Query psy9399
Match_columns 453
No_of_seqs 231 out of 2549
Neff 10.2
Searched_HMMs 29240
Date Fri Aug 16 18:09:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9399.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9399hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 2.6E-59 9.1E-64 458.5 45.8 364 1-390 56-422 (434)
2 2j0s_A ATP-dependent RNA helic 100.0 2.6E-58 9E-63 450.0 40.9 364 2-394 38-401 (410)
3 2i4i_A ATP-dependent RNA helic 100.0 3.4E-57 1.2E-61 443.2 42.4 378 1-390 15-397 (417)
4 3eiq_A Eukaryotic initiation f 100.0 8.5E-57 2.9E-61 440.0 38.2 364 2-394 41-405 (414)
5 1s2m_A Putative ATP-dependent 100.0 8.1E-56 2.8E-60 431.0 43.5 362 1-393 21-382 (400)
6 1xti_A Probable ATP-dependent 100.0 1.6E-55 5.6E-60 427.6 42.8 363 1-392 8-374 (391)
7 3fht_A ATP-dependent RNA helic 100.0 9.6E-56 3.3E-60 432.2 41.3 363 1-394 25-398 (412)
8 3pey_A ATP-dependent RNA helic 100.0 3.7E-55 1.3E-59 425.6 41.5 356 1-389 5-370 (395)
9 1hv8_A Putative ATP-dependent 100.0 4.6E-54 1.6E-58 413.7 42.9 357 1-394 6-363 (367)
10 1fuu_A Yeast initiation factor 100.0 1.6E-56 5.6E-61 435.1 23.8 363 1-393 21-383 (394)
11 3fmp_B ATP-dependent RNA helic 100.0 4.6E-56 1.6E-60 442.3 21.5 362 1-393 92-464 (479)
12 3sqw_A ATP-dependent RNA helic 100.0 1.2E-53 4.3E-58 433.6 37.7 362 8-393 28-415 (579)
13 3i5x_A ATP-dependent RNA helic 100.0 3.9E-53 1.3E-57 429.8 37.8 362 8-393 79-466 (563)
14 2z0m_A 337AA long hypothetical 100.0 1.1E-51 3.9E-56 392.4 39.2 335 8-389 1-335 (337)
15 3fho_A ATP-dependent RNA helic 100.0 9E-53 3.1E-57 419.8 22.8 360 3-395 121-490 (508)
16 2v1x_A ATP-dependent DNA helic 100.0 4.5E-50 1.5E-54 403.9 36.5 338 3-382 23-380 (591)
17 1oyw_A RECQ helicase, ATP-depe 100.0 1.6E-49 5.5E-54 396.2 36.3 336 1-382 2-349 (523)
18 3oiy_A Reverse gyrase helicase 100.0 1.8E-48 6E-53 380.7 27.1 339 11-402 9-391 (414)
19 2zj8_A DNA helicase, putative 100.0 7E-47 2.4E-51 393.3 29.7 334 1-377 1-388 (720)
20 2va8_A SSO2462, SKI2-type heli 100.0 4.2E-46 1.4E-50 387.6 34.4 334 1-378 8-410 (715)
21 2p6r_A Afuhel308 helicase; pro 100.0 1E-46 3.6E-51 390.9 25.7 333 1-377 1-389 (702)
22 3l9o_A ATP-dependent RNA helic 100.0 2.3E-45 8E-50 391.9 28.1 330 2-376 163-597 (1108)
23 4a2p_A RIG-I, retinoic acid in 100.0 1.8E-44 6.1E-49 366.1 31.4 330 20-379 4-511 (556)
24 2ykg_A Probable ATP-dependent 100.0 2.1E-44 7.2E-49 374.8 27.5 340 13-381 3-521 (696)
25 2xgj_A ATP-dependent RNA helic 100.0 4.7E-43 1.6E-47 371.1 36.4 314 17-376 81-499 (1010)
26 3tbk_A RIG-I helicase domain; 100.0 4.7E-44 1.6E-48 363.0 27.2 332 23-384 4-515 (555)
27 4a2q_A RIG-I, retinoic acid in 100.0 1.6E-43 5.6E-48 371.4 31.9 332 18-379 243-752 (797)
28 4ddu_A Reverse gyrase; topoiso 100.0 1.6E-43 5.4E-48 377.7 29.4 328 18-398 74-514 (1104)
29 1wp9_A ATP-dependent RNA helic 100.0 2.7E-42 9.2E-47 344.3 34.9 322 23-378 9-477 (494)
30 4a2w_A RIG-I, retinoic acid in 100.0 1.6E-42 5.4E-47 367.6 29.9 331 19-378 244-751 (936)
31 1gku_B Reverse gyrase, TOP-RG; 100.0 3.2E-43 1.1E-47 375.7 23.8 324 14-390 48-468 (1054)
32 4a4z_A Antiviral helicase SKI2 100.0 1.2E-41 4.2E-46 360.4 31.9 310 19-374 36-490 (997)
33 1tf5_A Preprotein translocase 100.0 3.1E-41 1.1E-45 339.9 31.2 322 18-378 79-547 (844)
34 1gm5_A RECG; helicase, replica 100.0 3.6E-42 1.2E-46 353.5 24.5 328 10-385 356-706 (780)
35 4f92_B U5 small nuclear ribonu 100.0 3.7E-41 1.3E-45 371.3 34.1 350 9-395 912-1324(1724)
36 4gl2_A Interferon-induced heli 100.0 1.7E-42 5.7E-47 360.7 21.9 315 23-364 7-509 (699)
37 2eyq_A TRCF, transcription-rep 100.0 2E-40 6.8E-45 356.1 37.3 323 6-377 586-923 (1151)
38 4f92_B U5 small nuclear ribonu 100.0 7.2E-41 2.5E-45 369.1 27.7 347 20-395 76-489 (1724)
39 2oca_A DAR protein, ATP-depend 100.0 8.2E-42 2.8E-46 342.4 17.6 310 23-374 113-453 (510)
40 2fsf_A Preprotein translocase 100.0 9.4E-40 3.2E-44 328.1 26.8 321 19-378 71-585 (853)
41 2fwr_A DNA repair protein RAD2 100.0 1.7E-39 5.8E-44 322.5 24.0 292 23-375 93-453 (472)
42 1nkt_A Preprotein translocase 100.0 4.1E-38 1.4E-42 316.5 31.8 322 18-378 107-619 (922)
43 2whx_A Serine protease/ntpase/ 100.0 1.6E-40 5.3E-45 335.5 9.4 314 6-388 155-493 (618)
44 2jlq_A Serine protease subunit 100.0 3E-39 1E-43 317.0 16.1 288 20-376 1-311 (451)
45 2xau_A PRE-mRNA-splicing facto 100.0 2.3E-38 7.9E-43 327.5 22.1 333 2-378 73-445 (773)
46 3o8b_A HCV NS3 protease/helica 100.0 4.1E-39 1.4E-43 322.0 12.3 288 24-390 218-532 (666)
47 1yks_A Genome polyprotein [con 100.0 8.8E-40 3E-44 319.3 4.7 287 34-388 4-314 (440)
48 2wv9_A Flavivirin protease NS2 100.0 3.5E-38 1.2E-42 320.2 12.7 297 23-387 215-547 (673)
49 3h1t_A Type I site-specific re 100.0 7E-37 2.4E-41 311.6 21.3 305 23-365 178-545 (590)
50 2v6i_A RNA helicase; membrane, 100.0 2.4E-36 8.3E-41 294.4 21.5 269 37-373 1-288 (431)
51 2z83_A Helicase/nucleoside tri 100.0 1.4E-37 4.9E-42 305.5 12.0 273 32-376 15-313 (459)
52 3fe2_A Probable ATP-dependent 100.0 3E-35 1E-39 265.2 25.6 211 1-235 29-239 (242)
53 1vec_A ATP-dependent RNA helic 100.0 5.3E-35 1.8E-39 257.3 26.4 203 1-231 3-205 (206)
54 3dmq_A RNA polymerase-associat 100.0 1E-35 3.5E-40 315.8 23.0 334 23-391 153-628 (968)
55 1q0u_A Bstdead; DEAD protein, 100.0 4.6E-35 1.6E-39 260.0 22.5 207 1-235 4-213 (219)
56 3ber_A Probable ATP-dependent 100.0 1.9E-34 6.5E-39 260.6 26.5 204 1-233 43-247 (249)
57 2oxc_A Probable ATP-dependent 100.0 1.6E-34 5.4E-39 258.4 24.7 204 1-233 24-228 (230)
58 3rc3_A ATP-dependent RNA helic 100.0 1.2E-34 4E-39 293.5 25.8 275 33-375 150-444 (677)
59 2gxq_A Heat resistant RNA depe 100.0 4.3E-34 1.5E-38 251.7 24.8 205 1-233 1-205 (207)
60 3bor_A Human initiation factor 100.0 1.8E-34 6.3E-39 259.2 22.5 204 1-233 30-234 (237)
61 1wrb_A DJVLGB; RNA helicase, D 100.0 2E-34 6.8E-39 261.8 21.6 223 1-243 23-249 (253)
62 3fmo_B ATP-dependent RNA helic 100.0 3.5E-34 1.2E-38 265.5 22.3 203 1-234 92-298 (300)
63 3iuy_A Probable ATP-dependent 100.0 4E-34 1.4E-38 255.7 21.8 207 2-232 20-227 (228)
64 1t6n_A Probable ATP-dependent 100.0 8.4E-34 2.9E-38 252.2 23.8 204 1-232 14-219 (220)
65 1qde_A EIF4A, translation init 100.0 7.9E-34 2.7E-38 253.1 23.3 204 1-234 14-217 (224)
66 1z63_A Helicase of the SNF2/RA 100.0 3E-33 1E-37 279.5 28.8 308 23-375 37-452 (500)
67 2pl3_A Probable ATP-dependent 100.0 2.1E-33 7.1E-38 252.4 24.7 208 1-234 25-233 (236)
68 3ly5_A ATP-dependent RNA helic 100.0 2.5E-33 8.7E-38 255.2 22.2 203 2-229 53-258 (262)
69 1z3i_X Similar to RAD54-like; 100.0 9.5E-31 3.3E-35 267.3 33.8 322 23-376 55-528 (644)
70 3mwy_W Chromo domain-containin 100.0 1.3E-31 4.6E-36 280.3 27.4 317 23-376 236-684 (800)
71 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 1.1E-31 3.9E-36 282.6 26.2 324 23-389 271-721 (1038)
72 3jux_A Protein translocase sub 100.0 3.8E-30 1.3E-34 253.4 33.5 319 18-378 71-589 (822)
73 3dkp_A Probable ATP-dependent 100.0 9.2E-32 3.1E-36 243.1 19.0 206 2-235 26-242 (245)
74 2ipc_A Preprotein translocase 100.0 2.3E-26 8E-31 230.7 33.2 130 19-185 76-215 (997)
75 1c4o_A DNA nucleotide excision 100.0 1.4E-26 4.8E-31 236.2 31.3 130 255-385 424-559 (664)
76 2rb4_A ATP-dependent RNA helic 99.9 1.9E-26 6.4E-31 196.6 19.8 156 240-395 5-166 (175)
77 2d7d_A Uvrabc system protein B 99.9 7.6E-26 2.6E-30 230.7 27.6 129 255-384 430-564 (661)
78 2hjv_A ATP-dependent RNA helic 99.9 2.2E-26 7.6E-31 193.7 19.6 152 241-393 8-159 (163)
79 1fuk_A Eukaryotic initiation f 99.9 3.5E-26 1.2E-30 193.0 17.3 152 242-393 3-154 (165)
80 1t5i_A C_terminal domain of A 99.9 1.2E-25 4E-30 190.8 17.5 151 241-392 4-155 (172)
81 2p6n_A ATP-dependent RNA helic 99.9 1.7E-25 5.9E-30 192.7 17.3 165 224-390 11-176 (191)
82 3eaq_A Heat resistant RNA depe 99.9 3.9E-25 1.3E-29 194.1 18.8 143 252-394 14-156 (212)
83 2jgn_A DBX, DDX3, ATP-dependen 99.9 3.4E-25 1.2E-29 190.0 17.6 150 240-390 17-167 (185)
84 2vl7_A XPD; helicase, unknown 99.9 5.9E-25 2E-29 219.9 18.5 104 268-377 383-522 (540)
85 2yjt_D ATP-dependent RNA helic 99.9 2.3E-27 7.7E-32 201.2 0.0 162 242-403 3-164 (170)
86 3i32_A Heat resistant RNA depe 99.9 5E-24 1.7E-28 195.7 17.9 150 244-394 4-153 (300)
87 3crv_A XPD/RAD3 related DNA he 99.9 7.2E-22 2.5E-26 198.3 31.8 309 23-377 3-532 (551)
88 3b6e_A Interferon-induced heli 99.9 3.9E-24 1.3E-28 189.2 11.6 167 19-212 29-216 (216)
89 1rif_A DAR protein, DNA helica 99.9 2.7E-22 9.1E-27 184.7 11.1 154 23-217 113-266 (282)
90 3llm_A ATP-dependent RNA helic 99.9 3.8E-21 1.3E-25 171.9 14.9 169 23-228 61-231 (235)
91 4a15_A XPD helicase, ATP-depen 99.9 9E-20 3.1E-24 184.4 26.3 110 262-376 442-584 (620)
92 2fz4_A DNA repair protein RAD2 99.8 2.5E-19 8.7E-24 159.8 16.7 138 23-216 93-231 (237)
93 1z5z_A Helicase of the SNF2/RA 99.7 6.7E-18 2.3E-22 153.1 12.3 124 253-376 94-224 (271)
94 1w36_D RECD, exodeoxyribonucle 98.8 4E-08 1.4E-12 99.3 13.1 158 12-212 137-298 (608)
95 4b3f_X DNA-binding protein smu 98.5 1.6E-07 5.5E-12 95.9 8.6 68 23-121 189-257 (646)
96 2gk6_A Regulator of nonsense t 98.4 4.3E-06 1.5E-10 84.9 14.9 70 21-120 178-247 (624)
97 2xzl_A ATP-dependent helicase 98.4 5.3E-06 1.8E-10 86.1 15.5 70 22-121 359-428 (802)
98 3upu_A ATP-dependent DNA helic 98.4 3E-06 1E-10 82.8 12.6 76 12-117 14-94 (459)
99 3e1s_A Exodeoxyribonuclease V, 98.4 2.6E-06 8.8E-11 85.2 12.2 126 23-211 189-314 (574)
100 3lfu_A DNA helicase II; SF1 he 98.3 4.1E-05 1.4E-09 78.4 20.3 71 22-121 8-78 (647)
101 2wjy_A Regulator of nonsense t 98.3 9.9E-06 3.4E-10 84.0 14.5 69 22-120 355-423 (800)
102 3hgt_A HDA1 complex subunit 3; 98.0 0.00012 4E-09 66.5 13.3 121 253-378 107-239 (328)
103 2o0j_A Terminase, DNA packagin 97.7 0.00067 2.3E-08 63.8 13.8 120 23-186 163-287 (385)
104 3vkw_A Replicase large subunit 97.4 0.00042 1.4E-08 66.0 8.3 106 41-212 164-269 (446)
105 3cpe_A Terminase, DNA packagin 97.4 0.0034 1.2E-07 63.2 15.3 121 23-186 163-287 (592)
106 2b8t_A Thymidine kinase; deoxy 97.2 0.00041 1.4E-08 60.1 5.6 45 151-197 69-113 (223)
107 2j9r_A Thymidine kinase; TK1, 97.1 0.00068 2.3E-08 57.8 6.0 25 41-65 31-55 (214)
108 2orw_A Thymidine kinase; TMTK, 97.1 0.00038 1.3E-08 58.6 4.0 25 38-62 3-27 (184)
109 3ec2_A DNA replication protein 97.1 0.0021 7.1E-08 53.8 8.6 31 25-55 16-55 (180)
110 2orv_A Thymidine kinase; TP4A 96.9 0.0024 8.3E-08 55.0 7.6 27 39-65 20-46 (234)
111 1pjr_A PCRA; DNA repair, DNA r 96.9 0.0022 7.4E-08 66.3 8.8 71 22-121 10-80 (724)
112 1a5t_A Delta prime, HOLB; zinc 96.9 0.0028 9.6E-08 58.8 8.7 39 24-62 3-48 (334)
113 1xx6_A Thymidine kinase; NESG, 96.8 0.00059 2E-08 57.6 3.3 25 39-63 9-33 (191)
114 1uaa_A REP helicase, protein ( 96.8 0.0033 1.1E-07 64.5 9.4 71 23-122 2-72 (673)
115 2kjq_A DNAA-related protein; s 96.8 0.001 3.4E-08 53.8 4.2 18 37-54 35-52 (149)
116 3e2i_A Thymidine kinase; Zn-bi 96.7 0.0011 3.8E-08 56.4 4.2 24 39-62 29-52 (219)
117 3u61_B DNA polymerase accessor 96.6 0.0095 3.2E-07 54.9 10.3 40 171-210 104-143 (324)
118 3te6_A Regulatory protein SIR3 96.6 0.017 5.7E-07 52.8 11.3 25 39-64 46-70 (318)
119 1l8q_A Chromosomal replication 96.6 0.0059 2E-07 56.4 8.3 17 39-55 38-54 (324)
120 1w4r_A Thymidine kinase; type 96.6 0.0018 6.1E-08 54.3 4.2 24 39-62 21-44 (195)
121 2zpa_A Uncharacterized protein 96.4 0.014 4.8E-07 58.5 10.3 113 23-214 175-289 (671)
122 3u4q_A ATP-dependent helicase/ 96.2 0.0076 2.6E-07 66.0 7.9 71 23-120 10-80 (1232)
123 3h4m_A Proteasome-activating n 96.2 0.021 7.3E-07 51.4 9.7 52 2-55 15-68 (285)
124 2chg_A Replication factor C sm 96.2 0.057 1.9E-06 46.2 11.9 41 171-212 101-141 (226)
125 1d2n_A N-ethylmaleimide-sensit 96.2 0.07 2.4E-06 47.6 12.8 18 39-56 65-82 (272)
126 2w58_A DNAI, primosome compone 96.1 0.013 4.6E-07 49.7 7.6 17 39-55 55-71 (202)
127 3co5_A Putative two-component 96.1 0.008 2.7E-07 48.0 5.6 19 35-53 24-42 (143)
128 4b4t_J 26S protease regulatory 96.1 0.052 1.8E-06 51.1 11.6 52 1-55 145-199 (405)
129 2p65_A Hypothetical protein PF 95.9 0.061 2.1E-06 44.5 10.4 18 39-56 44-61 (187)
130 2gno_A DNA polymerase III, gam 95.8 0.031 1E-06 50.9 8.9 41 170-211 80-120 (305)
131 1jbk_A CLPB protein; beta barr 95.8 0.13 4.6E-06 42.5 12.5 17 39-55 44-60 (195)
132 2z4s_A Chromosomal replication 95.8 0.032 1.1E-06 53.8 9.2 17 39-55 131-147 (440)
133 1gm5_A RECG; helicase, replica 95.8 0.038 1.3E-06 57.1 10.1 81 268-348 416-501 (780)
134 3eie_A Vacuolar protein sortin 95.7 0.031 1.1E-06 51.4 8.6 49 2-56 16-69 (322)
135 1g5t_A COB(I)alamin adenosyltr 95.7 0.033 1.1E-06 46.7 7.6 52 171-222 119-172 (196)
136 2v1u_A Cell division control p 95.6 0.034 1.2E-06 52.4 8.7 17 39-55 45-61 (387)
137 2qgz_A Helicase loader, putati 95.6 0.052 1.8E-06 49.5 9.4 19 38-56 152-170 (308)
138 3bos_A Putative DNA replicatio 95.6 0.011 3.7E-07 51.7 4.6 18 38-55 52-69 (242)
139 4b4t_H 26S protease regulatory 95.5 0.12 4E-06 49.4 11.8 52 1-55 206-260 (467)
140 2qby_B CDC6 homolog 3, cell di 95.5 0.06 2E-06 50.7 9.9 17 39-55 46-62 (384)
141 3kl4_A SRP54, signal recogniti 95.5 0.12 4E-06 49.3 11.7 51 171-221 178-231 (433)
142 1iqp_A RFCS; clamp loader, ext 95.5 0.055 1.9E-06 49.6 9.4 40 171-211 109-148 (327)
143 1fnn_A CDC6P, cell division co 95.5 0.03 1E-06 52.8 7.7 16 40-55 46-61 (389)
144 4b4t_K 26S protease regulatory 95.5 0.098 3.4E-06 49.8 11.0 52 1-55 169-223 (428)
145 2qz4_A Paraplegin; AAA+, SPG7, 95.4 0.063 2.2E-06 47.5 9.2 52 1-55 3-56 (262)
146 3syl_A Protein CBBX; photosynt 95.2 0.02 6.9E-07 52.3 5.2 18 39-56 68-85 (309)
147 4b4t_I 26S protease regulatory 95.1 0.13 4.4E-06 48.7 10.4 52 1-55 179-233 (437)
148 1sxj_D Activator 1 41 kDa subu 95.1 0.055 1.9E-06 50.3 8.0 40 171-211 132-171 (353)
149 2qby_A CDC6 homolog 1, cell di 94.9 0.13 4.5E-06 48.2 10.2 18 38-55 45-62 (386)
150 3pvs_A Replication-associated 94.8 0.066 2.3E-06 51.6 7.9 16 40-55 52-67 (447)
151 3hu3_A Transitional endoplasmi 94.6 0.11 3.9E-06 50.5 9.1 42 173-214 298-349 (489)
152 1sxj_E Activator 1 40 kDa subu 94.5 0.086 2.9E-06 49.0 7.8 43 171-214 133-175 (354)
153 1njg_A DNA polymerase III subu 94.5 0.34 1.2E-05 41.7 11.3 16 40-55 47-62 (250)
154 3pfi_A Holliday junction ATP-d 94.4 0.14 4.8E-06 47.2 9.0 17 39-55 56-72 (338)
155 2qp9_X Vacuolar protein sortin 94.3 0.39 1.3E-05 44.6 11.7 18 39-56 85-102 (355)
156 3oiy_A Reverse gyrase helicase 94.2 0.17 6E-06 48.1 9.5 80 267-346 62-148 (414)
157 3dm5_A SRP54, signal recogniti 94.2 0.47 1.6E-05 45.3 12.2 50 172-221 182-232 (443)
158 2w0m_A SSO2452; RECA, SSPF, un 94.2 0.18 6.3E-06 43.4 8.7 22 37-58 22-43 (235)
159 1sxj_C Activator 1 40 kDa subu 94.0 0.21 7.3E-06 46.1 9.2 39 171-210 109-147 (340)
160 3hjh_A Transcription-repair-co 93.5 0.43 1.5E-05 46.2 10.7 51 37-121 13-63 (483)
161 1sxj_B Activator 1 37 kDa subu 93.5 0.18 6.2E-06 45.9 7.7 39 172-211 107-145 (323)
162 2r6a_A DNAB helicase, replicat 93.4 0.36 1.2E-05 46.6 10.0 26 37-62 202-227 (454)
163 3vfd_A Spastin; ATPase, microt 93.3 0.34 1.1E-05 45.7 9.5 19 38-56 148-166 (389)
164 2eyq_A TRCF, transcription-rep 93.3 0.29 1E-05 53.0 9.9 103 245-347 626-735 (1151)
165 3cf2_A TER ATPase, transitiona 93.1 0.1 3.5E-06 53.8 5.7 53 2-55 475-528 (806)
166 1sxj_A Activator 1 95 kDa subu 92.8 0.34 1.2E-05 47.6 8.9 41 171-213 147-189 (516)
167 4b4t_M 26S protease regulatory 92.7 0.079 2.7E-06 50.5 4.0 52 1-55 178-232 (434)
168 1w5s_A Origin recognition comp 92.6 0.5 1.7E-05 44.7 9.8 17 40-56 52-70 (412)
169 1jr3_A DNA polymerase III subu 92.6 0.61 2.1E-05 43.4 10.1 40 170-210 117-156 (373)
170 1t6n_A Probable ATP-dependent 92.4 0.4 1.4E-05 40.9 7.9 75 269-346 82-167 (220)
171 2fna_A Conserved hypothetical 92.3 6 0.0002 36.1 16.5 30 25-55 18-47 (357)
172 2chq_A Replication factor C sm 92.1 0.08 2.7E-06 48.3 3.2 17 40-56 40-56 (319)
173 1n0w_A DNA repair protein RAD5 92.1 0.42 1.4E-05 41.4 7.8 24 37-60 23-46 (243)
174 4a1f_A DNAB helicase, replicat 92.1 0.18 6.1E-06 46.4 5.5 26 37-62 45-70 (338)
175 3n70_A Transport activator; si 91.8 0.14 4.7E-06 40.7 4.0 20 36-55 22-41 (145)
176 3ber_A Probable ATP-dependent 91.8 0.96 3.3E-05 39.5 9.7 81 262-346 104-195 (249)
177 1oyw_A RECQ helicase, ATP-depe 91.5 3 0.0001 41.0 13.9 142 246-390 43-198 (523)
178 2q6t_A DNAB replication FORK h 91.4 0.42 1.4E-05 45.9 7.6 25 38-62 200-224 (444)
179 4b4t_L 26S protease subunit RP 91.3 0.13 4.3E-06 49.2 3.7 53 1-56 178-233 (437)
180 2v1x_A ATP-dependent DNA helic 91.3 0.75 2.6E-05 46.0 9.5 123 269-392 84-226 (591)
181 1hqc_A RUVB; extended AAA-ATPa 91.3 0.33 1.1E-05 44.3 6.5 17 39-55 39-55 (324)
182 3cmu_A Protein RECA, recombina 91.1 0.17 5.9E-06 57.2 4.9 32 32-63 1415-1452(2050)
183 2zr9_A Protein RECA, recombina 91.1 0.17 5.7E-06 47.0 4.1 32 31-62 48-85 (349)
184 2ehv_A Hypothetical protein PH 91.0 0.25 8.4E-06 43.2 5.1 24 35-58 27-50 (251)
185 4ddu_A Reverse gyrase; topoiso 91.0 0.55 1.9E-05 50.6 8.7 80 267-346 119-205 (1104)
186 2hjv_A ATP-dependent RNA helic 90.8 1.3 4.6E-05 35.6 9.1 73 97-180 35-111 (163)
187 2l8b_A Protein TRAI, DNA helic 90.1 0.3 1E-05 40.1 4.3 121 25-212 36-158 (189)
188 3io5_A Recombination and repai 89.9 0.58 2E-05 42.4 6.4 23 40-62 30-52 (333)
189 2oxc_A Probable ATP-dependent 89.6 0.82 2.8E-05 39.3 7.1 74 267-345 90-174 (230)
190 2rb4_A ATP-dependent RNA helic 89.5 1.8 6.3E-05 35.2 9.0 71 97-178 34-108 (175)
191 2p6n_A ATP-dependent RNA helic 89.5 2.3 7.7E-05 35.4 9.6 71 98-179 55-129 (191)
192 3cf0_A Transitional endoplasmi 89.5 0.13 4.4E-06 46.7 2.0 52 2-55 13-66 (301)
193 1fuk_A Eukaryotic initiation f 89.2 1.8 6.3E-05 34.8 8.6 73 97-180 30-106 (165)
194 3hr8_A Protein RECA; alpha and 89.2 0.35 1.2E-05 44.8 4.6 30 30-59 47-82 (356)
195 1xp8_A RECA protein, recombina 88.8 0.6 2.1E-05 43.5 6.0 32 31-62 61-98 (366)
196 3eaq_A Heat resistant RNA depe 88.7 1.9 6.5E-05 36.5 8.7 71 97-178 31-105 (212)
197 2dr3_A UPF0273 protein PH0284; 88.2 0.55 1.9E-05 40.7 5.1 26 37-62 22-47 (247)
198 1vec_A ATP-dependent RNA helic 87.9 1.5 5E-05 36.7 7.5 74 268-345 70-154 (206)
199 1p9r_A General secretion pathw 87.7 1.1 3.9E-05 42.4 7.2 36 26-62 153-190 (418)
200 3b85_A Phosphate starvation-in 87.6 0.63 2.2E-05 39.5 4.9 34 21-54 5-38 (208)
201 2x8a_A Nuclear valosin-contain 87.6 0.15 5.1E-06 45.5 1.0 51 1-54 7-60 (274)
202 1t5i_A C_terminal domain of A 87.1 2.1 7E-05 34.9 7.6 73 97-180 31-107 (172)
203 1xwi_A SKD1 protein; VPS4B, AA 87.0 0.21 7E-06 45.9 1.6 51 1-55 9-62 (322)
204 1xti_A Probable ATP-dependent 86.6 2 7E-05 40.0 8.4 76 268-346 75-161 (391)
205 3cf2_A TER ATPase, transitiona 86.4 1.6 5.6E-05 44.9 8.0 16 39-54 239-254 (806)
206 1ls1_A Signal recognition part 86.3 15 0.0005 32.8 13.5 19 40-58 100-118 (295)
207 3fe2_A Probable ATP-dependent 86.1 2.6 9E-05 36.4 8.3 75 268-346 101-185 (242)
208 1e9r_A Conjugal transfer prote 85.8 0.8 2.7E-05 43.8 5.2 26 38-64 53-78 (437)
209 2jgn_A DBX, DDX3, ATP-dependen 85.4 4.2 0.00014 33.5 8.8 71 97-178 46-120 (185)
210 3nwn_A Kinesin-like protein KI 85.2 0.57 1.9E-05 43.4 3.6 24 32-55 97-122 (359)
211 1wrb_A DJVLGB; RNA helicase, D 85.0 7.5 0.00026 33.6 10.8 74 269-346 100-183 (253)
212 3hws_A ATP-dependent CLP prote 84.7 1.5 5.3E-05 40.6 6.4 18 38-55 51-68 (363)
213 3i5x_A ATP-dependent RNA helic 84.7 9.4 0.00032 37.6 12.6 77 96-180 338-418 (563)
214 2zts_A Putative uncharacterize 84.7 0.61 2.1E-05 40.5 3.4 25 39-63 31-55 (251)
215 1wp9_A ATP-dependent RNA helic 84.4 7.7 0.00026 36.9 11.6 76 267-347 50-135 (494)
216 1bg2_A Kinesin; motor protein, 84.2 0.74 2.5E-05 42.0 3.8 24 32-55 70-95 (325)
217 3bor_A Human initiation factor 83.9 2 6.8E-05 37.0 6.4 76 268-346 97-182 (237)
218 2bjv_A PSP operon transcriptio 83.9 0.82 2.8E-05 40.3 4.0 18 37-54 28-45 (265)
219 2r44_A Uncharacterized protein 83.9 0.8 2.7E-05 41.9 4.0 25 31-55 39-63 (331)
220 3nbx_X ATPase RAVA; AAA+ ATPas 83.6 1.5 5.2E-05 42.6 6.0 26 29-54 32-57 (500)
221 1v8k_A Kinesin-like protein KI 83.5 0.76 2.6E-05 43.3 3.6 24 33-56 148-173 (410)
222 3dc4_A Kinesin-like protein NO 83.4 0.74 2.5E-05 42.3 3.5 23 33-55 88-112 (344)
223 3iuy_A Probable ATP-dependent 83.3 2.1 7.2E-05 36.5 6.3 75 268-346 93-176 (228)
224 1f9v_A Kinesin-like protein KA 83.3 0.82 2.8E-05 42.1 3.7 25 32-56 77-103 (347)
225 3t0q_A AGR253WP; kinesin, alph 83.2 0.83 2.8E-05 42.1 3.7 25 31-55 77-103 (349)
226 1ofh_A ATP-dependent HSL prote 83.2 2.8 9.6E-05 37.6 7.4 18 38-55 50-67 (310)
227 2vvg_A Kinesin-2; motor protei 83.2 0.85 2.9E-05 42.0 3.8 32 24-55 66-107 (350)
228 3sqw_A ATP-dependent RNA helic 83.1 12 0.00041 37.0 12.6 78 96-181 287-368 (579)
229 2oap_1 GSPE-2, type II secreti 83.0 1.6 5.4E-05 42.7 5.8 38 14-53 237-275 (511)
230 4etp_A Kinesin-like protein KA 83.0 0.83 2.8E-05 43.1 3.7 26 31-56 132-159 (403)
231 2h58_A Kinesin-like protein KI 82.9 0.89 3E-05 41.6 3.8 25 31-55 72-98 (330)
232 2y65_A Kinesin, kinesin heavy 82.9 0.88 3E-05 42.2 3.8 23 33-55 78-102 (365)
233 3lre_A Kinesin-like protein KI 82.9 0.89 3E-05 42.0 3.8 23 33-55 99-123 (355)
234 2pl3_A Probable ATP-dependent 82.9 2.2 7.5E-05 36.7 6.2 74 268-346 96-180 (236)
235 1goj_A Kinesin, kinesin heavy 82.9 0.89 3E-05 42.0 3.8 22 34-55 75-98 (355)
236 3bh0_A DNAB-like replicative h 82.9 2.8 9.5E-05 38.0 7.2 26 37-62 67-92 (315)
237 3b6u_A Kinesin-like protein KI 82.6 0.85 2.9E-05 42.4 3.6 22 34-55 96-119 (372)
238 4a14_A Kinesin, kinesin-like p 82.5 0.93 3.2E-05 41.7 3.8 23 33-55 77-101 (344)
239 2zfi_A Kinesin-like protein KI 82.5 0.93 3.2E-05 42.1 3.8 24 32-55 82-107 (366)
240 1q0u_A Bstdead; DEAD protein, 82.5 0.89 3E-05 38.7 3.5 74 268-345 71-158 (219)
241 3gbj_A KIF13B protein; kinesin 82.5 0.88 3E-05 42.0 3.6 24 32-55 85-110 (354)
242 1t5c_A CENP-E protein, centrom 82.4 0.88 3E-05 41.9 3.6 24 32-55 70-95 (349)
243 1x88_A Kinesin-like protein KI 82.3 0.87 3E-05 42.2 3.5 24 32-55 81-106 (359)
244 4ag6_A VIRB4 ATPase, type IV s 82.3 1.5 5E-05 41.3 5.2 21 37-57 34-54 (392)
245 2nr8_A Kinesin-like protein KI 82.2 0.9 3.1E-05 42.0 3.6 24 32-55 96-121 (358)
246 1yks_A Genome polyprotein [con 82.2 2.9 0.0001 39.9 7.4 69 97-177 177-245 (440)
247 2qmh_A HPR kinase/phosphorylas 82.2 0.73 2.5E-05 38.6 2.7 20 38-57 34-53 (205)
248 1kgd_A CASK, peripheral plasma 82.1 0.88 3E-05 37.4 3.2 18 37-54 4-21 (180)
249 2heh_A KIF2C protein; kinesin, 82.1 0.97 3.3E-05 42.2 3.8 24 33-56 128-153 (387)
250 2gxq_A Heat resistant RNA depe 81.9 4.4 0.00015 33.7 7.7 75 268-346 71-153 (207)
251 3a8t_A Adenylate isopentenyltr 81.8 0.77 2.6E-05 42.0 2.9 19 40-58 42-60 (339)
252 2eyu_A Twitching motility prot 81.7 0.73 2.5E-05 40.7 2.7 20 35-54 22-41 (261)
253 2wbe_C Bipolar kinesin KRP-130 81.4 0.96 3.3E-05 42.1 3.5 22 34-55 95-118 (373)
254 1u0j_A DNA replication protein 81.2 2.8 9.7E-05 36.8 6.2 44 10-56 73-122 (267)
255 3cob_A Kinesin heavy chain-lik 81.1 0.91 3.1E-05 42.1 3.2 25 31-55 71-97 (369)
256 3exa_A TRNA delta(2)-isopenten 81.0 0.87 3E-05 41.2 2.9 19 40-58 5-23 (322)
257 3u06_A Protein claret segregat 81.0 1 3.4E-05 42.6 3.5 25 31-55 130-156 (412)
258 3foz_A TRNA delta(2)-isopenten 80.9 0.99 3.4E-05 40.7 3.2 18 41-58 13-30 (316)
259 2i4i_A ATP-dependent RNA helic 80.7 6.6 0.00023 36.8 9.3 72 96-178 275-350 (417)
260 2owm_A Nckin3-434, related to 80.6 1.2 4E-05 42.6 3.8 23 33-55 130-154 (443)
261 3i32_A Heat resistant RNA depe 80.6 4.3 0.00015 36.5 7.4 71 97-178 28-102 (300)
262 1ixz_A ATP-dependent metallopr 80.5 0.53 1.8E-05 41.2 1.3 50 2-54 14-65 (254)
263 3bfn_A Kinesin-like protein KI 80.4 0.96 3.3E-05 42.2 3.1 32 24-55 75-116 (388)
264 2z43_A DNA repair and recombin 80.3 2.1 7E-05 39.1 5.3 23 39-61 108-130 (324)
265 2gza_A Type IV secretion syste 80.3 1.1 3.6E-05 41.8 3.4 19 35-53 172-190 (361)
266 2r8r_A Sensor protein; KDPD, P 80.1 2 6.7E-05 36.8 4.7 25 40-64 8-32 (228)
267 3tau_A Guanylate kinase, GMP k 80.1 1.1 3.9E-05 37.8 3.3 19 37-55 7-25 (208)
268 3vaa_A Shikimate kinase, SK; s 80.0 1.2 3.9E-05 37.4 3.3 19 37-55 24-42 (199)
269 3vkg_A Dynein heavy chain, cyt 80.0 4.5 0.00015 48.2 8.9 48 10-58 875-926 (3245)
270 2zan_A Vacuolar protein sortin 79.9 0.82 2.8E-05 43.9 2.6 17 39-55 168-184 (444)
271 1gku_B Reverse gyrase, TOP-RG; 79.8 3 0.0001 44.8 7.1 77 268-346 98-184 (1054)
272 2rep_A Kinesin-like protein KI 79.8 1.1 3.8E-05 41.7 3.3 32 24-55 93-133 (376)
273 1ojl_A Transcriptional regulat 79.6 1.3 4.5E-05 40.0 3.7 18 37-54 24-41 (304)
274 1tue_A Replication protein E1; 79.5 1 3.5E-05 37.9 2.6 21 40-61 60-80 (212)
275 3u4q_B ATP-dependent helicase/ 79.5 1.6 5.5E-05 47.6 5.0 32 270-301 343-375 (1166)
276 4akg_A Glutathione S-transfera 79.3 3.7 0.00013 48.3 8.0 48 10-58 892-943 (2695)
277 1qde_A EIF4A, translation init 79.2 3.5 0.00012 34.9 6.2 75 267-346 80-164 (224)
278 2ffh_A Protein (FFH); SRP54, s 79.2 23 0.00078 33.5 12.2 20 40-59 100-119 (425)
279 3jvv_A Twitching mobility prot 79.0 1.2 4E-05 41.3 3.2 26 37-63 122-147 (356)
280 3lw7_A Adenylate kinase relate 78.8 0.91 3.1E-05 36.8 2.2 16 40-55 3-18 (179)
281 3trf_A Shikimate kinase, SK; a 78.8 1.3 4.4E-05 36.4 3.2 21 38-58 5-25 (185)
282 2cvh_A DNA repair and recombin 78.7 2 6.8E-05 36.3 4.5 23 38-60 20-42 (220)
283 3bgw_A DNAB-like replicative h 78.7 4.3 0.00015 38.8 7.2 26 37-62 196-221 (444)
284 1lvg_A Guanylate kinase, GMP k 78.6 1.3 4.4E-05 37.1 3.1 19 37-55 3-21 (198)
285 2ze6_A Isopentenyl transferase 78.5 1.2 4E-05 39.1 2.9 16 41-56 4-19 (253)
286 1iy2_A ATP-dependent metallopr 78.4 0.66 2.3E-05 41.3 1.3 50 2-54 38-89 (278)
287 3b9p_A CG5977-PA, isoform A; A 78.4 1.2 4.3E-05 39.8 3.2 18 38-55 54-71 (297)
288 1w36_B RECB, exodeoxyribonucle 78.0 3.8 0.00013 44.7 7.3 62 40-120 18-79 (1180)
289 3t15_A Ribulose bisphosphate c 77.9 1.3 4.6E-05 39.7 3.2 17 39-55 37-53 (293)
290 2r62_A Cell division protease 77.9 0.36 1.2E-05 42.7 -0.6 18 39-56 45-62 (268)
291 3ney_A 55 kDa erythrocyte memb 77.7 1.6 5.3E-05 36.6 3.3 18 37-54 18-35 (197)
292 3fht_A ATP-dependent RNA helic 77.4 7.3 0.00025 36.3 8.5 72 97-179 266-341 (412)
293 1u94_A RECA protein, recombina 77.4 2.5 8.7E-05 39.0 5.0 32 31-62 50-87 (356)
294 3ly5_A ATP-dependent RNA helic 77.3 8.9 0.0003 33.5 8.4 75 268-346 125-210 (262)
295 1lv7_A FTSH; alpha/beta domain 77.2 1.4 4.7E-05 38.6 3.0 51 2-55 10-62 (257)
296 2pt7_A CAG-ALFA; ATPase, prote 77.2 1.1 3.7E-05 41.1 2.4 19 35-53 168-186 (330)
297 1ex7_A Guanylate kinase; subst 77.0 1.3 4.5E-05 36.7 2.6 16 39-54 2-17 (186)
298 3iij_A Coilin-interacting nucl 76.9 1.3 4.5E-05 36.2 2.7 20 37-56 10-29 (180)
299 3crm_A TRNA delta(2)-isopenten 76.9 1.5 5.2E-05 39.8 3.2 19 40-58 7-25 (323)
300 1qhx_A CPT, protein (chloramph 76.9 1.3 4.3E-05 36.2 2.5 17 39-55 4-20 (178)
301 2j41_A Guanylate kinase; GMP, 76.5 1.6 5.5E-05 36.5 3.1 19 36-54 4-22 (207)
302 3uk6_A RUVB-like 2; hexameric 76.5 1.4 4.6E-05 41.0 2.9 18 39-56 71-88 (368)
303 3pey_A ATP-dependent RNA helic 76.1 8.5 0.00029 35.6 8.5 76 96-182 242-321 (395)
304 2i1q_A DNA repair and recombin 76.1 2.6 9E-05 38.3 4.7 22 40-61 100-121 (322)
305 2ius_A DNA translocase FTSK; n 76.0 3.8 0.00013 39.8 5.9 18 38-55 167-184 (512)
306 1nlf_A Regulatory protein REPA 75.8 3.4 0.00012 36.6 5.3 27 34-60 26-52 (279)
307 2ewv_A Twitching motility prot 75.8 1.3 4.5E-05 41.3 2.6 19 36-54 134-152 (372)
308 2qor_A Guanylate kinase; phosp 75.7 1.7 5.7E-05 36.5 3.0 20 36-55 10-29 (204)
309 3tr0_A Guanylate kinase, GMP k 75.5 1.9 6.3E-05 36.1 3.3 18 37-54 6-23 (205)
310 1zp6_A Hypothetical protein AT 75.4 1.3 4.3E-05 36.7 2.2 20 35-54 6-25 (191)
311 1um8_A ATP-dependent CLP prote 75.4 1.8 6E-05 40.4 3.4 19 38-56 72-90 (376)
312 2wv9_A Flavivirin protease NS2 75.3 6.3 0.00021 39.9 7.6 70 96-177 409-478 (673)
313 3d3q_A TRNA delta(2)-isopenten 75.3 1.8 6E-05 39.7 3.2 18 40-57 9-26 (340)
314 2v6i_A RNA helicase; membrane, 75.3 4.4 0.00015 38.6 6.2 55 97-156 171-225 (431)
315 1z6g_A Guanylate kinase; struc 75.0 2 6.8E-05 36.6 3.3 19 36-54 21-39 (218)
316 2px0_A Flagellar biosynthesis 74.9 3.3 0.00011 37.2 4.9 21 39-59 106-126 (296)
317 1ly1_A Polynucleotide kinase; 74.8 1.4 4.7E-05 35.9 2.2 16 40-55 4-19 (181)
318 1s2m_A Putative ATP-dependent 74.6 9.5 0.00032 35.5 8.4 72 96-178 257-332 (400)
319 2c9o_A RUVB-like 1; hexameric 74.5 2 6.7E-05 41.4 3.5 18 39-56 64-81 (456)
320 2d7d_A Uvrabc system protein B 74.2 16 0.00055 36.9 10.3 78 96-184 444-525 (661)
321 1ry6_A Internal kinesin; kines 74.2 2.2 7.6E-05 39.4 3.6 19 37-55 82-102 (360)
322 2r2a_A Uncharacterized protein 74.1 2.2 7.4E-05 35.8 3.3 21 41-61 8-28 (199)
323 4gp7_A Metallophosphoesterase; 74.1 1.2 4E-05 36.4 1.6 19 37-55 8-26 (171)
324 3cmw_A Protein RECA, recombina 74.0 2.6 9E-05 47.1 4.7 89 39-186 1432-1523(1706)
325 1y63_A LMAJ004144AAA protein; 74.0 2.1 7.3E-05 35.2 3.2 18 38-55 10-27 (184)
326 2j0s_A ATP-dependent RNA helic 73.7 10 0.00036 35.3 8.4 71 97-178 276-350 (410)
327 2db3_A ATP-dependent RNA helic 73.6 12 0.0004 35.6 8.8 69 99-178 302-374 (434)
328 3a00_A Guanylate kinase, GMP k 73.5 2.2 7.7E-05 35.1 3.2 16 39-54 2-17 (186)
329 3eph_A TRNA isopentenyltransfe 73.4 2 6.9E-05 40.3 3.2 19 40-58 4-22 (409)
330 1cr0_A DNA primase/helicase; R 73.4 3.3 0.00011 37.0 4.6 23 35-57 32-54 (296)
331 3kb2_A SPBC2 prophage-derived 73.3 2 6.9E-05 34.6 2.9 16 40-55 3-18 (173)
332 2iut_A DNA translocase FTSK; n 73.2 5 0.00017 39.5 6.0 24 39-62 215-238 (574)
333 3d8b_A Fidgetin-like protein 1 73.0 2.3 8E-05 39.3 3.5 19 38-56 117-135 (357)
334 1v5w_A DMC1, meiotic recombina 73.0 3.8 0.00013 37.6 5.0 22 40-61 124-145 (343)
335 1kag_A SKI, shikimate kinase I 72.9 2.4 8.3E-05 34.2 3.3 18 38-55 4-21 (173)
336 3fmo_B ATP-dependent RNA helic 72.8 4.2 0.00015 36.5 5.2 73 267-346 160-244 (300)
337 1kht_A Adenylate kinase; phosp 72.8 1.8 6.1E-05 35.6 2.5 18 38-55 3-20 (192)
338 1hv8_A Putative ATP-dependent 72.7 13 0.00045 33.8 8.8 75 95-180 236-314 (367)
339 2ce7_A Cell division protein F 72.5 1.3 4.4E-05 42.8 1.7 49 2-55 14-66 (476)
340 2jlq_A Serine protease subunit 72.5 8.6 0.00029 36.8 7.5 69 97-177 188-256 (451)
341 1c4o_A DNA nucleotide excision 71.9 22 0.00074 36.0 10.6 77 97-184 439-519 (664)
342 4fcw_A Chaperone protein CLPB; 71.7 2.1 7.3E-05 38.5 2.9 16 40-55 49-64 (311)
343 1znw_A Guanylate kinase, GMP k 71.7 2.6 8.8E-05 35.4 3.2 21 34-54 16-36 (207)
344 1rj9_A FTSY, signal recognitio 71.3 3.9 0.00013 36.9 4.4 16 39-54 103-118 (304)
345 1vma_A Cell division protein F 70.6 4.3 0.00015 36.6 4.6 18 41-58 107-124 (306)
346 1knq_A Gluconate kinase; ALFA/ 70.3 1.8 6.3E-05 35.1 1.9 18 38-55 8-25 (175)
347 4eun_A Thermoresistant glucoki 70.3 2.9 0.0001 34.8 3.3 19 37-55 28-46 (200)
348 1f2t_A RAD50 ABC-ATPase; DNA d 70.2 2.1 7.3E-05 33.9 2.2 15 40-54 25-39 (149)
349 1in4_A RUVB, holliday junction 69.9 2.6 9E-05 38.5 3.1 17 39-55 52-68 (334)
350 4dzz_A Plasmid partitioning pr 69.5 11 0.00037 31.2 6.7 21 42-62 6-26 (206)
351 1s96_A Guanylate kinase, GMP k 69.4 3.1 0.00011 35.4 3.3 19 36-54 14-32 (219)
352 3lnc_A Guanylate kinase, GMP k 69.2 1.4 4.8E-05 37.9 1.0 20 35-54 24-43 (231)
353 1g8p_A Magnesium-chelatase 38 68.9 1.9 6.6E-05 39.5 2.0 18 38-55 45-62 (350)
354 1sky_E F1-ATPase, F1-ATP synth 68.5 4.6 0.00016 38.7 4.4 29 31-59 141-172 (473)
355 3gk5_A Uncharacterized rhodane 68.4 5.3 0.00018 29.4 4.0 37 267-303 53-89 (108)
356 1xjc_A MOBB protein homolog; s 68.4 6.3 0.00021 31.9 4.7 24 40-64 6-29 (169)
357 2rhm_A Putative kinase; P-loop 68.3 2.1 7.3E-05 35.2 2.0 17 39-55 6-22 (193)
358 1gvn_B Zeta; postsegregational 68.1 2.1 7.3E-05 38.2 2.0 16 40-55 35-50 (287)
359 2yvu_A Probable adenylyl-sulfa 68.0 5.8 0.0002 32.4 4.6 17 39-55 14-30 (186)
360 2l82_A Designed protein OR32; 68.0 19 0.00066 26.0 6.5 50 273-322 6-55 (162)
361 1zu4_A FTSY; GTPase, signal re 67.9 5.2 0.00018 36.3 4.6 19 41-59 108-126 (320)
362 3t61_A Gluconokinase; PSI-biol 67.9 3 0.0001 34.8 2.8 16 40-55 20-35 (202)
363 3pxg_A Negative regulator of g 67.6 4.8 0.00017 38.8 4.5 19 38-56 201-219 (468)
364 3uie_A Adenylyl-sulfate kinase 67.3 3 0.0001 34.7 2.7 19 37-55 24-42 (200)
365 3tqc_A Pantothenate kinase; bi 67.3 11 0.00036 34.3 6.5 14 41-54 95-108 (321)
366 3cm0_A Adenylate kinase; ATP-b 67.2 3.3 0.00011 33.9 2.9 17 39-55 5-21 (186)
367 1zuh_A Shikimate kinase; alpha 67.2 3.6 0.00012 33.1 3.1 19 39-57 8-26 (168)
368 2bdt_A BH3686; alpha-beta prot 67.0 3.3 0.00011 34.0 2.9 16 40-55 4-19 (189)
369 4h1g_A Maltose binding protein 66.6 3.8 0.00013 41.9 3.8 25 31-55 454-480 (715)
370 2c95_A Adenylate kinase 1; tra 66.6 3.8 0.00013 33.8 3.2 19 37-55 8-26 (196)
371 2fsf_A Preprotein translocase 66.5 22 0.00075 36.7 9.1 75 263-343 109-200 (853)
372 1tev_A UMP-CMP kinase; ploop, 66.2 3.5 0.00012 33.9 2.9 17 39-55 4-20 (196)
373 3qf7_A RAD50; ABC-ATPase, ATPa 66.1 2.6 8.9E-05 39.2 2.2 16 40-55 25-40 (365)
374 4a74_A DNA repair and recombin 66.1 2.5 8.5E-05 36.0 2.0 19 37-55 24-42 (231)
375 1via_A Shikimate kinase; struc 66.0 3.9 0.00013 33.1 3.1 17 40-56 6-22 (175)
376 3fb4_A Adenylate kinase; psych 65.8 4.1 0.00014 34.3 3.3 16 41-56 3-18 (216)
377 3b9q_A Chloroplast SRP recepto 65.8 6.1 0.00021 35.5 4.6 16 40-55 102-117 (302)
378 1m7g_A Adenylylsulfate kinase; 65.7 3.6 0.00012 34.6 2.9 30 25-55 13-42 (211)
379 2v9p_A Replication protein E1; 65.7 3.6 0.00012 37.1 3.0 17 37-53 125-141 (305)
380 1zd8_A GTP:AMP phosphotransfer 65.6 3.7 0.00013 35.0 3.0 17 39-55 8-24 (227)
381 2yjt_D ATP-dependent RNA helic 68.9 1.3 4.5E-05 36.0 0.0 73 97-180 30-106 (170)
382 1nks_A Adenylate kinase; therm 65.2 4.1 0.00014 33.4 3.1 16 40-55 3-18 (194)
383 1e6c_A Shikimate kinase; phosp 65.2 3.9 0.00013 32.9 2.9 16 40-55 4-19 (173)
384 1tf5_A Preprotein translocase 65.0 29 0.00099 35.8 9.7 77 261-343 116-209 (844)
385 2v54_A DTMP kinase, thymidylat 64.8 4.4 0.00015 33.6 3.3 18 38-55 4-21 (204)
386 1g41_A Heat shock protein HSLU 64.8 4.2 0.00014 38.7 3.4 18 38-55 50-67 (444)
387 1nij_A Hypothetical protein YJ 64.7 5.2 0.00018 36.2 4.0 14 41-54 7-20 (318)
388 1fuu_A Yeast initiation factor 64.6 14 0.00047 34.2 7.0 75 267-346 87-171 (394)
389 1q57_A DNA primase/helicase; d 64.3 5.4 0.00018 38.8 4.2 26 37-62 241-266 (503)
390 2iyv_A Shikimate kinase, SK; t 64.1 4.1 0.00014 33.3 2.9 17 40-56 4-20 (184)
391 1qf9_A UMP/CMP kinase, protein 64.0 3.7 0.00013 33.6 2.7 16 40-55 8-23 (194)
392 2bwj_A Adenylate kinase 5; pho 64.0 4.5 0.00015 33.4 3.2 18 38-55 12-29 (199)
393 3k1j_A LON protease, ATP-depen 64.0 5.9 0.0002 39.6 4.5 22 33-54 55-76 (604)
394 2j37_W Signal recognition part 63.9 35 0.0012 33.0 9.7 20 40-59 103-122 (504)
395 3nwj_A ATSK2; P loop, shikimat 63.7 5 0.00017 35.0 3.5 18 38-55 48-65 (250)
396 3tif_A Uncharacterized ABC tra 63.7 3.1 0.00011 35.9 2.1 17 37-53 30-46 (235)
397 3foj_A Uncharacterized protein 63.7 5.2 0.00018 28.9 3.1 36 268-303 55-90 (100)
398 3dl0_A Adenylate kinase; phosp 63.7 4.1 0.00014 34.3 2.9 16 41-56 3-18 (216)
399 4a2p_A RIG-I, retinoic acid in 63.6 11 0.00038 36.8 6.5 74 269-346 55-139 (556)
400 3c8u_A Fructokinase; YP_612366 63.6 3.7 0.00013 34.5 2.5 16 39-54 23-38 (208)
401 3kta_A Chromosome segregation 63.5 4.2 0.00014 33.1 2.9 15 40-54 28-42 (182)
402 2jaq_A Deoxyguanosine kinase; 63.4 4.2 0.00014 33.7 2.9 15 41-55 3-17 (205)
403 1ye8_A Protein THEP1, hypothet 63.3 4.5 0.00015 33.1 2.9 15 40-54 2-16 (178)
404 3eme_A Rhodanese-like domain p 63.3 5.1 0.00018 29.1 3.0 37 267-303 54-90 (103)
405 3g5j_A Putative ATP/GTP bindin 63.2 9.3 0.00032 29.1 4.7 38 267-304 86-125 (134)
406 1aky_A Adenylate kinase; ATP:A 63.2 4.9 0.00017 34.0 3.3 17 39-55 5-21 (220)
407 1zak_A Adenylate kinase; ATP:A 63.1 5.2 0.00018 33.9 3.4 18 39-56 6-23 (222)
408 2pez_A Bifunctional 3'-phospho 63.1 3.3 0.00011 33.7 2.1 18 38-55 5-22 (179)
409 2cdn_A Adenylate kinase; phosp 63.0 4.4 0.00015 33.7 2.9 16 40-55 22-37 (201)
410 3auy_A DNA double-strand break 62.9 3 0.0001 38.8 2.0 15 40-54 27-41 (371)
411 1c9k_A COBU, adenosylcobinamid 62.7 3.8 0.00013 33.7 2.3 14 41-54 2-15 (180)
412 3f9v_A Minichromosome maintena 62.5 3.8 0.00013 40.8 2.8 14 40-53 329-342 (595)
413 1ak2_A Adenylate kinase isoenz 62.3 5.9 0.0002 33.9 3.7 18 39-56 17-34 (233)
414 2vhj_A Ntpase P4, P4; non- hyd 62.3 4.4 0.00015 36.7 2.9 24 38-61 123-146 (331)
415 3a4m_A L-seryl-tRNA(SEC) kinas 62.3 3.5 0.00012 36.1 2.2 16 40-55 6-21 (260)
416 4a2q_A RIG-I, retinoic acid in 62.1 14 0.00047 38.4 7.0 74 269-346 296-380 (797)
417 1cke_A CK, MSSA, protein (cyti 62.0 4.6 0.00016 34.2 2.9 17 39-55 6-22 (227)
418 2i3b_A HCR-ntpase, human cance 61.9 5.6 0.00019 32.9 3.3 41 170-213 103-145 (189)
419 2pt5_A Shikimate kinase, SK; a 61.8 4.9 0.00017 32.1 2.9 16 40-55 2-17 (168)
420 1ukz_A Uridylate kinase; trans 61.8 4.7 0.00016 33.5 2.9 16 40-55 17-32 (203)
421 2vli_A Antibiotic resistance p 61.6 3 0.0001 34.0 1.6 17 39-55 6-22 (183)
422 2oca_A DAR protein, ATP-depend 61.5 79 0.0027 30.3 12.1 74 99-182 349-426 (510)
423 2v3c_C SRP54, signal recogniti 61.4 6.5 0.00022 37.4 4.1 22 40-61 101-122 (432)
424 2fz4_A DNA repair protein RAD2 61.3 33 0.0011 29.2 8.4 67 246-326 111-178 (237)
425 2f1r_A Molybdopterin-guanine d 61.3 3.5 0.00012 33.6 1.9 16 40-55 4-19 (171)
426 3dkp_A Probable ATP-dependent 61.2 3.4 0.00012 35.6 2.0 76 268-346 97-184 (245)
427 3tbk_A RIG-I helicase domain; 61.1 8.8 0.0003 37.5 5.2 74 269-346 52-136 (555)
428 2qt1_A Nicotinamide riboside k 61.0 2.9 0.0001 35.0 1.5 18 37-54 20-37 (207)
429 2cbz_A Multidrug resistance-as 61.0 3.7 0.00013 35.4 2.1 17 37-53 30-46 (237)
430 2z0h_A DTMP kinase, thymidylat 60.9 3.9 0.00013 33.7 2.2 15 41-55 3-17 (197)
431 3sr0_A Adenylate kinase; phosp 60.8 6 0.00021 33.3 3.3 17 41-57 3-19 (206)
432 3e70_C DPA, signal recognition 60.7 8.5 0.00029 35.0 4.6 15 40-54 131-145 (328)
433 1nkt_A Preprotein translocase 60.5 32 0.0011 35.8 9.0 77 261-343 144-237 (922)
434 3iwh_A Rhodanese-like domain p 60.4 6.3 0.00022 28.8 3.0 37 267-303 54-90 (103)
435 2plr_A DTMP kinase, probable t 60.4 5.2 0.00018 33.4 2.9 18 38-55 4-21 (213)
436 3asz_A Uridine kinase; cytidin 60.4 4.5 0.00015 33.9 2.5 16 39-54 7-22 (211)
437 2og2_A Putative signal recogni 60.3 8.5 0.00029 35.5 4.5 16 40-55 159-174 (359)
438 2xau_A PRE-mRNA-splicing facto 60.2 22 0.00076 36.6 8.1 76 97-178 303-393 (773)
439 2whx_A Serine protease/ntpase/ 60.2 14 0.00047 37.0 6.4 69 97-177 355-423 (618)
440 1ypw_A Transitional endoplasmi 60.0 1.5 5.2E-05 45.5 -0.6 19 37-55 510-528 (806)
441 1jjv_A Dephospho-COA kinase; P 59.8 5.3 0.00018 33.3 2.8 15 41-55 5-19 (206)
442 1sgw_A Putative ABC transporte 59.8 4.2 0.00014 34.5 2.2 31 170-200 149-179 (214)
443 1e4v_A Adenylate kinase; trans 59.5 5 0.00017 33.8 2.7 16 40-55 2-17 (214)
444 2pbr_A DTMP kinase, thymidylat 59.5 5.4 0.00018 32.7 2.8 15 41-55 3-17 (195)
445 3tqf_A HPR(Ser) kinase; transf 59.4 5.1 0.00017 32.6 2.5 24 37-60 15-38 (181)
446 3m6a_A ATP-dependent protease 59.2 5.4 0.00019 39.3 3.2 18 38-55 108-125 (543)
447 3tlx_A Adenylate kinase 2; str 59.1 6.7 0.00023 33.9 3.5 18 39-56 30-47 (243)
448 3cmw_A Protein RECA, recombina 59.1 12 0.00041 42.0 6.1 27 38-64 34-60 (1706)
449 1np6_A Molybdopterin-guanine d 58.9 14 0.00047 30.0 5.1 23 40-63 8-30 (174)
450 1j8m_F SRP54, signal recogniti 58.9 8.6 0.00029 34.4 4.2 20 40-59 100-119 (297)
451 3umf_A Adenylate kinase; rossm 58.8 6.8 0.00023 33.2 3.3 19 39-57 30-48 (217)
452 2if2_A Dephospho-COA kinase; a 58.7 5.4 0.00018 33.2 2.7 16 40-55 3-18 (204)
453 3gfo_A Cobalt import ATP-bindi 58.7 4.2 0.00014 36.0 2.1 17 37-53 33-49 (275)
454 1wv9_A Rhodanese homolog TT165 58.6 7.9 0.00027 27.5 3.2 35 270-304 54-88 (94)
455 3nh6_A ATP-binding cassette SU 58.6 4.4 0.00015 36.5 2.2 17 37-53 79-95 (306)
456 3pxi_A Negative regulator of g 58.5 8.2 0.00028 39.8 4.5 19 38-56 201-219 (758)
457 3bs4_A Uncharacterized protein 58.5 12 0.00042 32.6 5.0 52 39-122 22-73 (260)
458 4akg_A Glutathione S-transfera 58.5 6.2 0.00021 46.5 3.9 21 35-55 1264-1284(2695)
459 2wwf_A Thymidilate kinase, put 58.4 5.9 0.0002 33.0 3.0 18 38-55 10-27 (212)
460 2pze_A Cystic fibrosis transme 58.4 4.4 0.00015 34.7 2.1 17 37-53 33-49 (229)
461 2xb4_A Adenylate kinase; ATP-b 58.4 5.8 0.0002 33.7 2.9 15 41-55 3-17 (223)
462 2ipc_A Preprotein translocase 58.3 30 0.001 36.0 8.4 62 260-327 111-176 (997)
463 4e22_A Cytidylate kinase; P-lo 58.1 6.5 0.00022 34.2 3.2 18 38-55 27-44 (252)
464 2ff7_A Alpha-hemolysin translo 58.0 4.4 0.00015 35.2 2.1 17 37-53 34-50 (247)
465 1uf9_A TT1252 protein; P-loop, 58.0 5.5 0.00019 32.9 2.7 16 40-55 10-25 (203)
466 3qks_A DNA double-strand break 57.7 7.4 0.00025 32.5 3.4 15 40-54 25-39 (203)
467 2ghi_A Transport protein; mult 57.7 4.6 0.00016 35.4 2.1 17 37-53 45-61 (260)
468 1nn5_A Similar to deoxythymidy 57.3 6.5 0.00022 32.9 3.0 18 38-55 9-26 (215)
469 2bbw_A Adenylate kinase 4, AK4 57.2 6.2 0.00021 34.1 2.9 16 39-54 28-43 (246)
470 3cmu_A Protein RECA, recombina 57.2 8.7 0.0003 43.8 4.6 29 37-65 1080-1108(2050)
471 4g1u_C Hemin import ATP-bindin 57.0 4.7 0.00016 35.5 2.1 17 37-53 36-52 (266)
472 1ko7_A HPR kinase/phosphatase; 57.0 20 0.00067 32.3 6.2 53 7-59 91-165 (314)
473 1htw_A HI0065; nucleotide-bind 56.9 5.7 0.0002 31.7 2.4 17 37-53 32-48 (158)
474 2z83_A Helicase/nucleoside tri 56.8 9 0.00031 36.7 4.3 55 97-156 190-244 (459)
475 3lda_A DNA repair protein RAD5 56.7 8.8 0.0003 36.0 4.0 23 39-61 179-201 (400)
476 3be4_A Adenylate kinase; malar 56.7 8 0.00027 32.6 3.5 17 39-55 6-22 (217)
477 2p5t_B PEZT; postsegregational 56.7 5.1 0.00017 34.9 2.3 16 40-55 34-49 (253)
478 3eiq_A Eukaryotic initiation f 56.7 27 0.00091 32.4 7.5 76 268-346 107-192 (414)
479 2pcj_A ABC transporter, lipopr 56.5 4.5 0.00015 34.5 1.9 17 37-53 29-45 (224)
480 1vht_A Dephospho-COA kinase; s 56.0 5.3 0.00018 33.7 2.2 16 40-55 6-21 (218)
481 1g6h_A High-affinity branched- 56.0 4.9 0.00017 35.1 2.1 17 37-53 32-48 (257)
482 1ji0_A ABC transporter; ATP bi 55.9 5 0.00017 34.7 2.1 17 37-53 31-47 (240)
483 3hix_A ALR3790 protein; rhodan 55.7 9.4 0.00032 27.9 3.3 37 267-303 50-87 (106)
484 1b0u_A Histidine permease; ABC 55.7 5.2 0.00018 35.1 2.2 17 37-53 31-47 (262)
485 1mv5_A LMRA, multidrug resista 55.6 4.4 0.00015 35.1 1.7 30 171-200 156-185 (243)
486 2z0m_A 337AA long hypothetical 55.1 46 0.0016 29.6 8.7 72 269-345 56-137 (337)
487 2r2a_A Uncharacterized protein 55.0 8.9 0.0003 32.0 3.4 41 172-212 87-132 (199)
488 2dhr_A FTSH; AAA+ protein, hex 55.0 6.7 0.00023 38.1 2.9 17 39-55 65-81 (499)
489 1vpl_A ABC transporter, ATP-bi 55.0 5.5 0.00019 34.8 2.2 31 170-200 162-192 (256)
490 2fwr_A DNA repair protein RAD2 54.9 28 0.00096 33.2 7.5 85 247-345 112-200 (472)
491 3qkt_A DNA double-strand break 54.8 5.4 0.00019 36.5 2.2 16 40-55 25-40 (339)
492 2yhs_A FTSY, cell division pro 54.8 12 0.0004 36.2 4.6 16 40-55 295-310 (503)
493 2qi9_C Vitamin B12 import ATP- 54.6 5.5 0.00019 34.6 2.1 17 37-53 25-41 (249)
494 2grj_A Dephospho-COA kinase; T 54.5 7.6 0.00026 32.2 2.9 16 41-56 15-30 (192)
495 4gl2_A Interferon-induced heli 54.5 2.4 8.3E-05 43.2 -0.2 74 269-346 56-145 (699)
496 2zu0_C Probable ATP-dependent 54.3 7.2 0.00025 34.3 2.9 31 171-201 181-211 (267)
497 1tf7_A KAIC; homohexamer, hexa 54.3 11 0.00037 36.9 4.4 21 37-57 280-300 (525)
498 2nq2_C Hypothetical ABC transp 54.2 5.6 0.00019 34.7 2.1 30 171-200 145-174 (253)
499 1odf_A YGR205W, hypothetical 3 54.2 7.4 0.00025 34.7 2.9 15 41-55 34-48 (290)
500 2olj_A Amino acid ABC transpor 54.1 5.8 0.0002 34.9 2.2 17 37-53 49-65 (263)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=2.6e-59 Score=458.45 Aligned_cols=364 Identities=36% Similarity=0.624 Sum_probs=320.7
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQN 80 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 80 (453)
.+|++++|++.+.++|.++||..|+++|+++++.++++++++++||||||||++|++|++..+......
T Consensus 56 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~----------- 124 (434)
T 2db3_A 56 QHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE----------- 124 (434)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC-----------
T ss_pred CChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc-----------
Confidence 479999999999999999999999999999999999999999999999999999999999988763211
Q ss_pred cccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHH
Q psy9399 81 NNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~ 160 (453)
....++++||++||++|+.|+.+++.+++.... +++..++||.....+...+..+++|+|+||++|.
T Consensus 125 ------------~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~-~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~ 191 (434)
T 2db3_A 125 ------------LELGRPQVVIVSPTRELAIQIFNEARKFAFESY-LKIGIVYGGTSFRHQNECITRGCHVVIATPGRLL 191 (434)
T ss_dssp ------------CCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSS-CCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHH
T ss_pred ------------cccCCccEEEEecCHHHHHHHHHHHHHHhccCC-cEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHH
Confidence 022467999999999999999999999876554 7888899999988888888889999999999999
Q ss_pred HHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhC--CCCccEEEEEeecChHHHHHHHhhcCCCeEEEeccccc
Q psy9399 161 DHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDAT--PVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238 (453)
Q Consensus 161 ~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~--~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (453)
+++......+.+++++|+||||++.+++|...+..++..+ +...|++++|||++..+..+...++.++..+.......
T Consensus 192 ~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~ 271 (434)
T 2db3_A 192 DFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGG 271 (434)
T ss_dssp HHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTC
T ss_pred HHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccc
Confidence 9999888889999999999999999999999999998875 56789999999999999999998999998888776655
Q ss_pred ccccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcC
Q psy9399 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRG 318 (453)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 318 (453)
....+.+.+..+.... +...+..++.... .++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|
T Consensus 272 ~~~~i~~~~~~~~~~~-k~~~l~~~l~~~~-~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g 349 (434)
T 2db3_A 272 ACSDVKQTIYEVNKYA-KRSKLIEILSEQA-DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNG 349 (434)
T ss_dssp CCTTEEEEEEECCGGG-HHHHHHHHHHHCC-TTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTS
T ss_pred cccccceEEEEeCcHH-HHHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcC
Confidence 5567777777765544 4444444555444 3599999999999999999999999999999999999999999999999
Q ss_pred CccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeCh-hhHHHHHHHHHHhhc
Q psy9399 319 RIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNH-AERMNIKKIERFTKQ 390 (453)
Q Consensus 319 ~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~-~~~~~~~~~~~~~~~ 390 (453)
+.+|||||+++++|+|+|++++||++|.|.+..+|+||+||+||.|+.|.+++|+++ .+......+.++++.
T Consensus 350 ~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~ 422 (434)
T 2db3_A 350 SMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEG 422 (434)
T ss_dssp SCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHH
T ss_pred CCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999984 466667777776643
No 2
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.6e-58 Score=450.01 Aligned_cols=364 Identities=34% Similarity=0.574 Sum_probs=331.2
Q ss_pred CCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhcccccc
Q psy9399 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNN 81 (453)
Q Consensus 2 ~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 81 (453)
+|+++++++.+.++|..+|+..|+++|+++++.+++++++++.+|||+|||++|++|++..+..
T Consensus 38 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~---------------- 101 (410)
T 2j0s_A 38 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI---------------- 101 (410)
T ss_dssp SGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT----------------
T ss_pred CHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhh----------------
Confidence 7999999999999999999999999999999999999999999999999999999999987653
Q ss_pred ccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHH
Q psy9399 82 NKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLID 161 (453)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~ 161 (453)
...+.++||++|+++|+.|+.+.+.+++.... +.+...+|+.....+...+..+++|+|+||+.|.+
T Consensus 102 ------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~ 168 (410)
T 2j0s_A 102 ------------QVRETQALILAPTRELAVQIQKGLLALGDYMN-VQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFD 168 (410)
T ss_dssp ------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTT-CCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHH
T ss_pred ------------ccCCceEEEEcCcHHHHHHHHHHHHHHhccCC-eEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHH
Confidence 22356899999999999999999999886655 88888999998888777777788999999999999
Q ss_pred HHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccccc
Q psy9399 162 HMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241 (453)
Q Consensus 162 ~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (453)
.+......+.++++||+||+|++.++++...+..++..++...|++++|||++..+..+...++.++..+..........
T Consensus 169 ~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (410)
T 2j0s_A 169 MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLE 248 (410)
T ss_dssp HHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCT
T ss_pred HHHhCCccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCC
Confidence 99888778899999999999999999999999999999999999999999999888777777888888777666555556
Q ss_pred cceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCcc
Q psy9399 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIK 321 (453)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 321 (453)
.+.+.+........+...+..++.....+++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+
T Consensus 249 ~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 328 (410)
T 2j0s_A 249 GIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASR 328 (410)
T ss_dssp TEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSC
T ss_pred CceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCC
Confidence 77777777777666777777888777778999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHHHhhcCCCc
Q psy9399 322 ILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394 (453)
Q Consensus 322 vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (453)
|||||+++++|+|+|++++||+++.|.+...|.||+||+||.|+.|.+++++++.+...++.++++++.+++.
T Consensus 329 vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 401 (410)
T 2j0s_A 329 VLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDE 401 (410)
T ss_dssp EEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEE
T ss_pred EEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCcee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999877643
No 3
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.4e-57 Score=443.22 Aligned_cols=378 Identities=38% Similarity=0.609 Sum_probs=317.3
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQN 80 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 80 (453)
++|+++++++.+.++|..+|+..|+++|.++++.+++++++++.||||+|||++|++|++..+.........
T Consensus 15 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~-------- 86 (417)
T 2i4i_A 15 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEAL-------- 86 (417)
T ss_dssp SSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHH--------
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchh--------
Confidence 479999999999999999999999999999999999999999999999999999999999887653211000
Q ss_pred cccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHH
Q psy9399 81 NNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~ 160 (453)
..............++++||++|+++|+.|+.+.+.++....+ +++..++|+.........+..+++|+|+||++|.
