Your job contains 1 sequence.
>psy9399
MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL
HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY
GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE
ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ
KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH
GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT
GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRYRFNNNNW
KTHNINKSNITKRFYRQIKKTSISASSKNSINY
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy9399
(453 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TIGR_CMR|GSU_0491 - symbol:GSU_0491 "ATP-dependent RNA he... 804 3.0e-95 2
UNIPROTKB|Q48PB7 - symbol:PSPPH_0449 "ATP-dependent RNA h... 651 5.1e-81 2
UNIPROTKB|Q4K4H4 - symbol:rhlE_2 "Putative ATP-dependent ... 649 2.2e-80 2
UNIPROTKB|P25888 - symbol:rhlE "ATP-dependent RNA helicas... 638 4.1e-79 2
UNIPROTKB|Q9KNA4 - symbol:VC_A0061 "ATP-dependent RNA hel... 634 1.7e-78 2
TIGR_CMR|VC_A0061 - symbol:VC_A0061 "ATP-dependent RNA he... 634 1.7e-78 2
UNIPROTKB|Q8EDC4 - symbol:SO_2838 "ATP-dependent RNA heli... 627 2.0e-77 2
TIGR_CMR|SO_2838 - symbol:SO_2838 "ATP-dependent RNA heli... 627 2.0e-77 2
TIGR_CMR|CPS_1125 - symbol:CPS_1125 "ATP-dependent RNA he... 614 2.5e-77 2
TIGR_CMR|SPO_1443 - symbol:SPO_1443 "ATP-dependent RNA he... 647 6.6e-77 2
UNIPROTKB|Q83DM8 - symbol:rhlE "ATP-dependent RNA helicas... 630 1.4e-76 2
TIGR_CMR|CBU_0670 - symbol:CBU_0670 "ATP-dependent RNA he... 630 1.4e-76 2
UNIPROTKB|Q5L3G9 - symbol:cshA "DEAD-box ATP-dependent RN... 645 9.6e-76 2
TIGR_CMR|SO_3783 - symbol:SO_3783 "ATP-dependent RNA heli... 627 1.6e-75 2
UNIPROTKB|Q4K8U0 - symbol:deaD "Cold-shock DEAD box prote... 613 1.6e-75 2
UNIPROTKB|Q47Z59 - symbol:CPS_3215 "Putative ATP-dependen... 599 4.1e-75 2
TIGR_CMR|CPS_3215 - symbol:CPS_3215 "putative ATP-depende... 599 4.1e-75 2
UNIPROTKB|Q9KLH6 - symbol:VC_A0768 "ATP-dependent RNA hel... 621 8.5e-75 2
TIGR_CMR|VC_A0768 - symbol:VC_A0768 "ATP-dependent RNA he... 621 8.5e-75 2
UNIPROTKB|Q0C4B9 - symbol:HNE_0695 "Putative ATP-dependen... 618 2.3e-74 2
UNIPROTKB|P21507 - symbol:srmB "SrmB, DEAD-box RNA helica... 613 2.3e-74 2
TIGR_CMR|SO_1383 - symbol:SO_1383 "ATP-dependent RNA heli... 610 2.9e-74 2
UNIPROTKB|A0R8U6 - symbol:cshA "DEAD-box ATP-dependent RN... 620 4.7e-74 2
UNIPROTKB|Q63GX5 - symbol:cshA "DEAD-box ATP-dependent RN... 620 4.7e-74 2
UNIPROTKB|Q6HPE6 - symbol:cshA "DEAD-box ATP-dependent RN... 620 4.7e-74 2
UNIPROTKB|Q73EU1 - symbol:cshA "DEAD-box ATP-dependent RN... 620 4.7e-74 2
UNIPROTKB|Q81IT9 - symbol:cshA "DEAD-box ATP-dependent RN... 620 4.7e-74 2
UNIPROTKB|Q81VG0 - symbol:cshA "DEAD-box ATP-dependent RN... 620 4.7e-74 2
TIGR_CMR|BA_0247 - symbol:BA_0247 "ATP-dependent RNA heli... 620 4.7e-74 2
UNIPROTKB|Q8EE19 - symbol:SO_2571 "ATP-dependent RNA heli... 575 9.7e-74 2
TIGR_CMR|SO_2571 - symbol:SO_2571 "ATP-dependent RNA heli... 575 9.7e-74 2
TIGR_CMR|SO_4034 - symbol:SO_4034 "ATP-dependent RNA heli... 608 1.2e-73 2
TIGR_CMR|CPS_1726 - symbol:CPS_1726 "RNA helicase DeaD" s... 605 1.2e-73 2
UNIPROTKB|Q11039 - symbol:deaD "Cold-shock DEAD box prote... 602 1.1e-72 2
UNIPROTKB|P0A9P6 - symbol:deaD "DeaD, DEAD-box RNA helica... 602 2.3e-72 2
TIGR_CMR|GSU_0914 - symbol:GSU_0914 "ATP-dependent RNA he... 573 3.7e-72 2
UNIPROTKB|Q8EBV7 - symbol:SO_3388 "ATP-dependent RNA heli... 602 6.0e-72 2
TIGR_CMR|SO_3388 - symbol:SO_3388 "ATP-dependent RNA heli... 602 6.0e-72 2
UNIPROTKB|P96614 - symbol:cshA "DEAD-box ATP-dependent RN... 614 1.2e-71 2
UNIPROTKB|Q3AFI3 - symbol:CHY_0229 "ATP-dependent RNA hel... 599 1.6e-71 2
TIGR_CMR|CHY_0229 - symbol:CHY_0229 "ATP-dependent RNA he... 599 1.6e-71 2
TIGR_CMR|CPS_1590 - symbol:CPS_1590 "ATP-dependent RNA he... 723 1.8e-71 1
UNIPROTKB|Q0C354 - symbol:rhlE "ATP-dependent RNA helicas... 562 4.2e-71 2
UNIPROTKB|Q8EGU0 - symbol:SO_1501 "ATP-dependent RNA heli... 575 5.3e-71 2
TIGR_CMR|SO_1501 - symbol:SO_1501 "ATP-dependent RNA heli... 575 5.3e-71 2
UNIPROTKB|Q9KLE2 - symbol:VC_A0804 "ATP-dependent RNA hel... 578 8.6e-71 2
TIGR_CMR|VC_A0804 - symbol:VC_A0804 "ATP-dependent RNA he... 578 8.6e-71 2
TIGR_CMR|CPS_1418 - symbol:CPS_1418 "ATP-dependent RNA he... 561 1.1e-70 2
UNIPROTKB|Q81QF0 - symbol:BAS2301 "ATP-dependent RNA heli... 591 1.8e-70 2
TIGR_CMR|BA_2475 - symbol:BA_2475 "ATP-dependent RNA heli... 591 1.8e-70 2
UNIPROTKB|Q48AV0 - symbol:CPS_0042 "ATP-dependent RNA hel... 585 2.3e-70 2
TIGR_CMR|CPS_0042 - symbol:CPS_0042 "ATP-dependent RNA he... 585 2.3e-70 2
UNIPROTKB|Q65N62 - symbol:cshA "DEAD-box ATP-dependent RN... 602 1.2e-69 2
UNIPROTKB|Q9KU63 - symbol:VC_0660 "ATP-dependent RNA heli... 559 8.7e-69 2
TIGR_CMR|VC_0660 - symbol:VC_0660 "ATP-dependent RNA heli... 559 8.7e-69 2
SGD|S000005056 - symbol:DBP2 "ATP-dependent RNA helicase ... 586 1.4e-68 2
SGD|S000005730 - symbol:DED1 "ATP-dependent DEAD (Asp-Glu... 693 2.7e-68 1
CGD|CAL0003204 - symbol:DBP2 species:5476 "Candida albica... 588 2.9e-68 2
UNIPROTKB|Q8EI96 - symbol:srmB "ATP-dependent RNA helicas... 578 2.9e-68 2
TIGR_CMR|SO_0947 - symbol:SO_0947 "ATP-dependent RNA heli... 578 2.9e-68 2
CGD|CAL0004832 - symbol:orf19.7392 species:5476 "Candida ... 691 4.4e-68 1
UNIPROTKB|Q8ECL2 - symbol:SO_3125 "ATP-dependent RNA heli... 557 6.0e-68 2
TIGR_CMR|SO_3125 - symbol:SO_3125 "ATP-dependent RNA heli... 557 6.0e-68 2
TIGR_CMR|CPS_2658 - symbol:CPS_2658 "ATP-dependent RNA he... 542 1.6e-67 2
POMBASE|SPCC1795.11 - symbol:sum3 "translation initiation... 683 3.1e-67 1
SGD|S000006040 - symbol:DBP1 "Putative ATP-dependent RNA ... 682 4.0e-67 1
ZFIN|ZDB-GENE-080204-77 - symbol:ddx43 "DEAD (Asp-Glu-Ala... 567 1.1e-66 2
TIGR_CMR|CPS_3401 - symbol:CPS_3401 "ATP-dependent RNA he... 550 2.3e-66 2
UNIPROTKB|F1NIX1 - symbol:DDX3X "Uncharacterized protein"... 651 6.1e-66 2
ZFIN|ZDB-GENE-030131-1565 - symbol:ddx3 "DEAD (Asp-Glu-Al... 670 7.4e-66 1
TIGR_CMR|VC_2564 - symbol:VC_2564 "ATP-dependent RNA heli... 576 7.7e-66 2
POMBASE|SPBP8B7.16c - symbol:dbp2 "ATP-dependent RNA heli... 545 1.6e-65 2
ZFIN|ZDB-GENE-980526-150 - symbol:pl10 "pl10" species:795... 664 3.2e-65 1
UNIPROTKB|F1NIX2 - symbol:DDX3X "Uncharacterized protein"... 643 4.2e-65 2
TIGR_CMR|DET_0183 - symbol:DET_0183 "ATP-dependent RNA he... 539 4.2e-65 2
ASPGD|ASPL0000013201 - symbol:AN4233 species:162425 "Emer... 524 8.7e-65 2
UNIPROTKB|B4DXX7 - symbol:DDX3Y "Uncharacterized protein"... 655 2.9e-64 1
UNIPROTKB|O15523 - symbol:DDX3Y "ATP-dependent RNA helica... 655 2.9e-64 1
ASPGD|ASPL0000006660 - symbol:AN5931 species:162425 "Emer... 541 2.9e-64 2
UNIPROTKB|Q81JK1 - symbol:BAS5307 "ATP-dependent RNA heli... 529 2.9e-64 2
TIGR_CMR|BA_5703 - symbol:BA_5703 "ATP-dependent RNA heli... 529 2.9e-64 2
MGI|MGI:103064 - symbol:Ddx3x "DEAD/H (Asp-Glu-Ala-Asp/Hi... 653 4.7e-64 1
RGD|1564771 - symbol:Ddx3x "DEAD (Asp-Glu-Ala-Asp) box po... 653 4.7e-64 1
TAIR|locus:2162022 - symbol:AT5G63120 species:3702 "Arabi... 521 4.8e-64 2
UNIPROTKB|A4QSS5 - symbol:DBP2 "ATP-dependent RNA helicas... 545 2.0e-63 2
UNIPROTKB|Q485I3 - symbol:dbpA "ATP-dependent RNA helicas... 534 2.0e-63 2
TIGR_CMR|CPS_1540 - symbol:CPS_1540 "ATP-dependent RNA he... 534 2.0e-63 2
MGI|MGI:1349406 - symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) bo... 646 2.6e-63 1
CGD|CAL0000056 - symbol:orf19.7546 species:5476 "Candida ... 520 2.6e-63 2
UNIPROTKB|G5E631 - symbol:DDX3X "Uncharacterized protein"... 645 3.3e-63 1
UNIPROTKB|J9P0V9 - symbol:DDX3X "Uncharacterized protein"... 645 3.3e-63 1
UNIPROTKB|O00571 - symbol:DDX3X "ATP-dependent RNA helica... 645 3.3e-63 1
UNIPROTKB|F1RX16 - symbol:DDX3X "Uncharacterized protein"... 643 5.4e-63 1
MGI|MGI:91842 - symbol:D1Pas1 "DNA segment, Chr 1, Pasteu... 643 5.4e-63 1
RGD|1309586 - symbol:RGD1309586 "similar to probable ATP-... 643 5.4e-63 1
UNIPROTKB|Q8EIE5 - symbol:dbpA "ATP-dependent RNA helicas... 531 6.9e-63 2
TIGR_CMR|SO_0897 - symbol:SO_0897 "ATP-dependent RNA heli... 531 6.9e-63 2
UNIPROTKB|Q9KMW4 - symbol:VC_A0204 "ATP-dependent RNA hel... 641 8.8e-63 1
TIGR_CMR|VC_A0204 - symbol:VC_A0204 "ATP-dependent RNA he... 641 8.8e-63 1
UNIPROTKB|P0A8J8 - symbol:rhlB "RhlB" species:83333 "Esch... 535 1.1e-62 2
WARNING: Descriptions of 888 database sequences were not reported due to the
limiting value of parameter V = 100.
>TIGR_CMR|GSU_0491 [details] [associations]
symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
Length = 450
Score = 804 (288.1 bits), Expect = 3.0e-95, Sum P(2) = 3.0e-95
Identities = 156/310 (50%), Positives = 224/310 (72%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
PR+LVLTPTRELA QVT A YG +M+ +++ +ILGGMPY Q++LLS + ++ATPG
Sbjct: 74 PRVLVLTPTRELAQQVTDAVRTYGAFMR-VRSGAILGGMPYHAQLRLLSAPVDFIVATPG 132
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RL+D ++ ++ S L++LVLDEADRMLDMGF +D+++I A+P TRQT+LF+AT+D +
Sbjct: 133 RLVDLLDRRSLDLSRLELLVLDEADRMLDMGFSDDVDRIAAASPATRQTLLFTATMDSAM 192
Query: 218 GNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTA 277
+A + ++P + + + ++I Q + DD+ HKNRLL +L+ D+ + +A++F+A
Sbjct: 193 ARLAGRLLREPERIDIAGTKTTHEHIEQRLHVADDLHHKNRLLRHLITDESLRRAIIFSA 252
Query: 278 TKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPA 337
TKRDA+ +A L G AA LHGD+ QNARNRT+ +++GRI++LVATDVAARG+DV
Sbjct: 253 TKRDAENLALELKAQGHSAAALHGDMPQNARNRTIAAMKQGRIRLLVATDVAARGLDVTG 312
Query: 338 ITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVI 397
I+HV N+DLPKF EDYVHRIGRTGRAG +G A+S + E + +IER+ Q +P I
Sbjct: 313 ISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFASLNEVNYLARIERYIGQTLPEHHI 372
Query: 398 NGFEPKKRIR 407
G EP + +R
Sbjct: 373 PGLEPSRPLR 382
Score = 163 (62.4 bits), Expect = 3.0e-95, Sum P(2) = 3.0e-95
Identities = 32/65 (49%), Positives = 45/65 (69%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F + L +LKA+ GYT+PT VQ A+P A+ DL+ ++QTG+GKTAAF+LPAL
Sbjct: 1 MTFAELKLAPHILKAVAACGYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPAL 60
Query: 61 HKFAS 65
+ +S
Sbjct: 61 QRLSS 65
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 651 (234.2 bits), Expect = 5.1e-81, Sum P(2) = 5.1e-81
Identities = 140/312 (44%), Positives = 199/312 (63%)
Query: 92 RFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAIS--ILGGMPYLRQMQLLSRNP 149
R P QPR+LVLTPTRELA QV E + LY + +K +S I GG+ Q+Q +SR
Sbjct: 74 RHGPRQPRVLVLTPTRELAAQVH---ESFKLYARDLKFVSACIFGGVGMNPQVQAMSRGV 130
Query: 150 EILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLF 209
++L+A PGRL+D G ++ SH++ILVLDEADRMLDMGF++D++K++ P RQ +LF
Sbjct: 131 DVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLF 190
Query: 210 SATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRV 269
SAT + ++A + +P ++V + I Q + F HK LL +L+
Sbjct: 191 SATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRV-FRLAANHKRSLLAHLITVGAW 249
Query: 270 GQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVA 329
Q +VFT TK A+ +A+ L+ G A +HG+ QNAR + L + + G ++I+VATD+A
Sbjct: 250 EQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIA 309
Query: 330 ARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTK 389
ARG+D+ + HV N++LP EDYVHRIGRTGRAGR+G A+SLV E +K IER TK
Sbjct: 310 ARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMTK 369
Query: 390 QQIPIEVINGFE 401
Q+I + GF+
Sbjct: 370 QKIADGDLMGFD 381
Score = 181 (68.8 bits), Expect = 5.1e-81, Sum P(2) = 5.1e-81
Identities = 33/62 (53%), Positives = 48/62 (77%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HK 62
+
Sbjct: 61 ER 62
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 649 (233.5 bits), Expect = 2.2e-80, Sum P(2) = 2.2e-80
Identities = 139/312 (44%), Positives = 199/312 (63%)
Query: 92 RFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAIS--ILGGMPYLRQMQLLSRNP 149
R P QPR+LVLTPTRELA QV + + LY + +K +S I GG+ Q+Q ++R
Sbjct: 74 RHGPRQPRVLVLTPTRELAAQVH---DSFKLYARDLKFVSACIFGGVGMNPQVQAMARGV 130
Query: 150 EILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLF 209
++L+A PGRL+D G ++ SH++ILVLDEADRMLDMGF++D++K++ P RQ +LF
Sbjct: 131 DVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLF 190
Query: 210 SATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRV 269
SAT + ++A + +P ++V + I Q + F HK LL +L+
Sbjct: 191 SATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRV-FRLPASHKRALLAHLITAGAW 249
Query: 270 GQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVA 329
Q +VFT TK A+ +A+ L+ G A +HG+ QNAR + L + + G ++ILVATD+A
Sbjct: 250 EQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKAGEVRILVATDIA 309
Query: 330 ARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTK 389
ARG+D+ + HV N++LP EDYVHRIGRTGRAGR+G A+SLV E +K IER TK
Sbjct: 310 ARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMTK 369
Query: 390 QQIPIEVINGFE 401
Q+I + GF+
Sbjct: 370 QKIADGDLMGFD 381
Score = 177 (67.4 bits), Expect = 2.2e-80, Sum P(2) = 2.2e-80
Identities = 33/62 (53%), Positives = 47/62 (75%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E ++ A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HK 62
+
Sbjct: 61 ER 62
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 638 (229.6 bits), Expect = 4.1e-79, Sum P(2) = 4.1e-79
Identities = 135/315 (42%), Positives = 193/315 (61%)
Query: 94 KPAQP-RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEIL 152
K +P R L+LTPTRELA Q+ Y Y+ I+++ + GG+ QM L ++L
Sbjct: 71 KGRRPVRALILTPTRELAAQIGENVRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVL 129
Query: 153 LATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSAT 212
+ATPGRL+D + + ++ILVLDEADRMLDMGFI+DI +++ P RQ +LFSAT
Sbjct: 130 VATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSAT 189
Query: 213 LDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQA 272
+ +AE + +PL ++V +TQ + FVD K LL +++ Q
Sbjct: 190 FSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQV 248
Query: 273 VVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARG 332
+VFT TK A+ +A++LN G +A +HG+ Q AR R L + + G I++LVATD+AARG
Sbjct: 249 LVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARG 308
Query: 333 IDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQI 392
+D+ + HV NY+LP PEDYVHRIGRTGRA G A+SLV E ++ IE+ K++I
Sbjct: 309 LDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEI 368
Query: 393 PIEVINGFEPKKRIR 407
P I G+EP I+
Sbjct: 369 PRIAIPGYEPDPSIK 383
Score = 176 (67.0 bits), Expect = 4.1e-79, Sum P(2) = 4.1e-79
Identities = 33/60 (55%), Positives = 46/60 (76%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>UNIPROTKB|Q9KNA4 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0016070 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT ProtClustDB:CLSK869483
PIR:C82506 RefSeq:NP_232462.1 ProteinModelPortal:Q9KNA4
DNASU:2612119 GeneID:2612119 KEGG:vch:VCA0061 PATRIC:20084709
Uniprot:Q9KNA4
Length = 452
Score = 634 (228.2 bits), Expect = 1.7e-78, Sum P(2) = 1.7e-78
Identities = 136/313 (43%), Positives = 190/313 (60%)
Query: 93 FKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEIL 152
F PR L+L PTRELA QV R L A I GG + Q++ L+R P +
Sbjct: 73 FSAKDPRGLILVPTRELAKQVYGEL-RSMLGGLSYTATLITGGENFNDQVKALARGPRFI 131
Query: 153 LATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTR-QTMLFSA 211
+ATPGRL DH++ + L+ LVLDEADRMLD+GF ++ +I +A R QT++FSA
Sbjct: 132 VATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMFSA 191
Query: 212 TLDGI-VGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVG 270
TLD V +MA + +P + + ++ K+ITQ D + HK LLD +L D
Sbjct: 192 TLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRILADAEYR 251
Query: 271 QAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAA 330
Q ++FTAT+ D D + ++LN + A L G+L+Q RN + R KILV TDVA+
Sbjct: 252 QVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKILVTTDVAS 311
Query: 331 RGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQ 390
RG+D+PA+THV N+D+PK E+YVHR+GRTGRAG G A+SLV + + K++E F +Q
Sbjct: 312 RGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFLQQ 371
Query: 391 QIPIEVINGFEPK 403
+I EV+ G E K
Sbjct: 372 EIQFEVLAGLEGK 384
Score = 174 (66.3 bits), Expect = 1.7e-78, Sum P(2) = 1.7e-78
Identities = 34/67 (50%), Positives = 46/67 (68%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ FK +GL +LK L + + T +Q+QAIP I+GRDL+ SS+TGSGKT AF+LP L
Sbjct: 5 LQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 64
Query: 61 HKFASSK 67
HK +K
Sbjct: 65 HKSLKTK 71
>TIGR_CMR|VC_A0061 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT
ProtClustDB:CLSK869483 PIR:C82506 RefSeq:NP_232462.1
ProteinModelPortal:Q9KNA4 DNASU:2612119 GeneID:2612119
KEGG:vch:VCA0061 PATRIC:20084709 Uniprot:Q9KNA4
Length = 452
Score = 634 (228.2 bits), Expect = 1.7e-78, Sum P(2) = 1.7e-78
Identities = 136/313 (43%), Positives = 190/313 (60%)
Query: 93 FKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEIL 152
F PR L+L PTRELA QV R L A I GG + Q++ L+R P +
Sbjct: 73 FSAKDPRGLILVPTRELAKQVYGEL-RSMLGGLSYTATLITGGENFNDQVKALARGPRFI 131
Query: 153 LATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTR-QTMLFSA 211
+ATPGRL DH++ + L+ LVLDEADRMLD+GF ++ +I +A R QT++FSA
Sbjct: 132 VATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMFSA 191
Query: 212 TLDGI-VGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVG 270
TLD V +MA + +P + + ++ K+ITQ D + HK LLD +L D
Sbjct: 192 TLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRILADAEYR 251
Query: 271 QAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAA 330
Q ++FTAT+ D D + ++LN + A L G+L+Q RN + R KILV TDVA+
Sbjct: 252 QVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKILVTTDVAS 311
Query: 331 RGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQ 390
RG+D+PA+THV N+D+PK E+YVHR+GRTGRAG G A+SLV + + K++E F +Q
Sbjct: 312 RGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFLQQ 371
Query: 391 QIPIEVINGFEPK 403
+I EV+ G E K
Sbjct: 372 EIQFEVLAGLEGK 384
Score = 174 (66.3 bits), Expect = 1.7e-78, Sum P(2) = 1.7e-78
Identities = 34/67 (50%), Positives = 46/67 (68%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ FK +GL +LK L + + T +Q+QAIP I+GRDL+ SS+TGSGKT AF+LP L
Sbjct: 5 LQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 64
Query: 61 HKFASSK 67
HK +K
Sbjct: 65 HKSLKTK 71
>UNIPROTKB|Q8EDC4 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 627 (225.8 bits), Expect = 2.0e-77, Sum P(2) = 2.0e-77
Identities = 132/308 (42%), Positives = 198/308 (64%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
PR+L+L PTRELA QV + R + + KAIS+LGG + Q + L++ P ++ATPG
Sbjct: 74 PRVLILLPTRELAHQVYSQL-RLLVANTQYKAISVLGGENFNDQAKALAKEPHFIVATPG 132
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATP-VTRQTMLFSATLD-G 215
R+ DH+ + + L++L+LDEADRMLD+GF ++ I +A RQT++FSATLD
Sbjct: 133 RIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQLKAINEAADHKRRQTLMFSATLDHS 192
Query: 216 IVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVF 275
+ +A + K+PL + + + + ++I+Q I D + HK LL LL D+ Q ++F
Sbjct: 193 EINEIAAALLKNPLHVAIGTAHAEHQDISQRIYLCDHLDHKEALLSRLLSDESHKQVIIF 252
Query: 276 TATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDV 335
TAT+ D + +A +L+ GF A L G+L Q ARN+ ++ RG+ +ILV TDVA+RG+D+
Sbjct: 253 TATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQFARGQQQILVTTDVASRGLDL 312
Query: 336 PAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIE 395
++ V N+D+PKF E+YVHRIGRTGRAG G A+SLV + + KK++ F ++ I
Sbjct: 313 LNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDSFKKVQLFLRKTFEIS 372
Query: 396 VINGFEPK 403
VI G E K
Sbjct: 373 VIKGLEAK 380
Score = 171 (65.3 bits), Expect = 2.0e-77, Sum P(2) = 2.0e-77
Identities = 32/67 (47%), Positives = 48/67 (71%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F L + +L++L +G PT +QEQA+P A++G+DL+ SS+TGSGKT AF+LPAL
Sbjct: 1 MQFTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAL 60
Query: 61 HKFASSK 67
+ S++
Sbjct: 61 QRVISTR 67
>TIGR_CMR|SO_2838 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 627 (225.8 bits), Expect = 2.0e-77, Sum P(2) = 2.0e-77
Identities = 132/308 (42%), Positives = 198/308 (64%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
PR+L+L PTRELA QV + R + + KAIS+LGG + Q + L++ P ++ATPG
Sbjct: 74 PRVLILLPTRELAHQVYSQL-RLLVANTQYKAISVLGGENFNDQAKALAKEPHFIVATPG 132
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATP-VTRQTMLFSATLD-G 215
R+ DH+ + + L++L+LDEADRMLD+GF ++ I +A RQT++FSATLD
Sbjct: 133 RIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQLKAINEAADHKRRQTLMFSATLDHS 192
Query: 216 IVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVF 275
+ +A + K+PL + + + + ++I+Q I D + HK LL LL D+ Q ++F
Sbjct: 193 EINEIAAALLKNPLHVAIGTAHAEHQDISQRIYLCDHLDHKEALLSRLLSDESHKQVIIF 252
Query: 276 TATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDV 335
TAT+ D + +A +L+ GF A L G+L Q ARN+ ++ RG+ +ILV TDVA+RG+D+
Sbjct: 253 TATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQFARGQQQILVTTDVASRGLDL 312
Query: 336 PAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIE 395
++ V N+D+PKF E+YVHRIGRTGRAG G A+SLV + + KK++ F ++ I
Sbjct: 313 LNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDSFKKVQLFLRKTFEIS 372
Query: 396 VINGFEPK 403
VI G E K
Sbjct: 373 VIKGLEAK 380
Score = 171 (65.3 bits), Expect = 2.0e-77, Sum P(2) = 2.0e-77
Identities = 32/67 (47%), Positives = 48/67 (71%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F L + +L++L +G PT +QEQA+P A++G+DL+ SS+TGSGKT AF+LPAL
Sbjct: 1 MQFTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAL 60
Query: 61 HKFASSK 67
+ S++
Sbjct: 61 QRVISTR 67
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 614 (221.2 bits), Expect = 2.5e-77, Sum P(2) = 2.5e-77
Identities = 131/308 (42%), Positives = 188/308 (61%)
Query: 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGR 158
R L+LTPTRELA Q++ + E YG Y+ + ++ + GG+ Q+ L + ++L+ATPGR
Sbjct: 82 RALILTPTRELAAQISESIEVYGKYLN-LHSMVVFGGVKINPQIARLRQGVDVLVATPGR 140
Query: 159 LIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVG 218
L+D N + FS L++ +LDEADRMLDMGFI DI+K++ A P RQ +LFSAT +
Sbjct: 141 LLDLYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKKLMTALPKDRQNLLFSATFSPEIR 200
Query: 219 NMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTAT 278
+A+ + +PL + V++ + +TQ + VD K +L +L+++ Q +VFT T
Sbjct: 201 ALAKGMVNNPLEISVDAENSTAEKVTQWLTAVDK-KRKPAVLTHLIKENNWQQVLVFTKT 259
Query: 279 KRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAI 338
K A+ + L G AA +HG+ Q AR + L + G +KILVATD+AARGID+ +
Sbjct: 260 KHGANKLTKHLEAEGLTAAAIHGNKSQGARTKALAAFKDGSVKILVATDIAARGIDIDLL 319
Query: 339 THVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVIN 398
V N+DLP PEDYVHRIGRT RAG G A+SLV E + IE +Q I +VI
Sbjct: 320 PQVVNFDLPNVPEDYVHRIGRTARAGNTGQALSLVCADELDLLWGIEHVIQQHIERKVIE 379
Query: 399 GFEPKKRI 406
F P +
Sbjct: 380 KFIPANEL 387
Score = 183 (69.5 bits), Expect = 2.5e-77, Sum P(2) = 2.5e-77
Identities = 37/69 (53%), Positives = 50/69 (72%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F +GL E +LKA+ GY P+ +Q QAIPA ISGRD++ ++QTG+GKTA F LP L +
Sbjct: 8 FTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLLQR 67
Query: 63 FASSK-NKI 70
+SSK NK+
Sbjct: 68 LSSSKGNKV 76
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 647 (232.8 bits), Expect = 6.6e-77, Sum P(2) = 6.6e-77
Identities = 137/312 (43%), Positives = 196/312 (62%)
Query: 90 RLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNP 149
R R + PR LVL PTRELA QV + Y ++K KA+ ++GG+ + Q L+ R
Sbjct: 66 RGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKAL-LIGGVSFKEQDALIDRGV 124
Query: 150 EILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLF 209
++L+ATPGRL+DH GK+ + +QI+V+DEADRMLDMGFI DIE+I TP TRQT+ F
Sbjct: 125 DVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFF 184
Query: 210 SATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSI-LFVD-----DILHKNRLLDYL 263
SAT+ + + P ++V + I Q + LF + K +L L
Sbjct: 185 SATMAPEIERITNTFLSAPARIEVARQATASETIEQGVVLFKGSRRDREASEKRAVLRAL 244
Query: 264 L--RDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIK 321
+ ++ A++F K D DI+A L G+ AAP+HGDL Q+ R RTL+ R G+++
Sbjct: 245 IDAEGEKCTNAIIFCNRKTDVDIVAKSLQKYGYDAAPIHGDLDQSQRTRTLDGFREGKLR 304
Query: 322 ILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNI 381
+LVA+DVAARG+DVP+++HVFN+D+P PEDYVHRIGRTGRAGR+G A++L + +
Sbjct: 305 LLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGRDGKAITLCIPRDEKAL 364
Query: 382 KKIERFTKQQIP 393
IE+ ++ IP
Sbjct: 365 DAIEKLIQKDIP 376
Score = 146 (56.5 bits), Expect = 6.6e-77, Sum P(2) = 6.6e-77
Identities = 29/65 (44%), Positives = 42/65 (64%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F + L+ VLKA+ + GY PT +Q AIP A+ GRD++ +QTG+GKTA+F LP +
Sbjct: 4 FSELNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITL 63
Query: 63 FASSK 67
A +
Sbjct: 64 LARGR 68
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 630 (226.8 bits), Expect = 1.4e-76, Sum P(2) = 1.4e-76
Identities = 133/322 (41%), Positives = 200/322 (62%)
Query: 83 KIYTHKERLRFKPAQP--RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLR 140
+++ + L+ + A+P R L+LTPTRELA+QV YG Y+ +KA + GG+
Sbjct: 71 RLFVSRPPLQ-RSAKPVIRALILTPTRELAVQVFECVRAYGKYLP-LKATVVHGGVSIKP 128
Query: 141 QMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDAT 200
Q+ L R +IL+ATPGRL+D +N G +N S ++ VLDEADRMLDMGF+ DI +I+
Sbjct: 129 QINHLRRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLL 188
Query: 201 PVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLL 260
P +RQ +LFSAT + + + + P +++V IT + VD K LL
Sbjct: 189 PESRQNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAARITHVVHPVDR-QRKRELL 247
Query: 261 DYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRI 320
+++ K Q +VFT TK A+ ++ +L G +A +HG+ Q AR R L ++G+I
Sbjct: 248 SFMIGSKNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKI 307
Query: 321 KILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMN 380
++LVATDVAARG+D+ + HV N++LP +DYVHR+GRTGRA +G A+SLV+ E
Sbjct: 308 RVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRL 367
Query: 381 IKKIERFTKQQIPIEVINGFEP 402
++ IE+ + ++P EVI G+EP
Sbjct: 368 LRDIEKLLQSKMPQEVIPGYEP 389
Score = 160 (61.4 bits), Expect = 1.4e-76, Sum P(2) = 1.4e-76
Identities = 31/67 (46%), Positives = 47/67 (70%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+ +GL +L+A+ + GY +PT VQ QAIP + RD++V++QTG+GKTA F LP L
Sbjct: 10 MSFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLL 69
Query: 61 HKFASSK 67
+ S+
Sbjct: 70 QRLFVSR 76
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 630 (226.8 bits), Expect = 1.4e-76, Sum P(2) = 1.4e-76
Identities = 133/322 (41%), Positives = 200/322 (62%)
Query: 83 KIYTHKERLRFKPAQP--RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLR 140
+++ + L+ + A+P R L+LTPTRELA+QV YG Y+ +KA + GG+
Sbjct: 71 RLFVSRPPLQ-RSAKPVIRALILTPTRELAVQVFECVRAYGKYLP-LKATVVHGGVSIKP 128
Query: 141 QMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDAT 200
Q+ L R +IL+ATPGRL+D +N G +N S ++ VLDEADRMLDMGF+ DI +I+
Sbjct: 129 QINHLRRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLL 188
Query: 201 PVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLL 260
P +RQ +LFSAT + + + + P +++V IT + VD K LL
Sbjct: 189 PESRQNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAARITHVVHPVDR-QRKRELL 247
Query: 261 DYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRI 320
+++ K Q +VFT TK A+ ++ +L G +A +HG+ Q AR R L ++G+I
Sbjct: 248 SFMIGSKNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKI 307
Query: 321 KILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMN 380
++LVATDVAARG+D+ + HV N++LP +DYVHR+GRTGRA +G A+SLV+ E
Sbjct: 308 RVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRL 367
Query: 381 IKKIERFTKQQIPIEVINGFEP 402
++ IE+ + ++P EVI G+EP
Sbjct: 368 LRDIEKLLQSKMPQEVIPGYEP 389
Score = 160 (61.4 bits), Expect = 1.4e-76, Sum P(2) = 1.4e-76
Identities = 31/67 (46%), Positives = 47/67 (70%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+ +GL +L+A+ + GY +PT VQ QAIP + RD++V++QTG+GKTA F LP L
Sbjct: 10 MSFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLL 69
Query: 61 HKFASSK 67
+ S+
Sbjct: 70 QRLFVSR 76
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 645 (232.1 bits), Expect = 9.6e-76, Sum P(2) = 9.6e-76
Identities = 134/307 (43%), Positives = 195/307 (63%)
Query: 89 ERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRN 148
E++ K + + LV+ PTRELA+QV+ + G +K+++ + I GG RQ++ L ++
Sbjct: 62 EKVNVKNSAVQALVVAPTRELAIQVSEELYKIGA-VKRVRVLPIYGGQDIERQIRALKKH 120
Query: 149 PEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTML 208
P +++ TPGR+IDH+N G + H+ +VLDEAD ML+MGFI DIE I+ P RQT+L
Sbjct: 121 PHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLL 180
Query: 209 FSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLR--D 266
FSAT+ + +AE +P ++KV + E NI Q L V H+ + D L R D
Sbjct: 181 FSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEV----HEKKKFDILTRLLD 236
Query: 267 KRVGQ-AVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVA 325
+ + A+VF TKR D +A+ LN+ G+ A +HGDL Q R L + G I+ILVA
Sbjct: 237 IQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVA 296
Query: 326 TDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIE 385
TDVAARG+D+ +THV+N+D+P+ PE YVHRIGRTGRAG+ G A++ V E + IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIE 356
Query: 386 RFTKQQI 392
R TK+++
Sbjct: 357 RTTKRKM 363
Score = 137 (53.3 bits), Expect = 9.6e-76, Sum P(2) = 9.6e-76
Identities = 26/66 (39%), Positives = 46/66 (69%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F+ +GL + V+KA+ ++G+ + T +Q + IP ++ +D+I +QTG+GKTAAF +P + K
Sbjct: 4 FQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEK 63
Query: 63 FASSKN 68
+ KN
Sbjct: 64 -VNVKN 68
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 627 (225.8 bits), Expect = 1.6e-75, Sum P(2) = 1.6e-75
Identities = 134/309 (43%), Positives = 187/309 (60%)
Query: 94 KPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILL 153
K Q R LVLTPTRELA QV + E YG Y+ A+ + GG+P Q+ L ++L+
Sbjct: 70 KSGQTRALVLTPTRELAAQVGESVETYGKYLPLRSAV-VFGGVPINPQINKLRHGVDVLV 128
Query: 154 ATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATL 213
ATPGRL+D + + F+ L+ILVLDEADRMLDMGFI DI+KI+ P RQ ++FSAT
Sbjct: 129 ATPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQNLMFSATF 188
Query: 214 DGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAV 273
+ +A+ + P+ + V + Q I VD K+ LL L++ + Q +
Sbjct: 189 SDEIRELAKGLVNHPVEISVTPRNAAATTVKQWICPVDKT-QKSALLIQLIKQENWQQVL 247
Query: 274 VFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGI 333
VF+ TK A+ +A L + AA +HG+ Q AR + L + + G +++LVATD+AARG+
Sbjct: 248 VFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAARGL 307
Query: 334 DVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIP 393
D+ + V N+DLP PEDYVHRIGRTGRAG G AVSLV+ E +K IER + +
Sbjct: 308 DIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKLLKDIERLINRVLE 367
Query: 394 IEVINGFEP 402
+ + GF P
Sbjct: 368 RQEVEGFSP 376
Score = 153 (58.9 bits), Expect = 1.6e-75, Sum P(2) = 1.6e-75
Identities = 29/64 (45%), Positives = 45/64 (70%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F ++GL + KA+ + GY P+ +Q QAIPA ++G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MSFSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL 60
Query: 61 HKFA 64
A
Sbjct: 61 ELLA 64
>UNIPROTKB|Q4K8U0 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A" species:220664
"Pseudomonas protegens Pf-5" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006950
GO:GO:0006355 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
OMA:LPQGMPK RefSeq:YP_261343.1 ProteinModelPortal:Q4K8U0
GeneID:3477377 KEGG:pfl:PFL_4251 PATRIC:19877913
ProtClustDB:CLSK867560 BioCyc:PFLU220664:GIX8-4286-MONOMER
Uniprot:Q4K8U0
Length = 557
Score = 613 (220.8 bits), Expect = 1.6e-75, Sum P(2) = 1.6e-75
Identities = 136/303 (44%), Positives = 188/303 (62%)
Query: 92 RFKPA--QPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNP 149
R P+ +P+ L+L PTRELALQV A E Y M + +++ GG P Q++ +
Sbjct: 67 RIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNGA 126
Query: 150 EILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLF 209
+I++ATPGRL DH+ + + + LVLDEAD ML +GF++D+E I A P TRQT+LF
Sbjct: 127 QIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTVLF 186
Query: 210 SATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRV 269
SATL + +AE KDP +K+ S + I Q+ L V + +L LL +
Sbjct: 187 SATLPQSIRAIAERHLKDPKHVKIQSKTQTVTAIEQAHLLVHADQKTSAVLS-LLEVEDF 245
Query: 270 GQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVA 329
++F TK+ +A L G+ AA L+GD+ QN R R +++L+ GR+ I+VATDVA
Sbjct: 246 DALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVA 305
Query: 330 ARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTK 389
ARG+DVP ITHVFN D+P PE YVHRIGRTGRAGR G A+ LV ER ++ IER T
Sbjct: 306 ARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTG 365
Query: 390 QQI 392
Q++
Sbjct: 366 QKV 368
Score = 167 (63.8 bits), Expect = 1.6e-75, Sum P(2) = 1.6e-75
Identities = 30/67 (44%), Positives = 47/67 (70%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F ++ LH ++ A+V GY +P+ +Q+Q+IP ++G D+I +QTG+GKTAAF LP LH+
Sbjct: 8 FAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHR 67
Query: 63 FASSKNK 69
SK +
Sbjct: 68 IDPSKRE 74
>UNIPROTKB|Q47Z59 [details] [associations]
symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 599 (215.9 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 124/308 (40%), Positives = 192/308 (62%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
PR+++LTPTRELA QV + + + KA+ ILGG + Q+++L + PE ++ATPG
Sbjct: 74 PRVVILTPTRELAKQVFSQLRLFTANTQ-YKAVLILGGENFNDQVKVLQKEPEFIVATPG 132
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVT-RQTMLFSATLDGI 216
RL DH+ G + + L++L+LDEADRMLD+GF ++ +I A RQT+LFSATLD
Sbjct: 133 RLADHLTQGHFHLNGLELLILDEADRMLDLGFSKELTQINKAADHRKRQTLLFSATLDHA 192
Query: 217 -VGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVF 275
V A + P + +N+ + +I + D++ K LL + L ++ Q ++F
Sbjct: 193 QVNEFATELLTKPKRIAINAGHSEHVDIAKRFYLADNLTQKEALLQHFLVTEKSQQIIIF 252
Query: 276 TATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDV 335
TAT+ D D +A L A L G+L+Q RN+ +E+ +G+ KILV TD+A+RG+D+
Sbjct: 253 TATRSDTDRLAKLLTEQNLNAVALSGELNQGQRNQIMESFSKGQHKILVTTDLASRGLDL 312
Query: 336 PAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIE 395
++HV N+D+PK E++VHRIGRTGRAG G A+SLV + +++K +E F +Q+I
Sbjct: 313 INVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLVGPNDWLSLKNVEAFLQQKISFT 372
Query: 396 VINGFEPK 403
+ G + K
Sbjct: 373 KVEGIKVK 380
Score = 177 (67.4 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 34/69 (49%), Positives = 49/69 (71%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F GL ++ + +G+ +PT +Q+QAIPAA++G DLI SS+TGSGKT AF++PAL
Sbjct: 1 MQFSDFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPAL 60
Query: 61 HKFASSKNK 69
+ SKN+
Sbjct: 61 QRL--SKNR 67
>TIGR_CMR|CPS_3215 [details] [associations]
symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 599 (215.9 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 124/308 (40%), Positives = 192/308 (62%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
PR+++LTPTRELA QV + + + KA+ ILGG + Q+++L + PE ++ATPG
Sbjct: 74 PRVVILTPTRELAKQVFSQLRLFTANTQ-YKAVLILGGENFNDQVKVLQKEPEFIVATPG 132
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVT-RQTMLFSATLDGI 216
RL DH+ G + + L++L+LDEADRMLD+GF ++ +I A RQT+LFSATLD
Sbjct: 133 RLADHLTQGHFHLNGLELLILDEADRMLDLGFSKELTQINKAADHRKRQTLLFSATLDHA 192
Query: 217 -VGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVF 275
V A + P + +N+ + +I + D++ K LL + L ++ Q ++F
Sbjct: 193 QVNEFATELLTKPKRIAINAGHSEHVDIAKRFYLADNLTQKEALLQHFLVTEKSQQIIIF 252
Query: 276 TATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDV 335
TAT+ D D +A L A L G+L+Q RN+ +E+ +G+ KILV TD+A+RG+D+
Sbjct: 253 TATRSDTDRLAKLLTEQNLNAVALSGELNQGQRNQIMESFSKGQHKILVTTDLASRGLDL 312
Query: 336 PAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIE 395
++HV N+D+PK E++VHRIGRTGRAG G A+SLV + +++K +E F +Q+I
Sbjct: 313 INVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLVGPNDWLSLKNVEAFLQQKISFT 372
Query: 396 VINGFEPK 403
+ G + K
Sbjct: 373 KVEGIKVK 380
Score = 177 (67.4 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 34/69 (49%), Positives = 49/69 (71%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F GL ++ + +G+ +PT +Q+QAIPAA++G DLI SS+TGSGKT AF++PAL
Sbjct: 1 MQFSDFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPAL 60
Query: 61 HKFASSKNK 69
+ SKN+
Sbjct: 61 QRL--SKNR 67
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 621 (223.7 bits), Expect = 8.5e-75, Sum P(2) = 8.5e-75
Identities = 127/304 (41%), Positives = 189/304 (62%)
Query: 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGR 158
R LVL PTRELA QV + + Y + +K +++ GG Q+ L +IL+ATPGR
Sbjct: 83 RALVLVPTRELAQQVLDSLQAYAKGTE-LKIVAVYGGTSMKVQLNHLRGGVDILIATPGR 141
Query: 159 LIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVG 218
L+DH + + +++LVLDEADRMLDMGF+ D+++++ RQT+ FSAT D +
Sbjct: 142 LLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFDSKIK 201
Query: 219 NMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTAT 278
+A I +DP+ ++V + + Q + VD K LL YL+ K Q +VFT T
Sbjct: 202 AVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDK-KRKRELLSYLIGSKNWQQVLVFTKT 260
Query: 279 KRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAI 338
++ +D +A+ L + G A ++GD Q AR + L++ + G+++ L+ATDVAARG+D+ +
Sbjct: 261 RQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLDIAQL 320
Query: 339 THVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVIN 398
V NYD+P EDYVHRIGRTGRAG G AVSL++H E+ ++ IER ++P E +
Sbjct: 321 EQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEAIERLLNTRLPQEWLK 380
Query: 399 GFEP 402
GFEP
Sbjct: 381 GFEP 384
Score = 152 (58.6 bits), Expect = 8.5e-75, Sum P(2) = 8.5e-75
Identities = 27/63 (42%), Positives = 42/63 (66%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F +GL +L L ++G PT +Q+QAIP + G+D++ +QTG+GKTAAF LP +
Sbjct: 6 ITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65
Query: 61 HKF 63
+F
Sbjct: 66 QRF 68
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 621 (223.7 bits), Expect = 8.5e-75, Sum P(2) = 8.5e-75
Identities = 127/304 (41%), Positives = 189/304 (62%)
Query: 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGR 158
R LVL PTRELA QV + + Y + +K +++ GG Q+ L +IL+ATPGR
Sbjct: 83 RALVLVPTRELAQQVLDSLQAYAKGTE-LKIVAVYGGTSMKVQLNHLRGGVDILIATPGR 141
Query: 159 LIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVG 218
L+DH + + +++LVLDEADRMLDMGF+ D+++++ RQT+ FSAT D +
Sbjct: 142 LLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFDSKIK 201
Query: 219 NMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTAT 278
+A I +DP+ ++V + + Q + VD K LL YL+ K Q +VFT T
Sbjct: 202 AVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDK-KRKRELLSYLIGSKNWQQVLVFTKT 260
Query: 279 KRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAI 338
++ +D +A+ L + G A ++GD Q AR + L++ + G+++ L+ATDVAARG+D+ +
Sbjct: 261 RQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLDIAQL 320
Query: 339 THVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVIN 398
V NYD+P EDYVHRIGRTGRAG G AVSL++H E+ ++ IER ++P E +
Sbjct: 321 EQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEAIERLLNTRLPQEWLK 380
Query: 399 GFEP 402
GFEP
Sbjct: 381 GFEP 384
Score = 152 (58.6 bits), Expect = 8.5e-75, Sum P(2) = 8.5e-75
Identities = 27/63 (42%), Positives = 42/63 (66%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F +GL +L L ++G PT +Q+QAIP + G+D++ +QTG+GKTAAF LP +
Sbjct: 6 ITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65
Query: 61 HKF 63
+F
Sbjct: 66 QRF 68
>UNIPROTKB|Q0C4B9 [details] [associations]
symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
Length = 536
Score = 618 (222.6 bits), Expect = 2.3e-74, Sum P(2) = 2.3e-74
Identities = 131/304 (43%), Positives = 188/304 (61%)
Query: 92 RFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEI 151
R + PR L+L PTRELA QV E+YG Y+K A+ ++GG+ + Q LL R ++
Sbjct: 70 RARARMPRCLILCPTRELAAQVAENFEKYGKYLKLTMAL-LIGGVSFKEQETLLQRGVDV 128
Query: 152 LLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSA 211
L+ATPGRL+D + GK+ ++ L++DEADRMLDMGFI DIEKI P RQT+LFSA
Sbjct: 129 LIATPGRLMDQFDRGKLLMMGVETLIIDEADRMLDMGFIPDIEKICAKLPANRQTLLFSA 188
Query: 212 TLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSI--LFVDDILHKNRLLDYLLRDKRV 269
T + +A+ KDP ++V + + I+Q + L +D + L ++ V
Sbjct: 189 TFPTDIQRLAKTFQKDPKKIEVTRPAQTAETISQFVVKLPTNDGKARRTALRRVIEATNV 248
Query: 270 GQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVA 329
+VF K + DI+A L G AAP+HGDL Q+ R+ TL+ R G++K+LVA+DVA
Sbjct: 249 KNGIVFCNRKVEVDIVAASLTKHGHDAAPIHGDLPQSVRSETLQRFRDGKLKLLVASDVA 308
Query: 330 ARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTK 389
ARG+D+P + HVFN+ P EDYVHRIGRTGRAGR G + ++V A+ + + + K
Sbjct: 309 ARGLDIPDVGHVFNFGPPPKDEDYVHRIGRTGRAGRTGESYTVVTPADDKSWGFVVKMIK 368
Query: 390 QQIP 393
+ +P
Sbjct: 369 KDVP 372
Score = 151 (58.2 bits), Expect = 2.3e-74, Sum P(2) = 2.3e-74
Identities = 29/65 (44%), Positives = 44/65 (67%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F GL E +LKA+ + GYT PT +Q +AIP + G D+ +QTG+GKTAAF+LP + +
Sbjct: 6 FADFGLAENILKAVTESGYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVLPMIQR 65
Query: 63 FASSK 67
++ +
Sbjct: 66 LSTGR 70
>UNIPROTKB|P21507 [details] [associations]
symbol:srmB "SrmB, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0033592 "RNA strand annealing activity"
evidence=IDA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:D64044 GO:GO:0030687 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0033592 EMBL:D13169
OMA:PLAMDQR HOGENOM:HOG000268807 PDB:2YJT PDBsum:2YJT EMBL:X14152
PIR:G65035 RefSeq:NP_417071.1 RefSeq:YP_490804.1
ProteinModelPortal:P21507 SMR:P21507 DIP:DIP-10920N IntAct:P21507
MINT:MINT-1225512 PRIDE:P21507 EnsemblBacteria:EBESCT00000003180
EnsemblBacteria:EBESCT00000015098 GeneID:12934372 GeneID:947055
KEGG:ecj:Y75_p2529 KEGG:eco:b2576 PATRIC:32120551 EchoBASE:EB0968
EcoGene:EG10975 KO:K05590 ProtClustDB:PRK11192
BioCyc:EcoCyc:EG10975-MONOMER BioCyc:ECOL316407:JW2560-MONOMER
Genevestigator:P21507 Uniprot:P21507
Length = 444
Score = 613 (220.8 bits), Expect = 2.3e-74, Sum P(2) = 2.3e-74
Identities = 126/315 (40%), Positives = 192/315 (60%)
Query: 92 RFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEI 151
R K PR+L+LTPTRELA+QV+ + + +I GG+ Y+ ++ S N +I
Sbjct: 71 RKKSGPPRILILTPTRELAMQVSDHARELAKHTH-LDIATITGGVAYMNHAEVFSENQDI 129
Query: 152 LLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSA 211
++AT GRL+ ++ + ++ L+LDEADRMLDMGF DIE I T +QT+LFSA
Sbjct: 130 VVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSA 189
Query: 212 TLDG-IVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVG 270
TL+G + + AE + +DP+ + N +++K I Q DD+ HK LL +LL+
Sbjct: 190 TLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEAT 249
Query: 271 QAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAA 330
+++VF + +A+ L +G L G++ Q RN ++ L GR+ +LVATDVAA
Sbjct: 250 RSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAA 309
Query: 331 RGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQ 390
RGID+P ++HVFN+D+P+ + Y+HRIGRT RAGR G A+SLV + + + K+ R+ ++
Sbjct: 310 RGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEE 369
Query: 391 QIPIEVINGFEPKKR 405
I VI+ PK R
Sbjct: 370 PIKARVIDELRPKTR 384
Score = 156 (60.0 bits), Expect = 2.3e-74, Sum P(2) = 2.3e-74
Identities = 30/58 (51%), Positives = 43/58 (74%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
F + L E +L+AL G+T+PT +Q AIP A+ GRD++ S+ TG+GKTAA++LPAL
Sbjct: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 610 (219.8 bits), Expect = 2.9e-74, Sum P(2) = 2.9e-74
Identities = 127/307 (41%), Positives = 184/307 (59%)
Query: 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGR 158
R+L+LTPTRELA QV E Y Y+ ++I GG+ Q Q L R +I++ATPGR
Sbjct: 76 RVLILTPTRELAAQVAENVEAYSKYLN-FSVLTIYGGVKVETQAQKLKRGADIIVATPGR 134
Query: 159 LIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVG 218
L++H+ + ++ S + LVLDEADRMLDMGF DI+KI+ A RQ +LFSAT V
Sbjct: 135 LLEHLTACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQNLLFSATFSSAVK 194
Query: 219 NMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTAT 278
+A + P ++ + ++Q + V+ K LL L+ K Q +VFTAT
Sbjct: 195 KLANEMMIKPQVISADKQNTTADTVSQVVYPVEQ-RRKRELLSELIGKKNWQQVLVFTAT 253
Query: 279 KRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAI 338
+ AD + LN+ G + +HG+ Q +R R L G++++LVAT+VAARG+D+P++
Sbjct: 254 RDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRVLVATEVAARGLDIPSL 313
Query: 339 THVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVIN 398
+V N+DLP EDYVHRIGRTGRAG++G A+S V+ E + IE+ Q+I +
Sbjct: 314 EYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLADIEKLIGQKIRRITVP 373
Query: 399 GFEPKKR 405
G+E R
Sbjct: 374 GYEVGSR 380
Score = 158 (60.7 bits), Expect = 2.9e-74, Sum P(2) = 2.9e-74
Identities = 34/76 (44%), Positives = 47/76 (61%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+S +L+A+ GY K T +Q+QAIPA G+D++ S+QTG+GKTAAF LP L
Sbjct: 1 MRFESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60
Query: 61 HKFASSKNKIPVMKKN 76
K +N +K N
Sbjct: 61 QKMV--ENPSETLKSN 74
>UNIPROTKB|A0R8U6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
ProteinModelPortal:A0R8U6 STRING:A0R8U6
EnsemblBacteria:EBBACT00000069056 GeneID:4546566
GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
Length = 528
Score = 620 (223.3 bits), Expect = 4.7e-74, Sum P(2) = 4.7e-74
Identities = 132/311 (42%), Positives = 194/311 (62%)
Query: 82 NKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQ 141
+K+ THKE ++ +V+ PTRELA+QV + G + K+++ + I GG RQ
Sbjct: 62 DKVDTHKESVQG-------IVIAPTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQ 113
Query: 142 MQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATP 201
++ L ++P I++ TPGR++DH+N + +++ +VLDEAD ML+MGFI DIE I+ P
Sbjct: 114 IRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVP 173
Query: 202 VTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLD 261
T QT+LFSAT+ + +AE +P +KV + E NI Q L V + K +L
Sbjct: 174 ETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQE-KKKFDVLT 232
Query: 262 YLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIK 321
LL + A+VF TKR D +++ LN+ G+ A +HGDL Q R L + G I+
Sbjct: 233 RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 322 ILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNI 381
+LVATDVAARG+D+ +THV+N+D+P+ PE YVHRIGRTGRAG+ G A+ V E +
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQL 352
Query: 382 KKIERFTKQQI 392
K IER TK+++
Sbjct: 353 KNIERTTKRKM 363
Score = 146 (56.5 bits), Expect = 4.7e-74, Sum P(2) = 4.7e-74
Identities = 27/68 (39%), Positives = 46/68 (67%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F+ +GL + +L+++ +G+ + T +Q + IP A+ G+D+I +QTG+GKTAAF LP L K
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63
Query: 63 FASSKNKI 70
+ K +
Sbjct: 64 VDTHKESV 71
>UNIPROTKB|Q63GX5 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
"bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
ProteinModelPortal:Q63GX5 STRING:Q63GX5
EnsemblBacteria:EBBACT00000041470 GeneID:3022962
GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
Length = 528
Score = 620 (223.3 bits), Expect = 4.7e-74, Sum P(2) = 4.7e-74
Identities = 132/311 (42%), Positives = 194/311 (62%)
Query: 82 NKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQ 141
+K+ THKE ++ +V+ PTRELA+QV + G + K+++ + I GG RQ
Sbjct: 62 DKVDTHKESVQG-------IVIAPTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQ 113
Query: 142 MQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATP 201
++ L ++P I++ TPGR++DH+N + +++ +VLDEAD ML+MGFI DIE I+ P
Sbjct: 114 IRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVP 173
Query: 202 VTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLD 261
T QT+LFSAT+ + +AE +P +KV + E NI Q L V + K +L
Sbjct: 174 ETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQE-KKKFDVLT 232
Query: 262 YLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIK 321
LL + A+VF TKR D +++ LN+ G+ A +HGDL Q R L + G I+
Sbjct: 233 RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 322 ILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNI 381
+LVATDVAARG+D+ +THV+N+D+P+ PE YVHRIGRTGRAG+ G A+ V E +
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQL 352
Query: 382 KKIERFTKQQI 392
K IER TK+++
Sbjct: 353 KNIERTTKRKM 363
Score = 146 (56.5 bits), Expect = 4.7e-74, Sum P(2) = 4.7e-74
Identities = 27/68 (39%), Positives = 46/68 (67%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F+ +GL + +L+++ +G+ + T +Q + IP A+ G+D+I +QTG+GKTAAF LP L K
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63
Query: 63 FASSKNKI 70
+ K +
Sbjct: 64 VDTHKESV 71
>UNIPROTKB|Q6HPE6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:281309 "Bacillus thuringiensis serovar konkukian str.
