BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9401
(453 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|340786652|ref|YP_004752117.1| ATP-dependent RNA helicase [Collimonas fungivorans Ter331]
gi|340551919|gb|AEK61294.1| ATP-dependent RNA helicase [Collimonas fungivorans Ter331]
Length = 468
Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/422 (72%), Positives = 357/422 (84%), Gaps = 3/422 (0%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+S+GLH V+KAL + GYTKPTGVQEQAIPAAI GRDL+VSSQTGSGKTAAFMLPAL
Sbjct: 1 MTFESLGLHTSVIKALTEAGYTKPTGVQEQAIPAAIEGRDLLVSSQTGSGKTAAFMLPAL 60
Query: 61 HKFASSKNKIPVMK-KNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
HKFAS + P K NQ + ER RFKPAQP+MLVLTPTRELALQVT AT++
Sbjct: 61 HKFASEQQVAPAAAGKTPNQEMQASRSRGERPRFKPAQPKMLVLTPTRELALQVTTATDK 120
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
YG +MK++KAISILGGMPY +QMQLL++NPEIL+ATPGRLIDHM SGKI+FS LQILVLD
Sbjct: 121 YGSHMKRVKAISILGGMPYPKQMQLLAKNPEILVATPGRLIDHMESGKIDFSQLQILVLD 180
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIEKIVDATP +RQTMLFSATLDG+VGNMA+ ITK+P+I+++ K
Sbjct: 181 EADRMLDMGFIDDIEKIVDATPESRQTMLFSATLDGVVGNMAKRITKNPMIIQIAGSATK 240
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+NI Q + FVDD+ HKNRLLD+LLRD + QAVVFTATKRDAD IADRLNI+GF AA L
Sbjct: 241 HENIQQKVHFVDDLSHKNRLLDHLLRDVTMDQAVVFTATKRDADTIADRLNIAGFAAAAL 300
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+HQ ARNRTL++LRRG++++LVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR
Sbjct: 301 HGDMHQGARNRTLDSLRRGQVRVLVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 360
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRYRFNNNN 419
TGRAGRNG AVSLVNHAE +N+K+IERFTKQ IP++V+ GFEPK+ S ++
Sbjct: 361 TGRAGRNGVAVSLVNHAEGVNVKRIERFTKQLIPVDVVEGFEPKRSASAPRSNHK--PGG 418
Query: 420 WK 421
WK
Sbjct: 419 WK 420
>gi|152981028|ref|YP_001352892.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
gi|151281105|gb|ABR89515.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
Length = 466
Score = 635 bits (1638), Expect = e-179, Method: Compositional matrix adjust.
Identities = 308/452 (68%), Positives = 361/452 (79%), Gaps = 4/452 (0%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+S+GLH ++KAL + GYT PTGVQ QAIPAAI GRD++VSSQTGSGKTAAFMLPAL
Sbjct: 1 MTFESLGLHASIIKALTESGYTAPTGVQAQAIPAAIEGRDMMVSSQTGSGKTAAFMLPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
HKFAS ++ P K NQ + +R RFKPAQP+MLVLTPTRELALQVT +T++Y
Sbjct: 61 HKFASEGDQ-PQTGKTPNQEAQSARSRGDRPRFKPAQPKMLVLTPTRELALQVTTSTDKY 119
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G +MK++KA+SILGGMPY +QMQLL++NPEIL+ATPGRLIDHM SGKI+FS LQILVLDE
Sbjct: 120 GAFMKRVKAVSILGGMPYPKQMQLLAKNPEILVATPGRLIDHMESGKIDFSQLQILVLDE 179
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DIEKIV ATP RQTMLFSATLDG+VGNMA+ ITKD LI+++ K
Sbjct: 180 ADRMLDMGFIDDIEKIVAATPEGRQTMLFSATLDGMVGNMAKRITKDALIIQIAGSATKH 239
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+NI Q + FVDD+ HKNR+LD+LLRD+ + QAVVFTATKRDAD IADRLNI+GF AA LH
Sbjct: 240 ENIKQCVHFVDDLSHKNRMLDHLLRDETMDQAVVFTATKRDADTIADRLNIAGFAAAALH 299
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+HQ ARNRTL+ LRRG+I++LVATDVAARGIDVP ITHV NYDLPKFPEDYVHRIGRT
Sbjct: 300 GDMHQGARNRTLDGLRRGQIRVLVATDVAARGIDVPGITHVVNYDLPKFPEDYVHRIGRT 359
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRYRFNNNNW 420
GRAGRNG AVSLVNHAE MN+K+IERF KQ IP+EVI GFEPK+ S ++ W
Sbjct: 360 GRAGRNGIAVSLVNHAESMNVKRIERFIKQLIPVEVIEGFEPKRSASAPRSNHK--PGGW 417
Query: 421 KTHNINKSNITKRFYRQIKKTSISASSKNSIN 452
K + N+ N K R K + +S N
Sbjct: 418 KPGD-NRGNTAKPGQRTFSKPNAPRKDGSSFN 448
>gi|134095506|ref|YP_001100581.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
gi|133739409|emb|CAL62459.1| Putative ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
Length = 468
Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust.
Identities = 307/454 (67%), Positives = 362/454 (79%), Gaps = 7/454 (1%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+S+GLH ++KAL + GYT PTGVQ QAIPAAI GRD++VSSQTGSGKTAAFMLPAL
Sbjct: 1 MTFESLGLHASIIKALTESGYTAPTGVQAQAIPAAIEGRDMMVSSQTGSGKTAAFMLPAL 60
Query: 61 HKFA-SSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
HKFA S+ + P + NQ + +R RFK AQP+MLVLTPTRELALQVT +T++
Sbjct: 61 HKFAVQSEQQQPEGGRTPNQEAQSARSRGDRPRFKAAQPKMLVLTPTRELALQVTTSTDK 120
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
YG +MK++KA+SILGGMPY +QMQLL++NPEIL+ATPGRLIDHM SGKI+FS LQILVLD
Sbjct: 121 YGAFMKRVKAVSILGGMPYPKQMQLLAKNPEILVATPGRLIDHMESGKIDFSELQILVLD 180
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIEKIV ATP RQTMLFSATLDG VG MA+ ITKDPL++++ K
Sbjct: 181 EADRMLDMGFIDDIEKIVAATPEGRQTMLFSATLDGTVGTMAKRITKDPLVIQIAGSATK 240
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+NI Q + FVDD+ HKNRLLD+LLRD+ + QAVVFTATKRDAD IADRLNI+GF AA L
Sbjct: 241 HENIKQGVHFVDDLSHKNRLLDHLLRDETMDQAVVFTATKRDADTIADRLNIAGFAAAAL 300
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+HQ ARNRTL+ LRRG+I++LVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR
Sbjct: 301 HGDMHQGARNRTLDGLRRGQIRVLVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 360
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRYRFNNNN 419
TGRAGRNG AVSLVNHAE MN+K+IERF KQ IP+ VI GFEPK+ S ++
Sbjct: 361 TGRAGRNGIAVSLVNHAEGMNVKRIERFIKQLIPVSVIEGFEPKRTASAPRSNHK--PGG 418
Query: 420 WKTHNINKSNITKRFYRQIKKTSISASSKNSINY 453
WK + N+ N K R K + +++N Y
Sbjct: 419 WKPGD-NRGNAAKPGQRTFSKPN---ATRNEGGY 448
>gi|329900791|ref|ZP_08272595.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
gi|327549380|gb|EGF33948.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
Length = 468
Score = 629 bits (1621), Expect = e-177, Method: Compositional matrix adjust.
Identities = 301/422 (71%), Positives = 352/422 (83%), Gaps = 3/422 (0%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+++GLH V+KAL + GY KPT VQEQAIPAAI GRDL+VSSQTGSGKTAAFMLPAL
Sbjct: 1 MTFEALGLHTSVIKALTESGYIKPTSVQEQAIPAAIEGRDLLVSSQTGSGKTAAFMLPAL 60
Query: 61 HKFASSKN-KIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
HKFA++ ++ K NQ ER RFK AQP+MLVLTPTRELALQVT AT++
Sbjct: 61 HKFATAAELQLADSSKTPNQEKQSALARGERPRFKAAQPKMLVLTPTRELALQVTTATDK 120
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
YG M++IKA+SILGGMPY +QMQLL++NPEIL+ATPGRLIDHM SGKI+FS L+ILVLD
Sbjct: 121 YGSQMRRIKAVSILGGMPYPKQMQLLAKNPEILVATPGRLIDHMESGKIDFSQLEILVLD 180
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIEKIV ATP +RQTMLFSATLDG+VGNMA+ ITK+P+I+++ K
Sbjct: 181 EADRMLDMGFIDDIEKIVAATPESRQTMLFSATLDGVVGNMAKRITKNPMIIQIAGSATK 240
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+NI+Q + FVDD+ HKNRLLD+LLRD+ + QAVVFTATKRDAD IADRLNI+GF AA L
Sbjct: 241 HENISQRVHFVDDLSHKNRLLDHLLRDETMDQAVVFTATKRDADTIADRLNIAGFAAAAL 300
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+HQ ARNRTL+ +RRG++++LVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR
Sbjct: 301 HGDMHQGARNRTLDGMRRGQVRVLVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 360
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRYRFNNNN 419
TGRAGRNG AVSLVNHAE +N+K+IERFTKQ IP+EVI GFEPKK S +
Sbjct: 361 TGRAGRNGIAVSLVNHAEGINVKRIERFTKQLIPVEVIEGFEPKKTASAPRSGQK--PGG 418
Query: 420 WK 421
WK
Sbjct: 419 WK 420
>gi|395763064|ref|ZP_10443733.1| ATP-dependent RNA helicase [Janthinobacterium lividum PAMC 25724]
Length = 468
Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust.
Identities = 298/421 (70%), Positives = 345/421 (81%), Gaps = 4/421 (0%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+S+GLH ++ AL + GYT PT VQ QAIPAAI GRDL+VSSQTGSGKTAAFMLP+L
Sbjct: 1 MTFESLGLHPSIIAALTESGYTAPTAVQSQAIPAAIEGRDLLVSSQTGSGKTAAFMLPSL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
HK AS++ K NQ ER RFK AQP+MLVLTPTRELALQVT T++Y
Sbjct: 61 HKLASAEQS--AAGKTPNQEMQASRARGERPRFKAAQPKMLVLTPTRELALQVTTNTDKY 118
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
+++IKA+SILGGMPY +QMQLL++NPEIL+ATPGRLIDHM+SGKI+FS L+ILVLDE
Sbjct: 119 SSGIRRIKAVSILGGMPYPKQMQLLAKNPEILVATPGRLIDHMDSGKIDFSQLEILVLDE 178
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DIEKIV+ATP RQTMLFSATLDG+VGNMA ITK+PL+++V S K
Sbjct: 179 ADRMLDMGFIDDIEKIVEATPEGRQTMLFSATLDGVVGNMARRITKNPLVIQVASSSNKH 238
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+NITQ + FVDD+ HKNRLLD+LLRD+ + QAVVFTATKRDAD IADRLNI+GF AA LH
Sbjct: 239 ENITQRVHFVDDLSHKNRLLDHLLRDETLDQAVVFTATKRDADTIADRLNIAGFSAAALH 298
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+HQ ARNRTL+ +RRG++K+LVATDVAARGIDVP ITHVFNYDLPKFPEDYVHRIGRT
Sbjct: 299 GDMHQGARNRTLDGMRRGQVKVLVATDVAARGIDVPTITHVFNYDLPKFPEDYVHRIGRT 358
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRYRFNNNNW 420
GRAGRNG A+SLVNHAE MN+K+IERFTKQ IP+ VI GFEPKK S R W
Sbjct: 359 GRAGRNGLAISLVNHAEGMNVKRIERFTKQLIPVNVIEGFEPKKTASAPRSSAR--PGGW 416
Query: 421 K 421
K
Sbjct: 417 K 417
>gi|399019649|ref|ZP_10721795.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. CF444]
gi|398097540|gb|EJL87844.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. CF444]
Length = 477
Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust.
Identities = 292/404 (72%), Positives = 341/404 (84%), Gaps = 1/404 (0%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+++GLH ++KAL GYT PT VQEQAIPAAI+G+DL+VSSQTGSGKTAAFMLP+L
Sbjct: 1 MTFETLGLHPSIIKALTDSGYTAPTPVQEQAIPAAIAGKDLLVSSQTGSGKTAAFMLPSL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
HKFAS P K NQ +R RF+PAQP+MLVLTPTRELALQVT AT++Y
Sbjct: 61 HKFASMPPAAP-GAKTPNQEAQAAKARGDRPRFRPAQPKMLVLTPTRELALQVTTATDKY 119
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
+M+++KA+SILGGMPY +QMQLLSRNPEIL+ATPGRLIDHM+SGKI+FS L+ILVLDE
Sbjct: 120 CAHMRRLKAVSILGGMPYPKQMQLLSRNPEILVATPGRLIDHMDSGKIDFSELEILVLDE 179
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DIEKIV ATP TRQTMLFSATLDG+VGNMA+ IT P I+++ K
Sbjct: 180 ADRMLDMGFIEDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNAPQIIQIAGSATKH 239
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+NI Q + FVDD+ HKNRLLD+LLRD + QAVVFTATKRDAD IADRLNI+GF AA LH
Sbjct: 240 ENIAQRVHFVDDLSHKNRLLDFLLRDVTMDQAVVFTATKRDADTIADRLNIAGFAAAALH 299
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+HQ ARNRTL+ +RRG++++LVATDVAARGIDVP ITHVFNYDLPKFPEDYVHRIGRT
Sbjct: 300 GDMHQGARNRTLDGMRRGQVRVLVATDVAARGIDVPGITHVFNYDLPKFPEDYVHRIGRT 359
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRAGRNG AVSLVNHAE M++K+IERFTKQ IP++V+ G+EPKK
Sbjct: 360 GRAGRNGVAVSLVNHAEGMHVKRIERFTKQPIPVDVVEGYEPKK 403
>gi|409407228|ref|ZP_11255679.1| ATP-dependent RNA helicase [Herbaspirillum sp. GW103]
gi|386432979|gb|EIJ45805.1| ATP-dependent RNA helicase [Herbaspirillum sp. GW103]
Length = 508
Score = 612 bits (1579), Expect = e-173, Method: Compositional matrix adjust.
Identities = 293/434 (67%), Positives = 351/434 (80%), Gaps = 5/434 (1%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+++GL+ ++KAL + GYT PT VQE+AIPAAISG+DL+VSSQTGSGKTAAFMLP+L
Sbjct: 1 MTFEALGLNPSIIKALTEAGYTSPTPVQEKAIPAAISGQDLLVSSQTGSGKTAAFMLPSL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ A + P + NQ ER R++PAQP+MLVLTPTRELALQVT AT++Y
Sbjct: 61 HQLADLP-QAPQAARTPNQERQASRARGERPRYQPAQPKMLVLTPTRELALQVTTATDKY 119
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G YM++++ +SILGGMPY +QMQLLSRNPEIL+ATPGRLIDHM SGKI+FS LQILVLDE
Sbjct: 120 GAYMRRVRVVSILGGMPYPKQMQLLSRNPEILVATPGRLIDHMESGKIDFSQLQILVLDE 179
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DIEKIV ATP TRQTMLFSATLDG+VGNMA+ IT +PL +++ S +
Sbjct: 180 ADRMLDMGFIDDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNNPLTIQIASSSTRH 239
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+NI Q + FVDD+ HKNRLLD+LLRD + QAV+FTATKRDAD IADRLNI+GF AA LH
Sbjct: 240 ENIMQRVHFVDDLSHKNRLLDHLLRDTSIDQAVIFTATKRDADTIADRLNIAGFAAAALH 299
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+HQ ARNRTL +LRRG++++LVATDVAARGIDVP ITHVFNYDLPKF EDYVHRIGRT
Sbjct: 300 GDMHQGARNRTLNSLRRGQVRMLVATDVAARGIDVPGITHVFNYDLPKFAEDYVHRIGRT 359
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRYRFNNNNW 420
GRAGRNG A+SLVNHAE M +K+IERFTKQ IP++V+ GFEPKK + R W
Sbjct: 360 GRAGRNGVAISLVNHAEGMQVKRIERFTKQTIPVDVVEGFEPKK---SAAPRSPRKPGGW 416
Query: 421 KTHNINKSNITKRF 434
+ + +SN RF
Sbjct: 417 RPGD-GRSNSGPRF 429
>gi|300312721|ref|YP_003776813.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1]
gi|300075506|gb|ADJ64905.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae
SmR1]
Length = 510
Score = 609 bits (1570), Expect = e-171, Method: Compositional matrix adjust.
Identities = 292/434 (67%), Positives = 350/434 (80%), Gaps = 5/434 (1%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+++GL+ ++KAL + GYT PT VQE+AIPAAISG+DL+VSSQTGSGKTAAFMLP+L
Sbjct: 1 MTFEALGLNPSIIKALTEAGYTSPTPVQEKAIPAAISGQDLLVSSQTGSGKTAAFMLPSL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ A P + NQ ER R++PAQP+MLVLTPTRELALQVT AT++Y
Sbjct: 61 HQLADLP-PAPQAARTPNQERQASRARGERPRYQPAQPKMLVLTPTRELALQVTTATDKY 119
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G YM++++ +SILGGMPY +QMQLLSRNPEIL+ATPGRLIDHM SGKI+FS LQILVLDE
Sbjct: 120 GAYMRRVRVVSILGGMPYPKQMQLLSRNPEILVATPGRLIDHMESGKIDFSQLQILVLDE 179
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DIEKIV ATP TRQTMLFSATLDG+VGNMA+ IT +PL +++ S +
Sbjct: 180 ADRMLDMGFIDDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNNPLTIQIASSSTRH 239
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+NI Q + FVDD+ HKNRLLD+LLRD + QAV+FTATKRDAD IADRLNI+GF AA LH
Sbjct: 240 ENIMQRVHFVDDLSHKNRLLDHLLRDTSIDQAVIFTATKRDADTIADRLNIAGFAAAALH 299
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+HQ ARNRTL +LRRG++++LVATDVAARGIDVP ITHVFNYDLPKF EDYVHRIGRT
Sbjct: 300 GDMHQGARNRTLNSLRRGQVRMLVATDVAARGIDVPGITHVFNYDLPKFAEDYVHRIGRT 359
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRYRFNNNNW 420
GRAGRNG A+SLVNHAE M +K+IERFTKQ IP++V+ GFEPKK + R W
Sbjct: 360 GRAGRNGVAISLVNHAEGMQVKRIERFTKQTIPVDVVEGFEPKK---SAAPRSPRKPGGW 416
Query: 421 KTHNINKSNITKRF 434
+ + +SN R+
Sbjct: 417 RPGD-GRSNNGPRY 429
>gi|445496067|ref|ZP_21463111.1| ATP-dependent RNA helicase RhlE [Janthinobacterium sp. HH01]
gi|444792228|gb|ELX13775.1| ATP-dependent RNA helicase RhlE [Janthinobacterium sp. HH01]
Length = 477
Score = 607 bits (1566), Expect = e-171, Method: Compositional matrix adjust.
Identities = 294/421 (69%), Positives = 345/421 (81%), Gaps = 4/421 (0%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+++GL+ ++KAL GYT PT VQ+QAIPAAI+G+DL+VSSQTGSGKTAAFMLP+L
Sbjct: 11 MTFEALGLNTSIIKALTDAGYTAPTPVQQQAIPAAIAGKDLLVSSQTGSGKTAAFMLPSL 70
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ S+ K NQ ER RFK AQP+MLVLTPTRELALQVT T++Y
Sbjct: 71 HRL--SEIDPAAAGKTPNQEMQAARARGERPRFKAAQPKMLVLTPTRELALQVTTNTDKY 128
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
+ +++IKA+SILGGMPY +QMQLL++NPEIL+ATPGRLIDHM SGKI+FS L+ILVLDE
Sbjct: 129 SVNLRRIKAVSILGGMPYPKQMQLLAKNPEILVATPGRLIDHMESGKIDFSQLEILVLDE 188
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DIEKIV+ATP TRQTMLFSATLDG+VGNMA ITK+P I+++ S K
Sbjct: 189 ADRMLDMGFIDDIEKIVEATPSTRQTMLFSATLDGVVGNMARRITKEPQIIQIVSAANKH 248
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+NITQ + FVDD+ HKNRLLD+LLRD + QAVVFTATKRDAD IADRLNI+GF AA LH
Sbjct: 249 ENITQRVHFVDDLSHKNRLLDHLLRDDSLDQAVVFTATKRDADTIADRLNIAGFSAAALH 308
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+HQ ARNRTL++LRRG++KIL+ATDVAARGIDVP ITHVFNYDLPKFPEDYVHRIGRT
Sbjct: 309 GDMHQGARNRTLDSLRRGQVKILIATDVAARGIDVPTITHVFNYDLPKFPEDYVHRIGRT 368
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRYRFNNNNW 420
GRAGRNG A+SLVNHAE MN+K+IERFTKQ IP+ VI G+EPKK S R W
Sbjct: 369 GRAGRNGLAISLVNHAEGMNVKRIERFTKQLIPVNVIEGYEPKKTASASRSSPR--PGGW 426
Query: 421 K 421
K
Sbjct: 427 K 427
>gi|415939512|ref|ZP_11555529.1| ATP-dependent RNA helicase, partial [Herbaspirillum frisingense
GSF30]
gi|407759311|gb|EKF69022.1| ATP-dependent RNA helicase, partial [Herbaspirillum frisingense
GSF30]
Length = 397
Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust.
Identities = 281/398 (70%), Positives = 335/398 (84%), Gaps = 1/398 (0%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+++GL+ ++KAL + GYT PT VQE+AIPAAISG+DL+VSSQTGSGKTAAFMLP+L
Sbjct: 1 MTFEALGLNPSIIKALTEAGYTSPTPVQEKAIPAAISGQDLLVSSQTGSGKTAAFMLPSL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ A + P + NQ ER R++PAQP+MLVLTPTRELALQVT AT++Y
Sbjct: 61 HQLADLP-QAPQAARTPNQERQATRARGERPRYQPAQPKMLVLTPTRELALQVTTATDKY 119
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G YM++++ +SILGGMPY +QMQLLSRNPEIL+ATPGRLIDHM SGKI+FS LQILVLDE
Sbjct: 120 GSYMRRVRVVSILGGMPYPKQMQLLSRNPEILVATPGRLIDHMESGKIDFSQLQILVLDE 179
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DIEKIV ATP TRQTMLFSATLDG+VGNMA+ IT +PL +++ S +
Sbjct: 180 ADRMLDMGFIDDIEKIVAATPTTRQTMLFSATLDGVVGNMAKRITNNPLTIQIASSSTRH 239
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+NI Q + FVDD+ HKNRLLD+LLRD + QAV+FTATKRDAD IADRLNI+GF AA LH
Sbjct: 240 ENIMQRVHFVDDLSHKNRLLDHLLRDTSIDQAVIFTATKRDADTIADRLNIAGFAAAALH 299
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+HQ ARNRTL +LRRG++++LVATDVAARGIDVP ITHVFNYDLPKF EDYVHRIGRT
Sbjct: 300 GDMHQGARNRTLNSLRRGQVRMLVATDVAARGIDVPGITHVFNYDLPKFAEDYVHRIGRT 359
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVIN 398
GRAGRNG A+SLVNHAE M +K+IERFTKQ IP++V+
Sbjct: 360 GRAGRNGVAISLVNHAEGMQVKRIERFTKQTIPVDVVE 397
>gi|398832639|ref|ZP_10590796.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. YR522]
gi|398222976|gb|EJN09332.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. YR522]
Length = 502
Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust.
Identities = 288/431 (66%), Positives = 344/431 (79%), Gaps = 4/431 (0%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+++GL+ ++KAL + GYT PT VQE+AIPAAI+G+DL+VSSQTGSGKTAAFMLP+L
Sbjct: 1 MTFEALGLNPSIIKALTEAGYTVPTPVQEKAIPAAIAGQDLLVSSQTGSGKTAAFMLPSL 60
Query: 61 HKFAS--SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATE 118
HK A + + NQ + ER RF PAQP+MLVLTPTRELALQVT AT+
Sbjct: 61 HKLAELPQAAEGAGAARTPNQERQASRSRGERPRFTPAQPKMLVLTPTRELALQVTTATD 120
Query: 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+YG YM++++ +SILGGMPY +QMQLLS+NPEIL+ATPGRLIDHM SGKI+FS LQILVL
Sbjct: 121 KYGSYMRRVRVVSILGGMPYPKQMQLLSKNPEILVATPGRLIDHMESGKIDFSQLQILVL 180
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI+DIEKIV ATP TRQTMLFSATLDG+VGNMA+ IT +P +++
Sbjct: 181 DEADRMLDMGFIDDIEKIVAATPDTRQTMLFSATLDGVVGNMAKRITNNPATIQIAGSAT 240
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ +NI Q + FVDD+ HKNRLLD+LLRD + QAVVFTATKRDAD IADRLNI GF AA
Sbjct: 241 RHENIMQRVHFVDDLSHKNRLLDHLLRDVTMDQAVVFTATKRDADTIADRLNIGGFAAAA 300
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
LHGD+HQ ARNRTL +LRRG++++LVATDVAARGIDVP ITHVFNYDLPKF EDYVHRIG
Sbjct: 301 LHGDMHQGARNRTLNSLRRGQVRVLVATDVAARGIDVPGITHVFNYDLPKFAEDYVHRIG 360
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRYRFNNN 418
RTGRAGR G A+SLVNHAE M++K+IERFTKQ IP++V+ G EPKK SR
Sbjct: 361 RTGRAGRKGVAISLVNHAEGMHVKRIERFTKQSIPVDVVEGHEPKK--TASASRSPRKPG 418
Query: 419 NWKTHNINKSN 429
NW+ + +N
Sbjct: 419 NWRPGDGRSNN 429
>gi|237748776|ref|ZP_04579256.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
gi|229380138|gb|EEO30229.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
Length = 465
Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust.
Identities = 280/437 (64%), Positives = 343/437 (78%), Gaps = 11/437 (2%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+++GLH L+ KAL + Y KPT VQE+AIPA I G+DL+VSSQTGSGKTAAFMLPAL
Sbjct: 1 MTFEALGLHPLIQKALADIHYDKPTPVQEKAIPAGIEGKDLLVSSQTGSGKTAAFMLPAL 60
Query: 61 HKFASSKNKIPVMK---KNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAAT 117
H+FAS +P K K NQ E++R++PA P+MLVLTPTRELA+Q+ ++
Sbjct: 61 HRFAS----VPFEKSDKKTFNQKRQAARAKGEKVRYEPAHPKMLVLTPTRELAMQIVQSS 116
Query: 118 ERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
E Y Y+K + ++ILGGMPY +QMQLL++NPEIL+ATPGRLIDHM+SGKI F L+ILV
Sbjct: 117 EDYSAYLKHFRTVAILGGMPYPKQMQLLAKNPEILVATPGRLIDHMHSGKIRFDQLEILV 176
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
LDEADRMLDMGFI+DIE I+ ATP TRQTMLFSATLDGIVGNMA IT+DP ++ ++S+
Sbjct: 177 LDEADRMLDMGFIDDIETIIAATPETRQTMLFSATLDGIVGNMARKITRDPELIHIHSVA 236
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+ +NI Q I FVDD+ HKNRLLD+LL D+ + QA+VFTATKRDADI+ADRL I+GF AA
Sbjct: 237 SRHENIDQMIHFVDDLPHKNRLLDHLLHDRSLDQALVFTATKRDADIVADRLAIAGFSAA 296
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
LHGD+ Q ARNRTL LRRG++KILVATDVAARGID+P ITHV NYDLPKFPEDYVHRI
Sbjct: 297 ALHGDMPQGARNRTLTKLRRGQVKILVATDVAARGIDIPNITHVVNYDLPKFPEDYVHRI 356
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRYRFNN 417
GRTGRAGR+G A+SLVNH + N++KIERFTKQ IP+ VI GFEPK + S+ +
Sbjct: 357 GRTGRAGRHGLAISLVNHNDNNNVRKIERFTKQSIPVNVIEGFEPKLSFKAAPSKRK--P 414
Query: 418 NNWKTHNINKSNITKRF 434
+ WK +K N + +F
Sbjct: 415 SGWKPG--SKRNASPKF 429
>gi|257091933|ref|YP_003165574.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257044457|gb|ACV33645.1| DEAD/DEAH box helicase domain protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 474
Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust.
Identities = 274/405 (67%), Positives = 332/405 (81%), Gaps = 2/405 (0%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
MNF IGLH +LKAL GY++PT VQ+QAIP AI GRDL+VSSQTGSGKTAAFMLPAL
Sbjct: 1 MNFAEIGLHPAILKALTDSGYSEPTPVQQQAIPPAIEGRDLMVSSQTGSGKTAAFMLPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+FA + V + + + + H +R RF+ AQPRMLVLTPTRELALQVTAATE+Y
Sbjct: 61 HRFALQERPAAVPRPS-ERGAARPRGH-DRQRFQAAQPRMLVLTPTRELALQVTAATEKY 118
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G + ++A++ILGGMPY +QM+LL RNPEIL+ATPGRLIDHM+SGKI+FS LQILVLDE
Sbjct: 119 GRQLHHVRAVAILGGMPYPKQMELLGRNPEILVATPGRLIDHMSSGKIDFSQLQILVLDE 178
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DIE+IV ATP +RQT+LFSATLDG VG +A+ +T+ L ++V++ +
Sbjct: 179 ADRMLDMGFIEDIERIVAATPGSRQTLLFSATLDGTVGELAQRMTRAALRIQVDATSARH 238
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NI Q + FVDD+ HKNRLLD+LLRD + QA+VFTATKRDAD ++DRLN++G AA LH
Sbjct: 239 DNIEQRMHFVDDLAHKNRLLDHLLRDATIDQALVFTATKRDADTVSDRLNVAGLNAAALH 298
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+HQ ARNRTL +RRG+++ILVATDVAARGIDVP ITHVFNYDLPKF EDYVHRIGRT
Sbjct: 299 GDMHQGARNRTLAAMRRGQVRILVATDVAARGIDVPTITHVFNYDLPKFAEDYVHRIGRT 358
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
GRAGRNG A+SLV+HAE N++KIERFTKQ IP+E++ G EP +R
Sbjct: 359 GRAGRNGLAISLVHHAEHFNVRKIERFTKQPIPVEIVIGHEPTRR 403
>gi|427403697|ref|ZP_18894579.1| hypothetical protein HMPREF9710_04175 [Massilia timonae CCUG 45783]
gi|425717680|gb|EKU80636.1| hypothetical protein HMPREF9710_04175 [Massilia timonae CCUG 45783]
Length = 539
Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust.
Identities = 284/403 (70%), Positives = 338/403 (83%), Gaps = 2/403 (0%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+++GLH +++A+ GYT PT VQ QAIPAAI+ RDL+VSSQTGSGKTAAFMLPAL
Sbjct: 10 MSFEALGLHASIVQAVADTGYTNPTPVQAQAIPAAIARRDLLVSSQTGSGKTAAFMLPAL 69
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H A+++ K Q ER+RFKPAQP+MLVLTPTRELALQVT+ T++Y
Sbjct: 70 HHLANAEPA--PAGKTPAQEAQAARARGERVRFKPAQPKMLVLTPTRELALQVTSNTDKY 127
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
+M++++ +SILGGMPY +QMQLL++NPEIL+ATPGRLIDHM SGKI+FS L+ILVLDE
Sbjct: 128 TAHMRRVRCVSILGGMPYPKQMQLLAKNPEILVATPGRLIDHMESGKIDFSQLEILVLDE 187
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DIEKIV ATP TRQTMLFSATLDG+VGNMA IT DPL +++ S +
Sbjct: 188 ADRMLDMGFIDDIEKIVAATPSTRQTMLFSATLDGVVGNMARRITSDPLTIQIASATNRH 247
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+NI Q + FVDD+ HKNRLLD+LLRD+ + QAVVFTATKRDAD+IADRLNI+GF AA LH
Sbjct: 248 ENIVQRVHFVDDLSHKNRLLDHLLRDETLDQAVVFTATKRDADMIADRLNIAGFAAAALH 307
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+HQ ARNRTL++LRRG +K+LVATDVAARGIDVP ITHV NYDLPKFPEDYVHRIGRT
Sbjct: 308 GDMHQGARNRTLDSLRRGSVKVLVATDVAARGIDVPNITHVVNYDLPKFPEDYVHRIGRT 367
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPK 403
GRAGRNG A+SLVNHAE MNI++IERFT+Q IP+ VI GFEPK
Sbjct: 368 GRAGRNGTAISLVNHAENMNIRRIERFTRQPIPVNVIEGFEPK 410
>gi|237746640|ref|ZP_04577120.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS]
gi|229377991|gb|EEO28082.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS]
Length = 461
Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust.