T Consensus 87 --~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~ 163 (417)
T 2i4i_A 87 --RAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSR-VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLV 163 (417)
T ss_dssp --HHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSS-CCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHH
T ss_pred --hccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCC-ceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHH
Confidence 0000000001122346899999999999999999999876554 8888999999988888888888999999999999
Q ss_pred HHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhh--CCC--CccEEEEEeecChHHHHHHHhhcCCCeEEEeccc
Q psy9399 161 DHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDA--TPV--TRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236 (453)
Q Consensus 161 ~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~--~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 236 (453)
..+..+...+.++++||+||+|++.+++|...+..+... .+. ..|++++|||++..+..+...++.++..+.....
T Consensus 164 ~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 243 (417)
T 2i4i_A 164 DMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRV 243 (417)
T ss_dssp HHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC--
T ss_pred HHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCC
Confidence 999888878899999999999999999999999988874 332 5789999999999888888888888887777665
Q ss_pred ccccccceEEEEEEcchhhHHHHHHHHHhhC-CCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHH
Q psy9399 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDK-RVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENL 315 (453)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 315 (453)
......+.+.+..... ..+...+..++... .++++||||++++.++.+++.|...++.+..+||+++..+|..+++.|
T Consensus 244 ~~~~~~i~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f 322 (417)
T 2i4i_A 244 GSTSENITQKVVWVEE-SDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQF 322 (417)
T ss_dssp --CCSSEEEEEEECCG-GGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred CCCccCceEEEEEecc-HhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHH
Confidence 5555666666666644 44555555555554 567999999999999999999999999999999999999999999999
Q ss_pred hcCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHHHhhc
Q psy9399 316 RRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQ 390 (453)
Q Consensus 316 ~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 390 (453)
++|+.+|||||+++++|+|+|++++||++++|.+..+|.||+||+||.|+.|.+++++++.+...++.+.+++..
T Consensus 323 ~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~ 397 (417)
T 2i4i_A 323 RSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVE 397 (417)
T ss_dssp HHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHH
T ss_pred HcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999888888887754
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=8.5e-57 Score=440.01 Aligned_cols=364 Identities=34% Similarity=0.570 Sum_probs=317.0
Q ss_pred CCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhcccccc
Q psy9399 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNN 81 (453)
Q Consensus 2 ~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 81 (453)
+|+++++++.+.+.|..+|+..|+++|+++++.+++++++++.+|||+|||++|++++++.+..
T Consensus 41 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~---------------- 104 (414)
T 3eiq_A 41 SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL---------------- 104 (414)
T ss_dssp CGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCT----------------
T ss_pred CHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhh----------------
Confidence 6899999999999999999999999999999999999999999999999999999999988765
Q ss_pred ccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhc-CCCCEEEeChHHHH
Q psy9399 82 NKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLS-RNPEILLATPGRLI 160 (453)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~T~~~l~ 160 (453)
...+.+++|++|+++|+.|+.+.+.+++.... ..+....|+........... ..++|+|+||++|.
T Consensus 105 ------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~ 171 (414)
T 3eiq_A 105 ------------DLKATQALVLAPTRELAQQIQKVVMALGDYMG-ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVF 171 (414)
T ss_dssp ------------TSCSCCEEEECSSHHHHHHHHHHHHHHGGGSC-CCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHH
T ss_pred ------------cCCceeEEEEeChHHHHHHHHHHHHHHhcccC-ceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHH
Confidence 22456899999999999999999999886655 77888888888776665555 67899999999999
Q ss_pred HHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEeccccccc
Q psy9399 161 DHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240 (453)
Q Consensus 161 ~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (453)
+.+......+.++++||+||+|++.++++...+..++..++...|++++|||++.........++.++..+.........
T Consensus 172 ~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (414)
T 3eiq_A 172 DMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTL 251 (414)
T ss_dssp HHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCT
T ss_pred HHHHcCCcccccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCC
Confidence 99988887888999999999999999999999999999999999999999999998888888888888887776666666
Q ss_pred ccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCc
Q psy9399 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRI 320 (453)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 320 (453)
..+.+.+........+...+..++.....+++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~ 331 (414)
T 3eiq_A 252 EGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSS 331 (414)
T ss_dssp TSCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC--
T ss_pred CCceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCC
Confidence 77777787777777788888888888888899999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHHHhhcCCCc
Q psy9399 321 KILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394 (453)
Q Consensus 321 ~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (453)
+|||||+++++|+|+|++++||+++.|.+..+|.||+||+||.|+.|.+++++++.+...++.++++++..+..
T Consensus 332 ~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (414)
T 3eiq_A 332 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEE 405 (414)
T ss_dssp -CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEE
T ss_pred cEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998876543
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=8.1e-56 Score=431.03 Aligned_cols=362 Identities=34% Similarity=0.573 Sum_probs=319.7
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQN 80 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 80 (453)
.+|+++++++.+.++|...|+..|+++|.++++.+++++++++.+|||+|||++|++|++..+..
T Consensus 21 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~--------------- 85 (400)
T 1s2m_A 21 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP--------------- 85 (400)
T ss_dssp CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT---------------
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhh---------------
Confidence 47999999999999999999999999999999999999999999999999999999999987654
Q ss_pred cccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHH
Q psy9399 81 NNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~ 160 (453)
...+.+++|++|+++|+.|+.+.+.++....+ +.+...+|+.............++|+|+||++|.
T Consensus 86 -------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~ 151 (400)
T 1s2m_A 86 -------------KLNKIQALIMVPTRELALQTSQVVRTLGKHCG-ISCMVTTGGTNLRDDILRLNETVHILVGTPGRVL 151 (400)
T ss_dssp -------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTT-CCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHH
T ss_pred -------------ccCCccEEEEcCCHHHHHHHHHHHHHHhcccC-ceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHH
Confidence 22355899999999999999999999876554 7888889998887777777778899999999999
Q ss_pred HHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEeccccccc
Q psy9399 161 DHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240 (453)
Q Consensus 161 ~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (453)
..+......+.++++||+||+|++.+.++...+..+...++...+++++|||++..+..........+..+..... ...
T Consensus 152 ~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 230 (400)
T 1s2m_A 152 DLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE-LTL 230 (400)
T ss_dssp HHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS-CBC
T ss_pred HHHHhCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc-ccc
Confidence 9888877778999999999999999888888889999888888999999999998888888877877765544332 222
Q ss_pred ccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCc
Q psy9399 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRI 320 (453)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 320 (453)
..+.+.+... ....+...+..++.....+++||||++++.++.+++.|...++.+..+||+++..+|..+++.|++|+.
T Consensus 231 ~~~~~~~~~~-~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 309 (400)
T 1s2m_A 231 KGITQYYAFV-EERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKV 309 (400)
T ss_dssp TTEEEEEEEC-CGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSS
T ss_pred CCceeEEEEe-chhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCC
Confidence 4444444444 445666777777777778899999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHHHhhcCCC
Q psy9399 321 KILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIP 393 (453)
Q Consensus 321 ~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (453)
+|||||+++++|+|+|++++||+++.|.+..+|.||+||+||.|+.|.+++++++.+...++.+++.++.+++
T Consensus 310 ~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~ 382 (400)
T 1s2m_A 310 RTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIA 382 (400)
T ss_dssp SEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCE
T ss_pred cEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999888876653
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.6e-55 Score=427.61 Aligned_cols=363 Identities=30% Similarity=0.525 Sum_probs=314.3
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQN 80 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 80 (453)
++|+++++++.+.++|..+|+..|+++|.++++.++.++++++.+|||+|||++|++|++..+..
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~--------------- 72 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP--------------- 72 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCC---------------
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcc---------------
Confidence 36999999999999999999999999999999999999999999999999999999999987654
Q ss_pred cccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhc-CCCCEEEeChHHH
Q psy9399 81 NNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLS-RNPEILLATPGRL 159 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~T~~~l 159 (453)
...+.++||++|+++|+.|+.+.+.++....+.+++..++|+.........+. ..++|+|+||+++
T Consensus 73 -------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l 139 (391)
T 1xti_A 73 -------------VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI 139 (391)
T ss_dssp -------------CTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHH
T ss_pred -------------cCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHH
Confidence 22456899999999999999999999987766689999999988766655544 3579999999999
Q ss_pred HHHHhcCCCCCCCccEEEEechhhhccc-CChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccc-
Q psy9399 160 IDHMNSGKINFSHLQILVLDEADRMLDM-GFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE- 237 (453)
Q Consensus 160 ~~~l~~~~~~~~~~~~iIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~- 237 (453)
...+......+.++++||+||+|++.++ ++...+..++...+...|++++|||+++........++.++..+......
T Consensus 140 ~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (391)
T 1xti_A 140 LALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETK 219 (391)
T ss_dssp HHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCC
T ss_pred HHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccc
Confidence 9998888777899999999999999874 67778888888888899999999999998888888888888777665432
Q ss_pred cccccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhc
Q psy9399 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRR 317 (453)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 317 (453)
.....+.+.+... ....+...+..++....++++||||++++.++.+++.|...++.+..+||+++..+|..+++.|++
T Consensus 220 ~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 298 (391)
T 1xti_A 220 LTLHGLQQYYVKL-KDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD 298 (391)
T ss_dssp CCCTTCEEEEEEC-CGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cCcccceEEEEEc-CchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhc
Confidence 2234455555444 445566666777777788899999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhh-HHHHHHHHHHhhcCC
Q psy9399 318 GRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAE-RMNIKKIERFTKQQI 392 (453)
Q Consensus 318 g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~-~~~~~~~~~~~~~~~ 392 (453)
|+.+|||||+++++|+|+|++++||+++.|++..+|.||+||+||.|+.|.+++++++.+ ...+..+++.++..+
T Consensus 299 ~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (391)
T 1xti_A 299 FQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNI 374 (391)
T ss_dssp TCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCC
T ss_pred CCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCCh
Confidence 999999999999999999999999999999999999999999999999999999998764 455677777665443
No 7
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=9.6e-56 Score=432.24 Aligned_cols=363 Identities=33% Similarity=0.527 Sum_probs=320.6
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISG--RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLN 78 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~ 78 (453)
.+|+++++++.+.++|.++|+..|+++|.++++.++++ +++++.||||+|||++|++|++..+..
T Consensus 25 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~------------- 91 (412)
T 3fht_A 25 KSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP------------- 91 (412)
T ss_dssp SCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCT-------------
T ss_pred CCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhh-------------
Confidence 47999999999999999999999999999999999987 889999999999999999999988765
Q ss_pred cccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHH
Q psy9399 79 QNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGR 158 (453)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~ 158 (453)
...++++||++|+++|+.|+.+.+.++....+.+.+....++...... ....++|+|+||++
T Consensus 92 ---------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~ 153 (412)
T 3fht_A 92 ---------------ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGT 153 (412)
T ss_dssp ---------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHH
T ss_pred ---------------cCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchH
Confidence 234568999999999999999999999877666888877777664322 13467999999999
Q ss_pred HHHHHhc-CCCCCCCccEEEEechhhhcc-cCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEeccc
Q psy9399 159 LIDHMNS-GKINFSHLQILVLDEADRMLD-MGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236 (453)
Q Consensus 159 l~~~l~~-~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 236 (453)
+.+.+.. +...+.++++||+||+|++.+ .++...+..+...++...|++++|||+++....+......++..+.....
T Consensus 154 l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 233 (412)
T 3fht_A 154 VLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE 233 (412)
T ss_dssp HHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGG
T ss_pred HHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccc
Confidence 9998865 556678999999999999987 67888888889999999999999999999998899889999988877776
Q ss_pred ccccccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHh
Q psy9399 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLR 316 (453)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 316 (453)
......+.+.+........+...+..++.....+++||||++++.++.+++.|...++.+..+||+|+..+|..+++.|+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 313 (412)
T 3fht_A 234 EETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFR 313 (412)
T ss_dssp GSSCTTEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHH
T ss_pred cccccCceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHH
Confidence 66667777777777777777788888888777789999999999999999999999999999999999999999999999
Q ss_pred cCCccEEEEeCCcccCCCCCCCcEEEEcCCC------CChhHHHHHhhhccCCCCCccEEEEeChhh-HHHHHHHHHHhh
Q psy9399 317 RGRIKILVATDVAARGIDVPAITHVFNYDLP------KFPEDYVHRIGRTGRAGRNGFAVSLVNHAE-RMNIKKIERFTK 389 (453)
Q Consensus 317 ~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~------~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~-~~~~~~~~~~~~ 389 (453)
+|+.+|||||+++++|+|+|++++||+++.| .+..+|+||+||+||.|+.|.++++++..+ ...++.++++++
T Consensus 314 ~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 393 (412)
T 3fht_A 314 EGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFN 393 (412)
T ss_dssp TTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHT
T ss_pred CCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHC
Confidence 9999999999999999999999999999999 467899999999999999999999998765 677888888887
Q ss_pred cCCCc
Q psy9399 390 QQIPI 394 (453)
Q Consensus 390 ~~~~~ 394 (453)
..+..
T Consensus 394 ~~~~~ 398 (412)
T 3fht_A 394 KKIER 398 (412)
T ss_dssp CCCEE
T ss_pred Ccccc
Confidence 66543
No 8
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=3.7e-55 Score=425.63 Aligned_cols=356 Identities=34% Similarity=0.573 Sum_probs=314.5
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISG--RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLN 78 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~ 78 (453)
.+|+++|+++.+.++|..+|+..|+++|.++++.++.+ +++++++|||+|||++|+++++..+..
T Consensus 5 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~------------- 71 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNP------------- 71 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCT-------------
T ss_pred cCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhcc-------------
Confidence 48999999999999999999999999999999999988 889999999999999999999987654
Q ss_pred cccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHH
Q psy9399 79 QNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGR 158 (453)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~ 158 (453)
...+.++||++|+++|+.|+.+.+.+++.... +.+....++..... ...+++|+|+||+.
T Consensus 72 ---------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~iiv~T~~~ 131 (395)
T 3pey_A 72 ---------------EDASPQAICLAPSRELARQTLEVVQEMGKFTK-ITSQLIVPDSFEKN----KQINAQVIVGTPGT 131 (395)
T ss_dssp ---------------TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC-CCEEEESTTSSCTT----SCBCCSEEEECHHH
T ss_pred ---------------CCCCccEEEECCCHHHHHHHHHHHHHHhcccC-eeEEEEecCchhhh----ccCCCCEEEEcHHH
Confidence 23456899999999999999999999876555 66666666544222 12367999999999
Q ss_pred HHHHHhcCCCCCCCccEEEEechhhhcc-cCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccc
Q psy9399 159 LIDHMNSGKINFSHLQILVLDEADRMLD-MGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237 (453)
Q Consensus 159 l~~~l~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (453)
+...+......+.++++||+||+|++.+ .++...+..+...++...|++++|||+++.+.........++..+......
T Consensus 132 l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (395)
T 3pey_A 132 VLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNE 211 (395)
T ss_dssp HHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGG
T ss_pred HHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccc
Confidence 9999988877889999999999999987 678888888889999999999999999999888888888888877776666
Q ss_pred cccccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhc
Q psy9399 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRR 317 (453)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 317 (453)
.....+.+.+........+...+..++.....+++||||++++.++.+++.|+..+..+..+||+++..+|..+++.|++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 291 (395)
T 3pey_A 212 VNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFRE 291 (395)
T ss_dssp CSCTTEEEEEEECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHT
T ss_pred cccccccEEEEEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHC
Confidence 66566777777777777788888888888888999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCcccCCCCCCCcEEEEcCCCC------ChhHHHHHhhhccCCCCCccEEEEeChhh-HHHHHHHHHHhh
Q psy9399 318 GRIKILVATDVAARGIDVPAITHVFNYDLPK------FPEDYVHRIGRTGRAGRNGFAVSLVNHAE-RMNIKKIERFTK 389 (453)
Q Consensus 318 g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~------~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~-~~~~~~~~~~~~ 389 (453)
|+.+|||||+++++|+|+|++++||+++.|. +..+|.||+||+||.|+.|.+++++++.+ ....+.++++++
T Consensus 292 g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 292 GRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp TSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred CCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999998 99999999999999999999999998754 455667777766
No 9
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.6e-54 Score=413.72 Aligned_cols=357 Identities=39% Similarity=0.638 Sum_probs=311.9
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhcccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISG-RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQ 79 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~-~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~ 79 (453)
++|+++++++.+.+.|.+.|+..|+++|.++++.++++ +++++.+|||+|||++++.+++..+...
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~------------- 72 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN------------- 72 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS-------------
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc-------------
Confidence 58999999999999999999999999999999999988 6899999999999999999998876531
Q ss_pred ccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHH
Q psy9399 80 NNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRL 159 (453)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l 159 (453)
.+.+++|++|+++|+.|+.+.+.++..... +.+...+|+........... .++|+|+||+.+
T Consensus 73 ----------------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l 134 (367)
T 1hv8_A 73 ----------------NGIEAIILTPTRELAIQVADEIESLKGNKN-LKIAKIYGGKAIYPQIKALK-NANIVVGTPGRI 134 (367)
T ss_dssp ----------------SSCCEEEECSCHHHHHHHHHHHHHHHCSSC-CCEEEECTTSCHHHHHHHHH-TCSEEEECHHHH
T ss_pred ----------------CCCcEEEEcCCHHHHHHHHHHHHHHhCCCC-ceEEEEECCcchHHHHhhcC-CCCEEEecHHHH
Confidence 355899999999999999999999876544 77888888888766655554 679999999999
Q ss_pred HHHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccc
Q psy9399 160 IDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239 (453)
Q Consensus 160 ~~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (453)
...+......+.+++++|+||+|.+.++++...+..++...+...+++++|||++.........+..++..+.....
T Consensus 135 ~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--- 211 (367)
T 1hv8_A 135 LDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKIN--- 211 (367)
T ss_dssp HHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSS---
T ss_pred HHHHHcCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCC---
Confidence 99998887778999999999999999999999999999999889999999999998888777777777665544321
Q ss_pred cccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCC
Q psy9399 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGR 319 (453)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 319 (453)
..+.+.+..... ..+...+..++. ..+.++||||++++.++.+++.|+..+..+..+||+++..+|..+++.|++|+
T Consensus 212 -~~~~~~~~~~~~-~~~~~~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 288 (367)
T 1hv8_A 212 -ANIEQSYVEVNE-NERFEALCRLLK-NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKK 288 (367)
T ss_dssp -SSSEEEEEECCG-GGHHHHHHHHHC-STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTS
T ss_pred -CCceEEEEEeCh-HHHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCC
Confidence 244455555433 444555555555 45579999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHHHhhcCCCc
Q psy9399 320 IKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394 (453)
Q Consensus 320 ~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (453)
.+|||||+++++|+|+|++++||+++.|.+..+|.||+||+||.|++|.+++++++.+...++.+++.++.+++.
T Consensus 289 ~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 363 (367)
T 1hv8_A 289 IRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKK 363 (367)
T ss_dssp SSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCC
T ss_pred CeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCce
Confidence 999999999999999999999999999999999999999999999999999999999999999999988877653
No 10
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.6e-56 Score=435.10 Aligned_cols=363 Identities=33% Similarity=0.577 Sum_probs=182.1
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQN 80 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 80 (453)
++|+++++++.+.+.|..+|+..|+++|+++++.+++++++++.+|||+|||++|++|++..+..
T Consensus 21 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~--------------- 85 (394)
T 1fuu_A 21 YKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT--------------- 85 (394)
T ss_dssp CSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCT---------------
T ss_pred CChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhc---------------
Confidence 47999999999999999999999999999999999999999999999999999999999987654
Q ss_pred cccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHH
Q psy9399 81 NNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~ 160 (453)
...++++||++|+++|+.|+.+.+.++....+ +.+..++|+.........+. +++|+|+||+.|.
T Consensus 86 -------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~ 150 (394)
T 1fuu_A 86 -------------SVKAPQALMLAPTRELALQIQKVVMALAFHMD-IKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVF 150 (394)
T ss_dssp -------------TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC-CCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHH
T ss_pred -------------cCCCCCEEEEcCCHHHHHHHHHHHHHHhccCC-eeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHH
Confidence 23466899999999999999999999876554 78888888888766554443 5799999999999
Q ss_pred HHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEeccccccc
Q psy9399 161 DHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240 (453)
Q Consensus 161 ~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (453)
..+......+.+++++|+||+|++.++++...+..+...++...|++++|||+++........+...+..+.........
T Consensus 151 ~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (394)
T 1fuu_A 151 DNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTL 230 (394)
T ss_dssp HHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----
T ss_pred HHHHhCCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccC
Confidence 99988877788999999999999999999999999999999999999999999998888888888888877766544444
Q ss_pred ccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCc
Q psy9399 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRI 320 (453)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 320 (453)
..+.+.+........+...+..++.....+++||||++++.++.+++.|+..++.+..+||+++..+|..+++.|++|+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 310 (394)
T 1fuu_A 231 EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 310 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCC
Confidence 45555555554444455666666666677899999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHHHhhcCCC
Q psy9399 321 KILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIP 393 (453)
Q Consensus 321 ~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (453)
+|||||+++++|+|+|++++||+++.|.+..+|.||+||+||.|++|.+++++++.+...++.++++++.+++
T Consensus 311 ~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 383 (394)
T 1fuu_A 311 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIE 383 (394)
T ss_dssp -------------------------------------------------------------------------
T ss_pred cEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCccc
Confidence 9999999999999999999999999999999999999999999999999999999988888888887776644
No 11
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=4.6e-56 Score=442.29 Aligned_cols=362 Identities=33% Similarity=0.530 Sum_probs=176.2
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISG--RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLN 78 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~ 78 (453)
.+|++++|++.+.+.|..+||..|+++|.++++.++.+ ++++++||||||||++|++|++..+..
T Consensus 92 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~------------- 158 (479)
T 3fmp_B 92 KSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP------------- 158 (479)
T ss_dssp CCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCT-------------
T ss_pred CCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhh-------------
Confidence 37999999999999999999999999999999999987 889999999999999999999987765
Q ss_pred cccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHH
Q psy9399 79 QNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGR 158 (453)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~ 158 (453)
...++++||++|+++|+.|+.+.+.++......+.+....++...... ....++|+|+||++
T Consensus 159 ---------------~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~ 220 (479)
T 3fmp_B 159 ---------------ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGT 220 (479)
T ss_dssp ---------------TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHH
T ss_pred ---------------cCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchH
Confidence 234558999999999999999999998877666777777776653322 13356899999999
Q ss_pred HHHHHhc-CCCCCCCccEEEEechhhhcc-cCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEeccc
Q psy9399 159 LIDHMNS-GKINFSHLQILVLDEADRMLD-MGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236 (453)
Q Consensus 159 l~~~l~~-~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 236 (453)
|.+++.. +...+.++++||+||+|++.+ .++...+..+...++...|++++|||++.....+...++.++..+.....
T Consensus 221 l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~ 300 (479)
T 3fmp_B 221 VLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE 300 (479)
T ss_dssp HHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC--
T ss_pred HHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEecccc
Confidence 9998865 456678999999999999987 57888888899999999999999999999998999889999888887766
Q ss_pred ccccccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHh
Q psy9399 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLR 316 (453)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 316 (453)
......+.+.+........+...+..++.....+++||||+++..++.+++.|...++.+..+||++++.+|..+++.|+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~ 380 (479)
T 3fmp_B 301 EETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFR 380 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCcCCceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHH
Confidence 55556666666666655666666777777667789999999999999999999999999999999999999999999999
Q ss_pred cCCccEEEEeCCcccCCCCCCCcEEEEcCCCC------ChhHHHHHhhhccCCCCCccEEEEeChhh-HHHHHHHHHHhh
Q psy9399 317 RGRIKILVATDVAARGIDVPAITHVFNYDLPK------FPEDYVHRIGRTGRAGRNGFAVSLVNHAE-RMNIKKIERFTK 389 (453)
Q Consensus 317 ~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~------~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~-~~~~~~~~~~~~ 389 (453)
+|+.+|||||+++++|+|+|++++||++|+|. +..+|.||+||+||.|+.|.++++++..+ ...++.++++++
T Consensus 381 ~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~ 460 (479)
T 3fmp_B 381 EGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFN 460 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhC
Confidence 99999999999999999999999999999994 56899999999999999999999998765 566677777766
Q ss_pred cCCC
Q psy9399 390 QQIP 393 (453)
Q Consensus 390 ~~~~ 393 (453)
..+.
T Consensus 461 ~~~~ 464 (479)
T 3fmp_B 461 KKIE 464 (479)
T ss_dssp ----
T ss_pred CCce
Confidence 5543
No 12
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.2e-53 Score=433.58 Aligned_cols=362 Identities=30% Similarity=0.501 Sum_probs=300.9
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHHHHHHHh--cCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccch
Q psy9399 8 LHELVLKALVKVGYTKPTGVQEQAIPAAI--SGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIY 85 (453)
Q Consensus 8 l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~--~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (453)
|++++.++|..+|+..|+++|.++++.++ .++++++.||||+|||++|++|++..+......
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~---------------- 91 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD---------------- 91 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS----------------
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccc----------------
Confidence 99999999999999999999999999999 678899999999999999999999988764211
Q ss_pred hhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhc---ccCCeeEEEEECCCchHHHHHHhc-CCCCEEEeChHHHHH
Q psy9399 86 THKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL---YMKKIKAISILGGMPYLRQMQLLS-RNPEILLATPGRLID 161 (453)
Q Consensus 86 ~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~T~~~l~~ 161 (453)
...+.++||++|+++|+.|+.+.+.++.. ....+.+..+.|+.........+. .+++|+|+||++|..
T Consensus 92 --------~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~ 163 (579)
T 3sqw_A 92 --------SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLID 163 (579)
T ss_dssp --------STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHH
T ss_pred --------ccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHH
Confidence 22356899999999999999999998753 223467888888888777665553 378999999999998
Q ss_pred HHhcC-CCCCCCccEEEEechhhhcccCChHHHHHHHhhCC-------CCccEEEEEeecChHHHHHHHhhcCCCeEEEe
Q psy9399 162 HMNSG-KINFSHLQILVLDEADRMLDMGFINDIEKIVDATP-------VTRQTMLFSATLDGIVGNMAENITKDPLILKV 233 (453)
Q Consensus 162 ~l~~~-~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~-------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 233 (453)
++... ...+..+++||+||||++++++|...+..+...++ ...|++++|||+++.+..+...++..+..+..
T Consensus 164 ~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~ 243 (579)
T 3sqw_A 164 VLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFL 243 (579)
T ss_dssp HHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEE
T ss_pred HHHhccccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEE
Confidence 88654 33578899999999999999999988888776543 36689999999999888888888888776655
Q ss_pred ccc----ccccccceEEEEEEcchhh-HHHHHHH----HHhhCCCCcEEEEeccchhHHHHHHHHhhC---CCceeecCC
Q psy9399 234 NSI----EKKQKNITQSILFVDDILH-KNRLLDY----LLRDKRVGQAVVFTATKRDADIIADRLNIS---GFLAAPLHG 301 (453)
Q Consensus 234 ~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~----l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~---~~~~~~~~~ 301 (453)
... ......+.+.......... ....+.. +.....+.++||||+++..++.+++.|... ++.+..+||
T Consensus 244 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg 323 (579)
T 3sqw_A 244 DTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHG 323 (579)
T ss_dssp ESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEEST
T ss_pred eecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecC
Confidence 432 2222345555555544322 2222222 222356689999999999999999999876 889999999
Q ss_pred CCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHH
Q psy9399 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNI 381 (453)
Q Consensus 302 ~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~ 381 (453)
+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.+...|+||+||+||.|+.|.+++++.+.+...+
T Consensus 324 ~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~ 403 (579)
T 3sqw_A 324 KITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFV 403 (579)
T ss_dssp TSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHH
T ss_pred CCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCC
Q psy9399 382 KKIERFTKQQIP 393 (453)
Q Consensus 382 ~~~~~~~~~~~~ 393 (453)
+.+++.....+.
T Consensus 404 ~~l~~~~~~~~~ 415 (579)
T 3sqw_A 404 RELEDAKNIVIA 415 (579)
T ss_dssp HHHHHHHCCCCC
T ss_pred HHHHHHhCCCcc
Confidence 998887665543
No 13
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=3.9e-53 Score=429.75 Aligned_cols=362 Identities=30% Similarity=0.506 Sum_probs=299.1
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHHHHHHHh--cCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccch
Q psy9399 8 LHELVLKALVKVGYTKPTGVQEQAIPAAI--SGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIY 85 (453)
Q Consensus 8 l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~--~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (453)
|++.+.++|..+|+..|+++|.++++.++ .+++++++||||+|||++|++|++..+......
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~---------------- 142 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD---------------- 142 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS----------------
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc----------------
Confidence 89999999999999999999999999999 567899999999999999999999988764311
Q ss_pred hhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcc---cCCeeEEEEECCCchHHHHHHh-cCCCCEEEeChHHHHH
Q psy9399 86 THKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLY---MKKIKAISILGGMPYLRQMQLL-SRNPEILLATPGRLID 161 (453)
Q Consensus 86 ~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ilv~T~~~l~~ 161 (453)
...+.++||++|+++|+.|+.+.+.++... .....+..+.|+.........+ ..+++|+|+||++|.+
T Consensus 143 --------~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~ 214 (563)
T 3i5x_A 143 --------SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLID 214 (563)
T ss_dssp --------STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHH
T ss_pred --------ccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHH
Confidence 223568999999999999999999987532 2346678888888877666555 3478999999999998
Q ss_pred HHhcC-CCCCCCccEEEEechhhhcccCChHHHHHHHhhCC-------CCccEEEEEeecChHHHHHHHhhcCCCeEEEe
Q psy9399 162 HMNSG-KINFSHLQILVLDEADRMLDMGFINDIEKIVDATP-------VTRQTMLFSATLDGIVGNMAENITKDPLILKV 233 (453)
Q Consensus 162 ~l~~~-~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~-------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 233 (453)
.+... ...++++++||+||||++.+++|...+..+...++ ...|++++|||+++.+..+...++..+..+..
T Consensus 215 ~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~ 294 (563)
T 3i5x_A 215 VLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFL 294 (563)
T ss_dssp HHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEE
T ss_pred HHHhccccccccceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEE
Confidence 87654 23578899999999999999999888888776542 36689999999999888888888888776655
Q ss_pred ccc----ccccccceEEEEEEcchhhH-HHHHH----HHHhhCCCCcEEEEeccchhHHHHHHHHhhC---CCceeecCC
Q psy9399 234 NSI----EKKQKNITQSILFVDDILHK-NRLLD----YLLRDKRVGQAVVFTATKRDADIIADRLNIS---GFLAAPLHG 301 (453)
Q Consensus 234 ~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~----~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~---~~~~~~~~~ 301 (453)
... ......+.+........... ...+. .+.....++++||||+++..++.+++.|... ++.+..+||
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~ 374 (563)
T 3i5x_A 295 DTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHG 374 (563)
T ss_dssp ESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEEST
T ss_pred eccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecC
Confidence 332 12223445555555443222 22222 2233356789999999999999999999876 889999999
Q ss_pred CCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHH
Q psy9399 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNI 381 (453)
Q Consensus 302 ~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~ 381 (453)
+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.+..+|+||+||+||.|+.|.+++++.+.+...+
T Consensus 375 ~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~ 454 (563)
T 3i5x_A 375 KITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFV 454 (563)
T ss_dssp TSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCC
Q psy9399 382 KKIERFTKQQIP 393 (453)
Q Consensus 382 ~~~~~~~~~~~~ 393 (453)
+.+++..+..+.
T Consensus 455 ~~l~~~~~~~~~ 466 (563)
T 3i5x_A 455 RELEDAKNIVIA 466 (563)
T ss_dssp HHHHHHHCCCCC
T ss_pred HHHHHHhCCCcc
Confidence 888887665443
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.1e-51 Score=392.35 Aligned_cols=335 Identities=36% Similarity=0.612 Sum_probs=285.9
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhh
Q psy9399 8 LHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTH 87 (453)
Q Consensus 8 l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (453)
|++.+.++|.++|+..|+++|.++++.+++++++++.+|||+|||++|+++++..
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------------------------- 55 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------------------------- 55 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-------------------------
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-------------------------
Confidence 5789999999999999999999999999999999999999999999999998764
Q ss_pred hhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCC
Q psy9399 88 KERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGK 167 (453)
Q Consensus 88 ~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~ 167 (453)
+.+++|++|+++|+.|+.+.+.+++...+ ..+..++|+.........+. .++|+|+||+.|.+.+....
T Consensus 56 ---------~~~~liv~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~ 124 (337)
T 2z0m_A 56 ---------GMKSLVVTPTRELTRQVASHIRDIGRYMD-TKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGV 124 (337)
T ss_dssp ---------TCCEEEECSSHHHHHHHHHHHHHHTTTSC-CCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTS
T ss_pred ---------cCCEEEEeCCHHHHHHHHHHHHHHhhhcC-CcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCC
Confidence 34799999999999999999999876554 78888888888776655554 48999999999999988877
Q ss_pred CCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccccccceEEE
Q psy9399 168 INFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSI 247 (453)
Q Consensus 168 ~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (453)
..+.++++||+||+|++.++++...+..++...+...+++++|||++.........+..++..+... .....+.+.+
T Consensus 125 ~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 201 (337)
T 2z0m_A 125 IDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKF 201 (337)
T ss_dssp CCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEE
T ss_pred cchhhCcEEEEEChHHhhccccHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEE
Confidence 7788999999999999999999999999999999889999999999998888888888777665433 2223444555
Q ss_pred EEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeC
Q psy9399 248 LFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATD 327 (453)
Q Consensus 248 ~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 327 (453)
........ ..+ ..+....++++||||++++.++.+++.|. .+..+||+++..+|.++++.|++|+.+|||||+
T Consensus 202 ~~~~~~~~--~~~-~~~~~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 274 (337)
T 2z0m_A 202 VHVKDDWR--SKV-QALRENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD 274 (337)
T ss_dssp EECSSSSH--HHH-HHHHTCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH
T ss_pred EEeChHHH--HHH-HHHHhCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC
Confidence 54433322 222 34455677899999999999999999887 478899999999999999999999999999999
Q ss_pred CcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHHHhh
Q psy9399 328 VAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTK 389 (453)
Q Consensus 328 ~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~ 389 (453)
++++|+|+|++++||++++|.+..+|.||+||+||.|++|.+++++. .+....+.+++.++
T Consensus 275 ~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 275 VASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp HHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred ccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999 77666666655543
No 15
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9e-53 Score=419.82 Aligned_cols=360 Identities=31% Similarity=0.474 Sum_probs=264.6
Q ss_pred CCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccc
Q psy9399 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISG--RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQN 80 (453)
Q Consensus 3 ~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 80 (453)
|...++++.+.+.+.+.|+..|+++|+++++.++++ +++++.||||+|||++|+++++..+..
T Consensus 121 ~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~--------------- 185 (508)
T 3fho_A 121 XXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDA--------------- 185 (508)
T ss_dssp ------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCT---------------
T ss_pred ccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHh---------------
Confidence 445677888999999999999999999999999988 889999999999999999999988765
Q ss_pred cccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHH
Q psy9399 81 NNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~ 160 (453)
...+.++||++|+++|+.|+.+.+.+++.... +......++.... .....++|+|+||+++.
T Consensus 186 -------------~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~Ivv~T~~~l~ 247 (508)
T 3fho_A 186 -------------SVPKPQAICLAPSRELARQIMDVVTEMGKYTE-VKTAFGIKDSVPK----GAKIDAQIVIGTPGTVM 247 (508)
T ss_dssp -------------TCCSCCEEEECSCHHHHHHHHHHHHHHSTTSS-CCEEC--------------CCCCSEEEECHHHHH
T ss_pred -------------CCCCceEEEEECcHHHHHHHHHHHHHhCCccC-eeEEEEeCCcccc----cccCCCCEEEECHHHHH
Confidence 23456899999999999999999999876544 4444444433321 12336899999999999
Q ss_pred HHHhcCCCCCCCccEEEEechhhhcc-cCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccc
Q psy9399 161 DHMNSGKINFSHLQILVLDEADRMLD-MGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239 (453)
Q Consensus 161 ~~l~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (453)
..+......+.++++||+||+|++.+ .++...+..+...++...|++++|||+++.+..+...+..++..+........
T Consensus 248 ~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~ 327 (508)
T 3fho_A 248 DLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELS 327 (508)
T ss_dssp HHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC--
T ss_pred HHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCC
Confidence 99988887889999999999999987 67888999999999999999999999999899988888888887766655555
Q ss_pred cccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCC
Q psy9399 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGR 319 (453)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 319 (453)
...+.+.+........+...+..++....++++||||+++++++.+++.|...+..+..+||+++..+|..+++.|++|+
T Consensus 328 ~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~ 407 (508)
T 3fho_A 328 VEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGT 407 (508)
T ss_dssp --CCCCEEEEC--CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSS
T ss_pred cccceEEEEECCchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCC
Confidence 55666666666666677777888888778889999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeCCcccCCCCCCCcEEEEcCCC------CChhHHHHHhhhccCCCCCccEEEEeCh-hhHHHHHHHHHHhhcCC
Q psy9399 320 IKILVATDVAARGIDVPAITHVFNYDLP------KFPEDYVHRIGRTGRAGRNGFAVSLVNH-AERMNIKKIERFTKQQI 392 (453)
Q Consensus 320 ~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~------~~~~~~~Q~~GR~~R~g~~g~~~~~~~~-~~~~~~~~~~~~~~~~~ 392 (453)
.+|||||+++++|+|+|++++||+++.| .+..+|.||+||+||.|+.|.+++++.+ .+...++.++++++.++
T Consensus 408 ~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i 487 (508)
T 3fho_A 408 SKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPI 487 (508)
T ss_dssp CCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCC
T ss_pred CeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCc
Confidence 9999999999999999999999999999 7899999999999999999999999985 45566788888877665
Q ss_pred Ccc
Q psy9399 393 PIE 395 (453)
Q Consensus 393 ~~~ 395 (453)
..-
T Consensus 488 ~~l 490 (508)
T 3fho_A 488 TRV 490 (508)
T ss_dssp C--
T ss_pred ccC
Confidence 543
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=4.5e-50 Score=403.94 Aligned_cols=338 Identities=17% Similarity=0.223 Sum_probs=267.3
Q ss_pred CCCCCCCHHHHHHHHh-CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhcccccc
Q psy9399 3 FKSIGLHELVLKALVK-VGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNN 81 (453)
Q Consensus 3 ~~~l~l~~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 81 (453)
++++++++.+.+.|.. +|+..|+++|+++++.+++++++++.+|||+|||++|++|++..
T Consensus 23 ~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~------------------- 83 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS------------------- 83 (591)
T ss_dssp CSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS-------------------
T ss_pred cccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc-------------------
Confidence 4568899999999998 79999999999999999999999999999999999999999752
Q ss_pred ccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHH------hcCCCCEEEeC
Q psy9399 82 NKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQL------LSRNPEILLAT 155 (453)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~Ilv~T 155 (453)
.+++||++|+++|+.|+.+.+..++ +.+..+.++......... ....++|+|+|
T Consensus 84 ---------------~g~~lVisP~~~L~~q~~~~l~~~g-----i~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~T 143 (591)
T 2v1x_A 84 ---------------DGFTLVICPLISLMEDQLMVLKQLG-----ISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVT 143 (591)
T ss_dssp ---------------SSEEEEECSCHHHHHHHHHHHHHHT-----CCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEEC
T ss_pred ---------------CCcEEEEeCHHHHHHHHHHHHHhcC-----CcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEC
Confidence 3489999999999999999999874 777888888776544322 24578999999
Q ss_pred hHHHH------HHHhcCCCCCCCccEEEEechhhhcccC--ChHHHHH---HHhhCCCCccEEEEEeecChHHHHHHHhh
Q psy9399 156 PGRLI------DHMNSGKINFSHLQILVLDEADRMLDMG--FINDIEK---IVDATPVTRQTMLFSATLDGIVGNMAENI 224 (453)
Q Consensus 156 ~~~l~------~~l~~~~~~~~~~~~iIiDE~h~~~~~~--~~~~~~~---~~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 224 (453)
|++|. +.+.. ...+.++++|||||||.+++++ |...+.. +.... ...+++++|||+++.+.......
T Consensus 144 pe~L~~~~~~~~~l~~-~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~-~~~~ii~lSAT~~~~v~~~i~~~ 221 (591)
T 2v1x_A 144 PEKIAKSKMFMSRLEK-AYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQF-PNASLIGLTATATNHVLTDAQKI 221 (591)
T ss_dssp HHHHHSCHHHHHHHHH-HHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHC-TTSEEEEEESSCCHHHHHHHHHH
T ss_pred hhHhhccHHHHHHHHh-hhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhC-CCCcEEEEecCCCHHHHHHHHHH
Confidence 99874 22222 2245789999999999999887 5444433 33333 45789999999998776655555
Q ss_pred cCCCeEEEecccccccccceEEEEEEcc-hhhHHHHHHHHHh-hCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCC
Q psy9399 225 TKDPLILKVNSIEKKQKNITQSILFVDD-ILHKNRLLDYLLR-DKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302 (453)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~-~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~ 302 (453)
+..+....... ....+++......... .......+..++. ...++++||||++++.++.+++.|...|+.+..+||+
T Consensus 222 l~~~~~~~~~~-~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~ 300 (591)
T 2v1x_A 222 LCIEKCFTFTA-SFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHAN 300 (591)
T ss_dssp TTCCSCEEEEC-CCCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred hCCCCcEEEec-CCCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCC
Confidence 54432222221 1122333333332221 1222333333443 3466899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHH
Q psy9399 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIK 382 (453)
Q Consensus 303 ~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~ 382 (453)
|++.+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.+...|.|++||+||.|++|.++++++..|.....
T Consensus 301 l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~ 380 (591)
T 2v1x_A 301 LEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRIS 380 (591)
T ss_dssp SCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887755443
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.6e-49 Score=396.20 Aligned_cols=336 Identities=24% Similarity=0.351 Sum_probs=268.0
Q ss_pred CCCCCCCCCHHHHHHHHh-CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhcccc
Q psy9399 1 MNFKSIGLHELVLKALVK-VGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQ 79 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~ 79 (453)
.+|++++|++.+.+.|.+ +|+..|+++|.++++.+++++++++.+|||+|||++|++|++..
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~----------------- 64 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL----------------- 64 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----------------
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-----------------
Confidence 479999999999999998 99999999999999999999999999999999999999998753
Q ss_pred ccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHH----HHhcCCCCEEEeC
Q psy9399 80 NNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQM----QLLSRNPEILLAT 155 (453)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Ilv~T 155 (453)
.+.+||++|+++|+.|+.+.+..++ +.+..+.++....... ......++|+++|
T Consensus 65 -----------------~g~~lvi~P~~aL~~q~~~~l~~~g-----i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~T 122 (523)
T 1oyw_A 65 -----------------NGLTVVVSPLISLMKDQVDQLQANG-----VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIA 122 (523)
T ss_dssp -----------------SSEEEEECSCHHHHHHHHHHHHHTT-----CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEEC
T ss_pred -----------------CCCEEEECChHHHHHHHHHHHHHcC-----CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEEC
Confidence 3479999999999999999998864 6777777776654432 2234568999999
Q ss_pred hHHHHHHHhcCCCCCCCccEEEEechhhhcccC--ChHHHH---HHHhhCCCCccEEEEEeecChHHHH-HHHhhc-CCC
Q psy9399 156 PGRLIDHMNSGKINFSHLQILVLDEADRMLDMG--FINDIE---KIVDATPVTRQTMLFSATLDGIVGN-MAENIT-KDP 228 (453)
Q Consensus 156 ~~~l~~~l~~~~~~~~~~~~iIiDE~h~~~~~~--~~~~~~---~~~~~~~~~~~~i~~SAT~~~~~~~-~~~~~~-~~~ 228 (453)
|++|........+...++++||+||+|.+.+++ |...+. .+....+ ..+++++|||+++.... +...+. .++
T Consensus 123 pe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~ 201 (523)
T 1oyw_A 123 PERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDP 201 (523)
T ss_dssp HHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCCSC
T ss_pred HHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCC-CCCEEEEeCCCCHHHHHHHHHHhCCCCC
Confidence 999853222222234789999999999999887 443333 3444454 46899999999876544 333332 344
Q ss_pred eEEEecccccccccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHH
Q psy9399 229 LILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNAR 308 (453)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r 308 (453)
.... ... ..+++...... ...+...+..++....++++||||++++.++.+++.|+..++.+..+||+|+.++|
T Consensus 202 ~~~~-~~~--~r~~l~~~v~~---~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R 275 (523)
T 1oyw_A 202 LIQI-SSF--DRPNIRYMLME---KFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVR 275 (523)
T ss_dssp EEEE-CCC--CCTTEEEEEEE---CSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHH
T ss_pred eEEe-CCC--CCCceEEEEEe---CCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHH
Confidence 3332 221 12333322222 23334445555555677899999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHH
Q psy9399 309 NRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIK 382 (453)
Q Consensus 309 ~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~ 382 (453)
..+++.|++|+.+|||||+++++|+|+|++++||+++.|.+...|.|++||+||.|.+|.+++++++.|....+
T Consensus 276 ~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~ 349 (523)
T 1oyw_A 276 ADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR 349 (523)
T ss_dssp HHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887765443
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.8e-48 Score=380.68 Aligned_cols=339 Identities=19% Similarity=0.219 Sum_probs=263.5
Q ss_pred HHHHHHHh-CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhh
Q psy9399 11 LVLKALVK-VGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKE 89 (453)
Q Consensus 11 ~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (453)
++.+.+++ +|+ +|+++|.++++.+++++++++.||||+|||++|+++++..+..
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~------------------------ 63 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK------------------------ 63 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTT------------------------
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcC------------------------
Confidence 45556665 577 7999999999999999999999999999999999998876532
Q ss_pred hcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCch---HHHHHHhcC-CCCEEEeChHHHHHHHhc
Q psy9399 90 RLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPY---LRQMQLLSR-NPEILLATPGRLIDHMNS 165 (453)
Q Consensus 90 ~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~Ilv~T~~~l~~~l~~ 165 (453)
++++||++|+++|+.|+.+.+.+++. .++++..++|+... ......+.. .++|+|+||++|.+.+..
T Consensus 64 -------~~~~lil~Pt~~L~~q~~~~~~~~~~--~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~ 134 (414)
T 3oiy_A 64 -------GKKSALVFPTVTLVKQTLERLQKLAD--EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK 134 (414)
T ss_dssp -------TCCEEEEESSHHHHHHHHHHHHHHCC--SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH
T ss_pred -------CCEEEEEECCHHHHHHHHHHHHHHcc--CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH
Confidence 56899999999999999999999876 35899999999887 334444444 489999999999887764
Q ss_pred CCCCCCCccEEEEechhhhcc-----------cCChHH-HHHHHhhCC-----------CCccEEEEEee-cChHHH-HH
Q psy9399 166 GKINFSHLQILVLDEADRMLD-----------MGFIND-IEKIVDATP-----------VTRQTMLFSAT-LDGIVG-NM 220 (453)
Q Consensus 166 ~~~~~~~~~~iIiDE~h~~~~-----------~~~~~~-~~~~~~~~~-----------~~~~~i~~SAT-~~~~~~-~~ 220 (453)
..+.++++||+||+|++.+ .+|... +..++..++ ...|++++||| .+..+. .+
T Consensus 135 --~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~ 212 (414)
T 3oiy_A 135 --LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLL 212 (414)
T ss_dssp --HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHH
T ss_pred --hccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHH
Confidence 4567899999999997654 566666 777777665 77899999999 443322 22
Q ss_pred HHhhcCCCeEEEecccccccccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCcee-ec
Q psy9399 221 AENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA-PL 299 (453)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~-~~ 299 (453)
...... +...........+.+.+...+ +...+..++.. .++++||||+++..++.+++.|+..++.+. .+
T Consensus 213 ~~~~~~----~~~~~~~~~~~~i~~~~~~~~----~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~ 283 (414)
T 3oiy_A 213 FRDLLN----FTVGRLVSVARNITHVRISSR----SKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETW 283 (414)
T ss_dssp HHHHHS----CCSSCCCCCCCSEEEEEESSC----CHHHHHHHHHH-HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESS
T ss_pred HHHhhc----cCcCccccccccchheeeccC----HHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHHHHcCCceehhh
Confidence 222222 111122222234444444332 22333444444 337999999999999999999999999998 99
Q ss_pred CCCCCHHHHHHHHHHHhcCCccEEEE----eCCcccCCCCCC-CcEEEEcCCC--CChhHHHHHhhhccCCC----CCcc
Q psy9399 300 HGDLHQNARNRTLENLRRGRIKILVA----TDVAARGIDVPA-ITHVFNYDLP--KFPEDYVHRIGRTGRAG----RNGF 368 (453)
Q Consensus 300 ~~~~~~~~r~~~~~~f~~g~~~vLv~----T~~~~~Gvdi~~-~~~Vi~~~~~--~~~~~~~Q~~GR~~R~g----~~g~ 368 (453)
||+ +|. ++.|++|+.+|||| |+++++|+|+|+ +++||+++.| .+..+|+||+||+||.| ..|.
T Consensus 284 h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~ 357 (414)
T 3oiy_A 284 SEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGV 357 (414)
T ss_dssp SCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEE
T ss_pred cCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceE
Confidence 985 344 99999999999999 999999999999 9999999999 99999999999999987 4789
Q ss_pred EEEEeChhhHHHHHHHHHHhh--cCCCccccCCCCc
Q psy9399 369 AVSLVNHAERMNIKKIERFTK--QQIPIEVINGFEP 402 (453)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 402 (453)
+++++ .+...+..++++++ .+++...++....
T Consensus 358 ~i~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 391 (414)
T 3oiy_A 358 SVIFE--EDEEIFESLKTRLLLIAEEEIIEEAEANW 391 (414)
T ss_dssp EEEEC--CCHHHHHHHHHHHHHHHCCCEEEGGGCCH
T ss_pred EEEEE--ccHHHHHHHHHHhcccccccccccccccH
Confidence 99988 55667778888887 7777766655444
No 19
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=7e-47 Score=393.29 Aligned_cols=334 Identities=20% Similarity=0.250 Sum_probs=265.5
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHH-HhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhcccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPA-AISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQ 79 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~ 79 (453)
++|++++|++.+.+.+...|+..|+++|.++++. +.++++++++||||||||+++.+++++.+...
T Consensus 1 ~~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~------------- 67 (720)
T 2zj8_A 1 MRVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ------------- 67 (720)
T ss_dssp CBGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-------------
T ss_pred CcHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------------
Confidence 5799999999999999999999999999999998 88899999999999999999999999877631
Q ss_pred ccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHH
Q psy9399 80 NNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRL 159 (453)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l 159 (453)
+.+++|++|+++|+.|+.+.++++... ++++..++|+...... ....++|+|+||+++
T Consensus 68 -----------------~~~~l~i~P~raLa~q~~~~~~~l~~~--g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l 125 (720)
T 2zj8_A 68 -----------------GGKAVYIVPLKALAEEKFQEFQDWEKI--GLRVAMATGDYDSKDE---WLGKYDIIIATAEKF 125 (720)
T ss_dssp -----------------CSEEEEECSSGGGHHHHHHHTGGGGGG--TCCEEEECSCSSCCCG---GGGGCSEEEECHHHH
T ss_pred -----------------CCEEEEEcCcHHHHHHHHHHHHHHHhc--CCEEEEecCCCCcccc---ccCCCCEEEECHHHH
Confidence 458999999999999999998755432 4788888887654332 123689999999999
Q ss_pred HHHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccc
Q psy9399 160 IDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239 (453)
Q Consensus 160 ~~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (453)
...+......++++++||+||+|.+.++++...+..++..++...|+|++|||+++ ...+..++.. + .+.....+
T Consensus 126 ~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~~l~~-~-~~~~~~rp-- 200 (720)
T 2zj8_A 126 DSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAEWLNA-E-LIVSDWRP-- 200 (720)
T ss_dssp HHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHHHTTE-E-EEECCCCS--
T ss_pred HHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHHHhCC-c-ccCCCCCC--
Confidence 99888776668899999999999999888888888888877778899999999976 3444444322 1 11111100
Q ss_pred cccceEEE-----EEEcc-----hhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhC-----------------
Q psy9399 240 QKNITQSI-----LFVDD-----ILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNIS----------------- 292 (453)
Q Consensus 240 ~~~~~~~~-----~~~~~-----~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~----------------- 292 (453)
..+...+ ..... .......+..++. .++++||||++++.++.+++.|...
T Consensus 201 -~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~ 277 (720)
T 2zj8_A 201 -VKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELA 277 (720)
T ss_dssp -SEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHH
T ss_pred -CcceEEEEeCCeeeccccchhhhhHHHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHH
Confidence 0011110 01111 1222333333333 4589999999999999999998752
Q ss_pred -C---------------CceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEE----cC----CCC
Q psy9399 293 -G---------------FLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFN----YD----LPK 348 (453)
Q Consensus 293 -~---------------~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~----~~----~~~ 348 (453)
+ ..+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||+ +| .|.
T Consensus 278 ~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~ 357 (720)
T 2zj8_A 278 DSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERI 357 (720)
T ss_dssp HTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEEC
T ss_pred HHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccC
Confidence 1 23889999999999999999999999999999999999999999999998 65 578
Q ss_pred ChhHHHHHhhhccCCCC--CccEEEEeChhh
Q psy9399 349 FPEDYVHRIGRTGRAGR--NGFAVSLVNHAE 377 (453)
Q Consensus 349 ~~~~~~Q~~GR~~R~g~--~g~~~~~~~~~~ 377 (453)
+..+|.||+|||||.|. .|.|++++.+.+
T Consensus 358 s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 358 PIIEVHQMLGRAGRPKYDEVGEGIIVSTSDD 388 (720)
T ss_dssp CHHHHHHHHTTBCCTTTCSEEEEEEECSSSC
T ss_pred CHHHHHHHHhhcCCCCCCCCceEEEEecCcc
Confidence 99999999999999984 588999988776
No 20
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=4.2e-46 Score=387.63 Aligned_cols=334 Identities=22% Similarity=0.236 Sum_probs=260.7
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHH-HhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhcccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPA-AISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQ 79 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~ 79 (453)
++|++++|++.+.+.+...||..|+++|.++++. +.++++++++||||||||+++.+++++.+..
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-------------- 73 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK-------------- 73 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH--------------
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH--------------
Confidence 5799999999999999999999999999999999 7788999999999999999999999987663
Q ss_pred ccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHH
Q psy9399 80 NNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRL 159 (453)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l 159 (453)
.+.+++|++|+++|+.|+.+.++.+... ++++...+|+...... . ...++|+|+||+++
T Consensus 74 ----------------~~~~il~i~P~r~La~q~~~~~~~~~~~--g~~v~~~~G~~~~~~~--~-~~~~~Iiv~Tpe~l 132 (715)
T 2va8_A 74 ----------------NGGKAIYVTPLRALTNEKYLTFKDWELI--GFKVAMTSGDYDTDDA--W-LKNYDIIITTYEKL 132 (715)
T ss_dssp ----------------SCSEEEEECSCHHHHHHHHHHHGGGGGG--TCCEEECCSCSSSCCG--G-GGGCSEEEECHHHH
T ss_pred ----------------CCCeEEEEeCcHHHHHHHHHHHHHhhcC--CCEEEEEeCCCCCchh--h-cCCCCEEEEcHHHH
Confidence 1459999999999999999998655432 3788888887654332 1 23689999999999
Q ss_pred HHHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccc
Q psy9399 160 IDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239 (453)
Q Consensus 160 ~~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (453)
...+......++++++||+||+|.+.+..+...+..++..++ ..|+|++|||+++ ...+..++.. +. +.....+
T Consensus 133 ~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~~l~~-~~-~~~~~r~-- 206 (715)
T 2va8_A 133 DSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAKWLGA-EP-VATNWRP-- 206 (715)
T ss_dssp HHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHHHHTC-EE-EECCCCS--
T ss_pred HHHHhCChhHhhccCEEEEechhhcCCcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHHHhCC-Cc-cCCCCCC--
Confidence 998888766688999999999999988888888888777665 6799999999976 3445554432 11 1111100
Q ss_pred cccceEE-----------EEEEcc--------hhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCC-------
Q psy9399 240 QKNITQS-----------ILFVDD--------ILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISG------- 293 (453)
Q Consensus 240 ~~~~~~~-----------~~~~~~--------~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~------- 293 (453)
..+... .....+ .......+...+ ..++++||||++++.++.+++.|....
T Consensus 207 -~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~ 283 (715)
T 2va8_A 207 -VPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSL--SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDE 283 (715)
T ss_dssp -SCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCH
T ss_pred -CCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHH--hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCCh
Confidence 001100 011111 123333333333 355899999999999999999997632
Q ss_pred -----------------------------CceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEE-
Q psy9399 294 -----------------------------FLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFN- 343 (453)
Q Consensus 294 -----------------------------~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~- 343 (453)
..+..+||+++..+|..+++.|++|+++|||||+++++|+|+|++++||+
T Consensus 284 ~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~ 363 (715)
T 2va8_A 284 NALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGD 363 (715)
T ss_dssp HHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECC
T ss_pred HHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeC
Confidence 24889999999999999999999999999999999999999999999998
Q ss_pred ---cC-------CCCChhHHHHHhhhccCCCC--CccEEEEeChhhH
Q psy9399 344 ---YD-------LPKFPEDYVHRIGRTGRAGR--NGFAVSLVNHAER 378 (453)
Q Consensus 344 ---~~-------~~~~~~~~~Q~~GR~~R~g~--~g~~~~~~~~~~~ 378 (453)
++ .|.+..+|.||+|||||.|. .|.|++++++.+.
T Consensus 364 ~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 364 IYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp C--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGG
T ss_pred CeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchH
Confidence 88 78999999999999999884 5899999887664
No 21
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1e-46 Score=390.91 Aligned_cols=333 Identities=21% Similarity=0.261 Sum_probs=260.7
Q ss_pred CCCCCCC--CCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccc
Q psy9399 1 MNFKSIG--LHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLN 78 (453)
Q Consensus 1 ~~~~~l~--l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~ 78 (453)
++|++++ |++.+.+.+..+||..|+++|.++++.+.++++++++||||||||+++.+++++.+..
T Consensus 1 m~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~------------- 67 (702)
T 2p6r_A 1 MKVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK------------- 67 (702)
T ss_dssp CCSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT-------------
T ss_pred CchhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh-------------
Confidence 5899999 9999999999999999999999999999999999999999999999999999987654
Q ss_pred cccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHH
Q psy9399 79 QNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGR 158 (453)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~ 158 (453)
+.+++|++|+++|+.|+.+.++++... ++++..++|+...... ....++|+|+||++
T Consensus 68 ------------------~~~~l~i~P~r~La~q~~~~~~~~~~~--g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~ 124 (702)
T 2p6r_A 68 ------------------GGKSLYVVPLRALAGEKYESFKKWEKI--GLRIGISTGDYESRDE---HLGDCDIIVTTSEK 124 (702)
T ss_dssp ------------------TCCEEEEESSHHHHHHHHHHHTTTTTT--TCCEEEECSSCBCCSS---CSTTCSEEEEEHHH
T ss_pred ------------------CCcEEEEeCcHHHHHHHHHHHHHHHhc--CCEEEEEeCCCCcchh---hccCCCEEEECHHH
Confidence 458999999999999999998655432 4788888887654332 12368999999999
Q ss_pred HHHHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhC---CCCccEEEEEeecChHHHHHHHhhcCCCeEEEecc
Q psy9399 159 LIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDAT---PVTRQTMLFSATLDGIVGNMAENITKDPLILKVNS 235 (453)
Q Consensus 159 l~~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~---~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 235 (453)
+...+......++++++||+||+|.+.++++...+..++..+ ....|+|++|||+++ ...+..++ ..+. +....
T Consensus 125 l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~l-~~~~-~~~~~ 201 (702)
T 2p6r_A 125 ADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEWL-DADY-YVSDW 201 (702)
T ss_dssp HHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHHT-TCEE-EECCC
T ss_pred HHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHHh-CCCc-ccCCC
Confidence 999888876668899999999999999888777777666554 567899999999986 35555543 3221 21111
Q ss_pred cccccccceEE------EEEEcch------hhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhC-----------
Q psy9399 236 IEKKQKNITQS------ILFVDDI------LHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNIS----------- 292 (453)
Q Consensus 236 ~~~~~~~~~~~------~~~~~~~------~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~----------- 292 (453)
.+. .+... ....+.. ......+...+. .++++||||++++.++.+++.|...
T Consensus 202 r~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~ 276 (702)
T 2p6r_A 202 RPV---PLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLE 276 (702)
T ss_dssp CSS---CEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHH
T ss_pred CCc---cceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHH
Confidence 110 11110 0111110 013444444443 4579999999999999999988742
Q ss_pred -------------------CCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEE----cC---C
Q psy9399 293 -------------------GFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFN----YD---L 346 (453)
Q Consensus 293 -------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~----~~---~ 346 (453)
+..+..+||++++++|..+++.|++|+++|||||+++++|+|+|++++||+ || .
T Consensus 277 ~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~ 356 (702)
T 2p6r_A 277 KAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSK 356 (702)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEE
T ss_pred HHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCC
Confidence 135788999999999999999999999999999999999999999999998 55 6
Q ss_pred CCChhHHHHHhhhccCCCC--CccEEEEeChhh
Q psy9399 347 PKFPEDYVHRIGRTGRAGR--NGFAVSLVNHAE 377 (453)
Q Consensus 347 ~~~~~~~~Q~~GR~~R~g~--~g~~~~~~~~~~ 377 (453)
|.+..+|.||+|||||.|. .|.|++++++.+
T Consensus 357 ~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 357 RIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD 389 (702)
T ss_dssp ECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGG
T ss_pred cCCHHHHHHHhhhcCCCCCCCCceEEEEecCcc
Confidence 8899999999999999984 589999998876
No 22
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-45 Score=391.90 Aligned_cols=330 Identities=19% Similarity=0.227 Sum_probs=257.1
Q ss_pred CCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhcccccc
Q psy9399 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNN 81 (453)
Q Consensus 2 ~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 81 (453)
+|+.+++++.+...+...+...|+++|.++++.+.++++++++||||||||++|++|++..+..
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~---------------- 226 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---------------- 226 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT----------------
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc----------------
Confidence 4666677776666666666668999999999999999999999999999999999999988754
Q ss_pred ccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHH
Q psy9399 82 NKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLID 161 (453)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~ 161 (453)
+.+++|++|+++|+.|+++.+.++.. .+..++|+.. ....++|+|+||++|.+
T Consensus 227 ---------------g~rvlvl~PtraLa~Q~~~~l~~~~~-----~VglltGd~~-------~~~~~~IlV~Tpe~L~~ 279 (1108)
T 3l9o_A 227 ---------------KQRVIYTSPIKALSNQKYRELLAEFG-----DVGLMTGDIT-------INPDAGCLVMTTEILRS 279 (1108)
T ss_dssp ---------------TCEEEEEESSHHHHHHHHHHHHHHTS-----SEEEECSSCB-------CCCSCSEEEEEHHHHHH
T ss_pred ---------------CCeEEEEcCcHHHHHHHHHHHHHHhC-----CccEEeCccc-------cCCCCCEEEeChHHHHH
Confidence 55999999999999999999998763 4566777765 23468999999999999
Q ss_pred HHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChH--HHHHHHhhcCCCeEEEecccccc
Q psy9399 162 HMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGI--VGNMAENITKDPLILKVNSIEKK 239 (453)
Q Consensus 162 ~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 239 (453)
.+......+.++++|||||+|++.++++...+..++..++...|++++|||+++. +..+.......+..+.......
T Consensus 280 ~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp- 358 (1108)
T 3l9o_A 280 MLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP- 358 (1108)
T ss_dssp HHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCS-
T ss_pred HHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc-
Confidence 9988877788999999999999999999999999999999999999999998764 3344444455544433322111
Q ss_pred cccceEEEE---------EEcch---------------------------------------------hhHHHHHHHHHh
Q psy9399 240 QKNITQSIL---------FVDDI---------------------------------------------LHKNRLLDYLLR 265 (453)
Q Consensus 240 ~~~~~~~~~---------~~~~~---------------------------------------------~~~~~~~~~l~~ 265 (453)
..+...++ .++.. ......+...+.
T Consensus 359 -~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~ 437 (1108)
T 3l9o_A 359 -TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIW 437 (1108)
T ss_dssp -SCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHH
T ss_pred -ccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHH
Confidence 11111111 00000 111111222233
Q ss_pred hCCCCcEEEEeccchhHHHHHHHHhhCCCc---------------------------------------eeecCCCCCHH
Q psy9399 266 DKRVGQAVVFTATKRDADIIADRLNISGFL---------------------------------------AAPLHGDLHQN 306 (453)
Q Consensus 266 ~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~---------------------------------------~~~~~~~~~~~ 306 (453)
....+++||||+++..|+.++..|...++. +..+||+|++.
T Consensus 438 ~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~ 517 (1108)
T 3l9o_A 438 KKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPI 517 (1108)
T ss_dssp HTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHH
T ss_pred hcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHH
Confidence 345679999999999999999998653222 78899999999
Q ss_pred HHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCC--------CChhHHHHHhhhccCCC--CCccEEEEeChh
Q psy9399 307 ARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLP--------KFPEDYVHRIGRTGRAG--RNGFAVSLVNHA 376 (453)
Q Consensus 307 ~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~--------~~~~~~~Q~~GR~~R~g--~~g~~~~~~~~~ 376 (453)
+|..+++.|++|.++|||||+++++|+|+|++++||+++.+ .+..+|+||+||+||.| ..|.+++++++.
T Consensus 518 ~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 518 LKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp HHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred HHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 99999999999999999999999999999999999976653 46778999999999999 568888888775
No 23
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1.8e-44 Score=366.14 Aligned_cols=330 Identities=17% Similarity=0.220 Sum_probs=197.5
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCce
Q psy9399 20 GYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPR 99 (453)
Q Consensus 20 ~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (453)
+..+|+++|.++++.+++++++++++|||+|||++|++|++..+.... ...+.+
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~--------------------------~~~~~~ 57 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP--------------------------AGRKAK 57 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC--------------------------SSCCCC
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc--------------------------ccCCCe
Confidence 345799999999999999999999999999999999999998877532 122568
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCC-CCCCccEEEE
Q psy9399 100 MLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKI-NFSHLQILVL 178 (453)
Q Consensus 100 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~-~~~~~~~iIi 178 (453)
+||++|+++|+.||.+.+.++....+ +.+..++|+.........+..+++|+|+||++|.+.+..+.. .+.++++||+
T Consensus 58 ~lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vVi 136 (556)
T 4a2p_A 58 VVFLATKVPVYEQQKNVFKHHFERQG-YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIF 136 (556)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHGGGT-CCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHhcccC-ceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEE
Confidence 99999999999999999999876554 888889998876666556656789999999999999988776 7899999999
Q ss_pred echhhhcccCChHHHH-HHHhh----CCCCccEEEEEeecCh-----------HHHHHHHhhcCCCeEEEeccc----cc
Q psy9399 179 DEADRMLDMGFINDIE-KIVDA----TPVTRQTMLFSATLDG-----------IVGNMAENITKDPLILKVNSI----EK 238 (453)
Q Consensus 179 DE~h~~~~~~~~~~~~-~~~~~----~~~~~~~i~~SAT~~~-----------~~~~~~~~~~~~~~~~~~~~~----~~ 238 (453)
||+|++.+++....+. ..+.. .....+++++|||++. .+..+...+.. ......... ..
T Consensus 137 DEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~~~~~~~~ 215 (556)
T 4a2p_A 137 DECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDI-QAISTVRENIQELQR 215 (556)
T ss_dssp ETGGGCSTTSHHHHHHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTC-SEEECCCTTHHHHHH
T ss_pred ECCcccCCcchHHHHHHHHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCC-eEecchhcchHHHHh
Confidence 9999998876433332 22221 1345789999999942 11111121111 110000000 00
Q ss_pred ccccceEEEEEEc-------------------------------------------------------------------
Q psy9399 239 KQKNITQSILFVD------------------------------------------------------------------- 251 (453)
Q Consensus 239 ~~~~~~~~~~~~~------------------------------------------------------------------- 251 (453)
.............
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (556)
T 4a2p_A 216 FMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEES 295 (556)
T ss_dssp HTCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHH
T ss_pred cCCCCceEEEEcCCCcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhH
Confidence 0000000000000
Q ss_pred -------------------------------------------------------------------------chhhHHH
Q psy9399 252 -------------------------------------------------------------------------DILHKNR 258 (453)
Q Consensus 252 -------------------------------------------------------------------------~~~~~~~ 258 (453)
....+..
T Consensus 296 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~ 375 (556)
T 4a2p_A 296 RICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLE 375 (556)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHH
Confidence 0011222
Q ss_pred HHHHHHhh----CCCCcEEEEeccchhHHHHHHHHhhC------------CCceeecCCCCCHHHHHHHHHHHhc-CCcc
Q psy9399 259 LLDYLLRD----KRVGQAVVFTATKRDADIIADRLNIS------------GFLAAPLHGDLHQNARNRTLENLRR-GRIK 321 (453)
Q Consensus 259 ~~~~l~~~----~~~~~~lvf~~~~~~~~~l~~~L~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~ 321 (453)
.+..++.. ..+.++||||+++..++.+++.|... |.....+||+|+..+|..+++.|++ |+++
T Consensus 376 ~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~ 455 (556)
T 4a2p_A 376 ELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR 455 (556)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CC
T ss_pred HHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceE
Confidence 22223322 56789999999999999999999875 4455566788999999999999999 9999
Q ss_pred EEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHH
Q psy9399 322 ILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERM 379 (453)
Q Consensus 322 vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 379 (453)
|||||+++++|+|+|++++||++|+|+++..|+||+|| ||. ++|.+++++...+..
T Consensus 456 vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 456 LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp EEEEEC-----------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHH
T ss_pred EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 99999999999999999999999999999999999999 998 889999999886643
No 24
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=2.1e-44 Score=374.81 Aligned_cols=340 Identities=19% Similarity=0.238 Sum_probs=216.1
Q ss_pred HHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcc
Q psy9399 13 LKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLR 92 (453)
Q Consensus 13 ~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (453)
.+++..+|+..|+++|.++++.++.++++++++|||+|||++|++|++..+....
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~------------------------- 57 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP------------------------- 57 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC-------------------------
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc-------------------------
Confidence 4567889999999999999999999999999999999999999999998776522
Q ss_pred cCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCC-CCC
Q psy9399 93 FKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKI-NFS 171 (453)
Q Consensus 93 ~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~-~~~ 171 (453)
...++++||++|+++|+.|+.+.+.++....+ +.+..++|+.........+..+++|+|+||++|.+.+..+.. .+.
T Consensus 58 -~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~-~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~ 135 (696)
T 2ykg_A 58 -QGQKGKVVFFANQIPVYEQNKSVFSKYFERHG-YRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLS 135 (696)
T ss_dssp -TTCCCCEEEECSSHHHHHHHHHHHHHHTTTTT-CCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGG
T ss_pred -cCCCCeEEEEECCHHHHHHHHHHHHHHhccCC-ceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccc
Confidence 11236899999999999999999999875443 888889988765444444445789999999999999988766 688
Q ss_pred CccEEEEechhhhcccCChH-HHHHHHhh-----CCCCccEEEEEeecC--------hHHHHHHHhh-------------
Q psy9399 172 HLQILVLDEADRMLDMGFIN-DIEKIVDA-----TPVTRQTMLFSATLD--------GIVGNMAENI------------- 224 (453)
Q Consensus 172 ~~~~iIiDE~h~~~~~~~~~-~~~~~~~~-----~~~~~~~i~~SAT~~--------~~~~~~~~~~------------- 224 (453)
++++|||||||++.+..... .+...+.. .+...+++++|||+. .....+....
T Consensus 136 ~~~~vViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 215 (696)
T 2ykg_A 136 IFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKH 215 (696)
T ss_dssp GCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCT
T ss_pred cccEEEEeCCCcccCcccHHHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeeccc
Confidence 99999999999988655222 22222222 245678999999996 1222222111
Q ss_pred --------cCCCeEEEeccccccc--------------------------------------------------------
Q psy9399 225 --------TKDPLILKVNSIEKKQ-------------------------------------------------------- 240 (453)
Q Consensus 225 --------~~~~~~~~~~~~~~~~-------------------------------------------------------- 240 (453)
...|............
T Consensus 216 ~~~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (696)
T 2ykg_A 216 NLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQ 295 (696)
T ss_dssp THHHHHHHSCCCEEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC--
T ss_pred chHHHHhhcCCCceeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhh
Confidence 1111111000000000
Q ss_pred -------------------------------------------------------ccceEEEEE---------------E
Q psy9399 241 -------------------------------------------------------KNITQSILF---------------V 250 (453)
Q Consensus 241 -------------------------------------------------------~~~~~~~~~---------------~ 250 (453)
..+.+.+.. .
T Consensus 296 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 375 (696)
T 2ykg_A 296 MPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDP 375 (696)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCG
T ss_pred cccchhhhHHHHHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCC
Confidence 000000000 0
Q ss_pred cchhhHHHHHHHHHhh----CCCCcEEEEeccchhHHHHHHHHhhCC----Cceeec--------CCCCCHHHHHHHHHH
Q psy9399 251 DDILHKNRLLDYLLRD----KRVGQAVVFTATKRDADIIADRLNISG----FLAAPL--------HGDLHQNARNRTLEN 314 (453)
Q Consensus 251 ~~~~~~~~~~~~l~~~----~~~~~~lvf~~~~~~~~~l~~~L~~~~----~~~~~~--------~~~~~~~~r~~~~~~ 314 (453)
.....+...+..++.. ..++++||||+++..++.+++.|+..+ +.+..+ ||+|+..+|..+++.
