~-~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 126 -RE-TGGKKFIIFSSNPES 142 (396)
T ss_pred -hc-cCCccEEEEEcCcCC
Confidence 11 222235888888864
No 363
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.67 E-value=0.21 Score=46.09 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=15.6
Q ss_pred CcEEEEcCCCchHHHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAFML 57 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~ 57 (453)
.++++.||+|+|||.++..
T Consensus 59 ~~vll~G~pGTGKT~lA~~ 77 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALR 77 (284)
T ss_pred ceEEEEcCCCCCHHHHHHH
Confidence 4699999999999986533
No 364
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.67 E-value=0.27 Score=48.58 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=17.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAFMLPALH 61 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~~~~~ 61 (453)
+-+.+.||||+|||.+....+..
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHH
Confidence 34889999999999876555543
No 365
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.65 E-value=0.37 Score=46.77 Aligned_cols=53 Identities=11% Similarity=0.224 Sum_probs=28.1
Q ss_pred CCCccEEEEechhhhcc-cCChHHHHHHHhhCCCCccEEEEEeecCh-HHHHHHH
Q psy9399 170 FSHLQILVLDEADRMLD-MGFINDIEKIVDATPVTRQTMLFSATLDG-IVGNMAE 222 (453)
Q Consensus 170 ~~~~~~iIiDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SAT~~~-~~~~~~~ 222 (453)
+...+++++|.+=+... ......+..+.........++.+|||... .+.....
T Consensus 267 l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~ 321 (420)
T PRK14721 267 LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVIS 321 (420)
T ss_pred hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHH
Confidence 46678899998633221 11233333433333334567889999653 3444443
No 366
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.63 E-value=0.3 Score=50.06 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=17.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q psy9399 41 LIVSSQTGSGKTAAFMLPALHK 62 (453)
Q Consensus 41 ~lv~a~TGsGKT~~~l~~~~~~ 62 (453)
.+++||.|+|||.++...+-..
T Consensus 41 ~Lf~Gp~G~GKTtlA~~lA~~l 62 (585)
T PRK14950 41 YLFTGPRGVGKTSTARILAKAV 62 (585)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999998766655443
No 367
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.62 E-value=0.37 Score=46.33 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=17.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhh
Q psy9399 39 RDLIVSSQTGSGKTAAFMLPALHKF 63 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~~~~~~l 63 (453)
.+++|.||+|+|||.+. ..++..+
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 46999999999999754 4444443
No 368
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.58 E-value=0.23 Score=51.34 Aligned_cols=40 Identities=20% Similarity=0.301 Sum_probs=24.2
Q ss_pred CCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEE
Q psy9399 170 FSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFS 210 (453)
Q Consensus 170 ~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 210 (453)
.....++|+||+|.|.... ...+...++.-|....+|+++
T Consensus 116 ~g~~KV~IIDEa~~LT~~A-~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSKSA-FNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred cCCCEEEEEEChhhCCHHH-HHHHHHHhhcCCCceEEEEEc
Confidence 4678899999999886543 333344444444444444444
No 369
>PRK06620 hypothetical protein; Validated
Probab=94.55 E-value=0.085 Score=46.38 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=14.2
Q ss_pred CcEEEEcCCCchHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~ 55 (453)
..++++||+|+|||...
T Consensus 45 ~~l~l~Gp~G~GKThLl 61 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLT 61 (214)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 34899999999999743
No 370
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.53 E-value=0.28 Score=43.69 Aligned_cols=27 Identities=26% Similarity=0.301 Sum_probs=19.6
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHhh
Q psy9399 37 SGRDLIVSSQTGSGKTAAFMLPALHKF 63 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~~l~~~~~~l 63 (453)
.+..+++.|++|+|||..++..+.+.+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~ 45 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL 45 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH
Confidence 345699999999999986555554443
No 371
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=0.78 Score=43.87 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=19.1
Q ss_pred CCccEEEEechhhhcccCChHHHHHHHhh
Q psy9399 171 SHLQILVLDEADRMLDMGFINDIEKIVDA 199 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~ 199 (453)
...-+||+||++.+.+... ..+..+...
T Consensus 122 ~~~~IvvLDEid~L~~~~~-~~LY~L~r~ 149 (366)
T COG1474 122 GKTVIVILDEVDALVDKDG-EVLYSLLRA 149 (366)
T ss_pred CCeEEEEEcchhhhccccc-hHHHHHHhh
Confidence 3456899999999987753 444444443
No 372
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.47 E-value=0.24 Score=50.90 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=19.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhhh
Q psy9399 40 DLIVSSQTGSGKTAAFMLPALHKFA 64 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~l~~~~~~l~ 64 (453)
..++.||.|+|||.++...+-....
T Consensus 40 a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 40 AYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred eEEEECCCCCChHHHHHHHHHHhcC
Confidence 4799999999999876666555443
No 373
>PRK10689 transcription-repair coupling factor; Provisional
Probab=94.34 E-value=0.25 Score=54.35 Aligned_cols=101 Identities=15% Similarity=0.089 Sum_probs=74.6
Q ss_pred EEEEEcchhhHHHHHH--HHHhhCCCCcEEEEeccchhHHHHHHHHhhC----CCceeecCCCCCHHHHHHHHHHHhcCC
Q psy9399 246 SILFVDDILHKNRLLD--YLLRDKRVGQAVVFTATKRDADIIADRLNIS----GFLAAPLHGDLHQNARNRTLENLRRGR 319 (453)
Q Consensus 246 ~~~~~~~~~~~~~~~~--~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~ 319 (453)
.+...+...-|..+.. .+.....+.+++|.++|+.-|...++.++.. ++.+..+++..+..++..+++.+.+|.
T Consensus 624 ~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~ 703 (1147)
T PRK10689 624 RLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGK 703 (1147)
T ss_pred EEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCC
Confidence 4455555555554321 1112234678999999999999998888752 467788999999999999999999999
Q ss_pred ccEEEEe-CCcccCCCCCCCcEEEEcCC
Q psy9399 320 IKILVAT-DVAARGIDVPAITHVFNYDL 346 (453)
Q Consensus 320 ~~vLv~T-~~~~~Gvdi~~~~~Vi~~~~ 346 (453)
.+|+|+| ..+...+++.++.++|....
T Consensus 704 ~dIVVgTp~lL~~~v~~~~L~lLVIDEa 731 (1147)
T PRK10689 704 IDILIGTHKLLQSDVKWKDLGLLIVDEE 731 (1147)
T ss_pred CCEEEECHHHHhCCCCHhhCCEEEEech
Confidence 9999999 55555677778888876544
No 374
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.33 E-value=1.6 Score=36.74 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=15.3
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q psy9399 41 LIVSSQTGSGKTAAFMLPAL 60 (453)
Q Consensus 41 ~lv~a~TGsGKT~~~l~~~~ 60 (453)
+++.|++|+|||......+.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999986544443
No 375
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.27 E-value=0.32 Score=47.28 Aligned_cols=24 Identities=33% Similarity=0.210 Sum_probs=19.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhh
Q psy9399 41 LIVSSQTGSGKTAAFMLPALHKFA 64 (453)
Q Consensus 41 ~lv~a~TGsGKT~~~l~~~~~~l~ 64 (453)
.+++||.|+|||.++...+-....
T Consensus 41 ~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 41 YIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Confidence 889999999999987776655544
No 376
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.20 E-value=0.31 Score=51.63 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCchHHHH
Q psy9399 37 SGRDLIVSSQTGSGKTAA 54 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~ 54 (453)
.++.+++.||+|+|||..
T Consensus 211 ~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCceEEEECCCCCChHHH
Confidence 346799999999999974
No 377
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.20 E-value=0.88 Score=43.99 Aligned_cols=52 Identities=8% Similarity=0.120 Sum_probs=30.0
Q ss_pred CCccEEEEechhhhc-ccCChHHHHHHHhhCC---CCccEEEEEeecCh-HHHHHHH
Q psy9399 171 SHLQILVLDEADRML-DMGFINDIEKIVDATP---VTRQTMLFSATLDG-IVGNMAE 222 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~-~~~~~~~~~~~~~~~~---~~~~~i~~SAT~~~-~~~~~~~ 222 (453)
..+++|+||=+-+.. +......+..+..... ....++.+|||... .+.....
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~ 354 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLK 354 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHH
Confidence 467899999765432 2333445555555431 22457888999765 3444443
No 378
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.17 E-value=0.5 Score=39.66 Aligned_cols=52 Identities=15% Similarity=0.355 Sum_probs=39.3
Q ss_pred CCccEEEEechhhhcccCC--hHHHHHHHhhCCCCccEEEEEeecChHHHHHHH
Q psy9399 171 SHLQILVLDEADRMLDMGF--INDIEKIVDATPVTRQTMLFSATLDGIVGNMAE 222 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~ 222 (453)
..+++||+||+-...+.++ ...+..+++..|....+|+..-.+|+.+...+.
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 5789999999998887774 445666777777777777777777776666554
No 379
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.17 E-value=0.078 Score=51.60 Aligned_cols=40 Identities=25% Similarity=0.392 Sum_probs=29.6
Q ss_pred cHHHHHHHHHHhcCCc--EEEEcCCCchHHHHHHHHHHHhhhh
Q psy9399 25 TGVQEQAIPAAISGRD--LIVSSQTGSGKTAAFMLPALHKFAS 65 (453)
Q Consensus 25 ~~~Q~~~~~~~~~~~~--~lv~a~TGsGKT~~~l~~~~~~l~~ 65 (453)
.+.|...+..+.+... +++.||||||||. -|..++..+..
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTT-TLY~~L~~ln~ 284 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTT-TLYAALSELNT 284 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHH-HHHHHHHHhcC
Confidence 5777777777776543 8999999999997 46666666554
No 380
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.14 E-value=0.43 Score=47.57 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=16.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q psy9399 41 LIVSSQTGSGKTAAFMLPALHK 62 (453)
Q Consensus 41 ~lv~a~TGsGKT~~~l~~~~~~ 62 (453)
.+++||.|+|||.++.+.+...
T Consensus 41 yLf~Gp~G~GKTtlAr~lAk~L 62 (486)
T PRK14953 41 YIFAGPRGTGKTTIARILAKVL 62 (486)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999998765555443
No 381
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.13 E-value=1.5 Score=40.05 Aligned_cols=46 Identities=15% Similarity=0.364 Sum_probs=28.8
Q ss_pred CCccEEEEechhhhc-ccCChHHHHHHHhhCC------CCccEEEEEeecChH
Q psy9399 171 SHLQILVLDEADRML-DMGFINDIEKIVDATP------VTRQTMLFSATLDGI 216 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~-~~~~~~~~~~~~~~~~------~~~~~i~~SAT~~~~ 216 (453)
..+++||+|=+-+.. +......+..+....+ ....++.++||....
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~ 205 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQN 205 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHH
Confidence 567899999887654 2233445555555444 445678888886543
No 382
>PF05729 NACHT: NACHT domain
Probab=94.12 E-value=0.54 Score=39.06 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=17.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhhh
Q psy9399 41 LIVSSQTGSGKTAAFMLPALHKFAS 65 (453)
Q Consensus 41 ~lv~a~TGsGKT~~~l~~~~~~l~~ 65 (453)
++|.|+.|+|||.. +.-+...+..
T Consensus 3 l~I~G~~G~GKStl-l~~~~~~~~~ 26 (166)
T PF05729_consen 3 LWISGEPGSGKSTL-LRKLAQQLAE 26 (166)
T ss_pred EEEECCCCCChHHH-HHHHHHHHHh
Confidence 78999999999974 4444444444
No 383
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.11 E-value=1.4 Score=42.95 Aligned_cols=54 Identities=9% Similarity=0.271 Sum_probs=32.7
Q ss_pred CCccEEEEechhhhcc-cCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhh
Q psy9399 171 SHLQILVLDEADRMLD-MGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENI 224 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 224 (453)
..+++||+|=+-++.. ......+..+.........++.++||...........+
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F 235 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAF 235 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHH
Confidence 3578888888865442 23455566666555555567888888764444444443
No 384
>KOG0739|consensus
Probab=94.07 E-value=0.77 Score=41.61 Aligned_cols=53 Identities=15% Similarity=0.358 Sum_probs=35.8
Q ss_pred HHHhcCC-----cEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcH
Q psy9399 33 PAAISGR-----DLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTR 107 (453)
Q Consensus 33 ~~~~~~~-----~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~ 107 (453)
|.+..|+ .+++.+|+|+||+. |.-+... ......+-+.+.