Identities = 270/421 (64%), Positives = 327/421 (77%), Gaps = 2/421 (0%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+++GLH +LKAL + Y PT VQ +AIP AI G+DL+VSSQTGSGKTAAFMLPAL
Sbjct: 1 MTFETLGLHPSILKALAGIHYDIPTPVQTKAIPLAIEGKDLLVSSQTGSGKTAAFMLPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+FA+ K +K NQ ER RFK AQP+MLVLTPTRELALQ+ ++TE+Y
Sbjct: 61 HRFATQKIS-ETSQKTPNQQRQSAKAKGERARFKAAQPKMLVLTPTRELALQIVSSTEQY 119
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
+K + ++ILGGMPY +QMQLL+RNPEIL+ATPGRLIDHM SGKI F L+ILVLDE
Sbjct: 120 SACLKHFRTVAILGGMPYPKQMQLLARNPEILVATPGRLIDHMQSGKIRFDQLEILVLDE 179
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DIE ++ ATP TRQTMLFSATLDGIVG MA ++T D + + S +
Sbjct: 180 ADRMLDMGFIDDIETVIAATPATRQTMLFSATLDGIVGKMARSVTHDAESIHITSSASRH 239
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+NI Q I +VDD+ HKNRLL + L+D+ +GQA+VFTATKRDAD++ADRL I+GF A LH
Sbjct: 240 ENIEQMIHYVDDLPHKNRLLAHWLQDRSLGQALVFTATKRDADLVADRLAIAGFSTAALH 299
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+ QNARNRTL LR G++KILVATDVAARGID+P+ITHVFNYDLPKFPEDYVHRIGRT
Sbjct: 300 GDMPQNARNRTLAKLRDGKVKILVATDVAARGIDIPSITHVFNYDLPKFPEDYVHRIGRT 359
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRYRFNNNNW 420
GRAGR+G A+SLV+H++ ++K+IERFTKQ IP+ VI GFEPK R R W
Sbjct: 360 GRAGRHGLAISLVSHSDSASMKRIERFTKQTIPVNVIEGFEPKMTFRPTAPSKR-GKPGW 418
Query: 421 K 421
K
Sbjct: 419 K 419
>gi|421870283|ref|ZP_16301918.1| ATP-dependent RNA helicase NGO0650 [Burkholderia cenocepacia H111]
gi|358069809|emb|CCE52796.1| ATP-dependent RNA helicase NGO0650 [Burkholderia cenocepacia H111]
Length = 514
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 239/407 (58%), Positives = 311/407 (76%), Gaps = 10/407 (2%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F S+GL ++ AL GY KPT VQ++AIPA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 37 SFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 96
Query: 62 KFAS---SKNKIPVMKKNLNQNNNKIYTHKERLRFKP-AQPRMLVLTPTRELALQVTAAT 117
+FA ++ + P + NQ + + R +P A+P +LVLTPTRELA+QVT A
Sbjct: 97 RFAQLQKTQAQQPRAPREPNQGDRRAR------RPQPVARPGLLVLTPTRELAMQVTTAA 150
Query: 118 ERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
YG ++K+++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRL+DH+ G+I+ S L++LV
Sbjct: 151 STYGKHLKRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLV 210
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
LDEADRMLDMGFI DIE IVDATP TRQTMLFSATLDG +G++ + KDP +++
Sbjct: 211 LDEADRMLDMGFIEDIETIVDATPDTRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRL 270
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+ + NI Q++ +VDD HK+RLLD+LLRD + QA++FTATK DAD +A RL +GF +A
Sbjct: 271 ESRANIAQTVHYVDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESA 330
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRI
Sbjct: 331 ALHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRI 390
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRTGRAGR+G AVSLV+HAE+ +K+IERF + +P+ VI GFEP+K
Sbjct: 391 GRTGRAGRSGIAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEPRK 437
>gi|107028773|ref|YP_625868.1| DEAD/DEAH box helicase-like [Burkholderia cenocepacia AU 1054]
gi|116690068|ref|YP_835691.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
cenocepacia HI2424]
gi|105897937|gb|ABF80895.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
1054]
gi|116648157|gb|ABK08798.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
HI2424]
Length = 516
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 237/407 (58%), Positives = 311/407 (76%), Gaps = 10/407 (2%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F S+GL ++ AL GY KPT VQ++AIPA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 37 SFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 96
Query: 62 KFAS---SKNKIPVMKKNLNQNNNKIYTHKERLRFKP-AQPRMLVLTPTRELALQVTAAT 117
+FA ++ + P + NQ + ++ R +P A+P +LVLTPTRELA+QVT A
Sbjct: 97 RFAQLQKTQAQQPRAPREPNQGDRRVR------RPQPVARPGLLVLTPTRELAMQVTTAA 150
Query: 118 ERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
YG ++K+++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRL+DH+ G+I+ S L++LV
Sbjct: 151 STYGKHLKRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLV 210
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
LDEADRMLDMGFI DIE IV ATP +RQTMLFSATLDG +G++ + KDP +++
Sbjct: 211 LDEADRMLDMGFIEDIETIVAATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRL 270
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+ + NI Q++ +VDD HK+RLLD+LLRD + QA++FTATK DAD +A RL +GF +A
Sbjct: 271 ESRANIAQTVHYVDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESA 330
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRI
Sbjct: 331 ALHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRI 390
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRTGRAGR+G AVSLV+HAE+ +K+IERF + +P+ VI GFEP+K
Sbjct: 391 GRTGRAGRSGIAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEPRK 437
>gi|170696489|ref|ZP_02887614.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
gi|170138592|gb|EDT06795.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
Length = 537
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 240/406 (59%), Positives = 308/406 (75%), Gaps = 9/406 (2%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F S+GL V+ AL GY PT VQ++A+PAAI+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 51 SFASLGLSADVVSALTAAGYQNPTPVQQRAVPAAIAGRDLMVSSPTGSGKTAAFMLPAIE 110
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKP---AQPRMLVLTPTRELALQVTAATE 118
+F+ + K +Q R +P A+P MLVLTPTRELA+QVT A
Sbjct: 111 RFSQ------LQKAQASQPREPRPADGARNTRRPQPVARPTMLVLTPTRELAMQVTTAAA 164
Query: 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
YG ++K+++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRLIDH+ G+I+ S LQILVL
Sbjct: 165 TYGKHLKRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVL 224
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI DIE IV ATP TRQTMLFSATLDG +G++ + KDP +++ +
Sbjct: 225 DEADRMLDMGFIEDIETIVAATPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIVQRLE 284
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
++ NI Q++ +VDD HK+RLLD+LLRD+ + QA+VFTATK DAD +A RL +GF +A
Sbjct: 285 QRTNIAQTVHYVDDRDHKDRLLDHLLRDEGLDQAIVFTATKMDADQLAGRLADAGFESAA 344
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
LHGDL Q ARNRT++ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRIG
Sbjct: 345 LHGDLPQGARNRTIKALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 404
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
RTGRAGR+G AVSLV+HAE+ +K+IERF + +P+ V+ GFEP+K
Sbjct: 405 RTGRAGRSGIAVSLVHHAEQGALKRIERFVRTPLPVNVVVGFEPRK 450
>gi|206560480|ref|YP_002231244.1| putative ATP-dependent RNA helicase [Burkholderia cenocepacia
J2315]
gi|444365702|ref|ZP_21165823.1| DEAD/DEAH box helicase [Burkholderia cenocepacia K56-2Valvano]
gi|198036521|emb|CAR52418.1| putative ATP-dependent RNA helicase [Burkholderia cenocepacia
J2315]
gi|443605756|gb|ELT73582.1| DEAD/DEAH box helicase [Burkholderia cenocepacia K56-2Valvano]
Length = 514
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 238/407 (58%), Positives = 309/407 (75%), Gaps = 10/407 (2%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F S+GL ++ AL GY KPT VQ++AIP I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 37 SFASLGLSPEIVSALQAAGYVKPTPVQQRAIPVGIAGRDLLVSSPTGSGKTAAFMLPAIE 96
Query: 62 KFAS---SKNKIPVMKKNLNQNNNKIYTHKERLRFKP-AQPRMLVLTPTRELALQVTAAT 117
FA ++ + P + NQ + + R +P A+P +LVLTPTRELA+QVT A
Sbjct: 97 TFAQLQKTQAQQPRAPREPNQGDRRAR------RPQPVARPGLLVLTPTRELAMQVTTAA 150
Query: 118 ERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
YG ++K+++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRL+DH+ G+I+ S L++LV
Sbjct: 151 STYGKHLKRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLV 210
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
LDEADRMLDMGFI DIE IVDATP TRQTMLFSATLDG +G++ + KDP +++
Sbjct: 211 LDEADRMLDMGFIEDIETIVDATPDTRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRL 270
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+ + NI Q++ +VDD HK+RLLD+LLRD + QA++FTATK DAD +A RL +GF +A
Sbjct: 271 ESRANIAQTVHYVDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESA 330
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRI
Sbjct: 331 ALHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRI 390
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRTGRAGR+G AVSLV+HAE+ +K+IERF + +P+ VI GFEP+K
Sbjct: 391 GRTGRAGRSGIAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEPRK 437
>gi|402566171|ref|YP_006615516.1| DEAD/DEAH box helicase [Burkholderia cepacia GG4]
gi|402247368|gb|AFQ47822.1| DEAD/DEAH box helicase-like protein [Burkholderia cepacia GG4]
Length = 515
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 237/407 (58%), Positives = 311/407 (76%), Gaps = 10/407 (2%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F S+GL ++ AL GY KPT VQ++AIPA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 37 TFASLGLSPEIVSALQAAGYAKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 96
Query: 62 KFAS---SKNKIPVMKKNLNQNNNKIYTHKERLRFKP-AQPRMLVLTPTRELALQVTAAT 117
+FA ++ + P + NQ + ++ R +P A+P +LVLTPTRELA+QVT A
Sbjct: 97 RFAQLQKTQAQQPRAPREPNQGDRRVR------RPQPVARPGLLVLTPTRELAMQVTTAA 150
Query: 118 ERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
YG ++K+++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRL+DH+ G+I+ S L++LV
Sbjct: 151 STYGKHLKRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLV 210
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
LDEADRMLDMGFI+DIE IV ATP +RQTMLFSATLDG +G++ + KDP +++
Sbjct: 211 LDEADRMLDMGFIDDIETIVAATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRL 270
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+ + NI Q++ +VDD HK+RLLD+LLRD + QA++FTATK DAD +A RL +GF +A
Sbjct: 271 ESRANIAQTVHYVDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESA 330
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRI
Sbjct: 331 ALHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRI 390
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRTGRAGR+G AVSLV+HAE+ +K+IERF + +P+ VI GFEP+K
Sbjct: 391 GRTGRAGRSGTAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEPRK 437
>gi|78066825|ref|YP_369594.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
gi|77967570|gb|ABB08950.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
Length = 516
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 238/407 (58%), Positives = 311/407 (76%), Gaps = 10/407 (2%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
NF S+GL ++ AL GY KPT VQ++AIPA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 37 NFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 96
Query: 62 KFAS---SKNKIPVMKKNLNQNNNKIYTHKERLRFKP-AQPRMLVLTPTRELALQVTAAT 117
+FA ++ + P + NQ + + R +P A+P +LVLTPTRELA+QVT A
Sbjct: 97 RFAQLQKTQAQQPRAPREPNQGDRRAR------RPQPVARPGLLVLTPTRELAMQVTTAA 150
Query: 118 ERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
YG ++K+++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRL+DH+ G+I+ S L++LV
Sbjct: 151 TTYGKHLKRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLV 210
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
LDEADRMLDMGFI+DIE IV ATP +RQTMLFSATLDG +G++ + KDP +++
Sbjct: 211 LDEADRMLDMGFIDDIETIVAATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRL 270
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+ + NI Q++ +VDD HK+RLLD+LLRD + QA++FTATK DAD +A RL +GF +A
Sbjct: 271 ESRANIAQTVHYVDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESA 330
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRI
Sbjct: 331 ALHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRI 390
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRTGRAGR+G AVSLV+HAE+ +K+IERF + +P+ VI GFEP+K
Sbjct: 391 GRTGRAGRSGTAVSLVHHAEQGALKRIERFVRAPLPVNVIEGFEPRK 437
>gi|170733402|ref|YP_001765349.1| DEAD/DEAH box helicase [Burkholderia cenocepacia MC0-3]
gi|169816644|gb|ACA91227.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
MC0-3]
Length = 514
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 236/407 (57%), Positives = 311/407 (76%), Gaps = 10/407 (2%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F S+GL ++ AL GY KPT VQ++AIPA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 37 SFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 96
Query: 62 KFAS---SKNKIPVMKKNLNQNNNKIYTHKERLRFKP-AQPRMLVLTPTRELALQVTAAT 117
+FA ++ + P + NQ + ++ R +P A+P +LVLTPTRELA+QVT A
Sbjct: 97 RFAQLQKTQAQQPRAPREPNQGDRRVR------RPQPVARPGLLVLTPTRELAMQVTTAA 150
Query: 118 ERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
YG ++K+++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRL+DH+ G+I+ S L++LV
Sbjct: 151 STYGKHLKRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLV 210
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
LDEADRMLDMGFI DIE IV ATP +RQTMLFSATLDG +G++ + +DP +++
Sbjct: 211 LDEADRMLDMGFIEDIETIVAATPESRQTMLFSATLDGKIGSLTSRLLRDPERIEIQQRL 270
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+ + NI Q++ +VDD HK+RLLD+LLRD + QA++FTATK DAD +A RL +GF +A
Sbjct: 271 ESRANIAQTVHYVDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESA 330
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRI
Sbjct: 331 ALHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRI 390
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRTGRAGR+G AVSLV+HAE+ +K+IERF + +P+ VI GFEP+K
Sbjct: 391 GRTGRAGRSGIAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEPRK 437
>gi|254247856|ref|ZP_04941177.1| hypothetical protein BCPG_02669 [Burkholderia cenocepacia PC184]
gi|124872632|gb|EAY64348.1| hypothetical protein BCPG_02669 [Burkholderia cenocepacia PC184]
Length = 545
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 237/407 (58%), Positives = 311/407 (76%), Gaps = 10/407 (2%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F S+GL ++ AL GY KPT VQ++AIPA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 68 SFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 127
Query: 62 KFAS---SKNKIPVMKKNLNQNNNKIYTHKERLRFKP-AQPRMLVLTPTRELALQVTAAT 117
+FA ++ + P + NQ + ++ R +P A+P +LVLTPTRELA+QVT A
Sbjct: 128 RFAQLQKTQAQQPRAPREPNQGDRRVR------RPQPVARPGLLVLTPTRELAMQVTTAA 181
Query: 118 ERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
YG ++K+++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRL+DH+ G+I+ S L++LV
Sbjct: 182 STYGKHLKRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLV 241
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
LDEADRMLDMGFI DIE IV ATP +RQTMLFSATLDG +G++ + KDP +++
Sbjct: 242 LDEADRMLDMGFIEDIETIVAATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRL 301
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+ + NI Q++ +VDD HK+RLLD+LLRD + QA++FTATK DAD +A RL +GF +A
Sbjct: 302 ESRANIAQTVHYVDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESA 361
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRI
Sbjct: 362 ALHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRI 421
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRTGRAGR+G AVSLV+HAE+ +K+IERF + +P+ VI GFEP+K
Sbjct: 422 GRTGRAGRSGIAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEPRK 468
>gi|444361124|ref|ZP_21162267.1| DEAD/DEAH box helicase, partial [Burkholderia cenocepacia BC7]
gi|443598510|gb|ELT66861.1| DEAD/DEAH box helicase, partial [Burkholderia cenocepacia BC7]
Length = 471
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 238/407 (58%), Positives = 309/407 (75%), Gaps = 10/407 (2%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F S+GL ++ AL GY KPT VQ++AIP I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 37 SFASLGLSPEIVSALQAAGYVKPTPVQQRAIPVGIAGRDLLVSSPTGSGKTAAFMLPAIE 96
Query: 62 KFAS---SKNKIPVMKKNLNQNNNKIYTHKERLRFKP-AQPRMLVLTPTRELALQVTAAT 117
FA ++ + P + NQ + + R +P A+P +LVLTPTRELA+QVT A
Sbjct: 97 TFAQLQKTQAQQPRAPREPNQGDRRAR------RPQPVARPGLLVLTPTRELAMQVTTAA 150
Query: 118 ERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
YG ++K+++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRL+DH+ G+I+ S L++LV
Sbjct: 151 STYGKHLKRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLV 210
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
LDEADRMLDMGFI DIE IVDATP TRQTMLFSATLDG +G++ + KDP +++
Sbjct: 211 LDEADRMLDMGFIEDIETIVDATPDTRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRL 270
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+ + NI Q++ +VDD HK+RLLD+LLRD + QA++FTATK DAD +A RL +GF +A
Sbjct: 271 ESRANIAQTVHYVDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESA 330
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRI
Sbjct: 331 ALHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRI 390
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRTGRAGR+G AVSLV+HAE+ +K+IERF + +P+ VI GFEP+K
Sbjct: 391 GRTGRAGRSGIAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEPRK 437
>gi|115352130|ref|YP_773969.1| DEAD/DEAH box helicase [Burkholderia ambifaria AMMD]
gi|115282118|gb|ABI87635.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
Length = 512
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 236/407 (57%), Positives = 311/407 (76%), Gaps = 10/407 (2%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F S+GL ++ AL GY KPT VQ++AIPA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 37 SFASLGLSPEIVSALEAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 96
Query: 62 KFASSKNKI---PVMKKNLNQNNNKIYTHKERLRFKP-AQPRMLVLTPTRELALQVTAAT 117
+FA + + P + +Q + ++ R +P A+P +LVLTPTRELA+QVT A
Sbjct: 97 RFAQLQKTLAQQPRTPREPSQGDRRVR------RPQPVARPGLLVLTPTRELAMQVTTAA 150
Query: 118 ERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
YG ++K+++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRL+DH+ G+I+ S L++LV
Sbjct: 151 STYGKHLKRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLV 210
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
LDEADRMLDMGFI+DIE IV ATP +RQTMLFSATLDG +G++ + KDP +++
Sbjct: 211 LDEADRMLDMGFIDDIETIVAATPASRQTMLFSATLDGKIGSLTGRLLKDPERIEIQQRL 270
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+ + NI Q++ +VDD HK+RLLD+LLRD + QA++FTATK DAD +A RL +GF +A
Sbjct: 271 ESRTNIAQTVHYVDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESA 330
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRI
Sbjct: 331 ALHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRI 390
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRTGRAGR+G AVSLV+HAE+ +K+IERF + +P+ VI GFEP+K
Sbjct: 391 GRTGRAGRSGTAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEPRK 437
>gi|172060994|ref|YP_001808646.1| DEAD/DEAH box helicase [Burkholderia ambifaria MC40-6]
gi|171993511|gb|ACB64430.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MC40-6]
Length = 512
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 236/407 (57%), Positives = 311/407 (76%), Gaps = 10/407 (2%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F S+GL ++ AL GY KPT VQ++AIPA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 37 SFASLGLSPEIVSALEAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 96
Query: 62 KFASSKNKI---PVMKKNLNQNNNKIYTHKERLRFKP-AQPRMLVLTPTRELALQVTAAT 117
+FA + + P + +Q + ++ R +P A+P +LVLTPTRELA+QVT A
Sbjct: 97 RFAQLQKTLAQQPRTPREPSQGDRRVR------RPQPVARPGLLVLTPTRELAMQVTTAA 150
Query: 118 ERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
YG ++K+++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRL+DH+ G+I+ S L++LV
Sbjct: 151 STYGKHLKRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLV 210
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
LDEADRMLDMGFI+DIE IV ATP +RQTMLFSATLDG +G++ + KDP +++
Sbjct: 211 LDEADRMLDMGFIDDIETIVAATPASRQTMLFSATLDGKIGSLTGRLLKDPERIEIQQRL 270
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+ + NI Q++ +VDD HK+RLLD+LLRD + QA++FTATK DAD +A RL +GF +A
Sbjct: 271 ESRTNIAQTVHYVDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESA 330
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRI
Sbjct: 331 ALHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRI 390
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRTGRAGR+G AVSLV+HAE+ +K+IERF + +P+ VI GFEP+K
Sbjct: 391 GRTGRAGRSGTAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEPRK 437
>gi|323526518|ref|YP_004228671.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
CCGE1001]
gi|323383520|gb|ADX55611.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
Length = 536
Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust.
Identities = 240/406 (59%), Positives = 306/406 (75%), Gaps = 10/406 (2%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F S+GL V+ AL GY PT VQ++A+PA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 48 TFASLGLSADVVSALTAAGYQNPTPVQQRAVPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 107
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKP---AQPRMLVLTPTRELALQVTAATE 118
+FA + K +Q R R +P A+P MLVLTPTRELA+QVT A
Sbjct: 108 RFAQ------LQKAQASQPREPRPADGGRGR-RPQPVARPTMLVLTPTRELAMQVTTAAA 160
Query: 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
YG ++K+++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRLIDH+ G+I+ S LQILVL
Sbjct: 161 TYGKHLKRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDMSQLQILVL 220
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI+DI+ IV ATP TRQTMLFSATLDG +G++ + KDP +++ +
Sbjct: 221 DEADRMLDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIVQRME 280
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
++ NI Q++ +VDD HK+RLLD+LLRD + QA+VFTATK DAD +A RL +GF +A
Sbjct: 281 QRTNIAQTVHYVDDRDHKDRLLDHLLRDAGLDQAIVFTATKMDADQLAGRLADAGFESAA 340
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRIG
Sbjct: 341 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 400
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
RTGRAGR+G AVSLV+HAE+ +K+IERF + +P+ V+ GFEP+K
Sbjct: 401 RTGRAGRSGIAVSLVHHAEQGALKRIERFVRTPLPVNVVEGFEPRK 446
>gi|307729303|ref|YP_003906527.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1003]
gi|307583838|gb|ADN57236.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
Length = 530
Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust.
Identities = 240/406 (59%), Positives = 305/406 (75%), Gaps = 10/406 (2%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F S+GL V+ AL GY PT VQ++A+PA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 49 TFASLGLSADVVSALTAAGYQNPTPVQQRAVPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 108
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKP---AQPRMLVLTPTRELALQVTAATE 118
+F+ + K +Q R R +P A+P MLVLTPTRELA+QVT A
Sbjct: 109 RFSQ------LQKAQASQPREPRPADGGRGR-RPQPVARPTMLVLTPTRELAMQVTTAAA 161
Query: 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
YG ++K+++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRLIDH+ G+I+ S LQILVL
Sbjct: 162 TYGKHLKRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVL 221
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI DIE IV ATP TRQTMLFSATLDG +G++ + KDP +++ +
Sbjct: 222 DEADRMLDMGFIEDIETIVAATPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIVQRME 281
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
++ NI Q++ +VDD HK+RLLD+LLRD + QA+VFTATK DAD +A RL +GF +A
Sbjct: 282 QRTNIAQTVHYVDDRDHKDRLLDHLLRDAGLDQAIVFTATKMDADQLAGRLADAGFESAA 341
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRIG
Sbjct: 342 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 401
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
RTGRAGR+G AVSLV+HAE+ +K+IERF + +P+ V+ GFEP+K
Sbjct: 402 RTGRAGRSGIAVSLVHHAEQGALKRIERFVRTPLPVNVVEGFEPRK 447
>gi|407713964|ref|YP_006834529.1| DEAD/DEAH box helicase [Burkholderia phenoliruptrix BR3459a]
gi|407236148|gb|AFT86347.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
phenoliruptrix BR3459a]
Length = 526
Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust.
Identities = 240/406 (59%), Positives = 306/406 (75%), Gaps = 10/406 (2%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F S+GL V+ AL GY PT VQ++A+PA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 38 TFASLGLSADVVSALTAAGYQNPTPVQQRAVPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 97
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKP---AQPRMLVLTPTRELALQVTAATE 118
+FA + K +Q R R +P A+P MLVLTPTRELA+QVT A
Sbjct: 98 RFAQ------LQKAQASQPREPRPADGGRGR-RPQPVARPTMLVLTPTRELAMQVTTAAA 150
Query: 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
YG ++K+++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRLIDH+ G+I+ S LQILVL
Sbjct: 151 TYGKHLKRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVL 210
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI+DI+ IV ATP TRQTMLFSATLDG +G++ + KDP +++ +
Sbjct: 211 DEADRMLDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIVQRME 270
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
++ NI Q++ +VDD HK+RLLD+LLRD + QA+VFTATK DAD +A RL +GF +A
Sbjct: 271 QRTNIAQTVHYVDDRDHKDRLLDHLLRDAGLDQAIVFTATKMDADQLAGRLADAGFESAA 330
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRIG
Sbjct: 331 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 390
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
RTGRAGR+G AVSLV+HAE+ +K+IERF + +P+ V+ GFEP+K
Sbjct: 391 RTGRAGRSGIAVSLVHHAEQGALKRIERFVRTPLPVNVVEGFEPRK 436
>gi|167563223|ref|ZP_02356139.1| DEAD/DEAH box helicase domain protein [Burkholderia oklahomensis
EO147]
gi|167570404|ref|ZP_02363278.1| DEAD/DEAH box helicase domain protein [Burkholderia oklahomensis
C6786]
Length = 509
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 236/404 (58%), Positives = 305/404 (75%), Gaps = 7/404 (1%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F S+GL ++ AL GY KPT VQ++AIPA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 41 TFASLGLSPEIVSALQAAGYAKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 100
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKP-AQPRMLVLTPTRELALQVTAATERY 120
+FA + K Q + R +P A+P +LVLTPTRELA+QVT A Y
Sbjct: 101 RFAQ------LQKTQAQQPREPQQGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTY 154
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++++++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRL+DH+ G+I+ S L++LVLDE
Sbjct: 155 GKHLRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDE 214
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DIE IV ATP TRQTMLFSATLDG +G++ + KDP +++ + +
Sbjct: 215 ADRMLDMGFIDDIETIVAATPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIQQRLESR 274
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NI Q++ +VDD HK+RLLD+LLRD + QA++FTATK DAD +A RL +GF +A LH
Sbjct: 275 TNIAQTVHYVDDRDHKDRLLDHLLRDTALDQAIIFTATKIDADQLAGRLADAGFESAALH 334
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRIGRT
Sbjct: 335 GDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRT 394
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRAGR+G AVSLV+HAE+ +K+IERF + +P+ VI GFEP+K
Sbjct: 395 GRAGRSGTAVSLVHHAEQGALKRIERFVRAPLPVNVIEGFEPRK 438
>gi|187924463|ref|YP_001896105.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN]
gi|187715657|gb|ACD16881.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
PsJN]
Length = 542
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 240/406 (59%), Positives = 306/406 (75%), Gaps = 10/406 (2%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F S+GL V+ AL GY PT VQ++AIPA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 49 SFASLGLSADVVSALTAAGYQNPTPVQQRAIPAGIAGRDLMVSSPTGSGKTAAFMLPAIE 108
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKP---AQPRMLVLTPTRELALQVTAATE 118
+F+ + K +Q R R +P A+P MLVLTPTRELA+QVT A
Sbjct: 109 RFSQ------LQKAQASQPREPRPADGARTR-RPQPVARPTMLVLTPTRELAMQVTTAAA 161
Query: 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
YG ++K+++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRLIDH+ G+I+ S LQILVL
Sbjct: 162 TYGKHLKRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVL 221
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI DIE IV ATP TRQTMLFSATLDG + ++ + KDP +++ +
Sbjct: 222 DEADRMLDMGFIEDIETIVAATPATRQTMLFSATLDGKITSLTGRLLKDPERIEIVQRLE 281
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
++ NI Q++ +VDD HK+RLLD+LLRD+ + QA+VFTATK DAD +A RL +GF +A
Sbjct: 282 QRTNIAQTVHYVDDRDHKDRLLDHLLRDEGLDQAIVFTATKMDADQLAGRLADAGFESAA 341
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRIG
Sbjct: 342 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 401
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
RTGRAGR+G AVSLV+HAE+ +K+IERF + +P+ V+ GFEP+K
Sbjct: 402 RTGRAGRSGIAVSLVHHAEQGALKRIERFVRTPLPVNVVEGFEPRK 447
>gi|161524403|ref|YP_001579415.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC 17616]
gi|189350842|ref|YP_001946470.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
gi|160341832|gb|ABX14918.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
ATCC 17616]
gi|189334864|dbj|BAG43934.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
Length = 505
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 237/407 (58%), Positives = 308/407 (75%), Gaps = 10/407 (2%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F S+GL ++ AL GY KPT VQ++AIPA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 31 SFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 90
Query: 62 KFASSKNKI---PVMKKNLNQNNNKIYTHKERLRFKP-AQPRMLVLTPTRELALQVTAAT 117
+FA + P + NQ + R +P A+P +LVLTPTRELA+QVT A
Sbjct: 91 RFAQLQKAQAQQPRAPREANQGERRAR------RPQPVARPGLLVLTPTRELAMQVTTAA 144
Query: 118 ERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
YG ++K+++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRL+DH+ G+I+ S L++LV
Sbjct: 145 STYGKHLKRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLV 204
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
LDEADRMLDMGFI DIE IV+ATP +RQTMLFSATLDG +G++ + KDP +++
Sbjct: 205 LDEADRMLDMGFIEDIETIVEATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRL 264
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+ + NI Q++ +VDD HK+RLLD+LLRD + QA++FTATK DAD +A RL +GF +A
Sbjct: 265 ESRANIAQTVHYVDDRDHKDRLLDHLLRDAALDQAIIFTATKIDADQLAGRLADAGFQSA 324
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRI
Sbjct: 325 ALHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRI 384
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRTGRAGR+G AVSLV+HAE+ +K+IERF + +P+ VI GFEP+K
Sbjct: 385 GRTGRAGRSGIAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEPRK 431
>gi|238026875|ref|YP_002911106.1| DEAD/DEAH box helicase-like protein [Burkholderia glumae BGR1]
gi|237876069|gb|ACR28402.1| DEAD/DEAH box helicase-like protein [Burkholderia glumae BGR1]
Length = 524
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 235/404 (58%), Positives = 307/404 (75%), Gaps = 7/404 (1%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F S+GL ++ AL GY KPT VQ++AIPA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 41 SFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 100
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKP-AQPRMLVLTPTRELALQVTAATERY 120
+FA + K Q + + R +P A+P +LVLTPTRELA+QVT A Y
Sbjct: 101 RFAQ------LQKTQAQQPREPQSGDRRQRRPQPVARPGLLVLTPTRELAMQVTTAASTY 154
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++++++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRL+DH+ G+I+ S L++LVLDE
Sbjct: 155 GKHLRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDE 214
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DIE IV ATP TRQTMLFSATLDG +G++ + K+P +++ + +
Sbjct: 215 ADRMLDMGFIDDIETIVAATPATRQTMLFSATLDGKIGSLTSRLLKEPERIEIVQKLEAR 274
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NI Q++ +VDD HK+RLLD+LLRD + QA++FTATK DAD +A RL +GF +A LH
Sbjct: 275 TNIAQTVHYVDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALH 334
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRIGRT
Sbjct: 335 GDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRT 394
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRAGR+G AVSLV+HAE+ +K+IERF + +P+ VI GFEP+K
Sbjct: 395 GRAGRSGIAVSLVHHAEQGALKRIERFVRTPLPVNVIEGFEPRK 438
>gi|221215428|ref|ZP_03588392.1| dead/deah box helicase [Burkholderia multivorans CGD1]
gi|221164612|gb|EED97094.1| dead/deah box helicase [Burkholderia multivorans CGD1]
Length = 506
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 237/407 (58%), Positives = 308/407 (75%), Gaps = 10/407 (2%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F S+GL ++ AL GY KPT VQ++AIPA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 31 SFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 90
Query: 62 KFASSKNKI---PVMKKNLNQNNNKIYTHKERLRFKP-AQPRMLVLTPTRELALQVTAAT 117
+FA + P + NQ + R +P A+P +LVLTPTRELA+QVT A
Sbjct: 91 RFAQLQKAQAQQPRAPREANQGERRAR------RPQPVARPGLLVLTPTRELAMQVTTAA 144
Query: 118 ERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
YG ++K+++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRL+DH+ G+I+ S L++LV
Sbjct: 145 STYGKHLKRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLV 204
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
LDEADRMLDMGFI DIE IV+ATP +RQTMLFSATLDG +G++ + KDP +++
Sbjct: 205 LDEADRMLDMGFIEDIETIVEATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRL 264
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+ + NI Q++ +VDD HK+RLLD+LLRD + QA++FTATK DAD +A RL +GF +A
Sbjct: 265 ESRANIAQTVHYVDDRDHKDRLLDHLLRDAALDQAIIFTATKIDADQLAGRLADAGFQSA 324
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRI
Sbjct: 325 ALHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRI 384
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRTGRAGR+G AVSLV+HAE+ +K+IERF + +P+ VI GFEP+K
Sbjct: 385 GRTGRAGRSGIAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEPRK 431
>gi|421476562|ref|ZP_15924439.1| DEAD/DEAH box helicase [Burkholderia multivorans CF2]
gi|400228098|gb|EJO58055.1| DEAD/DEAH box helicase [Burkholderia multivorans CF2]
Length = 505
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 237/407 (58%), Positives = 308/407 (75%), Gaps = 10/407 (2%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F S+GL ++ AL GY KPT VQ++AIPA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 31 SFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 90
Query: 62 KFASSKNKI---PVMKKNLNQNNNKIYTHKERLRFKP-AQPRMLVLTPTRELALQVTAAT 117
+FA + P + NQ + R +P A+P +LVLTPTRELA+QVT A
Sbjct: 91 RFAQLQKAQAQQPRAPREANQGERRAR------RPQPVARPGLLVLTPTRELAMQVTTAA 144
Query: 118 ERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
YG ++K+++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRL+DH+ G+I+ S L++LV
Sbjct: 145 STYGKHLKRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLV 204
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
LDEADRMLDMGFI DIE IV+ATP +RQTMLFSATLDG +G++ + KDP +++
Sbjct: 205 LDEADRMLDMGFIEDIETIVEATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRL 264
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+ + NI Q++ +VDD HK+RLLD+LLRD + QA++FTATK DAD +A RL +GF +A
Sbjct: 265 ESRANIAQTVHYVDDRDHKDRLLDHLLRDAALDQAIIFTATKIDADQLAGRLADAGFQSA 324
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRI
Sbjct: 325 ALHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRI 384
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRTGRAGR+G AVSLV+HAE+ +K+IERF + +P+ VI GFEP+K
Sbjct: 385 GRTGRAGRSGIAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEPRK 431
>gi|221198351|ref|ZP_03571397.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
gi|221208290|ref|ZP_03581294.1| dead/deah box helicase [Burkholderia multivorans CGD2]
gi|221171938|gb|EEE04381.1| dead/deah box helicase [Burkholderia multivorans CGD2]
gi|221182283|gb|EEE14684.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
Length = 506
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 237/407 (58%), Positives = 308/407 (75%), Gaps = 10/407 (2%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F S+GL ++ AL GY KPT VQ++AIPA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 31 SFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 90
Query: 62 KFASSKNKI---PVMKKNLNQNNNKIYTHKERLRFKP-AQPRMLVLTPTRELALQVTAAT 117
+FA + P + NQ + R +P A+P +LVLTPTRELA+QVT A
Sbjct: 91 RFAQLQKAQAQQPRAPREANQGERRAR------RPQPVARPGLLVLTPTRELAMQVTTAA 144
Query: 118 ERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
YG ++K+++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRL+DH+ G+I+ S L++LV
Sbjct: 145 STYGKHLKRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLV 204
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
LDEADRMLDMGFI DIE IV+ATP +RQTMLFSATLDG +G++ + KDP +++
Sbjct: 205 LDEADRMLDMGFIEDIETIVEATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRL 264
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+ + NI Q++ +VDD HK+RLLD+LLRD + QA++FTATK DAD +A RL +GF +A
Sbjct: 265 ESRANIAQTVHYVDDRDHKDRLLDHLLRDAALDQAIIFTATKIDADQLAGRLADAGFQSA 324
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRI
Sbjct: 325 ALHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRI 384
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRTGRAGR+G AVSLV+HAE+ +K+IERF + +P+ VI GFEP+K
Sbjct: 385 GRTGRAGRSGIAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEPRK 431
>gi|209518020|ref|ZP_03266851.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
gi|209501524|gb|EEA01549.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
Length = 532
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 239/406 (58%), Positives = 305/406 (75%), Gaps = 10/406 (2%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F S+GL V+ AL GY PT VQ++A+PA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 37 TFASLGLSADVVSALTAAGYEHPTPVQQRAVPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 96
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKP---AQPRMLVLTPTRELALQVTAATE 118
+FA + K +Q R R +P A+P MLVLTPTRELA+QVT A
Sbjct: 97 RFAQ------LQKAQASQPREPRPADGGRGR-RPQPVARPTMLVLTPTRELAMQVTTAAA 149
Query: 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
YG ++K+++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRLIDH+ G+I+ S LQILVL
Sbjct: 150 TYGKHLKRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVL 209
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI+DI+ IV TP TRQTMLFSATLDG +G++ + KDP +++ +
Sbjct: 210 DEADRMLDMGFIDDIDTIVAETPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIVQRME 269
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
++ NI Q++ +VDD HK+RLLD+LLRD + QA+VFTATK DAD +A RL +GF +A
Sbjct: 270 QRTNIAQTVHYVDDRDHKDRLLDHLLRDAGLDQAIVFTATKMDADQLAGRLADAGFESAA 329
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRIG
Sbjct: 330 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 389
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
RTGRAGR+G AVSLV+HAE+ +K+IERF + +P+ V+ GFEP+K
Sbjct: 390 RTGRAGRSGVAVSLVHHAEQGALKRIERFVRTPLPVNVVEGFEPRK 435
>gi|421473380|ref|ZP_15921497.1| DEAD/DEAH box helicase, partial [Burkholderia multivorans ATCC
BAA-247]
gi|400221128|gb|EJO51613.1| DEAD/DEAH box helicase, partial [Burkholderia multivorans ATCC
BAA-247]
Length = 456
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 237/407 (58%), Positives = 308/407 (75%), Gaps = 10/407 (2%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F S+GL ++ AL GY KPT VQ++AIPA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 31 SFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 90
Query: 62 KFASSKNKI---PVMKKNLNQNNNKIYTHKERLRFKP-AQPRMLVLTPTRELALQVTAAT 117
+FA + P + NQ + R +P A+P +LVLTPTRELA+QVT A
Sbjct: 91 RFAQLQKAQAQQPRAPREANQGERRAR------RPQPVARPGLLVLTPTRELAMQVTTAA 144
Query: 118 ERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
YG ++K+++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRL+DH+ G+I+ S L++LV
Sbjct: 145 STYGKHLKRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLV 204
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
LDEADRMLDMGFI DIE IV+ATP +RQTMLFSATLDG +G++ + KDP +++
Sbjct: 205 LDEADRMLDMGFIEDIETIVEATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRL 264
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+ + NI Q++ +VDD HK+RLLD+LLRD + QA++FTATK DAD +A RL +GF +A
Sbjct: 265 ESRANIAQTVHYVDDRDHKDRLLDHLLRDAALDQAIIFTATKIDADQLAGRLADAGFQSA 324
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRI
Sbjct: 325 ALHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRI 384
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRTGRAGR+G AVSLV+HAE+ +K+IERF + +P+ VI GFEP+K
Sbjct: 385 GRTGRAGRSGIAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEPRK 431
>gi|254252033|ref|ZP_04945351.1| hypothetical protein BDAG_01244 [Burkholderia dolosa AUO158]
gi|124894642|gb|EAY68522.1| hypothetical protein BDAG_01244 [Burkholderia dolosa AUO158]
Length = 523
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 236/407 (57%), Positives = 307/407 (75%), Gaps = 10/407 (2%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F S+GL ++ AL GY KPT VQ++AIPA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 47 TFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 106
Query: 62 KFAS---SKNKIPVMKKNLNQNNNKIYTHKERLRFKP-AQPRMLVLTPTRELALQVTAAT 117
+FA + + P + Q + R +P A+P +LVLTPTRELA+QVT A
Sbjct: 107 RFAQLQKAHAQQPRAPREAGQGERRAR------RPQPVARPGLLVLTPTRELAMQVTTAA 160
Query: 118 ERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
YG ++K+++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRL+DH+ G+I+ S L++LV
Sbjct: 161 STYGKHLKRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLV 220
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
LDEADRMLDMGFI+DIE IV ATP +RQTMLFSATLDG +G++ + KDP +++
Sbjct: 221 LDEADRMLDMGFIDDIETIVAATPASRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRL 280
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+ + NI Q++ +VDD HK+RLLD+LLRD + QA++FTATK DAD +A RL +GF +A
Sbjct: 281 ESRANIAQTVHYVDDRDHKDRLLDHLLRDTALDQAIIFTATKIDADQLAGRLADAGFESA 340
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRI
Sbjct: 341 ALHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRI 400
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRTGRAGR+G AVSLV+HAE+ +K+IERF + +P+ VI GFEP+K
Sbjct: 401 GRTGRAGRSGIAVSLVHHAEQGALKRIERFVRAPLPVNVIEGFEPRK 447
>gi|390568878|ref|ZP_10249170.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
gi|420252763|ref|ZP_14755860.1| DNA/RNA helicase, superfamily II [Burkholderia sp. BT03]
gi|389939227|gb|EIN01064.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
gi|398053794|gb|EJL45951.1| DNA/RNA helicase, superfamily II [Burkholderia sp. BT03]
Length = 553
Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust.
Identities = 233/403 (57%), Positives = 304/403 (75%), Gaps = 2/403 (0%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F +GL ++ AL GY PT VQ++AIPA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 36 TFAELGLSADIVSALTAAGYKTPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 95
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+FA + + + ++N + R A+P +LVLTPTRELA+QVT A YG
Sbjct: 96 RFAQLQITLASQPRESRESN--AAGGRGRRPMPVARPSLLVLTPTRELAMQVTTAASTYG 153
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
++K+++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRL+DH+ G+I+ S LQ+LVLDEA
Sbjct: 154 KHLKRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSQLQMLVLDEA 213
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGFI+DIE IV ATP TRQTMLFSATLDG +G++ + KDP +++ +++
Sbjct: 214 DRMLDMGFIDDIETIVAATPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIVQRMEQRT 273
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
NI Q++ +VDD HK+RLLD+LLR + QA+VFTATK DAD +A RL +GF +A LHG
Sbjct: 274 NIAQTVHYVDDRDHKDRLLDHLLRADGLDQAIVFTATKSDADSLAGRLADAGFESAALHG 333
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
DL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRIGRTG
Sbjct: 334 DLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTG 393
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
RAGR+G AVSLV+HAE+ +K+IERF + +P+ V+ GFEP+K
Sbjct: 394 RAGRSGIAVSLVHHAEQGALKRIERFVRSPLPVNVVEGFEPRK 436
>gi|387902585|ref|YP_006332924.1| ATP-dependent RNA helicase [Burkholderia sp. KJ006]
gi|387577477|gb|AFJ86193.1| ATP-dependent RNA helicase [Burkholderia sp. KJ006]
Length = 516
Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust.
Identities = 235/407 (57%), Positives = 310/407 (76%), Gaps = 10/407 (2%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F S+GL ++ AL GY KPT VQ++AIPA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 36 TFASLGLSPEIVSALEAAGYAKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 95
Query: 62 KFAS---SKNKIPVMKKNLNQNNNKIYTHKERLRFKP-AQPRMLVLTPTRELALQVTAAT 117
+FA S+ + P + NQ + + R +P A+P +LVLTPTRELA+QVT A
Sbjct: 96 RFAQLQKSQAQQPRAPREPNQGDRRAR------RPQPVARPSLLVLTPTRELAMQVTTAA 149
Query: 118 ERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
YG ++++++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRL+DH+ G+I+ S L++LV
Sbjct: 150 TTYGKHLRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLV 209
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
LDEADRMLDMGFI+DIE IV ATP +RQTMLFSATLDG +G++ + +P +++ +
Sbjct: 210 LDEADRMLDMGFIDDIETIVAATPASRQTMLFSATLDGKIGSLTSRLLNNPERIEIVAKI 269
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+ + NI Q++ +VDD HK+RLLD+LLRD + QA++FTATK DAD +A RL +GF +A
Sbjct: 270 ESRANIAQTVHYVDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESA 329
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRI
Sbjct: 330 ALHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRI 389
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRTGRAGR+G AVSLV+HAE+ +K+IERF + +P+ VI GFEP+K
Sbjct: 390 GRTGRAGRSGTAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEPRK 436
>gi|134296056|ref|YP_001119791.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
vietnamiensis G4]
gi|134139213|gb|ABO54956.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
G4]
Length = 516
Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust.