T Consensus 376 ~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~ 455 (696)
T 2ykg_A 376 SNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDA 455 (696)
T ss_dssp GGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC------------------------
T ss_pred CCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHH
Confidence 0012233334444443 256799999999999999999999887 788888 559999999999999
Q ss_pred Hhc-CCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHH
Q psy9399 315 LRR-GRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNI 381 (453)
Q Consensus 315 f~~-g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~ 381 (453)
|++ |+.+|||||+++++|+|+|++++||++|+|.+..+|+||+|| ||. +.|.++++++..+....
T Consensus 456 F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~ 521 (696)
T 2ykg_A 456 FKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEK 521 (696)
T ss_dssp -----CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHH
T ss_pred HHhcCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHH
Confidence 998 999999999999999999999999999999999999999999 998 77999999987765433
No 25
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-43 Score=371.09 Aligned_cols=314 Identities=20% Similarity=0.244 Sum_probs=248.1
Q ss_pred HhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCC
Q psy9399 17 VKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPA 96 (453)
Q Consensus 17 ~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (453)
..++|. |+++|.++++.+.++++++++||||+|||++|.++++..+..
T Consensus 81 ~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~------------------------------- 128 (1010)
T 2xgj_A 81 RTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN------------------------------- 128 (1010)
T ss_dssp CCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT-------------------------------
T ss_pred HhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc-------------------------------
Confidence 346774 999999999999999999999999999999999998887654
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEE
Q psy9399 97 QPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176 (453)
Q Consensus 97 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~i 176 (453)
+.+++|++|+++|+.|+++.+.++.. .+..++|+.... ..++|+|+||+.|.+.+.++...+.++++|
T Consensus 129 g~rvL~l~PtkaLa~Q~~~~l~~~~~-----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lV 196 (1010)
T 2xgj_A 129 KQRVIYTSPIKALSNQKYRELLAEFG-----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWV 196 (1010)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHHHHS-----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEE
T ss_pred CCeEEEECChHHHHHHHHHHHHHHhC-----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEE
Confidence 45999999999999999999998763 566677766532 357999999999999888877778999999
Q ss_pred EEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHH--HHHHhhcCCCeEEEecccccccccceEEEEE-----
Q psy9399 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVG--NMAENITKDPLILKVNSIEKKQKNITQSILF----- 249 (453)
Q Consensus 177 IiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 249 (453)
||||+|.+.+++++..+..++..++...+++++|||+++... .+.......+..+....... ..+.+.+..
T Consensus 197 ViDEaH~l~d~~rg~~~e~il~~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp--~pl~~~~~~~~~~~ 274 (1010)
T 2xgj_A 197 IFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP--TPLQHYLFPAHGDG 274 (1010)
T ss_dssp EEETGGGGGCTTTHHHHHHHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCS--SCEEEEEEETTSSC
T ss_pred EEechhhhcccchhHHHHHHHHhcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc--ccceEEEEecCCcc
Confidence 999999999999999999999999999999999999986432 22222234344333222111 112111111
Q ss_pred ----Ecch---------------------------------------------hhHHHHHHHHHhhCCCCcEEEEeccch
Q psy9399 250 ----VDDI---------------------------------------------LHKNRLLDYLLRDKRVGQAVVFTATKR 280 (453)
Q Consensus 250 ----~~~~---------------------------------------------~~~~~~~~~l~~~~~~~~~lvf~~~~~ 280 (453)
.+.. ......+...+......++||||+++.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~ 354 (1010)
T 2xgj_A 275 IYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKR 354 (1010)
T ss_dssp CEEEECTTCCBCHHHHHHHHHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHH
T ss_pred eeeeeccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHH
Confidence 0000 000111222223344568999999999
Q ss_pred hHHHHHHHHhhCCCc---------------------------------------eeecCCCCCHHHHHHHHHHHhcCCcc
Q psy9399 281 DADIIADRLNISGFL---------------------------------------AAPLHGDLHQNARNRTLENLRRGRIK 321 (453)
Q Consensus 281 ~~~~l~~~L~~~~~~---------------------------------------~~~~~~~~~~~~r~~~~~~f~~g~~~ 321 (453)
.|+.+++.|...++. +..+||+|++.+|..+++.|++|.++
T Consensus 355 ~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ik 434 (1010)
T 2xgj_A 355 DCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK 434 (1010)
T ss_dssp HHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCc
Confidence 999999999764432 78899999999999999999999999
Q ss_pred EEEEeCCcccCCCCCCCcEEEE----cCC----CCChhHHHHHhhhccCCCCC--ccEEEEeChh
Q psy9399 322 ILVATDVAARGIDVPAITHVFN----YDL----PKFPEDYVHRIGRTGRAGRN--GFAVSLVNHA 376 (453)
Q Consensus 322 vLv~T~~~~~Gvdi~~~~~Vi~----~~~----~~~~~~~~Q~~GR~~R~g~~--g~~~~~~~~~ 376 (453)
|||||+++++|+|+|++++||+ +|. |.++.+|.||+||+||.|.+ |.+++++++.
T Consensus 435 VLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 435 VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp EEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred EEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 9999999999999999999999 898 88999999999999999975 9999999865
No 26
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=4.7e-44 Score=362.97 Aligned_cols=332 Identities=21% Similarity=0.246 Sum_probs=225.2
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEE
Q psy9399 23 KPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLV 102 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 102 (453)
.|+++|.++++.+++++++++++|||+|||++|++|++..+.... ...+.++||
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~--------------------------~~~~~~~li 57 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP--------------------------CGQKGKVVF 57 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC--------------------------SSCCCCEEE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc--------------------------cCCCCEEEE
Confidence 699999999999999999999999999999999999998877632 122568999
Q ss_pred EcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCC-CCCCccEEEEech
Q psy9399 103 LTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKI-NFSHLQILVLDEA 181 (453)
Q Consensus 103 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~-~~~~~~~iIiDE~ 181 (453)
++|+++|+.||.+.+.++....+ +.+..++|+.........+..+++|+|+||++|...+..+.. .+.++++||+|||
T Consensus 58 l~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEa 136 (555)
T 3tbk_A 58 FANQIPVYEQQATVFSRYFERLG-YNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDEC 136 (555)
T ss_dssp ECSSHHHHHHHHHHHHHHHHTTT-CCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTG
T ss_pred EeCCHHHHHHHHHHHHHHhccCC-cEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECc
Confidence 99999999999999999876554 888999999876655555556789999999999999988776 6889999999999
Q ss_pred hhhcccCCh-HHHHHHHhh-C----CCCccEEEEEeecChH-----------HHHHHHhhcCCCeEEEecc----ccccc
Q psy9399 182 DRMLDMGFI-NDIEKIVDA-T----PVTRQTMLFSATLDGI-----------VGNMAENITKDPLILKVNS----IEKKQ 240 (453)
Q Consensus 182 h~~~~~~~~-~~~~~~~~~-~----~~~~~~i~~SAT~~~~-----------~~~~~~~~~~~~~~~~~~~----~~~~~ 240 (453)
|++.+.+.. ..+...+.. . ....+++++|||+... +..+... +.......... .....
T Consensus 137 h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~~~~~~~~l~~~~ 215 (555)
T 3tbk_A 137 HNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAA-LDASVIATVRDNVAELEQVV 215 (555)
T ss_dssp GGCSTTCHHHHHHHHHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHH-TTCSEEECCCSCHHHHHTTC
T ss_pred cccCCcchHHHHHHHHHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHh-cCCeeeeccccCHHHHHhhc
Confidence 999876532 222233322 1 2446899999999531 1111111 11111111000 00000
Q ss_pred ccceEEEEEEc---------------------------------------------------------------------
Q psy9399 241 KNITQSILFVD--------------------------------------------------------------------- 251 (453)
Q Consensus 241 ~~~~~~~~~~~--------------------------------------------------------------------- 251 (453)
...........
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (555)
T 3tbk_A 216 YKPQKISRKVASRTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESR 295 (555)
T ss_dssp CCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHH
T ss_pred CCCceEEEEecCcccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHH
Confidence 00000000000
Q ss_pred ------------------------------------------------------------------------chhhHHHH
Q psy9399 252 ------------------------------------------------------------------------DILHKNRL 259 (453)
Q Consensus 252 ------------------------------------------------------------------------~~~~~~~~ 259 (453)
....+...
T Consensus 296 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 375 (555)
T 3tbk_A 296 VCKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRD 375 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHH
Confidence 00112222
Q ss_pred HHHHHh----hCCCCcEEEEeccchhHHHHHHHHhhCC----C--------ceeecCCCCCHHHHHHHHHHHhc-CCccE
Q psy9399 260 LDYLLR----DKRVGQAVVFTATKRDADIIADRLNISG----F--------LAAPLHGDLHQNARNRTLENLRR-GRIKI 322 (453)
Q Consensus 260 ~~~l~~----~~~~~~~lvf~~~~~~~~~l~~~L~~~~----~--------~~~~~~~~~~~~~r~~~~~~f~~-g~~~v 322 (453)
+..++. ...++++||||+++..++.+++.|...+ + ....+||+|++.+|..+++.|++ |+++|
T Consensus 376 l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~v 455 (555)
T 3tbk_A 376 LYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNI 455 (555)
T ss_dssp HHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSE
T ss_pred HHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeE
Confidence 222222 2456899999999999999999998753 2 34445669999999999999999 99999
Q ss_pred EEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHH
Q psy9399 323 LVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKI 384 (453)
Q Consensus 323 Lv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~ 384 (453)
||||+++++|+|+|++++||++|+|+++..|+||+|| ||. +.|.+++++++.+......+
T Consensus 456 LvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 456 LIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp EEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred EEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 9999999999999999999999999999999999999 998 88999999988776554444
No 27
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.6e-43 Score=371.42 Aligned_cols=332 Identities=17% Similarity=0.213 Sum_probs=205.2
Q ss_pred hCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCC
Q psy9399 18 KVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ 97 (453)
Q Consensus 18 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (453)
.+|+..|+++|.++++.+++++++++++|||+|||++|++|++..+.... ...+
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~--------------------------~~~~ 296 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP--------------------------AGRK 296 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC--------------------------SSCC
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc--------------------------ccCC
Confidence 35788999999999999999999999999999999999999998877632 1225
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCC-CCCCccEE
Q psy9399 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKI-NFSHLQIL 176 (453)
Q Consensus 98 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~-~~~~~~~i 176 (453)
.++||++|+++|+.|+.+.+.++....+ +.+..++|+.........+..+++|+|+||++|.+.+..+.. .+.++++|
T Consensus 297 ~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~-~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~i 375 (797)
T 4a2q_A 297 AKVVFLATKVPVYEQQKNVFKHHFERQG-YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLM 375 (797)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHGGGT-CCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHhcccCC-ceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEE
Confidence 6899999999999999999999876554 889999999876666666666889999999999999988776 68899999
Q ss_pred EEechhhhcccCChHHH-HHHHhh----CCCCccEEEEEeecCh-----------HHHHHHHhhcCCCeEEEecc----c
Q psy9399 177 VLDEADRMLDMGFINDI-EKIVDA----TPVTRQTMLFSATLDG-----------IVGNMAENITKDPLILKVNS----I 236 (453)
Q Consensus 177 IiDE~h~~~~~~~~~~~-~~~~~~----~~~~~~~i~~SAT~~~-----------~~~~~~~~~~~~~~~~~~~~----~ 236 (453)
|+||||++.+.+....+ ..+... .....+++++|||+.. .+..+...+.. ........ .
T Consensus 376 ViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~-~~i~~~~~~~~~l 454 (797)
T 4a2q_A 376 IFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDI-QAISTVRENIQEL 454 (797)
T ss_dssp EETTGGGCSTTSHHHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTC-SEEECCCTTHHHH
T ss_pred EEECccccCCCccHHHHHHHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCC-cEEecccccHHHH
Confidence 99999998876533332 222222 1445789999999942 22222211111 11000000 0
Q ss_pred ccccccceEEEEEEc----------------------------------------c------------------------
Q psy9399 237 EKKQKNITQSILFVD----------------------------------------D------------------------ 252 (453)
Q Consensus 237 ~~~~~~~~~~~~~~~----------------------------------------~------------------------ 252 (453)
............... .
T Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (797)
T 4a2q_A 455 QRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEE 534 (797)
T ss_dssp HHHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHH
T ss_pred HHhcCCCceEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccch
Confidence 000000000000000 0
Q ss_pred ----------------------------------------------------------------------------hhhH
Q psy9399 253 ----------------------------------------------------------------------------ILHK 256 (453)
Q Consensus 253 ----------------------------------------------------------------------------~~~~ 256 (453)
...+
T Consensus 535 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K 614 (797)
T 4a2q_A 535 ESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPK 614 (797)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChH
Confidence 0112
Q ss_pred HHHHHHHHh----hCCCCcEEEEeccchhHHHHHHHHhhC------------CCceeecCCCCCHHHHHHHHHHHhc-CC
Q psy9399 257 NRLLDYLLR----DKRVGQAVVFTATKRDADIIADRLNIS------------GFLAAPLHGDLHQNARNRTLENLRR-GR 319 (453)
Q Consensus 257 ~~~~~~l~~----~~~~~~~lvf~~~~~~~~~l~~~L~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g~ 319 (453)
...+..++. ...+.++||||+++..++.+++.|+.. |..+..+||+|+..+|..+++.|++ |+
T Consensus 615 ~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~ 694 (797)
T 4a2q_A 615 LEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKD 694 (797)
T ss_dssp HHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------C
T ss_pred HHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCC
Confidence 222222332 256689999999999999999999763 4456667899999999999999999 99
Q ss_pred ccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHH
Q psy9399 320 IKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERM 379 (453)
Q Consensus 320 ~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 379 (453)
++|||||+++++|+|+|++++||++|+|+++..|+||+|| ||. ++|.+++++...+..
T Consensus 695 ~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 695 NRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp CSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred ceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 9999999999999999999999999999999999999999 998 889999999876543
No 28
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=1.6e-43 Score=377.73 Aligned_cols=328 Identities=19% Similarity=0.241 Sum_probs=252.5
Q ss_pred hCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCC
Q psy9399 18 KVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ 97 (453)
Q Consensus 18 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (453)
.+|+ .|+++|+++++.++++++++++||||||||++++.+++..+.. +
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~-------------------------------~ 121 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK-------------------------------G 121 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTT-------------------------------T
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhc-------------------------------C
Confidence 3788 6999999999999999999999999999999888888776533 5
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCch---HHHHHHhcCC-CCEEEeChHHHHHHHhcCCCCCCCc
Q psy9399 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPY---LRQMQLLSRN-PEILLATPGRLIDHMNSGKINFSHL 173 (453)
Q Consensus 98 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~Ilv~T~~~l~~~l~~~~~~~~~~ 173 (453)
.++||++||++|+.|+.+.+..++ ...+++..++|+... ......+..+ ++|+|+||++|.+++.. ..+.++
T Consensus 122 ~~~Lil~PtreLa~Q~~~~l~~l~--~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l 197 (1104)
T 4ddu_A 122 KKSALVFPTVTLVKQTLERLQKLA--DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRF 197 (1104)
T ss_dssp CCEEEEESSHHHHHHHHHHHHTTS--CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCC
T ss_pred CeEEEEechHHHHHHHHHHHHHhh--CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCc
Confidence 689999999999999999999976 334899999999887 5555555554 89999999999887764 457889
Q ss_pred cEEEEechhhhcc-----------cCChHH-HHHHHhhCC-----------CCccEEEEEeec-ChHHH-HHHHhhcCCC
Q psy9399 174 QILVLDEADRMLD-----------MGFIND-IEKIVDATP-----------VTRQTMLFSATL-DGIVG-NMAENITKDP 228 (453)
Q Consensus 174 ~~iIiDE~h~~~~-----------~~~~~~-~~~~~~~~~-----------~~~~~i~~SAT~-~~~~~-~~~~~~~~~~ 228 (453)
++||+||+|++.. ++|... +..++..++ ...|++++|||+ +..+. .+......
T Consensus 198 ~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~-- 275 (1104)
T 4ddu_A 198 DFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-- 275 (1104)
T ss_dssp SEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC--
T ss_pred CEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee--
Confidence 9999999987654 677777 778887766 778999999994 43332 22222222
Q ss_pred eEEEecccccccccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCcee-ecCCCCCHHH
Q psy9399 229 LILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA-PLHGDLHQNA 307 (453)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~ 307 (453)
+..........++.+.+...+ +...+..++.. .++++||||++++.++.+++.|+..|+.+. .+||+
T Consensus 276 --i~v~~~~~~~~~i~~~~~~~~----k~~~L~~ll~~-~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~----- 343 (1104)
T 4ddu_A 276 --FTVGRLVSVARNITHVRISSR----SKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----- 343 (1104)
T ss_dssp --CCCCBCCCCCCCEEEEEESCC----CHHHHHHHHHH-HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----
T ss_pred --EEeccCCCCcCCceeEEEecC----HHHHHHHHHHh-cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----
Confidence 222222233345555554442 22333444444 238999999999999999999999999998 99993
Q ss_pred HHHHHHHHhcCCccEEEE----eCCcccCCCCCC-CcEEEEcCCCC----------------------------------
Q psy9399 308 RNRTLENLRRGRIKILVA----TDVAARGIDVPA-ITHVFNYDLPK---------------------------------- 348 (453)
Q Consensus 308 r~~~~~~f~~g~~~vLv~----T~~~~~Gvdi~~-~~~Vi~~~~~~---------------------------------- 348 (453)
|.+ ++.|++|+.+|||| |+++++|+|+|+ +++||++|+|.
T Consensus 344 rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 422 (1104)
T 4ddu_A 344 EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVE 422 (1104)
T ss_dssp HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHH
T ss_pred HHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555 99999999999999 999999999999 99999999998
Q ss_pred --------------------------------------ChhHHHHHhhhccCCCCC----ccEEEEeChhhHHHHHHHHH
Q psy9399 349 --------------------------------------FPEDYVHRIGRTGRAGRN----GFAVSLVNHAERMNIKKIER 386 (453)
Q Consensus 349 --------------------------------------~~~~~~Q~~GR~~R~g~~----g~~~~~~~~~~~~~~~~~~~ 386 (453)
+..+|+||+||+||.|.. |.+++++ .|...+..+++
T Consensus 423 ~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~--~d~~~~~~l~~ 500 (1104)
T 4ddu_A 423 ELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKT 500 (1104)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--CCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE--ecHHHHHHHHH
Confidence 778999999999997543 4556665 55556666665
Q ss_pred Hhh--cCCCccccC
Q psy9399 387 FTK--QQIPIEVIN 398 (453)
Q Consensus 387 ~~~--~~~~~~~~~ 398 (453)
.++ .+++...++
T Consensus 501 ~~~~~~~~~~~~~~ 514 (1104)
T 4ddu_A 501 RLLLIAEEEIIEEA 514 (1104)
T ss_dssp HHHHHTCCCEEEGG
T ss_pred HHhhhccccccccc
Confidence 554 444443333
No 29
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.7e-42 Score=344.35 Aligned_cols=322 Identities=23% Similarity=0.301 Sum_probs=244.4
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEE
Q psy9399 23 KPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLV 102 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 102 (453)
.|+++|.++++.++.+ ++++.+|||+|||++++.++...+.. .+.++||
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~------------------------------~~~~~li 57 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK------------------------------YGGKVLM 57 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH------------------------------SCSCEEE
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc------------------------------CCCeEEE
Confidence 6999999999999998 99999999999999999998887652 2458999
Q ss_pred EcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEechh
Q psy9399 103 LTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182 (453)
Q Consensus 103 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h 182 (453)
++|+++|+.||.+++.++... +...+..++|+......... ...++|+|+||+.|...+..+...+.++++||+||+|
T Consensus 58 v~P~~~L~~q~~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~-~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH 135 (494)
T 1wp9_A 58 LAPTKPLVLQHAESFRRLFNL-PPEKIVALTGEKSPEERSKA-WARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAH 135 (494)
T ss_dssp ECSSHHHHHHHHHHHHHHBCS-CGGGEEEECSCSCHHHHHHH-HHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGG
T ss_pred EECCHHHHHHHHHHHHHHhCc-chhheEEeeCCcchhhhhhh-ccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCc
Confidence 999999999999999998632 22578888888776554333 2357999999999999988877778999999999999
Q ss_pred hhcccCChHHHHHHHhhCCCCccEEEEEeecChH---HHHHHHhhcCCCeEEEecccc---cccccceEEEEEEc-----
Q psy9399 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGI---VGNMAENITKDPLILKVNSIE---KKQKNITQSILFVD----- 251 (453)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~----- 251 (453)
++.+......+...+.......+++++|||+... +..+...+............. ..............
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (494)
T 1wp9_A 136 RAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIY 215 (494)
T ss_dssp GCSTTCHHHHHHHHHHHHCSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHH
T ss_pred ccCCCCcHHHHHHHHHhcCCCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHH
Confidence 9986654455555555556677899999999743 333333322221111110000 00000000000000
Q ss_pred --------------------------------------------------------------------------------
Q psy9399 252 -------------------------------------------------------------------------------- 251 (453)
Q Consensus 252 -------------------------------------------------------------------------------- 251 (453)
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (494)
T 1wp9_A 216 KEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLS 295 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHH
Confidence
Q ss_pred --------------------------------------------chhhHHHHHHHHHhh----CCCCcEEEEeccchhHH
Q psy9399 252 --------------------------------------------DILHKNRLLDYLLRD----KRVGQAVVFTATKRDAD 283 (453)
Q Consensus 252 --------------------------------------------~~~~~~~~~~~l~~~----~~~~~~lvf~~~~~~~~ 283 (453)
....+...+..++.. ..++++||||+++..++
T Consensus 296 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~ 375 (494)
T 1wp9_A 296 ALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAK 375 (494)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHH
T ss_pred HHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHH
Confidence 111122333333333 56789999999999999
Q ss_pred HHHHHHhhCCCceeecCC--------CCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHH
Q psy9399 284 IIADRLNISGFLAAPLHG--------DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVH 355 (453)
Q Consensus 284 ~l~~~L~~~~~~~~~~~~--------~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q 355 (453)
.+++.|...++.+..+|| +++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|+++..|.|
T Consensus 376 ~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Q 455 (494)
T 1wp9_A 376 KIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQ 455 (494)
T ss_dssp HHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHH
T ss_pred HHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHH
Confidence 999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCCCCccEEEEeChhhH
Q psy9399 356 RIGRTGRAGRNGFAVSLVNHAER 378 (453)
Q Consensus 356 ~~GR~~R~g~~g~~~~~~~~~~~ 378 (453)
|+||+||.|+ |.++.++...+.
T Consensus 456 r~GR~~R~g~-g~~~~l~~~~t~ 477 (494)
T 1wp9_A 456 RRGRTGRHMP-GRVIILMAKGTR 477 (494)
T ss_dssp HHTTSCSCCC-SEEEEEEETTSH
T ss_pred HHhhccCCCC-ceEEEEEecCCH
Confidence 9999999998 999999887653
No 30
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.6e-42 Score=367.55 Aligned_cols=331 Identities=17% Similarity=0.208 Sum_probs=202.8
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCc
Q psy9399 19 VGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP 98 (453)
Q Consensus 19 ~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
.|+..|+++|.++++.+++++++++++|||+|||++|++|++..+.... ...+.
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~--------------------------~~~~~ 297 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP--------------------------AGRKA 297 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC--------------------------SSCCC
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc--------------------------ccCCC
Confidence 4677899999999999999999999999999999999999998776521 12256
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCC-CCCCccEEE
Q psy9399 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKI-NFSHLQILV 177 (453)
Q Consensus 99 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~-~~~~~~~iI 177 (453)
++||++|+++|+.|+.+.+.++..... +.+..++|+.........+..+++|+|+||++|.+.+..... .+.++++||
T Consensus 298 ~vLvl~Pt~~L~~Q~~~~~~~~~~~~~-~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liV 376 (936)
T 4a2w_A 298 KVVFLATKVPVYEQQKNVFKHHFERQG-YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMI 376 (936)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHTTT-CCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhcccC-ceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEE
Confidence 899999999999999999999876543 888999998866554444555689999999999999988766 678899999
Q ss_pred EechhhhcccCChHH-HHHHHhh----CCCCccEEEEEeecCh-----------HHHHHHHhh-----------------
Q psy9399 178 LDEADRMLDMGFIND-IEKIVDA----TPVTRQTMLFSATLDG-----------IVGNMAENI----------------- 224 (453)
Q Consensus 178 iDE~h~~~~~~~~~~-~~~~~~~----~~~~~~~i~~SAT~~~-----------~~~~~~~~~----------------- 224 (453)
+||||++...+.... +..+... .....+++++|||+.. .+..+...+
T Consensus 377 iDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~ 456 (936)
T 4a2w_A 377 FDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQR 456 (936)
T ss_dssp EETGGGCSTTCHHHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHH
T ss_pred EECccccCCCccHHHHHHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHH
Confidence 999999887653222 2233322 1445789999999941 111221111
Q ss_pred -cCCCeEEEeccccccccc--------------c----------e-EEEEEEcc--------------------------
Q psy9399 225 -TKDPLILKVNSIEKKQKN--------------I----------T-QSILFVDD-------------------------- 252 (453)
Q Consensus 225 -~~~~~~~~~~~~~~~~~~--------------~----------~-~~~~~~~~-------------------------- 252 (453)
...+.............. . . ........
T Consensus 457 ~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~ 536 (936)
T 4a2w_A 457 FMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEES 536 (936)
T ss_dssp HSCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHH
T ss_pred hccCCcceEEecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhh
Confidence 111111110000000000 0 0 00000000
Q ss_pred --------------------------------------------------------------------------hhhHHH
Q psy9399 253 --------------------------------------------------------------------------ILHKNR 258 (453)
Q Consensus 253 --------------------------------------------------------------------------~~~~~~ 258 (453)
...+..
T Consensus 537 ~~~~~l~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~ 616 (936)
T 4a2w_A 537 RICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLE 616 (936)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 011122
Q ss_pred HHHHHHhh----CCCCcEEEEeccchhHHHHHHHHhhC------------CCceeecCCCCCHHHHHHHHHHHhc-CCcc
Q psy9399 259 LLDYLLRD----KRVGQAVVFTATKRDADIIADRLNIS------------GFLAAPLHGDLHQNARNRTLENLRR-GRIK 321 (453)
Q Consensus 259 ~~~~l~~~----~~~~~~lvf~~~~~~~~~l~~~L~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~ 321 (453)
.+..++.. ..++++||||+++..++.+++.|... |.....+||+|+..+|..+++.|++ |+++
T Consensus 617 ~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~ 696 (936)
T 4a2w_A 617 ELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR 696 (936)
T ss_dssp HHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCS
T ss_pred HHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCee
Confidence 22223332 45689999999999999999999875 4455666889999999999999999 9999
Q ss_pred EEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhH
Q psy9399 322 ILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAER 378 (453)
Q Consensus 322 vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 378 (453)
|||||+++++|+|+|++++||++|+|+++..|+||+|| ||. ..|.++++++..+.
T Consensus 697 VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 697 LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp EEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred EEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 99999999999999999999999999999999999999 998 77999999887544
No 31
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=3.2e-43 Score=375.67 Aligned_cols=324 Identities=19% Similarity=0.246 Sum_probs=248.0
Q ss_pred HHHHh-CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcc
Q psy9399 14 KALVK-VGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLR 92 (453)
Q Consensus 14 ~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (453)
+.+.+ +||. | ++|.++++.++++++++++||||||||+ |++|++..+..
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~--------------------------- 97 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL--------------------------- 97 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT---------------------------
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh---------------------------
Confidence 44444 8998 9 9999999999999999999999999998 88888876654
Q ss_pred cCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCe----eEEEEECCCchHHH---HHHhcCCCCEEEeChHHHHHHHhc
Q psy9399 93 FKPAQPRMLVLTPTRELALQVTAATERYGLYMKKI----KAISILGGMPYLRQ---MQLLSRNPEILLATPGRLIDHMNS 165 (453)
Q Consensus 93 ~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~Ilv~T~~~l~~~l~~ 165 (453)
.++++||++||++|+.|+.+.+.+++...+ + .+..++|+.....+ ...+.. ++|+|+||++|.+++..
T Consensus 98 ---~~~~~lil~PtreLa~Q~~~~l~~l~~~~~-i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~ 172 (1054)
T 1gku_B 98 ---KGKRCYVIFPTSLLVIQAAETIRKYAEKAG-VGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE 172 (1054)
T ss_dssp ---TSCCEEEEESCHHHHHHHHHHHHHHHTTTC-CSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT
T ss_pred ---cCCeEEEEeccHHHHHHHHHHHHHHHhhcC-CCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH
Confidence 256899999999999999999999886654 5 78889998887663 333444 89999999999987764
Q ss_pred CCCCCCCccEEEEechhhhcccCChHHHHHHHhhC-----------CCCccEEEEEeecChHHHHHHHhhcCCCeEEEec
Q psy9399 166 GKINFSHLQILVLDEADRMLDMGFINDIEKIVDAT-----------PVTRQTMLFSATLDGIVGNMAENITKDPLILKVN 234 (453)
Q Consensus 166 ~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~-----------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 234 (453)
+.++++||+||+|++++ +...+..++..+ +...|++++|||++.. ..+...+..++..+...
T Consensus 173 ----L~~l~~lViDEah~~l~--~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~ 245 (1054)
T 1gku_B 173 ----LGHFDFIFVDDVDAILK--ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIG 245 (1054)
T ss_dssp ----SCCCSEEEESCHHHHHT--STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCS
T ss_pred ----hccCCEEEEeChhhhhh--ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEcc
Confidence 66899999999999998 456777777665 3456899999998865 32222222222222222
Q ss_pred ccccccccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHH
Q psy9399 235 SIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLEN 314 (453)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~ 314 (453)
........+.+.+.. ..+...+..++... ++++||||++++.++.+++.|+.. +.+..+||++ ..+++.
T Consensus 246 ~~~~~~~~i~~~~~~----~~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~ 314 (1054)
T 1gku_B 246 SSRITVRNVEDVAVN----DESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEK 314 (1054)
T ss_dssp CCEECCCCEEEEEES----CCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHH
T ss_pred CcccCcCCceEEEec----hhHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHH
Confidence 222222344444441 22333444555544 478999999999999999999988 9999999997 478899
Q ss_pred HhcCCccEEEE----eCCcccCCCCCCC-cEEEEcCCC------------------------------------------
Q psy9399 315 LRRGRIKILVA----TDVAARGIDVPAI-THVFNYDLP------------------------------------------ 347 (453)
Q Consensus 315 f~~g~~~vLv~----T~~~~~Gvdi~~~-~~Vi~~~~~------------------------------------------ 347 (453)
|++|+.+|||| |+++++|+|+|+| ++||+++.|
T Consensus 315 F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (1054)
T 1gku_B 315 FVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHID 394 (1054)
T ss_dssp HHHTSCSEEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHH
T ss_pred HHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 99999999999 8999999999996 999999999
Q ss_pred -----------------------------CChhHHHHHhhhccCCCCCc--cEEEEeChhhHHHHHHHHHHhhc
Q psy9399 348 -----------------------------KFPEDYVHRIGRTGRAGRNG--FAVSLVNHAERMNIKKIERFTKQ 390 (453)
Q Consensus 348 -----------------------------~~~~~~~Q~~GR~~R~g~~g--~~~~~~~~~~~~~~~~~~~~~~~ 390 (453)
.+..+|+||+||+||.|..| .++.++...+...+..+++.++.
T Consensus 395 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 395 EVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp HHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 68999999999999987775 47777766677778888777664
No 32
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.2e-41 Score=360.36 Aligned_cols=310 Identities=20% Similarity=0.230 Sum_probs=240.3
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCc
Q psy9399 19 VGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP 98 (453)
Q Consensus 19 ~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
++| +|+++|.++++.+++++++++.||||+|||++|++++...+.. +.
T Consensus 36 ~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~-------------------------------g~ 83 (997)
T 4a4z_A 36 WPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN-------------------------------MT 83 (997)
T ss_dssp CSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT-------------------------------TC
T ss_pred CCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc-------------------------------CC
Confidence 566 5999999999999999999999999999999999988876543 55
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEE
Q psy9399 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178 (453)
Q Consensus 99 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIi 178 (453)
+++|++|+++|+.|+++.+.++.. .+.+..++|+... ...++|+|+||+.|.+.+......+.++++|||
T Consensus 84 ~vlvl~PtraLa~Q~~~~l~~~~~---~~~v~~l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvVi 153 (997)
T 4a4z_A 84 KTIYTSPIKALSNQKFRDFKETFD---DVNIGLITGDVQI-------NPDANCLIMTTEILRSMLYRGADLIRDVEFVIF 153 (997)
T ss_dssp EEEEEESCGGGHHHHHHHHHTTC-----CCEEEECSSCEE-------CTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHcC---CCeEEEEeCCCcc-------CCCCCEEEECHHHHHHHHHhCchhhcCCCEEEE
Confidence 899999999999999999887642 4678888887652 245799999999999998887777899999999
Q ss_pred echhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhc---CCCeEEEecccccccccceEEEE-------
Q psy9399 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENIT---KDPLILKVNSIEKKQKNITQSIL------- 248 (453)
Q Consensus 179 DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~------- 248 (453)
||+|++.++++...+..++..++...++|++|||+++.. .+..++. ..+..+...... ...+.+.+.
T Consensus 154 DEaH~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r--~~pl~~~v~~~~~~~~ 230 (997)
T 4a4z_A 154 DEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTY-EFANWIGRTKQKNIYVISTPKR--PVPLEINIWAKKELIP 230 (997)
T ss_dssp CCTTCCCTTCTTCCHHHHHHHSCTTCEEEEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSC--SSCEEEEEEETTEEEE
T ss_pred ECcccccccchHHHHHHHHHhcccCCCEEEEcCCCCChH-HHHHHHhcccCCceEEEecCCC--CccceEEEecCCcchh
Confidence 999999999999999999999999999999999997643 3333322 122211111100 000100000
Q ss_pred EE------------------------------------------------------------------------------
Q psy9399 249 FV------------------------------------------------------------------------------ 250 (453)
Q Consensus 249 ~~------------------------------------------------------------------------------ 250 (453)
..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 310 (997)
T 4a4z_A 231 VINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNK 310 (997)
T ss_dssp EECTTCCBCHHHHHHHHHHHC-----------------------------------------------------------
T ss_pred cccchhhhhHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00
Q ss_pred -------cchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCC-----------------------------
Q psy9399 251 -------DDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGF----------------------------- 294 (453)
Q Consensus 251 -------~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~----------------------------- 294 (453)
.........+...+......++||||++++.|+.+++.|...++
T Consensus 311 ~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~ 390 (997)
T 4a4z_A 311 RKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQ 390 (997)
T ss_dssp ------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHH
T ss_pred cccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchh
Confidence 00111122333444555667999999999999999999977554
Q ss_pred ----------ceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCC---------ChhHHHH
Q psy9399 295 ----------LAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPK---------FPEDYVH 355 (453)
Q Consensus 295 ----------~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~---------~~~~~~Q 355 (453)
.+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|+ ..||+.+.+. +..+|.|
T Consensus 391 ~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Q 469 (997)
T 4a4z_A 391 ILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQ 469 (997)
T ss_dssp HHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHH
T ss_pred HHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhH
Confidence 4789999999999999999999999999999999999999999 5555555444 8999999
Q ss_pred HhhhccCCCC--CccEEEEeC
Q psy9399 356 RIGRTGRAGR--NGFAVSLVN 374 (453)
Q Consensus 356 ~~GR~~R~g~--~g~~~~~~~ 374 (453)
++|||||.|. .|.+++++.
T Consensus 470 r~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 470 MAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp HHGGGCCTTTCSSEEEEEECC
T ss_pred HhcccccCCCCcceEEEEecC
Confidence 9999999984 477888874
No 33
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=3.1e-41 Score=339.86 Aligned_cols=322 Identities=19% Similarity=0.207 Sum_probs=244.6
Q ss_pred hCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCC
Q psy9399 18 KVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ 97 (453)
Q Consensus 18 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (453)
.+|+ .|+++|..+++.++.|+ +..|+||+|||++|.+|++..... +
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~-------------------------------g 124 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT-------------------------------G 124 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT-------------------------------S
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc-------------------------------C
Confidence 4899 89999999999999998 999999999999999999854332 4
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHH-HHHHhcC------CCCC
Q psy9399 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRL-IDHMNSG------KINF 170 (453)
Q Consensus 98 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~------~~~~ 170 (453)
..++|++||++||.|.++++..+....+ +++..++||......... .+++|+|+||+.| ++++... ...+
T Consensus 125 ~~vlVltptreLA~qd~e~~~~l~~~lg-l~v~~i~gg~~~~~r~~~--~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~l 201 (844)
T 1tf5_A 125 KGVHVVTVNEYLASRDAEQMGKIFEFLG-LTVGLNLNSMSKDEKREA--YAADITYSTNNELGFDYLRDNMVLYKEQMVQ 201 (844)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHHHHHTT-CCEEECCTTSCHHHHHHH--HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCC
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHHHHh--cCCCEEEECchhhhHHHHHHhhhcchhhhcc
Confidence 5899999999999999999999887775 999999999876543333 3689999999999 6766543 3456
Q ss_pred CCccEEEEechhhhc-ccC---------------ChHHHHHHHhhCC---------CCccEE-----------------E
Q psy9399 171 SHLQILVLDEADRML-DMG---------------FINDIEKIVDATP---------VTRQTM-----------------L 208 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~-~~~---------------~~~~~~~~~~~~~---------~~~~~i-----------------~ 208 (453)
+.+.++|+||||+++ +.+ +...+..++..++ +.+|++ +
T Consensus 202 r~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~L 281 (844)
T 1tf5_A 202 RPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNL 281 (844)
T ss_dssp CCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCT
T ss_pred cCCCEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCcccc
Confidence 889999999999987 653 5678888888886 356776 7
Q ss_pred EEeecChHHHHHH-----HhhcC-CC-eEE------Eec-----------------------------c-----------
Q psy9399 209 FSATLDGIVGNMA-----ENITK-DP-LIL------KVN-----------------------------S----------- 235 (453)
Q Consensus 209 ~SAT~~~~~~~~~-----~~~~~-~~-~~~------~~~-----------------------------~----------- 235 (453)
+|||.+.....+. ..++. +. ..+ .+. .
T Consensus 282 fsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q 361 (844)
T 1tf5_A 282 FDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQ 361 (844)
T ss_dssp TSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHH
T ss_pred CCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHH
Confidence 8999764333221 11111 10 000 000 0
Q ss_pred ---------------------------------cccccccce--EEEEEEcchhhHHHHHHHHHh-h-CCCCcEEEEecc
Q psy9399 236 ---------------------------------IEKKQKNIT--QSILFVDDILHKNRLLDYLLR-D-KRVGQAVVFTAT 278 (453)
Q Consensus 236 ---------------------------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~lvf~~~ 278 (453)
.+.+.+... +......+...+...+...+. . ..+.++||||+|
T Consensus 362 ~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s 441 (844)
T 1tf5_A 362 NYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVA 441 (844)
T ss_dssp HHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESC
T ss_pred HHHHHHhhhccCCcccchhHHHHHHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECC
Confidence 000000000 011222234445444444333 2 345789999999
Q ss_pred chhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCC--------CCcEEEEcCCCCCh
Q psy9399 279 KRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVP--------AITHVFNYDLPKFP 350 (453)
Q Consensus 279 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~--------~~~~Vi~~~~~~~~ 350 (453)
++.++.+++.|...|+++..+||++.+.+|..+.+.|+.| .|+|||+++++|+|++ ++.+||+++.|.+.
T Consensus 442 ~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~ 519 (844)
T 1tf5_A 442 VETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESR 519 (844)
T ss_dssp HHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSH
T ss_pred HHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCH
Confidence 9999999999999999999999999888887666666665 6999999999999999 78899999999999
Q ss_pred hHHHHHhhhccCCCCCccEEEEeChhhH
Q psy9399 351 EDYVHRIGRTGRAGRNGFAVSLVNHAER 378 (453)
Q Consensus 351 ~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 378 (453)
..|.||+||+||.|.+|.+++|++..|.
T Consensus 520 r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 520 RIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp HHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred HHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 9999999999999999999999987664
No 34
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.6e-42 Score=353.45 Aligned_cols=328 Identities=20% Similarity=0.282 Sum_probs=241.9
Q ss_pred HHHHHHHHhCCCCCCcHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhcccccccc
Q psy9399 10 ELVLKALVKVGYTKPTGVQEQAIPAAISG------RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNK 83 (453)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~------~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 83 (453)
+.+...+..++| .|+++|.++++.++++ .+++++||||||||++|+++++..+..
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~------------------ 416 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA------------------ 416 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc------------------
Confidence 445566678999 8999999999998865 489999999999999999999988765
Q ss_pred chhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHH---Hh-cCCCCEEEeChHHH
Q psy9399 84 IYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQ---LL-SRNPEILLATPGRL 159 (453)
Q Consensus 84 ~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~Ilv~T~~~l 159 (453)
+.+++|++||++|+.|+.+.+.++....+ +++..++|+........ .+ .+.++|+|+||+.+
T Consensus 417 -------------g~qvlvlaPtr~La~Q~~~~l~~~~~~~g-i~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll 482 (780)
T 1gm5_A 417 -------------GFQTAFMVPTSILAIQHYRRTVESFSKFN-IHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALI 482 (780)
T ss_dssp -------------TSCEEEECSCHHHHHHHHHHHHHHHTCSS-CCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHH
T ss_pred -------------CCeEEEEeCcHHHHHHHHHHHHHHhhhcC-ceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH
Confidence 45899999999999999999999876544 88999999987655432 22 34589999999877
Q ss_pred HHHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccc
Q psy9399 160 IDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239 (453)
Q Consensus 160 ~~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (453)
.+ ...+.++++||+||+|++.... ...+.......+++++|||+.+...... ...+.........+..
T Consensus 483 ~~-----~~~~~~l~lVVIDEaHr~g~~q-----r~~l~~~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~p~~ 550 (780)
T 1gm5_A 483 QE-----DVHFKNLGLVIIDEQHRFGVKQ-----REALMNKGKMVDTLVMSATPIPRSMALA--FYGDLDVTVIDEMPPG 550 (780)
T ss_dssp HH-----CCCCSCCCEEEEESCCCC----------CCCCSSSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEECCCCSS
T ss_pred hh-----hhhccCCceEEecccchhhHHH-----HHHHHHhCCCCCEEEEeCCCCHHHHHHH--HhCCcceeeeeccCCC
Confidence 54 3467899999999999864322 1111222345789999999876443332 2232211112211111
Q ss_pred cccceEEEEEEcchhhHHHHHHHHHhh-CCCCcEEEEeccc--------hhHHHHHHHHhh---CCCceeecCCCCCHHH
Q psy9399 240 QKNITQSILFVDDILHKNRLLDYLLRD-KRVGQAVVFTATK--------RDADIIADRLNI---SGFLAAPLHGDLHQNA 307 (453)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~lvf~~~~--------~~~~~l~~~L~~---~~~~~~~~~~~~~~~~ 307 (453)
...+.... . .......++..+.+. ..+++++|||++. ..++.+++.|.. .+..+..+||+|++.+
T Consensus 551 r~~i~~~~--~-~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~e 627 (780)
T 1gm5_A 551 RKEVQTML--V-PMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEE 627 (780)
T ss_dssp CCCCEECC--C-CSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSC
T ss_pred CcceEEEE--e-ccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHH
Confidence 12222111 1 222333444444433 4567899999976 457888999988 5788999999999999
Q ss_pred HHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCC-ChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHH
Q psy9399 308 RNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPK-FPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIE 385 (453)
Q Consensus 308 r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~-~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~ 385 (453)
|..+++.|++|+.+|||||+++++|+|+|++++||++++|. +..++.||+||+||.|..|.|++++++.+....+++.
T Consensus 628 R~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~~~rl~ 706 (780)
T 1gm5_A 628 KDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERLR 706 (780)
T ss_dssp SHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHHHH
T ss_pred HHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChHHHHHHH
Confidence 99999999999999999999999999999999999999985 6889999999999999999999998844444444443
No 35
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.7e-41 Score=371.33 Aligned_cols=350 Identities=16% Similarity=0.165 Sum_probs=257.4
Q ss_pred CHHHHHHHHhCCCCCCcHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhh
Q psy9399 9 HELVLKALVKVGYTKPTGVQEQAIPAAISG-RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTH 87 (453)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~-~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (453)
.+...+++...+|..++|+|.++++.++++ ++++++||||||||+++.+++++.+...
T Consensus 912 ~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~--------------------- 970 (1724)
T 4f92_B 912 RNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS--------------------- 970 (1724)
T ss_dssp CCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC---------------------
T ss_pred cCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC---------------------
Confidence 345566666778999999999999999865 6799999999999999999999988763
Q ss_pred hhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcC-
Q psy9399 88 KERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSG- 166 (453)
Q Consensus 88 ~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~- 166 (453)
.+.++||++|+++|+.|.++.+.+......++++..++|+....... ..+++|+||||+++..++++.
T Consensus 971 --------~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~---~~~~~IiV~TPEkld~llr~~~ 1039 (1724)
T 4f92_B 971 --------SEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKL---LGKGNIIISTPEKWDILSRRWK 1039 (1724)
T ss_dssp --------TTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHH---HHHCSEEEECHHHHHHHHTTTT
T ss_pred --------CCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhh---cCCCCEEEECHHHHHHHHhCcc
Confidence 24589999999999999999887644332347888888876543322 235799999999997766543
Q ss_pred -CCCCCCccEEEEechhhhcccCChHHHHHHH-------hhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEeccccc
Q psy9399 167 -KINFSHLQILVLDEADRMLDMGFINDIEKIV-------DATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238 (453)
Q Consensus 167 -~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~-------~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (453)
...++++++||+||+|.+.+. .+..+..++ ...+.+.|+|++|||+++ ...+..++...+..+.......
T Consensus 1040 ~~~~l~~v~lvViDE~H~l~d~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~ 1117 (1724)
T 4f92_B 1040 QRKNVQNINLFVVDEVHLIGGE-NGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNV 1117 (1724)
T ss_dssp TCHHHHSCSEEEECCGGGGGST-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGG
T ss_pred cccccceeeEEEeechhhcCCC-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCC
Confidence 233688999999999988764 454444333 345678899999999986 4566666644432222222222
Q ss_pred ccccceEEEEEEcchhhHH-------HHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhC-------------------
Q psy9399 239 KQKNITQSILFVDDILHKN-------RLLDYLLRDKRVGQAVVFTATKRDADIIADRLNIS------------------- 292 (453)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~------------------- 292 (453)
.+..+...+.......... .....+.....+++++|||+++..|+.++..|...
T Consensus 1118 RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~ 1197 (1724)
T 4f92_B 1118 RPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLI 1197 (1724)
T ss_dssp CSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHH
T ss_pred CCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHH
Confidence 2223333333332221111 23334445567789999999999999888776320
Q ss_pred ---------------CCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEE----c------CCC
Q psy9399 293 ---------------GFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFN----Y------DLP 347 (453)
Q Consensus 293 ---------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~----~------~~~ 347 (453)
...++.+||+|++.+|..+++.|++|.++|||||+++++|+|+|...+||. + ..|
T Consensus 1198 ~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~ 1277 (1724)
T 4f92_B 1198 PYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVD 1277 (1724)
T ss_dssp HHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEE
T ss_pred HHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCC
Confidence 123789999999999999999999999999999999999999999888883 2 235
Q ss_pred CChhHHHHHhhhccCCCCC--ccEEEEeChhhHHHHHHHHHHhhcCCCcc
Q psy9399 348 KFPEDYVHRIGRTGRAGRN--GFAVSLVNHAERMNIKKIERFTKQQIPIE 395 (453)
Q Consensus 348 ~~~~~~~Q~~GR~~R~g~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (453)
.+..+|.||+|||||.|.+ |.+++++.+.+... +++++....|.+
T Consensus 1278 ~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~---~~~ll~~~~pve 1324 (1724)
T 4f92_B 1278 YPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDF---FKKFLYEPLPVE 1324 (1724)
T ss_dssp CCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHH---HHHHTTSCBCCC
T ss_pred CCHHHHHHhhccccCCCCCCceEEEEEecchHHHH---HHHHhCCCCcee
Confidence 6899999999999999874 89999998877655 445666665543
No 36
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.7e-42 Score=360.68 Aligned_cols=315 Identities=17% Similarity=0.251 Sum_probs=217.9
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEE
Q psy9399 23 KPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLV 102 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 102 (453)
.|+++|.++++.+++++++++.+|||+|||++|++|++..+..... ...+.++||
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~-------------------------~~~~~~vlv 61 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK-------------------------ASEPGKVIV 61 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH-------------------------HTCCCCBCC
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc-------------------------cCCCCeEEE
Confidence 6999999999999999999999999999999999999988765310 112358999
Q ss_pred EcCcHHHHHHH-HHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHH------hcCCCCCCCccE
Q psy9399 103 LTPTRELALQV-TAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHM------NSGKINFSHLQI 175 (453)
Q Consensus 103 l~P~~~L~~q~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l------~~~~~~~~~~~~ 175 (453)
++|+++|+.|| .+++.+++.. .+.+..++|+.........+...++|+|+||+.|.+.+ ......+.++++
T Consensus 62 l~P~~~L~~Q~~~~~l~~~~~~--~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~l 139 (699)
T 4gl2_A 62 LVNKVLLVEQLFRKEFQPFLKK--WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSL 139 (699)
T ss_dssp EESCSHHHHHHHHHTHHHHHTT--TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSE
T ss_pred EECCHHHHHHHHHHHHHHHcCc--CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcE
Confidence 99999999999 9999998754 37888888887665544555567899999999999888 344566789999
Q ss_pred EEEechhhhcccC-ChHHHHHHHhhC-------------CCCccEEEEEeecChH--------H---HHHHHhhcCCCeE
Q psy9399 176 LVLDEADRMLDMG-FINDIEKIVDAT-------------PVTRQTMLFSATLDGI--------V---GNMAENITKDPLI 230 (453)
Q Consensus 176 iIiDE~h~~~~~~-~~~~~~~~~~~~-------------~~~~~~i~~SAT~~~~--------~---~~~~~~~~~~~~~ 230 (453)
|||||||++.... +...+..+.... ....+++++|||+... . ..+...+......
T Consensus 140 vViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~ 219 (699)
T 4gl2_A 140 IIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIK 219 (699)
T ss_dssp EEEESGGGCBTTBSSCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCC
T ss_pred EEEECccccCccchHHHHHHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEE
Confidence 9999999886544 333332222211 1445899999999851 1 2222211110000
Q ss_pred EEecc---cccccccceEEEEEEcc-------------------------------------------------------
Q psy9399 231 LKVNS---IEKKQKNITQSILFVDD------------------------------------------------------- 252 (453)
Q Consensus 231 ~~~~~---~~~~~~~~~~~~~~~~~------------------------------------------------------- 252 (453)
..... ...........+.....
T Consensus 220 ~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (699)
T 4gl2_A 220 TVKENLDQLKNQIQEPCKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERV 299 (699)
T ss_dssp CCCTTHHHHHHHSCCCEEEEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHH
T ss_pred eecCchHHHhhhcCCCceEEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHH
Confidence 00000 00000000000000000
Q ss_pred --------------------------------------------------------------------------------
Q psy9399 253 -------------------------------------------------------------------------------- 252 (453)
Q Consensus 253 -------------------------------------------------------------------------------- 252 (453)
T Consensus 300 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 379 (699)
T 4gl2_A 300 CAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYE 379 (699)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence
Q ss_pred ---hhhHHHHHHHHHhhCC-CCcEEEEeccchhHHHHHHHHhhC------CCceeecCCC--------CCHHHHHHHHHH
Q psy9399 253 ---ILHKNRLLDYLLRDKR-VGQAVVFTATKRDADIIADRLNIS------GFLAAPLHGD--------LHQNARNRTLEN 314 (453)
Q Consensus 253 ---~~~~~~~~~~l~~~~~-~~~~lvf~~~~~~~~~l~~~L~~~------~~~~~~~~~~--------~~~~~r~~~~~~ 314 (453)
.......+........ ++++||||++++.++.+++.|... |+.+..+||+ |+..+|..+++.
T Consensus 380 ~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~ 459 (699)
T 4gl2_A 380 NEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISK 459 (699)
T ss_dssp --CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHH
Confidence 0000011111122223 689999999999999999999987 8999999999 999999999999
Q ss_pred HhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCC
Q psy9399 315 LRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAG 364 (453)
Q Consensus 315 f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g 364 (453)
|++|+.+|||||+++++|+|+|++++||++|+|+++..|.||+||+||.|
T Consensus 460 F~~g~~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g 509 (699)
T 4gl2_A 460 FRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE 509 (699)
T ss_dssp HCC---CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS
T ss_pred HhcCCCcEEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC
Confidence 99999999999999999999999999999999999999999999976654
No 37
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=2e-40 Score=356.09 Aligned_cols=323 Identities=22% Similarity=0.209 Sum_probs=246.0
Q ss_pred CCCCHHHHHHHH-hCCCCCCcHHHHHHHHHHhc----CC--cEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccc
Q psy9399 6 IGLHELVLKALV-KVGYTKPTGVQEQAIPAAIS----GR--DLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLN 78 (453)
Q Consensus 6 l~l~~~~~~~l~-~~~~~~~~~~Q~~~~~~~~~----~~--~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~ 78 (453)
++++......+. .++|. +|++|.++++.+++ ++ ++++++|||+|||++++.+++..+..
T Consensus 586 ~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~------------- 651 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN------------- 651 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT-------------
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh-------------
Confidence 455666666665 47884 89999999999886 55 89999999999999999888876543
Q ss_pred cccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHH---HHh-cCCCCEEEe
Q psy9399 79 QNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQM---QLL-SRNPEILLA 154 (453)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~Ilv~ 154 (453)
+.+++|++||++|+.|+.+.+.++....+ +++..+++........ ..+ .+.++|+|+
T Consensus 652 ------------------g~~vlvlvPt~~La~Q~~~~~~~~~~~~~-i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~ 712 (1151)
T 2eyq_A 652 ------------------HKQVAVLVPTTLLAQQHYDNFRDRFANWP-VRIEMISRFRSAKEQTQILAEVAEGKIDILIG 712 (1151)
T ss_dssp ------------------TCEEEEECSSHHHHHHHHHHHHHHSTTTT-CCEEEESTTSCHHHHHHHHHHHHTTCCSEEEE
T ss_pred ------------------CCeEEEEechHHHHHHHHHHHHHHhhcCC-CeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 45999999999999999999998765443 7777777765544432 222 335899999
Q ss_pred ChHHHHHHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEec
Q psy9399 155 TPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVN 234 (453)
Q Consensus 155 T~~~l~~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 234 (453)
||+.+. +...+.++++||+||+|++ .......+..++...+++++|||+.+...........++..+..
T Consensus 713 T~~ll~-----~~~~~~~l~lvIiDEaH~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~- 781 (1151)
T 2eyq_A 713 THKLLQ-----SDVKFKDLGLLIVDEEHRF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIAT- 781 (1151)
T ss_dssp CTHHHH-----SCCCCSSEEEEEEESGGGS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCC-
T ss_pred CHHHHh-----CCccccccceEEEechHhc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEec-
Confidence 998663 3456789999999999985 33344555555667799999999876555444433333322221
Q ss_pred ccccccccceEEEEEEcchhhHHHHHHHHHh-hCCCCcEEEEeccchhHHHHHHHHhhC--CCceeecCCCCCHHHHHHH
Q psy9399 235 SIEKKQKNITQSILFVDDILHKNRLLDYLLR-DKRVGQAVVFTATKRDADIIADRLNIS--GFLAAPLHGDLHQNARNRT 311 (453)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~ 311 (453)
.+.....+......... ..+...++. ...+++++|||++++.++.+++.|++. +..+..+||+|++.+|.++
T Consensus 782 -~~~~r~~i~~~~~~~~~----~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~i 856 (1151)
T 2eyq_A 782 -PPARRLAVKTFVREYDS----MVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERV 856 (1151)
T ss_dssp -CCCBCBCEEEEEEECCH----HHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHH
T ss_pred -CCCCccccEEEEecCCH----HHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHH
Confidence 11121223333332222 222222222 245689999999999999999999886 7889999999999999999
Q ss_pred HHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCC-CCChhHHHHHhhhccCCCCCccEEEEeChhh
Q psy9399 312 LENLRRGRIKILVATDVAARGIDVPAITHVFNYDL-PKFPEDYVHRIGRTGRAGRNGFAVSLVNHAE 377 (453)
Q Consensus 312 ~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~-~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 377 (453)
++.|++|+.+|||||+++++|+|+|++++||+++. +++..+|.||+||+||.|+.|.|++++.+.+
T Consensus 857 l~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 857 MNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp HHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred HHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 99999999999999999999999999999999888 5789999999999999999999999987653
No 38
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=7.2e-41 Score=369.07 Aligned_cols=347 Identities=19% Similarity=0.265 Sum_probs=250.5
Q ss_pred CCCCCcHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCc
Q psy9399 20 GYTKPTGVQEQAIPAAIS-GRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP 98 (453)
Q Consensus 20 ~~~~~~~~Q~~~~~~~~~-~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
||..|+++|.++++.++. ++|++++||||||||+++.+++++.+.+.... .......+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~--------------------~~~~~~~~~ 135 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINM--------------------DGTINVDDF 135 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCT--------------------TSSCCTTSC
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccc--------------------cccccCCCC
Confidence 799999999999999875 67899999999999999999999988763211 011123466
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCC--CCCCCccEE
Q psy9399 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGK--INFSHLQIL 176 (453)
Q Consensus 99 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~--~~~~~~~~i 176 (453)
++||++|+++|+.|..+.+.+.....+ +++..++|+...... ....++|+||||+++...+.... ..++++++|
T Consensus 136 k~lyiaP~kALa~e~~~~l~~~~~~~g-i~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~v 211 (1724)
T 4f92_B 136 KIIYIAPMRSLVQEMVGSFGKRLATYG-ITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLI 211 (1724)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHTTTT-CCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEE
T ss_pred EEEEECCHHHHHHHHHHHHHHHHhhCC-CEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEE
Confidence 999999999999999999988765554 888899988764332 12368999999999866554432 236889999
Q ss_pred EEechhhhcccCChHHHHHHHh-------hCCCCccEEEEEeecChHHHHHHHhhcCCCe-EEEecccccccccceEEEE
Q psy9399 177 VLDEADRMLDMGFINDIEKIVD-------ATPVTRQTMLFSATLDGIVGNMAENITKDPL-ILKVNSIEKKQKNITQSIL 248 (453)
Q Consensus 177 IiDE~h~~~~~~~~~~~~~~~~-------~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 248 (453)
|+||+|.+.+ ..+..++.++. ..+...|+|++|||+++ ...++.++...+. .+........+..+.+.++
T Consensus 212 IiDEvH~l~d-~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~ 289 (1724)
T 4f92_B 212 ILDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYV 289 (1724)
T ss_dssp EETTGGGGGS-TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGGGCSSCEEEECC
T ss_pred EEecchhcCC-ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCCCccCccEEEEe
Confidence 9999997766 45666554443 35677899999999986 4555655543321 1111111111122333333
Q ss_pred EEcchh--hHH----H-HHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhC-----------------------------
Q psy9399 249 FVDDIL--HKN----R-LLDYLLRDKRVGQAVVFTATKRDADIIADRLNIS----------------------------- 292 (453)
Q Consensus 249 ~~~~~~--~~~----~-~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~----------------------------- 292 (453)
...... ... . ....+.+...++++||||+|++.|+.+++.|...
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (1724)
T 4f92_B 290 GITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCK 369 (1724)
T ss_dssp EECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCS
T ss_pred ccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccc
Confidence 332221 111 1 2233344456679999999999999888887421
Q ss_pred --------CCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEE----cC------CCCChhHHH
Q psy9399 293 --------GFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFN----YD------LPKFPEDYV 354 (453)
Q Consensus 293 --------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~----~~------~~~~~~~~~ 354 (453)
...++.+||+|++.+|..+++.|++|.++|||||++++.|||+|..++||. ++ .|.+..+|.
T Consensus 370 ~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~ 449 (1724)
T 4f92_B 370 NLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDIL 449 (1724)
T ss_dssp THHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHH
T ss_pred cHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHH
Confidence 123788999999999999999999999999999999999999999999885 33 246899999
Q ss_pred HHhhhccCCCCC--ccEEEEeChhhHHHHHHHHHHhhcCCCcc
Q psy9399 355 HRIGRTGRAGRN--GFAVSLVNHAERMNIKKIERFTKQQIPIE 395 (453)
Q Consensus 355 Q~~GR~~R~g~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (453)
||+|||||.|.+ |.+++++...+..... ..+..+.|++
T Consensus 450 Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~---~ll~~~~pie 489 (1724)
T 4f92_B 450 QMLGRAGRPQYDTKGEGILITSHGELQYYL---SLLNQQLPIE 489 (1724)
T ss_dssp HHHTTBSCTTTCSCEEEEEEEESTTCCHHH---HHTTTCSCCC
T ss_pred HhhhhccCCCCCCccEEEEEecchhHHHHH---HHHcCCCcch
Confidence 999999998754 8899998877654433 3445554443
No 39
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=8.2e-42 Score=342.45 Aligned_cols=310 Identities=19% Similarity=0.187 Sum_probs=227.7
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEE
Q psy9399 23 KPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLV 102 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 102 (453)
+|+++|.++++.+++++++++++|||+|||++++.++...+.. .+.++||
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~------------------------------~~~~vlv 162 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN------------------------------YEGKILI 162 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH------------------------------CSSEEEE
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC------------------------------CCCeEEE
Confidence 7999999999999999999999999999999999988877654 1348999
Q ss_pred EcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEechh
Q psy9399 103 LTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182 (453)
Q Consensus 103 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h 182 (453)
++|+++|+.||.+.+.+++... ...+..++++...... .....+|+|+|++.+... ....+.++++||+||+|
T Consensus 163 l~P~~~L~~Q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H 235 (510)
T 2oca_A 163 IVPTTALTTQMADDFVDYRLFS-HAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECH 235 (510)
T ss_dssp EESSHHHHHHHHHHHHHTTSSC-GGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGG
T ss_pred EECcHHHHHHHHHHHHHhhcCC-ccceEEEecCCccccc---cccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCc
Confidence 9999999999999998885433 3677788887664433 345789999999987543 23456789999999999
Q ss_pred hhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHH-hhcCCCeEEEecccc------cccccceEEEEEEcc---
Q psy9399 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAE-NITKDPLILKVNSIE------KKQKNITQSILFVDD--- 252 (453)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~--- 252 (453)
++.+ ..+..++..++...+++++|||++........ .....+......... .....+.........
T Consensus 236 ~~~~----~~~~~il~~~~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 311 (510)
T 2oca_A 236 LATG----KSISSIISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFT 311 (510)
T ss_dssp GCCH----HHHHHHGGGCTTCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHH
T ss_pred CCCc----ccHHHHHHhcccCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHh
Confidence 9875 45667777787788999999999654322111 111112221111100 000001111111110
Q ss_pred -------h----------hhHHHHHHHHHhhC---CCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHH
Q psy9399 253 -------I----------LHKNRLLDYLLRDK---RVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTL 312 (453)
Q Consensus 253 -------~----------~~~~~~~~~l~~~~---~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 312 (453)
. ..+...+..++... .+.+++||++ .++++.+++.|.+.+..+..+||+++..+|..++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~ 390 (510)
T 2oca_A 312 TKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMK 390 (510)
T ss_dssp HHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHH
T ss_pred ccccccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHH
Confidence 0 01112222333222 3345555555 8999999999999888999999999999999999
Q ss_pred HHHhcCCccEEEEe-CCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeC
Q psy9399 313 ENLRRGRIKILVAT-DVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVN 374 (453)
Q Consensus 313 ~~f~~g~~~vLv~T-~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~ 374 (453)
+.|++|+.+||||| +++++|+|+|++++||++++|++..+|.|++||+||.|+.+..+++++
T Consensus 391 ~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 391 TLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred HHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 99999999999999 999999999999999999999999999999999999998874444443
No 40
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=9.4e-40 Score=328.11 Aligned_cols=321 Identities=19% Similarity=0.183 Sum_probs=223.1
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCc
Q psy9399 19 VGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP 98 (453)
Q Consensus 19 ~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
+|. .|+++|..+++.++.|+ +..++||+|||++|++|++..... +.
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~-------------------------------g~ 116 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT-------------------------------GK 116 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT-------------------------------SS
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc-------------------------------CC
Confidence 676 79999999999999987 999999999999999999865433 44
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHH-HHHHhcCC------CCCC
Q psy9399 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRL-IDHMNSGK------INFS 171 (453)
Q Consensus 99 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~~------~~~~ 171 (453)
+++|++||++|+.|.++++..+....+ +++..++||...... ....+++|+|+||+.| ++++..+. ..++
T Consensus 117 ~vlVltPTreLA~Q~~e~~~~l~~~lg-l~v~~i~GG~~~~~r--~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~ 193 (853)
T 2fsf_A 117 GVHVVTVNDYLAQRDAENNRPLFEFLG-LTVGINLPGMPAPAK--REAYAADITYGTNNEYGFDYLRDNMAFSPEERVQR 193 (853)
T ss_dssp CCEEEESSHHHHHHHHHHHHHHHHHTT-CCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCC
T ss_pred cEEEEcCCHHHHHHHHHHHHHHHHhcC-CeEEEEeCCCCHHHH--HHhcCCCEEEECCchhhHHHHHhhhhccHhHhccc
Confidence 899999999999999999999987775 999999999886433 3333689999999999 78887542 4568
Q ss_pred CccEEEEechhhhc-ccC---------------ChHHHHHHHhhCCC--------------------CccEE--------
Q psy9399 172 HLQILVLDEADRML-DMG---------------FINDIEKIVDATPV--------------------TRQTM-------- 207 (453)
Q Consensus 172 ~~~~iIiDE~h~~~-~~~---------------~~~~~~~~~~~~~~--------------------~~~~i-------- 207 (453)
+++++|+||+|+++ +.+ +...+..++..++. .+|++
T Consensus 194 ~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~ 273 (853)
T 2fsf_A 194 KLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVL 273 (853)
T ss_dssp SCCEEEESCHHHHTTTTTTCEEEEEEC-----------------------------------------------------
T ss_pred CCcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHH
Confidence 89999999999988 443 45666777766653 34443
Q ss_pred ----------------EEEeecChHHHHHH-----HhhcC--------CC-----------------------------e
Q psy9399 208 ----------------LFSATLDGIVGNMA-----ENITK--------DP-----------------------------L 229 (453)
Q Consensus 208 ----------------~~SAT~~~~~~~~~-----~~~~~--------~~-----------------------------~ 229 (453)
++|||.+.....+. ..++. ++ .
T Consensus 274 ~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake 353 (853)
T 2fsf_A 274 IEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKE 353 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhCCcccccccccCcccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcc
Confidence 78888653221110 00000 00 0
Q ss_pred EEEecccccccccce----------------------------------------------EEEEEEcchhhHHHHHHHH
Q psy9399 230 ILKVNSIEKKQKNIT----------------------------------------------QSILFVDDILHKNRLLDYL 263 (453)
Q Consensus 230 ~~~~~~~~~~~~~~~----------------------------------------------~~~~~~~~~~~~~~~~~~l 263 (453)
.+.+.........+. +......+...+...+...
T Consensus 354 ~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~ 433 (853)
T 2fsf_A 354 GVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIED 433 (853)
T ss_dssp ---CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHH
T ss_pred cceecccccccceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHH
Confidence 111100000000000 0011222344455554444
Q ss_pred H-hh-CCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCC---
Q psy9399 264 L-RD-KRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAI--- 338 (453)
Q Consensus 264 ~-~~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~--- 338 (453)
+ .. ..+.++||||+|++.++.+++.|...|+++..+||++...++..+.+.|+.| .|+|||+++++|+|++..
T Consensus 434 i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~ 511 (853)
T 2fsf_A 434 IKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSW 511 (853)
T ss_dssp HHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCH
T ss_pred HHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCch
Confidence 4 32 4567899999999999999999999999999999999888888888889888 699999999999999863
Q ss_pred ----------------------------------cEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhH
Q psy9399 339 ----------------------------------THVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAER 378 (453)
Q Consensus 339 ----------------------------------~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 378 (453)
.+||+++.|.+...|.|++||+||.|.+|.++.|++..|.
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 512 QAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred HhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 5899999999999999999999999999999999987764
No 41
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.7e-39 Score=322.50 Aligned_cols=292 Identities=20% Similarity=0.241 Sum_probs=217.7
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEE
Q psy9399 23 KPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLV 102 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 102 (453)
.|+++|.++++.+++++++++++|||+|||++++.++... +.++||
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~----------------------------------~~~~Lv 138 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----------------------------------STPTLI 138 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH----------------------------------CSCEEE
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc----------------------------------CCCEEE
Confidence 6899999999999999899999999999999999888754 338999
Q ss_pred EcCcHHHHHHHHHHHHHHhcccCCee-EEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEech
Q psy9399 103 LTPTRELALQVTAATERYGLYMKKIK-AISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181 (453)
Q Consensus 103 l~P~~~L~~q~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~ 181 (453)
++|+++|+.||.+++.++ ++. +..++|+.. ...+|+|+|++.+...+..- ..++++||+||+
T Consensus 139 l~P~~~L~~Q~~~~~~~~-----~~~~v~~~~g~~~---------~~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEa 201 (472)
T 2fwr_A 139 VVPTLALAEQWKERLGIF-----GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEV 201 (472)
T ss_dssp EESSHHHHHHHHHHGGGG-----CGGGEEEBSSSCB---------CCCSEEEEEHHHHHHTHHHH---TTTCSEEEEETG
T ss_pred EECCHHHHHHHHHHHHhC-----CCcceEEECCCcC---------CcCCEEEEEcHHHHHHHHHh---cCCCCEEEEECC
Confidence 999999999999999884 266 777777654 35799999999998765421 246899999999
Q ss_pred hhhcccCChHHHHHHHhhCCCCccEEEEEeecChH-------------------HHHHHHhhcCCCeEE--Eecccccc-
Q psy9399 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGI-------------------VGNMAENITKDPLIL--KVNSIEKK- 239 (453)
Q Consensus 182 h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~-------------------~~~~~~~~~~~~~~~--~~~~~~~~- 239 (453)
|++.+..+.. +...+ ...+++++||||... ...+...++..+... .....+..
T Consensus 202 H~~~~~~~~~----~~~~~-~~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 276 (472)
T 2fwr_A 202 HHLPAESYVQ----IAQMS-IAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDER 276 (472)
T ss_dssp GGTTSTTTHH----HHHTC-CCSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHH
T ss_pred cCCCChHHHH----HHHhc-CCCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHH
Confidence 9999887654 34444 346799999999621 112211111111110 00000000
Q ss_pred -----------------------cccceEEEE--------------------EEcchhhHHHHHHHHHhhCCCCcEEEEe
Q psy9399 240 -----------------------QKNITQSIL--------------------FVDDILHKNRLLDYLLRDKRVGQAVVFT 276 (453)
Q Consensus 240 -----------------------~~~~~~~~~--------------------~~~~~~~~~~~~~~l~~~~~~~~~lvf~ 276 (453)
.......+. .......+...+..++....++++||||
T Consensus 277 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~ 356 (472)
T 2fwr_A 277 VEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFT 356 (472)
T ss_dssp HHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBC
T ss_pred HHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEE
Confidence 000000000 0001223445666667777788999999
Q ss_pred ccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHH
Q psy9399 277 ATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356 (453)
Q Consensus 277 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~ 356 (453)
++++.++.+++.|. +..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|+++..|.|+
T Consensus 357 ~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~ 431 (472)
T 2fwr_A 357 RHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQR 431 (472)
T ss_dssp SCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHH
T ss_pred CCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHH
Confidence 99999999999985 5679999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCC-ccEE--EEeCh
Q psy9399 357 IGRTGRAGRN-GFAV--SLVNH 375 (453)
Q Consensus 357 ~GR~~R~g~~-g~~~--~~~~~ 375 (453)
+||+||.|+. +.++ .+++.
T Consensus 432 ~GR~~R~g~~k~~~~i~~lv~~ 453 (472)
T 2fwr_A 432 LGRILRPSKGKKEAVLYELISR 453 (472)
T ss_dssp HHHSBCCCTTTCCEEEEEEEEC
T ss_pred HhhccCCCCCCceEEEEEEEeC
Confidence 9999999865 4444 34443
No 42
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=4.1e-38 Score=316.53 Aligned_cols=322 Identities=19% Similarity=0.213 Sum_probs=246.9
Q ss_pred hCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCC
Q psy9399 18 KVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ 97 (453)
Q Consensus 18 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (453)
.+|+ .|+++|..+++.++.|+ +..++||+|||++|.+|++..... +
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~-------------------------------g 152 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA-------------------------------G 152 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT-------------------------------T
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh-------------------------------C
Confidence 4798 89999999999999887 999999999999999999754433 4
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHH-HHHHhcC------CCCC
Q psy9399 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRL-IDHMNSG------KINF 170 (453)
Q Consensus 98 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~------~~~~ 170 (453)
..++|++||++|+.|..+++..+....+ +++..++||......... .+++|+++||+.| ++++..+ ...+
T Consensus 153 ~~v~VvTpTreLA~Qdae~m~~l~~~lG-Lsv~~i~gg~~~~~r~~~--y~~DIvygTpgrlgfDyLrD~m~~~~~~l~l 229 (922)
T 1nkt_A 153 NGVHIVTVNDYLAKRDSEWMGRVHRFLG-LQVGVILATMTPDERRVA--YNADITYGTNNEFGFDYLRDNMAHSLDDLVQ 229 (922)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHHHHHTT-CCEEECCTTCCHHHHHHH--HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCC
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHHHHh--cCCCEEEECchHhhHHHHHhhhhccHhhhcc
Confidence 4799999999999999999999887775 999999999875443332 3689999999999 7887654 3556
Q ss_pred CCccEEEEechhhhc-cc---------------CChHHHHHHHhhCC---------CCccEE-----------------E
Q psy9399 171 SHLQILVLDEADRML-DM---------------GFINDIEKIVDATP---------VTRQTM-----------------L 208 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~-~~---------------~~~~~~~~~~~~~~---------~~~~~i-----------------~ 208 (453)
+.+.++|+||||+++ +. ++...+..++..++ +.+|++ +
T Consensus 230 r~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~L 309 (922)
T 1nkt_A 230 RGHHYAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNL 309 (922)
T ss_dssp CCCCEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSST
T ss_pred CCCCEEEEeChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccc
Confidence 889999999999988 43 46788889999887 667787 7
Q ss_pred EEeecChHHHHHH-----HhhcC--------CCeEEEecc----------------------------------------
Q psy9399 209 FSATLDGIVGNMA-----ENITK--------DPLILKVNS---------------------------------------- 235 (453)
Q Consensus 209 ~SAT~~~~~~~~~-----~~~~~--------~~~~~~~~~---------------------------------------- 235 (453)
+|||.+.....+. ..++. +...+.+..