T Consensus 156 PqlFtGkR~PwrgiLLyGPPGTGKSY--LAKAVAT---------------------------------EAnSTFFSvSSS 200 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPGTGKSY--LAKAVAT---------------------------------EANSTFFSVSSS 200 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCCCcHHH--HHHHHHh---------------------------------hcCCceEEeehH
Confidence 4455553 49999999999995 3333322 122678888998
Q ss_pred HHHHHHHHHHHHH
Q psy9399 108 ELALQVTAATERY 120 (453)
Q Consensus 108 ~L~~q~~~~~~~~ 120 (453)
.|+..|..+-.++
T Consensus 201 DLvSKWmGESEkL 213 (439)
T KOG0739|consen 201 DLVSKWMGESEKL 213 (439)
T ss_pred HHHHHHhccHHHH
Confidence 9988887655543
No 385
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.05 E-value=0.11 Score=49.36 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=19.6
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHhhh
Q psy9399 37 SGRDLIVSSQTGSGKTAAFMLPALHKFA 64 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~~l~~~~~~l~ 64 (453)
.+..++|+||||||||. .+..++..+.
T Consensus 133 ~~glilI~GpTGSGKTT-tL~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKST-LLAAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHH-HHHHHHHHHh
Confidence 44569999999999997 3455555543
No 386
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=94.01 E-value=0.54 Score=44.45 Aligned_cols=42 Identities=17% Similarity=0.333 Sum_probs=28.8
Q ss_pred CCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEee
Q psy9399 170 FSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSAT 212 (453)
Q Consensus 170 ~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 212 (453)
....+++||||+|.+.... ...+.+.++--|....+|++|..
T Consensus 108 ~~~~kvviI~~a~~~~~~a-~NaLLK~LEEPp~~~~~Il~t~~ 149 (329)
T PRK08058 108 ESNKKVYIIEHADKMTASA-ANSLLKFLEEPSGGTTAILLTEN 149 (329)
T ss_pred ccCceEEEeehHhhhCHHH-HHHHHHHhcCCCCCceEEEEeCC
Confidence 4567899999999886554 44555566665666666665554
No 387
>PRK06904 replicative DNA helicase; Validated
Probab=93.98 E-value=1 Score=44.80 Aligned_cols=26 Identities=23% Similarity=0.148 Sum_probs=17.8
Q ss_pred HhcCCcEEEEcCCCchHHHHHHHHHH
Q psy9399 35 AISGRDLIVSSQTGSGKTAAFMLPAL 60 (453)
Q Consensus 35 ~~~~~~~lv~a~TGsGKT~~~l~~~~ 60 (453)
+..|.-++|.|.||.|||..++-.+.
T Consensus 218 l~~G~LiiIaarPg~GKTafalnia~ 243 (472)
T PRK06904 218 LQPSDLIIVAARPSMGKTTFAMNLCE 243 (472)
T ss_pred cCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 33444589999999999974443333
No 388
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=93.96 E-value=0.32 Score=44.22 Aligned_cols=28 Identities=29% Similarity=0.366 Sum_probs=19.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhhhh
Q psy9399 38 GRDLIVSSQTGSGKTAAFMLPALHKFAS 65 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~l~~~~~~l~~ 65 (453)
+.-+++.|.||.|||..++-.+...+..
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~ 46 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALN 46 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHh
Confidence 3459999999999998655555555443
No 389
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=93.92 E-value=0.035 Score=49.64 Aligned_cols=14 Identities=36% Similarity=0.657 Sum_probs=12.2
Q ss_pred EEEEcCCCchHHHH
Q psy9399 41 LIVSSQTGSGKTAA 54 (453)
Q Consensus 41 ~lv~a~TGsGKT~~ 54 (453)
++|.|+.|||||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999984
No 390
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=93.92 E-value=0.96 Score=42.34 Aligned_cols=60 Identities=13% Similarity=0.236 Sum_probs=36.1
Q ss_pred EEEeChHHHHHHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeec
Q psy9399 151 ILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATL 213 (453)
Q Consensus 151 Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 213 (453)
|-|-....+.+.+..... ....+++|||++|.|.... ...+.+.++--| ...+|++|..+
T Consensus 104 I~id~ir~i~~~l~~~p~-~~~~kVvII~~ae~m~~~a-aNaLLK~LEEPp-~~~fILi~~~~ 163 (314)
T PRK07399 104 IRLEQIREIKRFLSRPPL-EAPRKVVVIEDAETMNEAA-ANALLKTLEEPG-NGTLILIAPSP 163 (314)
T ss_pred CcHHHHHHHHHHHccCcc-cCCceEEEEEchhhcCHHH-HHHHHHHHhCCC-CCeEEEEECCh
Confidence 333333445555544432 3678999999999886554 445555555555 55566666554
No 391
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=93.88 E-value=1.2 Score=37.37 Aligned_cols=141 Identities=15% Similarity=0.200 Sum_probs=66.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy9399 41 LIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120 (453)
Q Consensus 41 ~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 120 (453)
+.|....|=|||.+++-.++..+.+ +.+|+++-=.+.-. ...+...+
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G~-------------------------------G~rV~ivQFlKg~~--~~GE~~~l 52 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAGH-------------------------------GMRVLIVQFLKGGR--YSGELKAL 52 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHCT-------------------------------T--EEEEESS--SS----HHHHHH
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhC-------------------------------CCEEEEEEEecCCC--CcCHHHHH
Confidence 6778889999999998888887665 66888886665511 11222222
Q ss_pred hcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEechhhhcccCC--hHHHHHHHh
Q psy9399 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGF--INDIEKIVD 198 (453)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h~~~~~~~--~~~~~~~~~ 198 (453)
.. .+.+.......+-........ .+ .......++... +.+.-..+++||+||+-...+.++ ...+..++.
T Consensus 53 ~~-l~~~~~~~~g~~f~~~~~~~~----~~--~~~~~~~~~~a~-~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~ 124 (172)
T PF02572_consen 53 KK-LPNVEIERFGKGFVWRMNEEE----ED--RAAAREGLEEAK-EAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLE 124 (172)
T ss_dssp GG-GT--EEEE--TT----GGGHH----HH--HHHHHHHHHHHH-HHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHH
T ss_pred Hh-CCeEEEEEcCCcccccCCCcH----HH--HHHHHHHHHHHH-HHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHH
Confidence 21 122333222111111000000 01 000111111111 111236799999999998888775 445666777
Q ss_pred hCCCCccEEEEEeecChHHHHHHH
Q psy9399 199 ATPVTRQTMLFSATLDGIVGNMAE 222 (453)
Q Consensus 199 ~~~~~~~~i~~SAT~~~~~~~~~~ 222 (453)
..|...-+|+..-.+|+.+...+.
T Consensus 125 ~rp~~~evVlTGR~~~~~l~e~AD 148 (172)
T PF02572_consen 125 NRPESLEVVLTGRNAPEELIEAAD 148 (172)
T ss_dssp TS-TT-EEEEE-SS--HHHHHH-S
T ss_pred cCCCCeEEEEECCCCCHHHHHhCC
Confidence 777777777776677776665554
No 392
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=93.84 E-value=0.56 Score=46.09 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=19.5
Q ss_pred HhcCCcEEEEcCCCchHHHHHHHHHHHh
Q psy9399 35 AISGRDLIVSSQTGSGKTAAFMLPALHK 62 (453)
Q Consensus 35 ~~~~~~~lv~a~TGsGKT~~~l~~~~~~ 62 (453)
+..|.-++|.|++|+|||...+-.+...
T Consensus 191 ~~~g~liviag~pg~GKT~~al~ia~~~ 218 (421)
T TIGR03600 191 LVKGDLIVIGARPSMGKTTLALNIAENV 218 (421)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 3344558999999999998555444443
No 393
>KOG0738|consensus
Probab=93.83 E-value=0.5 Score=44.43 Aligned_cols=54 Identities=22% Similarity=0.378 Sum_probs=32.4
Q ss_pred CCCCCCCCHHHHHHHHhCCCC---CC-----------c-HHHHHH-----HHHHhcC-----CcEEEEcCCCchHHHHH
Q psy9399 2 NFKSIGLHELVLKALVKVGYT---KP-----------T-GVQEQA-----IPAAISG-----RDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 2 ~~~~l~l~~~~~~~l~~~~~~---~~-----------~-~~Q~~~-----~~~~~~~-----~~~lv~a~TGsGKT~~~ 55 (453)
.|+++|....+.+.|+.--++ .. . -.++.+ +|.+.+| +.++..||+|+|||+.+
T Consensus 184 ~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLA 262 (491)
T KOG0738|consen 184 KFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLA 262 (491)
T ss_pred CCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHH
Confidence 478888888888887742111 01 1 111111 2333344 56999999999999843
No 394
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.82 E-value=0.36 Score=49.98 Aligned_cols=43 Identities=16% Similarity=0.167 Sum_probs=38.3
Q ss_pred CccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecC
Q psy9399 172 HLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLD 214 (453)
Q Consensus 172 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 214 (453)
..=++|+|..|.+.+......+..+++..|.+.+.++.|-+-|
T Consensus 129 ~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 129 GPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred CceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 3458999999999999999999999999999999999997764
No 395
>KOG1132|consensus
Probab=93.80 E-value=2.3 Score=44.38 Aligned_cols=99 Identities=19% Similarity=0.215 Sum_probs=55.4
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchh----hhhcc---ccccccchh----h
Q psy9399 23 KPTGVQEQAIPAAI----SGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPV----MKKNL---NQNNNKIYT----H 87 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~----~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~----~~~~~---~~~~~~~~~----~ 87 (453)
+|++.|...+..++ ...+.++..|||+|||++.|-..+....+.+...+. +.+.- ..-....-. +
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 58999998777766 446799999999999987655555433332211111 11100 000000000 0
Q ss_pred hhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy9399 88 KERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121 (453)
Q Consensus 88 ~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 121 (453)
.+...-..+.+++.|-.-|-.-..|+.+++++..
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 0111112346678888888877888888887754
No 396
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.79 E-value=0.43 Score=47.14 Aligned_cols=89 Identities=18% Similarity=0.256 Sum_probs=51.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATE 118 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 118 (453)
.-+++.|++|+|||...+..+... .. .+.+++|+... +-..|+.....
T Consensus 95 svilI~G~pGsGKTTL~lq~a~~~-a~------------------------------~g~kvlYvs~E-Es~~qi~~ra~ 142 (454)
T TIGR00416 95 SLILIGGDPGIGKSTLLLQVACQL-AK------------------------------NQMKVLYVSGE-ESLQQIKMRAI 142 (454)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH-Hh------------------------------cCCcEEEEECc-CCHHHHHHHHH
Confidence 348999999999998555444333 22 13478888765 44566666555
Q ss_pred HHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEechhhhc
Q psy9399 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRML 185 (453)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h~~~ 185 (453)
+++.....+. +.. -++.+.+...+.. .+.+++|+|.++.+.
T Consensus 143 rlg~~~~~l~---~~~------------------e~~~~~I~~~i~~-----~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 143 RLGLPEPNLY---VLS------------------ETNWEQICANIEE-----ENPQACVIDSIQTLY 183 (454)
T ss_pred HcCCChHHeE---EcC------------------CCCHHHHHHHHHh-----cCCcEEEEecchhhc
Confidence 5542111111 100 0123445444432 356899999999765
No 397
>PHA00729 NTP-binding motif containing protein
Probab=93.76 E-value=0.64 Score=40.89 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=14.9
Q ss_pred cEEEEcCCCchHHHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAFML 57 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~l~ 57 (453)
++++.|++|+|||..+..
T Consensus 19 nIlItG~pGvGKT~LA~a 36 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALK 36 (226)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 699999999999975433
No 398
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.75 E-value=0.44 Score=50.43 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=14.5
Q ss_pred CcEEEEcCCCchHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~ 55 (453)
+.+++.||+|+|||+.+
T Consensus 488 ~giLL~GppGtGKT~la 504 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLA 504 (733)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46999999999999743
No 399
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.70 E-value=0.44 Score=48.79 Aligned_cols=40 Identities=13% Similarity=0.253 Sum_probs=25.6
Q ss_pred CCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEE
Q psy9399 170 FSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFS 210 (453)
Q Consensus 170 ~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 210 (453)
+...+++||||+|.+.... ...+...++.-+....+|+++
T Consensus 125 ~~~~KVvIIdEad~Lt~~a-~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAA-FNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred cCCCEEEEEeChhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 4678899999999986543 234444455544555555555
No 400
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=93.69 E-value=0.045 Score=46.49 Aligned_cols=46 Identities=22% Similarity=0.274 Sum_probs=31.0
Q ss_pred HHHhcCCCCEEEeChHHHHHHHhcCCCC--CCCccEEEEechhhhccc
Q psy9399 142 MQLLSRNPEILLATPGRLIDHMNSGKIN--FSHLQILVLDEADRMLDM 187 (453)
Q Consensus 142 ~~~~~~~~~Ilv~T~~~l~~~l~~~~~~--~~~~~~iIiDE~h~~~~~ 187 (453)
.+.....++|+|+++..|+.-....... ..+-.+|||||||.+.+.
