RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9399
(453 letters)
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 163 bits (414), Expect = 1e-48
Identities = 67/234 (28%), Positives = 117/234 (50%), Gaps = 32/234 (13%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGR-DLIVSSQTGSGKTAAFMLPA 59
MNF + L + +L A+ G+ KPT +Q + IP ++ +++ ++TGSGKTA+F +P
Sbjct: 4 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPL 63
Query: 60 LHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
+ + ++ + ++ E L+
Sbjct: 64 IELVNENNGIEAIILTPTRELAIQVADEIESLK--------------------------- 96
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
K +K I GG Q++ L +N I++ TPGR++DH+N G +N +++ +LD
Sbjct: 97 ---GNKNLKIAKIYGGKAIYPQIKAL-KNANIVVGTPGRILDHINRGTLNLKNVKYFILD 152
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKV 233
EAD ML+MGFI D+EKI++A ++ +LFSAT+ + N+A+ D +K
Sbjct: 153 EADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKA 206
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 143 bits (361), Expect = 5e-41
Identities = 62/233 (26%), Positives = 104/233 (44%), Gaps = 30/233 (12%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
F + L E +L+ + G+ +P+ +Q++AI I G D++ +Q+G+GKT F +
Sbjct: 10 YKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIA-- 67
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+R+ P+ L+L PTRELALQ+
Sbjct: 68 --------------------------ALQRIDTSVKAPQALMLAPTRELALQIQKVVMAL 101
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
+M I G L R+ +I++ TPGR+ D++ + +++ +LDE
Sbjct: 102 AFHMDIKVHACIGGTSFVEDAEGL--RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDE 159
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKV 233
AD ML GF I +I P T Q +L SAT+ V + ++P+ + V
Sbjct: 160 ADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILV 212
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 143 bits (360), Expect = 8e-41
Identities = 66/232 (28%), Positives = 105/232 (45%), Gaps = 28/232 (12%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F + L E +L+ + G+ KP+ +Q++AI I G D+I +Q+G+GKTA F
Sbjct: 13 SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATF------ 66
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ +++ + LVL PTRELA Q+ G
Sbjct: 67 ----------------------AISILQQIELDLKATQALVLAPTRELAQQIQKVVMALG 104
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
YM I G +L P I++ TPGR+ D +N ++ ++++ VLDEA
Sbjct: 105 DYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEA 164
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKV 233
D ML GF + I I Q +L SAT+ V + + +DP+ + V
Sbjct: 165 DEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILV 216
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 136 bits (343), Expect = 2e-38
Identities = 69/233 (29%), Positives = 116/233 (49%), Gaps = 30/233 (12%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F+ L +L+A+V G+ P+ VQ + IP AI G D++ +++G GKTA F+L L +
Sbjct: 3 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 62
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
Q +LV+ TRELA Q++ ER+
Sbjct: 63 L----------------------------EPVTGQVSVLVMCHTRELAFQISKEYERFSK 94
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRN-PEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
YM +K GG+ + ++L +N P I++ TPGR++ + +N H++ +LDE
Sbjct: 95 YMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDEC 154
Query: 182 DRMLD-MGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKV 233
D+ML+ + D+++I TP +Q M+FSATL + + +DP+ + V
Sbjct: 155 DKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 207
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 134 bits (339), Expect = 9e-38
Identities = 68/232 (29%), Positives = 109/232 (46%), Gaps = 29/232 (12%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F ++GL E +L+ + G+ KP+ +Q++AI I GRD+I SQ+G+GKTA F +
Sbjct: 18 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS--- 74
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ L + + + L+L PTRELA+Q+ G
Sbjct: 75 -------------------------VLQCLDIQVRETQALILAPTRELAVQIQKGLLALG 109
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