T Consensus 310 fsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Q 389 (922)
T 1nkt_A 310 YEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQ 389 (922)
T ss_dssp TCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehH
Confidence 8999764333221 11111 111111100
Q ss_pred ---------------------------------cccccccce--EEEEEEcchhhHHHHHHH-HHhh-CCCCcEEEEecc
Q psy9399 236 ---------------------------------IEKKQKNIT--QSILFVDDILHKNRLLDY-LLRD-KRVGQAVVFTAT 278 (453)
Q Consensus 236 ---------------------------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~-l~~~-~~~~~~lvf~~~ 278 (453)
.+.+.+... +......+...+...+.. +... ..+.++||||+|
T Consensus 390 nyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~S 469 (922)
T 1nkt_A 390 NYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTS 469 (922)
T ss_dssp HHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred HHHHhhhhhhccccCchhHHHHHHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECC
Confidence 000000000 111122233445544433 3332 356789999999
Q ss_pred chhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCC--------------------
Q psy9399 279 KRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAI-------------------- 338 (453)
Q Consensus 279 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~-------------------- 338 (453)
++.++.+++.|...|+++..+||++...++..+.+.|+.| .|+|||+++++|+|++..
T Consensus 470 ie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~ 547 (922)
T 1nkt_A 470 VERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVE 547 (922)
T ss_dssp HHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTT
T ss_pred HHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccc
Confidence 9999999999999999999999999888887888888887 699999999999999964
Q ss_pred --------------------------------cEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhH
Q psy9399 339 --------------------------------THVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAER 378 (453)
Q Consensus 339 --------------------------------~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 378 (453)
.+||+++.|.+...|.|++||+||.|.+|.++.|++..|.
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 548 TPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 4899999999999999999999999999999999987765
No 43
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=1.6e-40 Score=335.51 Aligned_cols=314 Identities=17% Similarity=0.153 Sum_probs=227.9
Q ss_pred CCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccch
Q psy9399 6 IGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIY 85 (453)
Q Consensus 6 l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (453)
+++++.+.+++... ...++|+|+.+++.+++++++++.||||||||++|++|++..+..
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-------------------- 213 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-------------------- 213 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------------------
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh--------------------
Confidence 45555555555443 366788888889999999999999999999999999999988765
Q ss_pred hhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhc
Q psy9399 86 THKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNS 165 (453)
Q Consensus 86 ~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~ 165 (453)
.+.++||++||++|+.|+.+.+.. ..+. ..+... . .....+..+.++|.+.+...+..
T Consensus 214 ----------~~~~vLvl~PtreLa~Qi~~~l~~-------~~v~-~~~~~l-~---~~~tp~~~i~~~t~~~l~~~l~~ 271 (618)
T 2whx_A 214 ----------RRLRTLILAPTRVVAAEMEEALRG-------LPIR-YQTPAV-K---SDHTGREIVDLMCHATFTTRLLS 271 (618)
T ss_dssp ----------TTCCEEEEESSHHHHHHHHHHTTT-------SCEE-ECCTTS-S---CCCCSSSCEEEEEHHHHHHHHHH
T ss_pred ----------CCCeEEEEcChHHHHHHHHHHhcC-------Ccee-Eecccc-e---eccCCCceEEEEChHHHHHHHhc
Confidence 245899999999999999987752 2222 111110 0 01122446788898888776665
Q ss_pred CCCCCCCccEEEEechhhhcccCChHHHHHHHhhCC-CCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccccccce
Q psy9399 166 GKINFSHLQILVLDEADRMLDMGFINDIEKIVDATP-VTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNIT 244 (453)
Q Consensus 166 ~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (453)
.. .+.++++||+||||++ +.++...+..+...++ ...|++++|||++.....+.. .++..+......
T Consensus 272 ~~-~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~------- 339 (618)
T 2whx_A 272 ST-RVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI------- 339 (618)
T ss_dssp CS-SCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC-------
T ss_pred cc-cccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccC-------
Confidence 43 5789999999999998 5556666666666654 568999999999765332211 223222222110
Q ss_pred EEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEE
Q psy9399 245 QSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILV 324 (453)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv 324 (453)
+. .....++..+.+ ..+++||||++++.++.+++.|+..++.+..+||+ +|.++++.|++|+.+|||
T Consensus 340 ------~~-~~~~~ll~~l~~--~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLV 406 (618)
T 2whx_A 340 ------PE-RSWNTGFDWITD--YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVV 406 (618)
T ss_dssp ------CS-SCCSSSCHHHHH--CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEE
T ss_pred ------CH-HHHHHHHHHHHh--CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEE
Confidence 00 000112223333 25799999999999999999999999999999985 688899999999999999
Q ss_pred EeCCcccCCCCCCCcEE--------------------EEcCCCCChhHHHHHhhhccCCCC-CccEEEEeC---hhhHHH
Q psy9399 325 ATDVAARGIDVPAITHV--------------------FNYDLPKFPEDYVHRIGRTGRAGR-NGFAVSLVN---HAERMN 380 (453)
Q Consensus 325 ~T~~~~~Gvdi~~~~~V--------------------i~~~~~~~~~~~~Q~~GR~~R~g~-~g~~~~~~~---~~~~~~ 380 (453)
||+++++|+|+| +++| |+++.|.+..+|+||+||+||.|. .|.+++++. +.+...
T Consensus 407 aTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~ 485 (618)
T 2whx_A 407 TTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDH 485 (618)
T ss_dssp ECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTC
T ss_pred ECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHH
Confidence 999999999997 8887 677779999999999999999965 799999997 666666
Q ss_pred HHHHHHHh
Q psy9399 381 IKKIERFT 388 (453)
Q Consensus 381 ~~~~~~~~ 388 (453)
+..++..+
T Consensus 486 l~~le~~i 493 (618)
T 2whx_A 486 AHWTEAKM 493 (618)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhHh
Confidence 66666644
No 44
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=3e-39 Score=317.00 Aligned_cols=288 Identities=18% Similarity=0.192 Sum_probs=210.7
Q ss_pred CCCCCcHHHHHHHHHHhcCCcE-EEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCc
Q psy9399 20 GYTKPTGVQEQAIPAAISGRDL-IVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP 98 (453)
Q Consensus 20 ~~~~~~~~Q~~~~~~~~~~~~~-lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
|+.++++.|+ +++.+++++++ +++||||||||++|++|++..+.. .+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~------------------------------~~~ 49 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL------------------------------RRL 49 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH------------------------------TTC
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh------------------------------cCC
Confidence 6778999985 79999988875 999999999999999999876654 245
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEE
Q psy9399 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178 (453)
Q Consensus 99 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIi 178 (453)
+++|++||++|+.|+.+.+.. +.+......... ....+..|.++|++.+.+.+... ..+.++++||+
T Consensus 50 ~~lvl~Ptr~La~Q~~~~l~g-------~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iVi 116 (451)
T 2jlq_A 50 RTLILAPTRVVAAEMEEALRG-------LPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVM 116 (451)
T ss_dssp CEEEEESSHHHHHHHHHHTTT-------SCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEE
T ss_pred cEEEECCCHHHHHHHHHHhcC-------ceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEE
Confidence 899999999999999987752 222211111110 12235579999999998877654 35789999999
Q ss_pred echhhhcccCChHHHHHHHh-hCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccccccceEEEEEEcchhhHH
Q psy9399 179 DEADRMLDMGFINDIEKIVD-ATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKN 257 (453)
Q Consensus 179 DE~h~~~~~~~~~~~~~~~~-~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (453)
||+|++ +..+...+..+.. ..+...|++++|||++..... .....+..+........ ... ..
T Consensus 117 DEah~~-~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~---~~~~~~~~~~~~~~~p~-~~~----------~~-- 179 (451)
T 2jlq_A 117 DEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDP---FPQSNSPIEDIEREIPE-RSW----------NT-- 179 (451)
T ss_dssp ETTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCS---SCCCSSCEEEEECCCCS-SCC----------SS--
T ss_pred eCCccC-CcchHHHHHHHHHhhcCCCceEEEEccCCCccchh---hhcCCCceEecCccCCc-hhh----------HH--
Confidence 999976 3332222222222 234568999999999763221 12233333322210000 000 00
Q ss_pred HHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCC
Q psy9399 258 RLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPA 337 (453)
Q Consensus 258 ~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~ 337 (453)
....+ .. ..+++||||++++.++.+++.|+..++.+..+|+++ +.++++.|++|+.+|||||+++++|+|+|+
T Consensus 180 -~~~~l-~~-~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~~g~~~vLVaT~v~~~GiDip~ 252 (451)
T 2jlq_A 180 -GFDWI-TD-YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTKLTDWDFVVTTDISEMGANFRA 252 (451)
T ss_dssp -SCHHH-HH-CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGGSSCCSEEEECGGGGSSCCCCC
T ss_pred -HHHHH-Hh-CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhccCCceEEEECCHHHhCcCCCC
Confidence 11112 22 246999999999999999999999999999999985 457899999999999999999999999999
Q ss_pred CcEEEEcC--------------------CCCChhHHHHHhhhccCCCC-CccEEEEeChh
Q psy9399 338 ITHVFNYD--------------------LPKFPEDYVHRIGRTGRAGR-NGFAVSLVNHA 376 (453)
Q Consensus 338 ~~~Vi~~~--------------------~~~~~~~~~Q~~GR~~R~g~-~g~~~~~~~~~ 376 (453)
++||+++ .|.+..+|+||+||+||.|. .|.+++++...
T Consensus 253 -~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~ 311 (451)
T 2jlq_A 253 -GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDP 311 (451)
T ss_dssp -SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred -CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCCc
Confidence 9999998 89999999999999999998 78888887543
No 45
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=2.3e-38 Score=327.51 Aligned_cols=333 Identities=17% Similarity=0.209 Sum_probs=239.7
Q ss_pred CCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccc
Q psy9399 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISG-RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQN 80 (453)
Q Consensus 2 ~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~-~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 80 (453)
+|+++++++.+.+.+...+ ..|++.|+++++.++.+ ++++++||||||||+ ++|++.......
T Consensus 73 ~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~------------- 136 (773)
T 2xau_A 73 PFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMP------------- 136 (773)
T ss_dssp TTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCG-------------
T ss_pred CccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccc-------------
Confidence 6999999999999999888 67999999988887754 679999999999998 444442111100
Q ss_pred cccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHH
Q psy9399 81 NNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~ 160 (453)
...+.++++++|+++|+.|+.+.+...........+........ ......+|+++|++++.
T Consensus 137 -------------~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~ 197 (773)
T 2xau_A 137 -------------HLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLL 197 (773)
T ss_dssp -------------GGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHH
T ss_pred -------------cCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHH
Confidence 11245799999999999999887765432111112221111111 11246789999999999
Q ss_pred HHHhcCCCCCCCccEEEEechhh-hcccCC-hHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEeccccc
Q psy9399 161 DHMNSGKINFSHLQILVLDEADR-MLDMGF-INDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238 (453)
Q Consensus 161 ~~l~~~~~~~~~~~~iIiDE~h~-~~~~~~-~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (453)
+.+.... .+.++++||+||+|. .++... ...+..+.... ...+++++|||++. ..+.. ++.....+......
T Consensus 198 r~l~~~~-~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~--~~l~~-~~~~~~vi~v~gr~- 271 (773)
T 2xau_A 198 REAMEDH-DLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDA--EKFQR-YFNDAPLLAVPGRT- 271 (773)
T ss_dssp HHHHHST-TCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCC--HHHHH-HTTSCCEEECCCCC-
T ss_pred HHHhhCc-cccCCCEEEecCccccccchHHHHHHHHHHHHhC-CCceEEEEeccccH--HHHHH-HhcCCCcccccCcc-
Confidence 8776643 578999999999995 444332 23334444333 46789999999964 34444 34443334433211
Q ss_pred ccccceEEEEEEcchhhHHH---HHHHHHhhCCCCcEEEEeccchhHHHHHHHHhh-----------CCCceeecCCCCC
Q psy9399 239 KQKNITQSILFVDDILHKNR---LLDYLLRDKRVGQAVVFTATKRDADIIADRLNI-----------SGFLAAPLHGDLH 304 (453)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~-----------~~~~~~~~~~~~~ 304 (453)
..+.+.+........... .+..+.....++++||||+++++++.+++.|.. .++.+..+||+++
T Consensus 272 --~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~ 349 (773)
T 2xau_A 272 --YPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLP 349 (773)
T ss_dssp --CCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCC
T ss_pred --cceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCC
Confidence 223333222222222222 233334445678999999999999999999975 5778999999999
Q ss_pred HHHHHHHHHHHh-----cCCccEEEEeCCcccCCCCCCCcEEEEcCC------------------CCChhHHHHHhhhcc
Q psy9399 305 QNARNRTLENLR-----RGRIKILVATDVAARGIDVPAITHVFNYDL------------------PKFPEDYVHRIGRTG 361 (453)
Q Consensus 305 ~~~r~~~~~~f~-----~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~------------------~~~~~~~~Q~~GR~~ 361 (453)
+.+|.++++.|+ +|..+|||||+++++|+|+|++++||+++. |.+..+|.||+||||
T Consensus 350 ~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaG 429 (773)
T 2xau_A 350 PHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAG 429 (773)
T ss_dssp HHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGG
T ss_pred HHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccC
Confidence 999999999999 999999999999999999999999999887 889999999999999
Q ss_pred CCCCCccEEEEeChhhH
Q psy9399 362 RAGRNGFAVSLVNHAER 378 (453)
Q Consensus 362 R~g~~g~~~~~~~~~~~ 378 (453)
|. .+|.|+.++++.+.
T Consensus 430 R~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 430 RT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp SS-SSEEEEESSCHHHH
T ss_pred CC-CCCEEEEEecHHHh
Confidence 99 88999999987653
No 46
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=4.1e-39 Score=321.99 Aligned_cols=288 Identities=22% Similarity=0.258 Sum_probs=214.1
Q ss_pred CcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEE
Q psy9399 24 PTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVL 103 (453)
Q Consensus 24 ~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 103 (453)
+..+|+++++.+.+++++++.||||||||.++.+++++. +.+++|+
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~----------------------------------g~~vLVl 263 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ----------------------------------GYKVLVL 263 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT----------------------------------TCCEEEE
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC----------------------------------CCeEEEE
Confidence 556676777777788889999999999999999888762 3489999
Q ss_pred cCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEechhh
Q psy9399 104 TPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADR 183 (453)
Q Consensus 104 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h~ 183 (453)
+|+++|+.|+++.+.+... ..+....|+.. ...+++|+|+||++| +....+.+.++++||+||+|+
T Consensus 264 ~PTReLA~Qia~~l~~~~g----~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~ 329 (666)
T 3o8b_A 264 NPSVAATLGFGAYMSKAHG----IDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHS 329 (666)
T ss_dssp ESCHHHHHHHHHHHHHHHS----CCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTC
T ss_pred cchHHHHHHHHHHHHHHhC----CCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchh
Confidence 9999999999988776542 44555566543 345789999999998 455566778899999999975
Q ss_pred hcccCChHHHHHHHhhCCCCcc--EEEEEeecChHHHHHHHhhcCCCeEEEecccccccccceEEEEEEcchhhHHHHHH
Q psy9399 184 MLDMGFINDIEKIVDATPVTRQ--TMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLD 261 (453)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~--~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (453)
.+.++...+..++..++...+ ++++|||++..+. ...+.......... ..+ . .......
T Consensus 330 -l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~i~------~~~p~i~~v~~~~~--~~i-~---~~~~~~~------ 390 (666)
T 3o8b_A 330 -TDSTTILGIGTVLDQAETAGARLVVLATATPPGSVT------VPHPNIEEVALSNT--GEI-P---FYGKAIP------ 390 (666)
T ss_dssp -CSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTTCCC------CCCTTEEEEECBSC--SSE-E---ETTEEEC------
T ss_pred -cCccHHHHHHHHHHhhhhcCCceEEEECCCCCcccc------cCCcceEEEeeccc--chh-H---HHHhhhh------
Confidence 456677778888888877666 7888999986311 11222111110000 000 0 0000000
Q ss_pred HHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEE
Q psy9399 262 YLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHV 341 (453)
Q Consensus 262 ~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~V 341 (453)
+....++++||||++++.++.+++.|++.++.+..+||++++.+ |+++..+|||||+++++|+|+| +++|
T Consensus 391 --l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~V 460 (666)
T 3o8b_A 391 --IEAIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSV 460 (666)
T ss_dssp --GGGSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEE
T ss_pred --hhhccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEE
Confidence 12335689999999999999999999999999999999999874 4566779999999999999997 9998
Q ss_pred E----------EcC-----------CCCChhHHHHHhhhccCCCCCccEEEEeChhhHHH--H--HHHHHHhhc
Q psy9399 342 F----------NYD-----------LPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMN--I--KKIERFTKQ 390 (453)
Q Consensus 342 i----------~~~-----------~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~--~--~~~~~~~~~ 390 (453)
| ++| .|.+..+|+||+||+|| |+.|. +.|+++.+... + ..+.+..+.
T Consensus 461 I~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~~ 532 (666)
T 3o8b_A 461 IDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYDA 532 (666)
T ss_dssp EECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHHH
T ss_pred EecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhcC
Confidence 8 566 88999999999999999 88999 88888766543 2 444444443
No 47
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=8.8e-40 Score=319.28 Aligned_cols=287 Identities=20% Similarity=0.209 Sum_probs=189.8
Q ss_pred HHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHH
Q psy9399 34 AAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQV 113 (453)
Q Consensus 34 ~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 113 (453)
.++++++++++||||||||++|++|++..+.. .+.+++|++||++|+.|+
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~------------------------------~~~~~lil~Ptr~La~Q~ 53 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR------------------------------RRLRTLVLAPTRVVLSEM 53 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH------------------------------TTCCEEEEESSHHHHHHH
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh------------------------------cCCeEEEEcchHHHHHHH
Confidence 45678999999999999999999999987654 245899999999999999
Q ss_pred HHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEechhhhcccCChHHH
Q psy9399 114 TAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDI 193 (453)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~ 193 (453)
.+.+..+. +....+.... .-..+.-+-..+.+.+...+. ....+.+++++|+||+|++ +.++...+
T Consensus 54 ~~~l~~~~-------v~~~~~~~~~-----v~Tp~~l~~~l~~~~l~~~~~-~~~~~~~l~~vViDEah~~-~~~~~~~~ 119 (440)
T 1yks_A 54 KEAFHGLD-------VKFHTQAFSA-----HGSGREVIDAMCHATLTYRML-EPTRVVNWEVIIMDEAHFL-DPASIAAR 119 (440)
T ss_dssp HHHTTTSC-------EEEESSCCCC-----CCCSSCCEEEEEHHHHHHHHT-SSSCCCCCSEEEETTTTCC-SHHHHHHH
T ss_pred HHHHhcCC-------eEEeccccee-----ccCCccceeeecccchhHhhh-CcccccCccEEEEECcccc-CcchHHHH
Confidence 98877432 2211111000 000111122333333433322 2235789999999999998 33322222
Q ss_pred HHHHhhC-CCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccccccceEEEEEEcchhhHHHHHHHHHhhCCCCcE
Q psy9399 194 EKIVDAT-PVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQA 272 (453)
Q Consensus 194 ~~~~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 272 (453)
..+.... +...|++++|||+++....+... ..+...... .... ......+..+.+ .++++
T Consensus 120 ~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~--~~~~~~~~~--------------~~~~-~~~~~~~~~l~~--~~~~~ 180 (440)
T 1yks_A 120 GWAAHRARANESATILMTATPPGTSDEFPHS--NGEIEDVQT--------------DIPS-EPWNTGHDWILA--DKRPT 180 (440)
T ss_dssp HHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCEEEEEC--------------CCCS-SCCSSSCHHHHH--CCSCE
T ss_pred HHHHHHhccCCceEEEEeCCCCchhhhhhhc--CCCeeEeee--------------ccCh-HHHHHHHHHHHh--cCCCE
Confidence 2222222 35689999999997643221110 011110000 0000 011112223333 25799
Q ss_pred EEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEE---------
Q psy9399 273 VVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFN--------- 343 (453)
Q Consensus 273 lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~--------- 343 (453)
||||++++.++.+++.|+..++.+..+||+ +|..+++.|++|+.+|||||+++++|+|+| +++||+
T Consensus 181 lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~----~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~ 255 (440)
T 1yks_A 181 AWFLPSIRAANVMAASLRKAGKSVVVLNRK----TFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVL 255 (440)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCCEEECCSS----SCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHcCCCEEEecch----hHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeee
Confidence 999999999999999999999999999993 588999999999999999999999999999 999986
Q ss_pred ----------cCCCCChhHHHHHhhhccCC-CCCccEEEEe---ChhhHHHHHHHHHHh
Q psy9399 344 ----------YDLPKFPEDYVHRIGRTGRA-GRNGFAVSLV---NHAERMNIKKIERFT 388 (453)
Q Consensus 344 ----------~~~~~~~~~~~Q~~GR~~R~-g~~g~~~~~~---~~~~~~~~~~~~~~~ 388 (453)
++.|.+..+|.||+||+||. |..|.+++++ ++.+...+..++..+
T Consensus 256 ~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 256 VDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp ETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred cccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 88899999999999999997 6789999996 566666666666543
No 48
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=3.5e-38 Score=320.21 Aligned_cols=297 Identities=18% Similarity=0.235 Sum_probs=209.6
Q ss_pred CCcHHHH-----HHHHHHh------cCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhc
Q psy9399 23 KPTGVQE-----QAIPAAI------SGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERL 91 (453)
Q Consensus 23 ~~~~~Q~-----~~~~~~~------~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (453)
.|+++|+ ++++.++ ++++++++||||||||++|++|++..+..
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-------------------------- 268 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-------------------------- 268 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH--------------------------
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh--------------------------
Confidence 7999999 9999988 88999999999999999999999987654
Q ss_pred ccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCC
Q psy9399 92 RFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFS 171 (453)
Q Consensus 92 ~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~ 171 (453)
.+.+++|++||++|+.|+.+.+..+. +. ...+... .....+.-+-+.+.+.+.+.+... ..+.
T Consensus 269 ----~~~~~lilaPTr~La~Q~~~~l~~~~-----i~--~~~~~l~-----~v~tp~~ll~~l~~~~l~~~l~~~-~~l~ 331 (673)
T 2wv9_A 269 ----KRLRTAVLAPTRVVAAEMAEALRGLP-----VR--YLTPAVQ-----REHSGNEIVDVMCHATLTHRLMSP-LRVP 331 (673)
T ss_dssp ----TTCCEEEEESSHHHHHHHHHHTTTSC-----CE--ECCC--------CCCCSCCCEEEEEHHHHHHHHHSS-SCCC
T ss_pred ----CCCcEEEEccHHHHHHHHHHHHhcCC-----ee--eeccccc-----ccCCHHHHHHHHHhhhhHHHHhcc-cccc
Confidence 24589999999999999998877542 11 1111000 011122345566666666655554 4688
Q ss_pred CccEEEEechhhhcccCChHHHHHHHhhC-CCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccccccceEEEEEE
Q psy9399 172 HLQILVLDEADRMLDMGFINDIEKIVDAT-PVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFV 250 (453)
Q Consensus 172 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (453)
++++||+||+|++ +..+...+..+.... +...|++++|||++..+..+.. .......... ..
T Consensus 332 ~l~lvViDEaH~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~---~~~~i~~v~~-------------~~ 394 (673)
T 2wv9_A 332 NYNLFVMDEAHFT-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPD---TNSPVHDVSS-------------EI 394 (673)
T ss_dssp CCSEEEEESTTCC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCC---CSSCEEEEEC-------------CC
T ss_pred cceEEEEeCCccc-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhcc---cCCceEEEee-------------ec
Confidence 9999999999987 221222222333332 2567999999999754321111 0111111100 00
Q ss_pred cchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcc
Q psy9399 251 DDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAA 330 (453)
Q Consensus 251 ~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~ 330 (453)
.. ......+..+.+ .++++||||++++.++.+++.|+..++.+..+||+ +|.++++.|++|+.+|||||++++
T Consensus 395 ~~-~~~~~~l~~l~~--~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e 467 (673)
T 2wv9_A 395 PD-RAWSSGFEWITD--YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISE 467 (673)
T ss_dssp CS-SCCSSCCHHHHS--CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGG
T ss_pred CH-HHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhh
Confidence 00 011112223332 46799999999999999999999999999999994 789999999999999999999999
Q ss_pred cCCCCCCCcEEEE--------------------cCCCCChhHHHHHhhhccCC-CCCccEEEEe---ChhhHHHHHHHHH
Q psy9399 331 RGIDVPAITHVFN--------------------YDLPKFPEDYVHRIGRTGRA-GRNGFAVSLV---NHAERMNIKKIER 386 (453)
Q Consensus 331 ~Gvdi~~~~~Vi~--------------------~~~~~~~~~~~Q~~GR~~R~-g~~g~~~~~~---~~~~~~~~~~~~~ 386 (453)
+|+|+| +++||+ ++.|.+..+|.||+||+||. |+.|.+++++ ++.+...+..++.
T Consensus 468 ~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~ 546 (673)
T 2wv9_A 468 MGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEA 546 (673)
T ss_dssp TTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHH
T ss_pred cceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHH
Confidence 999999 999997 56889999999999999999 7889999996 4555555555554
Q ss_pred H
Q psy9399 387 F 387 (453)
Q Consensus 387 ~ 387 (453)
.
T Consensus 547 ~ 547 (673)
T 2wv9_A 547 K 547 (673)
T ss_dssp H
T ss_pred H
Confidence 3
No 49
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=7e-37 Score=311.59 Aligned_cols=305 Identities=17% Similarity=0.221 Sum_probs=185.4
Q ss_pred CCcHHHHHHHHHHhc----C-CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCC
Q psy9399 23 KPTGVQEQAIPAAIS----G-RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ 97 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~~----~-~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (453)
.|+++|.++++.+++ + +++++++|||+|||++++..+...+...-.. .....+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~----------------------~~~~~~ 235 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNR----------------------TGDYRK 235 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCS----------------------SCSSSC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhccccc----------------------ccccCC
Confidence 699999999999875 4 5699999999999998766555444331000 001145
Q ss_pred ceEEEEcCcHHHHHHHH-HHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhc----CCCCCCC
Q psy9399 98 PRMLVLTPTRELALQVT-AATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNS----GKINFSH 172 (453)
Q Consensus 98 ~~~lil~P~~~L~~q~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~----~~~~~~~ 172 (453)
.++||++|+++|+.|+. +.+..++. ....+.++ ....+.+|+|+|++.|...... ..+....
T Consensus 236 ~~vlil~P~~~L~~Q~~~~~~~~~~~-----~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~ 302 (590)
T 3h1t_A 236 PRILFLADRNVLVDDPKDKTFTPFGD-----ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDF 302 (590)
T ss_dssp CCEEEEEC-----------CCTTTCS-----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTS
T ss_pred CeEEEEeCCHHHHHHHHHHHHHhcch-----hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCc
Confidence 69999999999999998 77766542 22233322 1234679999999999876542 2234567
Q ss_pred ccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEE-----------------Eecc
Q psy9399 173 LQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLIL-----------------KVNS 235 (453)
Q Consensus 173 ~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~-----------------~~~~ 235 (453)
+++||+||||++.+.. ...+..++..++. .+++++||||..........+++.+... ....
T Consensus 303 ~~lvIiDEaH~~~~~~-~~~~~~il~~~~~-~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~ 380 (590)
T 3h1t_A 303 FDLIIIDECHRGSARD-NSNWREILEYFEP-AFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVI 380 (590)
T ss_dssp CSEEEESCCC----------CHHHHHHSTT-SEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEE
T ss_pred cCEEEEECCccccccc-hHHHHHHHHhCCc-ceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEee
Confidence 8999999999987643 2344556666653 5799999998743222222222222111 1000
Q ss_pred ccccccc--------------ceEEEEEEcchh-------hHHHH---HHHHHh-hCCCCcEEEEeccchhHHHHHHHHh
Q psy9399 236 IEKKQKN--------------ITQSILFVDDIL-------HKNRL---LDYLLR-DKRVGQAVVFTATKRDADIIADRLN 290 (453)
Q Consensus 236 ~~~~~~~--------------~~~~~~~~~~~~-------~~~~~---~~~l~~-~~~~~~~lvf~~~~~~~~~l~~~L~ 290 (453)
....... +........... ....+ +...+. ....+++||||+++++|+.+++.|.
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~ 460 (590)
T 3h1t_A 381 SEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALN 460 (590)
T ss_dssp ETTCC-----------------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHH
T ss_pred eeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHH
Confidence 0000000 000000000000 00111 111222 3455799999999999999999997
Q ss_pred hCCC--------ceeecCCCCCHHHHHHHHHHHhcCCcc---EEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhh
Q psy9399 291 ISGF--------LAAPLHGDLHQNARNRTLENLRRGRIK---ILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359 (453)
Q Consensus 291 ~~~~--------~~~~~~~~~~~~~r~~~~~~f~~g~~~---vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR 359 (453)
..+. .+..+||+++. +|..+++.|++|+.+ |||||+++++|+|+|++++||+++++++...|.|++||
T Consensus 461 ~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR 539 (590)
T 3h1t_A 461 NLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGR 539 (590)
T ss_dssp HHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTT
T ss_pred HhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhh
Confidence 6543 26788998764 799999999998866 88999999999999999999999999999999999999
Q ss_pred ccCCCC
Q psy9399 360 TGRAGR 365 (453)
Q Consensus 360 ~~R~g~ 365 (453)
++|.+.
T Consensus 540 ~~R~~~ 545 (590)
T 3h1t_A 540 GTRLRE 545 (590)
T ss_dssp SCCCBG
T ss_pred hcccCc
Confidence 999875
No 50
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=2.4e-36 Score=294.42 Aligned_cols=269 Identities=15% Similarity=0.191 Sum_probs=188.4
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHH
Q psy9399 37 SGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~ 116 (453)
++++++++||||||||++|++++++.+.. .+.+++|++||++|+.|+.+.
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~------------------------------~g~~~lvl~Pt~~La~Q~~~~ 50 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK------------------------------KRLRTVILAPTRVVASEMYEA 50 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH------------------------------TTCCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh------------------------------CCCCEEEECcHHHHHHHHHHH
Confidence 36789999999999999999999866544 245899999999999999877
Q ss_pred HHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEechhhhcccCChHHHHHH
Q psy9399 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKI 196 (453)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~ 196 (453)
+. .+.+....++.. .....+..+.+.|.+.+.+.+.. ...+.++++||+||+|++ +..+......+
T Consensus 51 ~~-------~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l 116 (431)
T 2v6i_A 51 LR-------GEPIRYMTPAVQ-----SERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYI 116 (431)
T ss_dssp TT-------TSCEEEC--------------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHH
T ss_pred hC-------CCeEEEEecCcc-----ccCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHH
Confidence 65 234444433321 11122456778888888776666 445889999999999987 32222333333
Q ss_pred Hhh-CCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccccccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEE
Q psy9399 197 VDA-TPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVF 275 (453)
Q Consensus 197 ~~~-~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf 275 (453)
... .+...+++++|||+++.+..+.. ..+....... .... .....++.. +.. .+++++||
T Consensus 117 ~~~~~~~~~~~l~~SAT~~~~~~~~~~---~~~~i~~~~~-------------~~~~-~~~~~~~~~-l~~-~~~~~lVF 177 (431)
T 2v6i_A 117 ETRVSMGDAGAIFMTATPPGTTEAFPP---SNSPIIDEET-------------RIPD-KAWNSGYEW-ITE-FDGRTVWF 177 (431)
T ss_dssp HHHHHTTSCEEEEEESSCTTCCCSSCC---CSSCCEEEEC-------------CCCS-SCCSSCCHH-HHS-CSSCEEEE
T ss_pred HHHhhCCCCcEEEEeCCCCcchhhhcC---CCCceeeccc-------------cCCH-HHHHHHHHH-HHc-CCCCEEEE
Confidence 332 24578999999999863221110 0111111100 0000 000111222 222 25689999
Q ss_pred eccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcE---------------
Q psy9399 276 TATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITH--------------- 340 (453)
Q Consensus 276 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~--------------- 340 (453)
|++++.++.+++.|+..+..+..+||+ +|..+++.|++|+.+|||||+++++|+|+| +.+
T Consensus 178 ~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~ 252 (431)
T 2v6i_A 178 VHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDG 252 (431)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETT
T ss_pred eCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceeccc
Confidence 999999999999999999999999997 578899999999999999999999999999 544
Q ss_pred --EEEcCCCCChhHHHHHhhhccCCCCC-ccEEEEe
Q psy9399 341 --VFNYDLPKFPEDYVHRIGRTGRAGRN-GFAVSLV 373 (453)
Q Consensus 341 --Vi~~~~~~~~~~~~Q~~GR~~R~g~~-g~~~~~~ 373 (453)
||+++.|.+..+|.||+||+||.|.. |.++++.
T Consensus 253 ~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 253 RVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp EEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred ceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 57788999999999999999999854 5555555
No 51
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1.4e-37 Score=305.53 Aligned_cols=273 Identities=18% Similarity=0.228 Sum_probs=193.3
Q ss_pred HHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHH
Q psy9399 32 IPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELAL 111 (453)
Q Consensus 32 ~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~ 111 (453)
...+.++++++++||||||||++|++|++..+.. .+.++||++|+++|+.
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~------------------------------~~~~~lvl~Ptr~La~ 64 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ------------------------------QRLRTAVLAPTRVVAA 64 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH------------------------------TTCCEEEEECSHHHHH
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh------------------------------CCCcEEEECchHHHHH
Confidence 3445667889999999999999999999987654 2458999999999999
Q ss_pred HHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEechhhh-----cc
Q psy9399 112 QVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRM-----LD 186 (453)
Q Consensus 112 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h~~-----~~ 186 (453)
|+.+.+.. +.+....+... .....+..+.++|.+.+...+... ..+.++++||+||+|++ ..
T Consensus 65 Q~~~~l~g-------~~v~~~~~~~~-----~~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~ 131 (459)
T 2z83_A 65 EMAEALRG-------LPVRYQTSAVQ-----REHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAA 131 (459)
T ss_dssp HHHHHTTT-------SCEEECC-------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHH
T ss_pred HHHHHhcC-------ceEeEEecccc-----cCCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHH
Confidence 99988762 22221111111 001234567888988887766654 35789999999999973 33
Q ss_pred cCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccccccceEEEEEEcchhhHHHHHHHHHhh
Q psy9399 187 MGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRD 266 (453)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 266 (453)
.++.... ..+...|++++|||++..+..+.. ...|........+. . .... .+.. +..
T Consensus 132 ~~~~~~~-----~~~~~~~~il~SAT~~~~~~~~~~--~~~pi~~~~~~~~~--~----------~~~~---~~~~-l~~ 188 (459)
T 2z83_A 132 RGYIATK-----VELGEAAAIFMTATPPGTTDPFPD--SNAPIHDLQDEIPD--R----------AWSS---GYEW-ITE 188 (459)
T ss_dssp HHHHHHH-----HHTTSCEEEEECSSCTTCCCSSCC--CSSCEEEEECCCCS--S----------CCSS---CCHH-HHH
T ss_pred HHHHHHH-----hccCCccEEEEEcCCCcchhhhcc--CCCCeEEecccCCc--c----------hhHH---HHHH-HHh
Confidence 3322221 123567999999999864322111 11222211110000 0 0000 1111 222
Q ss_pred CCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEE---
Q psy9399 267 KRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFN--- 343 (453)
Q Consensus 267 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~--- 343 (453)
. ++++||||++++.++.+++.|+..++.+..+|++ +|..+++.|++|+.+|||||+++++|+|+|+ ++||+
T Consensus 189 ~-~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~ 262 (459)
T 2z83_A 189 Y-AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRK 262 (459)
T ss_dssp C-CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCE
T ss_pred c-CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCc
Confidence 2 5799999999999999999999999999999995 6788999999999999999999999999999 99998
Q ss_pred -----------------cCCCCChhHHHHHhhhccCCCC-CccEEEEeChh
Q psy9399 344 -----------------YDLPKFPEDYVHRIGRTGRAGR-NGFAVSLVNHA 376 (453)
Q Consensus 344 -----------------~~~~~~~~~~~Q~~GR~~R~g~-~g~~~~~~~~~ 376 (453)
++.|.+..+|+||+||+||.|. .|.+++++...
T Consensus 263 ~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 263 SVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp ECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 6799999999999999999997 89999998775
No 52
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=3e-35 Score=265.22 Aligned_cols=211 Identities=41% Similarity=0.608 Sum_probs=190.7
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQN 80 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 80 (453)
.+|+++++++.+.+.+.++|+..|+++|.++++.++++++++++||||+|||++|++|++..+......
T Consensus 29 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~----------- 97 (242)
T 3fe2_A 29 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFL----------- 97 (242)
T ss_dssp SSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCC-----------
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhcccc-----------
Confidence 479999999999999999999999999999999999999999999999999999999999887652210
Q ss_pred cccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHH
Q psy9399 81 NNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~ 160 (453)
....++++||++|+++|+.|+.+.+.++....+ +.+..++||.........+..+++|+|+||++|.
T Consensus 98 ------------~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~ 164 (242)
T 3fe2_A 98 ------------ERGDGPICLVLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLI 164 (242)
T ss_dssp ------------CTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHH
T ss_pred ------------ccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcC-ceEEEEECCCChHHHHHHhcCCCCEEEECHHHHH
Confidence 022466899999999999999999999876665 8889999999988888877788999999999999
Q ss_pred HHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecc
Q psy9399 161 DHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNS 235 (453)
Q Consensus 161 ~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 235 (453)
+.+..+...+.+++++|+||+|++.+++|...+..++..++...|++++|||+++.+..+...++.+|..+.+..
T Consensus 165 ~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 239 (242)
T 3fe2_A 165 DFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 239 (242)
T ss_dssp HHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC
T ss_pred HHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 999888888899999999999999999999999999999999999999999999999999999999998887754
No 53
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=5.3e-35 Score=257.29 Aligned_cols=203 Identities=32% Similarity=0.574 Sum_probs=185.0
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQN 80 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 80 (453)
++|+++++++.+.+.|..+|+..|+++|.++++.+++++++++.+|||+|||++|++|++..+..
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~--------------- 67 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL--------------- 67 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT---------------
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcc---------------
Confidence 47999999999999999999999999999999999999999999999999999999999987654
Q ss_pred cccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHH
Q psy9399 81 NNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~ 160 (453)
...+.+++|++|+++|+.|+.+.+.++....+.+.+...+|+............+++|+|+||+++.
T Consensus 68 -------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~ 134 (206)
T 1vec_A 68 -------------KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRIL 134 (206)
T ss_dssp -------------TSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHH
T ss_pred -------------cCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHH
Confidence 2245689999999999999999999988766568888999999888777777788999999999999
Q ss_pred HHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEE
Q psy9399 161 DHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLIL 231 (453)
Q Consensus 161 ~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~ 231 (453)
..+..+...+.+++++|+||+|++.+.++...+..+...++...|++++|||+++.+..+...++.+|..+
T Consensus 135 ~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 135 DLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred HHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 99988877889999999999999999999999999999999889999999999999999999888888654
No 54
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=1e-35 Score=315.76 Aligned_cols=334 Identities=16% Similarity=0.145 Sum_probs=229.5
Q ss_pred CCcHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceE
Q psy9399 23 KPTGVQEQAIPAAISG--RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRM 100 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~~~--~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (453)
.|+|+|.+++..++.. .+++++++||+|||++++..+...+..+ ...++
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g-----------------------------~~~rv 203 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG-----------------------------AAERV 203 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS-----------------------------SCCCE
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC-----------------------------CCCeE
Confidence 6899999999998864 4699999999999999888777665542 23489
Q ss_pred EEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHH---hcCCCCEEEeChHHHHHHHhc-CCCCCCCccEE
Q psy9399 101 LVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQL---LSRNPEILLATPGRLIDHMNS-GKINFSHLQIL 176 (453)
Q Consensus 101 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ilv~T~~~l~~~l~~-~~~~~~~~~~i 176 (453)
||+||+ +|+.||.+++.++. ++.+..+.++.. ...... .....+|+|+|++.+...... ..+...++++|
T Consensus 204 LIVvP~-sLl~Qw~~E~~~~f----~l~v~v~~~~~~-~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlV 277 (968)
T 3dmq_A 204 LIIVPE-TLQHQWLVEMLRRF----NLRFALFDDERY-AEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLL 277 (968)
T ss_dssp EEECCT-TTHHHHHHHHHHHS----CCCCEECCHHHH-HHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEE
T ss_pred EEEeCH-HHHHHHHHHHHHHh----CCCEEEEccchh-hhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEE
Confidence 999999 99999999997765 245444444322 211111 122568999999988643211 11234578999
Q ss_pred EEechhhhcccCCh--HHHHHHHhhCCCCccEEEEEeecCh----HHHHHHH----------------------------
Q psy9399 177 VLDEADRMLDMGFI--NDIEKIVDATPVTRQTMLFSATLDG----IVGNMAE---------------------------- 222 (453)
Q Consensus 177 IiDE~h~~~~~~~~--~~~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~---------------------------- 222 (453)
|+||+|++.+.... .....+........+++++||||.. .+..+..
T Consensus 278 IvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~ 357 (968)
T 3dmq_A 278 VVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVA 357 (968)
T ss_dssp EECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHH
T ss_pred EehhhHhhcCCCCcchHHHHHHHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHH
Confidence 99999999765522 1122222222344569999999842 0000000
Q ss_pred hhcCC----------------------------------------------------CeEEEecc--cccccc-cceEEE
Q psy9399 223 NITKD----------------------------------------------------PLILKVNS--IEKKQK-NITQSI 247 (453)
Q Consensus 223 ~~~~~----------------------------------------------------~~~~~~~~--~~~~~~-~~~~~~ 247 (453)
..... ...+.... ...... ......
T Consensus 358 ~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~ 437 (968)
T 3dmq_A 358 MLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK 437 (968)
T ss_dssp TTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEE
T ss_pred HHhccCCCCHHHHHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeee
Confidence 00000 00000000 000000 000000
Q ss_pred E--------------------------------------------EEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHH
Q psy9399 248 L--------------------------------------------FVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDAD 283 (453)
Q Consensus 248 ~--------------------------------------------~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~ 283 (453)
. .......+...+..++....+++++|||+++..++
T Consensus 438 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~ 517 (968)
T 3dmq_A 438 LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATAL 517 (968)
T ss_dssp ECCCHHHHHHHHHHHHTTCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHH
T ss_pred cCCCHHHHHHHHHHhhhhhhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHH
Confidence 0 01122345666777777777889999999999999
Q ss_pred HHHHHHhh-CCCceeecCCCCCHHHHHHHHHHHhcCC--ccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhc
Q psy9399 284 IIADRLNI-SGFLAAPLHGDLHQNARNRTLENLRRGR--IKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360 (453)
Q Consensus 284 ~l~~~L~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~ 360 (453)
.+++.|.. .|+.+..+||+|+..+|..+++.|++|+ ++|||||+++++|+|+|++++||++|+|+++..|.|++||+
T Consensus 518 ~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~ 597 (968)
T 3dmq_A 518 QLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRL 597 (968)
T ss_dssp HHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhcc
Confidence 99999995 5999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred cCCCCCccEEEEeChhhHHHHHHHHHHhhcC
Q psy9399 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQ 391 (453)
Q Consensus 361 ~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 391 (453)
||.|+.+.++++....+....+.+.+.+...
T Consensus 598 ~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k 628 (968)
T 3dmq_A 598 DRIGQAHDIQIHVPYLEKTAQSVLVRWYHEG 628 (968)
T ss_dssp SCSSSCSCCEEEEEEETTSHHHHHHHHHHHT
T ss_pred ccCCCCceEEEEEecCCChHHHHHHHHHHhC
Confidence 9999998777665554444445555565433
No 55
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=4.6e-35 Score=260.02 Aligned_cols=207 Identities=32% Similarity=0.572 Sum_probs=184.2
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQN 80 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 80 (453)
++|+++++++.+.+++.++|+..|+++|.++++.+++++++++++|||+|||++|++|++..+..
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~--------------- 68 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP--------------- 68 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT---------------
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh---------------
Confidence 58999999999999999999999999999999999999999999999999999999999988764
Q ss_pred cccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccC---CeeEEEEECCCchHHHHHHhcCCCCEEEeChH
Q psy9399 81 NNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMK---KIKAISILGGMPYLRQMQLLSRNPEILLATPG 157 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~ 157 (453)
...+.++||++|+++|+.|+.+.+.++..... .+.+..++|+.........+..+++|+|+||+
T Consensus 69 -------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~ 135 (219)
T 1q0u_A 69 -------------ERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPG 135 (219)
T ss_dssp -------------TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHH
T ss_pred -------------CcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHH
Confidence 22356899999999999999999999876542 37788888888766655555567899999999
Q ss_pred HHHHHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEecc
Q psy9399 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNS 235 (453)
Q Consensus 158 ~l~~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 235 (453)
++.+.+..+...+.+++++|+||+|++.++++...+..++..++...|++++|||+++.+..+.+.++.+|..+....
T Consensus 136 ~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 136 RINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp HHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred HHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 999999887777899999999999999999999999999999998899999999999999999999999998876654
No 56
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=1.9e-34 Score=260.60 Aligned_cols=204 Identities=42% Similarity=0.693 Sum_probs=185.0
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQN 80 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 80 (453)
.+|+++++++.+.++|..+|+..|+++|.++++.+++++++++.+|||+|||++|++|++..+..
T Consensus 43 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~--------------- 107 (249)
T 3ber_A 43 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLE--------------- 107 (249)
T ss_dssp CCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHH---------------
T ss_pred CCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhc---------------
Confidence 47999999999999999999999999999999999999999999999999999999999988766
Q ss_pred cccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHH
Q psy9399 81 NNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~ 160 (453)
...+.++||++|+++|+.|+.+.++++....+ +.+..++|+.........+..+++|+|+||++|.
T Consensus 108 -------------~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~ 173 (249)
T 3ber_A 108 -------------TPQRLFALVLTPTRELAFQISEQFEALGSSIG-VQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLI 173 (249)
T ss_dssp -------------SCCSSCEEEECSSHHHHHHHHHHHHHHHGGGT-CCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHH
T ss_pred -------------CCCCceEEEEeCCHHHHHHHHHHHHHHhccCC-eeEEEEECCCChHHHHHHhcCCCCEEEECHHHHH
Confidence 23356899999999999999999999876655 7888899998887777777788999999999999
Q ss_pred HHHhc-CCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEe
Q psy9399 161 DHMNS-GKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKV 233 (453)
Q Consensus 161 ~~l~~-~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 233 (453)
+.+.. +...+.+++++|+||+|++.++++...+..++..++...|++++|||++..+..+...++.+|..+.+
T Consensus 174 ~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 174 DHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred HHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 98876 44568899999999999999999999999999999989999999999999999999999999987754
No 57
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=1.6e-34 Score=258.45 Aligned_cols=204 Identities=30% Similarity=0.545 Sum_probs=182.2
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQN 80 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 80 (453)
++|+++++++.+.+.|.++|+..|+++|.++++.+++++++++++|||+|||++|++|++..+..
T Consensus 24 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~--------------- 88 (230)
T 2oxc_A 24 ADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVL--------------- 88 (230)
T ss_dssp CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT---------------
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh---------------
Confidence 47999999999999999999999999999999999999999999999999999999999988754
Q ss_pred cccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHH
Q psy9399 81 NNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~ 160 (453)
...+.++||++|+++|+.|+.+.+.++......+++..++|+.....+...+ .+++|+|+||+++.
T Consensus 89 -------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~ 154 (230)
T 2oxc_A 89 -------------ENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIK 154 (230)
T ss_dssp -------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHH
T ss_pred -------------cCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHH
Confidence 2235689999999999999999999988665558888899988876665554 46899999999999
Q ss_pred HHHhcCCCCCCCccEEEEechhhhcccC-ChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEe
Q psy9399 161 DHMNSGKINFSHLQILVLDEADRMLDMG-FINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKV 233 (453)
Q Consensus 161 ~~l~~~~~~~~~~~~iIiDE~h~~~~~~-~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 233 (453)
+.+..+...+.+++++|+||+|++.+++ |...+..++..++...|++++|||+++.+..+...++.+|..+..
T Consensus 155 ~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 155 QLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp HHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred HHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 9998887778899999999999999987 999999999999989999999999999998888888888877643
No 58
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=1.2e-34 Score=293.45 Aligned_cols=275 Identities=19% Similarity=0.208 Sum_probs=202.8
Q ss_pred HHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHH
Q psy9399 33 PAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQ 112 (453)
Q Consensus 33 ~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q 112 (453)
...+++++++++||||||||..++ ..+.. ..+.+|++|+++|+.|
T Consensus 150 ar~l~rk~vlv~apTGSGKT~~al----~~l~~-------------------------------~~~gl~l~PtR~LA~Q 194 (677)
T 3rc3_A 150 ARAMQRKIIFHSGPTNSGKTYHAI----QKYFS-------------------------------AKSGVYCGPLKLLAHE 194 (677)
T ss_dssp HHTSCCEEEEEECCTTSSHHHHHH----HHHHH-------------------------------SSSEEEEESSHHHHHH
T ss_pred HHhcCCCEEEEEcCCCCCHHHHHH----HHHHh-------------------------------cCCeEEEeCHHHHHHH
Confidence 345678899999999999998333 33332 1245999999999999
Q ss_pred HHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEechhhhcccCChHH
Q psy9399 113 VTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFIND 192 (453)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~ 192 (453)
+++.+.+.+ +.+..++|+..... ..-....+++++|++.+. ....++++|+||+|++.+.+++..
T Consensus 195 i~~~l~~~g-----~~v~lltG~~~~iv--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~ 259 (677)
T 3rc3_A 195 IFEKSNAAG-----VPCDLVTGEERVTV--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWA 259 (677)
T ss_dssp HHHHHHHTT-----CCEEEECSSCEECC--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHH
T ss_pred HHHHHHhcC-----CcEEEEECCeeEEe--cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHH
Confidence 999988863 67788888766410 000113678899876542 246789999999999999999999
Q ss_pred HHHHHhhCC-CCccEEEEEeecChHHHHHHHhhcCCCeEEEecccccccccceEEEEEEcchhhHHHHHHHHHhhCCCCc
Q psy9399 193 IEKIVDATP-VTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQ 271 (453)
Q Consensus 193 ~~~~~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 271 (453)
+..++..++ ...+++++|||.+ .+..+.... .....+....... .. .. ..... . .+.... .+
T Consensus 260 ~~~~l~~l~~~~i~il~~SAT~~-~i~~l~~~~-~~~~~v~~~~r~~---~l---~~-~~~~l------~-~l~~~~-~g 322 (677)
T 3rc3_A 260 WTRALLGLCAEEVHLCGEPAAID-LVMELMYTT-GEEVEVRDYKRLT---PI---SV-LDHAL------E-SLDNLR-PG 322 (677)
T ss_dssp HHHHHHHCCEEEEEEEECGGGHH-HHHHHHHHH-TCCEEEEECCCSS---CE---EE-CSSCC------C-SGGGCC-TT
T ss_pred HHHHHHccCccceEEEeccchHH-HHHHHHHhc-CCceEEEEeeecc---hH---HH-HHHHH------H-HHHhcC-CC
Confidence 998888887 6778999999953 344444332 3333332211000 00 00 00000 0 011122 45
Q ss_pred EEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhc--CCccEEEEeCCcccCCCCCCCcEEEEcCC---
Q psy9399 272 AVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRR--GRIKILVATDVAARGIDVPAITHVFNYDL--- 346 (453)
Q Consensus 272 ~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~--- 346 (453)
.+|||++++.++.+++.|...++.+..+||+|++.+|..+++.|++ |..+|||||+++++|+|+ ++++||+++.
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~ 401 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKP 401 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-
T ss_pred CEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcccc
Confidence 5889999999999999999999999999999999999999999999 889999999999999999 8999999998
Q ss_pred -----------CCChhHHHHHhhhccCCCCC---ccEEEEeCh
Q psy9399 347 -----------PKFPEDYVHRIGRTGRAGRN---GFAVSLVNH 375 (453)
Q Consensus 347 -----------~~~~~~~~Q~~GR~~R~g~~---g~~~~~~~~ 375 (453)
|.+..+|.||+||+||.|.. |.|+.+...
T Consensus 402 ~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 402 SINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp ----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred ccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 77899999999999999865 555555443
No 59
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=4.3e-34 Score=251.69 Aligned_cols=205 Identities=43% Similarity=0.704 Sum_probs=183.3
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQN 80 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 80 (453)
++|+++++++.+.+.|...|+..|+++|.++++.+++++++++.+|||+|||++|+++++..+.....
T Consensus 1 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~------------ 68 (207)
T 2gxq_A 1 MEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQE------------ 68 (207)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC------------
T ss_pred CChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccc------------
Confidence 68999999999999999999999999999999999999999999999999999999999988764210
Q ss_pred cccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHH
Q psy9399 81 NNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~ 160 (453)
...+++++|++|+++|+.|+.+.+.++... +.+..++|+.....+...+..+++|+|+||+++.
T Consensus 69 -------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~ 132 (207)
T 2gxq_A 69 -------------RGRKPRALVLTPTRELALQVASELTAVAPH---LKVVAVYGGTGYGKQKEALLRGADAVVATPGRAL 132 (207)
T ss_dssp -------------TTCCCSEEEECSSHHHHHHHHHHHHHHCTT---SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHH
T ss_pred -------------cCCCCcEEEEECCHHHHHHHHHHHHHHhhc---ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHH
Confidence 123568999999999999999999988643 6778888888877777766678999999999999
Q ss_pred HHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEe
Q psy9399 161 DHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKV 233 (453)
Q Consensus 161 ~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 233 (453)
..+..+...+.+++++|+||+|++.+.++...+..++..++...|++++|||+++.+..+.+.++.+|..+.+
T Consensus 133 ~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 133 DYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred HHHHcCCcchhhceEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 9998887788999999999999999999999999999999989999999999999999999999999887654
No 60
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=1.8e-34 Score=259.17 Aligned_cols=204 Identities=34% Similarity=0.559 Sum_probs=172.9
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQN 80 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 80 (453)
++|+++++++.+.++|..+||..|+++|.++++.+++++++++.+|||+|||++|++|++..+..
T Consensus 30 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~--------------- 94 (237)
T 3bor_A 30 DNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEI--------------- 94 (237)
T ss_dssp CSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCT---------------
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh---------------
Confidence 47999999999999999999999999999999999999999999999999999999999988754
Q ss_pred cccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCC-CCEEEeChHHH
Q psy9399 81 NNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRN-PEILLATPGRL 159 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Ilv~T~~~l 159 (453)
...+.++||++|+++|+.|+.+.+.+++.... +.+....|+.........+..+ ++|+|+||++|
T Consensus 95 -------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l 160 (237)
T 3bor_A 95 -------------EFKETQALVLAPTRELAQQIQKVILALGDYMG-ATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRV 160 (237)
T ss_dssp -------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTT-CCEEEECC-------------CCCSEEEECHHHH
T ss_pred -------------cCCCceEEEEECcHHHHHHHHHHHHHHhhhcC-ceEEEEECCCchHHHHHHHhcCCCCEEEECHHHH
Confidence 22356899999999999999999999876554 7777888887766655555444 89999999999
Q ss_pred HHHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEe
Q psy9399 160 IDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKV 233 (453)
Q Consensus 160 ~~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 233 (453)
.+.+..+...+.++++||+||+|++.++++...+..++..++...|++++|||+++.+..+...++.+|..+.+
T Consensus 161 ~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 161 FDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp HHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred HHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 99998887778899999999999999999999999999999989999999999999999999999998877654
No 61
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=2e-34 Score=261.84 Aligned_cols=223 Identities=35% Similarity=0.607 Sum_probs=185.4
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQN 80 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 80 (453)
++|+++++++.+.++|...|+..|+++|.++++.+++++++++++|||+|||++|++|++..+........
T Consensus 23 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~--------- 93 (253)
T 1wrb_A 23 ENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQ--------- 93 (253)
T ss_dssp CSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------------
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccc---------
Confidence 47999999999999999999999999999999999999999999999999999999999988765321000
Q ss_pred cccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHH
Q psy9399 81 NNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~ 160 (453)
......++++||++|+++|+.|+.+.+.++....+ +.+..++|+.........+..+++|+|+||++|.
T Consensus 94 ----------~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~ 162 (253)
T 1wrb_A 94 ----------RYSKTAYPKCLILAPTRELAIQILSESQKFSLNTP-LRSCVVYGGADTHSQIREVQMGCHLLVATPGRLV 162 (253)
T ss_dssp -------------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSS-CCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHH
T ss_pred ----------cccccCCceEEEEECCHHHHHHHHHHHHHHhccCC-ceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHH
Confidence 00012346899999999999999999999876554 7888899998888877777788999999999999
Q ss_pred HHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhh--CCC--CccEEEEEeecChHHHHHHHhhcCCCeEEEeccc
Q psy9399 161 DHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDA--TPV--TRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236 (453)
Q Consensus 161 ~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~--~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 236 (453)
..+......+.+++++|+||+|++.+++|...+..++.. .+. ..|++++|||+++.+..+...++.+|..+.....
T Consensus 163 ~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 242 (253)
T 1wrb_A 163 DFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRV 242 (253)
T ss_dssp HHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC--
T ss_pred HHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCC
Confidence 999888778899999999999999999999999999984 343 6789999999999999999999999988877654
Q ss_pred ccccccc
Q psy9399 237 EKKQKNI 243 (453)
Q Consensus 237 ~~~~~~~ 243 (453)
.....++
T Consensus 243 ~~~~~~i 249 (253)
T 1wrb_A 243 GSTSDSI 249 (253)
T ss_dssp -------
T ss_pred CCCcCCc
Confidence 4333333
No 62
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=3.5e-34 Score=265.53 Aligned_cols=203 Identities=32% Similarity=0.531 Sum_probs=180.1
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISG--RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLN 78 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~ 78 (453)
.+|++++|++.+.++|..+||..|+++|.++++.++.+ ++++++||||||||++|++|++..+..
T Consensus 92 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~------------- 158 (300)
T 3fmo_B 92 KSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP------------- 158 (300)
T ss_dssp CCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCT-------------
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhc-------------
Confidence 47999999999999999999999999999999999987 899999999999999999999988765
Q ss_pred cccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHH
Q psy9399 79 QNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGR 158 (453)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~ 158 (453)
...++++||++||++|+.|+.+.+..++.....+.+....|+...... ...+++|+|+||++
T Consensus 159 ---------------~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~ 220 (300)
T 3fmo_B 159 ---------------ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGT 220 (300)
T ss_dssp ---------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHH
T ss_pred ---------------cCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHHH
Confidence 334668999999999999999999999877666888888887764332 14567999999999
Q ss_pred HHHHHhc-CCCCCCCccEEEEechhhhcc-cCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEec
Q psy9399 159 LIDHMNS-GKINFSHLQILVLDEADRMLD-MGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVN 234 (453)
Q Consensus 159 l~~~l~~-~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 234 (453)
|.+++.+ +...+.++++||+||+|++.+ .++...+..+...++..+|++++|||+++.+..+...++.+|..+.+.
T Consensus 221 l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 221 VLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp HHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred HHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 9999865 556789999999999999997 688899999999999999999999999999999999999999887764
No 63
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=4e-34 Score=255.70 Aligned_cols=207 Identities=41% Similarity=0.594 Sum_probs=176.3
Q ss_pred CCCC-CCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccc
Q psy9399 2 NFKS-IGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQN 80 (453)
Q Consensus 2 ~~~~-l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 80 (453)
+|++ +++++.+.++|.++|+..|+++|.++++.+++++++++.||||+|||++|++|++..+.......
T Consensus 20 ~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~---------- 89 (228)
T 3iuy_A 20 RFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR---------- 89 (228)
T ss_dssp SHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC----------------
T ss_pred hHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchh----------
Confidence 5777 79999999999999999999999999999999999999999999999999999998776421100
Q ss_pred cccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHH
Q psy9399 81 NNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~ 160 (453)
....+.++||++|+++|+.|+.+.+.++.. ..+.+..++|+.........+..+++|+|+||+++.
T Consensus 90 ------------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~ 155 (228)
T 3iuy_A 90 ------------EQRNGPGMLVLTPTRELALHVEAECSKYSY--KGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLN 155 (228)
T ss_dssp ---------------CCCSEEEECSSHHHHHHHHHHHHHHCC--TTCCEEEECC------CHHHHHSCCSEEEECHHHHH
T ss_pred ------------hccCCCcEEEEeCCHHHHHHHHHHHHHhcc--cCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHH
Confidence 022467899999999999999999999862 347888889988887777777788999999999999
Q ss_pred HHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEE
Q psy9399 161 DHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILK 232 (453)
Q Consensus 161 ~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 232 (453)
..+......+.+++++|+||+|++.+++|...+..++..++...|++++|||+++.+..+...++.+|..+.
T Consensus 156 ~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 156 DLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp HHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred HHHHcCCcCcccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 998888878899999999999999999999999999999999999999999999999999999999887664
No 64
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=8.4e-34 Score=252.20 Aligned_cols=204 Identities=33% Similarity=0.623 Sum_probs=180.3
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQN 80 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 80 (453)
++|+++++++.+.++|..+|+..|+++|.++++.+++++++++++|||+|||++|+++++..+..
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~--------------- 78 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP--------------- 78 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC---------------
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhc---------------
Confidence 47999999999999999999999999999999999999999999999999999999999987654
Q ss_pred cccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhc-CCCCEEEeChHHH
Q psy9399 81 NNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLS-RNPEILLATPGRL 159 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~T~~~l 159 (453)
...+.++||++|+++|+.|+.+.++++....+.+++..++|+.....+...+. ..++|+|+||+.+
T Consensus 79 -------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l 145 (220)
T 1t6n_A 79 -------------VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI 145 (220)
T ss_dssp -------------CTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHH
T ss_pred -------------cCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHH
Confidence 22355899999999999999999999987665688889999888766655554 3579999999999
Q ss_pred HHHHhcCCCCCCCccEEEEechhhhcc-cCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEE
Q psy9399 160 IDHMNSGKINFSHLQILVLDEADRMLD-MGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILK 232 (453)
Q Consensus 160 ~~~l~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 232 (453)
...+......+.+++++|+||+|++.+ .++...+..++...+...|++++|||++..+..+.+.++.+|..+.
T Consensus 146 ~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 146 LALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp HHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred HHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 999988877889999999999999987 4777888888888888899999999999999999998998887654
No 65
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=7.9e-34 Score=253.14 Aligned_cols=204 Identities=31% Similarity=0.587 Sum_probs=174.6
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQN 80 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 80 (453)
++|+++++++.+.+.|..+|+..|+++|.++++.+++++++++.+|||+|||++|++|++..+..
T Consensus 14 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~--------------- 78 (224)
T 1qde_A 14 YKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT--------------- 78 (224)
T ss_dssp CCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT---------------
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhc---------------
Confidence 47999999999999999999999999999999999999999999999999999999999988754
Q ss_pred cccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHH
Q psy9399 81 NNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~ 160 (453)
...+.++||++|+++|+.|+.+.+.++....+ +.+..++|+.........+. .++|+|+||+++.
T Consensus 79 -------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~-~~~iiv~Tp~~l~ 143 (224)
T 1qde_A 79 -------------SVKAPQALMLAPTRELALQIQKVVMALAFHMD-IKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVF 143 (224)
T ss_dssp -------------TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC-CCEEEECC----------CT-TCSEEEECHHHHH
T ss_pred -------------cCCCceEEEEECCHHHHHHHHHHHHHHhcccC-ceEEEEeCCcchHHHHhcCC-CCCEEEECHHHHH
Confidence 23456899999999999999999999876554 78888888877665554443 3899999999999
Q ss_pred HHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEec
Q psy9399 161 DHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVN 234 (453)
Q Consensus 161 ~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 234 (453)
..+......+.+++++|+||+|++.++++...+..+...++...|++++|||+++.+..+...++.+|..+.+.
T Consensus 144 ~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~ 217 (224)
T 1qde_A 144 DNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVK 217 (224)
T ss_dssp HHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC--
T ss_pred HHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 99988877889999999999999999999999999999999899999999999999999999999998877554
No 66
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=3e-33 Score=279.52 Aligned_cols=308 Identities=15% Similarity=0.178 Sum_probs=209.1
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCc
Q psy9399 23 KPTGVQEQAIPAAI----SGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP 98 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~----~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
.|+|+|.++++.+. .+.++++.++||+|||++++..+...... ....
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~-----------------------------~~~~ 87 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKE-----------------------------NELT 87 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHT-----------------------------TCCS
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhc-----------------------------CCCC
Confidence 58999999998763 56789999999999999876655543322 2245
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEE
Q psy9399 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178 (453)
Q Consensus 99 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIi 178 (453)
++||+|| .+|+.||.+++.++.. ...+..++|+... ......+|+|+|++.+..... +....+++||+
T Consensus 88 ~~LIv~P-~~l~~qw~~e~~~~~~---~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIv 155 (500)
T 1z63_A 88 PSLVICP-LSVLKNWEEELSKFAP---HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVI 155 (500)
T ss_dssp SEEEEEC-STTHHHHHHHHHHHCT---TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEE
T ss_pred CEEEEcc-HHHHHHHHHHHHHHCC---CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEE
Confidence 8999999 5689999999999863 3566666655421 122357899999999865433 22356899999
Q ss_pred echhhhcccCChHHHHHHHhhCCCCccEEEEEeecCh-HHHH---HHH--------------------------------
Q psy9399 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDG-IVGN---MAE-------------------------------- 222 (453)
Q Consensus 179 DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~-~~~~---~~~-------------------------------- 222 (453)
||+|++.+... .....+..++ ..+.+++||||.. .... +..
T Consensus 156 DEaH~~kn~~~--~~~~~l~~l~-~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l 232 (500)
T 1z63_A 156 DEAQNIKNPQT--KIFKAVKELK-SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEEL 232 (500)
T ss_dssp ETGGGGSCTTS--HHHHHHHTSC-EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHH
T ss_pred eCccccCCHhH--HHHHHHHhhc-cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHH
Confidence 99999976642 2333344443 4578999999842 1111 111
Q ss_pred -hhcCCCeEEEeccc----ccccccceEEEEEEcch--------------------------------------------
Q psy9399 223 -NITKDPLILKVNSI----EKKQKNITQSILFVDDI-------------------------------------------- 253 (453)
Q Consensus 223 -~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-------------------------------------------- 253 (453)
..+ .+..+..... ....+........++..
T Consensus 233 ~~~l-~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p 311 (500)
T 1z63_A 233 KAII-SPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHP 311 (500)
T ss_dssp HHHH-TTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHH-hhHeeeecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCH
Confidence 011 1111111000 00111111112222111
Q ss_pred ------------hhHHHHHHHHHhh--CCCCcEEEEeccchhHHHHHHHHhhC-CCceeecCCCCCHHHHHHHHHHHhcC
Q psy9399 254 ------------LHKNRLLDYLLRD--KRVGQAVVFTATKRDADIIADRLNIS-GFLAAPLHGDLHQNARNRTLENLRRG 318 (453)
Q Consensus 254 ------------~~~~~~~~~l~~~--~~~~~~lvf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g 318 (453)
..+...+..++.. ..+.++||||+++..++.+++.|... +..+..+||+++..+|.++++.|++|
T Consensus 312 ~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~ 391 (500)
T 1z63_A 312 ALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNN 391 (500)
T ss_dssp HHHHCSCCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHC
T ss_pred HHhcCccchhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCC
Confidence 1122222222322 35679999999999999999999885 89999999999999999999999998
Q ss_pred -Ccc-EEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEE--EEeCh
Q psy9399 319 -RIK-ILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAV--SLVNH 375 (453)
Q Consensus 319 -~~~-vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~--~~~~~ 375 (453)
... +|++|+++++|+|+|.+++||++|+|+++..+.|++||++|.|+.+.+. .++..
T Consensus 392 ~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~ 452 (500)
T 1z63_A 392 PSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISV 452 (500)
T ss_dssp TTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEET
T ss_pred CCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeC
Confidence 455 7899999999999999999999999999999999999999999886654 44443
No 67
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=2.1e-33 Score=252.41 Aligned_cols=208 Identities=36% Similarity=0.552 Sum_probs=179.8
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccc
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQN 80 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 80 (453)
++|+++++++.+.+.|...|+..|+++|.++++.+++++++++++|||+|||++|++|++..+......
T Consensus 25 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~----------- 93 (236)
T 2pl3_A 25 TRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWT----------- 93 (236)
T ss_dssp SBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCC-----------
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhccc-----------
Confidence 469999999999999999999999999999999999999999999999999999999999887652211
Q ss_pred cccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHH
Q psy9399 81 NNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~ 160 (453)
...+.++||++|+++|+.|+.+.+.+++...+ +.+..++|+.........+ .+++|+|+||+++.
T Consensus 94 -------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~ 158 (236)
T 2pl3_A 94 -------------STDGLGVLIISPTRELAYQTFEVLRKVGKNHD-FSAGLIIGGKDLKHEAERI-NNINILVCTPGRLL 158 (236)
T ss_dssp -------------GGGCCCEEEECSSHHHHHHHHHHHHHHTTTSS-CCEEEECCC--CHHHHHHH-TTCSEEEECHHHHH
T ss_pred -------------ccCCceEEEEeCCHHHHHHHHHHHHHHhCCCC-eeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHH
Confidence 12356899999999999999999999876544 7888888888766655544 57899999999999
Q ss_pred HHHhcC-CCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCeEEEec
Q psy9399 161 DHMNSG-KINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVN 234 (453)
Q Consensus 161 ~~l~~~-~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 234 (453)
..+... ...+.+++++|+||+|++.++++...+..++..++...|++++|||+++.+..+.+.++.+|..+.+.
T Consensus 159 ~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 159 QHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp HHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred HHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 888764 45678899999999999999999999999999999999999999999999999999999999877653
No 68
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.5e-33 Score=255.18 Aligned_cols=203 Identities=37% Similarity=0.555 Sum_probs=175.4
Q ss_pred CCCCCC--CCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhcccc
Q psy9399 2 NFKSIG--LHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQ 79 (453)
Q Consensus 2 ~~~~l~--l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~ 79 (453)
+|++++ +++.+.+.|..+|+..|+++|.++++.++.+++++++||||+|||++|++|++..+......
T Consensus 53 ~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~---------- 122 (262)
T 3ly5_A 53 SFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM---------- 122 (262)
T ss_dssp CC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC----------
T ss_pred ChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc----------
Confidence 577777 99999999999999999999999999999999999999999999999999999887652211
Q ss_pred ccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHH
Q psy9399 80 NNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRL 159 (453)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l 159 (453)
...+.++||++|+++|+.|+.+.++++..... ..+..++|+.........+..+++|+|+||+++
T Consensus 123 --------------~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l 187 (262)
T 3ly5_A 123 --------------PRNGTGVLILSPTRELAMQTFGVLKELMTHHV-HTYGLIMGGSNRSAEAQKLGNGINIIVATPGRL 187 (262)
T ss_dssp --------------GGGCCCEEEECSSHHHHHHHHHHHHHHTTTCC-SCEEEECSSSCHHHHHHHHHHCCSEEEECHHHH
T ss_pred --------------ccCCceEEEEeCCHHHHHHHHHHHHHHHhhcC-ceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHH
Confidence 11356899999999999999999999876654 778888999888877777777899999999999
Q ss_pred HHHHhcCC-CCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCCe
Q psy9399 160 IDHMNSGK-INFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPL 229 (453)
Q Consensus 160 ~~~l~~~~-~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~ 229 (453)
...+.... ..+.++++||+||+|++.+++|...+..++..++...|++++|||+++.+..+.+..+.++.
T Consensus 188 ~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 188 LDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp HHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred HHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 98887653 56789999999999999999999999999999999999999999999999999887776543
No 69
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=9.5e-31 Score=267.26 Aligned_cols=322 Identities=15% Similarity=0.217 Sum_probs=216.9
Q ss_pred CCcHHHHHHHHHHh---------cCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhccc
Q psy9399 23 KPTGVQEQAIPAAI---------SGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRF 93 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~---------~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (453)
.|+|+|.+++..+. .+..+++..+||+|||+.++..+...+......
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~------------------------ 110 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDC------------------------ 110 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTS------------------------
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccc------------------------
Confidence 58999999999874 345699999999999998877776655432110
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHH--HH-Hhc-----CCCCEEEeChHHHHHHHhc
Q psy9399 94 KPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQ--MQ-LLS-----RNPEILLATPGRLIDHMNS 165 (453)
Q Consensus 94 ~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~-----~~~~Ilv~T~~~l~~~l~~ 165 (453)
.+...++||+||+ +|+.||.+++.++... .+.+..+++|...... .. ... ...+|+|+|++.+.....