T Consensus 113 ~r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 113 ARELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp HHHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGGG
T ss_pred HHHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHHH
Confidence 3444557899999999987754433221 234579999999998754
No 401
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=93.54 E-value=1.5 Score=42.03 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=28.8
Q ss_pred CCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEee--cChHHHHHHHhhcCCC
Q psy9399 171 SHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSAT--LDGIVGNMAENITKDP 228 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT--~~~~~~~~~~~~~~~~ 228 (453)
..++++++||+-...+..+...+.......... ..++.|.| +...+..+........
T Consensus 96 ~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~p~~~~~~~~~~~~~~~~~~ 154 (384)
T PF03237_consen 96 FEYDLIIIDEAAKVPDDAFSELIRRLRATWGGS-IRMYISTPPNPGGWFYEIFQRNLDDD 154 (384)
T ss_dssp S--SEEEEESGGGSTTHHHHHHHHHHHHCSTT---EEEEEE---SSSHHHHHHHHHHCTS
T ss_pred cccceeeeeecccCchHHHHHHHHhhhhcccCc-ceEEeecCCCCCCceeeeeehhhcCC
Confidence 568899999988776554444444444333322 22244443 3445555555444444
No 402
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=93.47 E-value=0.73 Score=44.10 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=15.4
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAFMLPA 59 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~l~~~ 59 (453)
..++.||.|+|||..+...+
T Consensus 38 ~~Ll~G~~G~GKt~~a~~la 57 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARIFA 57 (355)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999997554443
No 403
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.38 E-value=1.8 Score=40.07 Aligned_cols=52 Identities=17% Similarity=0.316 Sum_probs=34.4
Q ss_pred CCccEEEEechhhhccc-CChHHHHHHHhhCCCCc------cEEEEEeecChHHHHHHH
Q psy9399 171 SHLQILVLDEADRMLDM-GFINDIEKIVDATPVTR------QTMLFSATLDGIVGNMAE 222 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~~~-~~~~~~~~~~~~~~~~~------~~i~~SAT~~~~~~~~~~ 222 (453)
+++++|++|=|-++-+. .....+..+.+.+.+.. -++.+-||.....-..++
T Consensus 220 r~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk 278 (340)
T COG0552 220 RGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAK 278 (340)
T ss_pred cCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHH
Confidence 67899999999888754 36667777776655433 344558988754444443
No 404
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.36 E-value=0.064 Score=48.79 Aligned_cols=17 Identities=35% Similarity=0.524 Sum_probs=14.8
Q ss_pred CcEEEEcCCCchHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~ 55 (453)
.|+++.||||||||+.+
T Consensus 98 SNILLiGPTGsGKTlLA 114 (408)
T COG1219 98 SNILLIGPTGSGKTLLA 114 (408)
T ss_pred ccEEEECCCCCcHHHHH
Confidence 57999999999999744
No 405
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=93.28 E-value=0.49 Score=45.54 Aligned_cols=29 Identities=21% Similarity=0.230 Sum_probs=22.2
Q ss_pred HHHhcCCcEEEEcCCCchHHHHHHHHHHH
Q psy9399 33 PAAISGRDLIVSSQTGSGKTAAFMLPALH 61 (453)
Q Consensus 33 ~~~~~~~~~lv~a~TGsGKT~~~l~~~~~ 61 (453)
+.+..+.|++..||+|+|||..|......
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHhHH
Confidence 55667789999999999999766543333
No 406
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=93.27 E-value=0.21 Score=44.27 Aligned_cols=55 Identities=15% Similarity=0.343 Sum_probs=29.0
Q ss_pred ChHHHHHHHhcCCCCCCCccEEEEechhhhc-c----cCChHHHHHHHhhCCC-CccEEEEEeec
Q psy9399 155 TPGRLIDHMNSGKINFSHLQILVLDEADRML-D----MGFINDIEKIVDATPV-TRQTMLFSATL 213 (453)
Q Consensus 155 T~~~l~~~l~~~~~~~~~~~~iIiDE~h~~~-~----~~~~~~~~~~~~~~~~-~~~~i~~SAT~ 213 (453)
+...++..+...... -+||+||+|.+. . ..+...+..++..... ....+.++++.
T Consensus 105 ~l~~~~~~l~~~~~~----~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 105 ALERLLEKLKKKGKK----VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp -HHHHHHHHHHCHCC----EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred HHHHHHHHHHhcCCc----EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 344455555443211 689999999988 2 2244555555555222 22345556664
No 407
>PRK13764 ATPase; Provisional
Probab=93.27 E-value=0.18 Score=51.11 Aligned_cols=27 Identities=19% Similarity=0.466 Sum_probs=20.2
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHhhh
Q psy9399 37 SGRDLIVSSQTGSGKTAAFMLPALHKFA 64 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~~l~~~~~~l~ 64 (453)
..++++++||||||||. ++..++..+.
T Consensus 256 ~~~~ILIsG~TGSGKTT-ll~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKST-FAQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHH-HHHHHHHHHh
Confidence 35679999999999997 4555555544
No 408
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.23 E-value=0.24 Score=45.18 Aligned_cols=45 Identities=27% Similarity=0.366 Sum_probs=29.5
Q ss_pred HHHhCCCCCCcHHHHHHHHHHhc-C-CcEEEEcCCCchHHHHHHHHHHHhh
Q psy9399 15 ALVKVGYTKPTGVQEQAIPAAIS-G-RDLIVSSQTGSGKTAAFMLPALHKF 63 (453)
Q Consensus 15 ~l~~~~~~~~~~~Q~~~~~~~~~-~-~~~lv~a~TGsGKT~~~l~~~~~~l 63 (453)
.|.++|+ .+.|.+.+..+.. . ..+++.|+||||||. .+..++..+
T Consensus 58 ~l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT-~l~all~~i 104 (264)
T cd01129 58 DLEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTT-TLYSALSEL 104 (264)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHH-HHHHHHhhh
Confidence 4566665 4556666665553 3 358999999999997 444454443
No 409
>KOG0298|consensus
Probab=93.22 E-value=0.18 Score=54.13 Aligned_cols=102 Identities=18% Similarity=0.201 Sum_probs=79.3
Q ss_pred HHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCcc-EEEEeCCcccCCCCCCCcEE
Q psy9399 263 LLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIK-ILVATDVAARGIDVPAITHV 341 (453)
Q Consensus 263 l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~-vLv~T~~~~~Gvdi~~~~~V 341 (453)
+.-.+...++|+|+......+.+...+...++......++ ++-...+..|++ ++ .|+-++..+.|+|+-+..+|
T Consensus 1215 iK~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t---~d~~dc~~~fk~--I~clll~~~~~~~GLNL~eA~Hv 1289 (1394)
T KOG0298|consen 1215 IKFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGET---EDFDDCIICFKS--IDCLLLFVSKGSKGLNLIEATHV 1289 (1394)
T ss_pred HhccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccCC---cchhhhhhhccc--ceEEEEEeccCcccccHHhhhhh
Confidence 3334555789999988888888888888777765444332 234556666766 44 55777889999999999999
Q ss_pred EEcCCCCChhHHHHHhhhccCCCCCccE
Q psy9399 342 FNYDLPKFPEDYVHRIGRTGRAGRNGFA 369 (453)
Q Consensus 342 i~~~~~~~~~~~~Q~~GR~~R~g~~g~~ 369 (453)
+..++-.++.+-.|.+||+.|.|+...+
T Consensus 1290 fl~ePiLN~~~E~QAigRvhRiGQ~~pT 1317 (1394)
T KOG0298|consen 1290 FLVEPILNPGDEAQAIGRVHRIGQKRPT 1317 (1394)
T ss_pred heeccccCchHHHhhhhhhhhcccccch
Confidence 9999999999999999999999988443
No 410
>PHA00350 putative assembly protein
Probab=93.19 E-value=0.59 Score=44.87 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=17.2
Q ss_pred EEEEcCCCchHHHHHHHH-HHHhhh
Q psy9399 41 LIVSSQTGSGKTAAFMLP-ALHKFA 64 (453)
Q Consensus 41 ~lv~a~TGsGKT~~~l~~-~~~~l~ 64 (453)
.++.|..|||||+.++.. ++..+.
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk 28 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALK 28 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHH
Confidence 578999999999876653 444433
No 411
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.18 E-value=0.29 Score=41.97 Aligned_cols=37 Identities=30% Similarity=0.438 Sum_probs=26.9
Q ss_pred HHhCCCCCCcHHHHHHHHHHh-cCCcEEEEcCCCchHHHH
Q psy9399 16 LVKVGYTKPTGVQEQAIPAAI-SGRDLIVSSQTGSGKTAA 54 (453)
Q Consensus 16 l~~~~~~~~~~~Q~~~~~~~~-~~~~~lv~a~TGsGKT~~ 54 (453)
|.+.|. +++.|.+.+.... .+..+++.||||||||..
T Consensus 4 l~~~g~--~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 4 LIAQGT--FSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred HHHcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 334444 5677777766655 567799999999999973
No 412
>KOG0732|consensus
Probab=93.07 E-value=0.24 Score=52.78 Aligned_cols=53 Identities=19% Similarity=0.169 Sum_probs=35.6
Q ss_pred CCCCCCCCHHHHHHHHhCCCCC-CcHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q psy9399 2 NFKSIGLHELVLKALVKVGYTK-PTGVQEQAIPAAISGRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 2 ~~~~l~l~~~~~~~l~~~~~~~-~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~ 55 (453)
+|+++|....++..|+.+-+.- ++|-+..-+ .+-..+.+++++|.|+|||+.+
T Consensus 263 ~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~-~itpPrgvL~~GppGTGkTl~a 316 (1080)
T KOG0732|consen 263 GFDSVGGLENYINQLKEMVLLPLLYPEFFDNF-NITPPRGVLFHGPPGTGKTLMA 316 (1080)
T ss_pred CccccccHHHHHHHHHHHHHhHhhhhhHhhhc-ccCCCcceeecCCCCCchhHHH
Confidence 7999999888888888754432 222222111 2233466999999999999853
No 413
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.06 E-value=1.7 Score=43.46 Aligned_cols=79 Identities=20% Similarity=0.241 Sum_probs=63.8
Q ss_pred CCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCC-cccC------C-CCCCCcE
Q psy9399 269 VGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDV-AARG------I-DVPAITH 340 (453)
Q Consensus 269 ~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~~~G------v-di~~~~~ 340 (453)
++.+||++++++-+....+.|...++.+..++++.+..++..++.....|+.+++++|.- +... + ....+.+
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~ 130 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITL 130 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCE
Confidence 467999999999999999999999999999999999999999999999999999999952 2222 2 3456777
Q ss_pred EEEcCCC
Q psy9399 341 VFNYDLP 347 (453)
Q Consensus 341 Vi~~~~~ 347 (453)
||.....
T Consensus 131 iViDEaH 137 (470)
T TIGR00614 131 IAVDEAH 137 (470)
T ss_pred EEEeCCc
Confidence 7664443
No 414
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=93.04 E-value=1.2 Score=46.20 Aligned_cols=148 Identities=19% Similarity=0.232 Sum_probs=82.8
Q ss_pred HHHhCCCCCCcHHHHHHHHHHhcCC--cEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcc
Q psy9399 15 ALVKVGYTKPTGVQEQAIPAAISGR--DLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLR 92 (453)
Q Consensus 15 ~l~~~~~~~~~~~Q~~~~~~~~~~~--~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (453)
.+......+...-|.+.+..+++.+ -+++.|.=|=|||.+.-+.+. .+.+
T Consensus 206 ~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~-~~~~--------------------------- 257 (758)
T COG1444 206 ELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALA-AAAR--------------------------- 257 (758)
T ss_pred HHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHH-HHHH---------------------------
Confidence 3444444455555556666666654 488999999999976655552 2222
Q ss_pred cCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEEC--CCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCC
Q psy9399 93 FKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILG--GMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINF 170 (453)
Q Consensus 93 ~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~ 170 (453)
.....+++|..|+.+-++.+++.+.+-....+ ++...... |.... .......|=.-+|....