Identities = 235/407 (57%), Positives = 310/407 (76%), Gaps = 10/407 (2%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F S+GL ++ AL GY KPT VQ++AIPA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 36 TFASLGLSPEIVSALEAAGYAKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 95
Query: 62 KFAS---SKNKIPVMKKNLNQNNNKIYTHKERLRFKP-AQPRMLVLTPTRELALQVTAAT 117
+FA S+ + P + NQ + + R +P A+P +LVLTPTRELA+QVT A
Sbjct: 96 RFAQLQKSQAQQPRAPREPNQGDRRAR------RPQPVARPSLLVLTPTRELAMQVTTAA 149
Query: 118 ERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
YG ++++++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRL+DH+ G+I+ S L++LV
Sbjct: 150 TTYGKHLRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLV 209
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
LDEADRMLDMGFI+DIE IV ATP +RQTMLFSATLDG +G++ + +P +++ +
Sbjct: 210 LDEADRMLDMGFIDDIETIVAATPASRQTMLFSATLDGKIGSLTSRLLNNPERIEIVAKI 269
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+ + NI Q++ +VDD HK+RLLD+LLRD + QA++FTATK DAD +A RL +GF +A
Sbjct: 270 ESRANIAQTVHYVDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESA 329
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRI
Sbjct: 330 ALHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRI 389
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRTGRAGR+G AVSLV+HAE+ +K+IERF + +P+ VI GFEP+K
Sbjct: 390 GRTGRAGRSGTAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEPRK 436
>gi|385209074|ref|ZP_10035942.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
gi|385181412|gb|EIF30688.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
Length = 539
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 239/406 (58%), Positives = 304/406 (74%), Gaps = 10/406 (2%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F S+GL V+ AL GY PT VQ++AIPA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 52 SFASLGLSADVVSALTAAGYQNPTPVQQRAIPAGIAGRDLMVSSPTGSGKTAAFMLPAIE 111
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKP---AQPRMLVLTPTRELALQVTAATE 118
+F+ + K Q R R +P A+P MLVLTPTRELA+QVT A
Sbjct: 112 RFSQ------LQKAQAGQPREPRPADGARTR-RPQPVARPTMLVLTPTRELAMQVTTAAA 164
Query: 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
YG ++K+++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRLIDH+ G+I+ S LQILVL
Sbjct: 165 TYGKHLKRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVL 224
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI DIE IV ATP TRQTMLFSATLDG + ++ + KDP +++ +
Sbjct: 225 DEADRMLDMGFIEDIETIVAATPATRQTMLFSATLDGKITSLTGRLLKDPERIEIVQRLE 284
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
++ NI Q++ +VDD HK+RLLD+LLRD+ + QA+VFTATK DAD +A RL +GF +A
Sbjct: 285 QRTNIAQTVHYVDDRDHKDRLLDHLLRDEGLDQAIVFTATKMDADQLAGRLADAGFESAA 344
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRIG
Sbjct: 345 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 404
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
RTGRAGR+G AVSLV+HAE+ +K+IERF + + + V+ GFEP+K
Sbjct: 405 RTGRAGRSGIAVSLVHHAEQGALKRIERFVRAPLAVNVVEGFEPRK 450
>gi|330817466|ref|YP_004361171.1| DEAD/DEAH box helicase [Burkholderia gladioli BSR3]
gi|327369859|gb|AEA61215.1| DEAD/DEAH box helicase-like protein [Burkholderia gladioli BSR3]
Length = 524
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 233/404 (57%), Positives = 306/404 (75%), Gaps = 4/404 (0%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F S+GL ++ AL GY KPT VQ++AIPA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 39 SFASLGLSPEIVSALEAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 98
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKP-AQPRMLVLTPTRELALQVTAATERY 120
+FA + + + + R +P A+P +LVLTPTRELA+QVT A Y
Sbjct: 99 RFAQLQK---TQAQQPRAPREPQSADRRQRRPQPVARPGLLVLTPTRELAMQVTTAASTY 155
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++++++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRL+DH+ G+I+ S L++LVLDE
Sbjct: 156 GKHLRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDE 215
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DIE IV ATP +RQTMLFSATLDG +G++ + KDP +++ + +
Sbjct: 216 ADRMLDMGFIDDIETIVAATPASRQTMLFSATLDGKIGSLTSRLLKDPERIEIVQKMEAR 275
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NI Q++ +VDD HK+RLLD+LLRD + QA++FTATK DAD +A RL +GF +A LH
Sbjct: 276 TNIAQTVHYVDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALH 335
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRIGRT
Sbjct: 336 GDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRT 395
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRAGR+G AVSLV+HAE+ +K+IERF + +P+ VI GFEP+K
Sbjct: 396 GRAGRSGIAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEPRK 439
>gi|295676852|ref|YP_003605376.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1002]
gi|295436695|gb|ADG15865.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
Length = 544
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 238/406 (58%), Positives = 306/406 (75%), Gaps = 10/406 (2%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F S+GL V+ AL GY PT VQ++A+PA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 37 SFASLGLSAEVVSALTAAGYEHPTPVQQRAVPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 96
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKP---AQPRMLVLTPTRELALQVTAATE 118
+FA + K +Q R R +P A+P MLVLTPTRELA+QVT A
Sbjct: 97 RFAQ------LQKAQASQPREPRPADGGRGR-RPQPVARPTMLVLTPTRELAMQVTTAAA 149
Query: 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
YG ++K+++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRLIDH+ G+I+ S LQILVL
Sbjct: 150 TYGKHLKRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVL 209
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI+DI+ IV TP TRQTMLFSATLDG +G++ + KDP +++ +
Sbjct: 210 DEADRMLDMGFIDDIDTIVAETPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIVQRME 269
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
++ NI+Q++ +VDD HK+RLLD+LLR + QA+VFTATK DAD +A RL +GF +A
Sbjct: 270 QRTNISQTVHYVDDRDHKDRLLDHLLRADGLDQAIVFTATKMDADQLAGRLADAGFESAA 329
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRIG
Sbjct: 330 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 389
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
RTGRAGR+G AVSLV+HAE+ +K+IERF + +P+ V+ GFEP+K
Sbjct: 390 RTGRAGRSGIAVSLVHHAEQGALKRIERFVRTPLPVNVVEGFEPRK 435
>gi|186476125|ref|YP_001857595.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
phymatum STM815]
gi|184192584|gb|ACC70549.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
STM815]
Length = 556
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 233/403 (57%), Positives = 310/403 (76%), Gaps = 5/403 (1%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F +GL ++ AL GY PT VQ++AIPA I+GRDL+VSS TGSGKTAAFMLPA+ +
Sbjct: 37 FAELGLSAEIVSALTAAGYKSPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 96
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKP-AQPRMLVLTPTRELALQVTAATERYG 121
FA + K+ + ++NN + R +P A+P +LVLTPTRELA+QVT A YG
Sbjct: 97 FAQLQ-KVQASQPREPRDNNAGGRGR---RPQPVARPGLLVLTPTRELAMQVTTAASTYG 152
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
++++++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRLIDH+ G+I+ S LQ+LVLDEA
Sbjct: 153 KHLRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQMLVLDEA 212
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGFI+DI+ IV ATP +RQTMLFSATLDG +G++ + K+P +++ +++
Sbjct: 213 DRMLDMGFIDDIDTIVAATPASRQTMLFSATLDGKIGSLTGRLLKEPERIEIKQHIEQRT 272
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
NI Q++ +VDD HK+RLLD+LLRD + QA+VFTATK DAD++A RL +GF +A LHG
Sbjct: 273 NIAQTVHYVDDRDHKDRLLDHLLRDSGLDQAIVFTATKSDADMLAGRLADAGFESAALHG 332
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
DL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRIGRTG
Sbjct: 333 DLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTG 392
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
RAGR+G AVSLV+HAE+ +K+IERF + +P+ V+ GFEP++
Sbjct: 393 RAGRSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEPRR 435
>gi|312602490|ref|YP_004022335.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
gi|312169804|emb|CBW76816.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
Length = 630
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 236/408 (57%), Positives = 305/408 (74%), Gaps = 6/408 (1%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F ++GL ++ AL GY PT VQ++AIPAA++GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 132 GFIALGLSPEIVSALTAAGYQAPTPVQQRAIPAALAGRDLLVSSPTGSGKTAAFMLPAIE 191
Query: 62 KFASSKNKIPVMKKNLNQNNNKIY----THKERLRFKP-AQPRMLVLTPTRELALQVTAA 116
+FA + K + + NQ ++ + R +P A+P +LVLTPTRELA+QVT A
Sbjct: 192 RFAQMQ-KAGTLGQRANQPVHQAQRGDRGERRHRREQPVARPALLVLTPTRELAMQVTTA 250
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
YG ++++++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRLIDH+ G+I+ S LQ+L
Sbjct: 251 ATTYGKHLRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQML 310
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI DIE I+D TP TRQT+LFSATLDG VG++A+ D +++
Sbjct: 311 VLDEADRMLDMGFIEDIEAIIDRTPATRQTLLFSATLDGKVGSLAQRFLSDAERIEIRRE 370
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ + NI QS+ +VDD HK+RLL +LL D + QA+VFTATK DAD+IA RL GF +
Sbjct: 371 PESRANIAQSVHYVDDRAHKDRLLTHLLADGALDQAIVFTATKNDADVIAARLAEDGFAS 430
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHR
Sbjct: 431 AALHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHR 490
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
IGRTGRAGR+G AVSLV+HAE +K+IERF + +P+ VI GFEPK+
Sbjct: 491 IGRTGRAGRSGIAVSLVHHAEVGTLKRIERFVRTPLPVNVIAGFEPKR 538
>gi|91784149|ref|YP_559355.1| ATP-dependent RNA helicase [Burkholderia xenovorans LB400]
gi|91688103|gb|ABE31303.1| Putative ATP-dependent RNA helicase [Burkholderia xenovorans LB400]
Length = 537
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 239/406 (58%), Positives = 303/406 (74%), Gaps = 10/406 (2%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F S+GL V+ AL GY PT VQ++AIPA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 49 SFASLGLSADVVSALTAAGYQNPTPVQQRAIPAGIAGRDLMVSSPTGSGKTAAFMLPAIE 108
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKP---AQPRMLVLTPTRELALQVTAATE 118
+F+ + K Q R R +P A+P MLVLTPTRELA+QVT A
Sbjct: 109 RFSQ------LQKTQAGQPREPRPADGARTR-RPQPVARPTMLVLTPTRELAMQVTTAAA 161
Query: 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
YG ++K+++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRLIDH+ G+I+ S LQILVL
Sbjct: 162 TYGKHLKRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVL 221
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI DIE IV ATP TRQTMLFSATLDG + ++ + KDP +++ +
Sbjct: 222 DEADRMLDMGFIEDIETIVAATPATRQTMLFSATLDGKITSLTGRLLKDPERIEIVQRME 281
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
++ NI Q++ +VDD HK+RLLD+LLRD + QA+VFTATK DAD +A RL +GF +A
Sbjct: 282 QRTNIAQTVHYVDDRDHKDRLLDHLLRDSGLDQAIVFTATKIDADQLAGRLADAGFESAA 341
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRIG
Sbjct: 342 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 401
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
RTGRAGR+G AVSLV+HAE+ +K+IERF + + + V+ GFEP+K
Sbjct: 402 RTGRAGRSGIAVSLVHHAEQGALKRIERFVRTPLAVNVVEGFEPRK 447
>gi|167837073|ref|ZP_02463956.1| ATP-dependent RNA helicase [Burkholderia thailandensis MSMB43]
Length = 475
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 233/406 (57%), Positives = 306/406 (75%), Gaps = 8/406 (1%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F S+GL ++ AL GY KPT VQ++AIPA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 40 TFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 99
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKP---AQPRMLVLTPTRELALQVTAATE 118
+FA + + L + ER +P A+P +LVLTPTRELA+QVT A
Sbjct: 100 RFAQLQKT-----QALQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAAS 154
Query: 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
YG ++++++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRL+DH+ G+I+ S L++LVL
Sbjct: 155 TYGKHLRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVL 214
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI+DI+ IV ATP +RQTMLFSATLDG +G++ + KDP +++ +
Sbjct: 215 DEADRMLDMGFIDDIDTIVAATPASRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIE 274
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ NI Q++ +VDD HK+RLLD+LLRD + QA++FTATK DAD +A RL +GF +A
Sbjct: 275 SRSNIAQTVHYVDDRDHKDRLLDHLLRDVALDQAIIFTATKIDADQLAGRLADAGFQSAA 334
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRIG
Sbjct: 335 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 394
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
RTGRAGR+G AVSLV+HAE+ +K+IERF + +P+ V+ GFEP+K
Sbjct: 395 RTGRAGRSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEPRK 440
>gi|424903669|ref|ZP_18327182.1| ATP-dependent RNA helicase [Burkholderia thailandensis MSMB43]
gi|390931542|gb|EIP88943.1| ATP-dependent RNA helicase [Burkholderia thailandensis MSMB43]
Length = 508
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 233/406 (57%), Positives = 306/406 (75%), Gaps = 8/406 (1%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F S+GL ++ AL GY KPT VQ++AIPA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 40 TFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 99
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKP---AQPRMLVLTPTRELALQVTAATE 118
+FA + + L + ER +P A+P +LVLTPTRELA+QVT A
Sbjct: 100 RFAQLQKT-----QALQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAAS 154
Query: 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
YG ++++++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRL+DH+ G+I+ S L++LVL
Sbjct: 155 TYGKHLRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVL 214
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI+DI+ IV ATP +RQTMLFSATLDG +G++ + KDP +++ +
Sbjct: 215 DEADRMLDMGFIDDIDTIVAATPASRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIE 274
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ NI Q++ +VDD HK+RLLD+LLRD + QA++FTATK DAD +A RL +GF +A
Sbjct: 275 SRSNIAQTVHYVDDRDHKDRLLDHLLRDVALDQAIIFTATKIDADQLAGRLADAGFQSAA 334
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRIG
Sbjct: 335 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 394
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
RTGRAGR+G AVSLV+HAE+ +K+IERF + +P+ V+ GFEP+K
Sbjct: 395 RTGRAGRSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEPRK 440
>gi|76809038|ref|YP_334004.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b]
gi|76578491|gb|ABA47966.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b]
Length = 529
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 233/406 (57%), Positives = 305/406 (75%), Gaps = 8/406 (1%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F S+GL ++ AL GY KPT VQ++AIPA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 57 TFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 116
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKP---AQPRMLVLTPTRELALQVTAATE 118
+FA + + + ER +P A+P +LVLTPTRELA+QVT A
Sbjct: 117 RFAQLQKAQAQQPRAPREGQPG-----ERRGRRPQPVARPGLLVLTPTRELAMQVTTAAS 171
Query: 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
YG ++++++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRL+DH+ G+I+ S L++LVL
Sbjct: 172 TYGKHLRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVL 231
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI+DI+ IV ATP TRQTMLFSATLDG +G++ + KDP +++ +
Sbjct: 232 DEADRMLDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIE 291
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ NI Q++ +VDD HK+RLLD+LLRD + QA++FTATK DAD +A RL +GF +A
Sbjct: 292 SRSNIAQTVHYVDDRDHKDRLLDHLLRDVALDQAIIFTATKIDADQLAGRLADAGFQSAA 351
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRIG
Sbjct: 352 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 411
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
RTGRAGR+G AVSLV+HAE+ +K+IERF + +P+ V+ GFEP+K
Sbjct: 412 RTGRAGRSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEPRK 457
>gi|134277372|ref|ZP_01764087.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
gi|226198998|ref|ZP_03794561.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
gi|134251022|gb|EBA51101.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
gi|225929098|gb|EEH25122.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
Length = 513
Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust.
Identities = 233/406 (57%), Positives = 305/406 (75%), Gaps = 8/406 (1%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F S+GL ++ AL GY KPT VQ++AIPA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 41 TFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 100
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKP---AQPRMLVLTPTRELALQVTAATE 118
+FA + + + ER +P A+P +LVLTPTRELA+QVT A
Sbjct: 101 RFAQLQKAQAQQPRAPREGQPG-----ERRGRRPQPVARPGLLVLTPTRELAMQVTTAAS 155
Query: 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
YG ++++++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRL+DH+ G+I+ S L++LVL
Sbjct: 156 TYGKHLRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVL 215
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI+DI+ IV ATP TRQTMLFSATLDG +G++ + KDP +++ +
Sbjct: 216 DEADRMLDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIE 275
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ NI Q++ +VDD HK+RLLD+LLRD + QA++FTATK DAD +A RL +GF +A
Sbjct: 276 SRSNIAQTVHYVDDRDHKDRLLDHLLRDVALDQAIIFTATKIDADQLAGRLADAGFQSAA 335
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRIG
Sbjct: 336 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 395
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
RTGRAGR+G AVSLV+HAE+ +K+IERF + +P+ V+ GFEP+K
Sbjct: 396 RTGRAGRSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEPRK 441
>gi|126453899|ref|YP_001066782.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
gi|237812839|ref|YP_002897290.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
gi|242315830|ref|ZP_04814846.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
gi|254179293|ref|ZP_04885892.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1655]
gi|254189321|ref|ZP_04895832.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pasteur 52237]
gi|254198045|ref|ZP_04904467.1| DEAD/DEAH box helicase [Burkholderia pseudomallei S13]
gi|403519212|ref|YP_006653346.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BPC006]
gi|418540516|ref|ZP_13106052.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1258a]
gi|418546765|ref|ZP_13111959.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1258b]
gi|126227541|gb|ABN91081.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
gi|157937000|gb|EDO92670.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pasteur 52237]
gi|169654786|gb|EDS87479.1| DEAD/DEAH box helicase [Burkholderia pseudomallei S13]
gi|184209833|gb|EDU06876.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1655]
gi|237504437|gb|ACQ96755.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
gi|242139069|gb|EES25471.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
gi|385361649|gb|EIF67530.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1258a]
gi|385363056|gb|EIF68839.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1258b]
gi|403074855|gb|AFR16435.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BPC006]
Length = 513
Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust.
Identities = 233/406 (57%), Positives = 305/406 (75%), Gaps = 8/406 (1%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F S+GL ++ AL GY KPT VQ++AIPA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 41 TFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 100
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKP---AQPRMLVLTPTRELALQVTAATE 118
+FA + + + ER +P A+P +LVLTPTRELA+QVT A
Sbjct: 101 RFAQLQKAQAQQPRAPREGQPG-----ERRGRRPQPVARPGLLVLTPTRELAMQVTTAAS 155
Query: 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
YG ++++++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRL+DH+ G+I+ S L++LVL
Sbjct: 156 TYGKHLRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVL 215
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI+DI+ IV ATP TRQTMLFSATLDG +G++ + KDP +++ +
Sbjct: 216 DEADRMLDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIE 275
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ NI Q++ +VDD HK+RLLD+LLRD + QA++FTATK DAD +A RL +GF +A
Sbjct: 276 SRSNIAQTVHYVDDRDHKDRLLDHLLRDVALDQAIIFTATKIDADQLAGRLADAGFQSAA 335
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRIG
Sbjct: 336 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 395
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
RTGRAGR+G AVSLV+HAE+ +K+IERF + +P+ V+ GFEP+K
Sbjct: 396 RTGRAGRSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEPRK 441
>gi|126439983|ref|YP_001059500.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
gi|126219476|gb|ABN82982.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
Length = 514
Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust.
Identities = 233/406 (57%), Positives = 305/406 (75%), Gaps = 8/406 (1%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F S+GL ++ AL GY KPT VQ++AIPA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 43 TFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 102
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKP---AQPRMLVLTPTRELALQVTAATE 118
+FA + + + ER +P A+P +LVLTPTRELA+QVT A
Sbjct: 103 RFAQLQKAQAQQPRAPREGQPG-----ERRGRRPQPVARPGLLVLTPTRELAMQVTTAAS 157
Query: 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
YG ++++++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRL+DH+ G+I+ S L++LVL
Sbjct: 158 TYGKHLRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVL 217
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI+DI+ IV ATP TRQTMLFSATLDG +G++ + KDP +++ +
Sbjct: 218 DEADRMLDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIE 277
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ NI Q++ +VDD HK+RLLD+LLRD + QA++FTATK DAD +A RL +GF +A
Sbjct: 278 SRSNIAQTVHYVDDRDHKDRLLDHLLRDVALDQAIIFTATKIDADQLAGRLADAGFQSAA 337
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRIG
Sbjct: 338 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 397
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
RTGRAGR+G AVSLV+HAE+ +K+IERF + +P+ V+ GFEP+K
Sbjct: 398 RTGRAGRSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEPRK 443
>gi|53719796|ref|YP_108782.1| ATP-dependent RNA helicase [Burkholderia pseudomallei K96243]
gi|53724110|ref|YP_103224.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
gi|67639288|ref|ZP_00438162.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
gi|121599488|ref|YP_993402.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
gi|124385746|ref|YP_001029162.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
gi|126448376|ref|YP_001080910.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
gi|166999673|ref|ZP_02265508.1| DEAD/DEAH box helicase [Burkholderia mallei PRL-20]
gi|167903298|ref|ZP_02490503.1| ATP-dependent RNA helicase [Burkholderia pseudomallei NCTC 13177]
gi|217421948|ref|ZP_03453452.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
gi|254177947|ref|ZP_04884602.1| DEAD/DEAH box helicase [Burkholderia mallei ATCC 10399]
gi|254200174|ref|ZP_04906540.1| DEAD/DEAH box helicase [Burkholderia mallei FMH]
gi|254206512|ref|ZP_04912864.1| DEAD/DEAH box helicase [Burkholderia mallei JHU]
gi|254257950|ref|ZP_04949004.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
gi|254297179|ref|ZP_04964632.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 406e]
gi|254358076|ref|ZP_04974349.1| DEAD/DEAH box helicase [Burkholderia mallei 2002721280]
gi|386861300|ref|YP_006274249.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1026b]
gi|418382709|ref|ZP_12966643.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 354a]
gi|418538458|ref|ZP_13104067.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1026a]
gi|418553007|ref|ZP_13117849.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 354e]
gi|52210210|emb|CAH36189.1| putative ATP-dependent RNA helicase [Burkholderia pseudomallei
K96243]
gi|52427533|gb|AAU48126.1| ATP-dependent RNA helicase RhlE, putative [Burkholderia mallei ATCC
23344]
gi|121228298|gb|ABM50816.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
gi|124293766|gb|ABN03035.1| putative ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC
10229]
gi|126241246|gb|ABO04339.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
gi|147749770|gb|EDK56844.1| DEAD/DEAH box helicase [Burkholderia mallei FMH]
gi|147753955|gb|EDK61020.1| DEAD/DEAH box helicase [Burkholderia mallei JHU]
gi|148027203|gb|EDK85224.1| DEAD/DEAH box helicase [Burkholderia mallei 2002721280]
gi|157807478|gb|EDO84648.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 406e]
gi|160698986|gb|EDP88956.1| DEAD/DEAH box helicase [Burkholderia mallei ATCC 10399]
gi|217395690|gb|EEC35708.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
gi|238519823|gb|EEP83289.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
gi|243064323|gb|EES46509.1| DEAD/DEAH box helicase [Burkholderia mallei PRL-20]
gi|254216639|gb|EET06023.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
gi|385347744|gb|EIF54394.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1026a]
gi|385372277|gb|EIF77399.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 354e]
gi|385377051|gb|EIF81671.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 354a]
gi|385658428|gb|AFI65851.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1026b]
Length = 516
Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust.
Identities = 233/406 (57%), Positives = 305/406 (75%), Gaps = 8/406 (1%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F S+GL ++ AL GY KPT VQ++AIPA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 44 TFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 103
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKP---AQPRMLVLTPTRELALQVTAATE 118
+FA + + + ER +P A+P +LVLTPTRELA+QVT A
Sbjct: 104 RFAQLQKAQAQQPRAPREGQPG-----ERRGRRPQPVARPGLLVLTPTRELAMQVTTAAS 158
Query: 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
YG ++++++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRL+DH+ G+I+ S L++LVL
Sbjct: 159 TYGKHLRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVL 218
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI+DI+ IV ATP TRQTMLFSATLDG +G++ + KDP +++ +
Sbjct: 219 DEADRMLDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIE 278
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ NI Q++ +VDD HK+RLLD+LLRD + QA++FTATK DAD +A RL +GF +A
Sbjct: 279 SRSNIAQTVHYVDDRDHKDRLLDHLLRDVALDQAIIFTATKIDADQLAGRLADAGFQSAA 338
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRIG
Sbjct: 339 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 398
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
RTGRAGR+G AVSLV+HAE+ +K+IERF + +P+ V+ GFEP+K
Sbjct: 399 RTGRAGRSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEPRK 444
>gi|167894911|ref|ZP_02482313.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 7894]
Length = 483
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 233/406 (57%), Positives = 305/406 (75%), Gaps = 8/406 (1%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F S+GL ++ AL GY KPT VQ++AIPA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 44 TFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 103
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKP---AQPRMLVLTPTRELALQVTAATE 118
+FA + + + ER +P A+P +LVLTPTRELA+QVT A
Sbjct: 104 RFAQLQKAQAQQPRAPREGQPG-----ERRGRRPQPVARPGLLVLTPTRELAMQVTTAAS 158
Query: 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
YG ++++++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRL+DH+ G+I+ S L++LVL
Sbjct: 159 TYGKHLRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVL 218
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI+DI+ IV ATP TRQTMLFSATLDG +G++ + KDP +++ +
Sbjct: 219 DEADRMLDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIE 278
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ NI Q++ +VDD HK+RLLD+LLRD + QA++FTATK DAD +A RL +GF +A
Sbjct: 279 SRSNIAQTVHYVDDRDHKDRLLDHLLRDVALDQAIIFTATKIDADQLAGRLADAGFQSAA 338
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRIG
Sbjct: 339 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 398
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
RTGRAGR+G AVSLV+HAE+ +K+IERF + +P+ V+ GFEP+K
Sbjct: 399 RTGRAGRSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEPRK 444
>gi|167739208|ref|ZP_02411982.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 14]
Length = 460
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 233/406 (57%), Positives = 305/406 (75%), Gaps = 8/406 (1%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F S+GL ++ AL GY KPT VQ++AIPA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 41 TFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 100
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKP---AQPRMLVLTPTRELALQVTAATE 118
+FA + + + ER +P A+P +LVLTPTRELA+QVT A
Sbjct: 101 RFAQLQKAQAQQPRAPREGQPG-----ERRGRRPQPVARPGLLVLTPTRELAMQVTTAAS 155
Query: 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
YG ++++++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRL+DH+ G+I+ S L++LVL
Sbjct: 156 TYGKHLRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVL 215
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI+DI+ IV ATP TRQTMLFSATLDG +G++ + KDP +++ +
Sbjct: 216 DEADRMLDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIE 275
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ NI Q++ +VDD HK+RLLD+LLRD + QA++FTATK DAD +A RL +GF +A
Sbjct: 276 SRSNIAQTVHYVDDRDHKDRLLDHLLRDVALDQAIIFTATKIDADQLAGRLADAGFQSAA 335
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRIG
Sbjct: 336 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 395
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
RTGRAGR+G AVSLV+HAE+ +K+IERF + +P+ V+ GFEP+K
Sbjct: 396 RTGRAGRSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEPRK 441
>gi|167581446|ref|ZP_02374320.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis TXDOH]
Length = 517
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 232/406 (57%), Positives = 305/406 (75%), Gaps = 8/406 (1%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F S+GL ++ AL GY KPT VQ++AIPA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 48 TFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 107
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKP---AQPRMLVLTPTRELALQVTAATE 118
+FA + + + ER +P A+P +LVLTPTRELA+QVT A
Sbjct: 108 RFAQLQKAQAQQPRAPREAQPG-----ERRGRRPQPVARPGLLVLTPTRELAMQVTTAAS 162
Query: 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
YG ++++++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRL+DH+ G+I+ S L++LVL
Sbjct: 163 TYGKHLRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVL 222
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI+DI+ IV ATP +RQTMLFSATLDG +G++ + KDP +++ +
Sbjct: 223 DEADRMLDMGFIDDIDTIVAATPASRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIE 282
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ NI Q++ +VDD HK+RLLD+LLRD + QA++FTATK DAD +A RL +GF +A
Sbjct: 283 SRSNIAQTVHYVDDRDHKDRLLDHLLRDTALDQAIIFTATKIDADQLAGRLADAGFQSAA 342
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRIG
Sbjct: 343 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 402
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
RTGRAGR+G AVSLV+HAE+ +K+IERF + +P+ V+ GFEP+K
Sbjct: 403 RTGRAGRSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEPRK 448
>gi|257138731|ref|ZP_05586993.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
Length = 515
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 232/406 (57%), Positives = 305/406 (75%), Gaps = 8/406 (1%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F S+GL ++ AL GY KPT VQ++AIPA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 46 TFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 105
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKP---AQPRMLVLTPTRELALQVTAATE 118
+FA + + + ER +P A+P +LVLTPTRELA+QVT A
Sbjct: 106 RFAQLQKAQAQQPRAPREAQPG-----ERRGRRPQPVARPGLLVLTPTRELAMQVTTAAS 160
Query: 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
YG ++++++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRL+DH+ G+I+ S L++LVL
Sbjct: 161 TYGKHLRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVL 220
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI+DI+ IV ATP +RQTMLFSATLDG +G++ + KDP +++ +
Sbjct: 221 DEADRMLDMGFIDDIDTIVAATPASRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIE 280
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ NI Q++ +VDD HK+RLLD+LLRD + QA++FTATK DAD +A RL +GF +A
Sbjct: 281 SRSNIAQTVHYVDDRDHKDRLLDHLLRDTALDQAIIFTATKIDADQLAGRLADAGFQSAA 340
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRIG
Sbjct: 341 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 400
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
RTGRAGR+G AVSLV+HAE+ +K+IERF + +P+ V+ GFEP+K
Sbjct: 401 RTGRAGRSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEPRK 446
>gi|167619557|ref|ZP_02388188.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis Bt4]
Length = 454
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 232/406 (57%), Positives = 305/406 (75%), Gaps = 8/406 (1%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F S+GL ++ AL GY KPT VQ++AIPA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 46 TFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 105
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKP---AQPRMLVLTPTRELALQVTAATE 118
+FA + + + ER +P A+P +LVLTPTRELA+QVT A
Sbjct: 106 RFAQLQKAQAQQPRAPREAQPG-----ERRGRRPQPVARPGLLVLTPTRELAMQVTTAAS 160
Query: 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
YG ++++++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRL+DH+ G+I+ S L++LVL
Sbjct: 161 TYGKHLRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVL 220
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI+DI+ IV ATP +RQTMLFSATLDG +G++ + KDP +++ +
Sbjct: 221 DEADRMLDMGFIDDIDTIVAATPASRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIE 280
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ NI Q++ +VDD HK+RLLD+LLRD + QA++FTATK DAD +A RL +GF +A
Sbjct: 281 SRSNIAQTVHYVDDRDHKDRLLDHLLRDTALDQAIIFTATKIDADQLAGRLADAGFQSAA 340
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRIG
Sbjct: 341 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 400
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
RTGRAGR+G AVSLV+HAE+ +K+IERF + +P+ V+ GFEP+K
Sbjct: 401 RTGRAGRSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEPRK 446
>gi|83719456|ref|YP_442523.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
gi|83653281|gb|ABC37344.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
Length = 482
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 232/406 (57%), Positives = 305/406 (75%), Gaps = 8/406 (1%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F S+GL ++ AL GY KPT VQ++AIPA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 13 TFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 72
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKP---AQPRMLVLTPTRELALQVTAATE 118
+FA + + + ER +P A+P +LVLTPTRELA+QVT A
Sbjct: 73 RFAQLQKAQAQQPRAPREAQPG-----ERRGRRPQPVARPGLLVLTPTRELAMQVTTAAS 127
Query: 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
YG ++++++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRL+DH+ G+I+ S L++LVL
Sbjct: 128 TYGKHLRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVL 187
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI+DI+ IV ATP +RQTMLFSATLDG +G++ + KDP +++ +
Sbjct: 188 DEADRMLDMGFIDDIDTIVAATPASRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIE 247
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ NI Q++ +VDD HK+RLLD+LLRD + QA++FTATK DAD +A RL +GF +A
Sbjct: 248 SRSNIAQTVHYVDDRDHKDRLLDHLLRDTALDQAIIFTATKIDADQLAGRLADAGFQSAA 307
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRIG
Sbjct: 308 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 367
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
RTGRAGR+G AVSLV+HAE+ +K+IERF + +P+ V+ GFEP+K
Sbjct: 368 RTGRAGRSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEPRK 413
>gi|377820473|ref|YP_004976844.1| DEAD/DEAH box helicase [Burkholderia sp. YI23]
gi|357935308|gb|AET88867.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
YI23]
Length = 546
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/407 (56%), Positives = 308/407 (75%), Gaps = 12/407 (2%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F+S+GL ++ AL GY PT VQE+AIPAA++GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 38 SFESLGLSAEIVSALTAAGYQNPTPVQERAIPAALAGRDLLVSSPTGSGKTAAFMLPAIE 97
Query: 62 KFAS---SKNKIPVMKKNLNQNNNKIYTHKERLRFKP-AQPRMLVLTPTRELALQVTAAT 117
KFA + + P ++ N + + R +P A+P++LVLTPTRELA+QV+ A
Sbjct: 98 KFAQMQKQEAQQPRAPRDPNAKSGR--------RPQPIARPKLLVLTPTRELAMQVSTAA 149
Query: 118 ERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
YG ++++++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRLIDH+ G+I+ S L +LV
Sbjct: 150 TTYGKHLRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSELNMLV 209
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
LDEADRMLDMGFI DIE IVDATP +RQT+LFSAT+D + ++ + KDP +++
Sbjct: 210 LDEADRMLDMGFIEDIETIVDATPASRQTLLFSATIDSKITSLTGRLLKDPERIEIVQRL 269
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+ + NI Q++ +VDD HK+RLLD+LLR + QA+VFTATK DAD+IA+RL +GF +A
Sbjct: 270 EAKSNIAQTVHYVDDRDHKDRLLDHLLRADELDQAIVFTATKSDADLIANRLADAGFESA 329
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRI
Sbjct: 330 ALHGDLPQGARNRTIRALREKRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRI 389
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRTGRAGR+G AVSLV++AE +K+IERF + +P+ + GFEP+K
Sbjct: 390 GRTGRAGRSGTAVSLVHYAEMGALKRIERFVRAPLPVNTVAGFEPRK 436
>gi|413962917|ref|ZP_11402144.1| DEAD/DEAH box helicase [Burkholderia sp. SJ98]
gi|413928749|gb|EKS68037.1| DEAD/DEAH box helicase [Burkholderia sp. SJ98]
Length = 548
Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/403 (57%), Positives = 308/403 (76%), Gaps = 6/403 (1%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F+S+GL ++ AL GY PT VQ++AIPAA++GRDL+VSS TGSGKTAAFMLPA+ K
Sbjct: 40 FESLGLSADIVSALTAAGYESPTPVQQRAIPAALAGRDLLVSSPTGSGKTAAFMLPAIEK 99
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKP-AQPRMLVLTPTRELALQVTAATERYG 121
FA + K+ + ++ N R +P A+P++LVLTPTRELA+QV+ A YG
Sbjct: 100 FAQLQ-KLEAQQPRAPRDPNAARGR----RPQPIARPKLLVLTPTRELAMQVSTAATTYG 154
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
++++++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRLIDH+ G+I+ S L +LVLDEA
Sbjct: 155 KHLRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSELNMLVLDEA 214
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGFI DIE IVDATP +RQT+LFSAT+D + ++ + KDP +++ + +
Sbjct: 215 DRMLDMGFIEDIETIVDATPASRQTLLFSATIDSKITSLTGRLLKDPERIEIVQKLEAKS 274
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
NI Q++ +VDD HK+RLLD+LLR + + QA+VFTATK DAD+IA+RL +GF +A LHG
Sbjct: 275 NIAQTVHYVDDRDHKDRLLDHLLRGEGLDQAIVFTATKSDADLIANRLADAGFESAALHG 334
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
DL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRIGRTG
Sbjct: 335 DLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTG 394
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
RAGR+G AVSLV++AE +K+IERF + +P+ V+ GFEP+K
Sbjct: 395 RAGRSGTAVSLVHYAEMGALKRIERFVRAPLPVNVVAGFEPRK 437
>gi|374367553|ref|ZP_09625614.1| ATP-dependent RNA helicase [Cupriavidus basilensis OR16]
gi|373100856|gb|EHP41916.1| ATP-dependent RNA helicase [Cupriavidus basilensis OR16]
Length = 659
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/404 (56%), Positives = 301/404 (74%), Gaps = 7/404 (1%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F +GL E +L+ALV++ YT PT VQ QAIPA ++GRDL+VSSQTGSGKT AF+LPA+
Sbjct: 61 GFAKLGLEEAILRALVELNYTTPTPVQAQAIPAFLAGRDLLVSSQTGSGKTGAFILPAIQ 120
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHK-ERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + + N ++++ + K +R R PAQP +LVLTPTRELALQVT AT +Y
Sbjct: 121 RISEKASP------NRPRSDDPVKRMKGKRPRPSPAQPALLVLTPTRELALQVTEATAKY 174
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++++I SILGGMPY +Q+ LS+ P+IL+ATPGRL+DH+ +G+I+ S L +LV DE
Sbjct: 175 GRHLRRIVCASILGGMPYPKQLAALSKMPDILVATPGRLLDHVEAGRIDLSQLDMLVFDE 234
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF +DI+ IV ATP +RQT++FSATLDG + +A +DP +++ + Q
Sbjct: 235 ADRMLDMGFADDIDAIVAATPASRQTLMFSATLDGRIAQLASRQLRDPQRIEIAATRADQ 294
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NI Q + F DD+ HK +LLD+LLRD + QA+VFTATKRDAD +A+RL+ +GF A LH
Sbjct: 295 SNIEQRLHFTDDMSHKEKLLDHLLRDATLKQAIVFTATKRDADSLAERLSDTGFAAGALH 354
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+ Q ARNRTL +LRRG ++ILVATDVAARGIDVP ITHV N+DLPK EDYVHRIGRT
Sbjct: 355 GDMTQGARNRTLTSLRRGNLRILVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRT 414
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRAGR+G A++LVNH + K+IERFT ++ VI G EP++
Sbjct: 415 GRAGRSGVAINLVNHGDMFQWKRIERFTNNRVDASVIEGLEPRR 458
>gi|421746736|ref|ZP_16184510.1| ATP-dependent RNA helicase [Cupriavidus necator HPC(L)]
gi|409774699|gb|EKN56282.1| ATP-dependent RNA helicase [Cupriavidus necator HPC(L)]
Length = 606
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 230/404 (56%), Positives = 299/404 (74%), Gaps = 7/404 (1%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F ++GL +L+AL + YT PT VQ QAIPA ++GRDL+VSSQTGSGKTAAFMLPA+
Sbjct: 48 GFAALGLDAAILRALAEANYTTPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPAIQ 107
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHK-ERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ S+ P N + + + K +R R PAQP +LVLTPTRELALQVT A +Y
Sbjct: 108 RI--SERPAP----NRPRADEPVKRMKGKRPRPAPAQPSLLVLTPTRELALQVTDAAAKY 161
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++++I SILGGMPY +Q+ +LS+ P+IL+ATPGRL+DH+++G+I+ S L +LV DE
Sbjct: 162 GRHLRRIICASILGGMPYPKQLAMLSKMPDILVATPGRLLDHIDAGRIDLSQLDMLVFDE 221
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF +DI+ IV ATP TRQT++FSAT+DG + +A +DP +++ + Q
Sbjct: 222 ADRMLDMGFSDDIDAIVAATPATRQTLMFSATVDGRIAQLAARQLRDPQRIEIAAARADQ 281
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NI Q + F DD+ HK RLLD+LLRD + QA+VFTATKRDAD +A+RL+ +GF A LH
Sbjct: 282 SNIEQRLHFTDDMSHKERLLDHLLRDASLKQAIVFTATKRDADSLAERLSDTGFAAGALH 341
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+ Q ARNRTL LRRG +++LVATDVAARGIDVP ITHV N+DLPK EDYVHRIGRT
Sbjct: 342 GDMTQGARNRTLTALRRGNLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRT 401
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRAGR+G A++LVNH + K+IERFT ++ VI G EP++
Sbjct: 402 GRAGRSGVAINLVNHNDAFQWKRIERFTNNRVTASVIEGLEPRR 445
>gi|350545971|ref|ZP_08915408.1| ATP-dependent RNA helicase NGO0650 [Candidatus Burkholderia kirkii
UZHbot1]
gi|350526259|emb|CCD40935.1| ATP-dependent RNA helicase NGO0650 [Candidatus Burkholderia kirkii
UZHbot1]
Length = 544
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 232/406 (57%), Positives = 303/406 (74%), Gaps = 10/406 (2%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F+S+GL ++ AL GY PT VQ++AIPAA++GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 105 TFESLGLSAEIVSALTAAGYAAPTPVQQRAIPAALAGRDLLVSSPTGSGKTAAFMLPAIE 164
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKP---AQPRMLVLTPTRELALQVTAATE 118
KFA + K+ Q + R R +P A+PR+LVLTPTRELA+QV+ A
Sbjct: 165 KFAQ------LQKQEAQQLRAPRDPNAPRGR-RPQPIARPRLLVLTPTRELAMQVSTAAT 217
Query: 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
YG ++ +++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRLIDH+ +I+ S L + VL
Sbjct: 218 TYGKHLHRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERSRIDLSELNMFVL 277
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI DIE IVDATP T QT+LFSAT+DG + +M + KDP +++ +
Sbjct: 278 DEADRMLDMGFIEDIETIVDATPETHQTLLFSATIDGKISSMTGRLLKDPERIEIVQKLE 337
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ NI Q++ +VDD HK+RLL++LLRD + QA+VFTATK DAD+IA+RL +GF +A
Sbjct: 338 AKSNIAQTVHYVDDRDHKDRLLNHLLRDTELDQAIVFTATKSDADLIANRLADAGFESAA 397
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
LHGDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRIG
Sbjct: 398 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 457
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
RTGRAGR+G AVSLV++AE +K+IERF + +P+ V+ GFE +K
Sbjct: 458 RTGRAGRSGTAVSLVHYAEMGALKRIERFVRSPLPVNVVAGFESRK 503
>gi|344174090|emb|CCA85871.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
RNA helicase(C-terminal)(rhlE-like) [Ralstonia syzygii
R24]
Length = 658
Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust.