T Consensus 111 ~p~~~~~LiV~P~-sll~qW~~E~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~- 186 (644)
T 1z3i_X 111 KPEIDKVIVVSPS-SLVRNWYNEVGKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE- 186 (644)
T ss_dssp SCSCSCEEEEECH-HHHHHHHHHHHHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT-
T ss_pred cCCCCcEEEEecH-HHHHHHHHHHHHHcCC--CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH-
Confidence 1224579999997 8999999999998754 2556666666543221 11 111 146899999999876432
Q ss_pred CCCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChH--------H-----------HHHHHhhc-
Q psy9399 166 GKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGI--------V-----------GNMAENIT- 225 (453)
Q Consensus 166 ~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~--------~-----------~~~~~~~~- 225 (453)
.+....+++||+||+|++.+.. ......+. .++ ..+.+++||||-.. + ..+.+.+.
T Consensus 187 -~l~~~~~~~vI~DEaH~ikn~~-~~~~~al~-~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~ 262 (644)
T 1z3i_X 187 -VLHKGKVGLVICDEGHRLKNSD-NQTYLALN-SMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEI 262 (644)
T ss_dssp -TTTTSCCCEEEETTGGGCCTTC-HHHHHHHH-HHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHH
T ss_pred -HhhcCCccEEEEECceecCChh-hHHHHHHH-hcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcc
Confidence 2234578999999999987654 22222222 232 34689999998310 0 00000000
Q ss_pred ----------------------------CCCeEEEecc--cccccccceEEEEEEc------------------------
Q psy9399 226 ----------------------------KDPLILKVNS--IEKKQKNITQSILFVD------------------------ 251 (453)
Q Consensus 226 ----------------------------~~~~~~~~~~--~~~~~~~~~~~~~~~~------------------------ 251 (453)
-.+..+.-.. .....+......+.+.
T Consensus 263 pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~ 342 (644)
T 1z3i_X 263 PILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQT 342 (644)
T ss_dssp HHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCT
T ss_pred hhhhcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 0000000000 0000000001111100
Q ss_pred -----------------------------------------------------chhhHHHHHHHHHhh---CCCCcEEEE
Q psy9399 252 -----------------------------------------------------DILHKNRLLDYLLRD---KRVGQAVVF 275 (453)
Q Consensus 252 -----------------------------------------------------~~~~~~~~~~~l~~~---~~~~~~lvf 275 (453)
..+.+...+..++.. ..+.++|||
T Consensus 343 g~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIF 422 (644)
T 1z3i_X 343 GKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLV 422 (644)
T ss_dssp TCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CccchhHHHHHHHHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEE
Confidence 012233333333332 346899999
Q ss_pred eccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCcc---EEEEeCCcccCCCCCCCcEEEEcCCCCChhH
Q psy9399 276 TATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIK---ILVATDVAARGIDVPAITHVFNYDLPKFPED 352 (453)
Q Consensus 276 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~ 352 (453)
|+++..++.+.+.|...|+.+..+||+++..+|..+++.|++|+.. +|++|+++++|+|++.+++||++|+|+++..
T Consensus 423 s~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~ 502 (644)
T 1z3i_X 423 SNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPAN 502 (644)
T ss_dssp ESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHH
T ss_pred EccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccH
Confidence 9999999999999999999999999999999999999999998764 8899999999999999999999999999999
Q ss_pred HHHHhhhccCCCCCccEE--EEeChh
Q psy9399 353 YVHRIGRTGRAGRNGFAV--SLVNHA 376 (453)
Q Consensus 353 ~~Q~~GR~~R~g~~g~~~--~~~~~~ 376 (453)
+.|++||++|.|+...+. .++...
T Consensus 503 ~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 503 DEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp HHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred HHHHHHhhhhcCCCCceEEEEEEECC
Confidence 999999999999876544 444443
No 70
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-31 Score=280.31 Aligned_cols=317 Identities=20% Similarity=0.256 Sum_probs=220.8
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCc
Q psy9399 23 KPTGVQEQAIPAAI----SGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP 98 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~----~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
.|+++|.+++..+. .+.+++++.+||+|||+.++..+...+... ....
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~----------------------------~~~~ 287 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR----------------------------RQNG 287 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH----------------------------SCCS
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc----------------------------CCCC
Confidence 68999999998765 678899999999999998777766554431 2245
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHH------------hcCCCCEEEeChHHHHHHHhcC
Q psy9399 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQL------------LSRNPEILLATPGRLIDHMNSG 166 (453)
Q Consensus 99 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~Ilv~T~~~l~~~l~~~ 166 (453)
.+||||| .+|+.||.+++.++. +.+.+...+|+.......+. ....++|+|+|++.+......
T Consensus 288 ~~LIV~P-~sll~qW~~E~~~~~---p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~- 362 (800)
T 3mwy_W 288 PHIIVVP-LSTMPAWLDTFEKWA---PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE- 362 (800)
T ss_dssp CEEEECC-TTTHHHHHHHHHHHS---TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH-
T ss_pred CEEEEEC-chHHHHHHHHHHHHC---CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH-
Confidence 7899999 688999999999886 34777777776654443332 123578999999999764331
Q ss_pred CCCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecC----hHHHHHHHhhcC----------------
Q psy9399 167 KINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLD----GIVGNMAENITK---------------- 226 (453)
Q Consensus 167 ~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~----~~~~~~~~~~~~---------------- 226 (453)
+....+++||+||+|++.+.. ......+..+ .....+++||||- ..+..+...+..
T Consensus 363 -l~~~~w~~vIvDEaH~lkn~~--s~~~~~l~~l-~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~ 438 (800)
T 3mwy_W 363 -LGSIKWQFMAVDEAHRLKNAE--SSLYESLNSF-KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDE 438 (800)
T ss_dssp -HHTSEEEEEEETTGGGGCCSS--SHHHHHHTTS-EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTT
T ss_pred -HhcCCcceeehhhhhhhcCch--hHHHHHHHHh-hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccch
Confidence 112368899999999997644 2233334444 3446799999982 112222211111
Q ss_pred -------------CCeEEEecc--cccccccceEEEEEEcc---------------------------------------
Q psy9399 227 -------------DPLILKVNS--IEKKQKNITQSILFVDD--------------------------------------- 252 (453)
Q Consensus 227 -------------~~~~~~~~~--~~~~~~~~~~~~~~~~~--------------------------------------- 252 (453)
.|..+.... .....+......+.+..
T Consensus 439 ~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk 518 (800)
T 3mwy_W 439 EQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKK 518 (800)
T ss_dssp HHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHH
Confidence 111111000 00000111111111110
Q ss_pred -----------------------------------hhhHHHHHHHHHhh--CCCCcEEEEeccchhHHHHHHHHhhCCCc
Q psy9399 253 -----------------------------------ILHKNRLLDYLLRD--KRVGQAVVFTATKRDADIIADRLNISGFL 295 (453)
Q Consensus 253 -----------------------------------~~~~~~~~~~l~~~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~ 295 (453)
.+.+...+..++.. ..+.++||||.....++.+...|...|+.
T Consensus 519 ~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~ 598 (800)
T 3mwy_W 519 ASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGIN 598 (800)
T ss_dssp HHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred HhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCC
Confidence 01223334444443 35679999999999999999999999999
Q ss_pred eeecCCCCCHHHHHHHHHHHhcCCcc---EEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccE--E
Q psy9399 296 AAPLHGDLHQNARNRTLENLRRGRIK---ILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFA--V 370 (453)
Q Consensus 296 ~~~~~~~~~~~~r~~~~~~f~~g~~~---vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~--~ 370 (453)
+..+||+++..+|..+++.|+++... +|++|.++++|+|++.+++||++|+++++..+.|++||++|.|+...+ +
T Consensus 599 ~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy 678 (800)
T 3mwy_W 599 FQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVY 678 (800)
T ss_dssp CEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEE
T ss_pred EEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEE
Confidence 99999999999999999999986654 899999999999999999999999999999999999999999987554 4
Q ss_pred EEeChh
Q psy9399 371 SLVNHA 376 (453)
Q Consensus 371 ~~~~~~ 376 (453)
.++...
T Consensus 679 rlv~~~ 684 (800)
T 3mwy_W 679 RLVSKD 684 (800)
T ss_dssp EEEETT
T ss_pred EEecCC
Confidence 445443
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=1.1e-31 Score=282.57 Aligned_cols=324 Identities=14% Similarity=0.129 Sum_probs=212.7
Q ss_pred CCcHHHHHHHHHHhc--------------CCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhh
Q psy9399 23 KPTGVQEQAIPAAIS--------------GRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHK 88 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~~--------------~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (453)
.||++|.+|++.++. +++.+++++||||||+++ ++++..+..
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~----------------------- 326 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE----------------------- 326 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT-----------------------
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh-----------------------
Confidence 599999999999875 257999999999999987 555554432
Q ss_pred hhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHh-cCCCCEEEeChHHHHHHHhcCC
Q psy9399 89 ERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLL-SRNPEILLATPGRLIDHMNSGK 167 (453)
Q Consensus 89 ~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ilv~T~~~l~~~l~~~~ 167 (453)
.....++|||+|+++|+.|+.+.+..+... .+.++.........+ ..+++|+|+|+++|...+....
T Consensus 327 -----~~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~-------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~ 394 (1038)
T 2w00_A 327 -----LDFIDKVFFVVDRKDLDYQTMKEYQRFSPD-------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAES 394 (1038)
T ss_dssp -----CTTCCEEEEEECGGGCCHHHHHHHHTTSTT-------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCC
T ss_pred -----cCCCceEEEEeCcHHHHHHHHHHHHHhccc-------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhccc
Confidence 122459999999999999999999887632 122333333333334 3468999999999998776532
Q ss_pred --CCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecChHHH----HHHHhhcCC--------------
Q psy9399 168 --INFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVG----NMAENITKD-------------- 227 (453)
Q Consensus 168 --~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~----~~~~~~~~~-------------- 227 (453)
..+..+.+||+||||++... ..+..+...++. .+++++||||..... .....+++.
T Consensus 395 ~~~~~~~~~lvIiDEAHrs~~~---~~~~~I~~~~p~-a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg 470 (1038)
T 2w00_A 395 DLPVYNQQVVFIFDECHRSQFG---EAQKNLKKKFKR-YYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDE 470 (1038)
T ss_dssp CCGGGGSCEEEEEESCCTTHHH---HHHHHHHHHCSS-EEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHT
T ss_pred chhccccccEEEEEccchhcch---HHHHHHHHhCCc-ccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCC
Confidence 23567899999999997642 335566677764 689999999864211 011111222
Q ss_pred ---CeEEEecccccccc------------cceEEEEEEcchhhHHHHHHHHHhh-----------CCCCcEEEEeccchh
Q psy9399 228 ---PLILKVNSIEKKQK------------NITQSILFVDDILHKNRLLDYLLRD-----------KRVGQAVVFTATKRD 281 (453)
Q Consensus 228 ---~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~lvf~~~~~~ 281 (453)
|..+.......... .+..... .........++..++.+ ..+.++||||+++.+
T Consensus 471 ~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~-l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~ 549 (1038)
T 2w00_A 471 KVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQQA-FLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDA 549 (1038)
T ss_dssp SSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCSTTT-TTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHH
T ss_pred CcCCeEEEEEeccchhhhccccccHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHH
Confidence 22211111000000 0000000 00111112233333331 134689999999999
Q ss_pred HHHHHHHHhhCC------------Cce-eecCCC----------C----------CH-----------------------
Q psy9399 282 ADIIADRLNISG------------FLA-APLHGD----------L----------HQ----------------------- 305 (453)
Q Consensus 282 ~~~l~~~L~~~~------------~~~-~~~~~~----------~----------~~----------------------- 305 (453)
|..+++.|.+.+ .++ ..+|++ + ++
T Consensus 550 A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~ 629 (1038)
T 2w00_A 550 AKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFST 629 (1038)
T ss_dssp HHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCS
T ss_pred HHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccc
Confidence 999999997643 444 455642 2 22
Q ss_pred ------HHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCC----ccEEEEeCh
Q psy9399 306 ------NARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRN----GFAVSLVNH 375 (453)
Q Consensus 306 ------~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~----g~~~~~~~~ 375 (453)
..|..++++|++|+++|||+|+++.+|+|+|.+ +++.+|.|.+...|+|++||++|.+.. |.++.|...
T Consensus 630 ~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 630 DSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp SHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCC
T ss_pred cchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEcccc
Confidence 137889999999999999999999999999999 677889999999999999999998653 566666653
Q ss_pred hhHHHHHHHHHHhh
Q psy9399 376 AERMNIKKIERFTK 389 (453)
Q Consensus 376 ~~~~~~~~~~~~~~ 389 (453)
. .....++..|.+
T Consensus 709 ~-~~l~~Al~~y~~ 721 (1038)
T 2w00_A 709 E-RSTIDAITLFGD 721 (1038)
T ss_dssp H-HHHHHHHHHTSC
T ss_pred H-HHHHHHHHHHhC
Confidence 3 333344444443
No 72
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=3.8e-30 Score=253.44 Aligned_cols=319 Identities=17% Similarity=0.187 Sum_probs=228.3
Q ss_pred hCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCC
Q psy9399 18 KVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ 97 (453)
Q Consensus 18 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (453)
.+|. .|++.|.-..-.+..|+ +..+.||+|||+++.+|++-.... +
T Consensus 71 ~lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~-------------------------------G 116 (822)
T 3jux_A 71 TLGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI-------------------------------G 116 (822)
T ss_dssp HTSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT-------------------------------S
T ss_pred HhCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc-------------------------------C
Confidence 3788 59999998887777765 999999999999999998765444 5
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECC------------------------------------------
Q psy9399 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGG------------------------------------------ 135 (453)
Q Consensus 98 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------ 135 (453)
..+.|++|+..||.|-++++..+....+ +.++.+...
T Consensus 117 ~~vhVvT~ndyLA~rdae~m~~l~~~Lg-lsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 195 (822)
T 3jux_A 117 KGVHLVTVNDYLARRDALWMGPVYLFLG-LRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKE 195 (822)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHHHHHTT-CCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHH
T ss_pred CceEEEeccHHHHHhHHHHHHHHHHHhC-CEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccc
Confidence 5899999999999999998888877776 888887762
Q ss_pred --------CchHHHHHHhcCCCCEEEeChHHH-HHHHhcCC------CCCCCccEEEEechhhhc-ccC-----------
Q psy9399 136 --------MPYLRQMQLLSRNPEILLATPGRL-IDHMNSGK------INFSHLQILVLDEADRML-DMG----------- 188 (453)
Q Consensus 136 --------~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~~------~~~~~~~~iIiDE~h~~~-~~~----------- 188 (453)
....+....+ .+||..+|..-| +++|+.+. ...+.+.+.|+||+|.++ |..
T Consensus 196 ~~~~~~~~~~~~err~aY--~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~ 273 (822)
T 3jux_A 196 AVEAFQVELKEITRKEAY--LCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSK 273 (822)
T ss_dssp HHTTTCEECCBCCHHHHH--HSSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCC
T ss_pred cchhccccCCHHHHHHHh--cCCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCC
Confidence 1111111111 379999999887 66766432 224668999999999643 100
Q ss_pred ----Ch--------------------------------HHHHHHH------------------hh------C--------
Q psy9399 189 ----FI--------------------------------NDIEKIV------------------DA------T-------- 200 (453)
Q Consensus 189 ----~~--------------------------------~~~~~~~------------------~~------~-------- 200 (453)
.+ ..++.++ .+ +
T Consensus 274 ~~~~~y~~~~~~v~~l~~~~dy~vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV 353 (822)
T 3jux_A 274 ESPSVYRRFAQIAKKFVKDKDFTVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVV 353 (822)
T ss_dssp SCHHHHHHHHHHTTSSCBTTTEEECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEE
T ss_pred CccHHHHHHHHHHHhcCcCCcEEEEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEE
Confidence 00 0000000 00 0
Q ss_pred -----------------------------------------------------CCCccEEEEEeecChHHHHHHHhhcCC
Q psy9399 201 -----------------------------------------------------PVTRQTMLFSATLDGIVGNMAENITKD 227 (453)
Q Consensus 201 -----------------------------------------------------~~~~~~i~~SAT~~~~~~~~~~~~~~~ 227 (453)
+...++.+||+|.......+.+.+..+
T Consensus 354 ~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~ 433 (822)
T 3jux_A 354 MNGEVIIVDEFTGRLLPGRRYSGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME 433 (822)
T ss_dssp ETTEEEECSSSSCSCCCSCCCGGGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC
T ss_pred ECCEEEEEECCCCcCCCCCcCchHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe
Confidence 011269999999987777666655433
Q ss_pred CeEEEecccccccccceEEEEEEcchhhHHHH-HHHHHhh-CCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCH
Q psy9399 228 PLILKVNSIEKKQKNITQSILFVDDILHKNRL-LDYLLRD-KRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQ 305 (453)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 305 (453)
++.++.. .......+......+...+... +..+... ..+.++||||+|++.++.+++.|...|+++..+||+...
T Consensus 434 --vv~IPtn-kp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~ 510 (822)
T 3jux_A 434 --VVVIPTH-KPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHE 510 (822)
T ss_dssp --EEECCCS-SCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHH
T ss_pred --EEEECCC-CCcceeecCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchH
Confidence 3333221 1112222222233344444444 4444433 356799999999999999999999999999999999666
Q ss_pred HHHHHHHHHHhcCCccEEEEeCCcccCCCCC--------CCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhh
Q psy9399 306 NARNRTLENLRRGRIKILVATDVAARGIDVP--------AITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAE 377 (453)
Q Consensus 306 ~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~--------~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 377 (453)
.++..+...++.| .|+|||+++++|+|++ +..+||+++.|.+...|.||+||+||.|.+|.+++|++..|
T Consensus 511 rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 511 KEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp HHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred HHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 6666666667666 6999999999999998 56699999999999999999999999999999999998877
Q ss_pred H
Q psy9399 378 R 378 (453)
Q Consensus 378 ~ 378 (453)
.
T Consensus 589 ~ 589 (822)
T 3jux_A 589 D 589 (822)
T ss_dssp H
T ss_pred H
Confidence 4
No 73
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.98 E-value=9.2e-32 Score=243.10 Aligned_cols=206 Identities=28% Similarity=0.441 Sum_probs=169.6
Q ss_pred CCCCC----CCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhcc
Q psy9399 2 NFKSI----GLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNL 77 (453)
Q Consensus 2 ~~~~l----~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~ 77 (453)
+|+++ ++++.+.+.+.+.|+..|+++|.++++.+++++++++.||||+|||++|++|++..+...
T Consensus 26 ~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~----------- 94 (245)
T 3dkp_A 26 TFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQP----------- 94 (245)
T ss_dssp SHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSC-----------
T ss_pred CHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhc-----------
Confidence 46665 899999999999999999999999999999999999999999999999999999887542
Q ss_pred ccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHH-HHhcCCCCEEEeCh
Q psy9399 78 NQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQM-QLLSRNPEILLATP 156 (453)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Ilv~T~ 156 (453)
...+.++||++|+++|+.|+.+.+.++....+ +.+..++++....... .....+++|+|+||
T Consensus 95 ----------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp 157 (245)
T 3dkp_A 95 ----------------ANKGFRALIISPTRELASQIHRELIKISEGTG-FRIHMIHKAAVAAKKFGPKSSKKFDILVTTP 157 (245)
T ss_dssp ----------------CSSSCCEEEECSSHHHHHHHHHHHHHHTTTSC-CCEECCCHHHHHHTTTSTTSCCCCCEEEECH
T ss_pred ----------------ccCCceEEEEeCCHHHHHHHHHHHHHHhcccC-ceEEEEecCccHHHHhhhhhcCCCCEEEECH
Confidence 22356899999999999999999999876554 6666665544322221 12234679999999
Q ss_pred HHHHHHHhcC--CCCCCCccEEEEechhhhcc---cCChHHHHHHHhhC-CCCccEEEEEeecChHHHHHHHhhcCCCeE
Q psy9399 157 GRLIDHMNSG--KINFSHLQILVLDEADRMLD---MGFINDIEKIVDAT-PVTRQTMLFSATLDGIVGNMAENITKDPLI 230 (453)
Q Consensus 157 ~~l~~~l~~~--~~~~~~~~~iIiDE~h~~~~---~~~~~~~~~~~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~ 230 (453)
++|...+... ...+.+++++|+||+|++.+ .++...+..++..+ +...|++++|||+++.+..+...++.+|..
T Consensus 158 ~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~ 237 (245)
T 3dkp_A 158 NRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVIS 237 (245)
T ss_dssp HHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEE
T ss_pred HHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEE
Confidence 9999988776 45678999999999999988 46777777777665 456799999999999999999999999988
Q ss_pred EEecc
Q psy9399 231 LKVNS 235 (453)
Q Consensus 231 ~~~~~ 235 (453)
+.+..
T Consensus 238 i~~~~ 242 (245)
T 3dkp_A 238 VSIGA 242 (245)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 87654
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.96 E-value=2.3e-26 Score=230.73 Aligned_cols=130 Identities=18% Similarity=0.152 Sum_probs=111.0
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCc
Q psy9399 19 VGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP 98 (453)
Q Consensus 19 ~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
+|+ .|+++|..+++.++.|+ +..+.||+|||++|.+|++..... +.
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~-------------------------------G~ 121 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT-------------------------------GK 121 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT-------------------------------CS
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh-------------------------------CC
Confidence 799 89999999999999998 999999999999999999654333 44
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHH-HHHHhcCC------CCCC
Q psy9399 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRL-IDHMNSGK------INFS 171 (453)
Q Consensus 99 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~~------~~~~ 171 (453)
+++|++||++|+.|.++++..+....+ +++..++||......... .+++|+|+||+.| ++++..+. ..++
T Consensus 122 qv~VvTPTreLA~Qdae~m~~l~~~lG-Lsv~~i~Gg~~~~~r~~a--y~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r 198 (997)
T 2ipc_A 122 GVHVVTVNDYLARRDAEWMGPVYRGLG-LSVGVIQHASTPAERRKA--YLADVTYVTNSELGFDYLRDNMAISPDQLVLR 198 (997)
T ss_dssp CCEEEESSHHHHHHHHHHHHHHHHTTT-CCEEECCTTCCHHHHHHH--HTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSC
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHHhcC-CeEEEEeCCCCHHHHHHH--cCCCEEEECchhhhhHHHHHhhhcchhhcccc
Confidence 799999999999999999999988776 999999999885443333 3689999999999 88887653 4567
Q ss_pred ---CccEEEEechhhhc
Q psy9399 172 ---HLQILVLDEADRML 185 (453)
Q Consensus 172 ---~~~~iIiDE~h~~~ 185 (453)
.+.++|+||+|.++
T Consensus 199 ~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 199 HDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp SSSSSCEEEETTHHHHT
T ss_pred cCCCcceEEEechHHHH
Confidence 89999999999876
No 75
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=1.4e-26 Score=236.22 Aligned_cols=130 Identities=23% Similarity=0.303 Sum_probs=113.6
Q ss_pred hHHHHHHHHHhh-CCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCC
Q psy9399 255 HKNRLLDYLLRD-KRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGI 333 (453)
Q Consensus 255 ~~~~~~~~l~~~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gv 333 (453)
....++..+... ..+.++||||+++..++.+++.|...|+.+..+||++++.+|..+++.|++|+++|||||+++++|+
T Consensus 424 ~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~Gl 503 (664)
T 1c4o_A 424 QILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGL 503 (664)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTC
T ss_pred hHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCc
Confidence 334444554443 3567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEcCC-----CCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHH
Q psy9399 334 DVPAITHVFNYDL-----PKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIE 385 (453)
Q Consensus 334 di~~~~~Vi~~~~-----~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~ 385 (453)
|+|++++||+++. |.+..+|+||+||+||.+ .|.++++++..+....+.+.
T Consensus 504 Dip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i~ 559 (664)
T 1c4o_A 504 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAIE 559 (664)
T ss_dssp CCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHHH
T ss_pred cCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHHH
Confidence 9999999999997 889999999999999984 79999999887665544443
No 76
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.9e-26 Score=196.61 Aligned_cols=156 Identities=33% Similarity=0.532 Sum_probs=140.4
Q ss_pred cccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCC
Q psy9399 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGR 319 (453)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 319 (453)
..++.+.+..++....+...+..++.....+++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|+
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~ 84 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK 84 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTS
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 35788888888777768888888888888889999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeCCcccCCCCCCCcEEEEcCCC------CChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHHHhhcCCC
Q psy9399 320 IKILVATDVAARGIDVPAITHVFNYDLP------KFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIP 393 (453)
Q Consensus 320 ~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~------~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (453)
.+|||||+++++|+|+|++++||+++.| .+..+|+||+||+||.|+.|.+++++...+...+..+++.++..++
T Consensus 85 ~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~ 164 (175)
T 2rb4_A 85 EKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSIK 164 (175)
T ss_dssp CSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCCCE
T ss_pred CeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCccc
Confidence 9999999999999999999999999999 8999999999999999999999999999998889999888887654
Q ss_pred cc
Q psy9399 394 IE 395 (453)
Q Consensus 394 ~~ 395 (453)
..
T Consensus 165 ~~ 166 (175)
T 2rb4_A 165 QL 166 (175)
T ss_dssp EE
T ss_pred cc
Confidence 43
No 77
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.95 E-value=7.6e-26 Score=230.66 Aligned_cols=129 Identities=22% Similarity=0.351 Sum_probs=113.8
Q ss_pred hHHHHHHHHHhh-CCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcccCC
Q psy9399 255 HKNRLLDYLLRD-KRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGI 333 (453)
Q Consensus 255 ~~~~~~~~l~~~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gv 333 (453)
....++..+... ..+.++||||+++..++.+++.|...|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+
T Consensus 430 ~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~Gl 509 (661)
T 2d7d_A 430 QIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGL 509 (661)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTC
T ss_pred hHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCc
Confidence 344455555443 3567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEcCC-----CCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHH
Q psy9399 334 DVPAITHVFNYDL-----PKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKI 384 (453)
Q Consensus 334 di~~~~~Vi~~~~-----~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~ 384 (453)
|+|++++||+++. |.+..+|+||+||+||. ..|.+++++++.+......+
T Consensus 510 Dip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i 564 (661)
T 2d7d_A 510 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIAI 564 (661)
T ss_dssp CCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHHH
T ss_pred ccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHHH
Confidence 9999999999997 88999999999999998 78999999988766544433
No 78
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.95 E-value=2.2e-26 Score=193.67 Aligned_cols=152 Identities=38% Similarity=0.603 Sum_probs=139.8
Q ss_pred ccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCc
Q psy9399 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRI 320 (453)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 320 (453)
.++.+.+..++ ...+...+..++....++++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|+.
T Consensus 8 ~~i~~~~~~~~-~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 86 (163)
T 2hjv_A 8 RNIEHAVIQVR-EENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEY 86 (163)
T ss_dssp CCEEEEEEECC-GGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred ccceEEEEECC-hHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 56777777764 45677777777777777899999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHHHhhcCCC
Q psy9399 321 KILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIP 393 (453)
Q Consensus 321 ~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (453)
+|||||+++++|+|+|++++||++++|+++.+|.||+||+||.|+.|.+++++.+.+...++.++++++.+++
T Consensus 87 ~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~ 159 (163)
T 2hjv_A 87 RYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQ 159 (163)
T ss_dssp SEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCE
T ss_pred eEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998877654
No 79
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.94 E-value=3.5e-26 Score=192.96 Aligned_cols=152 Identities=36% Similarity=0.597 Sum_probs=135.3
Q ss_pred cceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCcc
Q psy9399 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIK 321 (453)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 321 (453)
++.+.+..++....+...+..++.....+++||||++++.++.+++.|...++.+..+||+|++.+|..+++.|++|+.+
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 82 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 82 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE
Confidence 56777777766665888888888888888999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHHHhhcCCC
Q psy9399 322 ILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIP 393 (453)
Q Consensus 322 vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (453)
|||||+++++|+|+|++++||++++|++..+|.||+||+||.|+.|.+++++.+.+...+..++++++..++
T Consensus 83 vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (165)
T 1fuk_A 83 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIE 154 (165)
T ss_dssp EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCE
T ss_pred EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCcc
Confidence 999999999999999999999999999999999999999999999999999999998888888888876654
No 80
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=1.2e-25 Score=190.77 Aligned_cols=151 Identities=27% Similarity=0.434 Sum_probs=135.8
Q ss_pred ccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCc
Q psy9399 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRI 320 (453)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 320 (453)
..+.+.+..++ ...+...+..+++....+++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|+.
T Consensus 4 ~~i~q~~~~~~-~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 82 (172)
T 1t5i_A 4 HGLQQYYVKLK-DNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 82 (172)
T ss_dssp -CCEEEEEECC-GGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CCeEEEEEECC-hHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 45677777664 45677778888888788899999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChh-hHHHHHHHHHHhhcCC
Q psy9399 321 KILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHA-ERMNIKKIERFTKQQI 392 (453)
Q Consensus 321 ~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~ 392 (453)
+|||||+++++|+|+|++++||++++|++..+|.||+||+||.|+.|.+++++++. +...++.+++.++.++
T Consensus 83 ~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (172)
T 1t5i_A 83 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNI 155 (172)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCE
T ss_pred cEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcch
Confidence 99999999999999999999999999999999999999999999999999999875 5567788888776554
No 81
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.93 E-value=1.7e-25 Score=192.65 Aligned_cols=165 Identities=33% Similarity=0.556 Sum_probs=129.2
Q ss_pred hcCCCeEEEecccccccccceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCC
Q psy9399 224 ITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDL 303 (453)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 303 (453)
++.+|..+.+........++.+.+..++. ..+...+..++... ++++||||+++..++.+++.|...++.+..+||++
T Consensus 11 ~~~~p~~i~v~~~~~~~~~i~q~~~~~~~-~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~ 88 (191)
T 2p6n_A 11 VDLGTENLYFQSMGAASLDVIQEVEYVKE-EAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGK 88 (191)
T ss_dssp -----------------CCSEEEEEECCG-GGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTS
T ss_pred ccCCCEEEEECCCCCCCcCceEEEEEcCh-HHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 45667666666555555778888887754 45666666666654 36899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCCccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChh-hHHHHH
Q psy9399 304 HQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHA-ERMNIK 382 (453)
Q Consensus 304 ~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~~ 382 (453)
++.+|..+++.|++|+.+|||||+++++|+|+|++++||++++|+++.+|.||+||+||.|+.|.+++++++. +....+
T Consensus 89 ~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~ 168 (191)
T 2p6n_A 89 DQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLM 168 (191)
T ss_dssp CHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHH
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876 666777
Q ss_pred HHHHHhhc
Q psy9399 383 KIERFTKQ 390 (453)
Q Consensus 383 ~~~~~~~~ 390 (453)
.+.+.++.
T Consensus 169 ~l~~~l~~ 176 (191)
T 2p6n_A 169 DLKALLLE 176 (191)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776643
No 82
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.93 E-value=3.9e-25 Score=194.13 Aligned_cols=143 Identities=42% Similarity=0.623 Sum_probs=132.5
Q ss_pred chhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCccc
Q psy9399 252 DILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAAR 331 (453)
Q Consensus 252 ~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~ 331 (453)
....+...+..++....++++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++
T Consensus 14 ~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~ 93 (212)
T 3eaq_A 14 PVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAAR 93 (212)
T ss_dssp CTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTC
T ss_pred CHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhc
Confidence 45677788888888877899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHHHhhcCCCc
Q psy9399 332 GIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394 (453)
Q Consensus 332 Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (453)
|+|+|++++||+++.|++..+|.||+||+||.|+.|.++++++..+...+..+++.++..+..
T Consensus 94 Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~ 156 (212)
T 3eaq_A 94 GLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKR 156 (212)
T ss_dssp SSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEE
T ss_pred CCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCee
Confidence 999999999999999999999999999999999999999999999999999999988876544
No 83
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.93 E-value=3.4e-25 Score=190.04 Aligned_cols=150 Identities=40% Similarity=0.630 Sum_probs=121.7
Q ss_pred cccceEEEEEEcchhhHHHHHHHHHhhC-CCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcC
Q psy9399 240 QKNITQSILFVDDILHKNRLLDYLLRDK-RVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRG 318 (453)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 318 (453)
..++.+.+..++. ..+...+..++... .++++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|
T Consensus 17 ~~~i~q~~~~v~~-~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g 95 (185)
T 2jgn_A 17 SENITQKVVWVEE-SDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 95 (185)
T ss_dssp CTTEEEEEEECCG-GGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHT
T ss_pred CCCceEEEEEeCc-HHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 4678888887754 45666666666654 568999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHHHhhc
Q psy9399 319 RIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQ 390 (453)
Q Consensus 319 ~~~vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 390 (453)
+.+|||||+++++|+|+|++++||++|+|+++.+|.||+||+||.|+.|.+++++++.+...++.+.++++.
T Consensus 96 ~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 167 (185)
T 2jgn_A 96 KSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVE 167 (185)
T ss_dssp SSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHH
T ss_pred CCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999998888888887754
No 84
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.93 E-value=5.9e-25 Score=219.92 Aligned_cols=104 Identities=13% Similarity=0.143 Sum_probs=70.1
Q ss_pred CCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEE--EeCCcccCCCCCC----CcEE
Q psy9399 268 RVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILV--ATDVAARGIDVPA----ITHV 341 (453)
Q Consensus 268 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv--~T~~~~~Gvdi~~----~~~V 341 (453)
..+++|||++|...++.+++.|.. .. ...++.. .+|..+++.|+++. .||+ +|+.+++|||+|+ +++|
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~V 456 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESL 456 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEE
Confidence 457899999999999999998875 33 3445543 35889999999865 6777 7899999999997 7889
Q ss_pred EEcCCCCChh------------------------------HHHHHhhhccCCCCCccEEEEeChhh
Q psy9399 342 FNYDLPKFPE------------------------------DYVHRIGRTGRAGRNGFAVSLVNHAE 377 (453)
Q Consensus 342 i~~~~~~~~~------------------------------~~~Q~~GR~~R~g~~g~~~~~~~~~~ 377 (453)
|+.+.|.... .+.|.+||+.|...+-.++++++.+-
T Consensus 457 ii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~R~ 522 (540)
T 2vl7_A 457 VLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDSRY 522 (540)
T ss_dssp EEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESGGG
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcccc
Confidence 9999885321 24599999999977766777777653
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.87 E-value=2.3e-27 Score=201.24 Aligned_cols=162 Identities=40% Similarity=0.694 Sum_probs=144.2
Q ss_pred cceEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCcc
Q psy9399 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIK 321 (453)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 321 (453)
++.+.+..++....+...+..++....++++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|+.+
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~ 82 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 82 (170)
Confidence 34455555544356667777777777778999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHHHhhcCCCccccCCCC
Q psy9399 322 ILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401 (453)
Q Consensus 322 vLv~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (453)
|||||+++++|+|+|++++||+++.|++..+|.||+||+||.|+.|.++++++..+...+..++++++..++...+.+++
T Consensus 83 vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (170)
T 2yjt_D 83 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVIDELR 162 (170)
Confidence 99999999999999999999999999999999999999999999999999999999888999999888888777766665
Q ss_pred cc
Q psy9399 402 PK 403 (453)
Q Consensus 402 ~~ 403 (453)
|.
T Consensus 163 p~ 164 (170)
T 2yjt_D 163 PK 164 (170)
Confidence 53
No 86
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.92 E-value=5e-24 Score=195.68 Aligned_cols=150 Identities=38% Similarity=0.584 Sum_probs=132.1
Q ss_pred eEEEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEE
Q psy9399 244 TQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKIL 323 (453)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vL 323 (453)
.+.++.. ....+...+..++....++++||||++++.++.+++.|...++.+..+||+|++.+|..+++.|++|+.+||
T Consensus 4 ~~~~i~~-~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vL 82 (300)
T 3i32_A 4 EEEAVPA-PVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVL 82 (300)
T ss_dssp EEEEEEC-CSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEE
T ss_pred EEEEEEC-CHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEE
Confidence 4445544 446677888888877778999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHHHhhcCCCc
Q psy9399 324 VATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394 (453)
Q Consensus 324 v~T~~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (453)
|||+++++|+|+|++++||+++.|++...|.||+||+||.|+.|.++++++..+...++.+++.++..+..
T Consensus 83 VaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~ 153 (300)
T 3i32_A 83 VATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKR 153 (300)
T ss_dssp EECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEE
T ss_pred EEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceE
Confidence 99999999999999999999999999999999999999999999999999999999999999988876543
No 87
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.91 E-value=7.2e-22 Score=198.34 Aligned_cols=309 Identities=16% Similarity=0.111 Sum_probs=198.6
Q ss_pred CCcHHHHHHHHHH----hcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCc
Q psy9399 23 KPTGVQEQAIPAA----ISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP 98 (453)
Q Consensus 23 ~~~~~Q~~~~~~~----~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
+++++|.+++.++ ..++++++.||||+|||++|++|++.. +.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~----------------------------------~~ 48 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV----------------------------------KP 48 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH----------------------------------CS
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC----------------------------------CC
Confidence 6999999977754 478899999999999999999999872 44
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCch---------------------------------HHH----
Q psy9399 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPY---------------------------------LRQ---- 141 (453)
Q Consensus 99 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~---- 141 (453)
+++|++||++|+.|+.+++..+.... .+++..+.|.... ...
T Consensus 49 ~v~i~~pt~~l~~q~~~~~~~l~~~~-~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~ 127 (551)
T 3crv_A 49 KVLFVVRTHNEFYPIYRDLTKIREKR-NITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKL 127 (551)
T ss_dssp EEEEEESSGGGHHHHHHHHTTCCCSS-CCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHH
T ss_pred eEEEEcCCHHHHHHHHHHHHHHhhhc-CccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHH
Confidence 89999999999999999888875544 3677766653211 111
Q ss_pred --------------HHHhcCCCCEEEeChHHHHHHHhcCCCCC-CCccEEEEechhhhcccCC-----------------
Q psy9399 142 --------------MQLLSRNPEILLATPGRLIDHMNSGKINF-SHLQILVLDEADRMLDMGF----------------- 189 (453)
Q Consensus 142 --------------~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~-~~~~~iIiDE~h~~~~~~~----------------- 189 (453)
.+.....++|+|+|++.|++...+....+ ....++||||||++.+ ..
T Consensus 128 ~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~ 206 (551)
T 3crv_A 128 KKDGLQDKFCPYYSLLNSLYKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIK 206 (551)
T ss_dssp HHHHHHHTCCHHHHHHHHGGGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHH
T ss_pred HHcCCcCCcCccHHHHhhhhcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHH
Confidence 12233468999999999988765443322 4678999999998765 10
Q ss_pred --------------------------------------hHHHHHH----------------------------Hh-----
Q psy9399 190 --------------------------------------INDIEKI----------------------------VD----- 198 (453)
Q Consensus 190 --------------------------------------~~~~~~~----------------------------~~----- 198 (453)
...+..+ +.
T Consensus 207 ~l~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 286 (551)
T 3crv_A 207 QSKSEESRRILSKLLNQLREVVLPDEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIG 286 (551)
T ss_dssp HCSCHHHHHHHHHHHHHHTTSCCSCSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhcc
Confidence 0000000 00
Q ss_pred -----------------------hCCCC-ccEEEEEeecChHHHHHHHhhcCC-CeEEE--ecccccccccceEEEEEEc
Q psy9399 199 -----------------------ATPVT-RQTMLFSATLDGIVGNMAENITKD-PLILK--VNSIEKKQKNITQSILFVD 251 (453)
Q Consensus 199 -----------------------~~~~~-~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~ 251 (453)
.+... ..+|++|||+.+ +..+...+..+ +.... ....+... ..+..+.+.
T Consensus 287 ~~~v~~~~~~l~~~pl~~~~~l~~~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf--~~~~~l~v~ 363 (551)
T 3crv_A 287 SFIPFSYSKRLVIKNPEISYYLNLLNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRV--SGSYECYIG 363 (551)
T ss_dssp SCEEEEETTEEEEECCCTHHHHGGGGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCC--SCEEEEEEE
T ss_pred CCeEeccCCEEEEEECCHHHHHHHHhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcC--CCceEEEEe
Confidence 01122 578999999987 44455444333 22110 11111111 112222211
Q ss_pred c-h--------hh-HHH---HHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcC
Q psy9399 252 D-I--------LH-KNR---LLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRG 318 (453)
Q Consensus 252 ~-~--------~~-~~~---~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 318 (453)
. . .. ... .+..++. ..++++|||++|...++.+++. .+.++..-..+++ +...++.|+.+
T Consensus 364 ~~~~~~~~~r~~~~~~~l~~~i~~l~~-~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~ 436 (551)
T 3crv_A 364 VDVTSKYDMRSDNMWKRYADYLLKIYF-QAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISAN 436 (551)
T ss_dssp CSCCCCTTTCCHHHHHHHHHHHHHHHH-HCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSS
T ss_pred CCCCCccccCCHHHHHHHHHHHHHHHH-hCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhc
Confidence 1 0 01 112 2233333 3446999999999999999973 3444443333445 35577788544
Q ss_pred CccEEEEe--CCcccCCCCC---C--CcEEEEcCCCCC--------------------h----------hHHHHHhhhcc
Q psy9399 319 RIKILVAT--DVAARGIDVP---A--ITHVFNYDLPKF--------------------P----------EDYVHRIGRTG 361 (453)
Q Consensus 319 ~~~vLv~T--~~~~~Gvdi~---~--~~~Vi~~~~~~~--------------------~----------~~~~Q~~GR~~ 361 (453)
...||+|| ..+++|||+| + +++||....|.. . ..+.|.+||+.
T Consensus 437 ~~~vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlI 516 (551)
T 3crv_A 437 NKVLIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAI 516 (551)
T ss_dssp SSCEEEEESSCCSCCSSCCEETTEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEEecceecccccccccCCcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCc
Confidence 45899998 6999999999 3 678888876641 1 11349999999
Q ss_pred CCCCCccEEEEeChhh
Q psy9399 362 RAGRNGFAVSLVNHAE 377 (453)
Q Consensus 362 R~g~~g~~~~~~~~~~ 377 (453)
|...+..++++++.+=
T Consensus 517 R~~~D~G~v~llD~R~ 532 (551)
T 3crv_A 517 RDVNDKCNVWLLDKRF 532 (551)
T ss_dssp CSTTCEEEEEEESGGG
T ss_pred cCCCccEEEEEeehhc
Confidence 9988877888887764
No 88
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.91 E-value=3.9e-24 Score=189.18 Aligned_cols=167 Identities=17% Similarity=0.204 Sum_probs=118.3
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCc
Q psy9399 19 VGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP 98 (453)
Q Consensus 19 ~~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
.....|+++|.++++.+++++++++.+|||+|||++++.++...+..... ...+.
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~-------------------------~~~~~ 83 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK-------------------------ASEPG 83 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH-------------------------TTCCC
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc-------------------------ccCCC
Confidence 34457999999999999999999999999999999999999877654210 12355
Q ss_pred eEEEEcCcHHHHHH-HHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCC------CCCC
Q psy9399 99 RMLVLTPTRELALQ-VTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGK------INFS 171 (453)
Q Consensus 99 ~~lil~P~~~L~~q-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~------~~~~ 171 (453)
++||++|+++|+.| +.+.+..+... .+.+..+.|+.............++|+|+||+.|...+.... ..+.
T Consensus 84 ~~lil~p~~~L~~q~~~~~~~~~~~~--~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~ 161 (216)
T 3b6e_A 84 KVIVLVNKVLLVEQLFRKEFQPFLKK--WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLS 161 (216)
T ss_dssp CEEEEESSHHHHHHHHHHTHHHHHTT--TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGG
T ss_pred cEEEEECHHHHHHHHHHHHHHHHhcc--CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchh
Confidence 89999999999999 77888887653 367777777665443333333468999999999998887643 4578
Q ss_pred CccEEEEechhhhcccCChHHHH-HHHhhC-------------CCCccEEEEEee
Q psy9399 172 HLQILVLDEADRMLDMGFINDIE-KIVDAT-------------PVTRQTMLFSAT 212 (453)
Q Consensus 172 ~~~~iIiDE~h~~~~~~~~~~~~-~~~~~~-------------~~~~~~i~~SAT 212 (453)
++++||+||+|++.+.++...+. .+.... ....+++++|||
T Consensus 162 ~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 162 DFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp GCSEEEETTC-------CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred cccEEEEECchhhccCCcHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 89999999999998766555443 222211 145689999998
No 89
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.87 E-value=2.7e-22 Score=184.72 Aligned_cols=154 Identities=19% Similarity=0.225 Sum_probs=121.7
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEE
Q psy9399 23 KPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLV 102 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 102 (453)
.|+++|.++++.++.+++.++++|||+|||++++.++...+.. ...++||
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~------------------------------~~~~~li 162 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN------------------------------YEGKILI 162 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH------------------------------CSSEEEE
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc------------------------------CCCeEEE
Confidence 7999999999999988889999999999999998887766543 1338999
Q ss_pred EcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEechh
Q psy9399 103 LTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182 (453)
Q Consensus 103 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h 182 (453)
++|+++|+.||.+++.+++.... ..+..++++..... ......+|+|+|++.+... ....+.++++||+||||
T Consensus 163 l~Pt~~L~~q~~~~l~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH 235 (282)
T 1rif_A 163 IVPTTALTTQMADDFVDYRLFSH-AMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECH 235 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHTSCCG-GGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGG
T ss_pred EECCHHHHHHHHHHHHHhccccc-ceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCc
Confidence 99999999999999999864332 56677777765322 2224679999999987543 22346789999999999
Q ss_pred hhcccCChHHHHHHHhhCCCCccEEEEEeecChHH
Q psy9399 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217 (453)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~ 217 (453)
++.+ ..+..++..++...+++++|||+++..
T Consensus 236 ~~~~----~~~~~il~~~~~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 236 LATG----KSISSIISGLNNCMFKFGLSGSLRDGK 266 (282)
T ss_dssp GCCH----HHHHHHTTTCTTCCEEEEECSSCCTTS
T ss_pred cCCc----ccHHHHHHHhhcCCeEEEEeCCCCCcc
Confidence 9874 366777777777889999999997543
No 90
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.86 E-value=3.8e-21 Score=171.90 Aligned_cols=169 Identities=19% Similarity=0.226 Sum_probs=122.3
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEE
Q psy9399 23 KPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLV 102 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 102 (453)
.++++|.++++.+.+++++++.||||||||.++..+++....... .....++++
T Consensus 61 p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~--------------------------~~~~~~~l~ 114 (235)
T 3llm_A 61 PVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQND--------------------------RAAECNIVV 114 (235)
T ss_dssp GGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT--------------------------CGGGCEEEE
T ss_pred ChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC--------------------------CCCceEEEE
Confidence 579999999999999999999999999999988888877655421 112448999
Q ss_pred EcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEechh
Q psy9399 103 LTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182 (453)
Q Consensus 103 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h 182 (453)
++|+++++.|+.+.+...........+........ ......++|+|+||++|.+.+.. .+.++++||+||+|
T Consensus 115 ~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah 186 (235)
T 3llm_A 115 TQPRRISAVSVAERVAFERGEEPGKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIH 186 (235)
T ss_dssp EESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTT
T ss_pred eccchHHHHHHHHHHHHHhccccCceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCc
Confidence 99999999999888876543221222222211111 00113578999999999998876 37899999999999
Q ss_pred hh-cccCCh-HHHHHHHhhCCCCccEEEEEeecChHHHHHHHhhcCCC
Q psy9399 183 RM-LDMGFI-NDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDP 228 (453)
Q Consensus 183 ~~-~~~~~~-~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~ 228 (453)
.+ .+.++. ..+..+.... ...|++++|||++... +.+.+...|
T Consensus 187 ~~~~~~~~~~~~l~~i~~~~-~~~~~il~SAT~~~~~--~~~~~~~~p 231 (235)
T 3llm_A 187 ERDINTDFLLVVLRDVVQAY-PEVRIVLMSATIDTSM--FCEYFFNCP 231 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHHC-TTSEEEEEECSSCCHH--HHHHTTSCC
T ss_pred cCCcchHHHHHHHHHHHhhC-CCCeEEEEecCCCHHH--HHHHcCCCC
Confidence 85 566555 4556666555 4678999999998755 555454444
No 91
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.86 E-value=9e-20 Score=184.41 Aligned_cols=110 Identities=15% Similarity=0.186 Sum_probs=77.1
Q ss_pred HHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEe--CCcccCCCCCC--
Q psy9399 262 YLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVAT--DVAARGIDVPA-- 337 (453)
Q Consensus 262 ~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T--~~~~~Gvdi~~-- 337 (453)
.++... +++++||++|....+.+++.|+. .... ...+++..++..+++.|+ ++..||+|+ ..+++|||+|+
T Consensus 442 ~l~~~~-~g~~lvlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~ 516 (620)
T 4a15_A 442 DIILKV-KKNTIVYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNE 516 (620)
T ss_dssp HHHHHH-CSCEEEEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CC
T ss_pred HHHHhC-CCCEEEEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCc
Confidence 334333 46799999999999999999872 2222 445566678999999999 888999998 49999999986
Q ss_pred CcEEEEcCCCCCh-----------------------------hHHHHHhhhccCCCCCccEEEEeChh
Q psy9399 338 ITHVFNYDLPKFP-----------------------------EDYVHRIGRTGRAGRNGFAVSLVNHA 376 (453)
Q Consensus 338 ~~~Vi~~~~~~~~-----------------------------~~~~Q~~GR~~R~g~~g~~~~~~~~~ 376 (453)
+++||....|... ....|.+||+.|...+-.++++++.+
T Consensus 517 l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 584 (620)
T 4a15_A 517 LEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKR 584 (620)
T ss_dssp CCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECGG
T ss_pred eEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEccc
Confidence 6789998887531 11359999999998886677777765
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.82 E-value=2.5e-19 Score=159.79 Aligned_cols=138 Identities=17% Similarity=0.170 Sum_probs=108.5
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEE
Q psy9399 23 KPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLV 102 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 102 (453)
.|+++|.+++..+++++++++++|||+|||.+++.++... +.+++|
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~----------------------------------~~~~li 138 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----------------------------------STPTLI 138 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS----------------------------------CSCEEE
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc----------------------------------CCCEEE
Confidence 6899999999999998889999999999999988777653 337999
Q ss_pred EcCcHHHHHHHHHHHHHHhcccCCee-EEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEech
Q psy9399 103 LTPTRELALQVTAATERYGLYMKKIK-AISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181 (453)
Q Consensus 103 l~P~~~L~~q~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~ 181 (453)
++|+++|+.||.+.+.++ .+. +..+.|+.. ...+|+|+|++.+...... ...++++||+||+
T Consensus 139 v~P~~~L~~q~~~~~~~~-----~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEa 201 (237)
T 2fz4_A 139 VVPTLALAEQWKERLGIF-----GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEV 201 (237)
T ss_dssp EESSHHHHHHHHHHHGGG-----CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEECS
T ss_pred EeCCHHHHHHHHHHHHhC-----CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH---hcccCCEEEEECC
Confidence 999999999999988874 255 666666554 3579999999998776542 1246899999999
Q ss_pred hhhcccCChHHHHHHHhhCCCCccEEEEEeecChH
Q psy9399 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGI 216 (453)
Q Consensus 182 h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~ 216 (453)
|++.+..+. .+...++ ..+++++|||+...
T Consensus 202 H~l~~~~~~----~i~~~~~-~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 202 HHLPAESYV----QIAQMSI-APFRLGLTATFERE 231 (237)
T ss_dssp SCCCTTTHH----HHHHTCC-CSEEEEEEESCC--
T ss_pred ccCCChHHH----HHHHhcc-CCEEEEEecCCCCC
Confidence 999876543 3444444 56789999998753
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.75 E-value=6.7e-18 Score=153.12 Aligned_cols=124 Identities=16% Similarity=0.196 Sum_probs=94.4
Q ss_pred hhhHHHHHHHHHhhC--CCCcEEEEeccchhHHHHHHHHhhC-CCceeecCCCCCHHHHHHHHHHHhcC-Ccc-EEEEeC
Q psy9399 253 ILHKNRLLDYLLRDK--RVGQAVVFTATKRDADIIADRLNIS-GFLAAPLHGDLHQNARNRTLENLRRG-RIK-ILVATD 327 (453)
Q Consensus 253 ~~~~~~~~~~l~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-vLv~T~ 327 (453)
...|...+..++... .+.++||||++...++.+.+.|... |+.+..+||+++..+|..+++.|++| ..+ +|++|+
T Consensus 94 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~ 173 (271)
T 1z5z_A 94 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK 173 (271)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred cCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehh
Confidence 345666666665543 6689999999999999999999885 99999999999999999999999999 677 789999
Q ss_pred CcccCCCCCCCcEEEEcCCCCChhHHHHHhhhccCCCCCccE--EEEeChh
Q psy9399 328 VAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFA--VSLVNHA 376 (453)
Q Consensus 328 ~~~~Gvdi~~~~~Vi~~~~~~~~~~~~Q~~GR~~R~g~~g~~--~~~~~~~ 376 (453)
++++|+|++.+++||++|+|+++..+.|++||++|.|+.+.+ +.++...
T Consensus 174 ~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 174 AGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp TTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 999999999999999999999999999999999999988665 4444443
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.79 E-value=4e-08 Score=99.31 Aligned_cols=158 Identities=23% Similarity=0.305 Sum_probs=92.6
Q ss_pred HHHHHHhC-CCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHH--HHHHHHHHhhhhcCCcchhhhhccccccccchhhh
Q psy9399 12 VLKALVKV-GYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTA--AFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHK 88 (453)
Q Consensus 12 ~~~~l~~~-~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~--~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (453)
+...|..+ .-..-.++|+.+++.++.++.+++.|++|+|||. +++++.+..+..
T Consensus 137 ~~~~l~~~~~~~~~~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~----------------------- 193 (608)
T 1w36_D 137 LAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD----------------------- 193 (608)
T ss_dssp HHHHHHTTCCCTTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS-----------------------
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh-----------------------
Confidence 44555553 2122378999999999999999999999999994 455555544321
Q ss_pred hhcccCCCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCC-EEEeChHHHHHHHhcCC
Q psy9399 89 ERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPE-ILLATPGRLIDHMNSGK 167 (453)
Q Consensus 89 ~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Ilv~T~~~l~~~l~~~~ 167 (453)
..+.++++++||..++.++.+.+.......+ +..... .+.. . .....+ ++-.+++.. . +....
T Consensus 194 ------~~~~~vll~APTg~AA~~L~e~~~~~~~~l~-l~~~~~-~~~~--~----~~~Tih~ll~~~~~~~-~-~~~~~ 257 (608)
T 1w36_D 194 ------GERCRIRLAAPTGKAAARLTESLGKALRQLP-LTDEQK-KRIP--E----DASTLHRLLGAQPGSQ-R-LRHHA 257 (608)
T ss_dssp ------SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSS-CCSCCC-CSCS--C----CCBTTTSCC-------------CT
T ss_pred ------cCCCeEEEEeCChhHHHHHHHHHHHHHhcCC-CCHHHH-hccc--h----hhhhhHhhhccCCCch-H-HHhcc
Confidence 1245899999999999999887766543221 110000 0000 0 000011 111122211 0 11111
Q ss_pred CCCCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEee
Q psy9399 168 INFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSAT 212 (453)
Q Consensus 168 ~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 212 (453)
.....++++|+||++++. ...+..++..++...|+|++.-.
T Consensus 258 ~~~l~~d~lIIDEAsml~----~~~~~~Ll~~l~~~~~liLvGD~ 298 (608)
T 1w36_D 258 GNPLHLDVLVVDEASMID----LPMMSRLIDALPDHARVIFLGDR 298 (608)
T ss_dssp TSCCSCSEEEECSGGGCB----HHHHHHHHHTCCTTCEEEEEECT
T ss_pred CCCCCCCEEEEechhhCC----HHHHHHHHHhCCCCCEEEEEcch
Confidence 122378999999999553 45667788888888888887644
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.52 E-value=1.6e-07 Score=95.93 Aligned_cols=68 Identities=18% Similarity=0.205 Sum_probs=55.2
Q ss_pred CCcHHHHHHHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEE
Q psy9399 23 KPTGVQEQAIPAAISGRD-LIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRML 101 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~~~~~-~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 101 (453)
.+++.|.+|+..++..++ .+|.||+|+|||.+....+.+.+.. +.++|
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~-------------------------------~~~IL 237 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ-------------------------------GLKVL 237 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT-------------------------------TCCEE
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC-------------------------------CCeEE
Confidence 578999999999887664 8999999999998766555554443 45899
Q ss_pred EEcCcHHHHHHHHHHHHHHh
Q psy9399 102 VLTPTRELALQVTAATERYG 121 (453)
Q Consensus 102 il~P~~~L~~q~~~~~~~~~ 121 (453)
+++||..-+.++.+.+...+
T Consensus 238 v~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 238 CCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp EEESSHHHHHHHHHHHHHTT
T ss_pred EEcCchHHHHHHHHHHHhcC
Confidence 99999999999988886543
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.38 E-value=4.3e-06 Score=84.85 Aligned_cols=70 Identities=17% Similarity=0.161 Sum_probs=54.7
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceE
Q psy9399 21 YTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRM 100 (453)
Q Consensus 21 ~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (453)
+..+++.|.+|+..++.+..++|.||+|+|||.+....+ ..+... .+.++
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i-~~l~~~-----------------------------~~~~i 227 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIV-YHLARQ-----------------------------GNGPV 227 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHH-HHHHTS-----------------------------SSCCE
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHH-HHHHHc-----------------------------CCCeE
Confidence 346789999999999887779999999999998654433 333321 24589
Q ss_pred EEEcCcHHHHHHHHHHHHHH
Q psy9399 101 LVLTPTRELALQVTAATERY 120 (453)
Q Consensus 101 lil~P~~~L~~q~~~~~~~~ 120 (453)
++++||...+.++.+.+.+.
T Consensus 228 lv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 228 LVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp EEEESSHHHHHHHHHHHHTT
T ss_pred EEEeCcHHHHHHHHHHHHhc
Confidence 99999999999998887654
No 97
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.37 E-value=5.3e-06 Score=86.13 Aligned_cols=70 Identities=19% Similarity=0.238 Sum_probs=55.0
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEE
Q psy9399 22 TKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRML 101 (453)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 101 (453)
..+++.|.+|+..++.+..++|.||+|+|||.+....+...+.. .+.+++
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~------------------------------~~~~IL 408 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKI------------------------------HKDRIL 408 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHH------------------------------HCCCEE
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhC------------------------------CCCeEE
Confidence 45789999999999887779999999999998654444332221 144899
Q ss_pred EEcCcHHHHHHHHHHHHHHh
Q psy9399 102 VLTPTRELALQVTAATERYG 121 (453)
Q Consensus 102 il~P~~~L~~q~~~~~~~~~ 121 (453)
+++||...+.++.+.+.+.+
T Consensus 409 v~a~tn~A~d~l~~rL~~~g 428 (802)
T 2xzl_A 409 VCAPSNVAVDHLAAKLRDLG 428 (802)
T ss_dssp EEESSHHHHHHHHHHHHHTT
T ss_pred EEcCcHHHHHHHHHHHHhhC
Confidence 99999999999999887653
No 98
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.35 E-value=3e-06 Score=82.78 Aligned_cols=76 Identities=12% Similarity=0.219 Sum_probs=51.3
Q ss_pred HHHHHHhCCCCCCcHHHHHHHHHHhcC----C-cEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchh
Q psy9399 12 VLKALVKVGYTKPTGVQEQAIPAAISG----R-DLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYT 86 (453)
Q Consensus 12 ~~~~l~~~~~~~~~~~Q~~~~~~~~~~----~-~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (453)
....+.-+.+..+++.|++++..+... + .++|.|+.|+|||.+. ..++..+...
T Consensus 14 ~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~-------------------- 72 (459)
T 3upu_A 14 LVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST-------------------- 72 (459)
T ss_dssp -------CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT--------------------
T ss_pred CccccCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc--------------------
Confidence 344555678889999999999987532 3 7999999999999744 4444444431
Q ss_pred hhhhcccCCCCceEEEEcCcHHHHHHHHHHH
Q psy9399 87 HKERLRFKPAQPRMLVLTPTRELALQVTAAT 117 (453)
Q Consensus 87 ~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 117 (453)
+...+++++||...+..+.+.+
T Consensus 73 ---------~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 73 ---------GETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp ---------TCCCEEEEESSHHHHHHHHHHH
T ss_pred ---------CCceEEEecCcHHHHHHHHhhh
Confidence 1237999999988877765544
No 99
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.35 E-value=2.6e-06 Score=85.22 Aligned_cols=126 Identities=17% Similarity=0.202 Sum_probs=79.8
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEE
Q psy9399 23 KPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLV 102 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 102 (453)
.+++.|.+++..+..++.+++.|+.|+|||.+. ..++..+.. .+.++++
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~------------------------------~g~~Vl~ 237 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES------------------------------LGLEVGL 237 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH------------------------------TTCCEEE
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh------------------------------cCCeEEE
Confidence 589999999999998888999999999999753 334444333 2458999
Q ss_pred EcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEechh
Q psy9399 103 LTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182 (453)
Q Consensus 103 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h 182 (453)
++||...+..+.+.+. .....++ +.+...+ + .+.........+++||+||++
T Consensus 238 ~ApT~~Aa~~L~e~~~--------~~a~Tih---------~ll~~~~-----~------~~~~~~~~~~~~dvlIIDEas 289 (574)
T 3e1s_A 238 CAPTGKAARRLGEVTG--------RTASTVH---------RLLGYGP-----Q------GFRHNHLEPAPYDLLIVDEVS 289 (574)
T ss_dssp EESSHHHHHHHHHHHT--------SCEEEHH---------HHTTEET-----T------EESCSSSSCCSCSEEEECCGG
T ss_pred ecCcHHHHHHhHhhhc--------ccHHHHH---------HHHcCCc-----c------hhhhhhcccccCCEEEEcCcc
Confidence 9999988877655331 1111110 0000000 0 011111123468999999999
Q ss_pred hhcccCChHHHHHHHhhCCCCccEEEEEe
Q psy9399 183 RMLDMGFINDIEKIVDATPVTRQTMLFSA 211 (453)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 211 (453)
++. ...+..++..++...+++++.-
T Consensus 290 ml~----~~~~~~Ll~~~~~~~~lilvGD 314 (574)
T 3e1s_A 290 MMG----DALMLSLLAAVPPGARVLLVGD 314 (574)
T ss_dssp GCC----HHHHHHHHTTSCTTCEEEEEEC
T ss_pred CCC----HHHHHHHHHhCcCCCEEEEEec
Confidence 764 3456667777777766666643
No 100
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.31 E-value=4.1e-05 Score=78.36 Aligned_cols=71 Identities=18% Similarity=0.198 Sum_probs=54.9
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEE
Q psy9399 22 TKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRML 101 (453)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 101 (453)
..+++.|.+++.. ....++|.|+.|||||.+...-+...+.... ....+++
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~---------------------------~~~~~iL 58 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN---------------------------CSPYSIM 58 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSC---------------------------CCGGGEE
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCC---------------------------CChhhEE
Confidence 4689999999973 3567999999999999876665655554321 1234899
Q ss_pred EEcCcHHHHHHHHHHHHHHh
Q psy9399 102 VLTPTRELALQVTAATERYG 121 (453)
Q Consensus 102 il~P~~~L~~q~~~~~~~~~ 121 (453)
++++|+..+.++.+.+.+..
T Consensus 59 ~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 59 AVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp EEESSHHHHHHHHHHHHHHH
T ss_pred EEeccHHHHHHHHHHHHHHh
Confidence 99999999999999888764
No 101
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.26 E-value=9.9e-06 Score=84.04 Aligned_cols=69 Identities=17% Similarity=0.172 Sum_probs=54.1
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEE
Q psy9399 22 TKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRML 101 (453)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 101 (453)
..+++.|.+|+..++.+...+|.||+|+|||.+.... +..+... .+.+++
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~-i~~l~~~-----------------------------~~~~il 404 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATI-VYHLARQ-----------------------------GNGPVL 404 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHH-HHHHHTT-----------------------------CSSCEE
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHH-HHHHHHc-----------------------------CCCcEE
Confidence 4578999999999988777999999999999865433 3333321 245899
Q ss_pred EEcCcHHHHHHHHHHHHHH
Q psy9399 102 VLTPTRELALQVTAATERY 120 (453)
Q Consensus 102 il~P~~~L~~q~~~~~~~~ 120 (453)
+++||...+.++.+.+...
T Consensus 405 v~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 405 VCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp EEESSHHHHHHHHHHHHTT
T ss_pred EEcCcHHHHHHHHHHHHHh
Confidence 9999999999998887654
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.95 E-value=0.00012 Score=66.52 Aligned_cols=121 Identities=12% Similarity=0.006 Sum_probs=87.5
Q ss_pred hhhHHHHHHHHHhh--CCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCCcc
Q psy9399 253 ILHKNRLLDYLLRD--KRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAA 330 (453)
Q Consensus 253 ~~~~~~~~~~l~~~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~ 330 (453)
.+.|..++..++.. ..+.+++||++..+..+-+..++...++.+..+.|.....+ .+ -.++...+.+.|....
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k----~~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AA----ANDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hh----cccCCceEEEEECCCC
Confidence 45677777777664 45679999999999999999999999999999999955432 11 1245556666677667
Q ss_pred cCCC-----CCCCcEEEEcCCCCChhHH-HHHhhhccCCC----CCccEEEEeChhhH
Q psy9399 331 RGID-----VPAITHVFNYDLPKFPEDY-VHRIGRTGRAG----RNGFAVSLVNHAER 378 (453)
Q Consensus 331 ~Gvd-----i~~~~~Vi~~~~~~~~~~~-~Q~~GR~~R~g----~~g~~~~~~~~~~~ 378 (453)
-|+| +...+.||.+|..+++..- +|.+-|+.|.| +...++.++.....
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~Ti 239 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSI 239 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSH
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCH
Confidence 7776 5678999999999998875 99999998873 34567777766543
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.66 E-value=0.00067 Score=63.81 Aligned_cols=120 Identities=11% Similarity=0.101 Sum_probs=75.6
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEE
Q psy9399 23 KPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLV 102 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 102 (453)
.++++|...+..+...+.+++..+-+.|||.+....++..+.. ..+..+++
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~-----------------------------~~g~~v~~ 213 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-----------------------------NKDKAVGI 213 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS-----------------------------SSSCEEEE
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh-----------------------------CCCCeEEE
Confidence 6899999999877555668999999999998766555543332 12458999
Q ss_pred EcCcHHHHHHHHHHHHHHhcccCC-ee--EEEEECCCchHHHHHHhcCCCCEEEeC--hHHHHHHHhcCCCCCCCccEEE
Q psy9399 103 LTPTRELALQVTAATERYGLYMKK-IK--AISILGGMPYLRQMQLLSRNPEILLAT--PGRLIDHMNSGKINFSHLQILV 177 (453)
Q Consensus 103 l~P~~~L~~q~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~Ilv~T--~~~l~~~l~~~~~~~~~~~~iI 177 (453)
+.|+...+..+.+.+..+....+. +. .... .... -.+.++..|.+.+ ++.+.. .+.+++|
T Consensus 214 vA~t~~qA~~vf~~i~~mi~~~P~ll~~~~~~~-~~~~-----I~f~nGs~i~~lsa~~~slrG---------~~~~~vi 278 (385)
T 2o0j_A 214 LAHKGSMSAEVLDRTKQAIELLPDFLQPGIVEW-NKGS-----IELDNGSSIGAYASSPDAVRG---------NSFAMIY 278 (385)
T ss_dssp EESSHHHHHHHHHHHHHHHHHSCTTTSCCEEEE-CSSE-----EEETTSCEEEEEECSHHHHHT---------SCCSEEE
T ss_pred EeCCHHHHHHHHHHHHHHHHhChHhhhhhhccC-CccE-----EEeCCCCEEEEEECCCCCccC---------CCCCEEE
Confidence 999999998888777776543332 11 1111 1000 0011233443333 333311 3568999
Q ss_pred Eechhhhcc
Q psy9399 178 LDEADRMLD 186 (453)
Q Consensus 178 iDE~h~~~~ 186 (453)
+||+|.+.+
T Consensus 279 iDE~a~~~~ 287 (385)
T 2o0j_A 279 IEDCAFIPN 287 (385)
T ss_dssp EESGGGSTT
T ss_pred echhhhcCC
Confidence 999998764
No 104
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.37 E-value=0.00042 Score=65.99 Aligned_cols=106 Identities=19% Similarity=0.266 Sum_probs=62.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy9399 41 LIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120 (453)
Q Consensus 41 ~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 120 (453)
.++.|+.|+|||....-.+ . ..+.+|++||++++..+.+.+.+.
T Consensus 164 ~~I~G~aGsGKTt~I~~~~-----~-------------------------------~~~~lVlTpT~~aa~~l~~kl~~~ 207 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRV-----N-------------------------------FEEDLILVPGRQAAEMIRRRANAS 207 (446)
T ss_dssp EEEEECTTSCHHHHHHHHC-----C-------------------------------TTTCEEEESCHHHHHHHHHHHTTT
T ss_pred EEEEcCCCCCHHHHHHHHh-----c-------------------------------cCCeEEEeCCHHHHHHHHHHhhhc
Confidence 7899999999998432211 1 015699999999999988776432
Q ss_pred hcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHHhhC
Q psy9399 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDAT 200 (453)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~ 200 (453)
+.. .....-|.|.+.++.. .........+++||||+-++ +.+ .+..++...
T Consensus 208 ~~~-----------------------~~~~~~V~T~dsfL~~--~~~~~~~~~d~liiDE~sm~-~~~---~l~~l~~~~ 258 (446)
T 3vkw_A 208 GII-----------------------VATKDNVRTVDSFLMN--YGKGARCQFKRLFIDEGLML-HTG---CVNFLVEMS 258 (446)
T ss_dssp SCC-----------------------CCCTTTEEEHHHHHHT--TTSSCCCCCSEEEEETGGGS-CHH---HHHHHHHHT
T ss_pred Ccc-----------------------ccccceEEEeHHhhcC--CCCCCCCcCCEEEEeCcccC-CHH---HHHHHHHhC
Confidence 100 0112347777765432 11111234899999999855 333 233334444
Q ss_pred CCCccEEEEEee
Q psy9399 201 PVTRQTMLFSAT 212 (453)
Q Consensus 201 ~~~~~~i~~SAT 212 (453)
+. .+++++.-+
T Consensus 259 ~~-~~vilvGD~ 269 (446)
T 3vkw_A 259 LC-DIAYVYGDT 269 (446)
T ss_dssp TC-SEEEEEECT
T ss_pred CC-CEEEEecCc
Confidence 33 445555443
No 105
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.36 E-value=0.0034 Score=63.16 Aligned_cols=121 Identities=11% Similarity=0.093 Sum_probs=76.5
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEE
Q psy9399 23 KPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLV 102 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 102 (453)
.++++|...+..+...+..++.++-|+|||.+....++..+... ++..+++
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~-----------------------------~~~~i~~ 213 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-----------------------------KDKAVGI 213 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS-----------------------------SSCEEEE
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC-----------------------------CCCeEEE
Confidence 58999999998875556799999999999987665555444431 2458999
Q ss_pred EcCcHHHHHHHHHHHHHHhcccCC-eeEEEE-ECCCchHHHHHHhcCCCCEEEeC--hHHHHHHHhcCCCCCCCccEEEE
Q psy9399 103 LTPTRELALQVTAATERYGLYMKK-IKAISI-LGGMPYLRQMQLLSRNPEILLAT--PGRLIDHMNSGKINFSHLQILVL 178 (453)
Q Consensus 103 l~P~~~L~~q~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~Ilv~T--~~~l~~~l~~~~~~~~~~~~iIi 178 (453)
+.|+...+..+.+.+..+....+. +..... ..... -.+.++..|.+.+ ++.+.. .+.+++|+
T Consensus 214 va~t~~qA~~~~~~i~~~i~~~p~~~~~~~~~~~~~~-----i~~~nGs~i~~~s~~~~~lrG---------~~~~~~ii 279 (592)
T 3cpe_A 214 LAHKGSMSAEVLDRTKQAIELLPDFLQPGIVEWNKGS-----IELDNGSSIGAYASSPDAVRG---------NSFAMIYI 279 (592)
T ss_dssp EESSHHHHHHHHHHHHHHHTTSCTTTSCCEEEECSSE-----EEETTSCEEEEEECCHHHHHH---------SCCSEEEE
T ss_pred EECCHHHHHHHHHHHHHHHHhChHhhccccccCCccE-----EEecCCCEEEEEeCCCCCccC---------CCcceEEE
Confidence 999999998888888776544331 111000 01100 0011234443332 343322 24789999
Q ss_pred echhhhcc
Q psy9399 179 DEADRMLD 186 (453)
Q Consensus 179 DE~h~~~~ 186 (453)
||+|...+
T Consensus 280 DE~~~~~~ 287 (592)
T 3cpe_A 280 EDCAFIPN 287 (592)
T ss_dssp ETGGGCTT
T ss_pred ehhccCCc
Confidence 99998755
No 106
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.20 E-value=0.00041 Score=60.06 Aligned_cols=45 Identities=9% Similarity=0.129 Sum_probs=26.5
Q ss_pred EEEeChHHHHHHHhcCCCCCCCccEEEEechhhhcccCChHHHHHHH
Q psy9399 151 ILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIV 197 (453)
Q Consensus 151 Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~ 197 (453)
+.+.+...++..+.... .-..+++||+||+|.+... ....+..+.
T Consensus 69 ~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l~~~-~ve~l~~L~ 113 (223)
T 2b8t_A 69 VEVESAPEILNYIMSNS-FNDETKVIGIDEVQFFDDR-ICEVANILA 113 (223)
T ss_dssp EEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGSCTH-HHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHh-hCCCCCEEEEecCccCcHH-HHHHHHHHH
Confidence 34566666776665432 1245899999999975432 333444433
No 107
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.11 E-value=0.00068 Score=57.83 Aligned_cols=25 Identities=12% Similarity=0.109 Sum_probs=18.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhhh
Q psy9399 41 LIVSSQTGSGKTAAFMLPALHKFAS 65 (453)
Q Consensus 41 ~lv~a~TGsGKT~~~l~~~~~~l~~ 65 (453)
.++.|++|+|||...+-.+.....+
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~ 55 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFA 55 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC
Confidence 6789999999998766666655443
No 108
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.06 E-value=0.00038 Score=58.62 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=18.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHh
Q psy9399 38 GRDLIVSSQTGSGKTAAFMLPALHK 62 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~l~~~~~~ 62 (453)
+.-.++.||+|+|||...+-.+...