T Consensus 258 -~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg-~~~~v~~d~~g~~~~----~~~~~~~i~y~~P~~a~---------- 321 (758)
T COG1444 258 -LAGSVRIIVTAPTPANVQTLFEFAGKGLEFLG-YKRKVAPDALGEIRE----VSGDGFRIEYVPPDDAQ---------- 321 (758)
T ss_pred -hcCCceEEEeCCCHHHHHHHHHHHHHhHHHhC-Cccccccccccceee----ecCCceeEEeeCcchhc----------
Confidence 11135899999999988887766554332221 11111000 10000 00011223344443321
Q ss_pred CCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecC
Q psy9399 171 SHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLD 214 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 214 (453)
..-+++|+|||=.+. ...+..+....+ .+++|.|+.
T Consensus 322 ~~~DllvVDEAAaIp----lplL~~l~~~~~----rv~~sTTIh 357 (758)
T COG1444 322 EEADLLVVDEAAAIP----LPLLHKLLRRFP----RVLFSTTIH 357 (758)
T ss_pred ccCCEEEEehhhcCC----hHHHHHHHhhcC----ceEEEeeec
Confidence 127899999998663 455556665543 688999984
No 415
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=93.01 E-value=0.91 Score=38.25 Aligned_cols=53 Identities=15% Similarity=0.329 Sum_probs=38.6
Q ss_pred CCccEEEEechhhhcccCC--hHHHHHHHhhCCCCccEEEEEeecChHHHHHHHh
Q psy9399 171 SHLQILVLDEADRMLDMGF--INDIEKIVDATPVTRQTMLFSATLDGIVGNMAEN 223 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~ 223 (453)
..+++||+||.--.+..++ .+.+..++...|....+|+..-..++.+-..+..
T Consensus 121 ~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADl 175 (198)
T COG2109 121 GKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADL 175 (198)
T ss_pred CCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHH
Confidence 4699999999998777775 4566777777777777777666667666665543
No 416
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=92.98 E-value=0.6 Score=46.14 Aligned_cols=39 Identities=21% Similarity=0.362 Sum_probs=24.2
Q ss_pred CCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEE
Q psy9399 171 SHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFS 210 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 210 (453)
...+++||||+|.+.... ...+...++.-+....+|+.+
T Consensus 120 ~~~kvvIIdead~lt~~~-~n~LLk~lEep~~~~~~Il~t 158 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEA-FNSLLKTLEEPPQHVKFFLAT 158 (451)
T ss_pred CCCEEEEEecHHhhCHHH-HHHHHHHhhcCCCCceEEEEe
Confidence 567899999999886543 234444455444444455544
No 417
>PRK09354 recA recombinase A; Provisional
Probab=92.96 E-value=0.23 Score=46.75 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=23.9
Q ss_pred HHHHHhc-C-----CcEEEEcCCCchHHHHHHHHHHHhh
Q psy9399 31 AIPAAIS-G-----RDLIVSSQTGSGKTAAFMLPALHKF 63 (453)
Q Consensus 31 ~~~~~~~-~-----~~~lv~a~TGsGKT~~~l~~~~~~l 63 (453)
.++.++. | .-+.|.||+|+|||...+..+....
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~ 85 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQ 85 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4556665 3 3488999999999987766665543
No 418
>KOG0741|consensus
Probab=92.94 E-value=1.6 Score=42.95 Aligned_cols=50 Identities=22% Similarity=0.272 Sum_probs=30.2
Q ss_pred CCCCCHHHHHHHHhCCCCCCcHHHHHHHHH-------HhcC-----CcEEEEcCCCchHHHH
Q psy9399 5 SIGLHELVLKALVKVGYTKPTGVQEQAIPA-------AISG-----RDLIVSSQTGSGKTAA 54 (453)
Q Consensus 5 ~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~-------~~~~-----~~~lv~a~TGsGKT~~ 54 (453)
.+|.+++-.+.+...|+-.-.+.=.+.+.. +.+. -.+++.||.|||||..
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaL 554 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTAL 554 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHH
Confidence 457777777777666654433333333222 2222 2489999999999953
No 419
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=92.91 E-value=0.67 Score=47.07 Aligned_cols=23 Identities=30% Similarity=0.163 Sum_probs=17.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q psy9399 41 LIVSSQTGSGKTAAFMLPALHKF 63 (453)
Q Consensus 41 ~lv~a~TGsGKT~~~l~~~~~~l 63 (453)
.++.||.|+|||.++...+....
T Consensus 41 yLf~Gp~G~GKTt~Ar~lAk~L~ 63 (563)
T PRK06647 41 YIFSGPRGVGKTSSARAFARCLN 63 (563)
T ss_pred EEEECCCCCCHHHHHHHHHHhhc
Confidence 78999999999987666554443
No 420
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.89 E-value=1.1 Score=46.09 Aligned_cols=40 Identities=18% Similarity=0.314 Sum_probs=26.8
Q ss_pred CCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEE
Q psy9399 170 FSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFS 210 (453)
Q Consensus 170 ~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 210 (453)
+...+++||||+|.+.... ...+...++.-+....+|+.+
T Consensus 119 ~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~tifIL~t 158 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYAIFILAT 158 (614)
T ss_pred cCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 5678999999999986543 344555555555555555544
No 421
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=92.88 E-value=0.26 Score=49.13 Aligned_cols=45 Identities=27% Similarity=0.380 Sum_probs=29.8
Q ss_pred HHHhCCCCCCcHHHHHHHHHHhcC-C-cEEEEcCCCchHHHHHHHHHHHhh
Q psy9399 15 ALVKVGYTKPTGVQEQAIPAAISG-R-DLIVSSQTGSGKTAAFMLPALHKF 63 (453)
Q Consensus 15 ~l~~~~~~~~~~~Q~~~~~~~~~~-~-~~lv~a~TGsGKT~~~l~~~~~~l 63 (453)
.|.++|+ .+.|.+.+..+... + -++++||||||||.. +..++..+
T Consensus 220 ~l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTt-L~a~L~~l 266 (486)
T TIGR02533 220 DLETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTT-LYAALSRL 266 (486)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH-HHHHHhcc
Confidence 4555665 46667677666543 3 388999999999974 44455544
No 422
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=92.76 E-value=0.63 Score=48.95 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=14.8
Q ss_pred CcEEEEcCCCchHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~ 55 (453)
.++++.||+|+|||..+
T Consensus 208 ~n~LLvGppGvGKT~la 224 (758)
T PRK11034 208 NNPLLVGESGVGKTAIA 224 (758)
T ss_pred CCeEEECCCCCCHHHHH
Confidence 47999999999999754
No 423
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=92.73 E-value=2.1 Score=37.13 Aligned_cols=75 Identities=19% Similarity=0.156 Sum_probs=52.1
Q ss_pred CCCcEEEEeccchhHHHHHHHHhh----CCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCC-----c-ccCCCCCC
Q psy9399 268 RVGQAVVFTATKRDADIIADRLNI----SGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDV-----A-ARGIDVPA 337 (453)
Q Consensus 268 ~~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-----~-~~Gvdi~~ 337 (453)
.+.+++|.++++..+...+..+.. .+..+..++|+.+..+...... +..+|+|+|.- + ..-.++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhh
Confidence 456899999999988887776654 3677788899887655443332 56789999942 2 22256677
Q ss_pred CcEEEEcCC
Q psy9399 338 ITHVFNYDL 346 (453)
Q Consensus 338 ~~~Vi~~~~ 346 (453)
++++|..+.
T Consensus 144 l~~lIvDE~ 152 (203)
T cd00268 144 VKYLVLDEA 152 (203)
T ss_pred CCEEEEeCh
Confidence 888776554
No 424
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=92.70 E-value=2.8 Score=42.16 Aligned_cols=144 Identities=14% Similarity=0.161 Sum_probs=81.9
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCc
Q psy9399 19 VGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP 98 (453)
Q Consensus 19 ~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
+++..++. ..+.. .+.+-.+.--|=--|||. ++.|++..+.. .-.+-
T Consensus 187 Fdi~~~s~---~~l~~-FKQkaTVFLVPRRHGKTW-f~VpiIsllL~----------------------------s~~gI 233 (668)
T PHA03372 187 FDIEFLSE---SSLNI-FKQKATVFLVPRRHGKTW-FIIPIISFLLK----------------------------NIIGI 233 (668)
T ss_pred cCCcccCH---HHHHH-hhccceEEEecccCCcee-hHHHHHHHHHH----------------------------hhcCc
Confidence 55554443 22322 234567788899999998 78888888877 34567
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHh-cccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHH-----HHHHHhcCCCCCCC
Q psy9399 99 RMLVLTPTRELALQVTAATERYG-LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGR-----LIDHMNSGKINFSH 172 (453)
Q Consensus 99 ~~lil~P~~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~-----l~~~l~~~~~~~~~ 172 (453)
++.|+..-+-.++-+.+++.... +.++.-.+... ++-.|.+.-|+. +......+...-+.
T Consensus 234 ~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~--------------k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~ 299 (668)
T PHA03372 234 SIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIEN--------------KDNVISIDHRGAKSTALFASCYNTNSIRGQN 299 (668)
T ss_pred eEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeee--------------cCcEEEEecCCCcceeeehhhccCccccCCC
Confidence 99999998887777666554322 11121111111 111233333321 11122333444578
Q ss_pred ccEEEEechhhhcccCChHHHHHHHhhC-CCCccEEEEEeec
Q psy9399 173 LQILVLDEADRMLDMGFINDIEKIVDAT-PVTRQTMLFSATL 213 (453)
Q Consensus 173 ~~~iIiDE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~~SAT~ 213 (453)
++++++||||-+... .+..++..+ ..++.+|++|.|-
T Consensus 300 fnll~VDEA~FI~~~----a~~tilgfm~q~~~KiIfISS~N 337 (668)
T PHA03372 300 FHLLLVDEAHFIKKD----AFNTILGFLAQNTTKIIFISSTN 337 (668)
T ss_pred CCEEEEehhhccCHH----HHHHhhhhhcccCceEEEEeCCC
Confidence 999999999954322 223333322 3456788888774
No 425
>PRK04841 transcriptional regulator MalT; Provisional
Probab=92.69 E-value=1.4 Score=48.14 Aligned_cols=43 Identities=14% Similarity=0.192 Sum_probs=34.0
Q ss_pred CccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecC
Q psy9399 172 HLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLD 214 (453)
Q Consensus 172 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 214 (453)
.--+||+|++|.+.+......+..++...+...++|+.|-+.+
T Consensus 121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 121 QPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 3458999999988666666788888888888888888887744
No 426
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=92.68 E-value=1.1 Score=44.25 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=18.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHh
Q psy9399 38 GRDLIVSSQTGSGKTAAFMLPALHK 62 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~l~~~~~~ 62 (453)
|.-++|.|++|+|||...+-.+...
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~ 219 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENA 219 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHH
Confidence 3458999999999997555444443
No 427
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=92.68 E-value=0.32 Score=45.98 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=15.2
Q ss_pred CcEEEEcCCCchHHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAFM 56 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l 56 (453)
.++++.||+|+|||..+.
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 459999999999998544
No 428
>PRK08506 replicative DNA helicase; Provisional
Probab=92.60 E-value=0.95 Score=45.07 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=18.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHh
Q psy9399 38 GRDLIVSSQTGSGKTAAFMLPALHK 62 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~l~~~~~~ 62 (453)
|.-++|.|.||.|||..++-.+...
T Consensus 192 G~LivIaarpg~GKT~fal~ia~~~ 216 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLCLNMALKA 216 (472)
T ss_pred CceEEEEcCCCCChHHHHHHHHHHH
Confidence 3458999999999997555544443
No 429
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=92.58 E-value=0.19 Score=46.11 Aligned_cols=29 Identities=28% Similarity=0.480 Sum_probs=21.4
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHHhhhh
Q psy9399 36 ISGRDLIVSSQTGSGKTAAFMLPALHKFAS 65 (453)
Q Consensus 36 ~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~ 65 (453)
..+.+++++|+||||||. ++..++..+..