Identities = 222/399 (55%), Positives = 295/399 (73%), Gaps = 5/399 (1%)
Query: 6 IGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFAS 65
+GL E +++AL +V YT+PT VQ QAIPA +SG DL+V+SQTGSGKTAAFMLPA+ + +
Sbjct: 89 LGLDERIVRALGEVNYTQPTPVQAQAIPACLSGSDLLVTSQTGSGKTAAFMLPAIQRISE 148
Query: 66 SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMK 125
+ + R R PA+P +LVLTPTRELALQVT A +YG +++
Sbjct: 149 QPEP-----QRPRADGPPQRVKGRRPRPSPAKPSLLVLTPTRELALQVTTAASQYGRHLR 203
Query: 126 KIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRML 185
+I SILGGMPY +Q+ +L+R P+I++ATPGRL+DH++SG+I+ S L +LV DEADRML
Sbjct: 204 RIVCASILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRML 263
Query: 186 DMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQ 245
DMGF +DIE IV ATP TRQ ++FSAT+D + +AE + +DP +++ + + Q NI +
Sbjct: 264 DMGFADDIEAIVGATPATRQMLMFSATMDRRIEQLAERMMRDPQRIEIAAAKIDQSNIEE 323
Query: 246 SILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQ 305
+ F DD+ HK +LLD+LLRD + QA+VFTATKRDAD +A+RL +GF A LHGD+HQ
Sbjct: 324 RLHFTDDLSHKQQLLDHLLRDATLKQAIVFTATKRDADSLAERLTETGFSAGALHGDMHQ 383
Query: 306 NARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGR 365
ARNRTL LRRG++++LVATDVAARGIDVP ITHV N+DLPK EDYVHRIGRTGRAGR
Sbjct: 384 GARNRTLTALRRGQLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGR 443
Query: 366 NGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
+G A++LVNH + ++IERF ++I V+ G EPK+
Sbjct: 444 SGIAINLVNHGDTFQWRRIERFVDRRIDATVVEGLEPKR 482
>gi|299066924|emb|CBJ38119.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
RNA helicase(C-terminal) (rhlE-like) [Ralstonia
solanacearum CMR15]
Length = 613
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 223/399 (55%), Positives = 300/399 (75%), Gaps = 5/399 (1%)
Query: 6 IGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFAS 65
+GL E + +AL ++ YT+PT VQ QAIPA +SGRDL+V+SQTGSGKTAAFMLPA+ +
Sbjct: 35 LGLDERIARALGELNYTQPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFMLPAIQRI-- 92
Query: 66 SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMK 125
S+ P + + + R R +PA+P +LVLTPTRELALQVT AT +YG +++
Sbjct: 93 SEQPEPQRPR---ADGPQQRVKGRRPRPEPAKPSLLVLTPTRELALQVTTATAQYGRHLR 149
Query: 126 KIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRML 185
+I SILGGMPY +Q+ +L+R P+I++ATPGRL+DH++SG+I+ S L +LV DEADRML
Sbjct: 150 RIVCASILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRML 209
Query: 186 DMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQ 245
DMGF +DIE IV ATP +RQ ++FSAT+D + +AE + ++P +++ + + Q NI +
Sbjct: 210 DMGFADDIEAIVGATPASRQMLMFSATMDRRIEQLAERMMREPQRIEIAAAKVDQSNIEE 269
Query: 246 SILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQ 305
+ F DD+ HK +LLD+LLRD + QA+VFTATKRDAD +A+RL +GF A LHGD+HQ
Sbjct: 270 RLHFTDDLSHKQQLLDHLLRDATLKQAIVFTATKRDADSLAERLTETGFSAGALHGDMHQ 329
Query: 306 NARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGR 365
ARNRTL LRRG++++LVATDVAARGIDVP ITHV N+DLPK EDYVHRIGRTGRAGR
Sbjct: 330 GARNRTLTALRRGQLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGR 389
Query: 366 NGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
+G A++LVNH + ++IERF ++I V+ G EPK+
Sbjct: 390 SGIAINLVNHGDTFQWRRIERFVDRRIDATVVEGLEPKR 428
>gi|421899355|ref|ZP_16329720.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
gi|206590561|emb|CAQ37523.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
Length = 633
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 223/402 (55%), Positives = 299/402 (74%), Gaps = 5/402 (1%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F ++GL E +++AL +V YT PT VQ QAIPA +SGRDL+V+SQTGSGKTAAF+LPA+ +
Sbjct: 64 FAALGLDERIVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFILPAIQR 123
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
+ + ++ ++ R R PA+P +LVLTPTRELALQVT AT +YG
Sbjct: 124 ISEQPEP---QRPRVDGAPQRV--KGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGR 178
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
++++I SILGGMPY +Q+ +L+R P+I++ATPGRL+DH++SG+I+ S L +LV DEAD
Sbjct: 179 HLRRIVCASILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEAD 238
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLDMGF +DIE IV ATP +RQ ++FSAT+D + +AE + ++P +++ + Q N
Sbjct: 239 RMLDMGFADDIEAIVGATPESRQMLMFSATMDRRIEQLAERMMREPQRIEIAAARVDQSN 298
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
I + + F DD+ HK +LLD+LLRD + QA+VFTATKRDAD +A+RL +GF A LHGD
Sbjct: 299 IEERLHFTDDMSHKQQLLDHLLRDASLKQAIVFTATKRDADSLAERLTETGFAAGALHGD 358
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+HQ ARNRTL LRRG ++ILVATDVAARGIDVP ITHV N+DLPK EDYVHRIGRTGR
Sbjct: 359 MHQGARNRTLTALRRGHLRILVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGR 418
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
AGR+G A++LVNH + ++IERF ++I V+ G EPK+
Sbjct: 419 AGRSGIAINLVNHGDTFQWRRIERFVDRRINATVVEGLEPKR 460
>gi|241662507|ref|YP_002980867.1| DEAD/DEAH box helicase [Ralstonia pickettii 12D]
gi|240864534|gb|ACS62195.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D]
Length = 627
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 224/403 (55%), Positives = 301/403 (74%), Gaps = 7/403 (1%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F ++GL + +++AL +V YT PT VQ QAIPA +SGRDL+V+SQTGSGKTAAF+LPA+ +
Sbjct: 35 FAALGLDDRIVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFILPAIQR 94
Query: 63 FASS-KNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ + + P M + + R R PA+P +LVLTPTRELALQVT AT +YG
Sbjct: 95 ISEQPEPQRPRMDGPPQRMKGR------RPRPAPAKPSLLVLTPTRELALQVTTATAQYG 148
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
++++I SILGGMPY +Q+ +L+R P+I++ATPGRL+DH++SG+I+ S L +LV DEA
Sbjct: 149 RHLRRIVCASILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEA 208
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGF +DIE IV ATP TRQ ++FSAT+D + +AE + ++P +++ + + Q
Sbjct: 209 DRMLDMGFSDDIEAIVGATPATRQMLMFSATMDRRIEQLAERMMREPQRIEIAAAKVDQS 268
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
NI + + F DD+ HK +LLD+LLRD + QA+VFTATKRDAD +A+RL GF A LHG
Sbjct: 269 NIEERLHFTDDMSHKQQLLDHLLRDASLKQAIVFTATKRDADSLAERLTEHGFSAGALHG 328
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
D+HQ ARNRTL LRRG++++LVATDVAARGIDVP ITHV N+DLPK EDYVHRIGRTG
Sbjct: 329 DMHQGARNRTLTALRRGQLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTG 388
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
RAGR+G A++LVNH + ++IERF ++I V+ G EPK+
Sbjct: 389 RAGRSGIAINLVNHNDTFQWRRIERFVDRRIDASVVEGLEPKR 431
>gi|300692069|ref|YP_003753064.1| bifunctional DEAD/DEAH box helicase/ATP dependent RNA helicase
[Ralstonia solanacearum PSI07]
gi|299079129|emb|CBJ51797.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
RNA helicase(C-terminal) (rhlE-like) [Ralstonia
solanacearum PSI07]
Length = 614
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 222/399 (55%), Positives = 295/399 (73%), Gaps = 5/399 (1%)
Query: 6 IGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFAS 65
+GL E +++AL +V YT+PT VQ QAIPA +SG DL+V+SQTGSGKTAAFMLPA+ + +
Sbjct: 35 LGLDERIVRALGEVNYTQPTPVQAQAIPACLSGSDLLVTSQTGSGKTAAFMLPAIQRISE 94
Query: 66 SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMK 125
+ + R R PA+P +LVLTPTRELALQVT A +YG +++
Sbjct: 95 QPEP-----QRPRADGPPQRVKGRRPRPSPAKPSLLVLTPTRELALQVTTAASQYGRHLR 149
Query: 126 KIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRML 185
+I SILGGMPY +Q+ +L+R P+I++ATPGRL+DH++SG+I+ S L +LV DEADRML
Sbjct: 150 RIVCASILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRML 209
Query: 186 DMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQ 245
DMGF +DIE IV ATP TRQ ++FSAT+D + +AE + +DP +++ + + Q NI +
Sbjct: 210 DMGFADDIEAIVGATPATRQMLMFSATMDRRIEQLAERMMRDPQRIEIAAAKIDQSNIEE 269
Query: 246 SILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQ 305
+ F DD+ HK +LLD+LLRD + QA+VFTATKRDAD +A+RL +GF A LHGD+HQ
Sbjct: 270 RLHFTDDLSHKQQLLDHLLRDATLKQAIVFTATKRDADSLAERLTETGFSAGALHGDMHQ 329
Query: 306 NARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGR 365
ARNRTL LRRG++++LVATDVAARGIDVP ITHV N+DLPK EDYVHRIGRTGRAGR
Sbjct: 330 GARNRTLTALRRGQLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGR 389
Query: 366 NGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
+G A++LVNH + ++IERF ++I V+ G EPK+
Sbjct: 390 SGIAINLVNHGDTFQWRRIERFVDRRIDATVVEGLEPKR 428
>gi|83745783|ref|ZP_00942840.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
gi|207743697|ref|YP_002260089.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
gi|83727473|gb|EAP74594.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
gi|206595096|emb|CAQ62023.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
Length = 631
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 223/402 (55%), Positives = 299/402 (74%), Gaps = 5/402 (1%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F ++GL E +++AL +V YT PT VQ QAIPA +SGRDL+V+SQTGSGKTAAF+LPA+ +
Sbjct: 64 FAALGLDERIVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFILPAIQR 123
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
+ + ++ ++ R R PA+P +LVLTPTRELALQVT AT +YG
Sbjct: 124 ISEQPEP---QRPRVDGAPQRV--KGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGR 178
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
++++I SILGGMPY +Q+ +L+R P+I++ATPGRL+DH++SG+I+ S L +LV DEAD
Sbjct: 179 HLRRIVCASILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEAD 238
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLDMGF +DIE IV ATP +RQ ++FSAT+D + +AE + ++P +++ + Q N
Sbjct: 239 RMLDMGFADDIEAIVGATPESRQMLMFSATMDRRIEQLAERMMREPQRIEIAAARVDQSN 298
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
I + + F DD+ HK +LLD+LLRD + QA+VFTATKRDAD +A+RL +GF A LHGD
Sbjct: 299 IEERLHFTDDMSHKQQLLDHLLRDASLKQAIVFTATKRDADSLAERLTETGFAAGALHGD 358
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+HQ ARNRTL LRRG ++ILVATDVAARGIDVP ITHV N+DLPK EDYVHRIGRTGR
Sbjct: 359 MHQGARNRTLTALRRGHLRILVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGR 418
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
AGR+G A++LVNH + ++IERF ++I V+ G EPK+
Sbjct: 419 AGRSGIAINLVNHGDTFQWRRIERFVDRRINATVVEGLEPKR 460
>gi|187927918|ref|YP_001898405.1| DEAD/DEAH box helicase [Ralstonia pickettii 12J]
gi|309781089|ref|ZP_07675827.1| ATP-dependent RNA helicase RhlE [Ralstonia sp. 5_7_47FAA]
gi|404393998|ref|ZP_10985802.1| hypothetical protein HMPREF0989_02676 [Ralstonia sp. 5_2_56FAA]
gi|187724808|gb|ACD25973.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J]
gi|308920155|gb|EFP65814.1| ATP-dependent RNA helicase RhlE [Ralstonia sp. 5_7_47FAA]
gi|348614316|gb|EGY63868.1| hypothetical protein HMPREF0989_02676 [Ralstonia sp. 5_2_56FAA]
Length = 627
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 224/403 (55%), Positives = 301/403 (74%), Gaps = 7/403 (1%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F ++GL + +++AL +V YT PT VQ QAIPA +SGRDL+V+SQTGSGKTAAF+LPA+ +
Sbjct: 35 FAALGLDDRIVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFILPAIQR 94
Query: 63 FASS-KNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ + + P M + + R R PA+P +LVLTPTRELALQVT AT +YG
Sbjct: 95 ISEQPEPQRPRMDGPPQRMKGR------RPRPAPAKPSLLVLTPTRELALQVTTATAQYG 148
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
++++I SILGGMPY +Q+ +L+R P+I++ATPGRL+DH++SG+I+ S L +LV DEA
Sbjct: 149 RHLRRIVCASILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEA 208
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGF +DIE IV ATP TRQ ++FSAT+D + +AE + ++P +++ + + Q
Sbjct: 209 DRMLDMGFSDDIEAIVGATPATRQMLMFSATMDRRIEQLAERMMREPQRIEIAAAKVDQS 268
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
NI + + F DD+ HK +LLD+LLRD + QA+VFTATKRDAD +A+RL GF A LHG
Sbjct: 269 NIEERLHFTDDMSHKQQLLDHLLRDASLKQAIVFTATKRDADSLAERLTEHGFSAGALHG 328
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
D+HQ ARNRTL LRRG++++LVATDVAARGIDVP ITHV N+DLPK EDYVHRIGRTG
Sbjct: 329 DMHQGARNRTLTALRRGQLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTG 388
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
RAGR+G A++LVNH + ++IERF ++I V+ G EPK+
Sbjct: 389 RAGRSGIAINLVNHNDTFQWRRIERFVDRRIDASVVEGLEPKR 431
>gi|344170690|emb|CCA83116.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
RNA helicase(C-terminal)(rhlE-like) [blood disease
bacterium R229]
Length = 614
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 222/399 (55%), Positives = 295/399 (73%), Gaps = 5/399 (1%)
Query: 6 IGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFAS 65
+GL E +++AL +V YT+PT VQ QAIPA +SG DL+V+SQTGSGKTAAFMLPA+ + +
Sbjct: 35 LGLDERIVRALGEVNYTQPTPVQAQAIPACLSGSDLLVTSQTGSGKTAAFMLPAIQRISE 94
Query: 66 SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMK 125
+ + R R PA+P +LVLTPTRELALQVT A +YG +++
Sbjct: 95 QPEP-----QRPRADGPPQRVKGRRPRPSPAKPSLLVLTPTRELALQVTTAASQYGRHLR 149
Query: 126 KIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRML 185
+I SILGGMPY +Q+ +L+R P+I++ATPGRL+DH++SG+I+ S L +LV DEADRML
Sbjct: 150 RIVCASILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRML 209
Query: 186 DMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQ 245
DMGF +DIE IV ATP TRQ ++FSAT+D + +AE + +DP +++ + + Q NI +
Sbjct: 210 DMGFADDIEAIVGATPATRQMLMFSATMDRRIEQLAERMMRDPQRIEIATAKIDQSNIEE 269
Query: 246 SILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQ 305
+ F DD+ HK +LLD+LLRD + QA+VFTATKRDAD +A+RL +GF A LHGD+HQ
Sbjct: 270 RLHFTDDLSHKQQLLDHLLRDATLKQAIVFTATKRDADSLAERLTETGFSAGALHGDMHQ 329
Query: 306 NARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGR 365
ARNRTL LRRG++++LVATDVAARGIDVP ITHV N+DLPK EDYVHRIGRTGRAGR
Sbjct: 330 GARNRTLTALRRGQLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGR 389
Query: 366 NGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
+G A++LVNH + ++IERF ++I V+ G EPK+
Sbjct: 390 SGIAINLVNHGDTFQWRRIERFVDRRIDATVVEGLEPKR 428
>gi|386334065|ref|YP_006030236.1| atp-dependent rna helicase protein [Ralstonia solanacearum Po82]
gi|334196515|gb|AEG69700.1| atp-dependent rna helicase protein [Ralstonia solanacearum Po82]
Length = 599
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 224/402 (55%), Positives = 298/402 (74%), Gaps = 5/402 (1%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F ++GL E +++AL +V YT PT VQ QAIPA +SGRDL+V+SQTGSGKTAAF+LPA+ +
Sbjct: 32 FAALGLDERIVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFILPAIQR 91
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
+ + + +I R R PA+P +LVLTPTRELALQVT AT +YG
Sbjct: 92 ISEQPEP---QRPRADGAPQRI--KGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGR 146
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
++++I SILGGMPY +Q+ +L+R P+I++ATPGRL+DH++SG+I+ S L +LV DEAD
Sbjct: 147 HLRRIVCASILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEAD 206
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLDMGF +DIE IV ATP +RQ ++FSAT+D + +AE + ++P +++ + Q N
Sbjct: 207 RMLDMGFADDIEAIVGATPESRQMLMFSATMDRRIEQLAERMMREPQRIEIAAARVDQSN 266
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
I + + F DD+ HK +LLD+LLRD + QA+VFTATKRDAD +A+RL +GF A LHGD
Sbjct: 267 IEERLHFTDDMSHKQQLLDHLLRDASLKQAIVFTATKRDADSLAERLTETGFAAGALHGD 326
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+HQ ARNRTL LRRG ++ILVATDVAARGIDVP ITHV N+DLPK EDYVHRIGRTGR
Sbjct: 327 MHQGARNRTLTALRRGHLRILVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGR 386
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
AGR+G A++LVNH + ++IERF ++I V+ G EPK+
Sbjct: 387 AGRSGIAINLVNHGDTFQWRRIERFVDRRINATVVEGLEPKR 428
>gi|430809238|ref|ZP_19436353.1| ATP-dependent RNA helicase [Cupriavidus sp. HMR-1]
gi|429498382|gb|EKZ96892.1| ATP-dependent RNA helicase [Cupriavidus sp. HMR-1]
Length = 641
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/403 (55%), Positives = 293/403 (72%), Gaps = 6/403 (1%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F +GL +L+AL + Y PT VQ QAIPA ++GRDL+VSSQTGSGKTAAFMLPA+
Sbjct: 50 GFAKLGLDPAILRALAEANYNTPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPAIQ 109
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ + P + ++ +R R PAQP +LVLTPTRELALQVT A +YG
Sbjct: 110 RISEK----PATTHRPTEPAKRM--KGKRPRPSPAQPSLLVLTPTRELALQVTEAAAKYG 163
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
++++I SILGGMPY +Q+ +L+R P+IL+ATPGRL+DH+ +G+I+ S L++LV DEA
Sbjct: 164 RHLRRIVCASILGGMPYPKQLAMLARMPDILVATPGRLLDHIEAGRIDLSALEMLVFDEA 223
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGF +DI+ IV ATP +RQT++FSATLD + +A +DP +++ +
Sbjct: 224 DRMLDMGFADDIDAIVAATPASRQTLMFSATLDARIAQLASRQLRDPQRIEIAAARADHS 283
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
NI Q + F DD+ HK RLLD+LLRD + QA+VFTATKRDAD +A+RL+ +GF A LHG
Sbjct: 284 NIEQRLHFTDDMSHKERLLDHLLRDASLKQAIVFTATKRDADSLAERLSDTGFSAGALHG 343
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
D+ Q ARNRTL LRRG +++LVATDVAARGIDVP ITHV N+DLPK EDYVHRIGRTG
Sbjct: 344 DMTQGARNRTLTALRRGNLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTG 403
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
RAGR+G A++LVNH + ++IERFT +I VI GFEP++
Sbjct: 404 RAGRSGVAINLVNHGDMFQWRRIERFTNNRIDASVIEGFEPRR 446
>gi|113868657|ref|YP_727146.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
gi|113527433|emb|CAJ93778.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
Length = 646
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 227/403 (56%), Positives = 297/403 (73%), Gaps = 7/403 (1%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F ++GL +L+AL ++ Y PT VQ QAIPA ++GRDL+VSSQTGSGKTAAFMLPA+
Sbjct: 59 GFATLGLDAAILRALSELNYNTPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPAIQ 118
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ + ++P ++ +R R PAQP +LVLTPTRELALQVT A +YG
Sbjct: 119 RIS----EMPAPQRATEPAKR---MKGKRPRPSPAQPALLVLTPTRELALQVTEAAAKYG 171
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+++I SILGGMPY +Q+ L++ P+IL+ATPGRL+DH+++G+I+ S LQ+LV DEA
Sbjct: 172 RNLRRIVCASILGGMPYPKQLAALAKMPDILVATPGRLLDHIDAGRIDLSALQMLVFDEA 231
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGF +DI+ IV+ATP TRQT++FSATLD + +A +DP +++ + Q
Sbjct: 232 DRMLDMGFADDIDAIVNATPATRQTLMFSATLDARIAQLASRQLRDPQRIEIAAARADQS 291
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
+I Q + F DD+ HK RLLD+LLRD + QA+VFTATKRDAD +A+RL+ +GF A LHG
Sbjct: 292 HIEQRLHFTDDMSHKERLLDHLLRDATLKQAIVFTATKRDADSLAERLSDTGFSAGALHG 351
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
D+ Q ARNRTL LRRG +++LVATDVAARGIDVP ITHV N+DLPK EDYVHRIGRTG
Sbjct: 352 DMTQGARNRTLTALRRGNLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTG 411
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
RAGR+G A++LVNH + K+IERFT Q+I VI G EP++
Sbjct: 412 RAGRSGTAINLVNHNDMFQWKRIERFTNQRIDASVIEGLEPRR 454
>gi|94311500|ref|YP_584710.1| ATP-dependent RNA helicase [Cupriavidus metallidurans CH34]
gi|93355352|gb|ABF09441.1| ATP-dependent RNA helicase [Cupriavidus metallidurans CH34]
Length = 634
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 226/407 (55%), Positives = 293/407 (71%), Gaps = 15/407 (3%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F +GL +L+AL + Y PT VQ QAIPA ++GRDL+VSSQTGSGKTAAFMLPA+
Sbjct: 50 GFAKLGLDAAILRALAEANYNTPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPAIQ 109
Query: 62 KF----ASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAAT 117
+ A+ + P + +R R PAQP +LVLTPTRELALQVT A
Sbjct: 110 RISEKPATHRPTEPAKR-----------MKGKRPRPSPAQPSLLVLTPTRELALQVTEAA 158
Query: 118 ERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
+YG ++++I SILGGMPY +Q+ +L+R P+IL+ATPGRL+DH+ +G+I+ S L++LV
Sbjct: 159 AKYGRHLRRIVCASILGGMPYPKQLAMLARMPDILVATPGRLLDHIEAGRIDLSALEMLV 218
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
DEADRMLDMGF +DI+ IV ATP +RQT++FSATLD + +A +DP +++ +
Sbjct: 219 FDEADRMLDMGFADDIDAIVAATPASRQTLMFSATLDARIAQLASRQLRDPQRIEIAAAR 278
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
NI Q + F DD+ HK RLLD+LLRD + QA+VFTATKRDAD +A+RL+ +GF A
Sbjct: 279 ADHSNIEQRLHFTDDMSHKERLLDHLLRDASLKQAIVFTATKRDADSLAERLSDTGFSAG 338
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
LHGD+ Q ARNRTL LRRG +++LVATDVAARGIDVP ITHV N+DLPK EDYVHRI
Sbjct: 339 ALHGDMTQGARNRTLTALRRGNLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRI 398
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRTGRAGR+G A++LVNH + ++IERFT +I VI GFEP++
Sbjct: 399 GRTGRAGRSGVAINLVNHGDMFQWRRIERFTNNRIDASVIEGFEPRR 445
>gi|73540622|ref|YP_295142.1| helicase [Ralstonia eutropha JMP134]
gi|72118035|gb|AAZ60298.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia
eutropha JMP134]
Length = 632
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 229/404 (56%), Positives = 294/404 (72%), Gaps = 9/404 (2%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F ++GL +L+AL ++ Y PT VQ QAIPA ++GRDL+VSSQTGSGKTAAFMLPA+
Sbjct: 52 GFATLGLDAAILRALSELNYNNPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPAIQ 111
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHK-ERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + K N+ K +R R PAQP +LVLTPTRELALQVT A +Y
Sbjct: 112 RISE--------KPATNRPTEPAKRMKGKRPRPSPAQPSLLVLTPTRELALQVTEAAAKY 163
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G +++I SILGGMPY +Q+ LS+ P+IL+ATPGRL+DH+++G+I+ S L +LV DE
Sbjct: 164 GRNLRRIVCASILGGMPYPKQLAALSKMPDILVATPGRLLDHISAGRIDLSALDMLVFDE 223
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF +DI+ IVDATP +RQT++FSATLD + +A KDP +++ + Q
Sbjct: 224 ADRMLDMGFADDIDAIVDATPASRQTLMFSATLDARIAQLASRQLKDPQRIEIAAARADQ 283
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+I Q + F DD+ HK RLLD+LLRD + QA+VFTATKRDAD +A+RL+ +GF A LH
Sbjct: 284 SHIEQRLHFTDDMSHKERLLDHLLRDATLKQAIVFTATKRDADSLAERLSDTGFAAGALH 343
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+ Q ARNRTL LRRG +++LVATDVAARGIDVP ITHV N+DLPK EDYVHRIGRT
Sbjct: 344 GDMTQGARNRTLTALRRGNLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRT 403
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRAGR+G A++LVNH + K+IERFT +I VI G EP++
Sbjct: 404 GRAGRSGVAINLVNHNDTFQWKRIERFTNNRIDASVIEGLEPRR 447
>gi|348618460|ref|ZP_08884985.1| ATP-dependent RNA helicase rhlE [Candidatus Glomeribacter
gigasporarum BEG34]
gi|347816260|emb|CCD29732.1| ATP-dependent RNA helicase rhlE [Candidatus Glomeribacter
gigasporarum BEG34]
Length = 455
Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust.
Identities = 221/406 (54%), Positives = 299/406 (73%), Gaps = 13/406 (3%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
++F +GL +L AL GYT+PT VQ++AIP A++G DL+VSS TGSGKTAAFMLPA+
Sbjct: 23 LSFSDLGLCAEILHALNAAGYTEPTPVQQRAIPVALAGHDLLVSSPTGSGKTAAFMLPAI 82
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERL--RFKPAQPRMLVLTPTRELALQVTAATE 118
+FA + ++++ ++ R+ R PA+P +LVLTPTRELALQVT A E
Sbjct: 83 QRFA-----------QMQRSDSVAHSAHARMSRRMPPARPALLVLTPTRELALQVTHAAE 131
Query: 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
YG +++++ +S+LGG+PY +Q++LL R P+I++ATPGRL+DH+ G+I+ S L +LVL
Sbjct: 132 TYGKQLRRLRTVSVLGGVPYRKQLELLMRQPDIVVATPGRLLDHLERGRIDLSRLSMLVL 191
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI+ I I+ ATP +RQT+LFSATLD +G + + + K P ++V +
Sbjct: 192 DEADRMLDMGFIDAIRTIIAATPSSRQTLLFSATLDARIGALTQRLMKSPERIEVTHRLE 251
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I QSI +VDD HK+RLL +LL D + QA+VFTATK AD ++ L +GF++A
Sbjct: 252 QSGKIEQSIHWVDDRAHKDRLLTHLLSDTLLDQAIVFTATKSGADELSSLLCSAGFISAA 311
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
LHGDL Q+ARNRTL LR R+ +LVATDVAARGID+P ITHVFNYDLPKF EDYVHRIG
Sbjct: 312 LHGDLPQSARNRTLRALRERRVLVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 371
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
RTGRAGR+G A+S V+H ER +++IE T+Q +P+ VI GFEP++
Sbjct: 372 RTGRAGRSGTAISFVHHGERSTVRRIEHLTRQTLPVRVIEGFEPRR 417
>gi|17545671|ref|NP_519073.1| ATP-dependent RNA helicase [Ralstonia solanacearum GMI1000]
gi|17427964|emb|CAD14654.1| putative atp-dependent rna helicase protein [Ralstonia solanacearum
GMI1000]
Length = 608
Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust.
Identities = 220/399 (55%), Positives = 296/399 (74%), Gaps = 5/399 (1%)
Query: 6 IGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFAS 65
+GL E + +AL ++ YT+PT VQ QAIPA +SGRDL+V+SQTGSGKTAAFMLPA+ + +
Sbjct: 35 LGLDERIARALGELNYTQPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFMLPAIQRISE 94
Query: 66 SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMK 125
+ + + R R PA+P +LVLTPTRELALQVT AT +YG +++
Sbjct: 95 QPEP-----QRPRADGPQQRVKGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGRHLR 149
Query: 126 KIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRML 185
+I SILGGMPY +Q+ +L+R P+I++ATPGRL+DH++SG+I+ S L +LV DEADRML
Sbjct: 150 RIVCASILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRML 209
Query: 186 DMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQ 245
DMGF +DIE IV ATP +RQ ++FSAT+D + +AE + ++P +++ + Q +I +
Sbjct: 210 DMGFADDIEAIVGATPASRQMLMFSATMDRRIEQLAERMMREPQRIEIAAARIDQSHIEE 269
Query: 246 SILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQ 305
+ F DD+ HK +LLD+LLRD + QA+VFTATKRDAD +A+RL +GF A LHGD+HQ
Sbjct: 270 RLHFTDDLSHKQQLLDHLLRDATLKQAIVFTATKRDADSLAERLTETGFSAGALHGDMHQ 329
Query: 306 NARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGR 365
ARNRTL LRRG++++LVATDVAARGIDVP ITHV N+DLPK EDYVHRIGRTGRAGR
Sbjct: 330 GARNRTLTALRRGQLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGR 389
Query: 366 NGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
+G A++LVNH + ++IERF ++I V+ G EPK+
Sbjct: 390 SGIAINLVNHGDTFQWRRIERFVDRRIDATVVEGLEPKR 428
>gi|300704701|ref|YP_003746304.1| DEAD/DEAH box helicase [Ralstonia solanacearum CFBP2957]
gi|299072365|emb|CBJ43703.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
RNA helicase(C-terminal) (rhlE-like) [Ralstonia
solanacearum CFBP2957]
Length = 603
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 224/400 (56%), Positives = 298/400 (74%), Gaps = 7/400 (1%)
Query: 6 IGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFAS 65
+GL E +++AL +V YT PT VQ QAIPA +SGRDL+V+SQTGSGKTAAF+LPA+ + +
Sbjct: 35 LGLDERIVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFILPAIQRISE 94
Query: 66 S-KNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYM 124
+ + P M + + R R PA+P +LVLTPTRELALQVT AT +YG ++
Sbjct: 95 QPEPQRPRMDGAPQRVKGR------RPRPAPAKPSLLVLTPTRELALQVTTATAQYGRHL 148
Query: 125 KKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRM 184
++I SILGGMPY +Q+ +L+R P+I++ATPGRL+DH++SG+I+ S L +LV DEADRM
Sbjct: 149 RRIVCASILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRM 208
Query: 185 LDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNIT 244
LDMGF +DIE IV ATP +RQ ++FSAT+D + +AE + ++P +++ + Q NI
Sbjct: 209 LDMGFADDIEAIVGATPESRQMLMFSATMDRRIEQLAERMMREPQRIEIAAARVDQSNIE 268
Query: 245 QSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLH 304
+ + F DD+ HK +LLD+LLRD + QA+VFTATKRDAD +A+RL +GF A LHGD+H
Sbjct: 269 ERLHFTDDMSHKQQLLDHLLRDASLKQAIVFTATKRDADSLAERLTETGFAAGALHGDMH 328
Query: 305 QNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAG 364
Q ARNRTL LRRG ++ILVATDVAARGIDVP ITHV N+DLPK EDYVHRIGRTGRAG
Sbjct: 329 QGARNRTLTALRRGHLRILVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAG 388
Query: 365 RNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
R+G A++LVNH + ++IERF ++I V+ G EPK+
Sbjct: 389 RSGIAINLVNHGDTFQWRRIERFVDRRINATVVEGLEPKR 428
>gi|421888857|ref|ZP_16319933.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
RNA helicase(C-terminal)(rhlE-like) [Ralstonia
solanacearum K60-1]
gi|378965799|emb|CCF96681.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
RNA helicase(C-terminal)(rhlE-like) [Ralstonia
solanacearum K60-1]
Length = 597
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 223/399 (55%), Positives = 297/399 (74%), Gaps = 5/399 (1%)
Query: 6 IGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFAS 65
+GL E +++AL +V YT PT VQ QAIPA +SGRDL+V+SQTGSGKTAAF+LPA+ + +
Sbjct: 35 LGLDERIVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFILPAIQRISE 94
Query: 66 SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMK 125
+ ++ +I R R PA+P +LVLTPTRELALQVT AT +YG +++
Sbjct: 95 QPEP---QRPRMDGAPQRI--KGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGRHLR 149
Query: 126 KIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRML 185
+I SILGGMPY +Q+ +L+R P+I++ATPGRL+DH++SG+I+ S L +LV DEADRML
Sbjct: 150 RIVCASILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRML 209
Query: 186 DMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQ 245
DMGF +DIE IV ATP +RQ ++FSAT+D + +AE + ++P +++ + Q NI +
Sbjct: 210 DMGFADDIEAIVGATPESRQMLMFSATMDRRIEQLAERMMREPQRIEIAAAHVDQSNIEE 269
Query: 246 SILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQ 305
+ F DD+ HK +LLD+LLRD + QA+VFTATKRDAD +A+RL +GF A LHGD+HQ
Sbjct: 270 RLHFTDDMSHKQQLLDHLLRDASLKQAIVFTATKRDADSLAERLTETGFAAGALHGDMHQ 329
Query: 306 NARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGR 365
ARNRTL LRRG ++ILVATDVAARGIDVP ITHV N+DLPK EDYVHRIGRTGRAGR
Sbjct: 330 GARNRTLTALRRGHLRILVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGR 389
Query: 366 NGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
+G A++LVNH + ++IERF ++I V+ G EPK+
Sbjct: 390 SGIAINLVNHGDTFQWRRIERFVDRRINATVVEGLEPKR 428
>gi|339326701|ref|YP_004686394.1| ATP-dependent RNA helicase RhlE [Cupriavidus necator N-1]
gi|338166858|gb|AEI77913.1| ATP-dependent RNA helicase RhlE [Cupriavidus necator N-1]
Length = 656
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 226/403 (56%), Positives = 297/403 (73%), Gaps = 7/403 (1%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F ++GL +L+AL ++ Y PT VQ QAIPA ++GRDL+VSSQTGSGKTAAFMLPA+
Sbjct: 59 GFATLGLDAAILRALSELNYNTPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPAIQ 118
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ + ++P ++ +R R PAQP +LVLTPTRELALQVT A +YG
Sbjct: 119 RIS----EMPAPQRATEPAKR---MKGKRPRPSPAQPALLVLTPTRELALQVTEAAAKYG 171
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+++I SILGGMPY +Q+ L++ P+IL+ATPGRL+DH+++G+I+ S LQ+LV DEA
Sbjct: 172 RNLRRIVCASILGGMPYPKQLAALAKMPDILVATPGRLLDHIDAGRIDLSALQMLVFDEA 231
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGF +DI+ IV+ATP +RQT++FSATLD + +A +DP +++ + Q
Sbjct: 232 DRMLDMGFADDIDAIVNATPASRQTLMFSATLDARIAQLASRQLRDPQRIEIAAARADQS 291
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
+I Q + F DD+ HK RLLD+LLRD + QA+VFTATKRDAD +A+RL+ +GF A LHG
Sbjct: 292 HIEQRLHFTDDMSHKERLLDHLLRDATLKQAIVFTATKRDADSLAERLSDTGFSAGALHG 351
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
D+ Q ARNRTL LRRG +++LVATDVAARGIDVP ITHV N+DLPK EDYVHRIGRTG
Sbjct: 352 DMTQGARNRTLTALRRGNLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTG 411
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
RAGR+G A++LVNH + K+IERFT Q+I VI G EP++
Sbjct: 412 RAGRSGTAINLVNHNDMFQWKRIERFTNQRIDASVIEGLEPRR 454
>gi|194290281|ref|YP_002006188.1| DEAD/DEAH box helicase [Cupriavidus taiwanensis LMG 19424]
gi|193224116|emb|CAQ70125.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP-DEPENDENT
RNA HELICASE (C-terminal)(rhlE-like) [Cupriavidus
taiwanensis LMG 19424]
Length = 624
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 224/399 (56%), Positives = 295/399 (73%), Gaps = 7/399 (1%)
Query: 6 IGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFAS 65
+GL +L+AL + Y PT VQ QAIPA ++GRDL+VSSQTGSGKTAAFMLPA+ +
Sbjct: 54 LGLDAAILRALSDLNYNTPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPAIQRI-- 111
Query: 66 SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMK 125
+++P ++ +R R PAQP +LVLTPTRELALQVT A +YG ++
Sbjct: 112 --SEMPAPQRATEPAKR---MKGKRPRPAPAQPALLVLTPTRELALQVTEAAAKYGRNLR 166
Query: 126 KIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRML 185
+I SILGGMPY +Q+ +L++ P+IL+ATPGRL+DH+++G+I+ S LQ+LV DEADRML
Sbjct: 167 RIVCASILGGMPYPKQLAMLAKMPDILVATPGRLLDHIDAGRIDLSALQMLVFDEADRML 226
Query: 186 DMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQ 245
DMGF +DI+ IV+ATP +RQT++FSATLD + +A KDP +++ + Q +I Q
Sbjct: 227 DMGFADDIDAIVNATPASRQTLMFSATLDARIAQLASRQLKDPQRIEIAAARADQSHIEQ 286
Query: 246 SILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQ 305
+ F DD+ HK RLLD+LLRD + QA+VFTATKRDAD +A+RL+ +GF A LHGD+ Q
Sbjct: 287 RLHFTDDMSHKERLLDHLLRDASLKQAIVFTATKRDADSLAERLSDTGFSAGALHGDMTQ 346
Query: 306 NARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGR 365
ARNRTL LRRG +++LVATDVAARGIDVP ITHV N+DLPK EDYVHRIGRTGRAGR
Sbjct: 347 GARNRTLTALRRGNLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGR 406
Query: 366 NGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
+G A++LVNH + ++IERFT Q++ VI G EP++
Sbjct: 407 SGIAINLVNHNDMFQWRRIERFTNQRVDASVIEGLEPRR 445
>gi|82702922|ref|YP_412488.1| DEAD/DEAH box helicase-like protein [Nitrosospira multiformis ATCC
25196]
gi|82410987|gb|ABB75096.1| DEAD/DEAH box helicase-like protein [Nitrosospira multiformis ATCC
25196]
Length = 472
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 229/407 (56%), Positives = 294/407 (72%), Gaps = 24/407 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+S+ LH L+LKA+ GYT PT +QEQAIP ++G D++ S+QTG+GKTAAFMLPAL
Sbjct: 1 MSFESLNLHPLILKAINDAGYTSPTPIQEQAIPELLTGHDVLASAQTGTGKTAAFMLPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ AS + + PR+LVLTPTRELALQV+ AT +Y
Sbjct: 61 HRLASPS------------------------QVRSRGPRVLVLTPTRELALQVSEATAKY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ + K +SILGGMPY Q +LLS+ +IL+ATPGRLIDH+ G+I+FS L++LVLDE
Sbjct: 97 GKYLPRAKVVSILGGMPYPLQNKLLSQVVDILVATPGRLIDHIQRGRIDFSRLEMLVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI D+E+I ATP TRQT+LFSATLD + N+A + P ++V + + +
Sbjct: 157 ADRMLDMGFIEDVERIASATPATRQTLLFSATLDSAMDNVAARLLNSPKRIQVATSKARL 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NI Q + +VDDI HKN+LLD+LLRD + QA+VFTATKRDAD++AD L+ G AA LH
Sbjct: 217 NNIEQRLHYVDDISHKNQLLDHLLRDIELKQAIVFTATKRDADMLADGLSAQGHAAAALH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+ Q RNRTL LR+G I++LVATDVAARGIDV ITHV N+DLPKF EDYVHRIGRT
Sbjct: 277 GDMSQRDRNRTLIKLRQGGIRVLVATDVAARGIDVAGITHVINFDLPKFAEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIR 407
GRAG +G AVS + + +++KKIERFT Q+I V+ G EP+ + R
Sbjct: 337 GRAGASGIAVSFASSKDGIHLKKIERFTGQRIASHVVPGLEPRAKPR 383
>gi|334130202|ref|ZP_08504003.1| Putative ATP-dependent RNA helicase [Methyloversatilis universalis
FAM5]
gi|333444734|gb|EGK72679.1| Putative ATP-dependent RNA helicase [Methyloversatilis universalis
FAM5]
Length = 437
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 229/412 (55%), Positives = 295/412 (71%), Gaps = 24/412 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F +GL+E +L A+V+ GY PT VQE+A+PAA++GRDL+VSSQTGSGKTAAFM PAL
Sbjct: 1 MEFSELGLNESLLGAIVEAGYPNPTAVQEKAVPAALAGRDLMVSSQTGSGKTAAFMWPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
++ L Q++ K PR+LVLTPTRELA+QVT A +Y
Sbjct: 61 NR--------------LTQDSA----------VKARGPRILVLTPTRELAIQVTDACRKY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ KA+S++GG Y+ Q +LL++ E+L+ATPGRLID M+SG+I+F L++LVLDE
Sbjct: 97 GRGLRYAKAVSVVGGTSYVMQNKLLAQPYEVLVATPGRLIDQMDSGRIDFGRLEMLVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DIE IVD P RQT+LFSAT + V +AE +TKD +++ + +
Sbjct: 157 ADRMLDMGFIEDIEAIVDRLPEKRQTLLFSATFEPRVMRLAERLTKDAQRIEIQATAAQH 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+NI Q +LF D + HK RLLD+LLRD+ V QA+VFTATKRDAD IA++L +GFLAA LH
Sbjct: 217 ENIEQRLLFADGMGHKQRLLDHLLRDEGVEQAIVFTATKRDADQIAEQLGENGFLAAALH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+HQ RNRTL +LRRG +++LVATDVAARGIDV I+HV N+DLPK EDYVHRIGRT
Sbjct: 277 GDMHQGERNRTLGHLRRGALRVLVATDVAARGIDVAGISHVINFDLPKSAEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSR 412
GRAGR+G AVSL + + +K IERF + IP+ I G EP+ + RT R
Sbjct: 337 GRAGRSGIAVSLASGDDVRRVKTIERFIRHTIPVHTIPGLEPRVQPRTSAPR 388
>gi|393775518|ref|ZP_10363831.1| ATP-dependent RNA helicase [Ralstonia sp. PBA]
gi|392717568|gb|EIZ05129.1| ATP-dependent RNA helicase [Ralstonia sp. PBA]
Length = 586
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 223/403 (55%), Positives = 300/403 (74%), Gaps = 7/403 (1%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F ++GL+ + +AL ++ +T+PT VQ +AIPA+++GRDL+VSSQTGSGKTAAFMLPAL
Sbjct: 41 FAALGLNANLQRALAEIDFTQPTEVQAKAIPASLAGRDLLVSSQTGSGKTAAFMLPALQL 100
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHK-ERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
S+ P ++ + K +R R +PAQP +LVLTPTRELALQV+ AT ++G
Sbjct: 101 I--SEKPAPARP----HSDEPVKRMKGKRPRPQPAQPSLLVLTPTRELALQVSNATLQFG 154
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
++++I SILGGMPY +Q+ +L++ P+IL+ATPGRL+DH+ SG+I+ S L +LV DEA
Sbjct: 155 KHLRRIFCASILGGMPYPKQLAMLAKMPDILVATPGRLLDHIASGRIDLSKLDMLVFDEA 214
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGF +DI+ IV ATP TRQT++FSAT+DG + +A + +DP +++ + +
Sbjct: 215 DRMLDMGFTDDIDAIVAATPATRQTLMFSATVDGNIARLAARMLRDPQRIEIAAAKVTAN 274
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
NI Q + + DD+ HK +LLD+LLRD + QA+VFTATKRDAD +A+RL +GF A LHG
Sbjct: 275 NIEQRLHYADDLSHKQQLLDHLLRDVSLKQAIVFTATKRDADSLAERLADTGFSAGALHG 334
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
D++Q ARNR L LRRG I++LVATDVAARGIDVP ITHV N+DLPK EDYVHRIGRTG
Sbjct: 335 DMNQGARNRMLTALRRGNIQVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTG 394
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
RAGR G A++LVNH E ++IERF +++ VI G EPK+
Sbjct: 395 RAGRAGIAINLVNHGEVFQWRRIERFIDRRLDATVIAGLEPKR 437
>gi|332285792|ref|YP_004417703.1| ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
gi|330429745|gb|AEC21079.1| putative ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
Length = 550
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 224/411 (54%), Positives = 291/411 (70%), Gaps = 24/411 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F ++GL +L A++K G+T+PT VQ AIP A++G DL+VSSQTGSGKTAAFMLPAL
Sbjct: 1 MSFDTLGLAPSLLSAVLKAGFTEPTSVQAAAIPKALAGHDLMVSSQTGSGKTAAFMLPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
N+I M N K + ++LVLTPTRELA+QV AT++Y
Sbjct: 61 -------NRISNMPPN-----------------KGSGVQVLVLTPTRELAMQVAEATKQY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++K ++ ++GGMPY Q++ LSR ++L+ATPGRLIDH+ + ++N S + LVLDE
Sbjct: 97 GAHLKDLRTAVVVGGMPYGAQLKALSRRVDVLVATPGRLIDHLQAKRVNLSTVHTLVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DIE IV TP RQT+LFSATLDG + +A + +DPL ++++ ++K
Sbjct: 157 ADRMLDMGFIEDIETIVGRTPSDRQTLLFSATLDGTIARLAAKMMRDPLQIEISGQKQKH 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NITQS+L+ DD HK RLLD+LLRD + QA+VFT+TKR AD +ADRL GF AA LH
Sbjct: 217 TNITQSLLYADDNGHKMRLLDHLLRDSNLDQAIVFTSTKRGADDLADRLADQGFAAAALH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD++Q R RTL L++G+++ILVATDVAARGIDV I+H NYDLP EDYVHRIGRT
Sbjct: 277 GDMNQRQRTRTLGMLQKGKLRILVATDVAARGIDVQGISHAVNYDLPMQAEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYS 411
GRAGR+G A +L H+ER +++IE F Q IP EVI G EPKK R Y+
Sbjct: 337 GRAGRSGLAYTLATHSERHKVRRIEHFIGQPIPAEVIEGLEPKKTARPTYT 387
>gi|325983359|ref|YP_004295761.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
AL212]
gi|325532878|gb|ADZ27599.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. AL212]
Length = 457
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 225/412 (54%), Positives = 288/412 (69%), Gaps = 34/412 (8%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+ + LH +LKA+ + GYT PT +Q+QA+P I+G D++ S+QTG+GKTAAFMLPAL
Sbjct: 1 MSFEKLNLHPSILKAIQEAGYTTPTPIQQQAVPELIAGHDVMASAQTGTGKTAAFMLPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-----PRMLVLTPTRELALQVTA 115
H A+ PAQ PR+LVLTPTRELALQV+
Sbjct: 61 HTLAT-----------------------------PAQIRSRGPRVLVLTPTRELALQVSE 91
Query: 116 ATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQI 175
A ++YG Y+ +I +SILGGMPY Q +LLS+ +IL+ATPGRLIDH+ G+I+F LQ+
Sbjct: 92 AAKKYGKYLPRINVVSILGGMPYPLQNKLLSQPVDILVATPGRLIDHIQRGRIDFKRLQM 151
Query: 176 LVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNS 235
LVLDEADRMLDMGFI D+E I ATP TRQT+LFSATLD + +A + K P ++V+S
Sbjct: 152 LVLDEADRMLDMGFIEDVETIAAATPATRQTLLFSATLDNAIDRVAAKLLKTPQRIQVSS 211
Query: 236 IEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFL 295
+ K NI Q + + DD+ HKNRLLD++LRD+ + QA+VFTATKRDAD +AD L G+
Sbjct: 212 PKSKLDNIEQRLHYADDMSHKNRLLDHVLRDETLKQAIVFTATKRDADSLADTLYAQGYA 271