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4457899999999998655554443
No 109
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.06 E-value=0.0021 Score=53.78 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=23.4
Q ss_pred cHHHHHHHHHHh---------cCCcEEEEcCCCchHHHHH
Q psy9399 25 TGVQEQAIPAAI---------SGRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 25 ~~~Q~~~~~~~~---------~~~~~lv~a~TGsGKT~~~ 55 (453)
.+.|++++..+. .++.+++.||+|+|||..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 456777766654 3567999999999999743
No 110
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.91 E-value=0.0024 Score=54.97 Aligned_cols=27 Identities=15% Similarity=0.062 Sum_probs=19.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhhhh
Q psy9399 39 RDLIVSSQTGSGKTAAFMLPALHKFAS 65 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~~~~~~l~~ 65 (453)
.-.++.|++|+|||...+-.+.....+
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~ 46 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIA 46 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 347889999999998766666655433
No 111
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.90 E-value=0.0022 Score=66.28 Aligned_cols=71 Identities=20% Similarity=0.190 Sum_probs=54.7
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEE
Q psy9399 22 TKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRML 101 (453)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 101 (453)
..+++.|.+++.. ...+++|.|+.|||||.+...-+...+.... ....++|
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~---------------------------~~p~~IL 60 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH---------------------------VAPWNIL 60 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC---------------------------CCGGGEE
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC---------------------------CCHHHeE
Confidence 4689999999976 3467999999999999876655655554311 1234899
Q ss_pred EEcCcHHHHHHHHHHHHHHh
Q psy9399 102 VLTPTRELALQVTAATERYG 121 (453)
Q Consensus 102 il~P~~~L~~q~~~~~~~~~ 121 (453)
+++.|+..+.++.+.+....
T Consensus 61 ~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 61 AITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp EEESSHHHHHHHHHHHHHHH
T ss_pred EEeccHHHHHHHHHHHHHHh
Confidence 99999999999998888764
No 112
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.88 E-value=0.0028 Score=58.84 Aligned_cols=39 Identities=15% Similarity=0.142 Sum_probs=27.8
Q ss_pred CcHHHHHHHHHHh----cCC---cEEEEcCCCchHHHHHHHHHHHh
Q psy9399 24 PTGVQEQAIPAAI----SGR---DLIVSSQTGSGKTAAFMLPALHK 62 (453)
Q Consensus 24 ~~~~Q~~~~~~~~----~~~---~~lv~a~TGsGKT~~~l~~~~~~ 62 (453)
+.|||.+++..+. +++ ..++.||.|+|||..+...+-..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l 48 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYL 48 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHH
Confidence 4688888876654 343 38999999999998665554443
No 113
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.85 E-value=0.00059 Score=57.64 Aligned_cols=25 Identities=12% Similarity=0.033 Sum_probs=18.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhh
Q psy9399 39 RDLIVSSQTGSGKTAAFMLPALHKF 63 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~~~~~~l 63 (453)
+-.++.||+|+|||...+-.+....
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~ 33 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAK 33 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3478899999999986665555443
No 114
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.83 E-value=0.0033 Score=64.46 Aligned_cols=71 Identities=18% Similarity=0.093 Sum_probs=54.7
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEE
Q psy9399 23 KPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLV 102 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 102 (453)
.+++.|.+++... +.+++|.|+.|||||.+...-+...+.... ....++++
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~---------------------------~~~~~IL~ 52 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCG---------------------------YQARHIAA 52 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHC---------------------------CCGGGEEE
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcC---------------------------CCHHHeEE
Confidence 4789999999753 567999999999999876655555554311 12348999
Q ss_pred EcCcHHHHHHHHHHHHHHhc
Q psy9399 103 LTPTRELALQVTAATERYGL 122 (453)
Q Consensus 103 l~P~~~L~~q~~~~~~~~~~ 122 (453)
++.|+..+.++.+.+.....
T Consensus 53 lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 53 VTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp EESSHHHHHHHHHHHHHHSC
T ss_pred EeccHHHHHHHHHHHHHHcC
Confidence 99999999999999887643
No 115
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.79 E-value=0.001 Score=53.82 Aligned_cols=18 Identities=28% Similarity=0.456 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCchHHHH
Q psy9399 37 SGRDLIVSSQTGSGKTAA 54 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~ 54 (453)
.++.+++.||+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567799999999999974
No 116
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.74 E-value=0.0011 Score=56.40 Aligned_cols=24 Identities=13% Similarity=0.018 Sum_probs=17.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHh
Q psy9399 39 RDLIVSSQTGSGKTAAFMLPALHK 62 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~~~~~~ 62 (453)
.-.++.||+|+|||...+-.+...
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~~r~ 52 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRLRRG 52 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 347899999999997555554433
No 117
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.64 E-value=0.0095 Score=54.94 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=24.3
Q ss_pred CCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEE
Q psy9399 171 SHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFS 210 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 210 (453)
...+++++||+|.+........+...++..+...++|+.+
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 4678999999998862223344455555444445555533
No 118
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.60 E-value=0.017 Score=52.81 Aligned_cols=25 Identities=8% Similarity=0.122 Sum_probs=18.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhhh
Q psy9399 39 RDLIVSSQTGSGKTAAFMLPALHKFA 64 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~~~~~~l~ 64 (453)
.++++.||+|+|||.+.- .++..+.
T Consensus 46 ~~lli~GpPGTGKT~~v~-~v~~~L~ 70 (318)
T 3te6_A 46 KLFYITNADDSTKFQLVN-DVMDELI 70 (318)
T ss_dssp CEEEEECCCSHHHHHHHH-HHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 569999999999997543 3444443
No 119
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.57 E-value=0.0059 Score=56.36 Aligned_cols=17 Identities=24% Similarity=0.503 Sum_probs=14.6
Q ss_pred CcEEEEcCCCchHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~ 55 (453)
..+++.||+|+|||..+
T Consensus 38 ~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp SSEEEECSSSSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 46999999999999743
No 120
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.56 E-value=0.0018 Score=54.31 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=17.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHh
Q psy9399 39 RDLIVSSQTGSGKTAAFMLPALHK 62 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~~~~~~ 62 (453)
+-.++.||+|+|||.-.+-.+-..
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~ 44 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRF 44 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH
Confidence 348899999999996444444444
No 121
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.42 E-value=0.014 Score=58.55 Aligned_cols=113 Identities=19% Similarity=0.261 Sum_probs=73.9
Q ss_pred CCcHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceE
Q psy9399 23 KPTGVQEQAIPAAISG--RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRM 100 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~~~--~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (453)
.+|..|++++..+..- ...++.|+-|.|||.+.-+. +..+.. ++
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~-~a~~~~---------------------------------~~ 220 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQL-ISRIAG---------------------------------RA 220 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHH-HHHSSS---------------------------------CE
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHH-HHHHHh---------------------------------Cc
Confidence 5788999999998863 34899999999999644333 333322 46
Q ss_pred EEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEec
Q psy9399 101 LVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180 (453)
Q Consensus 101 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE 180 (453)
+|..|+.+-+..+.+...+ .|-+..|+.+.. .....+++||||
T Consensus 221 ~vtAP~~~a~~~l~~~~~~------------------------------~i~~~~Pd~~~~-------~~~~~dlliVDE 263 (671)
T 2zpa_A 221 IVTAPAKASTDVLAQFAGE------------------------------KFRFIAPDALLA-------SDEQADWLVVDE 263 (671)
T ss_dssp EEECSSCCSCHHHHHHHGG------------------------------GCCBCCHHHHHH-------SCCCCSEEEEET
T ss_pred EEECCCHHHHHHHHHHhhC------------------------------CeEEeCchhhhh-------CcccCCEEEEEc
Confidence 8999998766554332211 122445655433 234689999999
Q ss_pred hhhhcccCChHHHHHHHhhCCCCccEEEEEeecC
Q psy9399 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLD 214 (453)
Q Consensus 181 ~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 214 (453)
|=.+. ...+..++... ..+++|.|..
T Consensus 264 AAaIp----~pll~~ll~~~----~~v~~~tTv~ 289 (671)
T 2zpa_A 264 AAAIP----APLLHQLVSRF----PRTLLTTTVQ 289 (671)
T ss_dssp GGGSC----HHHHHHHHTTS----SEEEEEEEBS
T ss_pred hhcCC----HHHHHHHHhhC----CeEEEEecCC
Confidence 99764 44555555543 3588888874
No 122
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.23 E-value=0.0076 Score=66.00 Aligned_cols=71 Identities=30% Similarity=0.345 Sum_probs=55.4
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEE
Q psy9399 23 KPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLV 102 (453)
Q Consensus 23 ~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 102 (453)
.+++-|.+++..- +++++|.|+.|||||.+.+.-++..+..... .....++++
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~-------------------------~~~~~~il~ 62 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEEN-------------------------PIDVDRLLV 62 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSS-------------------------CCCGGGEEE
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCC-------------------------CCCccceEE
Confidence 5899999999764 6789999999999999876666666655210 012348999
Q ss_pred EcCcHHHHHHHHHHHHHH
Q psy9399 103 LTPTRELALQVTAATERY 120 (453)
Q Consensus 103 l~P~~~L~~q~~~~~~~~ 120 (453)
+++|++.+.++.+.+...
T Consensus 63 ~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 63 VTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp ECSSHHHHHHHHHHHHHH
T ss_pred EeccHHHHHHHHHHHHHH
Confidence 999999999998887763
No 123
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.21 E-value=0.021 Score=51.41 Aligned_cols=52 Identities=17% Similarity=0.259 Sum_probs=28.8
Q ss_pred CCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHH--hcCCcEEEEcCCCchHHHHH
Q psy9399 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAA--ISGRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 2 ~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~--~~~~~~lv~a~TGsGKT~~~ 55 (453)
+|+++.-.+...+.+...-.. +. ...+.+... .....+++.||+|+|||..+
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~-~~-~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVEL-PL-KHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHH-HH-HCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CHHHhcCHHHHHHHHHHHHHH-Hh-hCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 466666666666666542110 00 011122221 24467999999999999744
No 124
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.16 E-value=0.057 Score=46.16 Aligned_cols=41 Identities=17% Similarity=0.256 Sum_probs=25.1
Q ss_pred CCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEee
Q psy9399 171 SHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSAT 212 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 212 (453)
....+||+||+|.+.... ...+..++...+....+|++|..
T Consensus 101 ~~~~vliiDe~~~l~~~~-~~~l~~~l~~~~~~~~~i~~~~~ 141 (226)
T 2chg_A 101 APFKIIFLDEADALTADA-QAALRRTMEMYSKSCRFILSCNY 141 (226)
T ss_dssp CSCEEEEEETGGGSCHHH-HHHHHHHHHHTTTTEEEEEEESC
T ss_pred cCceEEEEeChhhcCHHH-HHHHHHHHHhcCCCCeEEEEeCC
Confidence 456799999999875432 34455555555555555555433
No 125
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.16 E-value=0.07 Score=47.63 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=14.9
Q ss_pred CcEEEEcCCCchHHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAFM 56 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l 56 (453)
..+++.||+|+|||..+-
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 359999999999998543
No 126
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.14 E-value=0.013 Score=49.71 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=14.9
Q ss_pred CcEEEEcCCCchHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~ 55 (453)
.++++.||+|+|||..+
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 67999999999999743
No 127
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.11 E-value=0.008 Score=48.02 Aligned_cols=19 Identities=16% Similarity=0.200 Sum_probs=16.0
Q ss_pred HhcCCcEEEEcCCCchHHH
Q psy9399 35 AISGRDLIVSSQTGSGKTA 53 (453)
Q Consensus 35 ~~~~~~~lv~a~TGsGKT~ 53 (453)
...+.++++.||+|+|||.
T Consensus 24 ~~~~~~vll~G~~GtGKt~ 42 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFET 42 (143)
T ss_dssp HTCSSCEEEEEETTCCHHH
T ss_pred hCCCCcEEEECCCCccHHH
Confidence 3455779999999999997
No 128
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.052 Score=51.05 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=32.1
Q ss_pred CCCCCCCCCHHHHHHHHhC-C--CCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q psy9399 1 MNFKSIGLHELVLKALVKV-G--YTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~-~--~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~ 55 (453)
.+|++.|=-++..+.|.+. - +..|..++... +...+.+++.||+|+|||+.+
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHHH
Confidence 3688887677777777652 1 22222222111 223467999999999999854
No 129
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.88 E-value=0.061 Score=44.53 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=15.0
Q ss_pred CcEEEEcCCCchHHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAFM 56 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l 56 (453)
.++++.||+|+|||..+.
T Consensus 44 ~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp CEEEEESCGGGCHHHHHH
T ss_pred CceEEECCCCCCHHHHHH
Confidence 469999999999997543
No 130
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.84 E-value=0.031 Score=50.93 Aligned_cols=41 Identities=15% Similarity=0.261 Sum_probs=26.9
Q ss_pred CCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEe
Q psy9399 170 FSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSA 211 (453)
Q Consensus 170 ~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 211 (453)
....+++|+||+|.|.... ...+...++.-+....+|+++.
T Consensus 80 ~~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~t~ 120 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNTR 120 (305)
T ss_dssp SSSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEES
T ss_pred cCCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEEC
Confidence 3568899999999986544 3445555665555555555553
No 131
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.84 E-value=0.13 Score=42.54 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=14.7
Q ss_pred CcEEEEcCCCchHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~ 55 (453)
..+++.||+|+|||..+
T Consensus 44 ~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CceEEECCCCCCHHHHH
Confidence 56999999999999754
No 132
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.79 E-value=0.032 Score=53.79 Aligned_cols=17 Identities=29% Similarity=0.432 Sum_probs=14.7
Q ss_pred CcEEEEcCCCchHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~ 55 (453)
..+++.||+|+|||..+
T Consensus 131 ~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp CCEEEECSSSSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999744
No 133
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.76 E-value=0.038 Score=57.12 Aligned_cols=81 Identities=16% Similarity=0.121 Sum_probs=68.7
Q ss_pred CCCcEEEEeccchhHHHHHHHHhh----CCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEe-CCcccCCCCCCCcEEE
Q psy9399 268 RVGQAVVFTATKRDADIIADRLNI----SGFLAAPLHGDLHQNARNRTLENLRRGRIKILVAT-DVAARGIDVPAITHVF 342 (453)
Q Consensus 268 ~~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T-~~~~~Gvdi~~~~~Vi 342 (453)
.+.++++.++++.-+...++.+.+ .++.+..+||+++..++...++.+.+|+.+|+|+| ..+...+++.++.+||
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 357899999999988887777654 47899999999999999999999999999999999 5566678888999988
Q ss_pred EcCCCC
Q psy9399 343 NYDLPK 348 (453)
Q Consensus 343 ~~~~~~ 348 (453)
......
T Consensus 496 IDEaHr 501 (780)
T 1gm5_A 496 IDEQHR 501 (780)
T ss_dssp EESCCC
T ss_pred ecccch
Confidence 766654
No 134
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.72 E-value=0.031 Score=51.39 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=28.1
Q ss_pred CCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHH-----hcCCcEEEEcCCCchHHHHHH
Q psy9399 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAA-----ISGRDLIVSSQTGSGKTAAFM 56 (453)
Q Consensus 2 ~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~-----~~~~~~lv~a~TGsGKT~~~l 56 (453)
+|++++-.+...+.|...=. .+. ..+.+ ...+.+++.||+|+|||..+-
T Consensus 16 ~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred CHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 56777666666666654211 000 01111 123569999999999998543
No 135
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.68 E-value=0.033 Score=46.73 Aligned_cols=52 Identities=17% Similarity=0.346 Sum_probs=35.5
Q ss_pred CCccEEEEechhhhcccCC--hHHHHHHHhhCCCCccEEEEEeecChHHHHHHH
Q psy9399 171 SHLQILVLDEADRMLDMGF--INDIEKIVDATPVTRQTMLFSATLDGIVGNMAE 222 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~ 222 (453)
..+++||+||+-.....++ ...+..++...|....+|+.+--+++.+-..+.
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD 172 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLAD 172 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCS
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCc
Confidence 6799999999976555443 455666777777776677666666666655543
No 136
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.63 E-value=0.034 Score=52.40 Aligned_cols=17 Identities=35% Similarity=0.499 Sum_probs=14.7
Q ss_pred CcEEEEcCCCchHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~ 55 (453)
..+++.||+|+|||..+
T Consensus 45 ~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCEEECBCTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 46999999999999744
No 137
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.60 E-value=0.052 Score=49.53 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCchHHHHHH
Q psy9399 38 GRDLIVSSQTGSGKTAAFM 56 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~l 56 (453)
+.++++.||+|+|||..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999997543
No 138
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.56 E-value=0.011 Score=51.65 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCchHHHHH
Q psy9399 38 GRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~ 55 (453)
+..+++.||+|+|||..+
T Consensus 52 ~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456999999999999744
No 139
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.54 E-value=0.12 Score=49.45 Aligned_cols=52 Identities=15% Similarity=0.265 Sum_probs=33.4
Q ss_pred CCCCCCCCCHHHHHHHHhC-C--CCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q psy9399 1 MNFKSIGLHELVLKALVKV-G--YTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~-~--~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~ 55 (453)
.+|++.|=-++..+.|.+. - +..|-.++.. .+...+.+++.||+|+|||+.+
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~---Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATL---GIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHH---TCCCCSEEEECSCTTSSHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHC---CCCCCCceEeeCCCCCcHHHHH
Confidence 3788988888888888753 1 2222222211 1223467999999999999854
No 140
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.51 E-value=0.06 Score=50.69 Aligned_cols=17 Identities=29% Similarity=0.233 Sum_probs=14.6
Q ss_pred CcEEEEcCCCchHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~ 55 (453)
..+++.||+|+|||..+
T Consensus 46 ~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 45999999999999754
No 141
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.49 E-value=0.12 Score=49.34 Aligned_cols=51 Identities=14% Similarity=0.333 Sum_probs=33.3
Q ss_pred CCccEEEEechhhhc---ccCChHHHHHHHhhCCCCccEEEEEeecChHHHHHH
Q psy9399 171 SHLQILVLDEADRML---DMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMA 221 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~---~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~ 221 (453)
..++++|+|++-++. +..+...+..+........-++.++|+........+
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a 231 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLA 231 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHH
Confidence 578999999998643 333556666666666555667778888654333333
No 142
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.48 E-value=0.055 Score=49.60 Aligned_cols=40 Identities=18% Similarity=0.301 Sum_probs=25.1
Q ss_pred CCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEe
Q psy9399 171 SHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSA 211 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 211 (453)
....++|+||+|.+.... ...+...++..+....+|+.+.
T Consensus 109 ~~~~vliiDe~~~l~~~~-~~~L~~~le~~~~~~~~i~~~~ 148 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDA-QQALRRTMEMFSSNVRFILSCN 148 (327)
T ss_dssp CSCEEEEEETGGGSCHHH-HHHHHHHHHHTTTTEEEEEEES
T ss_pred CCCeEEEEeCCCcCCHHH-HHHHHHHHHhcCCCCeEEEEeC
Confidence 457899999999886433 3444555555555555555443
No 143
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.46 E-value=0.03 Score=52.81 Aligned_cols=16 Identities=25% Similarity=0.474 Sum_probs=14.2
Q ss_pred cEEEEcCCCchHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAF 55 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~ 55 (453)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6999999999999744
No 144
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.45 E-value=0.098 Score=49.79 Aligned_cols=52 Identities=12% Similarity=0.228 Sum_probs=30.9
Q ss_pred CCCCCCCCCHHHHHHHHhC---CCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q psy9399 1 MNFKSIGLHELVLKALVKV---GYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~---~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~ 55 (453)
.+|++.|=-+...+.|... .+..|-.++... +...+.+++.||+|+|||+.+
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHH
Confidence 3677877666666666542 122222222111 223466999999999999854
No 145
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.41 E-value=0.063 Score=47.48 Aligned_cols=52 Identities=15% Similarity=0.160 Sum_probs=29.1
Q ss_pred CCCCCCCCCHHHHHHHHhCC--CCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q psy9399 1 MNFKSIGLHELVLKALVKVG--YTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~--~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~ 55 (453)
++|+++.-.+...+.+..+- +..+..+... .+.....+++.||+|+|||..+
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---g~~~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQL---GAKVPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC---------CCCCCEEEEESCTTSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHc---CCCCCceEEEECCCCCCHHHHH
Confidence 36777776777666665420 1111111111 1123356999999999999754
No 146
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.17 E-value=0.02 Score=52.26 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=15.1
Q ss_pred CcEEEEcCCCchHHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAFM 56 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l 56 (453)
.++++.||+|+|||..+-
T Consensus 68 ~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 369999999999998543
No 147
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.09 E-value=0.13 Score=48.69 Aligned_cols=52 Identities=23% Similarity=0.309 Sum_probs=31.9
Q ss_pred CCCCCCCCCHHHHHHHHhC---CCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q psy9399 1 MNFKSIGLHELVLKALVKV---GYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~---~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~ 55 (453)
.+|++.|=-++..+.|.+. .+..|..++...+ ...+.+++.||+|+|||+.+
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHH
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHH
Confidence 3688887666666666542 2333333332221 22367999999999999854
No 148
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.06 E-value=0.055 Score=50.28 Aligned_cols=40 Identities=20% Similarity=0.311 Sum_probs=25.1
Q ss_pred CCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEe
Q psy9399 171 SHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSA 211 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 211 (453)
....++++||+|.+.... ...+...++..+....+++++.
T Consensus 132 ~~~~vliiDE~~~l~~~~-~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 132 PPYKIIILDEADSMTADA-QSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp CSCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEEES
T ss_pred CCceEEEEECCCccCHHH-HHHHHHHHHhcCCCceEEEEeC
Confidence 456899999999876432 3444555555555555665543
No 149
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.88 E-value=0.13 Score=48.18 Aligned_cols=18 Identities=33% Similarity=0.560 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCchHHHHH
Q psy9399 38 GRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~ 55 (453)
+..+++.||+|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 346999999999999743
No 150
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.80 E-value=0.066 Score=51.57 Aligned_cols=16 Identities=31% Similarity=0.492 Sum_probs=14.1
Q ss_pred cEEEEcCCCchHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAF 55 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~ 55 (453)
++++.||+|+|||..+
T Consensus 52 ~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLA 67 (447)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 5999999999999744
No 151
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.62 E-value=0.11 Score=50.51 Aligned_cols=42 Identities=17% Similarity=0.302 Sum_probs=26.2
Q ss_pred ccEEEEechhhhcccC----------ChHHHHHHHhhCCCCccEEEEEeecC
Q psy9399 173 LQILVLDEADRMLDMG----------FINDIEKIVDATPVTRQTMLFSATLD 214 (453)
Q Consensus 173 ~~~iIiDE~h~~~~~~----------~~~~~~~~~~~~~~~~~~i~~SAT~~ 214 (453)
.++|++||+|.+.... ....+...+........++++.||-.
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~ 349 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNR 349 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESC
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCC
Confidence 4689999999887532 12233444444455556777777744
No 152
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.51 E-value=0.086 Score=49.04 Aligned_cols=43 Identities=5% Similarity=0.232 Sum_probs=28.4
Q ss_pred CCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEeecC
Q psy9399 171 SHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLD 214 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 214 (453)
.+..++|+||+|.+ +......+...++..+....+|+.|..+.
T Consensus 133 ~~~~vlilDE~~~L-~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 133 HRYKCVIINEANSL-TKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp -CCEEEEEECTTSS-CHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCeEEEEeCcccc-CHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 46789999999984 44445556666666666666666665544
No 153
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.47 E-value=0.34 Score=41.74 Aligned_cols=16 Identities=31% Similarity=0.437 Sum_probs=13.9
Q ss_pred cEEEEcCCCchHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAF 55 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~ 55 (453)
.+++.||+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999754
No 154
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.42 E-value=0.14 Score=47.22 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=14.7
Q ss_pred CcEEEEcCCCchHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~ 55 (453)
.++++.||+|+|||..+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 46999999999999854
No 155
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.29 E-value=0.39 Score=44.63 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=15.1
Q ss_pred CcEEEEcCCCchHHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAFM 56 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l 56 (453)
+.+++.||+|+|||..+-
T Consensus 85 ~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCEEEECSTTSCHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 469999999999998543
No 156
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.24 E-value=0.17 Score=48.07 Aligned_cols=80 Identities=11% Similarity=0.164 Sum_probs=65.5
Q ss_pred CCCCcEEEEeccchhHHHHHHHHhh---CCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeC-Cccc---CCCCCCCc
Q psy9399 267 KRVGQAVVFTATKRDADIIADRLNI---SGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATD-VAAR---GIDVPAIT 339 (453)
Q Consensus 267 ~~~~~~lvf~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~~~---Gvdi~~~~ 339 (453)
..+.++||.++++.-+..+++.++. .++.+..++|+.+..++....+.+.+|+.+|+|+|. .+.. -++...++
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcccccc
Confidence 4567999999999999999999987 578999999999999999999999999999999994 3311 24555778
Q ss_pred EEEEcCC
Q psy9399 340 HVFNYDL 346 (453)
Q Consensus 340 ~Vi~~~~ 346 (453)
+||....
T Consensus 142 ~iViDEa 148 (414)
T 3oiy_A 142 FVFVDDV 148 (414)
T ss_dssp EEEESCH
T ss_pred EEEEeCh
Confidence 8876554
No 157
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.24 E-value=0.47 Score=45.25 Aligned_cols=50 Identities=18% Similarity=0.323 Sum_probs=28.4
Q ss_pred CccEEEEechhhhcc-cCChHHHHHHHhhCCCCccEEEEEeecChHHHHHH
Q psy9399 172 HLQILVLDEADRMLD-MGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMA 221 (453)
Q Consensus 172 ~~~~iIiDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~ 221 (453)
.++++|+|.+=++.. ......+..+........-++.+.|+.........
T Consensus 182 ~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a 232 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA 232 (443)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH
T ss_pred CCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH
Confidence 478999998854332 22344455555554445557777787654433333
No 158
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.18 E-value=0.18 Score=43.40 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCchHHHHHHHH
Q psy9399 37 SGRDLIVSSQTGSGKTAAFMLP 58 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~~l~~ 58 (453)
.|.-+++.||+|+|||......
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l 43 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHF 43 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHH
Confidence 3456899999999999744333
No 159
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.98 E-value=0.21 Score=46.08 Aligned_cols=39 Identities=18% Similarity=0.433 Sum_probs=26.1
Q ss_pred CCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEE
Q psy9399 171 SHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFS 210 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 210 (453)
...+++|+||+|.+.... ...+...++..+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNAA-QNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 357899999999886432 445556666666666665554
No 160
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=93.53 E-value=0.43 Score=46.23 Aligned_cols=51 Identities=12% Similarity=0.255 Sum_probs=39.0
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHH
Q psy9399 37 SGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~ 116 (453)
.+....+.+-||||||++.... .... +..+|||+|+...+.|+++.
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l-~~~~---------------------------------~~p~lvv~~~~~~A~~l~~~ 58 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEI-AERH---------------------------------AGPVVLIAPDMQNALRLHDE 58 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHH-HHHS---------------------------------SSCEEEEESSHHHHHHHHHH
T ss_pred CCCeEEEeCCCchHHHHHHHHH-HHHh---------------------------------CCCEEEEeCCHHHHHHHHHH
Confidence 3456899999999999843322 2221 23689999999999999999
Q ss_pred HHHHh
Q psy9399 117 TERYG 121 (453)
Q Consensus 117 ~~~~~ 121 (453)
+..+.
T Consensus 59 l~~~~ 63 (483)
T 3hjh_A 59 ISQFT 63 (483)
T ss_dssp HHHTC
T ss_pred HHhhC
Confidence 99875
No 161
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.46 E-value=0.18 Score=45.94 Aligned_cols=39 Identities=18% Similarity=0.263 Sum_probs=24.2
Q ss_pred CccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEEe
Q psy9399 172 HLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSA 211 (453)
Q Consensus 172 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 211 (453)
+..++|+||+|.+.... ...+...++..+....+|++|.
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~~ 145 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFACN 145 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEES
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEeC
Confidence 47899999999876432 2334445555555555665553
No 162
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.39 E-value=0.36 Score=46.56 Aligned_cols=26 Identities=27% Similarity=0.218 Sum_probs=18.6
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHh
Q psy9399 37 SGRDLIVSSQTGSGKTAAFMLPALHK 62 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~~l~~~~~~ 62 (453)
.|.-++|.|++|+|||...+..+...
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34559999999999997554444443
No 163
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.32 E-value=0.34 Score=45.73 Aligned_cols=19 Identities=32% Similarity=0.450 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCchHHHHHH
Q psy9399 38 GRDLIVSSQTGSGKTAAFM 56 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~l 56 (453)
..++++.||+|+|||..+-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3579999999999998543
No 164
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=93.27 E-value=0.29 Score=53.04 Aligned_cols=103 Identities=14% Similarity=0.097 Sum_probs=76.6
Q ss_pred EEEEEEcchhhHHHHH--HHHHhhCCCCcEEEEeccchhHHHHHHHHhh----CCCceeecCCCCCHHHHHHHHHHHhcC
Q psy9399 245 QSILFVDDILHKNRLL--DYLLRDKRVGQAVVFTATKRDADIIADRLNI----SGFLAAPLHGDLHQNARNRTLENLRRG 318 (453)
Q Consensus 245 ~~~~~~~~~~~~~~~~--~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g 318 (453)
..++..+...-|..+. ..+.....+.+++|.++++.-+...++.+.+ .++.+..+++..+..++...++.+.+|
T Consensus 626 d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g 705 (1151)
T 2eyq_A 626 DRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEG 705 (1151)
T ss_dssp EEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcC
Confidence 3445555555444332 2222234557999999999988888877764 357889999999999999999999999
Q ss_pred CccEEEEe-CCcccCCCCCCCcEEEEcCCC
Q psy9399 319 RIKILVAT-DVAARGIDVPAITHVFNYDLP 347 (453)
Q Consensus 319 ~~~vLv~T-~~~~~Gvdi~~~~~Vi~~~~~ 347 (453)
+.+|+|+| +.+...+.+.++.+||.....
T Consensus 706 ~~dIvV~T~~ll~~~~~~~~l~lvIiDEaH 735 (1151)
T 2eyq_A 706 KIDILIGTHKLLQSDVKFKDLGLLIVDEEH 735 (1151)
T ss_dssp CCSEEEECTHHHHSCCCCSSEEEEEEESGG
T ss_pred CCCEEEECHHHHhCCccccccceEEEechH
Confidence 99999999 666677888888888765543
No 165
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.09 E-value=0.1 Score=53.82 Aligned_cols=53 Identities=19% Similarity=0.228 Sum_probs=32.4
Q ss_pred CCCCCCCCHHHHHHHHhC-CCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q psy9399 2 NFKSIGLHELVLKALVKV-GYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 2 ~~~~l~l~~~~~~~l~~~-~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~ 55 (453)
+|+++|..++..+.|... -++..++.+..-+ .+...+.+++.||+|+|||+.+
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~-g~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKF-GMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS-CCCCCSCCEEESSTTSSHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc-CCCCCceEEEecCCCCCchHHH
Confidence 688888888888888763 2221122111000 0112356999999999999743
No 166
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.76 E-value=0.34 Score=47.64 Aligned_cols=41 Identities=15% Similarity=0.265 Sum_probs=25.5
Q ss_pred CCccEEEEechhhhcccCC--hHHHHHHHhhCCCCccEEEEEeec
Q psy9399 171 SHLQILVLDEADRMLDMGF--INDIEKIVDATPVTRQTMLFSATL 213 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~~SAT~ 213 (453)
....+|||||+|.+..... ...+..++... ...+|+++++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCC
Confidence 4567999999999875432 23444444432 33577777764
No 167
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.71 E-value=0.079 Score=50.50 Aligned_cols=52 Identities=13% Similarity=0.257 Sum_probs=34.6
Q ss_pred CCCCCCCCCHHHHHHHHhC---CCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q psy9399 1 MNFKSIGLHELVLKALVKV---GYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~---~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~ 55 (453)
.+|++.|-.+...+.|... .+..|..++... +...+.+++.||+|+|||+.+
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g---~~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMG---IRAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeeEEECcCCCCHHHHH
Confidence 4789998888888877652 233333333221 123467999999999999854
No 168
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.65 E-value=0.5 Score=44.67 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=13.9
Q ss_pred cEEE--EcCCCchHHHHHH
Q psy9399 40 DLIV--SSQTGSGKTAAFM 56 (453)
Q Consensus 40 ~~lv--~a~TGsGKT~~~l 56 (453)
.++| .||.|+|||....
T Consensus 52 ~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp EEEEECTTCCSSSHHHHHH
T ss_pred EEEEeCcCcCCCCHHHHHH
Confidence 4888 8999999997543
No 169
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=92.56 E-value=0.61 Score=43.41 Aligned_cols=40 Identities=15% Similarity=0.301 Sum_probs=24.2
Q ss_pred CCCccEEEEechhhhcccCChHHHHHHHhhCCCCccEEEEE
Q psy9399 170 FSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFS 210 (453)
Q Consensus 170 ~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 210 (453)
.....++|+||+|.+.... ...+...++..+....+|+.+
T Consensus 117 ~~~~~vliiDe~~~l~~~~-~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 117 RGRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSSEEEEEECGGGSCHHH-HHHHHHHHHSCCSSEEEEEEE
T ss_pred cCCeEEEEEECcchhcHHH-HHHHHHHHhcCCCceEEEEEe
Confidence 3457899999999876433 344444555544444444444
No 170
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=92.41 E-value=0.4 Score=40.91 Aligned_cols=75 Identities=19% Similarity=0.186 Sum_probs=54.6
Q ss_pred CCcEEEEeccchhHHHHHHHHhhC-----CCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeC-Cc-----ccCCCCCC
Q psy9399 269 VGQAVVFTATKRDADIIADRLNIS-----GFLAAPLHGDLHQNARNRTLENLRRGRIKILVATD-VA-----ARGIDVPA 337 (453)
Q Consensus 269 ~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~-----~~Gvdi~~ 337 (453)
+.++||.++++.-+..+++.++.. +..+..++|+.+..+.. +.+.++..+|+|+|. .+ ...+++.+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH---HHHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHH---HHHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 348999999999999888887653 67889999998865543 344556779999994 22 23456677
Q ss_pred CcEEEEcCC
Q psy9399 338 ITHVFNYDL 346 (453)
Q Consensus 338 ~~~Vi~~~~ 346 (453)
+++||....
T Consensus 159 ~~~lViDEa 167 (220)
T 1t6n_A 159 IKHFILDEC 167 (220)
T ss_dssp CCEEEEESH
T ss_pred CCEEEEcCH
Confidence 888776544
No 171
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=92.26 E-value=6 Score=36.08 Aligned_cols=30 Identities=10% Similarity=0.149 Sum_probs=20.3
Q ss_pred cHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q psy9399 25 TGVQEQAIPAAISGRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 25 ~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~ 55 (453)
|..+.+.+.. +....++|.||.|+|||...
T Consensus 18 R~~el~~L~~-l~~~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 18 REKEIEKLKG-LRAPITLVLGLRRTGKSSII 47 (357)
T ss_dssp CHHHHHHHHH-TCSSEEEEEESTTSSHHHHH
T ss_pred hHHHHHHHHH-hcCCcEEEECCCCCCHHHHH
Confidence 3344444444 44457999999999999743
No 172
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=92.12 E-value=0.08 Score=48.30 Aligned_cols=17 Identities=41% Similarity=0.655 Sum_probs=14.4
Q ss_pred cEEEEcCCCchHHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAFM 56 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~l 56 (453)
++++.||+|+|||..+.
T Consensus 40 ~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAI 56 (319)
T ss_dssp CEEEESSSSSSHHHHHH
T ss_pred eEEEECcCCcCHHHHHH
Confidence 49999999999997543
No 173
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.12 E-value=0.42 Score=41.42 Aligned_cols=24 Identities=21% Similarity=0.128 Sum_probs=17.9
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHH
Q psy9399 37 SGRDLIVSSQTGSGKTAAFMLPAL 60 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~~l~~~~ 60 (453)
.|.-+.+.||+|+|||......+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 345699999999999985544443
No 174
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.09 E-value=0.18 Score=46.39 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=18.8
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHh
Q psy9399 37 SGRDLIVSSQTGSGKTAAFMLPALHK 62 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~~l~~~~~~ 62 (453)
.|.-++|.|++|+|||..++-.+...
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44559999999999997555444443
No 175
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.85 E-value=0.14 Score=40.71 Aligned_cols=20 Identities=10% Similarity=0.202 Sum_probs=16.5
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q psy9399 36 ISGRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 36 ~~~~~~lv~a~TGsGKT~~~ 55 (453)
..+.++++.||+|+|||..+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 35567999999999999743
No 176
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=91.76 E-value=0.96 Score=39.50 Aligned_cols=81 Identities=21% Similarity=0.266 Sum_probs=56.1
Q ss_pred HHHhhCCCCcEEEEeccchhHHHHHHHHhhC----CCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeC-Cc------c
Q psy9399 262 YLLRDKRVGQAVVFTATKRDADIIADRLNIS----GFLAAPLHGDLHQNARNRTLENLRRGRIKILVATD-VA------A 330 (453)
Q Consensus 262 ~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~------~ 330 (453)
.+.....+.++||.++++.-+..+++.++.. +..+..++|+.+.......+ .+..+|+|+|. .+ .
T Consensus 104 ~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~ 179 (249)
T 3ber_A 104 ALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENT 179 (249)
T ss_dssp HHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHS
T ss_pred HHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcC
Confidence 3344444568999999999998888777653 77888899998765543332 24678999993 22 1
Q ss_pred cCCCCCCCcEEEEcCC
Q psy9399 331 RGIDVPAITHVFNYDL 346 (453)
Q Consensus 331 ~Gvdi~~~~~Vi~~~~ 346 (453)
.++++..+++||....
T Consensus 180 ~~~~l~~~~~lViDEa 195 (249)
T 3ber_A 180 KGFNLRALKYLVMDEA 195 (249)
T ss_dssp TTCCCTTCCEEEECSH
T ss_pred CCcCccccCEEEEcCh
Confidence 3567777888776443
No 177
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=91.46 E-value=3 Score=40.96 Aligned_cols=142 Identities=15% Similarity=0.051 Sum_probs=88.3
Q ss_pred EEEEEcchhhHHH--HHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccEE
Q psy9399 246 SILFVDDILHKNR--LLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKIL 323 (453)
Q Consensus 246 ~~~~~~~~~~~~~--~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vL 323 (453)
.+...++..-|.. .+..+. ..+++||.++++.-+....+.|+..++.+..++++.+..++..+...+..|..+|+
T Consensus 43 ~lv~apTGsGKTl~~~lp~l~---~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~il 119 (523)
T 1oyw_A 43 CLVVMPTGGGKSLCYQIPALL---LNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLL 119 (523)
T ss_dssp EEEECSCHHHHHHHHHHHHHH---SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEE
T ss_pred EEEECCCCcHHHHHHHHHHHH---hCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEE
Confidence 3444455555543 222222 24789999999999999999999999999999999999999999999999999999
Q ss_pred EEeC-Ccc-----cCCCCCCCcEEEEcCCC----C--ChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHHHhhc
Q psy9399 324 VATD-VAA-----RGIDVPAITHVFNYDLP----K--FPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQ 390 (453)
Q Consensus 324 v~T~-~~~-----~Gvdi~~~~~Vi~~~~~----~--~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 390 (453)
++|. .+. ..++..++.+||..... + +...-...+++..+.-.....+.+...........+.+.+..
T Consensus 120 v~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~ 198 (523)
T 1oyw_A 120 YIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGL 198 (523)
T ss_dssp EECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTC
T ss_pred EECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCC
Confidence 9994 221 12333456666653322 1 111112334433222122345555555555444555555543
No 178
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.41 E-value=0.42 Score=45.95 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=18.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHh
Q psy9399 38 GRDLIVSSQTGSGKTAAFMLPALHK 62 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~l~~~~~~ 62 (453)
|.-++|.|++|+|||...+-.+...
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3458999999999997555444443
No 179
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.34 E-value=0.13 Score=49.17 Aligned_cols=53 Identities=21% Similarity=0.286 Sum_probs=31.9
Q ss_pred CCCCCCCCCHHHHHHHHhC---CCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q psy9399 1 MNFKSIGLHELVLKALVKV---GYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFM 56 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~---~~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~l 56 (453)
.+|++.|=-++..+.|... .+..|..++... +...+.+++.||+|+|||+.+-
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHHH
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHHH
Confidence 3688887667766666542 122222222111 2234679999999999998543
No 180
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=91.34 E-value=0.75 Score=45.98 Aligned_cols=123 Identities=15% Similarity=0.140 Sum_probs=80.9
Q ss_pred CCcEEEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHH--hcCCccEEEEeC-Ccc----------cCCCC
Q psy9399 269 VGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENL--RRGRIKILVATD-VAA----------RGIDV 335 (453)
Q Consensus 269 ~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f--~~g~~~vLv~T~-~~~----------~Gvdi 335 (453)
.+++||.++++.-+....+.|...|+.+..++|+++..++..+...+ ..+..+|+++|. .+. ...+.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~ 163 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEA 163 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHT
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhc
Confidence 46899999999999999999999999999999999999998888888 578899999995 221 12234
Q ss_pred CCCcEEEEcCCCC-------ChhHHHHHhhhccCCCCCccEEEEeChhhHHHHHHHHHHhhcCC
Q psy9399 336 PAITHVFNYDLPK-------FPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQI 392 (453)
Q Consensus 336 ~~~~~Vi~~~~~~-------~~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (453)
..+.+||...... -..+| ..++...+.......+.+...........+..++...-
T Consensus 164 ~~i~~iViDEAH~is~~g~dfr~~~-~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~ 226 (591)
T 2v1x_A 164 RRFTRIAVDEVHCCSQWGHDFRPDY-KALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEK 226 (591)
T ss_dssp TCEEEEEEETGGGGSTTCTTCCGGG-GGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCS
T ss_pred cCCcEEEEECcccccccccccHHHH-HHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCC
Confidence 4666666533221 01222 22232222212234555555555555556666665543
No 181
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=91.29 E-value=0.33 Score=44.30 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=14.8
Q ss_pred CcEEEEcCCCchHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~ 55 (453)
..+++.||+|+|||..+
T Consensus 39 ~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCEEECCTTCCCHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 56999999999999743
No 182
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.13 E-value=0.17 Score=57.16 Aligned_cols=32 Identities=22% Similarity=0.215 Sum_probs=24.1
Q ss_pred HHHHhc------CCcEEEEcCCCchHHHHHHHHHHHhh
Q psy9399 32 IPAAIS------GRDLIVSSQTGSGKTAAFMLPALHKF 63 (453)
Q Consensus 32 ~~~~~~------~~~~lv~a~TGsGKT~~~l~~~~~~l 63 (453)
++.++. ++.+++.+|+|+|||..+...+.+..
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~ 1452 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 1452 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 555555 56799999999999987766655543
No 183
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=91.08 E-value=0.17 Score=47.02 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=22.4
Q ss_pred HHHHHhc------CCcEEEEcCCCchHHHHHHHHHHHh
Q psy9399 31 AIPAAIS------GRDLIVSSQTGSGKTAAFMLPALHK 62 (453)
Q Consensus 31 ~~~~~~~------~~~~lv~a~TGsGKT~~~l~~~~~~ 62 (453)
.++.++. +.-+++.||+|+|||...+..+...
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4555665 2459999999999998655555443
No 184
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.04 E-value=0.25 Score=43.16 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=17.9
Q ss_pred HhcCCcEEEEcCCCchHHHHHHHH
Q psy9399 35 AISGRDLIVSSQTGSGKTAAFMLP 58 (453)
Q Consensus 35 ~~~~~~~lv~a~TGsGKT~~~l~~ 58 (453)
+..|.-+.+.||+|+|||......
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i 50 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHH
Confidence 345566999999999999754333
No 185
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=91.02 E-value=0.55 Score=50.61 Aligned_cols=80 Identities=11% Similarity=0.164 Sum_probs=65.7
Q ss_pred CCCCcEEEEeccchhHHHHHHHHhh---CCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeC-Cccc---CCCCCCCc
Q psy9399 267 KRVGQAVVFTATKRDADIIADRLNI---SGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATD-VAAR---GIDVPAIT 339 (453)
Q Consensus 267 ~~~~~~lvf~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~~~---Gvdi~~~~ 339 (453)
..+.++||.+++++-+..+++.++. .++.+..+||+++..+|...++.+.+|..+|+|+|. .+.. -+++.+++
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~ 198 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 198 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCS
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcC
Confidence 4567899999999999999999988 567899999999998889999999999999999994 3311 14456788
Q ss_pred EEEEcCC
Q psy9399 340 HVFNYDL 346 (453)
Q Consensus 340 ~Vi~~~~ 346 (453)
+||....
T Consensus 199 ~lViDEa 205 (1104)
T 4ddu_A 199 FVFVDDV 205 (1104)
T ss_dssp EEEESCH
T ss_pred EEEEeCC
Confidence 8886554
No 186
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=90.80 E-value=1.3 Score=35.58 Aligned_cols=73 Identities=18% Similarity=0.285 Sum_probs=52.4
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHh----cCCCCEEEeChHHHHHHHhcCCCCCCC
Q psy9399 97 QPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLL----SRNPEILLATPGRLIDHMNSGKINFSH 172 (453)
Q Consensus 97 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~~ 172 (453)
+.++||.|+++.-+..+.+.+...+ +.+..++|+....+....+ .+...|+|+|. .....+++..
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~~-----~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gld~~~ 103 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDLG-----YPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD------VAARGIDIEN 103 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHTT-----CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG------GGTTTCCCSC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHcC-----CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC------hhhcCCchhc
Confidence 3489999999999999999888753 7788888887655443322 34678999993 2233446778
Q ss_pred ccEEEEec
Q psy9399 173 LQILVLDE 180 (453)
Q Consensus 173 ~~~iIiDE 180 (453)
+++||.-+
T Consensus 104 ~~~Vi~~~ 111 (163)
T 2hjv_A 104 ISLVINYD 111 (163)
T ss_dssp CSEEEESS
T ss_pred CCEEEEeC
Confidence 88888644
No 187
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=90.12 E-value=0.3 Score=40.05 Aligned_cols=121 Identities=13% Similarity=0.143 Sum_probs=71.7
Q ss_pred cHHHHHHHHHHhcCC--cEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEE
Q psy9399 25 TGVQEQAIPAAISGR--DLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLV 102 (453)
Q Consensus 25 ~~~Q~~~~~~~~~~~--~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 102 (453)
.+-|..++..++... -.+|.++-|++||...+..++..... .|.++.+
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~------------------------------~Gr~V~v 85 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE------------------------------QGREVQI 85 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH------------------------------TTCCEEE
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh------------------------------cCeEEEE
Confidence 366888888887554 38889999999998754444443332 3668999
Q ss_pred EcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEEEEechh
Q psy9399 103 LTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182 (453)
Q Consensus 103 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~h 182 (453)
|.|+..-...+.+....-+ +++ |. ..+......|..=+++||||+.
T Consensus 86 LAp~~~s~~~l~~~~~l~~----------------------------~t~--t~----~~ll~~~~~~tp~s~lIVD~Ae 131 (189)
T 2l8b_A 86 IAADRRSQMNMKQDERLSG----------------------------ELI--TG----RRQLLEGMAFTPGSTVIVDQGE 131 (189)
T ss_dssp ECSTTHHHHHHSCTTTCSS----------------------------CSS--ST----TTTTTTSCCCCCCCEEEEEESS
T ss_pred EcCchHHHHHHHhhcCcCc----------------------------cee--eh----hhhhcCCCCCCCCCEEEEechh
Confidence 9999777665543221100 011 11 1122222234566799999999
Q ss_pred hhcccCChHHHHHHHhhCCCCccEEEEEee
Q psy9399 183 RMLDMGFINDIEKIVDATPVTRQTMLFSAT 212 (453)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 212 (453)
.+...+....+ -.+...+.|+|++--+
T Consensus 132 kLS~kE~~~Ll---d~A~~~naqvvll~~~ 158 (189)
T 2l8b_A 132 KLSLKETLTLL---DGAARHNVQVLITDSG 158 (189)
T ss_dssp SHHHHHHHHHH---HHHHHTTCCEEEEESS
T ss_pred hcCHHHHHHHH---HHHHhcCCEEEEeCCc
Confidence 88754322222 2233444677777654
No 188
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=89.90 E-value=0.58 Score=42.37 Aligned_cols=23 Identities=17% Similarity=-0.052 Sum_probs=18.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHHh
Q psy9399 40 DLIVSSQTGSGKTAAFMLPALHK 62 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~l~~~~~~ 62 (453)
-+++.+|+|+|||...+..+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999998666655544
No 189
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=89.56 E-value=0.82 Score=39.30 Aligned_cols=74 Identities=14% Similarity=0.101 Sum_probs=52.4
Q ss_pred CCCCcEEEEeccchhHHHHHHHHhhC-----CCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeC-Cc-----ccCCCC
Q psy9399 267 KRVGQAVVFTATKRDADIIADRLNIS-----GFLAAPLHGDLHQNARNRTLENLRRGRIKILVATD-VA-----ARGIDV 335 (453)
Q Consensus 267 ~~~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~-----~~Gvdi 335 (453)
..+.++||.+++++-+..+++.++.. +..+..++|+.+..++...+ ...+|+|+|. .+ ...+++
T Consensus 90 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~ 164 (230)
T 2oxc_A 90 NLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNP 164 (230)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCG
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCccc
Confidence 44568999999999999988888753 67788899998876554433 2578999994 22 124455
Q ss_pred CCCcEEEEcC
Q psy9399 336 PAITHVFNYD 345 (453)
Q Consensus 336 ~~~~~Vi~~~ 345 (453)
.+++++|...
T Consensus 165 ~~~~~lViDE 174 (230)
T 2oxc_A 165 GSIRLFILDE 174 (230)
T ss_dssp GGCCEEEESS
T ss_pred ccCCEEEeCC
Confidence 6677766533
No 190
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=89.51 E-value=1.8 Score=35.22 Aligned_cols=71 Identities=15% Similarity=0.235 Sum_probs=51.7
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHh----cCCCCEEEeChHHHHHHHhcCCCCCCC
Q psy9399 97 QPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLL----SRNPEILLATPGRLIDHMNSGKINFSH 172 (453)
Q Consensus 97 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~~ 172 (453)
..++||.|+++..+..+.+.+...+ +.+..++|+....+....+ .+..+|+|+|. .....+++..
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~~-----~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~------~~~~Gid~~~ 102 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQDG-----HQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN------VCARGIDVKQ 102 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTTT-----CCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC------SCCTTTCCTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC-----CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec------chhcCCCccc
Confidence 4589999999999999998887653 6788888887765543332 34678999993 2233446778
Q ss_pred ccEEEE
Q psy9399 173 LQILVL 178 (453)
Q Consensus 173 ~~~iIi 178 (453)
+++||.
T Consensus 103 ~~~Vi~ 108 (175)
T 2rb4_A 103 VTIVVN 108 (175)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888885
No 191
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=89.50 E-value=2.3 Score=35.37 Aligned_cols=71 Identities=17% Similarity=0.284 Sum_probs=51.3
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHh----cCCCCEEEeChHHHHHHHhcCCCCCCCc
Q psy9399 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLL----SRNPEILLATPGRLIDHMNSGKINFSHL 173 (453)
Q Consensus 98 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~~~ 173 (453)
.++||.|+++.-+..+.+.+...+ +.+..++|+....+....+ .+...|+|+|. .+. ..+++..+
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~g-----~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~-~Gldi~~v 123 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLKG-----VEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VAS-KGLDFPAI 123 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHHT-----CCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHH-TTCCCCCC
T ss_pred CCEEEEECCHHHHHHHHHHHHHcC-----CcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chh-cCCCcccC
Confidence 479999999999999999888764 7788888887765443322 34678999992 222 23467788
Q ss_pred cEEEEe
Q psy9399 174 QILVLD 179 (453)
Q Consensus 174 ~~iIiD 179 (453)
++||.-
T Consensus 124 ~~VI~~ 129 (191)
T 2p6n_A 124 QHVINY 129 (191)
T ss_dssp SEEEES
T ss_pred CEEEEe
Confidence 887763
No 192
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=89.48 E-value=0.13 Score=46.67 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=29.3
Q ss_pred CCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHH--HhcCCcEEEEcCCCchHHHHH
Q psy9399 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPA--AISGRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 2 ~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~--~~~~~~~lv~a~TGsGKT~~~ 55 (453)
+|++++-.+...+.|...-. .+-.+. +.+.. +..++.+++.||+|+|||..+
T Consensus 13 ~~~di~G~~~~~~~l~~~v~-~~~~~~-~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQ-YPVEHP-DKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHH-HHHHCH-HHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHH-HHhhCH-HHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 57777766666666654210 000001 11111 224467999999999999744
No 193
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=89.20 E-value=1.8 Score=34.84 Aligned_cols=73 Identities=14% Similarity=0.256 Sum_probs=52.1
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHh----cCCCCEEEeChHHHHHHHhcCCCCCCC
Q psy9399 97 QPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLL----SRNPEILLATPGRLIDHMNSGKINFSH 172 (453)
Q Consensus 97 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~~ 172 (453)
..++||.|+++.-+..+.+.+...+ +.+..++|+....+....+ .+...|+|+|. .....+++..
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~~-----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~G~d~~~ 98 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRNDK-----FTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD------LLARGIDVQQ 98 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHTT-----CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG------GGTTTCCCCS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC-----CCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC------hhhcCCCccc
Confidence 4489999999999999998887753 6788888887755543322 34678999993 2233446778
Q ss_pred ccEEEEec
Q psy9399 173 LQILVLDE 180 (453)
Q Consensus 173 ~~~iIiDE 180 (453)
+++||.-+
T Consensus 99 ~~~Vi~~~ 106 (165)
T 1fuk_A 99 VSLVINYD 106 (165)
T ss_dssp CSEEEESS
T ss_pred CCEEEEeC
Confidence 88887644
No 194
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=89.15 E-value=0.35 Score=44.81 Aligned_cols=30 Identities=33% Similarity=0.310 Sum_probs=20.8
Q ss_pred HHHHHHhc-C-----CcEEEEcCCCchHHHHHHHHH
Q psy9399 30 QAIPAAIS-G-----RDLIVSSQTGSGKTAAFMLPA 59 (453)
Q Consensus 30 ~~~~~~~~-~-----~~~lv~a~TGsGKT~~~l~~~ 59 (453)
..++.++. | .-++|.||+|+|||...+..+
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la 82 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAI 82 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHH
Confidence 34666665 3 348999999999997544433
No 195
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=88.77 E-value=0.6 Score=43.46 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=21.9
Q ss_pred HHHHHhc------CCcEEEEcCCCchHHHHHHHHHHHh
Q psy9399 31 AIPAAIS------GRDLIVSSQTGSGKTAAFMLPALHK 62 (453)
Q Consensus 31 ~~~~~~~------~~~~lv~a~TGsGKT~~~l~~~~~~ 62 (453)
.++.++. +.-++|.|++|+|||..++..+...
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 4555555 2458999999999998555544443
No 196
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=88.69 E-value=1.9 Score=36.50 Aligned_cols=71 Identities=18% Similarity=0.308 Sum_probs=52.3
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHh----cCCCCEEEeChHHHHHHHhcCCCCCCC
Q psy9399 97 QPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLL----SRNPEILLATPGRLIDHMNSGKINFSH 172 (453)
Q Consensus 97 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~~ 172 (453)
+.++||.|+++.-+..+.+.+...+ +.+..++|+....+....+ .+..+|+|+|. .....+++..
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~~-----~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~------~~~~Gidi~~ 99 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRLG-----HPAQALHGDLSQGERERVLGAFRQGEVRVLVATD------VAARGLDIPQ 99 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHT-----CCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT------TTTCSSSCCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcC-----CCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC------hhhcCCCCcc
Confidence 4489999999999999998888764 7788899987765544332 34678999993 2333456778
Q ss_pred ccEEEE
Q psy9399 173 LQILVL 178 (453)
Q Consensus 173 ~~~iIi 178 (453)
+++||.
T Consensus 100 v~~Vi~ 105 (212)
T 3eaq_A 100 VDLVVH 105 (212)
T ss_dssp BSEEEE
T ss_pred CcEEEE
Confidence 888874
No 197
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=88.19 E-value=0.55 Score=40.72 Aligned_cols=26 Identities=19% Similarity=0.143 Sum_probs=18.9
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHh
Q psy9399 37 SGRDLIVSSQTGSGKTAAFMLPALHK 62 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~~l~~~~~~ 62 (453)
.|.-+++.||+|+|||...+..+...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 44568999999999998554444443
No 198
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=87.95 E-value=1.5 Score=36.75 Aligned_cols=74 Identities=15% Similarity=0.081 Sum_probs=51.1
Q ss_pred CCCcEEEEeccchhHHHHHHHHhhC-----CCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeC-Cc----cc-CCCCC
Q psy9399 268 RVGQAVVFTATKRDADIIADRLNIS-----GFLAAPLHGDLHQNARNRTLENLRRGRIKILVATD-VA----AR-GIDVP 336 (453)
Q Consensus 268 ~~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~----~~-Gvdi~ 336 (453)
.+.+++|.++++.-+..+++.+... +..+..++|+.+..+.... + .+..+|+|+|. .+ .. .+++.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~ 145 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVD 145 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCcc
Confidence 4458999999999999888887642 5678888998876543222 2 34678999994 22 22 34566
Q ss_pred CCcEEEEcC
Q psy9399 337 AITHVFNYD 345 (453)
Q Consensus 337 ~~~~Vi~~~ 345 (453)
+++++|...
T Consensus 146 ~~~~lViDE 154 (206)
T 1vec_A 146 HVQMIVLDE 154 (206)
T ss_dssp TCCEEEEET
T ss_pred cCCEEEEEC
Confidence 778877644
No 199
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=87.75 E-value=1.1 Score=42.41 Aligned_cols=36 Identities=22% Similarity=0.380 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhc--CCcEEEEcCCCchHHHHHHHHHHHh
Q psy9399 26 GVQEQAIPAAIS--GRDLIVSSQTGSGKTAAFMLPALHK 62 (453)
Q Consensus 26 ~~Q~~~~~~~~~--~~~~lv~a~TGsGKT~~~l~~~~~~ 62 (453)
+.+..++..+.. +..++|.||||||||.. +..++..
T Consensus 153 ~~~~~~L~~l~~~~ggii~I~GpnGSGKTTl-L~allg~ 190 (418)
T 1p9r_A 153 AHNHDNFRRLIKRPHGIILVTGPTGSGKSTT-LYAGLQE 190 (418)
T ss_dssp HHHHHHHHHHHTSSSEEEEEECSTTSCHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHhh
Confidence 445555555543 33489999999999973 3444443
No 200
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=87.62 E-value=0.63 Score=39.48 Aligned_cols=34 Identities=24% Similarity=0.096 Sum_probs=27.9
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHH
Q psy9399 21 YTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAA 54 (453)
Q Consensus 21 ~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~ 54 (453)
+..-+..|..++..+..|.-+.+.||.|+|||..
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHH
Confidence 4444566778899998888899999999999974
No 201
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=87.59 E-value=0.15 Score=45.54 Aligned_cols=51 Identities=20% Similarity=0.246 Sum_probs=28.0
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCcHH-HHHHHHHHh--cCCcEEEEcCCCchHHHH
Q psy9399 1 MNFKSIGLHELVLKALVKVGYTKPTGV-QEQAIPAAI--SGRDLIVSSQTGSGKTAA 54 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~~~~~~~~-Q~~~~~~~~--~~~~~lv~a~TGsGKT~~ 54 (453)
.+|+++|-.+++.+.|...=. .++ ..+++..+- -.+.+++.||+|+|||..
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAIL---APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp -----CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 368888877777777765211 111 122333321 224499999999999974
No 202
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=87.07 E-value=2.1 Score=34.89 Aligned_cols=73 Identities=15% Similarity=0.224 Sum_probs=52.1
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHh----cCCCCEEEeChHHHHHHHhcCCCCCCC
Q psy9399 97 QPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLL----SRNPEILLATPGRLIDHMNSGKINFSH 172 (453)
Q Consensus 97 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~~ 172 (453)
..++||.|+++.-+..+.+.+...+ +.+..++|+....+....+ .+...|+|+|. .....+++..
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~~-----~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~------~~~~Gldi~~ 99 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQN-----FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN------LFGRGMDIER 99 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHTT-----CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS------CCSTTCCGGG
T ss_pred CCcEEEEECCHHHHHHHHHHHHhcC-----CCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC------chhcCcchhh
Confidence 3489999999999999999888753 6788888887765543322 34678999993 1223345677
Q ss_pred ccEEEEec
Q psy9399 173 LQILVLDE 180 (453)
Q Consensus 173 ~~~iIiDE 180 (453)
+++||.-+
T Consensus 100 ~~~Vi~~d 107 (172)
T 1t5i_A 100 VNIAFNYD 107 (172)
T ss_dssp CSEEEESS
T ss_pred CCEEEEEC
Confidence 88887643
No 203
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=87.04 E-value=0.21 Score=45.85 Aligned_cols=51 Identities=16% Similarity=0.137 Sum_probs=29.3
Q ss_pred CCCCCCCCCHHHHHHHHhCC---CCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q psy9399 1 MNFKSIGLHELVLKALVKVG---YTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~~---~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~ 55 (453)
.+|++++=.+.+.+.|...= +..+..++ ......+.+++.||+|+|||..+
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~----~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFT----GKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSC----TTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHh----CCCCCCceEEEECCCCccHHHHH
Confidence 36888877777766665421 00111110 00112256999999999999744
No 204
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=86.61 E-value=2 Score=39.97 Aligned_cols=76 Identities=17% Similarity=0.165 Sum_probs=55.7
Q ss_pred CCCcEEEEeccchhHHHHHHHHhhC-----CCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeC-Cc-----ccCCCCC
Q psy9399 268 RVGQAVVFTATKRDADIIADRLNIS-----GFLAAPLHGDLHQNARNRTLENLRRGRIKILVATD-VA-----ARGIDVP 336 (453)
Q Consensus 268 ~~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~-----~~Gvdi~ 336 (453)
.+.++||.++++.-+..+++.+... +..+..++|+.+..+... .+.++..+|+|+|. .+ ...+++.
T Consensus 75 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~iiv~T~~~l~~~~~~~~~~~~ 151 (391)
T 1xti_A 75 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLK 151 (391)
T ss_dssp TCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCT
T ss_pred CCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHH---HHhcCCCCEEEECHHHHHHHHHcCCcccc
Confidence 3458999999999999888877653 788899999988665443 34557789999993 33 2345677
Q ss_pred CCcEEEEcCC
Q psy9399 337 AITHVFNYDL 346 (453)
Q Consensus 337 ~~~~Vi~~~~ 346 (453)
.+++||....
T Consensus 152 ~~~~vViDEa 161 (391)
T 1xti_A 152 HIKHFILDEC 161 (391)
T ss_dssp TCSEEEECSH
T ss_pred ccCEEEEeCH
Confidence 8888876443
No 205
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=86.42 E-value=1.6 Score=44.95 Aligned_cols=16 Identities=31% Similarity=0.605 Sum_probs=14.3
Q ss_pred CcEEEEcCCCchHHHH
Q psy9399 39 RDLIVSSQTGSGKTAA 54 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~ 54 (453)
+.+++.||+|+|||+.
T Consensus 239 ~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLI 254 (806)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5699999999999984
No 206
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=86.27 E-value=15 Score=32.83 Aligned_cols=19 Identities=26% Similarity=0.191 Sum_probs=14.2
Q ss_pred cEEEEcCCCchHHHHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAFMLP 58 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~l~~ 58 (453)
-+.+.++.|+|||......
T Consensus 100 ~i~i~g~~G~GKTT~~~~l 118 (295)
T 1ls1_A 100 LWFLVGLQGSGKTTTAAKL 118 (295)
T ss_dssp EEEEECCTTTTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4677899999999754333
No 207
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=86.11 E-value=2.6 Score=36.37 Aligned_cols=75 Identities=16% Similarity=0.134 Sum_probs=53.7
Q ss_pred CCCcEEEEeccchhHHHHHHHHhh----CCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeC-Cc----c-cCCCCCC
Q psy9399 268 RVGQAVVFTATKRDADIIADRLNI----SGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATD-VA----A-RGIDVPA 337 (453)
Q Consensus 268 ~~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~----~-~Gvdi~~ 337 (453)
.+.++||.+++++-+..+++.++. .+..+..++|+.+.......+. + ..+|+|+|. .+ . ..+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---R-GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---H-CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---C-CCCEEEECHHHHHHHHHcCCCCccc
Confidence 456799999999998888777764 4788889999988766544443 2 478999994 22 1 2356778
Q ss_pred CcEEEEcCC
Q psy9399 338 ITHVFNYDL 346 (453)
Q Consensus 338 ~~~Vi~~~~ 346 (453)
++++|....
T Consensus 177 ~~~lViDEa 185 (242)
T 3fe2_A 177 TTYLVLDEA 185 (242)
T ss_dssp CCEEEETTH
T ss_pred ccEEEEeCH
Confidence 888776443
No 208
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=85.81 E-value=0.8 Score=43.84 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=18.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhhh
Q psy9399 38 GRDLIVSSQTGSGKTAAFMLPALHKFA 64 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~l~~~~~~l~ 64 (453)
..+++|.|+||+|||... ..++..+.
T Consensus 53 ~~h~~i~G~tGsGKs~~~-~~li~~~~ 78 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL-RELAYTGL 78 (437)
T ss_dssp GGCEEEEECTTSSHHHHH-HHHHHHHH
T ss_pred cceEEEECCCCCCHHHHH-HHHHHHHH
Confidence 357999999999999863 44444443
No 209
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=85.35 E-value=4.2 Score=33.46 Aligned_cols=71 Identities=21% Similarity=0.185 Sum_probs=43.2
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHH----HHhcCCCCEEEeChHHHHHHHhcCCCCCCC
Q psy9399 97 QPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQM----QLLSRNPEILLATPGRLIDHMNSGKINFSH 172 (453)
Q Consensus 97 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~ 172 (453)
+.++||.|+++.-+..+.+.+...+ +.+..++|+....+.. ....+...|+|+|. .+ ...+++..
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~g-----~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-~~-----~~Gldi~~ 114 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHEG-----YACTSIHGDRSQRDREEALHQFRSGKSPILVATA-VA-----ARGLDISN 114 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHTT-----CCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCCS
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcC-----CceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-hh-----hcCCCccc
Confidence 4589999999999999998887753 6777788776543322 22235678999993 22 12235677
Q ss_pred ccEEEE
Q psy9399 173 LQILVL 178 (453)
Q Consensus 173 ~~~iIi 178 (453)
+++||.
T Consensus 115 ~~~VI~ 120 (185)
T 2jgn_A 115 VKHVIN 120 (185)
T ss_dssp BSEEEE
T ss_pred CCEEEE
Confidence 888776
No 210
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=85.20 E-value=0.57 Score=43.37 Aligned_cols=24 Identities=33% Similarity=0.625 Sum_probs=18.7
Q ss_pred HHHHhcCCc--EEEEcCCCchHHHHH
Q psy9399 32 IPAAISGRD--LIVSSQTGSGKTAAF 55 (453)
Q Consensus 32 ~~~~~~~~~--~lv~a~TGsGKT~~~ 55 (453)
+..+++|.+ ++..|+||||||.+.
T Consensus 97 v~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 97 VSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 444567776 788999999999864
No 211
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=85.03 E-value=7.5 Score=33.59 Aligned_cols=74 Identities=14% Similarity=0.111 Sum_probs=50.6
Q ss_pred CCcEEEEeccchhHHHHHHHHhh----CCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeC-Ccc-----cCCCCCCC
Q psy9399 269 VGQAVVFTATKRDADIIADRLNI----SGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATD-VAA-----RGIDVPAI 338 (453)
Q Consensus 269 ~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~~-----~Gvdi~~~ 338 (453)
+.++||.+++++-+..+++.++. .+..+..++|+.+....... + ....+|+|+|. .+. ..+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIRE---V-QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHH---H-SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---h-CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 35899999999999988887765 35667778888765443322 2 34578999994 332 23567778
Q ss_pred cEEEEcCC
Q psy9399 339 THVFNYDL 346 (453)
Q Consensus 339 ~~Vi~~~~ 346 (453)
++||....
T Consensus 176 ~~lViDEa 183 (253)
T 1wrb_A 176 KYIVLDEA 183 (253)
T ss_dssp CEEEEETH
T ss_pred CEEEEeCH
Confidence 88776443
No 212
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=84.74 E-value=1.5 Score=40.64 Aligned_cols=18 Identities=33% Similarity=0.475 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCchHHHHH
Q psy9399 38 GRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~ 55 (453)
..++++.||+|+|||.++
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 457999999999999844
No 213
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=84.68 E-value=9.4 Score=37.60 Aligned_cols=77 Identities=12% Similarity=0.230 Sum_probs=55.7
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHh----cCCCCEEEeChHHHHHHHhcCCCCCC
Q psy9399 96 AQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLL----SRNPEILLATPGRLIDHMNSGKINFS 171 (453)
Q Consensus 96 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~ 171 (453)
.+.++||.|+++.-+..+++.+..... ..+.+..++|+.........+ .+..+|+|+|. .....+++.
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~--~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~------~~~~GiDip 409 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFK--KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD------VGARGMDFP 409 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHT--TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG------GGTSSCCCT
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhcc--CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc------hhhcCCCcc
Confidence 356899999999999999998887632 236788888887765543332 35678999994 333445778
Q ss_pred CccEEEEec
Q psy9399 172 HLQILVLDE 180 (453)
Q Consensus 172 ~~~~iIiDE 180 (453)
.+++||.-.
T Consensus 410 ~v~~VI~~~ 418 (563)
T 3i5x_A 410 NVHEVLQIG 418 (563)
T ss_dssp TCCEEEEES
T ss_pred cCCEEEEEC
Confidence 888888654
No 214
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=84.66 E-value=0.61 Score=40.54 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=18.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhh
Q psy9399 39 RDLIVSSQTGSGKTAAFMLPALHKF 63 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~~~~~~l 63 (453)
.-+++.|++|+|||...+-.+.+.+
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~ 55 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4599999999999976555554433
No 215
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=84.37 E-value=7.7 Score=36.94 Aligned_cols=76 Identities=18% Similarity=0.239 Sum_probs=55.3
Q ss_pred CCCCcEEEEeccchhHHHHHHHHhhC-CC---ceeecCCCCCHHHHHHHHHHHhcCCccEEEEe-CCccc-----CCCCC
Q psy9399 267 KRVGQAVVFTATKRDADIIADRLNIS-GF---LAAPLHGDLHQNARNRTLENLRRGRIKILVAT-DVAAR-----GIDVP 336 (453)
Q Consensus 267 ~~~~~~lvf~~~~~~~~~l~~~L~~~-~~---~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T-~~~~~-----Gvdi~ 336 (453)
..+.++||.|+++.-+...++.+.+. +. .+..+||+....++..... ..+|+|+| +.+.. .++..
T Consensus 50 ~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~ 124 (494)
T 1wp9_A 50 KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLE 124 (494)
T ss_dssp HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTT
T ss_pred cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchh
Confidence 35679999999999998888888764 44 7899999998876654432 35899999 43332 35566
Q ss_pred CCcEEEEcCCC
Q psy9399 337 AITHVFNYDLP 347 (453)
Q Consensus 337 ~~~~Vi~~~~~ 347 (453)
.+++||.....
T Consensus 125 ~~~~vIiDEaH 135 (494)
T 1wp9_A 125 DVSLIVFDEAH 135 (494)
T ss_dssp SCSEEEEETGG
T ss_pred hceEEEEECCc
Confidence 78888765543
No 216
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=84.16 E-value=0.74 Score=41.99 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=18.6
Q ss_pred HHHHhcCCc--EEEEcCCCchHHHHH
Q psy9399 32 IPAAISGRD--LIVSSQTGSGKTAAF 55 (453)
Q Consensus 32 ~~~~~~~~~--~lv~a~TGsGKT~~~ 55 (453)
+..+++|.+ ++..|+||||||.+.
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 70 VKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCeEEEEEECCCCCCCceEe
Confidence 334567776 788999999999864
No 217
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=83.95 E-value=2 Score=37.03 Aligned_cols=76 Identities=18% Similarity=0.156 Sum_probs=46.0
Q ss_pred CCCcEEEEeccchhHHHHHHHHhhC----CCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeC-----Cccc-CCCCCC
Q psy9399 268 RVGQAVVFTATKRDADIIADRLNIS----GFLAAPLHGDLHQNARNRTLENLRRGRIKILVATD-----VAAR-GIDVPA 337 (453)
Q Consensus 268 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~-Gvdi~~ 337 (453)
.+.++||.++++.-+..+++.++.. +..+..++|+.... ...+.+..+..+|+|+|. .+.. .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVR---NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchH---HHHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 4568999999999999988888753 45677777775433 233455567789999993 2222 356667
Q ss_pred CcEEEEcCC
Q psy9399 338 ITHVFNYDL 346 (453)
Q Consensus 338 ~~~Vi~~~~ 346 (453)
+++||....
T Consensus 174 ~~~lViDEa 182 (237)
T 3bor_A 174 IKMFVLDEA 182 (237)
T ss_dssp CCEEEEESH
T ss_pred CcEEEECCc
Confidence 788776443
No 218
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=83.93 E-value=0.82 Score=40.28 Aligned_cols=18 Identities=17% Similarity=0.438 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCchHHHH
Q psy9399 37 SGRDLIVSSQTGSGKTAA 54 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~ 54 (453)
.+.++++.||+|+|||..