T Consensus 125 ~~~~~ili~G~tGSGKTT-~l~all~~i~~ 153 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTT-LLNALLEEIPP 153 (270)
T ss_dssp HTTEEEEEEESTTSSHHH-HHHHHHHHCHT
T ss_pred ccceEEEEECCCccccch-HHHHHhhhccc
Confidence 345779999999999997 45555655443
No 430
>PRK10436 hypothetical protein; Provisional
Probab=92.51 E-value=0.27 Score=48.50 Aligned_cols=45 Identities=31% Similarity=0.429 Sum_probs=28.8
Q ss_pred HHHhCCCCCCcHHHHHHHHHHhc--CCcEEEEcCCCchHHHHHHHHHHHhh
Q psy9399 15 ALVKVGYTKPTGVQEQAIPAAIS--GRDLIVSSQTGSGKTAAFMLPALHKF 63 (453)
Q Consensus 15 ~l~~~~~~~~~~~Q~~~~~~~~~--~~~~lv~a~TGsGKT~~~l~~~~~~l 63 (453)
.|.++|+ .+.|.+.+..+.. +.-++++||||||||.+ +..++..+
T Consensus 196 ~L~~LG~---~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTt-L~a~l~~~ 242 (462)
T PRK10436 196 DLETLGM---TPAQLAQFRQALQQPQGLILVTGPTGSGKTVT-LYSALQTL 242 (462)
T ss_pred CHHHcCc---CHHHHHHHHHHHHhcCCeEEEECCCCCChHHH-HHHHHHhh
Confidence 3455554 3556666665543 34599999999999984 34455554
No 431
>PF12846 AAA_10: AAA-like domain
Probab=92.49 E-value=0.18 Score=46.86 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=18.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHh
Q psy9399 39 RDLIVSSQTGSGKTAAFMLPALHK 62 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~~~~~~ 62 (453)
.+++|.|+||+|||......+.+.
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~ 25 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQL 25 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 578999999999998666444333
No 432
>KOG0701|consensus
Probab=92.34 E-value=0.087 Score=58.45 Aligned_cols=93 Identities=23% Similarity=0.355 Sum_probs=74.6
Q ss_pred cEEEEeccchhHHHHHHHHhhCC-CceeecCCCCC-----------HHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCC
Q psy9399 271 QAVVFTATKRDADIIADRLNISG-FLAAPLHGDLH-----------QNARNRTLENLRRGRIKILVATDVAARGIDVPAI 338 (453)
Q Consensus 271 ~~lvf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~-----------~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~ 338 (453)
-.++|++.+..+....+.+.... ..+..+.|.+. ...+..++..|...++++|++|.++.+|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 45899999999999888887532 22222333321 1125678889999999999999999999999999
Q ss_pred cEEEEcCCCCChhHHHHHhhhccCC
Q psy9399 339 THVFNYDLPKFPEDYVHRIGRTGRA 363 (453)
Q Consensus 339 ~~Vi~~~~~~~~~~~~Q~~GR~~R~ 363 (453)
+.++.++.|.....|+|..||+-+.
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccc
Confidence 9999999999999999999998665
No 433
>KOG0730|consensus
Probab=92.34 E-value=0.91 Score=45.72 Aligned_cols=52 Identities=17% Similarity=0.244 Sum_probs=34.0
Q ss_pred CCCCCCCCCHHHHHHHHh---CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q psy9399 1 MNFKSIGLHELVLKALVK---VGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~---~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~ 55 (453)
.+|++.|=-+++...|++ .....|-.+..-. +...+.+++.||+|+|||+.+
T Consensus 431 v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~G---i~ppkGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 431 VSWDDIGGLEELKRELQQAVEWPLKHPEKFARFG---ISPPKGVLLYGPPGCGKTLLA 485 (693)
T ss_pred CChhhccCHHHHHHHHHHHHhhhhhchHHHHHhc---CCCCceEEEECCCCcchHHHH
Confidence 478888877777777775 2333333333222 123367999999999999854
No 434
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.33 E-value=7.4 Score=36.50 Aligned_cols=45 Identities=18% Similarity=0.388 Sum_probs=27.6
Q ss_pred CCccEEEEechhhhcc-cCChHHHHHHHhhC------CCCccEEEEEeecCh
Q psy9399 171 SHLQILVLDEADRMLD-MGFINDIEKIVDAT------PVTRQTMLFSATLDG 215 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~~-~~~~~~~~~~~~~~------~~~~~~i~~SAT~~~ 215 (453)
.++++||+|=+-++.. ......+..+.... .....++.++||...
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~ 246 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ 246 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh
Confidence 5689999999887653 22344555554422 223357888888653
No 435
>PRK14701 reverse gyrase; Provisional
Probab=92.05 E-value=0.9 Score=51.90 Aligned_cols=61 Identities=16% Similarity=0.248 Sum_probs=53.4
Q ss_pred CCCcEEEEeccchhHHHHHHHHhh------CCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCC
Q psy9399 268 RVGQAVVFTATKRDADIIADRLNI------SGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDV 328 (453)
Q Consensus 268 ~~~~~lvf~~~~~~~~~l~~~L~~------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~ 328 (453)
.+.+++|.+++++-+..+++.|+. .+..+..+||+++..++..+++.+.+|+.+|||+|..
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 456899999999999999998876 2456788999999999999999999999999999954
No 436
>PRK08840 replicative DNA helicase; Provisional
Probab=92.05 E-value=2.3 Score=42.18 Aligned_cols=31 Identities=19% Similarity=0.135 Sum_probs=20.1
Q ss_pred HHHHHhcCCcEEEEcCCCchHHHHHHHHHHH
Q psy9399 31 AIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61 (453)
Q Consensus 31 ~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~ 61 (453)
.+.-+..|.-+++.|.||.|||..++-.+..
T Consensus 210 ~~~G~~~g~LiviaarPg~GKTafalnia~~ 240 (464)
T PRK08840 210 KTAGLQGSDLIIVAARPSMGKTTFAMNLCEN 240 (464)
T ss_pred hhcCCCCCceEEEEeCCCCchHHHHHHHHHH
Confidence 3333334455899999999999755444333
No 437
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=92.00 E-value=0.18 Score=48.67 Aligned_cols=137 Identities=16% Similarity=0.111 Sum_probs=73.3
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceE
Q psy9399 21 YTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRM 100 (453)
Q Consensus 21 ~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (453)
+..+...|.++.-..-.|.- .|.|=.|||||.+.++-+.. ++. ..+.-++
T Consensus 160 IanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~-lh~----------------------------knPd~~I 209 (660)
T COG3972 160 IANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAE-LHS----------------------------KNPDSRI 209 (660)
T ss_pred HhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHH-Hhc----------------------------CCCCceE
Confidence 33455666665433333333 67888999999854444433 332 2234489
Q ss_pred EEEcCcHHHHHHHHHHHHHHhccc----CC---eeEEEEECCCchHH---HHHHhcCCCCEEEeC----hHHHHHHHhcC
Q psy9399 101 LVLTPTRELALQVTAATERYGLYM----KK---IKAISILGGMPYLR---QMQLLSRNPEILLAT----PGRLIDHMNSG 166 (453)
Q Consensus 101 lil~P~~~L~~q~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~---~~~~~~~~~~Ilv~T----~~~l~~~l~~~ 166 (453)
++-+-|+.|..++.+.+.+|.... ++ ..+.--.||..... ..+....-..+-++- ....+..+.+.
T Consensus 210 ~~Tfftk~L~s~~r~lv~~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~ 289 (660)
T COG3972 210 AFTFFTKILASTMRTLVPEFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIAD 289 (660)
T ss_pred EEEeehHHHHHHHHHHHHHHHHHHhhcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHh
Confidence 999999999999888777764211 11 22222233433221 111111111222221 22233333332
Q ss_pred CCCCCCccEEEEechhhhccc
Q psy9399 167 KINFSHLQILVLDEADRMLDM 187 (453)
Q Consensus 167 ~~~~~~~~~iIiDE~h~~~~~ 187 (453)
.....-+++|.+||.+.+.+.
T Consensus 290 ~~~~~~yD~ilIDE~QDFP~~ 310 (660)
T COG3972 290 INNKKAYDYILIDESQDFPQS 310 (660)
T ss_pred hhccccccEEEecccccCCHH
Confidence 223567899999999987654
No 438
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=91.89 E-value=3.7 Score=39.22 Aligned_cols=45 Identities=13% Similarity=0.039 Sum_probs=27.3
Q ss_pred CCccEEEEechhhhcccCChHHHHHHHhh-CCCCccEEEEEeecChH
Q psy9399 171 SHLQILVLDEADRMLDMGFINDIEKIVDA-TPVTRQTMLFSATLDGI 216 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~-~~~~~~~i~~SAT~~~~ 216 (453)
....+|.|||+|. .|-+-...+..++.. +.....+|++|-++|+.
T Consensus 126 ~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~ 171 (362)
T PF03969_consen 126 KESRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPED 171 (362)
T ss_pred hcCCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHH
Confidence 4567999999993 344433444444443 34455677777777653
No 439
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=91.85 E-value=0.44 Score=43.30 Aligned_cols=27 Identities=11% Similarity=0.074 Sum_probs=20.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhhh
Q psy9399 38 GRDLIVSSQTGSGKTAAFMLPALHKFA 64 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~l~~~~~~l~ 64 (453)
+.-++|.|++|+|||...+..+.+.+.
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~ 62 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQAS 62 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 345999999999999876666655443
No 440
>PRK09087 hypothetical protein; Validated
Probab=91.77 E-value=0.55 Score=41.68 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=13.8
Q ss_pred cEEEEcCCCchHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAF 55 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~ 55 (453)
.++++||+|+|||...
T Consensus 46 ~l~l~G~~GsGKThLl 61 (226)
T PRK09087 46 VVVLAGPVGSGKTHLA 61 (226)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4999999999999743
No 441
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=91.73 E-value=0.26 Score=44.75 Aligned_cols=41 Identities=27% Similarity=0.509 Sum_probs=28.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHH
Q psy9399 41 LIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELA 110 (453)
Q Consensus 41 ~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~ 110 (453)
.+|.||||+||+- +++.+..... +.+....|++|+|++..+
T Consensus 90 ~~VYGPTG~GKSq-----LlRNLis~~l------------------------I~P~PETVfFItP~~~mI 130 (369)
T PF02456_consen 90 GVVYGPTGSGKSQ-----LLRNLISCQL------------------------IQPPPETVFFITPQKDMI 130 (369)
T ss_pred EEEECCCCCCHHH-----HHHHhhhcCc------------------------ccCCCCceEEECCCCCCC
Confidence 7889999999996 2333332221 144566899999987766
No 442
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.72 E-value=0.62 Score=41.46 Aligned_cols=15 Identities=40% Similarity=0.620 Sum_probs=13.2
Q ss_pred cEEEEcCCCchHHHH
Q psy9399 40 DLIVSSQTGSGKTAA 54 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~ 54 (453)
-++++|+|||||+..
T Consensus 129 LviiVGaTGSGKSTt 143 (375)
T COG5008 129 LVIIVGATGSGKSTT 143 (375)
T ss_pred eEEEECCCCCCchhh
Confidence 389999999999975
No 443
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=91.72 E-value=1.8 Score=45.91 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=14.8
Q ss_pred CcEEEEcCCCchHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~ 55 (453)
.++++.||+|+|||..+
T Consensus 204 ~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CceEEECCCCCCHHHHH
Confidence 46999999999999754
No 444
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=91.69 E-value=1.5 Score=36.91 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=31.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy9399 41 LIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120 (453)
Q Consensus 41 ~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 120 (453)
++|.|++|||||..+...+.. .+.+++|+.....+-..+.+.+.++
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~----------------------------------~~~~~~y~at~~~~d~em~~rI~~H 47 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE----------------------------------LGGPVTYIATAEAFDDEMAERIARH 47 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh----------------------------------cCCCeEEEEccCcCCHHHHHHHHHH
Confidence 589999999999855444332 1347888877777766666666654
No 445
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=91.64 E-value=0.54 Score=44.49 Aligned_cols=47 Identities=28% Similarity=0.329 Sum_probs=30.8
Q ss_pred HHHHHhCCCCCCcHHHHHHHHHHh-cCCcEEEEcCCCchHHHHHHHHHHHh
Q psy9399 13 LKALVKVGYTKPTGVQEQAIPAAI-SGRDLIVSSQTGSGKTAAFMLPALHK 62 (453)
Q Consensus 13 ~~~l~~~~~~~~~~~Q~~~~~~~~-~~~~~lv~a~TGsGKT~~~l~~~~~~ 62 (453)
.+.|.+.|. +++.+.+.+..+. .+.+++++|+||+|||. ++..++..