97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
Length = 528
Score = 620 (223.3 bits), Expect = 4.7e-74, Sum P(2) = 4.7e-74
Identities = 132/311 (42%), Positives = 194/311 (62%)
Query: 82 NKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQ 141
+K+ THKE ++ +V+ PTRELA+QV + G + K+++ + I GG RQ
Sbjct: 62 DKVDTHKESVQG-------IVIAPTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQ 113
Query: 142 MQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATP 201
++ L ++P I++ TPGR++DH+N + +++ +VLDEAD ML+MGFI DIE I+ P
Sbjct: 114 IRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVP 173
Query: 202 VTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLD 261
T QT+LFSAT+ + +AE +P +KV + E NI Q L V + K +L
Sbjct: 174 ETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQE-KKKFDVLT 232
Query: 262 YLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIK 321
LL + A+VF TKR D +++ LN+ G+ A +HGDL Q R L + G I+
Sbjct: 233 RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 322 ILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNI 381
+LVATDVAARG+D+ +THV+N+D+P+ PE YVHRIGRTGRAG+ G A+ V E +
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQL 352
Query: 382 KKIERFTKQQI 392
K IER TK+++
Sbjct: 353 KNIERTTKRKM 363
Score = 146 (56.5 bits), Expect = 4.7e-74, Sum P(2) = 4.7e-74
Identities = 27/68 (39%), Positives = 46/68 (67%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F+ +GL + +L+++ +G+ + T +Q + IP A+ G+D+I +QTG+GKTAAF LP L K
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63
Query: 63 FASSKNKI 70
+ K +
Sbjct: 64 VDTHKESV 71
>UNIPROTKB|Q73EU1 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
Uniprot:Q73EU1
Length = 525
Score = 620 (223.3 bits), Expect = 4.7e-74, Sum P(2) = 4.7e-74
Identities = 132/311 (42%), Positives = 194/311 (62%)
Query: 82 NKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQ 141
+K+ THKE ++ +V+ PTRELA+QV + G + K+++ + I GG RQ
Sbjct: 62 DKVDTHKESVQG-------IVIAPTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQ 113
Query: 142 MQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATP 201
++ L ++P I++ TPGR++DH+N + +++ +VLDEAD ML+MGFI DIE I+ P
Sbjct: 114 IRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVP 173
Query: 202 VTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLD 261
T QT+LFSAT+ + +AE +P +KV + E NI Q L V + K +L
Sbjct: 174 ETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQE-KKKFDVLT 232
Query: 262 YLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIK 321
LL + A+VF TKR D +++ LN+ G+ A +HGDL Q R L + G I+
Sbjct: 233 RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 322 ILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNI 381
+LVATDVAARG+D+ +THV+N+D+P+ PE YVHRIGRTGRAG+ G A+ V E +
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQL 352
Query: 382 KKIERFTKQQI 392
K IER TK+++
Sbjct: 353 KNIERTTKRKM 363
Score = 146 (56.5 bits), Expect = 4.7e-74, Sum P(2) = 4.7e-74
Identities = 27/68 (39%), Positives = 46/68 (67%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F+ +GL + +L+++ +G+ + T +Q + IP A+ G+D+I +QTG+GKTAAF LP L K
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63
Query: 63 FASSKNKI 70
+ K +
Sbjct: 64 VDTHKESV 71
>UNIPROTKB|Q81IT9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
Length = 533
Score = 620 (223.3 bits), Expect = 4.7e-74, Sum P(2) = 4.7e-74
Identities = 132/311 (42%), Positives = 194/311 (62%)
Query: 82 NKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQ 141
+K+ THKE ++ +V+ PTRELA+QV + G + K+++ + I GG RQ
Sbjct: 62 DKVDTHKESVQG-------IVIAPTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQ 113
Query: 142 MQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATP 201
++ L ++P I++ TPGR++DH+N + +++ +VLDEAD ML+MGFI DIE I+ P
Sbjct: 114 IRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVP 173
Query: 202 VTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLD 261
T QT+LFSAT+ + +AE +P +KV + E NI Q L V + K +L
Sbjct: 174 ETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQE-KKKFDVLT 232
Query: 262 YLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIK 321
LL + A+VF TKR D +++ LN+ G+ A +HGDL Q R L + G I+
Sbjct: 233 RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 322 ILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNI 381
+LVATDVAARG+D+ +THV+N+D+P+ PE YVHRIGRTGRAG+ G A+ V E +
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQL 352
Query: 382 KKIERFTKQQI 392
K IER TK+++
Sbjct: 353 KNIERTTKRKM 363
Score = 146 (56.5 bits), Expect = 4.7e-74, Sum P(2) = 4.7e-74
Identities = 27/68 (39%), Positives = 46/68 (67%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F+ +GL + +L+++ +G+ + T +Q + IP A+ G+D+I +QTG+GKTAAF LP L K
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63
Query: 63 FASSKNKI 70
+ K +
Sbjct: 64 VDTHKESV 71
>UNIPROTKB|Q81VG0 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 620 (223.3 bits), Expect = 4.7e-74, Sum P(2) = 4.7e-74
Identities = 132/311 (42%), Positives = 194/311 (62%)
Query: 82 NKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQ 141
+K+ THKE ++ +V+ PTRELA+QV + G + K+++ + I GG RQ
Sbjct: 62 DKVDTHKESVQG-------IVIAPTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQ 113
Query: 142 MQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATP 201
++ L ++P I++ TPGR++DH+N + +++ +VLDEAD ML+MGFI DIE I+ P
Sbjct: 114 IRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVP 173
Query: 202 VTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLD 261
T QT+LFSAT+ + +AE +P +KV + E NI Q L V + K +L
Sbjct: 174 ETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQE-KKKFDVLT 232
Query: 262 YLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIK 321
LL + A+VF TKR D +++ LN+ G+ A +HGDL Q R L + G I+
Sbjct: 233 RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 322 ILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNI 381
+LVATDVAARG+D+ +THV+N+D+P+ PE YVHRIGRTGRAG+ G A+ V E +
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQL 352
Query: 382 KKIERFTKQQI 392
K IER TK+++
Sbjct: 353 KNIERTTKRKM 363
Score = 146 (56.5 bits), Expect = 4.7e-74, Sum P(2) = 4.7e-74
Identities = 27/68 (39%), Positives = 46/68 (67%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F+ +GL + +L+++ +G+ + T +Q + IP A+ G+D+I +QTG+GKTAAF LP L K
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63
Query: 63 FASSKNKI 70
+ K +
Sbjct: 64 VDTHKESV 71
>TIGR_CMR|BA_0247 [details] [associations]
symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 620 (223.3 bits), Expect = 4.7e-74, Sum P(2) = 4.7e-74
Identities = 132/311 (42%), Positives = 194/311 (62%)
Query: 82 NKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQ 141
+K+ THKE ++ +V+ PTRELA+QV + G + K+++ + I GG RQ
Sbjct: 62 DKVDTHKESVQG-------IVIAPTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQ 113
Query: 142 MQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATP 201
++ L ++P I++ TPGR++DH+N + +++ +VLDEAD ML+MGFI DIE I+ P
Sbjct: 114 IRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVP 173
Query: 202 VTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLD 261
T QT+LFSAT+ + +AE +P +KV + E NI Q L V + K +L
Sbjct: 174 ETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQE-KKKFDVLT 232
Query: 262 YLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIK 321
LL + A+VF TKR D +++ LN+ G+ A +HGDL Q R L + G I+
Sbjct: 233 RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 322 ILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNI 381
+LVATDVAARG+D+ +THV+N+D+P+ PE YVHRIGRTGRAG+ G A+ V E +
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQL 352
Query: 382 KKIERFTKQQI 392
K IER TK+++
Sbjct: 353 KNIERTTKRKM 363
Score = 146 (56.5 bits), Expect = 4.7e-74, Sum P(2) = 4.7e-74
Identities = 27/68 (39%), Positives = 46/68 (67%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F+ +GL + +L+++ +G+ + T +Q + IP A+ G+D+I +QTG+GKTAAF LP L K
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63
Query: 63 FASSKNKI 70
+ K +
Sbjct: 64 VDTHKESV 71
>UNIPROTKB|Q8EE19 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 575 (207.5 bits), Expect = 9.7e-74, Sum P(2) = 9.7e-74
Identities = 126/315 (40%), Positives = 182/315 (57%)
Query: 92 RFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEI 151
+ +P + R ++LTPTRELALQV +Y Y+ + A+++ GG+ Q + L ++
Sbjct: 68 KIRPKRVRSIILTPTRELALQVEQNINQYAKYLP-LTAMAMYGGVDAAPQKKRLIEGVDL 126
Query: 152 LLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSA 211
L+ATPGRL+D I F + +LVLDEADRMLDMGFI DI I++ P RQ +LFSA
Sbjct: 127 LVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQRQNLLFSA 186
Query: 212 TLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQ 271
TL V +A+ D + ++++ I Q + VD K+ LL +L+++ Q
Sbjct: 187 TLSKQVKALAKTAIPDAIEIEISRKNAASTQIDQWLTTVDKD-RKSALLSHLIKENNWAQ 245
Query: 272 AVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAAR 331
A++F TK A + +L G +A H Q R + L + + G++ LVAT V +R
Sbjct: 246 ALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKVPFLVATGVVSR 305
Query: 332 GIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQ 391
GID+ A+ V NYDLP +DY+HRIGRTGRAG G A+S V+ + N+ IER
Sbjct: 306 GIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCAIERRLGHI 365
Query: 392 IPIEVINGFEPKKRI 406
I + I GFEPKK +
Sbjct: 366 IERKNIEGFEPKKAV 380
Score = 188 (71.2 bits), Expect = 9.7e-74, Sum P(2) = 9.7e-74
Identities = 31/66 (46%), Positives = 52/66 (78%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F +GLH ++KA+ ++GY PT +Q QAIP+ ++G++++ ++QTG+GKTA+F+LP L
Sbjct: 1 MPFSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLL 60
Query: 61 HKFASS 66
H+FA +
Sbjct: 61 HRFADA 66
>TIGR_CMR|SO_2571 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 575 (207.5 bits), Expect = 9.7e-74, Sum P(2) = 9.7e-74
Identities = 126/315 (40%), Positives = 182/315 (57%)
Query: 92 RFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEI 151
+ +P + R ++LTPTRELALQV +Y Y+ + A+++ GG+ Q + L ++
Sbjct: 68 KIRPKRVRSIILTPTRELALQVEQNINQYAKYLP-LTAMAMYGGVDAAPQKKRLIEGVDL 126
Query: 152 LLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSA 211
L+ATPGRL+D I F + +LVLDEADRMLDMGFI DI I++ P RQ +LFSA
Sbjct: 127 LVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQRQNLLFSA 186
Query: 212 TLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQ 271
TL V +A+ D + ++++ I Q + VD K+ LL +L+++ Q
Sbjct: 187 TLSKQVKALAKTAIPDAIEIEISRKNAASTQIDQWLTTVDKD-RKSALLSHLIKENNWAQ 245
Query: 272 AVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAAR 331
A++F TK A + +L G +A H Q R + L + + G++ LVAT V +R
Sbjct: 246 ALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKVPFLVATGVVSR 305
Query: 332 GIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQ 391
GID+ A+ V NYDLP +DY+HRIGRTGRAG G A+S V+ + N+ IER
Sbjct: 306 GIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCAIERRLGHI 365
Query: 392 IPIEVINGFEPKKRI 406
I + I GFEPKK +
Sbjct: 366 IERKNIEGFEPKKAV 380
Score = 188 (71.2 bits), Expect = 9.7e-74, Sum P(2) = 9.7e-74
Identities = 31/66 (46%), Positives = 52/66 (78%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F +GLH ++KA+ ++GY PT +Q QAIP+ ++G++++ ++QTG+GKTA+F+LP L
Sbjct: 1 MPFSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLL 60
Query: 61 HKFASS 66
H+FA +
Sbjct: 61 HRFADA 66
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 608 (219.1 bits), Expect = 1.2e-73, Sum P(2) = 1.2e-73
Identities = 128/300 (42%), Positives = 181/300 (60%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P++LVL PTRELA+QV A Y +MK + I GG +Q+ L R P++++ TPG
Sbjct: 74 PQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALKRGPQVIVGTPG 133
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
R++DHM G + LQ LVLDEAD ML MGFI+DIE I++ TP RQ LFSAT+ +
Sbjct: 134 RVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPPQRQLALFSATMPEQI 193
Query: 218 GNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTA 277
+A K+ + + + +I Q + V +K L +L + ++F
Sbjct: 194 KRVANKHLKNATNISIAASHTTVDSIEQRFVQVSQH-NKLEALVRVLEVENTEGIIIFVR 252
Query: 278 TKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPA 337
T+ +A++L G+ ++PLHGD++Q AR R +E L+ G++ IL+ATDVAARG+DV
Sbjct: 253 TRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDILIATDVAARGLDVER 312
Query: 338 ITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQI-PIEV 396
I HV NYD+P E YVHRIGRTGRAGR G A+ V E ++ IER T +I P++V
Sbjct: 313 IGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERATNSRISPMKV 372
Score = 154 (59.3 bits), Expect = 1.2e-73, Sum P(2) = 1.2e-73
Identities = 29/63 (46%), Positives = 45/63 (71%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F+ +GL E +L+AL ++GY KPT +Q +I ++G+D++ +QTG+GKT AF LP L+K
Sbjct: 8 FRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNK 67
Query: 63 FAS 65
S
Sbjct: 68 VTS 70
>TIGR_CMR|CPS_1726 [details] [associations]
symbol:CPS_1726 "RNA helicase DeaD" species:167879
"Colwellia psychrerythraea 34H" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 RefSeq:YP_268464.1 ProteinModelPortal:Q484Q1
STRING:Q484Q1 GeneID:3523325 KEGG:cps:CPS_1726 PATRIC:21466621
OMA:WIVKGVE ProtClustDB:CLSK741103
BioCyc:CPSY167879:GI48-1803-MONOMER Uniprot:Q484Q1
Length = 611
Score = 605 (218.0 bits), Expect = 1.2e-73, Sum P(2) = 1.2e-73
Identities = 125/292 (42%), Positives = 180/292 (61%)
Query: 97 QPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATP 156
+P+++VL PTRELA+QV A E +G MK ++ ++ GG Y Q Q L R ++++ TP
Sbjct: 83 KPQLMVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQSYGPQFQQLERGAQVVVGTP 142
Query: 157 GRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGI 216
GRL+DH+ + L++ VLDEAD ML+MGF+ DI+ I+D P T Q LFSAT+
Sbjct: 143 GRLMDHLRRKSLKLDELRVCVLDEADEMLNMGFLEDIQWILDHIPKTAQMCLFSATMPPA 202
Query: 217 VGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFT 276
+ +A KDP +KV +++K + NITQ V I K L+ + ++F
Sbjct: 203 IRKIANRFLKDPEHIKVAAVKKAKANITQYAWKVSGIT-KMTALERIAEVVEYDAMIIFV 261
Query: 277 ATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVP 336
T+ D IA++L +G+ A L+GDL+Q R R ++ ++ G+ ILVATDV ARG+D+P
Sbjct: 262 RTRNDTVDIAEKLERAGYPALALNGDLNQAQRERCIDQMKSGKSSILVATDVVARGLDIP 321
Query: 337 AITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFT 388
I+ V NYDLP E YVHRIGRTGRAGR G +++ V E +I+ ER T
Sbjct: 322 RISLVINYDLPGDNEAYVHRIGRTGRAGREGMSIAFVRPREMYSIRHYERLT 373
Score = 157 (60.3 bits), Expect = 1.2e-73, Sum P(2) = 1.2e-73
Identities = 32/71 (45%), Positives = 48/71 (67%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F S+GL E +L A++ +G+T T +Q IP ++G+D++ +QTG+GKTAAF LPAL K
Sbjct: 17 FASLGLPENLLSAVLSIGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAFGLPALAK 76
Query: 63 FASSKNKIPVM 73
+S K +M
Sbjct: 77 IDTSIKKPQLM 87
Score = 41 (19.5 bits), Expect = 9.3e-08, Sum P(2) = 9.3e-08
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 341 VFNYDLPKFPEDYVHRIGRT 360
V NYDLP + RI RT
Sbjct: 377 VLNYDLPNIQDIGKIRIERT 396
>UNIPROTKB|Q11039 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A homolog"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
ProtClustDB:CLSK791051 Uniprot:Q11039
Length = 563
Score = 602 (217.0 bits), Expect = 1.1e-72, Sum P(2) = 1.1e-72
Identities = 133/307 (43%), Positives = 185/307 (60%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P+ LVL PTRELALQV A RYG Y+ ++ + I GG Y Q+ L R ++++ TPG
Sbjct: 82 PQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGAQVVVGTPG 141
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
R+IDH+ ++ S + LVLDEAD ML MGF +D+E+I+ TP +Q LFSAT+ +
Sbjct: 142 RMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALFSATMPPAI 201
Query: 218 GNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTA 277
++ DP + + +NI+QS + + K L +L + +VF
Sbjct: 202 RKLSAKYLHDPFEVTCKAKTAVAENISQSYI---QVARKMDALTRVLEVEPFEAMIVFVR 258
Query: 278 TKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPA 337
TK+ + IA++L GF AA + GD+ Q R RT+ LR G I ILVATDVAARG+DV
Sbjct: 259 TKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAARGLDVER 318
Query: 338 ITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQ-----QI 392
I+HV NYD+P E YVHRIGRTGRAGR+G A+ V+ E +K IE+ T+Q Q+
Sbjct: 319 ISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATRQTLTEAQL 378
Query: 393 P-IEVIN 398
P +E +N
Sbjct: 379 PTVEDVN 385
Score = 151 (58.2 bits), Expect = 1.1e-72, Sum P(2) = 1.1e-72
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F + +H VL+A+ VGY PT +Q IPA ++G D++ +QTG+GKTAAF +P L K
Sbjct: 15 FADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSK 74
Query: 63 FASSKNKIP 71
+ +K+P
Sbjct: 75 IDIT-SKVP 82
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 602 (217.0 bits), Expect = 2.3e-72, Sum P(2) = 2.3e-72
Identities = 132/317 (41%), Positives = 194/317 (61%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P++LVL PTRELA+QV A + +M+ + +++ GG Y Q++ L + P+I++ TPG
Sbjct: 75 PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPG 134
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RL+DH+ G ++ S L LVLDEAD ML MGFI D+E I+ P QT LFSAT+ +
Sbjct: 135 RLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAI 194
Query: 218 GNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTA 277
+ K+P +++ S + +I+QS V + KN L L + A++F
Sbjct: 195 RRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG-MRKNEALVRFLEAEDFDAAIIFVR 253
Query: 278 TKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPA 337
TK +A+ L +G+ +A L+GD++Q R +TLE L+ GR+ IL+ATDVAARG+DV
Sbjct: 254 TKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVER 313
Query: 338 ITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIP-IEV 396
I+ V NYD+P E YVHRIGRTGRAGR G A+ V + ER ++ IER K IP +E+
Sbjct: 314 ISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVEL 373
Query: 397 ING-FEPKKRIRTYYSR 412
N K+R+ + ++
Sbjct: 374 PNAELLGKRRLEKFAAK 390
Score = 148 (57.2 bits), Expect = 2.3e-72, Sum P(2) = 2.3e-72
Identities = 29/58 (50%), Positives = 41/58 (70%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
F +GL +L+AL +GY KP+ +Q + IP ++GRD++ +QTGSGKTAAF LP L
Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65
Score = 43 (20.2 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
Identities = 30/125 (24%), Positives = 54/125 (43%)
Query: 136 MPYLRQMQLLSRNPEILLATPGR-LIDHMNSGKINFS-HLQ---ILVLDEADRM-LDMGF 189
+P L+ + + P+IL+ P R L + +FS H++ ++ L R + +
Sbjct: 62 LPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121
Query: 190 INDIEKIVDATPVTRQTMLFSATLD-----GIVGNMAENITKDPLILKVNSIEKKQKNIT 244
+ +IV TP L TLD G+V + A+ + + I V +I +
Sbjct: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181
Query: 245 QSILF 249
Q+ LF
Sbjct: 182 QTALF 186
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 573 (206.8 bits), Expect = 3.7e-72, Sum P(2) = 3.7e-72
Identities = 126/313 (40%), Positives = 189/313 (60%)
Query: 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGR 158
R LV+ PTRELA Q+ + G +++++++ GG+ Q+Q L E+++A PGR
Sbjct: 72 RALVIAPTRELAEQINDSFVTLGR-QTRLRSVTVYGGVGVNPQVQKLKAGAEVVVACPGR 130
Query: 159 LIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVG 218
L+DH+ G I+ S L++LVLDEAD+M DMGF+ DI +++ P RQT+LFSAT+ +
Sbjct: 131 LLDHIAQGTIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLPPRRQTLLFSATMPIDIR 190
Query: 219 NMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTAT 278
+A++I DP+ ++V ++ + ++ V+ L K LL LLR ++FT T
Sbjct: 191 TLAQDILVDPVTVQVGTVAPAV-TVAHALYPVEQHL-KTPLLLELLRHTDTESVLIFTRT 248
Query: 279 KRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAI 338
K A + ++L +G+ AA L G+L QN R L+ R G +ILVATD+AARGIDV +
Sbjct: 249 KHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQILVATDIAARGIDVSQV 308
Query: 339 THVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVIN 398
+HV NYD+P E Y+HRIGRTGRA R+G A +LV + ++ IER I +
Sbjct: 309 SHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTLVTSDDGAMVRAIERSLGAPIERRTVQ 368
Query: 399 GFE-----PKKRI 406
GF+ PKK +
Sbjct: 369 GFDYSVPAPKKDV 381
Score = 175 (66.7 bits), Expect = 3.7e-72, Sum P(2) = 3.7e-72
Identities = 33/62 (53%), Positives = 43/62 (69%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+FKS G H V + GY PT +Q QAIPA ++GRD++ +QTG+GKTAAF LP L
Sbjct: 1 MDFKSFGFHPAVATGIAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPIL 60
Query: 61 HK 62
H+
Sbjct: 61 HR 62
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 602 (217.0 bits), Expect = 6.0e-72, Sum P(2) = 6.0e-72
Identities = 120/304 (39%), Positives = 186/304 (61%)
Query: 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGR 158
R LVL PTRELALQV + +Y I+ GG+ Q + + ++L+ATPGR
Sbjct: 77 RALVLVPTRELALQVQQSFVKYAKGTD-IRVGIAYGGVSIEAQQAVFNAGIDVLIATPGR 135
Query: 159 LIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVG 218
L+DH+ G +N + L LV DEADRMLDMGF+++I+ ++ P RQT+LFSATLD +
Sbjct: 136 LLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQRQTLLFSATLDDSIF 195
Query: 219 NMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTAT 278
+ ++N+ +DP ++V I Q + +D K + +L+R K Q ++F+ T
Sbjct: 196 SFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAIDSD-RKTEFVSHLVRSKNWQQVLIFSRT 254
Query: 279 KRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAI 338
K+ D + +LN G HGDL Q AR + L+ ++G +++LVATDVAARG+D+ +
Sbjct: 255 KQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVLVATDVAARGLDIAEL 314
Query: 339 THVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVIN 398
+V N++LP EDY+HRIGRTGRAG G A++L + + + ++++E +++P +
Sbjct: 315 QYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEVETLLDKRLPQQWYP 374
Query: 399 GFEP 402
GFEP
Sbjct: 375 GFEP 378
Score = 144 (55.7 bits), Expect = 6.0e-72, Sum P(2) = 6.0e-72
Identities = 26/60 (43%), Positives = 44/60 (73%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F ++ L+ ++ L ++GY +PT +Q +AIPA ++ +D++ +QTG+GKTAAF LP L
Sbjct: 1 MSFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPIL 60
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 602 (217.0 bits), Expect = 6.0e-72, Sum P(2) = 6.0e-72
Identities = 120/304 (39%), Positives = 186/304 (61%)
Query: 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGR 158
R LVL PTRELALQV + +Y I+ GG+ Q + + ++L+ATPGR
Sbjct: 77 RALVLVPTRELALQVQQSFVKYAKGTD-IRVGIAYGGVSIEAQQAVFNAGIDVLIATPGR 135
Query: 159 LIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVG 218
L+DH+ G +N + L LV DEADRMLDMGF+++I+ ++ P RQT+LFSATLD +
Sbjct: 136 LLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQRQTLLFSATLDDSIF 195
Query: 219 NMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTAT 278
+ ++N+ +DP ++V I Q + +D K + +L+R K Q ++F+ T
Sbjct: 196 SFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAIDSD-RKTEFVSHLVRSKNWQQVLIFSRT 254
Query: 279 KRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAI 338
K+ D + +LN G HGDL Q AR + L+ ++G +++LVATDVAARG+D+ +
Sbjct: 255 KQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVLVATDVAARGLDIAEL 314
Query: 339 THVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVIN 398
+V N++LP EDY+HRIGRTGRAG G A++L + + + ++++E +++P +
Sbjct: 315 QYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEVETLLDKRLPQQWYP 374
Query: 399 GFEP 402
GFEP
Sbjct: 375 GFEP 378
Score = 144 (55.7 bits), Expect = 6.0e-72, Sum P(2) = 6.0e-72
Identities = 26/60 (43%), Positives = 44/60 (73%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F ++ L+ ++ L ++GY +PT +Q +AIPA ++ +D++ +QTG+GKTAAF LP L
Sbjct: 1 MSFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPIL 60
>UNIPROTKB|P96614 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI] [GO:0010501 "RNA secondary
structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
GO:GO:0010501 Uniprot:P96614
Length = 494
Score = 614 (221.2 bits), Expect = 1.2e-71, Sum P(2) = 1.2e-71
Identities = 129/303 (42%), Positives = 189/303 (62%)
Query: 92 RFKPAQPRM--LVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNP 149
+ P P + +V+ PTRELA+QV+ + G K+ K + I GG RQ++ L +NP
Sbjct: 64 KINPESPNIQAIVIAPTRELAIQVSEELYKIG-QDKRAKVLPIYGGQDIGRQIRALKKNP 122
Query: 150 EILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLF 209
I++ TPGRL+DH+N I +++ +V+DEAD ML+MGFI+DIE I+ P QT+LF
Sbjct: 123 NIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLF 182
Query: 210 SATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRV 269
SAT+ + +AE +P +KV + E NI Q L V + K L LL +
Sbjct: 183 SATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQE-RKKFDTLTRLLDIQSP 241
Query: 270 GQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVA 329
A+VF TKR D +A+ LN+ G+ A +HGDL Q R L + G I++LVATDVA
Sbjct: 242 ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVA 301
Query: 330 ARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTK 389
ARG+D+ +THV+N+D+P+ PE YVHRIGRTGRAG+ G A++ + E+ ++ IE+ TK
Sbjct: 302 ARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTK 361
Query: 390 QQI 392
+++
Sbjct: 362 RKM 364
Score = 129 (50.5 bits), Expect = 1.2e-71, Sum P(2) = 1.2e-71
Identities = 24/62 (38%), Positives = 41/62 (66%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F+ L ++KA+ ++G+ + T +Q Q IP +S +D+I +QTG+GKTAAF +P +
Sbjct: 3 ITFQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLV 62
Query: 61 HK 62
K
Sbjct: 63 EK 64
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 599 (215.9 bits), Expect = 1.6e-71, Sum P(2) = 1.6e-71
Identities = 123/306 (40%), Positives = 195/306 (63%)
Query: 92 RFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEI 151
R K AQ +L++TPTRELALQV + G Y+K ++A+++ GG RQ++ L + E+
Sbjct: 66 RGKKAQ--VLIVTPTRELALQVADEVAKLGKYLK-VRALAVYGGQAIERQIRGLRQGVEV 122
Query: 152 LLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSA 211
++ TPGR++DH+ + ++I++LDEAD MLDMGFI+DIE I++ +QT+LFSA
Sbjct: 123 IVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLFSA 182
Query: 212 TLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQ 271
TL + + + +K+ EK I Q + + L+ L + + Q
Sbjct: 183 TLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPETEKIEGLVSILNSELPI-Q 241
Query: 272 AVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAAR 331
A+VF TK+ D + ++LN G+ A LHGD+ Q R +T+++ + G+ ++LVATDVAAR
Sbjct: 242 AIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDVAAR 301
Query: 332 GIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQ 391
G+D+P ++HV N+D+P+ PE Y+HRIGRTGRAGR G A++L+N+ ER +K IE ++
Sbjct: 302 GLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLLKAIEEAINKR 361
Query: 392 IPIEVI 397
+ E++
Sbjct: 362 LKREIL 367
Score = 143 (55.4 bits), Expect = 1.6e-71, Sum P(2) = 1.6e-71
Identities = 27/65 (41%), Positives = 43/65 (66%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
FK +GL +LKA+ +G+ PT +Q++AIP + G +L+ + TG+GKTAA++LP L +
Sbjct: 4 FKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQR 63
Query: 63 FASSK 67
K
Sbjct: 64 IQRGK 68
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 599 (215.9 bits), Expect = 1.6e-71, Sum P(2) = 1.6e-71
Identities = 123/306 (40%), Positives = 195/306 (63%)
Query: 92 RFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEI 151
R K AQ +L++TPTRELALQV + G Y+K ++A+++ GG RQ++ L + E+
Sbjct: 66 RGKKAQ--VLIVTPTRELALQVADEVAKLGKYLK-VRALAVYGGQAIERQIRGLRQGVEV 122
Query: 152 LLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSA 211
++ TPGR++DH+ + ++I++LDEAD MLDMGFI+DIE I++ +QT+LFSA
Sbjct: 123 IVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLFSA 182
Query: 212 TLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQ 271
TL + + + +K+ EK I Q + + L+ L + + Q
Sbjct: 183 TLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPETEKIEGLVSILNSELPI-Q 241
Query: 272 AVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAAR 331
A+VF TK+ D + ++LN G+ A LHGD+ Q R +T+++ + G+ ++LVATDVAAR
Sbjct: 242 AIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDVAAR 301
Query: 332 GIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQ 391
G+D+P ++HV N+D+P+ PE Y+HRIGRTGRAGR G A++L+N+ ER +K IE ++
Sbjct: 302 GLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLLKAIEEAINKR 361
Query: 392 IPIEVI 397
+ E++
Sbjct: 362 LKREIL 367
Score = 143 (55.4 bits), Expect = 1.6e-71, Sum P(2) = 1.6e-71
Identities = 27/65 (41%), Positives = 43/65 (66%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
FK +GL +LKA+ +G+ PT +Q++AIP + G +L+ + TG+GKTAA++LP L +
Sbjct: 4 FKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQR 63
Query: 63 FASSK 67
K
Sbjct: 64 IQRGK 68
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
Identities = 161/401 (40%), Positives = 239/401 (59%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+ SIGL +LKA+ GY T +Q++AIP G DL+ S+QTG+GKTAAF LP L
Sbjct: 1 MSVDSIGLSADLLKAVKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
A + + + ++N+ + E+ A R L+LTPTRELA QV +++
Sbjct: 61 DAIAKANHAAKSSTTSTDENSAE-----EKSASGQAI-RALILTPTRELANQVADNIKQF 114
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+ IK+ + GG Q ++L + ++L+ATPGRL++H+ ++ S ++ LVLDE
Sbjct: 115 SQYLP-IKSGVVYGGGKMASQTKMLKQGLDVLVATPGRLLEHLALRNVDLSQVKFLVLDE 173
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF+ DIEK++ A QT++FSAT V ++A + K P + V+
Sbjct: 174 ADRMLDMGFLTDIEKLLLAVKHKHQTLMFSATFSDRVKSLANQLLKSPKTISVSKENTTS 233
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
I Q++ +V + K LL L+ Q +VF TK A+ +A L + G AA H
Sbjct: 234 GKIKQAVYWVTEE-RKRELLSELIGVNNWQQVLVFAGTKESANTLAKELKLDGIKAALCH 292
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD Q ARN+ LE G++++LVATDVAARG+D+P + V N+ LP PEDYVHR+GRT
Sbjct: 293 GDKTQGARNKALEQFSEGKVRVLVATDVAARGLDIPDLAFVVNFHLPFLPEDYVHRVGRT 352
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
GRAG++G A+SLV+ + ++ IE+ +++ V G+E
Sbjct: 353 GRAGKSGTAISLVSPKDERFLENIEQLIERKFERIVAPGYE 393
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 562 (202.9 bits), Expect = 4.2e-71, Sum P(2) = 4.2e-71
Identities = 122/290 (42%), Positives = 172/290 (59%)
Query: 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGR 158
R+LVL PTRELA Q+ + YG + ++ + + GG Q++ L R IL+ATPGR
Sbjct: 82 RVLVLAPTRELAGQIATSFGTYGAGLN-LRVVMVCGGAKIGGQIRQLERGAHILVATPGR 140
Query: 159 LIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVG 218
LID M ++ ++ L+LDEAD+MLD+GFI+ + I P RQT+ FSAT+ V
Sbjct: 141 LIDLMEQRAVSLDKVETLILDEADQMLDLGFIHALRAIAKNVPSKRQTLFFSATMPKAVE 200
Query: 219 NMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTAT 278
++A ++P + V I Q + FV+ K LL +RD + A+VFT T
Sbjct: 201 SLAATFLRNPAEVSVAPPATTAGRIEQRVCFVEQP-EKASLLIEKIRDPELRSAIVFTRT 259
Query: 279 KRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAI 338
K AD + RL + + +HG+ Q+ R + LE + GR+ ILVATD+AARGI V A+
Sbjct: 260 KHGADGVVKRLAKADIDSVAIHGNKSQSQREKALEAFKAGRVPILVATDIAARGIHVDAL 319
Query: 339 THVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFT 388
THV NYDLP PE +VHRIGRT RAG +G A+S + ER ++ IE+ T
Sbjct: 320 THVINYDLPDVPEQFVHRIGRTARAGNSGVAISFCSRDERPTLRAIEKLT 369
Score = 176 (67.0 bits), Expect = 4.2e-71, Sum P(2) = 4.2e-71
Identities = 34/71 (47%), Positives = 48/71 (67%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F+S+GL +L +L K GYT PT +QEQAIP I GRD++ +QTG+GKT AF P L
Sbjct: 8 DFQSLGLTGRILTSLTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFAAPILD 67
Query: 62 KFASSKNKIPV 72
+ + + + PV
Sbjct: 68 RLSRNASPAPV 78
>UNIPROTKB|Q8EGU0 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 575 (207.5 bits), Expect = 5.3e-71, Sum P(2) = 5.3e-71
Identities = 128/316 (40%), Positives = 189/316 (59%)
Query: 89 ERLRFKPA-QP--RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLL 145
E+L KPA +P R LV+TPTRELA+QV A ++Y ++ +K +++ GG Q + +
Sbjct: 61 EQLAAKPADKPLLRALVMTPTRELAIQVCANIQKYSQFLP-LKTLAVYGGANMNPQRKGV 119
Query: 146 SRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQ 205
+ +IL+ATPGRL D + ++ S + LV+DEADRMLD+GF+ DIEK+ Q
Sbjct: 120 EQGVDILVATPGRLFDIIGQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVHQ 179
Query: 206 TMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLR 265
TMLFSAT V ++ + P VN E + + +++ D K LL L+
Sbjct: 180 TMLFSATYSDAVKQLSHKMLNQPQW--VNVAENTTASTVEQLVYRVDKRRKAELLSELVG 237
Query: 266 DKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVA 325
Q +VF +TK A+ + L + G A HGD Q ARNR L++ + G++++LVA
Sbjct: 238 RNNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLVA 297
Query: 326 TDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIE 385
TDVAARG+D+ A+ V N +LP EDYVHRIGRTGRAG +G A+S V+ A+ + +IE
Sbjct: 298 TDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEIE 357
Query: 386 RFTKQQIPIEVINGFE 401
+++P+ V G+E
Sbjct: 358 ALIGEKLPVTVQPGYE 373
Score = 162 (62.1 bits), Expect = 5.3e-71, Sum P(2) = 5.3e-71
Identities = 31/74 (41%), Positives = 49/74 (66%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F ++GL +L A+ + GY + T VQ+Q IP A+ G+D++ +QTG+GKTAAF LP L
Sbjct: 1 MKFDTLGLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVL 60
Query: 61 HKFASSKNKIPVMK 74
+ A+ P+++
Sbjct: 61 EQLAAKPADKPLLR 74
>TIGR_CMR|SO_1501 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 575 (207.5 bits), Expect = 5.3e-71, Sum P(2) = 5.3e-71
Identities = 128/316 (40%), Positives = 189/316 (59%)
Query: 89 ERLRFKPA-QP--RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLL 145
E+L KPA +P R LV+TPTRELA+QV A ++Y ++ +K +++ GG Q + +
Sbjct: 61 EQLAAKPADKPLLRALVMTPTRELAIQVCANIQKYSQFLP-LKTLAVYGGANMNPQRKGV 119
Query: 146 SRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQ 205
+ +IL+ATPGRL D + ++ S + LV+DEADRMLD+GF+ DIEK+ Q
Sbjct: 120 EQGVDILVATPGRLFDIIGQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVHQ 179
Query: 206 TMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLR 265
TMLFSAT V ++ + P VN E + + +++ D K LL L+
Sbjct: 180 TMLFSATYSDAVKQLSHKMLNQPQW--VNVAENTTASTVEQLVYRVDKRRKAELLSELVG 237
Query: 266 DKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVA 325
Q +VF +TK A+ + L + G A HGD Q ARNR L++ + G++++LVA
Sbjct: 238 RNNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLVA 297
Query: 326 TDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIE 385
TDVAARG+D+ A+ V N +LP EDYVHRIGRTGRAG +G A+S V+ A+ + +IE
Sbjct: 298 TDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEIE 357
Query: 386 RFTKQQIPIEVINGFE 401
+++P+ V G+E
Sbjct: 358 ALIGEKLPVTVQPGYE 373
Score = 162 (62.1 bits), Expect = 5.3e-71, Sum P(2) = 5.3e-71
Identities = 31/74 (41%), Positives = 49/74 (66%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F ++GL +L A+ + GY + T VQ+Q IP A+ G+D++ +QTG+GKTAAF LP L
Sbjct: 1 MKFDTLGLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVL 60
Query: 61 HKFASSKNKIPVMK 74
+ A+ P+++
Sbjct: 61 EQLAAKPADKPLLR 74
>UNIPROTKB|Q9KLE2 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000910 "cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 578 (208.5 bits), Expect = 8.6e-71, Sum P(2) = 8.6e-71
Identities = 119/303 (39%), Positives = 181/303 (59%)
Query: 90 RLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNP 149
+L +P+ +V+ PTRELA+QV A + G +K +K + I GG L QM+ L
Sbjct: 87 KLNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGA 146
Query: 150 EILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLF 209
I++ TPGR+ D + +++ +LDEAD ML MGF++D+ I++ P + Q +LF
Sbjct: 147 HIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLF 206
Query: 210 SATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRV 269
SAT+ +V + E ++P + V + + Q V + K+ + LL +
Sbjct: 207 SATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGV-EKDEAMARLLETEET 265
Query: 270 GQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVA 329
++VF T++D + +AD L GF AA LHGD+ Q+ R RT++++++G I ILVATDV
Sbjct: 266 DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVV 325
Query: 330 ARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTK 389
ARG+DVP ITHV+NYD+P E Y+HRIGRTGRAGR G A+ LV + ++ IER T+
Sbjct: 326 ARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTR 385
Query: 390 QQI 392
+
Sbjct: 386 SSM 388
Score = 157 (60.3 bits), Expect = 8.6e-71, Sum P(2) = 8.6e-71
Identities = 30/69 (43%), Positives = 44/69 (63%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L+ +L AL ++G+ PT +Q AIP + GRD + +QTG+GKTAAF LP L
Sbjct: 26 IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 85
Query: 61 HKFASSKNK 69
+K S+ K
Sbjct: 86 NKLNLSQYK 94
>TIGR_CMR|VC_A0804 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0016070 "RNA metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 578 (208.5 bits), Expect = 8.6e-71, Sum P(2) = 8.6e-71
Identities = 119/303 (39%), Positives = 181/303 (59%)
Query: 90 RLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNP 149
+L +P+ +V+ PTRELA+QV A + G +K +K + I GG L QM+ L
Sbjct: 87 KLNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGA 146
Query: 150 EILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLF 209
I++ TPGR+ D + +++ +LDEAD ML MGF++D+ I++ P + Q +LF
Sbjct: 147 HIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLF 206
Query: 210 SATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRV 269
SAT+ +V + E ++P + V + + Q V + K+ + LL +
Sbjct: 207 SATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGV-EKDEAMARLLETEET 265
Query: 270 GQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVA 329
++VF T++D + +AD L GF AA LHGD+ Q+ R RT++++++G I ILVATDV
Sbjct: 266 DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVV 325
Query: 330 ARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTK 389
ARG+DVP ITHV+NYD+P E Y+HRIGRTGRAGR G A+ LV + ++ IER T+
Sbjct: 326 ARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTR 385
Query: 390 QQI 392
+
Sbjct: 386 SSM 388
Score = 157 (60.3 bits), Expect = 8.6e-71, Sum P(2) = 8.6e-71
Identities = 30/69 (43%), Positives = 44/69 (63%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L+ +L AL ++G+ PT +Q AIP + GRD + +QTG+GKTAAF LP L
Sbjct: 26 IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 85
Query: 61 HKFASSKNK 69
+K S+ K
Sbjct: 86 NKLNLSQYK 94
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 561 (202.5 bits), Expect = 1.1e-70, Sum P(2) = 1.1e-70
Identities = 128/330 (38%), Positives = 195/330 (59%)
Query: 77 LNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGM 136
L Q N++ ++LR K + R L+L PTRELA+QV A+ +Y Y+ I ++++ GG+
Sbjct: 60 LEQLNSQYKETGKKLRAK--RIRALILVPTRELAVQVEASISQYAKYLD-ISSMAMYGGV 116
Query: 137 PYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKI 196
Q Q L +IL+ATPGRL+D + ++F L +LVLDEADRMLDMGFI+DI KI
Sbjct: 117 DAQEQKQRLIWGVDILVATPGRLLDMTHQRVLHFDELDMLVLDEADRMLDMGFIDDINKI 176
Query: 197 VDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHK 256
++ P RQ +LFSAT+ V +A+ P+ + + + + + I Q ++ VD +K
Sbjct: 177 IERLPEHRQNLLFSATMSEEVRGLAKRTIHKPVEISIGADKASKPKIEQWLVTVDKA-NK 235
Query: 257 NRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLR 316
+ LL +++ + QA++F TK A + +L G +A +H Q+ R + L + +
Sbjct: 236 SALLSHIITTQNWQQALIFIETKHGAAKLVSQLEKRGIVAESIHSGRAQDIREKILNDFK 295
Query: 317 RGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHA 376
G+IK LVAT +AARG+D+ ++ V NYDLP +DY+HRIGRTGRAG +G A+SLV+
Sbjct: 296 SGKIKFLVATAIAARGLDIGELSRVINYDLPAQVDDYIHRIGRTGRAGASGEAISLVSKD 355
Query: 377 ERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
+ IE I + F KK +
Sbjct: 356 NFRELCAIESRLGHIIERKEFEEFPVKKTV 385
Score = 173 (66.0 bits), Expect = 1.1e-70, Sum P(2) = 1.1e-70
Identities = 30/65 (46%), Positives = 49/65 (75%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F ++ L +L A+ +GYTKPT +Q++AIP ++G+D+I ++QTG+GKTA+F+LP L
Sbjct: 1 MSFSTLKLSTPILNAIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLL 60
Query: 61 HKFAS 65
+ S
Sbjct: 61 EQLNS 65
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 591 (213.1 bits), Expect = 1.8e-70, Sum P(2) = 1.8e-70
Identities = 128/319 (40%), Positives = 197/319 (61%)
Query: 89 ERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRN 148
E++ + + + L++ PTRELALQ+T ++ + + I ++I GG +Q++ L N
Sbjct: 65 EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124
Query: 149 PEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTML 208
I++ATPGRL+DH+ I+ S+L +VLDEAD+ML GF+ DIE I+D TP ++QTML
Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 184
Query: 209 FSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKR 268
FSAT+ + +A+ +P +++V S E I Q ++ D + L + RD+
Sbjct: 185 FSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 244
Query: 269 VGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDV 328
AV+F TK A + D L G+ A LHGD+ Q R R +++ R +I+ L+ATDV
Sbjct: 245 F-LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDV 303
Query: 329 AARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFT 388
AARG+DV +THVFNYD+P+ E Y+HRIGRTGRAG +G A++ V + ++++IE+
Sbjct: 304 AARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 363
Query: 389 KQQIPIEVINGFEPK-KRI 406
I E+I +PK KR+
Sbjct: 364 GAPIQREIIE--QPKIKRV 380
Score = 141 (54.7 bits), Expect = 1.8e-70, Sum P(2) = 1.8e-70
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
NF +G+ E L + G T+ T +QE+AIP +SG+D+I ++TG+GKT AF+LP L
Sbjct: 6 NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 65
Query: 62 KFASSKNKIPVM 73
K + + +
Sbjct: 66 KIDPESSDVQAL 77
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 591 (213.1 bits), Expect = 1.8e-70, Sum P(2) = 1.8e-70
Identities = 128/319 (40%), Positives = 197/319 (61%)
Query: 89 ERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRN 148
E++ + + + L++ PTRELALQ+T ++ + + I ++I GG +Q++ L N
Sbjct: 65 EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124
Query: 149 PEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTML 208
I++ATPGRL+DH+ I+ S+L +VLDEAD+ML GF+ DIE I+D TP ++QTML
Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 184
Query: 209 FSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKR 268
FSAT+ + +A+ +P +++V S E I Q ++ D + L + RD+
Sbjct: 185 FSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 244
Query: 269 VGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDV 328
AV+F TK A + D L G+ A LHGD+ Q R R +++ R +I+ L+ATDV
Sbjct: 245 F-LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDV 303
Query: 329 AARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFT 388
AARG+DV +THVFNYD+P+ E Y+HRIGRTGRAG +G A++ V + ++++IE+
Sbjct: 304 AARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 363
Query: 389 KQQIPIEVINGFEPK-KRI 406
I E+I +PK KR+
Sbjct: 364 GAPIQREIIE--QPKIKRV 380
Score = 141 (54.7 bits), Expect = 1.8e-70, Sum P(2) = 1.8e-70
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
NF +G+ E L + G T+ T +QE+AIP +SG+D+I ++TG+GKT AF+LP L
Sbjct: 6 NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 65
Query: 62 KFASSKNKIPVM 73
K + + +
Sbjct: 66 KIDPESSDVQAL 77
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 585 (211.0 bits), Expect = 2.3e-70, Sum P(2) = 2.3e-70
Identities = 127/316 (40%), Positives = 191/316 (60%)
Query: 88 KERLRFKPAQP--RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLL 145
++ + +P +P R LVLTPTRELA QV + YG + I+ GG+ +Q+ L
Sbjct: 65 QQLISVQPCKPELRALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAY-GGVSTKKQISEL 123
Query: 146 SRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQ 205
+IL+ATPGRL+D + + ++ S+++ LV DEADRMLDMGF +I++I P T+Q
Sbjct: 124 KVGVDILIATPGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTKQ 183
Query: 206 TMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLR 265
T+LFSAT + M++NI +P +++++ K ++ Q + VD K L +L+
Sbjct: 184 TLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGVDAD-RKRELTSFLIG 242
Query: 266 DKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVA 325
+ Q +VFT TK+ AD +A + G + +HGD Q AR + L + G+++ L+A
Sbjct: 243 SRNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRALIA 302
Query: 326 TDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIE 385
TDVAARGID+ ++HV NY+LP EDYVHRIGRT RAG +G AVSLV+ E + IE
Sbjct: 303 TDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGEEWLLTAIE 362
Query: 386 RFTKQQIPIEVINGFE 401
Q+ + + G+E
Sbjct: 363 ELLDIQLLQQWLPGYE 378
Score = 146 (56.5 bits), Expect = 2.3e-70, Sum P(2) = 2.3e-70
Identities = 28/65 (43%), Positives = 42/65 (64%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S L +LKA+ + Y +PT +Q+Q+IP ++ D++ +QTG+GKTAAF LP L
Sbjct: 5 MTFSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPIL 64
Query: 61 HKFAS 65
+ S
Sbjct: 65 QQLIS 69
Score = 40 (19.1 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 60 LHKFASSKNKIPVMKKNLNQN 80
L K A+S NK P+ KKN ++
Sbjct: 381 LTKIANS-NKRPINKKNARKD 400
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 585 (211.0 bits), Expect = 2.3e-70, Sum P(2) = 2.3e-70
Identities = 127/316 (40%), Positives = 191/316 (60%)
Query: 88 KERLRFKPAQP--RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLL 145
++ + +P +P R LVLTPTRELA QV + YG + I+ GG+ +Q+ L
Sbjct: 65 QQLISVQPCKPELRALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAY-GGVSTKKQISEL 123
Query: 146 SRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQ 205
+IL+ATPGRL+D + + ++ S+++ LV DEADRMLDMGF +I++I P T+Q
Sbjct: 124 KVGVDILIATPGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTKQ 183
Query: 206 TMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLR 265
T+LFSAT + M++NI +P +++++ K ++ Q + VD K L +L+
Sbjct: 184 TLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGVDAD-RKRELTSFLIG 242
Query: 266 DKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVA 325
+ Q +VFT TK+ AD +A + G + +HGD Q AR + L + G+++ L+A
Sbjct: 243 SRNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRALIA 302
Query: 326 TDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIE 385
TDVAARGID+ ++HV NY+LP EDYVHRIGRT RAG +G AVSLV+ E + IE
Sbjct: 303 TDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGEEWLLTAIE 362
Query: 386 RFTKQQIPIEVINGFE 401
Q+ + + G+E
Sbjct: 363 ELLDIQLLQQWLPGYE 378
Score = 146 (56.5 bits), Expect = 2.3e-70, Sum P(2) = 2.3e-70
Identities = 28/65 (43%), Positives = 42/65 (64%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S L +LKA+ + Y +PT +Q+Q+IP ++ D++ +QTG+GKTAAF LP L
Sbjct: 5 MTFSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPIL 64
Query: 61 HKFAS 65
+ S
Sbjct: 65 QQLIS 69
Score = 40 (19.1 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 60 LHKFASSKNKIPVMKKNLNQN 80
L K A+S NK P+ KKN ++
Sbjct: 381 LTKIANS-NKRPINKKNARKD 400
>UNIPROTKB|Q65N62 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
PATRIC:18946609 ProtClustDB:CLSK886742
BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
Length = 487
Score = 602 (217.0 bits), Expect = 1.2e-69, Sum P(2) = 1.2e-69
Identities = 128/306 (41%), Positives = 189/306 (61%)
Query: 92 RFKPAQPRM--LVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNP 149
+ P P + +V+ PTRELA+QV+ + G K+ + + I GG RQ++ L +NP
Sbjct: 64 KINPESPNIQAIVIAPTRELAIQVSEELYKIG-QDKRARVLPIYGGQDIGRQIRALKKNP 122
Query: 150 EILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLF 209
I++ TPGRL+DH+N + + +VLDEAD ML+MGFI DIE I+ P QT+LF
Sbjct: 123 HIIVGTPGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQTLLF 182
Query: 210 SATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLR--DK 267
SAT+ + +AE +P +KV + E NI Q L V H+ + D L R D
Sbjct: 183 SATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEV----HERKKFDTLTRLLDI 238
Query: 268 RVGQ-AVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVAT 326
+ + A+VF TKR D + + LN+ G+ A +HGDL Q R L ++G I++LVAT
Sbjct: 239 QSPELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVAT 298
Query: 327 DVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIER 386
DVAARG+D+ +THV+N+D+P+ PE YVHRIGRTGRAG+ G A++ + E+ ++ IE+
Sbjct: 299 DVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIEQ 358
Query: 387 FTKQQI 392
TK+++
Sbjct: 359 TTKRKM 364
Score = 122 (48.0 bits), Expect = 1.2e-69, Sum P(2) = 1.2e-69
Identities = 23/62 (37%), Positives = 40/62 (64%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F+ L + KA+ ++G+ + T +Q Q IP ++ +D+I +QTG+GKTAAF +P +
Sbjct: 3 ITFQDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLV 62
Query: 61 HK 62
K
Sbjct: 63 EK 64
>UNIPROTKB|Q9KU63 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 OMA:PLAMDQR KO:K05590 ProtClustDB:PRK11192 PIR:F82295
RefSeq:NP_230309.1 ProteinModelPortal:Q9KU63 DNASU:2615450
GeneID:2615450 KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 559 (201.8 bits), Expect = 8.7e-69, Sum P(2) = 8.7e-69
Identities = 121/316 (38%), Positives = 195/316 (61%)
Query: 92 RFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEI 151
R K R+L+LTPTRELA+QV + + + +I GG+ Y +L+ +I
Sbjct: 70 RRKAGPARILILTPTRELAMQVAEQAQALAKNTR-LNIFTITGGVQYQEHADILATTQDI 128
Query: 152 LLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSA 211
++ATPGRL++++++ + + ++ L+LDEADRMLDMGF ++++ +QT+LFSA
Sbjct: 129 VVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQTLLFSA 188
Query: 212 TLDGI-VGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVG 270
TL+G V ++ KDP + +++K I+Q DD+ HK LL +L ++
Sbjct: 189 TLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKKILTEQ-AE 247
Query: 271 QAVVFTATK-RDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVA 329
+++VF T+ R AD+ A+ L + A + G++ Q+ RN + R G + IL+ATDVA
Sbjct: 248 RSIVFLKTRERLADLRAE-LEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLATDVA 306
Query: 330 ARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTK 389
ARGIDVP I+HV N+DLP+ + Y+HRIGRTGRAG+ G A+SLV ++ + ++ER+ K
Sbjct: 307 ARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVERYIK 366
Query: 390 QQIPIEVINGFEPKKR 405
+++ I+G PK +
Sbjct: 367 EEVKERFIDGLRPKHK 382
Score = 157 (60.3 bits), Expect = 8.7e-69, Sum P(2) = 8.7e-69
Identities = 28/58 (48%), Positives = 46/58 (79%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
F + L ++L+A+ ++G+++PT VQ +AIP A+ GRD++ S+ TG+GKTAAF++PAL
Sbjct: 5 FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPAL 62
Score = 44 (20.5 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 377 ERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRYR 414
ER+ + E K QIP I G P+ R SR+R
Sbjct: 257 ERLADLRAE-LEKAQIPCAWIQGEMPQDRRNNAISRFR 293
>TIGR_CMR|VC_0660 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003676 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
KO:K05590 ProtClustDB:PRK11192 PIR:F82295 RefSeq:NP_230309.1
ProteinModelPortal:Q9KU63 DNASU:2615450 GeneID:2615450
KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 559 (201.8 bits), Expect = 8.7e-69, Sum P(2) = 8.7e-69
Identities = 121/316 (38%), Positives = 195/316 (61%)
Query: 92 RFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEI 151
R K R+L+LTPTRELA+QV + + + +I GG+ Y +L+ +I
Sbjct: 70 RRKAGPARILILTPTRELAMQVAEQAQALAKNTR-LNIFTITGGVQYQEHADILATTQDI 128
Query: 152 LLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSA 211
++ATPGRL++++++ + + ++ L+LDEADRMLDMGF ++++ +QT+LFSA
Sbjct: 129 VVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQTLLFSA 188
Query: 212 TLDGI-VGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVG 270
TL+G V ++ KDP + +++K I+Q DD+ HK LL +L ++
Sbjct: 189 TLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKKILTEQ-AE 247
Query: 271 QAVVFTATK-RDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVA 329
+++VF T+ R AD+ A+ L + A + G++ Q+ RN + R G + IL+ATDVA
Sbjct: 248 RSIVFLKTRERLADLRAE-LEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLATDVA 306
Query: 330 ARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTK 389
ARGIDVP I+HV N+DLP+ + Y+HRIGRTGRAG+ G A+SLV ++ + ++ER+ K
Sbjct: 307 ARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVERYIK 366
Query: 390 QQIPIEVINGFEPKKR 405
+++ I+G PK +
Sbjct: 367 EEVKERFIDGLRPKHK 382
Score = 157 (60.3 bits), Expect = 8.7e-69, Sum P(2) = 8.7e-69
Identities = 28/58 (48%), Positives = 46/58 (79%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
F + L ++L+A+ ++G+++PT VQ +AIP A+ GRD++ S+ TG+GKTAAF++PAL
Sbjct: 5 FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPAL 62
Score = 44 (20.5 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 377 ERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRYR 414
ER+ + E K QIP I G P+ R SR+R
Sbjct: 257 ERLADLRAE-LEKAQIPCAWIQGEMPQDRRNNAISRFR 293
>SGD|S000005056 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
"nuclear polyadenylation-dependent mRNA catabolic process"
evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
Length = 546
Score = 586 (211.3 bits), Expect = 1.4e-68, Sum P(2) = 1.4e-68
Identities = 136/306 (44%), Positives = 182/306 (59%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P +LVL PTRELA+Q+ ++G + +I+ + GG+P +Q++ LSR EI++ATPG
Sbjct: 187 PIVLVLAPTRELAVQIQTECSKFG-HSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPG 245
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLID + GK N + LVLDEADRMLDMGF I KIVD RQT+++SAT V
Sbjct: 246 RLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV 305
Query: 218 GNMAENITKDPLILKVNSIE-KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQ--AVV 274
+A + DP+ ++V S+E NITQ + V D ++RL YL + + ++
Sbjct: 306 KQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYLETASQDNEYKTLI 365
Query: 275 FTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGID 334
F +TKR D I L G+ A +HGD Q R+ L+ R GR I+VATDVAARGID
Sbjct: 366 FASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGID 425
Query: 335 VPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAER-MNIKKIE--RFTKQQ 391
V I +V NYD+P EDYVHRIGRTGRAG G A+S + + K I R Q
Sbjct: 426 VKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGAKLISIMREANQN 485
Query: 392 IPIEVI 397
IP E++
Sbjct: 486 IPPELL 491
Score = 128 (50.1 bits), Expect = 1.4e-68, Sum P(2) = 1.4e-68
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
F G + VL + G+ KPTG+Q Q P A+SGRD++ + TGSGKT ++ LP +
Sbjct: 115 FDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGI 172
Score = 42 (19.8 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 369 AVSLVNHAERMNIKKIERFTKQQIP--IEVINGFEPKKRIRTY 409
A +N ++ + +E I +EV++ FE + R+ Y
Sbjct: 309 AADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKY 351
>SGD|S000005730 [details] [associations]
symbol:DED1 "ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA
helicase" species:4932 "Saccharomyces cerevisiae" [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IC]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IMP;IDA]
[GO:0033592 "RNA strand annealing activity" evidence=IDA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005730 GO:GO:0005524 GO:GO:0005737
EMBL:BK006948 GO:GO:0006413 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4 OMA:GNWANAN
EMBL:X57278 EMBL:Z75110 EMBL:X03245 PIR:S13653 RefSeq:NP_014847.3
RefSeq:NP_014849.3 ProteinModelPortal:P06634 SMR:P06634
DIP:DIP-5820N IntAct:P06634 MINT:MINT-697363 STRING:P06634
PaxDb:P06634 PeptideAtlas:P06634 EnsemblFungi:YOR204W GeneID:854379
GeneID:854381 KEGG:sce:YOR204W KEGG:sce:YOR206W CYGD:YOR204w
KO:K14833 SABIO-RK:P06634 NextBio:976514 Genevestigator:P06634
GermOnline:YOR204W GO:GO:0033592 Uniprot:P06634
Length = 604
Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
Identities = 161/386 (41%), Positives = 225/386 (58%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F S L L+L+ + +TKPT VQ+ ++P +GRDL+ +QTGSGKT F+ P L +
Sbjct: 144 FTSPPLDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSE 203
Query: 63 -FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
F + + P ++ Y K A P +++ PTRELA Q+ +++
Sbjct: 204 SFKTGPSPQP-------ESQGSFYQRK-------AYPTAVIMAPTRELATQIFDEAKKF- 248
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
Y +KA + GG P Q++ + R ++L+ATPGRL D + GKI+ ++++ LVLDEA
Sbjct: 249 TYRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEA 308
Query: 182 DRMLDMGFINDIEKIV---DATPV-TRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
DRMLDMGF I IV D TPV RQT++FSAT + ++A + D + L V +
Sbjct: 309 DRMLDMGFEPQIRHIVEDCDMTPVGERQTLMFSATFPADIQHLARDFLSDYIFLSVGRVG 368
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+NITQ +L+V++ K+ LLD LL G ++F TKR AD + D L + F A
Sbjct: 369 STSENITQKVLYVENQDKKSALLD-LLSASTDGLTLIFVETKRMADQLTDFLIMQNFRAT 427
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
+HGD Q+ R R L R G +LVAT VAARG+D+P +THV NYDLP +DYVHRI
Sbjct: 428 AIHGDRTQSERERALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRI 487
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKK 383
GRTGRAG G A + N +E NI K
Sbjct: 488 GRTGRAGNTGLATAFFN-SENSNIVK 512
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 588 (212.0 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
Identities = 139/325 (42%), Positives = 191/325 (58%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P +LVL PTRELA+Q+ ++G +I+ + GG P Q++ L+R EI +ATPG
Sbjct: 201 PIVLVLAPTRELAVQIQTECSKFGK-SSRIRNTCVYGGAPKGPQIRDLARGVEICIATPG 259
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLID + +GK N + LVLDEADRMLDMGF I KIVD RQT+++SAT V
Sbjct: 260 RLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV 319
Query: 218 GNMAENITKDPLILKVNSIEKKQKN-ITQSILFVDDILHKNRLLDYL---LRDKRVGQAV 273
+ + DP+ + + S+E + ITQ + +D+ ++RL+ +L L +K + +
Sbjct: 320 QQLTRDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKRDRLVKHLESALNEKD-NKIL 378
Query: 274 VFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGI 333
VF +TKR D I L G+ A +HGD QN R+ L+ R+G+ I+VATDVAARGI
Sbjct: 379 VFASTKRTCDEITTYLRSDGWPALAIHGDKEQNERDWVLDEFRKGKTSIMVATDVAARGI 438
Query: 334 DVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERM---NIKKIERFTKQ 390
DV ITHV NYD+P EDYVHRIGRTGR G +G A+S ++ KI R Q
Sbjct: 439 DVKGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEGNSKLGGDLCKIMREANQ 498
Query: 391 QIPIEVINGFEPKKRIRTYYSRYRF 415
+P E + F+ R+Y S RF
Sbjct: 499 TVPPE-LQRFDR----RSYGSHMRF 518
Score = 123 (48.4 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
F G + VL+ + G+ KPT +Q Q P A+SGRD+I + TGSGKT ++ LP++
Sbjct: 129 FDEAGFPDYVLQEVKDQGFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSI 186
Score = 41 (19.5 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 356 RIGRTGRAGRNGF 368
R GR GR GR G+
Sbjct: 528 RGGRGGRGGRGGY 540
Score = 38 (18.4 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 356 RIGRTGRAGRNG 367
R GR GR GR G
Sbjct: 525 RGGRGGRGGRGG 536
Score = 38 (18.4 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 356 RIGRTGRAGRNG 367
R GR GR GR G
Sbjct: 522 RGGRGGRGGRGG 533
Score = 38 (18.4 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 30/122 (24%), Positives = 51/122 (41%)
Query: 261 DYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGR- 319
D++L + R G+ + AT D+ A +++ G + ++ D+ N + R GR
Sbjct: 414 DWVLDEFRKGKTSIMVAT----DVAARGIDVKG-ITHVINYDMPGNIEDYVHRIGRTGRG 468
Query: 320 ----IKILVATDVAAR-GIDVPAITHVFNYDLP----KFPE-DYVHRI----GRTGRAGR 365
I T+ ++ G D+ I N +P +F Y + GR GR GR
Sbjct: 469 GASGTAISFFTEGNSKLGGDLCKIMREANQTVPPELQRFDRRSYGSHMRFGQGRGGRGGR 528
Query: 366 NG 367
G
Sbjct: 529 GG 530
>UNIPROTKB|Q8EI96 [details] [associations]
symbol:srmB "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 578 (208.5 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
Identities = 126/313 (40%), Positives = 189/313 (60%)
Query: 97 QPRMLVLTPTRELALQVTAATERYGLYMKKIKAISIL---GGMPYLRQMQLLSRNPEILL 153
Q R+L+LTPTRELA Q+ RY ++ + ++I GG+PY Q + L N +IL+
Sbjct: 73 QARVLILTPTRELASQI----HRYACHLATDQGLNIAIITGGVPYAPQEEALKGNIDILV 128
Query: 154 ATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATL 213
ATPGRL+++++ GK + + IL++DEADRMLDMGF ++ I +Q MLFSATL
Sbjct: 129 ATPGRLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQNMLFSATL 188
Query: 214 DGI-VGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQA 272
+G V A + DP+ + V++ K++ I Q I DD HK LL +LL+ + V +A
Sbjct: 189 EGSGVIRFAREVLNDPIEIDVDAPRKEKAKIHQWIHLADDKDHKFALLCHLLKQEDVKRA 248
Query: 273 VVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARG 332
+VF T+ + +L +G A + GD+ Q R + L +G + +L+ATDVAARG
Sbjct: 249 IVFVKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVLLATDVAARG 308
Query: 333 IDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQI 392
ID+ I+HV N+D+P+ + Y+HRIGRTGRAG G A+SL + + KIER+ +Q +
Sbjct: 309 IDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVGKIERYIEQPL 368
Query: 393 PIEVINGFEPKKR 405
+I PK +
Sbjct: 369 KRRIIEELRPKHK 381
Score = 133 (51.9 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
Identities = 24/60 (40%), Positives = 41/60 (68%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+ L +L++L +G+ PT +Q++ +P A+ RD++ + TG+GKTA+F+LPAL
Sbjct: 1 MQFEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPAL 60
>TIGR_CMR|SO_0947 [details] [associations]
symbol:SO_0947 "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 578 (208.5 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
Identities = 126/313 (40%), Positives = 189/313 (60%)
Query: 97 QPRMLVLTPTRELALQVTAATERYGLYMKKIKAISIL---GGMPYLRQMQLLSRNPEILL 153
Q R+L+LTPTRELA Q+ RY ++ + ++I GG+PY Q + L N +IL+
Sbjct: 73 QARVLILTPTRELASQI----HRYACHLATDQGLNIAIITGGVPYAPQEEALKGNIDILV 128
Query: 154 ATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATL 213
ATPGRL+++++ GK + + IL++DEADRMLDMGF ++ I +Q MLFSATL
Sbjct: 129 ATPGRLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQNMLFSATL 188
Query: 214 DGI-VGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQA 272
+G V A + DP+ + V++ K++ I Q I DD HK LL +LL+ + V +A
Sbjct: 189 EGSGVIRFAREVLNDPIEIDVDAPRKEKAKIHQWIHLADDKDHKFALLCHLLKQEDVKRA 248
Query: 273 VVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARG 332
+VF T+ + +L +G A + GD+ Q R + L +G + +L+ATDVAARG
Sbjct: 249 IVFVKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVLLATDVAARG 308
Query: 333 IDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQI 392
ID+ I+HV N+D+P+ + Y+HRIGRTGRAG G A+SL + + KIER+ +Q +
Sbjct: 309 IDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVGKIERYIEQPL 368
Query: 393 PIEVINGFEPKKR 405
+I PK +
Sbjct: 369 KRRIIEELRPKHK 381
Score = 133 (51.9 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
Identities = 24/60 (40%), Positives = 41/60 (68%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+ L +L++L +G+ PT +Q++ +P A+ RD++ + TG+GKTA+F+LPAL
Sbjct: 1 MQFEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPAL 60
>CGD|CAL0004832 [details] [associations]