YM ++ + +GG ++ L ++ TPGR+ D + + +++LVLDEA
Sbjct: 110 DYMN-VQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEA 168
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKV 233
D ML+ GF I + P Q +L SATL + M DP+ + V
Sbjct: 169 DEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILV 220
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 133 bits (335), Expect = 5e-37
Identities = 75/237 (31%), Positives = 127/237 (53%), Gaps = 24/237 (10%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
NF + L + ++ Y +PT +Q+ AIPA + RD++ +QTGSGKTAAF++P +
Sbjct: 21 ENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPII 80
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ ++ K A P+ L+L PTRELA+Q+ + ++++
Sbjct: 81 NHLVC-------------------QDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKF 121
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
L +++ + GG Q++ + +L+ATPGRL+D + KI+ + +VLDE
Sbjct: 122 SLNT-PLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDE 180
Query: 181 ADRMLDMGFINDIEKIVDA----TPVTRQTMLFSATLDGIVGNMAENITKDPLILKV 233
ADRMLDMGF I KI++ + + RQT++FSAT + +A + + + + V
Sbjct: 181 ADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTV 237
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 133 bits (336), Expect = 2e-36
Identities = 49/363 (13%), Positives = 91/363 (25%), Gaps = 85/363 (23%)
Query: 37 SGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPA 96
R I+ G+GKT ++ + +
Sbjct: 8 KKRLTIMDLHPGAGKTKRYLPAIVREAIKRG----------------------------- 38
Query: 97 QPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATP 156
R L+L PTR +A ++ A + + + G + M
Sbjct: 39 -LRTLILAPTRVVAAEMEEALRGLPIRYQTPAIRAEHTGREIVDLM------------CH 85
Query: 157 GRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGI 216
+ S I + ++++DEA + +AT G
Sbjct: 86 ATFTMRLLS-PIRVPNYNLIIMDEAHFTDPASIAARGYISTRVEMGEAAGIFMTATPPGS 144
Query: 217 VGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFT 276
++ N +++ K G+ V F
Sbjct: 145 RDPFPQSNAPI-----------------MDEEREIPERSWNSGHEWVTDFK--GKTVWFV 185
Query: 277 ATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVP 336
+ + + IA L +G L + +T R +V TD++ G +
Sbjct: 186 PSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYIKT----RTNDWDFVVTTDISEMGANFK 241
Query: 337 ---------AITHVFNYDLPKF----------PEDYVHRIGRTGRAGRNGFAVSLVNHAE 377
+ V D + R GR GR +N +
Sbjct: 242 AERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIYMGEP 301
Query: 378 RMN 380
N
Sbjct: 302 LEN 304
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 131 bits (331), Expect = 1e-35
Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 23/150 (15%)
Query: 235 SIEKKQKNITQSIL----FVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLN 290
S+ NI + L + L + G+ ++F +K+ D +A +L
Sbjct: 3 SVTVPHPNIEEVALSTTGEIPFYGKAIPLEVI-----KGGRHLIFCHSKKKCDELAAKLV 57
Query: 291 ISGFLAAPLHGDLHQNAR----------NRTLENLRRGRIKILVATDVAARG---IDVPA 337
G A + L + L G ++ + +
Sbjct: 58 ALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDP 117
Query: 338 ITHVFNYDLPKFPEDYVHRIGRTGRAGRNG 367
+ LP+ R GRTGR G+ G
Sbjct: 118 TFTIETTTLPQDAVSRTQRRGRTGR-GKPG 146
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 128 bits (321), Expect = 2e-35
Identities = 65/228 (28%), Positives = 113/228 (49%), Gaps = 28/228 (12%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F+ L +L + ++G+ KP+ +QE++IP A+SGRD++ ++ G+GK+ A+++P L
Sbjct: 4 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 63
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ K + +V+ PTRELALQV+ +
Sbjct: 64 RL----------------------------DLKKDNIQAMVIVPTRELALQVSQICIQVS 95
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+M K ++ GG + L +++ATPGR++D + G H+Q++VLDEA
Sbjct: 96 KHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEA 155
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPL 229
D++L F+ +E I+ P RQ +L+SAT V + + P
Sbjct: 156 DKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPY 203
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 117 bits (294), Expect = 2e-31