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTT-ll~al~~~ 201 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTT-LLSALLAL 201 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHcc
Confidence 344555555 4566666666554 45689999999999997 34444433
No 446
>PRK04328 hypothetical protein; Provisional
Probab=91.61 E-value=0.36 Score=43.59 Aligned_cols=28 Identities=14% Similarity=0.124 Sum_probs=20.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhhhh
Q psy9399 38 GRDLIVSSQTGSGKTAAFMLPALHKFAS 65 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~l~~~~~~l~~ 65 (453)
+..++|.|++|+|||...+..+.+.+.+
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~ 50 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQM 50 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 3459999999999998666666665443
No 447
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=91.50 E-value=2.6 Score=38.71 Aligned_cols=45 Identities=29% Similarity=0.374 Sum_probs=32.1
Q ss_pred CCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChH
Q psy9399 171 SHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGI 216 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~ 216 (453)
...+++|||++|.|.... ...+.++++--|....++++|..+...
T Consensus 94 ~~~kv~ii~~ad~mt~~A-aNaLLK~LEEPp~~~~fiL~~~~~~~l 138 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDA-ISAFLKVLEDPPQHGVIILTSAKPQRL 138 (290)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHhhcCCCCeEEEEEeCChhhC
Confidence 568899999999887554 455666666666677777777775443
No 448
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=91.49 E-value=0.15 Score=49.50 Aligned_cols=48 Identities=25% Similarity=0.374 Sum_probs=36.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATER 119 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 119 (453)
++++.||||||||..+++|-+... ...++|+=|--++........++
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~---------------------------------~~s~vv~D~Kge~~~~t~~~r~~ 47 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW---------------------------------PGSVVVLDPKGENFELTSEHRRA 47 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC---------------------------------CCCEEEEccchhHHHHHHHHHHH
Confidence 478999999999998888765431 23788888888888777666555
Q ss_pred H
Q psy9399 120 Y 120 (453)
Q Consensus 120 ~ 120 (453)
.
T Consensus 48 ~ 48 (384)
T cd01126 48 L 48 (384)
T ss_pred c
Confidence 4
No 449
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=91.48 E-value=0.41 Score=44.80 Aligned_cols=26 Identities=38% Similarity=0.632 Sum_probs=19.4
Q ss_pred HhcCCcEEEEcCCCchHHHHHHHHHHH
Q psy9399 35 AISGRDLIVSSQTGSGKTAAFMLPALH 61 (453)
Q Consensus 35 ~~~~~~~lv~a~TGsGKT~~~l~~~~~ 61 (453)
+..+.++++.||||||||. ++-.++.
T Consensus 141 v~~~~~ili~G~tGsGKTT-ll~al~~ 166 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTT-FLKSLVD 166 (308)
T ss_pred hhCCCEEEEECCCCCCHHH-HHHHHHc
Confidence 4467789999999999997 3444443
No 450
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=91.36 E-value=0.56 Score=42.27 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=16.5
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAFMLPA 59 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~~~ 59 (453)
+++++.||+|.|||..+.+-+
T Consensus 53 DHvLl~GPPGlGKTTLA~IIA 73 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHIIA 73 (332)
T ss_pred CeEEeeCCCCCcHHHHHHHHH
Confidence 469999999999997554443
No 451
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=91.33 E-value=0.54 Score=43.94 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=14.8
Q ss_pred CcEEEEcCCCchHHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAFM 56 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l 56 (453)
.++++.||+|+|||..+.
T Consensus 31 ~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 459999999999997443
No 452
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=91.29 E-value=1.9 Score=46.49 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=15.1
Q ss_pred CcEEEEcCCCchHHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAFM 56 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l 56 (453)
.+.++.||+|+|||...-
T Consensus 195 ~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 469999999999997543
No 453
>PRK07004 replicative DNA helicase; Provisional
Probab=91.12 E-value=0.72 Score=45.72 Aligned_cols=25 Identities=32% Similarity=0.262 Sum_probs=17.7
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHH
Q psy9399 37 SGRDLIVSSQTGSGKTAAFMLPALH 61 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~~l~~~~~ 61 (453)
.|.-++|.|.+|+|||..++-.+..
T Consensus 212 ~g~liviaarpg~GKT~~al~ia~~ 236 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAFSMNIGEY 236 (460)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHH
Confidence 3445899999999999754444433
No 454
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=91.06 E-value=1.7 Score=41.75 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=18.8
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHhh
Q psy9399 37 SGRDLIVSSQTGSGKTAAFMLPALHKF 63 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~~l~~~~~~l 63 (453)
.|+.++|.||+|+|||.. +..+...+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL-~~~i~~~I 192 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVL-LQKIAQAI 192 (415)
T ss_pred CCCEEEEECCCCCChhHH-HHHHHHhh
Confidence 567799999999999974 33344443
No 455
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=91.00 E-value=6.6 Score=40.58 Aligned_cols=59 Identities=24% Similarity=0.276 Sum_probs=54.2
Q ss_pred CCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeC
Q psy9399 269 VGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATD 327 (453)
Q Consensus 269 ~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 327 (453)
.+.++|.++++.-+..-.+.|+..|+.+..+|++++..++..++.....|+.++|++|.
T Consensus 53 ~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tp 111 (591)
T TIGR01389 53 KGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAP 111 (591)
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECh
Confidence 46789999999999988889999999999999999999999999999999999999984
No 456
>PRK10867 signal recognition particle protein; Provisional
Probab=90.94 E-value=4.2 Score=39.87 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=16.5
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q psy9399 41 LIVSSQTGSGKTAAFMLPALH 61 (453)
Q Consensus 41 ~lv~a~TGsGKT~~~l~~~~~ 61 (453)
++++|++|+|||.+..-.+..
T Consensus 103 I~~vG~~GsGKTTtaakLA~~ 123 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKY 123 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 788999999999866555443
No 457
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=90.93 E-value=3.6 Score=34.68 Aligned_cols=52 Identities=15% Similarity=0.341 Sum_probs=39.2
Q ss_pred CCccEEEEechhhhcccCC--hHHHHHHHhhCCCCccEEEEEeecChHHHHHHH
Q psy9399 171 SHLQILVLDEADRMLDMGF--INDIEKIVDATPVTRQTMLFSATLDGIVGNMAE 222 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~ 222 (453)
..+++||+||+-...+.++ ...+..+++..|....+|+..-.+|+.+...+.
T Consensus 114 ~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD 167 (178)
T PRK07414 114 GRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIAD 167 (178)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCC
Confidence 5789999999998888775 456667777777777777777777776665543
No 458
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=90.89 E-value=0.31 Score=49.68 Aligned_cols=45 Identities=31% Similarity=0.437 Sum_probs=29.7
Q ss_pred HHHhCCCCCCcHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHhh
Q psy9399 15 ALVKVGYTKPTGVQEQAIPAAISG--RDLIVSSQTGSGKTAAFMLPALHKF 63 (453)
Q Consensus 15 ~l~~~~~~~~~~~Q~~~~~~~~~~--~~~lv~a~TGsGKT~~~l~~~~~~l 63 (453)
.|.++|+ .+.|.+.+..+... ..++++||||||||.+ +..++..+
T Consensus 294 ~l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt-l~a~l~~~ 340 (564)
T TIGR02538 294 DIDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVS-LYTALNIL 340 (564)
T ss_pred CHHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHHhh
Confidence 3556665 35566666665543 4489999999999975 44555554
No 459
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=90.82 E-value=0.27 Score=49.14 Aligned_cols=49 Identities=33% Similarity=0.526 Sum_probs=37.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATER 119 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 119 (453)
++++.||||||||..+++|.+-. . ...++|.=|--+|...+...+++
T Consensus 46 h~lvig~tgSGKt~~~viP~ll~--~-------------------------------~~s~iV~D~KgEl~~~t~~~r~~ 92 (469)
T PF02534_consen 46 HVLVIGPTGSGKTTSFVIPNLLN--Y-------------------------------PGSMIVTDPKGELYEKTAGYRKK 92 (469)
T ss_pred EEEEEeCCCCCccceeeHhHHHh--c-------------------------------cCCEEEEECCCcHHHHHHHHHHH
Confidence 69999999999999998886532 1 22678888888887777766666
Q ss_pred Hh
Q psy9399 120 YG 121 (453)
Q Consensus 120 ~~ 121 (453)
.+
T Consensus 93 ~G 94 (469)
T PF02534_consen 93 RG 94 (469)
T ss_pred CC
Confidence 54
No 460
>KOG0742|consensus
Probab=90.76 E-value=0.58 Score=44.27 Aligned_cols=16 Identities=31% Similarity=0.592 Sum_probs=14.4
Q ss_pred CcEEEEcCCCchHHHH
Q psy9399 39 RDLIVSSQTGSGKTAA 54 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~ 54 (453)
+|+++.||+|+|||+.
T Consensus 385 RNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMF 400 (630)
T ss_pred hheeeeCCCCCCchHH
Confidence 5799999999999984
No 461
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=90.71 E-value=0.33 Score=44.27 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=21.8
Q ss_pred HHHHHHhcCCcEEEEcCCCchHHHHHHH
Q psy9399 30 QAIPAAISGRDLIVSSQTGSGKTAAFML 57 (453)
Q Consensus 30 ~~~~~~~~~~~~lv~a~TGsGKT~~~l~ 57 (453)
.+...+..+.++++.||+|+|||..+..
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~~ 40 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAMH 40 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHHH
Confidence 4455566778999999999999986543
No 462
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=90.70 E-value=2.7 Score=39.39 Aligned_cols=40 Identities=13% Similarity=0.288 Sum_probs=26.0
Q ss_pred CCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEE
Q psy9399 170 FSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFS 210 (453)
Q Consensus 170 ~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 210 (453)
....+++||||+|.+.... ...+...++--|....+|+++
T Consensus 91 ~~~~kv~iI~~ad~m~~~a-~naLLK~LEepp~~t~~il~~ 130 (313)
T PRK05564 91 EGDKKVIIIYNSEKMTEQA-QNAFLKTIEEPPKGVFIILLC 130 (313)
T ss_pred cCCceEEEEechhhcCHHH-HHHHHHHhcCCCCCeEEEEEe
Confidence 3578899999999886544 344445555545555555555
No 463
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=90.67 E-value=0.67 Score=47.55 Aligned_cols=44 Identities=27% Similarity=0.322 Sum_probs=28.0
Q ss_pred CCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeec
Q psy9399 170 FSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATL 213 (453)
Q Consensus 170 ~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 213 (453)
+++-.++|+||+..-+|..-...+...+..+.+.+.++..+--+
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRl 524 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRL 524 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccH
Confidence 45568999999998888776666666555444444344444443
No 464
>PRK08006 replicative DNA helicase; Provisional
Probab=90.67 E-value=4.2 Score=40.47 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=17.8
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHH
Q psy9399 37 SGRDLIVSSQTGSGKTAAFMLPALH 61 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~~l~~~~~ 61 (453)
.|.-++|.|.+|.|||..++-.+..
T Consensus 223 ~G~LiiIaarPgmGKTafalnia~~ 247 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAMNLCEN 247 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3445899999999999754444443
No 465
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.67 E-value=0.52 Score=44.04 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=29.1
Q ss_pred CCcHHHHH-HHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhh
Q psy9399 23 KPTGVQEQ-AIPAAISGRDLIVSSQTGSGKTAAFMLPALHKF 63 (453)
Q Consensus 23 ~~~~~Q~~-~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l 63 (453)
.+++.|.. ++-++..+++++++|+||||||. .+.+++..+
T Consensus 127 t~~~~~~ayL~~~ie~~~siii~G~t~sGKTt-~lnall~~I 167 (312)
T COG0630 127 TISPEQAAYLWLAIEARKSIIICGGTASGKTT-LLNALLDFI 167 (312)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEECCCCCCHHH-HHHHHHHhC
Confidence 35555554 55566678899999999999997 566666553
No 466
>KOG1513|consensus
Probab=90.59 E-value=0.26 Score=50.28 Aligned_cols=61 Identities=18% Similarity=0.327 Sum_probs=49.1
Q ss_pred HHHHhcCCccEEEEeCCcccCCCCCCCcEE--------EEcCCCCChhHHHHHhhhccCCCCC-ccEEEE
Q psy9399 312 LENLRRGRIKILVATDVAARGIDVPAITHV--------FNYDLPKFPEDYVHRIGRTGRAGRN-GFAVSL 372 (453)
Q Consensus 312 ~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~V--------i~~~~~~~~~~~~Q~~GR~~R~g~~-g~~~~~ 372 (453)
-++|.+|+-.|-|-+.+++.||.+..-+.| |-+.+|||.+.-+|.+||++|.++- +.-|+|
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvF 919 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVF 919 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEE
Confidence 467999999999999999999999754443 4478999999999999999998655 433443
No 467
>KOG1807|consensus
Probab=90.58 E-value=0.52 Score=48.05 Aligned_cols=74 Identities=16% Similarity=0.099 Sum_probs=55.6
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCce
Q psy9399 20 GYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPR 99 (453)
Q Consensus 20 ~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (453)
|..-+..-|..|....+..+-.++.+|+|+|||++-+..+-..+..... ......