symbol:orf19.7392 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:2000765 "regulation of cytoplasmic translation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004832 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:AACQ01000066 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K11594 RefSeq:XP_716633.1
ProteinModelPortal:Q5A4E2 SMR:Q5A4E2 PRIDE:Q5A4E2 GeneID:3641752
KEGG:cal:CaO19.7392 Uniprot:Q5A4E2
Length = 672
Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
Identities = 161/399 (40%), Positives = 238/399 (59%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F + L EL+++ + +TKPT VQ+ ++P +GRDL+ +QTGSGKT F+ P L
Sbjct: 187 SFTAPPLDELLVENIQLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLS 246
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ + K PV + N +++K+Y P +LV+ PTREL Q+ ++++
Sbjct: 247 E-SYMKGPAPVPESNGAFSSHKVY------------PTILVMAPTRELVSQIYEESKKFS 293
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
Y ++A + GG +QM+ + R ++L+ATPGRL D ++ GK++ ++++ LVLDEA
Sbjct: 294 -YRSWVRACVVYGGADIGQQMRNMDRGCDLLVATPGRLKDLLDRGKVSLANIRYLVLDEA 352
Query: 182 DRMLDMGFINDIEKIVDAT--PVT--RQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
DRMLDMGF I IV+ P RQT++FSAT + +A + KD + L V +
Sbjct: 353 DRMLDMGFEPQIRYIVEECDMPAVKDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVG 412
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+NITQ IL+V+D K+ +LD L ++ G +VFT TKR AD +AD L GF A
Sbjct: 413 STSENITQKILYVEDDEKKSVILDLLSANEN-GLTIVFTETKRMADNLADYLYDQGFPAT 471
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
+HGD Q R + L + G ILVAT VAARG+D+P ++HV NYDLP +DYVHRI
Sbjct: 472 AIHGDRSQYEREKALAAFKNGAAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRI 531
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKK-IERFTK--QQIP 393
GRTGRAG G A + N + +K IE ++ Q++P
Sbjct: 532 GRTGRAGNVGIATAFFNRNNKNVVKGLIELLSEANQEVP 570
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 557 (201.1 bits), Expect = 6.0e-68, Sum P(2) = 6.0e-68
Identities = 121/309 (39%), Positives = 182/309 (58%)
Query: 99 RMLVLTPTRELALQVTAATERYGLYMK-KIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
R LVL PTRELA QV + Y + ++K ++ GG+ QMQ L ++L+ATPG
Sbjct: 85 RCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAGADVLVATPG 144
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RL+D + S + + + VLDEADRML +GF ++E+++ A P +QT+LFSAT V
Sbjct: 145 RLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAALPRQKQTLLFSATFPEEV 204
Query: 218 GNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTA 277
+ + PL + S +++ I Q ++ V+ K LL +L++ + QA++F +
Sbjct: 205 RALTTKLLHQPLEYHLQS--EQESTIEQRVITVNRE-QKTALLAHLIKQHQWSQALIFVS 261
Query: 278 TKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPA 337
K + +A +L+ G A HGD Q AR R L+ + G I +L+ATD+AARGID+
Sbjct: 262 AKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARGIDIDK 321
Query: 338 ITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVI 397
+ V N+DLP+ P DY+HRIGR+GRAG G AV+L++H E + IE+ K ++ E I
Sbjct: 322 LPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHFGVIEKKNKIKLVREQI 381
Query: 398 NGFEPKKRI 406
GFE I
Sbjct: 382 PGFEANAEI 390
Score = 151 (58.2 bits), Expect = 6.0e-68, Sum P(2) = 6.0e-68
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F +G+ + L ++GY PT VQ IPA +SGRD++ + TGSGKTAAF LP L
Sbjct: 10 SFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQ 69
Query: 62 KFASSKN 68
+ + +K+
Sbjct: 70 RLSEAKS 76
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 557 (201.1 bits), Expect = 6.0e-68, Sum P(2) = 6.0e-68
Identities = 121/309 (39%), Positives = 182/309 (58%)
Query: 99 RMLVLTPTRELALQVTAATERYGLYMK-KIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
R LVL PTRELA QV + Y + ++K ++ GG+ QMQ L ++L+ATPG
Sbjct: 85 RCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAGADVLVATPG 144
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RL+D + S + + + VLDEADRML +GF ++E+++ A P +QT+LFSAT V
Sbjct: 145 RLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAALPRQKQTLLFSATFPEEV 204
Query: 218 GNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTA 277
+ + PL + S +++ I Q ++ V+ K LL +L++ + QA++F +
Sbjct: 205 RALTTKLLHQPLEYHLQS--EQESTIEQRVITVNRE-QKTALLAHLIKQHQWSQALIFVS 261
Query: 278 TKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPA 337
K + +A +L+ G A HGD Q AR R L+ + G I +L+ATD+AARGID+
Sbjct: 262 AKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARGIDIDK 321
Query: 338 ITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVI 397
+ V N+DLP+ P DY+HRIGR+GRAG G AV+L++H E + IE+ K ++ E I
Sbjct: 322 LPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHFGVIEKKNKIKLVREQI 381
Query: 398 NGFEPKKRI 406
GFE I
Sbjct: 382 PGFEANAEI 390
Score = 151 (58.2 bits), Expect = 6.0e-68, Sum P(2) = 6.0e-68
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F +G+ + L ++GY PT VQ IPA +SGRD++ + TGSGKTAAF LP L
Sbjct: 10 SFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQ 69
Query: 62 KFASSKN 68
+ + +K+
Sbjct: 70 RLSEAKS 76
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 542 (195.9 bits), Expect = 1.6e-67, Sum P(2) = 1.6e-67
Identities = 124/309 (40%), Positives = 178/309 (57%)
Query: 88 KERLRFKPAQPRMLVLTPTRELALQVTAATERY--GLYMKKIKAISILGGMPYLRQMQLL 145
+ ++ K R L+LTPTRELA Q+ + Y GL +K K + GG+ Q+ +
Sbjct: 66 RNKIDIKAKSTRSLILTPTRELASQIMQNIDDYSDGLGLKT-KVV--YGGVGRQAQVDSI 122
Query: 146 SRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQ 205
+IL+ATPGRL+D + +G INF L++ VLDEAD MLDMGF D++ I+ P +RQ
Sbjct: 123 ELGLDILVATPGRLLDLIETGDINFKALEVFVLDEADTMLDMGFFKDVQSIISKLPKSRQ 182
Query: 206 TMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLR 265
T+LFSAT+ + +AE I DP +++ + + QS+ +D +K LL +L
Sbjct: 183 TLLFSATMPAEIEILAEAILTDPTKIQITAETVTIDLVNQSVYHLDKS-NKVPLLFNILT 241
Query: 266 DKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVA 325
+ ++F TK ADII L + AA LH Q R L+N + +++LVA
Sbjct: 242 KADYEKVLIFCKTKYGADIIVKALEKASITAASLHSGKTQAVREEALQNFKDSTLRVLVA 301
Query: 326 TDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIE 385
TDVAARGIDV IT V NY+LP+ P +Y+HRIGRT RAG++G A+S + + IE
Sbjct: 302 TDVAARGIDVDNITLVINYNLPEDPRNYIHRIGRTARAGKSGMAISFAVENDIRQLTNIE 361
Query: 386 RFTKQQIPI 394
Q IP+
Sbjct: 362 NSIGQVIPV 370
Score = 162 (62.1 bits), Expect = 1.6e-67, Sum P(2) = 1.6e-67
Identities = 33/74 (44%), Positives = 50/74 (67%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
FK+ L E ++ + GY +PT +Q++ IPA I+G DL+ +QTG+GKTAAF LP ++K
Sbjct: 4 FKAFSLLESIIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIINK 63
Query: 63 FASSKNKIPVMKKN 76
F +NKI + K+
Sbjct: 64 FG--RNKIDIKAKS 75
>POMBASE|SPCC1795.11 [details] [associations]
symbol:sum3 "translation initiation RNA helicase Sum3"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=IMP] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IMP] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0031047
"gene silencing by RNA" evidence=IDA] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IGI] [GO:0071470
"cellular response to osmotic stress" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC1795.11 GO:GO:0005829 GO:GO:0005524
GO:GO:0007346 GO:GO:0051301 GO:GO:0007067 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0071470 GO:GO:0010628 GO:GO:0031047
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0031137 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0002183 HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4
OMA:KYERGGN EMBL:AF025536 EMBL:AF084222 EMBL:AB012389 EMBL:AJ237697
EMBL:AB027871 PIR:T43543 RefSeq:NP_588033.1
ProteinModelPortal:O13370 SMR:O13370 IntAct:O13370
MINT:MINT-4666622 STRING:O13370 PRIDE:O13370
EnsemblFungi:SPCC1795.11.1 GeneID:2538689 KEGG:spo:SPCC1795.11
NextBio:20799875 Uniprot:O13370
Length = 636
Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
Identities = 158/387 (40%), Positives = 225/387 (58%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH- 61
F S L+ +L+ + GYT+PT VQ+ +IP SGRDL+ +QTGSGKTA F+ P L
Sbjct: 171 FTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSL 230
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
F +PV +Q+ Y R + A P L+L PTREL Q+ + ++
Sbjct: 231 AFDKGPAAVPV-----DQDAGMGY------RPRKAYPTTLILAPTRELVCQIHEESRKF- 278
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
Y ++ ++ GG Q++ + + ++L ATPGRL+D ++ G+I+ ++++ LVLDEA
Sbjct: 279 CYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEA 338
Query: 182 DRMLDMGFINDIEKIVDATPVT----RQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
DRMLDMGF I IV+ +T RQT++FSAT + +A + KD + L V +
Sbjct: 339 DRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVG 398
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+NITQ ++ V+D ++ LLD L G ++F TKR AD + D L S F A
Sbjct: 399 STSENITQKVVHVEDSEKRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPAT 458
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
+HGD Q R R LE R GR I+VAT VA+RG+D+P +THV NYDLP +DYVHRI
Sbjct: 459 SIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRI 518
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKI 384
GRTGRAG G AV+ N + K++
Sbjct: 519 GRTGRAGNTGQAVAFFNRNNKGIAKEL 545
>SGD|S000006040 [details] [associations]
symbol:DBP1 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000006040 GO:GO:0005524
GO:GO:0005737 GO:GO:0006413 EMBL:BK006949 GO:GO:0003743 EMBL:U43503
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:X55993 PIR:S62003 RefSeq:NP_015206.1 ProteinModelPortal:P24784
SMR:P24784 DIP:DIP-2576N IntAct:P24784 MINT:MINT-426870
STRING:P24784 PaxDb:P24784 EnsemblFungi:YPL119C GeneID:855984
KEGG:sce:YPL119C CYGD:YPL119c GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN OrthoDB:EOG4XPTQ4
NextBio:980825 Genevestigator:P24784 GermOnline:YPL119C
Uniprot:P24784
Length = 617
Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
Identities = 159/388 (40%), Positives = 221/388 (56%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
++F S L EL+++ + +TKPT VQ+ +IP GRDL+ +QTGSGKT F+ P
Sbjct: 154 LDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLF 213
Query: 61 HK-FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
+ F S + +P + Y+ K P LVL PTRELA Q+ +
Sbjct: 214 TELFRSGPSPVP-------EKAQSFYSRK-------GYPSALVLAPTRELATQIFEEARK 259
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
+ Y ++ + GG P QM+ + R ++L+ATPGRL D + GK++ ++++ LVLD
Sbjct: 260 F-TYRSWVRPCVVYGGAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLD 318
Query: 180 EADRMLDMGFINDIEKIVDATPV----TRQTMLFSATLDGIVGNMAENITKDPLILKVNS 235
EADRMLDMGF I IV+ + RQT++FSAT + ++A + + + L V
Sbjct: 319 EADRMLDMGFEPQIRHIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGR 378
Query: 236 IEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFL 295
+ +NITQ IL+VDD+ K+ LLD LL + G ++F TKR AD + D L + F
Sbjct: 379 VGSTSENITQRILYVDDMDKKSALLD-LLSAEHKGLTLIFVETKRMADQLTDFLIMQNFK 437
Query: 296 AAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVH 355
A +HGD Q R R L + ILVAT VAARG+D+P +THV NYDLP +DYVH
Sbjct: 438 ATAIHGDRTQAERERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVH 497
Query: 356 RIGRTGRAGRNGFAVSLVNHAERMNIKK 383
RIGRTGRAG G A S N + NI K
Sbjct: 498 RIGRTGRAGNTGVATSFFN-SNNQNIVK 524
>ZFIN|ZDB-GENE-080204-77 [details] [associations]
symbol:ddx43 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
43" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
ZFIN:ZDB-GENE-080204-77 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ
EMBL:BX890626 EMBL:CR354610 IPI:IPI00886666 UniGene:Dr.41756
Ensembl:ENSDART00000101479 OMA:IDITSIT Uniprot:B8A609
Length = 719
Score = 567 (204.7 bits), Expect = 1.1e-66, Sum P(2) = 1.1e-66
Identities = 134/312 (42%), Positives = 196/312 (62%)
Query: 92 RFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEI 151
R K P MLVLTPTRELALQ+ A +Y Y K K+I I GG Q+++++ +I
Sbjct: 347 RDKRNGPGMLVLTPTRELALQIEAECNKYS-Y-KGFKSICIYGGGDRNAQIKVVTSGVDI 404
Query: 152 LLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIV-DATPVTRQTMLFS 210
++ATPGRL D + IN + LVLDEADRMLDMGF I KI+ D P RQT++ S
Sbjct: 405 VIATPGRLNDLQMNELINLRSITYLVLDEADRMLDMGFEPQIMKIILDIRP-DRQTVMTS 463
Query: 211 ATLDGIVGNMAENITKDPLILKVNSIEKKQKN-ITQSILFVDDILHKNRLLDYLLRDKRV 269
AT V +A++ KDP+++ V +++ N + Q++LFV + K+ + D++ R + +
Sbjct: 464 ATWPPGVRRLAKSYLKDPMMVYVGTLDLAAVNTVQQTVLFVQEDEKKDYVFDFIHRMEPL 523
Query: 270 GQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVA 329
+ ++F K AD ++ L + G LHGD Q R L++ + GR++ILVATD+A
Sbjct: 524 DKVLIFVGKKLKADDLSSDLCLQGIAVQSLHGDREQCDREEALQDFKDGRVRILVATDLA 583
Query: 330 ARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAE-RMNIKKI---E 385
+RG+DV ITHVFNYD P+ E+YVHR+GRTGRAGR+G +V+LV + R+ + I E
Sbjct: 584 SRGLDVHDITHVFNYDFPRNVEEYVHRVGRTGRAGRSGESVTLVTREDWRVAAELITILE 643
Query: 386 RFTKQQIPIEVI 397
R + Q +P E++
Sbjct: 644 R-SGQDVPEELV 654
Score = 129 (50.5 bits), Expect = 1.1e-66, Sum P(2) = 1.1e-66
Identities = 24/51 (47%), Positives = 38/51 (74%)
Query: 12 VLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPA-LH 61
+++ +V+VG+ KPT +Q QA P ++G DLI +QTG+GKT A++LP +H
Sbjct: 289 IMENIVRVGFKKPTPIQSQAWPVVLNGIDLIGIAQTGTGKTLAYLLPGFIH 339
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 550 (198.7 bits), Expect = 2.3e-66, Sum P(2) = 2.3e-66
Identities = 114/302 (37%), Positives = 186/302 (61%)
Query: 101 LVLTPTRELALQVTAATERYGLYMK-KIKAISILGGMPYLRQMQLLSRNPEILLATPGRL 159
LVL PTRELA QV + + Y ++ +IK +++ GG+ QM L +IL+ATPGRL
Sbjct: 89 LVLVPTRELAKQVADSIKSYAVHFNGEIKTLAVFGGVSVNIQMLALRGGVDILVATPGRL 148
Query: 160 IDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGN 219
+D ++S I ++ LVLDEADRML +GF ++ ++ TP +QT+LFSAT V
Sbjct: 149 LDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELTALLALTPKKKQTLLFSATFPEQVTT 208
Query: 220 MAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATK 279
+ + + +P+ +++ S + + Q + V+ K +L +L++ ++ QA++F K
Sbjct: 209 LTQELLNNPIEIQLQSADAS--TLVQRVFTVNKG-EKTAVLAHLIQQEQWRQALIFVNAK 265
Query: 280 RDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAIT 339
+ +A++L G AA HGD Q+ R+R L+ + G I++L+ATD+AARG+D+ +
Sbjct: 266 HHCEHLAEKLAKRGITAAVFHGDKGQSERSRVLDGFKAGDIEVLIATDIAARGLDIEKLP 325
Query: 340 HVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVING 399
V N++LP+ P DY+HRIGR+GRAG G A+SL++H + + IE+ K ++ E + G
Sbjct: 326 VVINFNLPRSPSDYMHRIGRSGRAGEVGLAISLIDHEDYHHFSVIEKKNKFRLKREQVEG 385
Query: 400 FE 401
FE
Sbjct: 386 FE 387
Score = 143 (55.4 bits), Expect = 2.3e-66, Sum P(2) = 2.3e-66
Identities = 29/60 (48%), Positives = 39/60 (65%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F +GL +L L ++ Y +PT +Q +AIP+ +GRDLI + TGSGKTA F LP L K
Sbjct: 10 FTELGLITPLLARLAELEYHQPTPIQARAIPSVFAGRDLIAGANTGSGKTATFALPMLQK 69
>UNIPROTKB|F1NIX1 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AADN02011031
IPI:IPI00822944 Ensembl:ENSGALT00000026172 ArrayExpress:F1NIX1
Uniprot:F1NIX1
Length = 638
Score = 651 (234.2 bits), Expect = 6.1e-66, Sum P(2) = 6.1e-66
Identities = 156/402 (38%), Positives = 222/402 (55%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F + + E+++ + YT+PT VQ+ AIP RDL+ +QTGSGKTAAF+LP L
Sbjct: 159 SFSDVDMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 218
Query: 62 K-FASSK-NKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
+ +A + + MK+N K Y P LVL PTRELA+Q+ +
Sbjct: 219 QIYADGPGDALRAMKENGRYGRRKQY------------PISLVLAPTRELAVQIYEEARK 266
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
+ Y +++ + GG +Q++ L R +L+ATPGRL+D M GKI + LVLD
Sbjct: 267 FA-YRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 325
Query: 180 EADRMLDMGFINDIEKIV--DATPV--TRQTMLFSATLDGIVGNMAENITKDPLILKVNS 235
EADRMLDMGF I +IV D P R TM+FSAT + +A + + + L V
Sbjct: 326 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 385
Query: 236 IEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFL 295
+ +NITQ +++V+++ ++ LLD L + +VF TK+ AD + D L G+
Sbjct: 386 VGSTSENITQKVVWVEELDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYA 445
Query: 296 AAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVH 355
+HGD Q R L R G+ ILVAT VAARG+D+ + HV N+DLP E+YVH
Sbjct: 446 CTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVH 505
Query: 356 RIGRTGRAGRNGFAVSLVNHAERMNIKK--IERFT--KQQIP 393
RIGRTGR G G A S N +NI K ++ KQ++P
Sbjct: 506 RIGRTGRVGNLGLATSFFNE-RNINITKDLLDLLVEAKQEVP 546
Score = 38 (18.4 bits), Expect = 6.1e-66, Sum P(2) = 6.1e-66
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 358 GRTGRAGRNGF 368
GRTG +G GF
Sbjct: 600 GRTGGSGSRGF 610
>ZFIN|ZDB-GENE-030131-1565 [details] [associations]
symbol:ddx3 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 3" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-1565 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
KO:K11594 HOVERGEN:HBG015893 EMBL:BX545856 IPI:IPI00639693
RefSeq:NP_001119895.1 UniGene:Dr.104653 SMR:B0S6P6
Ensembl:ENSDART00000006867 GeneID:566947 KEGG:dre:566947 CTD:566947
OMA:IIMGNIN NextBio:20888452 Uniprot:B0S6P6
Length = 709
Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
Identities = 159/402 (39%), Positives = 224/402 (55%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F + + E+++ + YT+PT VQ+ AIP + RDL+ +QTGSGKTAAF+LP L
Sbjct: 224 SFHDVDMGEIIMGNITLSRYTRPTPVQKYAIPIIKTKRDLMACAQTGSGKTAAFLLPVLS 283
Query: 62 KFASSK--NKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
+ S + K + Q N K K+ P LVL PTRELALQ+ +
Sbjct: 284 QIYSEGPGEALQATKASTQQENGKYVRRKQ-------YPISLVLAPTRELALQIYDEARK 336
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
+ Y +++ + GG +Q++ L R +L+ATPGRL+D M GKI + + LVLD
Sbjct: 337 FA-YRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCKYLVLD 395
Query: 180 EADRMLDMGFINDIEKIV--DATPV--TRQTMLFSATLDGIVGNMAENITKDPLILKVNS 235
EADRMLDMGF I +IV D P +RQTM+FSAT + +A + ++ + L V
Sbjct: 396 EADRMLDMGFEPQIRRIVEQDTMPPKGSRQTMMFSATFPKEIQILARDFLEEYIFLAVGR 455
Query: 236 IEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFL 295
+ +NITQ +++V++ ++ LLD L + +VF TK+ AD + D L G+
Sbjct: 456 VGSTSENITQKVVWVEENDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYREGYA 515
Query: 296 AAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVH 355
+HGD Q R L R GR I+VAT VAARG+D+ + HV N+DLP E+YVH
Sbjct: 516 CTSIHGDRSQRDREEALHQFRSGRCPIMVATAVAARGLDISNVKHVINFDLPSDIEEYVH 575
Query: 356 RIGRTGRAGRNGFAVSLVNHAERMNIKK----IERFTKQQIP 393
RIGRTGR G G A S N + NI K I KQ++P
Sbjct: 576 RIGRTGRVGNLGLATSFYND-KNSNITKDLLDILVEAKQEVP 616
>TIGR_CMR|VC_2564 [details] [associations]
symbol:VC_2564 "ATP-dependent RNA helicase DbpA"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
KO:K05591 ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
OMA:THEKSTI PIR:B82060 RefSeq:NP_232192.1 ProteinModelPortal:Q9KP15
DNASU:2615581 GeneID:2615581 KEGG:vch:VC2564 PATRIC:20084152
Uniprot:Q9KP15
Length = 460
Score = 576 (207.8 bits), Expect = 7.7e-66, Sum P(2) = 7.7e-66
Identities = 132/319 (41%), Positives = 183/319 (57%)
Query: 91 LRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPE 150
L K + + LVL PTRELA QV G + IK +++ GGMP Q+ L
Sbjct: 66 LNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAH 125
Query: 151 ILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFS 210
IL+ TPGR++DH++ +I+ S L LVLDEADRML+MGF +E I+ A P RQT+LFS
Sbjct: 126 ILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLFS 185
Query: 211 ATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVG 270
AT + +A+++T++ L++KV + +I Q V+ ++ L+ LL +
Sbjct: 186 ATYPASIEQIAQSVTRNALMIKVEATHDTS-SIRQYFYKVEGSAARDEALETLLLHHQPT 244
Query: 271 QAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAA 330
+VVF TKR+ +AD L+ SGF LHGD+ Q R++ L I ILVATDVAA
Sbjct: 245 SSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAA 304
Query: 331 RGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQ 390
RG+DV + VFNYDL + PE +VHRIGRTGRAG G A S + E + +I+ +
Sbjct: 305 RGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEY--M 362
Query: 391 QIPIEVINGFEPKKRIRTY 409
I IE +P R Y
Sbjct: 363 DIAIEPSTLPQPAAGARPY 381
Score = 112 (44.5 bits), Expect = 7.7e-66, Sum P(2) = 7.7e-66
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+F ++ L +L L +G+ T +Q Q++PA + G+D+I +TGSGKTAAF L L
Sbjct: 5 SFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVL 63
>POMBASE|SPBP8B7.16c [details] [associations]
symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
NextBio:20802492 Uniprot:P24782
Length = 550
Score = 545 (196.9 bits), Expect = 1.6e-65, Sum P(2) = 1.6e-65
Identities = 128/276 (46%), Positives = 169/276 (61%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P +LVL PTRELA+Q+ ++G +I+ + GG+P Q++ L R EI +ATPG
Sbjct: 196 PIVLVLAPTRELAVQIQQECTKFGK-SSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPG 254
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RL+D ++S K N + LVLDEADRMLDMGF I KIVD RQT++FSAT V
Sbjct: 255 RLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEV 314
Query: 218 GNMAENITKDPLILKVNSIE-KKQKNITQSILFVDDILHKNRL---LDYLLRDKRVGQAV 273
+A + D + + V S++ NI Q + VD+ + RL ++ +L+D R + +
Sbjct: 315 QRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKD-RDNKVL 373
Query: 274 VFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGI 333
+FT TKR AD I L G+ A +HGD Q+ R+ L R G+ I+VATDVA+RGI
Sbjct: 374 IFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGI 433
Query: 334 DVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFA 369
DV ITHVFNYD P EDYVHRIGRTGRAG G A
Sbjct: 434 DVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTA 469
Score = 140 (54.3 bits), Expect = 1.6e-65, Sum P(2) = 1.6e-65
Identities = 27/58 (46%), Positives = 40/58 (68%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
F+ G VLK + ++G+ PT +Q+QA P A+SGRD++ S TGSGKT ++ LPA+
Sbjct: 124 FEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAI 181
>ZFIN|ZDB-GENE-980526-150 [details] [associations]
symbol:pl10 "pl10" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-980526-150 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K11594 HOVERGEN:HBG015893
EMBL:BC059794 IPI:IPI00483337 RefSeq:NP_571016.2 UniGene:Dr.75779
ProteinModelPortal:Q6PBB2 SMR:Q6PBB2 GeneID:30116 KEGG:dre:30116
CTD:30116 InParanoid:Q6PBB2 NextBio:20806595 ArrayExpress:Q6PBB2
Uniprot:Q6PBB2
Length = 688
Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
Identities = 162/400 (40%), Positives = 220/400 (55%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F + + E+++ + YT+PT VQ+ AIP S RDL+ +QTGSGKTAAF+LP L +
Sbjct: 210 FHDLEMGEIIMGNINLSRYTRPTPVQKHAIPIIKSKRDLMACAQTGSGKTAAFLLPVLSQ 269
Query: 63 -FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ + KN Q N K K+ P LVL PTRELALQ+ ++
Sbjct: 270 IYTDGPGEALQAAKNSAQENGKYGRRKQ-------YPISLVLAPTRELALQIYDEARKFS 322
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
Y ++ + GG +Q++ L R +L+ATPGRL+D M GKI + LVLDEA
Sbjct: 323 -YRSHVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLLDMMERGKIGLDYCNYLVLDEA 381
Query: 182 DRMLDMGFINDIEKIV--DATPVT--RQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
DRMLDMGF I +IV D P RQTM+FSAT + +A + +D + L V +
Sbjct: 382 DRMLDMGFEPQIRRIVEQDTMPPKGLRQTMMFSATFPKEIQILARDFLEDYIFLAVGRVG 441
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+NITQ +++V++ ++ LLD L + +VF TK+ AD + D L G+
Sbjct: 442 STSENITQKVVWVEENDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYREGYACT 501
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
+HGD Q R L R GR ILVAT VAARG+D+ + HV N+DLP E+YVHRI
Sbjct: 502 SIHGDRSQRDREEALHQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI 561
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKK----IERFTKQQIP 393
GRTGR G G A S N + NI K I KQ++P
Sbjct: 562 GRTGRVGNLGLATSFFND-KNGNITKDLLDILVEAKQEVP 600
>UNIPROTKB|F1NIX2 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 EMBL:AADN02011031 IPI:IPI00579247
Ensembl:ENSGALT00000026171 ArrayExpress:F1NIX2 Uniprot:F1NIX2
Length = 636
Score = 643 (231.4 bits), Expect = 4.2e-65, Sum P(2) = 4.2e-65
Identities = 155/402 (38%), Positives = 223/402 (55%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F + + E+++ + YT+PT VQ+ AIP RDL+ +QTGSGKTAAF+LP L
Sbjct: 157 SFSDVDMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 216
Query: 62 K-FASSK-NKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
+ +A + + MK N Y +++ P LVL PTRELA+Q+ +
Sbjct: 217 QIYADGPGDALRAMKAT-----NGRYGRRKQY------PISLVLAPTRELAVQIYEEARK 265
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
+ Y +++ + GG +Q++ L R +L+ATPGRL+D M GKI + LVLD
Sbjct: 266 FA-YRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 324
Query: 180 EADRMLDMGFINDIEKIV--DATPV--TRQTMLFSATLDGIVGNMAENITKDPLILKVNS 235
EADRMLDMGF I +IV D P R TM+FSAT + +A + + + L V
Sbjct: 325 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 384
Query: 236 IEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFL 295
+ +NITQ +++V+++ ++ LLD L + +VF TK+ AD + D L G+
Sbjct: 385 VGSTSENITQKVVWVEELDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYA 444
Query: 296 AAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVH 355
+HGD Q R L R G+ ILVAT VAARG+D+ + HV N+DLP E+YVH
Sbjct: 445 CTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVH 504
Query: 356 RIGRTGRAGRNGFAVSLVNHAERMNIKK--IERFT--KQQIP 393
RIGRTGR G G A S N +NI K ++ KQ++P
Sbjct: 505 RIGRTGRVGNLGLATSFFNE-RNINITKDLLDLLVEAKQEVP 545
Score = 38 (18.4 bits), Expect = 4.2e-65, Sum P(2) = 4.2e-65
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 358 GRTGRAGRNGF 368
GRTG +G GF
Sbjct: 598 GRTGGSGSRGF 608
>TIGR_CMR|DET_0183 [details] [associations]
symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
OMA:NFAPAVM ProtClustDB:CLSK837629
BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
Length = 560
Score = 539 (194.8 bits), Expect = 4.2e-65, Sum P(2) = 4.2e-65
Identities = 117/303 (38%), Positives = 179/303 (59%)
Query: 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGR 158
R LVL PTRELA Q+ + G +I+ SI GG+ +Q++ L ++++A PGR
Sbjct: 72 RTLVLAPTRELACQIAESFRSLG-QRARIRECSIYGGVNMDQQIRRLRSGVDVVVACPGR 130
Query: 159 LIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVG 218
L+DH+ G I+ ++ L++DEADRM DMGF DI+ I+ QT+LFSAT+ V
Sbjct: 131 LLDHIWRGTIDICGVETLIIDEADRMFDMGFQPDIQSILKCLVQPHQTLLFSATMPPEVR 190
Query: 219 NMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTAT 278
+ +P+ +++ + + +++ S+ V + K LL +L+ ++F T
Sbjct: 191 KLTLETQTNPVTIQIGT-QAPASSVSHSVYPVKNH-QKTPLLIEILKTTETKSVLIFART 248
Query: 279 KRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAI 338
K A+ +AD ++ +GF A L G+L QN R+ +E RRG KILVATD+AARG+D+ I
Sbjct: 249 KYGAENLADEISRAGFTTASLQGNLSQNRRHAVMEGFRRGNFKILVATDIAARGLDIDHI 308
Query: 339 THVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVIN 398
+HV NYD+P PEDY HRIGRTGR R G A+SLV + ++ I++ I ++
Sbjct: 309 SHVINYDMPDTPEDYTHRIGRTGRFDRTGQALSLVTGRDGDMVRDIQKLINSPIQRLRVD 368
Query: 399 GFE 401
GF+
Sbjct: 369 GFD 371
Score = 142 (55.0 bits), Expect = 4.2e-65, Sum P(2) = 4.2e-65
Identities = 28/66 (42%), Positives = 41/66 (62%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+S V+ + GY +PT +Q QAIP + G D+I +QTG+GKTAA+ LP +
Sbjct: 1 MSFESFNFAPAVMAGVRACGYQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVI 60
Query: 61 HKFASS 66
K S+
Sbjct: 61 QKMLST 66
>ASPGD|ASPL0000013201 [details] [associations]
symbol:AN4233 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
Length = 465
Score = 524 (189.5 bits), Expect = 8.7e-65, Sum P(2) = 8.7e-65
Identities = 118/294 (40%), Positives = 172/294 (58%)
Query: 101 LVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160
LVL PTRELA Q++ A E G + ++ I+GGM + Q L + P I++ATPGRL+
Sbjct: 118 LVLAPTRELAYQISQAFETLGSTIG-VRCAVIVGGMDMVAQSIALGKKPHIIVATPGRLL 176
Query: 161 DHMNSGK-INFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGN 219
DH+ + K + +L+ L +DEADR+LDM F ++KI+ P TR T LFSAT+ V +
Sbjct: 177 DHLENTKGFSLRNLKYLAIDEADRLLDMDFGESLDKIIRILPRTRHTYLFSATMSTKVES 236
Query: 220 MAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATK 279
+ +P+ + V+S + + S + + HKN L YLL + A++FT T
Sbjct: 237 LQRASLSNPVRVSVSSKYQTVSTLQSSYICIPH-KHKNLYLVYLLNEFAGQSAIIFTTTV 295
Query: 280 RDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAIT 339
+ +A L GF A PLHG L Q+AR L R ILVATDVAARG+D+P++
Sbjct: 296 HETQRVAFMLRALGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVD 355
Query: 340 HVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIP 393
VFN+DLP + Y+HR+GRT RAG++G A+S V + +IE +++P
Sbjct: 356 VVFNFDLPMDSKTYIHRVGRTARAGKSGVAISFVTQYDVEVWLRIEHALSKKLP 409
Score = 154 (59.3 bits), Expect = 8.7e-65, Sum P(2) = 8.7e-65
Identities = 30/59 (50%), Positives = 42/59 (71%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+FK +G+ + + +A +GY PT +Q QAIP A+ GRD+I ++TGSGKTAAF LP L
Sbjct: 47 SFKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPML 105
>UNIPROTKB|B4DXX7 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893
UniGene:Hs.99120 HGNC:HGNC:2699 EMBL:AC004474 EMBL:AK302172
IPI:IPI00646152 SMR:B4DXX7 STRING:B4DXX7 Ensembl:ENST00000537441
UCSC:uc011nar.1 Uniprot:B4DXX7
Length = 657
Score = 655 (235.6 bits), Expect = 2.9e-64, P = 2.9e-64
Identities = 158/402 (39%), Positives = 220/402 (54%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
NF I + E+++ + YT+PT VQ+ AIP RDL+ +QTGSGKTAAF+LP L
Sbjct: 176 NFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILS 235
Query: 62 KFASSK--NKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
+ + + +K+N K Y P LVL PTRELA+Q+ +
Sbjct: 236 QIYTDGPGEALKAVKENGRYGRRKQY------------PISLVLAPTRELAVQIYEEARK 283
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
+ Y +++ + GG +Q++ L R +L+ATPGRL+D M GKI + LVLD
Sbjct: 284 FS-YRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 342
Query: 180 EADRMLDMGFINDIEKIV--DATPV--TRQTMLFSATLDGIVGNMAENITKDPLILKVNS 235
EADRMLDMGF I +IV D P R TM+FSAT + +A + + + L V
Sbjct: 343 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 402
Query: 236 IEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFL 295
+ +NITQ +++V+D+ ++ LLD L +VF TK+ AD + D L G+
Sbjct: 403 VGSTSENITQKVVWVEDLDKRSFLLDILGATGSDSLTLVFVETKKGADSLEDFLYHEGYA 462
Query: 296 AAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVH 355
+HGD Q R L R G+ ILVAT VAARG+D+ + HV N+DLP E+YVH
Sbjct: 463 CTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVH 522
Query: 356 RIGRTGRAGRNGFAVSLVNHAERMNIKK--IERFT--KQQIP 393
RIGRTGR G G A S N + MNI K ++ KQ++P
Sbjct: 523 RIGRTGRVGNLGLATSFFNE-KNMNITKDLLDLLVEAKQEVP 563
>UNIPROTKB|O15523 [details] [associations]
symbol:DDX3Y "ATP-dependent RNA helicase DDX3Y"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 Orphanet:1646
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 HPA:HPA001648
HPA:HPA005631 OrthoDB:EOG47D9FV EMBL:AF000985 EMBL:AF000984
EMBL:BC034942 IPI:IPI00293616 RefSeq:NP_001116137.1
RefSeq:NP_004651.2 UniGene:Hs.99120 ProteinModelPortal:O15523
SMR:O15523 IntAct:O15523 MINT:MINT-2999090 STRING:O15523
PhosphoSite:O15523 PaxDb:O15523 PRIDE:O15523
Ensembl:ENST00000336079 Ensembl:ENST00000360160 GeneID:8653
KEGG:hsa:8653 UCSC:uc004fsu.1 CTD:8653 GeneCards:GC0YP015016
HGNC:HGNC:2699 MIM:400010 neXtProt:NX_O15523 PharmGKB:PA27168
InParanoid:O15523 OMA:GNWANAN PhylomeDB:O15523 GenomeRNAi:8653
NextBio:32449 ArrayExpress:O15523 Bgee:O15523 CleanEx:HS_DDX3Y
Genevestigator:O15523 GermOnline:ENSG00000067048 Uniprot:O15523
Length = 660
Score = 655 (235.6 bits), Expect = 2.9e-64, P = 2.9e-64
Identities = 158/402 (39%), Positives = 220/402 (54%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
NF I + E+++ + YT+PT VQ+ AIP RDL+ +QTGSGKTAAF+LP L
Sbjct: 179 NFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILS 238
Query: 62 KFASSK--NKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
+ + + +K+N K Y P LVL PTRELA+Q+ +
Sbjct: 239 QIYTDGPGEALKAVKENGRYGRRKQY------------PISLVLAPTRELAVQIYEEARK 286
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
+ Y +++ + GG +Q++ L R +L+ATPGRL+D M GKI + LVLD
Sbjct: 287 FS-YRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 345
Query: 180 EADRMLDMGFINDIEKIV--DATPV--TRQTMLFSATLDGIVGNMAENITKDPLILKVNS 235
EADRMLDMGF I +IV D P R TM+FSAT + +A + + + L V
Sbjct: 346 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 405
Query: 236 IEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFL 295
+ +NITQ +++V+D+ ++ LLD L +VF TK+ AD + D L G+
Sbjct: 406 VGSTSENITQKVVWVEDLDKRSFLLDILGATGSDSLTLVFVETKKGADSLEDFLYHEGYA 465
Query: 296 AAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVH 355
+HGD Q R L R G+ ILVAT VAARG+D+ + HV N+DLP E+YVH
Sbjct: 466 CTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVH 525
Query: 356 RIGRTGRAGRNGFAVSLVNHAERMNIKK--IERFT--KQQIP 393
RIGRTGR G G A S N + MNI K ++ KQ++P
Sbjct: 526 RIGRTGRVGNLGLATSFFNE-KNMNITKDLLDLLVEAKQEVP 566
>ASPGD|ASPL0000006660 [details] [associations]
symbol:AN5931 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
Length = 563
Score = 541 (195.5 bits), Expect = 2.9e-64, Sum P(2) = 2.9e-64
Identities = 124/301 (41%), Positives = 178/301 (59%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P +L+L PTRELA+Q+ A ++G +I+ + GG+P Q++ LSR E+ +ATPG
Sbjct: 214 PIVLILAPTRELAVQIQAEISKFGK-SSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPG 272
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLID + +G+ N + LVLDEADRMLDMGF I KI+ RQT ++SAT V
Sbjct: 273 RLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMWSATWPKEV 332
Query: 218 GNMAENITKDPLILKVNSIEKKQKN-ITQSILFVDDILHKNRLLDYL--LRDKRVGQAVV 274
+A + + + + + S++ + ITQ + + + ++R++ +L + + R + +V
Sbjct: 333 RQLASDFLNNYIQVNIGSMDLSANHRITQIVEVISEFEKRDRMIKHLEKIMENRGNKCLV 392
Query: 275 FTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGID 334
FT TKR AD I L G+ A +HGD Q R+ L + G+ I+VATDVA+RGID
Sbjct: 393 FTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGID 452
Query: 335 VPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLV---NHAERMNIKKIERFTKQQ 391
V ITHV NYD P EDYVHRIGRTGRAG G A++ N + ++ I KQQ
Sbjct: 453 VRDITHVINYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNAKQARDLVTILSEAKQQ 512
Query: 392 I 392
I
Sbjct: 513 I 513
Score = 132 (51.5 bits), Expect = 2.9e-64, Sum P(2) = 2.9e-64
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
F G + VL + G+ KPT +Q Q P A+SGRD++ ++TGSGKT ++ LPA+
Sbjct: 142 FDEAGFPQYVLSEVKAQGFEKPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAI 199
>UNIPROTKB|Q81JK1 [details] [associations]
symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 529 (191.3 bits), Expect = 2.9e-64, Sum P(2) = 2.9e-64
Identities = 115/305 (37%), Positives = 176/305 (57%)
Query: 89 ERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRN 148
E + ++ +P+ LVLTPTRELA+QV G + K+IKA +I G P+ RQ L +
Sbjct: 64 EMVEWEENKPQALVLTPTRELAVQVKEDITNIGRF-KRIKAAAIYGKSPFARQKLELKQK 122
Query: 149 PEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTML 208
I++ TPGR++DH+ G ++ L+ LV+DEAD ML+MGFI+ +E I+D P R TML
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182
Query: 209 FSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKR 268
FSATL V ++ P +++ + I ++ V + K LL + +
Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREE-EKLSLLKDVTTIEN 241
Query: 269 VGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDV 328
++F T+ + D + +L+ + +HG + Q R +++ R+G+ + LVATDV
Sbjct: 242 PDSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVATDV 301
Query: 329 AARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFT 388
AARGID+ ITHV NYD+P E YVHR GRTGRAG +G A++ + E +++IE +
Sbjct: 302 AARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEAYI 361
Query: 389 KQQIP 393
IP
Sbjct: 362 GFAIP 366
Score = 144 (55.7 bits), Expect = 2.9e-64, Sum P(2) = 2.9e-64
Identities = 30/68 (44%), Positives = 42/68 (61%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F + L + V +AL +GY PT VQ + IP A+ +DL+V SQTGSGKTA+F +P
Sbjct: 5 SFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE 64
Query: 62 KFASSKNK 69
+NK
Sbjct: 65 MVEWEENK 72
>TIGR_CMR|BA_5703 [details] [associations]
symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 529 (191.3 bits), Expect = 2.9e-64, Sum P(2) = 2.9e-64
Identities = 115/305 (37%), Positives = 176/305 (57%)
Query: 89 ERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRN 148
E + ++ +P+ LVLTPTRELA+QV G + K+IKA +I G P+ RQ L +
Sbjct: 64 EMVEWEENKPQALVLTPTRELAVQVKEDITNIGRF-KRIKAAAIYGKSPFARQKLELKQK 122
Query: 149 PEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTML 208
I++ TPGR++DH+ G ++ L+ LV+DEAD ML+MGFI+ +E I+D P R TML
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182
Query: 209 FSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKR 268
FSATL V ++ P +++ + I ++ V + K LL + +
Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREE-EKLSLLKDVTTIEN 241
Query: 269 VGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDV 328
++F T+ + D + +L+ + +HG + Q R +++ R+G+ + LVATDV
Sbjct: 242 PDSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVATDV 301
Query: 329 AARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFT 388
AARGID+ ITHV NYD+P E YVHR GRTGRAG +G A++ + E +++IE +
Sbjct: 302 AARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEAYI 361
Query: 389 KQQIP 393
IP
Sbjct: 362 GFAIP 366
Score = 144 (55.7 bits), Expect = 2.9e-64, Sum P(2) = 2.9e-64
Identities = 30/68 (44%), Positives = 42/68 (61%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F + L + V +AL +GY PT VQ + IP A+ +DL+V SQTGSGKTA+F +P
Sbjct: 5 SFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE 64
Query: 62 KFASSKNK 69
+NK
Sbjct: 65 MVEWEENK 72
>MGI|MGI:103064 [details] [associations]
symbol:Ddx3x "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3,
X-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=ISO] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0006200 "ATP
catabolic process" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=ISO]
[GO:0007243 "intracellular protein kinase cascade" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0008143 "poly(A) RNA binding" evidence=ISO] [GO:0008152
"metabolic process" evidence=IEA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=ISO] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=ISO] [GO:0009615 "response to virus" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010501
"RNA secondary structure unwinding" evidence=ISO] [GO:0016020
"membrane" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0031333 "negative regulation of protein complex assembly"
evidence=ISO] [GO:0031369 "translation initiation factor binding"
evidence=ISO] [GO:0034063 "stress granule assembly" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0042256 "mature ribosome
assembly" evidence=ISO] [GO:0043024 "ribosomal small subunit
binding" evidence=ISO] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISO] [GO:0043066 "negative regulation
of apoptotic process" evidence=ISO] [GO:0043154 "negative
regulation of cysteine-type endopeptidase activity involved in
apoptotic process" evidence=ISO] [GO:0043280 "positive regulation
of cysteine-type endopeptidase activity involved in apoptotic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=ISO] [GO:0045727 "positive regulation of translation"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0045948
"positive regulation of translational initiation" evidence=ISO]
[GO:0048027 "mRNA 5'-UTR binding" evidence=ISO] [GO:0071243
"cellular response to arsenic-containing substance" evidence=ISO]
[GO:0071470 "cellular response to osmotic stress" evidence=ISO]
[GO:0097193 "intrinsic apoptotic signaling pathway" evidence=ISO]
[GO:1900087 "positive regulation of G1/S transition of mitotic cell
cycle" evidence=ISO] [GO:2001243 "negative regulation of intrinsic
apoptotic signaling pathway" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:103064
GO:GO:0005524 GO:GO:0005634 GO:GO:0043066 GO:GO:0043154
GO:GO:0030307 GO:GO:0007059 GO:GO:0005741 GO:GO:0017148
GO:GO:0003677 GO:GO:0031333 GO:GO:0016607 GO:GO:0045944
GO:GO:0045087 GO:GO:0007243 GO:GO:0006351 GO:GO:0009615
GO:GO:0043065 GO:GO:0048027 GO:GO:0043280 GO:GO:0071470
GO:GO:0004003 GO:GO:0097193 GO:GO:1900087 GO:GO:0008134
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 KO:K11594
HOVERGEN:HBG015893 CTD:1654 OrthoDB:EOG47D9FV ChiTaRS:DDX3X
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 EMBL:Z38117 EMBL:L25126
IPI:IPI00230035 PIR:I84741 RefSeq:NP_034158.1 UniGene:Mm.289662
ProteinModelPortal:Q62167 SMR:Q62167 IntAct:Q62167
MINT:MINT-1870173 STRING:Q62167 PhosphoSite:Q62167
REPRODUCTION-2DPAGE:Q62167 PaxDb:Q62167 PRIDE:Q62167
Ensembl:ENSMUST00000000804 GeneID:13205 KEGG:mmu:13205
InParanoid:Q62167 NextBio:283364 Bgee:Q62167 CleanEx:MM_ERH
Genevestigator:Q62167 GermOnline:ENSMUSG00000000787 Uniprot:Q62167
Length = 662
Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
Identities = 160/411 (38%), Positives = 226/411 (54%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F + + E+++ + YT+PT VQ+ AIP RDL+ +QTGSGKTAAF+LP L
Sbjct: 181 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240
Query: 62 K-FASSKNK-IPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
+ +A + + MK+N K Y P LVL PTRELA+Q+ +
Sbjct: 241 QIYADGPGEALRAMKENGRYGRRKQY------------PISLVLAPTRELAVQIYEEARK 288
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
+ Y +++ + GG +Q++ L R +L+ATPGRL+D M GKI + LVLD
Sbjct: 289 FS-YRSRVRPCVVYGGAEIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 347
Query: 180 EADRMLDMGFINDIEKIV--DATPV--TRQTMLFSATLDGIVGNMAENITKDPLILKVNS 235
EADRMLDMGF I +IV D P R TM+FSAT + +A + + + L V
Sbjct: 348 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 407
Query: 236 IEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFL 295
+ +NITQ +++V++I ++ LLD L + +VF TK+ AD + D L G+
Sbjct: 408 VGSTSENITQKVVWVEEIDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYA 467
Query: 296 AAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVH 355
+HGD Q R L R G+ ILVAT VAARG+D+ + HV N+DLP E+YVH
Sbjct: 468 CTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVH 527
Query: 356 RIGRTGRAGRNGFAVSLVNHAERMNIKK--IERFT--KQQIPIEVIN-GFE 401
RIGRTGR G G A S N +NI K ++ KQ++P + N FE
Sbjct: 528 RIGRTGRVGNLGLATSFFNE-RNINITKDLLDLLVEAKQEVPSWLENMAFE 577
>RGD|1564771 [details] [associations]
symbol:Ddx3x "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
X-linked" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1564771 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:KYERGGN OrthoDB:EOG47D9FV IPI:IPI00362534 PhosphoSite:D4ADE8
PRIDE:D4ADE8 Ensembl:ENSRNOT00000039551 UCSC:RGD:1564771
Uniprot:D4ADE8
Length = 662
Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
Identities = 160/411 (38%), Positives = 226/411 (54%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F + + E+++ + YT+PT VQ+ AIP RDL+ +QTGSGKTAAF+LP L
Sbjct: 181 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240
Query: 62 K-FASSKNK-IPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
+ +A + + MK+N K Y P LVL PTRELA+Q+ +
Sbjct: 241 QIYADGPGEALRAMKENGRYGRRKQY------------PISLVLAPTRELAVQIYEEARK 288
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
+ Y +++ + GG +Q++ L R +L+ATPGRL+D M GKI + LVLD
Sbjct: 289 FS-YRSRVRPCVVYGGAEIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 347
Query: 180 EADRMLDMGFINDIEKIV--DATPV--TRQTMLFSATLDGIVGNMAENITKDPLILKVNS 235
EADRMLDMGF I +IV D P R TM+FSAT + +A + + + L V
Sbjct: 348 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 407
Query: 236 IEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFL 295
+ +NITQ +++V++I ++ LLD L + +VF TK+ AD + D L G+
Sbjct: 408 VGSTSENITQKVVWVEEIDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYA 467
Query: 296 AAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVH 355
+HGD Q R L R G+ ILVAT VAARG+D+ + HV N+DLP E+YVH
Sbjct: 468 CTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVH 527
Query: 356 RIGRTGRAGRNGFAVSLVNHAERMNIKK--IERFT--KQQIPIEVIN-GFE 401
RIGRTGR G G A S N +NI K ++ KQ++P + N FE
Sbjct: 528 RIGRTGRVGNLGLATSFFNE-RNINITKDLLDLLVEAKQEVPSWLENMAFE 577
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 521 (188.5 bits), Expect = 4.8e-64, Sum P(2) = 4.8e-64
Identities = 122/280 (43%), Positives = 161/280 (57%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P +L+L PTRELA+Q+ + ++GL +++ I GG P Q++ L R EI++ATPG
Sbjct: 239 PIVLILAPTRELAVQIQEESRKFGL-RSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPG 297
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLID + N + LVLDEADRMLDMGF I KIV RQT+L+SAT V
Sbjct: 298 RLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREV 357
Query: 218 GNMAENITKDPLILKVNSIE-KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAV-VF 275
+A +DP + S + K ++I Q I V NRLL LL+ G + +F
Sbjct: 358 ETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLT-LLKQLMDGSKILIF 416
Query: 276 TATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDV 335
TKR D + +L + G+ A +HGD Q+ R+R L + GR I+ ATDVAARG+DV
Sbjct: 417 VETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDV 476
Query: 336 PAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNH 375
I V NYD P EDY+HRIGRTGRAG G A + H
Sbjct: 477 KDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTH 516
Score = 150 (57.9 bits), Expect = 4.8e-64, Sum P(2) = 4.8e-64
Identities = 28/58 (48%), Positives = 42/58 (72%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
F+ + +L+A+ K+G+T+PT +Q Q P A+ GRDLI ++TGSGKT A++LPAL
Sbjct: 167 FQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAL 224
>UNIPROTKB|A4QSS5 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase DBP2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
KEGG:mgr:MGG_16901 Uniprot:A4QSS5
Length = 548
Score = 545 (196.9 bits), Expect = 2.0e-63, Sum P(2) = 2.0e-63
Identities = 125/303 (41%), Positives = 183/303 (60%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P +L+L PTRELA+Q+ A ++G +I+ + GG+P Q++ LSR E+ +ATPG
Sbjct: 199 PIVLILAPTRELAVQIQAEISKFGK-SSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPG 257
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLID + SGK N + LVLDEADRMLDMGF I KI+ RQT+++SAT V
Sbjct: 258 RLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLMWSATWPKEV 317
Query: 218 GNMAENITKDPLILKVNSIEKKQKN-ITQSILFVDDILHKNRLLDYL--LRDKR--VGQA 272
NMA + +D + + + S++ + ITQ + V + ++R++ ++ + D + +
Sbjct: 318 RNMAADFLQDFIQVNIGSLDLSANHRITQIVEVVSESEKRDRMIRHMEKVMDGKDSKNKI 377
Query: 273 VVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARG 332
++F TKR AD I L G+ A +HGD QN R+ L+ + G+ I+VATDVA+RG
Sbjct: 378 LIFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVASRG 437
Query: 333 IDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLV---NHAERMNIKKIERFTK 389
IDV ITHV NYD P EDY+HRIGRTGRAG G A++ N + ++ + + K
Sbjct: 438 IDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTENSKQARDLLGVLQEAK 497
Query: 390 QQI 392
Q+I
Sbjct: 498 QEI 500
Score = 120 (47.3 bits), Expect = 2.0e-63, Sum P(2) = 2.0e-63
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
F G V+ + G+ PT +Q Q P A+SGRD++ ++TGSGKT + LPA+
Sbjct: 127 FDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAI 184
>UNIPROTKB|Q485I3 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 534 (193.0 bits), Expect = 2.0e-63, Sum P(2) = 2.0e-63
Identities = 125/328 (38%), Positives = 187/328 (57%)
Query: 90 RLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNP 149
+L K + + +V+ PTRELA QV + + IK +++ GG P+ Q+ L
Sbjct: 71 KLEVKKFRIQSMVICPTRELADQVAKELRKLARGIHNIKILTLCGGTPFGPQIGSLEHGA 130
Query: 150 EILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLF 209
+++ TPGRL +H+ G + +L +LVLDEADRML+MGF ++ IV TP+ RQT+LF
Sbjct: 131 HVIVGTPGRLEEHVIKGTLQLDNLNLLVLDEADRMLEMGFQAALDNIVGRTPLDRQTLLF 190
Query: 210 SATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFV---DDILHKNRLLDYLLRD 266
SAT + +++E+I DP+++K+ S E Q I+Q V DD L RLL L
Sbjct: 191 SATFPDQIKSISESIMTDPVMVKIASSED-QSTISQKFFKVGNDDDRLDALRLL---LLG 246
Query: 267 KRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVAT 326
+V +F TK++ +AD L+ GF LHGDL Q R++TL ILVAT
Sbjct: 247 NQVESTAIFCNTKKETQQVADALHFDGFSVLALHGDLEQRDRDQTLLRFANKSASILVAT 306
Query: 327 DVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIER 386
DVAARG+D+ ++ V NY + + E +VHRIGRTGRAG G A SL + E + +E
Sbjct: 307 DVAARGLDIDSLDLVINYHIARDSEVHVHRIGRTGRAGSTGIAYSLFSDKESYKVGLLED 366
Query: 387 F-----TKQQIP-IEVINGFEPKKRIRT 408
+ T + +P + V++ P+ ++ T
Sbjct: 367 YLEAVITPEPLPSLAVLSNERPQAKMAT 394
Score = 131 (51.2 bits), Expect = 2.0e-63, Sum P(2) = 2.0e-63
Identities = 28/71 (39%), Positives = 44/71 (61%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F S+ L + ++K L +GY + T +Q + +P + G+D+I ++TGSGKTAAF L L+K
Sbjct: 12 FSSLSLKQDLVKNLSSLGYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAAFGLALLNK 71
Query: 63 FASSKNKIPVM 73
K +I M
Sbjct: 72 LEVKKFRIQSM 82
>TIGR_CMR|CPS_1540 [details] [associations]
symbol:CPS_1540 "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 534 (193.0 bits), Expect = 2.0e-63, Sum P(2) = 2.0e-63
Identities = 125/328 (38%), Positives = 187/328 (57%)
Query: 90 RLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNP 149
+L K + + +V+ PTRELA QV + + IK +++ GG P+ Q+ L
Sbjct: 71 KLEVKKFRIQSMVICPTRELADQVAKELRKLARGIHNIKILTLCGGTPFGPQIGSLEHGA 130
Query: 150 EILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLF 209
+++ TPGRL +H+ G + +L +LVLDEADRML+MGF ++ IV TP+ RQT+LF
Sbjct: 131 HVIVGTPGRLEEHVIKGTLQLDNLNLLVLDEADRMLEMGFQAALDNIVGRTPLDRQTLLF 190
Query: 210 SATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFV---DDILHKNRLLDYLLRD 266
SAT + +++E+I DP+++K+ S E Q I+Q V DD L RLL L
Sbjct: 191 SATFPDQIKSISESIMTDPVMVKIASSED-QSTISQKFFKVGNDDDRLDALRLL---LLG 246
Query: 267 KRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVAT 326
+V +F TK++ +AD L+ GF LHGDL Q R++TL ILVAT
Sbjct: 247 NQVESTAIFCNTKKETQQVADALHFDGFSVLALHGDLEQRDRDQTLLRFANKSASILVAT 306
Query: 327 DVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIER 386
DVAARG+D+ ++ V NY + + E +VHRIGRTGRAG G A SL + E + +E
Sbjct: 307 DVAARGLDIDSLDLVINYHIARDSEVHVHRIGRTGRAGSTGIAYSLFSDKESYKVGLLED 366
Query: 387 F-----TKQQIP-IEVINGFEPKKRIRT 408
+ T + +P + V++ P+ ++ T
Sbjct: 367 YLEAVITPEPLPSLAVLSNERPQAKMAT 394
Score = 131 (51.2 bits), Expect = 2.0e-63, Sum P(2) = 2.0e-63
Identities = 28/71 (39%), Positives = 44/71 (61%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F S+ L + ++K L +GY + T +Q + +P + G+D+I ++TGSGKTAAF L L+K
Sbjct: 12 FSSLSLKQDLVKNLSSLGYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAAFGLALLNK 71
Query: 63 FASSKNKIPVM 73
K +I M
Sbjct: 72 LEVKKFRIQSM 82
>MGI|MGI:1349406 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
Y-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1349406 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 OrthoDB:EOG47D9FV
CTD:8653 EMBL:AJ007376 EMBL:BC021453 EMBL:L25337 IPI:IPI00134371
RefSeq:NP_036138.1 UniGene:Mm.486436 ProteinModelPortal:Q62095
SMR:Q62095 STRING:Q62095 PhosphoSite:Q62095 PaxDb:Q62095
PRIDE:Q62095 Ensembl:ENSMUST00000091190 GeneID:26900 KEGG:mmu:26900
InParanoid:Q62095 NextBio:304749 Bgee:Q62095 Genevestigator:Q62095
GermOnline:ENSMUSG00000069045 Uniprot:Q62095
Length = 658
Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
Identities = 156/402 (38%), Positives = 220/402 (54%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
NF I + E+++ + YT+PT VQ+ AIP RDL+ +QTGSGKTAAF+LP L
Sbjct: 180 NFSDIEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 239
Query: 62 KFASSK--NKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
+ + + MK+N K Y P LVL PTRELA+Q+ +
Sbjct: 240 QIYTDGPGEALKAMKENGRYGRRKQY------------PISLVLAPTRELAVQIYEEARK 287
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
+ Y +++ + GG ++Q++ L R +L+ATPGRL+D M GKI + LVLD
Sbjct: 288 FS-YRSRVRPCVVYGGADTVQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 346
Query: 180 EADRMLDMGFINDIEKIV--DATPV--TRQTMLFSATLDGIVGNMAENITKDPLILKVNS 235
EADRMLDMGF I +IV D P R TM+FSAT + +A + + + L V
Sbjct: 347 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 406
Query: 236 IEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFL 295
+ +NITQ +++V+++ ++ LLD L + +VF TK+ AD + + L +
Sbjct: 407 VGSTSENITQKVVWVEELDKRSFLLDLLNATGKDSLTLVFVETKKGADSLENFLFQERYA 466
Query: 296 AAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVH 355
+HGD Q R L R GR ILVAT VAARG+D+ + HV N+DLP E+YVH
Sbjct: 467 CTSIHGDRSQKDREEALHQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEYVH 526
Query: 356 RIGRTGRAGRNGFAVSLVNHAERMNIKK--IERFT--KQQIP 393
RIGRTGR G G A S N +NI K ++ KQ++P
Sbjct: 527 RIGRTGRVGNLGLATSFFNE-RNLNITKDLLDLLVEAKQEVP 567
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 520 (188.1 bits), Expect = 2.6e-63, Sum P(2) = 2.6e-63
Identities = 117/301 (38%), Positives = 178/301 (59%)
Query: 97 QPRM-LVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLAT 155
QP LVL PTREL Q+ + G M +++ I+GGM + Q + L R P +++AT
Sbjct: 190 QPYFALVLAPTRELTFQIKDTFDALGSSMG-LRSSCIVGGMDMMDQARDLMRKPHVIVAT 248
Query: 156 PGRLIDHMNSGK-INFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLD 214
PGR++DH+ K + +L+ LV+DEADR+LDM F ++KI+ P+ R T LFSAT+
Sbjct: 249 PGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRTTYLFSATMT 308
Query: 215 GIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVV 274
+ + +P+ + V+S + N+ QS++ V+D +KN +L +LL + +V
Sbjct: 309 NKIEKLQRASLHNPVRVAVSSKYQTADNLVQSMMLVNDG-YKNTILIHLLNEFMGKSIIV 367
Query: 275 FTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGID 334
FT T A A I GF A PLHG L Q+ R +L + + ILVATDVAARG+D
Sbjct: 368 FTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILVATDVAARGLD 427
Query: 335 VPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
+P++ V NYD+P + Y+HR+GRT RAGR+G ++SL+ + +IE +++P
Sbjct: 428 IPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRIESVLGKKLPK 487
Query: 395 E 395
E
Sbjct: 488 E 488
Score = 144 (55.7 bits), Expect = 2.6e-63, Sum P(2) = 2.6e-63
Identities = 28/58 (48%), Positives = 42/58 (72%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
FK + L +L+++ + +TKPT +Q +AIP A+ G+D+I +QTGSGKTAAF +P L
Sbjct: 125 FKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPIL 182
>UNIPROTKB|G5E631 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654
OMA:KYERGGN EMBL:DAAA02073612 RefSeq:NP_001179891.1 UniGene:Bt.9783
PRIDE:G5E631 Ensembl:ENSBTAT00000050399 GeneID:510093
KEGG:bta:510093 NextBio:20869274 Uniprot:G5E631
Length = 661
Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
Identities = 156/402 (38%), Positives = 219/402 (54%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F + + E+++ + YT+PT VQ+ AIP RDL+ +QTGSGKTAAF+LP L
Sbjct: 180 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 239
Query: 62 KFASSK--NKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
+ S + MK+N K Y P LVL PTRELA+Q+ +
Sbjct: 240 QIYSDGPGEALRAMKENGRYGRRKQY------------PISLVLAPTRELAVQIYEEARK 287
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
+ Y +++ + GG +Q++ L R +L+ATPGRL+D M GKI + LVLD
Sbjct: 288 FS-YRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 346
Query: 180 EADRMLDMGFINDIEKIV--DATPV--TRQTMLFSATLDGIVGNMAENITKDPLILKVNS 235
EADRMLDMGF I +IV D P R TM+FSAT + +A + + + L V
Sbjct: 347 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 406
Query: 236 IEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFL 295
+ +NITQ +++V++ ++ LLD L + +VF TK+ AD + D L G+
Sbjct: 407 VGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYA 466
Query: 296 AAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVH 355
+HGD Q R L R G+ ILVAT VAARG+D+ + HV N+DLP E+YVH
Sbjct: 467 CTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVH 526
Query: 356 RIGRTGRAGRNGFAVSLVNHAERMNIKK--IERFT--KQQIP 393
RIGRTGR G G A S N +NI K ++ KQ++P
Sbjct: 527 RIGRTGRVGNLGLATSFFNE-RNINITKDLLDLLVEAKQEVP 567
>UNIPROTKB|J9P0V9 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654 EMBL:AAEX03026295
RefSeq:XP_861268.1 Ensembl:ENSCAFT00000045177 GeneID:480886
KEGG:cfa:480886 Uniprot:J9P0V9
Length = 662
Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
Identities = 156/402 (38%), Positives = 219/402 (54%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F + + E+++ + YT+PT VQ+ AIP RDL+ +QTGSGKTAAF+LP L
Sbjct: 181 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240
Query: 62 KFASSK--NKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
+ S + MK+N K Y P LVL PTRELA+Q+ +
Sbjct: 241 QIYSDGPGEALRAMKENGRYGRRKQY------------PISLVLAPTRELAVQIYEEARK 288
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
+ Y +++ + GG +Q++ L R +L+ATPGRL+D M GKI + LVLD
Sbjct: 289 FS-YRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 347
Query: 180 EADRMLDMGFINDIEKIV--DATPV--TRQTMLFSATLDGIVGNMAENITKDPLILKVNS 235
EADRMLDMGF I +IV D P R TM+FSAT + +A + + + L V
Sbjct: 348 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 407
Query: 236 IEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFL 295
+ +NITQ +++V++ ++ LLD L + +VF TK+ AD + D L G+
Sbjct: 408 VGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYA 467
Query: 296 AAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVH 355
+HGD Q R L R G+ ILVAT VAARG+D+ + HV N+DLP E+YVH
Sbjct: 468 CTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVH 527
Query: 356 RIGRTGRAGRNGFAVSLVNHAERMNIKK--IERFT--KQQIP 393
RIGRTGR G G A S N +NI K ++ KQ++P
Sbjct: 528 RIGRTGRVGNLGLATSFFNE-RNINITKDLLDLLVEAKQEVP 568
>UNIPROTKB|O00571 [details] [associations]
symbol:DDX3X "ATP-dependent RNA helicase DDX3X"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0030307 "positive
regulation of cell growth" evidence=IMP] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IDA] [GO:1900087
"positive regulation of G1/S transition of mitotic cell cycle"
evidence=IMP] [GO:0045948 "positive regulation of translational
initiation" evidence=IMP] [GO:0031333 "negative regulation of
protein complex assembly" evidence=IDA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IMP] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0071470 "cellular response to osmotic
stress" evidence=IDA] [GO:0071243 "cellular response to
arsenic-containing substance" evidence=IDA] [GO:2001243 "negative
regulation of intrinsic apoptotic signaling pathway" evidence=IMP]
[GO:0007059 "chromosome segregation" evidence=IMP] [GO:0022627
"cytosolic small ribosomal subunit" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031369 "translation
initiation factor binding" evidence=IDA] [GO:0042256 "mature
ribosome assembly" evidence=IMP] [GO:0043024 "ribosomal small
subunit binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0009615 "response to virus" evidence=IDA] [GO:0007243
"intracellular protein kinase cascade" evidence=IDA] [GO:0032728
"positive regulation of interferon-beta production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=IMP] [GO:0071651
"positive regulation of chemokine (C-C motif) ligand 5 production"
evidence=TAS] [GO:0035613 "RNA stem-loop binding" evidence=IDA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IDA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IDA] [GO:0030308 "negative
regulation of cell growth" evidence=IDA] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043154 "negative regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IMP] [GO:0097193 "intrinsic apoptotic signaling pathway"
evidence=IMP] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IMP]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006200 "ATP catabolic process" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0019048
GO:GO:0043066 GO:GO:0043154 GO:GO:0030307 GO:GO:0007059
GO:GO:0030308 GO:GO:0005741 GO:GO:0017148 GO:GO:0003677
GO:GO:0031333 GO:GO:0016607 GO:GO:0045944 GO:GO:0045087
GO:GO:0007243 GO:GO:0006351 GO:GO:0009615 GO:GO:0043065
GO:GO:0048027 GO:GO:0043280 GO:GO:0071470 GO:GO:0004003
GO:GO:0097193 GO:GO:1900087 GO:GO:0008134 EMBL:CH471141
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
KO:K11594 HOVERGEN:HBG015893 EMBL:U50553 EMBL:AF061337
EMBL:AF000983 EMBL:AF000982 EMBL:AK291153 EMBL:AK304689
EMBL:AL391647 EMBL:Z93015 EMBL:BC011819 IPI:IPI00215637
IPI:IPI00985384 RefSeq:NP_001180346.1 RefSeq:NP_001347.3
UniGene:Hs.380774 PDB:2I4I PDB:2JGN PDB:3JRV PDBsum:2I4I
PDBsum:2JGN PDBsum:3JRV ProteinModelPortal:O00571 SMR:O00571
DIP:DIP-27551N IntAct:O00571 MINT:MINT-93217 STRING:O00571
PhosphoSite:O00571 REPRODUCTION-2DPAGE:IPI00215637
SWISS-2DPAGE:O00571 PaxDb:O00571 PeptideAtlas:O00571 PRIDE:O00571
Ensembl:ENST00000399959 Ensembl:ENST00000457138 GeneID:1654
KEGG:hsa:1654 UCSC:uc004dfe.3 CTD:1654 GeneCards:GC0XP041192
HGNC:HGNC:2745 HPA:HPA001648 HPA:HPA005631 MIM:300160
neXtProt:NX_O00571 PharmGKB:PA27216 InParanoid:O00571 OMA:KYERGGN
OrthoDB:EOG47D9FV PhylomeDB:O00571 BindingDB:O00571
ChEMBL:CHEMBL5553 ChiTaRS:DDX3X EvolutionaryTrace:O00571
GenomeRNAi:1654 NextBio:6810 ArrayExpress:O00571 Bgee:O00571
CleanEx:HS_DDX3X Genevestigator:O00571 GermOnline:ENSG00000124487
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 GO:GO:0071651
GO:GO:0032728 Uniprot:O00571
Length = 662
Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
Identities = 156/402 (38%), Positives = 219/402 (54%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F + + E+++ + YT+PT VQ+ AIP RDL+ +QTGSGKTAAF+LP L
Sbjct: 181 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240
Query: 62 KFASSK--NKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
+ S + MK+N K Y P LVL PTRELA+Q+ +
Sbjct: 241 QIYSDGPGEALRAMKENGRYGRRKQY------------PISLVLAPTRELAVQIYEEARK 288
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
+ Y +++ + GG +Q++ L R +L+ATPGRL+D M GKI + LVLD
Sbjct: 289 FS-YRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 347
Query: 180 EADRMLDMGFINDIEKIV--DATPV--TRQTMLFSATLDGIVGNMAENITKDPLILKVNS 235
EADRMLDMGF I +IV D P R TM+FSAT + +A + + + L V
Sbjct: 348 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 407
Query: 236 IEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFL 295
+ +NITQ +++V++ ++ LLD L + +VF TK+ AD + D L G+
Sbjct: 408 VGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYA 467