Identities = 63/231 (27%), Positives = 99/231 (42%), Gaps = 29/231 (12%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F+ L +L + + G+ KP+ +QE+AIP AI+GRD++ ++ G+GKTAAF++P L K
Sbjct: 3 FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEK 62
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
NKI + T+ R
Sbjct: 63 VKPKLNKIQALI-----------------------------MVPTRELALQTSQVVRTLG 93
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
I + GG + L+ IL+ TPGR++D + + S + ++DEAD
Sbjct: 94 KHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEAD 153
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKV 233
+ML F IE+I+ P T Q++LFSAT V P + +
Sbjct: 154 KMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINL 204
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 111 bits (277), Expect = 1e-29
Identities = 55/151 (36%), Positives = 87/151 (57%)
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
I Q + V++ +K L L V QAV+F T+R + + +L F + ++ D
Sbjct: 1 IKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSD 60
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
L Q R+ ++ R G +IL++TD+ ARGIDV ++ V NYDLP E+Y+HRIGR GR
Sbjct: 61 LPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGR 120
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIP 393
GR G A++ V + + ++++E+F QI
Sbjct: 121 FGRKGVAINFVTNEDVGAMRELEKFYSTQIE 151
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 110 bits (276), Expect = 1e-28
Identities = 32/218 (14%), Positives = 57/218 (26%), Gaps = 51/218 (23%)
Query: 13 LKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPV 72
+ +P +Q+ + ++ TG GKT+ + +L
Sbjct: 33 FVEFFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLF----------- 81
Query: 73 MKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMK-----KI 127
R V+ PT L +Q +Y I
Sbjct: 82 --------------------LALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLI 121
Query: 128 KAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLD- 186
RN +I++ T L H H + +D+ D +L
Sbjct: 122 GYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYR----ELGHFDFIFVDDVDAILKA 177
Query: 187 ----------MGFINDIEKIVDATPVTRQTMLFSATLD 214
+GF D++ M+ +AT
Sbjct: 178 SKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK 215
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 209
Score = 108 bits (269), Expect = 5e-28
Identities = 60/231 (25%), Positives = 103/231 (44%), Gaps = 25/231 (10%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F +++A+ + + KPT +QE+ IP A+ G ++ SQTG+GKT A++LP
Sbjct: 3 FTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLP---- 58
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
I + R + T ++
Sbjct: 59 ---------------------IMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCP 97
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+ I A ++GG + ++ L+ P I++ TPGR+ D + ++ ILV+DEAD
Sbjct: 98 KDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEAD 157
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKV 233
MLDMGFI D+++I P Q ++FSAT+ + + ++P + V
Sbjct: 158 LMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHV 208
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 104 bits (260), Expect = 4e-27
Identities = 55/153 (35%), Positives = 88/153 (57%)
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q + V+ K L L + QAV+F TKR D + +++ + F + +H
Sbjct: 6 EGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMH 65
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+ Q R ++ R G ++L++TDV ARG+DVP ++ + NYDLP E Y+HRIGR+
Sbjct: 66 GDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRS 125
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIP 393
GR GR G A++ V + + ++ IE++ QI
Sbjct: 126 GRYGRKGVAINFVKNDDIRILRDIEQYYSTQID 158
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 106 bits (266), Expect = 8e-27
Identities = 51/265 (19%), Positives = 91/265 (34%), Gaps = 25/265 (9%)
Query: 123 YMKKIKAISILGGM-PYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+K + +L P + + ++L I + + + H L L A
Sbjct: 29 ALKPLAETGLLESSSPDIPKKEVLRAGQII---NEEMAKGNHDLRGLLLYHAMALKLHHA 85
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
+L+ ++ + + + A ++ I D + K S+ + K