Query: 296 AAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVH 355
AA LHGD++Q RNRTL LR G +++LVATDVAARGIDV ITHV N+DLPKF EDYVH
Sbjct: 272 AAALHGDMNQRERNRTLTRLRNGGLRVLVATDVAARGIDVADITHVINFDLPKFAEDYVH 331
Query: 356 RIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIR 407
RIGRTGRAG G AVS + + M++ KIER+T Q+I I G EP+ + R
Sbjct: 332 RIGRTGRAGAAGIAVSFASVKDSMHLTKIERYTGQRIASHTIPGLEPRIKPR 383
>gi|30249765|ref|NP_841835.1| ATP-dependent RNA helicase protein [Nitrosomonas europaea ATCC
19718]
gi|30180802|emb|CAD85718.1| putative ATP-dependent RNA helicase protein [Nitrosomonas europaea
ATCC 19718]
Length = 457
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 221/412 (53%), Positives = 289/412 (70%), Gaps = 34/412 (8%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+++ LH ++KA++ GYT PT +Q+QAIP I+G D++ S+QTG+GKTAAFMLPAL
Sbjct: 1 MSFENLNLHPAIVKAVLAAGYTAPTPIQQQAIPDLIAGHDVMASAQTGTGKTAAFMLPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-----PRMLVLTPTRELALQVTA 115
H+ A+ PAQ PR+LVLTPTRELALQV+
Sbjct: 61 HRLAT-----------------------------PAQIRGRGPRILVLTPTRELALQVSD 91
Query: 116 ATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQI 175
A +YG ++ +I +SILGGMPY Q +LLS+ ++L+ATPGRLIDH+ G+I+FS L++
Sbjct: 92 AASKYGKFLPRINVVSILGGMPYPLQNKLLSQTVDVLVATPGRLIDHIERGRIDFSRLEM 151
Query: 176 LVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNS 235
LVLDEADRMLDMGFI D+E+I +TP TRQT+LFSATLD + +A + K P ++V +
Sbjct: 152 LVLDEADRMLDMGFIQDVERIALSTPATRQTLLFSATLDVAIEKIATRLLKAPKRIQVAA 211
Query: 236 IEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFL 295
K +I Q + +VDD+ HKNRLLD+LLRD + QA+VFTATKRDAD +AD L+ G
Sbjct: 212 QHTKLDHIEQRMHYVDDLTHKNRLLDHLLRDTTIKQAIVFTATKRDADSLADNLSSQGHK 271
Query: 296 AAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVH 355
AA +HGD+ Q R RTL LR+GR+KILVATDVAARGID+ ITHV N+DLPKF EDYVH
Sbjct: 272 AAAMHGDMTQRERTRTLTGLRQGRLKILVATDVAARGIDIADITHVINFDLPKFAEDYVH 331
Query: 356 RIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIR 407
RIGRTGRAG +G AVS + + ++K+IERFT + VI G EP+ + R
Sbjct: 332 RIGRTGRAGASGIAVSFASGKDVAHLKRIERFTGNRFEFHVIPGIEPRTKPR 383
>gi|114330892|ref|YP_747114.1| DEAD/DEAH box helicase [Nitrosomonas eutropha C91]
gi|114307906|gb|ABI59149.1| DEAD/DEAH box helicase domain protein [Nitrosomonas eutropha C91]
Length = 455
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 217/422 (51%), Positives = 295/422 (69%), Gaps = 31/422 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+++ LH ++KA++ GYT PT +Q+QAIP I+G D++ S+QTG+GKTAAFMLPAL
Sbjct: 1 MSFENLNLHPAIVKAVLAAGYTSPTPIQQQAIPELIAGHDVMASAQTGTGKTAAFMLPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ A+ + + PR+LVLTPTRELALQV+ A +Y
Sbjct: 61 HRLATPA------------------------KIQGRGPRILVLTPTRELALQVSEAASKY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ ++ +SILGGMPY Q +LLS+ ++L+ATPGRLIDH+ G+I+FS L++LVLDE
Sbjct: 97 GKFLPRVNVVSILGGMPYPLQNKLLSQVVDVLVATPGRLIDHIERGRIDFSRLEMLVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+D+E+I +TP RQT+LFSATLD + +A + K P +++ S K
Sbjct: 157 ADRMLDMGFIHDVERIASSTPTNRQTLLFSATLDTAIEKIATRLLKMPKRIQIASQHAKL 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+I Q + +VDD+ HKNRLLD+LL D + QA+VFTATKRDAD +AD L+ G AA +H
Sbjct: 217 DHIEQRMHYVDDLTHKNRLLDHLLCDTTIKQAIVFTATKRDADSLADNLSAQGHKAAAMH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+ Q R RTL LR+GR+KILVATDVAARGID+ ITHV N+DLPKF EDYVHRIGRT
Sbjct: 277 GDMTQRERTRTLTGLRQGRLKILVATDVAARGIDIADITHVINFDLPKFAEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRYRFNNNNW 420
GRAG +G AVS + + +++K+IERFT +V+ G EP+ ++ RF+ N+
Sbjct: 337 GRAGASGIAVSFASGKDGIHLKRIERFTGNHFEFQVVPGMEPR-------TKPRFSRNDD 389
Query: 421 KT 422
K+
Sbjct: 390 KS 391
>gi|291614123|ref|YP_003524280.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
ES-1]
gi|291584235|gb|ADE11893.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
ES-1]
Length = 511
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 228/412 (55%), Positives = 298/412 (72%), Gaps = 25/412 (6%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F ++GL+ +LKA+ GYT P+ +Q QAIP A++G DL+ S+QTG+GKTAAF+LPAL +
Sbjct: 20 FATLGLNPAILKAVQDAGYTVPSPIQAQAIPEALAGHDLMASAQTGTGKTAAFILPALQR 79
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
+ + +R K PR+LVLTPTRELA QV+ A +YG
Sbjct: 80 LSV----------------------ESAVRSK--GPRVLVLTPTRELAQQVSDAANKYGK 115
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
M ++K +SILGGMPY Q +LLS +IL+ATPGRLIDH+ G+I+FS L++LVLDEAD
Sbjct: 116 NM-RVKVVSILGGMPYPLQNKLLSGFVDILVATPGRLIDHIERGRIDFSRLEMLVLDEAD 174
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLDMGFI+D+E+I ATP TRQT+LFSATL+G++GN+A+ + K P + V S + K +N
Sbjct: 175 RMLDMGFIDDVERIAAATPATRQTLLFSATLEGVIGNLAQRLLKSPKRISVTSAQAKHEN 234
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
I Q +++VDD+ HKNRLLD+LLRD + QA+VFTATKRDAD +AD L+ +G AA LHGD
Sbjct: 235 IEQRLMYVDDMAHKNRLLDHLLRDVDLNQALVFTATKRDADSLADELSAAGHAAAALHGD 294
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
++Q RNRTL NLRRG +++LVATDVAARGIDV ITHV N+DLPKF EDYVHRIGRTGR
Sbjct: 295 MNQRERNRTLLNLRRGNVRVLVATDVAARGIDVAGITHVINFDLPKFAEDYVHRIGRTGR 354
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRYR 414
G +G AVS ++ + M++KKIER+T Q I + G EPK + R S+ R
Sbjct: 355 GGASGIAVSFASNRDAMHLKKIERYTGQPIKTHTVEGMEPKFKPRPASSQPR 406
>gi|34498347|ref|NP_902562.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
gi|34104201|gb|AAQ60560.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
Length = 439
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 217/405 (53%), Positives = 286/405 (70%), Gaps = 24/405 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F +G+ +L+AL GY PT VQ +A+PAAI+GRDL+VS+QTGSGKTAAF+LPAL
Sbjct: 1 MTFSDLGIAPTILRALQAAGYENPTAVQAEAVPAAIAGRDLLVSAQTGSGKTAAFLLPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
K + ER K PR+LVLTPTRELA QV Y
Sbjct: 61 TKLS------------------------ERSTAKGQGPRVLVLTPTRELAQQVEKNALEY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ ++ ++GG + Q++ LSR ++++ATPGRL+DHM SG+I+FS L++LVLDE
Sbjct: 97 GKDLRWMRTACLVGGSSFGYQIRALSRPIDLIVATPGRLMDHMRSGRIDFSRLEMLVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DIE IV ATP TRQT+LFSATLDGIVG MAE +T+DP +++ E
Sbjct: 157 ADRMLDMGFIDDIEAIVKATPETRQTVLFSATLDGIVGRMAEKMTRDPQRIEIARTETSG 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
I + +L+ DD+ HK+RLLDY+L++ Q V+F+ATK ++ +AD+L+ G+ AA LH
Sbjct: 217 GTIEEHLLYADDLNHKHRLLDYILKESGFDQCVIFSATKAYSEELADKLSDQGYSAACLH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+ Q+ RNRTL +LRRGRIK+LVATDVAARGIDVP ITHV N+DLPK EDYVHRIGRT
Sbjct: 277 GDMPQSWRNRTLNDLRRGRIKVLVATDVAARGIDVPTITHVVNFDLPKQAEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
GRAGR+G A++L E +++IE++ K+QI VI+G EP +R
Sbjct: 337 GRAGRDGTAITLAESKEFHKVRRIEQYLKRQITEGVIDGLEPTRR 381
>gi|339482174|ref|YP_004693960.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
Is79A3]
gi|338804319|gb|AEJ00561.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. Is79A3]
Length = 460
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 220/413 (53%), Positives = 289/413 (69%), Gaps = 24/413 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+ + L+ ++KA+ GYT PT +Q+QAIP +SG D++ S+QTG+GKTAAFMLPAL
Sbjct: 1 MSFEDLNLNPSIIKAIQDAGYTTPTPIQKQAIPELLSGHDIMASAQTGTGKTAAFMLPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H A+ K P PR+LVLTPTRELALQV+ A +Y
Sbjct: 61 HLLATPA-KTPGRG-----------------------PRVLVLTPTRELALQVSEAALKY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ + K +SILGGMPY Q +LLS+ +IL+ATPGRLIDH+ G+I+F L++LVLDE
Sbjct: 97 GKYLPRTKVVSILGGMPYPLQNKLLSQPVDILVATPGRLIDHIQRGRIDFKRLEMLVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+D+E I ATP TRQT+LFSATLDG + +A + K P ++V S + +
Sbjct: 157 ADRMLDMGFIDDVETIAAATPATRQTLLFSATLDGAIDKVAAKLLKSPKRIQVASQKARL 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NI Q + +VDD+ HKNRLL+++LRD+ + QA+VFTATKRDAD +AD L G+ AA LH
Sbjct: 217 DNIEQRLHYVDDMSHKNRLLNHVLRDEALKQAIVFTATKRDADTLADNLYAQGYAAAALH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD++Q R RTL LR G +++LVATDVAARGID+ ITHV N+DLPKF EDYVHRIGRT
Sbjct: 277 GDMNQRERTRTLTKLRSGGLRVLVATDVAARGIDIADITHVINFDLPKFAEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRY 413
GRAG G AVS ++ + ++ KIER+T Q+I +I G EP+ + R S +
Sbjct: 337 GRAGAAGVAVSFASNRDSAHLTKIERYTGQRIASHIIPGLEPRIKQRPQSSGF 389
>gi|389870840|ref|YP_006378259.1| ATP-dependent RNA helicase [Advenella kashmirensis WT001]
gi|388536089|gb|AFK61277.1| ATP-dependent RNA helicase [Advenella kashmirensis WT001]
Length = 546
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 217/404 (53%), Positives = 284/404 (70%), Gaps = 24/404 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL ++L AL K G+T+PT VQ +AIP A+ G+DLIVS+QTGSGKTAAFMLP+L
Sbjct: 1 MSFDSLGLSPILLAALNKAGFTQPTPVQTEAIPKALEGKDLIVSAQTGSGKTAAFMLPSL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ A M N K ++LVLTPTRELALQV AT+ Y
Sbjct: 61 HRIAG-------MPGN-----------------KGVGVQVLVLTPTRELALQVAEATKSY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G+ + ++ +++GGMPY Q++ LSR ++L+ATPGRLIDH+N+ ++N S + LVLDE
Sbjct: 97 GVGIDDLRIATVVGGMPYGAQIKALSRRVDVLVATPGRLIDHLNARRVNLSRVHTLVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DIE IV TP RQT++FSAT +G V +A ++ +PL + + ++K
Sbjct: 157 ADRMLDMGFIEDIESIVAQTPNDRQTLMFSATFEGTVARLAADMLNNPLRIDIAGQKQKH 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NITQ++L+ DD HK RLL +LLRD + QA+VFT+TKR AD +A+RL GF A+ LH
Sbjct: 217 ANITQTLLYADDSGHKLRLLGHLLRDASMDQAIVFTSTKRGADALAERLEDEGFAASALH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD++Q R RTL L++GR+++LVATDVAARGIDV I+H N+DLP EDYVHRIGRT
Sbjct: 277 GDMNQRQRTRTLGMLQKGRLRVLVATDVAARGIDVQGISHAINFDLPMQAEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRAGRNG A +L H ER I++IE+FT Q +P EVI G EP K
Sbjct: 337 GRAGRNGQAFTLATHGERHKIRRIEQFTGQSMPAEVIAGLEPVK 380
>gi|359796404|ref|ZP_09299004.1| DEAD/DEAH box helicase family protein, partial [Achromobacter
arsenitoxydans SY8]
gi|359365677|gb|EHK67374.1| DEAD/DEAH box helicase family protein, partial [Achromobacter
arsenitoxydans SY8]
Length = 530
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 217/407 (53%), Positives = 283/407 (69%), Gaps = 24/407 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+++GL +L A+ + G+T PT VQ AIP A++G DL+VSSQTGSGKTAAFMLPAL
Sbjct: 1 MSFENLGLAPALLSAVQEAGFTAPTAVQAAAIPQALAGHDLMVSSQTGSGKTAAFMLPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ A ++P K Q +LVLTPTRELALQVT AT Y
Sbjct: 61 HRIA----QMPANKGVGVQ--------------------VLVLTPTRELALQVTDATATY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G + ++ +++GGMPY Q++ LSR ++L+ATPGRLIDH+ SG++ + + LVLDE
Sbjct: 97 GRKLADLRTATVVGGMPYGAQLKALSRRVDVLVATPGRLIDHLQSGRVKLNTVHTLVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DIE IV+ P RQT+LFSATLDG V +A + ++P +++ ++K
Sbjct: 157 ADRMLDMGFIEDIETIVERLPEGRQTLLFSATLDGTVAKLAARMMREPQRIEIAGAKEKH 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NITQS+L+ DD HK +LLD++LRD + QA+VFT+TKR AD +ADRL GF AA LH
Sbjct: 217 SNITQSLLYADDASHKMQLLDHVLRDASLDQAIVFTSTKRGADDLADRLADQGFAAAALH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD++Q R RTL L+RG+++ILVATDVAARGIDV I+H N+DLP EDYVHRIGRT
Sbjct: 277 GDMNQRQRTRTLSQLQRGQLRILVATDVAARGIDVQGISHAVNFDLPMQAEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIR 407
GRAGRNG A +L H+ER +++IE + Q I EVI G EPK+ R
Sbjct: 337 GRAGRNGLAFTLATHSERHKVRRIEHYIGQSITPEVIAGLEPKRTPR 383
>gi|167586824|ref|ZP_02379212.1| DEAD/DEAH box helicase domain protein [Burkholderia ubonensis Bu]
Length = 396
Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust.
Identities = 213/365 (58%), Positives = 276/365 (75%), Gaps = 4/365 (1%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F S+GL ++ AL GY KPT VQ++AIPA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 35 TFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 94
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKP-AQPRMLVLTPTRELALQVTAATERY 120
+FA + + + +N + R +P A+P +LVLTPTRELA+QVT A Y
Sbjct: 95 RFAQLQKAQAQQPRAPREPSNG---DRRARRPQPVARPGLLVLTPTRELAMQVTTAASTY 151
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++++++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRL+DH+ G+I+ S L++LVLDE
Sbjct: 152 GKHLRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDE 211
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DIE IVDATP +RQTMLFSATLDG +G++ + KDP +++ + +
Sbjct: 212 ADRMLDMGFIEDIETIVDATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESR 271
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NI Q++ +VDD HK+RLLD+LLRD + QA++FTATK DAD +A RL +GF +A LH
Sbjct: 272 ANIAQTVHYVDDRDHKDRLLDHLLRDNALDQAIIFTATKIDADQLAGRLADAGFESAALH 331
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GDL Q ARNRT+ LR R+++LVATDVAARGID+P ITHVFNYDLPKF EDYVHRIGRT
Sbjct: 332 GDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRT 391
Query: 361 GRAGR 365
GRAGR
Sbjct: 392 GRAGR 396
>gi|422323614|ref|ZP_16404653.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
gi|317401375|gb|EFV82010.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
Length = 591
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 219/407 (53%), Positives = 281/407 (69%), Gaps = 24/407 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+++GL +L AL G+T PT VQ AIP A++G DL+VSSQTGSGKTAAFMLPAL
Sbjct: 1 MSFENLGLAPALLSALQDAGFTTPTTVQASAIPQALAGHDLMVSSQTGSGKTAAFMLPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ A ++P K Q +LVL PTRELALQVT AT Y
Sbjct: 61 HRIA----QMPANKGVGVQ--------------------VLVLAPTRELALQVTDATATY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G + ++ +++GGMPY Q++ LSR ++L+ATPGRLIDH+NSG++ + + LVLDE
Sbjct: 97 GRKLADLRTATVVGGMPYGAQLKALSRRVDVLVATPGRLIDHLNSGRVKLNTVHTLVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DIE I+ PV RQT+LFSATLDG V +A + +DP ++V ++K
Sbjct: 157 ADRMLDMGFIEDIETIISRLPVERQTLLFSATLDGTVAKLAARMMRDPQRIEVAGAKEKH 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NITQS+L+ DD HK +LLD++LRD + QA+VFT+TKR AD +AD L GF AA LH
Sbjct: 217 TNITQSLLYADDASHKMQLLDHVLRDASLDQAIVFTSTKRGADDLADHLADQGFAAAALH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD++Q R RTL L+RG+++ILVATDVAARGIDV I+H N+DLP EDYVHRIGRT
Sbjct: 277 GDMNQRQRTRTLSQLQRGQLRILVATDVAARGIDVQGISHAVNFDLPMQAEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIR 407
GRAGRNG A +L H+ER +++IE + Q I EVI G EPK+ R
Sbjct: 337 GRAGRNGLAFTLATHSERHKVRRIEHYIGQSITPEVIAGLEPKRTPR 383
>gi|421483787|ref|ZP_15931360.1| DEAD/DEAH box helicase family protein [Achromobacter piechaudii
HLE]
gi|400198070|gb|EJO31033.1| DEAD/DEAH box helicase family protein [Achromobacter piechaudii
HLE]
Length = 603
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/407 (53%), Positives = 284/407 (69%), Gaps = 24/407 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+++GL +L A+ + G++ PT VQ AIP A++G DL+VSSQTGSGKTAAFMLPAL
Sbjct: 1 MSFENLGLAPALLSAVQEAGFSTPTSVQAAAIPQALAGHDLMVSSQTGSGKTAAFMLPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ A ++P K Q +LVLTPTRELALQVT ATE Y
Sbjct: 61 HRIA----QMPANKGVGVQ--------------------VLVLTPTRELALQVTEATETY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G + ++ +++GGMPY Q++ LSR ++L+ATPGRLIDH+ SG++ + + LVLDE
Sbjct: 97 GRKLADLRTATVVGGMPYGAQLKALSRRVDVLVATPGRLIDHLQSGRVKLNTVHTLVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DIE IV P RQT+LFSATLDG + +A + +DP +++ ++K
Sbjct: 157 ADRMLDMGFIEDIETIVSRLPEDRQTLLFSATLDGTIAKLAAKMMRDPQRIEMAGAKEKH 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NITQS+L+ DD HK +LLD++LRD ++ QA+VFT+TKR AD +ADRL GF AA LH
Sbjct: 217 TNITQSLLYADDASHKMQLLDHVLRDAKLDQAIVFTSTKRGADDLADRLADQGFAAAALH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD++Q R RTL L+RG+++ILVATDVAARGIDV I+H N+DLP EDYVHRIGRT
Sbjct: 277 GDMNQRQRTRTLSQLQRGQLRILVATDVAARGIDVQGISHAVNFDLPMQAEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIR 407
GRAGR+G A +L H+ER +++IE + Q I EVI G EPK+ R
Sbjct: 337 GRAGRSGLAFTLATHSERHKVRRIEHYIGQSITPEVIAGLEPKRTPR 383
>gi|253999447|ref|YP_003051510.1| DEAD/DEAH box helicase [Methylovorus glucosetrophus SIP3-4]
gi|253986126|gb|ACT50983.1| DEAD/DEAH box helicase domain protein [Methylovorus glucosetrophus
SIP3-4]
Length = 468
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/404 (53%), Positives = 289/404 (71%), Gaps = 25/404 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F+++ LH +L+AL + GY+ PT +Q QAIP ++G DL+ S+QTG+GKTAAF LPAL
Sbjct: 3 VTFETLNLHPSILRALEEAGYSTPTPIQAQAIPEVLAGHDLMASAQTGTGKTAAFTLPAL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ A I+ K R PR+LVLTPTRELA QV A +Y
Sbjct: 63 NLLAD------------------IHPSKSR------GPRILVLTPTRELAAQVNDAARKY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G +M+ + +SI+GGMPY Q +LLS+ +IL+ATPGRL+DHM G+I+ S LQ+L+LDE
Sbjct: 99 GKFMR-ARTVSIVGGMPYPLQNKLLSQPLDILVATPGRLLDHMERGRIDMSRLQMLILDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF+ DIE+I +A P RQT++FSAT +G + N+A+ + KDP ++++ + ++K
Sbjct: 158 ADRMLDMGFMPDIERINEALPRERQTLMFSATFEGPIANIAKTLLKDPKVIQIAAQKEKH 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NI Q + FVDD+ HKN+LL++LL V QA+VFT+TKR AD++A+ L +G +A LH
Sbjct: 218 ANIEQRLHFVDDMNHKNKLLEHLLIAPDVNQAIVFTSTKRHADLLAEDLYAAGHKSAALH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+ Q ARNRTL LR G +++LVATDVAARGIDV ITHV NYDLPKF EDYVHRIGRT
Sbjct: 278 GDMTQGARNRTLTKLRHGDVRVLVATDVAARGIDVQGITHVINYDLPKFAEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRAG G AVS +HA+R ++KIE++T Q+I I VI GFEPK+
Sbjct: 338 GRAGNTGVAVSFASHADRHQLRKIEQYTGQRIEITVIEGFEPKR 381
>gi|313201469|ref|YP_004040127.1| dead/deah box helicase domain-containing protein [Methylovorus sp.
MP688]
gi|312440785|gb|ADQ84891.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. MP688]
Length = 468
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/404 (53%), Positives = 289/404 (71%), Gaps = 25/404 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F+++ LH +L+AL + GY+ PT +Q QAIP ++G DL+ S+QTG+GKTAAF LPAL
Sbjct: 3 VTFETLNLHPSILRALEEAGYSTPTPIQAQAIPEVLAGHDLMASAQTGTGKTAAFTLPAL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ A I+ K R PR+LVLTPTRELA QV A +Y
Sbjct: 63 NLLAD------------------IHPSKSR------GPRILVLTPTRELAAQVNDAARKY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G +M+ + +SI+GGMPY Q +LLS+ +IL+ATPGRL+DHM G+I+ S LQ+L+LDE
Sbjct: 99 GKFMR-ARTVSIVGGMPYPLQNKLLSQPLDILVATPGRLLDHMERGRIDMSRLQMLILDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF+ DIE+I +A P RQT++FSAT +G + N+A+ + KDP ++++ + ++K
Sbjct: 158 ADRMLDMGFMPDIERINEALPRERQTLMFSATFEGPIANIAKTLLKDPKVIQIAAQKEKH 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NI Q + FVDD+ HKN+LL++LL V QA+VFT+TKR AD++A+ L +G +A LH
Sbjct: 218 ANIEQRLHFVDDMNHKNKLLEHLLIAPDVNQAIVFTSTKRHADLLAEDLYAAGHKSAALH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+ Q ARNRTL LR G +++LVATDVAARGIDV ITHV NYDLPKF EDYVHRIGRT
Sbjct: 278 GDMTQGARNRTLTKLRHGDVRVLVATDVAARGIDVQGITHVINYDLPKFAEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRAG G AVS +HA+R ++KIE++T Q+I I VI GFEPK+
Sbjct: 338 GRAGNTGVAVSFASHADRHQLRKIEQYTGQRIEITVIEGFEPKR 381
>gi|423014591|ref|ZP_17005312.1| DEAD/DEAH box helicase family protein [Achromobacter xylosoxidans
AXX-A]
gi|338782207|gb|EGP46582.1| DEAD/DEAH box helicase family protein [Achromobacter xylosoxidans
AXX-A]
Length = 600
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 217/407 (53%), Positives = 281/407 (69%), Gaps = 24/407 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+++GL +L AL G+T PT VQ AIP A++G DL+VSSQTGSGKTAAFMLPAL
Sbjct: 1 MSFETLGLAPALLSALQDAGFTTPTPVQASAIPQALAGHDLMVSSQTGSGKTAAFMLPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ A ++P K Q +LVLTPTRELALQVT AT Y
Sbjct: 61 HRIA----QMPANKGVGVQ--------------------VLVLTPTRELALQVTEATATY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G + ++ +++GGMPY Q++ LSR ++L+ATPGRLIDH+ +G++ + + LVLDE
Sbjct: 97 GRKLADLRTATVVGGMPYGAQLKALSRRVDVLVATPGRLIDHLQAGRVKLNTVHTLVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DIE IV P RQT+LFSATLDG + +A + +DP +++ ++K
Sbjct: 157 ADRMLDMGFIEDIETIVGRLPAERQTLLFSATLDGTIAKLAARMMRDPQRIEMAGSKEKH 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NITQS+L+ DD HK +LLD++LRD + QA+VFT+TKR AD +ADRL GF AA LH
Sbjct: 217 TNITQSLLYADDASHKMQLLDHVLRDASLDQAIVFTSTKRGADDLADRLADQGFAAAALH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD++Q R RTL L+RG+++ILVATDVAARGIDV I+H N+DLP EDYVHRIGRT
Sbjct: 277 GDMNQRQRTRTLSQLQRGQLRILVATDVAARGIDVQGISHAVNFDLPMQAEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIR 407
GRAGRNG A +L H+ER +++IE + Q I EVI G EPK+ R
Sbjct: 337 GRAGRNGLAFTLATHSERHKVRRIEHYIGQSITPEVIAGLEPKRTPR 383
>gi|56477451|ref|YP_159040.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
gi|56313494|emb|CAI08139.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
Length = 463
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/405 (52%), Positives = 279/405 (68%), Gaps = 24/405 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+ +GLHE +L+A+ GYT PT VQEQAIPAA++G DL+VSS TGSGKTAAF LP+L
Sbjct: 1 MTFQELGLHEALLQAIATTGYTVPTSVQEQAIPAALAGADLMVSSHTGSGKTAAFTLPSL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ K A PR+LVLTPTRELA QV A + Y
Sbjct: 61 HRLIDRKPA------------------------PGAGPRVLVLTPTRELAQQVEKAVKTY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
++ + ++GG P+ Q +LLSR ++++ATPGRLIDH+N K+ S +++LVLDE
Sbjct: 97 ARNLRYLNTACLVGGAPFFAQAKLLSRPVDVVVATPGRLIDHLNRRKLKLSDIEVLVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF+ DIE IV ATP +RQT+LFSATLDG+VGN+A +T++P +++ + + +
Sbjct: 157 ADRMLDMGFVEDIETIVAATPASRQTLLFSATLDGVVGNLARKMTRNPQRIEIAATVENR 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NI Q +L D+I+HKNRLL+ LL + QAVVFTATKR A+ ++ L GF AA LH
Sbjct: 217 ANIEQRLLMADNIVHKNRLLESLLGGDDLQQAVVFTATKRGAEEVSLNLQEKGFSAAALH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+HQ ARNRTL+ LR+GRI +LVATDVAARGIDV I+HV N+D P+ EDYVHRIGRT
Sbjct: 277 GDMHQTARNRTLDKLRQGRIGVLVATDVAARGIDVAGISHVINFDAPRQVEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
GRAGR+G A++ E I+ IERFT + + + VI G EP +R
Sbjct: 337 GRAGRDGIAITFSGPREMGIIRAIERFTGKPLAVHVIEGLEPTQR 381
>gi|293602448|ref|ZP_06684894.1| ATP-dependent RNA helicase [Achromobacter piechaudii ATCC 43553]
gi|292819210|gb|EFF78245.1| ATP-dependent RNA helicase [Achromobacter piechaudii ATCC 43553]
Length = 597
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 216/407 (53%), Positives = 282/407 (69%), Gaps = 24/407 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+++GL +L A+ + G+ PT VQ AIP A++G DL+VSSQTGSGKTAAFMLPAL
Sbjct: 1 MSFENLGLAPALLSAVQEAGFNTPTAVQAAAIPQALAGHDLMVSSQTGSGKTAAFMLPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ A ++P K Q +LVLTPTRELALQVT AT Y
Sbjct: 61 HRIA----QMPANKGVGVQ--------------------VLVLTPTRELALQVTEATATY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G + ++ +++GGMPY Q++ LSR ++L+ATPGRLIDH+ SG++ + + LVLDE
Sbjct: 97 GRKLADLRTATVVGGMPYGAQLKALSRRVDVLVATPGRLIDHLQSGRVKLNTVHTLVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DIE IV P RQT+LFSATLDG + +A + +DP +++ ++K
Sbjct: 157 ADRMLDMGFIEDIETIVSRLPEDRQTLLFSATLDGTIAKLAAKMMRDPQRIEMAGAKEKH 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NITQS+L+ DD HK +LLD++LRD ++ QA+VFT+TKR AD +ADRL GF AA LH
Sbjct: 217 TNITQSLLYADDASHKMQLLDHVLRDAKLDQAIVFTSTKRGADDLADRLADQGFAAAALH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD++Q R RTL L+RG+++ILVATDVAARGIDV I+H N+DLP EDYVHRIGRT
Sbjct: 277 GDMNQRQRTRTLSQLQRGQLRILVATDVAARGIDVQGISHAVNFDLPMQAEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIR 407
GRAGRNG A +L H+ER +++IE + Q I EVI G EPK+ R
Sbjct: 337 GRAGRNGLAFTLATHSERHKVRRIEHYIGQSITPEVIAGLEPKRTPR 383
>gi|427823241|ref|ZP_18990303.1| putative ATP-dependent RNA helicase, partial [Bordetella
bronchiseptica Bbr77]
gi|410588506|emb|CCN03565.1| putative ATP-dependent RNA helicase, partial [Bordetella
bronchiseptica Bbr77]
Length = 471
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 216/407 (53%), Positives = 283/407 (69%), Gaps = 24/407 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+ +GL +L AL + G+T+PT VQ AIP A++G DL+VSSQTGSGKTAAFMLPAL
Sbjct: 13 MSFEDLGLAPTILSALSEAGFTEPTSVQAAAIPQAMAGADLMVSSQTGSGKTAAFMLPAL 72
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
++ A +Q NK + +LVLTPTRELALQV AT Y
Sbjct: 73 NRIA-------------HQPGNKGVGVQ-----------VLVLTPTRELALQVADATASY 108
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G + ++ +++GGMPY Q++ LSR ++L+ATPGRLIDH+ +G++ + + LVLDE
Sbjct: 109 GRNLPGLRTATVVGGMPYGAQLKALSRRVDVLVATPGRLIDHLKAGRVKLNTVHTLVLDE 168
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DIE I++ P RQT+LFSATLDG V +AE + ++P +++ +K
Sbjct: 169 ADRMLDMGFIEDIETIIERLPKERQTLLFSATLDGSVARLAERMMREPQRIEIAGHRQKH 228
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NITQS+L+ DD HK RLLD++LRD R+ QA+VFTATKR AD +ADRL GF AA LH
Sbjct: 229 ANITQSLLYADDAAHKMRLLDHVLRDARLDQAIVFTATKRGADDLADRLADQGFAAAALH 288
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD++Q R RTL L+RG++++LVATDVAARGIDV I+H N+DLP EDYVHRIGRT
Sbjct: 289 GDMNQRQRTRTLGQLQRGQLRVLVATDVAARGIDVQGISHAVNFDLPLQAEDYVHRIGRT 348
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIR 407
GRAGR+G A +L HAER +++IE + Q I EVI G EP++ R
Sbjct: 349 GRAGRDGQAFTLATHAERHKVRRIEHYIGQSINAEVIAGLEPQRTPR 395
>gi|311109370|ref|YP_003982223.1| DEAD/DEAH box helicase family protein [Achromobacter xylosoxidans
A8]
gi|310764059|gb|ADP19508.1| DEAD/DEAH box helicase family protein [Achromobacter xylosoxidans
A8]
Length = 590
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 216/407 (53%), Positives = 283/407 (69%), Gaps = 24/407 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+++GL +L A+ + G++ PT VQ AIP A++G DL+VSSQTGSGKTAAFMLPAL
Sbjct: 1 MSFENLGLAPALLSAVQEAGFSTPTPVQASAIPQALAGHDLMVSSQTGSGKTAAFMLPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ A ++P K Q +LVLTPTRELALQVT AT Y
Sbjct: 61 HRIA----QMPANKGVGVQ--------------------VLVLTPTRELALQVTDATATY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G + ++ +++GGMPY Q++ LSR ++L+ATPGRLIDH+NSG++ + + LVLDE
Sbjct: 97 GRKLADLRTATVVGGMPYGAQLKALSRRVDVLVATPGRLIDHLNSGRVKLNTVHTLVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DIE IV P RQT+LFSATLDG + +A + +DP +++ ++K
Sbjct: 157 ADRMLDMGFIEDIETIVGRLPEDRQTLLFSATLDGTIAKLAARMMRDPQRIEMAGAKEKH 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NITQS+L+ DD HK +LLD++LRD + QA+VFT+TKR AD +ADRL GF AA LH
Sbjct: 217 TNITQSLLYADDASHKMQLLDHVLRDAALDQAIVFTSTKRGADDLADRLADQGFAAAALH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD++Q R RTL L+RG+++ILVATDVAARGIDV I+H N+DLP EDYVHRIGRT
Sbjct: 277 GDMNQRQRTRTLSQLQRGQLRILVATDVAARGIDVQGISHAVNFDLPMQAEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIR 407
GRAGR+G A +L H+ER +++IE + Q I EVI G EPK+ R
Sbjct: 337 GRAGRSGLAFTLATHSERHKVRRIEHYIGQSITPEVIAGLEPKRTPR 383
>gi|33594923|ref|NP_882566.1| ATP-dependent RNA helicase [Bordetella parapertussis 12822]
gi|33564999|emb|CAE39946.1| putative ATP-dependent RNA helicase [Bordetella parapertussis]
Length = 582
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 216/407 (53%), Positives = 283/407 (69%), Gaps = 24/407 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+ +GL +L AL + G+T+PT VQ AIP A++G DL+VSSQTGSGKTAAFMLPAL
Sbjct: 37 MSFEDLGLAPTILSALSEAGFTEPTSVQAAAIPQAMAGADLMVSSQTGSGKTAAFMLPAL 96
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
++ A +Q NK + +LVLTPTRELALQV AT Y
Sbjct: 97 NRIA-------------HQPGNKGVGVQ-----------VLVLTPTRELALQVADATASY 132
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G + ++ +++GGMPY Q++ LSR ++L+ATPGRLIDH+ +G++ + + LVLDE
Sbjct: 133 GRNLPGLRTATVVGGMPYGAQLKALSRRVDVLVATPGRLIDHLKAGRVKLNTVHTLVLDE 192
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DIE I++ P RQT+LFSATLDG V +AE + ++P +++ +K
Sbjct: 193 ADRMLDMGFIEDIETIIERLPKERQTLLFSATLDGSVARLAERMMREPQRIEIAGHRQKH 252
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NITQS+L+ DD HK RLLD++LRD R+ QA+VFTATKR AD +ADRL GF AA LH
Sbjct: 253 ANITQSLLYADDAAHKMRLLDHVLRDARLDQAIVFTATKRGADDLADRLADQGFAAAALH 312
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD++Q R RTL L+RG++++LVATDVAARGIDV I+H N+DLP EDYVHRIGRT
Sbjct: 313 GDMNQRQRTRTLGQLQRGQLRVLVATDVAARGIDVQGISHAVNFDLPLQAEDYVHRIGRT 372
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIR 407
GRAGR+G A +L HAER +++IE + Q I EVI G EP++ R
Sbjct: 373 GRAGRDGQAFTLATHAERHKVRRIEHYIGQSINAEVIAGLEPQRTPR 419
>gi|91775611|ref|YP_545367.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
KT]
gi|91709598|gb|ABE49526.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
KT]
Length = 456
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 211/404 (52%), Positives = 286/404 (70%), Gaps = 25/404 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+++ LH +L+AL + GY+ PT +Q QAIP + G DL+ S+QTG+GKTAAF LPAL
Sbjct: 1 MSFENLNLHPAILRALTEAGYSTPTPIQAQAIPEVLEGHDLMASAQTGTGKTAAFTLPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ A+ H + R PR+LVLTPTRELA QV A +Y
Sbjct: 61 NLLATP--------------------HPAKSR----GPRILVLTPTRELAAQVNEAARKY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G +++ + +SI+GGMPY Q +LLS+ +IL+ATPGRL+DHM G+I+ S LQ+L+LDE
Sbjct: 97 GKFLRA-RTVSIVGGMPYPLQNKLLSQPIDILVATPGRLLDHMERGRIDMSRLQMLILDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF+ DIE+I A P RQT++FSAT +G + N+A+ + K P ++++ + ++K
Sbjct: 156 ADRMLDMGFMPDIERISSALPSERQTLMFSATFEGQIANIAKTLLKTPKVIQIAAQKEKH 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NI Q +LFVDD+ HKN+LL++LL V QA+VFT+TKR AD++A+ L +G +A LH
Sbjct: 216 ANIEQKLLFVDDMAHKNKLLEHLLIAPGVNQAIVFTSTKRHADLLAEDLYAAGHKSAALH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+ Q ARNRTL LR G +++LVATDVAARGIDV ITHV NYDLPKF EDYVHRIGRT
Sbjct: 276 GDMTQGARNRTLTKLRHGDVRVLVATDVAARGIDVQGITHVINYDLPKFAEDYVHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRAG G A+S +H +R ++KIE++T Q++ I VI G EPK+
Sbjct: 336 GRAGNTGVALSFASHMDRHQLRKIEQYTGQRLEISVIEGLEPKR 379
>gi|33599198|ref|NP_886758.1| ATP-dependent RNA helicase [Bordetella bronchiseptica RB50]
gi|412340496|ref|YP_006969251.1| ATP-dependent RNA helicase [Bordetella bronchiseptica 253]
gi|427812459|ref|ZP_18979523.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica
1289]
gi|33575244|emb|CAE30707.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica
RB50]
gi|408770330|emb|CCJ55122.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica 253]
gi|410563459|emb|CCN20993.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica
1289]
Length = 574
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 216/407 (53%), Positives = 283/407 (69%), Gaps = 24/407 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+ +GL +L AL + G+T+PT VQ AIP A++G DL+VSSQTGSGKTAAFMLPAL
Sbjct: 13 MSFEDLGLAPTILSALSEAGFTEPTSVQAAAIPQAMAGADLMVSSQTGSGKTAAFMLPAL 72
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
++ A +Q NK + +LVLTPTRELALQV AT Y
Sbjct: 73 NRIA-------------HQPGNKGVGVQ-----------VLVLTPTRELALQVADATASY 108
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G + ++ +++GGMPY Q++ LSR ++L+ATPGRLIDH+ +G++ + + LVLDE
Sbjct: 109 GRNLPGLRTATVVGGMPYGAQLKALSRRVDVLVATPGRLIDHLKAGRVKLNTVHTLVLDE 168
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DIE I++ P RQT+LFSATLDG V +AE + ++P +++ +K
Sbjct: 169 ADRMLDMGFIEDIETIIERLPKERQTLLFSATLDGSVARLAERMMREPQRIEIAGHRQKH 228
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NITQS+L+ DD HK RLLD++LRD R+ QA+VFTATKR AD +ADRL GF AA LH
Sbjct: 229 ANITQSLLYADDAAHKMRLLDHVLRDARLDQAIVFTATKRGADDLADRLADQGFAAAALH 288
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD++Q R RTL L+RG++++LVATDVAARGIDV I+H N+DLP EDYVHRIGRT
Sbjct: 289 GDMNQRQRTRTLGQLQRGQLRVLVATDVAARGIDVQGISHAVNFDLPLQAEDYVHRIGRT 348
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIR 407
GRAGR+G A +L HAER +++IE + Q I EVI G EP++ R
Sbjct: 349 GRAGRDGQAFTLATHAERHKVRRIEHYIGQSINAEVIAGLEPQRTPR 395
>gi|33593984|ref|NP_881628.1| ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
gi|384205287|ref|YP_005591026.1| putative ATP-dependent RNA helicase [Bordetella pertussis CS]
gi|408416947|ref|YP_006627654.1| ATP-dependent RNA helicase [Bordetella pertussis 18323]
gi|33564058|emb|CAE43326.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
gi|332383401|gb|AEE68248.1| putative ATP-dependent RNA helicase [Bordetella pertussis CS]
gi|401779117|emb|CCJ64602.1| putative ATP-dependent RNA helicase [Bordetella pertussis 18323]
Length = 574
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 216/407 (53%), Positives = 283/407 (69%), Gaps = 24/407 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+ +GL +L AL + G+T+PT VQ AIP A++G DL+VSSQTGSGKTAAFMLPAL
Sbjct: 13 MSFEDLGLAPTILSALSEAGFTEPTSVQAAAIPQAMAGADLMVSSQTGSGKTAAFMLPAL 72
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
++ A +Q NK + +LVLTPTRELALQV AT Y
Sbjct: 73 NRIA-------------HQPGNKGVGVQ-----------VLVLTPTRELALQVADATASY 108
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G + ++ +++GGMPY Q++ LSR ++L+ATPGRLIDH+ +G++ + + LVLDE
Sbjct: 109 GRNLPGLRTATVVGGMPYGAQLKALSRRVDVLVATPGRLIDHLKAGRVKLNTVHTLVLDE 168
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DIE I++ P RQT+LFSATLDG V +AE + ++P +++ +K
Sbjct: 169 ADRMLDMGFIEDIETIIERLPKERQTLLFSATLDGSVARLAERMMREPQRIEIAGHRQKH 228
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NITQS+L+ DD HK RLLD++LRD R+ QA+VFTATKR AD +ADRL GF AA LH
Sbjct: 229 ANITQSLLYADDAAHKMRLLDHVLRDARLDQAIVFTATKRGADDLADRLADQGFAAAALH 288
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD++Q R RTL L+RG++++LVATDVAARGIDV I+H N+DLP EDYVHRIGRT
Sbjct: 289 GDMNQRQRTRTLGQLQRGQLRVLVATDVAARGIDVQGISHAVNFDLPLQAEDYVHRIGRT 348
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIR 407
GRAGR+G A +L HAER +++IE + Q I EVI G EP++ R
Sbjct: 349 GRAGRDGQAFTLATHAERHKVRRIEHYIGQSINAEVIAGLEPQRTPR 395
>gi|410418009|ref|YP_006898458.1| ATP-dependent RNA helicase [Bordetella bronchiseptica MO149]
gi|408445304|emb|CCJ56953.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica
MO149]
Length = 574
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 216/407 (53%), Positives = 283/407 (69%), Gaps = 24/407 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+ +GL +L AL + G+T+PT VQ AIP A++G DL+VSSQTGSGKTAAFMLPAL
Sbjct: 13 MSFEDLGLAPTILSALSEAGFTEPTSVQAAAIPQAMAGADLMVSSQTGSGKTAAFMLPAL 72
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
++ A +Q NK + +LVLTPTRELALQV AT Y
Sbjct: 73 NRIA-------------HQPGNKGVGVQ-----------VLVLTPTRELALQVADATASY 108
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G + ++ +++GGMPY Q++ LSR ++L+ATPGRLIDH+ +G++ + + LVLDE
Sbjct: 109 GRNLPGLRTATVVGGMPYGAQLKALSRRVDVLVATPGRLIDHLKAGRVKLNTVHTLVLDE 168
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DIE I++ P RQT+LFSATLDG V +AE + ++P +++ +K
Sbjct: 169 ADRMLDMGFIEDIETIIERLPKERQTLLFSATLDGSVARLAERMMREPQRIEIAGHRQKH 228
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NITQS+L+ DD HK RLLD++LRD R+ QA+VFTATKR AD +ADRL GF AA LH
Sbjct: 229 ANITQSLLYADDAAHKMRLLDHVLRDARLDQAIVFTATKRGADDLADRLADQGFAAAALH 288
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD++Q R RTL L+RG++++LVATDVAARGIDV I+H N+DLP EDYVHRIGRT
Sbjct: 289 GDMNQRQRTRTLGQLQRGQLRVLVATDVAARGIDVQGISHAVNFDLPLQAEDYVHRIGRT 348
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIR 407
GRAGR+G A +L HAER +++IE + Q I EVI G EP++ R
Sbjct: 349 GRAGRDGQAFTLATHAERHKVRRIEHYIGQSINAEVIAGLEPQRTPR 395
>gi|427817501|ref|ZP_18984564.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica
D445]
gi|410568501|emb|CCN16541.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica
D445]
Length = 590
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 216/407 (53%), Positives = 283/407 (69%), Gaps = 24/407 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+ +GL +L AL + G+T+PT VQ AIP A++G DL+VSSQTGSGKTAAFMLPAL
Sbjct: 13 MSFEDLGLAPTILSALSEAGFTEPTSVQAAAIPQAMAGADLMVSSQTGSGKTAAFMLPAL 72
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
++ A +Q NK + +LVLTPTRELALQV AT Y
Sbjct: 73 NRIA-------------HQPGNKGVGVQ-----------VLVLTPTRELALQVADATASY 108
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G + ++ +++GGMPY Q++ LSR ++L+ATPGRLIDH+ +G++ + + LVLDE
Sbjct: 109 GRNLPGLRTATVVGGMPYGAQLKALSRRVDVLVATPGRLIDHLKAGRVKLNTVHTLVLDE 168
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DIE I++ P RQT+LFSATLDG V +AE + ++P +++ +K
Sbjct: 169 ADRMLDMGFIEDIETIIERLPKERQTLLFSATLDGSVARLAERMMREPQRIEIAGHRQKH 228
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NITQS+L+ DD HK RLLD++LRD R+ QA+VFTATKR AD +ADRL GF AA LH
Sbjct: 229 ANITQSLLYADDAAHKMRLLDHVLRDARLDQAIVFTATKRGADDLADRLADQGFAAAALH 288
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD++Q R RTL L+RG++++LVATDVAARGIDV I+H N+DLP EDYVHRIGRT
Sbjct: 289 GDMNQRQRTRTLGQLQRGQLRVLVATDVAARGIDVQGISHAVNFDLPLQAEDYVHRIGRT 348
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIR 407
GRAGR+G A +L HAER +++IE + Q I EVI G EP++ R
Sbjct: 349 GRAGRDGQAFTLATHAERHKVRRIEHYIGQSINAEVIAGLEPQRTPR 395
>gi|410471007|ref|YP_006894288.1| ATP-dependent RNA helicase [Bordetella parapertussis Bpp5]
gi|408441117|emb|CCJ47537.1| putative ATP-dependent RNA helicase [Bordetella parapertussis Bpp5]
Length = 542
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 215/407 (52%), Positives = 283/407 (69%), Gaps = 24/407 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+ +GL +L AL + G+T+PT VQ AIP A++G DL+VSSQTGSGKTAAFMLPAL
Sbjct: 13 MSFEDLGLAPTILSALSEAGFTEPTSVQAAAIPQAMAGADLMVSSQTGSGKTAAFMLPAL 72
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
++ A +Q NK + +LVLTPTRELALQV AT Y
Sbjct: 73 NRIA-------------HQPGNKGVGVQ-----------VLVLTPTRELALQVADATASY 108
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G + ++ +++GGMPY Q++ LSR ++L+ATPGRLIDH+ +G++ + + LVLDE
Sbjct: 109 GRNLPGLRTATVVGGMPYGAQLKALSRRVDVLVATPGRLIDHLKAGRVKLNTVHTLVLDE 168
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DIE I++ P RQT+LFSATLDG V +AE + ++P ++++ +K
Sbjct: 169 ADRMLDMGFIEDIETIIERLPKERQTLLFSATLDGSVARLAERMMREPQRIEISGHRQKH 228
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NITQS+L+ DD HK RLLD++LRD R+ QA+VFTATKR AD +ADRL GF AA LH
Sbjct: 229 ANITQSLLYADDAAHKMRLLDHVLRDARLDQAIVFTATKRGADDLADRLADQGFAAAALH 288
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD++Q R RTL L+RG++++LVATDVAARGIDV I+H N+DLP EDYVHRIGRT
Sbjct: 289 GDMNQRQRTRTLGQLQRGQLRVLVATDVAARGIDVQGISHAVNFDLPLQAEDYVHRIGRT 348
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIR 407
GRAGR+G A +L HAER +++IE + Q I EVI G E ++ R
Sbjct: 349 GRAGRDGQAFTLATHAERHKVRRIEHYIGQSINAEVIAGLESQRTPR 395
>gi|163859073|ref|YP_001633371.1| ATP-dependent RNA helicase [Bordetella petrii DSM 12804]
gi|163262801|emb|CAP45104.1| putative ATP-dependent RNA helicase [Bordetella petrii]
Length = 584
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/409 (52%), Positives = 282/409 (68%), Gaps = 24/409 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+++GL +L AL G++ PT VQ AIP A++G DL+VSSQTGSGKTAAFMLPAL
Sbjct: 1 MSFETLGLAPTLLSALQAAGFSAPTPVQAAAIPQALAGHDLMVSSQTGSGKTAAFMLPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
++ A Q NK + +LVLTPTRELALQVT AT Y
Sbjct: 61 NRIA-------------GQPGNKGVGVQ-----------VLVLTPTRELALQVTEATGSY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G + ++ +++GGMPY Q++ LSR ++L+ATPGRLIDH+ +G++ + + LVLDE
Sbjct: 97 GRNLPGLRTATVVGGMPYGAQLKALSRRVDVLVATPGRLIDHLKAGRVKLNTVHTLVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DIE I++ P RQT+LFSATLDG V +A + ++P +++ ++K
Sbjct: 157 ADRMLDMGFIEDIETIIERLPQERQTLLFSATLDGTVAKLAARMMREPQRIEMAGQKEKH 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NITQS+L+ DD HK +LLD++LRD ++ QA+VFTATKR AD +ADRL GF AA LH
Sbjct: 217 TNITQSLLYADDASHKMQLLDHVLRDAKLDQAIVFTATKRGADDLADRLADQGFAAAALH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD++Q R RTL L+RG+++ILVATDVAARGIDV I+H N+DLP EDYVHRIGRT
Sbjct: 277 GDMNQRQRTRTLTQLQRGQLRILVATDVAARGIDVQGISHAVNFDLPMQAEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTY 409
GRAGR+G A +L HAER +++IE + Q I E I G EPK+ R +
Sbjct: 337 GRAGRDGQAYTLATHAERHKVRRIEHYIGQSITPETIAGLEPKRTPRPF 385
>gi|148262453|ref|YP_001229159.1| DEAD/DEAH box helicase [Geobacter uraniireducens Rf4]
gi|146395953|gb|ABQ24586.1| DEAD/DEAH box helicase domain protein [Geobacter uraniireducens
Rf4]
Length = 453
Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust.