Query: 296 AAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVH 355
+HGD Q R L R G+ ILVAT VAARG+D+ + HV N+DLP E+YVH
Sbjct: 468 CTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVH 527
Query: 356 RIGRTGRAGRNGFAVSLVNHAERMNIKK--IERFT--KQQIP 393
RIGRTGR G G A S N +NI K ++ KQ++P
Sbjct: 528 RIGRTGRVGNLGLATSFFNE-RNINITKDLLDLLVEAKQEVP 568
>UNIPROTKB|F1RX16 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 OMA:KYERGGN
EMBL:CU861899 Ensembl:ENSSSCT00000013398 Uniprot:F1RX16
Length = 661
Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
Identities = 156/402 (38%), Positives = 218/402 (54%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F + + E+++ + YT+PT VQ+ AIP RDL+ +QTGSGKTAAF+LP L
Sbjct: 181 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240
Query: 62 KFASSK--NKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
+ S + MK+N K Y P LVL PTRELA+Q+ +
Sbjct: 241 QIYSDGPGEALRAMKENGRYGRRKQY------------PISLVLAPTRELAVQIYEEARK 288
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
+ Y +++ + GG +Q++ L R +L+ATPGRL+D M GKI + LVLD
Sbjct: 289 FS-YRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 347
Query: 180 EADRMLDMGFINDIEKIV--DATPV--TRQTMLFSATLDGIVGNMAENITKDPLILKVNS 235
EADRMLDMGF I +IV D P R TM+FSAT + +A + + + L V
Sbjct: 348 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 407
Query: 236 IEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFL 295
+ +NITQ +++V++ ++ LLD L + +VF TK+ AD + D L G+
Sbjct: 408 VGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYA 467
Query: 296 AAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVH 355
+HGD Q R L R G+ ILVAT VAARG+D+ + HV N+DLP E+YVH
Sbjct: 468 CTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVH 527
Query: 356 RIGRTGRAGRNGFAVSLVNHAERMNIKK--IERFT--KQQIP 393
RIGRTGR G G A S N NI K ++ KQ++P
Sbjct: 528 RIGRTGRVGNLGLATSFFNE-RNANITKDLLDLLVEAKQEVP 568
>MGI|MGI:91842 [details] [associations]
symbol:D1Pas1 "DNA segment, Chr 1, Pasteur Institute 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:91842
GO:GO:0007275 GO:GO:0005524 GO:GO:0030154 GO:GO:0003677
GO:GO:0007283 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
KO:K11594 HOVERGEN:HBG015893 EMBL:J04847 EMBL:AK029542
IPI:IPI00133708 PIR:A32378 RefSeq:NP_149068.1 UniGene:Mm.108054
ProteinModelPortal:P16381 SMR:P16381 IntAct:P16381 STRING:P16381
PhosphoSite:P16381 PaxDb:P16381 PRIDE:P16381
Ensembl:ENSMUST00000045108 GeneID:110957 KEGG:mmu:110957 CTD:110957
InParanoid:P16381 OMA:HIVQECD OrthoDB:EOG4S7JPR NextBio:365019
Bgee:P16381 CleanEx:MM_D1PAS1 Genevestigator:P16381
GermOnline:ENSMUSG00000039224 Uniprot:P16381
Length = 660
Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
Identities = 158/411 (38%), Positives = 223/411 (54%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F + + E+++ + YT+PT VQ+ AIP RDL+ +QTGSGKTAAF+LP L
Sbjct: 180 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 239
Query: 62 KFASSK--NKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
+ + + MK+N K Y P LVL PTRELA+Q+ +
Sbjct: 240 QIYTDGPGEALRAMKENGKYGRRKQY------------PISLVLAPTRELAVQIYEEARK 287
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
+ Y +++ + GG +Q++ L R +L+ATPGRL+D M GKI + LVLD
Sbjct: 288 FS-YRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 346
Query: 180 EADRMLDMGFINDIEKIV--DATPV--TRQTMLFSATLDGIVGNMAENITKDPLILKVNS 235
EADRMLDMGF I +IV D P R TM+FSAT + +A + + + L V
Sbjct: 347 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 406
Query: 236 IEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFL 295
+ +NITQ +++V++ ++ LLD L + +VF TK+ AD + D L G+
Sbjct: 407 VGSTSENITQKVVWVEEADKRSFLLDLLNATGKDSLILVFVETKKGADSLEDFLYHEGYA 466
Query: 296 AAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVH 355
+HGD Q R L R G+ ILVAT VAARG+D+ + HV N+DLP E+YVH
Sbjct: 467 CTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVH 526
Query: 356 RIGRTGRAGRNGFAVSLVNHAERMNIKK--IERFT--KQQIPIEVIN-GFE 401
RIGRTGR G G A S N +NI K ++ KQ++P + N FE
Sbjct: 527 RIGRTGRVGNLGLATSFFNE-RNINITKDLLDLLVEAKQEVPSWLENMAFE 576
>RGD|1309586 [details] [associations]
symbol:RGD1309586 "similar to probable ATP-dependent RNA
helicase - mouse" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309586 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 OMA:HIVQECD
OrthoDB:EOG4S7JPR EMBL:CH473985 IPI:IPI00954695
RefSeq:NP_001102328.1 UniGene:Rn.218622 Ensembl:ENSRNOT00000003378
GeneID:364073 KEGG:rno:364073 UCSC:RGD:1309586 CTD:364073
NextBio:684798 Uniprot:D3ZN21
Length = 659
Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
Identities = 158/411 (38%), Positives = 223/411 (54%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F + + E+++ + YT+PT VQ+ AIP RDL+ +QTGSGKTAAF+LP L
Sbjct: 179 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 238
Query: 62 KFASSK--NKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
+ + + MK+N K Y P LVL PTRELA+Q+ +
Sbjct: 239 QIYTDGPGEALRAMKENGKYGRRKQY------------PISLVLAPTRELAVQIYEEARK 286
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
+ Y +++ + GG +Q++ L R +L+ATPGRL+D M GKI + LVLD
Sbjct: 287 FS-YRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 345
Query: 180 EADRMLDMGFINDIEKIV--DATPV--TRQTMLFSATLDGIVGNMAENITKDPLILKVNS 235
EADRMLDMGF I +IV D P R TM+FSAT + +A + + + L V
Sbjct: 346 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 405
Query: 236 IEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFL 295
+ +NITQ +++V++ ++ LLD L + +VF TK+ AD + D L G+
Sbjct: 406 VGSTSENITQKVVWVEEADKRSFLLDLLNATGKDSLILVFVETKKGADSLEDFLYHEGYA 465
Query: 296 AAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVH 355
+HGD Q R L R G+ ILVAT VAARG+D+ + HV N+DLP E+YVH
Sbjct: 466 CTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVH 525
Query: 356 RIGRTGRAGRNGFAVSLVNHAERMNIKK--IERFT--KQQIPIEVIN-GFE 401
RIGRTGR G G A S N +NI K ++ KQ++P + N FE
Sbjct: 526 RIGRTGRVGNLGLATSFFNE-RNINITKDLLDLLVEAKQEVPSWLENMAFE 575
>UNIPROTKB|Q8EIE5 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 531 (192.0 bits), Expect = 6.9e-63, Sum P(2) = 6.9e-63
Identities = 117/306 (38%), Positives = 178/306 (58%)
Query: 90 RLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNP 149
+L K + + LVL PTRELA QV + +K +++ GG+P Q+ L
Sbjct: 62 KLDVKRFRIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHGA 121
Query: 150 EILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLF 209
I++ TPGR++DH++ +++ S+L +LVLDEADRML+MGF ++ I++ +P RQT+LF
Sbjct: 122 HIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLLF 181
Query: 210 SATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRV 269
SAT + ++A+ I +P+++K ++ ++ I Q +DD + + L LL + +
Sbjct: 182 SATFPEQIQSIAKQIMYNPVMVKA-AVTHEKNTIEQHFYQLDDDKSRMQALQLLLLEHKP 240
Query: 270 GQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVA 329
AVVF TKR+ +AD L GF LHGDL Q R+ TL +LVATDVA
Sbjct: 241 ESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVA 300
Query: 330 ARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTK 389
ARG+D+ A+ VFNY + E ++HRIGRTGRAG G A + N + I +E +
Sbjct: 301 ARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIALLEEYLD 360
Query: 390 QQIPIE 395
++I E
Sbjct: 361 REITSE 366
Score = 129 (50.5 bits), Expect = 6.9e-63, Sum P(2) = 6.9e-63
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F ++ L +L+ L +GY + T +Q Q++PA ++G D+I +TGSGKTAAF L L
Sbjct: 1 MAFSTLKLKTELLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLL 60
Query: 61 HKFASSKNKIPVM 73
+K + +I +
Sbjct: 61 NKLDVKRFRIQTL 73
>TIGR_CMR|SO_0897 [details] [associations]
symbol:SO_0897 "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 531 (192.0 bits), Expect = 6.9e-63, Sum P(2) = 6.9e-63
Identities = 117/306 (38%), Positives = 178/306 (58%)
Query: 90 RLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNP 149
+L K + + LVL PTRELA QV + +K +++ GG+P Q+ L
Sbjct: 62 KLDVKRFRIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHGA 121
Query: 150 EILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLF 209
I++ TPGR++DH++ +++ S+L +LVLDEADRML+MGF ++ I++ +P RQT+LF
Sbjct: 122 HIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLLF 181
Query: 210 SATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRV 269
SAT + ++A+ I +P+++K ++ ++ I Q +DD + + L LL + +
Sbjct: 182 SATFPEQIQSIAKQIMYNPVMVKA-AVTHEKNTIEQHFYQLDDDKSRMQALQLLLLEHKP 240
Query: 270 GQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVA 329
AVVF TKR+ +AD L GF LHGDL Q R+ TL +LVATDVA
Sbjct: 241 ESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVA 300
Query: 330 ARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTK 389
ARG+D+ A+ VFNY + E ++HRIGRTGRAG G A + N + I +E +
Sbjct: 301 ARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIALLEEYLD 360
Query: 390 QQIPIE 395
++I E
Sbjct: 361 REITSE 366
Score = 129 (50.5 bits), Expect = 6.9e-63, Sum P(2) = 6.9e-63
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F ++ L +L+ L +GY + T +Q Q++PA ++G D+I +TGSGKTAAF L L
Sbjct: 1 MAFSTLKLKTELLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLL 60
Query: 61 HKFASSKNKIPVM 73
+K + +I +
Sbjct: 61 NKLDVKRFRIQTL 73
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
Identities = 136/310 (43%), Positives = 191/310 (61%)
Query: 97 QPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATP 156
Q R L+LTPTRELA Q+ YG ++ +K+ + GG+ QMQ + + +IL+ATP
Sbjct: 73 QVRALILTPTRELAAQIQDNVMLYGRHLP-LKSAVVFGGVKINPQMQRMCKGADILVATP 131
Query: 157 GRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGI 216
GRL+D N + F L+ILVLDEADRMLDMGFI DI KI+ P RQ +LFSAT
Sbjct: 132 GRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQNLLFSATFSTE 191
Query: 217 VGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFT 276
+ +A+ + +P+ + V+ + + Q I + D+ K +L L+++ Q +VF
Sbjct: 192 IRELAKGLVNNPVEISVSPANSTARTVEQCI-YPADVKKKPDMLVKLVKEGNWQQVLVFM 250
Query: 277 ATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVP 336
TK A+ +A LN G AA +HG+ Q AR R L + + G ++ILVATD+AARGID+P
Sbjct: 251 RTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDIP 310
Query: 337 AITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEV 396
+ V N++LPK EDYVHRIGRTGRAG G A+SLV+ E + IER T+ +P
Sbjct: 311 QLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIERLTQALLPRVN 370
Query: 397 INGFEPKKRI 406
+ GFEP ++
Sbjct: 371 LAGFEPTNQL 380
Score = 170 (64.9 bits), Expect = 9.8e-10, P = 9.8e-10
Identities = 81/277 (29%), Positives = 125/277 (45%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S+GL +LKA+ + GY P+ +Q QAIPA ++G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQ--VTAATE 118
A K P K NQ I T L AQ + V+ R L L+ V
Sbjct: 61 ELLA----KGP--KVRANQVRALILTPTRELA---AQIQDNVMLYGRHLPLKSAVVFGGV 111
Query: 119 RYGLYMKKI-KAISILGGMPYLRQMQLLSRNP------EIL-LATPGRLIDHMNSGKINF 170
+ M+++ K IL P R M L ++N EIL L R++D G I
Sbjct: 112 KINPQMQRMCKGADILVATPG-RLMDLYNQNAVKFDQLEILVLDEADRMLD---MGFIRD 167
Query: 171 SH--LQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDP 228
H L++L + + F +I ++ V + + + + + I
Sbjct: 168 IHKILKLLPEKRQNLLFSATFSTEIRELAKGL-VNNPVEISVSPANSTARTVEQCIYPAD 226
Query: 229 LILKVNSIEK--KQKNITQSILFVDDILHKNRLLDYL 263
+ K + + K K+ N Q ++F+ NRL YL
Sbjct: 227 VKKKPDMLVKLVKEGNWQQVLVFMRTKHGANRLATYL 263
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
Identities = 136/310 (43%), Positives = 191/310 (61%)
Query: 97 QPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATP 156
Q R L+LTPTRELA Q+ YG ++ +K+ + GG+ QMQ + + +IL+ATP
Sbjct: 73 QVRALILTPTRELAAQIQDNVMLYGRHLP-LKSAVVFGGVKINPQMQRMCKGADILVATP 131
Query: 157 GRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGI 216
GRL+D N + F L+ILVLDEADRMLDMGFI DI KI+ P RQ +LFSAT
Sbjct: 132 GRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQNLLFSATFSTE 191
Query: 217 VGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFT 276
+ +A+ + +P+ + V+ + + Q I + D+ K +L L+++ Q +VF
Sbjct: 192 IRELAKGLVNNPVEISVSPANSTARTVEQCI-YPADVKKKPDMLVKLVKEGNWQQVLVFM 250
Query: 277 ATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVP 336
TK A+ +A LN G AA +HG+ Q AR R L + + G ++ILVATD+AARGID+P
Sbjct: 251 RTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDIP 310
Query: 337 AITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEV 396
+ V N++LPK EDYVHRIGRTGRAG G A+SLV+ E + IER T+ +P
Sbjct: 311 QLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIERLTQALLPRVN 370
Query: 397 INGFEPKKRI 406
+ GFEP ++
Sbjct: 371 LAGFEPTNQL 380
Score = 170 (64.9 bits), Expect = 9.8e-10, P = 9.8e-10
Identities = 81/277 (29%), Positives = 125/277 (45%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S+GL +LKA+ + GY P+ +Q QAIPA ++G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQ--VTAATE 118
A K P K NQ I T L AQ + V+ R L L+ V
Sbjct: 61 ELLA----KGP--KVRANQVRALILTPTRELA---AQIQDNVMLYGRHLPLKSAVVFGGV 111
Query: 119 RYGLYMKKI-KAISILGGMPYLRQMQLLSRNP------EIL-LATPGRLIDHMNSGKINF 170
+ M+++ K IL P R M L ++N EIL L R++D G I
Sbjct: 112 KINPQMQRMCKGADILVATPG-RLMDLYNQNAVKFDQLEILVLDEADRMLD---MGFIRD 167
Query: 171 SH--LQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDP 228
H L++L + + F +I ++ V + + + + + I
Sbjct: 168 IHKILKLLPEKRQNLLFSATFSTEIRELAKGL-VNNPVEISVSPANSTARTVEQCIYPAD 226
Query: 229 LILKVNSIEK--KQKNITQSILFVDDILHKNRLLDYL 263
+ K + + K K+ N Q ++F+ NRL YL
Sbjct: 227 VKKKPDMLVKLVKEGNWQQVLVFMRTKHGANRLATYL 263
>UNIPROTKB|P0A8J8 [details] [associations]
symbol:rhlB "RhlB" species:83333 "Escherichia coli K-12"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006401 "RNA
catabolic process" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0006401 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:M87049 GO:GO:0004004 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:M83316 EMBL:X56310
PIR:G65181 RefSeq:NP_418227.1 RefSeq:YP_491659.1
ProteinModelPortal:P0A8J8 SMR:P0A8J8 DIP:DIP-35644N IntAct:P0A8J8
PaxDb:P0A8J8 PRIDE:P0A8J8 EnsemblBacteria:EBESCT00000001927
EnsemblBacteria:EBESCT00000015978 GeneID:12934326 GeneID:948290
KEGG:ecj:Y75_p3395 KEGG:eco:b3780 PATRIC:32123051 EchoBASE:EB0837
EcoGene:EG10844 HOGENOM:HOG000268807 KO:K03732 OMA:HIDGIKY
ProtClustDB:PRK04837 BioCyc:EcoCyc:EG10844-MONOMER
BioCyc:ECOL316407:JW3753-MONOMER Genevestigator:P0A8J8
Uniprot:P0A8J8
Length = 421
Score = 535 (193.4 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 127/307 (41%), Positives = 170/307 (55%)
Query: 94 KPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILL 153
K QPR L++ PTRELA+Q+ A E +K GG Y +Q+++L +IL+
Sbjct: 81 KVNQPRALIMAPTRELAVQIHADAEPLA-EATGLKLGLAYGGDGYDKQLKVLESGVDILI 139
Query: 154 ATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQ--TMLFSA 211
T GRLID+ IN +Q++VLDEADRM D+GFI DI + P Q MLFSA
Sbjct: 140 GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSA 199
Query: 212 TLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQ 271
TL V +A + ++V +K I + LF K RLL L+ ++ +
Sbjct: 200 TLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEE-LFYPSNEEKMRLLQTLIEEEWPDR 258
Query: 272 AVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAAR 331
A++F TK + I L G L GD+ Q R R L+ RG + ILVATDVAAR
Sbjct: 259 AIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDVAAR 318
Query: 332 GIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQ 391
G+ +PA+THVFNYDLP EDYVHRIGRTGRAG +G ++SL +N+ IE +
Sbjct: 319 GLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHS 378
Query: 392 IPIEVIN 398
IP+ N
Sbjct: 379 IPVSKYN 385
Score = 123 (48.4 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F LH V++AL K G+ T +Q A+P ++GRD+ +QTG+GKT AF+ H
Sbjct: 11 FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70
Query: 63 FAS 65
S
Sbjct: 71 LLS 73
>UNIPROTKB|E2RRQ7 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AAEX03026295
Ensembl:ENSCAFT00000022643 Uniprot:E2RRQ7
Length = 706
Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
Identities = 158/405 (39%), Positives = 221/405 (54%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F + + E+++ + YT+PT VQ+ AIP RDL+ +QTGSGKTAAF+LP L
Sbjct: 223 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 282
Query: 62 KFASSK--NKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
+ S + MK+N K Y P LVL PTRELA+Q+ +
Sbjct: 283 QIYSDGPGEALRAMKENGRYGRRKQY------------PISLVLAPTRELAVQIYEEARK 330
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
+ Y +++ + GG +Q++ L R +L+ATPGRL+D M GKI + LVLD
Sbjct: 331 FS-YRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 389
Query: 180 EADRMLDMGFINDIEKIV--DATPV--TRQTMLFSATLDGIVGNMAENITKDPLILKVNS 235
EADRMLDMGF I +IV D P R TM+FSAT + +A + + + L V
Sbjct: 390 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 449
Query: 236 IEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQ---AVVFTATKRDADIIADRLNIS 292
+ +NITQ +++V++ ++ LLD LL G+ +VF TK+ AD + D L
Sbjct: 450 VGSTSENITQKVVWVEESDKRSFLLD-LLNATESGKDSLTLVFVETKKGADSLEDFLYHE 508
Query: 293 GFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPED 352
G+ +HGD Q R L R G+ ILVAT VAARG+D+ + HV N+DLP E+
Sbjct: 509 GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEE 568
Query: 353 YVHRIGRTGRAGRNGFAVSLVNHAERMNIKK--IERFT--KQQIP 393
YVHRIGRTGR G G A S N +NI K ++ KQ++P
Sbjct: 569 YVHRIGRTGRVGNLGLATSFFNE-RNINITKDLLDLLVEAKQEVP 612
>RGD|2314437 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked"
species:10116 "Rattus norvegicus" [GO:0005737 "cytoplasm"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:2314437 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K11594 CTD:8653
EMBL:FJ775727 IPI:IPI00196210 RefSeq:NP_001161137.1
UniGene:Rn.95841 ProteinModelPortal:C9WPN2 PRIDE:C9WPN2
GeneID:100312982 KEGG:rno:100312982 UCSC:RGD:2314437 Uniprot:C9WPN2
Length = 652
Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
Identities = 155/402 (38%), Positives = 219/402 (54%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
NF + + E+++ + YT+PT VQ+ AIP RDL+ +QTGSG TAAF+LP L
Sbjct: 174 NFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGCTAAFLLPILS 233
Query: 62 KFASSK--NKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
+ + + MK+N K Y P LVL PTRELA+Q+ +
Sbjct: 234 QIYTDGPGEALKAMKENGRYGRRKQY------------PISLVLAPTRELAVQIYEEARK 281
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
+ Y +++ + GG ++Q++ L R +L+ATPGRL+D M GKI + LVLD
Sbjct: 282 FS-YRSRVRPCVVYGGADTVQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 340
Query: 180 EADRMLDMGFINDIEKIV--DATPV--TRQTMLFSATLDGIVGNMAENITKDPLILKVNS 235
EADRMLDMGF I +IV D P R TM+FSAT + +A + + + L V
Sbjct: 341 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 400
Query: 236 IEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFL 295
+ +NITQ +++V+++ ++ LLD L R +VF TK+ AD + + L +
Sbjct: 401 VGSTSENITQKVVWVEELDKRSFLLDLLNATGRDSLTLVFVETKKGADSLENFLFQERYA 460
Query: 296 AAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVH 355
+HGD Q R L R GR ILVAT VAARG+D+ + HV N+DLP E+YVH
Sbjct: 461 CTSIHGDRSQKDREEALHQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEYVH 520
Query: 356 RIGRTGRAGRNGFAVSLVNHAERMNIKK--IERFT--KQQIP 393
RIGRTGR G G A S N +NI K ++ KQ++P
Sbjct: 521 RIGRTGRVGNLGLATSFFNE-RNLNITKDLLDLLVEAKQEVP 561
>WB|WBGene00006888 [details] [associations]
symbol:vbh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0032502 "developmental process"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0042006 "masculinization of hermaphroditic
germ-line" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003676 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN EMBL:FO081614
GO:GO:0042006 RefSeq:NP_001021793.1 UniGene:Cel.16952
ProteinModelPortal:Q65XX1 SMR:Q65XX1 IntAct:Q65XX1
MINT:MINT-6669731 STRING:Q65XX1 PaxDb:Q65XX1 PRIDE:Q65XX1
EnsemblMetazoa:Y54E10A.9c.1 EnsemblMetazoa:Y54E10A.9c.2
GeneID:171888 KEGG:cel:CELE_Y54E10A.9 UCSC:Y54E10A.9a CTD:171888
WormBase:Y54E10A.9c InParanoid:Q65XX1 NextBio:873115
ArrayExpress:Q65XX1 Uniprot:Q65XX1
Length = 660
Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
Identities = 161/401 (40%), Positives = 225/401 (56%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL- 60
+F G V++ + + GY+KPT VQ+ +IP ++ RDL+ +QTGSGKTAAF+LP +
Sbjct: 140 HFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQ 199
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H A P M K +T+ R + P LVL+PTRELA+Q+ ++
Sbjct: 200 HILAGG----PDMVKP------PAFTNGRRTYY----PCALVLSPTRELAIQIHKEATKF 245
Query: 121 GLYMKKIKAISILGGMP-YLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y I+ + GG Y Q+ L IL+ATPGRLID + G I + + LVLD
Sbjct: 246 S-YKSNIQTAILYGGRENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLD 304
Query: 180 EADRMLDMGFINDIEKIVDA--TPVT-RQTMLFSATLDGIVGNMAENITKDPLI-LKVNS 235
EADRMLDMGF I KIV P T R T +FSAT + +A++ KD I L V
Sbjct: 305 EADRMLDMGFEPQIRKIVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGR 364
Query: 236 IEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFL 295
+ +NI Q +L+V+++ ++ L++ L+ + +VF TKR A+ +A LN
Sbjct: 365 VGSTSENIEQRLLWVNEMEKRSNLMEILMNEHSENLVLVFVETKRGANELAYFLNRQQIR 424
Query: 296 AAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVH 355
+ +HGDL Q R R LE R G+ ILVAT VAARG+D+P + HV NYDLP ++YVH
Sbjct: 425 SVSIHGDLKQIERERNLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVH 484
Query: 356 RIGRTGRAGRNGFAVSLVNHAER---MNIKKIERFTKQQIP 393
RIGRTGR G G A S N R ++K + + Q++P
Sbjct: 485 RIGRTGRCGNLGIATSFFNDKNRGIGRDLKNLIVESNQEVP 525
>ASPGD|ASPL0000077157 [details] [associations]
symbol:AN10557 species:162425 "Emericella nidulans"
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:0002183 "cytoplasmic translational initiation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0010628 "positive regulation of gene expression" evidence=IEA]
[GO:0097308 "cellular response to farnesol" evidence=IEP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:BN001303 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GNWANAN EMBL:AACD01000077 ProteinModelPortal:C8V8H4 SMR:C8V8H4
PRIDE:C8V8H4 EnsemblFungi:CADANIAT00005985 Uniprot:C8V8H4
Length = 668
Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
Identities = 150/398 (37%), Positives = 218/398 (54%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F + L + ++ + Y PT VQ+ +IP ++GRDL+ +QTGSGKT F+ P L +
Sbjct: 188 FTNPPLDDHLISNIALARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQ 247
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
+ P Q R + A P L+L PTREL Q+ ++
Sbjct: 248 AYQNGPAAPPPSA-AGQFG----------RQRKAYPTSLILAPTRELVSQIFDEARKFA- 295
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
Y ++ + GG Q++ + R ++L+ATPGRL+D + G+I+ +++ L+LDEAD
Sbjct: 296 YRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLILDEAD 355
Query: 183 RMLDMGFINDIEKIVDATPVT----RQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
RMLDMGF I +IV+ + RQT++FSAT + +A + KD + L V +
Sbjct: 356 RMLDMGFEPQIRRIVEGEDMPNVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGS 415
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+NITQ + +V+D ++ LLD L G ++F TKR AD +++ L F A
Sbjct: 416 TSENITQKVEYVEDHDKRSVLLDILHTHGTTGLTLIFVETKRMADALSEFLINQRFPATA 475
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HGD Q R R LE R GR ILVAT VAARG+D+P +THV NYDLP +DYVHRIG
Sbjct: 476 IHGDRTQRERERALEMFRSGRYPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIG 535
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTK---QQIP 393
RTGRAG G A + N R ++ + K Q++P
Sbjct: 536 RTGRAGNTGIATAFFNRGNRGVVRDLIDLLKEAHQEVP 573
>WB|WBGene00012059 [details] [associations]
symbol:T26G10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0010171 GO:GO:0003723 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 KO:K14777
OMA:IFIPSKF EMBL:Z29115 PIR:S40731 RefSeq:NP_499069.1
ProteinModelPortal:P34580 SMR:P34580 STRING:P34580 PaxDb:P34580
EnsemblMetazoa:T26G10.1 GeneID:176321 KEGG:cel:CELE_T26G10.1
UCSC:T26G10.1 CTD:176321 WormBase:T26G10.1 InParanoid:P34580
NextBio:892086 Uniprot:P34580
Length = 489
Score = 526 (190.2 bits), Expect = 1.8e-62, Sum P(2) = 1.8e-62
Identities = 120/286 (41%), Positives = 168/286 (58%)
Query: 101 LVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160
LVLTPTRELA Q+ E G + I A+ I+GG+ Q L+R P I++ATPGRL+
Sbjct: 116 LVLTPTRELAFQIGQQFEALGSGIGLIAAV-IVGGVDMAAQAMALARRPHIIVATPGRLV 174
Query: 161 DHMNSGK-INFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGN 219
DH+ + K N L+ L++DEADR+L+M F +++KI+ P R+T LFSAT+ V
Sbjct: 175 DHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPRERRTYLFSATMTKKVSK 234
Query: 220 MAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATK 279
+ +DP + V+S K N+ Q +FV + +K L YLL + A+VF AT
Sbjct: 235 LERASLRDPARVSVSSRYKTVDNLKQHYIFVPN-KYKETYLVYLLNEHAGNSAIVFCATC 293
Query: 280 RDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAIT 339
IA L G A PLHG + Q R +L + +ILV TDVAARG+D+P +
Sbjct: 294 ATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILVCTDVAARGLDIPHVD 353
Query: 340 HVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIE 385
V NYD+P +DYVHR+GRT RAGR+G A+++V + +KIE
Sbjct: 354 MVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAYQKIE 399
Score = 130 (50.8 bits), Expect = 1.8e-62, Sum P(2) = 1.8e-62
Identities = 23/59 (38%), Positives = 41/59 (69%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+F +G+ + + A ++G+ KP+ +Q+ A+P A+ G+D+I ++TGSGKT AF +P L
Sbjct: 45 SFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVL 103
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 514 (186.0 bits), Expect = 1.8e-62, Sum P(2) = 1.8e-62
Identities = 116/300 (38%), Positives = 184/300 (61%)
Query: 102 VLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLID 161
+L PTRELA Q+ + G M +++ I+GGM + Q + L R P I++ATPGRL+D
Sbjct: 154 ILAPTRELAQQIKETFDSLGSLMG-VRSTCIVGGMNMMDQARDLMRKPHIIIATPGRLMD 212
Query: 162 HMNSGK-INFSHLQILVLDEADRMLDMGFINDIEKIVDATPVT-RQTMLFSATLDGIVGN 219
H+ + K + L+ LV+DEADR+LDM F +++I+ P R T LFSAT+ +
Sbjct: 213 HLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYLFSATMTSKIDK 272
Query: 220 MAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQA-VVFTAT 278
+ +P+ V++ + + Q+++ V L KN L YLL + +G+ ++FT T
Sbjct: 273 LQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL-KNTYLIYLLNEF-IGKTMIIFTRT 330
Query: 279 KRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAI 338
K +A+ ++ N+ F A LHGDL+QN R +L+ + G+ ILVATDVAARG+D+P++
Sbjct: 331 KANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSILVATDVAARGLDIPSV 390
Query: 339 THVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVIN 398
V NYD+P + Y+HR+GRT RAGR+G ++SLV+ + I +IE +++P E ++
Sbjct: 391 DIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVLGKKLPKESVD 450
Score = 142 (55.0 bits), Expect = 1.8e-62, Sum P(2) = 1.8e-62
Identities = 27/61 (44%), Positives = 42/61 (68%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F + L +++A + Y+KPT +Q +AIP A+ G D+I +QTGSGKTAAF +P L+
Sbjct: 82 SFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILN 141
Query: 62 K 62
+
Sbjct: 142 R 142
Score = 42 (19.8 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 91 LRFKPAQPRMLVLTPTRELALQVTAAT 117
+ F P R+L + PT+E + +AT
Sbjct: 239 MEFGPVLDRILKIIPTQERTTYLFSAT 265
Score = 40 (19.1 bits), Expect = 9.9e-52, Sum P(2) = 9.9e-52
Identities = 17/87 (19%), Positives = 34/87 (39%)
Query: 12 VLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL---HKFASSKN 68
++K K + T + E+ A+ + ++ ++ G + A K SK+
Sbjct: 4 IVKRKEKKANDELTSLAEKIRAKALENQKKLIEAEKEGGSESDSEEDATAEKKKVLKSKS 63
Query: 69 KIPVMKKNLNQNNNKIYTHKERLRFKP 95
K V +N N N ++ + L P
Sbjct: 64 KSTVSTQNENTNEDESFESFSELNLVP 90
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 502 (181.8 bits), Expect = 1.9e-62, Sum P(2) = 1.9e-62
Identities = 113/303 (37%), Positives = 181/303 (59%)
Query: 89 ERLRFKPAQPR---MLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLL 145
ERL F+ ++ R +L+L PTRELALQ + E + I + I+GG+ Q L
Sbjct: 250 ERLLFRDSEYRAIRVLILLPTRELALQCQSVMENLAQF-SNITSCLIVGGLSNKAQEVEL 308
Query: 146 SRNPEILLATPGRLIDHM-NSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTR 204
++P++++ATPGRLIDH+ N+ I L+IL+LDEADR+LDMGF ++I KIV++ P R
Sbjct: 309 RKSPDVVIATPGRLIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIVESCPTNR 368
Query: 205 QTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNR---LLD 261
QTMLFSATL+ V +A+ + P+ ++V+++ + + Q + + +R LL
Sbjct: 369 QTMLFSATLNDEVKTLAKLSLQQPIRVQVDALMQVTSTLEQEFVKIKPQHLSDRPAILLS 428
Query: 262 YLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIK 321
R G ++F +K++ + +S AA LHG+L Q R +L+ R G++
Sbjct: 429 LCTRVFNQGGTIIFCRSKKEVHRLRIIFGLSDLKAAELHGNLSQEQRFDSLQQFRDGQVN 488
Query: 322 ILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNI 381
L+A+DVA+RG+D+ + V NY++P +Y+HR+GRT RAG +G + S + +R +
Sbjct: 489 YLLASDVASRGLDIIGVKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDRKLL 548
Query: 382 KKI 384
K I
Sbjct: 549 KDI 551
Score = 163 (62.4 bits), Expect = 1.9e-62, Sum P(2) = 1.9e-62
Identities = 29/60 (48%), Positives = 47/60 (78%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F+ + L +LKA+ K+G+++PT +Q +AIP A++G+D++ S+ TGSGKTAAF+LP L +
Sbjct: 192 FEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLER 251
>UNIPROTKB|E2RN03 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
NextBio:20853120 Uniprot:E2RN03
Length = 482
Score = 497 (180.0 bits), Expect = 2.9e-62, Sum P(2) = 2.9e-62
Identities = 111/295 (37%), Positives = 173/295 (58%)
Query: 101 LVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160
LVLTPTRELA Q++ E G + A+ I+GG+ + Q L++ P I++ATPGRLI
Sbjct: 122 LVLTPTRELAFQISEQFEALGSSIGVQSAV-IVGGIDSMSQSLALAKKPHIVIATPGRLI 180
Query: 161 DHMNSGK-INFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGN 219
DH+ + K N L+ LV+DEADR+L+M F +++KI+ P R+T LFSAT+ V
Sbjct: 181 DHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQK 240
Query: 220 MAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATK 279
+ K+P+ V+S + + + Q LF+ K+ L Y+L + ++F +T
Sbjct: 241 LQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKF-KDTYLVYILNELAGNSFMIFCSTC 299
Query: 280 RDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAIT 339
+ A L GF A PLHG + Q+ R +L + IL+ATDVA+RG+D+P +
Sbjct: 300 NNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVD 359
Query: 340 HVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
V N+D+P +DY+HR+GRT RAGR+G A++ V + ++IE +++P+
Sbjct: 360 VVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKLPV 414
Score = 157 (60.3 bits), Expect = 2.9e-62, Sum P(2) = 2.9e-62
Identities = 29/68 (42%), Positives = 48/68 (70%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
FK +G+ +++ +A ++G+TKPT +Q +AIP A+ GRD+I ++TGSGKT AF LP L+
Sbjct: 52 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 111
Query: 63 FASSKNKI 70
+ ++
Sbjct: 112 LLETPQRL 119
>GENEDB_PFALCIPARUM|PFL1310c [details] [associations]
symbol:PFL1310c "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0016070 "RNA
metabolic process" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014188 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_001350668.1
ProteinModelPortal:Q8I5E7 PRIDE:Q8I5E7
EnsemblProtists:PFL1310c:mRNA GeneID:811314 KEGG:pfa:PFL1310c
EuPathDB:PlasmoDB:PF3D7_1227100 ProtClustDB:CLSZ2500975
Uniprot:Q8I5E7
Length = 742
Score = 517 (187.1 bits), Expect = 3.5e-62, Sum P(2) = 3.5e-62
Identities = 122/342 (35%), Positives = 189/342 (55%)
Query: 76 NLNQNNNKIYTHKERLRF--KPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISIL 133
N N NNN Y + + + + L+L PTREL LQV + + + IK++++
Sbjct: 404 NNNNNNNNSYDYDYDINSSERASDTYGLILLPTRELCLQVLDEIKSFEKNLP-IKSVAVY 462
Query: 134 GGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDI 193
GG+P Q+ L + +I++ATPGRL+D + +G IN +V+DEADR+LDMGF +
Sbjct: 463 GGVPKYYQINNLKKGADIIVATPGRLLDFLENGNINLLKCIYVVIDEADRLLDMGFEKQL 522
Query: 194 EKIVDATPVTRQTMLFSATLDGIVGNMAENITK-DPLILKVNSIE-KKQKNITQSILFVD 251
KI+ +Q + +AT V +A + DP+ +++ E KNI Q+++
Sbjct: 523 RKIMTQVNKNKQLLFLTATWPEQVRKLAYDFCSYDPVKIQIGKNELTANKNIEQNVIISS 582
Query: 252 DILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRT 311
I K +LLD+L + + ++F TKR+ D + L + A +HGD Q R+R
Sbjct: 583 SIDMKKKLLDWLKENYENNKILIFCDTKRNCDNLCKELRYHQYNALSIHGDKQQRERDRI 642
Query: 312 LENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVS 371
L N + R ILVATDVA+RG+D+ I+ V NYD+P EDY+HRIGRTGRAG+ G ++
Sbjct: 643 LNNYKTDRCNILVATDVASRGLDIKNISVVINYDIPNTIEDYIHRIGRTGRAGKKGKSIL 702
Query: 372 LVNHAERMNIKKIERFTKQQIPI-EVINGFEPKKRIRTYYSR 412
++ M +K+ +F K+ I + N P + YSR
Sbjct: 703 FFSYDYYMP-QKL-KFAKELIKLLNKTNQTVPPQLKEIAYSR 742
Score = 138 (53.6 bits), Expect = 3.5e-62, Sum P(2) = 3.5e-62
Identities = 33/82 (40%), Positives = 45/82 (54%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F + HE +L L +++PT +Q+ P A+SG+DLI ++TGSGKT AF+LP
Sbjct: 290 FSDVCFHESILNYLNNK-FSEPTAIQKITWPIALSGKDLIGVAETGSGKTLAFVLPCFMH 348
Query: 63 FASSKNKIPVMKKN--LNQNNN 82
K I N NQNNN
Sbjct: 349 ILKHKEIIQNNNNNKQTNQNNN 370
>TIGR_CMR|GSU_0189 [details] [associations]
symbol:GSU_0189 "ATP-dependent RNA helicase DbpA"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:NP_951250.1
ProteinModelPortal:Q74GQ7 GeneID:2687824 KEGG:gsu:GSU0189
PATRIC:22023124 OMA:VAIASHC BioCyc:GSUL243231:GH27-128-MONOMER
Uniprot:Q74GQ7
Length = 460
Score = 535 (193.4 bits), Expect = 3.7e-62, Sum P(2) = 3.7e-62
Identities = 114/284 (40%), Positives = 166/284 (58%)
Query: 101 LVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160
LVL PTRELA QV R + IK ++I GG+P+ Q+ L +++ TPGRL+
Sbjct: 76 LVLCPTRELADQVGKELRRLARFTDNIKILTICGGVPFGPQLGSLEHGAHVVIGTPGRLL 135
Query: 161 DHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNM 220
DH+ G ++ S L+ LVLDEADRMLDMGF +DI ++ A P RQT+LFSAT + M
Sbjct: 136 DHLRRGSLDLSALRTLVLDEADRMLDMGFQDDISALIAAAPPKRQTLLFSATYPDSIAAM 195
Query: 221 AENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKR 280
+ + ++P+ + V+ + + + + + D + ++ +L R A++F TK
Sbjct: 196 SAGVQREPVEVSVDEVHGE--GAIEQVFYEVDSGQRIEAVERILGHYRPESALIFCNTKL 253
Query: 281 DADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITH 340
+ +A+ L + G+ A +HGDL Q R+R L +LVATDVAARG+D+ ++
Sbjct: 254 ECQEVANALAVRGYAALAIHGDLDQRERDRVLVRFANRSASVLVATDVAARGLDIKELSA 313
Query: 341 VFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKI 384
V NY+L + PE + HRIGRTGRAG G AVSLV E I I
Sbjct: 314 VINYELTRNPEVHTHRIGRTGRAGERGLAVSLVTPRESRLIAAI 357
Score = 118 (46.6 bits), Expect = 3.7e-62, Sum P(2) = 3.7e-62
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F S+ L +L+ L +GY + T +Q ++P ++G+D+I ++TGSGKTAAF + L +
Sbjct: 6 FSSLRLKAPMLRNLASLGYAEMTPIQAHSLPLILAGKDVIARAKTGSGKTAAFGIGLLSR 65
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 523 (189.2 bits), Expect = 3.7e-62, Sum P(2) = 3.7e-62
Identities = 126/319 (39%), Positives = 180/319 (56%)
Query: 85 YTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQ 143
+ H +R+R P +LVL+PTRELA Q+ ++G +I + GG P Q++
Sbjct: 217 FLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGR-SSRISCTCLYGGAPKGPQLR 275
Query: 144 LLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVT 203
L R +I++ATPGRL D + +I+ + LVLDEADRMLDMGF I KIV P
Sbjct: 276 DLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTK 335
Query: 204 RQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK--KQKNITQSILFVDDILHKNRLLD 261
RQT++++AT V +A ++ +P + + ++++ K+ITQ I V + K R L+
Sbjct: 336 RQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAP-MEKQRRLE 394
Query: 262 YLLRDKRVG-QAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRI 320
+LR + G + ++F +TKR D + L F AA +HGD Q R+ L R GR
Sbjct: 395 QILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRT 453
Query: 321 KILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMN 380
+LVATDVAARG+DV I V NYD P EDYVHRIGRTGRAG G A + + +
Sbjct: 454 PVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKH 513
Query: 381 IK---KIERFTKQQIPIEV 396
KI Q++P ++
Sbjct: 514 ASDLIKILEGANQRVPPQI 532
Score = 130 (50.8 bits), Expect = 3.7e-62, Sum P(2) = 3.7e-62
Identities = 23/62 (37%), Positives = 42/62 (67%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPA- 59
M+F++ G +L+ ++ G++ PT +Q Q+ P A+ GRD++ ++TGSGKT +++P
Sbjct: 158 MSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGF 217
Query: 60 LH 61
LH
Sbjct: 218 LH 219
>UNIPROTKB|Q29S22 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
Length = 457
Score = 496 (179.7 bits), Expect = 3.7e-62, Sum P(2) = 3.7e-62
Identities = 110/295 (37%), Positives = 173/295 (58%)
Query: 101 LVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160
LVLTPTRELA Q++ E G + ++ I+GG+ + Q L++ P I++ATPGRLI
Sbjct: 98 LVLTPTRELAFQISEQFEALGSSIG-VQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLI 156
Query: 161 DHMNSGK-INFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGN 219
DH+ + K N L+ LV+DEADR+L+M F +++KI+ P R+T LFSAT+ V
Sbjct: 157 DHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQK 216
Query: 220 MAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATK 279
+ K+P+ V+S + + + Q LF+ K+ L Y+L + ++F +T
Sbjct: 217 LQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKF-KDTYLVYILNELAGNSFMIFCSTC 275
Query: 280 RDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAIT 339
+ A L GF A PLHG + Q+ R +L + IL+ATDVA+RG+D+P +
Sbjct: 276 NNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVD 335
Query: 340 HVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
V N+D+P +DY+HR+GRT RAGR+G A++ V + ++IE +++P+
Sbjct: 336 VVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKLPV 390
Score = 157 (60.3 bits), Expect = 3.7e-62, Sum P(2) = 3.7e-62
Identities = 29/68 (42%), Positives = 48/68 (70%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
FK +G+ +++ +A ++G+TKPT +Q +AIP A+ GRD+I ++TGSGKT AF LP L+
Sbjct: 28 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 87
Query: 63 FASSKNKI 70
+ ++
Sbjct: 88 LLETPQRL 95
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 527 (190.6 bits), Expect = 3.8e-62, Sum P(2) = 3.8e-62
Identities = 123/305 (40%), Positives = 174/305 (57%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P +LVL PTRELALQ+ T ++G +I + GG Q+ L + EI++ATPG
Sbjct: 458 PIVLVLAPTRELALQIQEETNKFG-GTSQISNTCVYGGASKHTQVAALKKGVEIVIATPG 516
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLID + SGK N + LVLDEADRMLDMGF I KI+ RQT++FSAT V
Sbjct: 517 RLIDILESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTLMFSATWPKEV 576
Query: 218 GNMAENITKDPLILKVNSIE-KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFT 276
+A + D + + + S E N+ Q + D K R+L +L R + +VF
Sbjct: 577 QALAHDFLTDHIQVHIGSTEITANHNVRQIVEVCQDFEKKERMLSFLGSVGRDEKVIVFA 636
Query: 277 ATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVP 336
T++ D + L SGF + +HG+ Q R+ L + G + I++ATDVA+RG+D+
Sbjct: 637 ETRKGVDDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVPIMIATDVASRGLDIK 696
Query: 337 AITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLV--NHAERMN-IKKIERFTKQQIP 393
I +V NYD P E Y+HRIGRT RAG +G + SL+ ++A N + K+ KQ+IP
Sbjct: 697 DIKYVVNYDFPNTIEVYIHRIGRTARAGASGVSYSLLTTDNARLANELIKVLTEAKQKIP 756
Query: 394 IEVIN 398
IE+ N
Sbjct: 757 IELSN 761
Score = 132 (51.5 bits), Expect = 3.8e-62, Sum P(2) = 3.8e-62
Identities = 25/60 (41%), Positives = 38/60 (63%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F ++K ++ G+ PT +Q QA P A+ GRD+I ++TGSGKT AF+LP++
Sbjct: 384 MQFTQAPFPGYLMKEIIGAGFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSI 443
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 501 (181.4 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 121/295 (41%), Positives = 165/295 (55%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P +LVL PTRELA+Q+ ++G KIK I GG+P Q++ L + EI++ATPG
Sbjct: 173 PIVLVLAPTRELAVQIQQEASKFGS-SSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPG 231
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLID M S N + LVLDEADRMLDMGF I KIV RQT+ +SAT V
Sbjct: 232 RLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEV 291
Query: 218 GNMAENITKDPLILKVNSIE-KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAV-VF 275
+++ +P + + S + K + I Q + + + N+L+ LL D G + VF
Sbjct: 292 EQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVK-LLEDIMDGSRILVF 350
Query: 276 TATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDV 335
TK+ D I +L + G+ A +HGD Q R+ L R G+ I+ ATDVAARG+DV
Sbjct: 351 LDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDV 410
Query: 336 PAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQ 390
+ +V NYD P EDYVHRIGRTGRAG G A + A K++ ++
Sbjct: 411 KDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKELTNILQE 465
Score = 151 (58.2 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 27/59 (45%), Positives = 43/59 (72%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+F+ +G + VL+ + K G+T+PT +Q Q P A+ GRDLI ++TGSGKT +++LPA+
Sbjct: 100 SFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAI 158
>UNIPROTKB|P21693 [details] [associations]
symbol:dbpA species:83333 "Escherichia coli K-12"
[GO:0003724 "RNA helicase activity" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0033677 "DNA/RNA helicase
activity" evidence=IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0000027 "ribosomal large subunit assembly" evidence=IMP]
[GO:0034459 "ATP-dependent 3'-5' RNA helicase activity"
evidence=IDA] [GO:0019843 "rRNA binding" evidence=IDA] [GO:0043531
"ADP binding" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0043531
GO:GO:0019843 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:X52647 PIR:B64884 RefSeq:NP_415859.1 RefSeq:YP_489613.1
ProteinModelPortal:P21693 SMR:P21693 IntAct:P21693 PRIDE:P21693
EnsemblBacteria:EBESCT00000004879 EnsemblBacteria:EBESCT00000014318
GeneID:12933991 GeneID:947153 KEGG:ecj:Y75_p1320 KEGG:eco:b1343
PATRIC:32117966 EchoBASE:EB0206 EcoGene:EG10210
HOGENOM:HOG000268809 KO:K05591 OMA:HIDPARF ProtClustDB:PRK11776
BioCyc:EcoCyc:EG10210-MONOMER BioCyc:ECOL316407:JW1337-MONOMER
BioCyc:MetaCyc:EG10210-MONOMER Genevestigator:P21693 GO:GO:0034459
GO:GO:0033677 InterPro:IPR005580 Pfam:PF03880 Uniprot:P21693
Length = 457
Score = 540 (195.1 bits), Expect = 6.1e-62, Sum P(2) = 6.1e-62
Identities = 119/287 (41%), Positives = 167/287 (58%)
Query: 97 QPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATP 156
Q + LVL PTRELA QV R ++ K +++ GG P+ Q L P I++ATP
Sbjct: 71 QTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATP 130
Query: 157 GRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGI 216
GRL+DH+ G ++ L LV+DEADRMLDMGF + I+ ++ P +RQT+LFSAT
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190
Query: 217 VGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFT 276
+ ++ + +DPL ++++S + I Q + K LL LL + VVF
Sbjct: 191 IAAISGRVQRDPLAIEIDSTDALPP-IEQQF-YETSSKGKIPLLQRLLSLHQPSSCVVFC 248
Query: 277 ATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVP 336
TK+D + D LN G A LHGDL Q R++TL G ++LVATDVAARG+D+
Sbjct: 249 NTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIK 308
Query: 337 AITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLV--NHAERMNI 381
++ V N++L PE +VHRIGRT RAG +G A+S A+R NI
Sbjct: 309 SLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANI 355
Score = 111 (44.1 bits), Expect = 6.1e-62, Sum P(2) = 6.1e-62
Identities = 25/54 (46%), Positives = 36/54 (66%)
Query: 13 LKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASS 66
L L ++GY T VQ A+PA ++G+D+ V ++TGSGKTAAF L L + +S
Sbjct: 15 LTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDAS 68
>UNIPROTKB|Q9H0S4 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
Genevestigator:Q9H0S4 Uniprot:Q9H0S4
Length = 455
Score = 493 (178.6 bits), Expect = 7.8e-62, Sum P(2) = 7.8e-62
Identities = 110/294 (37%), Positives = 172/294 (58%)
Query: 101 LVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160
LVLTPTRELA Q++ E G + A+ I+GG+ + Q L++ P I++ATPGRLI
Sbjct: 96 LVLTPTRELAFQISEQFEALGSSIGVQSAV-IVGGIDSMSQSLALAKKPHIIIATPGRLI 154
Query: 161 DHMNSGK-INFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGN 219
DH+ + K N L+ LV+DEADR+L+M F +++KI+ P R+T LFSAT+ V
Sbjct: 155 DHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQK 214
Query: 220 MAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATK 279
+ K+P+ V+S + + + Q +F+ K+ L Y+L + ++F +T
Sbjct: 215 LQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKF-KDTYLVYILNELAGNSFMIFCSTC 273
Query: 280 RDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAIT 339
+ A L GF A PLHG + Q+ R +L + IL+ATDVA+RG+D+P +
Sbjct: 274 NNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVD 333
Query: 340 HVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIP 393
V N+D+P +DY+HR+GRT RAGR+G A++ V + ++IE +++P
Sbjct: 334 VVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKLP 387
Score = 157 (60.3 bits), Expect = 7.8e-62, Sum P(2) = 7.8e-62
Identities = 29/68 (42%), Positives = 48/68 (70%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
FK +G+ +++ +A ++G+TKPT +Q +AIP A+ GRD+I ++TGSGKT AF LP L+
Sbjct: 26 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 85
Query: 63 FASSKNKI 70
+ ++
Sbjct: 86 LLETPQRL 93
>TAIR|locus:2076436 [details] [associations]
symbol:AT3G58570 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL137082 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 OMA:KYERGGN EMBL:AY049285
EMBL:BT002731 EMBL:AY088132 IPI:IPI00518094 PIR:T45677
RefSeq:NP_191416.1 UniGene:At.831 ProteinModelPortal:Q9M2F9
SMR:Q9M2F9 STRING:Q9M2F9 PaxDb:Q9M2F9 PRIDE:Q9M2F9
EnsemblPlants:AT3G58570.1 GeneID:825026 KEGG:ath:AT3G58570
GeneFarm:1031 TAIR:At3g58570 InParanoid:Q9M2F9 PhylomeDB:Q9M2F9
ProtClustDB:CLSN2915471 Genevestigator:Q9M2F9 GermOnline:AT3G58570
Uniprot:Q9M2F9
Length = 646
Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
Identities = 159/405 (39%), Positives = 217/405 (53%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F I L E + + + Y KPT VQ AIP +GRDL+ +QTGSGKTAAF P +
Sbjct: 148 FAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISG 207
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLR-FKPAQPRMLVLTPTRELALQVTAATERYG 121
+MK H ER R + P ++L+PTRELA Q+ ++
Sbjct: 208 ---------IMKDQ----------HIERPRGVRGVYPLAVILSPTRELACQIHDEARKFS 248
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
Y +K + GG P +Q++ L R +IL+ATPGRL D + G+++ ++ L LDEA
Sbjct: 249 -YQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEA 307
Query: 182 DRMLDMGFINDIEKIVDAT----PVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
DRMLDMGF I KIV P RQTMLFSAT + +A + + + L V +
Sbjct: 308 DRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVG 367
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVG----QAV--VFTATKRDADIIADRLNI 291
I Q + FV D ++ L+D L + G QA+ VF TK+ AD + + L I
Sbjct: 368 SSTDLIVQRVEFVHDSDKRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCI 427
Query: 292 SGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPE 351
+GF A +HGD Q R L + + GR ILVATDVAARG+D+P + HV N+DLP +
Sbjct: 428 NGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDID 487
Query: 352 DYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTK---QQIP 393
DYVHRIGRTGRAG +G A + N K + + Q++P
Sbjct: 488 DYVHRIGRTGRAGNSGLATAFFNDNNTTMAKPLAELMQEANQEVP 532
>SGD|S000003931 [details] [associations]
symbol:DRS1 "Nucleolar DEAD-box protein required for ribosome
assembly and function" species:4932 "Saccharomyces cerevisiae"
[GO:0000027 "ribosomal large subunit assembly" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000003931 GO:GO:0005524 GO:GO:0005730
EMBL:BK006945 GO:GO:0003723 GO:GO:0030687 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 EMBL:X91488
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
KO:K13181 OrthoDB:EOG4B01XM EMBL:L00683 EMBL:Z73113 PIR:S64750
RefSeq:NP_013093.1 ProteinModelPortal:P32892 SMR:P32892
DIP:DIP-6471N IntAct:P32892 MINT:MINT-648259 STRING:P32892
PaxDb:P32892 PeptideAtlas:P32892 EnsemblFungi:YLL008W GeneID:850652
KEGG:sce:YLL008W CYGD:YLL008w OMA:RIRKRDH NextBio:966605
Genevestigator:P32892 GermOnline:YLL008W Uniprot:P32892
Length = 752
Score = 491 (177.9 bits), Expect = 1.2e-61, Sum P(2) = 1.2e-61
Identities = 112/298 (37%), Positives = 173/298 (58%)
Query: 89 ERLRFKPAQ---PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLL 145
ERL +KPA+ R++VL PTRELA+QV ++ ++ I +GG+ +Q Q+L
Sbjct: 291 ERLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQML 350
Query: 146 SRNPEILLATPGRLIDHM-NSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTR 204
P+I++ATPGR IDH+ NS N ++ILV+DEADRML+ GF +++ +I+ P R
Sbjct: 351 KSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNR 410
Query: 205 QTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILH-KNRLLDYL 263
Q +LFSAT++ + ++ K P+ + ++ +K +TQ + + H K LL L
Sbjct: 411 QNLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNL 470
Query: 264 LRD-KRVGQA--VVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRI 320
+R GQ VVF A K A + + + G LHG L Q R ++ + +
Sbjct: 471 IRKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEV 530
Query: 321 KILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAER 378
+L+ TD+A+RG+D+P I V NYD+PK E Y+HR+GRT RAGR G +V+ V + +
Sbjct: 531 PVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQ 588
Score = 165 (63.1 bits), Expect = 1.2e-61, Sum P(2) = 1.2e-61
Identities = 32/69 (46%), Positives = 43/69 (62%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
NF S+ L VLK L +GY KP+ +Q IP A+ G+D+I + TGSGKTAAFM+P +
Sbjct: 232 NFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 291
Query: 62 KFASSKNKI 70
+ KI
Sbjct: 292 RLLYKPAKI 300
>UNIPROTKB|F1SQ03 [details] [associations]
symbol:LOC100524536 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GLKSICI EMBL:CU927956 RefSeq:XP_003135023.1
ProteinModelPortal:F1SQ03 Ensembl:ENSSSCT00000013311
GeneID:100524536 Uniprot:F1SQ03
Length = 630
Score = 526 (190.2 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 123/318 (38%), Positives = 195/318 (61%)
Query: 92 RFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEI 151
R K P MLVLTPTRELALQV A +Y Y K +K++ I GG Q+Q + + +I
Sbjct: 293 RGKRNGPGMLVLTPTRELALQVGAECSKYS-Y-KGLKSVCIYGGGNRKGQIQDIMKGVDI 350
Query: 152 LLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIV-DATPVTRQTMLFS 210
++ATPGRL D + +N + LVLDEAD+MLD+GF + I KI+ D P RQT++ S
Sbjct: 351 IIATPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRP-DRQTIMTS 409
Query: 211 ATLDGIVGNMAENITKDPLILKVNSIEKKQKN-ITQSILFVDDILHKNRLLDYLLRDKRV 269
AT + +A + K+P+++ V +++ + + Q+I+ + ++ ++L
Sbjct: 410 ATWPDTIRQLAHSYLKEPMLVYVGTLDLVAVDTVKQNIIITTEEEKRSLFQEFLQSLSPK 469
Query: 270 GQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVA 329
+ +VF + K AD ++ L+I G LHGD Q+ R R L++ + G++KIL+ATD+A
Sbjct: 470 DKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKVKILIATDLA 529
Query: 330 ARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAE-RMNIKKIERFT 388
+RG+DV +THVFNY+ P+ E+YVHR+GRTGRAG+ G +V+L+ + ++ + IE
Sbjct: 530 SRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDWKVAGELIEILQ 589
Query: 389 K--QQIPIEVINGFEPKK 404
+ Q IP ++++ E K
Sbjct: 590 RANQSIPEDLLSMAEQYK 607
Score = 122 (48.0 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 23/58 (39%), Positives = 39/58 (67%)
Query: 5 SIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPA-LH 61
+ G + ++K++ K G+ KPT +Q QA P + G DLI +QTG+GKT ++++P +H
Sbjct: 228 AFGPYPELMKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIH 285
>UNIPROTKB|I3LHW0 [details] [associations]
symbol:I3LHW0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 Ensembl:ENSSSCT00000032137 OMA:FESQIMK
Uniprot:I3LHW0
Length = 621
Score = 526 (190.2 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 123/318 (38%), Positives = 195/318 (61%)
Query: 92 RFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEI 151
R K P MLVLTPTRELALQV A +Y Y K +K++ I GG Q+Q + + +I
Sbjct: 284 RGKRNGPGMLVLTPTRELALQVGAECSKYS-Y-KGLKSVCIYGGGNRKGQIQDIMKGVDI 341
Query: 152 LLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIV-DATPVTRQTMLFS 210
++ATPGRL D + +N + LVLDEAD+MLD+GF + I KI+ D P RQT++ S
Sbjct: 342 IIATPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRP-DRQTIMTS 400
Query: 211 ATLDGIVGNMAENITKDPLILKVNSIEKKQKN-ITQSILFVDDILHKNRLLDYLLRDKRV 269
AT + +A + K+P+++ V +++ + + Q+I+ + ++ ++L
Sbjct: 401 ATWPDTIRQLAHSYLKEPMLVYVGTLDLVAVDTVKQNIIITTEEEKRSLFQEFLQSLSPK 460
Query: 270 GQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVA 329
+ +VF + K AD ++ L+I G LHGD Q+ R R L++ + G++KIL+ATD+A
Sbjct: 461 DKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKVKILIATDLA 520
Query: 330 ARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAE-RMNIKKIERFT 388
+RG+DV +THVFNY+ P+ E+YVHR+GRTGRAG+ G +V+L+ + ++ + IE
Sbjct: 521 SRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDWKVAGELIEILQ 580
Query: 389 K--QQIPIEVINGFEPKK 404
+ Q IP ++++ E K
Sbjct: 581 RANQSIPEDLLSMAEQYK 598
Score = 122 (48.0 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 23/58 (39%), Positives = 39/58 (67%)
Query: 5 SIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPA-LH 61
+ G + ++K++ K G+ KPT +Q QA P + G DLI +QTG+GKT ++++P +H
Sbjct: 219 AFGPYPELMKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIH 276
>UNIPROTKB|Q9KKW0 [details] [associations]
symbol:VCA0990 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GenomeReviews:AE003853_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:IGAKENA ProtClustDB:CLSK869861
EMBL:AE004426 PIR:H82390 RefSeq:NP_233374.1
ProteinModelPortal:Q9KKW0 DNASU:2612329 GeneID:2612329
KEGG:vch:VCA0990 PATRIC:20086502 Uniprot:Q9KKW0
Length = 428
Score = 517 (187.1 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 115/312 (36%), Positives = 174/312 (55%)
Query: 89 ERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRN 148
ERL+ P Q + LVL PTRELA+QV+ G + + + + GG+ Q L+ N
Sbjct: 82 ERLKTSPEQ-QALVLVPTRELAMQVSEVLTHVGTALG-LNTLCLCGGVDKTEQQNALAEN 139
Query: 149 PEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTML 208
P IL+AT GRL D SG + + + LVLDEADR+LDMGF ++ + T RQT++
Sbjct: 140 PNILVATTGRLFDLTQSG-LRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQTVM 198
Query: 209 FSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKR 268
SAT + A+ + + P + N E Q L++ + K + L LL+ +
Sbjct: 199 CSATFSDDLKLKAQQLMRAPTQVSANP-ENSINQAVQETLYLVNKGSKTQALVALLKQHQ 257
Query: 269 VGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDV 328
Q +VF K +AD + +LN +G +A LHGD Q+ R L + G ++L+ATD+
Sbjct: 258 WPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLIATDL 317
Query: 329 AARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFT 388
ARGI + + V N++LP E YVHR+GRT RAG++G A+SLV H E + T
Sbjct: 318 LARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNATRTLT 377
Query: 389 KQQIPIEVINGF 400
++++P++ + GF
Sbjct: 378 QRELPVQNLEGF 389
Score = 131 (51.2 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 30/90 (33%), Positives = 52/90 (57%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+ L +++AL K T+P+ +Q IPA ++G+D+ + TGSGKT A+ LP L
Sbjct: 23 MSFSSLALSADLIQALPKA-ITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 81
Query: 61 HKFASSKNK---IPVMKKNLNQNNNKIYTH 87
+ +S + + V + L +++ TH
Sbjct: 82 ERLKTSPEQQALVLVPTRELAMQVSEVLTH 111
Score = 37 (18.1 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 441 TSISASSKNSIN 452
T +SA+ +NSIN
Sbjct: 219 TQVSANPENSIN 230
>TIGR_CMR|VC_A0990 [details] [associations]
symbol:VC_A0990 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GenomeReviews:AE003853_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:IGAKENA ProtClustDB:CLSK869861
EMBL:AE004426 PIR:H82390 RefSeq:NP_233374.1
ProteinModelPortal:Q9KKW0 DNASU:2612329 GeneID:2612329
KEGG:vch:VCA0990 PATRIC:20086502 Uniprot:Q9KKW0
Length = 428
Score = 517 (187.1 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 115/312 (36%), Positives = 174/312 (55%)
Query: 89 ERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRN 148
ERL+ P Q + LVL PTRELA+QV+ G + + + + GG+ Q L+ N
Sbjct: 82 ERLKTSPEQ-QALVLVPTRELAMQVSEVLTHVGTALG-LNTLCLCGGVDKTEQQNALAEN 139
Query: 149 PEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTML 208
P IL+AT GRL D SG + + + LVLDEADR+LDMGF ++ + T RQT++
Sbjct: 140 PNILVATTGRLFDLTQSG-LRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQTVM 198
Query: 209 FSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKR 268
SAT + A+ + + P + N E Q L++ + K + L LL+ +
Sbjct: 199 CSATFSDDLKLKAQQLMRAPTQVSANP-ENSINQAVQETLYLVNKGSKTQALVALLKQHQ 257
Query: 269 VGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDV 328
Q +VF K +AD + +LN +G +A LHGD Q+ R L + G ++L+ATD+
Sbjct: 258 WPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLIATDL 317
Query: 329 AARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFT 388
ARGI + + V N++LP E YVHR+GRT RAG++G A+SLV H E + T
Sbjct: 318 LARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNATRTLT 377
Query: 389 KQQIPIEVINGF 400
++++P++ + GF
Sbjct: 378 QRELPVQNLEGF 389
Score = 131 (51.2 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 30/90 (33%), Positives = 52/90 (57%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+ L +++AL K T+P+ +Q IPA ++G+D+ + TGSGKT A+ LP L
Sbjct: 23 MSFSSLALSADLIQALPKA-ITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 81
Query: 61 HKFASSKNK---IPVMKKNLNQNNNKIYTH 87
+ +S + + V + L +++ TH
Sbjct: 82 ERLKTSPEQQALVLVPTRELAMQVSEVLTH 111
Score = 37 (18.1 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 441 TSISASSKNSIN 452
T +SA+ +NSIN
Sbjct: 219 TQVSANPENSIN 230
>MGI|MGI:1915005 [details] [associations]
symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
Length = 455
Score = 496 (179.7 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 110/295 (37%), Positives = 173/295 (58%)
Query: 101 LVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160
LVLTPTRELA Q++ E G + ++ I+GG+ + Q L++ P I++ATPGRLI
Sbjct: 96 LVLTPTRELAFQISEQFEALGSSIG-VQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLI 154
Query: 161 DHMNSGK-INFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGN 219
DH+ + K N L+ LV+DEADR+L+M F +++KI+ P R+T LFSAT+ V
Sbjct: 155 DHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQK 214
Query: 220 MAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATK 279
+ K+P+ V+S + + + Q LF+ K+ L Y+L + ++F +T
Sbjct: 215 LQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKF-KDTYLVYILNELAGNSFMIFCSTC 273
Query: 280 RDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAIT 339
+ A L GF A PLHG + Q+ R +L + IL+ATDVA+RG+D+P +
Sbjct: 274 NNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVD 333
Query: 340 HVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
V N+D+P +DY+HR+GRT RAGR+G A++ V + ++IE +++P+
Sbjct: 334 VVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKLPV 388
Score = 152 (58.6 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 28/68 (41%), Positives = 47/68 (69%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
FK +G+ +++ +A ++G+ KPT +Q +AIP A+ GRD+I ++TGSGKT AF LP L+
Sbjct: 26 FKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 85
Query: 63 FASSKNKI 70
+ ++
Sbjct: 86 LLETPQRL 93
>UNIPROTKB|G3V727 [details] [associations]
symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
Uniprot:G3V727
Length = 455
Score = 496 (179.7 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 110/295 (37%), Positives = 173/295 (58%)
Query: 101 LVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160
LVLTPTRELA Q++ E G + ++ I+GG+ + Q L++ P I++ATPGRLI
Sbjct: 96 LVLTPTRELAFQISEQFEALGSSIG-VQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLI 154
Query: 161 DHMNSGK-INFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGN 219
DH+ + K N L+ LV+DEADR+L+M F +++KI+ P R+T LFSAT+ V
Sbjct: 155 DHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQK 214
Query: 220 MAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATK 279
+ K+P+ V+S + + + Q LF+ K+ L Y+L + ++F +T
Sbjct: 215 LQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKF-KDTYLVYILNELAGNSFMIFCSTC 273
Query: 280 RDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAIT 339
+ A L GF A PLHG + Q+ R +L + IL+ATDVA+RG+D+P +
Sbjct: 274 NNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVD 333
Query: 340 HVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
V N+D+P +DY+HR+GRT RAGR+G A++ V + ++IE +++P+
Sbjct: 334 VVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKLPV 388
Score = 152 (58.6 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 28/68 (41%), Positives = 47/68 (69%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
FK +G+ +++ +A ++G+ KPT +Q +AIP A+ GRD+I ++TGSGKT AF LP L+
Sbjct: 26 FKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 85
Query: 63 FASSKNKI 70
+ ++
Sbjct: 86 LLETPQRL 93
>UNIPROTKB|F1NVJ6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00660000095174 OMA:VLDITHV
EMBL:AADN02002507 EMBL:AADN02002508 IPI:IPI00594090
Ensembl:ENSGALT00000025673 Uniprot:F1NVJ6
Length = 642
Score = 529 (191.3 bits), Expect = 1.6e-61, Sum P(2) = 1.6e-61
Identities = 127/317 (40%), Positives = 191/317 (60%)
Query: 94 KPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILL 153
K P MLVL PTRELALQV A +Y Y K K+I I GG Q+ ++++ +I++
Sbjct: 311 KRGGPGMLVLAPTRELALQVEAECLKY-TY-KGFKSICIYGGGDRKAQINVVTKGVDIVI 368
Query: 154 ATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKI-VDATPVTRQTMLFSAT 212
ATPGRL D + IN + L +EADRMLDMGF I KI +D P RQT++ SAT
Sbjct: 369 ATPGRLNDLQMNNFINLKSITYLA-NEADRMLDMGFEPQIMKILIDVRP-DRQTVMMSAT 426
Query: 213 LDGIVGNMAENITKDPLILKVNSIEKKQKN-ITQSILFVDDILHKNRLLDYLLRDKRVGQ 271
V +A++ ++P+I+ V +++ N + Q ++ +++ K + +++ K +
Sbjct: 427 WPDGVRRLAKSYLRNPMIVYVGTLDLAAVNTVEQKVIVINEEEKKAFMENFIDSMKPKDK 486
Query: 272 AVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAAR 331
A++F K AD IA L + G LHGD Q R + L++ ++G+++ILVATD+A+R
Sbjct: 487 AIIFVGKKSTADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKKGKVRILVATDLASR 546
Query: 332 GIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAE---RMNIKKIERFT 388
G+DV ITHVFN+D P+ E+YVHR+GRTGRAGR G AV+L+ + + I +
Sbjct: 547 GLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLITKKDWKAASELIDILQRA 606
Query: 389 KQQIPIEVINGFEPKKR 405