T Consensus 375 g~~ildsSq~~A~qs~ltyelsliqgppGTgkt~vtlkav~tLL~n~s~-------------------------~~~~ep 429 (1025)
T KOG1807|consen 375 GLVILDSSQQFAKQSKLTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSG-------------------------YTEPEP 429 (1025)
T ss_pred CceeecHHHHHHHHHHhhhhhheeecCCCCCceeehHHHHHHHHhcccc-------------------------cccccc
Confidence 3444566799999998888889999999999999887777666655321 122347
Q ss_pred EEEEcCcHHHHHHHHHHHH
Q psy9399 100 MLVLTPTRELALQVTAATE 118 (453)
Q Consensus 100 ~lil~P~~~L~~q~~~~~~ 118 (453)
++++|-|..-+.|....+-
T Consensus 430 IlvvC~Tnhavdq~ligiy 448 (1025)
T KOG1807|consen 430 ILVVCLTNHAVDQYLIGIY 448 (1025)
T ss_pred eeeeehhhHHHHHHHHHHH
Confidence 8999999988888765554
No 468
>PRK05748 replicative DNA helicase; Provisional
Probab=90.58 E-value=1.4 Score=43.65 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=18.0
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHH
Q psy9399 37 SGRDLIVSSQTGSGKTAAFMLPALH 61 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~~l~~~~~ 61 (453)
.|.-++|.|+||.|||...+-.+..
T Consensus 202 ~G~livIaarpg~GKT~~al~ia~~ 226 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAFALNIAQN 226 (448)
T ss_pred CCceEEEEeCCCCCchHHHHHHHHH
Confidence 3345899999999999755444443
No 469
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=90.44 E-value=1.1 Score=45.18 Aligned_cols=70 Identities=27% Similarity=0.431 Sum_probs=54.9
Q ss_pred EEEEeccchhHHHHHHHHhh----C-CCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeC-----CcccC-CCCCCCcE
Q psy9399 272 AVVFTATKRDADIIADRLNI----S-GFLAAPLHGDLHQNARNRTLENLRRGRIKILVATD-----VAARG-IDVPAITH 340 (453)
Q Consensus 272 ~lvf~~~~~~~~~l~~~L~~----~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~G-vdi~~~~~ 340 (453)
+||+++|++.|..+++.+.. . ++.++.+.|+++...+... ++.| .+|+|||+ .+.++ +|+..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~---l~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEA---LKRG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHH---HhcC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 99999999999999998875 2 5678999999887766544 4446 89999996 35555 78888888
Q ss_pred EEEcC
Q psy9399 341 VFNYD 345 (453)
Q Consensus 341 Vi~~~ 345 (453)
+|...
T Consensus 178 lVlDE 182 (513)
T COG0513 178 LVLDE 182 (513)
T ss_pred EEecc
Confidence 87644
No 470
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=90.40 E-value=0.6 Score=42.50 Aligned_cols=54 Identities=15% Similarity=0.244 Sum_probs=36.5
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHH
Q psy9399 37 SGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~ 116 (453)
.++.++|.|++|+|||...+-.+...+.. +.+++++.- .+...++.+.
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~-------------------------------ge~vlyvs~-~e~~~~l~~~ 69 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGARE-------------------------------GEPVLYVST-EESPEELLEN 69 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhc-------------------------------CCcEEEEEe-cCCHHHHHHH
Confidence 34569999999999998666666655443 446666554 4666666666
Q ss_pred HHHHhc
Q psy9399 117 TERYGL 122 (453)
Q Consensus 117 ~~~~~~ 122 (453)
+..++.
T Consensus 70 ~~~~g~ 75 (260)
T COG0467 70 ARSFGW 75 (260)
T ss_pred HHHcCC
Confidence 666554
No 471
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=90.39 E-value=0.45 Score=41.31 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=16.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q psy9399 41 LIVSSQTGSGKTAAFMLPALHKF 63 (453)
Q Consensus 41 ~lv~a~TGsGKT~~~l~~~~~~l 63 (453)
++++||||||||.. +..++..+
T Consensus 4 ilI~GptGSGKTTl-l~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTT-LAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHH-HHHHHHHh
Confidence 78999999999974 34444443
No 472
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=90.28 E-value=0.67 Score=41.10 Aligned_cols=52 Identities=15% Similarity=0.240 Sum_probs=35.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHH
Q psy9399 38 GRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAAT 117 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 117 (453)
+.-+++.|++|+|||...+..+...+.+ +.+++|+... +-..++.+.+
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~-------------------------------g~~~~y~s~e-~~~~~l~~~~ 63 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKN-------------------------------GEKAMYISLE-EREERILGYA 63 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC-------------------------------CCeEEEEECC-CCHHHHHHHH
Confidence 3458999999999998655555554433 4477777665 3457777777
Q ss_pred HHHh
Q psy9399 118 ERYG 121 (453)
Q Consensus 118 ~~~~ 121 (453)
..++
T Consensus 64 ~~~~ 67 (224)
T TIGR03880 64 KSKG 67 (224)
T ss_pred HHcC
Confidence 6654
No 473
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=90.01 E-value=11 Score=36.95 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=16.9
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q psy9399 41 LIVSSQTGSGKTAAFMLPALH 61 (453)
Q Consensus 41 ~lv~a~TGsGKT~~~l~~~~~ 61 (453)
++++|++|+|||.+..-.+..
T Consensus 102 i~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 889999999999876555544
No 474
>CHL00095 clpC Clp protease ATP binding subunit
Probab=89.97 E-value=2.6 Score=45.30 Aligned_cols=20 Identities=30% Similarity=0.250 Sum_probs=16.1
Q ss_pred CcEEEEcCCCchHHHHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAFMLP 58 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~~ 58 (453)
+++++.||+|+|||.++-..
T Consensus 201 ~n~lL~G~pGvGKTal~~~l 220 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEGL 220 (821)
T ss_pred CCeEEECCCCCCHHHHHHHH
Confidence 46999999999999755333
No 475
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=89.89 E-value=1.2 Score=39.53 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=18.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHh
Q psy9399 39 RDLIVSSQTGSGKTAAFMLPALHK 62 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~~~~~~ 62 (453)
+-+.|.||+|+|||...+..+...
T Consensus 20 ~v~~I~G~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 20 RITEIFGEFGSGKTQLCLQLAVEA 43 (226)
T ss_pred cEEEEeCCCCCChhHHHHHHHHHh
Confidence 458999999999998666555443
No 476
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=89.59 E-value=0.28 Score=50.00 Aligned_cols=50 Identities=24% Similarity=0.331 Sum_probs=38.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATE 118 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 118 (453)
.++++.||||||||..+++|-+... +..+||+=|--++...+....+
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~---------------------------------~~S~VV~DpKGEl~~~Ta~~R~ 205 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW---------------------------------EDSVVVHDIKLENYELTSGWRE 205 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC---------------------------------CCCEEEEeCcHHHHHHHHHHHH
Confidence 4699999999999999999987653 2267777788788777776666
Q ss_pred HHh
Q psy9399 119 RYG 121 (453)
Q Consensus 119 ~~~ 121 (453)
+.+
T Consensus 206 ~~G 208 (606)
T PRK13897 206 KQG 208 (606)
T ss_pred HCC
Confidence 654
No 477
>PHA00012 I assembly protein
Probab=89.46 E-value=8.3 Score=35.92 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=20.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhhh
Q psy9399 41 LIVSSQTGSGKTAAFMLPALHKFAS 65 (453)
Q Consensus 41 ~lv~a~TGsGKT~~~l~~~~~~l~~ 65 (453)
.++.|..|+|||+.++.-+...+.+
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~ 28 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVK 28 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHc
Confidence 5789999999999887777766554
No 478
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=89.38 E-value=0.64 Score=44.21 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=18.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhh
Q psy9399 38 GRDLIVSSQTGSGKTAAFMLPALHKF 63 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~l~~~~~~l 63 (453)
+..++++||||||||.. +..++..+
T Consensus 122 ~g~ili~G~tGSGKTT~-l~al~~~i 146 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTT-LASMIDYI 146 (343)
T ss_pred CcEEEEECCCCCCHHHH-HHHHHHhh
Confidence 45699999999999974 44444443
No 479
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.38 E-value=4.2 Score=39.10 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=15.3
Q ss_pred cEEEEcCCCchHHHHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAFMLP 58 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~l~~ 58 (453)
.++++||.|+|||..+...
T Consensus 41 ~~L~~G~~G~GKt~~a~~l 59 (367)
T PRK14970 41 ALLFCGPRGVGKTTCARIL 59 (367)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4889999999999755443
No 480
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=89.33 E-value=0.36 Score=32.75 Aligned_cols=16 Identities=25% Similarity=0.482 Sum_probs=14.0
Q ss_pred CcEEEEcCCCchHHHH
Q psy9399 39 RDLIVSSQTGSGKTAA 54 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~ 54 (453)
+..++.+++|+|||..
T Consensus 24 ~~tli~G~nGsGKSTl 39 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTL 39 (62)
T ss_pred cEEEEECCCCCCHHHH
Confidence 4699999999999974
No 481
>KOG0744|consensus
Probab=89.29 E-value=0.66 Score=42.55 Aligned_cols=14 Identities=29% Similarity=0.596 Sum_probs=12.6
Q ss_pred cEEEEcCCCchHHH
Q psy9399 40 DLIVSSQTGSGKTA 53 (453)
Q Consensus 40 ~~lv~a~TGsGKT~ 53 (453)
-+++.||+|+|||.
T Consensus 179 liLlhGPPGTGKTS 192 (423)
T KOG0744|consen 179 LILLHGPPGTGKTS 192 (423)
T ss_pred EEEEeCCCCCChhH
Confidence 38999999999996
No 482
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=89.29 E-value=0.69 Score=47.03 Aligned_cols=41 Identities=22% Similarity=0.321 Sum_probs=25.5
Q ss_pred CCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEE
Q psy9399 170 FSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFS 210 (453)
Q Consensus 170 ~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 210 (453)
+++.+++|+||+-.-+|..-...+...+....+++-+|.+|
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiIt 526 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVIT 526 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 46677899999887777665555555555444444344443
No 483
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=89.28 E-value=4.2 Score=43.81 Aligned_cols=17 Identities=35% Similarity=0.603 Sum_probs=14.7
Q ss_pred CcEEEEcCCCchHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~ 55 (453)
.+.++.||+|+|||...
T Consensus 209 ~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVV 225 (852)
T ss_pred CceeEECCCCCCHHHHH
Confidence 46999999999999754
No 484
>PRK08760 replicative DNA helicase; Provisional
Probab=89.25 E-value=3.2 Score=41.36 Aligned_cols=24 Identities=21% Similarity=0.127 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHH
Q psy9399 38 GRDLIVSSQTGSGKTAAFMLPALH 61 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~l~~~~~ 61 (453)
|.-++|.|.+|.|||...+-.+..
T Consensus 229 G~LivIaarPg~GKTafal~iA~~ 252 (476)
T PRK08760 229 TDLIILAARPAMGKTTFALNIAEY 252 (476)
T ss_pred CceEEEEeCCCCChhHHHHHHHHH
Confidence 344899999999999755544443
No 485
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=89.23 E-value=0.59 Score=40.89 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=18.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHh
Q psy9399 39 RDLIVSSQTGSGKTAAFMLPALHK 62 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~~~~~~ 62 (453)
.-+.+.||+|+|||...+..+...
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~ 36 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNA 36 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 448999999999998766555544
No 486
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=89.21 E-value=6.6 Score=35.85 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=17.6
Q ss_pred HHHHHHhcC---CcEEEEcCCCchHHH
Q psy9399 30 QAIPAAISG---RDLIVSSQTGSGKTA 53 (453)
Q Consensus 30 ~~~~~~~~~---~~~lv~a~TGsGKT~ 53 (453)
..++.+... +++++.+|+|+|||.