Identities = 208/425 (48%), Positives = 295/425 (69%), Gaps = 28/425 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+++ L +LKA+ GYT PT +QEQAIP A++G+DLI S+QTG+GKTAAF LPAL
Sbjct: 1 MSFETLQLSPSILKAIAVCGYTTPTPIQEQAIPLALAGKDLIASAQTGTGKTAAFTLPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ ++ P+ K PR+LVLTPTRELA QVT A Y
Sbjct: 61 QRLSTPS---PINGKG---------------------PRILVLTPTRELANQVTDAVRNY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G +M+ +++ +ILGGMPY Q+QLLS+ ++++ATPGRLIDH+ G+IN S L++L+LDE
Sbjct: 97 GKFMR-VRSGAILGGMPYREQLQLLSQPVDLIVATPGRLIDHLERGRINLSRLELLILDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF +D++KI A P RQT+LF+AT+D ++ +A+ + KDP+ +++ +
Sbjct: 156 ADRMLDMGFSDDVDKIAAAAPANRQTLLFTATMDDVMAKLAQRLLKDPVRIEIAGQKTSH 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
I Q + VD++ HKNR+L +L+ D + +A++F+ATKRDAD++A L+ G AA LH
Sbjct: 216 DQIEQRLHVVDNLQHKNRMLQHLIADGNLTKAIIFSATKRDADMLARELHAQGHAAAALH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+ QNARN+T+ N+RRG++++LVATDVAARG+DV I+HV N+DLPKF EDYVHRIGRT
Sbjct: 276 GDMTQNARNKTITNMRRGKVRLLVATDVAARGLDVTGISHVINFDLPKFAEDYVHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPK---KRIRTYYSRYRFNN 417
GRAG +G A+S V+ + + +IER+T Q +P+ VI G EP +R+ T R + N
Sbjct: 336 GRAGASGIAISFVSLNDINYLDRIERYTGQTLPLHVIPGLEPTRPLRRVSTSGKRSQPAN 395
Query: 418 NNWKT 422
KT
Sbjct: 396 GRGKT 400
>gi|302878957|ref|YP_003847521.1| DEAD/DEAH box helicase [Gallionella capsiferriformans ES-2]
gi|302581746|gb|ADL55757.1| DEAD/DEAH box helicase domain protein [Gallionella
capsiferriformans ES-2]
Length = 546
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 220/408 (53%), Positives = 293/408 (71%), Gaps = 25/408 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+ + L+ +LKA+ + GYT+PT +QEQAIP I+G DL+ S+QTGSGKTAAF+LPAL
Sbjct: 1 MTFEELNLNPSILKAIAETGYTEPTPIQEQAIPEIIAGHDLMASAQTGSGKTAAFILPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
++ A+ + +P PR+LVLTPTRELA QV A +Y
Sbjct: 61 NRLAT-PSAMPGKG-----------------------PRVLVLTPTRELAQQVCDAATKY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G M+ K ISILGGMPY Q +LLS + +IL+ATPGRLIDH+ G+I+FS L++L+LDE
Sbjct: 97 GKNMR-FKIISILGGMPYPVQNRLLSSHVDILVATPGRLIDHLERGRIDFSRLEMLILDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF++D+E+I ATP TRQT+LFSATL+G+VGN+A + K P + V++ + K
Sbjct: 156 ADRMLDMGFVDDVERIAAATPATRQTLLFSATLEGVVGNLASRLLKTPKRINVSAAKDKH 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+NI Q ++F DD+ HKN++L +LL D V QA+VFTATKRDAD +AD+L+ G A LH
Sbjct: 216 ENIEQRMMFADDVAHKNKMLSHLLTDTEVNQALVFTATKRDADGLADQLSAQGHSVAALH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+ Q RNRTL N+R G ++ILVATDVAARG+DV I+HV N+DLPKF EDYVHRIGRT
Sbjct: 276 GDMSQRERNRTLLNMRNGNVRILVATDVAARGLDVRGISHVINFDLPKFAEDYVHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
GR G +G A+S ++ + +K+IER+T+Q I + I G EPK ++RT
Sbjct: 336 GRGGSSGIAISFASNRDAQLLKRIERYTEQSIKMHTIEGLEPKYKLRT 383
>gi|187476686|ref|YP_784709.1| ATP-dependent RNA helicase [Bordetella avium 197N]
gi|115421272|emb|CAJ47777.1| putative ATP-dependent RNA helicase [Bordetella avium 197N]
Length = 592
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 214/418 (51%), Positives = 283/418 (67%), Gaps = 24/418 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL +L A+ G+++PT VQ AIP A++G DL+VSSQTGSGKTAAFMLPAL
Sbjct: 1 MSFADLGLSPTILSAIEATGFSEPTPVQAAAIPRAMAGADLMVSSQTGSGKTAAFMLPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
++ A Q+ NK + +LVLTPTRELALQV AT Y
Sbjct: 61 NRVA-------------GQSPNKGVGVQ-----------ILVLTPTRELALQVADATATY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G + ++ +++GG+PY Q++ LSR ++L+ATPGRLIDH+ +G++ + + LVLDE
Sbjct: 97 GANLPGLRTTTVVGGVPYGAQLKALSRRVDVLVATPGRLIDHLKAGRVKLNTVHTLVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DIE I++ P +RQT+LFSATLDG V +AE + ++P +++ K
Sbjct: 157 ADRMLDMGFIEDIETIIERLPQSRQTLLFSATLDGSVARLAEKMMREPERIEIAGHRDKH 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NITQS+L+ DD HK RLLD+LLRD R+ QA+VFTATKR AD +ADRL+ GF AA LH
Sbjct: 217 ANITQSLLYADDASHKMRLLDHLLRDTRLDQAIVFTATKRGADDLADRLSEQGFSAAALH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD++Q R RTL L+RG++++LVATDVAARGIDV I+H N+DLP EDYVHRIGRT
Sbjct: 277 GDMNQRQRTRTLTQLQRGQVRVLVATDVAARGIDVQGISHAVNFDLPLQAEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRYRFNNN 418
GRAGR+G A +L H+ER +++IE + Q I E I G EP++ R R N
Sbjct: 337 GRAGRDGLAYTLAVHSERHKVRRIEHYIGQTITPETIAGLEPQRSPRPSSGGPRGNGG 394
>gi|347540439|ref|YP_004847864.1| ATP-dependent RNA helicase [Pseudogulbenkiania sp. NH8B]
gi|345643617|dbj|BAK77450.1| ATP-dependent RNA helicase [Pseudogulbenkiania sp. NH8B]
Length = 438
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 211/405 (52%), Positives = 282/405 (69%), Gaps = 25/405 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL + AL GYT PT VQ +IPAA++G DL+VS+QTGSGKTAAF+LP+L
Sbjct: 1 MHFADLGLAPAITSALDAAGYTTPTPVQAASIPAALAGHDLLVSAQTGSGKTAAFLLPSL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
K ER PR+LVLTPTRELA QV Y
Sbjct: 61 QKLT------------------------ERSTGSGQGPRILVLTPTRELAQQVEKNATEY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ ++ + ++GG + Q++ ++R +I++ATPGRL+DHM SG+I+FS L++L+LDE
Sbjct: 97 GSQLRWLRTVCLVGGASFGYQIRAMARPVDIMVATPGRLMDHMRSGRIDFSRLEMLILDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DIE IV ATP +RQT+LFSATLDG VG +A+ +T+DP +++ + E+
Sbjct: 157 ADRMLDMGFIEDIETIVKATPDSRQTVLFSATLDGTVGKLAQKLTRDPQRIEI-AREETG 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NI + +L+ DD HK RLLD++L++ QAV+FTATK ++ +AD+L+ G+ AA LH
Sbjct: 216 GNIEEHLLYADDNRHKERLLDHILKEAGFDQAVIFTATKIGSEELADKLSDQGYAAACLH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+ QN RNRTL +LRRGR++ILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGRT
Sbjct: 276 GDMPQNWRNRTLNDLRRGRVRILVATDVAARGIDVPTITHVVNYDLPKQAEDYVHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
GRAGR+G A++L E +++IE++ K+QI VI G EP +R
Sbjct: 336 GRAGRDGVAITLAESKEFHKVRRIEQYLKRQITEGVIEGMEPTRR 380
>gi|224824946|ref|ZP_03698052.1| DEAD/DEAH box helicase domain protein [Pseudogulbenkiania
ferrooxidans 2002]
gi|224602617|gb|EEG08794.1| DEAD/DEAH box helicase domain protein [Pseudogulbenkiania
ferrooxidans 2002]
Length = 438
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 211/405 (52%), Positives = 282/405 (69%), Gaps = 25/405 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL + AL GYT PT VQ +IPAA++G DL+VS+QTGSGKTAAF+LP+L
Sbjct: 1 MHFADLGLAPAITSALDAAGYTTPTPVQAASIPAALAGHDLLVSAQTGSGKTAAFLLPSL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
K ER PR+LVLTPTRELA QV Y
Sbjct: 61 QKLT------------------------ERSTGSGQGPRILVLTPTRELAQQVEKNATEY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ ++ + ++GG + Q++ ++R +I++ATPGRL+DHM SG+I+FS L++L+LDE
Sbjct: 97 GSQLRWLRTVCLVGGASFGYQIRAMARPVDIMVATPGRLMDHMRSGRIDFSRLEMLILDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DIE IV ATP +RQT+LFSATLDG VG +A+ +T+DP +++ + E+
Sbjct: 157 ADRMLDMGFIEDIETIVKATPDSRQTVLFSATLDGTVGKLAQKLTRDPQRIEI-AREETG 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NI + +L+ DD HK RLLD++L++ QAV+FTATK ++ +AD+L+ G+ AA LH
Sbjct: 216 GNIEEHLLYADDNRHKERLLDHILKEAGFDQAVIFTATKIGSEELADKLSDQGYAAACLH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+ QN RNRTL +LRRGR++ILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGRT
Sbjct: 276 GDMPQNWRNRTLNDLRRGRVRILVATDVAARGIDVPTITHVVNYDLPKQAEDYVHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
GRAGR+G A++L E +++IE++ K+QI VI G EP +R
Sbjct: 336 GRAGRDGVAITLAESKEFHKVRRIEQYLKRQITEGVIEGMEPTRR 380
>gi|222054409|ref|YP_002536771.1| DEAD/DEAH box helicase [Geobacter daltonii FRC-32]
gi|221563698|gb|ACM19670.1| DEAD/DEAH box helicase domain protein [Geobacter daltonii FRC-32]
Length = 451
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 209/425 (49%), Positives = 291/425 (68%), Gaps = 28/425 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+S+ L L+LKA+ GYT PT +QEQAIP A+ G+DLI S+QTG+GKTAAF LPAL
Sbjct: 1 MSFESLQLSPLILKAIAACGYTTPTPIQEQAIPLALEGKDLIASAQTGTGKTAAFTLPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ S ++ IP PR+LVLTPTRELA QVT A Y
Sbjct: 61 ERL-SVRSPIPGRG-----------------------PRILVLTPTRELANQVTDAVRNY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G +++ + + +ILGGMPY Q+QLLSR ++++ATPGRLIDH++ G+IN S L++L+LDE
Sbjct: 97 GKFIR-VTSGAILGGMPYREQLQLLSRPVDLIVATPGRLIDHLDRGRINLSRLELLILDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF D+++I A P RQT+LF+AT+D ++ +A+ + KDP+ +++ +
Sbjct: 156 ADRMLDMGFSEDVDRIAAAAPANRQTLLFTATMDDVMAKLAQRLLKDPVRIEIAGKKMTH 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q + D++ HK R+L +L+ D V +A++F+ATKRDAD++A L+ G AA LH
Sbjct: 216 EQIEQRLHVADNLQHKTRMLQHLIADGTVTKAIIFSATKRDADLLARDLHAQGHAAAALH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+ QNARN+T+ N+RRG+I++LVATDVAARG+DV I+HV N+DLPKF EDYVHRIGRT
Sbjct: 276 GDMSQNARNKTIHNMRRGKIRLLVATDVAARGLDVTGISHVINFDLPKFAEDYVHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPK---KRIRTYYSRYRFNN 417
GRAG G A+S + + + +IER+T Q +P+ VI G EP +R+ T R + N
Sbjct: 336 GRAGATGIAISFASLNDLNYLDRIERYTGQTLPMHVIPGLEPTRPLRRLSTSGKRSQPGN 395
Query: 418 NNWKT 422
KT
Sbjct: 396 GRGKT 400
>gi|333375154|ref|ZP_08466978.1| ATP-dependent RNA helicase [Kingella kingae ATCC 23330]
gi|332971571|gb|EGK10521.1| ATP-dependent RNA helicase [Kingella kingae ATCC 23330]
Length = 481
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 211/405 (52%), Positives = 276/405 (68%), Gaps = 25/405 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L AL GY PT +Q QAIPAA+ RD++ S+QTGSGKTAAF+LP+L
Sbjct: 23 IKFSDLNLDKNILSALKSAGYDSPTPIQMQAIPAALDNRDIMASAQTGSGKTAAFLLPSL 82
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
K L Q + K PR+LVLTPTRELA QV + Y
Sbjct: 83 QK--------------LTQRSEK----------SGKSPRVLVLTPTRELAAQVEKNAQIY 118
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
MK +++++++GG + +Q++ LSR ++++ATPGRL+DHM SG+I+F L++LVLDE
Sbjct: 119 SQNMKWLRSVTLVGGSSFGQQIKALSRPIDVIVATPGRLMDHMRSGRIDFDRLEVLVLDE 178
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DIE IV ATP RQT+LFSAT DG VG +A +TK+P ++++ E KQ
Sbjct: 179 ADRMLDMGFIDDIETIVAATPEDRQTLLFSATWDGAVGKLARKLTKNPEVIEIER-EDKQ 237
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
I + +L+ DD HKNRLLD++LRD + Q V+FT+TK +++AD L GF A LH
Sbjct: 238 GKIEEQLLYCDDKNHKNRLLDHILRDANIDQCVIFTSTKAMTEVLADELYEKGFAANCLH 297
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGRT
Sbjct: 298 GDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRT 357
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
GRAGR+G A+S E M + KIER+ ++P VI G EP ++
Sbjct: 358 GRAGRSGIAISFAEVNEYMAVHKIERYINHKLPEVVIEGLEPTRK 402
>gi|74318833|ref|YP_316573.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
gi|74058328|gb|AAZ98768.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
Length = 533
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 208/408 (50%), Positives = 277/408 (67%), Gaps = 24/408 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL L+LK+++ GY T VQ+QAIPAA+SG DL+VSS TGSGKTAAF+LP++
Sbjct: 1 MSFSELGLDPLILKSVLAAGYENATPVQQQAIPAALSGGDLLVSSHTGSGKTAAFLLPSI 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + P +K PR+LVLTPTRELALQV A Y
Sbjct: 61 QRLLAE----PAVKS--------------------IGPRVLVLTPTRELALQVEKAAMTY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G M++ + ++GG PY Q++ LS+ ++++ATPGRLIDH+ GKI+FS L++LVLDE
Sbjct: 97 GKEMRRFRTACLVGGAPYGLQLKRLSQPVDVVVATPGRLIDHLERGKIDFSRLEVLVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF++DI+ I P RQT+LFSATLDG+VGN+A +T+D +++ ++ K+
Sbjct: 157 ADRMLDMGFVDDIKAIAARCPAERQTLLFSATLDGVVGNLARELTRDAQRIEIEAVPHKE 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
I Q +LF D++ HKNRLLD LLRD + QA+VF +TKR + I+D L SGF + LH
Sbjct: 217 AKIEQRLLFADNMDHKNRLLDALLRDVEMVQAIVFASTKRSTEEISDLLAESGFASDALH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+ Q RNR L+ LR GR ++LVATDVAARGIDV +I+HV N+DLP+ EDYVHRIGRT
Sbjct: 277 GDMQQGQRNRALQRLREGRTRVLVATDVAARGIDVASISHVINFDLPRQAEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
GRAGR G AVS E +K IER+T +I + + G EP +R T
Sbjct: 337 GRAGRTGIAVSFAGMREGGLVKNIERYTGNRIEVHTLPGLEPTQRPST 384
>gi|381400876|ref|ZP_09925795.1| ATP-dependent RNA helicase [Kingella kingae PYKK081]
gi|380834160|gb|EIC14009.1| ATP-dependent RNA helicase [Kingella kingae PYKK081]
Length = 461
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/405 (51%), Positives = 274/405 (67%), Gaps = 25/405 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L AL GY PT +Q QAIPAA+ RD++ S+QTGSGKTAAF+LP+L
Sbjct: 3 IKFSDLNLDKNILSALKSAGYDSPTPIQIQAIPAALDNRDIMASAQTGSGKTAAFLLPSL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
K K PR+LVLTPTRELA QV + Y
Sbjct: 63 QKLTQRSEK------------------------SGKGPRVLVLTPTRELAAQVEKNAQIY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
MK +++++++GG + +Q++ LSR ++++ATPGRL+DHM SG+I+F L++LVLDE
Sbjct: 99 SQNMKWLRSVTLVGGSSFGQQIKALSRPIDVIVATPGRLMDHMRSGRIDFDRLEVLVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DIE IV ATP RQT+LFSAT DG VG +A +TK+P ++++ E KQ
Sbjct: 159 ADRMLDMGFIDDIETIVAATPEDRQTLLFSATWDGAVGKLARKLTKNPEVIEIER-EDKQ 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
I + +L+ DD HKNRLLD++LRD + Q V+FT+TK +++AD L GF A LH
Sbjct: 218 GKIEEQLLYCDDKNHKNRLLDHILRDANINQCVIFTSTKAMTEVLADELYEKGFAANCLH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGRT
Sbjct: 278 GDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
GRAGR+G A+S E M + KIER+ +++P VI G EP ++
Sbjct: 338 GRAGRSGIAISFAEVNEYMAVHKIERYINRKLPEVVIEGLEPTRK 382
>gi|253698823|ref|YP_003020012.1| DEAD/DEAH box helicase [Geobacter sp. M21]
gi|251773673|gb|ACT16254.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M21]
Length = 449
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 205/407 (50%), Positives = 282/407 (69%), Gaps = 25/407 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+++ L +LKA+ GYT+PT +Q ++IP A+SGRDLI S+QTG+GKTA+F+LPAL
Sbjct: 1 MSFETLNLSAPILKAIQACGYTQPTPIQAESIPLALSGRDLIGSAQTGTGKTASFVLPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + P+ K PR+LVLTPTRELA+QV A Y
Sbjct: 61 ERLLTPS---PLRGKG---------------------PRILVLTPTRELAIQVVDAVRSY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G +M+ ++ SILGGMPY QM LL++ +I++ATPGRLIDH++ INFS L++LVLDE
Sbjct: 97 GKFMR-VRCGSILGGMPYRDQMMLLAQPVDIIVATPGRLIDHLDRRSINFSRLEMLVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF +D+++I DA P RQT+LF+AT+D + +A+ + KDP+ + V E
Sbjct: 156 ADRMLDMGFSDDVDRIADAAPAERQTLLFTATMDDAMAKLAQRLLKDPVRVAVEGTEVAN 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
I Q + DD+ HKNRLL +L+ D V +A++F+ATK+DAD +A L G AA LH
Sbjct: 216 LQIEQRLHVTDDMRHKNRLLQHLVSDASVTKAIIFSATKKDADQLAFELYSQGHAAAALH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+ Q ARN+T+ N+RRG++++LVATDVAARG+DV I+HV NYDLPKF EDYVHRIGRT
Sbjct: 276 GDMSQGARNKTITNMRRGKVRLLVATDVAARGLDVTGISHVINYDLPKFAEDYVHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIR 407
GRAG G A+S + E + +IERFT +++P+ V+ GFEP + +R
Sbjct: 336 GRAGATGIAISFCSMNEVAYLDRIERFTGKKLPMHVVEGFEPTRPLR 382
>gi|404379274|ref|ZP_10984339.1| hypothetical protein HMPREF9021_01703 [Simonsiella muelleri ATCC
29453]
gi|294482727|gb|EFG30416.1| hypothetical protein HMPREF9021_01703 [Simonsiella muelleri ATCC
29453]
Length = 455
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 209/406 (51%), Positives = 282/406 (69%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L AL GY PT +Q QAIPAA++ +D++ S+QTGSGKTAAF+LP+L
Sbjct: 3 IQFADLNLDKNILSALQSAGYHSPTPIQMQAIPAALADKDIMASAQTGSGKTAAFLLPSL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
K ++K++ KP + PR+LVLTPTRELA QV +
Sbjct: 63 QK---------IIKRS----------------EKPGKGPRVLVLTPTRELAAQVEKNAQI 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y MK ++ ++++GG + +Q+++LSR ++++ATPGRL+DHM SG+I+F L++L+LD
Sbjct: 98 YANNMKWVRTVTLVGGSSFGQQIKMLSRPIDVIVATPGRLMDHMRSGRIDFERLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV ATP RQT+LFSAT DG VG +A +TK+P I+++ E K
Sbjct: 158 EADRMLDMGFIDDIETIVAATPEDRQTLLFSATWDGAVGKLARKLTKNPEIIEIER-EDK 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD HKNRLLD++LRD + Q V+FT+TK +++AD L GF A L
Sbjct: 217 QGKIEEQLLYCDDKNHKNRLLDHILRDANIDQCVIFTSTKAMTEVLADELYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A+S E + + KIER+ ++++P VI G EP ++
Sbjct: 337 TGRAGRTGMAISFAEVNEYIAVHKIERYIERKLPEVVIEGLEPTRK 382
>gi|253996647|ref|YP_003048711.1| DEAD/DEAH box helicase [Methylotenera mobilis JLW8]
gi|253983326|gb|ACT48184.1| DEAD/DEAH box helicase domain protein [Methylotenera mobilis JLW8]
Length = 576
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 208/407 (51%), Positives = 283/407 (69%), Gaps = 25/407 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+S+ L+ +L+A+ + GYT PT +Q QAIP + G DL+ S+QTG+GKTA FMLPAL
Sbjct: 1 MSFESLNLNPAILRAIEETGYTTPTPIQAQAIPVVMEGHDLMASAQTGTGKTAGFMLPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ A+ H+ R R PR+LVLTPTRELA QV A +Y
Sbjct: 61 NLLAT--------------------PHESRSR----GPRILVLTPTRELAAQVNEAARKY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G +++ + +SI+GGMPY Q +LLS+ +IL+ATPGRL+DHM G+I+ S LQ+L+LDE
Sbjct: 97 GKFLR-ARTVSIVGGMPYPLQNKLLSQPLDILVATPGRLLDHMERGRIDLSRLQMLILDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF+ D+E+I + RQT+LFSATLDG + +A+ I K+P ++V + ++K
Sbjct: 156 ADRMLDMGFLPDVERICEQLSAERQTLLFSATLDGDIARIAQQILKNPKTVQVAAQKEKH 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NI Q + FVDD+ HKN+LL++LL V Q ++FT+TKR AD++A+ L +G A LH
Sbjct: 216 ANIEQRLHFVDDMTHKNKLLEHLLIAPEVNQTIIFTSTKRHADVLAEDLYAAGHKTAALH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+ Q ARNRTL LR G +K+LVATDVAARGIDV ITHV NYDLPKF EDYVHRIGRT
Sbjct: 276 GDMTQGARNRTLTKLRHGDVKVLVATDVAARGIDVHGITHVINYDLPKFAEDYVHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIR 407
GRA G A+S ++ +R ++KIE++T ++ VI GFEPK+ ++
Sbjct: 336 GRANNTGIAISFASNMDRHLLRKIEQYTGNRLEASVIEGFEPKRPVK 382
>gi|119896607|ref|YP_931820.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
gi|119669020|emb|CAL92933.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
Length = 447
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 210/405 (51%), Positives = 274/405 (67%), Gaps = 24/405 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F ++GL E ++ A+ + GYT PT VQEQAIPAAI+G DL+VSS TGSGKTAAF LP+L
Sbjct: 1 MTFHALGLAEELIAAVEQSGYTTPTPVQEQAIPAAIAGGDLLVSSHTGSGKTAAFTLPSL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ + P PR+LVLTPTRELA QV A + Y
Sbjct: 61 HRLVGRR---PAPNSG---------------------PRVLVLTPTRELAQQVEEAVKTY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ + ++GG P+ Q++ LSR ++++ATPGRL+DH+N K+ S ++ LVLDE
Sbjct: 97 GRALRWLNTACLVGGAPFFAQVKQLSRPVDVVVATPGRLLDHLNRRKLKLSDVETLVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF DIE IV A P +RQT+LFSATLDG+VG +A +T++P +++ S E K+
Sbjct: 157 ADRMLDMGFAEDIEAIVGAIPASRQTLLFSATLDGVVGALANKLTRNPQRIEIASTEAKR 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NI Q ++F DD+ HK+RLL+ LL + QAVVFTATK+ AD ++ L GF AA LH
Sbjct: 217 GNIEQRLMFADDMGHKSRLLEALLGTDGLQQAVVFTATKKSADELSLSLQEKGFSAAALH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+HQ RNRTL+ LR+GRI +LVATDVAARGIDV I+HV N+D P+ EDYVHRIGRT
Sbjct: 277 GDMHQTVRNRTLQRLRQGRIGVLVATDVAARGIDVAGISHVINFDPPRQVEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
GRAGR+G A++L E I+ IERFT ++ + I G EP R
Sbjct: 337 GRAGRDGIAITLSGPRETGLIRAIERFTGDRLAVHTIPGLEPAPR 381
>gi|197116587|ref|YP_002137014.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem]
gi|197085947|gb|ACH37218.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem]
Length = 453
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/407 (49%), Positives = 281/407 (69%), Gaps = 25/407 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+++ L +LKA+ GYT+PT +Q ++IP A+SGRDLI S+QTG+GKTA+F+LPAL
Sbjct: 1 MSFETLNLSAPILKAIQACGYTQPTPIQAESIPLALSGRDLIGSAQTGTGKTASFVLPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + P+ K PR+LVLTPTRELA+QV A Y
Sbjct: 61 ERLLTPS---PLRGKG---------------------PRILVLTPTRELAIQVVDAVRSY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G +M+ ++ SILGGMPY QM LL++ +I++ATPGRLIDH++ INFS L++LVLDE
Sbjct: 97 GKFMR-VRCGSILGGMPYRDQMMLLAQPVDIIVATPGRLIDHLDRRSINFSRLEMLVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF D+++I +A P RQT+LF+AT+D + +A+ + KDP+ + V E
Sbjct: 156 ADRMLDMGFSEDVDRIANAAPAERQTLLFTATMDDAMAKLAQRLLKDPVRVAVEGTEVAN 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
I Q + DD+ HKNRLL +L+ D V +A++F+ATK+DAD +A L G AA LH
Sbjct: 216 LQIEQRLHVTDDMRHKNRLLQHLVSDASVTKAIIFSATKKDADQLAFELYSQGHAAAALH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+ Q ARN+T+ +RRG++++LVATDVAARG+DV I+HV NYDLPKF EDYVHRIGRT
Sbjct: 276 GDMSQGARNKTITMMRRGKVRLLVATDVAARGLDVTGISHVINYDLPKFAEDYVHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIR 407
GRAG G A+S + E + + +IERFT +++P+ V+ GFEP + +R
Sbjct: 336 GRAGATGIAISFCSMNEVVYLDRIERFTGKKLPMHVVEGFEPTRPLR 382
>gi|238021260|ref|ZP_04601686.1| hypothetical protein GCWU000324_01158 [Kingella oralis ATCC 51147]
gi|237868240|gb|EEP69246.1| hypothetical protein GCWU000324_01158 [Kingella oralis ATCC 51147]
Length = 449
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 207/405 (51%), Positives = 277/405 (68%), Gaps = 25/405 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L AL GY +PT +Q Q+IPAA++ +D++ S+QTGSGKTAAF+LP+L
Sbjct: 3 IKFADLNLDKNILSALKSAGYEEPTPIQAQSIPAALANQDIMASAQTGSGKTAAFLLPSL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
K ++K++ PR+LVLTPTRELA QV + Y
Sbjct: 63 QK---------IIKRSEQPGKG---------------PRVLVLTPTRELAQQVEKNAQLY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
MK ++ ++++GG + +Q++ LSR +I++ATPGRL+DHM SG+I+F L++LVLDE
Sbjct: 99 AQNMKWVRTVTLVGGSSFGQQIKALSRPIDIVVATPGRLMDHMRSGRIDFDRLEVLVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DIE IV A P +RQT+LFSAT DG VG +A +TK+P ++++ E Q
Sbjct: 159 ADRMLDMGFIDDIETIVAAMPESRQTLLFSATWDGAVGKLARKLTKNPEVIEIERAEA-Q 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
I + +L+ DD HKNRLLD++LRD + Q V+FTATK + +AD L GF A LH
Sbjct: 218 GKIEEQLLYCDDRNHKNRLLDHILRDANIDQCVIFTATKAMTETLADELYEKGFAANCLH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+ Q RNRTL ++R+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGRT
Sbjct: 278 GDMPQGWRNRTLMDVRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
GRAGR G AVS + E M + KIER+ +++P VI G EP ++
Sbjct: 338 GRAGRTGIAVSFADAKEYMMVHKIERYINRKLPEIVIEGMEPTRK 382
>gi|325265712|ref|ZP_08132401.1| ATP-dependent RNA helicase RhlE [Kingella denitrificans ATCC 33394]
gi|324982843|gb|EGC18466.1| ATP-dependent RNA helicase RhlE [Kingella denitrificans ATCC 33394]
Length = 449
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 204/406 (50%), Positives = 277/406 (68%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L AL GY PT +Q Q+IPAA++ +D++ S+QTGSGKTAAF+LP+L
Sbjct: 3 IKFADLNLDKNILSALQAAGYDSPTPIQAQSIPAALADKDIMASAQTGSGKTAAFLLPSL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
K K P + PR+LVLTPTRELA QV +
Sbjct: 63 QKIVKRSEK-------------------------PGKGPRVLVLTPTRELAAQVEKNAQI 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y MK +++++++GG + +Q++ +S+ +I++ATPGRL+DHM SG+++F L++L+LD
Sbjct: 98 YAKNMKWVRSVTLVGGSSFGQQIKAMSKPIDIIVATPGRLMDHMRSGRVDFDRLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV ATP RQT+LFSAT DG VG +A +TK+P ++++ E K
Sbjct: 158 EADRMLDMGFIDDIETIVAATPEDRQTLLFSATWDGAVGKLARKLTKNPEVIEIER-EDK 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD HKNRLLD++LRD + Q V+FT+TK +++AD L GF A L
Sbjct: 217 QGKIDEQLLYCDDKNHKNRLLDHILRDANIDQCVIFTSTKAMTEVLADELYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR+G A+S E M + KIER+ +++P +I G EP ++
Sbjct: 337 TGRAGRSGLAISFAEVNEYMAVHKIERYIGRKLPEVLIEGLEPTRK 382
>gi|350551951|ref|ZP_08921160.1| DEAD/DEAH box helicase domain protein [Thiorhodospira sibirica ATCC
700588]
gi|349795594|gb|EGZ49390.1| DEAD/DEAH box helicase domain protein [Thiorhodospira sibirica ATCC
700588]
Length = 445
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 210/407 (51%), Positives = 269/407 (66%), Gaps = 26/407 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+S+GL +L A+ GYT PT VQ QAIPAA++G DL+VSS TGSGKTAAF LP L
Sbjct: 1 MSFESLGLENALLSAIEATGYTTPTPVQIQAIPAALTGADLLVSSHTGSGKTAAFTLPCL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
+ R +P PR+LVLTPTRELA QV A +
Sbjct: 61 QRLIEQ-------------------------RAQPGSGPRVLVLTPTRELAQQVEKAVKT 95
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
YG ++ + ++GG P++ Q + LSR ++++ATPGRLIDH+N K+ S +Q+L+LD
Sbjct: 96 YGRKLRWLNTACLVGGAPFIAQAKQLSRPVDVVVATPGRLIDHLNRRKLKLSDVQMLILD 155
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGF DIE IV ATP RQT+LFSATLDG+VGN+A +T D +++ +++
Sbjct: 156 EADRMLDMGFAEDIETIVAATPQDRQTLLFSATLDGVVGNLARKLTTDAQRIEIAPAQER 215
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
NI Q +L D++ HK RLL+ LL + QAVVFTATKR AD ++ L GF A L
Sbjct: 216 SGNIEQRLLLADNLTHKTRLLESLLESDDLQQAVVFTATKRSADELSISLREKGFAADAL 275
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q ARNRTL+ LR GRI ILVATDVAARGIDV I+HV N+D P+ EDYVHRIGR
Sbjct: 276 HGDMQQRARNRTLDKLRNGRISILVATDVAARGIDVAGISHVINFDPPRCAEDYVHRIGR 335
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
TGRAGR+G A++L E I+ IER+T + I + VI G EP R+
Sbjct: 336 TGRAGRDGIAITLSGPREIGVIRAIERYTGKSIEVHVIEGLEPVSRV 382
>gi|304310488|ref|YP_003810086.1| ATP-dependent RNA helicase [gamma proteobacterium HdN1]
gi|301796221|emb|CBL44429.1| ATP-dependent RNA helicase [gamma proteobacterium HdN1]
Length = 527
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 208/405 (51%), Positives = 265/405 (65%), Gaps = 24/405 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
MNF +GL+ ++ L +GY + T VQ+ AIPAA+ G DL+ SS TGSGKTAAF+LP L
Sbjct: 1 MNFSDLGLNTRLVSTLQALGYEQATPVQQLAIPAALQGGDLLASSHTGSGKTAAFLLPCL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ K RMLVLTPTRELALQ+ A Y
Sbjct: 61 QRMIDDPKP------------------------KSGAARMLVLTPTRELALQIEKAARNY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++++ ++GG Y Q++ L R PEIL+ATPGRL+DH+ G+++ S ++ LVLDE
Sbjct: 97 GREVRRLNTACLVGGSSYFMQLKDLGRQPEILIATPGRLLDHIERGRVDLSQIETLVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF +DIE IV T RQTMLFSAT++G+VG +A +T+DP +++ ++Q
Sbjct: 157 ADRMLDMGFSDDIEAIVAETNPERQTMLFSATMEGVVGALARKLTRDPQRIEIEKKPEQQ 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
I Q ++ DD+ HKNRLL LLRD+ + QAVVFTATKR A+ +++ L GF LH
Sbjct: 217 AKIEQKLMMADDLAHKNRLLGALLRDESLNQAVVFTATKRAAEDLSNTLRDEGFSVEALH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+HQ RNRTL LR+GRI ILVATDVAARGIDV I+HV NYD P+ EDYVHRIGRT
Sbjct: 277 GDMHQKLRNRTLTKLRQGRIGILVATDVAARGIDVVGISHVINYDPPRQVEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
GRAGR G AV+L ER I+ IERFT Q I + VI G EP +R
Sbjct: 337 GRAGRTGTAVTLAEFKERRIIRDIERFTGQPIEVTVIPGMEPTRR 381
>gi|385340268|ref|YP_005894140.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
G2136]
gi|416203761|ref|ZP_11620112.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
961-5945]
gi|433467509|ref|ZP_20424963.1| helicase domain protein [Neisseria meningitidis 87255]
gi|325142563|gb|EGC64962.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
961-5945]
gi|325198512|gb|ADY93968.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
G2136]
gi|432202343|gb|ELK58407.1| helicase domain protein [Neisseria meningitidis 87255]
Length = 462
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 205/406 (50%), Positives = 269/406 (66%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP+A+ GRD++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPSALEGRDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
K K P + PR LVLTPTRELA QV
Sbjct: 63 QKLTKRSEK-------------------------PGKGPRALVLTPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL+D M SGK++F L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFERLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TKDP I++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPTDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDD- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A++ E + + KIE++ +++P I G EP ++
Sbjct: 337 TGRAGRTGIAITFAEVNEYVKVHKIEKYINRKLPELTIEGMEPTRK 382
>gi|217968880|ref|YP_002354114.1| DEAD/DEAH box helicase [Thauera sp. MZ1T]
gi|217506207|gb|ACK53218.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T]
Length = 441
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 209/405 (51%), Positives = 274/405 (67%), Gaps = 24/405 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
MNF+++GL E +LKA+ GYT PT VQ++AIPAAI+GRDL+VSS TGSGKTAAF LPAL
Sbjct: 1 MNFENLGLAEELLKAVASTGYTTPTPVQQRAIPAAIAGRDLLVSSHTGSGKTAAFTLPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
N+I +R + PR+LVLTPTRELA QV A + Y
Sbjct: 61 ---------------------NRII---DRRPAPGSGPRVLVLTPTRELAQQVEKAVQTY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ + ++GG P Q++ L R ++++ATPGRL+DH+ KI S +++L+LDE
Sbjct: 97 GKALRWLNTACLVGGAPMFAQIKQLQRQCDVVVATPGRLLDHLTRRKIKLSDVEVLILDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF DI+ IV ATP RQT+LFSATLDG+VG+MA +T+D +++ ++ +
Sbjct: 157 ADRMLDMGFAEDIDAIVAATPAKRQTLLFSATLDGVVGSMATRMTRDAERIEIEVAQEDR 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
I Q ++F DD+ HK+RLL LL + + QAVVFTATKR AD ++ L G AA LH
Sbjct: 217 GQIEQRLMFADDLGHKSRLLHALLGEDGMNQAVVFTATKRSADELSLALQEKGISAAALH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+HQ RNRTL+ LR+GRI +LVATDVAARGIDV I+HV N+D P+ EDYVHRIGRT
Sbjct: 277 GDMHQTQRNRTLDRLRQGRIGVLVATDVAARGIDVAGISHVINFDPPRQAEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
GRAGR+G A++L E I+ IERFT ++ + I G EP R
Sbjct: 337 GRAGRDGIAITLSGPRETGLIRAIERFTGDRLAVHTIPGMEPSPR 381
>gi|304387310|ref|ZP_07369503.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis ATCC 13091]
gi|304338693|gb|EFM04810.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis ATCC 13091]
Length = 462
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 205/406 (50%), Positives = 269/406 (66%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP+A+ GRD++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPSALEGRDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
K K P + PR LVLTPTRELA QV
Sbjct: 63 QKLTKRSEK-------------------------PGKGPRALVLTPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL+D M SGK++F L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFERLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TKDP I++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPSDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDD- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A++ E + + KIE++ +++P I G EP ++
Sbjct: 337 TGRAGRTGIAITFAEVNEYVKVHKIEKYINRKLPELTIEGMEPTRK 382
>gi|421544660|ref|ZP_15990736.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM140]
gi|421546775|ref|ZP_15992820.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM183]
gi|421549027|ref|ZP_15995051.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM2781]
gi|421552978|ref|ZP_15998950.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM576]
gi|421557466|ref|ZP_16003371.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 80179]
gi|421561448|ref|ZP_16007295.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM2657]
gi|421567716|ref|ZP_16013450.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM3001]
gi|402323020|gb|EJU58470.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM183]
gi|402323851|gb|EJU59293.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM140]
gi|402325706|gb|EJU61115.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM2781]
gi|402330157|gb|EJU65506.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM576]
gi|402335104|gb|EJU70379.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 80179]
gi|402338379|gb|EJU73614.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM2657]
gi|402343749|gb|EJU78895.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM3001]
Length = 462
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 205/406 (50%), Positives = 269/406 (66%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP+A+ GRD++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPSALEGRDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
K K P + PR LVLTPTRELA QV
Sbjct: 63 QKLTKRSEK-------------------------PGKGPRALVLTPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL+D M SGK++F L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFERLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TKDP I++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPSDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDD- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDADIDQCVIFTSTKAMTEVIADELYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A++ E + + KIE++ +++P I G EP ++
Sbjct: 337 TGRAGRTGIAITFAEVNEYVKVHKIEKYIGRKLPELTIEGMEPTRK 382
>gi|329119861|ref|ZP_08248535.1| ATP-dependent RNA helicase RhlE [Neisseria bacilliformis ATCC
BAA-1200]
gi|327464017|gb|EGF10328.1| ATP-dependent RNA helicase RhlE [Neisseria bacilliformis ATCC
BAA-1200]
Length = 444
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/406 (50%), Positives = 272/406 (66%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L ALV GY PT +Q QA+P A+ GRD++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFSDLNLDKNILSALVSAGYETPTPIQAQAVPFALEGRDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
+ R KP + PR LVLTPTRELA QV
Sbjct: 63 QRLT-------------------------RRSEKPGKGPRALVLTPTRELAAQVEKNALT 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y MK + +SI+GG + Q + LS+ ++++ATPGRL+D M+SGK++F+ L++L+LD
Sbjct: 98 YAKNMKWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMDSGKVDFARLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI DIE IV ATP RQT+LFSAT DG VG +A +TK+P ++++ +++
Sbjct: 158 EADRMLDMGFIEDIETIVAATPEDRQTLLFSATWDGAVGKLARKLTKNPEVVEIERVDE- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR+G AV+ E + + KIE++ +++P + G EP ++
Sbjct: 337 TGRAGRSGIAVTFAEVNEYVKVHKIEKYIGRKLPELTVEGMEPTRK 382
>gi|313668514|ref|YP_004048798.1| ATP-dependent RNA helicase [Neisseria lactamica 020-06]
gi|313005976|emb|CBN87433.1| putative ATP-dependent RNA helicase [Neisseria lactamica 020-06]
Length = 462
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/406 (50%), Positives = 270/406 (66%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP+A+ GRD++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPSALDGRDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
+ K P + PR LVLTPTRELA QV
Sbjct: 63 QRLTKRSEK-------------------------PGKGPRALVLTPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL+D M SGK++F+ L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFARLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TKDP +++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPSDRQTLLFSATWDGAVGKLARKLTKDPEVIEVERVDD- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A++ E + + KIE++ +++P I G EP ++
Sbjct: 337 TGRAGRTGIAITFAEVNEYVKVHKIEKYINRKLPELTIEGMEPTRK 382
>gi|422110316|ref|ZP_16380378.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309378859|emb|CBX22564.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 462
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/406 (50%), Positives = 270/406 (66%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP+A+ GRD++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPSALDGRDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
+ K P + PR LVLTPTRELA QV
Sbjct: 63 QRLTKRSEK-------------------------PGKGPRALVLTPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL+D M SGK++F+ L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMRSGKVDFARLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TKDP +++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPSDRQTLLFSATWDGAVGKLARKLTKDPEVIEVERVDD- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A++ E + + KIE++ +++P I G EP ++
Sbjct: 337 TGRAGRTGIAITFAEVNEYVKVHKIEKYINRKLPELTIEGMEPTRK 382
>gi|261400326|ref|ZP_05986451.1| putative ATP-dependent RNA helicase RhlE [Neisseria lactamica ATCC
23970]
gi|269209952|gb|EEZ76407.1| putative ATP-dependent RNA helicase RhlE [Neisseria lactamica ATCC
23970]
Length = 462
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/406 (50%), Positives = 270/406 (66%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP+A+ GRD++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPSALDGRDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
+ K P + PR LVLTPTRELA QV
Sbjct: 63 QRLTKRSEK-------------------------PGKGPRALVLTPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL+D M SGK++F+ L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFARLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TKDP +++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPSDRQTLLFSATWDGAVGKLARKLTKDPEVIEVERVDD- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDADIDQCVIFTSTKAMTEVIADELYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A++ E + + KIE++ +++P I G EP ++
Sbjct: 337 TGRAGRTGIAITFAEVNEYVKVHKIEKYIGRKLPELTIEGMEPTRK 382
>gi|15677233|ref|NP_274386.1| ATP-dependent RNA helicase [Neisseria meningitidis MC58]
gi|385328633|ref|YP_005882936.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
alpha710]
gi|385341717|ref|YP_005895588.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M01-240149]
gi|385853007|ref|YP_005899521.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
H44/76]
gi|385857437|ref|YP_005903949.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
NZ-05/33]
gi|416170381|ref|ZP_11608309.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
OX99.30304]
gi|416187461|ref|ZP_11614222.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M0579]
gi|416196318|ref|ZP_11618088.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