KQ +P E+I+ E K+
Sbjct: 607 KQVVPDELISMAERYKQ 623
Score = 118 (46.6 bits), Expect = 1.6e-61, Sum P(2) = 1.6e-61
Identities = 26/64 (40%), Positives = 38/64 (59%)
Query: 12 VLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIP 71
++ + K G+ KPT +Q QA P + G DLI +QTG+GKT A+++P AS IP
Sbjct: 251 IMANIRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLASQP--IP 308
Query: 72 VMKK 75
K+
Sbjct: 309 KDKR 312
>TIGR_CMR|GSU_0522 [details] [associations]
symbol:GSU_0522 "ATP-dependent RNA helicase RhlB"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732
RefSeq:NP_951580.1 ProteinModelPortal:Q74FT4 GeneID:2685920
KEGG:gsu:GSU0522 PATRIC:22023799 OMA:LAYEFMN ProtClustDB:CLSK827899
BioCyc:GSUL243231:GH27-482-MONOMER Uniprot:Q74FT4
Length = 443
Score = 523 (189.2 bits), Expect = 1.6e-61, Sum P(2) = 1.6e-61
Identities = 112/301 (37%), Positives = 179/301 (59%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMK-KIKAISILGGMPYLRQMQLLSRNPEILLATP 156
PR ++L PTREL +Q+ + G + I+AI GG+ Y++Q L ++++ TP
Sbjct: 75 PRAIILAPTRELVVQIEKDAQVLGAHCGFTIQAI--YGGVDYMKQKNALKEGADVVVGTP 132
Query: 157 GRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPV--TRQTMLFSATLD 214
GRLID++ + +++LV+DEADRM DMGFI D+ I+ P RQ ++FSATL+
Sbjct: 133 GRLIDYLKQKVYSLKEIEMLVIDEADRMFDMGFIADLRFILRRLPPYDKRQNLMFSATLN 192
Query: 215 GIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVV 274
V +A P + V + + + Q +L+ K LL LLR + + + ++
Sbjct: 193 QRVMELAYEFMNVPEKVAVTPEQMTAERVEQ-VLYHVGRKEKFPLLLGLLRKEGMERTMI 251
Query: 275 FTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGID 334
F TKR+A+ + +RLN + F + GD+ Q R + LE+ + G++ I++ATDVA+RG+
Sbjct: 252 FVNTKREAEFLDERLNANDFPCRVISGDVEQRKRLKILEDFKSGKLPIMIATDVASRGLH 311
Query: 335 VPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
+ ++HV NYDLP+ EDYVHRIGRT RAG G A+S+ + +++ I + K +IP+
Sbjct: 312 IDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAISMADEDGAFHLEAIHEYIKDKIPV 371
Query: 395 E 395
E
Sbjct: 372 E 372
Score = 124 (48.7 bits), Expect = 1.6e-61, Sum P(2) = 1.6e-61
Identities = 23/66 (34%), Positives = 40/66 (60%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F + L E V++ + G++ T +QE+ +P ++ G+D+ +QTG+GKTAAF++
Sbjct: 1 MKFADLNLPEQVMQGVADAGFSDCTPIQEKTLPLSLGGKDVAGQAQTGTGKTAAFLISLF 60
Query: 61 HKFASS 66
K S
Sbjct: 61 TKLLRS 66
>UNIPROTKB|D3IVZ2 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 EMBL:DAAA02075532
EMBL:GQ259590 IPI:IPI00955537 UniGene:Bt.89461
Ensembl:ENSBTAT00000065838 OMA:MSHEAVK Uniprot:D3IVZ2
Length = 661
Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 152/402 (37%), Positives = 217/402 (53%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F + + E+++ + YT+PT VQ+ AIP RDL+ +QTGSGKTAAF+LP L
Sbjct: 181 SFSDVAMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240
Query: 62 KFASSK--NKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
+ + + +K++ K Y P LVL PTRELA+Q+ +
Sbjct: 241 QIYTDGPGEALKAVKESGRYGRRKQY------------PISLVLAPTRELAVQIYEEARK 288
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
+ Y ++ + GG +Q++ L R +L+ATPGRL+D M GKI + LVLD
Sbjct: 289 FS-YRSRVLPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 347
Query: 180 EADRMLDMGFINDIEKIV--DATPV--TRQTMLFSATLDGIVGNMAENITKDPLILKVNS 235
EADRMLDMGF I +I+ D P R TM+FSAT + +A + + + L V
Sbjct: 348 EADRMLDMGFEPQIRRIIEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 407
Query: 236 IEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFL 295
+ +NITQ +++V++ ++ LLD L +VF TK+ AD + D L G+
Sbjct: 408 VGSTSENITQKVVWVEEADKRSFLLDLLNATGTDSLTLVFVETKKGADSLEDFLYHEGYA 467
Query: 296 AAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVH 355
+HGD Q R L R G+ ILVAT VAARG+D+ + HV N+DLP E+YVH
Sbjct: 468 CTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPGDIEEYVH 527
Query: 356 RIGRTGRAGRNGFAVSLVNHAERMNIKK--IERFT--KQQIP 393
RIGRTGR G G A S N +NI K ++ KQ++P
Sbjct: 528 RIGRTGRVGNLGLATSFFNE-RNINISKDLLDLLVEAKQEVP 568
>TAIR|locus:2130918 [details] [associations]
symbol:AT4G16630 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 EMBL:Z97341 EMBL:AL161544 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000265456 KO:K13181
OMA:RIRKRDH EMBL:AJ010475 EMBL:AK228353 IPI:IPI00542014 PIR:D71433
PIR:T51310 RefSeq:NP_193396.3 UniGene:At.49
ProteinModelPortal:Q9ZRZ8 SMR:Q9ZRZ8 IntAct:Q9ZRZ8 STRING:Q9ZRZ8
PaxDb:Q9ZRZ8 PRIDE:Q9ZRZ8 EnsemblPlants:AT4G16630.1 GeneID:827364
KEGG:ath:AT4G16630 GeneFarm:955 TAIR:At4g16630 InParanoid:Q9ZRZ8
PhylomeDB:Q9ZRZ8 ProtClustDB:CLSN2690957 Genevestigator:Q9ZRZ8
GermOnline:AT4G16630 Uniprot:Q9ZRZ8
Length = 789
Score = 507 (183.5 bits), Expect = 2.1e-61, Sum P(2) = 2.1e-61
Identities = 117/316 (37%), Positives = 182/316 (57%)
Query: 89 ERLRFKPAQ---PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLL 145
ERL F+P + R+L+LTPTRELA+Q+ + + + IK I+GG+ Q +L
Sbjct: 227 ERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTD-IKCGLIVGGLSVREQEVVL 285
Query: 146 SRNPEILLATPGRLIDHM-NSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTR 204
P+I++ATPGR+IDH+ NS ++ L +L+LDEADR+L GF +I ++V P R
Sbjct: 286 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRR 345
Query: 205 QTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNR---LLD 261
QTMLFSAT+ V + + PL L + ++ +T+ ++ + N+ LL
Sbjct: 346 QTMLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLS 405
Query: 262 YLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIK 321
R + + ++F+ TK+ A + ++G AA LHG+L Q R +LE R+ +
Sbjct: 406 LCTRTFK-SKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVD 464
Query: 322 ILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNI 381
L+ATDVAARG+D+ + V NY P+ + YVHR+GRT RAGR G+AV+ V ++R +
Sbjct: 465 FLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLL 524
Query: 382 KKIERFTKQQIPIEVI 397
K I + ++ VI
Sbjct: 525 KVIAKKVGSKLKSRVI 540
Score = 148 (57.2 bits), Expect = 2.1e-61, Sum P(2) = 2.1e-61
Identities = 30/60 (50%), Positives = 39/60 (65%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F + L +L+A +GY KPT +Q IP A++GRDL S+ TGSGKTAAF LP L +
Sbjct: 169 FMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLER 228
Score = 37 (18.1 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 8/36 (22%), Positives = 19/36 (52%)
Query: 75 KNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELA 110
+N+ ++ ++IY +R F + + LV ++ A
Sbjct: 583 ENMLEHRDEIYARPKRTWFMTEKEKKLVAQAEKDSA 618
>UNIPROTKB|I3LDV0 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:TILWVYE EMBL:FP565155
Ensembl:ENSSSCT00000028884 Uniprot:I3LDV0
Length = 667
Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
Identities = 154/405 (38%), Positives = 219/405 (54%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F + + E+++ + YT+PT VQ+ AIP RDL+ +QTGSGKTAAF+LP L
Sbjct: 182 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 241
Query: 62 KFASSK--NKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
+ + + +K+N K Y P LVL PTRELA+Q+ +
Sbjct: 242 QIYTDGPGEALKAVKENGRYGRRKQY------------PISLVLAPTRELAVQIYEEARK 289
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
+ Y +++ + GG +Q++ L R +L+ATPGRL+D M GKI + LVLD
Sbjct: 290 FS-YRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 348
Query: 180 EADRMLDMGFINDIEKIV--DATPV--TRQTMLFSATLDGIVGNMAENITKDPLILKVNS 235
EADRMLDMGF I +IV D P R TM+FSAT + +A + + + L V
Sbjct: 349 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 408
Query: 236 IEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFL 295
+ +NITQ +++V++ ++ LLD L + +VF TK+ AD + D L G+
Sbjct: 409 VGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYA 468
Query: 296 AAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVH 355
+HGD Q R L R G+ ILVAT VAARG+D+ + HV N+DLP E+YVH
Sbjct: 469 CTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVH 528
Query: 356 RIGRTGRAGRNGF---AVSLVNHAERMNIKK--IERFT--KQQIP 393
RIGRTGR G G A S N +NI K ++ KQ++P
Sbjct: 529 RIGRTGRVGNLGLIGLATSFFNE-RNINITKDLLDLLVEAKQEVP 572
>UNIPROTKB|O05855 [details] [associations]
symbol:rhlE "PROBABLE ATP-DEPENDENT RNA HELICASE RHLE"
species:83332 "Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell
wall" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005618
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003676
EMBL:BX842582 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
HOGENOM:HOG000268807 EMBL:CP003248 PIR:D70595 RefSeq:NP_217727.1
RefSeq:NP_337835.1 RefSeq:YP_006516683.1 SMR:O05855
EnsemblBacteria:EBMYCT00000003215 EnsemblBacteria:EBMYCT00000071518
GeneID:13318029 GeneID:888840 GeneID:923099 KEGG:mtc:MT3307
KEGG:mtu:Rv3211 KEGG:mtv:RVBD_3211 PATRIC:18129030
TubercuList:Rv3211 OMA:RWQLIDK ProtClustDB:CLSK792349
Uniprot:O05855
Length = 527
Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
Identities = 147/389 (37%), Positives = 211/389 (54%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F +G+ + +++AL + G +P +QE +P A+ G D+I ++TG GKT AF +P L +
Sbjct: 12 FAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQR 71
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
S P+ PR LV+ PTREL LQVT G
Sbjct: 72 ITSGDGTRPLT----------------------GAPRALVVVPTRELCLQVTDDLATAGK 109
Query: 123 YM-------------KKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKIN 169
Y+ +++ +SI GG PY Q++ L ++++ TPGRL+D G +
Sbjct: 110 YLTAGPDTDDAAAVRRRLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQ 169
Query: 170 FSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPL 229
L +LVLDEAD MLD+GF+ DIE+I+ P RQ+MLFSAT+ + +A P
Sbjct: 170 LGGLSVLVLDEADEMLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPT 229
Query: 230 ILKVNSIEKKQ-KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADR 288
++ + + T+ ++ L K L+ +L+ + G ++FT TKR A +AD
Sbjct: 230 HIRAEAPHSSAVHDATEQFVYRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADE 289
Query: 289 LNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPK 348
L GF +HGDL Q AR + L+ R G I +LVATDVAARGID+ +THV NY P+
Sbjct: 290 LTERGFAVGAVHGDLGQLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPE 349
Query: 349 FPEDYVHRIGRTGRAGRNGFAVSLVNHAE 377
+ YVHRIGRTGRAGR G AV+LV+ E
Sbjct: 350 DEKMYVHRIGRTGRAGRTGVAVTLVDWDE 378
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 496 (179.7 bits), Expect = 5.4e-61, Sum P(2) = 5.4e-61
Identities = 109/294 (37%), Positives = 172/294 (58%)
Query: 101 LVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160
LVLTPTRELA Q++ E G + A+ I+GG+ + Q L++ P I++ATPGRL+
Sbjct: 97 LVLTPTRELAFQISEQFEALGSSIGVHSAV-IVGGIDSMSQSLALAKKPHIIIATPGRLV 155
Query: 161 DHMNSGK-INFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGN 219
DH+ + K N L+ LV+DEADR+L+M F +++KI+ P R+T LFSAT+ V
Sbjct: 156 DHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKQVQK 215
Query: 220 MAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATK 279
+ K+P+ V+S + + + Q +F+ K+ L Y+L + ++F +T
Sbjct: 216 LQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKF-KDSYLVYILNELAGNSFMIFCSTC 274
Query: 280 RDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAIT 339
+ A L GF A PLHG + QN R +L + IL+ATDVA+RG+D+P +
Sbjct: 275 NNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSILLATDVASRGLDIPHVD 334
Query: 340 HVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIP 393
V N+D+P +DY+HR+GRT RAGR+G +++ V + ++IE +++P
Sbjct: 335 VVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEHLIGKKLP 388
Score = 146 (56.5 bits), Expect = 5.4e-61, Sum P(2) = 5.4e-61
Identities = 27/69 (39%), Positives = 46/69 (66%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+FK +G+ +++ +A ++G+ PT +Q +AIP A+ GRD+I ++TGSGKT AF LP L
Sbjct: 26 SFKDLGVTDVLCEACDQLGWKVPTKIQVEAIPVALQGRDIIGLAETGSGKTGAFALPILQ 85
Query: 62 KFASSKNKI 70
+ ++
Sbjct: 86 ALLDAPQRL 94
>FB|FBgn0263231 [details] [associations]
symbol:bel "belle" species:7227 "Drosophila melanogaster"
[GO:0007286 "spermatid development" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=IMP] [GO:0002168 "instar larval
development" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0016442 "RNA-induced silencing complex" evidence=IDA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0005811 "lipid
particle" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0043025 "neuronal cell body" evidence=IDA] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005875 GO:GO:0016246 GO:GO:0007286
GO:GO:0005811 GO:GO:0043025 GO:GO:0048477 GO:GO:0003723
GO:GO:0000070 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0002168 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 KO:K11594 HSSP:P09052 EMBL:AY089613
RefSeq:NP_536783.1 UniGene:Dm.7823 ProteinModelPortal:Q9VHP0
SMR:Q9VHP0 IntAct:Q9VHP0 STRING:Q9VHP0 PaxDb:Q9VHP0 PRIDE:Q9VHP0
EnsemblMetazoa:FBtr0081888 GeneID:45826 KEGG:dme:Dmel_CG9748
UCSC:CG9748-RA CTD:100035747 FlyBase:FBgn0263231 InParanoid:Q9VHP0
OMA:TILWVYE OrthoDB:EOG4DNCKG PhylomeDB:Q9VHP0 GenomeRNAi:45826
NextBio:838377 Bgee:Q9VHP0 Uniprot:Q9VHP0
Length = 798
Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
Identities = 158/406 (38%), Positives = 223/406 (54%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F + L E++ + Y KPT VQ+ AIP I+GRDL+ +QTGSGKTAAF++P L+
Sbjct: 296 SFDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILN 355
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ + +P + + K Y P LVL PTRELA Q+ +++
Sbjct: 356 QMYELGH-VPPPQSTRQYSRRKQY------------PLGLVLAPTRELATQIFEEAKKFA 402
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
Y +++ + GG QM+ L R +++ATPGRL D + GK+ +++ LVLDEA
Sbjct: 403 -YRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEA 461
Query: 182 DRMLDMGFINDIEKIVDAT--PVT--RQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
DRMLDMGF I +IV+ P T RQT++FSAT + +A + + + L V +
Sbjct: 462 DRMLDMGFEPQIRRIVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVG 521
Query: 238 KKQKNITQSILFVDDILHKNRLLDYL--LRD----KRVGQAVVFTATKRDADIIADRLNI 291
+NITQ+IL+V + ++ LLD L +RD + ++F TK+ AD + + L
Sbjct: 522 STSENITQTILWVYEPDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQ 581
Query: 292 SGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPE 351
+HGD Q R L R G ILVAT VAARG+D+P + HV N+DLP E
Sbjct: 582 CNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVE 641
Query: 352 DYVHRIGRTGRAGRNGFAVSLVNHAERMNIKK--IERF--TKQQIP 393
+YVHRIGRTGR G G A S N R NI +E TKQ+IP
Sbjct: 642 EYVHRIGRTGRMGNLGVATSFFNEKNR-NICSDLLELLIETKQEIP 686
>FB|FBgn0032919 [details] [associations]
symbol:CG9253 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
EMBL:AY121677 ProteinModelPortal:Q8MRB7 SMR:Q8MRB7 STRING:Q8MRB7
PaxDb:Q8MRB7 PRIDE:Q8MRB7 FlyBase:FBgn0032919 InParanoid:Q8MRB7
OrthoDB:EOG4V41Q7 ArrayExpress:Q8MRB7 Bgee:Q8MRB7 Uniprot:Q8MRB7
Length = 507
Score = 499 (180.7 bits), Expect = 6.9e-61, Sum P(2) = 6.9e-61
Identities = 110/295 (37%), Positives = 176/295 (59%)
Query: 101 LVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160
LVLTPTRELA Q+ E G + IK ++GGM + Q L++ P I++ATPGRL+
Sbjct: 133 LVLTPTRELAFQIGEQFEALGSGIG-IKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLV 191
Query: 161 DHMNSGK-INFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGN 219
DH+ + K N ++ LV+DEADR+L+M F +++KI+ P R+T LFSAT+ V
Sbjct: 192 DHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLFSATMTKKVKK 251
Query: 220 MAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATK 279
+ KDP+ ++V++ + + + QS LF+ + +K+ L ++L + ++F +T
Sbjct: 252 LQRASLKDPVKVEVSNKYQTVEQLQQSYLFIP-VKYKDVYLVHILNELAGNSFMIFCSTC 310
Query: 280 RDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAIT 339
+ A L G A PLHG + QN R L + IL++TDVA+RG+D+P +
Sbjct: 311 NNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVD 370
Query: 340 HVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
V N+D+P +DY+HR+GRT RAGR+G A++LV+ + ++IE +Q+ +
Sbjct: 371 VVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEHLLGKQLTL 425
Score = 142 (55.0 bits), Expect = 6.9e-61, Sum P(2) = 6.9e-61
Identities = 26/61 (42%), Positives = 43/61 (70%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ +K +GL+E + +A ++ + P+ +Q +AIP A+ G+D+I ++TGSGKT AF LP L
Sbjct: 61 LTWKDLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPIL 120
Query: 61 H 61
H
Sbjct: 121 H 121
>UNIPROTKB|F1NQ09 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AADN02002507 EMBL:AADN02002508
IPI:IPI00819782 ProteinModelPortal:F1NQ09
Ensembl:ENSGALT00000037063 Uniprot:F1NQ09
Length = 451
Score = 522 (188.8 bits), Expect = 8.8e-61, Sum P(2) = 8.8e-61
Identities = 128/316 (40%), Positives = 183/316 (57%)
Query: 94 KPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILL 153
K P MLVL PTRELALQV A +Y Y K K+I I GG Q+ ++++ +I++
Sbjct: 124 KRGGPGMLVLAPTRELALQVEAECLKY-TY-KGFKSICIYGGGDRKAQINVVTKGVDIVI 181
Query: 154 ATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKI-VDATPVTRQTMLFSAT 212
ATPGRL D + IN + LVLDEADRMLDMGF I KI +D P RQT++ SAT
Sbjct: 182 ATPGRLNDLQMNNFINLKSITYLVLDEADRMLDMGFEPQIMKILIDVRP-DRQTVMMSAT 240
Query: 213 LDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQA 272
V +A++ ++P+I+ V +++ + L D + + + +
Sbjct: 241 WPDGVRRLAKSYLRNPMIVYVGTLDLAVSGVVLKYLQFDKDIFTWKYMQVNAQSFCTDVV 300
Query: 273 VVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARG 332
VVF AD IA L + G LHGD Q R + L++ ++G+++ILVATD+A+RG
Sbjct: 301 VVFVQLHVVADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKKGKVRILVATDLASRG 360
Query: 333 IDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAE---RMNIKKIERFTK 389
+DV ITHVFN+D P+ E+YVHR+GRTGRAGR G AV+L+ + + I + K
Sbjct: 361 LDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLITKKDWKAASELIDILQRAK 420
Query: 390 QQIPIEVINGFEPKKR 405
Q +P E+I+ E K+
Sbjct: 421 QVVPDELISMAERYKQ 436
Score = 118 (46.6 bits), Expect = 8.8e-61, Sum P(2) = 8.8e-61
Identities = 26/64 (40%), Positives = 38/64 (59%)
Query: 12 VLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIP 71
++ + K G+ KPT +Q QA P + G DLI +QTG+GKT A+++P AS IP
Sbjct: 64 IMANIRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLASQP--IP 121
Query: 72 VMKK 75
K+
Sbjct: 122 KDKR 125
>ASPGD|ASPL0000062195 [details] [associations]
symbol:AN10125 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:BN001308 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:RIRKRDH EnsemblFungi:CADANIAT00001822 Uniprot:C8VQD7
Length = 814
Score = 494 (179.0 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
Identities = 113/309 (36%), Positives = 174/309 (56%)
Query: 89 ERLRFKPAQ-P--RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLL 145
ERL F+P + P R+ +L PTRELA+Q + Y I ++GG Q +L
Sbjct: 358 ERLLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTD-ITFCQLVGGFSLREQENVL 416
Query: 146 SRNPEILLATPGRLIDHM-NSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTR 204
+ P++++ATPGR IDHM NS L+ILVLDEADRML+ GF +++ +I+ P +R
Sbjct: 417 KKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSR 476
Query: 205 QTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRL--LDY 262
QTMLFSAT+ V + P+ L V++ + + Q + + RL L +
Sbjct: 477 QTMLFSATMTDSVDKLIRVGLNRPVRLMVDTKKNTAVTLVQEFVRLRPGREDKRLGYLLH 536
Query: 263 LLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKI 322
L ++ G+ +VF K++A + + G AA LHG + Q R +++E+ R G +
Sbjct: 537 LCKEVYTGRVIVFFRQKKEAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVESFRDGNVNF 596
Query: 323 LVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIK 382
L+ATD+A+RG+D+ + V NY+ P+ E YVHR+GRT RAGR+G A ++ +R +K
Sbjct: 597 LLATDLASRGLDIKGVETVINYEAPQSHEIYVHRVGRTARAGRSGRACTIAAEPDRKVVK 656
Query: 383 KIERFTKQQ 391
+ K Q
Sbjct: 657 AAVKAGKAQ 665
Score = 157 (60.3 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F+ L +L+ L V +T PT +Q++ IP A+ G+D++ S+ TGSGKTAAF++P L
Sbjct: 299 SFQEFNLSRPILRGLAAVNFTNPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILE 358
Query: 62 KFASSKNKIPVMK 74
+ K+P +
Sbjct: 359 RLLFRPRKVPTSR 371
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 502 (181.8 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
Identities = 121/296 (40%), Positives = 165/296 (55%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P LVL PTRELA QV + YG ++K+ I GG P Q++ L R EI +ATPG
Sbjct: 164 PICLVLAPTRELAQQVQQVADDYGK-CSRLKSTCIYGGAPKGPQIRDLERGVEICIATPG 222
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLID + +GK N LVLDEADRMLDMGF I KIVD RQT+++SAT V
Sbjct: 223 RLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV 282
Query: 218 GNMAENITKDPLILKVNSIE-KKQKNITQ--SILFVDDILHKN-RLLDYLLRDKRVGQAV 273
+AE+ +D + + V ++E NI Q + + HK +L++ ++ +K + +
Sbjct: 283 RQLAEDFLQDYVQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKE-NKTI 341
Query: 274 VFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGI 333
+F TKR D + R+ G+ A +HGD Q R+ L R G+ IL+ATDVA+RG+
Sbjct: 342 IFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGL 401
Query: 334 DVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTK 389
DV + V NYD P EDYVHRIGRT R+ G A + N+K+ K
Sbjct: 402 DVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPG---NLKQARELIK 454
Score = 137 (53.3 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
Identities = 26/58 (44%), Positives = 39/58 (67%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
F + V+ AL+ +T+PT +Q Q P A+SGRD++ +QTGSGKT A++LPA+
Sbjct: 92 FHQCSFPQYVMDALMDQNFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAI 149
>UNIPROTKB|Q9NXZ2 [details] [associations]
symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
Length = 648
Score = 523 (189.2 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 121/310 (39%), Positives = 188/310 (60%)
Query: 97 QPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATP 156
+P MLVLTPTRELALQV +Y Y K ++++ + GG Q++ L + +I++ATP
Sbjct: 316 RPGMLVLTPTRELALQVEGECCKYS-Y-KGLRSVCVYGGGNRDEQIEELKKGVDIIIATP 373
Query: 157 GRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIV-DATPVTRQTMLFSATLDG 215
GRL D S +N ++ LVLDEAD+MLDMGF I KI+ D P RQT++ SAT
Sbjct: 374 GRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRP-DRQTVMTSATWPH 432
Query: 216 IVGNMAENITKDPLILKVNSIEKKQ-KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVV 274
V +A++ K+P+I+ V +++ ++ Q+I+ + + + +L + +V
Sbjct: 433 SVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQSMSSTDKVIV 492
Query: 275 FTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGID 334
F + K AD ++ L + LHGD Q R + LEN + G+++IL+ATD+A+RG+D
Sbjct: 493 FVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRILIATDLASRGLD 552
Query: 335 VPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNH------AERMNIKKIERFT 388
V +THV+N+D P+ E+YVHRIGRTGRAGR G +++ + +E +NI +ER
Sbjct: 553 VHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASELINI--LER-A 609
Query: 389 KQQIPIEVIN 398
Q IP E+++
Sbjct: 610 NQSIPEELVS 619
Score = 115 (45.5 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 12 VLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPA-LH 61
V++ + K G+ KPT +Q QA P + G DLI +QTG+GKT +++P +H
Sbjct: 253 VMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIH 303
>ZFIN|ZDB-GENE-050522-359 [details] [associations]
symbol:zgc:112350 "zgc:112350" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-359 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG100512 KO:K14777
EMBL:BC095776 IPI:IPI00488135 RefSeq:NP_001018522.1
UniGene:Dr.84733 ProteinModelPortal:Q502B4 SMR:Q502B4 GeneID:553715
KEGG:dre:553715 NextBio:20880445 Uniprot:Q502B4
Length = 512
Score = 485 (175.8 bits), Expect = 1.8e-60, Sum P(2) = 1.8e-60
Identities = 107/294 (36%), Positives = 169/294 (57%)
Query: 101 LVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160
LVLTPTRELA Q+ + G + +K I+GG+ + Q +L++ P +++ATPGRLI
Sbjct: 151 LVLTPTRELAFQIAEQFDALGSSIG-VKTAVIVGGIDMMSQALVLAKKPHVVIATPGRLI 209
Query: 161 DHMNSGK-INFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGN 219
DHM + K N L+ LV+DEADR+L+M F ++++KI+ P R+T LFSAT+ V
Sbjct: 210 DHMENTKGFNLRALKYLVMDEADRILNMDFESEVDKILKVIPRDRRTFLFSATMTKKVQK 269
Query: 220 MAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATK 279
+ +DP+ V+S + Q +F+ +K+ L +L + +VF T
Sbjct: 270 LQRAALQDPVKCSVSSKYATVDKLQQFYIFIPS-KYKDCYLVSILNELAGNSFMVFCGTC 328
Query: 280 RDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAIT 339
+ +A L G A PLHG + QN R L + +L+ATDVA+RG+D+P +
Sbjct: 329 NNTQRVALLLRNLGITAIPLHGQMSQNKRLGALNKFKSKSRSVLLATDVASRGLDIPHVD 388
Query: 340 HVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIP 393
V N+D+P +DY+HR+GRT RAGR+G +++ V + ++IE +++P
Sbjct: 389 CVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEALIGKKLP 442
Score = 152 (58.6 bits), Expect = 1.8e-60, Sum P(2) = 1.8e-60
Identities = 28/69 (40%), Positives = 47/69 (68%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+FK +G+ E++ +A ++G+ KPT +Q +AIP A+ GRD+I ++TGSGKT AF +P L
Sbjct: 80 SFKELGVTEVLCEACDQLGWKKPTKIQIEAIPVALQGRDVIGLAETGSGKTGAFAVPVLQ 139
Query: 62 KFASSKNKI 70
+ ++
Sbjct: 140 SLLACAQRL 148
>TAIR|locus:2041549 [details] [associations]
symbol:AT2G42520 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005777 "peroxisome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005777 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC007087 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 ProtClustDB:CLSN2683925
EMBL:BT004111 IPI:IPI00545939 PIR:H84854 RefSeq:NP_181780.1
UniGene:At.43442 ProteinModelPortal:Q84W89 SMR:Q84W89 IntAct:Q84W89
PaxDb:Q84W89 PRIDE:Q84W89 EnsemblPlants:AT2G42520.1 GeneID:818852
KEGG:ath:AT2G42520 GeneFarm:1013 TAIR:At2g42520 InParanoid:Q84W89
OMA:ADSENTG PhylomeDB:Q84W89 Genevestigator:Q84W89
GermOnline:AT2G42520 Uniprot:Q84W89
Length = 633
Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
Identities = 155/383 (40%), Positives = 212/383 (55%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F I L E + + + Y KPT VQ AIP + GRDL+ +QTGSGKTAAF P +
Sbjct: 161 FAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISG 220
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLR-FKPAQPRMLVLTPTRELALQVTAATERYG 121
+MK H +R R + P ++L+PTRELA Q+ +++
Sbjct: 221 ---------IMKDQ----------HVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFS 261
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
Y +K + GG P +Q++ L R +IL+ATPGRL D + +++ ++ L LDEA
Sbjct: 262 -YQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEA 320
Query: 182 DRMLDMGFINDIEKIV---DATPV-TRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
DRMLDMGF I KIV D P RQT+LFSAT + +A + + + L V +
Sbjct: 321 DRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVG 380
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVG----QAV--VFTATKRDADIIADRLNI 291
I Q + FV D ++ L+D L + G QA+ VF TKR AD + + L I
Sbjct: 381 SSTDLIVQRVEFVLDSDKRSHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWLCI 440
Query: 292 SGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPE 351
+GF A +HGD Q R L+ + GR ILVATDVAARG+D+P + HV N+DLP +
Sbjct: 441 NGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDID 500
Query: 352 DYVHRIGRTGRAGRNGFAVSLVN 374
DYVHRIGRTGRAG++G A + N
Sbjct: 501 DYVHRIGRTGRAGKSGLATAFFN 523
>TIGR_CMR|CPS_0174 [details] [associations]
symbol:CPS_0174 "ATP-dependent RNA helicase RhlB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006402
"mRNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0006401 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K03732 OMA:HIDGIKY ProtClustDB:PRK04837
RefSeq:YP_266942.1 ProteinModelPortal:Q48AH1 STRING:Q48AH1
GeneID:3521970 KEGG:cps:CPS_0174 PATRIC:21463765
BioCyc:CPSY167879:GI48-277-MONOMER Uniprot:Q48AH1
Length = 428
Score = 536 (193.7 bits), Expect = 2.3e-60, Sum P(2) = 2.3e-60
Identities = 125/301 (41%), Positives = 170/301 (56%)
Query: 97 QPRMLVLTPTRELALQVTA-ATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLAT 155
QPR L++ PTRELA+Q+ ATE ++ + GG Y Q L +IL+ T
Sbjct: 81 QPRALIMAPTRELAIQIHRDATEM--AKSTGLRLGVVYGGEGYESQRLELEAGVDILIGT 138
Query: 156 PGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATP--VTRQTMLFSATL 213
GRLID+M G N +++++VLDEADRM D+GFI DI + D P R +MLFSATL
Sbjct: 139 CGRLIDYMKQGIYNLKNIEVIVLDEADRMFDLGFIKDIRYMFDKMPPATERLSMLFSATL 198
Query: 214 DGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAV 273
V +A + DP ++V +K I++ LF K LL L+ + +A+
Sbjct: 199 SFRVKELAFDHMNDPTSVEVEPEQKTNSRISEE-LFYPSNEDKMTLLQTLIEEDWPEKAI 257
Query: 274 VFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGI 333
VF TK + + D LN L GD+ Q R + LE G + ILVATDVAARG+
Sbjct: 258 VFANTKHVCEKVFDHLNADKIRVGLLTGDVPQKKRLKILEEFTDGTVDILVATDVAARGL 317
Query: 334 DVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIP 393
+P++THVFNYDLP +DYVHRIGRTGRAG G A+SL N+ +IE + +P
Sbjct: 318 HIPSVTHVFNYDLPDDCQDYVHRIGRTGRAGETGHAISLACEQYVFNLPEIETYIGHDLP 377
Query: 394 I 394
+
Sbjct: 378 V 378
Score = 100 (40.3 bits), Expect = 2.3e-60, Sum P(2) = 2.3e-60
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F + L V+ L +G+ T +Q +++P + G DL +QTG GKT AF+ H
Sbjct: 11 FADLNLAPQVVTGLEAMGFDYCTSIQAKSLPVLLQGTDLAGQAQTGEGKTIAFLAATFH 69
>UNIPROTKB|A4QYM6 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:CM001233 GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K13181 RefSeq:XP_003712922.1
ProteinModelPortal:A4QYM6 STRING:A4QYM6 GeneID:2683645
KEGG:mgr:MGG_07718 OrthoDB:EOG4B01XM Uniprot:A4QYM6
Length = 790
Score = 485 (175.8 bits), Expect = 2.5e-60, Sum P(2) = 2.5e-60
Identities = 114/309 (36%), Positives = 176/309 (56%)
Query: 89 ERLRFKPAQ-P--RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLL 145
ERL ++P + P R+++L PTRELA+Q A + + IK +GG+ Q L
Sbjct: 315 ERLLYRPKKVPTSRVVILAPTRELAIQCHAVATKLASHTD-IKFCLAVGGLSLKVQESEL 373
Query: 146 SRNPEILLATPGRLIDHM-NSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTR 204
P++++ATPGR IDHM NS ++ILVLDEADRML+ GF +++ +I+ P +R
Sbjct: 374 RLRPDVIIATPGRFIDHMRNSASFAVDTVEILVLDEADRMLEDGFADELNEILTTLPKSR 433
Query: 205 QTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRL--LDY 262
QTMLFSAT+ V N+ P+ L V+S +K +TQ + + + R+ L Y
Sbjct: 434 QTMLFSATMTSSVDNLIRVGLNKPVRLMVDSQKKTVVTLTQEFVRLRPGREEKRMGYLVY 493
Query: 263 LLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKI 322
L ++ + ++F K+ A + G A LHG + Q R +++E R G++
Sbjct: 494 LCKNLYTERVIIFFRQKKIAHHARIIFGLLGLSCAELHGSMSQIQRIQSVEAFRDGKVSF 553
Query: 323 LVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIK 382
L+ATD+A+RG+D+ + V NY+ P+ E YVHR+GRT RAGR+G A++L +R +K
Sbjct: 554 LLATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRSGTAITLAAEPDRKVVK 613
Query: 383 KIERFTKQQ 391
+ K Q
Sbjct: 614 AAVKAGKAQ 622
Score = 162 (62.1 bits), Expect = 2.5e-60, Sum P(2) = 2.5e-60
Identities = 29/73 (39%), Positives = 47/73 (64%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F+S+ L +L+ L VG+ KPT +Q + IP A+ G+D++ + TGSGKTAAF++P L
Sbjct: 256 SFQSMSLSRPILRGLTSVGFAKPTPIQSKTIPIALMGKDVVGGAVTGSGKTAAFVVPILE 315
Query: 62 KFASSKNKIPVMK 74
+ K+P +
Sbjct: 316 RLLYRPKKVPTSR 328
Score = 37 (18.1 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 152 LLATPGRLIDH--MNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDA 199
L A P R + + +GK + + ++D AD I+++E V+A
Sbjct: 603 LAAEPDRKVVKAAVKAGKAQGAKISSRIIDAADADSWQAKIDELEDEVEA 652
>UNIPROTKB|A7E307 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
Length = 650
Score = 504 (182.5 bits), Expect = 3.8e-60, Sum P(2) = 3.8e-60
Identities = 122/296 (41%), Positives = 164/296 (55%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P LVL PTRELA QV + YG ++K+ I GG P Q++ L R EI +ATPG
Sbjct: 166 PICLVLAPTRELAQQVQQVADDYGK-CSRLKSTCIYGGAPKGPQIRDLERGVEICIATPG 224
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLID + SGK N LVLDEADRMLDMGF I KIVD RQT+++SAT V
Sbjct: 225 RLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV 284
Query: 218 GNMAENITKDPLILKVNSIE-KKQKNITQ--SILFVDDILHKN-RLLDYLLRDKRVGQAV 273
+AE+ +D + V ++E NI Q + + HK +L++ ++ +K + +
Sbjct: 285 RQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKE-NKTI 343
Query: 274 VFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGI 333
+F TKR D + R+ G+ A +HGD Q R+ L R G+ IL+ATDVA+RG+
Sbjct: 344 IFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGL 403
Query: 334 DVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTK 389
DV + V NYD P EDYVHRIGRT R+ G A + N+K+ K
Sbjct: 404 DVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPG---NLKQARELIK 456
Score = 130 (50.8 bits), Expect = 3.8e-60, Sum P(2) = 3.8e-60
Identities = 25/58 (43%), Positives = 38/58 (65%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
F + V+ L+ +T+PT +Q Q P A+SGRD++ +QTGSGKT A++LPA+
Sbjct: 94 FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAI 151
>UNIPROTKB|E2RJ60 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
Length = 650
Score = 504 (182.5 bits), Expect = 3.8e-60, Sum P(2) = 3.8e-60
Identities = 122/296 (41%), Positives = 164/296 (55%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P LVL PTRELA QV + YG ++K+ I GG P Q++ L R EI +ATPG
Sbjct: 166 PICLVLAPTRELAQQVQQVADDYGK-CSRLKSTCIYGGAPKGPQIRDLERGVEICIATPG 224
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLID + SGK N LVLDEADRMLDMGF I KIVD RQT+++SAT V
Sbjct: 225 RLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV 284
Query: 218 GNMAENITKDPLILKVNSIE-KKQKNITQ--SILFVDDILHKN-RLLDYLLRDKRVGQAV 273
+AE+ +D + V ++E NI Q + + HK +L++ ++ +K + +
Sbjct: 285 RQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKE-NKTI 343
Query: 274 VFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGI 333
+F TKR D + R+ G+ A +HGD Q R+ L R G+ IL+ATDVA+RG+
Sbjct: 344 IFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGL 403
Query: 334 DVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTK 389
DV + V NYD P EDYVHRIGRT R+ G A + N+K+ K
Sbjct: 404 DVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPG---NLKQARELIK 456
Score = 130 (50.8 bits), Expect = 3.8e-60, Sum P(2) = 3.8e-60
Identities = 25/58 (43%), Positives = 38/58 (65%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
F + V+ L+ +T+PT +Q Q P A+SGRD++ +QTGSGKT A++LPA+
Sbjct: 94 FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAI 151
>MGI|MGI:1914290 [details] [associations]
symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0072358 "cardiovascular system
development" evidence=IMP] [GO:2001014 "regulation of skeletal
muscle cell differentiation" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
CleanEx:MM_DDX17 Genevestigator:Q501J6
GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
Length = 650
Score = 504 (182.5 bits), Expect = 3.8e-60, Sum P(2) = 3.8e-60
Identities = 122/296 (41%), Positives = 164/296 (55%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P LVL PTRELA QV + YG ++K+ I GG P Q++ L R EI +ATPG
Sbjct: 166 PICLVLAPTRELAQQVQQVADDYGK-CSRLKSTCIYGGAPKGPQIRDLERGVEICIATPG 224
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLID + SGK N LVLDEADRMLDMGF I KIVD RQT+++SAT V
Sbjct: 225 RLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV 284
Query: 218 GNMAENITKDPLILKVNSIE-KKQKNITQ--SILFVDDILHKN-RLLDYLLRDKRVGQAV 273
+AE+ +D + V ++E NI Q + + HK +L++ ++ +K + +
Sbjct: 285 RQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKE-NKTI 343
Query: 274 VFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGI 333
+F TKR D + R+ G+ A +HGD Q R+ L R G+ IL+ATDVA+RG+
Sbjct: 344 IFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGL 403
Query: 334 DVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTK 389
DV + V NYD P EDYVHRIGRT R+ G A + N+K+ K
Sbjct: 404 DVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPG---NLKQARELIK 456
Score = 130 (50.8 bits), Expect = 3.8e-60, Sum P(2) = 3.8e-60
Identities = 25/58 (43%), Positives = 38/58 (65%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
F + V+ L+ +T+PT +Q Q P A+SGRD++ +QTGSGKT A++LPA+
Sbjct: 94 FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAI 151
>UNIPROTKB|Q8EHT1 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
Identities = 157/404 (38%), Positives = 229/404 (56%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F +GL+ + KAL PT VQ+ AIPA ++GRDL+ SQTGSGKT AF LP L
Sbjct: 17 LTFAELGLNAALRKAL-PTRLKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLL 75
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
++ + + + T + + A+P LVL PTRELALQV+ A
Sbjct: 76 Q----------ILWQQI-----AVQTTAKSV--PAAKPLALVLVPTRELALQVSEALHAL 118
Query: 121 GLYMKKIKAISI---LGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
+ ++I GG+ +Q+ LS P++++ATPGRL+D I+ ++ LV
Sbjct: 119 ASQLSTSAPLNIQLLCGGVALEQQLADLSAKPQLVVATPGRLLDLCTQSHISLDAIKHLV 178
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENI-TKDPLILKVNSI 236
LDEADR+L+MGF D++K++ P +QT+LFSATL + ++A + T DPL ++ ++
Sbjct: 179 LDEADRLLEMGFWPDMQKLMAMMPKRKQTLLFSATLPEALDSLAGKLLTNDPLKVEASTR 238
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
I + + V+ K + L LL+ + Q +VF + + DAD IA RL +G A
Sbjct: 239 NAVVGEIEEQLYLVNKG-SKAQALIALLKQYQWPQVLVFISARDDADAIAKRLVKAGINA 297
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A LHG+ Q R++TL + + RI++LVATD+ ARGI V A+ V N DLP YVHR
Sbjct: 298 AALHGEKDQTVRSQTLADFKADRIQVLVATDLMARGIHVDALPVVINLDLPTSAPVYVHR 357
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGF 400
IGRT RAG G A+SLV H E N+ I T + +P+ + F
Sbjct: 358 IGRTARAGAKGLAISLVCHGEMPNLTAIRNLTARALPLVFLADF 401
>TIGR_CMR|SO_1136 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
Identities = 157/404 (38%), Positives = 229/404 (56%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F +GL+ + KAL PT VQ+ AIPA ++GRDL+ SQTGSGKT AF LP L
Sbjct: 17 LTFAELGLNAALRKAL-PTRLKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLL 75
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
++ + + + T + + A+P LVL PTRELALQV+ A
Sbjct: 76 Q----------ILWQQI-----AVQTTAKSV--PAAKPLALVLVPTRELALQVSEALHAL 118
Query: 121 GLYMKKIKAISI---LGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
+ ++I GG+ +Q+ LS P++++ATPGRL+D I+ ++ LV
Sbjct: 119 ASQLSTSAPLNIQLLCGGVALEQQLADLSAKPQLVVATPGRLLDLCTQSHISLDAIKHLV 178
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENI-TKDPLILKVNSI 236
LDEADR+L+MGF D++K++ P +QT+LFSATL + ++A + T DPL ++ ++
Sbjct: 179 LDEADRLLEMGFWPDMQKLMAMMPKRKQTLLFSATLPEALDSLAGKLLTNDPLKVEASTR 238
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
I + + V+ K + L LL+ + Q +VF + + DAD IA RL +G A
Sbjct: 239 NAVVGEIEEQLYLVNKG-SKAQALIALLKQYQWPQVLVFISARDDADAIAKRLVKAGINA 297
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A LHG+ Q R++TL + + RI++LVATD+ ARGI V A+ V N DLP YVHR
Sbjct: 298 AALHGEKDQTVRSQTLADFKADRIQVLVATDLMARGIHVDALPVVINLDLPTSAPVYVHR 357
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGF 400
IGRT RAG G A+SLV H E N+ I T + +P+ + F
Sbjct: 358 IGRTARAGAKGLAISLVCHGEMPNLTAIRNLTARALPLVFLADF 401
>UNIPROTKB|E1BII7 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:DAAA02025231 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:DAAA02025227 EMBL:DAAA02025228
EMBL:DAAA02025229 EMBL:DAAA02025230 IPI:IPI00712097
Ensembl:ENSBTAT00000029077 OMA:ANQNIPE Uniprot:E1BII7
Length = 647
Score = 517 (187.1 bits), Expect = 4.8e-60, Sum P(2) = 4.8e-60
Identities = 121/315 (38%), Positives = 190/315 (60%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P MLVLTPTRELALQV A Y Y + +K++ I GG Q++ LS+ +I++ATPG
Sbjct: 316 PGMLVLTPTRELALQVDAECSEYS-Y-RGLKSVCIYGGGDRDGQIKDLSKGADIIIATPG 373
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIV-DATPVTRQTMLFSATLDGI 216
RL D + + + LVLDEAD+MLDMGF I KI+ D P RQT++ SAT
Sbjct: 374 RLHDLQMNNFVYLKSITYLVLDEADKMLDMGFEPQIMKILLDVRP-DRQTVMTSATWPYA 432
Query: 217 VGNMAENITKDPLILKVNSIEKKQ-KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVF 275
V +A++ K+P+I+ V +++ +TQ+I+ + ++ + ++ + ++F
Sbjct: 433 VRRLAQSYLKEPMIVYVGTLDLVAVSTVTQNIIVTTEDEKRSHIQAFIDSMSPKDKVIIF 492
Query: 276 TATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDV 335
+ K AD ++ L I LHG+ Q+ R R L++ + G+++IL+ATD+A+RG+DV
Sbjct: 493 VSRKAVADHLSSDLGIRRISVESLHGNREQSDRERALKSFKTGKVRILIATDLASRGLDV 552
Query: 336 PAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNH------AERMNIKKIERFTK 389
+THV+NYD P+ E+YVHR+GRTGRAGR G +++L+ E +NI +ER
Sbjct: 553 HDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRNDWKIAGELINI--LER-AN 609
Query: 390 QQIPIEVINGFEPKK 404
Q +P ++++ E K
Sbjct: 610 QSVPEDLVSMAERYK 624
Score = 116 (45.9 bits), Expect = 4.8e-60, Sum P(2) = 4.8e-60
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 12 VLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPA-LH 61
V++ + K G+ KPT +Q QA P + G DLI +QTG+GKT ++++P +H
Sbjct: 252 VMRNIEKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIH 302
>TAIR|locus:2076351 [details] [associations]
symbol:AT3G58510 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005777 "peroxisome"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730
GO:GO:0005777 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL137082 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K11594
EMBL:AY088091 EMBL:AY062446 EMBL:AY114637 EMBL:AJ010463
IPI:IPI00521485 PIR:T45671 PIR:T51742 RefSeq:NP_001030884.1
RefSeq:NP_567067.1 RefSeq:NP_974455.1 UniGene:At.22801
UniGene:At.70259 ProteinModelPortal:Q8LA13 SMR:Q8LA13 IntAct:Q8LA13
STRING:Q8LA13 PaxDb:Q8LA13 PRIDE:Q8LA13 EnsemblPlants:AT3G58510.1
EnsemblPlants:AT3G58510.2 EnsemblPlants:AT3G58510.3 GeneID:825020
KEGG:ath:AT3G58510 GeneFarm:927 TAIR:At3g58510 InParanoid:Q8LA13
OMA:FCAPDEA PhylomeDB:Q8LA13 ProtClustDB:CLSN2683925
Genevestigator:Q8LA13 GermOnline:AT3G58510 Uniprot:Q8LA13
Length = 612
Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
Identities = 155/403 (38%), Positives = 225/403 (55%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F I L + + + + Y +PT VQ AIP ++ RDL+ +QTGSGKTAAF P +
Sbjct: 153 FADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISG 212
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPA-QPRMLVLTPTRELALQVTAATERYG 121
+MK H ER R A P ++L+PTRELA Q+ +++
Sbjct: 213 ---------IMKDQ----------HVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFS 253
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
Y +K + GG P +Q++ L R +IL+ATPGRL D + +++ ++ L LDEA
Sbjct: 254 -YQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEA 312
Query: 182 DRMLDMGFINDIEKIV---DATPV-TRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
DRMLDMGF I KIV D P RQTMLFSAT + +A + + + L V +
Sbjct: 313 DRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVG 372
Query: 238 KKQKNITQSILFVDDILHKNRLLDYL--LRDKRVGQAV--VFTATKRDADIIADRLNISG 293
ITQ + FV + ++ L+D L R+ + Q++ VF TKR AD + + L ++
Sbjct: 373 SSTDLITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNE 432
Query: 294 FLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDY 353
F A +HGD Q R L + + GR ILVATDVAARG+D+P + HV N+DLP +DY
Sbjct: 433 FPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDY 492
Query: 354 VHRIGRTGRAGRNGFAVSLVN--HAE-RMNIKKIERFTKQQIP 393
VHRIGRTGRAG++G A + N +A+ ++ ++ + Q++P
Sbjct: 493 VHRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQEANQEVP 535
>POMBASE|SPCC63.11 [details] [associations]
symbol:prp28 "U5 snRNP-associated protein Prp28
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC63.11
GO:GO:0005524 GO:GO:0005737 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0000354 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE OrthoDB:EOG4KPXK0 PIR:T41512 RefSeq:NP_587984.1
ProteinModelPortal:Q9Y7T7 STRING:Q9Y7T7 EnsemblFungi:SPCC63.11.1
GeneID:2538728 KEGG:spo:SPCC63.11 NextBio:20799913 Uniprot:Q9Y7T7
Length = 662
Score = 335 (123.0 bits), Expect = 6.6e-60, Sum P(3) = 6.6e-60
Identities = 75/200 (37%), Positives = 116/200 (58%)
Query: 204 RQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYL 263
RQT++FSATL V N+A++ +P++L + +I + + Q + + D K R ++ +
Sbjct: 450 RQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAVDRVEQRVEMISDDSKKWRRVEEI 509
Query: 264 LRDKRVGQAVV-FTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKI 322
L R ++ F KR+ + IA +LN G+ A LHG Q R R +E LR I
Sbjct: 510 LESNRFSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADI 569
Query: 323 LVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAER---M 379
LVATD+A RGID+P ++ V NY++ K EDY HRIGRTGRAG++G A++ + +
Sbjct: 570 LVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFLGPEDTDVYY 629
Query: 380 NIKKI-ERFTKQQIPIEVIN 398
+++ + R K IP E+ N
Sbjct: 630 DLRVLLSRSAKAHIPDELRN 649
Score = 188 (71.2 bits), Expect = 6.6e-60, Sum P(3) = 6.6e-60
Identities = 40/104 (38%), Positives = 62/104 (59%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P +VL PTRELA Q+ ++ + + +S++GG + Q +S+ I++ATPG
Sbjct: 326 PYAVVLAPTRELAQQIQVEGNKFAEPLG-FRCVSVVGGHAFEEQSFQMSQGAHIVVATPG 384
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATP 201
RL+D + S +V+DEADRMLDMGF +D+ KI+ + P
Sbjct: 385 RLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLP 428
Score = 143 (55.4 bits), Expect = 6.6e-60, Sum P(3) = 6.6e-60
Identities = 32/77 (41%), Positives = 49/77 (63%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
N++ GL +LK L KV Y +P+ +Q AIP + +DLI ++TGSGKTAAF++P +
Sbjct: 250 NWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLI- 308
Query: 62 KFASSKNKIPVMKKNLN 78
A SK P+ + N++
Sbjct: 309 -IAISKLP-PLTESNMH 323
>UNIPROTKB|Q92841 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0033148 "positive
regulation of intracellular estrogen receptor signaling pathway"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
GO:GO:2001014 Uniprot:Q92841
Length = 729
Score = 504 (182.5 bits), Expect = 6.8e-60, Sum P(2) = 6.8e-60
Identities = 122/296 (41%), Positives = 164/296 (55%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P LVL PTRELA QV + YG ++K+ I GG P Q++ L R EI +ATPG
Sbjct: 245 PICLVLAPTRELAQQVQQVADDYGK-CSRLKSTCIYGGAPKGPQIRDLERGVEICIATPG 303
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLID + SGK N LVLDEADRMLDMGF I KIVD RQT+++SAT V
Sbjct: 304 RLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV 363
Query: 218 GNMAENITKDPLILKVNSIE-KKQKNITQ--SILFVDDILHKN-RLLDYLLRDKRVGQAV 273
+AE+ +D + V ++E NI Q + + HK +L++ ++ +K + +
Sbjct: 364 RQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKE-NKTI 422
Query: 274 VFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGI 333
+F TKR D + R+ G+ A +HGD Q R+ L R G+ IL+ATDVA+RG+
Sbjct: 423 IFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGL 482
Query: 334 DVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTK 389
DV + V NYD P EDYVHRIGRT R+ G A + N+K+ K
Sbjct: 483 DVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPG---NLKQARELIK 535
Score = 130 (50.8 bits), Expect = 6.8e-60, Sum P(2) = 6.8e-60
Identities = 25/58 (43%), Positives = 38/58 (65%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
F + V+ L+ +T+PT +Q Q P A+SGRD++ +QTGSGKT A++LPA+
Sbjct: 173 FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAI 230
>UNIPROTKB|H3BLZ8 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0072358
"cardiovascular system development" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
Length = 731
Score = 504 (182.5 bits), Expect = 7.4e-60, Sum P(2) = 7.4e-60
Identities = 122/296 (41%), Positives = 164/296 (55%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P LVL PTRELA QV + YG ++K+ I GG P Q++ L R EI +ATPG
Sbjct: 245 PICLVLAPTRELAQQVQQVADDYGK-CSRLKSTCIYGGAPKGPQIRDLERGVEICIATPG 303
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLID + SGK N LVLDEADRMLDMGF I KIVD RQT+++SAT V
Sbjct: 304 RLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV 363
Query: 218 GNMAENITKDPLILKVNSIE-KKQKNITQ--SILFVDDILHKN-RLLDYLLRDKRVGQAV 273
+AE+ +D + V ++E NI Q + + HK +L++ ++ +K + +
Sbjct: 364 RQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKE-NKTI 422
Query: 274 VFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGI 333
+F TKR D + R+ G+ A +HGD Q R+ L R G+ IL+ATDVA+RG+
Sbjct: 423 IFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGL 482
Query: 334 DVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTK 389
DV + V NYD P EDYVHRIGRT R+ G A + N+K+ K
Sbjct: 483 DVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPG---NLKQARELIK 535
Score = 130 (50.8 bits), Expect = 7.4e-60, Sum P(2) = 7.4e-60
Identities = 25/58 (43%), Positives = 38/58 (65%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
F + V+ L+ +T+PT +Q Q P A+SGRD++ +QTGSGKT A++LPA+
Sbjct: 173 FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAI 230
>FB|FBgn0037549 [details] [associations]
symbol:CG7878 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006200 GO:GO:0003723 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
HSSP:P10081 OMA:VLDITHV EMBL:AY051831 RefSeq:NP_649767.1
UniGene:Dm.1098 SMR:Q7K4L8 IntAct:Q7K4L8 EnsemblMetazoa:FBtr0113205
GeneID:40959 KEGG:dme:Dmel_CG7878 UCSC:CG7878-RA
FlyBase:FBgn0037549 InParanoid:Q7K4L8 OrthoDB:EOG47D7XG
GenomeRNAi:40959 NextBio:20818674 Uniprot:Q7K4L8
Length = 703
Score = 505 (182.8 bits), Expect = 7.8e-60, Sum P(2) = 7.8e-60
Identities = 117/305 (38%), Positives = 182/305 (59%)
Query: 100 MLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRL 159
+LVL PTRELALQ+ ++Y + +KA+ + GG Q+ L R EI++ TPGRL
Sbjct: 360 VLVLAPTRELALQIEMEVKKYSF--RGMKAVCVYGGGNRNMQISDLERGAEIIICTPGRL 417
Query: 160 IDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIV-DATPVTRQTMLFSATLDGIVG 218
D + + I+ S + LVLDEADRMLDMGF I K++ D P RQT++ SAT V
Sbjct: 418 NDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRP-DRQTIMTSATWPPGVR 476
Query: 219 NMAENITKDPLILKVNSIE-KKQKNITQSILFVDDILHK-NRLLDYLLRDKRVGQAVVFT 276
+A++ K+P+ + V S++ ++ Q I ++D + K N + ++ + ++F
Sbjct: 477 RLAQSYMKNPIQVCVGSLDLAATHSVKQIIKLMEDDMDKFNTITSFVKNMSSTDKIIIFC 536
Query: 277 ATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVP 336
K AD ++ L + GF+ +HG+ Q R + + +++ G ++ILVATDVA+RG+D+
Sbjct: 537 GRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRILVATDVASRGLDIE 596
Query: 337 AITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKK-IE--RFTKQQIP 393
ITHV NYD P E+YVHR+GRTGRAGR G ++S + K+ IE + +Q++P
Sbjct: 597 DITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSISFFTREDWAMAKELIEILQEAEQEVP 656
Query: 394 IEVIN 398
E+ N
Sbjct: 657 DELHN 661
Score = 126 (49.4 bits), Expect = 7.8e-60, Sum P(2) = 7.8e-60
Identities = 22/49 (44%), Positives = 36/49 (73%)
Query: 12 VLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+L+ + K+G++KP+ +Q QA P + G D+I +QTG+GKT AF+LP +
Sbjct: 294 MLEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGM 342
>UNIPROTKB|F1PID8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
Length = 736
Score = 504 (182.5 bits), Expect = 9.1e-60, Sum P(2) = 9.1e-60
Identities = 122/296 (41%), Positives = 164/296 (55%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P LVL PTRELA QV + YG ++K+ I GG P Q++ L R EI +ATPG
Sbjct: 247 PICLVLAPTRELAQQVQQVADDYGK-CSRLKSTCIYGGAPKGPQIRDLERGVEICIATPG 305
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLID + SGK N LVLDEADRMLDMGF I KIVD RQT+++SAT V
Sbjct: 306 RLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV 365
Query: 218 GNMAENITKDPLILKVNSIE-KKQKNITQ--SILFVDDILHKN-RLLDYLLRDKRVGQAV 273
+AE+ +D + V ++E NI Q + + HK +L++ ++ +K + +
Sbjct: 366 RQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKE-NKTI 424
Query: 274 VFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGI 333
+F TKR D + R+ G+ A +HGD Q R+ L R G+ IL+ATDVA+RG+
Sbjct: 425 IFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGL 484
Query: 334 DVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTK 389
DV + V NYD P EDYVHRIGRT R+ G A + N+K+ K
Sbjct: 485 DVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPG---NLKQARELIK 537
Score = 130 (50.8 bits), Expect = 9.1e-60, Sum P(2) = 9.1e-60
Identities = 25/58 (43%), Positives = 38/58 (65%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
F + V+ L+ +T+PT +Q Q P A+SGRD++ +QTGSGKT A++LPA+
Sbjct: 175 FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAI 232
>UNIPROTKB|F1SKQ0 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
Length = 736
Score = 504 (182.5 bits), Expect = 9.1e-60, Sum P(2) = 9.1e-60
Identities = 122/296 (41%), Positives = 164/296 (55%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P LVL PTRELA QV + YG ++K+ I GG P Q++ L R EI +ATPG
Sbjct: 247 PICLVLAPTRELAQQVQQVADDYGK-CSRLKSTCIYGGAPKGPQIRDLERGVEICIATPG 305
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLID + SGK N LVLDEADRMLDMGF I KIVD RQT+++SAT V
Sbjct: 306 RLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV 365
Query: 218 GNMAENITKDPLILKVNSIE-KKQKNITQ--SILFVDDILHKN-RLLDYLLRDKRVGQAV 273
+AE+ +D + V ++E NI Q + + HK +L++ ++ +K + +
Sbjct: 366 RQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKE-NKTI 424
Query: 274 VFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGI 333
+F TKR D + R+ G+ A +HGD Q R+ L R G+ IL+ATDVA+RG+
Sbjct: 425 IFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGL 484
Query: 334 DVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTK 389
DV + V NYD P EDYVHRIGRT R+ G A + N+K+ K
Sbjct: 485 DVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPG---NLKQARELIK 537
Score = 130 (50.8 bits), Expect = 9.1e-60, Sum P(2) = 9.1e-60
Identities = 25/58 (43%), Positives = 38/58 (65%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
F + V+ L+ +T+PT +Q Q P A+SGRD++ +QTGSGKT A++LPA+
Sbjct: 175 FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAI 232
>ZFIN|ZDB-GENE-030131-925 [details] [associations]
symbol:ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
5" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-925 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:BX085195 IPI:IPI00488168 Ensembl:ENSDART00000055492
ArrayExpress:F1Q5L6 Bgee:F1Q5L6 Uniprot:F1Q5L6
Length = 617
Score = 502 (181.8 bits), Expect = 9.9e-60, Sum P(2) = 9.9e-60
Identities = 122/313 (38%), Positives = 175/313 (55%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P LVL PTRELA QV YG +IK+ I GG P Q++ L R EI +ATPG
Sbjct: 170 PICLVLAPTRELAQQVQQVAAEYGK-ASRIKSTCIYGGAPKGPQIRDLERGVEICIATPG 228
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLID + +GK N LVLDEADRMLDMGF I KIVD RQT+++SAT V
Sbjct: 229 RLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV 288
Query: 218 GNMAENITKDPLILKVNSIE-KKQKNITQSILFVDDILHKN---RLLDYLLRDKRVGQAV 273
+AE+ K+ + + V +++ NI Q + +D ++ RLL+ ++ +K + +
Sbjct: 289 RQLAEDFLKEYIQINVGALQLSANHNILQIVDVCNDGEKEDKLIRLLEEIMSEKE-NKTI 347
Query: 274 VFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGI 333
+F TKR D + R+ G+ A +HGD +Q R+ L + G+ IL+ATDVA+RG+
Sbjct: 348 IFVETKRRCDDLTRRMRRDGWPAMGIHGDKNQQERDWVLNEFKYGKAPILIATDVASRGL 407
Query: 334 DVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLV---NHAERMNIKKIERFTKQ 390
DV + V N+D P EDY+HRIGRT R+ + G A + N + ++ + R Q
Sbjct: 408 DVEDVKFVINFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAHDLVSVLREANQ 467
Query: 391 QIPIEVINGFEPK 403
I ++I E +
Sbjct: 468 AINPKLIQMAEDR 480
Score = 128 (50.1 bits), Expect = 9.9e-60, Sum P(2) = 9.9e-60
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + V+ + K +T PT +Q Q P A+SG+D++ +QTGSGKT +++LPA+
Sbjct: 96 VKFHEANFPKYVMDVITKQNWTDPTPIQAQGWPVALSGKDMVGIAQTGSGKTLSYLLPAI 155
>UNIPROTKB|F1NQV5 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AADN02019007 IPI:IPI00579774
Ensembl:ENSGALT00000039062 ArrayExpress:F1NQV5 Uniprot:F1NQV5
Length = 758
Score = 492 (178.3 bits), Expect = 1.0e-59, Sum P(2) = 1.0e-59
Identities = 120/315 (38%), Positives = 176/315 (55%)
Query: 89 ERLRFKPAQ-P--RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLL 145
ERL +KP Q P R+LVL PTREL +QV + T++ + +++ GG+ Q L
Sbjct: 240 ERLIYKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSSVTTCLAV-GGLDVKTQEAAL 298
Query: 146 SRNPEILLATPGRLIDHM-NSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTR 204
P+IL+ATPGRLIDH+ N + S +++L+LDEADRMLD F +++I+ R
Sbjct: 299 RSGPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLCSRHR 358
Query: 205 QTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNR--LLDY 262
QTMLFSAT+ V ++A K+P + VNS + Q + + +R ++
Sbjct: 359 QTMLFSATMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSA 418
Query: 263 LLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKI 322
LL ++FT TK+ A + L + G LHG+L Q R L + +I I
Sbjct: 419 LLTRTFPDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLEALRRFKDEQIDI 478
Query: 323 LVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIK 382
LVATDVAARG+D+ + V N+ +P + YVHR+GRT RAGR G +VSLV ER +K
Sbjct: 479 LVATDVAARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEERKMLK 538
Query: 383 KIERFTKQQIPIEVI 397
+I + K + ++
Sbjct: 539 EIVKAAKTPVKARIL 553
Score = 146 (56.5 bits), Expect = 1.0e-59, Sum P(2) = 1.0e-59
Identities = 25/74 (33%), Positives = 46/74 (62%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
++F+ + L +LKA+ +G+ +PT +Q+ IP + G+D+ + TG+GKTAAF+LP L
Sbjct: 180 LSFQDMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFILPVL 239
Query: 61 HKFASSKNKIPVMK 74
+ + P+ +
Sbjct: 240 ERLIYKPRQAPITR 253
>UNIPROTKB|A1A4H6 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:BC126497 IPI:IPI00734460 RefSeq:NP_001073740.1 UniGene:Bt.2644
ProteinModelPortal:A1A4H6 PRIDE:A1A4H6 Ensembl:ENSBTAT00000057089
GeneID:514567 KEGG:bta:514567 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH NextBio:20871404
Uniprot:A1A4H6
Length = 765
Score = 493 (178.6 bits), Expect = 1.2e-59, Sum P(2) = 1.2e-59
Identities = 120/315 (38%), Positives = 177/315 (56%)
Query: 89 ERLRFKPAQ-P--RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLL 145
ERL +KP Q P R+LVL PTREL +QV + T++ + +++ GG+ Q L
Sbjct: 247 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAV-GGLDVKSQEAAL 305
Query: 146 SRNPEILLATPGRLIDHM-NSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTR 204
P+IL+ATPGRLIDH+ N + S +++L+LDEADRMLD F +++I+ R
Sbjct: 306 RAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHR 365
Query: 205 QTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNR--LLDY 262
QTMLFSAT+ V ++A K+P+ + VNS + Q + + +R ++
Sbjct: 366 QTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAA 425
Query: 263 LLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKI 322
LL ++FT TK+ A + L + G LHG+L Q R L + +I I
Sbjct: 426 LLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDI 485
Query: 323 LVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIK 382
LVATDVAARG+D+ + V N+ +P + YVHR+GRT RAGR G +VSLV ER +K
Sbjct: 486 LVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLK 545
Query: 383 KIERFTKQQIPIEVI 397
+I + K + ++
Sbjct: 546 EIVKAAKAPVKARIL 560
Score = 145 (56.1 bits), Expect = 1.2e-59, Sum P(2) = 1.2e-59
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
++F+ + L +LKA+ +G+ +PT +Q+ IP + G+D+ + TG+GKTAAF LP L
Sbjct: 187 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 246
Query: 61 HKFASSKNKIPVMK 74
+ + PV +
Sbjct: 247 ERLIYKPRQAPVTR 260
>FB|FBgn0036104 [details] [associations]
symbol:CG6418 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE014296 GO:GO:0006200
GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 KO:K12835 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AY061400 RefSeq:NP_648413.1
UniGene:Dm.922 SMR:Q9VTC1 IntAct:Q9VTC1 MINT:MINT-311970
STRING:Q9VTC1 EnsemblMetazoa:FBtr0076274 GeneID:39218
KEGG:dme:Dmel_CG6418 UCSC:CG6418-RB FlyBase:FBgn0036104
InParanoid:Q9VTC1 OrthoDB:EOG4KKWJ0 ChiTaRS:CG6418 GenomeRNAi:39218
NextBio:812543 Uniprot:Q9VTC1
Length = 791
Score = 480 (174.0 bits), Expect = 1.5e-59, Sum P(2) = 1.5e-59
Identities = 107/292 (36%), Positives = 164/292 (56%)
Query: 89 ERLRFKPAQ-PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSR 147
++ + KP P L+L PTREL+LQ+ +++G + + + GG Q + L +
Sbjct: 333 DQKQLKPGDGPIGLILAPTRELSLQIYNEAKKFGK-VYNLNVVCCYGGGSKWEQSKALEQ 391
Query: 148 NPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTM 207
EI++ATPGR+ID + N + LVLDEADRM MGF + I + RQ +
Sbjct: 392 GAEIIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQCL 451
Query: 208 LFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHK-NRLLDYLLRD 266
+FSAT + +A ++ DP+ + + + ++ITQS+ + L K N LL +L++
Sbjct: 452 MFSATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQSVYVFPNPLQKWNWLLCHLVKF 511
Query: 267 KRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVAT 326
G ++F K DA+ +++ L I + LHGD+ Q RN+ + +R ILVAT
Sbjct: 512 LSEGSVLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDILVAT 571
Query: 327 DVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAER 378
DVAARG+D+P I +V NYD + E + HRIGRTGRAG G A +LV ++
Sbjct: 572 DVAARGLDIPHIRNVVNYDTARDIETHTHRIGRTGRAGEKGNAYTLVTDKDK 623
Score = 160 (61.4 bits), Expect = 1.5e-59, Sum P(2) = 1.5e-59
Identities = 33/70 (47%), Positives = 45/70 (64%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F G E ++KA+ K YT+PT +Q QA+P A+SGRD+I ++TGSGKTAAF+ P L
Sbjct: 270 SFGHFGFDEQLIKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLM 329
Query: 62 KFASSKNKIP 71
K P
Sbjct: 330 HVMDQKQLKP 339
>POMBASE|SPAC30D11.03 [details] [associations]
symbol:ddx27 "ATP-dependent RNA helicase Ddx27/Drs1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC30D11.03 GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000265456 KO:K13181 OrthoDB:EOG4B01XM PIR:S62561
RefSeq:NP_593214.1 ProteinModelPortal:Q09903 STRING:Q09903
EnsemblFungi:SPAC30D11.03.1 GeneID:2543155 KEGG:spo:SPAC30D11.03
NextBio:20804181 Uniprot:Q09903
Length = 754
Score = 482 (174.7 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
Identities = 114/309 (36%), Positives = 179/309 (57%)
Query: 89 ERLRFKPAQ-P--RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLL 145
ERL ++P + P R+L+L PTRELA+Q + + + + + I GG+ Q Q L
Sbjct: 319 ERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCI-GGLSLKLQEQEL 377
Query: 146 SRNPEILLATPGRLIDHM-NSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTR 204
+ P+I++ATPGR IDHM NS +++I+V+DEADRML+ GF +++ +I+ A P +R
Sbjct: 378 RKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSR 437
Query: 205 QTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFV--DDILHKNRLLDY 262
QTMLFSAT+ V ++ P+ + V++ + K +TQ + V L + +L Y
Sbjct: 438 QTMLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAMLIY 497
Query: 263 LLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKI 322