T Consensus 100 ~~l~~l~~~~~~~~~~i~g~~g~GKtt 126 (270)
T TIGR02858 100 KLLPYLVRNNRVLNTLIISPPQCGKTT 126 (270)
T ss_pred HHHHHHHhCCCeeEEEEEcCCCCCHHH
Confidence 334455433 478999999999996
No 487
>KOG0330|consensus
Probab=89.16 E-value=2.6 Score=39.72 Aligned_cols=84 Identities=24% Similarity=0.293 Sum_probs=63.4
Q ss_pred HHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhC----CCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCC-c-
Q psy9399 256 KNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNIS----GFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDV-A- 329 (453)
Q Consensus 256 ~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~- 329 (453)
...++..++.+...-.++|.+++++-|..+++.++.. |..++.+-|+++...... ..+ .+..|||||.- +
T Consensus 116 aLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~--~L~--kkPhilVaTPGrL~ 191 (476)
T KOG0330|consen 116 ALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQAN--QLS--KKPHILVATPGRLW 191 (476)
T ss_pred HHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHH--Hhh--cCCCEEEeCcHHHH
Confidence 3467888888877788999999999999999998764 678899999988654333 333 35789999953 2
Q ss_pred -----ccCCCCCCCcEEEE
Q psy9399 330 -----ARGIDVPAITHVFN 343 (453)
Q Consensus 330 -----~~Gvdi~~~~~Vi~ 343 (453)
..|+++..+.+.|.
T Consensus 192 dhl~~Tkgf~le~lk~LVl 210 (476)
T KOG0330|consen 192 DHLENTKGFSLEQLKFLVL 210 (476)
T ss_pred HHHHhccCccHHHhHHHhh
Confidence 36777777776554
No 488
>PRK10865 protein disaggregation chaperone; Provisional
Probab=88.94 E-value=2.9 Score=45.01 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=14.7
Q ss_pred CcEEEEcCCCchHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~ 55 (453)
.+.++.||+|+|||...
T Consensus 200 ~n~lL~G~pGvGKT~l~ 216 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIV 216 (857)
T ss_pred CceEEECCCCCCHHHHH
Confidence 46999999999999754
No 489
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=88.91 E-value=0.88 Score=41.24 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=22.9
Q ss_pred HHHHHHhcCC-----cEEEEcCCCchHHHHHHHHHHHh
Q psy9399 30 QAIPAAISGR-----DLIVSSQTGSGKTAAFMLPALHK 62 (453)
Q Consensus 30 ~~~~~~~~~~-----~~lv~a~TGsGKT~~~l~~~~~~ 62 (453)
..++.++.|. -+=++|+.|+|||...+..++..
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~ 62 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNV 62 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHh
Confidence 3566777652 26789999999997665555443
No 490
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=88.89 E-value=0.73 Score=46.12 Aligned_cols=60 Identities=18% Similarity=0.237 Sum_probs=42.0
Q ss_pred HHHHHHhcC-----CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEc
Q psy9399 30 QAIPAAISG-----RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLT 104 (453)
Q Consensus 30 ~~~~~~~~~-----~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 104 (453)
..++.++.| .-++|.+|+|+|||...+..+...+.+ +.+++|+.
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~-------------------------------ge~~~y~s 298 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACAN-------------------------------KERAILFA 298 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHC-------------------------------CCeEEEEE
Confidence 345555544 459999999999998766666555443 44788876
Q ss_pred CcHHHHHHHHHHHHHHh
Q psy9399 105 PTRELALQVTAATERYG 121 (453)
Q Consensus 105 P~~~L~~q~~~~~~~~~ 121 (453)
.-+-..|+......++
T Consensus 299 -~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 299 -YEESRAQLLRNAYSWG 314 (484)
T ss_pred -eeCCHHHHHHHHHHcC
Confidence 4466688888777765
No 491
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=88.89 E-value=1.3 Score=37.72 Aligned_cols=42 Identities=21% Similarity=0.247 Sum_probs=27.2
Q ss_pred CCccEEEEechhhhcccCChHHHHHHHhhC-CCCccEEEEEee
Q psy9399 171 SHLQILVLDEADRMLDMGFINDIEKIVDAT-PVTRQTMLFSAT 212 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~~SAT 212 (453)
.+.+++++||...-++......+...+... ....++++.|--
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 567899999999888766555555555443 223556666554
No 492
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=88.80 E-value=1.1 Score=46.83 Aligned_cols=71 Identities=21% Similarity=0.148 Sum_probs=52.1
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEE
Q psy9399 23 KPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLV 102 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 102 (453)
.+++-|.+++... ...++|.|..|||||.+...-+...+..... ....++.
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v---------------------------~p~~Il~ 52 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGV---------------------------DPEQILA 52 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCc---------------------------ChHHeee
Confidence 4788999998776 5679999999999999766666665554221 1225777
Q ss_pred EcCcHHHHHHHHHHHHHHhc
Q psy9399 103 LTPTRELALQVTAATERYGL 122 (453)
Q Consensus 103 l~P~~~L~~q~~~~~~~~~~ 122 (453)
++=|+-.+.++.+++.....
T Consensus 53 vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 53 ITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred eechHHHHHHHHHHHHHHhC
Confidence 88888888888777777654
No 493
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=88.79 E-value=0.64 Score=41.35 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=18.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhhh
Q psy9399 39 RDLIVSSQTGSGKTAAFMLPALHKFA 64 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~~~~~~l~ 64 (453)
+++.|.|.||||||... ..+++.+.
T Consensus 24 ~H~~I~G~TGsGKS~~~-~~ll~~l~ 48 (229)
T PF01935_consen 24 RHIAIFGTTGSGKSNTV-KVLLEELL 48 (229)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHH
Confidence 68999999999999854 44444444
No 494
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=88.69 E-value=2.5 Score=37.66 Aligned_cols=27 Identities=33% Similarity=0.383 Sum_probs=18.8
Q ss_pred HhcCC-cEEEEcCCCchHHHHHHHHHHHh
Q psy9399 35 AISGR-DLIVSSQTGSGKTAAFMLPALHK 62 (453)
Q Consensus 35 ~~~~~-~~lv~a~TGsGKT~~~l~~~~~~ 62 (453)
+..++ -+.++|+-|||||...= ++...
T Consensus 47 i~d~qg~~~vtGevGsGKTv~~R-al~~s 74 (269)
T COG3267 47 IADGQGILAVTGEVGSGKTVLRR-ALLAS 74 (269)
T ss_pred HhcCCceEEEEecCCCchhHHHH-HHHHh
Confidence 33445 48999999999997544 44443
No 495
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=88.63 E-value=1.1 Score=46.36 Aligned_cols=53 Identities=25% Similarity=0.317 Sum_probs=34.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHH--HHHHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRE--LALQVTAA 116 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~--L~~q~~~~ 116 (453)
.+++|.|+||+|||..+...+.+.+.. +..++++=|--. |...+...
T Consensus 177 ~H~lv~G~TGsGKT~l~~~l~~q~i~~-------------------------------g~~viv~DpKgD~~l~~~~~~~ 225 (634)
T TIGR03743 177 GHTLVLGTTGVGKTRLAELLITQDIRR-------------------------------GDVVIVIDPKGDADLKRRMRAE 225 (634)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHc-------------------------------CCeEEEEeCCCchHHHHHHHHH
Confidence 569999999999997654444444332 336666666543 66666666
Q ss_pred HHHHhc
Q psy9399 117 TERYGL 122 (453)
Q Consensus 117 ~~~~~~ 122 (453)
+++.+.
T Consensus 226 ~~~~G~ 231 (634)
T TIGR03743 226 AKRAGR 231 (634)
T ss_pred HHHhCC
Confidence 666553
No 496
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=88.60 E-value=2.2 Score=40.66 Aligned_cols=94 Identities=17% Similarity=0.367 Sum_probs=59.6
Q ss_pred HHHHhcC-----CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCc
Q psy9399 32 IPAAISG-----RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPT 106 (453)
Q Consensus 32 ~~~~~~~-----~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~ 106 (453)
++.++.| .-++|.+.+|.||+.. |+-+...+... + ++||++-.
T Consensus 82 ldRVLGGG~V~Gs~iLIgGdPGIGKSTL-LLQva~~lA~~------------------------------~-~vLYVsGE 129 (456)
T COG1066 82 LDRVLGGGLVPGSVILIGGDPGIGKSTL-LLQVAARLAKR------------------------------G-KVLYVSGE 129 (456)
T ss_pred HHhhhcCCcccccEEEEccCCCCCHHHH-HHHHHHHHHhc------------------------------C-cEEEEeCC
Confidence 4455544 3489999999999974 44555554431 2 89998887
Q ss_pred HHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeC---hHHHHHHHhcCCCCCCCccEEEEechhh
Q psy9399 107 RELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLAT---PGRLIDHMNSGKINFSHLQILVLDEADR 183 (453)
Q Consensus 107 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T---~~~l~~~l~~~~~~~~~~~~iIiDE~h~ 183 (453)
|...|+.-+..+++.... ++.+.. -+.+...+.. .+.+++|+|-++.
T Consensus 130 -ES~~QiklRA~RL~~~~~------------------------~l~l~aEt~~e~I~~~l~~-----~~p~lvVIDSIQT 179 (456)
T COG1066 130 -ESLQQIKLRADRLGLPTN------------------------NLYLLAETNLEDIIAELEQ-----EKPDLVVIDSIQT 179 (456)
T ss_pred -cCHHHHHHHHHHhCCCcc------------------------ceEEehhcCHHHHHHHHHh-----cCCCEEEEeccce
Confidence 556888877887763222 222222 2333343332 5678999999997
Q ss_pred hccc
Q psy9399 184 MLDM 187 (453)
Q Consensus 184 ~~~~ 187 (453)
+...
T Consensus 180 ~~s~ 183 (456)
T COG1066 180 LYSE 183 (456)
T ss_pred eecc
Confidence 7643
No 497
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=88.53 E-value=4.4 Score=40.81 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=17.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAFMLPAL 60 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~~~~ 60 (453)
+.+++.||+|+|||+.+-..+.
T Consensus 277 ~giLl~GpPGtGKT~lAkava~ 298 (494)
T COG0464 277 KGVLLYGPPGTGKTLLAKAVAL 298 (494)
T ss_pred CeeEEECCCCCCHHHHHHHHHh
Confidence 4599999999999986544443
No 498
>KOG0058|consensus
Probab=88.51 E-value=0.91 Score=46.30 Aligned_cols=41 Identities=29% Similarity=0.333 Sum_probs=29.7
Q ss_pred CCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEe
Q psy9399 170 FSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSA 211 (453)
Q Consensus 170 ~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 211 (453)
+++..++|+|||-.-+|..-...+...+..+...+ .+++=|
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~r-TVlvIA 660 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRLMQGR-TVLVIA 660 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCC-eEEEEe
Confidence 56788999999999888887777777776665553 444433
No 499
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=88.31 E-value=1.4 Score=37.81 Aligned_cols=63 Identities=17% Similarity=0.168 Sum_probs=33.6
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHH
Q psy9399 37 SGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~ 116 (453)
.|.-+++.||+|+|||...+-.+...+....-- . .....+.+++++...-. ..++.+.
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~-------------------g--~~~~~~~~Vl~i~~E~~-~~~~~~r 88 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFL-------------------G--ELPPRPGRVLYISLEDS-ESQIARR 88 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT------------------------------EEEEESSS--HHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccC-------------------C--cccccCceEEEEeccCC-HHHHHHH
Confidence 345599999999999985555554443211000 0 00113558888877655 4566666
Q ss_pred HHHHh
Q psy9399 117 TERYG 121 (453)
Q Consensus 117 ~~~~~ 121 (453)
+....
T Consensus 89 l~~~~ 93 (193)
T PF13481_consen 89 LRALL 93 (193)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66654
No 500
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=88.29 E-value=0.86 Score=45.62 Aligned_cols=54 Identities=20% Similarity=0.258 Sum_probs=38.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHH
Q psy9399 38 GRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAAT 117 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 117 (453)
+..++|.|++|+|||..++..+.+.+.+ .+.+++|++-. +-..++.+..
T Consensus 21 g~~~Li~G~pGsGKT~la~qfl~~g~~~------------------------------~ge~~lyvs~e-E~~~~l~~~~ 69 (484)
T TIGR02655 21 GRSTLVSGTSGTGKTLFSIQFLYNGIIH------------------------------FDEPGVFVTFE-ESPQDIIKNA 69 (484)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHh------------------------------CCCCEEEEEEe-cCHHHHHHHH
Confidence 3559999999999998777666655443 13367777754 6667777777
Q ss_pred HHHhc
Q psy9399 118 ERYGL 122 (453)
Q Consensus 118 ~~~~~ 122 (453)
..++.
T Consensus 70 ~~~G~ 74 (484)
T TIGR02655 70 RSFGW 74 (484)
T ss_pred HHcCC
Confidence 77664
Done!