T Consensus 28 ~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELI 45 (265)
T ss_dssp SCSCEEEECCTTSCHHHH
T ss_pred CCCCEEEECCCCCcHHHH
Confidence 456799999999999974
No 219
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=83.92 E-value=0.8 Score=41.91 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=19.5
Q ss_pred HHHHHhcCCcEEEEcCCCchHHHHH
Q psy9399 31 AIPAAISGRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 31 ~~~~~~~~~~~lv~a~TGsGKT~~~ 55 (453)
+...+..++++++.||+|+|||..+
T Consensus 39 l~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 39 LLIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHHcCCeEEEECCCCCcHHHHH
Confidence 3444556788999999999999743
No 220
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=83.60 E-value=1.5 Score=42.62 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=20.9
Q ss_pred HHHHHHHhcCCcEEEEcCCCchHHHH
Q psy9399 29 EQAIPAAISGRDLIVSSQTGSGKTAA 54 (453)
Q Consensus 29 ~~~~~~~~~~~~~lv~a~TGsGKT~~ 54 (453)
..+..++..+.++++.||+|+|||..
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHH
Confidence 44555566788999999999999973
No 221
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=83.54 E-value=0.76 Score=43.25 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=18.5
Q ss_pred HHHhcCCc--EEEEcCCCchHHHHHH
Q psy9399 33 PAAISGRD--LIVSSQTGSGKTAAFM 56 (453)
Q Consensus 33 ~~~~~~~~--~lv~a~TGsGKT~~~l 56 (453)
..+++|.+ ++..|+||||||.+..
T Consensus 148 ~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 148 QTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHHhcCCceeEEeecCCCCCCCeEee
Confidence 34567776 7789999999998753
No 222
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=83.42 E-value=0.74 Score=42.32 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=17.9
Q ss_pred HHHhcCCc--EEEEcCCCchHHHHH
Q psy9399 33 PAAISGRD--LIVSSQTGSGKTAAF 55 (453)
Q Consensus 33 ~~~~~~~~--~lv~a~TGsGKT~~~ 55 (453)
..+++|.+ ++..|+||||||.+.
T Consensus 88 ~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 88 DKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hHhhCCCceEEEEecCCCCCCCeEE
Confidence 33457766 788999999999864
No 223
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=83.29 E-value=2.1 Score=36.54 Aligned_cols=75 Identities=16% Similarity=0.214 Sum_probs=48.7
Q ss_pred CCCcEEEEeccchhHHHHHHHHhh---CCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeC-Cc-----ccCCCCCCC
Q psy9399 268 RVGQAVVFTATKRDADIIADRLNI---SGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATD-VA-----ARGIDVPAI 338 (453)
Q Consensus 268 ~~~~~lvf~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~-----~~Gvdi~~~ 338 (453)
.+.++||.+++++-+..+++.++. .+..+..++|+.+...+.. .+.+ ..+|+|+|. .+ ...+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIE---DISK-GVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHH---HHHS-CCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHH---HhcC-CCCEEEECHHHHHHHHHcCCcCcccc
Confidence 456899999999999999988876 3677888888866544332 2333 478999993 22 224567778
Q ss_pred cEEEEcCC
Q psy9399 339 THVFNYDL 346 (453)
Q Consensus 339 ~~Vi~~~~ 346 (453)
++||....
T Consensus 169 ~~lViDEa 176 (228)
T 3iuy_A 169 TYLVIDEA 176 (228)
T ss_dssp CEEEECCH
T ss_pred eEEEEECH
Confidence 88776443
No 224
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=83.27 E-value=0.82 Score=42.13 Aligned_cols=25 Identities=32% Similarity=0.624 Sum_probs=19.0
Q ss_pred HHHHhcCCc--EEEEcCCCchHHHHHH
Q psy9399 32 IPAAISGRD--LIVSSQTGSGKTAAFM 56 (453)
Q Consensus 32 ~~~~~~~~~--~lv~a~TGsGKT~~~l 56 (453)
+..+++|.+ ++..|+||||||.+..
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 77 VQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHhcCCceeEEEEECCCCCCCcEecc
Confidence 344567776 7789999999998753
No 225
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=83.23 E-value=0.83 Score=42.15 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=19.5
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHH
Q psy9399 31 AIPAAISGRD--LIVSSQTGSGKTAAF 55 (453)
Q Consensus 31 ~~~~~~~~~~--~lv~a~TGsGKT~~~ 55 (453)
++..+++|.+ ++..|+||||||.+.
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 4455667776 777999999999875
No 226
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=83.21 E-value=2.8 Score=37.55 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCchHHHHH
Q psy9399 38 GRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~ 55 (453)
..++++.||+|+|||..+
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999754
No 227
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=83.19 E-value=0.85 Score=42.03 Aligned_cols=32 Identities=28% Similarity=0.387 Sum_probs=22.8
Q ss_pred CcHHHHHHHH--------HHhcCCc--EEEEcCCCchHHHHH
Q psy9399 24 PTGVQEQAIP--------AAISGRD--LIVSSQTGSGKTAAF 55 (453)
Q Consensus 24 ~~~~Q~~~~~--------~~~~~~~--~lv~a~TGsGKT~~~ 55 (453)
+..-|++++. .+++|.+ ++..|+||||||.+.
T Consensus 66 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 66 QTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp TTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 3445665554 3557766 788999999999864
No 228
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=83.06 E-value=12 Score=37.03 Aligned_cols=78 Identities=12% Similarity=0.228 Sum_probs=56.2
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHh----cCCCCEEEeChHHHHHHHhcCCCCCC
Q psy9399 96 AQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLL----SRNPEILLATPGRLIDHMNSGKINFS 171 (453)
Q Consensus 96 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~ 171 (453)
.+.++||.|+++.-+..+++.+..... ..+.+..++|+....+....+ .+..+|+|+|. .....+++.
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~--~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~------~~~~GiDip 358 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFK--KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD------VGARGMDFP 358 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHT--TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG------GGTSSCCCT
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhc--CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc------hhhcCCCcc
Confidence 356899999999999999999887632 236788888887765543332 35678999994 333445778
Q ss_pred CccEEEEech
Q psy9399 172 HLQILVLDEA 181 (453)
Q Consensus 172 ~~~~iIiDE~ 181 (453)
.+++||.-..
T Consensus 359 ~v~~VI~~~~ 368 (579)
T 3sqw_A 359 NVHEVLQIGV 368 (579)
T ss_dssp TCCEEEEESC
T ss_pred cCCEEEEcCC
Confidence 8988886554
No 229
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=83.03 E-value=1.6 Score=42.69 Aligned_cols=38 Identities=24% Similarity=0.108 Sum_probs=24.9
Q ss_pred HHHHhCCCCCCcHHHHHHHHH-HhcCCcEEEEcCCCchHHH
Q psy9399 14 KALVKVGYTKPTGVQEQAIPA-AISGRDLIVSSQTGSGKTA 53 (453)
Q Consensus 14 ~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~lv~a~TGsGKT~ 53 (453)
..|.++|. +++.+...+.. +..+..+++.||||||||.
T Consensus 237 ~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTT 275 (511)
T 2oap_1 237 IDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTT 275 (511)
T ss_dssp HHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHH
T ss_pred hhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHH
Confidence 34555553 33444444433 4567789999999999997
No 230
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=82.98 E-value=0.83 Score=43.07 Aligned_cols=26 Identities=31% Similarity=0.585 Sum_probs=20.1
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHHH
Q psy9399 31 AIPAAISGRD--LIVSSQTGSGKTAAFM 56 (453)
Q Consensus 31 ~~~~~~~~~~--~lv~a~TGsGKT~~~l 56 (453)
++..+++|.+ ++..|+||||||.+..
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 4455667876 7789999999998753
No 231
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=82.94 E-value=0.89 Score=41.56 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=19.6
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHH
Q psy9399 31 AIPAAISGRD--LIVSSQTGSGKTAAF 55 (453)
Q Consensus 31 ~~~~~~~~~~--~lv~a~TGsGKT~~~ 55 (453)
++..+++|.+ ++..|+||||||.+.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 4455667876 778999999999864
No 232
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=82.93 E-value=0.88 Score=42.22 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=18.0
Q ss_pred HHHhcCCc--EEEEcCCCchHHHHH
Q psy9399 33 PAAISGRD--LIVSSQTGSGKTAAF 55 (453)
Q Consensus 33 ~~~~~~~~--~lv~a~TGsGKT~~~ 55 (453)
..++.|.+ ++..|+||||||.+.
T Consensus 78 ~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 78 TDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCceEEEeecCCCCCCceEE
Confidence 34557766 778999999999864
No 233
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=82.93 E-value=0.89 Score=42.03 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=18.1
Q ss_pred HHHhcCCc--EEEEcCCCchHHHHH
Q psy9399 33 PAAISGRD--LIVSSQTGSGKTAAF 55 (453)
Q Consensus 33 ~~~~~~~~--~lv~a~TGsGKT~~~ 55 (453)
..+++|.+ ++..|+||||||.+.
T Consensus 99 ~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 99 RSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHhCCCceEEEEeCCCCCCceeee
Confidence 34557776 788999999999864
No 234
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=82.91 E-value=2.2 Score=36.65 Aligned_cols=74 Identities=15% Similarity=0.118 Sum_probs=49.5
Q ss_pred CCCcEEEEeccchhHHHHHHHHhhC----CCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeC-Ccc----c--CCCCC
Q psy9399 268 RVGQAVVFTATKRDADIIADRLNIS----GFLAAPLHGDLHQNARNRTLENLRRGRIKILVATD-VAA----R--GIDVP 336 (453)
Q Consensus 268 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~~----~--Gvdi~ 336 (453)
.+.++||.++++.-+...++.++.. +..+..++|+.+.......+ +..+|+|+|. .+. . .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 4568999999999999888888753 46788889887654433322 3578999993 221 1 35566
Q ss_pred CCcEEEEcCC
Q psy9399 337 AITHVFNYDL 346 (453)
Q Consensus 337 ~~~~Vi~~~~ 346 (453)
++++||....
T Consensus 171 ~~~~lViDEa 180 (236)
T 2pl3_A 171 DLQMLVLDEA 180 (236)
T ss_dssp TCCEEEETTH
T ss_pred cccEEEEeCh
Confidence 7777775443
No 235
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=82.86 E-value=0.89 Score=42.03 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=17.7
Q ss_pred HHhcCCc--EEEEcCCCchHHHHH
Q psy9399 34 AAISGRD--LIVSSQTGSGKTAAF 55 (453)
Q Consensus 34 ~~~~~~~--~lv~a~TGsGKT~~~ 55 (453)
.+++|.+ ++..|+||||||.+.
T Consensus 75 ~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 75 DILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCCcceEEEECCCCCCcceEe
Confidence 4557766 778999999999864
No 236
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=82.85 E-value=2.8 Score=38.03 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=18.7
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHh
Q psy9399 37 SGRDLIVSSQTGSGKTAAFMLPALHK 62 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~~l~~~~~~ 62 (453)
.|.-++|.|++|+|||..++..+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34559999999999997554444443
No 237
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=82.59 E-value=0.85 Score=42.37 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=17.6
Q ss_pred HHhcCCc--EEEEcCCCchHHHHH
Q psy9399 34 AAISGRD--LIVSSQTGSGKTAAF 55 (453)
Q Consensus 34 ~~~~~~~--~lv~a~TGsGKT~~~ 55 (453)
.+++|.+ ++..|+||||||.+.
T Consensus 96 ~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 96 SVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHhCCCeeeEEeecCCCCCCCEeE
Confidence 3557766 778999999999864
No 238
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=82.54 E-value=0.93 Score=41.73 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=18.0
Q ss_pred HHHhcCCc--EEEEcCCCchHHHHH
Q psy9399 33 PAAISGRD--LIVSSQTGSGKTAAF 55 (453)
Q Consensus 33 ~~~~~~~~--~lv~a~TGsGKT~~~ 55 (453)
..+++|.+ ++..|+||||||.+.
T Consensus 77 ~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 77 EAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCeeEEEecccCCCceEee
Confidence 34557766 778999999999864
No 239
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=82.51 E-value=0.93 Score=42.11 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=18.4
Q ss_pred HHHHhcCCc--EEEEcCCCchHHHHH
Q psy9399 32 IPAAISGRD--LIVSSQTGSGKTAAF 55 (453)
Q Consensus 32 ~~~~~~~~~--~lv~a~TGsGKT~~~ 55 (453)
+..+++|.+ ++..|+||||||.+.
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 334567776 778999999999764
No 240
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=82.50 E-value=0.89 Score=38.70 Aligned_cols=74 Identities=20% Similarity=0.115 Sum_probs=48.4
Q ss_pred CCCcEEEEeccchhHHHHHHHHhhC--------CCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeC-Cc----cc-CC
Q psy9399 268 RVGQAVVFTATKRDADIIADRLNIS--------GFLAAPLHGDLHQNARNRTLENLRRGRIKILVATD-VA----AR-GI 333 (453)
Q Consensus 268 ~~~~~lvf~~~~~~~~~l~~~L~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~----~~-Gv 333 (453)
.+.+++|.++++.-+..+++.++.. +..+..++|+.+..+.. +.+ .+..+|+|+|. .+ .. .+
T Consensus 71 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~Iiv~Tp~~l~~~l~~~~~ 146 (219)
T 1q0u_A 71 AEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKL-NVQPHIVIGTPGRINDFIREQAL 146 (219)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCC-SSCCSEEEECHHHHHHHHHTTCC
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHc-CCCCCEEEeCHHHHHHHHHcCCC
Confidence 4568999999999998888877642 56777888886543221 111 23568999993 22 22 34
Q ss_pred CCCCCcEEEEcC
Q psy9399 334 DVPAITHVFNYD 345 (453)
Q Consensus 334 di~~~~~Vi~~~ 345 (453)
++..+++||...
T Consensus 147 ~~~~~~~lViDE 158 (219)
T 1q0u_A 147 DVHTAHILVVDE 158 (219)
T ss_dssp CGGGCCEEEECS
T ss_pred CcCcceEEEEcC
Confidence 566777777544
No 241
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=82.48 E-value=0.88 Score=42.04 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=18.8
Q ss_pred HHHHhcCCc--EEEEcCCCchHHHHH
Q psy9399 32 IPAAISGRD--LIVSSQTGSGKTAAF 55 (453)
Q Consensus 32 ~~~~~~~~~--~lv~a~TGsGKT~~~ 55 (453)
+..+++|.+ ++..|+||||||.+.
T Consensus 85 v~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 85 LQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHhCCceeEEEeeCCCCCCCceEE
Confidence 444567876 778999999999864
No 242
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=82.41 E-value=0.88 Score=41.94 Aligned_cols=24 Identities=42% Similarity=0.565 Sum_probs=18.4
Q ss_pred HHHHhcCCc--EEEEcCCCchHHHHH
Q psy9399 32 IPAAISGRD--LIVSSQTGSGKTAAF 55 (453)
Q Consensus 32 ~~~~~~~~~--~lv~a~TGsGKT~~~ 55 (453)
+..+++|.+ ++..|+||||||.+.
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 70 IDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHcCCccceeeecCCCCCCCeEE
Confidence 334557766 778999999999864
No 243
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=82.29 E-value=0.87 Score=42.16 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=18.5
Q ss_pred HHHHhcCCc--EEEEcCCCchHHHHH
Q psy9399 32 IPAAISGRD--LIVSSQTGSGKTAAF 55 (453)
Q Consensus 32 ~~~~~~~~~--~lv~a~TGsGKT~~~ 55 (453)
+..++.|.+ ++..|+||||||.+.
T Consensus 81 v~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 81 LDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCCceEE
Confidence 334557776 788999999999864
No 244
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=82.26 E-value=1.5 Score=41.29 Aligned_cols=21 Identities=14% Similarity=0.362 Sum_probs=16.7
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q psy9399 37 SGRDLIVSSQTGSGKTAAFML 57 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~~l~ 57 (453)
.+.+++|.|+||+|||...-.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~ 54 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM 54 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHH
Confidence 456799999999999975433
No 245
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=82.20 E-value=0.9 Score=42.01 Aligned_cols=24 Identities=33% Similarity=0.625 Sum_probs=18.3
Q ss_pred HHHHhcCCc--EEEEcCCCchHHHHH
Q psy9399 32 IPAAISGRD--LIVSSQTGSGKTAAF 55 (453)
Q Consensus 32 ~~~~~~~~~--~lv~a~TGsGKT~~~ 55 (453)
+..+++|.+ ++..|+||||||.+.
T Consensus 96 v~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 96 VSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCceEEEEECCCCCCCceEe
Confidence 344557776 777999999999864
No 246
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=82.18 E-value=2.9 Score=39.93 Aligned_cols=69 Identities=13% Similarity=0.151 Sum_probs=46.3
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEE
Q psy9399 97 QPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176 (453)
Q Consensus 97 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~i 176 (453)
+.+++|+||++.-+..+++.+...+ +.+..++|............+..+|+|+|. .....+++. +++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~~-----~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~------v~e~GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKAG-----KSVVVLNRKTFEREYPTIKQKKPDFILATD------IAEMGANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTT-----CCEEECCSSSCC--------CCCSEEEESS------STTCCTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcC-----CCEEEecchhHHHHHhhhcCCCceEEEECC------hhheeeccC-ceEE
Confidence 5689999999999999999888753 678888886554443444445779999993 222334567 7777
Q ss_pred E
Q psy9399 177 V 177 (453)
Q Consensus 177 I 177 (453)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 6
No 247
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=82.18 E-value=0.73 Score=38.58 Aligned_cols=20 Identities=20% Similarity=0.529 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q psy9399 38 GRDLIVSSQTGSGKTAAFML 57 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~l~ 57 (453)
++.+++.||||+|||..++.
T Consensus 34 g~~ilI~GpsGsGKStLA~~ 53 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALE 53 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 34589999999999975433
No 248
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=82.14 E-value=0.88 Score=37.43 Aligned_cols=18 Identities=17% Similarity=0.374 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCchHHHH
Q psy9399 37 SGRDLIVSSQTGSGKTAA 54 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~ 54 (453)
.++-+++.||+|+|||..
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456689999999999974
No 249
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=82.11 E-value=0.97 Score=42.18 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=18.6
Q ss_pred HHHhcCCc--EEEEcCCCchHHHHHH
Q psy9399 33 PAAISGRD--LIVSSQTGSGKTAAFM 56 (453)
Q Consensus 33 ~~~~~~~~--~lv~a~TGsGKT~~~l 56 (453)
..+++|.+ ++..|+||||||.+..
T Consensus 128 ~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 128 QTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred HHHhcCCceEEEEecCCCCCCCeEec
Confidence 34567776 7889999999998753
No 250
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=81.94 E-value=4.4 Score=33.72 Aligned_cols=75 Identities=20% Similarity=0.161 Sum_probs=52.1
Q ss_pred CCCcEEEEeccchhHHHHHHHHhhC--CCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeC-Cc----c-cCCCCCCCc
Q psy9399 268 RVGQAVVFTATKRDADIIADRLNIS--GFLAAPLHGDLHQNARNRTLENLRRGRIKILVATD-VA----A-RGIDVPAIT 339 (453)
Q Consensus 268 ~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~----~-~Gvdi~~~~ 339 (453)
.+.+++|.++++.-+..+++.++.. +..+..++|+.+.......+. ...+|+|+|. .+ . ..+++.+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 4568999999999999999998864 467788888876544333322 2468999994 22 1 245667788
Q ss_pred EEEEcCC
Q psy9399 340 HVFNYDL 346 (453)
Q Consensus 340 ~Vi~~~~ 346 (453)
+||....
T Consensus 147 ~iViDEa 153 (207)
T 2gxq_A 147 VAVLDEA 153 (207)
T ss_dssp EEEEESH
T ss_pred EEEEECh
Confidence 8776443
No 251
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=81.76 E-value=0.77 Score=41.99 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=15.1
Q ss_pred cEEEEcCCCchHHHHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAFMLP 58 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~l~~ 58 (453)
-++|.||||+|||......
T Consensus 42 lIvI~GPTgsGKTtLa~~L 60 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDL 60 (339)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5899999999999754433
No 252
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=81.72 E-value=0.73 Score=40.67 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=16.2
Q ss_pred HhcCCcEEEEcCCCchHHHH
Q psy9399 35 AISGRDLIVSSQTGSGKTAA 54 (453)
Q Consensus 35 ~~~~~~~lv~a~TGsGKT~~ 54 (453)
+..+.-+.+.||||||||..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 44556699999999999973
No 253
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=81.44 E-value=0.96 Score=42.11 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=17.5
Q ss_pred HHhcCCc--EEEEcCCCchHHHHH
Q psy9399 34 AAISGRD--LIVSSQTGSGKTAAF 55 (453)
Q Consensus 34 ~~~~~~~--~lv~a~TGsGKT~~~ 55 (453)
.+++|.+ ++..|+||||||.+.
T Consensus 95 ~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 95 EVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCceEEEEeecCCCCCcceec
Confidence 3557766 788999999999864
No 254
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=81.21 E-value=2.8 Score=36.82 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=28.9
Q ss_pred HHHHHHHHhCCCCCCcHHHH-HHHHHHhcCC-----cEEEEcCCCchHHHHHH
Q psy9399 10 ELVLKALVKVGYTKPTGVQE-QAIPAAISGR-----DLIVSSQTGSGKTAAFM 56 (453)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~Q~-~~~~~~~~~~-----~~lv~a~TGsGKT~~~l 56 (453)
.++...|+-.|+. +.+. .++..+++++ .+++.||+|+|||+.+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 4567777767764 3343 2344455443 39999999999998554
No 255
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=81.14 E-value=0.91 Score=42.15 Aligned_cols=25 Identities=36% Similarity=0.585 Sum_probs=19.3
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHH
Q psy9399 31 AIPAAISGRD--LIVSSQTGSGKTAAF 55 (453)
Q Consensus 31 ~~~~~~~~~~--~lv~a~TGsGKT~~~ 55 (453)
++..++.|.+ ++..|+||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 3445667876 777999999999864
No 256
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=81.01 E-value=0.87 Score=41.16 Aligned_cols=19 Identities=21% Similarity=0.232 Sum_probs=14.8
Q ss_pred cEEEEcCCCchHHHHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAFMLP 58 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~l~~ 58 (453)
-++|.||||+|||..+...
T Consensus 5 ~i~i~GptgsGKt~la~~L 23 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVML 23 (322)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHH
Confidence 4788999999999754433
No 257
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=80.98 E-value=1 Score=42.55 Aligned_cols=25 Identities=40% Similarity=0.602 Sum_probs=19.8
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHH
Q psy9399 31 AIPAAISGRD--LIVSSQTGSGKTAAF 55 (453)
Q Consensus 31 ~~~~~~~~~~--~lv~a~TGsGKT~~~ 55 (453)
++..++.|.+ ++..|+||||||.+.
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 4555667876 778999999999864
No 258
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=80.90 E-value=0.99 Score=40.70 Aligned_cols=18 Identities=33% Similarity=0.338 Sum_probs=14.5
Q ss_pred EEEEcCCCchHHHHHHHH
Q psy9399 41 LIVSSQTGSGKTAAFMLP 58 (453)
Q Consensus 41 ~lv~a~TGsGKT~~~l~~ 58 (453)
++|+||||+|||..+...
T Consensus 13 i~i~GptgsGKt~la~~L 30 (316)
T 3foz_A 13 IFLMGPTASGKTALAIEL 30 (316)
T ss_dssp EEEECCTTSCHHHHHHHH
T ss_pred EEEECCCccCHHHHHHHH
Confidence 788999999999754433
No 259
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=80.65 E-value=6.6 Score=36.79 Aligned_cols=72 Identities=21% Similarity=0.186 Sum_probs=52.8
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHh----cCCCCEEEeChHHHHHHHhcCCCCCC
Q psy9399 96 AQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLL----SRNPEILLATPGRLIDHMNSGKINFS 171 (453)
Q Consensus 96 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~ 171 (453)
.+.++||.|+++..+..+.+.+.+.+ +.+..++|+....+..... .+..+|+|+|. .+. ..+++.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~-----~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~-~Gidip 343 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHEG-----YACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA-RGLDIS 343 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTT-----CCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHH-TTSCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCC-----CCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh-cCCCcc
Confidence 56689999999999999998888753 7788888887765443322 34678999994 222 334677
Q ss_pred CccEEEE
Q psy9399 172 HLQILVL 178 (453)
Q Consensus 172 ~~~~iIi 178 (453)
.+++||.
T Consensus 344 ~v~~Vi~ 350 (417)
T 2i4i_A 344 NVKHVIN 350 (417)
T ss_dssp CEEEEEE
T ss_pred cCCEEEE
Confidence 8888775
No 260
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=80.63 E-value=1.2 Score=42.58 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=18.1
Q ss_pred HHHhcCCc--EEEEcCCCchHHHHH
Q psy9399 33 PAAISGRD--LIVSSQTGSGKTAAF 55 (453)
Q Consensus 33 ~~~~~~~~--~lv~a~TGsGKT~~~ 55 (453)
..++.|.+ ++..|+||||||.+.
T Consensus 130 ~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 130 DHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHhhcCCceEEEEeCCCCCCCCEEe
Confidence 33457776 788999999999865
No 261
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=80.61 E-value=4.3 Score=36.48 Aligned_cols=71 Identities=18% Similarity=0.309 Sum_probs=51.9
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHh----cCCCCEEEeChHHHHHHHhcCCCCCCC
Q psy9399 97 QPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLL----SRNPEILLATPGRLIDHMNSGKINFSH 172 (453)
Q Consensus 97 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~~ 172 (453)
+.++||.|+++.-+..+.+.+...+ +.+..++|+.........+ .+..+|+|+|. .....+++..
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~g-----~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~------va~~Gidi~~ 96 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRLG-----HPAQALHGDMSQGERERVMGAFRQGEVRVLVATD------VAARGLDIPQ 96 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTTT-----CCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS------TTTCSTTCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCC-----CCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec------hhhcCccccc
Confidence 4589999999999999888877643 7788899987765544332 34678999993 2333456788
Q ss_pred ccEEEE
Q psy9399 173 LQILVL 178 (453)
Q Consensus 173 ~~~iIi 178 (453)
+++||.
T Consensus 97 v~~VI~ 102 (300)
T 3i32_A 97 VDLVVH 102 (300)
T ss_dssp CSEEEE
T ss_pred eeEEEE
Confidence 888885
No 262
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=80.51 E-value=0.53 Score=41.25 Aligned_cols=50 Identities=16% Similarity=0.132 Sum_probs=28.9
Q ss_pred CCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHh--cCCcEEEEcCCCchHHHH
Q psy9399 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAI--SGRDLIVSSQTGSGKTAA 54 (453)
Q Consensus 2 ~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~--~~~~~lv~a~TGsGKT~~ 54 (453)
+|++++-.+.....+...-.. + ....++..+- -.+.+++.||+|+|||..
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~-~--~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEF-L--KNPSRFHEMGARIPKGVLLVGPPGVGKTHL 65 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHH-H--HCHHHHHHTTCCCCSEEEEECCTTSSHHHH
T ss_pred CHHHhCCcHHHHHHHHHHHHH-H--HCHHHHHHcCCCCCCeEEEECCCCCCHHHH
Confidence 577776666666666543211 0 0112333221 123499999999999974
No 263
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=80.43 E-value=0.96 Score=42.23 Aligned_cols=32 Identities=22% Similarity=0.452 Sum_probs=23.6
Q ss_pred CcHHHHHHHHH--------HhcCCc--EEEEcCCCchHHHHH
Q psy9399 24 PTGVQEQAIPA--------AISGRD--LIVSSQTGSGKTAAF 55 (453)
Q Consensus 24 ~~~~Q~~~~~~--------~~~~~~--~lv~a~TGsGKT~~~ 55 (453)
+..-|++++.. +++|.+ ++..|+||||||.+.
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 34567776653 457766 778999999999864
No 264
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=80.32 E-value=2.1 Score=39.09 Aligned_cols=23 Identities=22% Similarity=0.115 Sum_probs=17.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAFMLPALH 61 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~~~~~ 61 (453)
.-+++.||+|+|||...+..+..
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHhHHHHHHHHH
Confidence 45899999999999865554443
No 265
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=80.29 E-value=1.1 Score=41.77 Aligned_cols=19 Identities=42% Similarity=0.594 Sum_probs=16.7
Q ss_pred HhcCCcEEEEcCCCchHHH
Q psy9399 35 AISGRDLIVSSQTGSGKTA 53 (453)
Q Consensus 35 ~~~~~~~lv~a~TGsGKT~ 53 (453)
+..|..+++.||||||||.
T Consensus 172 i~~G~~i~ivG~sGsGKST 190 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTT 190 (361)
T ss_dssp HHTTCCEEEEESSSSCHHH
T ss_pred HhcCCEEEEECCCCCCHHH
Confidence 4477889999999999997
No 266
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=80.09 E-value=2 Score=36.79 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=19.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhhh
Q psy9399 40 DLIVSSQTGSGKTAAFMLPALHKFA 64 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~l~~~~~~l~ 64 (453)
++++.++.|+|||..++-.+.....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~ 32 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLR 32 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4899999999999876666555443
No 267
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=80.08 E-value=1.1 Score=37.78 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCchHHHHH
Q psy9399 37 SGRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~~ 55 (453)
.+.-+++.||+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 3455899999999999743
No 268
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=80.02 E-value=1.2 Score=37.38 Aligned_cols=19 Identities=21% Similarity=0.259 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCchHHHHH
Q psy9399 37 SGRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~~ 55 (453)
.++.+++.|++|||||...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4567999999999999854
No 269
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=79.97 E-value=4.5 Score=48.22 Aligned_cols=48 Identities=8% Similarity=0.104 Sum_probs=32.9
Q ss_pred HHHHHHHHhCCCCCCcHHHH-HHH---HHHhcCCcEEEEcCCCchHHHHHHHH
Q psy9399 10 ELVLKALVKVGYTKPTGVQE-QAI---PAAISGRDLIVSSQTGSGKTAAFMLP 58 (453)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~Q~-~~~---~~~~~~~~~lv~a~TGsGKT~~~l~~ 58 (453)
+.+.+.+.+.|+. +.+.+. +++ ..+...+.+++.||||+|||.++-..
T Consensus 875 ~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L 926 (3245)
T 3vkg_A 875 KKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVY 926 (3245)
T ss_dssp HHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHH
T ss_pred HHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHH
Confidence 4466677788995 665554 333 33445566999999999999876433
No 270
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=79.91 E-value=0.82 Score=43.89 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=14.9
Q ss_pred CcEEEEcCCCchHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~ 55 (453)
+.+++.||+|+|||..+
T Consensus 168 ~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLA 184 (444)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 56999999999999744
No 271
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=79.77 E-value=3 Score=44.81 Aligned_cols=77 Identities=19% Similarity=0.301 Sum_probs=58.4
Q ss_pred CCCcEEEEeccchhHHHHHHHHhh----CCC----ceeecCCCCCHHHHHHHHHHHhcCCccEEEEeC-CcccCCC-CCC
Q psy9399 268 RVGQAVVFTATKRDADIIADRLNI----SGF----LAAPLHGDLHQNARNRTLENLRRGRIKILVATD-VAARGID-VPA 337 (453)
Q Consensus 268 ~~~~~lvf~~~~~~~~~l~~~L~~----~~~----~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~~~Gvd-i~~ 337 (453)
.+.++||.++++.-+..+++.++. .++ .+..++|+.+..++....+.+.+ .+|+|+|. .+..-+. +..
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 457899999999999988888864 355 78999999998888777777777 89999994 3333222 557
Q ss_pred CcEEEEcCC
Q psy9399 338 ITHVFNYDL 346 (453)
Q Consensus 338 ~~~Vi~~~~ 346 (453)
+++||....
T Consensus 176 l~~lViDEa 184 (1054)
T 1gku_B 176 FDFIFVDDV 184 (1054)
T ss_dssp CSEEEESCH
T ss_pred CCEEEEeCh
Confidence 778776443
No 272
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=79.77 E-value=1.1 Score=41.66 Aligned_cols=32 Identities=34% Similarity=0.530 Sum_probs=22.3
Q ss_pred CcHHHHHHHH-------HHhcCCc--EEEEcCCCchHHHHH
Q psy9399 24 PTGVQEQAIP-------AAISGRD--LIVSSQTGSGKTAAF 55 (453)
Q Consensus 24 ~~~~Q~~~~~-------~~~~~~~--~lv~a~TGsGKT~~~ 55 (453)
+..-|++++. .+++|.+ ++..|+||||||.+.
T Consensus 93 ~~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 93 PGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp TTCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred CcccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 3445555543 4557766 778999999999864
No 273
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=79.61 E-value=1.3 Score=40.03 Aligned_cols=18 Identities=22% Similarity=0.532 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCchHHHH
Q psy9399 37 SGRDLIVSSQTGSGKTAA 54 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~ 54 (453)
...++++.||+|+|||..
T Consensus 24 ~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELV 41 (304)
T ss_dssp TTSCEEEESCTTSCHHHH
T ss_pred CCCcEEEECCCCchHHHH
Confidence 346799999999999974
No 274
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=79.52 E-value=1 Score=37.95 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=15.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAFMLPALH 61 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~l~~~~~ 61 (453)
.+++.||+|+|||..+ ..+..
T Consensus 60 ~ili~GPPGtGKTt~a-~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFG-MSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHH
Confidence 4999999999999754 33443
No 275
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=79.51 E-value=1.6 Score=47.58 Aligned_cols=32 Identities=3% Similarity=-0.082 Sum_probs=24.3
Q ss_pred CcEEEEeccc-hhHHHHHHHHhhCCCceeecCC
Q psy9399 270 GQAVVFTATK-RDADIIADRLNISGFLAAPLHG 301 (453)
Q Consensus 270 ~~~lvf~~~~-~~~~~l~~~L~~~~~~~~~~~~ 301 (453)
+.+.|.+.+. ..+..+.+.|...++++....+
T Consensus 343 ~diAVL~R~~~~~~~~i~~~L~~~gIP~~~~~~ 375 (1166)
T 3u4q_B 343 KDVAILARQPEDYKDMVKEVFADYEIPYFIDGK 375 (1166)
T ss_dssp GGEEEEESCGGGTHHHHHHHHHHTTCCEEESSC
T ss_pred hheEEEeCChHHHHHHHHHHHHHcCCCEEECCC
Confidence 3588888887 4788899999888887665444
No 276
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=79.30 E-value=3.7 Score=48.29 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=32.5
Q ss_pred HHHHHHHHhCCCCCCcHHHH-H---HHHHHhcCCcEEEEcCCCchHHHHHHHH
Q psy9399 10 ELVLKALVKVGYTKPTGVQE-Q---AIPAAISGRDLIVSSQTGSGKTAAFMLP 58 (453)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~Q~-~---~~~~~~~~~~~lv~a~TGsGKT~~~l~~ 58 (453)
+.+.+.+.+.|+. +.+.+. + .+..+...+.+++.||||+|||.++-..
T Consensus 892 ~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~L 943 (2695)
T 4akg_A 892 QCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTV 943 (2695)
T ss_dssp HHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHH
Confidence 4456667778885 555553 2 3333445677999999999999876433
No 277
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=79.23 E-value=3.5 Score=34.90 Aligned_cols=75 Identities=17% Similarity=0.108 Sum_probs=46.4
Q ss_pred CCCCcEEEEeccchhHHHHHHHHhh----CCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeC-Cc-----ccCCCCC
Q psy9399 267 KRVGQAVVFTATKRDADIIADRLNI----SGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATD-VA-----ARGIDVP 336 (453)
Q Consensus 267 ~~~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~-----~~Gvdi~ 336 (453)
..+.++||.++++.-+..+++.+.. .+..+..++|+.+..+.... +. ..+|+|+|. .+ ...+++.
T Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~ 154 (224)
T 1qde_A 80 VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTD 154 (224)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCT
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchh
Confidence 4456899999999999888887765 36778888888665443322 22 378999994 22 2345566
Q ss_pred CCcEEEEcCC
Q psy9399 337 AITHVFNYDL 346 (453)
Q Consensus 337 ~~~~Vi~~~~ 346 (453)
.+++||....
T Consensus 155 ~~~~iViDEa 164 (224)
T 1qde_A 155 KIKMFILDEA 164 (224)
T ss_dssp TCCEEEEETH
T ss_pred hCcEEEEcCh
Confidence 7777776443
No 278
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=79.20 E-value=23 Score=33.46 Aligned_cols=20 Identities=30% Similarity=0.222 Sum_probs=14.8
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAFMLPA 59 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~l~~~ 59 (453)
-+.+.++.|+|||......+
T Consensus 100 vi~i~G~~GsGKTT~~~~LA 119 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLA 119 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37778999999997544433
No 279
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=78.99 E-value=1.2 Score=41.31 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=18.0
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHhh
Q psy9399 37 SGRDLIVSSQTGSGKTAAFMLPALHKF 63 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~~l~~~~~~l 63 (453)
.+..+++.||||||||. .+-.++..+
T Consensus 122 ~~g~i~I~GptGSGKTT-lL~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKST-TLAAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHH-HHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHH-HHHHHHhcc
Confidence 34469999999999997 344444433
No 280
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=78.84 E-value=0.91 Score=36.76 Aligned_cols=16 Identities=25% Similarity=0.465 Sum_probs=13.6
Q ss_pred cEEEEcCCCchHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAF 55 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~ 55 (453)
-+++.|++|||||...
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999854
No 281
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=78.76 E-value=1.3 Score=36.41 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCchHHHHHHHH
Q psy9399 38 GRDLIVSSQTGSGKTAAFMLP 58 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~l~~ 58 (453)
.+.+++.|++|||||.+.-..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~L 25 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQL 25 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 356899999999999855433
No 282
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=78.73 E-value=2 Score=36.29 Aligned_cols=23 Identities=30% Similarity=0.221 Sum_probs=17.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHH
Q psy9399 38 GRDLIVSSQTGSGKTAAFMLPAL 60 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~l~~~~ 60 (453)
|.-+++.||+|+|||..+...+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45589999999999975544433
No 283
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=78.73 E-value=4.3 Score=38.80 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=19.0
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHh
Q psy9399 37 SGRDLIVSSQTGSGKTAAFMLPALHK 62 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~~l~~~~~~ 62 (453)
.|.-++|.|++|+|||..++-.+...
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 34459999999999998555555444
No 284
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=78.63 E-value=1.3 Score=37.09 Aligned_cols=19 Identities=26% Similarity=0.594 Sum_probs=14.7
Q ss_pred cCCcEEEEcCCCchHHHHH
Q psy9399 37 SGRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~~ 55 (453)
.++-+.+.||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3567999999999999743
No 285
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=78.54 E-value=1.2 Score=39.10 Aligned_cols=16 Identities=31% Similarity=0.345 Sum_probs=13.6
Q ss_pred EEEEcCCCchHHHHHH
Q psy9399 41 LIVSSQTGSGKTAAFM 56 (453)
Q Consensus 41 ~lv~a~TGsGKT~~~l 56 (453)
+++.||||||||..+.
T Consensus 4 i~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCcCHHHHHH
Confidence 6899999999997543
No 286
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=78.42 E-value=0.66 Score=41.31 Aligned_cols=50 Identities=16% Similarity=0.132 Sum_probs=27.7
Q ss_pred CCCCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHh--cCCcEEEEcCCCchHHHH
Q psy9399 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAI--SGRDLIVSSQTGSGKTAA 54 (453)
Q Consensus 2 ~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~--~~~~~lv~a~TGsGKT~~ 54 (453)
+|+++.-.+.....+...-.. + ....++..+- -.+.+++.||+|+|||..
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~-~--~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEF-L--KNPSRFHEMGARIPKGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHH-H--HCHHHHHHTTCCCCCEEEEECCTTSSHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHH-H--HCHHHHHHcCCCCCCeEEEECCCcChHHHH
Confidence 566666666666666543110 0 0012222221 123499999999999974
No 287
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=78.35 E-value=1.2 Score=39.82 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCchHHHHH
Q psy9399 38 GRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~ 55 (453)
.+.+++.||+|+|||..+
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 467999999999999744
No 288
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=77.97 E-value=3.8 Score=44.67 Aligned_cols=62 Identities=15% Similarity=0.160 Sum_probs=41.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATER 119 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 119 (453)
..+|.|..|||||.+...-++..+....... . ....-.-.++|+++=|+.-+.++.+++.+
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~-~------------------~~~~~~~~~ILvvTFT~aAA~EMr~RI~~ 78 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSA-A------------------FPRPLTVEELLVVTFTEAATAELRGRIRS 78 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSS-S------------------CSSCCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCccc-c------------------cCCCCCHHHEEEEeccHHHHHHHHHHHHH
Confidence 4699999999999887777777665311000 0 00001234799999999999998888776
Q ss_pred H
Q psy9399 120 Y 120 (453)
Q Consensus 120 ~ 120 (453)
.
T Consensus 79 ~ 79 (1180)
T 1w36_B 79 N 79 (1180)
T ss_dssp H
T ss_pred H
Confidence 4
No 289
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=77.95 E-value=1.3 Score=39.70 Aligned_cols=17 Identities=24% Similarity=0.151 Sum_probs=14.2
Q ss_pred CcEEEEcCCCchHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~ 55 (453)
..+++.||+|+|||..+
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35889999999999744
No 290
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=77.92 E-value=0.36 Score=42.70 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=15.0
Q ss_pred CcEEEEcCCCchHHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAFM 56 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l 56 (453)
+.+++.||+|+|||..+-
T Consensus 45 ~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp SCCCCBCSSCSSHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 569999999999997543
No 291
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=77.73 E-value=1.6 Score=36.61 Aligned_cols=18 Identities=17% Similarity=0.477 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCchHHHH
Q psy9399 37 SGRDLIVSSQTGSGKTAA 54 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~ 54 (453)
.++-+++.||+|+|||..
T Consensus 18 ~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECcCCCCHHHH
Confidence 456689999999999974
No 292
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=77.43 E-value=7.3 Score=36.35 Aligned_cols=72 Identities=14% Similarity=0.229 Sum_probs=53.2
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHh----cCCCCEEEeChHHHHHHHhcCCCCCCC
Q psy9399 97 QPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLL----SRNPEILLATPGRLIDHMNSGKINFSH 172 (453)
Q Consensus 97 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~~ 172 (453)
+.+++|.|+++.-+..+++.+...+ +.+..++|+....+....+ .+..+|+|+|. .....+++..
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~~-----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~ 334 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKEG-----HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN------VCARGIDVEQ 334 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTT-----CCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG------GGTSSCCCTT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhCC-----CeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC------ccccCCCccC
Confidence 4589999999999999999888763 6777888887765543332 34678999993 3334457788
Q ss_pred ccEEEEe
Q psy9399 173 LQILVLD 179 (453)
Q Consensus 173 ~~~iIiD 179 (453)
+++||.-
T Consensus 335 ~~~Vi~~ 341 (412)
T 3fht_A 335 VSVVINF 341 (412)
T ss_dssp EEEEEES
T ss_pred CCEEEEE
Confidence 8888853
No 293
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=77.38 E-value=2.5 Score=39.04 Aligned_cols=32 Identities=22% Similarity=0.254 Sum_probs=22.6
Q ss_pred HHHHHhc------CCcEEEEcCCCchHHHHHHHHHHHh
Q psy9399 31 AIPAAIS------GRDLIVSSQTGSGKTAAFMLPALHK 62 (453)
Q Consensus 31 ~~~~~~~------~~~~lv~a~TGsGKT~~~l~~~~~~ 62 (453)
.++.++. +.-+++.|++|+|||..++..+...
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4555554 3459999999999998665555444
No 294
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=77.30 E-value=8.9 Score=33.47 Aligned_cols=75 Identities=17% Similarity=0.148 Sum_probs=52.4
Q ss_pred CCCcEEEEeccchhHHHHHHHHhh----CCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeC-----Ccc--cCCCCC
Q psy9399 268 RVGQAVVFTATKRDADIIADRLNI----SGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATD-----VAA--RGIDVP 336 (453)
Q Consensus 268 ~~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~--~Gvdi~ 336 (453)
.+.+++|.++++.-+...++.++. .+..+..+.|+........ .+..+ .+|+|+|. .+. .++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQ---KLGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHH---HHHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHH---HhcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 456899999999999998888875 3567778888877654333 33344 78999993 111 246777
Q ss_pred CCcEEEEcCC
Q psy9399 337 AITHVFNYDL 346 (453)
Q Consensus 337 ~~~~Vi~~~~ 346 (453)
++.+||....
T Consensus 201 ~l~~lViDEa 210 (262)
T 3ly5_A 201 NLQCLVIDEA 210 (262)
T ss_dssp TCCEEEECSH
T ss_pred cCCEEEEcCh
Confidence 8888776443
No 295
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=77.22 E-value=1.4 Score=38.60 Aligned_cols=51 Identities=14% Similarity=0.245 Sum_probs=26.9
Q ss_pred CCCCCCCCHHHHHHHHhCC--CCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q psy9399 2 NFKSIGLHELVLKALVKVG--YTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 2 ~~~~l~l~~~~~~~l~~~~--~~~~~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~ 55 (453)
+|+++.-.+...+.+...- +..+..++.. .....+.+++.||+|+|||..+
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKL---GGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHH
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHc---CCCCCCeEEEECcCCCCHHHHH
Confidence 5677766666665554320 1111111110 0112346999999999999743
No 296
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=77.22 E-value=1.1 Score=41.12 Aligned_cols=19 Identities=47% Similarity=0.719 Sum_probs=16.6
Q ss_pred HhcCCcEEEEcCCCchHHH
Q psy9399 35 AISGRDLIVSSQTGSGKTA 53 (453)
Q Consensus 35 ~~~~~~~lv~a~TGsGKT~ 53 (453)
+..++.+.+.||||||||.
T Consensus 168 i~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHHTCCEEEEESTTSCHHH
T ss_pred ccCCCEEEEECCCCCCHHH
Confidence 4467889999999999997
No 297
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=76.96 E-value=1.3 Score=36.71 Aligned_cols=16 Identities=31% Similarity=0.744 Sum_probs=14.0
Q ss_pred CcEEEEcCCCchHHHH
Q psy9399 39 RDLIVSSQTGSGKTAA 54 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~ 54 (453)
+.++++||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999974
No 298
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=76.93 E-value=1.3 Score=36.22 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q psy9399 37 SGRDLIVSSQTGSGKTAAFM 56 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~~l 56 (453)
.+..+++.|++|||||...-
T Consensus 10 ~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHH
Confidence 45679999999999998543
No 299
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=76.91 E-value=1.5 Score=39.81 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=15.1
Q ss_pred cEEEEcCCCchHHHHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAFMLP 58 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~l~~ 58 (453)
.++|.||||+|||..+...
T Consensus 7 ~i~i~GptGsGKTtla~~L 25 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMAL 25 (323)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4889999999999754433
No 300
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=76.90 E-value=1.3 Score=36.19 Aligned_cols=17 Identities=24% Similarity=0.485 Sum_probs=14.3
Q ss_pred CcEEEEcCCCchHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~ 55 (453)
.-+++.|++|||||.+.
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45899999999999854
No 301
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=76.49 E-value=1.6 Score=36.52 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=15.7
Q ss_pred hcCCcEEEEcCCCchHHHH
Q psy9399 36 ISGRDLIVSSQTGSGKTAA 54 (453)
Q Consensus 36 ~~~~~~lv~a~TGsGKT~~ 54 (453)
..+.-+.+.||+|||||..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp CCCCEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3456689999999999974
No 302
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=76.46 E-value=1.4 Score=40.99 Aligned_cols=18 Identities=44% Similarity=0.748 Sum_probs=15.1
Q ss_pred CcEEEEcCCCchHHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAFM 56 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l 56 (453)
+.+++.||+|+|||..+-
T Consensus 71 ~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp CEEEEEESTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 469999999999998543
No 303
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=76.12 E-value=8.5 Score=35.57 Aligned_cols=76 Identities=12% Similarity=0.188 Sum_probs=55.5
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHh----cCCCCEEEeChHHHHHHHhcCCCCCC
Q psy9399 96 AQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLL----SRNPEILLATPGRLIDHMNSGKINFS 171 (453)
Q Consensus 96 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~ 171 (453)
...++||.|+++.-+..+++.+...+ ..+..++|+....+....+ .+..+|+|+|. .....+++.
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~~-----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip 310 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSEG-----HEVSILHGDLQTQERDRLIDDFREGRSKVLITTN------VLARGIDIP 310 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHTT-----CCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG------GGSSSCCCT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhcC-----CcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhcCCCcc
Confidence 45689999999999999998888753 6777888887765543332 34678999993 334455788
Q ss_pred CccEEEEechh
Q psy9399 172 HLQILVLDEAD 182 (453)
Q Consensus 172 ~~~~iIiDE~h 182 (453)
.+++||.-+..
T Consensus 311 ~~~~Vi~~~~p 321 (395)
T 3pey_A 311 TVSMVVNYDLP 321 (395)
T ss_dssp TEEEEEESSCC
T ss_pred cCCEEEEcCCC
Confidence 89998875544
No 304
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=76.11 E-value=2.6 Score=38.27 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=17.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAFMLPALH 61 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~l~~~~~ 61 (453)
-+++.|++|+|||...+..+..
T Consensus 100 i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 100 VTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999865555543
No 305
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=76.01 E-value=3.8 Score=39.83 Aligned_cols=18 Identities=33% Similarity=0.508 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCchHHHHH
Q psy9399 38 GRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~ 55 (453)
+.+++|.|+||||||.+.
T Consensus 167 ~pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGV 184 (512)
T ss_dssp SCSEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457999999999999743
No 306
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=75.79 E-value=3.4 Score=36.57 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=19.9
Q ss_pred HHhcCCcEEEEcCCCchHHHHHHHHHH
Q psy9399 34 AAISGRDLIVSSQTGSGKTAAFMLPAL 60 (453)
Q Consensus 34 ~~~~~~~~lv~a~TGsGKT~~~l~~~~ 60 (453)
.+..|.-+++.||+|+|||...+..+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 345667799999999999985544443
No 307
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=75.76 E-value=1.3 Score=41.33 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=15.6
Q ss_pred hcCCcEEEEcCCCchHHHH
Q psy9399 36 ISGRDLIVSSQTGSGKTAA 54 (453)
Q Consensus 36 ~~~~~~lv~a~TGsGKT~~ 54 (453)
..+..+++.||||||||..
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3456699999999999973
No 308
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=75.67 E-value=1.7 Score=36.52 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=16.1
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q psy9399 36 ISGRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 36 ~~~~~~lv~a~TGsGKT~~~ 55 (453)
..+.-++++||+|||||...
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHH
Confidence 34566999999999999743
No 309
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=75.47 E-value=1.9 Score=36.08 Aligned_cols=18 Identities=33% Similarity=0.565 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCchHHHH
Q psy9399 37 SGRDLIVSSQTGSGKTAA 54 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~ 54 (453)
.|.-+.+.||+|||||..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 456688999999999974
No 310
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=75.39 E-value=1.3 Score=36.67 Aligned_cols=20 Identities=35% Similarity=0.640 Sum_probs=16.0
Q ss_pred HhcCCcEEEEcCCCchHHHH
Q psy9399 35 AISGRDLIVSSQTGSGKTAA 54 (453)
Q Consensus 35 ~~~~~~~lv~a~TGsGKT~~ 54 (453)
+..+.-+++.||+|||||..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHH
Confidence 33456689999999999973
No 311
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=75.37 E-value=1.8 Score=40.44 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCchHHHHHH
Q psy9399 38 GRDLIVSSQTGSGKTAAFM 56 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~l 56 (453)
..++++.||+|+|||..+-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 3569999999999997543
No 312
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=75.30 E-value=6.3 Score=39.93 Aligned_cols=70 Identities=7% Similarity=0.043 Sum_probs=47.7
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccE
Q psy9399 96 AQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQI 175 (453)
Q Consensus 96 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 175 (453)
.+.+++|+||++.-++.+++.+... .+++..++|...............+|+|+|. .+ ...+++. +++
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~-----g~~v~~lHg~eR~~v~~~F~~g~~~VLVaTd-----v~-e~GIDip-v~~ 476 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRA-----GKRVIQLNRKSYDTEYPKCKNGDWDFVITTD-----IS-EMGANFG-ASR 476 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSSSHHHHGGGGGTCCCSEEEECG-----GG-GTTCCCC-CSE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhC-----CCeEEEeChHHHHHHHHHHHCCCceEEEECc-----hh-hcceeeC-CcE
Confidence 3568999999999999998888765 3778888885433322233345678999993 22 2334566 777
Q ss_pred EE
Q psy9399 176 LV 177 (453)
Q Consensus 176 iI 177 (453)
||
T Consensus 477 VI 478 (673)
T 2wv9_A 477 VI 478 (673)
T ss_dssp EE
T ss_pred EE
Confidence 66
No 313
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=75.30 E-value=1.8 Score=39.69 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=14.6
Q ss_pred cEEEEcCCCchHHHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAFML 57 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~l~ 57 (453)
-++|.||||||||..+..
T Consensus 9 lI~I~GptgSGKTtla~~ 26 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIE 26 (340)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHH
Confidence 478999999999975433
No 314
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=75.27 E-value=4.4 Score=38.56 Aligned_cols=55 Identities=7% Similarity=0.002 Sum_probs=41.7
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeCh
Q psy9399 97 QPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATP 156 (453)
Q Consensus 97 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~ 156 (453)
+.+++|+||++.-++.+++.+.+. .+.+..++|+...........+..+|+|+|.
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA-----GKKVLYLNRKTFESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTTHHHHTTHHHHSCCSEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc-----CCeEEEeCCccHHHHHHhhcCCCCeEEEECc
Confidence 458999999999999999988876 3778888887544333334455789999993
No 315
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=75.03 E-value=2 Score=36.60 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=15.6
Q ss_pred hcCCcEEEEcCCCchHHHH
Q psy9399 36 ISGRDLIVSSQTGSGKTAA 54 (453)
Q Consensus 36 ~~~~~~lv~a~TGsGKT~~ 54 (453)
..|+-+.+.||+|+|||..
T Consensus 21 ~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp -CCCCEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3567799999999999973
No 316
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=74.87 E-value=3.3 Score=37.19 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=15.9
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAFMLPA 59 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~~~ 59 (453)
+.+++.|++|+|||......+
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 458889999999997554433
No 317
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=74.80 E-value=1.4 Score=35.91 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=13.5
Q ss_pred cEEEEcCCCchHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAF 55 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~ 55 (453)
-+++.|++|||||..+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3789999999999854
No 318
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=74.61 E-value=9.5 Score=35.47 Aligned_cols=72 Identities=6% Similarity=0.114 Sum_probs=52.2
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHh----cCCCCEEEeChHHHHHHHhcCCCCCC
Q psy9399 96 AQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLL----SRNPEILLATPGRLIDHMNSGKINFS 171 (453)
Q Consensus 96 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~ 171 (453)
...++||.|+++.-+..+.+.+...+ +.+..++|+....+..... .+...|+|+|. .....+++.
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~~-----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~------~~~~Gidip 325 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDLG-----YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD------LLTRGIDIQ 325 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHHT-----CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS------CSSSSCCCT
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhcC-----CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC------ccccCCCcc
Confidence 34689999999999999999888764 6777888887765443222 34678999993 223345677
Q ss_pred CccEEEE
Q psy9399 172 HLQILVL 178 (453)
Q Consensus 172 ~~~~iIi 178 (453)
.+++||.
T Consensus 326 ~~~~Vi~ 332 (400)
T 1s2m_A 326 AVNVVIN 332 (400)
T ss_dssp TEEEEEE
T ss_pred CCCEEEE
Confidence 8888775
No 319
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=74.50 E-value=2 Score=41.41 Aligned_cols=18 Identities=33% Similarity=0.636 Sum_probs=15.4
Q ss_pred CcEEEEcCCCchHHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAFM 56 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l 56 (453)
+++++.||+|+|||..+.
T Consensus 64 ~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcCCHHHHHH
Confidence 569999999999998554
No 320
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=74.19 E-value=16 Score=36.86 Aligned_cols=78 Identities=17% Similarity=0.293 Sum_probs=57.0
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHH----hcCCCCEEEeChHHHHHHHhcCCCCCC
Q psy9399 96 AQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQL----LSRNPEILLATPGRLIDHMNSGKINFS 171 (453)
Q Consensus 96 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ilv~T~~~l~~~l~~~~~~~~ 171 (453)
.+.++||.|+++..+..+.+.+.+.+ +.+..++++....+.... ..+..+|+|+|. +....+.+.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~g-----i~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~------~l~~GlDip 512 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIG-----IKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN------LLREGLDIP 512 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTT-----CCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC------CCSTTCCCT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcC-----CCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc------hhhCCcccC
Confidence 35699999999999999999888764 677778877665444332 234678999984 223445678
Q ss_pred CccEEEEechhhh
Q psy9399 172 HLQILVLDEADRM 184 (453)
Q Consensus 172 ~~~~iIiDE~h~~ 184 (453)
.+++||+-+++.+
T Consensus 513 ~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 513 EVSLVAILDADKE 525 (661)
T ss_dssp TEEEEEETTTTCC
T ss_pred CCCEEEEeCcccc
Confidence 8999999888754
No 321
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=74.19 E-value=2.2 Score=39.40 Aligned_cols=19 Identities=42% Similarity=0.471 Sum_probs=15.6
Q ss_pred cCCc--EEEEcCCCchHHHHH
Q psy9399 37 SGRD--LIVSSQTGSGKTAAF 55 (453)
Q Consensus 37 ~~~~--~lv~a~TGsGKT~~~ 55 (453)
.|.+ ++..|+||||||.+.
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4666 688999999999865
No 322
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=74.14 E-value=2.2 Score=35.83 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=16.0
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q psy9399 41 LIVSSQTGSGKTAAFMLPALH 61 (453)
Q Consensus 41 ~lv~a~TGsGKT~~~l~~~~~ 61 (453)
.++.|+.|||||..+...+..
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 689999999999865444433
No 323
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=74.09 E-value=1.2 Score=36.35 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCchHHHHH
Q psy9399 37 SGRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~~ 55 (453)
.|.-+.+.||.|||||..+
T Consensus 8 ~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4455889999999999743
No 324
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=74.03 E-value=2.6 Score=47.14 Aligned_cols=89 Identities=12% Similarity=0.165 Sum_probs=54.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATE 118 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 118 (453)
+-+.+.+|.|||||..++..+.+... .+..++++.+.-+|-... ++
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~~~~-------------------------------~g~~~~~i~~e~~~~~~~---~~ 1477 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAAAQR-------------------------------EGKTCAFIDAEHALDPIY---AR 1477 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHH-------------------------------TTCCEEEECTTSCCCHHH---HH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh-------------------------------cCCeEEEEecCCCCCHHH---HH
Confidence 45999999999999976666655433 266889998877775554 45
Q ss_pred HHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHH---HHHHhcCCCCCCCccEEEEechhhhcc
Q psy9399 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRL---IDHMNSGKINFSHLQILVLDEADRMLD 186 (453)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l---~~~l~~~~~~~~~~~~iIiDE~h~~~~ 186 (453)
+++-... +++++-|+.- +.....- ..-..+++||+|.+-.+..
T Consensus 1478 ~~Gv~~~------------------------~l~~~~p~~~e~~l~~~~~~-~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1478 KLGVDID------------------------NLLCSQPDTGEQALEICDAL-ARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp HTTCCGG------------------------GCEEECCSSHHHHHHHHHHH-HHHTCCSEEEESCSTTCCC
T ss_pred HcCCCHH------------------------HeEEeCCCcHHHHHHHHHHH-HHcCCCCEEEEccHHhCCc
Confidence 5553222 2455555332 1111100 0013578999999987764
No 325
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=73.96 E-value=2.1 Score=35.17 Aligned_cols=18 Identities=28% Similarity=0.660 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCchHHHHH
Q psy9399 38 GRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~ 55 (453)
+..+++.|++|||||.+.
T Consensus 10 ~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 10 GINILITGTPGTGKTSMA 27 (184)
T ss_dssp SCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 456999999999999854
No 326
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=73.66 E-value=10 Score=35.34 Aligned_cols=71 Identities=13% Similarity=0.247 Sum_probs=52.0
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHh----cCCCCEEEeChHHHHHHHhcCCCCCCC
Q psy9399 97 QPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLL----SRNPEILLATPGRLIDHMNSGKINFSH 172 (453)
Q Consensus 97 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~~ 172 (453)
..++||.|+++.-+..+.+.+...+ +.+..++|+....+....+ .+...|+|+|. .....+++..
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~~-----~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidi~~ 344 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREAN-----FTVSSMHGDMPQKERESIMKEFRSGASRVLISTD------VWARGLDVPQ 344 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTT-----CCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG------GGSSSCCCTT
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhCC-----CceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhCcCCccc
Confidence 3589999999999999998888753 6777888887755443222 34678999994 2334457788
Q ss_pred ccEEEE
Q psy9399 173 LQILVL 178 (453)
Q Consensus 173 ~~~iIi 178 (453)
+++||.
T Consensus 345 v~~Vi~ 350 (410)
T 2j0s_A 345 VSLIIN 350 (410)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888885
No 327
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=73.59 E-value=12 Score=35.56 Aligned_cols=69 Identities=17% Similarity=0.187 Sum_probs=51.3
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHh----cCCCCEEEeChHHHHHHHhcCCCCCCCcc
Q psy9399 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLL----SRNPEILLATPGRLIDHMNSGKINFSHLQ 174 (453)
Q Consensus 99 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~ 174 (453)
++||.|+++.-+..+.+.+...+ +.+..++|+....+....+ .+..+|+|+|. .....+++..++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~~-----~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~------v~~rGlDi~~v~ 370 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEKE-----FPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS------VASRGLDIKNIK 370 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTT-----CCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG------GGTSSCCCTTCC
T ss_pred CEEEEEeCcHHHHHHHHHHHhCC-----CCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch------hhhCCCCcccCC
Confidence 49999999999999998888753 7788888887765543332 34678999994 333445778888
Q ss_pred EEEE
Q psy9399 175 ILVL 178 (453)
Q Consensus 175 ~iIi 178 (453)
+||.
T Consensus 371 ~VI~ 374 (434)
T 2db3_A 371 HVIN 374 (434)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 328
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=73.55 E-value=2.2 Score=35.10 Aligned_cols=16 Identities=31% Similarity=0.744 Sum_probs=13.5
Q ss_pred CcEEEEcCCCchHHHH
Q psy9399 39 RDLIVSSQTGSGKTAA 54 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~ 54 (453)
+-+.+.||+|+|||..
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 3478999999999974
No 329
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=73.42 E-value=2 Score=40.25 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=14.7
Q ss_pred cEEEEcCCCchHHHHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAFMLP 58 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~l~~ 58 (453)
-++|.||||+|||..+...
T Consensus 4 ~i~i~GptgsGKttla~~L 22 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQL 22 (409)
T ss_dssp EEEEEECSSSSHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHH
Confidence 3789999999999754433
No 330
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=73.41 E-value=3.3 Score=37.03 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=17.3
Q ss_pred HhcCCcEEEEcCCCchHHHHHHH
Q psy9399 35 AISGRDLIVSSQTGSGKTAAFML 57 (453)
Q Consensus 35 ~~~~~~~lv~a~TGsGKT~~~l~ 57 (453)
+..|.-++|.||+|+|||.....
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ 54 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQ 54 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHH
Confidence 33556699999999999974433
No 331
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=73.31 E-value=2 Score=34.58 Aligned_cols=16 Identities=13% Similarity=0.023 Sum_probs=13.6
Q ss_pred cEEEEcCCCchHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAF 55 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~ 55 (453)
.+++.|+.|||||...
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999854
No 332
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=73.15 E-value=5 Score=39.49 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=17.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHh
Q psy9399 39 RDLIVSSQTGSGKTAAFMLPALHK 62 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~~~~~~ 62 (453)
.+++|.|.||||||.+.-..+...
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sL 238 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSI 238 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeeEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999998543334433
No 333
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=73.02 E-value=2.3 Score=39.34 Aligned_cols=19 Identities=21% Similarity=0.315 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCchHHHHHH
Q psy9399 38 GRDLIVSSQTGSGKTAAFM 56 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~l 56 (453)
.+.+++.||+|+|||..+-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3569999999999998543
No 334
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=73.01 E-value=3.8 Score=37.64 Aligned_cols=22 Identities=14% Similarity=-0.071 Sum_probs=16.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAFMLPALH 61 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~l~~~~~ 61 (453)
-+++.||+|+|||...+..+..
T Consensus 124 i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999855544443
No 335
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=72.85 E-value=2.4 Score=34.20 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCchHHHHH
Q psy9399 38 GRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~ 55 (453)
+..+++.|+.|||||...
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 346899999999999743
No 336
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=72.85 E-value=4.2 Score=36.48 Aligned_cols=73 Identities=12% Similarity=0.006 Sum_probs=48.4
Q ss_pred CCCCcEEEEeccchhHHHHHHHHhhC-----CCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeC-Cc-----c-cCCC
Q psy9399 267 KRVGQAVVFTATKRDADIIADRLNIS-----GFLAAPLHGDLHQNARNRTLENLRRGRIKILVATD-VA-----A-RGID 334 (453)
Q Consensus 267 ~~~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~-----~-~Gvd 334 (453)
..+.++||.+++++-|..+++.++.. +..+..+.|+...... .....+|+|+|. .+ . ..++
T Consensus 160 ~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~ 232 (300)
T 3fmo_B 160 NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFID 232 (300)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCC
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCC
Confidence 34447999999999999988877652 4566666666442211 134568999994 22 1 3567
Q ss_pred CCCCcEEEEcCC
Q psy9399 335 VPAITHVFNYDL 346 (453)
Q Consensus 335 i~~~~~Vi~~~~ 346 (453)
+..+.++|....
T Consensus 233 l~~l~~lVlDEa 244 (300)
T 3fmo_B 233 PKKIKVFVLDEA 244 (300)
T ss_dssp GGGCSEEEETTH
T ss_pred hhhceEEEEeCH
Confidence 778888886544
No 337
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=72.85 E-value=1.8 Score=35.62 Aligned_cols=18 Identities=22% Similarity=0.422 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCchHHHHH
Q psy9399 38 GRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~ 55 (453)
+..+++.|++|||||...
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345899999999999743
No 338
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=72.75 E-value=13 Score=33.80 Aligned_cols=75 Identities=19% Similarity=0.234 Sum_probs=52.6
Q ss_pred CCCceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHh----cCCCCEEEeChHHHHHHHhcCCCCC
Q psy9399 95 PAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLL----SRNPEILLATPGRLIDHMNSGKINF 170 (453)
Q Consensus 95 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~ 170 (453)
..+.+++|.|+++.-+..+.+.+.+.+ +.+..++|+....+..... .+..+|+|+|. .+.. .+++
T Consensus 236 ~~~~~~lvf~~~~~~~~~l~~~L~~~~-----~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-~~~~-----Gid~ 304 (367)
T 1hv8_A 236 NKEFYGLVFCKTKRDTKELASMLRDIG-----FKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-VMSR-----GIDV 304 (367)
T ss_dssp STTCCEEEECSSHHHHHHHHHHHHHTT-----CCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-THHH-----HCCC
T ss_pred cCCCcEEEEECCHHHHHHHHHHHHhcC-----CCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-hhhc-----CCCc
Confidence 345689999999999999999888753 6778888887755443222 34678999993 2222 2356
Q ss_pred CCccEEEEec
Q psy9399 171 SHLQILVLDE 180 (453)
Q Consensus 171 ~~~~~iIiDE 180 (453)
..+++||.-.
T Consensus 305 ~~~~~Vi~~~ 314 (367)
T 1hv8_A 305 NDLNCVINYH 314 (367)
T ss_dssp SCCSEEEESS
T ss_pred ccCCEEEEec
Confidence 7788887643
No 339
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=72.52 E-value=1.3 Score=42.79 Aligned_cols=49 Identities=22% Similarity=0.341 Sum_probs=27.5
Q ss_pred CCCCCCCCHHHHHHHHhCC--CCCCcHHHHHHHHHHh--cCCcEEEEcCCCchHHHHH
Q psy9399 2 NFKSIGLHELVLKALVKVG--YTKPTGVQEQAIPAAI--SGRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 2 ~~~~l~l~~~~~~~l~~~~--~~~~~~~Q~~~~~~~~--~~~~~lv~a~TGsGKT~~~ 55 (453)
+|+++.=.++....+...- +..+. .+..+- -.+.+++.||+|+|||+.+
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~-----~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPS-----KFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTH-----HHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChH-----HHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 5666666666655555420 11111 111111 1246999999999999854
No 340
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=72.51 E-value=8.6 Score=36.76 Aligned_cols=69 Identities=10% Similarity=0.115 Sum_probs=47.2
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEE
Q psy9399 97 QPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176 (453)
Q Consensus 97 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~i 176 (453)
..++||.||++.-++++++.+...+ +.+..+++............+..+|+|+|. +....+++.. ++|
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~g-----~~~~~lh~~~~~~~~~~f~~g~~~vLVaT~------v~~~GiDip~-~~V 255 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSG-----KRVIQLSRKTFDTEYPKTKLTDWDFVVTTD------ISEMGANFRA-GRV 255 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTT-----CCEEEECTTTHHHHGGGGGSSCCSEEEECG------GGGSSCCCCC-SEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcC-----CeEEECCHHHHHHHHHhhccCCceEEEECC------HHHhCcCCCC-CEE
Confidence 4589999999999999998887653 677778776653333333345679999993 2233345666 665
Q ss_pred E
Q psy9399 177 V 177 (453)
Q Consensus 177 I 177 (453)
|
T Consensus 256 I 256 (451)
T 2jlq_A 256 I 256 (451)
T ss_dssp E
T ss_pred E
Confidence 5
No 341
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=71.86 E-value=22 Score=35.96 Aligned_cols=77 Identities=17% Similarity=0.210 Sum_probs=55.5
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHH----hcCCCCEEEeChHHHHHHHhcCCCCCCC
Q psy9399 97 QPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQL----LSRNPEILLATPGRLIDHMNSGKINFSH 172 (453)
Q Consensus 97 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ilv~T~~~l~~~l~~~~~~~~~ 172 (453)
+.++||.|+++..+..+.+.+.+.+ +.+..++++....+.... ..+..+|+|+|. .....+.+..
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~g-----i~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~------~l~~GlDip~ 507 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEHG-----IRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN------LLREGLDIPE 507 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTT-----CCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC------CCCTTCCCTT
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcC-----CCceeecCCCCHHHHHHHHHHhhcCCceEEEccC------hhhcCccCCC
Confidence 5599999999999999999888764 677777877665444333 234678999983 2233446788
Q ss_pred ccEEEEechhhh
Q psy9399 173 LQILVLDEADRM 184 (453)
Q Consensus 173 ~~~iIiDE~h~~ 184 (453)
+++||+=+++..
T Consensus 508 v~lVI~~d~d~~ 519 (664)
T 1c4o_A 508 VSLVAILDADKE 519 (664)
T ss_dssp EEEEEETTTTSC
T ss_pred CCEEEEeCCccc
Confidence 999888887643
No 342
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=71.71 E-value=2.1 Score=38.48 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=14.1
Q ss_pred cEEEEcCCCchHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAF 55 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~ 55 (453)
.+++.||+|+|||..+
T Consensus 49 ~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEESCSSSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 5999999999999754
No 343
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=71.68 E-value=2.6 Score=35.43 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=15.9
Q ss_pred HHhcCCcEEEEcCCCchHHHH
Q psy9399 34 AAISGRDLIVSSQTGSGKTAA 54 (453)
Q Consensus 34 ~~~~~~~~lv~a~TGsGKT~~ 54 (453)
.+..|+-+.+.||+|+|||..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 466777799999999999974
No 344
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=71.27 E-value=3.9 Score=36.88 Aligned_cols=16 Identities=38% Similarity=0.569 Sum_probs=13.5
Q ss_pred CcEEEEcCCCchHHHH
Q psy9399 39 RDLIVSSQTGSGKTAA 54 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~ 54 (453)
.-+.+.||+|+|||..
T Consensus 103 ~vi~lvG~nGsGKTTl 118 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTT 118 (304)
T ss_dssp SEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 4488899999999974
No 345
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=70.62 E-value=4.3 Score=36.59 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=14.3
Q ss_pred EEEEcCCCchHHHHHHHH
Q psy9399 41 LIVSSQTGSGKTAAFMLP 58 (453)
Q Consensus 41 ~lv~a~TGsGKT~~~l~~ 58 (453)
+++.+++|+|||......
T Consensus 107 i~ivG~~GsGKTTl~~~L 124 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKL 124 (306)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEEcCCCChHHHHHHHH
Confidence 788999999999754333
No 346
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=70.32 E-value=1.8 Score=35.09 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCchHHHHH
Q psy9399 38 GRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~ 55 (453)
+..+++.|+.|||||..+
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 345889999999999743
No 347
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=70.28 E-value=2.9 Score=34.83 Aligned_cols=19 Identities=37% Similarity=0.532 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCchHHHHH
Q psy9399 37 SGRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~~ 55 (453)
.+..+++.||.|||||...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3456999999999999743
No 348
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=70.16 E-value=2.1 Score=33.87 Aligned_cols=15 Identities=33% Similarity=0.466 Sum_probs=13.2
Q ss_pred cEEEEcCCCchHHHH
Q psy9399 40 DLIVSSQTGSGKTAA 54 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~ 54 (453)
-.+|.||+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 478999999999974
No 349
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=69.92 E-value=2.6 Score=38.54 Aligned_cols=17 Identities=24% Similarity=0.429 Sum_probs=14.7
Q ss_pred CcEEEEcCCCchHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~ 55 (453)
..+++.||+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 56999999999999743
No 350
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=69.46 E-value=11 Score=31.17 Aligned_cols=21 Identities=33% Similarity=0.379 Sum_probs=14.2
Q ss_pred EEEcCCCchHHHHHHHHHHHh
Q psy9399 42 IVSSQTGSGKTAAFMLPALHK 62 (453)
Q Consensus 42 lv~a~TGsGKT~~~l~~~~~~ 62 (453)
+..+.-|+|||.+....+...