L ++ + ++F +K A + + A +HG L Q R R LE+ R G+
Sbjct: 498 LCKELFHRRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNY 557
Query: 323 LVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIK 382
L+ATDVA+RGID+ I V NY+ P E Y+HR+GRT RAGR+G A++L +R +K
Sbjct: 558 LLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEGDRKVLK 617
Query: 383 KIERFTKQQ 391
+ + + Q
Sbjct: 618 GVFKNSSAQ 626
Score = 155 (59.6 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
Identities = 28/73 (38%), Positives = 48/73 (65%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F+S+ L +LK L +G+ PT +Q++ IP A+ G+D++ ++ TGSGKTAAF++P L
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILE 319
Query: 62 KFASSKNKIPVMK 74
+ K+P +
Sbjct: 320 RLLYRPKKVPTTR 332
>UNIPROTKB|F1NM08 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:AADN02030017 IPI:IPI00680367 Ensembl:ENSGALT00000005586
ArrayExpress:F1NM08 Uniprot:F1NM08
Length = 595
Score = 500 (181.1 bits), Expect = 2.0e-59, Sum P(2) = 2.0e-59
Identities = 120/313 (38%), Positives = 175/313 (55%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P LVL PTRELA QV Y + +K+ I GG P Q++ L R EI +ATPG
Sbjct: 156 PICLVLAPTRELAQQVQQVAAEYSRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPG 214
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLID + +GK N LVLDEADRMLDMGF I KIVD RQT+++SAT V
Sbjct: 215 RLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV 274
Query: 218 GNMAENITKDPLILKVNSIE-KKQKNITQSILFVDDILHKN---RLLDYLLRDKRVGQAV 273
+AE+ K+ + + + ++E NI Q + D+ + RL++ ++ +K + +
Sbjct: 275 RQLAEDFLKEYVHINIGALELSANHNILQIVDVCHDVEKDDKLIRLMEEIMSEKE-NKTI 333
Query: 274 VFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGI 333
VF TKR D + ++ G+ A +HGD Q R+ L + G+ IL+ATDVA+RG+
Sbjct: 334 VFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGL 393
Query: 334 DVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLV--NHAERMN-IKKIERFTKQ 390
DV + V NYD P EDY+HRIGRT R+ + G A + N+ +++N + + R Q
Sbjct: 394 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVNDLISVLREANQ 453
Query: 391 QIPIEVINGFEPK 403
I +++ E +
Sbjct: 454 AINPKLLQLIEDR 466
Score = 127 (49.8 bits), Expect = 2.0e-59, Sum P(2) = 2.0e-59
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+NF V++ + + +T+PT +Q Q P A+SG D++ +QTGSGKT +++LPA+
Sbjct: 82 INFYEANFPANVMEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 141
>UNIPROTKB|F1NXI3 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0050681 "androgen receptor binding" evidence=IEA] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0045944 GO:GO:0000122
GO:GO:0003713 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AADN02030017 IPI:IPI00598253
ProteinModelPortal:F1NXI3 Ensembl:ENSGALT00000034644
ArrayExpress:F1NXI3 Uniprot:F1NXI3
Length = 603
Score = 500 (181.1 bits), Expect = 2.0e-59, Sum P(2) = 2.0e-59
Identities = 120/313 (38%), Positives = 175/313 (55%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P LVL PTRELA QV Y + +K+ I GG P Q++ L R EI +ATPG
Sbjct: 164 PICLVLAPTRELAQQVQQVAAEYSRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPG 222
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLID + +GK N LVLDEADRMLDMGF I KIVD RQT+++SAT V
Sbjct: 223 RLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV 282
Query: 218 GNMAENITKDPLILKVNSIE-KKQKNITQSILFVDDILHKN---RLLDYLLRDKRVGQAV 273
+AE+ K+ + + + ++E NI Q + D+ + RL++ ++ +K + +
Sbjct: 283 RQLAEDFLKEYVHINIGALELSANHNILQIVDVCHDVEKDDKLIRLMEEIMSEKE-NKTI 341
Query: 274 VFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGI 333
VF TKR D + ++ G+ A +HGD Q R+ L + G+ IL+ATDVA+RG+
Sbjct: 342 VFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGL 401
Query: 334 DVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLV--NHAERMN-IKKIERFTKQ 390
DV + V NYD P EDY+HRIGRT R+ + G A + N+ +++N + + R Q
Sbjct: 402 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVNDLISVLREANQ 461
Query: 391 QIPIEVINGFEPK 403
I +++ E +
Sbjct: 462 AINPKLLQLIEDR 474
Score = 127 (49.8 bits), Expect = 2.0e-59, Sum P(2) = 2.0e-59
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+NF V++ + + +T+PT +Q Q P A+SG D++ +QTGSGKT +++LPA+
Sbjct: 90 INFYEANFPANVMEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 149
>CGD|CAL0000864 [details] [associations]
symbol:DRS1 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864 GO:GO:0005524
GO:GO:0005730 GO:GO:0042254 GO:GO:0003723 GO:GO:0035690
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_719395.1 ProteinModelPortal:Q5ACK7
STRING:Q5ACK7 GeneID:3639045 KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 477 (173.0 bits), Expect = 2.0e-59, Sum P(2) = 2.0e-59
Identities = 111/301 (36%), Positives = 180/301 (59%)
Query: 89 ERLRFKPA-QPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSR 147
ERL +KP+ ++++LTPTRELALQV ++ ++ + +GG+ +Q + L
Sbjct: 190 ERLLYKPSTSTKVIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKT 249
Query: 148 NPEILLATPGRLIDHM-NSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPV-TRQ 205
P+I++ATPGRLIDH+ NS + +Q+LV+DEADRML+ GF +++ +I+ P RQ
Sbjct: 250 RPDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLIPKHKRQ 309
Query: 206 TMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVD--DILHKNRLLDYL 263
T+LFSAT++ + ++ + + P+ + ++ + + Q + + D L K LL L
Sbjct: 310 TLLFSATMNTRIQDLIQLSLQKPVRIMIDPPKSVASKLLQQFVRIRKRDQL-KPALLYQL 368
Query: 264 LRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKIL 323
L+ + VVF A K A + L + G + LHG L Q R + ++N + + +L
Sbjct: 369 LKGVS-SRVVVFVARKETAHRLRIVLGLLGLKVSELHGALTQEQRLQNVKNFKSLEVPVL 427
Query: 324 VATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHA--ERMNI 381
+ TD+AARG+D+P I V NYD+PK E Y+HR+GRT RAGR+G +++ V + ER +
Sbjct: 428 ICTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRDGTSITFVGESSQERAIV 487
Query: 382 K 382
K
Sbjct: 488 K 488
Score = 150 (57.9 bits), Expect = 2.0e-59, Sum P(2) = 2.0e-59
Identities = 27/75 (36%), Positives = 50/75 (66%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F+++ L VLK + ++ +TKPT +Q +IP A+ G+D++ +QTGSGKT A+M+P +
Sbjct: 131 SFQTLQLSRPVLKGIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIE 190
Query: 62 KFA---SSKNKIPVM 73
+ S+ K+ ++
Sbjct: 191 RLLYKPSTSTKVIIL 205
>UNIPROTKB|Q5ACK7 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864
GO:GO:0005524 GO:GO:0005730 GO:GO:0042254 GO:GO:0003723
GO:GO:0035690 EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13181 RefSeq:XP_719395.1
ProteinModelPortal:Q5ACK7 STRING:Q5ACK7 GeneID:3639045
KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 477 (173.0 bits), Expect = 2.0e-59, Sum P(2) = 2.0e-59
Identities = 111/301 (36%), Positives = 180/301 (59%)
Query: 89 ERLRFKPA-QPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSR 147
ERL +KP+ ++++LTPTRELALQV ++ ++ + +GG+ +Q + L
Sbjct: 190 ERLLYKPSTSTKVIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKT 249
Query: 148 NPEILLATPGRLIDHM-NSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPV-TRQ 205
P+I++ATPGRLIDH+ NS + +Q+LV+DEADRML+ GF +++ +I+ P RQ
Sbjct: 250 RPDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLIPKHKRQ 309
Query: 206 TMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVD--DILHKNRLLDYL 263
T+LFSAT++ + ++ + + P+ + ++ + + Q + + D L K LL L
Sbjct: 310 TLLFSATMNTRIQDLIQLSLQKPVRIMIDPPKSVASKLLQQFVRIRKRDQL-KPALLYQL 368
Query: 264 LRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKIL 323
L+ + VVF A K A + L + G + LHG L Q R + ++N + + +L
Sbjct: 369 LKGVS-SRVVVFVARKETAHRLRIVLGLLGLKVSELHGALTQEQRLQNVKNFKSLEVPVL 427
Query: 324 VATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHA--ERMNI 381
+ TD+AARG+D+P I V NYD+PK E Y+HR+GRT RAGR+G +++ V + ER +
Sbjct: 428 ICTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRDGTSITFVGESSQERAIV 487
Query: 382 K 382
K
Sbjct: 488 K 488
Score = 150 (57.9 bits), Expect = 2.0e-59, Sum P(2) = 2.0e-59
Identities = 27/75 (36%), Positives = 50/75 (66%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F+++ L VLK + ++ +TKPT +Q +IP A+ G+D++ +QTGSGKT A+M+P +
Sbjct: 131 SFQTLQLSRPVLKGIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIE 190
Query: 62 KFA---SSKNKIPVM 73
+ S+ K+ ++
Sbjct: 191 RLLYKPSTSTKVIIL 205
>UNIPROTKB|F1Q073 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AAEX03013992
Ensembl:ENSCAFT00000018089 Uniprot:F1Q073
Length = 767
Score = 492 (178.3 bits), Expect = 2.1e-59, Sum P(2) = 2.1e-59
Identities = 120/315 (38%), Positives = 177/315 (56%)
Query: 89 ERLRFKPAQ-P--RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLL 145
ERL +KP Q P R+LVL PTREL +QV + T++ + +++ GG+ Q L
Sbjct: 247 ERLIYKPRQSPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAV-GGLDVKSQEAAL 305
Query: 146 SRNPEILLATPGRLIDHM-NSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTR 204
P+IL+ATPGRLIDH+ N + S +++L+LDEADRMLD F +++I+ R
Sbjct: 306 RAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHR 365
Query: 205 QTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNR--LLDY 262
QTMLFSAT+ V ++A K+P+ + VNS + Q + + +R ++
Sbjct: 366 QTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAIVAA 425
Query: 263 LLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKI 322
LL ++FT TK+ A + L + G LHG+L Q R L + +I I
Sbjct: 426 LLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDI 485
Query: 323 LVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIK 382
LVATDVAARG+D+ + V N+ +P + YVHR+GRT RAGR G +VSLV ER +K
Sbjct: 486 LVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLK 545
Query: 383 KIERFTKQQIPIEVI 397
+I + K + ++
Sbjct: 546 EIVKAAKAPVKARIL 560
Score = 144 (55.7 bits), Expect = 2.1e-59, Sum P(2) = 2.1e-59
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
++F+ + L +LKA+ +G+ +PT +Q+ IP + G+D+ + TG+GKTAAF LP L
Sbjct: 187 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 246
Query: 61 HKFASSKNKIPVMK 74
+ + PV +
Sbjct: 247 ERLIYKPRQSPVTR 260
>WB|WBGene00002244 [details] [associations]
symbol:laf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0042006
"masculinization of hermaphroditic germ-line" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HOGENOM:HOG000268804 KO:K11594 GO:GO:0042006 EMBL:FO081822
EMBL:FJ348231 RefSeq:NP_001254859.1 UniGene:Cel.25045
ProteinModelPortal:D0PV95 SMR:D0PV95 GeneID:190611
KEGG:cel:CELE_Y71H2AM.19 CTD:190611 WormBase:Y71H2AM.19b
ArrayExpress:D0PV95 Uniprot:D0PV95
Length = 708
Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
Identities = 151/387 (39%), Positives = 215/387 (55%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F + LHE + + + GY +PT VQ+ +IPA GRDL+ +QTGSGKTAAF++P ++
Sbjct: 233 FSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTGSGKTAAFLVPLVN- 291
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A ++ + +++ + + K P LVL+PTREL+LQ+ + ++
Sbjct: 292 -AILQDGPDAVHRSVTSSGGR----------KKQYPSALVLSPTRELSLQIFNESRKFA- 339
Query: 123 YMKKIKAISILGGMP-YLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
Y I + + GG Y Q+ L IL+ATPGRLID M+ G I + LVLDEA
Sbjct: 340 YRTPITSALLYGGRENYKDQIHKLRLGCHILIATPGRLIDVMDQGLIGMEGCRYLVLDEA 399
Query: 182 DRMLDMGFINDIEKIVDATPVT----RQTMLFSATLDGIVGNMAENITKDPLI-LKVNSI 236
DRMLDMGF I +IV+ + R T +FSAT + +A++ K+ + L V +
Sbjct: 400 DRMLDMGFEPQIRQIVECNRMPSKEERITAMFSATFPKEIQLLAQDFLKENYVFLAVGRV 459
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+NI Q I++V++ ++ L+D L +VF TKR A +A LN +
Sbjct: 460 GSTSENIMQKIVWVEEDEKRSYLMDLLDATGDSSLTLVFVETKRGASDLAYYLNRQNYEV 519
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
+HGDL Q R + L+ R G ILVAT VAARG+D+P + HV NYDLP ++YVHR
Sbjct: 520 VTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARGLDIPNVKHVINYDLPSDVDEYVHR 579
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKK 383
IGRTGR G G A S N R NI +
Sbjct: 580 IGRTGRVGNVGLATSFFNDKNR-NIAR 605
>UNIPROTKB|J9P9C6 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AAEX03013992
Ensembl:ENSCAFT00000046251 Uniprot:J9P9C6
Length = 788
Score = 492 (178.3 bits), Expect = 3.0e-59, Sum P(2) = 3.0e-59
Identities = 120/315 (38%), Positives = 177/315 (56%)
Query: 89 ERLRFKPAQ-P--RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLL 145
ERL +KP Q P R+LVL PTREL +QV + T++ + +++ GG+ Q L
Sbjct: 268 ERLIYKPRQSPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAV-GGLDVKSQEAAL 326
Query: 146 SRNPEILLATPGRLIDHM-NSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTR 204
P+IL+ATPGRLIDH+ N + S +++L+LDEADRMLD F +++I+ R
Sbjct: 327 RAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHR 386
Query: 205 QTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNR--LLDY 262
QTMLFSAT+ V ++A K+P+ + VNS + Q + + +R ++
Sbjct: 387 QTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAIVAA 446
Query: 263 LLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKI 322
LL ++FT TK+ A + L + G LHG+L Q R L + +I I
Sbjct: 447 LLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDI 506
Query: 323 LVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIK 382
LVATDVAARG+D+ + V N+ +P + YVHR+GRT RAGR G +VSLV ER +K
Sbjct: 507 LVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLK 566
Query: 383 KIERFTKQQIPIEVI 397
+I + K + ++
Sbjct: 567 EIVKAAKAPVKARIL 581
Score = 144 (55.7 bits), Expect = 3.0e-59, Sum P(2) = 3.0e-59
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
++F+ + L +LKA+ +G+ +PT +Q+ IP + G+D+ + TG+GKTAAF LP L
Sbjct: 208 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 267
Query: 61 HKFASSKNKIPVMK 74
+ + PV +
Sbjct: 268 ERLIYKPRQSPVTR 281
>UNIPROTKB|Q9KV52 [details] [associations]
symbol:rhlB "ATP-dependent RNA helicase RhlB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0006401 "RNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:EEEWPEK
KO:K03732 ProtClustDB:PRK04837 PIR:C82340 RefSeq:NP_229960.1
ProteinModelPortal:Q9KV52 DNASU:2614975 GeneID:2614975
KEGG:vch:VC0305 PATRIC:20079655 Uniprot:Q9KV52
Length = 438
Score = 517 (187.1 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
Identities = 123/299 (41%), Positives = 164/299 (54%)
Query: 97 QPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATP 156
QPR +++ PTRELA+Q+ E L +KA GG Y +Q+ L +IL+ T
Sbjct: 84 QPRAIIMAPTRELAIQIFNDAEPL-LASTGLKAALAYGGESYDKQLAKLQSGVDILIGTT 142
Query: 157 GRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVT--RQTMLFSATLD 214
GR+ID N +H+Q +VLDEADRM D+GFI DI + P R MLFSATL
Sbjct: 143 GRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLNMLFSATLS 202
Query: 215 GIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVV 274
V +A +P + V E+K + Q LF HK LL L+ ++ +A++
Sbjct: 203 YRVQELAFEHMNNPEHVVVEP-EQKTGHRIQEELFYPSNEHKMALLQTLIEEEWPDRAII 261
Query: 275 FTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGID 334
F TK + I L L GD+ Q R R LE +G + ILVATDVAARG+
Sbjct: 262 FANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDILVATDVAARGLH 321
Query: 335 VPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIP 393
+P +THVFNYDLP EDYVHRIGRTGRAG +G ++S +N+ IE + + IP
Sbjct: 322 IPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLPAIESYIEHAIP 380
Score = 108 (43.1 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFM 56
F GL V+ L K G+ T +Q A+P +SG+D+ +QTG+GKT AF+
Sbjct: 11 FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFL 64
>TIGR_CMR|VC_0305 [details] [associations]
symbol:VC_0305 "ATP-dependent RNA helicase RhlB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:EEEWPEK
KO:K03732 ProtClustDB:PRK04837 PIR:C82340 RefSeq:NP_229960.1
ProteinModelPortal:Q9KV52 DNASU:2614975 GeneID:2614975
KEGG:vch:VC0305 PATRIC:20079655 Uniprot:Q9KV52
Length = 438
Score = 517 (187.1 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
Identities = 123/299 (41%), Positives = 164/299 (54%)
Query: 97 QPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATP 156
QPR +++ PTRELA+Q+ E L +KA GG Y +Q+ L +IL+ T
Sbjct: 84 QPRAIIMAPTRELAIQIFNDAEPL-LASTGLKAALAYGGESYDKQLAKLQSGVDILIGTT 142
Query: 157 GRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVT--RQTMLFSATLD 214
GR+ID N +H+Q +VLDEADRM D+GFI DI + P R MLFSATL
Sbjct: 143 GRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLNMLFSATLS 202
Query: 215 GIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVV 274
V +A +P + V E+K + Q LF HK LL L+ ++ +A++
Sbjct: 203 YRVQELAFEHMNNPEHVVVEP-EQKTGHRIQEELFYPSNEHKMALLQTLIEEEWPDRAII 261
Query: 275 FTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGID 334
F TK + I L L GD+ Q R R LE +G + ILVATDVAARG+
Sbjct: 262 FANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDILVATDVAARGLH 321
Query: 335 VPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIP 393
+P +THVFNYDLP EDYVHRIGRTGRAG +G ++S +N+ IE + + IP
Sbjct: 322 IPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLPAIESYIEHAIP 380
Score = 108 (43.1 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFM 56
F GL V+ L K G+ T +Q A+P +SG+D+ +QTG+GKT AF+
Sbjct: 11 FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFL 64
>UNIPROTKB|F1MBQ8 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072332 "intrinsic apoptotic signaling pathway by p53
class mediator" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0060765 "regulation of androgen
receptor signaling pathway" evidence=IEA] [GO:0050681 "androgen
receptor binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IEA] [GO:0036002
"pre-mRNA binding" evidence=IEA] [GO:0033148 "positive regulation
of intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0030331 "estrogen receptor binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0000122 GO:GO:0003713 GO:GO:0033148 GO:GO:0043517
GO:GO:0060765 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
KO:K12823 OMA:IDAMSGY GeneTree:ENSGT00660000095174 CTD:1655
EMBL:DAAA02049347 IPI:IPI01002739 RefSeq:NP_001178324.1
UniGene:Bt.64934 ProteinModelPortal:F1MBQ8 SMR:F1MBQ8 PRIDE:F1MBQ8
Ensembl:ENSBTAT00000024514 GeneID:533700 KEGG:bta:533700
NextBio:20876124 ArrayExpress:F1MBQ8 Uniprot:F1MBQ8
Length = 614
Score = 497 (180.0 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
Identities = 118/291 (40%), Positives = 162/291 (55%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P LVL PTRELA QV Y ++K+ I GG P Q++ L R EI +ATPG
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEY-CRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPG 226
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLID + GK N LVLDEADRMLDMGF I KIVD RQT+++SAT V
Sbjct: 227 RLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV 286
Query: 218 GNMAENITKDPLILKVNSIE-KKQKNITQSILFVDDILHKN---RLLDYLLRDKRVGQAV 273
+AE+ KD + + + ++E NI Q + D+ RL++ ++ +K + +
Sbjct: 287 RQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKE-NKTI 345
Query: 274 VFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGI 333
VF TKR D + ++ G+ A +HGD Q R+ L + G+ IL+ATDVA+RG+
Sbjct: 346 VFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGL 405
Query: 334 DVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKI 384
DV + V NYD P EDY+HRIGRT R+ + G A + NIK++
Sbjct: 406 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN---NIKQV 453
Score = 128 (50.1 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+NF V+ + + +T+PT +Q Q P A+SG D++ +QTGSGKT +++LPA+
Sbjct: 94 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153
>UNIPROTKB|F1PEA6 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] [GO:0003712 "transcription cofactor
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AAEX03006361
Ensembl:ENSCAFT00000018595 Uniprot:F1PEA6
Length = 671
Score = 497 (180.0 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
Identities = 118/291 (40%), Positives = 162/291 (55%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P LVL PTRELA QV Y ++K+ I GG P Q++ L R EI +ATPG
Sbjct: 225 PICLVLAPTRELAQQVQQVAAEY-CRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPG 283
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLID + GK N LVLDEADRMLDMGF I KIVD RQT+++SAT V
Sbjct: 284 RLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV 343
Query: 218 GNMAENITKDPLILKVNSIE-KKQKNITQSILFVDDILHKN---RLLDYLLRDKRVGQAV 273
+AE+ KD + + + ++E NI Q + D+ RL++ ++ +K + +
Sbjct: 344 RQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKE-NKTI 402
Query: 274 VFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGI 333
VF TKR D + ++ G+ A +HGD Q R+ L + G+ IL+ATDVA+RG+
Sbjct: 403 VFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGL 462
Query: 334 DVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKI 384
DV + V NYD P EDY+HRIGRT R+ + G A + NIK++
Sbjct: 463 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN---NIKQV 510
Score = 128 (50.1 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+NF V+ + + +T+PT +Q Q P A+SG D++ +QTGSGKT +++LPA+
Sbjct: 151 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 210
>UNIPROTKB|J3KTA4 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HGNC:HGNC:2746 ChiTaRS:DDX5 ProteinModelPortal:J3KTA4
Ensembl:ENST00000578804 Uniprot:J3KTA4
Length = 614
Score = 497 (180.0 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
Identities = 118/291 (40%), Positives = 162/291 (55%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P LVL PTRELA QV Y ++K+ I GG P Q++ L R EI +ATPG
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEY-CRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPG 226
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLID + GK N LVLDEADRMLDMGF I KIVD RQT+++SAT V
Sbjct: 227 RLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV 286
Query: 218 GNMAENITKDPLILKVNSIE-KKQKNITQSILFVDDILHKN---RLLDYLLRDKRVGQAV 273
+AE+ KD + + + ++E NI Q + D+ RL++ ++ +K + +
Sbjct: 287 RQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKE-NKTI 345
Query: 274 VFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGI 333
VF TKR D + ++ G+ A +HGD Q R+ L + G+ IL+ATDVA+RG+
Sbjct: 346 VFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGL 405
Query: 334 DVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKI 384
DV + V NYD P EDY+HRIGRT R+ + G A + NIK++
Sbjct: 406 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN---NIKQV 453
Score = 128 (50.1 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+NF V+ + + +T+PT +Q Q P A+SG D++ +QTGSGKT +++LPA+
Sbjct: 94 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153
>UNIPROTKB|P17844 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0005516 "calmodulin binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=IEA] [GO:0045069 "regulation of viral genome replication"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IMP;NAS]
[GO:0016049 "cell growth" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IMP] [GO:0072332
"intrinsic apoptotic signaling pathway by p53 class mediator"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA] [GO:2001014
"regulation of skeletal muscle cell differentiation" evidence=ISS]
[GO:0045667 "regulation of osteoblast differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0050681
"androgen receptor binding" evidence=IDA] [GO:0060765 "regulation
of androgen receptor signaling pathway" evidence=IMP] [GO:0033148
"positive regulation of intracellular estrogen receptor signaling
pathway" evidence=IDA] [GO:0003713 "transcription coactivator
activity" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0030331 "estrogen receptor binding" evidence=IDA] [GO:0036002
"pre-mRNA binding" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0016049 GO:GO:0001701 GO:GO:0045944
GO:GO:0006351 GO:GO:0000122 GO:GO:0003713 EMBL:CH471109
GO:GO:0033148 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0045069 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY HOVERGEN:HBG015893
GO:GO:2001014 EMBL:X52104 EMBL:AF015812 EMBL:BT006943 EMBL:AB451257
EMBL:BC016027 EMBL:X15729 EMBL:AJ010931 IPI:IPI00017617 PIR:JC1087
RefSeq:NP_004387.1 UniGene:Hs.279806 PDB:3FE2 PDB:4A4D PDBsum:3FE2
PDBsum:4A4D ProteinModelPortal:P17844 SMR:P17844 DIP:DIP-29844N
IntAct:P17844 MINT:MINT-5000516 STRING:P17844 PhosphoSite:P17844
DMDM:129383 SWISS-2DPAGE:P17844 PaxDb:P17844 PeptideAtlas:P17844
PRIDE:P17844 DNASU:1655 Ensembl:ENST00000225792
Ensembl:ENST00000574715 GeneID:1655 KEGG:hsa:1655 UCSC:uc002jej.2
CTD:1655 GeneCards:GC17M062494 HGNC:HGNC:2746 HPA:CAB005868
HPA:HPA020043 MIM:180630 neXtProt:NX_P17844 PharmGKB:PA27228
InParanoid:P17844 OrthoDB:EOG4BVRTM PhylomeDB:P17844 ChiTaRS:DDX5
EvolutionaryTrace:P17844 GenomeRNAi:1655 NextBio:6816
ArrayExpress:P17844 Bgee:P17844 CleanEx:HS_DDX5
Genevestigator:P17844 GermOnline:ENSG00000108654 Uniprot:P17844
Length = 614
Score = 497 (180.0 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
Identities = 118/291 (40%), Positives = 162/291 (55%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P LVL PTRELA QV Y ++K+ I GG P Q++ L R EI +ATPG
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEY-CRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPG 226
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLID + GK N LVLDEADRMLDMGF I KIVD RQT+++SAT V
Sbjct: 227 RLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV 286
Query: 218 GNMAENITKDPLILKVNSIE-KKQKNITQSILFVDDILHKN---RLLDYLLRDKRVGQAV 273
+AE+ KD + + + ++E NI Q + D+ RL++ ++ +K + +
Sbjct: 287 RQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKE-NKTI 345
Query: 274 VFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGI 333
VF TKR D + ++ G+ A +HGD Q R+ L + G+ IL+ATDVA+RG+
Sbjct: 346 VFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGL 405
Query: 334 DVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKI 384
DV + V NYD P EDY+HRIGRT R+ + G A + NIK++
Sbjct: 406 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN---NIKQV 453
Score = 128 (50.1 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+NF V+ + + +T+PT +Q Q P A+SG D++ +QTGSGKT +++LPA+
Sbjct: 94 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153
>UNIPROTKB|Q5R4I9 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9601 "Pongo abelii" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 KO:K12823 HOVERGEN:HBG015893
GO:GO:2001014 HSSP:P10081 CTD:1655 EMBL:CR861259
RefSeq:NP_001126958.1 UniGene:Pab.18500 ProteinModelPortal:Q5R4I9
PRIDE:Q5R4I9 GeneID:100173977 KEGG:pon:100173977 InParanoid:Q5R4I9
Uniprot:Q5R4I9
Length = 614
Score = 497 (180.0 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
Identities = 118/291 (40%), Positives = 162/291 (55%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P LVL PTRELA QV Y ++K+ I GG P Q++ L R EI +ATPG
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEY-CRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPG 226
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLID + GK N LVLDEADRMLDMGF I KIVD RQT+++SAT V
Sbjct: 227 RLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV 286
Query: 218 GNMAENITKDPLILKVNSIE-KKQKNITQSILFVDDILHKN---RLLDYLLRDKRVGQAV 273
+AE+ KD + + + ++E NI Q + D+ RL++ ++ +K + +
Sbjct: 287 RQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKE-NKTI 345
Query: 274 VFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGI 333
VF TKR D + ++ G+ A +HGD Q R+ L + G+ IL+ATDVA+RG+
Sbjct: 346 VFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGL 405
Query: 334 DVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKI 384
DV + V NYD P EDY+HRIGRT R+ + G A + NIK++
Sbjct: 406 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN---NIKQV 453
Score = 128 (50.1 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+NF V+ + + +T+PT +Q Q P A+SG D++ +QTGSGKT +++LPA+
Sbjct: 94 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153
>MGI|MGI:105037 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 5"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IDA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0030331 "estrogen
receptor binding" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=ISO]
[GO:0036002 "pre-mRNA binding" evidence=ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISO] [GO:0045069 "regulation of viral genome
replication" evidence=ISO] [GO:0045667 "regulation of osteoblast
differentiation" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0060765 "regulation of androgen receptor signaling pathway"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0072332 "intrinsic apoptotic signaling pathway by
p53 class mediator" evidence=ISO] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:105037
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0007623
GO:GO:0001701 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0030529 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
EMBL:AL603664 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014 OrthoDB:EOG4BVRTM
ChiTaRS:DDX5 EMBL:X65627 IPI:IPI00420363 PIR:I48385
UniGene:Mm.220038 ProteinModelPortal:Q61656 SMR:Q61656
DIP:DIP-32293N IntAct:Q61656 STRING:Q61656 PhosphoSite:Q61656
PaxDb:Q61656 PRIDE:Q61656 InParanoid:Q61656 CleanEx:MM_DDX5
Genevestigator:Q61656 GermOnline:ENSMUSG00000020719 Uniprot:Q61656
Length = 614
Score = 497 (180.0 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
Identities = 118/291 (40%), Positives = 162/291 (55%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P LVL PTRELA QV Y ++K+ I GG P Q++ L R EI +ATPG
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEY-CRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPG 226
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLID + GK N LVLDEADRMLDMGF I KIVD RQT+++SAT V
Sbjct: 227 RLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV 286
Query: 218 GNMAENITKDPLILKVNSIE-KKQKNITQSILFVDDILHKN---RLLDYLLRDKRVGQAV 273
+AE+ KD + + + ++E NI Q + D+ RL++ ++ +K + +
Sbjct: 287 RQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKE-NKTI 345
Query: 274 VFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGI 333
VF TKR D + ++ G+ A +HGD Q R+ L + G+ IL+ATDVA+RG+
Sbjct: 346 VFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGL 405
Query: 334 DVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKI 384
DV + V NYD P EDY+HRIGRT R+ + G A + NIK++
Sbjct: 406 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN---NIKQV 453
Score = 128 (50.1 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+NF V+ + + +T+PT +Q Q P A+SG D++ +QTGSGKT +++LPA+
Sbjct: 94 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153
>RGD|619906 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box helicase 5" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
activity" evidence=ISO] [GO:0003713 "transcription coactivator
activity" evidence=IEA;ISO] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0007623 "circadian
rhythm" evidence=IEA;ISO] [GO:0019899 "enzyme binding"
evidence=IDA] [GO:0030331 "estrogen receptor binding"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=IEA;ISO] [GO:0036002
"pre-mRNA binding" evidence=IEA;ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA;ISO] [GO:0045069 "regulation of viral genome
replication" evidence=IMP] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=IDA] [GO:0050681 "androgen receptor binding"
evidence=IEA;ISO] [GO:0060765 "regulation of androgen receptor
signaling pathway" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072332 "intrinsic apoptotic
signaling pathway by p53 class mediator" evidence=IEA;ISO]
[GO:2001014 "regulation of skeletal muscle cell differentiation"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:619906 GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0019899 GO:GO:0000122 GO:GO:0003713 GO:GO:0005516
GO:GO:0048306 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
EMBL:CH473948 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 CTD:1655
EMBL:BC079036 IPI:IPI00464718 RefSeq:NP_001007614.1
UniGene:Rn.162208 IntAct:Q6AYI1 STRING:Q6AYI1
Ensembl:ENSRNOT00000048490 GeneID:287765 KEGG:rno:287765
UCSC:RGD:619906 InParanoid:Q6AYI1 NextBio:626970
Genevestigator:Q6AYI1 Uniprot:Q6AYI1
Length = 615
Score = 497 (180.0 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
Identities = 118/291 (40%), Positives = 162/291 (55%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P LVL PTRELA QV Y ++K+ I GG P Q++ L R EI +ATPG
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEY-CRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPG 226
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLID + GK N LVLDEADRMLDMGF I KIVD RQT+++SAT V
Sbjct: 227 RLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV 286
Query: 218 GNMAENITKDPLILKVNSIE-KKQKNITQSILFVDDILHKN---RLLDYLLRDKRVGQAV 273
+AE+ KD + + + ++E NI Q + D+ RL++ ++ +K + +
Sbjct: 287 RQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKE-NKTI 345
Query: 274 VFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGI 333
VF TKR D + ++ G+ A +HGD Q R+ L + G+ IL+ATDVA+RG+
Sbjct: 346 VFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGL 405
Query: 334 DVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKI 384
DV + V NYD P EDY+HRIGRT R+ + G A + NIK++
Sbjct: 406 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN---NIKQV 453
Score = 128 (50.1 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+NF V+ + + +T+PT +Q Q P A+SG D++ +QTGSGKT +++LPA+
Sbjct: 94 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153
>UNIPROTKB|Q86TM3 [details] [associations]
symbol:DDX53 "Probable ATP-dependent RNA helicase DDX53"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ EMBL:AY039237 EMBL:BC051703
EMBL:BC067878 IPI:IPI00328813 PIR:JC7831 RefSeq:NP_874358.2
UniGene:Hs.434416 PDB:3IUY PDBsum:3IUY ProteinModelPortal:Q86TM3
SMR:Q86TM3 STRING:Q86TM3 PhosphoSite:Q86TM3 DMDM:143811384
PaxDb:Q86TM3 PRIDE:Q86TM3 Ensembl:ENST00000327968 GeneID:168400
KEGG:hsa:168400 UCSC:uc004daj.3 CTD:168400 GeneCards:GC0XP023018
HGNC:HGNC:20083 HPA:HPA003186 neXtProt:NX_Q86TM3
PharmGKB:PA134863598 InParanoid:Q86TM3 OMA:GLKSICI
EvolutionaryTrace:Q86TM3 GenomeRNAi:168400 NextBio:88718
Bgee:Q86TM3 CleanEx:HS_DDX53 Genevestigator:Q86TM3
GermOnline:ENSG00000184735 Uniprot:Q86TM3
Length = 631
Score = 494 (179.0 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
Identities = 116/306 (37%), Positives = 176/306 (57%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P MLVLTPTRELAL V A +Y Y K +K+I I GG Q++ +S+ +I++ATPG
Sbjct: 297 PGMLVLTPTRELALHVEAECSKYS-Y-KGLKSICIYGGRNRNGQIEDISKGVDIIIATPG 354
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIV-DATPVTRQTMLFSATLDGI 216
RL D + +N + LV+DEAD+MLDM F I KI+ D P RQT++ SAT
Sbjct: 355 RLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRP-DRQTVMTSATWPDT 413
Query: 217 VGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVV-F 275
V +A + KDP+I+ V ++ N + + V K L + + V+ F
Sbjct: 414 VRQLALSYLKDPMIVYVGNLNLVAVNTVKQNIIVTTEKEKRALTQEFVENMSPNDKVIMF 473
Query: 276 TATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDV 335
+ K AD ++ NI G A LHG+ Q+ + R +E+ + G IKIL+ TD+ +RG+D+
Sbjct: 474 VSQKHIADDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKSGNIKILITTDIVSRGLDL 533
Query: 336 PAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAE-RMN---IKKIERFTKQQ 391
+THV+NYD P+ + YVHR+G GR G+ G +V+L+ + +M IK ++R Q
Sbjct: 534 NDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQRDSKMAGELIKILDR-ANQS 592
Query: 392 IPIEVI 397
+P +++
Sbjct: 593 VPEDLV 598
Score = 131 (51.2 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
Identities = 24/51 (47%), Positives = 38/51 (74%)
Query: 12 VLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPA-LH 61
+LK++++VG KPT +Q QA P + G DLIV +QTG+GKT ++++P +H
Sbjct: 233 LLKSIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIH 283
>UNIPROTKB|Q96GQ7 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
CTD:55661 HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH EMBL:AY044431
EMBL:AF336851 EMBL:AL049766 EMBL:AL357560 EMBL:BC009304
EMBL:BC011927 EMBL:BC016060 EMBL:BC126287 EMBL:BC130275
EMBL:BC144125 EMBL:AK022979 EMBL:AK000603 EMBL:AF193054
EMBL:AF161377 IPI:IPI00293078 RefSeq:NP_060365.7 UniGene:Hs.129261
UniGene:Hs.65234 ProteinModelPortal:Q96GQ7 SMR:Q96GQ7 IntAct:Q96GQ7
MINT:MINT-1420816 STRING:Q96GQ7 PhosphoSite:Q96GQ7 DMDM:29427946
SWISS-2DPAGE:Q96GQ7 PaxDb:Q96GQ7 PeptideAtlas:Q96GQ7 PRIDE:Q96GQ7
DNASU:55661 Ensembl:ENST00000371764 GeneID:55661 KEGG:hsa:55661
UCSC:uc002xuh.3 GeneCards:GC20P047835 HGNC:HGNC:15837 HPA:HPA047087
neXtProt:NX_Q96GQ7 PharmGKB:PA27213 InParanoid:Q96GQ7
OrthoDB:EOG4NVZJV PhylomeDB:Q96GQ7 ChiTaRS:DDX27 GenomeRNAi:55661
NextBio:60399 ArrayExpress:Q96GQ7 Bgee:Q96GQ7 CleanEx:HS_DDX27
Genevestigator:Q96GQ7 GermOnline:ENSG00000124228 Uniprot:Q96GQ7
Length = 796
Score = 491 (177.9 bits), Expect = 3.5e-59, Sum P(2) = 3.5e-59
Identities = 120/315 (38%), Positives = 176/315 (55%)
Query: 89 ERLRFKPAQ-P--RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLL 145
ERL +KP Q P R+LVL PTREL +QV + T + + +++ GG+ Q L
Sbjct: 278 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAV-GGLDVKSQEAAL 336
Query: 146 SRNPEILLATPGRLIDHM-NSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTR 204
P+IL+ATPGRLIDH+ N + S +++L+LDEADRMLD F +++I+ R
Sbjct: 337 RAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHR 396
Query: 205 QTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNR--LLDY 262
QTMLFSAT+ V ++A K+P+ + VNS + Q + + +R ++
Sbjct: 397 QTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAA 456
Query: 263 LLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKI 322
LL ++FT TK+ A + L + G LHG+L Q R L + +I I
Sbjct: 457 LLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDI 516
Query: 323 LVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIK 382
LVATDVAARG+D+ + V N+ +P + YVHR+GRT RAGR G +VSLV ER +K
Sbjct: 517 LVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLK 576
Query: 383 KIERFTKQQIPIEVI 397
+I + K + ++
Sbjct: 577 EIVKAAKAPVKARIL 591
Score = 145 (56.1 bits), Expect = 3.5e-59, Sum P(2) = 3.5e-59
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
++F+ + L +LKA+ +G+ +PT +Q+ IP + G+D+ + TG+GKTAAF LP L
Sbjct: 218 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 277
Query: 61 HKFASSKNKIPVMK 74
+ + PV +
Sbjct: 278 ERLIYKPRQAPVTR 291
>UNIPROTKB|Q4R6M5 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9541 "Macaca fascicularis" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014
HSSP:P10081 EMBL:AB169157 ProteinModelPortal:Q4R6M5 PRIDE:Q4R6M5
Uniprot:Q4R6M5
Length = 614
Score = 496 (179.7 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
Identities = 118/291 (40%), Positives = 161/291 (55%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P LVL PTRELA QV Y ++K+ I GG P Q++ L R EI +ATPG
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEY-CRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPG 226
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLID + GK N LVLDEADRMLDMGF I KIVD RQT+++SAT V
Sbjct: 227 RLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV 286
Query: 218 GNMAENITKDPLILKVNSIE-KKQKNITQSILFVDDILHKN---RLLDYLLRDKRVGQAV 273
+AE+ KD + + + ++E NI Q + D+ RL++ ++ +K + +
Sbjct: 287 RQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKE-NKTI 345
Query: 274 VFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGI 333
VF TKR D + ++ G+ A +HGD Q R L + G+ IL+ATDVA+RG+
Sbjct: 346 VFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERGWVLNEFKHGKAPILIATDVASRGL 405
Query: 334 DVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKI 384
DV + V NYD P EDY+HRIGRT R+ + G A + NIK++
Sbjct: 406 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN---NIKQV 453
Score = 128 (50.1 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+NF V+ + + +T+PT +Q Q P A+SG D++ +QTGSGKT +++LPA+
Sbjct: 94 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153
>ZFIN|ZDB-GENE-030131-18 [details] [associations]
symbol:si:dkey-156n14.5 "si:dkey-156n14.5"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-18 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
KO:K13178 EMBL:CR626864 IPI:IPI00896916 RefSeq:XP_001923830.1
UniGene:Dr.75535 Ensembl:ENSDART00000129202 GeneID:556764
KEGG:dre:556764 NextBio:20881652 ArrayExpress:F1QBS1 Bgee:F1QBS1
Uniprot:F1QBS1
Length = 671
Score = 486 (176.1 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
Identities = 114/275 (41%), Positives = 155/275 (56%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P LVL PTRELA QV YG +IK+ + GG P Q++ L R EI +ATPG
Sbjct: 169 PICLVLAPTRELAQQVQQVAFDYGK-SSRIKSTCVYGGAPKGPQIRDLERGVEICIATPG 227
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLID + GK N LVLDEADRMLDMGF I KIVD RQT+++SAT V
Sbjct: 228 RLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV 287
Query: 218 GNMAENITKDPLILKVNSIE-KKQKNITQSILFVDDILHKNRLLDYL--LRDKRVGQAVV 274
+AE+ +D + + + ++E NI Q + + N+L+ + + ++ + ++
Sbjct: 288 RQLAEDFLQDYVQINIGALELSANHNILQIVDVCMENEKDNKLIQLMEEIMAEKENKTII 347
Query: 275 FTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGID 334
F TK+ D + R+ G+ A +HGD Q R+ L R G+ IL+ATDVA+RG+D
Sbjct: 348 FVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIATDVASRGLD 407
Query: 335 VPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFA 369
V + V NYD P EDYVHRIGRT R+ G A
Sbjct: 408 VEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTA 442
Score = 138 (53.6 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
NF + V+ L++ + +PT +Q Q P A+SGRD++ +QTGSGKT A++LPA+
Sbjct: 96 NFHQAQFPQYVMDVLLQQNFKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAYLLPAI 154
>UNIPROTKB|I3L976 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF Ensembl:ENSSSCT00000025539 Uniprot:I3L976
Length = 456
Score = 467 (169.5 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
Identities = 110/299 (36%), Positives = 171/299 (57%)
Query: 101 LVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160
LVLTPTRELA Q++ E G + ++ I+GG+ + Q L++ P I++ATPGRLI
Sbjct: 95 LVLTPTRELAFQISEQFEALGSSIG-VQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLI 153
Query: 161 DHMNSGK-INFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGN 219
DH+ + K N L+ LV+DEADR+L+M F +++KI+ P R+T LFSAT+ V
Sbjct: 154 DHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQK 213
Query: 220 MAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATK 279
+ K+P+ V+S + + + Q LF+ K+ L Y+L + ++F +T
Sbjct: 214 LQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKF-KDTYLVYILNELAGNSFMIFCSTC 272
Query: 280 RDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAIT 339
+ A L GF A PLHG + Q+ R +L + IL+ATDVA+RG+D+P +
Sbjct: 273 NNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVD 332
Query: 340 HVFNYDLPKFPEDYVHRIGRTGRAGR--NGFAVSLVNHAERMNIKKIERFTKQQIPIEV 396
V N+D+P +DY+HR+GRT RAGR + AV+ + + +++ E +I I V
Sbjct: 333 VVVNFDIPTHSKDYIHRVGRTARAGRCWSQRAVTFPSIYQASTVQRREPLVNNKINIFV 391
Score = 157 (60.3 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
Identities = 29/68 (42%), Positives = 48/68 (70%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
FK +G+ +++ +A ++G+TKPT +Q +AIP A+ GRD+I ++TGSGKT AF LP L+
Sbjct: 25 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 84
Query: 63 FASSKNKI 70
+ ++
Sbjct: 85 LLETPQRL 92
>UNIPROTKB|F1S0I6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:VLDITHV EMBL:CU468562
EMBL:AEMK01095428 EMBL:AEMK01188208 EMBL:FP312832
Ensembl:ENSSSCT00000004740 Uniprot:F1S0I6
Length = 650
Score = 512 (185.3 bits), Expect = 5.4e-59, Sum P(2) = 5.4e-59
Identities = 119/313 (38%), Positives = 188/313 (60%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P MLVLTPTRELALQV A +Y Y K +K++ + GG Q++ L + +I++ATPG
Sbjct: 319 PGMLVLTPTRELALQVEAECSKYS-Y-KGLKSVCVYGGGDRDGQIKDLLKGVDIIIATPG 376
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIV-DATPVTRQTMLFSATLDGI 216
RL D + + + LVLDEAD+MLDMGF I KI+ D P RQT++ SAT
Sbjct: 377 RLNDLQMNNFVYLKSISYLVLDEADKMLDMGFEPQIMKILLDIRP-DRQTVMTSATWPYA 435
Query: 217 VGNMAENITKDPLILKVNSIEKKQ-KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVF 275
V +A++ K+P+I+ V +++ + Q+I+ + ++ + ++ + ++F
Sbjct: 436 VRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIVTTEDEKRSHIQTFIESMSPKDKVIIF 495
Query: 276 TATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDV 335
+ K AD ++ L I LHG+ Q R R L+N + G+++IL+ATD+A+RG+DV
Sbjct: 496 VSRKAVADHLSSDLGIRHISVESLHGNREQGDRERALKNFKTGKVRILIATDLASRGLDV 555
Query: 336 PAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAE-RMN---IKKIERFTKQQ 391
+THV+NYD P+ E+YVHR+GRTGRAGR G +++L+ ++ ++ I +ER Q
Sbjct: 556 HDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRSDWKIAGELIHILER-ANQS 614
Query: 392 IPIEVINGFEPKK 404
IP +++ E K
Sbjct: 615 IPEDLVEMAERYK 627
Score = 111 (44.1 bits), Expect = 5.4e-59, Sum P(2) = 5.4e-59
Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 12 VLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPA-LH 61
V+ + K G+ KPT +Q QA P + G DLI +QTG+GKT ++++P +H
Sbjct: 252 VMINIKKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIH 302
>WB|WBGene00010260 [details] [associations]
symbol:F58E10.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:Z81555 PIR:T22917
RefSeq:NP_001041134.1 ProteinModelPortal:Q9XUW5 SMR:Q9XUW5
STRING:Q9XUW5 PaxDb:Q9XUW5 PRIDE:Q9XUW5 EnsemblMetazoa:F58E10.3a.1
EnsemblMetazoa:F58E10.3a.2 EnsemblMetazoa:F58E10.3a.3
EnsemblMetazoa:F58E10.3a.4 EnsemblMetazoa:F58E10.3a.5 GeneID:179897
KEGG:cel:CELE_F58E10.3 UCSC:F58E10.3a.1 CTD:179897
WormBase:F58E10.3a InParanoid:Q9XUW5 OMA:YVLQEIT NextBio:907314
ArrayExpress:Q9XUW5 Uniprot:Q9XUW5
Length = 561
Score = 504 (182.5 bits), Expect = 5.4e-59, Sum P(2) = 5.4e-59
Identities = 119/316 (37%), Positives = 176/316 (55%)
Query: 84 IYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQ 143
++ K+ R + P +LVL PTRELA QV + + + +K + GG Q +
Sbjct: 189 VHITKQAHRQRGEGPAVLVLLPTRELAQQVQEVSIDF-CHSLGLKMTCLFGGASKGPQAR 247
Query: 144 LLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVT 203
L R +I++ATPGRL+D +++G N LVLDEADRMLDMGF I+KI+
Sbjct: 248 DLERGVDIVVATPGRLLDFLDNGTTNMKKCSYLVLDEADRMLDMGFEPQIKKIIGQIRPD 307
Query: 204 RQTMLFSATLDGIVGNMAENITKDPLILKVNSIE-KKQKNITQSILFVDDILHKNRLLDY 262
RQT++FSAT V +A + KD L V S+E NITQ + +++ + +L++
Sbjct: 308 RQTLMFSATWPKEVRALASDFQKDAAFLNVGSLELAANHNITQVVDILEEHAKQAKLMEL 367
Query: 263 L--LRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRI 320
L + +++ + ++F TKR AD + + G+ +HGD +Q R+ L+ + G+
Sbjct: 368 LNHIMNQKECKTIIFVETKRKADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKT 427
Query: 321 KILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMN 380
I++ATDVAARG+DV I V NYD P EDYVHRIGRTGR+ + G A + H
Sbjct: 428 PIMLATDVAARGLDVDDIKFVINYDYPNNSEDYVHRIGRTGRSDKKGTAYTFFTHTNASK 487
Query: 381 IK---KIERFTKQQIP 393
K K+ KQ +P
Sbjct: 488 AKDLLKVLDEAKQTVP 503
Score = 119 (46.9 bits), Expect = 5.4e-59, Sum P(2) = 5.4e-59
Identities = 24/40 (60%), Positives = 31/40 (77%)
Query: 21 YTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ KPT +Q + P A+SGRD+I ++TGSGKT AFMLPAL
Sbjct: 149 FQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPAL 188
>UNIPROTKB|C9JMU5 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 EMBL:Z97056 IPI:IPI01022339
HGNC:HGNC:2740 ChiTaRS:DDX17 ProteinModelPortal:C9JMU5 SMR:C9JMU5
STRING:C9JMU5 PRIDE:C9JMU5 Ensembl:ENST00000381633
ArrayExpress:C9JMU5 Bgee:C9JMU5 Uniprot:C9JMU5
Length = 652
Score = 493 (178.6 bits), Expect = 5.4e-59, Sum P(2) = 5.4e-59
Identities = 122/298 (40%), Positives = 164/298 (55%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P LVL PTRELA QV + YG ++K+ I GG P Q++ L R EI +ATPG
Sbjct: 166 PICLVLAPTRELAQQVQQVADDYGK-CSRLKSTCIYGGAPKGPQIRDLERGVEICIATPG 224
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLID + SGK N LVLDEADRMLDMGF I KIVD RQT+++SAT V
Sbjct: 225 RLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV 284
Query: 218 GNMAENITKDPLILKVNSIE-KKQKNITQ--SILFVDDILHKN-RLLDYLLRDKRVGQAV 273
+AE+ +D + V ++E NI Q + + HK +L++ ++ +K + +
Sbjct: 285 RQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKE-NKTI 343
Query: 274 VFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGI 333
+F TKR D + R+ G+ A +HGD Q R+ L R G+ IL+ATDVA+RG+
Sbjct: 344 IFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGL 403
Query: 334 --DVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTK 389
DV + V NYD P EDYVHRIGRT R+ G A + N+K+ K
Sbjct: 404 GFDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPG---NLKQARELIK 458
Score = 130 (50.8 bits), Expect = 5.4e-59, Sum P(2) = 5.4e-59
Identities = 25/58 (43%), Positives = 38/58 (65%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
F + V+ L+ +T+PT +Q Q P A+SGRD++ +QTGSGKT A++LPA+
Sbjct: 94 FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAI 151
>UNIPROTKB|E1C187 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AADN02019007
IPI:IPI00822640 Ensembl:ENSGALT00000011297 ArrayExpress:E1C187
Uniprot:E1C187
Length = 759
Score = 492 (178.3 bits), Expect = 9.5e-59, Sum P(2) = 9.5e-59
Identities = 120/315 (38%), Positives = 176/315 (55%)
Query: 89 ERLRFKPAQ-P--RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLL 145
ERL +KP Q P R+LVL PTREL +QV + T++ + +++ GG+ Q L
Sbjct: 241 ERLIYKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSSVTTCLAV-GGLDVKTQEAAL 299
Query: 146 SRNPEILLATPGRLIDHM-NSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTR 204
P+IL+ATPGRLIDH+ N + S +++L+LDEADRMLD F +++I+ R
Sbjct: 300 RSGPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLCSRHR 359
Query: 205 QTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNR--LLDY 262
QTMLFSAT+ V ++A K+P + VNS + Q + + +R ++
Sbjct: 360 QTMLFSATMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSA 419
Query: 263 LLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKI 322
LL ++FT TK+ A + L + G LHG+L Q R L + +I I
Sbjct: 420 LLTRTFPDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLEALRRFKDEQIDI 479
Query: 323 LVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIK 382
LVATDVAARG+D+ + V N+ +P + YVHR+GRT RAGR G +VSLV ER +K
Sbjct: 480 LVATDVAARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEERKMLK 539
Query: 383 KIERFTKQQIPIEVI 397
+I + K + ++
Sbjct: 540 EIVKAAKTPVKARIL 554
Score = 137 (53.3 bits), Expect = 9.5e-59, Sum P(2) = 9.5e-59
Identities = 25/75 (33%), Positives = 46/75 (61%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGS-GKTAAFMLPA 59
++F+ + L +LKA+ +G+ +PT +Q+ IP + G+D+ + TG+ GKTAAF+LP
Sbjct: 180 LSFQDMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTVGKTAAFILPV 239
Query: 60 LHKFASSKNKIPVMK 74
L + + P+ +
Sbjct: 240 LERLIYKPRQAPITR 254
>MGI|MGI:2385884 [details] [associations]
symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 27"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2385884 GO:GO:0005524
GO:GO:0005634 EMBL:CH466551 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH OrthoDB:EOG4NVZJV
EMBL:AK134274 EMBL:AK138442 EMBL:AL591711 EMBL:BC011321
EMBL:BC024730 EMBL:BC026381 IPI:IPI00122038 IPI:IPI00230236
RefSeq:NP_694705.2 UniGene:Mm.295031 ProteinModelPortal:Q921N6
SMR:Q921N6 PhosphoSite:Q921N6 PaxDb:Q921N6 PRIDE:Q921N6
Ensembl:ENSMUST00000018143 Ensembl:ENSMUST00000150571 GeneID:228889
KEGG:mmu:228889 UCSC:uc008nza.1 InParanoid:Q3UUG2 NextBio:379240
Bgee:Q921N6 CleanEx:MM_DDX27 Genevestigator:Q921N6
GermOnline:ENSMUSG00000017999 Uniprot:Q921N6
Length = 760
Score = 492 (178.3 bits), Expect = 9.7e-59, Sum P(2) = 9.7e-59
Identities = 119/315 (37%), Positives = 176/315 (55%)
Query: 89 ERLRFKPAQP---RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLL 145
ERL +KP Q R+LVL PTREL +QV + T++ + +++ GG+ Q L
Sbjct: 244 ERLIYKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAV-GGLDVKSQEAAL 302
Query: 146 SRNPEILLATPGRLIDHM-NSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTR 204
P+IL+ATPGRLIDH+ N + S +++L+LDEADRMLD F +++I+ R
Sbjct: 303 RAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHR 362
Query: 205 QTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNR--LLDY 262
QTMLFSAT+ V ++A K+P+ + VNS + Q + + +R ++
Sbjct: 363 QTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAA 422
Query: 263 LLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKI 322
LL ++FT TK+ A + L + G LHG+L Q R L + +I I
Sbjct: 423 LLMRTFTDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDI 482
Query: 323 LVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIK 382
LVATDVAARG+D+ + V N+ +P + YVHR+GRT RAGR G +VSLV ER +K
Sbjct: 483 LVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLK 542
Query: 383 KIERFTKQQIPIEVI 397
+I + K + ++
Sbjct: 543 EIVKAAKAPVKARIL 557
Score = 137 (53.3 bits), Expect = 9.7e-59, Sum P(2) = 9.7e-59
Identities = 24/62 (38%), Positives = 41/62 (66%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
++F+ + L +LKA+ +G+ +PT +Q+ IP + G+D+ + TG+GKTAAF LP L
Sbjct: 184 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 243
Query: 61 HK 62
+
Sbjct: 244 ER 245
>TAIR|locus:2222617 [details] [associations]
symbol:AT5G14610 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009664
"plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
wall modification" evidence=RCA] InterPro:IPR000629
InterPro:IPR001202 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00397 PROSITE:PS00039
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194 SMART:SM00456
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GO:GO:0003676
Gene3D:2.20.70.10 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K12823 IPI:IPI00992350 RefSeq:NP_196965.2 UniGene:At.43560
ProteinModelPortal:F4K6V1 SMR:F4K6V1 PRIDE:F4K6V1
EnsemblPlants:AT5G14610.1 GeneID:831313 KEGG:ath:AT5G14610
OMA:YLIPGFM Uniprot:F4K6V1
Length = 712
Score = 522 (188.8 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
Identities = 128/321 (39%), Positives = 186/321 (57%)
Query: 85 YTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQ 143
+ H +R+ P +LVL+PTRELA Q+ ++G KI + GG P Q++
Sbjct: 288 FMHLQRIHNDSRMGPTILVLSPTRELATQIQVEALKFGK-SSKISCACLYGGAPKGPQLK 346
Query: 144 LLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVT 203
+ R +I++ATPGRL D + +I+ + LVLDEADRMLDMGF I KIV+ P
Sbjct: 347 EIERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTK 406
Query: 204 RQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK--KQKNITQSILFVDDILHKNRLLD 261
RQT++++AT V +A ++ +P + + ++++ K+ITQ+I + + K+ L+
Sbjct: 407 RQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAP-MEKHSRLE 465
Query: 262 YLLRDKRVG-QAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRI 320
+LR + G + ++F +TKR D +A L + F AA +HGD Q R+ L R GR
Sbjct: 466 QILRSQEPGSKIIIFCSTKRMCDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRSGRT 524
Query: 321 KILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSL-----VNH 375
+LVATDVAARG+DV I V NYD P EDYVHRIGRTGRAG G A + H
Sbjct: 525 PVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKH 584
Query: 376 AERMNIKKIERFTKQQIPIEV 396
A + IK +E Q++P +V
Sbjct: 585 ASDL-IKILEG-ANQKVPPQV 603
Score = 98 (39.6 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
Identities = 16/49 (32%), Positives = 32/49 (65%)
Query: 14 KALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPA-LH 61
+ + G++ P+ +Q Q+ P A+ RD++ ++TGSGKT +++P +H
Sbjct: 242 RMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMH 290
>TAIR|locus:2081061 [details] [associations]
symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
"vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
Uniprot:Q9SQV1
Length = 1088
Score = 509 (184.2 bits), Expect = 1.5e-58, Sum P(2) = 1.5e-58
Identities = 120/305 (39%), Positives = 175/305 (57%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P +L+L PTRELA Q+ R+G +I + GG P Q++ L R +I++ATPG
Sbjct: 508 PTVLILAPTRELATQIQDEALRFGR-SSRISCTCLYGGAPKGPQLKELERGADIVVATPG 566
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RL D + I+F + +LVLDEADRMLDMGF I KIV+ P RQT++++AT V
Sbjct: 567 RLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEV 626
Query: 218 GNMAENITKDPLILKVNSIEKKQKN--ITQSILFVDDILHKNRLLDYLLRDKRVG-QAVV 274
+A ++ +P+ + + +++ N ITQ + V + K R L+ +LR + G + ++
Sbjct: 627 RKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQ-MEKERRLEQILRSQERGSKVII 685
Query: 275 FTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGID 334
F +TKR D +A + F A +HGD Q R+ L R G+ +L+ATDVAARG+D
Sbjct: 686 FCSTKRLCDHLARSVG-RHFGAVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLD 744
Query: 335 VPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAE---RMNIKKIERFTKQQ 391
+ I V NYD P EDYVHRIGRTGRAG G A + + ++ K+ QQ
Sbjct: 745 IKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAPDLIKVLEGANQQ 804
Query: 392 IPIEV 396
+P +V
Sbjct: 805 VPPQV 809
Score = 130 (50.8 bits), Expect = 1.5e-58, Sum P(2) = 1.5e-58
Identities = 23/59 (38%), Positives = 38/59 (64%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPA 59
+ F+S GL +L+ L+ G+ PT +Q Q P A+ RD++ ++TGSGKT +++PA
Sbjct: 435 ITFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPA 493
>TAIR|locus:2087852 [details] [associations]
symbol:PMH2 "putative mitochondrial RNA helicase 2"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
Uniprot:Q9LUW5
Length = 616
Score = 516 (186.7 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
Identities = 116/291 (39%), Positives = 169/291 (58%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P LVL PTRELA QV + + + I + GG P +QM+ L ++ + TPG
Sbjct: 179 PLCLVLAPTRELARQVE---KEFRESAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGTPG 235
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
R+ID M G +N S +Q +VLDEAD+ML +GF D+E I++ P RQ+M+FSAT+ +
Sbjct: 236 RVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWI 295
Query: 218 GNMAENITKDPLILKV--NSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVF 275
++ + +PL + + +S +K IT + D + + + + G+ +VF
Sbjct: 296 RSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVTEHAKGGKCIVF 355
Query: 276 TATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDV 335
T TKRDAD ++ L S F LHGD+ Q+ R RTL R G ILVATDVAARG+DV
Sbjct: 356 TQTKRDADRLSYALARS-FKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAARGLDV 414
Query: 336 PAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIER 386
P + + +Y+LP E +VHR GRTGRAG+ G A+ + + + +K IER
Sbjct: 415 PNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKIIER 465
Score = 102 (41.0 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
Identities = 21/57 (36%), Positives = 35/57 (61%)
Query: 6 IGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
+G+ ++KAL G K +Q+ + A+ GRD+I ++TG+GKT AF +P + K
Sbjct: 109 LGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDK 165
>UNIPROTKB|A5A6J2 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9598 "Pan troglodytes" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 HOVERGEN:HBG015893 GO:GO:2001014
CTD:1655 OrthoDB:EOG4BVRTM EMBL:AB222120 RefSeq:NP_001138306.1
UniGene:Ptr.274 ProteinModelPortal:A5A6J2 PRIDE:A5A6J2
GeneID:455267 KEGG:ptr:455267 InParanoid:A5A6J2 NextBio:20836697
Uniprot:A5A6J2
Length = 614
Score = 490 (177.5 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
Identities = 117/291 (40%), Positives = 161/291 (55%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P LVL PTRELA QV Y ++K+ I GG P Q++ L R E +ATPG
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEY-CRACRLKSTCIYGGAPKGPQIRDLERGVENCIATPG 226
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLID + GK N LVLDEADRMLDMGF I KIVD RQT+++SAT V
Sbjct: 227 RLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV 286
Query: 218 GNMAENITKDPLILKVNSIE-KKQKNITQSILFVDDILHKN---RLLDYLLRDKRVGQAV 273
+AE+ KD + + + ++E NI Q + D+ RL++ ++ +K + +
Sbjct: 287 RQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKE-NKTI 345
Query: 274 VFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGI 333
VF TKR D + ++ G+ A +HGD Q R+ L + G+ IL+ATDVA+RG+
Sbjct: 346 VFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGL 405
Query: 334 DVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKI 384
DV + V NYD P EDY+HRIGRT R+ + G A + NIK++
Sbjct: 406 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN---NIKQV 453
Score = 128 (50.1 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+NF V+ + + +T+PT +Q Q P A+SG D++ +QTGSGKT +++LPA+
Sbjct: 94 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153
>DICTYBASE|DDB_G0283661 [details] [associations]
symbol:ddx3 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0283661 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000056 GenomeReviews:CM000153_GR GO:GO:0006397
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K11594 HSSP:P09052 RefSeq:XP_638950.1 ProteinModelPortal:Q54QS3
SMR:Q54QS3 PRIDE:Q54QS3 EnsemblProtists:DDB0233447 GeneID:8624189
KEGG:ddi:DDB_G0283661 OMA:SEHICAP Uniprot:Q54QS3
Length = 712
Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
Identities = 149/401 (37%), Positives = 214/401 (53%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F + L +++L + YTKPT VQ+ A+P + RDL+ +QTGSGKTAAF+ P +
Sbjct: 248 SFADVDLGDVLLGNIKHAKYTKPTPVQKSALPIILKNRDLMACAQTGSGKTAAFLFPIIS 307
Query: 62 KFA--SSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
+ P K + + A PR LVL PTRELA Q+ +
Sbjct: 308 GILLDGAPEAPPAYKPGVP---------------RAACPRALVLAPTRELAQQIFDEANK 352
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
+ Y + ++ I GG Q+ L R +IL+AT GRL+D + G+++ S ++ LVLD
Sbjct: 353 FS-YGSPVSSVVIYGGAEVFHQINELDRGCDILVATTGRLVDLLMRGRVSLSKIKYLVLD 411
Query: 180 EADRMLDMGFINDIEKIVDATPVT----RQTMLFSATLDGIVGNMAENITKDPLILKVNS 235
EADRMLDMGF I +I+ + RQT++FSAT + N+A + + + LKV
Sbjct: 412 EADRMLDMGFEPQIRQIISEFDMPGCRDRQTLMFSATFPKQIQNLAADFLYNYIFLKVGV 471
Query: 236 IEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFL 295
+ Q NITQ I +V + + LLDYL K G ++F TKR D + LN F
Sbjct: 472 VGTTQ-NITQRIEYVVEEDKNSYLLDYLSGLKSDGLCLIFVETKRSCDTLTYFLNQRNFP 530
Query: 296 AAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVH 355
+HGDL Q R L++ R LVATD+A+RG+ + + V N+DLP YVH
Sbjct: 531 TTCIHGDLTQPERENALQSFRSFATPFLVATDIASRGLHIGNVNLVINFDLPTDIHIYVH 590
Query: 356 RIGRTGRAGRNGFAVSLVNHAER---MNIKKIERFTKQQIP 393
RIGRTGRAG+ G A+S N + + K+ + + Q IP
Sbjct: 591 RIGRTGRAGKKGLAISFFNEKNKPVGAELLKLMKASNQDIP 631