Sbjct: 86 IELLETQGLSALRAYIKKLYEEAKAGSTKA---------SKEIFSDKRMKKAISLLVQAK 136
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
I + ++ L+ K+ + +VFT + A I + L G A G
Sbjct: 137 EIGLD---HPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVG 193
Query: 302 DLHQNAR--------NRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDY 353
+ L+ RG +LVAT V G+DVP + V Y+
Sbjct: 194 QASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRS 253
Query: 354 VHRIGRTGRAGRNGFAVSLVNHAER 378
+ R GRTGR G + L+ R
Sbjct: 254 IQRRGRTGRHM-PGRVIILMAKGTR 277
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25
{Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 99.7 bits (247), Expect = 2e-25
Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 6/159 (3%)
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NI Q + + K + L + +GQA++F T+R+A + + G + L
Sbjct: 4 NNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLS 63
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKF------PEDYV 354
G+L R ++ R G+ K+L+ T+V ARGIDV +T V N+DLP E Y+
Sbjct: 64 GELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYL 123
Query: 355 HRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIP 393
HRIGRTGR G+ G A +++ E ++ KI+ I
Sbjct: 124 HRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSIK 162
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 99.3 bits (246), Expect = 3e-25
Identities = 66/153 (43%), Positives = 94/153 (61%), Gaps = 2/153 (1%)
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NI QS + V++ + L LL++K +VF TKRD +A L GF A +H
Sbjct: 2 ANIEQSYVEVNE-NERFEALCRLLKNKE-FYGLVFCKTKRDTKELASMLRDIGFKAGAIH 59
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GDL Q+ R + + ++ +I+IL+ATDV +RGIDV + V NY LP+ PE Y+HRIGRT
Sbjct: 60 GDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRT 119
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIP 393
GRAG+ G A+S++N E ++ IER K +I
Sbjct: 120 GRAGKKGKAISIINRREYKKLRYIERAMKLKIK 152
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 95.1 bits (235), Expect = 2e-23
Identities = 42/235 (17%), Positives = 74/235 (31%), Gaps = 42/235 (17%)
Query: 3 FKSIGLHELVLKALVKV-GYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+ + L + L + GY + QE+ I +SGRD +V TG GK+ + +PAL
Sbjct: 4 AEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALL 63
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+V++P L + G
Sbjct: 64 LN----------------------------------GLTVVVSPLISLMKDQVDQLQANG 89
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+ + + + + +L P RL+ + + +L +DEA
Sbjct: 90 VAAACLNSTQTREQQLEVMTGC-RTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEA 148
Query: 182 DRMLDMGFINDIE----KIVDATPVTRQTMLFSATLD-GIVGNMAENIT-KDPLI 230
+ G E + T M +AT D ++ + DPLI
Sbjct: 149 HCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLI 203
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 95.6 bits (237), Expect = 4e-23
Identities = 28/200 (14%), Positives = 56/200 (28%), Gaps = 22/200 (11%)
Query: 255 HKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLEN 314
L +L +++ T +A+ I + L + + E
Sbjct: 12 ESISTLSSILEKLG-TGGIIYARTGEEAEEIYE------SLKNKFRIGIVTATKKGDYEK 64
Query: 315 LRRGRIKILVAT----DVAARGIDVP-AITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFA 369
G I L+ T RG+D+P I P + I
Sbjct: 65 FVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP----SFRVTIEDIDSLSPQMVK 120
Query: 370 VSLVNHAERMNIKKIERFTKQQI-----PIEVINGFEPKKRIRTYYSRYRFNNNNWKTHN 424
+ + I+++ ++ I ++ + G E + + +T+
Sbjct: 121 LLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTY- 179
Query: 425 INKSNITKRFYRQIKKTSIS 444
I S T R + S
Sbjct: 180 IQGSGRTSRLFAGGLTKGAS 199
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 93.9 bits (232), Expect = 6e-23
Identities = 32/235 (13%), Positives = 75/235 (31%), Gaps = 42/235 (17%)
Query: 1 MNFKSI--GLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLP 58
M + + + + L + G + Q +A+ SG++L+++ T +GKT +
Sbjct: 1 MKVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMA 60
Query: 59 ALHKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATE 118
+ + + L + P R LA + + +