T Consensus 6 v~s~kgG~GKTt~a~~la~~l 26 (206)
T 4dzz_A 6 FLNPKGGSGKTTAVINIATAL 26 (206)
T ss_dssp ECCSSTTSSHHHHHHHHHHHH
T ss_pred EEeCCCCccHHHHHHHHHHHH
Confidence 335678899998765555444
No 351
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=69.39 E-value=3.1 Score=35.41 Aligned_cols=19 Identities=37% Similarity=0.574 Sum_probs=15.4
Q ss_pred hcCCcEEEEcCCCchHHHH
Q psy9399 36 ISGRDLIVSSQTGSGKTAA 54 (453)
Q Consensus 36 ~~~~~~lv~a~TGsGKT~~ 54 (453)
..|+-+++.||.|+|||..
T Consensus 14 ~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp -CCCEEEEECCTTSCHHHH
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 3556699999999999974
No 352
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=69.24 E-value=1.4 Score=37.86 Aligned_cols=20 Identities=40% Similarity=0.532 Sum_probs=12.3
Q ss_pred HhcCCcEEEEcCCCchHHHH
Q psy9399 35 AISGRDLIVSSQTGSGKTAA 54 (453)
Q Consensus 35 ~~~~~~~lv~a~TGsGKT~~ 54 (453)
+..|.-+.+.||+|+|||..
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp EECCCEEEEECSCC----CH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34566789999999999974
No 353
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=68.86 E-value=1.9 Score=39.52 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCchHHHHH
Q psy9399 38 GRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~ 55 (453)
..++++.||+|+|||..+
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 356999999999999743
No 354
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=68.45 E-value=4.6 Score=38.70 Aligned_cols=29 Identities=21% Similarity=0.215 Sum_probs=21.0
Q ss_pred HHHHH---hcCCcEEEEcCCCchHHHHHHHHH
Q psy9399 31 AIPAA---ISGRDLIVSSQTGSGKTAAFMLPA 59 (453)
Q Consensus 31 ~~~~~---~~~~~~lv~a~TGsGKT~~~l~~~ 59 (453)
+++.+ ..|+..++.|+.|+|||......+
T Consensus 141 ~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~ 172 (473)
T 1sky_E 141 VVDLLAPYIKGGKIGLFGGAGVGKTVLIQELI 172 (473)
T ss_dssp HHHHHSCEETTCEEEEECCSSSCHHHHHHHHH
T ss_pred HHHHHhhhccCCEEEEECCCCCCccHHHHHHH
Confidence 45544 367789999999999997544333
No 355
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=68.44 E-value=5.3 Score=29.43 Aligned_cols=37 Identities=16% Similarity=0.198 Sum_probs=32.7
Q ss_pred CCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCC
Q psy9399 267 KRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDL 303 (453)
Q Consensus 267 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 303 (453)
....+++++|.+-..+...+..|...|+++..+.|++
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~ 89 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGI 89 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcH
Confidence 4557899999998889999999999999999999984
No 356
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=68.39 E-value=6.3 Score=31.95 Aligned_cols=24 Identities=25% Similarity=0.057 Sum_probs=16.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhhh
Q psy9399 40 DLIVSSQTGSGKTAAFMLPALHKFA 64 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~l~~~~~~l~ 64 (453)
-+.+.|+.|||||.. +..++..+.
T Consensus 6 ~i~i~G~sGsGKTTl-~~~L~~~l~ 29 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL-MEKWVAAAV 29 (169)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHHHhhH
Confidence 378899999999973 333444443
No 357
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=68.28 E-value=2.1 Score=35.23 Aligned_cols=17 Identities=29% Similarity=0.388 Sum_probs=14.2
Q ss_pred CcEEEEcCCCchHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~ 55 (453)
..+++.|++|||||...
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34889999999999854
No 358
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=68.08 E-value=2.1 Score=38.24 Aligned_cols=16 Identities=38% Similarity=0.578 Sum_probs=13.7
Q ss_pred cEEEEcCCCchHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAF 55 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~ 55 (453)
-++++||+|||||..+
T Consensus 35 livl~G~sGsGKSTla 50 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEECCTTSCTHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3889999999999743
No 359
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=67.99 E-value=5.8 Score=32.43 Aligned_cols=17 Identities=29% Similarity=0.305 Sum_probs=14.3
Q ss_pred CcEEEEcCCCchHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~ 55 (453)
..+++.|+.|||||...
T Consensus 14 ~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 45889999999999754
No 360
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=67.96 E-value=19 Score=26.02 Aligned_cols=50 Identities=20% Similarity=0.322 Sum_probs=40.3
Q ss_pred EEEeccchhHHHHHHHHhhCCCceeecCCCCCHHHHHHHHHHHhcCCccE
Q psy9399 273 VVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKI 322 (453)
Q Consensus 273 lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 322 (453)
+||.+..+-..++...++..|..+.++.++-..+.|..-++.|.....+|
T Consensus 6 vvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdv 55 (162)
T 2l82_A 6 VVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDV 55 (162)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEE
T ss_pred EEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCce
Confidence 56666777788888888889999999999988888888888888754444
No 361
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=67.94 E-value=5.2 Score=36.35 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=14.6
Q ss_pred EEEEcCCCchHHHHHHHHH
Q psy9399 41 LIVSSQTGSGKTAAFMLPA 59 (453)
Q Consensus 41 ~lv~a~TGsGKT~~~l~~~ 59 (453)
+.+.+++|+|||......+
T Consensus 108 I~ivG~~G~GKTT~~~~LA 126 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLAKMA 126 (320)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7889999999997554333
No 362
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=67.92 E-value=3 Score=34.75 Aligned_cols=16 Identities=31% Similarity=0.520 Sum_probs=14.0
Q ss_pred cEEEEcCCCchHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAF 55 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~ 55 (453)
-+++.|+.|||||..+
T Consensus 20 ~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVG 35 (202)
T ss_dssp CEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5999999999999754
No 363
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=67.59 E-value=4.8 Score=38.78 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCchHHHHHH
Q psy9399 38 GRDLIVSSQTGSGKTAAFM 56 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~l 56 (453)
..++++.||+|+|||..+-
T Consensus 201 ~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 3569999999999997543
No 364
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=67.32 E-value=3 Score=34.74 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCchHHHHH
Q psy9399 37 SGRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~~ 55 (453)
.+.-+.+.||.|||||..+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3455889999999999754
No 365
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=67.30 E-value=11 Score=34.27 Aligned_cols=14 Identities=14% Similarity=0.361 Sum_probs=12.6
Q ss_pred EEEEcCCCchHHHH
Q psy9399 41 LIVSSQTGSGKTAA 54 (453)
Q Consensus 41 ~lv~a~TGsGKT~~ 54 (453)
+.+.||+|||||..
T Consensus 95 igI~GpsGSGKSTl 108 (321)
T 3tqc_A 95 IGIAGSVAVGKSTT 108 (321)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 78899999999974
No 366
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=67.24 E-value=3.3 Score=33.87 Aligned_cols=17 Identities=24% Similarity=0.390 Sum_probs=14.3
Q ss_pred CcEEEEcCCCchHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~ 55 (453)
..+++.|++|||||...
T Consensus 5 ~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999754
No 367
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=67.21 E-value=3.6 Score=33.06 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=15.5
Q ss_pred CcEEEEcCCCchHHHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAFML 57 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~ 57 (453)
.++++.|+.|||||.+.-.
T Consensus 8 ~~i~l~G~~GsGKSTva~~ 26 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQE 26 (168)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4689999999999985543
No 368
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=66.95 E-value=3.3 Score=34.03 Aligned_cols=16 Identities=25% Similarity=0.474 Sum_probs=13.3
Q ss_pred cEEEEcCCCchHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAF 55 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~ 55 (453)
-+++.||+|+|||...
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 3788999999999743
No 369
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=66.61 E-value=3.8 Score=41.90 Aligned_cols=25 Identities=36% Similarity=0.583 Sum_probs=20.1
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHH
Q psy9399 31 AIPAAISGRD--LIVSSQTGSGKTAAF 55 (453)
Q Consensus 31 ~~~~~~~~~~--~lv~a~TGsGKT~~~ 55 (453)
++..+++|.+ ++..|+||||||.+.
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 5666778877 677899999999864
No 370
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=66.57 E-value=3.8 Score=33.76 Aligned_cols=19 Identities=26% Similarity=0.323 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCchHHHHH
Q psy9399 37 SGRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~~ 55 (453)
.+..+++.|++|||||...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4456999999999999854
No 371
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=66.55 E-value=22 Score=36.66 Aligned_cols=75 Identities=12% Similarity=-0.043 Sum_probs=52.6
Q ss_pred HHhhCCCCcEEEEeccchhHHHHHHHHhh----CCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeCC-c-----ccC
Q psy9399 263 LLRDKRVGQAVVFTATKRDADIIADRLNI----SGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDV-A-----ARG 332 (453)
Q Consensus 263 l~~~~~~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~-----~~G 332 (453)
+.....+.+++|.++|+.-|...++.+.. .|+.+..+.|+++...|.... ..+|+|+|.. + ..+
T Consensus 109 l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~ 182 (853)
T 2fsf_A 109 YLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDN 182 (853)
T ss_dssp HHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHT
T ss_pred HHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhh
Confidence 33334556899999999998887777654 588999999999876554433 3689999942 2 223
Q ss_pred -------CCCCCCcEEEE
Q psy9399 333 -------IDVPAITHVFN 343 (453)
Q Consensus 333 -------vdi~~~~~Vi~ 343 (453)
++...+.++|.
T Consensus 183 ~~~~~~~~~~~~l~~lVl 200 (853)
T 2fsf_A 183 MAFSPEERVQRKLHYALV 200 (853)
T ss_dssp TCSSGGGCCCCSCCEEEE
T ss_pred hhccHhHhcccCCcEEEE
Confidence 44566777664
No 372
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=66.21 E-value=3.5 Score=33.85 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=14.2
Q ss_pred CcEEEEcCCCchHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~ 55 (453)
..+++.|++|||||..+
T Consensus 4 ~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34889999999999854
No 373
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=66.13 E-value=2.6 Score=39.16 Aligned_cols=16 Identities=31% Similarity=0.588 Sum_probs=13.7
Q ss_pred cEEEEcCCCchHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAF 55 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~ 55 (453)
-++|.||+|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999754
No 374
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=66.10 E-value=2.5 Score=35.96 Aligned_cols=19 Identities=32% Similarity=0.177 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCchHHHHH
Q psy9399 37 SGRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~~ 55 (453)
.|.-+.+.||+|+|||...
T Consensus 24 ~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp SSEEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3455999999999999744
No 375
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=66.04 E-value=3.9 Score=33.09 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=14.3
Q ss_pred cEEEEcCCCchHHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAFM 56 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~l 56 (453)
.+++.|+.|||||..+-
T Consensus 6 ~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 6 NIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 58999999999998543
No 376
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=65.79 E-value=4.1 Score=34.26 Aligned_cols=16 Identities=19% Similarity=0.370 Sum_probs=13.6
Q ss_pred EEEEcCCCchHHHHHH
Q psy9399 41 LIVSSQTGSGKTAAFM 56 (453)
Q Consensus 41 ~lv~a~TGsGKT~~~l 56 (453)
+++.|+.|||||..+-
T Consensus 3 I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7899999999998543
No 377
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=65.76 E-value=6.1 Score=35.49 Aligned_cols=16 Identities=25% Similarity=0.561 Sum_probs=13.4
Q ss_pred cEEEEcCCCchHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAF 55 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~ 55 (453)
-+.+.||+|+|||...
T Consensus 102 vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 3789999999999743
No 378
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=65.72 E-value=3.6 Score=34.61 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=19.6
Q ss_pred cHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q psy9399 25 TGVQEQAIPAAISGRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 25 ~~~Q~~~~~~~~~~~~~lv~a~TGsGKT~~~ 55 (453)
++.+... ..+..+..+++.|++|||||...
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHHH
Confidence 3344444 22344556889999999999743
No 379
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=65.65 E-value=3.6 Score=37.07 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCchHHH
Q psy9399 37 SGRDLIVSSQTGSGKTA 53 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~ 53 (453)
.|+-+.|.||+|+|||.
T Consensus 125 ~Ge~vaIvGpsGsGKST 141 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSM 141 (305)
T ss_dssp TCSEEEEECSSSSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 56679999999999996
No 380
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=65.61 E-value=3.7 Score=35.01 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=14.5
Q ss_pred CcEEEEcCCCchHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~ 55 (453)
..+++.|++|||||...
T Consensus 8 ~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45899999999999843
No 381
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=68.89 E-value=1.3 Score=35.96 Aligned_cols=73 Identities=16% Similarity=0.186 Sum_probs=46.7
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHh----cCCCCEEEeChHHHHHHHhcCCCCCCC
Q psy9399 97 QPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLL----SRNPEILLATPGRLIDHMNSGKINFSH 172 (453)
Q Consensus 97 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~~ 172 (453)
+.++||.|+++..+..+.+.+...+ +.+..++|+....+....+ .+...|+|+|. .+ ...+++..
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~~-----~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-~~-----~~Gid~~~ 98 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREAG-----INNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-VA-----ARGIDIPD 98 (170)
Confidence 4589999999999999988887653 5666777765543332222 23567999982 22 12234566
Q ss_pred ccEEEEec
Q psy9399 173 LQILVLDE 180 (453)
Q Consensus 173 ~~~iIiDE 180 (453)
+++||.-+
T Consensus 99 ~~~Vi~~~ 106 (170)
T 2yjt_D 99 VSHVFNFD 106 (170)
Confidence 77766543
No 382
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=65.19 E-value=4.1 Score=33.39 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=13.5
Q ss_pred cEEEEcCCCchHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAF 55 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~ 55 (453)
.+++.|+.|||||...
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999743
No 383
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=65.17 E-value=3.9 Score=32.89 Aligned_cols=16 Identities=19% Similarity=0.285 Sum_probs=13.8
Q ss_pred cEEEEcCCCchHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAF 55 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~ 55 (453)
.+++.|++|||||.+.
T Consensus 4 ~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVG 19 (173)
T ss_dssp CEEEESCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4889999999999854
No 384
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=64.96 E-value=29 Score=35.82 Aligned_cols=77 Identities=10% Similarity=0.038 Sum_probs=54.4
Q ss_pred HHHHhhCCCCcEEEEeccchhHHHHHHHHhh----CCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeC-Cc-----c
Q psy9399 261 DYLLRDKRVGQAVVFTATKRDADIIADRLNI----SGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATD-VA-----A 330 (453)
Q Consensus 261 ~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~-----~ 330 (453)
..++....+.+++|.++++.-|.+.++.+.. .|+.+..+.|+++..+|.... ..+|+++|. -+ .
T Consensus 116 P~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~ 189 (844)
T 1tf5_A 116 PVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLR 189 (844)
T ss_dssp HHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHH
Confidence 3333444567899999999999888877654 588999999999887655442 268999994 22 1
Q ss_pred -------cCCCCCCCcEEEE
Q psy9399 331 -------RGIDVPAITHVFN 343 (453)
Q Consensus 331 -------~Gvdi~~~~~Vi~ 343 (453)
..+++..+.++|.
T Consensus 190 D~m~~~~~~l~lr~~~~lVl 209 (844)
T 1tf5_A 190 DNMVLYKEQMVQRPLHFAVI 209 (844)
T ss_dssp HTTCSSGGGCCCCCCCEEEE
T ss_pred HhhhcchhhhcccCCCEEEE
Confidence 2355667777664
No 385
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=64.81 E-value=4.4 Score=33.62 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCchHHHHH
Q psy9399 38 GRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~ 55 (453)
+..+++.|+.|||||...
T Consensus 4 ~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 456899999999999743
No 386
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=64.79 E-value=4.2 Score=38.74 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCchHHHHH
Q psy9399 38 GRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~ 55 (453)
.+++++.||+|+|||..+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 357999999999999754
No 387
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=64.74 E-value=5.2 Score=36.25 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=12.5
Q ss_pred EEEEcCCCchHHHH
Q psy9399 41 LIVSSQTGSGKTAA 54 (453)
Q Consensus 41 ~lv~a~TGsGKT~~ 54 (453)
++|.|+.|||||..
T Consensus 7 ~~i~G~~GaGKTTl 20 (318)
T 1nij_A 7 TLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEESSSSSCHHH
T ss_pred EEEEecCCCCHHHH
Confidence 78999999999973
No 388
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=64.64 E-value=14 Score=34.19 Aligned_cols=75 Identities=16% Similarity=0.089 Sum_probs=52.7
Q ss_pred CCCCcEEEEeccchhHHHHHHHHhh----CCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeC-Cc-----ccCCCCC
Q psy9399 267 KRVGQAVVFTATKRDADIIADRLNI----SGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATD-VA-----ARGIDVP 336 (453)
Q Consensus 267 ~~~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~-----~~Gvdi~ 336 (453)
..+.++||.++++.-+...++.+.. .+..+..++|+.+..+....+. ..+|+|+|. .+ ...+++.
T Consensus 87 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~ 161 (394)
T 1fuu_A 87 VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTD 161 (394)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCT
T ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchh
Confidence 3456999999999999888887764 4678888999988766554443 367999993 22 1234556
Q ss_pred CCcEEEEcCC
Q psy9399 337 AITHVFNYDL 346 (453)
Q Consensus 337 ~~~~Vi~~~~ 346 (453)
.+++||....
T Consensus 162 ~~~~vIiDEa 171 (394)
T 1fuu_A 162 KIKMFILDEA 171 (394)
T ss_dssp TCCEEEEETH
T ss_pred hCcEEEEECh
Confidence 7777776443
No 389
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=64.26 E-value=5.4 Score=38.83 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=19.2
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHh
Q psy9399 37 SGRDLIVSSQTGSGKTAAFMLPALHK 62 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~~l~~~~~~ 62 (453)
.|.-++|.|++|+|||...+-.+...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHH
Confidence 44559999999999998555555443
No 390
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=64.11 E-value=4.1 Score=33.26 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=14.3
Q ss_pred cEEEEcCCCchHHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAFM 56 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~l 56 (453)
.+++.|++|||||.++-
T Consensus 4 ~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp SEEEECSTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 48899999999998543
No 391
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=64.04 E-value=3.7 Score=33.64 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=13.7
Q ss_pred cEEEEcCCCchHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAF 55 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~ 55 (453)
.+++.|++|||||...
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999854
No 392
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=64.03 E-value=4.5 Score=33.40 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCchHHHHH
Q psy9399 38 GRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~ 55 (453)
+.-+++.|++|||||...
T Consensus 12 ~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp SCEEEEEECTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 456899999999999754
No 393
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=64.02 E-value=5.9 Score=39.59 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=18.0
Q ss_pred HHHhcCCcEEEEcCCCchHHHH
Q psy9399 33 PAAISGRDLIVSSQTGSGKTAA 54 (453)
Q Consensus 33 ~~~~~~~~~lv~a~TGsGKT~~ 54 (453)
..+..+..+++.||+|+|||..
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtl 76 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSML 76 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHH
Confidence 3345678899999999999974
No 394
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=63.91 E-value=35 Score=33.04 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=15.2
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAFMLPA 59 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~l~~~ 59 (453)
.++++|++|+|||..+.-.+
T Consensus 103 vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37889999999998654443
No 395
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=63.75 E-value=5 Score=34.95 Aligned_cols=18 Identities=39% Similarity=0.558 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCchHHHHH
Q psy9399 38 GRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~ 55 (453)
+..+++.|++|+|||.+.
T Consensus 48 g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp TCCEEEECSTTSCHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 788999999999999754
No 396
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=63.75 E-value=3.1 Score=35.88 Aligned_cols=17 Identities=29% Similarity=0.526 Sum_probs=14.8
Q ss_pred cCCcEEEEcCCCchHHH
Q psy9399 37 SGRDLIVSSQTGSGKTA 53 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~ 53 (453)
.|+-+.+.||.|||||.
T Consensus 30 ~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST 46 (235)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 45668999999999996
No 397
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=63.73 E-value=5.2 Score=28.92 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=31.9
Q ss_pred CCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCC
Q psy9399 268 RVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDL 303 (453)
Q Consensus 268 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 303 (453)
...+++++|.+-..+...+..|...|+++..+.|++
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGM 90 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccH
Confidence 456899999998899999999999999999998884
No 398
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=63.68 E-value=4.1 Score=34.33 Aligned_cols=16 Identities=25% Similarity=0.335 Sum_probs=13.5
Q ss_pred EEEEcCCCchHHHHHH
Q psy9399 41 LIVSSQTGSGKTAAFM 56 (453)
Q Consensus 41 ~lv~a~TGsGKT~~~l 56 (453)
+++.|+.|||||..+-
T Consensus 3 I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7899999999998543
No 399
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=63.64 E-value=11 Score=36.83 Aligned_cols=74 Identities=12% Similarity=0.189 Sum_probs=48.8
Q ss_pred CCcEEEEeccchhHHHHHHHHhhC----CCceeecCCCCCHHHHHHHHHHHhcCCccEEEEe-CCcc----cC-C-CCCC
Q psy9399 269 VGQAVVFTATKRDADIIADRLNIS----GFLAAPLHGDLHQNARNRTLENLRRGRIKILVAT-DVAA----RG-I-DVPA 337 (453)
Q Consensus 269 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T-~~~~----~G-v-di~~ 337 (453)
+.++||.++++.-+...++.+... ++.+..++|+.+...+...+. . ..+|+|+| +.+. .+ + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI---E-DSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH---H-HCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh---C-CCCEEEECHHHHHHHHHhCccccccc
Confidence 678999999999888888877653 889999999986554432221 1 36899999 3333 22 3 5667
Q ss_pred CcEEEEcCC
Q psy9399 338 ITHVFNYDL 346 (453)
Q Consensus 338 ~~~Vi~~~~ 346 (453)
+++||....
T Consensus 131 ~~~vViDEa 139 (556)
T 4a2p_A 131 FTLMIFDEC 139 (556)
T ss_dssp CSEEEEETG
T ss_pred CCEEEEECC
Confidence 888776443
No 400
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=63.64 E-value=3.7 Score=34.50 Aligned_cols=16 Identities=31% Similarity=0.466 Sum_probs=13.5
Q ss_pred CcEEEEcCCCchHHHH
Q psy9399 39 RDLIVSSQTGSGKTAA 54 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~ 54 (453)
.-+.|.||+|||||..
T Consensus 23 ~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTL 38 (208)
T ss_dssp EEEEEECCTTSCTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3488999999999963
No 401
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=63.54 E-value=4.2 Score=33.09 Aligned_cols=15 Identities=27% Similarity=0.339 Sum_probs=13.2
Q ss_pred cEEEEcCCCchHHHH
Q psy9399 40 DLIVSSQTGSGKTAA 54 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~ 54 (453)
-.+|.||+|+|||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 478999999999974
No 402
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=63.41 E-value=4.2 Score=33.69 Aligned_cols=15 Identities=20% Similarity=0.417 Sum_probs=13.0
Q ss_pred EEEEcCCCchHHHHH
Q psy9399 41 LIVSSQTGSGKTAAF 55 (453)
Q Consensus 41 ~lv~a~TGsGKT~~~ 55 (453)
+++.|++|||||...
T Consensus 3 I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 3 IAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCccCHHHHH
Confidence 789999999999743
No 403
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=63.33 E-value=4.5 Score=33.11 Aligned_cols=15 Identities=33% Similarity=0.698 Sum_probs=12.8
Q ss_pred cEEEEcCCCchHHHH
Q psy9399 40 DLIVSSQTGSGKTAA 54 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~ 54 (453)
.+.+.||.|+|||..
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 368899999999974
No 404
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=63.29 E-value=5.1 Score=29.12 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=32.1
Q ss_pred CCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCC
Q psy9399 267 KRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDL 303 (453)
Q Consensus 267 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 303 (453)
....+++++|.+-..+...+..|...|+++..+.|++
T Consensus 54 ~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 3456899999998889999999999999999999884
No 405
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=63.22 E-value=9.3 Score=29.07 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=31.7
Q ss_pred CCC-CcEEEEe-ccchhHHHHHHHHhhCCCceeecCCCCC
Q psy9399 267 KRV-GQAVVFT-ATKRDADIIADRLNISGFLAAPLHGDLH 304 (453)
Q Consensus 267 ~~~-~~~lvf~-~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 304 (453)
... .+++++| .+-..+..++..|...|+++..+.|++.
T Consensus 86 ~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 86 ALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp HTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred ccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 344 6899999 5777888999999999999999999854
No 406
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=63.21 E-value=4.9 Score=33.99 Aligned_cols=17 Identities=18% Similarity=0.354 Sum_probs=14.4
Q ss_pred CcEEEEcCCCchHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~ 55 (453)
..+++.|++|||||...
T Consensus 5 ~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45899999999999754
No 407
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=63.06 E-value=5.2 Score=33.88 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=14.9
Q ss_pred CcEEEEcCCCchHHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAFM 56 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l 56 (453)
..+++.|++|||||...-
T Consensus 6 ~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCE 23 (222)
T ss_dssp CCEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458999999999998543
No 408
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=63.06 E-value=3.3 Score=33.72 Aligned_cols=18 Identities=28% Similarity=0.481 Sum_probs=14.5
Q ss_pred CCcEEEEcCCCchHHHHH
Q psy9399 38 GRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~ 55 (453)
+..+++.|+.|||||...
T Consensus 5 g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 345889999999999743
No 409
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=63.02 E-value=4.4 Score=33.68 Aligned_cols=16 Identities=19% Similarity=0.393 Sum_probs=13.8
Q ss_pred cEEEEcCCCchHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAF 55 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~ 55 (453)
.+++.|++|||||..+
T Consensus 22 ~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQA 37 (201)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999854
No 410
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=62.88 E-value=3 Score=38.81 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=13.3
Q ss_pred cEEEEcCCCchHHHH
Q psy9399 40 DLIVSSQTGSGKTAA 54 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~ 54 (453)
-.++.|+||+|||..
T Consensus 27 l~vi~G~NGaGKT~i 41 (371)
T 3auy_A 27 IVAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 489999999999974
No 411
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=62.72 E-value=3.8 Score=33.66 Aligned_cols=14 Identities=29% Similarity=0.515 Sum_probs=12.4
Q ss_pred EEEEcCCCchHHHH
Q psy9399 41 LIVSSQTGSGKTAA 54 (453)
Q Consensus 41 ~lv~a~TGsGKT~~ 54 (453)
++|.|++|||||.-
T Consensus 2 ilV~Gg~~SGKS~~ 15 (180)
T 1c9k_A 2 ILVTGGARSGKSRH 15 (180)
T ss_dssp EEEEECTTSSHHHH
T ss_pred EEEECCCCCcHHHH
Confidence 68999999999973
No 412
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=62.52 E-value=3.8 Score=40.84 Aligned_cols=14 Identities=14% Similarity=0.520 Sum_probs=13.5
Q ss_pred cEEEEcCCCchHHH
Q psy9399 40 DLIVSSQTGSGKTA 53 (453)
Q Consensus 40 ~~lv~a~TGsGKT~ 53 (453)
++++.||+|+|||.
T Consensus 329 ~vLL~GppGtGKT~ 342 (595)
T 3f9v_A 329 HILIIGDPGTAKSQ 342 (595)
T ss_dssp CEEEEESSCCTHHH
T ss_pred ceEEECCCchHHHH
Confidence 79999999999997
No 413
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=62.29 E-value=5.9 Score=33.89 Aligned_cols=18 Identities=17% Similarity=0.218 Sum_probs=14.9
Q ss_pred CcEEEEcCCCchHHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAFM 56 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l 56 (453)
..+++.|++|||||...-
T Consensus 17 ~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 459999999999997543
No 414
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=62.25 E-value=4.4 Score=36.72 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=17.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHH
Q psy9399 38 GRDLIVSSQTGSGKTAAFMLPALH 61 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~l~~~~~ 61 (453)
+..+++.||+|+|||..++..+..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 344799999999999865555443
No 415
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=62.25 E-value=3.5 Score=36.11 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=13.8
Q ss_pred cEEEEcCCCchHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAF 55 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~ 55 (453)
-++++|++|||||..+
T Consensus 6 lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4889999999999754
No 416
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=62.14 E-value=14 Score=38.36 Aligned_cols=74 Identities=12% Similarity=0.184 Sum_probs=48.3
Q ss_pred CCcEEEEeccchhHHHHHHHHhhC----CCceeecCCCCCHHHHHHHHHHHhcCCccEEEEe-CCcc----cC-C-CCCC
Q psy9399 269 VGQAVVFTATKRDADIIADRLNIS----GFLAAPLHGDLHQNARNRTLENLRRGRIKILVAT-DVAA----RG-I-DVPA 337 (453)
Q Consensus 269 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T-~~~~----~G-v-di~~ 337 (453)
++++||.++++.-+....+.++.. ++.+..++|+.+...+...+. +..+|+|+| +.+. .+ + .+.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 679999999999888887777653 889999999986554433221 247899999 3332 22 2 4556
Q ss_pred CcEEEEcCC
Q psy9399 338 ITHVFNYDL 346 (453)
Q Consensus 338 ~~~Vi~~~~ 346 (453)
+++||....
T Consensus 372 ~~~iViDEa 380 (797)
T 4a2q_A 372 FTLMIFDEC 380 (797)
T ss_dssp CSEEEETTG
T ss_pred CCEEEEECc
Confidence 778776443
No 417
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=61.98 E-value=4.6 Score=34.22 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=14.1
Q ss_pred CcEEEEcCCCchHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~ 55 (453)
..+.+.||+|||||...
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34889999999999754
No 418
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=61.88 E-value=5.6 Score=32.88 Aligned_cols=41 Identities=17% Similarity=0.241 Sum_probs=24.7
Q ss_pred CCCccEEEEechhhhc--ccCChHHHHHHHhhCCCCccEEEEEeec
Q psy9399 170 FSHLQILVLDEADRML--DMGFINDIEKIVDATPVTRQTMLFSATL 213 (453)
Q Consensus 170 ~~~~~~iIiDE~h~~~--~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 213 (453)
....+++|+||+..+. +..+...+..++.. ...+|+.+.|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeec
Confidence 4678899999976553 33355555555543 23355556664
No 419
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=61.82 E-value=4.9 Score=32.13 Aligned_cols=16 Identities=19% Similarity=0.127 Sum_probs=13.5
Q ss_pred cEEEEcCCCchHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAF 55 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~ 55 (453)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3789999999999754
No 420
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=61.82 E-value=4.7 Score=33.53 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=13.6
Q ss_pred cEEEEcCCCchHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAF 55 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~ 55 (453)
.+++.|+.|||||...
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3889999999999754
No 421
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=61.59 E-value=3 Score=33.97 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=10.4
Q ss_pred CcEEEEcCCCchHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~ 55 (453)
..+++.|+.|||||..+
T Consensus 6 ~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CEEEEECCC----CHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999854
No 422
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=61.51 E-value=79 Score=30.34 Aligned_cols=74 Identities=14% Similarity=0.073 Sum_probs=49.0
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHH----hcCCCCEEEeChHHHHHHHhcCCCCCCCcc
Q psy9399 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQL----LSRNPEILLATPGRLIDHMNSGKINFSHLQ 174 (453)
Q Consensus 99 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~ 174 (453)
..++++..+.-+..+.+.+.+.+ ..+..++|+....+.... ..+..+|+|+|+..+-. .+++.+++
T Consensus 349 ~~~ivf~~~~~~~~l~~~L~~~~-----~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-----GiDip~v~ 418 (510)
T 2oca_A 349 NAFVMFKHVSHGKAIFDLIKNEY-----DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-----GISVKNLH 418 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHTTC-----SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-----SCCCCSEE
T ss_pred CeEEEEecHHHHHHHHHHHHHcC-----CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-----ccccccCc
Confidence 44555555666666666666543 367788888775543322 24567899999777655 34678899
Q ss_pred EEEEechh
Q psy9399 175 ILVLDEAD 182 (453)
Q Consensus 175 ~iIiDE~h 182 (453)
+||+....
T Consensus 419 ~vi~~~~~ 426 (510)
T 2oca_A 419 HVVLAHGV 426 (510)
T ss_dssp EEEESSCC
T ss_pred EEEEeCCC
Confidence 99988776
No 423
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=61.38 E-value=6.5 Score=37.37 Aligned_cols=22 Identities=27% Similarity=0.227 Sum_probs=16.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAFMLPALH 61 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~l~~~~~ 61 (453)
.+++.|++|+|||......+..
T Consensus 101 vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999765444433
No 424
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=61.34 E-value=33 Score=29.22 Aligned_cols=67 Identities=15% Similarity=0.127 Sum_probs=48.3
Q ss_pred EEEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCc-eeecCCCCCHHHHHHHHHHHhcCCccEEE
Q psy9399 246 SILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFL-AAPLHGDLHQNARNRTLENLRRGRIKILV 324 (453)
Q Consensus 246 ~~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~~~r~~~~~~f~~g~~~vLv 324 (453)
.++..+...-|..+...++... +.+++++++++.-+....+.+...+.. +..++|+.. ...+|+|
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~-~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v 176 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL-STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTV 176 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS-CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEE
Confidence 3444455555655554444443 578999999999999999999887777 888888753 2467899
Q ss_pred Ee
Q psy9399 325 AT 326 (453)
Q Consensus 325 ~T 326 (453)
+|
T Consensus 177 ~T 178 (237)
T 2fz4_A 177 ST 178 (237)
T ss_dssp EE
T ss_pred Ee
Confidence 98
No 425
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=61.34 E-value=3.5 Score=33.55 Aligned_cols=16 Identities=31% Similarity=0.364 Sum_probs=13.0
Q ss_pred cEEEEcCCCchHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAF 55 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~ 55 (453)
-+.|.|++|||||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999743
No 426
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=61.21 E-value=3.4 Score=35.61 Aligned_cols=76 Identities=20% Similarity=0.237 Sum_probs=48.8
Q ss_pred CCCcEEEEeccchhHHHHHHHHhhC----CCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeC-Cc----cc---CCCC
Q psy9399 268 RVGQAVVFTATKRDADIIADRLNIS----GFLAAPLHGDLHQNARNRTLENLRRGRIKILVATD-VA----AR---GIDV 335 (453)
Q Consensus 268 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~----~~---Gvdi 335 (453)
.+.+++|.+++++-+..+++.++.. +..+..++|+.... ........+..+|+|+|. .+ .. .+++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAA---KKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHH---TTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHH---HHhhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 3457999999999999988888763 56666666542211 111122345678999993 22 12 4677
Q ss_pred CCCcEEEEcCC
Q psy9399 336 PAITHVFNYDL 346 (453)
Q Consensus 336 ~~~~~Vi~~~~ 346 (453)
.++.+||....
T Consensus 174 ~~~~~lViDEa 184 (245)
T 3dkp_A 174 ASVEWLVVDES 184 (245)
T ss_dssp TTCCEEEESSH
T ss_pred ccCcEEEEeCh
Confidence 78888876443
No 427
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=61.11 E-value=8.8 Score=37.49 Aligned_cols=74 Identities=16% Similarity=0.227 Sum_probs=50.8
Q ss_pred CCcEEEEeccchhHHHHHHHHhhC----CCceeecCCCCCHHHHHHHHHHHhcCCccEEEEe-CCccc----C-C-CCCC
Q psy9399 269 VGQAVVFTATKRDADIIADRLNIS----GFLAAPLHGDLHQNARNRTLENLRRGRIKILVAT-DVAAR----G-I-DVPA 337 (453)
Q Consensus 269 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T-~~~~~----G-v-di~~ 337 (453)
+.++||+++++.-+...++.+... ++.+..++|+.+...+...+. +..+|+|+| +.+.. + + ++..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 678999999999888887777653 888999999986544322221 136899999 33322 2 2 4556
Q ss_pred CcEEEEcCC
Q psy9399 338 ITHVFNYDL 346 (453)
Q Consensus 338 ~~~Vi~~~~ 346 (453)
+++||....
T Consensus 128 ~~~vViDEa 136 (555)
T 3tbk_A 128 FTLMIFDEC 136 (555)
T ss_dssp CSEEEETTG
T ss_pred CCEEEEECc
Confidence 777776443
No 428
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=61.01 E-value=2.9 Score=34.99 Aligned_cols=18 Identities=33% Similarity=0.211 Sum_probs=14.4
Q ss_pred cCCcEEEEcCCCchHHHH
Q psy9399 37 SGRDLIVSSQTGSGKTAA 54 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~ 54 (453)
.+.-+.+.|++|||||..
T Consensus 20 ~~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTL 37 (207)
T ss_dssp CCEEEEEEESTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 334588999999999974
No 429
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=60.99 E-value=3.7 Score=35.42 Aligned_cols=17 Identities=35% Similarity=0.546 Sum_probs=14.8
Q ss_pred cCCcEEEEcCCCchHHH
Q psy9399 37 SGRDLIVSSQTGSGKTA 53 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~ 53 (453)
.|+-+.+.||.|||||.
T Consensus 30 ~Ge~~~i~G~nGsGKST 46 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSS 46 (237)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45668999999999996
No 430
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=60.94 E-value=3.9 Score=33.74 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=13.0
Q ss_pred EEEEcCCCchHHHHH
Q psy9399 41 LIVSSQTGSGKTAAF 55 (453)
Q Consensus 41 ~lv~a~TGsGKT~~~ 55 (453)
+++.|+.|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999754
No 431
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=60.75 E-value=6 Score=33.25 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=13.6
Q ss_pred EEEEcCCCchHHHHHHH
Q psy9399 41 LIVSSQTGSGKTAAFML 57 (453)
Q Consensus 41 ~lv~a~TGsGKT~~~l~ 57 (453)
+++.||+||||+..+-.
T Consensus 3 Iil~GpPGsGKgTqa~~ 19 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKR 19 (206)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68899999999975433
No 432
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=60.66 E-value=8.5 Score=35.03 Aligned_cols=15 Identities=33% Similarity=0.492 Sum_probs=13.2
Q ss_pred cEEEEcCCCchHHHH
Q psy9399 40 DLIVSSQTGSGKTAA 54 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~ 54 (453)
-+.+.||+|+|||..
T Consensus 131 vi~lvG~nGaGKTTl 145 (328)
T 3e70_C 131 VIMFVGFNGSGKTTT 145 (328)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 488999999999974
No 433
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=60.52 E-value=32 Score=35.75 Aligned_cols=77 Identities=9% Similarity=0.005 Sum_probs=54.3
Q ss_pred HHHHhhCCCCcEEEEeccchhHHHHHHHHhh----CCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeC-Cc-----c
Q psy9399 261 DYLLRDKRVGQAVVFTATKRDADIIADRLNI----SGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATD-VA-----A 330 (453)
Q Consensus 261 ~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~-----~ 330 (453)
..++....+.+++|.++++.-|.+.++.+.. .|+.+..+.|+++..+|.... ..+|+++|. -+ .
T Consensus 144 P~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLr 217 (922)
T 1nkt_A 144 PAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLR 217 (922)
T ss_dssp HHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHH
T ss_pred HHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHH
Confidence 3334444567899999999988887777654 589999999999987665443 268999994 22 1
Q ss_pred c-------CCCCCCCcEEEE
Q psy9399 331 R-------GIDVPAITHVFN 343 (453)
Q Consensus 331 ~-------Gvdi~~~~~Vi~ 343 (453)
. .++...+.++|.
T Consensus 218 D~m~~~~~~l~lr~l~~lIV 237 (922)
T 1nkt_A 218 DNMAHSLDDLVQRGHHYAIV 237 (922)
T ss_dssp HTTCSSGGGCCCCCCCEEEE
T ss_pred hhhhccHhhhccCCCCEEEE
Confidence 2 355566777664
No 434
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=60.40 E-value=6.3 Score=28.82 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=31.6
Q ss_pred CCCCcEEEEeccchhHHHHHHHHhhCCCceeecCCCC
Q psy9399 267 KRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDL 303 (453)
Q Consensus 267 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 303 (453)
....+++++|.+-..+...+..|...|+.+..+.|++
T Consensus 54 ~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred cCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 3456899999998888999999999999888888874
No 435
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=60.40 E-value=5.2 Score=33.37 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCchHHHHH
Q psy9399 38 GRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~ 55 (453)
+.-+++.|+.|||||...
T Consensus 4 ~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 345889999999999754
No 436
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=60.39 E-value=4.5 Score=33.91 Aligned_cols=16 Identities=31% Similarity=0.266 Sum_probs=13.5
Q ss_pred CcEEEEcCCCchHHHH
Q psy9399 39 RDLIVSSQTGSGKTAA 54 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~ 54 (453)
.-+.+.||+|||||..
T Consensus 7 ~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 7 FVIGIAGGTASGKTTL 22 (211)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 3478999999999974
No 437
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=60.28 E-value=8.5 Score=35.51 Aligned_cols=16 Identities=25% Similarity=0.561 Sum_probs=13.5
Q ss_pred cEEEEcCCCchHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAF 55 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~ 55 (453)
-+.+.||+|+|||...
T Consensus 159 vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCChHHHHH
Confidence 3789999999999743
No 438
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=60.22 E-value=22 Score=36.63 Aligned_cols=76 Identities=9% Similarity=0.149 Sum_probs=52.5
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhc------ccCCeeEEEEECCCchHHHHHHhcC---------CCCEEEeChHHHHH
Q psy9399 97 QPRMLVLTPTRELALQVTAATERYGL------YMKKIKAISILGGMPYLRQMQLLSR---------NPEILLATPGRLID 161 (453)
Q Consensus 97 ~~~~lil~P~~~L~~q~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~Ilv~T~~~l~~ 161 (453)
.+++||.+|++.-+..+.+.+.+... ....+.+..++|+....++...... ...|+|+|.-
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~i---- 378 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNI---- 378 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTH----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcH----
Confidence 56999999999999999888875321 1245888899999887666544432 3479999942
Q ss_pred HHhcCCCCCCCccEEEE
Q psy9399 162 HMNSGKINFSHLQILVL 178 (453)
Q Consensus 162 ~l~~~~~~~~~~~~iIi 178 (453)
+.. .+++..+.+||-
T Consensus 379 -ae~-GidIp~v~~VId 393 (773)
T 2xau_A 379 -AET-SLTIDGIVYVVD 393 (773)
T ss_dssp -HHH-TCCCTTEEEEEE
T ss_pred -HHh-CcCcCCeEEEEe
Confidence 222 335677777664
No 439
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=60.18 E-value=14 Score=37.00 Aligned_cols=69 Identities=10% Similarity=0.093 Sum_probs=47.7
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeChHHHHHHHhcCCCCCCCccEE
Q psy9399 97 QPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176 (453)
Q Consensus 97 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~i 176 (453)
..++||.|+++.-++.+++.+...+ +++..+++...............+|+|+|. .+.. .+++. +++|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~g-----~~v~~lhg~~R~~~l~~F~~g~~~VLVaTd-----v~~r-GiDi~-v~~V 422 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKSG-----KRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----ISEM-GANFR-AGRV 422 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHTT-----CCEEEECTTTHHHHTTHHHHSCCSEEEECG-----GGGT-TCCCC-CSEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHcC-----CcEEEEChHHHHHHHHhhcCCCcEEEEECc-----HHHc-CcccC-ceEE
Confidence 4589999999999999999988763 677788876443333333345779999994 2332 33454 6666
Q ss_pred E
Q psy9399 177 V 177 (453)
Q Consensus 177 I 177 (453)
|
T Consensus 423 I 423 (618)
T 2whx_A 423 I 423 (618)
T ss_dssp E
T ss_pred E
Confidence 4
No 440
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=60.05 E-value=1.5 Score=45.52 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCchHHHHH
Q psy9399 37 SGRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~~ 55 (453)
.++.+++.||+|+|||..+
T Consensus 510 ~~~~vLL~GppGtGKT~La 528 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHH
T ss_pred CCceeEEECCCCCCHHHHH
Confidence 3456999999999999843
No 441
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=59.80 E-value=5.3 Score=33.32 Aligned_cols=15 Identities=33% Similarity=0.401 Sum_probs=13.0
Q ss_pred EEEEcCCCchHHHHH
Q psy9399 41 LIVSSQTGSGKTAAF 55 (453)
Q Consensus 41 ~lv~a~TGsGKT~~~ 55 (453)
+.+.|+.|||||.+.
T Consensus 5 i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999753
No 442
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=59.80 E-value=4.2 Score=34.46 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=23.0
Q ss_pred CCCccEEEEechhhhcccCChHHHHHHHhhC
Q psy9399 170 FSHLQILVLDEADRMLDMGFINDIEKIVDAT 200 (453)
Q Consensus 170 ~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~ 200 (453)
..+.+++++||--.-+|......+..++..+
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~ 179 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEI 179 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHH
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 4667899999999888877666666665544
No 443
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=59.51 E-value=5 Score=33.79 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=13.5
Q ss_pred cEEEEcCCCchHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAF 55 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~ 55 (453)
.+++.|++|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999754
No 444
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=59.47 E-value=5.4 Score=32.68 Aligned_cols=15 Identities=33% Similarity=0.446 Sum_probs=13.0
Q ss_pred EEEEcCCCchHHHHH
Q psy9399 41 LIVSSQTGSGKTAAF 55 (453)
Q Consensus 41 ~lv~a~TGsGKT~~~ 55 (453)
+++.|+.|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999754
No 445
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=59.38 E-value=5.1 Score=32.64 Aligned_cols=24 Identities=8% Similarity=0.142 Sum_probs=18.3
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHH
Q psy9399 37 SGRDLIVSSQTGSGKTAAFMLPAL 60 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~~l~~~~ 60 (453)
.+..+++.|+.|+|||..++..+.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 345699999999999976555443
No 446
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=59.17 E-value=5.4 Score=39.25 Aligned_cols=18 Identities=33% Similarity=0.436 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCchHHHHH
Q psy9399 38 GRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~ 55 (453)
+..+++.||+|+|||..+
T Consensus 108 g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp SCEEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 456999999999999743
No 447
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=59.13 E-value=6.7 Score=33.86 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=14.7
Q ss_pred CcEEEEcCCCchHHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAFM 56 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l 56 (453)
..+++.||.|||||...-
T Consensus 30 ~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 348999999999998543
No 448
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=59.05 E-value=12 Score=42.02 Aligned_cols=27 Identities=22% Similarity=0.163 Sum_probs=21.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhhh
Q psy9399 38 GRDLIVSSQTGSGKTAAFMLPALHKFA 64 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~l~~~~~~l~ 64 (453)
+..+++.||+|+|||..++..+...+.
T Consensus 34 G~i~lI~G~pGsGKT~LAlqla~~~~~ 60 (1706)
T 3cmw_A 34 GRIVEIYGPESSGKTTLTLQVIAAAQR 60 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 467999999999999876666655543
No 449
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=58.95 E-value=14 Score=30.01 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=16.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhh
Q psy9399 40 DLIVSSQTGSGKTAAFMLPALHKF 63 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~l~~~~~~l 63 (453)
-+.+.|+.|+|||.. +..++..+
T Consensus 8 ~i~i~G~sGsGKTTl-~~~l~~~l 30 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL-LKKLIPAL 30 (174)
T ss_dssp EEEEECCTTSCHHHH-HHHHHHHH
T ss_pred EEEEEeCCCCCHHHH-HHHHHHhc
Confidence 478999999999973 33344433
No 450
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=58.92 E-value=8.6 Score=34.41 Aligned_cols=20 Identities=25% Similarity=0.267 Sum_probs=14.9
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAFMLPA 59 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~l~~~ 59 (453)
-+.+.+++|+|||......+
T Consensus 100 vi~i~G~~G~GKTT~~~~la 119 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLA 119 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36778999999997554433
No 451
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=58.85 E-value=6.8 Score=33.24 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=14.6
Q ss_pred CcEEEEcCCCchHHHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAFML 57 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~ 57 (453)
+-+++.||+||||+..+-.
T Consensus 30 kiI~llGpPGsGKgTqa~~ 48 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEK 48 (217)
T ss_dssp EEEEEECCTTCCHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4478899999999975433
No 452
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=58.71 E-value=5.4 Score=33.18 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=13.4
Q ss_pred cEEEEcCCCchHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAF 55 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~ 55 (453)
.+.+.|++|||||...
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3789999999999743
No 453
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=58.67 E-value=4.2 Score=36.04 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=14.7
Q ss_pred cCCcEEEEcCCCchHHH
Q psy9399 37 SGRDLIVSSQTGSGKTA 53 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~ 53 (453)
.|.-+.+.||.|||||.
T Consensus 33 ~Ge~~~iiGpnGsGKST 49 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKST 49 (275)
T ss_dssp TTSEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45668999999999997
No 454
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=58.56 E-value=7.9 Score=27.51 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=30.7
Q ss_pred CcEEEEeccchhHHHHHHHHhhCCCceeecCCCCC
Q psy9399 270 GQAVVFTATKRDADIIADRLNISGFLAAPLHGDLH 304 (453)
Q Consensus 270 ~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 304 (453)
.+++++|.+-..+...+..|...|+.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999988899999999999988888888853
No 455
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=58.56 E-value=4.4 Score=36.49 Aligned_cols=17 Identities=29% Similarity=0.663 Sum_probs=14.7
Q ss_pred cCCcEEEEcCCCchHHH
Q psy9399 37 SGRDLIVSSQTGSGKTA 53 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~ 53 (453)
.|+-+.+.||+|+|||.
T Consensus 79 ~Ge~vaivG~sGsGKST 95 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKST 95 (306)
T ss_dssp TTCEEEEESSSCHHHHH
T ss_pred CCCEEEEECCCCchHHH
Confidence 45668999999999997
No 456
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=58.48 E-value=8.2 Score=39.76 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCchHHHHHH
Q psy9399 38 GRDLIVSSQTGSGKTAAFM 56 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~l 56 (453)
..++++.||+|+|||.++-
T Consensus 201 ~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 3579999999999998543
No 457
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=58.47 E-value=12 Score=32.62 Aligned_cols=52 Identities=13% Similarity=0.095 Sum_probs=31.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhhhhcCCcchhhhhccccccccchhhhhhcccCCCCceEEEEcCcHHHHHHHHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATE 118 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 118 (453)
..+++.+.+|+|||...+..+.+.+.+ +.+++|+.-. +-..++.+.++
T Consensus 22 s~~li~g~p~~~~~~l~~qfl~~g~~~-------------------------------Ge~~~~~~~~-e~~~~l~~~~~ 69 (260)
T 3bs4_A 22 LILIHEEDASSRGKDILFYILSRKLKS-------------------------------DNLVGMFSIS-YPLQLIIRILS 69 (260)
T ss_dssp EEEEEECSGGGCHHHHHHHHHHHHHHT-------------------------------TCEEEEEECS-SCHHHHHHHHH
T ss_pred cEEEEEeCCCccHHHHHHHHHHHHHHC-------------------------------CCcEEEEEEe-CCHHHHHHHHH
Confidence 347888788888885445555555443 4467776553 44456666666
Q ss_pred HHhc
Q psy9399 119 RYGL 122 (453)
Q Consensus 119 ~~~~ 122 (453)
.++.
T Consensus 70 ~~G~ 73 (260)
T 3bs4_A 70 RFGV 73 (260)
T ss_dssp HTTC
T ss_pred HcCC
Confidence 6653
No 458
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=58.46 E-value=6.2 Score=46.50 Aligned_cols=21 Identities=38% Similarity=0.510 Sum_probs=17.5
Q ss_pred HhcCCcEEEEcCCCchHHHHH
Q psy9399 35 AISGRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 35 ~~~~~~~lv~a~TGsGKT~~~ 55 (453)
+..+++++++||||+|||..+
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHH
Confidence 346688999999999999754
No 459
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=58.41 E-value=5.9 Score=33.05 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCchHHHHH
Q psy9399 38 GRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~ 55 (453)
+.-+++.|+.|||||...
T Consensus 10 ~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp SCEEEEEESTTSSHHHHH
T ss_pred CCEEEEEcCCCCCHHHHH
Confidence 455899999999999854
No 460
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=58.39 E-value=4.4 Score=34.74 Aligned_cols=17 Identities=47% Similarity=0.702 Sum_probs=14.8
Q ss_pred cCCcEEEEcCCCchHHH
Q psy9399 37 SGRDLIVSSQTGSGKTA 53 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~ 53 (453)
.|+-+.+.||.|+|||.
T Consensus 33 ~Ge~~~i~G~nGsGKST 49 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTS 49 (229)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 55668999999999996
No 461
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=58.38 E-value=5.8 Score=33.69 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=13.1
Q ss_pred EEEEcCCCchHHHHH
Q psy9399 41 LIVSSQTGSGKTAAF 55 (453)
Q Consensus 41 ~lv~a~TGsGKT~~~ 55 (453)
+++.|++|||||...
T Consensus 3 I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 789999999999754
No 462
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=58.34 E-value=30 Score=36.05 Aligned_cols=62 Identities=15% Similarity=0.062 Sum_probs=46.9
Q ss_pred HHHHHhhCCCCcEEEEeccchhHHHHHHHHhh----CCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeC
Q psy9399 260 LDYLLRDKRVGQAVVFTATKRDADIIADRLNI----SGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATD 327 (453)
Q Consensus 260 ~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 327 (453)
+..++....+.+++|.++|..-|...++.+.. .|+.+..+.|+++..+|.... ..+|+++|.
T Consensus 111 Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 111 LAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp HHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred HHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 33434445567899999999988877776653 689999999999977666554 379999994
No 463
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=58.14 E-value=6.5 Score=34.17 Aligned_cols=18 Identities=22% Similarity=0.363 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCchHHHHH
Q psy9399 38 GRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~ 55 (453)
+..+.|.||+|||||.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLC 44 (252)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 445899999999999743
No 464
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=58.04 E-value=4.4 Score=35.24 Aligned_cols=17 Identities=29% Similarity=0.565 Sum_probs=14.8
Q ss_pred cCCcEEEEcCCCchHHH
Q psy9399 37 SGRDLIVSSQTGSGKTA 53 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~ 53 (453)
.|+-+.+.||.|||||.
T Consensus 34 ~Ge~~~i~G~nGsGKST 50 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKST 50 (247)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 55668999999999997
No 465
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=57.98 E-value=5.5 Score=32.94 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=13.6
Q ss_pred cEEEEcCCCchHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAF 55 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~ 55 (453)
.+.|.|++|||||.+.
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3889999999999854
No 466
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=57.69 E-value=7.4 Score=32.54 Aligned_cols=15 Identities=33% Similarity=0.466 Sum_probs=13.2
Q ss_pred cEEEEcCCCchHHHH
Q psy9399 40 DLIVSSQTGSGKTAA 54 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~ 54 (453)
-.+|.||+|+|||.+
T Consensus 25 ~~~I~G~NgsGKSti 39 (203)
T 3qks_A 25 INLIIGQNGSGKSSL 39 (203)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEEcCCCCCHHHH
Confidence 488999999999974
No 467
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=57.67 E-value=4.6 Score=35.44 Aligned_cols=17 Identities=41% Similarity=0.626 Sum_probs=14.9
Q ss_pred cCCcEEEEcCCCchHHH
Q psy9399 37 SGRDLIVSSQTGSGKTA 53 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~ 53 (453)
.|+-+.+.||.|+|||.
T Consensus 45 ~Ge~~~i~G~nGsGKST 61 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKST 61 (260)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 55668999999999997
No 468
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=57.32 E-value=6.5 Score=32.87 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCchHHHHH
Q psy9399 38 GRDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 38 ~~~~lv~a~TGsGKT~~~ 55 (453)
+.-+++.|+.|||||...
T Consensus 9 ~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCEEEEEESTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 455899999999999754
No 469
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=57.20 E-value=6.2 Score=34.06 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=14.0
Q ss_pred CcEEEEcCCCchHHHH
Q psy9399 39 RDLIVSSQTGSGKTAA 54 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~ 54 (453)
..+++.||.|||||..
T Consensus 28 ~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTV 43 (246)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 4699999999999974
No 470
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=57.19 E-value=8.7 Score=43.83 Aligned_cols=29 Identities=21% Similarity=0.138 Sum_probs=22.6
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHhhhh
Q psy9399 37 SGRDLIVSSQTGSGKTAAFMLPALHKFAS 65 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~~l~~~~~~l~~ 65 (453)
.+.++++.+|+|+|||..++..+.+.+..
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~ 1108 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQRE 1108 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45779999999999998776666665443
No 471
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=57.02 E-value=4.7 Score=35.52 Aligned_cols=17 Identities=29% Similarity=0.565 Sum_probs=14.7
Q ss_pred cCCcEEEEcCCCchHHH
Q psy9399 37 SGRDLIVSSQTGSGKTA 53 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~ 53 (453)
.|+-+.+.||.|||||.
T Consensus 36 ~Ge~~~liG~nGsGKST 52 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKST 52 (266)
T ss_dssp TTCEEEEECCTTSCHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 45668999999999997
No 472
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=56.97 E-value=20 Score=32.32 Aligned_cols=53 Identities=13% Similarity=0.114 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHhCCCCCCc------HHHHHHHHHHhc----------------CCcEEEEcCCCchHHHHHHHHH
Q psy9399 7 GLHELVLKALVKVGYTKPT------GVQEQAIPAAIS----------------GRDLIVSSQTGSGKTAAFMLPA 59 (453)
Q Consensus 7 ~l~~~~~~~l~~~~~~~~~------~~Q~~~~~~~~~----------------~~~~lv~a~TGsGKT~~~l~~~ 59 (453)
..++++++..++.+++-++ ..-..+...+.. |..+++.|+.|+|||..++..+
T Consensus 91 ~~peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~a~~l~ 165 (314)
T 1ko7_A 91 EPPEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSETALELI 165 (314)
T ss_dssp CCCHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHHHHHHH
Confidence 3578888888888887331 111122222222 5679999999999987554443
No 473
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=56.94 E-value=5.7 Score=31.74 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=14.3
Q ss_pred cCCcEEEEcCCCchHHH
Q psy9399 37 SGRDLIVSSQTGSGKTA 53 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~ 53 (453)
.|.-+.+.||.|+|||.
T Consensus 32 ~Ge~v~L~G~nGaGKTT 48 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTT 48 (158)
T ss_dssp SCEEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 44558899999999996
No 474
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=56.79 E-value=9 Score=36.72 Aligned_cols=55 Identities=9% Similarity=0.087 Sum_probs=39.5
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcccCCeeEEEEECCCchHHHHHHhcCCCCEEEeCh
Q psy9399 97 QPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATP 156 (453)
Q Consensus 97 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~ 156 (453)
+.++||.||++.-++.+++.+...+ +.+..+++............+..+|+|+|.
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g-----~~v~~lh~~~R~~~~~~f~~g~~~iLVaT~ 244 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAG-----KKVIQLNRKSYDTEYPKCKNGDWDFVITTD 244 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTT-----CCEEEESTTCCCCCGGGSSSCCCSEEEESS
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcC-----CcEEecCHHHHHHHHhhccCCCceEEEECC
Confidence 4689999999999999999888763 677777775443222222234678999993
No 475
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=56.72 E-value=8.8 Score=36.04 Aligned_cols=23 Identities=13% Similarity=-0.005 Sum_probs=17.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAFMLPALH 61 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~l~~~~~ 61 (453)
.-+.|.||+|+|||......++.
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHH
Confidence 45899999999999855433333
No 476
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=56.69 E-value=8 Score=32.60 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=14.2
Q ss_pred CcEEEEcCCCchHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~ 55 (453)
..+++.|++|||||...
T Consensus 6 ~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35889999999999754
No 477
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=56.68 E-value=5.1 Score=34.88 Aligned_cols=16 Identities=31% Similarity=0.663 Sum_probs=13.7
Q ss_pred cEEEEcCCCchHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAF 55 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~ 55 (453)
.+++.|++|||||..+
T Consensus 34 ~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIH 49 (253)
T ss_dssp EEEEESCGGGTTHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3889999999999744
No 478
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=56.67 E-value=27 Score=32.45 Aligned_cols=76 Identities=20% Similarity=0.158 Sum_probs=52.9
Q ss_pred CCCcEEEEeccchhHHHHHHHHhh----CCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeC-C----cc-cCCCCCC
Q psy9399 268 RVGQAVVFTATKRDADIIADRLNI----SGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATD-V----AA-RGIDVPA 337 (453)
Q Consensus 268 ~~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~----~~-~Gvdi~~ 337 (453)
.+.+++|.++++.-+..+++.++. .+..+..++|+..... ..+.+..+..+|+|+|. . +. ..++...
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRA---EVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHH---HHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHH---HHHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 567899999999999888888865 3567777777765433 34456667889999993 2 22 2345666
Q ss_pred CcEEEEcCC
Q psy9399 338 ITHVFNYDL 346 (453)
Q Consensus 338 ~~~Vi~~~~ 346 (453)
+++||....
T Consensus 184 ~~~vViDEa 192 (414)
T 3eiq_A 184 IKMFVLDEA 192 (414)
T ss_dssp CCEEEECSH
T ss_pred CcEEEEECH
Confidence 777776443
No 479
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=56.46 E-value=4.5 Score=34.52 Aligned_cols=17 Identities=29% Similarity=0.517 Sum_probs=14.6
Q ss_pred cCCcEEEEcCCCchHHH
Q psy9399 37 SGRDLIVSSQTGSGKTA 53 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~ 53 (453)
.|+-+.+.||.|+|||.
T Consensus 29 ~Ge~~~iiG~nGsGKST 45 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKST 45 (224)
T ss_dssp TTCEEEEEECTTSCHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45668899999999996
No 480
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=56.00 E-value=5.3 Score=33.71 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=13.6
Q ss_pred cEEEEcCCCchHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAF 55 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~ 55 (453)
.+.+.|+.|||||.+.
T Consensus 6 ~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 6 IVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999743
No 481
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=56.00 E-value=4.9 Score=35.13 Aligned_cols=17 Identities=29% Similarity=0.544 Sum_probs=14.7
Q ss_pred cCCcEEEEcCCCchHHH
Q psy9399 37 SGRDLIVSSQTGSGKTA 53 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~ 53 (453)
.|+-+.+.||.|+|||.
T Consensus 32 ~Ge~~~liG~nGsGKST 48 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKST 48 (257)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45668899999999997
No 482
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=55.92 E-value=5 Score=34.67 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=14.7
Q ss_pred cCCcEEEEcCCCchHHH
Q psy9399 37 SGRDLIVSSQTGSGKTA 53 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~ 53 (453)
.|.-+.+.||.|+|||.
T Consensus 31 ~Ge~~~l~G~nGsGKST 47 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTT 47 (240)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45668899999999997
No 483
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=55.75 E-value=9.4 Score=27.88 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=31.4
Q ss_pred CCCCcEEEEeccchhHHHHHHHHhhCCCc-eeecCCCC
Q psy9399 267 KRVGQAVVFTATKRDADIIADRLNISGFL-AAPLHGDL 303 (453)
Q Consensus 267 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~ 303 (453)
....+++++|.+-..+..++..|...|+. +..+.|++
T Consensus 50 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~ 87 (106)
T 3hix_A 50 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 87 (106)
T ss_dssp CTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHH
T ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCH
Confidence 34568999999988899999999999984 88899884
No 484
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=55.72 E-value=5.2 Score=35.10 Aligned_cols=17 Identities=29% Similarity=0.581 Sum_probs=14.6
Q ss_pred cCCcEEEEcCCCchHHH
Q psy9399 37 SGRDLIVSSQTGSGKTA 53 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~ 53 (453)
.|+-+.+.||.|+|||.
T Consensus 31 ~Ge~~~liG~nGsGKST 47 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKST 47 (262)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45568899999999996
No 485
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=55.57 E-value=4.4 Score=35.08 Aligned_cols=30 Identities=33% Similarity=0.389 Sum_probs=19.7
Q ss_pred CCccEEEEechhhhcccCChHHHHHHHhhC
Q psy9399 171 SHLQILVLDEADRMLDMGFINDIEKIVDAT 200 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~ 200 (453)
.+.+++++||--.-+|......+..++..+
T Consensus 156 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~ 185 (243)
T 1mv5_A 156 RNPKILMLDEATASLDSESESMVQKALDSL 185 (243)
T ss_dssp HCCSEEEEECCSCSSCSSSCCHHHHHHHHH
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHh
Confidence 345789999988777766555555554443
No 486
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=55.06 E-value=46 Score=29.62 Aligned_cols=72 Identities=21% Similarity=0.177 Sum_probs=50.6
Q ss_pred CCcEEEEeccchhHHHHHHHHhh----CCCceeecCCCCCHHHHHHHHHHHhcCCccEEEEeC-Ccc-----cCCCCCCC
Q psy9399 269 VGQAVVFTATKRDADIIADRLNI----SGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATD-VAA-----RGIDVPAI 338 (453)
Q Consensus 269 ~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~~-----~Gvdi~~~ 338 (453)
+.+++|.++++.-+...++.++. .+..+..++|+.+..+.... +. ..+|+|+|. .+. ..+++..+
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 57899999999999988888874 35778889999877654332 32 378999993 221 23455667
Q ss_pred cEEEEcC
Q psy9399 339 THVFNYD 345 (453)
Q Consensus 339 ~~Vi~~~ 345 (453)
++||...
T Consensus 131 ~~iViDE 137 (337)
T 2z0m_A 131 EIVIIDE 137 (337)
T ss_dssp SEEEEES
T ss_pred cEEEEEC
Confidence 7777544
No 487
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=55.03 E-value=8.9 Score=31.98 Aligned_cols=41 Identities=10% Similarity=0.091 Sum_probs=22.3
Q ss_pred CccEEEEechhhhcccC--Ch---HHHHHHHhhCCCCccEEEEEee
Q psy9399 172 HLQILVLDEADRMLDMG--FI---NDIEKIVDATPVTRQTMLFSAT 212 (453)
Q Consensus 172 ~~~~iIiDE~h~~~~~~--~~---~~~~~~~~~~~~~~~~i~~SAT 212 (453)
+-.+|||||||.+.... .. ..+..+........++|+++-.
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred CceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
Confidence 36799999999984321 11 2222222222334467777666
No 488
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=54.96 E-value=6.7 Score=38.08 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=14.4
Q ss_pred CcEEEEcCCCchHHHHH
Q psy9399 39 RDLIVSSQTGSGKTAAF 55 (453)
Q Consensus 39 ~~~lv~a~TGsGKT~~~ 55 (453)
+.+++.||+|+|||+.+
T Consensus 65 ~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45999999999999743
No 489
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=54.95 E-value=5.5 Score=34.82 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=20.3
Q ss_pred CCCccEEEEechhhhcccCChHHHHHHHhhC
Q psy9399 170 FSHLQILVLDEADRMLDMGFINDIEKIVDAT 200 (453)
Q Consensus 170 ~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~ 200 (453)
..+.+++++||--.-+|......+..++..+
T Consensus 162 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l 192 (256)
T 1vpl_A 162 MVNPRLAILDEPTSGLDVLNAREVRKILKQA 192 (256)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCccccCHHHHHHHHHHHHHH
Confidence 4567789999988777765555555554443
No 490
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=54.87 E-value=28 Score=33.19 Aligned_cols=85 Identities=14% Similarity=0.119 Sum_probs=56.9
Q ss_pred EEEEcchhhHHHHHHHHHhhCCCCcEEEEeccchhHHHHHHHHhhCCCc-eeecCCCCCHHHHHHHHHHHhcCCccEEEE
Q psy9399 247 ILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFL-AAPLHGDLHQNARNRTLENLRRGRIKILVA 325 (453)
Q Consensus 247 ~~~~~~~~~~~~~~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~ 325 (453)
++..+...-|.......+... +.++||+|+++.-+...++.+...+.. +..+||+... ..+|+|+
T Consensus 112 ll~~~TGsGKT~~~l~~i~~~-~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-------------~~~Ivv~ 177 (472)
T 2fwr_A 112 CIVLPTGSGKTHVAMAAINEL-STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPLTVS 177 (472)
T ss_dssp EEECCTTSCHHHHHHHHHHHH-CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC-------------CCSEEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHc-CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC-------------cCCEEEE
Confidence 344444555544433333332 579999999999999999999988888 9999998642 4689999
Q ss_pred e-CCcccCCC-C-CCCcEEEEcC
Q psy9399 326 T-DVAARGID-V-PAITHVFNYD 345 (453)
Q Consensus 326 T-~~~~~Gvd-i-~~~~~Vi~~~ 345 (453)
| +.+...++ + ..+++||...
T Consensus 178 T~~~l~~~~~~~~~~~~liIvDE 200 (472)
T 2fwr_A 178 TYDSAYVNAEKLGNRFMLLIFDE 200 (472)
T ss_dssp EHHHHHHTHHHHTTTCSEEEEET
T ss_pred EcHHHHHHHHHhcCCCCEEEEEC
Confidence 9 44433332 1 2467776544
No 491
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=54.84 E-value=5.4 Score=36.49 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=13.6
Q ss_pred cEEEEcCCCchHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAF 55 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~ 55 (453)
-.++.||+|+|||...
T Consensus 25 ~~~i~G~NGsGKS~ll 40 (339)
T 3qkt_A 25 INLIIGQNGSGKSSLL 40 (339)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3789999999999854
No 492
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=54.78 E-value=12 Score=36.18 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=13.4
Q ss_pred cEEEEcCCCchHHHHH
Q psy9399 40 DLIVSSQTGSGKTAAF 55 (453)
Q Consensus 40 ~~lv~a~TGsGKT~~~ 55 (453)
-+.+.|++|+|||...
T Consensus 295 VI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCcccHHHHH
Confidence 3789999999999743
No 493
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=54.59 E-value=5.5 Score=34.65 Aligned_cols=17 Identities=29% Similarity=0.534 Sum_probs=14.8
Q ss_pred cCCcEEEEcCCCchHHH
Q psy9399 37 SGRDLIVSSQTGSGKTA 53 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~ 53 (453)
.|+-+.+.||.|+|||.
T Consensus 25 ~Ge~~~liG~NGsGKST 41 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKST 41 (249)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 45668899999999997
No 494
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=54.53 E-value=7.6 Score=32.19 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=13.5
Q ss_pred EEEEcCCCchHHHHHH
Q psy9399 41 LIVSSQTGSGKTAAFM 56 (453)
Q Consensus 41 ~lv~a~TGsGKT~~~l 56 (453)
+.+.|++|||||.+.-
T Consensus 15 IgltG~~GSGKSTva~ 30 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCE 30 (192)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7889999999998543
No 495
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=54.47 E-value=2.4 Score=43.20 Aligned_cols=74 Identities=11% Similarity=0.188 Sum_probs=48.2
Q ss_pred CCcEEEEeccchhHHHH-HHHHhhC---CCceeecCCCCCHHHHHHHHHHHhcCCccEEEEe-CCccc-----------C
Q psy9399 269 VGQAVVFTATKRDADII-ADRLNIS---GFLAAPLHGDLHQNARNRTLENLRRGRIKILVAT-DVAAR-----------G 332 (453)
Q Consensus 269 ~~~~lvf~~~~~~~~~l-~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T-~~~~~-----------G 332 (453)
++++||.++++.-+... .+.++.. ++.+..++|+.+..++...+. +..+|+|+| +.+.. .
T Consensus 56 ~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~ 131 (699)
T 4gl2_A 56 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAG 131 (699)
T ss_dssp CCCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------C
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccc
Confidence 37899999999988888 7777764 278999999976544333222 467899999 44432 2
Q ss_pred CCCCCCcEEEEcCC
Q psy9399 333 IDVPAITHVFNYDL 346 (453)
Q Consensus 333 vdi~~~~~Vi~~~~ 346 (453)
+.+..+++||....
T Consensus 132 ~~~~~~~lvViDEa 145 (699)
T 4gl2_A 132 VQLSDFSLIIIDEC 145 (699)
T ss_dssp CCGGGCSEEEEESG
T ss_pred eecccCcEEEEECc
Confidence 45567788776443
No 496
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=54.34 E-value=7.2 Score=34.29 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=20.9
Q ss_pred CCccEEEEechhhhcccCChHHHHHHHhhCC
Q psy9399 171 SHLQILVLDEADRMLDMGFINDIEKIVDATP 201 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~ 201 (453)
.+.+++++||--.-+|......+..++..+.
T Consensus 181 ~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~ 211 (267)
T 2zu0_C 181 LEPELCILDESDSGLDIDALKVVADGVNSLR 211 (267)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHTTC
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 4456888888887777666666666666554
No 497
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=54.30 E-value=11 Score=36.93 Aligned_cols=21 Identities=24% Similarity=0.329 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q psy9399 37 SGRDLIVSSQTGSGKTAAFML 57 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~~~l~ 57 (453)
.|.-++|.||+|+|||.....
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~ 300 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSR 300 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHH
Confidence 445689999999999974433
No 498
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=54.23 E-value=5.6 Score=34.69 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=19.4
Q ss_pred CCccEEEEechhhhcccCChHHHHHHHhhC
Q psy9399 171 SHLQILVLDEADRMLDMGFINDIEKIVDAT 200 (453)
Q Consensus 171 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~ 200 (453)
.+.+++++||--.-+|......+..++..+
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l 174 (253)
T 2nq2_C 145 SECKLILLDEPTSALDLANQDIVLSLLIDL 174 (253)
T ss_dssp TTCSEEEESSSSTTSCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 456788888888777665555555554443
No 499
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=54.18 E-value=7.4 Score=34.73 Aligned_cols=15 Identities=33% Similarity=0.488 Sum_probs=13.0
Q ss_pred EEEEcCCCchHHHHH
Q psy9399 41 LIVSSQTGSGKTAAF 55 (453)
Q Consensus 41 ~lv~a~TGsGKT~~~ 55 (453)
+.|.|++|||||..+
T Consensus 34 i~I~G~sGsGKSTla 48 (290)
T 1odf_A 34 IFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999743
No 500
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=54.13 E-value=5.8 Score=34.85 Aligned_cols=17 Identities=35% Similarity=0.651 Sum_probs=14.5
Q ss_pred cCCcEEEEcCCCchHHH
Q psy9399 37 SGRDLIVSSQTGSGKTA 53 (453)
Q Consensus 37 ~~~~~lv~a~TGsGKT~ 53 (453)
.|+-+.+.||.|+|||.
T Consensus 49 ~Gei~~liG~NGsGKST 65 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKST 65 (263)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEEcCCCCcHHH
Confidence 45568899999999997
Done!