>DICTYBASE|DDB_G0288501 [details] [associations]
symbol:ddx42 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0288501 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000154_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000112 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
KO:K12835 RefSeq:XP_636700.1 ProteinModelPortal:Q54IV3
STRING:Q54IV3 EnsemblProtists:DDB0233432 GeneID:8626657
KEGG:ddi:DDB_G0288501 OMA:DRDKRGG Uniprot:Q54IV3
Length = 986
Score = 488 (176.8 bits), Expect = 2.7e-58, Sum P(2) = 2.7e-58
Identities = 118/306 (38%), Positives = 166/306 (54%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P L L PTRELA Q+ T +Y Y K +K + GG+ +Q + L EI++ATPG
Sbjct: 379 PIALFLAPTRELAHQIYLETLKYSKYFK-LKTTVLYGGVSKQQQCKELKAGCEIIVATPG 437
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLID + + + LVLDEAD+M D GF + IV+ RQT+LFSAT V
Sbjct: 438 RLIDMIKLKATKLNRVSYLVLDEADKMFDFGFGPQVLSIVNHVRPDRQTLLFSATFKPNV 497
Query: 218 GNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHK-NRLLDYLLRDKRVGQAVVFT 276
A I DP+ + + I +ITQ + + K N L + L G ++F
Sbjct: 498 EEFARTILSDPIKISIGMIGSANSDITQIVQVLKSDSDKWNWLTNQLALLLSQGSVLIFV 557
Query: 277 ATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVP 336
+TK + ++ L GF LHGD +Q R++T++ + G+I IL+ATDVAARG+D+P
Sbjct: 558 STKVAVEQLSSNLTKFGFQTCTLHGDKNQIERSQTIQTFKEGKINILIATDVAARGLDIP 617
Query: 337 AITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVN----HAERMNIKKIERFTKQQI 392
I +V NYD + E + HRIGRTGRAG G A +L+ H IK +E Q +
Sbjct: 618 LIKNVVNYDTSRDIESHTHRIGRTGRAGNTGVAYTLITPKDIHFSVDLIKNLES-ASQFV 676
Query: 393 PIEVIN 398
P E+I+
Sbjct: 677 PPELID 682
Score = 147 (56.8 bits), Expect = 2.7e-58, Sum P(2) = 2.7e-58
Identities = 28/59 (47%), Positives = 42/59 (71%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+F G +++L+A+ K PT +Q+QAIP A+SGRDLI ++TGSGKTA F+ P++
Sbjct: 306 SFGHYGFDDILLQAIAKQSIETPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPSI 364
Score = 38 (18.4 bits), Expect = 7.9e-47, Sum P(2) = 7.9e-47
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 76 NLNQNNNKIYTHKERLRF 93
N+N NNNK ++ RF
Sbjct: 73 NINNNNNKSGFPVKKSRF 90
>GENEDB_PFALCIPARUM|PF14_0437 [details] [associations]
symbol:PF14_0437 "helicase, truncated,
putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_001348611.2 ProteinModelPortal:Q8IL13 IntAct:Q8IL13
MINT:MINT-1661155 PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA
GeneID:812019 KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 484 (175.4 bits), Expect = 3.8e-58, Sum P(2) = 3.8e-58
Identities = 123/328 (37%), Positives = 184/328 (56%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P +LVL PTRELA Q+ ++ KI+ GG+P Q+ L + IL+A PG
Sbjct: 187 PIVLVLAPTRELAEQIRQECIKFSTE-SKIRNTCAYGGVPKSGQIYALKQGVHILIACPG 245
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLID + N + LVLDEAD+MLDMGF I KIVD RQT+++SAT V
Sbjct: 246 RLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQIRPDRQTLMWSATWPKEV 305
Query: 218 GNMAENITKD-PLILKVNSIEKKQ-KNITQSILFVDD---ILHKNRLLDYLLRDKRVGQA 272
+A+++ K+ P+ + V S+ ++I Q I +++ I + LL + +D +
Sbjct: 306 QALAKDLCKEQPIQVNVGSLTLTACRSIKQEIYLLEEHEKIGNLKSLLQRIFKDN--DRI 363
Query: 273 VVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARG 332
+VF TK++AD I L + G A +HGD Q R L + G+ I++ATDVA+RG
Sbjct: 364 IVFVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKTGKSPIMIATDVASRG 423
Query: 333 IDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAE-RM--NIKKIERFTK 389
+D+ + +V N+D P EDYVHRIGRTGRAG +G + + + + R+ ++ KI R ++
Sbjct: 424 LDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADKYRLAKDLVKILRESE 483
Query: 390 QQIP--IEVIN-GFEPKKRIRTYYSRYR 414
Q +P +E I+ +R YYS R
Sbjct: 484 QPVPPQLEKISYSMGNNQRRNPYYSSGR 511
Score = 131 (51.2 bits), Expect = 3.8e-58, Sum P(2) = 3.8e-58
Identities = 29/70 (41%), Positives = 42/70 (60%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPA- 59
++ IG + V+K+L PT +Q Q P A+SG+D+I ++TGSGKT AF+LPA
Sbjct: 113 VSINKIGFPDYVIKSLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAF 172
Query: 60 LHKFASSKNK 69
+H A K
Sbjct: 173 VHILAQPNLK 182
>UNIPROTKB|Q8IL13 [details] [associations]
symbol:PF14_0437 "Helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_001348611.2
ProteinModelPortal:Q8IL13 IntAct:Q8IL13 MINT:MINT-1661155
PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA GeneID:812019
KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 484 (175.4 bits), Expect = 3.8e-58, Sum P(2) = 3.8e-58
Identities = 123/328 (37%), Positives = 184/328 (56%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P +LVL PTRELA Q+ ++ KI+ GG+P Q+ L + IL+A PG
Sbjct: 187 PIVLVLAPTRELAEQIRQECIKFSTE-SKIRNTCAYGGVPKSGQIYALKQGVHILIACPG 245
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLID + N + LVLDEAD+MLDMGF I KIVD RQT+++SAT V
Sbjct: 246 RLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQIRPDRQTLMWSATWPKEV 305
Query: 218 GNMAENITKD-PLILKVNSIEKKQ-KNITQSILFVDD---ILHKNRLLDYLLRDKRVGQA 272
+A+++ K+ P+ + V S+ ++I Q I +++ I + LL + +D +
Sbjct: 306 QALAKDLCKEQPIQVNVGSLTLTACRSIKQEIYLLEEHEKIGNLKSLLQRIFKDN--DRI 363
Query: 273 VVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARG 332
+VF TK++AD I L + G A +HGD Q R L + G+ I++ATDVA+RG
Sbjct: 364 IVFVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKTGKSPIMIATDVASRG 423
Query: 333 IDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAE-RM--NIKKIERFTK 389
+D+ + +V N+D P EDYVHRIGRTGRAG +G + + + + R+ ++ KI R ++
Sbjct: 424 LDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADKYRLAKDLVKILRESE 483
Query: 390 QQIP--IEVIN-GFEPKKRIRTYYSRYR 414
Q +P +E I+ +R YYS R
Sbjct: 484 QPVPPQLEKISYSMGNNQRRNPYYSSGR 511
Score = 131 (51.2 bits), Expect = 3.8e-58, Sum P(2) = 3.8e-58
Identities = 29/70 (41%), Positives = 42/70 (60%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPA- 59
++ IG + V+K+L PT +Q Q P A+SG+D+I ++TGSGKT AF+LPA
Sbjct: 113 VSINKIGFPDYVIKSLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAF 172
Query: 60 LHKFASSKNK 69
+H A K
Sbjct: 173 VHILAQPNLK 182
>TAIR|locus:2032910 [details] [associations]
symbol:RH36 "RNA helicase 36" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
development" evidence=IMP] [GO:0009791 "post-embryonic development"
evidence=IMP] [GO:0090406 "pollen tube" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0009561 "megagametogenesis"
evidence=IMP] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
GO:GO:0009791 GO:GO:0009561 EMBL:AC006341 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
HOGENOM:HOG000268802 OMA:EVRTVEQ GO:GO:0090406 IPI:IPI00521131
PIR:G86297 RefSeq:NP_173078.1 UniGene:At.51634
ProteinModelPortal:Q9SA27 SMR:Q9SA27 PaxDb:Q9SA27 PRIDE:Q9SA27
EnsemblPlants:AT1G16280.1 GeneID:838197 KEGG:ath:AT1G16280
KEGG:dosa:Os07t0633500-00 GeneFarm:1012 TAIR:At1g16280
InParanoid:Q9SA27 PhylomeDB:Q9SA27 ProtClustDB:CLSN2679781
Genevestigator:Q9SA27 GermOnline:AT1G16280 Uniprot:Q9SA27
Length = 491
Score = 457 (165.9 bits), Expect = 3.8e-58, Sum P(2) = 3.8e-58
Identities = 113/305 (37%), Positives = 168/305 (55%)
Query: 90 RLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQ-MQLLSRN 148
RL P LV+TPTRELA Q+ + G + ++ I+GGM L Q M L+SR
Sbjct: 119 RLAEDPYGVFALVVTPTRELAFQLAEQFKALGSCLN-LRCSVIVGGMDMLTQTMSLVSR- 176
Query: 149 PEILLATPGR---LIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQ 205
P I++ TPGR L+++ FS + LVLDEADR+LD+GF +++ I P +RQ
Sbjct: 177 PHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPKSRQ 236
Query: 206 TMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYL-- 263
T+LFSAT+ + + E+ + + K +TQ +F D + L+ L
Sbjct: 237 TLLFSATMTSNLQALLEHSSNKAYFYEAYEGLKTVDTLTQQFIFEDKDAKELYLVHILSQ 296
Query: 264 LRDKRVGQAVVFTATKRDAD---IIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRI 320
+ DK + A++F +T R ++ D L + +H Q+ R L + G++
Sbjct: 297 MEDKGIRSAMIFVSTCRTCQRLSLMLDELEVENIA---MHSLNSQSMRLSALSKFKSGKV 353
Query: 321 KILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMN 380
IL+ATDVA+RG+D+P + V NYD+P+ P DYVHR+GRT RAGR G AVS++ +
Sbjct: 354 PILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKL 413
Query: 381 IKKIE 385
I KIE
Sbjct: 414 IHKIE 418
Score = 158 (60.7 bits), Expect = 3.8e-58, Sum P(2) = 3.8e-58
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
NF+ +GL E ++ ++G KPT VQ +P ++GRD++ +QTGSGKTAAF LP LH
Sbjct: 59 NFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILH 118
Query: 62 KFA 64
+ A
Sbjct: 119 RLA 121
>ZFIN|ZDB-GENE-031030-3 [details] [associations]
symbol:ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
49" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-3 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14778
HOVERGEN:HBG100512 CTD:54555 EMBL:BC047834 IPI:IPI00551936
RefSeq:NP_938179.1 UniGene:Dr.77634 ProteinModelPortal:Q7ZUT9
STRING:Q7ZUT9 GeneID:386632 KEGG:dre:386632 InParanoid:Q7ZUT9
NextBio:20813961 ArrayExpress:Q7ZUT9 Uniprot:Q7ZUT9
Length = 468
Score = 455 (165.2 bits), Expect = 3.8e-58, Sum P(2) = 3.8e-58
Identities = 113/306 (36%), Positives = 168/306 (54%)
Query: 101 LVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160
LVLTPTRELA Q+ G + +K I+GGM + Q LS+ P +++ATPGRL
Sbjct: 74 LVLTPTRELAYQIAEQFRVLGKPLG-LKDCIIVGGMDMVTQGLELSKKPHVVVATPGRLA 132
Query: 161 DHMNSGK-INFSHLQILVLDEADRMLDMG---FINDIEKIVDATPVTRQTMLFSATLDGI 216
DH+ S IN + +Q L++DEADR+L+ G F D+E I+ A P RQT+LFSATL
Sbjct: 133 DHIRSSDTINLNRIQFLIMDEADRLLEQGCTDFTKDLEVILSAVPAKRQTLLFSATLTDT 192
Query: 217 VGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLR---DKRVGQAV 273
+ + P + S + + + Q + + + K+ L +L++ D+ ++
Sbjct: 193 LQQLQSIAMNRPFFWEHKSDVQTVEELDQRFILTPEKV-KDAYLVHLIQTFQDEHDDWSI 251
Query: 274 V-FTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARG 332
+ FT T + I+ L F LH + Q R L + KIL+ATDVAARG
Sbjct: 252 IIFTNTCKSCQILTMMLREFNFPTISLHSMMKQRQRFANLAKFKSNVFKILIATDVAARG 311
Query: 333 IDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERF--TK- 389
+D+P + V N++ P P+ Y+HR+GRT RAGRNG +++LV + I IE TK
Sbjct: 312 LDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYDIHLINAIEEQNQTKL 371
Query: 390 QQIPIE 395
++ PIE
Sbjct: 372 KEFPIE 377
Score = 160 (61.4 bits), Expect = 3.8e-58, Sum P(2) = 3.8e-58
Identities = 30/62 (48%), Positives = 46/62 (74%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F+S+GL E +++ ++G ++PT VQE+ IPA + GRD + ++TGSGKTAAF+LP L K
Sbjct: 4 FESLGLSEWLIQQCKQMGISRPTAVQEKCIPAILDGRDCMGCAKTGSGKTAAFVLPVLQK 63
Query: 63 FA 64
+
Sbjct: 64 LS 65
>DICTYBASE|DDB_G0280147 [details] [associations]
symbol:ddx47 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
Uniprot:Q54VT4
Length = 546
Score = 448 (162.8 bits), Expect = 3.8e-58, Sum P(2) = 3.8e-58
Identities = 99/293 (33%), Positives = 163/293 (55%)
Query: 101 LVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160
L L PTRELA Q+ G + +K ++GG+ + Q L++ P +++ +PGR++
Sbjct: 191 LALAPTRELAYQIADQFNAIGSTIG-VKTCVLVGGIDSMSQSLALAKKPHVVVGSPGRVL 249
Query: 161 DHMNSGK-INFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGN 219
H+ K N ++ ++DEADR+ F ++ I+ P R T LFSAT+ V
Sbjct: 250 HHLEHTKGFNLRSIKYFIMDEADRLFSADFEEEVNNILKVIPKERNTYLFSATMTSKVAK 309
Query: 220 MAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATK 279
+ +P+ ++V S + + Q LFV +K+ L Y+L + ++FT+T
Sbjct: 310 LQRASLVNPVKVQVASKYQTVDTLLQQYLFVP-FKYKDCYLAYILNELAGNLTIIFTSTC 368
Query: 280 RDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAIT 339
+ IA L GF A P++GD+ Q R +L ++G ILVATDVAARG+D+P++
Sbjct: 369 ASSTKIAMMLRNLGFGAIPINGDMDQGKRLASLNKFKQGTKSILVATDVAARGLDIPSVD 428
Query: 340 HVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQI 392
V NYD+P ++YVHR+GRT RAG +G A+++V + ++IE K+++
Sbjct: 429 LVINYDVPTNSKEYVHRVGRTARAGNSGRAITIVTQYDVEMYQRIEFVLKKKL 481
Score = 167 (63.8 bits), Expect = 3.8e-58, Sum P(2) = 3.8e-58
Identities = 30/62 (48%), Positives = 46/62 (74%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F+S+G+H ++ A K+G+ KP +Q ++IP A+ GRD+I +QTGSGKTAAF++P L
Sbjct: 119 VTFESLGVHPQIIDACNKLGFNKPKEIQRESIPWALKGRDIIGLAQTGSGKTAAFVIPVL 178
Query: 61 HK 62
K
Sbjct: 179 QK 180
>FB|FBgn0003261 [details] [associations]
symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
Length = 719
Score = 493 (178.6 bits), Expect = 5.2e-58, Sum P(2) = 5.2e-58
Identities = 119/303 (39%), Positives = 166/303 (54%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P LVL PTRELA Q+ +G ++ + GG P QM+ L R EI++ATPG
Sbjct: 355 PIALVLAPTRELAQQIQQVATEFGS-SSYVRNTCVFGGAPKGGQMRDLQRGCEIVIATPG 413
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLID +++G N LVLDEADRMLDMGF I KIV RQT+++SAT V
Sbjct: 414 RLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEV 473
Query: 218 GNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRD-----KRVGQA 272
+AE+ + + + + S+E + + ++ V D K L LL D + G+
Sbjct: 474 KQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYDTSESPGKI 533
Query: 273 VVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARG 332
++F TKR D + + G +HGD Q+ R+ L R G+ ILVATDVAARG
Sbjct: 534 IIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARG 593
Query: 333 IDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNG--FAVSLVNHAERMN-IKKIERFTK 389
+DV I +V N+D P+ EDY+HRIGRTGR+ G FA N+A++ + + R
Sbjct: 594 LDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKALVDVLREAN 653
Query: 390 QQI 392
Q+I
Sbjct: 654 QEI 656
Score = 124 (48.7 bits), Expect = 5.2e-58, Sum P(2) = 5.2e-58
Identities = 23/59 (38%), Positives = 38/59 (64%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+F + L + V+K + + GY PT +Q Q P A+SG + + ++TGSGKT ++LPA+
Sbjct: 282 DFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAI 340
>POMBASE|SPBC17D1.06 [details] [associations]
symbol:dbp3 "ATP-dependent RNA helicase Dbp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000027
"ribosomal large subunit assembly" evidence=ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPBC17D1.06 GO:GO:0005524
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S
PIR:T39709 RefSeq:NP_596388.1 ProteinModelPortal:Q10202
STRING:Q10202 PRIDE:Q10202 EnsemblFungi:SPBC17D1.06.1
GeneID:2540213 KEGG:spo:SPBC17D1.06 OMA:DRILVFC NextBio:20801345
Uniprot:Q10202
Length = 578
Score = 507 (183.5 bits), Expect = 6.1e-58, Sum P(2) = 6.1e-58
Identities = 126/330 (38%), Positives = 183/330 (55%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
PR+LV++PTRELA+Q T + +KA+ + GG P Q + ++N +++ TPG
Sbjct: 237 PRVLVVSPTRELAIQ-TYENLNSLIQGTNLKAVVVYGGAPKSEQARA-AKNASVIIGTPG 294
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPV-----TRQTMLFSAT 212
RL+D +N G I+ S + LVLDEADRMLD GF DI I+ TP +RQT+ FSAT
Sbjct: 295 RLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFSAT 354
Query: 213 LDGIVGNMAENITKDPLILKVNSIE-KKQKNITQSILFVDDILHKNRLLDYLLRDK---- 267
V +A KDP+ + + S E +NITQ + +DD K R+LD LLR
Sbjct: 355 WPESVRALAATFLKDPVKITIGSDELAASQNITQIVEILDDPRSKERMLDNLLRKHLSSG 414
Query: 268 -RVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVAT 326
+ + ++F K++A + L + +HGD+ Q AR + L + + G+ +LVAT
Sbjct: 415 GKDDKILIFVLYKKEAARVEGTL-ARKYNVVGIHGDMSQGARLQALNDFKSGKCPVLVAT 473
Query: 327 DVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMN---IKK 383
DVAARG+D+P + V N P EDYVHRIGRTGRA G A++ ++ + +
Sbjct: 474 DVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTPQDKSHAGELVN 533
Query: 384 IERFTKQQIPIEVIN-GFEPKKRIRTYYSR 412
+ R KQ IP + G K ++ Y SR
Sbjct: 534 VLRQAKQDIPEGLFKFGTAVKPKLNAYGSR 563
Score = 106 (42.4 bits), Expect = 6.1e-58, Sum P(2) = 6.1e-58
Identities = 27/67 (40%), Positives = 40/67 (59%)
Query: 10 ELVLKALVKVG---YTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFAS- 65
EL + A ++ G Y +PT +Q P ++GRD++ ++TGSGKT AF +PAL
Sbjct: 171 ELDVSAKLREGLKNYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGL 230
Query: 66 SKNK-IP 71
S NK +P
Sbjct: 231 SDNKSVP 237
>DICTYBASE|DDB_G0293064 [details] [associations]
symbol:DDB_G0293064 species:44689 "Dictyostelium
discoideum" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0293064 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AAFI02000199
RefSeq:XP_629301.1 ProteinModelPortal:Q54CB8
EnsemblProtists:DDB0191757 GeneID:8629024 KEGG:ddi:DDB_G0293064
InParanoid:Q54CB8 OMA:VLYWSAT Uniprot:Q54CB8
Length = 573
Score = 503 (182.1 bits), Expect = 6.1e-58, Sum P(2) = 6.1e-58
Identities = 121/323 (37%), Positives = 189/323 (58%)
Query: 90 RLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNP 149
R + P P +LV+ PTRELA Q+ E+Y L + I+ +I GG P Q LSR P
Sbjct: 206 RQSYYPG-PSVLVVAPTRELANQINQEAEQY-LRLVNIEIATIYGGAPRRSQQLQLSRRP 263
Query: 150 EILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLF 209
+I++ TPGR+ID M SG ++ ++ LV+DEADR+++MGF I+ I ++ RQ + +
Sbjct: 264 KIVVGTPGRIIDFMESGDLSLKNISFLVVDEADRLMEMGFEQQIDGIFNSIRPDRQVLYW 323
Query: 210 SATLDGIVGNMAENITKDPLILKVNSIE-KKQKNITQSILFVDDILHK-NRLLDYL---- 263
SAT V + AE + P+ L++ S + KNI+Q V K + L+D L
Sbjct: 324 SATWPKKVSSFAEKHIRTPIRLQIGSSQLTANKNISQKFKIVPTDADKVDALMDTLGEIY 383
Query: 264 LRDKRVGQAVVFTATKRDADIIADRLNISG--FLAAPLHGDLHQNARNRTLENLRRGRIK 321
D++ Q ++FT TK+ AD + + +G LHGD+ QN R R +++ + R+
Sbjct: 384 SADEKA-QTLIFTMTKKGADTLKHYIQSNGDNVRIDTLHGDVDQNRRERIVQDFKNKRLD 442
Query: 322 ILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLV--NHAERM 379
I+VATDVA+RG+D+ I+HV N+ LP E YVHRIGRTGRAG G + S++ N + M
Sbjct: 443 IVVATDVASRGLDIKGISHVINFSLPSDCETYVHRIGRTGRAGALGTSHSILSNNSLDDM 502
Query: 380 ----NIKKIERFTKQQIPIEVIN 398
++ + + ++Q++P E ++
Sbjct: 503 ELVGDLTNLLQRSEQEVPSEFLD 525
Score = 110 (43.8 bits), Expect = 6.1e-58, Sum P(2) = 6.1e-58
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 13 LKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL-HKFASSK 67
+K + + KPT VQ P A+SG D++ S+TGSGKT +F+LPA+ H A +
Sbjct: 151 IKNFLSKKFEKPTPVQSLGWPIALSGSDMLGISKTGSGKTLSFILPAIEHILAQPR 206
>TIGR_CMR|CPS_4097 [details] [associations]
symbol:CPS_4097 "ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K05590
ProtClustDB:PRK11192 RefSeq:YP_270752.2 ProteinModelPortal:Q47WS0
STRING:Q47WS0 PRIDE:Q47WS0 GeneID:3520098 KEGG:cps:CPS_4097
PATRIC:21471063 OMA:YLDKGHF BioCyc:CPSY167879:GI48-4110-MONOMER
Uniprot:Q47WS0
Length = 430
Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
Identities = 129/315 (40%), Positives = 192/315 (60%)
Query: 92 RFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEI 151
R KP PR+L+LTPTRELA+Q+ +E+ + KIK I GG+ Y +L+ +I
Sbjct: 80 RTKPGFPRVLILTPTRELAIQIGEDSEQL-TELTKIKTGVITGGVNYGSHADILTSTTDI 138
Query: 152 LLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSA 211
L+ATPGRL++++ + + + ++ILVLDEADRMLD+GF I +IV +QTMLFSA
Sbjct: 139 LVATPGRLLEYIENEQFDAREIEILVLDEADRMLDLGFSETINRIVAEARWRKQTMLFSA 198
Query: 212 TLDGI-VGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVG 270
TL+ V AE + +P+ L+ K++ I Q + DD HK LL L+ + V
Sbjct: 199 TLESPGVQLFAEEVLNEPVFLESKPSRKEKAVIHQWLHLADDANHKLNLLVNTLKQEGVE 258
Query: 271 QAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAA 330
+ VVF + ++ +L L G + Q+ RN+ +E ++G +K+LVATDVAA
Sbjct: 259 RTVVFANKRETVQYLSGKLYAEELPCVWLEGKMPQDKRNKAIERFKKGEVKVLVATDVAA 318
Query: 331 RGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQ 390
RG+D+ I+HV N+D+P+ + Y+HRIGRTGRAG+ G A+SLV + I KIER+TK+
Sbjct: 319 RGLDIDDISHVINFDMPRKVDIYIHRIGRTGRAGKKGTAISLVEAHDMGVIGKIERYTKE 378
Query: 391 QIPIEVINGFEPKKR 405
++ I PK +
Sbjct: 379 RLSRRFIQELRPKNK 393
Score = 155 (59.6 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 56/175 (32%), Positives = 83/175 (47%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLP-ALH 61
F+ L +L ++ K+GYTKPT +QE IP A+ G+D++ S+ TG+GKTAAF+LP A H
Sbjct: 15 FEQFDLDSELLASINKIGYTKPTSIQELVIPQAMVGKDVLASAPTGTGKTAAFLLPIAQH 74
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ K P + L I T L + + LT ++ V YG
Sbjct: 75 LLDYPRTK-PGFPRVL------ILTPTRELAIQIGEDSEQ-LTELTKIKTGVITGGVNYG 126
Query: 122 LYMKKIKAIS-ILGGMP-----YLRQMQLLSRNPEIL-LATPGRLIDHMNSGKIN 169
+ + + + IL P Y+ Q +R EIL L R++D S IN
Sbjct: 127 SHADILTSTTDILVATPGRLLEYIENEQFDAREIEILVLDEADRMLDLGFSETIN 181
>TAIR|locus:2087832 [details] [associations]
symbol:PMH1 "putative mitochondrial RNA helicase 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IMP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0043234 GO:GO:0003677 GO:GO:0009651
GO:GO:0009409 GO:GO:0009414 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268800 ProtClustDB:CLSN2684125 EMBL:AY091091
EMBL:AJ010461 IPI:IPI00517476 PIR:T51341 RefSeq:NP_188870.1
UniGene:At.25190 ProteinModelPortal:Q9LUW6 SMR:Q9LUW6 IntAct:Q9LUW6
STRING:Q9LUW6 PaxDb:Q9LUW6 PRIDE:Q9LUW6 EnsemblPlants:AT3G22310.1
GeneID:821800 KEGG:ath:AT3G22310 GeneFarm:922 TAIR:At3g22310
InParanoid:Q9LUW6 OMA:VSQGRQV PhylomeDB:Q9LUW6
Genevestigator:Q9LUW6 GermOnline:AT3G22310 Uniprot:Q9LUW6
Length = 610
Score = 512 (185.3 bits), Expect = 9.9e-58, Sum P(2) = 9.9e-58
Identities = 117/292 (40%), Positives = 172/292 (58%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P+ LVL PTRELA QV + + + I + GG P +QM+ L+ ++ + TPG
Sbjct: 191 PQCLVLAPTRELARQVE---KEFRESAPSLDTICLYGGTPIGQQMRELNYGIDVAVGTPG 247
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
R+ID M G +N S +Q +VLDEAD+ML +GF D+E I+ P RQ+M+FSAT+ +
Sbjct: 248 RIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMFSATMPSWI 307
Query: 218 GNMAENITKDPLILKV--NSIEKKQKNITQSILFVDDILHKNRLLDYLLRDK-RVGQAVV 274
++ + +PL + + +S +K IT + D + ++ L+++ + G+ +V
Sbjct: 308 RSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSY-GRASIIGPLVKEHGKGGKCIV 366
Query: 275 FTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGID 334
FT TKRDAD +A L S + LHGD+ Q R RTL R G ILVATDVAARG+D
Sbjct: 367 FTQTKRDADRLAFGLAKS-YKCEALHGDISQAQRERTLAGFRDGNFSILVATDVAARGLD 425
Query: 335 VPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIER 386
VP + V +Y+LP E +VHR GRTGRAG+ G A+ + + +K IE+
Sbjct: 426 VPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVKMIEK 477
Score = 99 (39.9 bits), Expect = 9.9e-58, Sum P(2) = 9.9e-58
Identities = 21/57 (36%), Positives = 35/57 (61%)
Query: 6 IGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
+G+ ++KAL G K +Q+ + A+ GRD+I ++TG+GKT AF +P + K
Sbjct: 121 LGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDK 177
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 479 (173.7 bits), Expect = 1.1e-57, Sum P(2) = 1.1e-57
Identities = 123/308 (39%), Positives = 166/308 (53%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P LVL PTRELA Q+ +G ++ I GG P +Q + L R EI++ATPG
Sbjct: 231 PIALVLAPTRELAQQIQQVAIEFGSNTH-VRNTCIFGGAPKGQQARDLERGVEIVIATPG 289
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLID + G + LVLDEADRMLDMGF I KI+ RQ +++SAT V
Sbjct: 290 RLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQVLMWSATWPKEV 349
Query: 218 GNMAENITKDPLILKVNSIE-KKQKNITQSILFVDDILHKNRLLDYLLRD---KRVGQAV 273
+AE + + + + S+ NI Q I+ V D K L LL D + + +
Sbjct: 350 RQLAEEFLNNYIQVNIGSLSLSANHNILQ-IVDVCDENEKLMKLIKLLTDISAENETKTI 408
Query: 274 VFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGI 333
+F TK+ D I ++ G+ A +HGD Q R+ L + R GR ILVATDVAARG+
Sbjct: 409 IFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVATDVAARGL 468
Query: 334 DVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNH--AERMN-IKKIERFTKQ 390
DV + V NYD P EDYVHRIGRTGR+ G A +L H A + N + ++ R Q
Sbjct: 469 DVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKANDLIQVLREANQ 528
Query: 391 QIPIEVIN 398
I +++N
Sbjct: 529 TINPKLMN 536
Score = 145 (56.1 bits), Expect = 1.1e-57, Sum P(2) = 1.1e-57
Identities = 28/60 (46%), Positives = 41/60 (68%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F+ G + V+ + K G+ KPT +Q Q P A+SGRDL+ +QTGSGKT A++LPA+
Sbjct: 157 IEFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAV 216
>ZFIN|ZDB-GENE-031001-8 [details] [associations]
symbol:ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
27" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031001-8 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 CTD:55661 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 EMBL:AY648729 IPI:IPI00501087
RefSeq:NP_001002869.1 UniGene:Dr.76523 ProteinModelPortal:Q6DRN0
PRIDE:Q6DRN0 GeneID:378844 KEGG:dre:378844 InParanoid:Q6DRN0
NextBio:20813841 ArrayExpress:Q6DRN0 Bgee:Q6DRN0 Uniprot:Q6DRN0
Length = 776
Score = 484 (175.4 bits), Expect = 1.1e-57, Sum P(2) = 1.1e-57
Identities = 119/315 (37%), Positives = 172/315 (54%)
Query: 89 ERLRFKPAQP---RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLL 145
ERL +KP + R+LVL PTREL +QV + + I +GG+ Q L
Sbjct: 261 ERLIYKPRETQVTRVLVLVPTRELGIQVHTVARQLAQFTT-ISTCLAVGGLDLKSQEAAL 319
Query: 146 SRNPEILLATPGRLIDHM-NSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTR 204
P++L+ATPGRLIDH+ N+ S ++IL+LDEADRMLD F +++I+ R
Sbjct: 320 RAGPDVLIATPGRLIDHLHNTPSFELSQIEILILDEADRMLDEYFEEQMKEIIRMCAYQR 379
Query: 205 QTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNR--LLDY 262
QTMLFSAT+ V ++A K P+ + VNS + Q + + +R ++
Sbjct: 380 QTMLFSATMSEEVKDLASVSLKQPVRIFVNSNTDVAPYLRQEFVRIRPNKEGDREAIVAA 439
Query: 263 LLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKI 322
LL ++FT TK+ A + L + G LHG+L Q R +L + +I I
Sbjct: 440 LLTRTFQDHVMLFTQTKKQAHRMHILLGLMGLKVGELHGNLSQTQRLESLRRFKDEQIDI 499
Query: 323 LVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIK 382
LVATDVAARG+D+ + V N+ +P + YVHR+GRT RAG+ G +VSLV ER +K
Sbjct: 500 LVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGKVGRSVSLVGETERKMLK 559
Query: 383 KIERFTKQQIPIEVI 397
+I + K + VI
Sbjct: 560 EIVKKAKFPVKARVI 574
Score = 137 (53.3 bits), Expect = 1.1e-57, Sum P(2) = 1.1e-57
Identities = 24/62 (38%), Positives = 40/62 (64%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L +LKA+ +G+ +PT +Q+ +P + G+D+ + TG+GKTAAFMLP L
Sbjct: 201 LTFHDMNLSRPLLKAISTMGFKQPTPIQKACVPVGLLGKDICACAATGTGKTAAFMLPVL 260
Query: 61 HK 62
+
Sbjct: 261 ER 262
>FB|FBgn0021995 [details] [associations]
symbol:Rs1 "Rs1" species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0042254
"ribosome biogenesis" evidence=NAS] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE013599 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0016779 HSSP:P10081 GeneTree:ENSGT00550000074997 KO:K13181
CTD:6247 EMBL:BT004908 RefSeq:NP_651970.1 UniGene:Dm.11481
SMR:Q7JQN4 STRING:Q7JQN4 EnsemblMetazoa:FBtr0088788 GeneID:44087
KEGG:dme:Dmel_CG2173 UCSC:CG2173-RA FlyBase:FBgn0021995
InParanoid:Q7JQN4 OMA:EHYIHRV OrthoDB:EOG42NGFQ GenomeRNAi:44087
NextBio:836725 Uniprot:Q7JQN4
Length = 782
Score = 489 (177.2 bits), Expect = 1.8e-57, Sum P(2) = 1.8e-57
Identities = 122/327 (37%), Positives = 186/327 (56%)
Query: 89 ERLRFKP----AQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQL 144
ERL ++P A R+LVL PTREL QV T++ + ++I GG+ Q +
Sbjct: 217 ERLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTTIDVGLAI-GGLDVKAQEAV 275
Query: 145 LSRNPEILLATPGRLIDHM-NSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVT 203
L +NP+I++ATPGRLIDH+ N+ +++L+LDEADRMLD F +++I+++ T
Sbjct: 276 LRQNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKT 335
Query: 204 RQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNR--LLD 261
RQTMLFSAT+ V ++A P+ + VN+ ++ N+ Q + + + +R +L
Sbjct: 336 RQTMLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILA 395
Query: 262 YLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIK 321
L+ +VF TK+ A + L + G A LHG+L Q R +L+ + +I
Sbjct: 396 SLICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQID 455
Query: 322 ILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNI 381
+L+ATDVAARG+D+ + V N+ +P E Y+HR+GRT RAGR G +VSL ER +
Sbjct: 456 VLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIV 515
Query: 382 KKI----ERFTKQQI-PIEVINGFEPK 403
K I E K +I P E+I + K
Sbjct: 516 KDIIKNAESTIKNRIIPPEIIEKYRNK 542
Score = 130 (50.8 bits), Expect = 1.8e-57, Sum P(2) = 1.8e-57
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F + L +++A+ +GY PT +Q IP A+ GRD+ + TG+GKTAA+MLP L
Sbjct: 158 SFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLE 217
Query: 62 K 62
+
Sbjct: 218 R 218
>GENEDB_PFALCIPARUM|PF08_0096 [details] [associations]
symbol:PF08_0096 "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003724 "RNA helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 KO:K11594
HSSP:P10081 EMBL:AL844507 RefSeq:XP_001349420.1
ProteinModelPortal:Q8IAU1 IntAct:Q8IAU1 MINT:MINT-1660402
EnsemblProtists:PF08_0096:mRNA GeneID:2655295 KEGG:pfa:PF08_0096
EuPathDB:PlasmoDB:PF3D7_0810600 HOGENOM:HOG000280970 OMA:NNPFNNN
ProtClustDB:CLSZ2432713 Uniprot:Q8IAU1
Length = 941
Score = 330 (121.2 bits), Expect = 4.3e-57, Sum P(2) = 4.3e-57
Identities = 84/201 (41%), Positives = 113/201 (56%)
Query: 202 VTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLD 261
+ RQT++FSAT + +A+ L V + + I Q+++FV++ N LL+
Sbjct: 579 IKRQTIMFSATFRKEIQVLAKEYLCKYTFLLVGKVGSTNEYIKQNLVFVEEENKCNYLLN 638
Query: 262 YLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIK 321
LL + G ++F TKR ADII L+ A +HGD Q+ R R L+ +RG
Sbjct: 639 -LLAENNNGLTILFVETKRKADIIERFLSNQKLNAVCIHGDKSQDERERALKLFKRGIKN 697
Query: 322 ILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNI 381
ILVATDVAARG+D+ I HV N+DLP +DY+HRIGRTGRAG G A S VN + NI
Sbjct: 698 ILVATDVAARGLDISNIKHVINFDLPSNIDDYIHRIGRTGRAGNIGIATSFVNE-DNKNI 756
Query: 382 KKIERFT----KQQIPIEVIN 398
K T QQIP +N
Sbjct: 757 FKDLLATLEECNQQIPRWFLN 777
Score = 297 (109.6 bits), Expect = 4.3e-57, Sum P(2) = 4.3e-57
Identities = 75/195 (38%), Positives = 112/195 (57%)
Query: 5 SIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL-HKF 63
S+ L+EL+L + KV Y K T +Q+ ++ ++ DLI +QTGSGKTA ++LP + H
Sbjct: 366 SLNLNELLLSNIKKVNYDKTTPIQKYSLNIIMNRNDLIGVAQTGSGKTAGYLLPIINHML 425
Query: 64 ASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLY 123
+ K ++N N+ +N Y ++ L P L+L PTRELA+Q+ +++ +
Sbjct: 426 INDPPKHTYYEQN-NKTSN-YYFNRVCL------PICLILAPTRELAVQIFYDAKKF-CF 476
Query: 124 MKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADR 183
IK + + GG Q+ L + +I++ATPGRL D + GKI LVLDEADR
Sbjct: 477 ETGIKPVVLYGGNNIKTQLSNLDKGADIIVATPGRLNDILEKGKIKLFLTTFLVLDEADR 536
Query: 184 MLDMGFINDIEKIVD 198
MLDMGF I IV+
Sbjct: 537 MLDMGFSPQIRSIVN 551
Score = 40 (19.1 bits), Expect = 4.3e-30, Sum P(2) = 4.3e-30
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 78 NQNNNKIYTHKERL---RFKPAQPR 99
N NNN I + R+ R+KP R
Sbjct: 233 NNNNNNINNNNGRMEKPRYKPPMLR 257
>UNIPROTKB|Q8IAU1 [details] [associations]
symbol:PF08_0096 "RNA helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0003724 "RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 KO:K11594
HSSP:P10081 EMBL:AL844507 RefSeq:XP_001349420.1
ProteinModelPortal:Q8IAU1 IntAct:Q8IAU1 MINT:MINT-1660402
EnsemblProtists:PF08_0096:mRNA GeneID:2655295 KEGG:pfa:PF08_0096
EuPathDB:PlasmoDB:PF3D7_0810600 HOGENOM:HOG000280970 OMA:NNPFNNN
ProtClustDB:CLSZ2432713 Uniprot:Q8IAU1
Length = 941
Score = 330 (121.2 bits), Expect = 4.3e-57, Sum P(2) = 4.3e-57
Identities = 84/201 (41%), Positives = 113/201 (56%)
Query: 202 VTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLD 261
+ RQT++FSAT + +A+ L V + + I Q+++FV++ N LL+
Sbjct: 579 IKRQTIMFSATFRKEIQVLAKEYLCKYTFLLVGKVGSTNEYIKQNLVFVEEENKCNYLLN 638
Query: 262 YLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIK 321
LL + G ++F TKR ADII L+ A +HGD Q+ R R L+ +RG
Sbjct: 639 -LLAENNNGLTILFVETKRKADIIERFLSNQKLNAVCIHGDKSQDERERALKLFKRGIKN 697
Query: 322 ILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNI 381
ILVATDVAARG+D+ I HV N+DLP +DY+HRIGRTGRAG G A S VN + NI
Sbjct: 698 ILVATDVAARGLDISNIKHVINFDLPSNIDDYIHRIGRTGRAGNIGIATSFVNE-DNKNI 756
Query: 382 KKIERFT----KQQIPIEVIN 398
K T QQIP +N
Sbjct: 757 FKDLLATLEECNQQIPRWFLN 777
Score = 297 (109.6 bits), Expect = 4.3e-57, Sum P(2) = 4.3e-57
Identities = 75/195 (38%), Positives = 112/195 (57%)
Query: 5 SIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL-HKF 63
S+ L+EL+L + KV Y K T +Q+ ++ ++ DLI +QTGSGKTA ++LP + H
Sbjct: 366 SLNLNELLLSNIKKVNYDKTTPIQKYSLNIIMNRNDLIGVAQTGSGKTAGYLLPIINHML 425
Query: 64 ASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLY 123
+ K ++N N+ +N Y ++ L P L+L PTRELA+Q+ +++ +
Sbjct: 426 INDPPKHTYYEQN-NKTSN-YYFNRVCL------PICLILAPTRELAVQIFYDAKKF-CF 476
Query: 124 MKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADR 183
IK + + GG Q+ L + +I++ATPGRL D + GKI LVLDEADR
Sbjct: 477 ETGIKPVVLYGGNNIKTQLSNLDKGADIIVATPGRLNDILEKGKIKLFLTTFLVLDEADR 536
Query: 184 MLDMGFINDIEKIVD 198
MLDMGF I IV+
Sbjct: 537 MLDMGFSPQIRSIVN 551
Score = 40 (19.1 bits), Expect = 4.3e-30, Sum P(2) = 4.3e-30
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 78 NQNNNKIYTHKERL---RFKPAQPR 99
N NNN I + R+ R+KP R
Sbjct: 233 NNNNNNINNNNGRMEKPRYKPPMLR 257
>UNIPROTKB|Q5T1V6 [details] [associations]
symbol:DDX59 "Probable ATP-dependent RNA helicase DDX59"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 PROSITE:PS51083
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AL136611 EMBL:AL445483 EMBL:BC014183 EMBL:BC041801
IPI:IPI00010449 IPI:IPI00217157 RefSeq:NP_001026895.2
UniGene:Hs.497332 PDB:2YQP PDBsum:2YQP ProteinModelPortal:Q5T1V6
SMR:Q5T1V6 PhosphoSite:Q5T1V6 DMDM:74762230 PaxDb:Q5T1V6
PRIDE:Q5T1V6 DNASU:83479 Ensembl:ENST00000331314
Ensembl:ENST00000447706 GeneID:83479 KEGG:hsa:83479 UCSC:uc009wzk.3
CTD:83479 GeneCards:GC01M200594 HGNC:HGNC:25360 HPA:HPA047166
neXtProt:NX_Q5T1V6 PharmGKB:PA142672000 HOGENOM:HOG000006599
HOVERGEN:HBG106120 InParanoid:Q5T1V6 OMA:VTRPIID PhylomeDB:Q5T1V6
EvolutionaryTrace:Q5T1V6 GenomeRNAi:83479 NextBio:72419
ArrayExpress:Q5T1V6 Bgee:Q5T1V6 CleanEx:HS_DDX59
Genevestigator:Q5T1V6 Uniprot:Q5T1V6
Length = 619
Score = 457 (165.9 bits), Expect = 6.9e-57, Sum P(2) = 6.9e-57
Identities = 100/315 (31%), Positives = 184/315 (58%)
Query: 90 RLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNP 149
R F+ P L+LTPTRELA+Q+ + + ++K + ++GG+P Q+ L ++
Sbjct: 264 RALFESKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQHV 323
Query: 150 EILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLF 209
++++ATPGRL+D + + ++I+V+DEAD ML MGF + I++ P QT+L
Sbjct: 324 KVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDCQTILV 383
Query: 210 SATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRV 269
SAT+ + +A + +P+ + N+ Q IL+V+D K +L + +L DK++
Sbjct: 384 SATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKKLFE-ILNDKKL 442
Query: 270 GQ--AVVFTATKRDADIIADRLN-ISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVAT 326
+ +VF K AD++++ + I+G + +H + Q R L+ L G +++V+T
Sbjct: 443 FKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVST 502
Query: 327 DVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNH-AERM--NIKK 383
V RG+D+ ++ V N+D+P ++YVH+IGR GR G+NG A++ +N+ ++R+ +I K
Sbjct: 503 GVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFWDIAK 562
Query: 384 IERFTKQQIPIEVIN 398
+ T +P +++N
Sbjct: 563 RVKPTGSILPPQLLN 577
Score = 146 (56.5 bits), Expect = 6.9e-57, Sum P(2) = 6.9e-57
Identities = 31/71 (43%), Positives = 46/71 (64%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
++F+ L E++ L K GY PT +Q Q IP + GRD++ S+ TGSGKTAAF+LP +
Sbjct: 203 IDFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVI 262
Query: 61 HKFASSKNKIP 71
+ A ++K P
Sbjct: 263 MR-ALFESKTP 272
>ZFIN|ZDB-GENE-990415-272 [details] [associations]
symbol:vasa "vasa homolog" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008406 "gonad development" evidence=IEP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-990415-272 GO:GO:0005524 GO:GO:0008406
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HSSP:Q58083 HOGENOM:HOG000268804 HOVERGEN:HBG015893 KO:K13982
EMBL:AB005147 IPI:IPI00495861 RefSeq:NP_571132.1 UniGene:Dr.559
ProteinModelPortal:O42107 SMR:O42107 STRING:O42107 PRIDE:O42107
GeneID:30263 KEGG:dre:30263 CTD:30263 InParanoid:O42107
NextBio:20806710 ArrayExpress:O42107 Bgee:O42107 Uniprot:O42107
Length = 716
Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
Identities = 145/380 (38%), Positives = 211/380 (55%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+ GL + + K + K GY KPT VQ+ IP +GRDL+ +QTGSGKTAAF+LP L
Sbjct: 277 MTFEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 336
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+F + + + K + Q +P +++ PTREL Q+ ++
Sbjct: 337 QRFMT--DGVAASKFSEIQ-----------------EPEAIIVAPTRELINQIYLEARKF 377
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y ++ + + GG+ ++ + + +L ATPGRL D + GKI S ++ LVLDE
Sbjct: 378 A-YGTCVRPVVVYGGINTGYTIREVLKGCNVLCATPGRLHDLIGRGKIGLSKVRYLVLDE 436
Query: 181 ADRMLDMGFINDIEKIVDATP-----VTRQTMLFSATLDGIVGNMAENITK-DPLILKVN 234
ADRMLDMGF ++ K+V A+P RQT++FSAT + MA + K D + L V
Sbjct: 437 ADRMLDMGFEPEMRKLV-ASPGMPSKEERQTLMFSATYPEDIQRMAADFLKVDYIFLAVG 495
Query: 235 SIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGF 294
+ ++ Q+++ VD +++LL+ LLR + +VF TKR AD IA L
Sbjct: 496 VVGGACSDVEQTVVQVDQYSKRDQLLE-LLRATGNERTMVFVETKRSADFIATFLCQEKI 554
Query: 295 LAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYV 354
+HGD Q R + L + R G +LVAT VAARG+D+ + HV N+D+P ++YV
Sbjct: 555 STTSIHGDREQREREKALSDFRLGHCPVLVATSVAARGLDIEQVQHVVNFDMPSSIDEYV 614
Query: 355 HRIGRTGRAGRNGFAVSLVN 374
HRIGRTGR G G AVS N
Sbjct: 615 HRIGRTGRCGNTGRAVSFFN 634
>TAIR|locus:504955106 [details] [associations]
symbol:emb1138 "embryo defective 1138" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009941
"chloroplast envelope" evidence=IDA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009570 GO:GO:0016020 GO:GO:0046872 GO:GO:0008270
GO:GO:0009941 GO:GO:0003723 EMBL:AF058914 Gene3D:4.10.60.10
SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268805 UniGene:At.23875 EMBL:AJ010457 EMBL:AC137518
EMBL:AY080625 EMBL:AY091068 EMBL:AY094485 EMBL:AY123000
EMBL:AY128278 EMBL:BT000713 EMBL:BT002289 EMBL:BT002456
EMBL:AY102126 EMBL:BT004533 EMBL:AK229821 IPI:IPI00523172
IPI:IPI00656967 PIR:T01202 PIR:T51738 RefSeq:NP_001031943.1
RefSeq:NP_680225.2 UniGene:At.66764 ProteinModelPortal:Q8L7S8
SMR:Q8L7S8 STRING:Q8L7S8 PaxDb:Q8L7S8 PRIDE:Q8L7S8
EnsemblPlants:AT5G26742.2 GeneID:832713 KEGG:ath:AT5G26742
GeneFarm:1570 TAIR:At5g26742 InParanoid:Q8L7S8 OMA:ISHEQGW
PhylomeDB:Q8L7S8 ProtClustDB:CLSN2680279 Genevestigator:Q8L7S8
Uniprot:Q8L7S8
Length = 748
Score = 513 (185.6 bits), Expect = 1.0e-56, Sum P(2) = 1.0e-56
Identities = 117/320 (36%), Positives = 182/320 (56%)
Query: 70 IPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKA 129
IP++K+ + + YT R P+ LVL PTRELA QV + Y+
Sbjct: 158 IPIIKRLTEEAGD--YT---AFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPYLS---T 209
Query: 130 ISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGF 189
+ + GG+ Y Q L+R ++++ TPGR+ID + + ++ LVLDEAD+ML +GF
Sbjct: 210 VCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGF 269
Query: 190 INDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKV--NSIEKKQKNITQSI 247
+E I++ P RQ+MLFSAT+ V +A +PL + + + EK + I
Sbjct: 270 EEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYA 329
Query: 248 LFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP-LHGDLHQN 306
+ + L D + + G+ +VFT TKRDAD ++ L +S +A LHGD+ Q+
Sbjct: 330 IATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVS--LALSNSIATEALHGDISQH 387
Query: 307 ARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRN 366
R RTL R+G+ +LVATDVA+RG+D+P + V +Y+LP PE +VHR GRTGRAG+
Sbjct: 388 QRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKE 447
Query: 367 GFAVSLVNHAERMNIKKIER 386
G A+ + +++ ++ +ER
Sbjct: 448 GSAILMHTSSQKRTVRSLER 467
Score = 92 (37.4 bits), Expect = 1.0e-56, Sum P(2) = 1.0e-56
Identities = 19/71 (26%), Positives = 37/71 (52%)
Query: 6 IGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFAS 65
+ L + + ++L K G T +Q + A+ GRD+I ++TG+GKT AF +P + +
Sbjct: 107 LSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTE 166
Query: 66 SKNKIPVMKKN 76
+++
Sbjct: 167 EAGDYTAFRRS 177
>MGI|MGI:1915247 [details] [associations]
symbol:Ddx59 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 59"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915247
GO:GO:0005524 GO:GO:0046872 GO:GO:0003723 GO:GO:0005622
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
GeneTree:ENSGT00610000086076 CTD:83479 HOGENOM:HOG000006599
HOVERGEN:HBG106120 OMA:VTRPIID EMBL:AK004833 EMBL:AK013179
EMBL:AK076462 EMBL:BC023840 IPI:IPI00119928 IPI:IPI00226119
RefSeq:NP_080776.1 UniGene:Mm.385462 UniGene:Mm.486546
ProteinModelPortal:Q9DBN9 SMR:Q9DBN9 PhosphoSite:Q9DBN9
PRIDE:Q9DBN9 Ensembl:ENSMUST00000027655 GeneID:67997 KEGG:mmu:67997
UCSC:uc007cut.1 UCSC:uc007cuu.2 InParanoid:Q9DBN9 OrthoDB:EOG4K9BBZ
ChiTaRS:DDX59 NextBio:326168 Bgee:Q9DBN9 CleanEx:MM_DDX59
Genevestigator:Q9DBN9 Uniprot:Q9DBN9
Length = 619
Score = 446 (162.1 bits), Expect = 1.8e-56, Sum P(2) = 1.8e-56
Identities = 94/307 (30%), Positives = 183/307 (59%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P L+LTPTRELA+Q+ + + ++K + ++GG+P Q+ L ++ ++++ATPG
Sbjct: 272 PSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLRQHVKVIIATPG 331
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RL+D + ++ S ++I+V+DEAD ML MGF + +++ TP QT+L SAT+ +
Sbjct: 332 RLLDIIKQSSVSLSGIKIVVVDEADTMLKMGFQQQVLDVLEHTPGDCQTILVSATIPDSI 391
Query: 218 GNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQ--AVVF 275
+ + + +P+ + ++ Q IL+V+D K +L + +L D+++ + +VF
Sbjct: 392 EQLTDQLLHNPVRIITGDKNLPCASVRQIILWVEDPAKKKKLFE-ILNDQKLFKPPVLVF 450
Query: 276 TATKRDADIIADRLN-ISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGID 334
K AD++++ + I+G + +H + Q R L+ L G +++V+T V RG+D
Sbjct: 451 VDCKLGADLLSEAVQKITGLNSTSIHSEKSQVERRDILKGLLEGDYEVVVSTGVLGRGLD 510
Query: 335 VPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNH-AERM--NIKKIERFTKQQ 391
+ + V N+D+P ++YVH++GR GR G+NG A++ +N+ ++R+ ++ K + T
Sbjct: 511 LVNVKLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWDVAKRVKPTGSI 570
Query: 392 IPIEVIN 398
+P +++N
Sbjct: 571 LPPQLLN 577
Score = 153 (58.9 bits), Expect = 1.8e-56, Sum P(2) = 1.8e-56
Identities = 32/71 (45%), Positives = 47/71 (66%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
++F+ G E + + L K GY PT +Q Q IP + GRD++ S+ TGSGKTAAF+LP +
Sbjct: 203 IDFEHCGFPETLNQNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVI 262
Query: 61 HKFASSKNKIP 71
+ A S++K P
Sbjct: 263 IR-AFSEDKTP 272
>UNIPROTKB|Q5ZKB9 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962 GO:GO:0008026
eggNOG:COG0513 GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797
OMA:YSHARMK InterPro:IPR014014 PROSITE:PS51195 HSSP:P26196
EMBL:AJ720165 IPI:IPI00595692 UniGene:Gga.2331
ProteinModelPortal:Q5ZKB9 SMR:Q5ZKB9 Ensembl:ENSGALT00000012405
HOVERGEN:HBG106685 InParanoid:Q5ZKB9 OrthoDB:EOG4J1182
ArrayExpress:Q5ZKB9 Uniprot:Q5ZKB9
Length = 483
Score = 460 (167.0 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 102/308 (33%), Positives = 168/308 (54%)
Query: 89 ERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRN 148
ERL K + +V+ PTRELALQV+ + +M K ++ GG + L
Sbjct: 156 ERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDT 215
Query: 149 PEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTML 208
+++ATPGR++D + G H+Q++VLDEAD++L F+ +E I+ P RQ +L
Sbjct: 216 VHVVIATPGRILDLIKKGVAKVEHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILL 275
Query: 209 FSATLDGIVGNMAENITKDPLILKVNSIEKKQ-KNITQSILFVDDILHKNRLLDYLLRDK 267
+SAT V + + P ++N +E+ K +TQ +V + K L+ L
Sbjct: 276 YSATFPLSVQKFMNSHLQKPY--EINLMEELTLKGVTQYYAYVTE-RQKVHCLNTLFSRL 332
Query: 268 RVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATD 327
++ Q+++F + + +++A +++ G+ +H + Q RNR + R G + LV TD
Sbjct: 333 QINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 392
Query: 328 VAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERF 387
+ RGID+ A+ V N+D PK E Y+HRIGR+GR G G A++L+ + +R N+K IE
Sbjct: 393 LFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQ 452
Query: 388 TKQQI-PI 394
+I PI
Sbjct: 453 LGTEIKPI 460
Score = 138 (53.6 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 24/71 (33%), Positives = 46/71 (64%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F+ L +L + ++G+ KP+ +QE++IP A+SGRD++ ++ G+GK+ A+++P L +
Sbjct: 98 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157
Query: 63 FASSKNKIPVM 73
K+ I M
Sbjct: 158 LDLKKDNIQAM 168
>UNIPROTKB|E1BDM8 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:DAAA02040478
EMBL:DAAA02040479 IPI:IPI00697295 RefSeq:NP_001137339.1
UniGene:Bt.12357 PRIDE:E1BDM8 Ensembl:ENSBTAT00000011952
GeneID:513906 KEGG:bta:513906 NextBio:20871085 Uniprot:E1BDM8
Length = 483
Score = 460 (167.0 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 102/308 (33%), Positives = 168/308 (54%)
Query: 89 ERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRN 148
ERL K + +V+ PTRELALQV+ + +M K ++ GG + L
Sbjct: 156 ERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDT 215
Query: 149 PEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTML 208
+++ATPGR++D + G H+Q++VLDEAD++L F+ +E I+ P RQ +L
Sbjct: 216 VHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILL 275
Query: 209 FSATLDGIVGNMAENITKDPLILKVNSIEKKQ-KNITQSILFVDDILHKNRLLDYLLRDK 267
+SAT V + + P ++N +E+ K +TQ +V + K L+ L
Sbjct: 276 YSATFPLSVQKFMNSHLQKPY--EINLMEELTLKGVTQYYAYVTE-RQKVHCLNTLFSRL 332
Query: 268 RVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATD 327
++ Q+++F + + +++A +++ G+ +H + Q RNR + R G + LV TD
Sbjct: 333 QINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 392
Query: 328 VAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERF 387
+ RGID+ A+ V N+D PK E Y+HRIGR+GR G G A++L+ + +R N+K IE
Sbjct: 393 LFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQ 452
Query: 388 TKQQI-PI 394
+I PI
Sbjct: 453 LGTEIKPI 460
Score = 138 (53.6 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 24/71 (33%), Positives = 46/71 (64%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F+ L +L + ++G+ KP+ +QE++IP A+SGRD++ ++ G+GK+ A+++P L +
Sbjct: 98 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157
Query: 63 FASSKNKIPVM 73
K+ I M
Sbjct: 158 LDLKKDNIQAM 168
>UNIPROTKB|E2RR01 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:AAEX03003444
RefSeq:XP_849975.1 Ensembl:ENSCAFT00000019743 GeneID:479414
KEGG:cfa:479414 NextBio:20854600 Uniprot:E2RR01
Length = 483
Score = 460 (167.0 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 102/308 (33%), Positives = 168/308 (54%)
Query: 89 ERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRN 148
ERL K + +V+ PTRELALQV+ + +M K ++ GG + L
Sbjct: 156 ERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDT 215
Query: 149 PEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTML 208
+++ATPGR++D + G H+Q++VLDEAD++L F+ +E I+ P RQ +L
Sbjct: 216 VHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILL 275
Query: 209 FSATLDGIVGNMAENITKDPLILKVNSIEKKQ-KNITQSILFVDDILHKNRLLDYLLRDK 267
+SAT V + + P ++N +E+ K +TQ +V + K L+ L
Sbjct: 276 YSATFPLSVQKFMNSHLQKPY--EINLMEELTLKGVTQYYAYVTE-RQKVHCLNTLFSRL 332
Query: 268 RVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATD 327
++ Q+++F + + +++A +++ G+ +H + Q RNR + R G + LV TD
Sbjct: 333 QINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 392
Query: 328 VAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERF 387
+ RGID+ A+ V N+D PK E Y+HRIGR+GR G G A++L+ + +R N+K IE
Sbjct: 393 LFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQ 452
Query: 388 TKQQI-PI 394
+I PI
Sbjct: 453 LGTEIKPI 460
Score = 138 (53.6 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 24/71 (33%), Positives = 46/71 (64%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F+ L +L + ++G+ KP+ +QE++IP A+SGRD++ ++ G+GK+ A+++P L +
Sbjct: 98 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157
Query: 63 FASSKNKIPVM 73
K+ I M
Sbjct: 158 LDLKKDNIQAM 168
>UNIPROTKB|P26196 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0004386 "helicase activity" evidence=TAS]
[GO:0003724 "RNA helicase activity" evidence=TAS] [GO:0016442
"RNA-induced silencing complex" evidence=IDA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IDA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
GO:GO:0010467 GO:GO:0003723 GO:GO:0000932 GO:GO:0016442
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0033962 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
KO:K12614 OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043928 HOVERGEN:HBG106685 OrthoDB:EOG4J1182
EMBL:Z11685 EMBL:BC065007 EMBL:D17532 IPI:IPI00030320 PIR:S22651
RefSeq:NP_001244120.1 RefSeq:NP_004388.2 UniGene:Hs.408461 PDB:1VEC
PDB:2WAX PDB:2WAY PDBsum:1VEC PDBsum:2WAX PDBsum:2WAY
ProteinModelPortal:P26196 SMR:P26196 DIP:DIP-29195N IntAct:P26196
STRING:P26196 PhosphoSite:P26196 DMDM:116241327
DOSAC-COBS-2DPAGE:P26196 PaxDb:P26196 PeptideAtlas:P26196
PRIDE:P26196 DNASU:1656 Ensembl:ENST00000264018
Ensembl:ENST00000526070 Ensembl:ENST00000534980 GeneID:1656
KEGG:hsa:1656 UCSC:uc001pub.2 CTD:1656 GeneCards:GC11M118654
HGNC:HGNC:2747 HPA:CAB004668 HPA:HPA024201 HPA:HPA026644 MIM:600326
neXtProt:NX_P26196 PharmGKB:PA27229 InParanoid:P26196
PhylomeDB:P26196 ChiTaRS:DDX6 EvolutionaryTrace:P26196
GenomeRNAi:1656 NextBio:6820 ArrayExpress:P26196 Bgee:P26196
CleanEx:HS_DDX6 Genevestigator:P26196 GermOnline:ENSG00000110367
Uniprot:P26196
Length = 483
Score = 460 (167.0 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 102/308 (33%), Positives = 168/308 (54%)
Query: 89 ERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRN 148
ERL K + +V+ PTRELALQV+ + +M K ++ GG + L
Sbjct: 156 ERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDT 215
Query: 149 PEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTML 208
+++ATPGR++D + G H+Q++VLDEAD++L F+ +E I+ P RQ +L
Sbjct: 216 VHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILL 275
Query: 209 FSATLDGIVGNMAENITKDPLILKVNSIEKKQ-KNITQSILFVDDILHKNRLLDYLLRDK 267
+SAT V + + P ++N +E+ K +TQ +V + K L+ L
Sbjct: 276 YSATFPLSVQKFMNSHLQKPY--EINLMEELTLKGVTQYYAYVTE-RQKVHCLNTLFSRL 332
Query: 268 RVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATD 327
++ Q+++F + + +++A +++ G+ +H + Q RNR + R G + LV TD
Sbjct: 333 QINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 392
Query: 328 VAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERF 387
+ RGID+ A+ V N+D PK E Y+HRIGR+GR G G A++L+ + +R N+K IE
Sbjct: 393 LFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQ 452
Query: 388 TKQQI-PI 394
+I PI
Sbjct: 453 LGTEIKPI 460
Score = 138 (53.6 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 24/71 (33%), Positives = 46/71 (64%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F+ L +L + ++G+ KP+ +QE++IP A+SGRD++ ++ G+GK+ A+++P L +
Sbjct: 98 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157
Query: 63 FASSKNKIPVM 73
K+ I M
Sbjct: 158 LDLKKDNIQAM 168
>UNIPROTKB|F1SAJ5 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:FP089499
RefSeq:XP_003129962.1 RefSeq:XP_003357372.1 UniGene:Ssc.97711
Ensembl:ENSSSCT00000016463 GeneID:100515499 KEGG:ssc:100515499
Uniprot:F1SAJ5
Length = 483
Score = 460 (167.0 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 102/308 (33%), Positives = 168/308 (54%)
Query: 89 ERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRN 148
ERL K + +V+ PTRELALQV+ + +M K ++ GG + L
Sbjct: 156 ERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDT 215
Query: 149 PEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTML 208
+++ATPGR++D + G H+Q++VLDEAD++L F+ +E I+ P RQ +L
Sbjct: 216 VHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILL 275
Query: 209 FSATLDGIVGNMAENITKDPLILKVNSIEKKQ-KNITQSILFVDDILHKNRLLDYLLRDK 267
+SAT V + + P ++N +E+ K +TQ +V + K L+ L
Sbjct: 276 YSATFPLSVQKFMNSHLQKPY--EINLMEELTLKGVTQYYAYVTE-RQKVHCLNTLFSRL 332
Query: 268 RVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATD 327
++ Q+++F + + +++A +++ G+ +H + Q RNR + R G + LV TD
Sbjct: 333 QINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 392
Query: 328 VAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERF 387
+ RGID+ A+ V N+D PK E Y+HRIGR+GR G G A++L+ + +R N+K IE
Sbjct: 393 LFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQ 452
Query: 388 TKQQI-PI 394
+I PI
Sbjct: 453 LGTEIKPI 460
Score = 138 (53.6 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 24/71 (33%), Positives = 46/71 (64%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F+ L +L + ++G+ KP+ +QE++IP A+SGRD++ ++ G+GK+ A+++P L +
Sbjct: 98 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157
Query: 63 FASSKNKIPVM 73
K+ I M
Sbjct: 158 LDLKKDNIQAM 168
>MGI|MGI:104976 [details] [associations]
symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 6"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISO] [GO:0016442 "RNA-induced silencing complex"
evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:104976 GO:GO:0005524
GO:GO:0003723 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 KO:K12614 OMA:YSHARMK InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG106685 OrthoDB:EOG4J1182 CTD:1656
EMBL:D50494 EMBL:AK054144 EMBL:AK148483 EMBL:BC021452 EMBL:AF038995
IPI:IPI00109932 RefSeq:NP_001104296.1 RefSeq:NP_031867.1
RefSeq:NP_851841.2 UniGene:Mm.267061 ProteinModelPortal:P54823
SMR:P54823 IntAct:P54823 STRING:P54823 PhosphoSite:P54823
PaxDb:P54823 PRIDE:P54823 Ensembl:ENSMUST00000170489 GeneID:13209
KEGG:mmu:13209 UCSC:uc009pdy.2 InParanoid:P54823 NextBio:283376
Bgee:P54823 CleanEx:MM_DDX6 Genevestigator:P54823
GermOnline:ENSMUSG00000032097 Uniprot:P54823
Length = 483
Score = 460 (167.0 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 102/308 (33%), Positives = 168/308 (54%)
Query: 89 ERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRN 148
ERL K + +V+ PTRELALQV+ + +M K ++ GG + L
Sbjct: 156 ERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDT 215
Query: 149 PEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTML 208
+++ATPGR++D + G H+Q++VLDEAD++L F+ +E I+ P RQ +L
Sbjct: 216 VHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILL 275
Query: 209 FSATLDGIVGNMAENITKDPLILKVNSIEKKQ-KNITQSILFVDDILHKNRLLDYLLRDK 267
+SAT V + + P ++N +E+ K +TQ +V + K L+ L
Sbjct: 276 YSATFPLSVQKFMNSHLQKPY--EINLMEELTLKGVTQYYAYVTE-RQKVHCLNTLFSRL 332
Query: 268 RVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATD 327
++ Q+++F + + +++A +++ G+ +H + Q RNR + R G + LV TD
Sbjct: 333 QINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 392
Query: 328 VAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERF 387
+ RGID+ A+ V N+D PK E Y+HRIGR+GR G G A++L+ + +R N+K IE
Sbjct: 393 LFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQ 452
Query: 388 TKQQI-PI 394
+I PI
Sbjct: 453 LGTEIKPI 460
Score = 138 (53.6 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 24/71 (33%), Positives = 46/71 (64%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F+ L +L + ++G+ KP+ +QE++IP A+SGRD++ ++ G+GK+ A+++P L +
Sbjct: 98 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157
Query: 63 FASSKNKIPVM 73
K+ I M
Sbjct: 158 LDLKKDNIQAM 168
>RGD|1564560 [details] [associations]
symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box helicase 6"
species:10116 "Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA;ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA;ISO] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA;ISO] [GO:0033962 "cytoplasmic mRNA processing
body assembly" evidence=IEA;ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1564560
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CH473975 GO:GO:0008026
GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4J1182 CTD:1656
IPI:IPI00558056 RefSeq:NP_001102762.1 UniGene:Rn.231713
Ensembl:ENSRNOT00000017391 GeneID:500988 KEGG:rno:500988
UCSC:RGD:1564560 NextBio:707903 Uniprot:D3ZD73
Length = 483
Score = 460 (167.0 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 102/308 (33%), Positives = 168/308 (54%)
Query: 89 ERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRN 148
ERL K + +V+ PTRELALQV+ + +M K ++ GG + L
Sbjct: 156 ERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDT 215
Query: 149 PEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTML 208
+++ATPGR++D + G H+Q++VLDEAD++L F+ +E I+ P RQ +L
Sbjct: 216 VHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILL 275
Query: 209 FSATLDGIVGNMAENITKDPLILKVNSIEKKQ-KNITQSILFVDDILHKNRLLDYLLRDK 267
+SAT V + + P ++N +E+ K +TQ +V + K L+ L
Sbjct: 276 YSATFPLSVQKFMNSHLQKPY--EINLMEELTLKGVTQYYAYVTE-RQKVHCLNTLFSRL 332
Query: 268 RVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATD 327
++ Q+++F + + +++A +++ G+ +H + Q RNR + R G + LV TD
Sbjct: 333 QINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 392
Query: 328 VAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERF 387
+ RGID+ A+ V N+D PK E Y+HRIGR+GR G G A++L+ + +R N+K IE
Sbjct: 393 LFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQ 452
Query: 388 TKQQI-PI 394
+I PI
Sbjct: 453 LGTEIKPI 460
Score = 138 (53.6 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 24/71 (33%), Positives = 46/71 (64%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F+ L +L + ++G+ KP+ +QE++IP A+SGRD++ ++ G+GK+ A+++P L +
Sbjct: 98 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157
Query: 63 FASSKNKIPVM 73
K+ I M
Sbjct: 158 LDLKKDNIQAM 168
>MGI|MGI:2136689 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2136689 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 HOVERGEN:HBG100512 CTD:54555
OrthoDB:EOG4C87SC EMBL:BC099554 IPI:IPI00354271
RefSeq:NP_001020093.2 UniGene:Mm.388127 UniGene:Mm.440659
ProteinModelPortal:Q4FZF3 SMR:Q4FZF3 PhosphoSite:Q4FZF3
PRIDE:Q4FZF3 Ensembl:ENSMUST00000008004 GeneID:234374
KEGG:mmu:234374 UCSC:uc009lzu.1 InParanoid:Q4FZF3 NextBio:382139
Bgee:Q4FZF3 CleanEx:MM_DDX49 Genevestigator:Q4FZF3
GermOnline:ENSMUSG00000057788 Uniprot:Q4FZF3
Length = 480
Score = 464 (168.4 bits), Expect = 2.9e-56, Sum P(2) = 2.9e-56
Identities = 113/309 (36%), Positives = 167/309 (54%)
Query: 101 LVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160
LVLTPTRELA Q+ G + +K I+GGM + Q LSR P +++ATPGRL
Sbjct: 74 LVLTPTRELAYQIAEQFRVLGKPLG-LKDCIIVGGMDMVAQALELSRKPHVVIATPGRLA 132
Query: 161 DHMNSGK-INFSHLQILVLDEADRMLDMG---FINDIEKIVDATPVTRQTMLFSATLDGI 216
DH+ S N +Q LV+DEADR+L+ G F D+E I+ A P RQT+LFSATL
Sbjct: 133 DHLRSSNTFNMKKIQFLVMDEADRLLEQGCTDFTTDLETILAAVPARRQTLLFSATLTDT 192
Query: 217 VGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLR---DKRVG-QA 272
+ + T +P + + + + + Q L V + + K+ L +L++ D+
Sbjct: 193 LKELQGLATNEPFFWEAQATVRTVEQLDQRYLLVPEKV-KDAYLVHLVQTFQDQLEDCSI 251
Query: 273 VVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARG 332
++FT T + I+ L F LH + Q R L + +IL+ATDVA+RG
Sbjct: 252 IIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVASRG 311
Query: 333 IDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQI 392
+D+P + V N++ P P+ Y+HR+GRT RAGR G A++LV + + IE KQQ+
Sbjct: 312 LDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLLHAIEEQIKQQL 371
Query: 393 PIEVINGFE 401
V+ E
Sbjct: 372 AELVVEEAE 380
Score = 133 (51.9 bits), Expect = 2.9e-56, Sum P(2) = 2.9e-56
Identities = 28/62 (45%), Positives = 40/62 (64%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F IGL +++ ++G +PT VQ IPA + GRD + ++TGSGKTAAF+LP L K
Sbjct: 4 FAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 63 FA 64
+
Sbjct: 64 LS 65
>UNIPROTKB|E1BGI6 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030331 "estrogen receptor binding" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0003714 "transcription corepressor activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0003723 GO:GO:0006396 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:DAAA02045421
IPI:IPI00690851 Ensembl:ENSBTAT00000029525 Uniprot:E1BGI6
Length = 877
Score = 452 (164.2 bits), Expect = 3.0e-56, Sum P(3) = 3.0e-56
Identities = 106/289 (36%), Positives = 161/289 (55%)
Query: 89 ERLRFKPAQP--RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLS 146
ERL+ AQ R L+L+PTRELALQ T+ G + +K ILGG Q L
Sbjct: 156 ERLKTHSAQTGARALILSPTRELALQTMKFTKELGKFTG-LKTALILGGDKMEDQFAALH 214
Query: 147 RNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQT 206
NP+I++ATPGRL+ + ++ +V DEADR+ +MGF +++I+ P QT
Sbjct: 215 ENPDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQT 274
Query: 207 MLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRD 266
+LFSATL ++ A +P++++++ K + + S V + K +L +LLR+
Sbjct: 275 VLFSATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSFFLVREDA-KAAVLLHLLRN 333
Query: 267 --KRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILV 324
+ Q VVF ATK A+ +++ L G A ++ L Q AR L G+ L+
Sbjct: 334 VVRPQDQTVVFVATKHHAEYLSELLATQGVSCAHIYSALDQTARKINLARFTHGKCSALI 393
Query: 325 ATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLV 373
TD+AARG+D+P + +V NY P + ++HR+GR RAGR+G A SLV
Sbjct: 394 VTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLV 442
Score = 143 (55.4 bits), Expect = 3.0e-56, Sum P(3) = 3.0e-56
Identities = 25/60 (41%), Positives = 40/60 (66%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F+S+GL V K ++K GY PT +Q + IP + G+D++ ++TGSGKTA F++P +
Sbjct: 98 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPMILDGKDVVAMARTGSGKTACFLIPMFER 157
Score = 39 (18.8 bits), Expect = 3.0e-56, Sum P(3) = 3.0e-56
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 398 NGFEPKKRIRTYYSRY 413
+G E KK+I+T RY
Sbjct: 738 SGQEDKKKIKTESGRY 753
>UNIPROTKB|Q4K4K3 [details] [associations]
symbol:dbpA "ATP-independent RNA helicase DbpA"
species:220664 "Pseudomonas protegens Pf-5" [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 OMA:THEKSTI RefSeq:YP_262830.1
ProteinModelPortal:Q4K4K3 STRING:Q4K4K3 GeneID:3480144
KEGG:pfl:PFL_5772 PATRIC:19881049
BioCyc:PFLU220664:GIX8-5812-MONOMER Uniprot:Q4K4K3
Length = 461
Score = 479 (173.7 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
Identities = 113/291 (38%), Positives = 155/291 (53%)
Query: 101 LVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160
LV+ PTRELA QV R IK +++ GG+ + Q+ L I++ TPGR+
Sbjct: 78 LVICPTRELADQVAKEVRRLARAEDNIKVLTLCGGVSFGPQIASLEHGAHIIVGTPGRIQ 137
Query: 161 DHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNM 220