Sbjct: 61 MVREA-------------------------------IKGGKSLYVVPLRALAGEKYESFK 89
Query: 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
++ +I + +I++ T + + + + LV+
Sbjct: 90 KWEKIGLRIGIS-----TGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVV 144
Query: 179 DEADRMLDMGFINDIEKIV---DATPVTRQTMLFSATLDGIVGNMAENITKDPLI 230
DE + +E +V + + SAT + +AE + D +
Sbjct: 145 DEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPNVT-EIAEWLDADYYV 198
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 171
Score = 85.1 bits (209), Expect = 4e-20
Identities = 53/154 (34%), Positives = 87/154 (56%), Gaps = 1/154 (0%)
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
K ITQ FV++ K L+ L ++ QA++F + +++A ++ G+ H
Sbjct: 5 KGITQYYAFVEE-RQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSH 63
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
+ Q RN+ R+G+++ LV +D+ RGID+ A+ V N+D PK E Y+HRIGR+
Sbjct: 64 ARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRS 123
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
GR G G A++L+N +R N+ KIE+ +I
Sbjct: 124 GRFGHLGLAINLINWNDRFNLYKIEQELGTEIAA 157
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 81.7 bits (201), Expect = 3e-19
Identities = 32/151 (21%), Positives = 50/151 (33%), Gaps = 21/151 (13%)
Query: 235 SIEKKQKNITQSIL----FVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLN 290
S+ NI + L + L + G+ ++F +K+ D +A +L
Sbjct: 2 SVTVPHPNIEEVALSTTGEIPFYGKAIPL-----EVIKGGRHLIFCHSKKKCDELAAKLV 56
Query: 291 ISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPA---ITHVFNYDLP 347
G A + L + ++VATD G I + P
Sbjct: 57 ALGINAVAYYRGLDVSVIPTN-------GDVVVVATDALMTGFTGDFDSVIDCNTSDGKP 109
Query: 348 KFPEDYVHRIGRTGRAGRNGFAVSLVNHAER 378
+ R GRTGR G+ G V ER
Sbjct: 110 QDAVSRTQRRGRTGR-GKPG-IYRFVAPGER 138
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 79.9 bits (196), Expect = 5e-18
Identities = 28/120 (23%), Positives = 44/120 (36%), Gaps = 5/120 (4%)
Query: 255 HKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLEN 314
+K R L +L R + ++FT I+ I + + R LE
Sbjct: 79 NKIRKLREILERHRKDKIIIFTRHNELVYRISKVFLIPA-----ITHRTSREEREEILEG 133
Query: 315 LRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVN 374
R GR + +V++ V GIDVP +Y+ R+GR R + L
Sbjct: 134 FRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYE 193
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme
UvrB {Bacillus caldotenax [TaxId: 1395]}
Length = 181
Score = 79.1 bits (194), Expect = 8e-18
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 15/168 (8%)
Query: 250 VDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARN 309
+DD++ + R R +R + +V T TK+ A+ + D L +G A LH ++ R
Sbjct: 17 IDDLIGEIRE-----RVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERI 71
Query: 310 RTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR--IGRTGRAGRNG 367
+ +LR G+ +LV ++ G+D+P ++ V D K R I GRA RN
Sbjct: 72 EIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA 131
Query: 368 FAVSLVNHAERMN-----IKKIERFTKQQIPIEVINGFEP---KKRIR 407
++ I++ +R Q +G P KK IR
Sbjct: 132 NGHVIMYADTITKSMEIAIQETKRRRAIQEEYNRKHGIVPRTVKKEIR 179
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia
coli [TaxId: 562]}
Length = 200
Score = 76.2 bits (186), Expect = 9e-17
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 3/151 (1%)
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NI ++ L ++++R +++ ++ + A RL G AA H
Sbjct: 5 PNIRYMLMEKFK---PLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYH 61
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
L N R E +R ++I+VAT GI+ P + V ++D+P+ E Y GR
Sbjct: 62 AGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRA 121
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQ 391
GR G A+ + A+ +++ Q
Sbjct: 122 GRDGLPAEAMLFYDPADMAWLRRCLEEKPQG 152
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme
UvrB {Thermus thermophilus [TaxId: 274]}
Length = 174
Score = 69.0 bits (168), Expect = 2e-14
Identities = 38/161 (23%), Positives = 62/161 (38%), Gaps = 12/161 (7%)
Query: 250 VDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARN 309
+ D++ R R R + +V T R A+ + L G A LH +L R