CU385]
gi|427828052|ref|ZP_18995071.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
H44/76]
gi|433465310|ref|ZP_20422792.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM422]
gi|433490690|ref|ZP_20447816.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM418]
gi|433505072|ref|ZP_20462011.1| helicase domain protein [Neisseria meningitidis 9506]
gi|433507373|ref|ZP_20464281.1| helicase domain protein [Neisseria meningitidis 9757]
gi|433509576|ref|ZP_20466445.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 12888]
gi|433511579|ref|ZP_20468406.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 4119]
gi|7226614|gb|AAF41742.1| putative ATP-dependent RNA helicase [Neisseria meningitidis MC58]
gi|308389485|gb|ADO31805.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
alpha710]
gi|316984178|gb|EFV63156.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
H44/76]
gi|325130443|gb|EGC53205.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
OX99.30304]
gi|325136474|gb|EGC59080.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M0579]
gi|325140412|gb|EGC62933.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
CU385]
gi|325200011|gb|ADY95466.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
H44/76]
gi|325201923|gb|ADY97377.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M01-240149]
gi|325208326|gb|ADZ03778.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
NZ-05/33]
gi|389605504|emb|CCA44421.1| DEAD-box ATP-dependent RNA helicase 42 [Neisseria meningitidis
alpha522]
gi|432203254|gb|ELK59308.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM422]
gi|432227681|gb|ELK83390.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM418]
gi|432241197|gb|ELK96727.1| helicase domain protein [Neisseria meningitidis 9506]
gi|432241738|gb|ELK97267.1| helicase domain protein [Neisseria meningitidis 9757]
gi|432246964|gb|ELL02410.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 12888]
gi|432247627|gb|ELL03064.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 4119]
Length = 462
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 205/406 (50%), Positives = 268/406 (66%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP A+ GRD++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
K K P + PR LVLTPTRELA QV
Sbjct: 63 QKLTKRSEK-------------------------PGKGPRALVLTPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL+D M SGK++F L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFERLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TKDP I++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPSDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDD- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A++ E + + KIE++ +++P I G EP ++
Sbjct: 337 TGRAGRTGIAITFAEVNEYVKVHKIEKYINRKLPELTIEGMEPTRK 382
>gi|418288548|ref|ZP_12901023.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
NM233]
gi|418290793|ref|ZP_12902906.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
NM220]
gi|372201002|gb|EHP14985.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
NM220]
gi|372201680|gb|EHP15573.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
NM233]
Length = 462
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 205/406 (50%), Positives = 268/406 (66%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP A+ GRD++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
K K P + PR LVLTPTRELA QV
Sbjct: 63 QKLTKRSEK-------------------------PGKGPRALVLTPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL+D M SGK++F L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFERLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TKDP I++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPSDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDD- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A++ E + + KIE++ +++P I G EP ++
Sbjct: 337 TGRAGRTGIAITFAEVNEYVKVHKIEKYINRKLPELTIEGMEPTRK 382
>gi|297538310|ref|YP_003674079.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera
versatilis 301]
gi|297257657|gb|ADI29502.1| DEAD/DEAH box helicase domain protein [Methylotenera versatilis
301]
Length = 630
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/407 (49%), Positives = 280/407 (68%), Gaps = 25/407 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
++F+S+ L +L+A+ + GYT PT +Q QAIP +G DL+ S+QTG+GKTAAFMLPAL
Sbjct: 23 LSFESLNLDNALLRAIEESGYTTPTAIQSQAIPVVTAGHDLMASAQTGTGKTAAFMLPAL 82
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ A+ K PR+LVL PTRELA QV A +Y
Sbjct: 83 NLLATPHE------------------------LKSRGPRILVLVPTRELATQVNEAARKY 118
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G +++ + +SI+GGMPY Q +LLS+ +IL+ATPGRL+DHM G+I+ S LQ+L+LDE
Sbjct: 119 GKFIR-ARTVSIVGGMPYPLQNKLLSQPLDILVATPGRLLDHMERGRIDLSRLQMLILDE 177
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF+ D+E+I + RQT+LFSATLDG + +A+ I K+P ++V ++K
Sbjct: 178 ADRMLDMGFLPDVERICEQLSAERQTLLFSATLDGDIARVAKQILKNPKTIQVAGQKEKH 237
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NI Q + +VDD+ HKN+LL++LL V Q ++FT+TKR D++A+ L +G A LH
Sbjct: 238 ANIEQRLHYVDDMTHKNKLLEHLLIAPEVNQVIIFTSTKRHCDVLAEDLYAAGHKTAALH 297
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+ Q ARNRTL LR+G +K+LVATDVAARGID+ I+HV NYDLPKF EDYVHRIGRT
Sbjct: 298 GDMTQGARNRTLTKLRQGDVKVLVATDVAARGIDINGISHVINYDLPKFAEDYVHRIGRT 357
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIR 407
GRAG+ G A+S ++ +R ++KIE+FT ++ V+ GFEPK+ ++
Sbjct: 358 GRAGKTGIAISFASNMDRHILRKIEQFTGNRMEPGVVEGFEPKRAMK 404
>gi|261377495|ref|ZP_05982068.1| putative ATP-dependent RNA helicase RhlE [Neisseria cinerea ATCC
14685]
gi|269146228|gb|EEZ72646.1| putative ATP-dependent RNA helicase RhlE [Neisseria cinerea ATCC
14685]
Length = 473
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/406 (50%), Positives = 269/406 (66%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP A+ GRD++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
+ K P + PR LVLTPTRELA QV
Sbjct: 63 QRLTKRSEK-------------------------PGKGPRALVLTPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL+D M SGK++F+ L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFTRLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TKDP +++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPADRQTLLFSATWDGAVGKLARKLTKDPEVIEVERVDD- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A++ E + + KIE++ +++P I G EP ++
Sbjct: 337 TGRAGRTGIAITFAEVNEYVKVHKIEKYIGRKLPELTIEGMEPTRK 382
>gi|421538315|ref|ZP_15984492.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 93003]
gi|402317134|gb|EJU52673.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 93003]
Length = 462
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/406 (50%), Positives = 268/406 (66%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP A+ GRD++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
+ K P + PR LVLTPTRELA QV
Sbjct: 63 QRLTKRSEK-------------------------PGKGPRALVLTPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL+D M SGK++F L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFERLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TKDP I++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPSDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDD- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A++ E + + KIE++ +++P I G EP ++
Sbjct: 337 TGRAGRTGIAITFAEVNEYVKVHKIEKYINRKLPELTIEGMEPTRK 382
>gi|254805163|ref|YP_003083384.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
alpha14]
gi|254668705|emb|CBA06474.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
alpha14]
Length = 462
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/406 (50%), Positives = 268/406 (66%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP A+ GRD++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
+ K P + PR LVLTPTRELA QV
Sbjct: 63 QRLTKRSEK-------------------------PGKGPRALVLTPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL+D M SGK++F L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFGRLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TKDP I++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPTDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDD- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A++ E + + KIE++ +++P I G EP ++
Sbjct: 337 TGRAGRTGIAITFAEVNEYVKVHKIEKYINRKLPELTIEGMEPTRK 382
>gi|421563568|ref|ZP_16009387.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM2795]
gi|421907098|ref|ZP_16336986.1| DEAD-box ATP-dependent RNA helicase 42 [Neisseria meningitidis
alpha704]
gi|393292062|emb|CCI72959.1| DEAD-box ATP-dependent RNA helicase 42 [Neisseria meningitidis
alpha704]
gi|402341264|gb|EJU76451.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM2795]
Length = 457
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/406 (50%), Positives = 269/406 (66%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP A+ GRD++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
+ K P + PR LVLTPTRELA QV
Sbjct: 63 QRLTKRSEK-------------------------PGKGPRALVLTPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL+D M SGK++F+ L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFARLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TKDP I++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPSDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDD- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A++ E + + KIE++ +++P I G EP ++
Sbjct: 337 TGRAGRTGIAITFAEVNEYVKVHKIEKYINRKLPELTIEGMEPTRK 382
>gi|218768385|ref|YP_002342897.1| ATP-dependent RNA helicase [Neisseria meningitidis Z2491]
gi|385338217|ref|YP_005892090.1| putative ATP-dependent RNA helicase [Neisseria meningitidis WUE
2594]
gi|421550861|ref|ZP_15996862.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 69166]
gi|433471424|ref|ZP_20428810.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 68094]
gi|433475102|ref|ZP_20432443.1| helicase domain protein [Neisseria meningitidis 88050]
gi|433477812|ref|ZP_20435132.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 70012]
gi|433479923|ref|ZP_20437213.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 63041]
gi|433513686|ref|ZP_20470476.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 63049]
gi|433515857|ref|ZP_20472625.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2004090]
gi|433517759|ref|ZP_20474505.1| helicase domain protein [Neisseria meningitidis 96023]
gi|433520141|ref|ZP_20476861.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 65014]
gi|433522082|ref|ZP_20478772.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 61103]
gi|433524325|ref|ZP_20480986.1| helicase domain protein [Neisseria meningitidis 97020]
gi|433526427|ref|ZP_20483057.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 69096]
gi|433528435|ref|ZP_20485044.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM3652]
gi|433530636|ref|ZP_20487225.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM3642]
gi|433532905|ref|ZP_20489468.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2007056]
gi|433534653|ref|ZP_20491193.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2001212]
gi|433539146|ref|ZP_20495622.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 70030]
gi|433541219|ref|ZP_20497671.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 63006]
gi|121052393|emb|CAM08725.1| putative ATP-dependent RNA helicase [Neisseria meningitidis Z2491]
gi|319410631|emb|CBY91000.1| putative ATP-dependent RNA helicase [Neisseria meningitidis WUE
2594]
gi|402329398|gb|EJU64759.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 69166]
gi|432208276|gb|ELK64254.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 68094]
gi|432210920|gb|ELK66875.1| helicase domain protein [Neisseria meningitidis 88050]
gi|432215477|gb|ELK71366.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 70012]
gi|432216262|gb|ELK72144.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 63041]
gi|432247218|gb|ELL02657.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 63049]
gi|432252783|gb|ELL08133.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2004090]
gi|432253495|gb|ELL08839.1| helicase domain protein [Neisseria meningitidis 96023]
gi|432254863|gb|ELL10197.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 65014]
gi|432259153|gb|ELL14427.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 61103]
gi|432259569|gb|ELL14840.1| helicase domain protein [Neisseria meningitidis 97020]
gi|432261191|gb|ELL16448.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 69096]
gi|432265236|gb|ELL20432.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM3652]
gi|432266728|gb|ELL21910.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2007056]
gi|432267143|gb|ELL22324.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM3642]
gi|432271395|gb|ELL26520.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2001212]
gi|432273508|gb|ELL28606.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 70030]
gi|432277232|gb|ELL32281.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 63006]
Length = 462
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/406 (50%), Positives = 269/406 (66%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP A+ GRD++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
+ K P + PR LVLTPTRELA QV
Sbjct: 63 QRLTKRSEK-------------------------PGKGPRALVLTPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL+D M SGK++F+ L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFARLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TKDP I++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPEDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDD- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDADIDQCVIFTSTKAMTEVIADELYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A++ E + + KIE++ +++P I G EP ++
Sbjct: 337 TGRAGRTGIAITFAEVNEYVKVHKIEKYINRKLPELTIEGMEPTRK 382
>gi|421554967|ref|ZP_16000906.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 98008]
gi|402332120|gb|EJU67451.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 98008]
Length = 462
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/406 (50%), Positives = 269/406 (66%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP A+ GRD++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
+ K P + PR LVLTPTRELA QV
Sbjct: 63 QRLTKRSEK-------------------------PGKGPRALVLTPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL+D M SGK++F+ L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFARLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TKDP I++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPEDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDD- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A++ E + + KIE++ +++P I G EP ++
Sbjct: 337 TGRAGRTGIAITFAEVNEYVKVHKIEKYINRKLPELTIEGMEPTRK 382
>gi|161870238|ref|YP_001599408.1| ATP-dependent RNA helicase [Neisseria meningitidis 053442]
gi|161595791|gb|ABX73451.1| ATP-dependent RNA helicase, putative [Neisseria meningitidis
053442]
Length = 462
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/406 (50%), Positives = 268/406 (66%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP A+ GRD++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
K K P + PR LVLTPTRELA QV
Sbjct: 63 QKLTKRSEK-------------------------PGKGPRALVLTPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL+D M SGK++F L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFERLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TKDP +++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPSDRQTLLFSATWDGAVGKLARKLTKDPEVIEVERVDD- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A++ E + + KIE++ +++P I G EP ++
Sbjct: 337 TGRAGRTGIAITFAEVNEYVKVHKIEKYINRKLPELTIEGMEPTRK 382
>gi|121635074|ref|YP_975319.1| ATP-dependent RNA helicase [Neisseria meningitidis FAM18]
gi|385851042|ref|YP_005897557.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M04-240196]
gi|416177869|ref|ZP_11610238.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M6190]
gi|416182746|ref|ZP_11612182.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M13399]
gi|416191897|ref|ZP_11616278.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
ES14902]
gi|416213139|ref|ZP_11622123.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M01-240013]
gi|433469561|ref|ZP_20426982.1| helicase domain protein [Neisseria meningitidis 98080]
gi|433492761|ref|ZP_20449854.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM586]
gi|433494895|ref|ZP_20451963.1| putative ATP-dependent RNA helicase [Neisseria meningitidis NM762]
gi|433497061|ref|ZP_20454099.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis M7089]
gi|433499123|ref|ZP_20456132.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis M7124]
gi|433501099|ref|ZP_20458085.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM174]
gi|433503205|ref|ZP_20460166.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM126]
gi|120866780|emb|CAM10533.1| putative ATP-dependent RNA helicase [Neisseria meningitidis FAM18]
gi|325132439|gb|EGC55132.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M6190]
gi|325134396|gb|EGC57041.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M13399]
gi|325138213|gb|EGC60782.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
ES14902]
gi|325144497|gb|EGC66796.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M01-240013]
gi|325205865|gb|ADZ01318.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M04-240196]
gi|432203831|gb|ELK59881.1| helicase domain protein [Neisseria meningitidis 98080]
gi|432228547|gb|ELK84247.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM586]
gi|432230098|gb|ELK85777.1| putative ATP-dependent RNA helicase [Neisseria meningitidis NM762]
gi|432233554|gb|ELK89181.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis M7089]
gi|432234957|gb|ELK90577.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis M7124]
gi|432236390|gb|ELK91999.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM174]
gi|432239970|gb|ELK95514.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM126]
Length = 462
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/406 (50%), Positives = 268/406 (66%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP A+ GRD++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
+ K P + PR LVLTPTRELA QV
Sbjct: 63 QRLTKRSEK-------------------------PGKGPRALVLTPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL+D M SGK++F L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFERLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TKDP I++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPTDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDD- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A++ E + + KIE++ +++P I G EP ++
Sbjct: 337 TGRAGRTGIAITFAEVNEYVKVHKIEKYINRKLPELTIEGMEPTRK 382
>gi|421559409|ref|ZP_16005283.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 92045]
gi|433488648|ref|ZP_20445810.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis M13255]
gi|254674247|emb|CBA10031.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
alpha275]
gi|402335908|gb|EJU71171.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 92045]
gi|432223481|gb|ELK79262.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis M13255]
Length = 462
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/406 (50%), Positives = 268/406 (66%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP A+ GRD++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
+ K P + PR LVLTPTRELA QV
Sbjct: 63 QRLTKRSEK-------------------------PGKGPRALVLTPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL+D M SGK++F L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFERLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TKDP I++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPSDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDD- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A++ E + + KIE++ +++P I G EP ++
Sbjct: 337 TGRAGRTGIAITFAEVNEYVKVHKIEKYINRKLPELTIEGMEPTRK 382
>gi|416161277|ref|ZP_11606336.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
N1568]
gi|325128442|gb|EGC51323.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
N1568]
Length = 462
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/406 (50%), Positives = 268/406 (66%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP A+ GRD++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
+ K P + PR LVLTPTRELA QV
Sbjct: 63 QRLTKRSEK-------------------------PGKGPRALVLTPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL+D M SGK++F L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFERLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TKDP I++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPTDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDD- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A++ E + + KIE++ +++P I G EP ++
Sbjct: 337 TGRAGRTGIAITFAEVNEYVKVHKIEKYINRKLPELTIEGMEPTRK 382
>gi|433536984|ref|ZP_20493489.1| helicase domain protein [Neisseria meningitidis 77221]
gi|432273920|gb|ELL29017.1| helicase domain protein [Neisseria meningitidis 77221]
Length = 462
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/406 (50%), Positives = 268/406 (66%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP A+ GRD++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
+ K P + PR LVLTPTRELA QV
Sbjct: 63 QRLTKRSEK-------------------------PGKGPRALVLTPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL+D M SGK++F L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFERLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TKDP I++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPSDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDD- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A++ E + + KIE++ +++P I G EP ++
Sbjct: 337 TGRAGRTGIAITFAEVNEYVKVHKIEKYINRKLPELTIEGMEPTRK 382
>gi|433473761|ref|ZP_20431122.1| helicase domain protein [Neisseria meningitidis 97021]
gi|433482323|ref|ZP_20439582.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2006087]
gi|433484306|ref|ZP_20441531.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2002038]
gi|433486575|ref|ZP_20443770.1| helicase domain protein [Neisseria meningitidis 97014]
gi|432210059|gb|ELK66025.1| helicase domain protein [Neisseria meningitidis 97021]
gi|432215573|gb|ELK71460.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2006087]
gi|432220404|gb|ELK76225.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2002038]
gi|432221860|gb|ELK77664.1| helicase domain protein [Neisseria meningitidis 97014]
Length = 462
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/406 (50%), Positives = 269/406 (66%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP A+ GRD++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
+ K P + PR LVLTPTRELA QV
Sbjct: 63 QRLTKRSEK-------------------------PGKGPRALVLTPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL+D M SGK++F+ L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFARLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TKDP I++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPSDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDD- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A++ E + + KIE++ +++P I G EP ++
Sbjct: 337 TGRAGRTGIAITFAEVNEYVKVHKIEKYINRKLPELTIEGMEPTRK 382
>gi|319638186|ref|ZP_07992949.1| ATP-dependent RNA helicase [Neisseria mucosa C102]
gi|317400459|gb|EFV81117.1| ATP-dependent RNA helicase [Neisseria mucosa C102]
Length = 469
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/406 (50%), Positives = 269/406 (66%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP A+ GRD++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVRSEGYESPTPIQAQAIPFALDGRDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
+ K P + PR LVLTPTRELA QV
Sbjct: 63 QRLTKRSEK-------------------------PGKGPRALVLTPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL+D M SGK++F+ L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFARLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TKDP I++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPTDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDD- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A++ E + + KIE++ +++P I G EP ++
Sbjct: 337 TGRAGRTGIAITFAEVNEYVKVHKIEKYIGRKLPELTIEGMEPTRK 382
>gi|385323970|ref|YP_005878409.1| putative ATP-dependent RNA helicase [Neisseria meningitidis 8013]
gi|385855420|ref|YP_005901933.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M01-240355]
gi|421565630|ref|ZP_16011403.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM3081]
gi|261392357|emb|CAX49897.1| putative ATP-dependent RNA helicase [Neisseria meningitidis 8013]
gi|325204361|gb|ADY99814.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M01-240355]
gi|402344065|gb|EJU79207.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM3081]
Length = 462
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/406 (50%), Positives = 268/406 (66%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP A+ GRD++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
+ K P + PR LVLTPTRELA QV
Sbjct: 63 QRLTKRSEK-------------------------PGKGPRALVLTPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL+D M SGK++F L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFERLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TKDP I++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPSDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDD- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A++ E + + KIE++ +++P I G EP ++
Sbjct: 337 TGRAGRTGIAITFAEVNEYVKVHKIEKYINRKLPELTIEGMEPTRK 382
>gi|429743607|ref|ZP_19277153.1| putative ATP-dependent RNA helicase RhlE [Neisseria sp. oral taxon
020 str. F0370]
gi|429164947|gb|EKY07038.1| putative ATP-dependent RNA helicase RhlE [Neisseria sp. oral taxon
020 str. F0370]
Length = 444
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/406 (50%), Positives = 270/406 (66%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L AL GY PT +Q QA+P A+ GRD++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFSDLHLDKNILSALTSAGYETPTPIQAQAVPFALEGRDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
+ +K P + PR LVLTPTRELA QV
Sbjct: 63 QRLTRRSDK-------------------------PGKGPRALVLTPTRELAAQVEKNALN 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y MK + +SI+GG + Q + LS+ ++++ATPGRL+D MNSGK++F L++L+LD
Sbjct: 98 YAKNMKWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMNSGKVDFDRLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV ATP RQT+LFSAT DG VG +A +TK+P ++++ +++
Sbjct: 158 EADRMLDMGFIDDIETIVAATPKERQTLLFSATWDGAVGKLARKLTKNPEVIEIERVDE- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A++ E + + KIE++ +++P I G EP ++
Sbjct: 337 TGRAGRTGTAITFAEVNEYVKVHKIEKYIGRKLPDLTIEGMEPTRK 382
>gi|451812523|ref|YP_007448977.1| superfamily II DNA and RNA helicase [Candidatus
Kinetoplastibacterium galatii TCC219]
gi|451778425|gb|AGF49373.1| superfamily II DNA and RNA helicase [Candidatus
Kinetoplastibacterium galatii TCC219]
Length = 422
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 208/423 (49%), Positives = 287/423 (67%), Gaps = 30/423 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+ IG++ + AL G+ PT VQE IP A+SG+DLIVS+QTGSGKTAAFMLP L
Sbjct: 1 MSFEKIGINSNIFSALKTAGFISPTPVQEATIPQALSGKDLIVSAQTGSGKTAAFMLPVL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ S K K N+N P++LVLTPTRELALQ+T AT Y
Sbjct: 61 -QMLSQKPK----SNNIN-------------------PQVLVLTPTRELALQITKATAAY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G+ M ++ +I+GGMPY Q++ LS+ +IL+ATPGRLID M S K++ +++Q LVLDE
Sbjct: 97 GINMPWLRIATIVGGMPYRNQIKALSKRVDILVATPGRLIDQMRSNKVSLANIQTLVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DIE IV TP RQTMLFSAT+D + +A+ + +P + + S ++K
Sbjct: 157 ADRMLDMGFIEDIETIVKNTPKDRQTMLFSATIDESIARLAKKMMNNPQHIALTSSKQKH 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NITQ + + D+ HK +LL+++L + + QA++FT+TK+ AD +A+ L+ +GF A LH
Sbjct: 217 DNITQKLFYADNNEHKVKLLNHVLNESSLDQAIIFTSTKKGADKLAECLSENGFAVAALH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD++Q R RT+ L++ +I++LVATD+AARGID+ I+H N+DLP EDYVHRIGRT
Sbjct: 277 GDMNQRQRTRTISQLQKKQIRVLVATDIAARGIDINGISHAVNFDLPMQAEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRYRFNNNNW 420
GRAGRNG A+SLV + E+ I++IE++ Q I E+I G EPK SR +N+N
Sbjct: 337 GRAGRNGSALSLVTNEEKHKIRRIEKYIGQTISTEIIEGLEPK------ISRTSHDNSNK 390
Query: 421 KTH 423
KT+
Sbjct: 391 KTN 393
>gi|261380720|ref|ZP_05985293.1| putative ATP-dependent RNA helicase RhlE [Neisseria subflava
NJ9703]
gi|284796437|gb|EFC51784.1| putative ATP-dependent RNA helicase RhlE [Neisseria subflava
NJ9703]
Length = 469
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 205/421 (48%), Positives = 273/421 (64%), Gaps = 28/421 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP A+ GRD++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALDGRDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
K K P + PR LVLTPTRELA QV
Sbjct: 63 QKLTKRSEK-------------------------PGKGPRALVLTPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL+D M SGK++F L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFERLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TKDP ++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPSDRQTLLFSATWDGAVGKLARKLTKDPETIEVERVDD- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRYRFNNNN 419
TGRAGR G A++ E + + KIE++ +++P I G EP ++ ++ ++ +
Sbjct: 337 TGRAGRTGIAITFAEVNEYVKVHKIEKYIGRKLPELTIEGMEPTRKRKSAGAKPK-GKGG 395
Query: 420 W 420
W
Sbjct: 396 W 396
>gi|296314174|ref|ZP_06864115.1| putative ATP-dependent RNA helicase RhlE [Neisseria polysaccharea
ATCC 43768]
gi|296839180|gb|EFH23118.1| putative ATP-dependent RNA helicase RhlE [Neisseria polysaccharea
ATCC 43768]
Length = 457
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/406 (50%), Positives = 268/406 (66%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP A+ GRD++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
+ K P + PR LVLTPTRELA QV
Sbjct: 63 QRLTKRSEK-------------------------PGKGPRALVLTPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL+D M SGK++F L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFGRLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TKDP +++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPSDRQTLLFSATWDGAVGKLARKLTKDPEVIEVERVDD- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A++ E + + KIE++ +++P I G EP ++
Sbjct: 337 TGRAGRTGIAITFAEVNEYVKVHKIEKYINRKLPELTIEGMEPTRK 382
>gi|241760530|ref|ZP_04758623.1| dead/deah box helicase [Neisseria flavescens SK114]
gi|241319034|gb|EER55536.1| dead/deah box helicase [Neisseria flavescens SK114]
Length = 464
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/406 (50%), Positives = 267/406 (65%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP A+ GRD++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALDGRDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
K K P + PR LVLTPTRELA QV
Sbjct: 63 QKLTKRSEK-------------------------PGKGPRALVLTPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL+D M SGK++F L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFDRLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TKDP ++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPSDRQTLLFSATWDGAVGKLARKLTKDPETIEVERVDD- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A++ E + + KIE++ +++P I G EP ++
Sbjct: 337 TGRAGRTGIAITFAEVNEYVKVHKIEKYIARKLPELTIEGMEPTRK 382
>gi|421540618|ref|ZP_15986763.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 93004]
gi|402318772|gb|EJU54288.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 93004]
Length = 462
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/406 (50%), Positives = 268/406 (66%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP A+ GRD++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
+ K P + PR LVLTPTRELA QV
Sbjct: 63 QRLTKRSEK-------------------------PGKGPRALVLTPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL+D M SGK++F L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFERLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TKDP +++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPSDRQTLLFSATWDGAVGKLARKLTKDPEVIEVERVDD- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A++ E + + KIE++ +++P I G EP ++
Sbjct: 337 TGRAGRTGIAITFAEVNEYVKVHKIEKYIGRKLPELTIEGMEPTRK 382
>gi|421542668|ref|ZP_15988775.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM255]
gi|402317498|gb|EJU53036.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM255]
Length = 462
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/406 (50%), Positives = 268/406 (66%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP A+ GRD++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
+ K P + PR LVLTPTRELA QV
Sbjct: 63 QRLTKRSEK-------------------------PGKGPRALVLTPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL+D M SGK++F L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFERLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TKDP I++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPSDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDD- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRL+D++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLIDHILRDADIDQCVIFTSTKAMTEVIADELYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A++ E + + KIE++ +++P I G EP ++
Sbjct: 337 TGRAGRTGIAITFAEVNEYVKVHKIEKYINRKLPELTIEGMEPTRK 382
>gi|349575990|ref|ZP_08887887.1| ATP-dependent RNA helicase RhlE [Neisseria shayeganii 871]
gi|348012457|gb|EGY51407.1| ATP-dependent RNA helicase RhlE [Neisseria shayeganii 871]
Length = 444
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/395 (51%), Positives = 272/395 (68%), Gaps = 27/395 (6%)
Query: 12 VLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIP 71
+L AL GY +PT +Q QA+PAA+ G+D++ S+QTGSGKTAAF+LP+L + K
Sbjct: 14 LLSALRSAGYEEPTPIQVQALPAALEGKDIMASAQTGSGKTAAFLLPSLQRITKRSEK-- 71
Query: 72 VMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATERYGLYMKKIKAI 130
P + PR+LVLTPTRELA QV + Y MK ++ +
Sbjct: 72 -----------------------PGKGPRILVLTPTRELAAQVEKNAQTYAQNMKWLRTV 108
Query: 131 SILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFI 190
+++GG + Q++ LSR ++++ATPGRL+DHM SG+I+F L++LVLDEADRMLDMGFI
Sbjct: 109 TLVGGSSFGFQIKALSRPVDVIVATPGRLMDHMRSGRIDFDRLEVLVLDEADRMLDMGFI 168
Query: 191 NDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFV 250
+DIE IV ATP RQT+LFSAT DG VG +A +T++P +++V ++ + K I + +L+
Sbjct: 169 DDIETIVAATPAERQTLLFSATWDGAVGKLARKLTRNPEVIEVARVDDQGK-IDEQLLYC 227
Query: 251 DDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNR 310
DD HKNRLLD++LRD + Q V+FTATK ++ +AD L GF A LHGD+ Q RNR
Sbjct: 228 DDKNHKNRLLDHILRDANIDQCVIFTATKAMSEQLADELYDKGFAANCLHGDMPQGWRNR 287
Query: 311 TLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAV 370
TL +LR+GRIKILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGRTGRAGR+G A+
Sbjct: 288 TLMDLRKGRIKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRHGLAL 347
Query: 371 SLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
S E + + KI+++ + +P VI G EP ++
Sbjct: 348 SFAEVNEYVMVHKIQKYINRTLPEVVIEGMEPTRK 382
>gi|167919550|ref|ZP_02506641.1| ATP-dependent RNA helicase [Burkholderia pseudomallei BCC215]
Length = 390
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 190/309 (61%), Positives = 249/309 (80%)
Query: 96 AQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLAT 155
A+P +LVLTPTRELA+QVT A YG ++++++ +SILGG+ Y +Q+ LL++NPEIL+AT
Sbjct: 10 ARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTVSILGGVAYGQQLMLLAKNPEILVAT 69
Query: 156 PGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDG 215
PGRL+DH+ G+I+ S L++LVLDEADRMLDMGFI+DI+ IV ATP TRQTMLFSATLDG
Sbjct: 70 PGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIDTIVAATPATRQTMLFSATLDG 129
Query: 216 IVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVF 275
+G++ + KDP +++ + + NI Q++ +VDD HK+RLLD+LLRD + QA++F
Sbjct: 130 KIGSLTNRLLKDPERIEITQKIESRSNIAQTVHYVDDRDHKDRLLDHLLRDVALDQAIIF 189
Query: 276 TATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDV 335
TATK DAD +A RL +GF +A LHGDL Q ARNRT+ LR R+++LVATDVAARGID+
Sbjct: 190 TATKIDADQLAGRLADAGFQSAALHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDI 249
Query: 336 PAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIE 395
P ITHVFNYDLPKF EDYVHRIGRTGRAGR+G AVSLV+HAE+ +K+IERF + +P+
Sbjct: 250 PGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGTAVSLVHHAEQGALKRIERFVRAPLPVN 309
Query: 396 VINGFEPKK 404
V+ GFEP+K
Sbjct: 310 VVEGFEPRK 318
>gi|167846330|ref|ZP_02471838.1| ATP-dependent RNA helicase [Burkholderia pseudomallei B7210]
Length = 347
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 190/309 (61%), Positives = 249/309 (80%)
Query: 96 AQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLAT 155
A+P +LVLTPTRELA+QVT A YG ++++++ +SILGG+ Y +Q+ LL++NPEIL+AT
Sbjct: 2 ARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTVSILGGVAYGQQLMLLAKNPEILVAT 61
Query: 156 PGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDG 215
PGRL+DH+ G+I+ S L++LVLDEADRMLDMGFI+DI+ IV ATP TRQTMLFSATLDG
Sbjct: 62 PGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIDTIVAATPATRQTMLFSATLDG 121
Query: 216 IVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVF 275
+G++ + KDP +++ + + NI Q++ +VDD HK+RLLD+LLRD + QA++F
Sbjct: 122 KIGSLTNRLLKDPERIEITQKIESRSNIAQTVHYVDDRDHKDRLLDHLLRDVALDQAIIF 181