H+ G + L LVLDEADRMLDMGF + IE I++ TP RQT+LFSAT + +
Sbjct: 138 QHLRKGSLVLDGLNTLVLDEADRMLDMGFYDAIEDIIEKTPSRRQTLLFSATYPVGIKQL 197
Query: 221 AENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRL--LDYLLRDKRVGQAVVFTAT 278
A +DP +K + + I Q +I + R+ + +L R V F T
Sbjct: 198 ASKFMRDPQTVKAEAFHDDTQ-IEQRFY---EISPEERMSAVTKVLHHFRPASCVAFCFT 253
Query: 279 KRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAI 338
K+ D L G A LHGDL Q R++ L +LVATDVAARG+D+ A+
Sbjct: 254 KQQVQETVDHLTAKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDIDAL 313
Query: 339 THVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTK 389
V N +L + E ++HR+GRTGRAG G AVSLV +E + IE+ K
Sbjct: 314 DMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSEAHRAQAIEQLQK 364
Score = 117 (46.2 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F ++ L +L L +GY + T +Q Q++P + G DLI ++TGSGKTAAF + L+
Sbjct: 8 FNTLPLSPAMLANLDSLGYAQMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLN 66
>DICTYBASE|DDB_G0281925 [details] [associations]
symbol:DDB_G0281925 "DEAD/DEAH box helicase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0281925 GO:GO:0005524 GO:GO:0003676
EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 RefSeq:XP_640502.1
ProteinModelPortal:Q54T87 PRIDE:Q54T87 EnsemblProtists:DDB0304645
GeneID:8623317 KEGG:ddi:DDB_G0281925 InParanoid:Q54T87 OMA:SWGNRDN
Uniprot:Q54T87
Length = 586
Score = 478 (173.3 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
Identities = 124/309 (40%), Positives = 173/309 (55%)
Query: 96 AQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLAT 155
A P +LV+ PTRELA Q+ + + I+ + GG+ + Q ++L +I++ T
Sbjct: 183 ATPLVLVMAPTRELAQQIEEVCKT-SIRGTSIRQLCAYGGLGKIDQSRILRNGVDIVIGT 241
Query: 156 PGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDG 215
PGRL D + K + S +Q LVLDEADRMLDMGF+ IE ++D P RQT++FSAT
Sbjct: 242 PGRLNDLLR--KHHLSSVQYLVLDEADRMLDMGFMPQIESLIDQIPKERQTLMFSATWPK 299
Query: 216 IVGNMAENITKDPLILKVNSIEKKQK-NITQSILFVDDI--LHKNRLL----DYLLRDKR 268
V +A KDP+ + V S E N+TQ I+ +DD+ L + L+ + +L
Sbjct: 300 EVKLLASKFLKDPIKITVGSQELTGSINVTQHIVNIDDLSDLQSDDLIYDEINKILTADP 359
Query: 269 VGQAVVFTATKRDADIIADRLNIS-GFLAAPLHGDLHQNARNRTLENLRRGRIKILVATD 327
+VF K D L+ + LH Q R L+ R RI+IL+ATD
Sbjct: 360 TNTVIVFCNEKYKCDDFQHYLSTQKNVKSIVLHSGKDQRMRESGLKLFRDHRIRILIATD 419
Query: 328 VAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIK---KI 384
VAARG+D+P++ VFNY LP EDYVHRIGRTGRAG+ G A S V + N++ KI
Sbjct: 420 VAARGLDIPSVKAVFNYRLPGNIEDYVHRIGRTGRAGKTGDAWSYVT-TQTPNLRDLVKI 478
Query: 385 ERFTKQQIP 393
+ T Q+IP
Sbjct: 479 LQRTNQKIP 487
Score = 118 (46.6 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
Identities = 24/46 (52%), Positives = 31/46 (67%)
Query: 20 GYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFAS 65
G+T PT +Q Q+ P + G DL+ + TGSGKT AF+LPAL K S
Sbjct: 129 GFTAPTVIQGQSWPIILGGNDLVGLAATGSGKTLAFLLPALLKIIS 174
Score = 49 (22.3 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 35/137 (25%), Positives = 52/137 (37%)
Query: 240 QKNITQSILFV--DDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
QKN+ +L D + ++ L L RD R+ + R DI + + + L
Sbjct: 383 QKNVKSIVLHSGKDQRMRESGLK--LFRDHRIRILIATDVAARGLDIPSVKAVFNYRLPG 440
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDY-VH- 355
+ +H+ R T + G V T D+ I N +P F E + VH
Sbjct: 441 NIEDYVHRIGR--TGRAGKTGDAWSYVTTQTPNLR-DLVKILQRTNQKIPDFLEKFAVHS 497
Query: 356 -----RIGRTGRAGRNG 367
R G GR GR G
Sbjct: 498 RQGISRYGGGGRGGRGG 514
>ZFIN|ZDB-GENE-050208-665 [details] [associations]
symbol:ddx59 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 59" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-050208-665 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:BX649292
IPI:IPI00786758 Ensembl:ENSDART00000105600 Bgee:F1R8P9
Uniprot:F1R8P9
Length = 584
Score = 463 (168.0 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
Identities = 96/310 (30%), Positives = 177/310 (57%)
Query: 95 PAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLA 154
P+ P L+LTPTRELA+Q+ + + ++ ++GGMP Q+ L N +I++
Sbjct: 240 PSCPACLILTPTRELAIQIEEQAKELMRGLPNMRTALLVGGMPLPPQLHRLKHNIKIVIG 299
Query: 155 TPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLD 214
TPGRL++ + + H++ +V+DEAD ML MGF + I++ P QT+L SAT+
Sbjct: 300 TPGRLLEILKQKAVQLDHVRTVVVDEADTMLKMGFQQQVLDILEQVPEDHQTLLTSATIP 359
Query: 215 GIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQ--A 272
+AE +T DP+ + + + N+ Q +L+V++ K +L + +L D+++ Q
Sbjct: 360 TGTQQLAERLTHDPVTITIGQKNQPCANVRQIVLWVEEPSKKKKLFE-ILNDEKLYQPPV 418
Query: 273 VVFTATKRDADIIADRLN-ISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAAR 331
VVF K AD++ + + + +H D Q RN+ ++ L G+ ++++T + R
Sbjct: 419 VVFVDCKLGADLLCEAVQKVMSLNTVAIHSDKMQWERNKIVKGLLEGQFDVVISTGILGR 478
Query: 332 GIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHA-ERMNIKKIERF--T 388
G+D+ + V N+D+P ++YVH+IGR GR G G A++ +N+ +R+ ++ ++R T
Sbjct: 479 GLDLVNVKLVINFDMPSNMDEYVHQIGRAGRLGHRGTAITFMNNNNKRLFLEMVKRVKPT 538
Query: 389 KQQIPIEVIN 398
+P +++N
Sbjct: 539 GSILPPQILN 548
Score = 133 (51.9 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
Identities = 27/61 (44%), Positives = 40/61 (65%)
Query: 12 VLKALVKV-GYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKI 70
VL+ +K GY PT VQ Q +P ++GRD+I ++ TGSGKT AF+LP + + S++
Sbjct: 180 VLERNLKAAGYEAPTPVQMQMVPVGLTGRDVIATADTGSGKTVAFLLPVVMRALQSESAS 239
Query: 71 P 71
P
Sbjct: 240 P 240
>UNIPROTKB|Q3MSQ8 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:45623 "Pelophylax lessonae" [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0030154 GO:GO:0048477 GO:GO:0007283 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071546
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AJ841700
ProteinModelPortal:Q3MSQ8 SMR:Q3MSQ8 Uniprot:Q3MSQ8
Length = 724
Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
Identities = 137/376 (36%), Positives = 213/376 (56%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F+ L + + K + K GY K T +Q+ +IP ++GRDL+ +QTGSGKTAAF+LP L
Sbjct: 286 LTFEEANLCDSLAKNVCKSGYVKLTPIQKHSIPIIVAGRDLMACAQTGSGKTAAFLLPIL 345
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+M K + ++ T KE P +++ PTREL Q+ ++
Sbjct: 346 AH---------LMVKGVE--SSAFQTLKE--------PEAIIVAPTRELINQIYLDARKF 386
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y ++ + I GG ++ +S IL ATPGRL+D + KI + L+ LVLDE
Sbjct: 387 S-YGTCVRPVVIYGGTQMFHSLKQISEGCNILCATPGRLLDVIRKEKIGLTKLRYLVLDE 445
Query: 181 ADRMLDMGFINDIEKIVDATPVT----RQTMLFSATLDGIVGNMAENITK-DPLILKVNS 235
ADRMLDMGF DIE ++ ++ + RQT++FSAT + ++A I K D L + V
Sbjct: 446 ADRMLDMGFREDIENLLKSSGMPSKEERQTLMFSATFPSSIQSLAREILKPDYLFVVVGQ 505
Query: 236 IEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFL 295
+ ++ Q ++ VD+ K++L++ +L++ + +VF TK+ AD IA L
Sbjct: 506 VGGACSDVEQMVIEVDEFGKKDKLME-ILQEIGSERTMVFVKTKKKADFIATFLCQEKVP 564
Query: 296 AAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVH 355
+ +HGD Q R L + R G+ ++VAT VAARG+D+ +++V N+D+P ++YVH
Sbjct: 565 STSIHGDREQKERETALRDFRTGQCPVIVATSVAARGLDIENVSYVINFDIPDDIDEYVH 624
Query: 356 RIGRTGRAGRNGFAVS 371
RIGRTGR G G A+S
Sbjct: 625 RIGRTGRCGNTGRAIS 640
>UNIPROTKB|Q91372 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:8355 "Xenopus laevis" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
"nuclear envelope" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS] [GO:0032019
"mitochondrial cloud" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005635 GO:GO:0048477 GO:GO:0007283
GO:GO:0003676 GO:GO:0007281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 HOVERGEN:HBG015893 CTD:54514 KO:K13982
GO:GO:0071547 EMBL:AF046043 PIR:I51235 RefSeq:NP_001081728.1
UniGene:Xl.256 ProteinModelPortal:Q91372 SMR:Q91372 GeneID:398019
KEGG:xla:398019 Xenbase:XB-GENE-1016814 Uniprot:Q91372
Length = 700
Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
Identities = 145/422 (34%), Positives = 229/422 (54%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F+ L E + + + + GY K T VQ+ +IP ++GRDL+ +QTGSGKTAAF+LP
Sbjct: 274 LTFEEANLCETLRRNVARAGYVKLTPVQKHSIPIIMAGRDLMACAQTGSGKTAAFLLP-- 331
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
++ +N+ T + L+ + +P +++ PTREL Q+ ++
Sbjct: 332 -----------ILSYMMNEG----ITASQYLQLQ--EPEAIIIAPTRELINQIYLDARKF 374
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y ++ + + GG+ + M+ + + IL ATPGRL+D ++ KI S L+ LVLDE
Sbjct: 375 S-YGTCVRPVVVYGGIQPVHAMRDVEKGCNILCATPGRLLDIVSKEKIGLSKLRYLVLDE 433
Query: 181 ADRMLDMGFINDIEKIVDA----TPVTRQTMLFSATLDGIVGNMAENITK-DPLILKVNS 235
ADRMLDMGF +IEK++ T RQT++FSAT + +A N K + L + V
Sbjct: 434 ADRMLDMGFAPEIEKLMTKPGMPTKEKRQTLMFSATYPEEIRRLASNYLKSEHLFVVVGL 493
Query: 236 IEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFL 295
+ ++ Q++L + + +LL+ +L+ + ++F TK+ AD IA L F
Sbjct: 494 VGGACSDVAQTVLEMRENGKMEKLLE-ILKSSEKERTMIFVNTKKKADFIAGYLCQEKFS 552
Query: 296 AAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVH 355
+ +HGD Q R L + R G+ ++V T VAARG+D+ + HV NYD+PK ++YVH
Sbjct: 553 STSIHGDREQYQRESALWDFRTGKCTVIVCTAVAARGLDIENVQHVINYDVPKEVDEYVH 612
Query: 356 RIGRTGRAGRNGFAVSLVN----HAERMNIKKIERFTKQQIP--IEVINGFEPKKRIRTY 409
RIGRTGR G G A S N H + KI Q++P +E I F + ++
Sbjct: 613 RIGRTGRCGNTGKATSFFNVQDDHVIARPLVKILTDAHQEVPAWLEEI-AFGGHGALNSF 671
Query: 410 YS 411
Y+
Sbjct: 672 YA 673
>WB|WBGene00018776 [details] [associations]
symbol:F53H1.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 GO:GO:0040018 GO:GO:0003676
GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 GeneTree:ENSGT00610000086076 KO:K12811
HOGENOM:HOG000007229 OMA:IEEENKF EMBL:FO081458
RefSeq:NP_001033411.1 ProteinModelPortal:Q965K2 SMR:Q965K2
PaxDb:Q965K2 PRIDE:Q965K2 EnsemblMetazoa:F53H1.1 GeneID:176943
KEGG:cel:CELE_F53H1.1 UCSC:F53H1.1 CTD:176943 WormBase:F53H1.1
InParanoid:Q965K2 NextBio:894678 ArrayExpress:Q965K2 Uniprot:Q965K2
Length = 970
Score = 474 (171.9 bits), Expect = 5.7e-56, Sum P(2) = 5.7e-56
Identities = 114/288 (39%), Positives = 165/288 (57%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P ++L PTRELA+Q ++ + +K GG+ Q+ L R EI++ TPG
Sbjct: 378 PIAVILAPTRELAMQTYKEANKFAKPLG-LKVACTYGGVGISEQIADLKRGAEIVVCTPG 436
Query: 158 RLIDHM--NSGKI-NFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLD 214
R+ID + NSGK+ N + LVLDEADRM D GF I K+V+ +QT+LFSAT
Sbjct: 437 RMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRPDKQTVLFSATFP 496
Query: 215 GIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVV 274
+ +A + P+ + V +ITQ+ + + +LL+ L G ++V
Sbjct: 497 RHMEALARKVLDKPVEILVGGKSVVCSDITQNAVICAEHQKFLKLLELLGMYYEEGSSIV 556
Query: 275 FTATKRDADIIADRLNISGFLA-APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGI 333
F + AD I D+L +G+ + APLHG + Q+ R+ ++ + + G IK+LVAT VAARG+
Sbjct: 557 FVDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSVAARGL 616
Query: 334 DVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLV--NHAERM 379
DV + V NYD P EDYVHR+GRTGRAGR G+A + V H E+M
Sbjct: 617 DVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPEHQEKM 664
Score = 139 (54.0 bits), Expect = 5.7e-56, Sum P(2) = 5.7e-56
Identities = 27/52 (51%), Positives = 39/52 (75%)
Query: 7 GLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLP 58
G++ ++ L K Y+KPT +Q QAIP+ +SGRD+I ++TGSGKT AF+LP
Sbjct: 310 GVNLKMMNVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLP 361
Score = 40 (19.1 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVP 336
D Q R + G + L ++ RG+ VP
Sbjct: 879 DFPQQVRYKICSRESVGHVAELAEVGISVRGVHVP 913
>UNIPROTKB|E1BJD2 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:DAAA02049325 IPI:IPI00701280
Ensembl:ENSBTAT00000028046 Uniprot:E1BJD2
Length = 946
Score = 470 (170.5 bits), Expect = 6.4e-56, Sum P(2) = 6.4e-56
Identities = 103/280 (36%), Positives = 158/280 (56%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P +++ PTREL Q+ A +R+G ++++++ GG Q + L EI++ TPG
Sbjct: 327 PIAVIVCPTRELCQQIHAECKRFGKAYN-LRSVAVYGGGSMWEQAKALQEGAEIVVCTPG 385
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLIDH+ N + LV DEADRM DMGF + I RQT+LFSAT +
Sbjct: 386 RLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKI 445
Query: 218 GNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRD----KRVGQAV 273
+A +I DP+ + I + +++TQ + +ILH ++L R G +
Sbjct: 446 EKLARDILIDPIRVVQGDIGEANEDVTQIV----EILHSGSKWNWLTRRLVEFTSSGSVL 501
Query: 274 VFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGI 333
+F K +A+ +A+ L G LHGD+ Q+ RN+ + + ++ I +LVATDVAARG+
Sbjct: 502 LFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGL 561
Query: 334 DVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLV 373
D+P+I V NYD+ + + + HRIGRTGRAG G A +L+
Sbjct: 562 DIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 601
Score = 142 (55.0 bits), Expect = 6.4e-56, Sum P(2) = 6.4e-56
Identities = 30/70 (42%), Positives = 42/70 (60%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F G E ++ + K YT+PT +Q Q +P A+SGRD+I ++TGSGKTAAF+ P L
Sbjct: 254 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 313
Query: 62 KFASSKNKIP 71
K P
Sbjct: 314 HIMDQKELEP 323
Score = 50 (22.7 bits), Expect = 3.1e-46, Sum P(2) = 3.1e-46
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 20 GYTKPTGVQEQA-IPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSK 67
G+ G +E+ +P SS +G GK+A LP+ +K S +
Sbjct: 18 GFAISAGKKEEPKLPQQSHSAFGAASSASGFGKSAPPQLPSFYKIGSKR 66
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 142/374 (37%), Positives = 206/374 (55%)
Query: 40 DLIVSS--QTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ 97
D++V + Q G K A+ ++ I + + + + E+LR Q
Sbjct: 10 DVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKLRQGQTQ 69
Query: 98 P----RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILL 153
R L+L PTRELA+QV E+YG +K++++ GG+ Q Q L ++L+
Sbjct: 70 RKKRVRALILVPTRELAMQVAEKVEQYGKDTG-LKSLAVFGGVDEQAQKQRLIDGVDVLV 128
Query: 154 ATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATL 213
ATPGRL+D + F ++++VLDEADRMLDMGFI I KI+D P Q +LFSATL
Sbjct: 129 ATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFSATL 188
Query: 214 DGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAV 273
V +A+ +DP + + + + + NI+Q ++ VD K+ LL +L+ +++ QA+
Sbjct: 189 SRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDT-KSALLSHLINEQQWDQAL 247
Query: 274 VFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGI 333
+F TK A + +L G A H Q R + LE+ + G+IK LVAT VAARGI
Sbjct: 248 IFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAARGI 307
Query: 334 DVPAITHVFNYDLPKFPED-YVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQI 392
D+ ++ V NYDLP FP D YVHRIGRTGRA G A+S V+ N+ IE I
Sbjct: 308 DIDQLSRVVNYDLP-FPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIESRLGHLI 366
Query: 393 PIEVINGFEPKKRI 406
V+ GFEPKK +
Sbjct: 367 ERRVVEGFEPKKPV 380
Score = 179 (68.1 bits), Expect = 7.2e-11, P = 7.2e-11
Identities = 31/69 (44%), Positives = 50/69 (72%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL +++++ + ++GY KPT +Q QAIP + GRDLI ++QTG+GKTA+F+LP L
Sbjct: 1 MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
Query: 61 HKFASSKNK 69
K + +
Sbjct: 61 EKLRQGQTQ 69
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 142/374 (37%), Positives = 206/374 (55%)
Query: 40 DLIVSS--QTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ 97
D++V + Q G K A+ ++ I + + + + E+LR Q
Sbjct: 10 DVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKLRQGQTQ 69
Query: 98 P----RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILL 153
R L+L PTRELA+QV E+YG +K++++ GG+ Q Q L ++L+
Sbjct: 70 RKKRVRALILVPTRELAMQVAEKVEQYGKDTG-LKSLAVFGGVDEQAQKQRLIDGVDVLV 128
Query: 154 ATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATL 213
ATPGRL+D + F ++++VLDEADRMLDMGFI I KI+D P Q +LFSATL
Sbjct: 129 ATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFSATL 188
Query: 214 DGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAV 273
V +A+ +DP + + + + + NI+Q ++ VD K+ LL +L+ +++ QA+
Sbjct: 189 SRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDT-KSALLSHLINEQQWDQAL 247
Query: 274 VFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGI 333
+F TK A + +L G A H Q R + LE+ + G+IK LVAT VAARGI
Sbjct: 248 IFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAARGI 307
Query: 334 DVPAITHVFNYDLPKFPED-YVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQI 392
D+ ++ V NYDLP FP D YVHRIGRTGRA G A+S V+ N+ IE I
Sbjct: 308 DIDQLSRVVNYDLP-FPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIESRLGHLI 366
Query: 393 PIEVINGFEPKKRI 406
V+ GFEPKK +
Sbjct: 367 ERRVVEGFEPKKPV 380
Score = 179 (68.1 bits), Expect = 7.2e-11, P = 7.2e-11
Identities = 31/69 (44%), Positives = 50/69 (72%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL +++++ + ++GY KPT +Q QAIP + GRDLI ++QTG+GKTA+F+LP L
Sbjct: 1 MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
Query: 61 HKFASSKNK 69
K + +
Sbjct: 61 EKLRQGQTQ 69
>UNIPROTKB|E1C8R1 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063986 KO:K12614 InterPro:IPR014014
PROSITE:PS51195 UniGene:Gga.2331 CTD:1656 EMBL:AADN02058042
EMBL:AADN02058043 IPI:IPI00818395 RefSeq:NP_001006319.2
PRIDE:E1C8R1 Ensembl:ENSGALT00000040594 GeneID:419783
KEGG:gga:419783 NextBio:20822787 ArrayExpress:E1C8R1 Uniprot:E1C8R1
Length = 483
Score = 455 (165.2 bits), Expect = 7.8e-56, Sum P(2) = 7.8e-56
Identities = 101/308 (32%), Positives = 168/308 (54%)
Query: 89 ERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRN 148
ERL K + +V+ PTRELALQV+ + +M K ++ GG + L
Sbjct: 156 ERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDT 215
Query: 149 PEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTML 208
+++ATPGR++D + G H+Q++VLDEA+++L F+ +E I+ P RQ +L
Sbjct: 216 VHVVIATPGRILDLIKKGVAKVEHVQMIVLDEANKLLSQDFVQIMEDIILTLPKNRQILL 275
Query: 209 FSATLDGIVGNMAENITKDPLILKVNSIEKKQ-KNITQSILFVDDILHKNRLLDYLLRDK 267
+SAT V + + P ++N +E+ K +TQ +V + K L+ L
Sbjct: 276 YSATFPLSVQKFMNSHLQKPY--EINLMEELTLKGVTQYYAYVTE-RQKVHCLNTLFSRL 332
Query: 268 RVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATD 327
++ Q+++F + + +++A +++ G+ +H + Q RNR + R G + LV TD
Sbjct: 333 QINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 392
Query: 328 VAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERF 387
+ RGID+ A+ V N+D PK E Y+HRIGR+GR G G A++L+ + +R N+K IE
Sbjct: 393 LFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQ 452
Query: 388 TKQQI-PI 394
+I PI
Sbjct: 453 LGTEIKPI 460
Score = 138 (53.6 bits), Expect = 7.8e-56, Sum P(2) = 7.8e-56
Identities = 24/71 (33%), Positives = 46/71 (64%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F+ L +L + ++G+ KP+ +QE++IP A+SGRD++ ++ G+GK+ A+++P L +
Sbjct: 98 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157
Query: 63 FASSKNKIPVM 73
K+ I M
Sbjct: 158 LDLKKDNIQAM 168
>UNIPROTKB|E2RFF1 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AAEX03006359
Ensembl:ENSCAFT00000020366 Uniprot:E2RFF1
Length = 933
Score = 468 (169.8 bits), Expect = 9.8e-56, Sum P(2) = 9.8e-56
Identities = 104/281 (37%), Positives = 158/281 (56%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P +++ PTREL Q+ A +R+G ++++++ GG Q + L EI++ TPG
Sbjct: 327 PIAVIVCPTRELCQQIHAECKRFGKAYN-LRSVAVYGGGSMWEQAKALQEGAEIVVCTPG 385
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLIDH+ N + LV DEADRM DMGF + I RQT+LFSAT +
Sbjct: 386 RLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKI 445
Query: 218 GNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHK-----NRLLDYLLRDKRVGQA 272
+A +I DP+ + I + +++TQ + +ILH N L L+ G
Sbjct: 446 EKLARDILIDPIRVVQGDIGEANEDVTQIV----EILHSGPSKWNWLTRRLVEFTSSGSV 501
Query: 273 VVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARG 332
++F K +A+ +A+ L G LHGD+ Q+ RN+ + + ++ I +LVATDVAARG
Sbjct: 502 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 561
Query: 333 IDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLV 373
+D+P+I V NYD+ + + + HRIGRTGRAG G A +L+
Sbjct: 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 602
Score = 142 (55.0 bits), Expect = 9.8e-56, Sum P(2) = 9.8e-56
Identities = 30/70 (42%), Positives = 42/70 (60%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F G E ++ + K YT+PT +Q Q +P A+SGRD+I ++TGSGKTAAF+ P L
Sbjct: 254 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 313
Query: 62 KFASSKNKIP 71
K P
Sbjct: 314 HIMDQKELEP 323
Score = 51 (23.0 bits), Expect = 3.6e-46, Sum P(2) = 3.6e-46
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 20 GYTKPTGVQEQA-IPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSK 67
G+ G +E+ +P SS +G GK+A LP+ +K S +
Sbjct: 18 GFAISAGKKEEPKLPQQSHSAFGATSSSSGFGKSAPPQLPSFYKIGSKR 66
>ASPGD|ASPL0000069536 [details] [associations]
symbol:AN7424 species:162425 "Emericella nidulans"
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268804 KO:K14811 RefSeq:XP_680693.1
GeneID:2869574 KEGG:ani:AN7424.2 OrthoDB:EOG42JS0S Uniprot:Q5AWA6
Length = 488
Score = 479 (173.7 bits), Expect = 9.9e-56, Sum P(2) = 9.9e-56
Identities = 117/331 (35%), Positives = 180/331 (54%)
Query: 94 KPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILL 153
K +P +V++PTRELA+Q+ ++ + I+ I GG+ Q + L ++ +++
Sbjct: 143 KSCRPLAVVISPTRELAMQIYDQLVKFAEKVD-IQVACIFGGVKKDEQREAL-KSAAVVV 200
Query: 154 ATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVT-RQTMLFSAT 212
ATPGRL D N G ++ ++ LVLDEADRMLD GF DI+ I+ PV+ RQT++F+AT
Sbjct: 201 ATPGRLKDLQNDGSLDLGRVKYLVLDEADRMLDKGFEQDIKDIISPMPVSKRQTVMFTAT 260
Query: 213 LDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDIL--HKN--RLLDYLLRDKR 268
IV N+A P+ + + I V +++ H+ RL+ L R +R
Sbjct: 261 WPPIVRNLASTFMTSPVTVTIGGDPSADPRANSRIKQVVEVVKPHEKEQRLVQILNRHQR 320
Query: 269 --VGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVAT 326
+ + F K++A + L GF A +HGDL Q R R+LE + G +LVAT
Sbjct: 321 GTPDKVLAFCLYKKEAMRVERLLRTKGFKVAGIHGDLSQQERFRSLEAFKSGAATVLVAT 380
Query: 327 DVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMN---IKK 383
DVAARG+D+P + V N P EDYVHRIGRTGRAG +G A++L ++ +
Sbjct: 381 DVAARGLDIPHVKLVVNVTFPLTVEDYVHRIGRTGRAGADGHAITLFTETDKAQSGALIN 440
Query: 384 IERFTKQQIPIEVIN-GFEPKKRIRTYYSRY 413
+ + Q++P ++ G KK+ Y +
Sbjct: 441 VLKAANQEVPEALLKFGSTVKKKQHDAYGAF 471
Score = 113 (44.8 bits), Expect = 9.9e-56, Sum P(2) = 9.9e-56
Identities = 23/50 (46%), Positives = 29/50 (58%)
Query: 20 GYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNK 69
G+ PT +Q P +GRD+I ++TGSGKT AF LP L K K K
Sbjct: 92 GFASPTAIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKVLDLKTK 141
>POMBASE|SPBC776.09 [details] [associations]
symbol:ste13 "ATP-dependent RNA helicase Ste13"
species:4896 "Schizosaccharomyces pombe" [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=ISO] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0030996 "cell cycle arrest in response to
nitrogen starvation" evidence=IMP] [GO:0031142 "induction of
conjugation upon nitrogen starvation" evidence=IMP] [GO:0051028
"mRNA transport" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBC776.09
GO:GO:0005524 GO:GO:0006417 EMBL:CU329671 GO:GO:0006397
GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0000932 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0031142 eggNOG:COG0513 HOGENOM:HOG000268797 KO:K12614
OMA:YSHARMK InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000290
OrthoDB:EOG4QJVWF EMBL:D29795 PIR:S46654 RefSeq:NP_596324.1
ProteinModelPortal:Q09181 SMR:Q09181 STRING:Q09181 PRIDE:Q09181
EnsemblFungi:SPBC776.09.1 GeneID:2541216 KEGG:spo:SPBC776.09
NextBio:20802328 GO:GO:0030996 Uniprot:Q09181
Length = 485
Score = 438 (159.2 bits), Expect = 9.9e-56, Sum P(2) = 9.9e-56
Identities = 102/307 (33%), Positives = 163/307 (53%)
Query: 89 ERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRN 148
E++ K ++ + L+L PTRELALQ + + G +M +K + GG + L+
Sbjct: 104 EKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMN-VKVMVTTGGTTLRDDIIRLNDT 162
Query: 149 PEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTML 208
I++ TPGR++D G +FS V+DEAD++L F IE+++ P RQ L
Sbjct: 163 VHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQISL 222
Query: 209 FSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKR 268
+SAT IV N + P + + E + +TQ FVD+ K L+ L +
Sbjct: 223 YSATFPLIVKNFMDKHLNKPYEINLMD-ELTLRGVTQYYAFVDES-QKVHCLNTLFSKLQ 280
Query: 269 VGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDV 328
+ Q+++F + +++A ++ G+ H + Q+ RNR N R G + LV +D+
Sbjct: 281 INQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDL 340
Query: 329 AARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFT 388
RGID+ A+ V N+D PK E Y+HRIGR+GR G G A+S ++ A+R N+ +IE
Sbjct: 341 LTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFISWADRFNLYRIENEL 400
Query: 389 KQQI-PI 394
+I PI
Sbjct: 401 GTEIQPI 407
Score = 154 (59.3 bits), Expect = 9.9e-56, Sum P(2) = 9.9e-56
Identities = 27/71 (38%), Positives = 49/71 (69%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F+ L +L + + G+ +P+ +QE++IP A+SGRD++ ++ G+GKTAAF++P+L K
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 63 FASSKNKIPVM 73
+ K+KI +
Sbjct: 106 VDTKKSKIQTL 116
>UNIPROTKB|Q86XP3 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008104 "protein
localization" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AF083255 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
EMBL:CH471109 GO:GO:0015030 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 CTD:11325 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 EMBL:AB036090 EMBL:AK292908 EMBL:AC015651
EMBL:BC008208 EMBL:BC015505 EMBL:BC078667 EMBL:BC093081
EMBL:AL050096 EMBL:BK000566 IPI:IPI00409671 IPI:IPI00829889
PIR:T08745 RefSeq:NP_031398.2 RefSeq:NP_987095.1 UniGene:Hs.702010
ProteinModelPortal:Q86XP3 SMR:Q86XP3 IntAct:Q86XP3
MINT:MINT-1427725 STRING:Q86XP3 PhosphoSite:Q86XP3 DMDM:74750541
PaxDb:Q86XP3 PRIDE:Q86XP3 Ensembl:ENST00000359353
Ensembl:ENST00000389924 Ensembl:ENST00000457800
Ensembl:ENST00000578681 Ensembl:ENST00000583590 GeneID:11325
KEGG:hsa:11325 UCSC:uc002jbu.3 GeneCards:GC17P061851
HGNC:HGNC:18676 HPA:HPA023447 HPA:HPA023571 HPA:HPA025941
MIM:613369 neXtProt:NX_Q86XP3 PharmGKB:PA134875761
InParanoid:Q86XP3 OMA:QGVNNTA ChiTaRS:DDX42 GenomeRNAi:11325
NextBio:43019 ArrayExpress:Q86XP3 Bgee:Q86XP3 CleanEx:HS_DDX42
Genevestigator:Q86XP3 Uniprot:Q86XP3
Length = 938
Score = 468 (169.8 bits), Expect = 1.0e-55, Sum P(2) = 1.0e-55
Identities = 104/281 (37%), Positives = 158/281 (56%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P +++ PTREL Q+ A +R+G ++++++ GG Q + L EI++ TPG
Sbjct: 327 PIAVIVCPTRELCQQIHAECKRFGKAYN-LRSVAVYGGGSMWEQAKALQEGAEIVVCTPG 385
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLIDH+ N + LV DEADRM DMGF + I RQT+LFSAT +
Sbjct: 386 RLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKI 445
Query: 218 GNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHK-----NRLLDYLLRDKRVGQA 272
+A +I DP+ + I + +++TQ + +ILH N L L+ G
Sbjct: 446 EKLARDILIDPIRVVQGDIGEANEDVTQIV----EILHSGPSKWNWLTRRLVEFTSSGSV 501
Query: 273 VVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARG 332
++F K +A+ +A+ L G LHGD+ Q+ RN+ + + ++ I +LVATDVAARG
Sbjct: 502 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 561
Query: 333 IDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLV 373
+D+P+I V NYD+ + + + HRIGRTGRAG G A +L+
Sbjct: 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 602
Score = 142 (55.0 bits), Expect = 1.0e-55, Sum P(2) = 1.0e-55
Identities = 30/70 (42%), Positives = 42/70 (60%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F G E ++ + K YT+PT +Q Q +P A+SGRD+I ++TGSGKTAAF+ P L
Sbjct: 254 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 313
Query: 62 KFASSKNKIP 71
K P
Sbjct: 314 HIMDQKELEP 323
Score = 51 (23.0 bits), Expect = 3.8e-46, Sum P(2) = 3.8e-46
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 20 GYTKPTGVQEQA-IPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSK 67
G+ G +E+ +P SS +G GK+A LP+ +K S +
Sbjct: 18 GFAISAGKKEEPKLPQQSHSAFGATSSSSGFGKSAPPQLPSFYKIGSKR 66
>UNIPROTKB|F1RSJ7 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:CU466402 EMBL:CU466386
Ensembl:ENSSSCT00000018821 Uniprot:F1RSJ7
Length = 941
Score = 468 (169.8 bits), Expect = 1.0e-55, Sum P(2) = 1.0e-55
Identities = 104/281 (37%), Positives = 158/281 (56%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P +++ PTREL Q+ A +R+G ++++++ GG Q + L EI++ TPG
Sbjct: 327 PIAVIVCPTRELCQQIHAECKRFGKAYN-LRSVAVYGGGSMWEQAKALQEGAEIVVCTPG 385
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLIDH+ N + LV DEADRM DMGF + I RQT+LFSAT +
Sbjct: 386 RLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKI 445
Query: 218 GNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHK-----NRLLDYLLRDKRVGQA 272
+A +I DP+ + I + +++TQ + +ILH N L L+ G
Sbjct: 446 EKLARDILIDPIRVVQGDIGEANEDVTQIV----EILHSGPSKWNWLTRRLVEFTSSGSV 501
Query: 273 VVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARG 332
++F K +A+ +A+ L G LHGD+ Q+ RN+ + + ++ I +LVATDVAARG
Sbjct: 502 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 561
Query: 333 IDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLV 373
+D+P+I V NYD+ + + + HRIGRTGRAG G A +L+
Sbjct: 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 602
Score = 142 (55.0 bits), Expect = 1.0e-55, Sum P(2) = 1.0e-55
Identities = 30/70 (42%), Positives = 42/70 (60%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F G E ++ + K YT+PT +Q Q +P A+SGRD+I ++TGSGKTAAF+ P L
Sbjct: 254 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 313
Query: 62 KFASSKNKIP 71
K P
Sbjct: 314 HIMDQKELEP 323
Score = 55 (24.4 bits), Expect = 1.5e-46, Sum P(2) = 1.5e-46
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 20 GYTKPTGVQEQA-IPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSK 67
G+ G +E+ +P SS +G GKTA LP+ +K S +
Sbjct: 18 GFAISAGKKEEPKLPQQSHSAFGATSSSSGFGKTAPPQLPSFYKIGSKR 66
>UNIPROTKB|F1P0H1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00610000086076 EMBL:AADN02056764
IPI:IPI00819332 Ensembl:ENSGALT00000040437 ArrayExpress:F1P0H1
Uniprot:F1P0H1
Length = 703
Score = 458 (166.3 bits), Expect = 1.1e-55, Sum P(2) = 1.1e-55
Identities = 101/277 (36%), Positives = 154/277 (55%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P +++ PTREL Q+ + +R+G ++++++ GG Q + L EI++ TPG
Sbjct: 322 PIAVIVCPTRELCQQIHSECKRFGKAYN-LRSVAVYGGGSMWEQAKALQEGAEIVVCTPG 380
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLIDH+ N + LV DEADRM DMGF + I RQT+LFSAT +
Sbjct: 381 RLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKI 440
Query: 218 GNMAENITKDPLILKVNSIEKKQKNITQSI-LFVDDILHKNRLLDYLLRDKRVGQAVVFT 276
+A +I DP+ + I + +++TQ + +F N L L+ G ++F
Sbjct: 441 EKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPSGPSKWNWLTRRLVEFTSSGSVLLFV 500
Query: 277 ATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVP 336
K +A+ +A+ L LHGD+ Q+ RN+ + ++ I ILVATDVAARG+D+P
Sbjct: 501 TKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDVAARGLDIP 560
Query: 337 AITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLV 373
+I V NYD+ + + + HRIGRTGRAG G A +L+
Sbjct: 561 SIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 597
Score = 141 (54.7 bits), Expect = 1.1e-55, Sum P(2) = 1.1e-55
Identities = 30/70 (42%), Positives = 42/70 (60%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F G E ++ + K YT+PT +Q Q +P A+SGRD+I ++TGSGKTAAF+ P L
Sbjct: 249 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLI 308
Query: 62 KFASSKNKIP 71
K P
Sbjct: 309 HIMDQKELEP 318
>MGI|MGI:1919297 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919297
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0016607 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AL604045 HSSP:P09052
CTD:11325 HOGENOM:HOG000268793 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 OMA:QGVNNTA ChiTaRS:DDX42 EMBL:AK007805
EMBL:AK049311 EMBL:AK169816 EMBL:AK171730 EMBL:BC043036
IPI:IPI00329839 IPI:IPI00830514 RefSeq:NP_082350.3 UniGene:Mm.41367
ProteinModelPortal:Q810A7 SMR:Q810A7 IntAct:Q810A7 STRING:Q810A7
PhosphoSite:Q810A7 PaxDb:Q810A7 PRIDE:Q810A7
Ensembl:ENSMUST00000021046 GeneID:72047 KEGG:mmu:72047
UCSC:uc007lyk.2 UCSC:uc007lyl.2 GeneTree:ENSGT00610000086076
InParanoid:Q810A7 NextBio:335308 Bgee:Q810A7 CleanEx:MM_DDX42
Genevestigator:Q810A7 Uniprot:Q810A7
Length = 929
Score = 467 (169.5 bits), Expect = 1.2e-55, Sum P(2) = 1.2e-55
Identities = 104/281 (37%), Positives = 157/281 (55%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P +++ PTREL Q+ A +R+G ++++++ GG Q + L EI++ TPG
Sbjct: 327 PIAVIVCPTRELCQQIHAECKRFGKAYN-LRSVAVYGGGSMWEQAKALQEGAEIVVCTPG 385
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLIDH+ N + LV DEADRM DMGF + I RQT+LFSAT +
Sbjct: 386 RLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKI 445
Query: 218 GNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHK-----NRLLDYLLRDKRVGQA 272
+A +I DP+ + I + +++TQ + +ILH N L L+ G
Sbjct: 446 EKLARDILIDPIRVVQGDIGEANEDVTQIV----EILHSGPSKWNWLTRRLVEFTSSGSV 501
Query: 273 VVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARG 332
++F K +A+ +A L G LHGD+ Q+ RN+ + + ++ I +LVATDVAARG
Sbjct: 502 LLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 561
Query: 333 IDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLV 373
+D+P+I V NYD+ + + + HRIGRTGRAG G A +L+
Sbjct: 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 602
Score = 142 (55.0 bits), Expect = 1.2e-55, Sum P(2) = 1.2e-55
Identities = 30/70 (42%), Positives = 42/70 (60%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F G E ++ + K YT+PT +Q Q +P A+SGRD+I ++TGSGKTAAF+ P L
Sbjct: 254 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 313
Query: 62 KFASSKNKIP 71
K P
Sbjct: 314 HIMDQKELEP 323
Score = 56 (24.8 bits), Expect = 1.4e-46, Sum P(2) = 1.4e-46
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 20 GYTKPTGVQEQA-IPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSK 67
G+ G +E+A +P SS +G GK+A LP+ +K S +
Sbjct: 18 GFAISAGKKEEAKLPQQSHSAFGAASSSSGFGKSAPPQLPSFYKIGSKR 66
>UNIPROTKB|Q5R7D1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9601 "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0008104 "protein
localization" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
CTD:11325 HOVERGEN:HBG081425 KO:K12835 EMBL:CR860187
RefSeq:NP_001126368.1 UniGene:Pab.3212 ProteinModelPortal:Q5R7D1
GeneID:100173349 KEGG:pon:100173349 Uniprot:Q5R7D1
Length = 942
Score = 467 (169.5 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
Identities = 104/281 (37%), Positives = 158/281 (56%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P +++ PTREL Q+ A +R+G ++++++ GG Q + L EI++ TPG
Sbjct: 327 PIAVIVCPTRELCQQIHAEGKRFGKAYN-LRSVAVYGGGSMWEQAKALQEGAEIVVCTPG 385
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLIDH+ N + LV DEADRM DMGF + I RQT+LFSAT +
Sbjct: 386 RLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKI 445
Query: 218 GNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHK-----NRLLDYLLRDKRVGQA 272
+A +I DP+ + I + +++TQ + +ILH N L L+ G
Sbjct: 446 EKLARDILIDPIRVVQGDIGEANEDVTQIV----EILHSGPSKWNWLTRRLVEFTSSGSV 501
Query: 273 VVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARG 332
++F K +A+ +A+ L G LHGD+ Q+ RN+ + + ++ I +LVATDVAARG
Sbjct: 502 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 561
Query: 333 IDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLV 373
+D+P+I V NYD+ + + + HRIGRTGRAG G A +L+
Sbjct: 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 602
Score = 142 (55.0 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
Identities = 30/70 (42%), Positives = 42/70 (60%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F G E ++ + K YT+PT +Q Q +P A+SGRD+I ++TGSGKTAAF+ P L
Sbjct: 254 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 313
Query: 62 KFASSKNKIP 71
K P
Sbjct: 314 HIMDQKELEP 323
Score = 51 (23.0 bits), Expect = 5.0e-46, Sum P(2) = 5.0e-46
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 20 GYTKPTGVQEQA-IPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSK 67
G+ G +E+ +P SS +G GK+A LP+ +K S +
Sbjct: 18 GFAISAGKKEEPKLPQQSHSAFGATSSSSGFGKSAPPQLPSFYKIGSKR 66
>RGD|1304909 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304909
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0003676 EMBL:CH473948 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
CTD:11325 KO:K12835 OrthoDB:EOG47WNN9 GeneTree:ENSGT00610000086076
IPI:IPI00361283 RefSeq:NP_001100529.1 UniGene:Rn.154550
Ensembl:ENSRNOT00000013046 GeneID:303607 KEGG:rno:303607
UCSC:RGD:1304909 NextBio:651732 Uniprot:D4A031
Length = 929
Score = 465 (168.7 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
Identities = 104/281 (37%), Positives = 158/281 (56%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P +++ PTREL Q+ A +R+G ++++++ GG Q + L EI++ TPG
Sbjct: 327 PIAVIVCPTRELCQQIHAECKRFGKAYN-LRSVAVYGGGSMWEQAKALQEGAEIVVCTPG 385
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RLIDH+ N + LV DEADRM DMGF + I RQT+LFSAT +
Sbjct: 386 RLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKI 445
Query: 218 GNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHK-----NRLLDYLLRDKRVGQA 272
+A +I DP+ + I + +++TQ + +ILH N L L+ G
Sbjct: 446 EKLARDILIDPIRVVQGDIGEANEDVTQIV----EILHSGPSKWNWLTRRLVEFTSSGSV 501
Query: 273 VVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARG 332
++F K +A+ +A+ L G LHGD+ Q+ RN+ + + ++ I +LVATDVAARG
Sbjct: 502 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVILDFKKKDIPVLVATDVAARG 561
Query: 333 IDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLV 373
+D+P+I V NYD+ + + + HRIGRTGRAG G A +L+
Sbjct: 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 602
Score = 142 (55.0 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
Identities = 30/70 (42%), Positives = 42/70 (60%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F G E ++ + K YT+PT +Q Q +P A+SGRD+I ++TGSGKTAAF+ P L
Sbjct: 254 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 313
Query: 62 KFASSKNKIP 71
K P
Sbjct: 314 HIMDQKELEP 323
Score = 56 (24.8 bits), Expect = 2.2e-46, Sum P(2) = 2.2e-46
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 20 GYTKPTGVQEQA-IPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSK 67
G+ G +E+A +P SS +G GK+A LP+ +K S +
Sbjct: 18 GFAISAGKKEEAKLPQQSHSAFGAASSSSGFGKSAPPQLPSFYKIGSKR 66
>UNIPROTKB|I3LV06 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:FP312674 RefSeq:XP_003357711.1
Ensembl:ENSSSCT00000031167 GeneID:100621580 KEGG:ssc:100621580
Uniprot:I3LV06
Length = 607
Score = 450 (163.5 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
Identities = 99/308 (32%), Positives = 182/308 (59%)
Query: 98 PRMLVLTPTRELALQVTA-ATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATP 156
P LVLTPTRELA+Q+ A E G + +++ ++GG+P Q+ L + ++++ATP
Sbjct: 260 PSALVLTPTRELAIQIERQAKELMG-GLPRMRTALLVGGLPAPPQLHRLRQRVQVIIATP 318
Query: 157 GRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGI 216
GRL+D M ++ +++I+V+DEAD ML MGF + +++ P QT+L SAT+
Sbjct: 319 GRLLDIMKQSSVDLGNIKIVVVDEADTMLKMGFQEQVLDVLENVPQDCQTILVSATIPTR 378
Query: 217 VGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQ--AVV 274
+ +A + DP+ + ++ Q +L+V++ K +L + +L DK++ + +V
Sbjct: 379 IEQLASRLLHDPVRVLAGEKNLPCPSVRQIVLWVEEPAKKKKLFE-ILNDKKLFKPPVLV 437
Query: 275 FTATKRDADIIADRLN-ISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGI 333
F K AD++++ + I+G + +H + Q R LE L G ++V+T V RG+
Sbjct: 438 FVDCKLGADLLSEAVEKITGLKSTSMHSEKSQIERKTILEGLLEGDYDVVVSTGVLGRGL 497
Query: 334 DVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNH-AERM--NIKKIERFTKQ 390
D+ ++ V N+D+P ++YVH++GR GR G+NG A++ +N+ ++R+ +I K + T
Sbjct: 498 DLISVKLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWDIAKRVKPTGS 557
Query: 391 QIPIEVIN 398
+P +++N
Sbjct: 558 LLPPQLLN 565
Score = 139 (54.0 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
Identities = 31/71 (43%), Positives = 43/71 (60%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
++F G E + L GY PT +Q Q IP + GRDL+ S+ TGSGKTAAF+LP +
Sbjct: 191 IDFGHCGFPETLNFNLKTAGYEVPTPIQMQMIPVGLLGRDLLASADTGSGKTAAFLLPVI 250
Query: 61 HKFASSKNKIP 71
+ A ++K P
Sbjct: 251 TR-ALVQSKAP 260
>UNIPROTKB|E2R4Y9 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:AAEX03005031
Ensembl:ENSCAFT00000017696 Uniprot:E2R4Y9
Length = 623
Score = 448 (162.8 bits), Expect = 2.6e-55, Sum P(2) = 2.6e-55
Identities = 95/307 (30%), Positives = 181/307 (58%)
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P L+LTPTRELA+Q+ + + ++K + ++GG+P Q+ L ++ ++++ATPG
Sbjct: 273 PSALILTPTRELAIQIENQAKELMSGLPRMKTVLLVGGLPLPPQLYRLRQHVKVIIATPG 332
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RL+D + + ++I+V+DEAD ML MGF + I++ P QT+L SAT+ +
Sbjct: 333 RLLDIIKQSSVELCGIKIVVVDEADTMLKMGFQQQVLDILEHVPNDSQTILVSATIPTSI 392
Query: 218 GNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQ--AVVF 275
+A + +P+ + ++ Q IL+V++ K +L + +L DK++ + +VF
Sbjct: 393 EQLASQLLHNPVRIITGEKNLPCSSVRQIILWVEEPAKKKKLFE-ILNDKKLFKPPVLVF 451
Query: 276 TATKRDADIIADRLN-ISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGID 334
K AD++++ + I+G + +H + Q R L+ L G +++V+T V RG+D
Sbjct: 452 VDCKLGADLLSEAVQKITGLKSVSIHSEKSQTERKNILKGLLEGDYEVVVSTGVLGRGLD 511
Query: 335 VPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNH-AERM--NIKKIERFTKQQ 391
+ ++ V N+D+P ++YVH++GR GR G+NG A++ +N+ ++R+ +I K + T
Sbjct: 512 LISVRLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWDIAKRVKPTGSI 571
Query: 392 IPIEVIN 398
+P +++N
Sbjct: 572 LPPQLLN 578
Score = 140 (54.3 bits), Expect = 2.6e-55, Sum P(2) = 2.6e-55
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
++F+ G E + L GY PT +Q Q IP + GRD++ S+ TGSGKTAAF+LP +
Sbjct: 204 IDFEHCGFPEALNHNLKTSGYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPVI 263
Query: 61 HKFASSKNKIP 71
+ A ++K P
Sbjct: 264 TR-ALCESKTP 273
>TAIR|locus:2065215 [details] [associations]
symbol:AT2G47330 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003723 EMBL:AC002337 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 UniGene:At.12226 UniGene:At.25582
HOGENOM:HOG000268793 KO:K12835 EMBL:AY057700 EMBL:AY124871
IPI:IPI00516775 PIR:H84913 RefSeq:NP_566099.1
ProteinModelPortal:O22907 SMR:O22907 STRING:O22907 PaxDb:O22907
PRIDE:O22907 EnsemblPlants:AT2G47330.1 GeneID:819346
KEGG:ath:AT2G47330 GeneFarm:942 TAIR:At2g47330 InParanoid:O22907
OMA:QEYANLM PhylomeDB:O22907 ProtClustDB:CLSN2688982
Genevestigator:O22907 GermOnline:AT2G47330 Uniprot:O22907
Length = 760
Score = 452 (164.2 bits), Expect = 2.7e-55, Sum P(2) = 2.7e-55
Identities = 110/283 (38%), Positives = 156/283 (55%)
Query: 98 PRMLVLTPTRELALQVTAATERYG-LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATP 156
P ++ PTRELA Q+ +++ Y ++ A+ GGM Q + L EI++ATP
Sbjct: 302 PIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAV--YGGMSKHEQFKELKAGCEIVVATP 359
Query: 157 GRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGI 216
GRLID + + LVLDEADRM D+GF + IV RQT+LFSAT+
Sbjct: 360 GRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPWK 419
Query: 217 VGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNR-LLDYLLRDKRVGQAVVF 275
V +A I DP+ + V + ++ITQ + + K LL+ L G +VF
Sbjct: 420 VEKLAREILSDPIRVTVGEVGMANEDITQVVNVIPSDAEKLPWLLEKLPGMIDEGDVLVF 479
Query: 276 TATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDV 335
+ K D I +L ++ F A LHGD Q +R TL+ + G +L+ATDVAARG+D+
Sbjct: 480 ASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVLIATDVAARGLDI 539
Query: 336 PAITHVFNYDLPKFPEDYVHRIGRTGRAG-RNGFAVSLVNHAE 377
++ V NYD+ K + +VHRIGRTGRAG R+G A +LV E
Sbjct: 540 KSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQRE 582
Score = 148 (57.2 bits), Expect = 2.7e-55, Sum P(2) = 2.7e-55
Identities = 28/58 (48%), Positives = 40/58 (68%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
F+ G ++ A+ K Y KPT +Q QA+P +SGRD+I ++TGSGKTAAF+LP +
Sbjct: 230 FEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMI 287
>UNIPROTKB|I3LQ10 [details] [associations]
symbol:LOC100626268 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 Ensembl:ENSSSCT00000028964 OMA:RYLVALC
Uniprot:I3LQ10
Length = 684
Score = 450 (163.5 bits), Expect = 3.0e-55, Sum P(2) = 3.0e-55
Identities = 126/327 (38%), Positives = 181/327 (55%)
Query: 89 ERLRFKPAQ-P--RMLVLTPTRELALQVTAATERYGLY-MKKIKAISIL--GGMPYLRQM 142
ERL +KP Q P R+LVL PTREL +QV + T++ + I IS L GG+ Q
Sbjct: 271 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQSSLCVITTISGLFAGGLDVKSQE 330
Query: 143 QLL-SRNPEILLATPGRLIDHM-NSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDAT 200
L + P+IL+ATPGRLIDH+ N + S +++L+LDEADRMLD F +++I+
Sbjct: 331 AALRAAXPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMC 390
Query: 201 PVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNR-- 258
+ RQTMLFSAT+ V ++A K+P+ + VNS + Q + + +R
Sbjct: 391 SLHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREA 450
Query: 259 LLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARN-RTLENLRR 317
++ LL ++FT TK+ A + L + G LHG+L Q R L +
Sbjct: 451 IVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRXLEALWRFKD 510
Query: 318 GRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAE 377
+I ILVATDVAARG+D+ + V N+ +P + YVHR+GRT RAGR G +VSL+
Sbjct: 511 EQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLLKEI- 569
Query: 378 RMNIKKIERFTKQQI-PIEVINGFEPK 403
+K + K +I P +VI F K
Sbjct: 570 ---VKAAKAPVKARILPQDVILKFRDK 593
Score = 144 (55.7 bits), Expect = 3.0e-55, Sum P(2) = 3.0e-55
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
++F+ + L +LKA+ +G+ +PT +Q+ IP + G+D+ + TG+GKTAAF LP L
Sbjct: 211 LSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 270
Query: 61 HKFASSKNKIPVMK 74
+ + PV +
Sbjct: 271 ERLIYKPRQAPVTR 284
>UNIPROTKB|F1NA53 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 EMBL:AADN02071779 EMBL:AADN02071780
IPI:IPI00684751 ProteinModelPortal:F1NA53
Ensembl:ENSGALT00000004949 ArrayExpress:F1NA53 Uniprot:F1NA53
Length = 402
Score = 458 (166.3 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
Identities = 112/322 (34%), Positives = 177/322 (54%)
Query: 101 LVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160
LVLTPTRELA Q+ G + +K ++GG+ + Q LSR P +++ATPGRL
Sbjct: 74 LVLTPTRELAYQIAEQFRVLGKPLG-LKDCVVVGGLDMVAQALELSRKPHVVIATPGRLA 132
Query: 161 DHMNSGK-INFSHLQILVLDEADRMLDMG---FINDIEKIVDATPVTRQTMLFSATLDGI 216
DH+ S + L+ LVLDEADR+L+ G F D+E I++A P RQT+LFSATL
Sbjct: 133 DHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEAVPARRQTLLFSATLTDT 192
Query: 217 VGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLR---DKRVGQAV 273
+ + P + S + + Q L V + + K+ L +L++ D+ ++
Sbjct: 193 LNELKSLAMNRPFFWEAASEVRTVDELDQRYLLVPEAV-KDAYLVHLIQTFQDEHEDWSI 251
Query: 274 V-FTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARG 332
+ FT T ++ I+ L F + LH + Q R L + KIL+ATDVAARG
Sbjct: 252 IIFTKTCKECQILNMMLRKFSFPSVALHSMMKQRQRFAALAKFKSSIFKILIATDVAARG 311
Query: 333 IDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVN-------HAERMNIK-KI 384
+D+P + V N++ P P+ Y+HR+GRT RAGRNG ++++V HA IK K+
Sbjct: 312 LDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQYDIHLVHAIEEEIKLKL 371
Query: 385 ERFT-KQQIPIEVINGFEPKKR 405
+ F+ ++++ ++++ +R
Sbjct: 372 QEFSVEEKLVLDILTHVNVTRR 393
Score = 129 (50.5 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
Identities = 25/58 (43%), Positives = 39/58 (67%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
F+ +GL +++ ++G ++PT VQ IP + GRD + ++TGSGKTAAF+LP L
Sbjct: 4 FRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVL 61
>UNIPROTKB|F1NYX0 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:AADN02071779
EMBL:AADN02071780 IPI:IPI00822654 Ensembl:ENSGALT00000035055
ArrayExpress:F1NYX0 Uniprot:F1NYX0
Length = 482
Score = 458 (166.3 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
Identities = 112/322 (34%), Positives = 177/322 (54%)
Query: 101 LVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160
LVLTPTRELA Q+ G + +K ++GG+ + Q LSR P +++ATPGRL
Sbjct: 77 LVLTPTRELAYQIAEQFRVLGKPLG-LKDCVVVGGLDMVAQALELSRKPHVVIATPGRLA 135
Query: 161 DHMNSGK-INFSHLQILVLDEADRMLDMG---FINDIEKIVDATPVTRQTMLFSATLDGI 216
DH+ S + L+ LVLDEADR+L+ G F D+E I++A P RQT+LFSATL
Sbjct: 136 DHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEAVPARRQTLLFSATLTDT 195
Query: 217 VGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLR---DKRVGQAV 273
+ + P + S + + Q L V + + K+ L +L++ D+ ++
Sbjct: 196 LNELKSLAMNRPFFWEAASEVRTVDELDQRYLLVPEAV-KDAYLVHLIQTFQDEHEDWSI 254
Query: 274 V-FTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARG 332
+ FT T ++ I+ L F + LH + Q R L + KIL+ATDVAARG
Sbjct: 255 IIFTKTCKECQILNMMLRKFSFPSVALHSMMKQRQRFAALAKFKSSIFKILIATDVAARG 314
Query: 333 IDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVN-------HAERMNIK-KI 384
+D+P + V N++ P P+ Y+HR+GRT RAGRNG ++++V HA IK K+
Sbjct: 315 LDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQYDIHLVHAIEEEIKLKL 374
Query: 385 ERFT-KQQIPIEVINGFEPKKR 405
+ F+ ++++ ++++ +R
Sbjct: 375 QEFSVEEKLVLDILTHVNVTRR 396
Score = 129 (50.5 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
Identities = 25/58 (43%), Positives = 39/58 (67%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
F+ +GL +++ ++G ++PT VQ IP + GRD + ++TGSGKTAAF+LP L
Sbjct: 7 FRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVL 64
>UNIPROTKB|P54824 [details] [associations]
symbol:ddx6 "ATP-dependent RNA helicase ddx6" species:8355
"Xenopus laevis" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003723
GO:GO:0030529 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG106685 CTD:1656 EMBL:X92421 EMBL:BC170228 EMBL:BC170230
RefSeq:NP_001083721.1 UniGene:Xl.157 IntAct:P54824 PRIDE:P54824
GeneID:399080 KEGG:xla:399080 Xenbase:XB-GENE-922237 Uniprot:P54824
Length = 481
Score = 452 (164.2 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
Identities = 102/308 (33%), Positives = 167/308 (54%)
Query: 89 ERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRN 148
ERL K + +V+ PTRELALQV+ + +M K ++ GG + L
Sbjct: 155 ERLDLKKDCIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDT 214
Query: 149 PEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTML 208
+++ATPGR++D + G H+Q++VLDEAD++L F+ +E I+ P RQ +L
Sbjct: 215 VHVVIATPGRILDLIKKGVAKVDHIQMIVLDEADKLLSQDFMQIMEDIIMTLPKNRQILL 274
Query: 209 FSATLDGIVGNMAENITKDPLILKVNSIEKKQ-KNITQSILFVDDILHKNRLLDYLLRDK 267
+SAT V + P ++N +E+ K +TQ +V + K L+ L
Sbjct: 275 YSATFPLSVQKFMTLHLQKPY--EINLMEELTLKGVTQYYAYVTE-RQKVHCLNTLFSRL 331
Query: 268 RVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATD 327
++ Q+++F + + +++A +++ G+ +H + Q RNR + R G + LV TD
Sbjct: 332 QINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 391
Query: 328 VAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERF 387
+ RGID+ A+ V N+D PK E Y+HRIGR+GR G G A++L+ + +R N+K IE
Sbjct: 392 LFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQ 451
Query: 388 TKQQI-PI 394
+I PI
Sbjct: 452 LGTEIKPI 459
Score = 135 (52.6 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
Identities = 24/71 (33%), Positives = 46/71 (64%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F+ L +L + ++G+ KP+ +QE++IP A+SGRD++ ++ G+GK+ A+++P L +
Sbjct: 97 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 156
Query: 63 FASSKNKIPVM 73
K+ I M
Sbjct: 157 LDLKKDCIQAM 167
>DICTYBASE|DDB_G0291804 [details] [associations]
symbol:ddx6 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0291804 GO:GO:0005524 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0006397 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
EMBL:AAFI02000185 RefSeq:XP_629938.1 HSSP:P39517
ProteinModelPortal:Q54E49 SMR:Q54E49 PRIDE:Q54E49
EnsemblProtists:DDB0234196 GeneID:8628344 KEGG:ddi:DDB_G0291804
OMA:QFMEKHL ProtClustDB:CLSZ2429504 Uniprot:Q54E49
Length = 423
Score = 428 (155.7 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
Identities = 96/298 (32%), Positives = 165/298 (55%)
Query: 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGR 158
++L+L PTRELALQ + + G YM ++ ++ GG + L IL+ATPGR
Sbjct: 119 QVLILVPTRELALQTSQVCKELGKYMN-VQVMASTGGTSLKDDIMRLYNPVHILVATPGR 177
Query: 159 LIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVG 218
++D N S+ +++DEAD++L F +E++++ P RQ +LFSAT V
Sbjct: 178 VLDLAQKNVANLSNCHTMIMDEADKLLSQEFQPLVEQLINFLPQQRQILLFSATFPVTVK 237
Query: 219 NMAENITKDPLILKVNSIEKKQ-KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTA 277
+ E+ + ++N +E+ K +TQ FV++ K L+ L ++ Q+++F
Sbjct: 238 SFKEHYLQQAF--EINLMEELTLKGVTQYYAFVEE-RQKIHCLNTLFSKLQINQSIIFCN 294
Query: 278 TKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPA 337
+ +++A ++ G+ +H + Q RNR + R G + LV++D+ RGID+
Sbjct: 295 SVNRVELLAKKITELGYSCFFIHAKMVQAHRNRVFHDFRNGACRNLVSSDLFTRGIDIQD 354
Query: 338 ITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQI-PI 394
+ V N+D PK E Y+HRIGR+GR G G A++L+ + +R ++ KIE+ +I PI
Sbjct: 355 VNVVINFDFPKHSETYLHRIGRSGRFGHLGLAINLITYEDRFSLYKIEQELGTEIKPI 412
Score = 159 (61.0 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
Identities = 29/72 (40%), Positives = 51/72 (70%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F + L +L+ + + GY KP+ +QE+AIP A++GRD++ ++ G+GKTA+F++PAL
Sbjct: 50 DFDDLHLKRDLLRGIFEKGYVKPSPIQEKAIPIALAGRDIMARAKNGTGKTASFLIPALE 109
Query: 62 KFASSKNKIPVM 73
K +K+ I V+
Sbjct: 110 KTDPTKDVIQVL 121
>ZFIN|ZDB-GENE-021220-2 [details] [associations]
symbol:ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
54" species:7955 "Danio rerio" [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-021220-2 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14808
HOGENOM:HOG000246455 GeneTree:ENSGT00550000075100 CTD:79039
HOVERGEN:HBG051333 OrthoDB:EOG469QTB EMBL:CU929062 EMBL:FP236447
EMBL:AY099535 IPI:IPI00481864 RefSeq:NP_775375.1 UniGene:Dr.18320
STRING:Q8JGR2 Ensembl:ENSDART00000026416 Ensembl:ENSDART00000128587
GeneID:286777 KEGG:dre:286777 NextBio:20806437 Uniprot:Q8JGR2
Length = 862
Score = 454 (164.9 bits), Expect = 3.6e-55, Sum P(2) = 3.6e-55
Identities = 108/291 (37%), Positives = 166/291 (57%)
Query: 89 ERLRFKPAQP--RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLS 146
E+L+ AQ R L+LTPTRELALQ T+ G + ++ ILGG Q L
Sbjct: 138 EKLKAPQAQTGARALILTPTRELALQTMKFTKELGKFTG-LRTALILGGDSMDDQFAALH 196
Query: 147 RNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQT 206
NP+I++ TPGRL+ + + ++ +V DEADR+ +MGF +++I+ P RQT
Sbjct: 197 ENPDIIIGTPGRLMHVIQEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIRRLPDARQT 256
Query: 207 MLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSI--LFVDDILHKNRLLDYLL 264
+LFSATL ++ A +P++++++ K + + S L +DD K LL +LL
Sbjct: 257 LLFSATLPKLIVEFARAGLTEPVLIRLDVDTKLSEQLKLSFFSLRLDD---KPALLLHLL 313
Query: 265 RD--KRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKI 322
R+ K Q VVF ATK + + + L+ G + ++ L Q AR ++ ++ +
Sbjct: 314 RNVVKPQEQTVVFVATKHHVEYLKELLSAEGVDCSCIYSALDQTARKISIGRFVHRKVML 373
Query: 323 LVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLV 373
L+ TDVAARGID+P + +V NY+ P P+ ++HR+GR RAGR G A SLV
Sbjct: 374 LLVTDVAARGIDIPLLDNVINYNFPCKPKLFLHRVGRVARAGRGGTAYSLV 424
Score = 149 (57.5 bits), Expect = 3.6e-55, Sum P(2) = 3.6e-55
Identities = 27/60 (45%), Positives = 41/60 (68%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F+S+GL V K ++K GY PT +Q + IP + G+D++ ++TGSGKTAAF++P K
Sbjct: 80 FQSMGLSYPVYKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTAAFLVPLFEK 139
>SGD|S000002319 [details] [associations]
symbol:DHH1 "Cytoplasmic DExD/H-box helicase, stimulates mRNA
decapping" species:4932 "Saccharomyces cerevisiae" [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=IMP] [GO:0003724 "RNA helicase activity" evidence=IGI;ISS]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002319 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 EMBL:BK006938 GO:GO:0003723
GO:GO:0000753 GO:GO:0000932 EMBL:Z67750 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0033962 GO:GO:0034063 GO:GO:0008026 eggNOG:COG0513
GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797 KO:K12614
OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000290 OrthoDB:EOG4QJVWF EMBL:X66057 EMBL:Z74208 PIR:S31229
RefSeq:NP_010121.1 PDB:1S2M PDBsum:1S2M ProteinModelPortal:P39517
SMR:P39517 DIP:DIP-1243N IntAct:P39517 MINT:MINT-385061
STRING:P39517 PaxDb:P39517 PeptideAtlas:P39517 EnsemblFungi:YDL160C
GeneID:851394 KEGG:sce:YDL160C CYGD:YDL160c
EvolutionaryTrace:P39517 NextBio:968552 Genevestigator:P39517
GermOnline:YDL160C Uniprot:P39517
Length = 506
Score = 429 (156.1 bits), Expect = 4.2e-55, Sum P(2) = 4.2e-55
Identities = 102/301 (33%), Positives = 168/301 (55%)
Query: 89 ERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRN 148
E+++ K + + L++ PTRELALQ + G + I + GG + L+
Sbjct: 106 EKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCG-ISCMVTTGGTNLRDDILRLNET 164
Query: 149 PEILLATPGRLIDHMNSGKI-NFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTM 207
IL+ TPGR++D + S K+ + S + ++DEAD+ML F IE+I+ P T Q++
Sbjct: 165 VHILVGTPGRVLD-LASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSL 223
Query: 208 LFSATLDGIVGN-MAENITKDPLILKVNSIEKKQ-KNITQSILFVDDILHKNRLLDYLLR 265
LFSAT V M +++ K P ++N +E+ K ITQ FV++ K L+ L
Sbjct: 224 LFSATFPLTVKEFMVKHLHK-PY--EINLMEELTLKGITQYYAFVEE-RQKLHCLNTLFS 279
Query: 266 DKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVA 325
++ QA++F + +++A ++ G+ H + Q RN+ R+G+++ LV
Sbjct: 280 KLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVC 339
Query: 326 TDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIE 385
+D+ RGID+ A+ V N+D PK E Y+HRIGR+GR G G A++L+N +R N+ KIE
Sbjct: 340 SDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIE 399
Query: 386 R 386
+
Sbjct: 400 Q 400
Score = 157 (60.3 bits), Expect = 4.2e-55, Sum P(2) = 4.2e-55
Identities = 29/71 (40%), Positives = 46/71 (64%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F+ L +L + + G+ KP+ +QE+AIP AI+GRD++ ++ G+GKTAAF++P L K
Sbjct: 48 FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEK 107
Query: 63 FASSKNKIPVM 73
NKI +
Sbjct: 108 VKPKLNKIQAL 118
>RGD|1308793 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10116 "Rattus norvegicus" [GO:0000237 "leptotene"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
[GO:0007141 "male meiosis I" evidence=IEA;ISO] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA;ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0032880 "regulation of protein localization"
evidence=IEA;ISO] [GO:0033391 "chromatoid body" evidence=IEA;ISO]
[GO:0044464 "cell part" evidence=ISO] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA;ISO] [GO:0071546 "pi-body"
evidence=ISO;ISS] [GO:0071547 "piP-body" evidence=ISO;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
Identities = 143/404 (35%), Positives = 221/404 (54%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F+ L + + + K GYTK T VQ+ +IP ++GRDL+ +QTGSGKTAAF+LP L
Sbjct: 273 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPIL 332
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
+M+ + + RFK Q P +++ PTREL Q+ +
Sbjct: 333 AH---------MMRDGITAS-----------RFKELQEPECIIVAPTRELINQIYLEARK 372
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
+ + ++A+ I GG + ++ + + IL ATPGRL+D + KI ++ LVLD
Sbjct: 373 FS-FGTCVRAVVIYGGTQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLD 431
Query: 180 EADRMLDMGFINDIEKIVDATPVT----RQTMLFSATLDGIVGNMA-ENITKDPLILKVN 234
EADRMLDMGF +++K++ + RQT+LFSAT + +A E + + L + V
Sbjct: 432 EADRMLDMGFGPEMKKLISCPGMPSKEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVG 491
Query: 235 SIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGF 294
+ +++ QSIL V + K +L++ +LR+ + +VF TK+ AD IA L
Sbjct: 492 QVGGACRDVQQSILQVGPVFKKRKLVE-ILRNIGDERPMVFVETKKKADFIATFLCQEKI 550
Query: 295 LAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYV 354
+HGD Q R + L + R G+ +LVAT VAARG+D+ + HV N++LP ++YV
Sbjct: 551 STTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFNLPSTIDEYV 610
Query: 355 HRIGRTGRAGRNGFAVSLV-----NHAERMNIKKIERFTKQQIP 393
HRIGRTGR G G A+S NH + +K + +Q +P
Sbjct: 611 HRIGRTGRCGNTGRAISFFDTESDNHLAQPLVKVLSD-AQQDVP 653
>UNIPROTKB|Q64060 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
Identities = 143/404 (35%), Positives = 221/404 (54%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F+ L + + + K GYTK T VQ+ +IP ++GRDL+ +QTGSGKTAAF+LP L
Sbjct: 273 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPIL 332
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
+M+ + + RFK Q P +++ PTREL Q+ +
Sbjct: 333 AH---------MMRDGITAS-----------RFKELQEPECIIVAPTRELINQIYLEARK 372
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
+ + ++A+ I GG + ++ + + IL ATPGRL+D + KI ++ LVLD
Sbjct: 373 FS-FGTCVRAVVIYGGTQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLD 431
Query: 180 EADRMLDMGFINDIEKIVDATPVT----RQTMLFSATLDGIVGNMA-ENITKDPLILKVN 234
EADRMLDMGF +++K++ + RQT+LFSAT + +A E + + L + V
Sbjct: 432 EADRMLDMGFGPEMKKLISCPGMPSKEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVG 491
Query: 235 SIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGF 294
+ +++ QSIL V + K +L++ +LR+ + +VF TK+ AD IA L
Sbjct: 492 QVGGACRDVQQSILQVGPVFKKRKLVE-ILRNIGDERPMVFVETKKKADFIATFLCQEKI 550
Query: 295 LAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYV 354
+HGD Q R + L + R G+ +LVAT VAARG+D+ + HV N++LP ++YV
Sbjct: 551 STTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFNLPSTIDEYV 610
Query: 355 HRIGRTGRAGRNGFAVSLV-----NHAERMNIKKIERFTKQQIP 393
HRIGRTGR G G A+S NH + +K + +Q +P
Sbjct: 611 HRIGRTGRCGNTGRAISFFDTESDNHLAQPLVKVLSD-AQQDVP 653
WARNING: HSPs involving 738 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.137 0.382 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 453 439 0.00089 118 3 11 22 0.36 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 988
No. of states in DFA: 564 (60 KB)
Total size of DFA: 205 KB (2116 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 36.18u 0.10s 36.28t Elapsed: 00:00:22
Total cpu time: 36.25u 0.10s 36.35t Elapsed: 00:00:23
Start: Thu Aug 15 12:48:05 2013 End: Thu Aug 15 12:48:28 2013
WARNINGS ISSUED: 2