Sbjct: 17 ILDLMEGIRE-----RAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQ 71
Query: 310 RTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKF-----PEDYVHRIGRTGRAG 364
+ +LR G LV ++ G+D+P ++ V D K + IGR R
Sbjct: 72 ALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA 131
Query: 365 RNGFAVSLVNHAERMN--IKKIERFTKQQIPIEVINGFEPK 403
R + +E M I++ R Q + +G P+
Sbjct: 132 RGEVWLYADRVSEAMQRAIEETNRRRALQEAYNLEHGITPE 172
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 67.2 bits (163), Expect = 1e-13
Identities = 37/184 (20%), Positives = 66/184 (35%), Gaps = 41/184 (22%)
Query: 245 QSILFVDDILHKNRLLDY--LLRD--KRVGQAVVFTATKRDADIIADRLNISGFL----- 295
++ D +R + + L+ + G +VF +T+R A+ A +L+
Sbjct: 12 GTLELFDGAFSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENE 71
Query: 296 -------------------------AAPLHGDLHQNARNRTLENLRRGRIKILVATDVAA 330
AA H L R + RRG IK++VAT A
Sbjct: 72 GLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLA 131
Query: 331 RGIDVPAITHVF-------NYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKK 383
G+++PA + Y +Y GR GR G + +++ +R
Sbjct: 132 AGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIA 191
Query: 384 IERF 387
++R+
Sbjct: 192 VKRY 195
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 66.7 bits (161), Expect = 2e-13
Identities = 38/227 (16%), Positives = 76/227 (33%), Gaps = 37/227 (16%)
Query: 16 LVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKK 75
+++ +P QE + ++ TG GKT M+ A ++
Sbjct: 2 VLRRDLIQPRIYQEVIYAKCK-ETNCLIVLPTGLGKTLIAMMIAEYRLTKYG-------- 52
Query: 76 NLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGG 135
++L+L PT+ L LQ + R +
Sbjct: 53 ----------------------GKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEK 90
Query: 136 MPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEK 195
P R ++++ATP + + + +G+I+ + ++V DEA R + I +
Sbjct: 91 SPEERSKAW--ARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAR 148
Query: 196 IVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
+ +A+ + E I L + IE + +N
Sbjct: 149 EYKRQAKNPLVIGLTASPGSTPEKIMEVINN----LGIEHIEYRSEN 191
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 64.3 bits (155), Expect = 6e-13
Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 2/152 (1%)
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
+ Q + + D KNR L LL Q V+F + + +A L F A +H
Sbjct: 2 LQQYYVKLKDN-EKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRG 60
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q R + + + +ILVAT++ RG+D+ + FNYD+P+ + Y+HR+ R GR
Sbjct: 61 MPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGR 120
Query: 363 AGRNGFAVSLVNHAERMNI-KKIERFTKQQIP 393
G G A++ V+ I ++ + I
Sbjct: 121 FGTKGLAITFVSDENDAKILNDVQDRFEVNIS 152
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 52.3 bits (125), Expect = 4e-08
Identities = 20/142 (14%), Positives = 41/142 (28%), Gaps = 24/142 (16%)
Query: 270 GQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVA 329
F + R A+++A L +G L+ + ++ + ++ATD+A
Sbjct: 37 RPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTI----KQKKPDFILATDIA 92
Query: 330 ARGIDVPAITHVFNYDLPKFPEDY-------------------VHRIGRTGRAGRNGFAV 370
G ++ + V + P R GR GR
Sbjct: 93 EMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDS 151
Query: 371 SLVNHAERMNIKKIERFTKQQI 392
+ N + + +
Sbjct: 152 YYYSEPTSENNAHHVCWLEASM 173
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor,
TRCF {Escherichia coli [TaxId: 562]}
Length = 211
Score = 48.5 bits (115), Expect = 4e-07
Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 1/106 (0%)
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A HG + + R + + R +LV T + GID+P + F +H+
Sbjct: 61 AIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQ 120
Query: 357 I-GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
+ GR GR+ +A L H + M +R ++ GF
Sbjct: 121 LRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFA 166
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 206
Score = 46.3 bits (109), Expect = 2e-06
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR-I 357
+HG L Q ++R + GR ILV+T V GIDVP + + +F +H+
Sbjct: 70 MHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLR 129
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQ 390
GR GR G+ + +V ++++ FT
Sbjct: 130 GRVGRGGQEAYCFLVVGDVGEEAMERLRFFTLN 162
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 346
Score = 33.0 bits (74), Expect = 0.059
Identities = 20/117 (17%), Positives = 43/117 (36%), Gaps = 6/117 (5%)
Query: 256 KNRLLDYLLRDKRV---GQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTL 312
K +LDY+L R + V+ + + D+ +L L G + R + +
Sbjct: 102 KMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIV 161
Query: 313 E---NLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRN 366
E N ++++ G+++ + +D P + + R R G+
Sbjct: 162 ERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQK 218
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 32.0 bits (71), Expect = 0.066
Identities = 9/44 (20%), Positives = 18/44 (40%)
Query: 38 GRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNLNQNN 81
G ++ G+GKT F+ L + A + + V+ +
Sbjct: 7 GMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLS 50
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA,
nucleotide-binding domains {Bacillus subtilis [TaxId:
1423]}
Length = 175
Score = 30.6 bits (69), Expect = 0.22
Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 13/117 (11%)
Query: 267 KRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVAT 326
+V T +++I+ L G L+ H+ E ++G + +AT
Sbjct: 32 MTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKGAV--TIAT 89
Query: 327 DVAARGIDV--------PAITHVFNYDLPKFPEDYVHRIGRTGRAGRNG---FAVSL 372
++A RG D+ V + + GR+GR G G F +S+
Sbjct: 90 NMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSM 146
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 206
Score = 29.5 bits (65), Expect = 0.73
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 28 QEQAIPAAISGRDLIVSSQTGSGKTAAFMLP 58
QE+A+ + + + TGSGKT M
Sbjct: 75 QEKALERWLVDKRGCIVLPTGSGKTHVAMAA 105
>d1v0ea1 b.68.1.2 (A:245-760) Endo-alpha-sialidase {Bacteriophage
K1F [TaxId: 344021]}
Length = 516
Score = 28.1 bits (62), Expect = 2.6
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 399 GFEPKKRIRTYYSRY---RFNNNNWKTHNINKSNITKRFYR 436
P R + Y R R N NNW +I NIT + Y+
Sbjct: 410 AGAPDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQ 450
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme
UvrB {Bacillus caldotenax [TaxId: 1395]}
Length = 413
Score = 27.8 bits (61), Expect = 2.8
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 23 KPTGVQEQAIPAAISG-----RDLIVSSQTGSGKTAAFMLPALHK 62
+P G Q QAI + G + + TG+GKT F + +
Sbjct: 11 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKT--FTISNVIA 53
>d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial
phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]}
Length = 149
Score = 25.9 bits (56), Expect = 7.4
Identities = 11/62 (17%), Positives = 18/62 (29%)
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
N TQ +L V+D LL+ + V + T A +
Sbjct: 4 NATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRP 63
Query: 302 DL 303
+
Sbjct: 64 AV 65
>d1j0sa_ b.42.1.2 (A:) Interleukin-18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 157
Score = 25.5 bits (56), Expect = 9.5
Identities = 10/67 (14%), Positives = 31/67 (46%), Gaps = 10/67 (14%)
Query: 366 NGFAVSLVNHAERMNI----KKIERFTKQQIPIEVINGFEP-----KKRIRTYYSRYRFN 416
G AV++ E+++ KI F + P + I + ++ + + ++ +F
Sbjct: 58 RGMAVTISVKCEKISTLSCENKIISFKEMNPP-DNIKDTKSDIIFFQRSVPGHDNKMQFE 116
Query: 417 NNNWKTH 423
+++++ +
Sbjct: 117 SSSYEGY 123
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.382
Gapped
Lambda K H
0.267 0.0429 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,650,037
Number of extensions: 80719
Number of successful extensions: 357
Number of sequences better than 10.0: 1
Number of HSP's gapped: 325
Number of HSP's successfully gapped: 57
Length of query: 453
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 365
Effective length of database: 1,199,356
Effective search space: 437764940
Effective search space used: 437764940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.3 bits)