Query: 276 TATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDV 335
TATK DAD +A RL +GF +A LHGDL Q ARNRT+ LR R+++LVATDVAARGID+
Sbjct: 182 TATKIDADQLAGRLADAGFQSAALHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDI 241
Query: 336 PAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIE 395
P ITHVFNYDLPKF EDYVHRIGRTGRAGR+G AVSLV+HAE+ +K+IERF + +P+
Sbjct: 242 PGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGTAVSLVHHAEQGALKRIERFVRAPLPVN 301
Query: 396 VINGFEPKK 404
V+ GFEP+K
Sbjct: 302 VVEGFEPRK 310
>gi|167824801|ref|ZP_02456272.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 9]
Length = 351
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 190/309 (61%), Positives = 249/309 (80%)
Query: 96 AQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLAT 155
A+P +LVLTPTRELA+QVT A YG ++++++ +SILGG+ Y +Q+ LL++NPEIL+AT
Sbjct: 17 ARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTVSILGGVAYGQQLMLLAKNPEILVAT 76
Query: 156 PGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDG 215
PGRL+DH+ G+I+ S L++LVLDEADRMLDMGFI+DI+ IV ATP TRQTMLFSATLDG
Sbjct: 77 PGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIDTIVAATPATRQTMLFSATLDG 136
Query: 216 IVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVF 275
+G++ + KDP +++ + + NI Q++ +VDD HK+RLLD+LLRD + QA++F
Sbjct: 137 KIGSLTNRLLKDPERIEITQKIESRSNIAQTVHYVDDRDHKDRLLDHLLRDVALDQAIIF 196
Query: 276 TATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDV 335
TATK DAD +A RL +GF +A LHGDL Q ARNRT+ LR R+++LVATDVAARGID+
Sbjct: 197 TATKIDADQLAGRLADAGFQSAALHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDI 256
Query: 336 PAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIE 395
P ITHVFNYDLPKF EDYVHRIGRTGRAGR+G AVSLV+HAE+ +K+IERF + +P+
Sbjct: 257 PGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGTAVSLVHHAEQGALKRIERFVRAPLPVN 316
Query: 396 VINGFEPKK 404
V+ GFEP+K
Sbjct: 317 VVEGFEPRK 325
>gi|167720206|ref|ZP_02403442.1| ATP-dependent RNA helicase [Burkholderia pseudomallei DM98]
Length = 347
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 190/309 (61%), Positives = 249/309 (80%)
Query: 96 AQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLAT 155
A+P +LVLTPTRELA+QVT A YG ++++++ +SILGG+ Y +Q+ LL++NPEIL+AT
Sbjct: 10 ARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTVSILGGVAYGQQLMLLAKNPEILVAT 69
Query: 156 PGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDG 215
PGRL+DH+ G+I+ S L++LVLDEADRMLDMGFI+DI+ IV ATP TRQTMLFSATLDG
Sbjct: 70 PGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIDTIVAATPATRQTMLFSATLDG 129
Query: 216 IVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVF 275
+G++ + KDP +++ + + NI Q++ +VDD HK+RLLD+LLRD + QA++F
Sbjct: 130 KIGSLTNRLLKDPERIEITQKIESRSNIAQTVHYVDDRDHKDRLLDHLLRDVALDQAIIF 189
Query: 276 TATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDV 335
TATK DAD +A RL +GF +A LHGDL Q ARNRT+ LR R+++LVATDVAARGID+
Sbjct: 190 TATKIDADQLAGRLADAGFQSAALHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDI 249
Query: 336 PAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIE 395
P ITHVFNYDLPKF EDYVHRIGRTGRAGR+G AVSLV+HAE+ +K+IERF + +P+
Sbjct: 250 PGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGTAVSLVHHAEQGALKRIERFVRAPLPVN 309
Query: 396 VINGFEPKK 404
V+ GFEP+K
Sbjct: 310 VVEGFEPRK 318
>gi|167911540|ref|ZP_02498631.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 112]
Length = 337
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 190/309 (61%), Positives = 249/309 (80%)
Query: 96 AQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLAT 155
A+P +LVLTPTRELA+QVT A YG ++++++ +SILGG+ Y +Q+ LL++NPEIL+AT
Sbjct: 3 ARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTVSILGGVAYGQQLMLLAKNPEILVAT 62
Query: 156 PGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDG 215
PGRL+DH+ G+I+ S L++LVLDEADRMLDMGFI+DI+ IV ATP TRQTMLFSATLDG
Sbjct: 63 PGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIDTIVAATPATRQTMLFSATLDG 122
Query: 216 IVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVF 275
+G++ + KDP +++ + + NI Q++ +VDD HK+RLLD+LLRD + QA++F
Sbjct: 123 KIGSLTNRLLKDPERIEITQKIESRSNIAQTVHYVDDRDHKDRLLDHLLRDVALDQAIIF 182
Query: 276 TATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDV 335
TATK DAD +A RL +GF +A LHGDL Q ARNRT+ LR R+++LVATDVAARGID+
Sbjct: 183 TATKIDADQLAGRLADAGFQSAALHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDI 242
Query: 336 PAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIE 395
P ITHVFNYDLPKF EDYVHRIGRTGRAGR+G AVSLV+HAE+ +K+IERF + +P+
Sbjct: 243 PGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGTAVSLVHHAEQGALKRIERFVRAPLPVN 302
Query: 396 VINGFEPKK 404
V+ GFEP+K
Sbjct: 303 VVEGFEPRK 311
>gi|437999624|ref|YP_007183357.1| ATP-dependent RNA helicase [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451813247|ref|YP_007449700.1| ATP-dependent RNA helicase [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
gi|429338858|gb|AFZ83280.1| ATP-dependent RNA helicase [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451779216|gb|AGF50096.1| ATP-dependent RNA helicase [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
Length = 468
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 212/454 (46%), Positives = 297/454 (65%), Gaps = 32/454 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+ IG++ +L AL G+ PT VQE IP A+SG+DLIVS+QTGSGKTAAFMLP L
Sbjct: 1 MSFEKIGINSNILSALKTSGFVSPTPVQEATIPQALSGKDLIVSAQTGSGKTAAFMLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ S K K N+N P++LVLTPTRELALQ+T AT Y
Sbjct: 61 -QMLSQKPK----SNNIN-------------------PQVLVLTPTRELALQITKATASY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G+ M ++ +I+GGMPY Q++ LS+ +IL+ATPGRLID M S K++ + +Q LVLDE
Sbjct: 97 GINMPWLRIATIVGGMPYRNQIRALSKRVDILVATPGRLIDQMKSNKVSLTSIQTLVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DIE IV TP RQTMLFSAT+D + +A+ + +P + + S ++K
Sbjct: 157 ADRMLDMGFIEDIETIVKNTPRDRQTMLFSATIDESIARLAKKMMNNPQHIALTSSKQKH 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NITQ + + D+ HK +LL+++L + + QA++FT+TK+ AD +A+ L+ +GF A LH
Sbjct: 217 DNITQKLFYADNNEHKVKLLNHVLNESSLDQAIIFTSTKKGADKLAECLSDNGFSVAALH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD++Q R RT+ L++ +I++LVATD+AARGID+ I+H N+DLP EDYVHRIGRT
Sbjct: 277 GDMNQRQRTRTISQLQKKQIRVLVATDIAARGIDINGISHAVNFDLPMQAEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPK-----KRIRTYYSRYRF 415
GRAGRNG A+SLV + E+ +++IE++ Q I E I G EPK I +++R
Sbjct: 337 GRAGRNGSALSLVTNEEKHKVRRIEKYIGQTISTETIEGLEPKVTRSSNDISNKRNKHRV 396
Query: 416 NNNNWKTHNINKSNITKRFYRQIKKTSISASSKN 449
N + + ++ N T R + + KT +KN
Sbjct: 397 NTSR---NGLSDKNNTPRRFSSVNKTKEKMDTKN 427
>gi|322417740|ref|YP_004196963.1| DEAD/DEAH box helicase [Geobacter sp. M18]
gi|320124127|gb|ADW11687.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M18]
Length = 442
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/407 (50%), Positives = 276/407 (67%), Gaps = 25/407 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+S+ L ++KA+ GYT+PT +Q ++IP A+SGRDLI S+QTG+GKTA+F+LPAL
Sbjct: 1 MSFESLNLSAPLVKAINACGYTEPTPIQAESIPLALSGRDLIGSAQTGTGKTASFVLPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ P K PR+LVLTPTRELA QV A + Y
Sbjct: 61 ERLLVPS---PARGKG---------------------PRILVLTPTRELANQVVDAVKTY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G +M+ ++ SILGGMPY QM LLS+ +I++ATPGRLIDH++ INFS L++LVLDE
Sbjct: 97 GKFMR-VRCGSILGGMPYREQMMLLSQPVDIIVATPGRLIDHLDRRSINFSRLEMLVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF D+++I A P RQT+LF+AT+D + +A+ + KDP+ + V+ +
Sbjct: 156 ADRMLDMGFSEDVDRIAAAAPAERQTLLFTATMDDAMAKLAQRLLKDPVRVAVDGQQLTN 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+I Q + DD+ HKNRLL +L+ D V +A++F+ATK+DAD +A L G AA LH
Sbjct: 216 LSIEQRLHVTDDMRHKNRLLQHLVADASVTKAIIFSATKKDADQLAFELYSQGHAAAALH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+ Q ARNRT+ N+RRG++++LVATDVAARG+DV I+HV NYDLPKF EDYVHRIGRT
Sbjct: 276 GDMSQGARNRTITNMRRGKVRLLVATDVAARGLDVSGISHVINYDLPKFAEDYVHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIR 407
GRAG G A+S + E + +IER T + +P VI G EP + +R
Sbjct: 336 GRAGATGIAISFCSMNEVAYLDRIERLTGKPLPQHVIEGLEPSRPLR 382
>gi|451936748|ref|YP_007460602.1| superfamily II DNA and RNA helicase [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
gi|451777671|gb|AGF48646.1| superfamily II DNA and RNA helicase [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
Length = 478
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/403 (50%), Positives = 273/403 (67%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+ IG+ + AL G+ PT VQE IP A+SG+DLIVS+QTGSGKTAAFMLP L
Sbjct: 1 MSFEKIGISSNIFSALKTAGFVSPTPVQEATIPQALSGKDLIVSAQTGSGKTAAFMLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
++ + NN P++LVLTPTRELALQ+T AT Y
Sbjct: 61 Q----------ILSQKPKSNN--------------INPQVLVLTPTRELALQITKATASY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G+ M ++ +I+GGMPY Q++ LS+ +IL+ATPGRLID M S K++ + +QILVLDE
Sbjct: 97 GINMPWLRIATIVGGMPYREQIKALSKRVDILVATPGRLIDQMRSNKVSLAGIQILVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DIE IV TP RQTMLFSAT+D + +A+ + P + + S ++K
Sbjct: 157 ADRMLDMGFIEDIETIVKNTPRDRQTMLFSATIDESIDRLAKKMMNSPQHISLTSSKQKH 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NITQ + + D+ HK +LL+++L + + QA++FT+TK+ AD +A+ L+ SGF A LH
Sbjct: 217 DNITQKLFYADNNEHKVKLLNHVLNEASLDQAIIFTSTKKGADKLAECLSDSGFSVAALH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD++Q R RT+ L++ +I++LVATD+AARGID+ I+H N+DLP EDYVHRIGRT
Sbjct: 277 GDMNQRQRTRTISQLQKKQIRVLVATDIAARGIDINGISHAVNFDLPMQAEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPK 403
GRAGRNG A+SLV + ER I++IE++ Q I E I G EPK
Sbjct: 337 GRAGRNGSALSLVTNEERHKIRRIEKYIGQTILAETIEGLEPK 379
>gi|255067653|ref|ZP_05319508.1| putative ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC
29256]
gi|255048127|gb|EET43591.1| putative ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC
29256]
Length = 457
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/406 (49%), Positives = 269/406 (66%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP A+ GRD++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVRSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
+ K P + PR LVLTPTRELA QV
Sbjct: 63 QRLTKRSEK-------------------------PGKGPRALVLTPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL+D M SGK++F+ L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFARLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TK+P I++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPTDRQTLLFSATWDGAVGKLARKLTKNPEIIEVERVDN- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADDLYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A++ E + + KIE++ +++P + G EP ++
Sbjct: 337 TGRAGRTGIAITFAEVNEYVKVHKIEKYIARKLPELTVEGMEPTRK 382
>gi|349609420|ref|ZP_08888815.1| hypothetical protein HMPREF1028_00790 [Neisseria sp. GT4A_CT1]
gi|348611981|gb|EGY61609.1| hypothetical protein HMPREF1028_00790 [Neisseria sp. GT4A_CT1]
Length = 457
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/406 (49%), Positives = 268/406 (66%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP A+ GRD++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVRSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
+ K P + PR LVLTPTRELA QV
Sbjct: 63 QRLTKRSEK-------------------------PGKGPRALVLTPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL+D M SGK++F+ L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFARLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TK+P I++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPTDRQTLLFSATWDGAVGKLARKLTKNPEIIEVERVDD- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLDY+LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDYILRDANIDQCVIFTSTKAMTEVIADDLYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A++ E + + KIE++ +++ + G EP ++
Sbjct: 337 TGRAGRTGIAITFAEVNEYVKVHKIEKYIDRKLTEVTVEGMEPTRK 382
>gi|340362171|ref|ZP_08684568.1| ATP-dependent RNA helicase RhlE [Neisseria macacae ATCC 33926]
gi|339887772|gb|EGQ77294.1| ATP-dependent RNA helicase RhlE [Neisseria macacae ATCC 33926]
Length = 457
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/406 (49%), Positives = 269/406 (66%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP A+ GRD++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVRSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
+ K P + PR LVLTPTRELA QV
Sbjct: 63 QRLTKRSEK-------------------------PGKGPRALVLTPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL+D M SGK++F+ L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFARLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TK+P I++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPTDRQTLLFSATWDGAVGKLARKLTKNPEIIEVERVDD- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADDLYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A++ E + + KIE++ +++P + G EP ++
Sbjct: 337 TGRAGRTGIAITFAEVNEYVKVHKIEKYIGRKLPELTVEGMEPTRK 382
>gi|345875861|ref|ZP_08827648.1| ATP-dependent RNA helicase RhlE [Neisseria weaveri LMG 5135]
gi|417956676|ref|ZP_12599628.1| ATP-dependent RNA helicase RhlE [Neisseria weaveri ATCC 51223]
gi|343968158|gb|EGV36390.1| ATP-dependent RNA helicase RhlE [Neisseria weaveri LMG 5135]
gi|343970323|gb|EGV38501.1| ATP-dependent RNA helicase RhlE [Neisseria weaveri ATCC 51223]
Length = 451
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 201/406 (49%), Positives = 274/406 (67%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L AL GY PT +Q QA+P A++ RD++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSALTAAGYESPTPIQAQAVPHALNNRDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
H + KP + PR LVLTPTRELA QV +
Sbjct: 63 Q-------------------------HLTKRSDKPGKGPRALVLTPTRELAAQVEKNAQT 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y MK ++ ++++GG + Q++ L R ++++ATPGRL+DHM SG+I+F L++L+LD
Sbjct: 98 YAKNMKWLRTVTLVGGSSFGPQIRALDRPVDLIVATPGRLMDHMRSGRISFDRLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV ATP +RQT+LFSAT DG VG +A +TK+P I+++ +++
Sbjct: 158 EADRMLDMGFIDDIETIVAATPESRQTLLFSATWDGAVGKLARKLTKNPEIVEIERVDE- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++ +AD L GF A L
Sbjct: 217 QGKIEEQLLYCDDLRHKNRLLDHILRDANIDQCVIFTSTKVMSEQLADELYEKGFSANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q+ RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQSWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A++ E + + KIE++ +++P I G EP ++
Sbjct: 337 TGRAGRTGLAITFAEVNEYVKVHKIEKYIGRKLPEMTIEGMEPTRK 382
>gi|419797020|ref|ZP_14322524.1| DEAD/DEAH box helicase [Neisseria sicca VK64]
gi|385698868|gb|EIG29205.1| DEAD/DEAH box helicase [Neisseria sicca VK64]
Length = 457
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/406 (49%), Positives = 268/406 (66%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP A+ GRD++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVRSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
+ K P + PR LVLTPTRELA QV
Sbjct: 63 QRLTKRSEK-------------------------PGKGPRALVLTPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL+D M SGK++F L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFDRLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TK+P I++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPTDRQTLLFSATWDGAVGKLARKLTKNPEIIEVERVDD- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADDLYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A++ E + + KIE++ +++P + G EP ++
Sbjct: 337 TGRAGRTGIAITFAEVNEYVKVHKIEKYIGRKLPELTVEGMEPTRK 382
>gi|350571452|ref|ZP_08939778.1| ATP-dependent RNA helicase RhlE [Neisseria wadsworthii 9715]
gi|349792116|gb|EGZ45981.1| ATP-dependent RNA helicase RhlE [Neisseria wadsworthii 9715]
Length = 441
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/414 (48%), Positives = 270/414 (65%), Gaps = 26/414 (6%)
Query: 8 LHEL-VLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASS 66
LH+ +L AL GY PT +Q QA+PAA+ GRD++ +QTGSGKTAAF+LP L +
Sbjct: 9 LHDKNILSALKTEGYETPTPIQAQALPAALEGRDIMAGAQTGSGKTAAFLLPTLQRLTKR 68
Query: 67 KNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKK 126
K PR LVL PTRELA QV + Y MK
Sbjct: 69 SEK------------------------SGKGPRALVLAPTRELAAQVEKNAQAYAKNMKW 104
Query: 127 IKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLD 186
+ ++I+GG + +Q++ LS+ ++++ATPGRL+D M+SGK++F L++L+LDEADRMLD
Sbjct: 105 FRTVTIVGGSSFGQQIRALSKPVDLVVATPGRLMDLMDSGKVDFDRLEVLILDEADRMLD 164
Query: 187 MGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQS 246
MGFI+DIE IV ATP +RQT+LFSAT DG VG +A +TK+P ++++ ++ Q I +
Sbjct: 165 MGFIDDIETIVAATPESRQTLLFSATWDGAVGKLARKLTKNPEVIEIERVDD-QGKIEEQ 223
Query: 247 ILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQN 306
+L+ DD HK+RLLDY+LRD + Q V+FT+TK +++AD L GF A LHGD+ Q
Sbjct: 224 LLYCDDKRHKDRLLDYILRDANIDQCVIFTSTKAMTEVLADELYDKGFAANCLHGDMPQG 283
Query: 307 ARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRN 366
RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGRTGRAGR
Sbjct: 284 WRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRT 343
Query: 367 GFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRYRFNNNNW 420
G A++ E + + KIE++ +++P I G EP ++ + + +W
Sbjct: 344 GLAITFAEVNEYVKVHKIEKYIGRKLPEMTIEGMEPTRKRNKPAGKPKGGKGSW 397
>gi|338733518|ref|YP_004671991.1| ATP-dependent RNA helicase DBP2 [Simkania negevensis Z]
gi|336482901|emb|CCB89500.1| ATP-dependent RNA helicase DBP2 [Simkania negevensis Z]
Length = 432
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 211/443 (47%), Positives = 287/443 (64%), Gaps = 28/443 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F ++ LH +LKA+ GY KPT +Q++AIP + G D+ S+QTG+GKTAAF+LPAL
Sbjct: 11 MTFNNLCLHPKILKAIQLAGYPKPTEIQQKAIPKIVQGFDIRASAQTGTGKTAAFLLPAL 70
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ S P K + PR+L+L PTRELA Q+ + +Y
Sbjct: 71 HRLIS-----PATKSGIG-------------------PRVLILAPTRELAQQIESQANKY 106
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
+++IK + ++GGMPY QM+ LSR EIL+ATPGRLID M KI+FS L++L+LDE
Sbjct: 107 SKSLQRIKTVCVVGGMPYPAQMRQLSRPHEILIATPGRLIDFMERNKIDFSRLEMLILDE 166
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF +E+IV ATP TRQT+LFSATL G V ++E + P+ + V++ ++K+
Sbjct: 167 ADRMLDMGFSKPVEQIVQATPSTRQTLLFSATLQGEVIKLSEKLLNKPMEIIVHAEQQKE 226
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+NI Q++ F DD+ HKNRLLD++L + G +VFT+TKR AD +A L A LH
Sbjct: 227 QNIKQTLHFADDLKHKNRLLDHILNQEETGHMIVFTSTKRHADQLARDLRDKQHPVAALH 286
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD++QN R+RTL LR+G+I+ILVATDVAARGIDV +ITHV NYDLP EDYVHRIGRT
Sbjct: 287 GDMNQNKRSRTLNQLRKGKIRILVATDVAARGIDVQSITHVINYDLPTNVEDYVHRIGRT 346
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP--KKR--IRTYYSRYRFN 416
GRAG G A+S V+ + + +KKI+ FT Q++ + G E KKR +R + + R
Sbjct: 347 GRAGATGQALSFVSDRDTLMMKKIQEFTGQKVDVVEFLGLEATVKKRSHLRQHRQKMRPK 406
Query: 417 NNNWKTHNINKSNITKRFYRQIK 439
H K K+ +R+ K
Sbjct: 407 QKENPFHKAKKDTFRKQKFRKRK 429
>gi|225024978|ref|ZP_03714170.1| hypothetical protein EIKCOROL_01867 [Eikenella corrodens ATCC
23834]
gi|224942208|gb|EEG23417.1| hypothetical protein EIKCOROL_01867 [Eikenella corrodens ATCC
23834]
Length = 431
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 199/394 (50%), Positives = 271/394 (68%), Gaps = 25/394 (6%)
Query: 12 VLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIP 71
+L AL GY +PT +Q QA+PAAI GRD++ S+QTGSGKTAAF+LP+L + +K
Sbjct: 14 LLAALRSAGYIEPTPIQVQALPAAIDGRDIMASAQTGSGKTAAFLLPSLQRITRRSDK-- 71
Query: 72 VMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAIS 131
PR+LVLTPTRELA QV + Y MK ++ ++
Sbjct: 72 ----------------------SGKGPRILVLTPTRELAAQVEKNAKIYAQNMKWLRTVT 109
Query: 132 ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFIN 191
++GG + Q++ L++ ++++ATPGRL+DHM SG+I+F L++LVLDEADRMLDMGFI+
Sbjct: 110 LVGGSSFGFQIKALAKPIDLVVATPGRLMDHMRSGRIDFDRLEVLVLDEADRMLDMGFID 169
Query: 192 DIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVD 251
DIE IV ATP +RQT+LFSAT DG VG +A +TK+P ++++ E Q I + + + D
Sbjct: 170 DIETIVAATPESRQTLLFSATWDGAVGKLARRLTKNPEVIEIER-EDNQGKIDEQLFYCD 228
Query: 252 DILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRT 311
D HKNRLLD++LRD + Q ++FT+TK ++ +AD L GF A LHGD+ QN RNRT
Sbjct: 229 DKNHKNRLLDHILRDANIDQCIIFTSTKAMSEQLADELYEKGFAANCLHGDMPQNWRNRT 288
Query: 312 LENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVS 371
L +LR+GRIK+LVATDVAARGIDVP+ITHV NYDLPK EDYVHRIGRTGRAGR+G A++
Sbjct: 289 LMDLRKGRIKVLVATDVAARGIDVPSITHVINYDLPKQAEDYVHRIGRTGRAGRHGLALT 348
Query: 372 LVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
E + + KIE++ +++P I G EP ++
Sbjct: 349 FAEVNEYVAVHKIEKYLGRKLPEFTIEGMEPTRK 382
>gi|240016422|ref|ZP_04722962.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA6140]
Length = 462
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 201/406 (49%), Positives = 264/406 (65%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP A+ G D++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
+ K P + PR LVL PTRELA QV
Sbjct: 63 QRLTKRSEK-------------------------PGKGPRALVLAPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL D M SGK++F L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGTSFGYQTRALSKPVDLIVATPGRLTDLMQSGKVDFERLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TKD I++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPADRQTLLFSATWDGAVGKLARKLTKDSEIIEVERVDG- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLTDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A++ E + + KIE++ +++P I G EP ++
Sbjct: 337 TGRAGRTGIAITFAEVNEYVKVHKIEKYINRKLPELTIEGMEPTRK 382
>gi|452126611|ref|ZP_21939194.1| ATP-dependent RNA helicase [Bordetella holmesii F627]
gi|452129988|ref|ZP_21942561.1| ATP-dependent RNA helicase [Bordetella holmesii H558]
gi|451921706|gb|EMD71851.1| ATP-dependent RNA helicase [Bordetella holmesii F627]
gi|451922848|gb|EMD72992.1| ATP-dependent RNA helicase [Bordetella holmesii H558]
Length = 552
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 216/418 (51%), Positives = 283/418 (67%), Gaps = 24/418 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+ +GL +L AL G+T+PT VQ AIP A++G DL+VSSQTGSGKTAAFMLPAL
Sbjct: 1 MSFEDLGLAPSILSALQTAGFTEPTPVQAAAIPRALAGADLMVSSQTGSGKTAAFMLPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
N++ M N K ++LVLTPTRELALQV AT Y
Sbjct: 61 -------NRVADMSPN-----------------KGVGVQILVLTPTRELALQVADATAAY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G + ++A +++GG+PY Q++ LSR ++L+ATPGRLIDH+ +G++ + + LVLDE
Sbjct: 97 GANLPGLRATTVVGGVPYGAQLKALSRRVDVLVATPGRLIDHLKAGRVKLNTVHTLVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDM FI DIE I++ P +RQT+LFSATLDG V +AE + + P ++++ K
Sbjct: 157 ADRMLDMSFIEDIETIIERLPESRQTLLFSATLDGSVARLAEKMMRSPERIEISGHRDKH 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NITQS+L+ DD HK RLLD+LLRD R+ QA+VFT+TKR AD +ADRL GF AA LH
Sbjct: 217 ANITQSLLYADDSSHKLRLLDHLLRDTRLDQAIVFTSTKRGADELADRLAEQGFAAAALH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD++Q R RTL L+RG++++LVATDVAARGIDV I+H N+DLP EDYVHRIGRT
Sbjct: 277 GDMNQRQRTRTLTQLQRGQVRVLVATDVAARGIDVQGISHAVNFDLPLQAEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRYRFNNN 418
GRAGR+G A +L H+ER +++IE + Q I E I G EP++ R RF N
Sbjct: 337 GRAGRDGLAYTLAVHSERHKVRRIEHYIGQTIAPETIAGLEPQRTARPSSGGPRFGGN 394
>gi|294670965|ref|ZP_06735821.1| hypothetical protein NEIELOOT_02671 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307452|gb|EFE48695.1| hypothetical protein NEIELOOT_02671 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 453
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 200/406 (49%), Positives = 267/406 (65%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP A+ GRD++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVSSEGYENPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
+ K P + PR LVLTPTRELA QV
Sbjct: 63 QRLTKRSEK-------------------------PGKGPRALVLTPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL+D M SGK++F L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFDRLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TK+P +++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPTDRQTLLFSATWDGAVGKLARKLTKNPEVVEVERVDD- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADDLYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A++ E + + KIE++ +++ + G EP ++
Sbjct: 337 TGRAGRTGIAITFAEVNEYVKVHKIEKYIDRKLNEVTVEGMEPTRK 382
>gi|268601522|ref|ZP_06135689.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|291043632|ref|ZP_06569348.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|268585653|gb|EEZ50329.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|291012095|gb|EFE04084.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
Length = 462
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 201/406 (49%), Positives = 264/406 (65%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP A+ G D++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
+ K P + PR LVL PTRELA QV
Sbjct: 63 QRLTKRSEK-------------------------PGKGPRALVLAPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL D M SGK++F L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGTSFGYQTRALSKPVDLIVATPGRLTDLMQSGKVDFERLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TKD I++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPADRQTLLFSATWDGAVGKLARKLTKDSEIIEVERVDG- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLTDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A++ E + + KIE++ +++P I G EP ++
Sbjct: 337 TGRAGRTGIAITFAEVNEYVKVHKIEKYINRKLPELTIEGMEPTRK 382
>gi|59801077|ref|YP_207789.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090]
gi|194098823|ref|YP_002001886.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
NCCP11945]
gi|254493889|ref|ZP_05107060.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268594948|ref|ZP_06129115.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268599176|ref|ZP_06133343.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268684482|ref|ZP_06151344.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|293398939|ref|ZP_06643104.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62]
gi|385335861|ref|YP_005889808.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
TCDC-NG08107]
gi|59717972|gb|AAW89377.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090]
gi|193934113|gb|ACF29937.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
NCCP11945]
gi|226512929|gb|EEH62274.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268548337|gb|EEZ43755.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268583307|gb|EEZ47983.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268624766|gb|EEZ57166.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|291610353|gb|EFF39463.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62]
gi|317164404|gb|ADV07945.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 462
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 201/406 (49%), Positives = 264/406 (65%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP A+ G D++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
+ K P + PR LVL PTRELA QV
Sbjct: 63 QRLTKRSEK-------------------------PGKGPRALVLAPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL D M SGK++F L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGTSFGYQTRALSKPVDLIVATPGRLTDLMQSGKVDFERLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TKD I++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPADRQTLLFSATWDGAVGKLARKLTKDSEIIEVERVDG- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLTDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A++ E + + KIE++ +++P I G EP ++
Sbjct: 337 TGRAGRTGIAITFAEVNEYVKVHKIEKYINRKLPELTIEGMEPARK 382
>gi|268596673|ref|ZP_06130840.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268603859|ref|ZP_06138026.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268682325|ref|ZP_06149187.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268550461|gb|EEZ45480.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268587990|gb|EEZ52666.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268622609|gb|EEZ55009.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
Length = 462
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 201/406 (49%), Positives = 264/406 (65%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP A+ G D++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
+ K P + PR LVL PTRELA QV
Sbjct: 63 QRLTKRSEK-------------------------PGKGPRALVLAPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL D M SGK++F L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGTSFGYQTRALSKPVDLIVATPGRLTDLMQSGKVDFERLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TKD I++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPADRQTLLFSATWDGAVGKLARKLTKDSEIIEVERVDG- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLTDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A++ E + + KIE++ +++P I G EP ++
Sbjct: 337 TGRAGRTGIAITFAEVNEYVKVHKIEKYINRKLPELTIEGMEPTRK 382
>gi|298368676|ref|ZP_06979994.1| ATP-dependent RNA helicase RhlE [Neisseria sp. oral taxon 014 str.
F0314]
gi|298282679|gb|EFI24166.1| ATP-dependent RNA helicase RhlE [Neisseria sp. oral taxon 014 str.
F0314]
Length = 443
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 201/406 (49%), Positives = 267/406 (65%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP A+ GRD++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVRSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
+ K P + PR LVLTPTRELA QV
Sbjct: 63 QRLTKRSEK-------------------------PGKGPRALVLTPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL+D M SGK++F L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFDRLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TK+P I++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPSDRQTLLFSATWDGAVGKLARKLTKNPEIIEVERVDD- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADDLYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A++ E + + KIE++ +++ + G EP ++
Sbjct: 337 TGRAGRTGIAITFAEVNEYVKVHKIEKYIDRKLTELTVEGMEPTRK 382
>gi|240013980|ref|ZP_04720893.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae DGI18]
gi|240121547|ref|ZP_04734509.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID24-1]
Length = 462
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 200/406 (49%), Positives = 264/406 (65%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP A+ G D++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
+ K P + PR LVL PTRELA QV
Sbjct: 63 QRLTKRSEK-------------------------PGKGPRALVLAPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL D M SGK++F L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGTSFGYQTRALSKPVDLIVATPGRLTDLMQSGKVDFERLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TKD I++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPADRQTLLFSATWDGAVGKLARKLTKDSEIIEVERVDG- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGID+P ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLTDLRKGRCKILVATDVAARGIDIPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A++ E + + KIE++ +++P I G EP ++
Sbjct: 337 TGRAGRTGIAITFAEVNEYVKVHKIEKYINRKLPELTIEGMEPTRK 382
>gi|261365074|ref|ZP_05977957.1| putative ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC
25996]
gi|288566497|gb|EFC88057.1| putative ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC
25996]
Length = 457
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 200/406 (49%), Positives = 267/406 (65%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP A+ GRD++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVRSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
+ K P + PR LVLTPTRELA QV
Sbjct: 63 QRLTKRSEK-------------------------PGKGPRALVLTPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL+D M SGK++F L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFDRLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TK+P +++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPTDRQTLLFSATWDGAVGKLARKLTKNPEVVEVERVDD- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADDLYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A++ E + + KIE++ +++ + G EP ++
Sbjct: 337 TGRAGRTGIAITFAEVNEYVKVHKIEKYIDRKLNEVTVEGMEPTRK 382
>gi|406915896|gb|EKD54936.1| hypothetical protein ACD_60C00032G0020 [uncultured bacterium]
Length = 457
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 208/461 (45%), Positives = 305/461 (66%), Gaps = 42/461 (9%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F L+ + KA+ GY PT VQ ++IP + G+D++ S+QTG+GKTA+F+LPAL
Sbjct: 1 MTFAEFNLNPHIFKAIDACGYKNPTPVQAKSIPEILQGKDVVASAQTGTGKTASFVLPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ ++SK +HK PR+L+LTPTRELA Q+T A +Y
Sbjct: 61 HRLSTSK-----------------ASHK---------PRILILTPTRELATQITTAVTKY 94
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G +++ + S++GGMPY +Q++ LS+ +I++ATPGRL+DHM++ +++ S +++LVLDE
Sbjct: 95 GKFLR-VNIASLVGGMPYRQQLRSLSKPVDIIVATPGRLLDHMSNRRLDLSAIEMLVLDE 153
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+D+++I ATP +RQT+LFSAT+D + ++ + K+P+ + ++ +
Sbjct: 154 ADRMLDMGFIDDVQEIARATPASRQTLLFSATVDKRLSHIINRLLKNPVQINFSNEQLTP 213
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
I+Q + D+ HK RLL + ++DK++ +A++F+ATK +AD +A L+ G+ +APLH
Sbjct: 214 VKISQELYMADNPQHKMRLLLHFVQDKKMFKAIIFSATKINADKLAGELSNQGYASAPLH 273
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GDL QN RNRTLE LRR +I+ LVATDVAARGIDV ITHV NYDLPKF EDYVHRIGRT
Sbjct: 274 GDLKQNVRNRTLEQLRRSKIQFLVATDVAARGIDVEDITHVINYDLPKFSEDYVHRIGRT 333
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRYRFNNNNW 420
GRAG++G A+SL ++R +I++IERF Q +P + I G EP+K T+ + + +
Sbjct: 334 GRAGKSGTAISLALASDRRHIERIERFMNQPLPRKTILGLEPRK--ETHPPKKNQASGHK 391
Query: 421 KTHNINKSNITKRFY------------RQIKKTSISASSKN 449
K N N KRFY ++ K S SA+ KN
Sbjct: 392 KKKNA-ADNARKRFYADNGESFSHKPKKKSAKRSYSAAPKN 431
>gi|358635486|dbj|BAL22783.1| ATP-dependent RNA helicase [Azoarcus sp. KH32C]
Length = 521
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 208/405 (51%), Positives = 276/405 (68%), Gaps = 24/405 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F +GL+EL+LKA+ GYT PT VQ QAIPAAI G DL+VSS TGSGKTAAF LP+L
Sbjct: 5 MTFNELGLNELLLKAIETTGYTVPTPVQMQAIPAAIGGADLMVSSHTGSGKTAAFTLPSL 64
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
++ K A PR+LVLTPTRELA QV A + Y
Sbjct: 65 NRLVDRKPA------------------------PGAGPRVLVLTPTRELAQQVEKAVKTY 100
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G +++ + ++GG P+ Q++ LSR ++++ATPGRLIDH+ KI S +++L+LDE
Sbjct: 101 GRHLRWLNTACLVGGAPFFAQVKQLSRPVDVVVATPGRLIDHLTRRKIKLSDVEVLILDE 160
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF+ DIE IV ATP +RQT+LFSATLDG+VG++A +T++ +++ + +
Sbjct: 161 ADRMLDMGFVEDIETIVAATPASRQTLLFSATLDGVVGSLASRMTRNAQRVEIAPTVENR 220
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NI Q ++ D+++HK RLL+ LL + QAVVFTATKR A+ ++ L GF AA LH
Sbjct: 221 GNIEQRLMMADNMVHKTRLLESLLGGDDLQQAVVFTATKRSAEEVSLALQEKGFAAAALH 280
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+HQ ARNRTL+ LR+GRI +LVATDVAARGIDV I+HV N+D P+ EDYVHRIGRT
Sbjct: 281 GDMHQTARNRTLDKLRQGRIGVLVATDVAARGIDVAGISHVINFDPPRQVEDYVHRIGRT 340
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
GRAGR+G A+++ E I+ IERFT +++ + VI G EP R
Sbjct: 341 GRAGRDGIAITMSGPREMGIIRAIERFTGKRLDVHVIEGLEPSAR 385
>gi|268686791|ref|ZP_06153653.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|268627075|gb|EEZ59475.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
Length = 462
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 200/406 (49%), Positives = 263/406 (64%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP A+ G D++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
+ K P + PR LVL PTRELA QV
Sbjct: 63 QRLTKRSEK-------------------------PGKGPRALVLAPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL D M SGK++F L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGTSFGYQTRALSKPVDLIVATPGRLTDLMQSGKVDFERLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TKD I++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPADRQTLLFSATWDGAVGKLARKLTKDSEIIEVERVDG- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLTDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
TGRAGR G A++ E + + KIE++ +++P I G E ++
Sbjct: 337 TGRAGRTGIAITFAEVNEYVKVHKIEKYINRKLPELTIEGMESTRK 382
>gi|394988530|ref|ZP_10381365.1| dead/deah box helicase domain-containingprotein [Sulfuricella
denitrificans skB26]
gi|393791909|dbj|GAB71004.1| dead/deah box helicase domain-containingprotein [Sulfuricella
denitrificans skB26]
Length = 352
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 198/368 (53%), Positives = 262/368 (71%), Gaps = 25/368 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+ + L+ +L+A+ GYT+P+ +Q AIP ++G DL+ S+QTG+GKTAAF+LPAL
Sbjct: 1 MSFEKLNLNPAILQAIADSGYTEPSPIQAAAIPEVLAGHDLMASAQTGTGKTAAFILPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
E + K PR+LVLTPTRELA QV A +Y
Sbjct: 61 QYLT------------------------EPSQSKSKGPRILVLTPTRELANQVNDAARKY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
+M+ +K +SILGGMPY Q +LLS+ +IL+ATPGRLIDH++ G+I+FS L++LVLDE
Sbjct: 97 SKHMR-VKTVSILGGMPYPLQNKLLSQPVDILVATPGRLIDHLDRGRIDFSRLEMLVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+D+EKI ATP +RQT+LFSATL+G + +A+ + KDP +++ + + K
Sbjct: 156 ADRMLDMGFIDDVEKIAAATPASRQTLLFSATLEGTIATLAKRLLKDPKRIQMTAQQAKH 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+NI Q + VDD+ HKNRLL +LL D V QA+VFT+TKRDAD++A+ L G AA LH
Sbjct: 216 ENIEQRLHIVDDMSHKNRLLQHLLTDINVKQAIVFTSTKRDADMLAEDLFALGHQAAALH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD++Q ARNRTL +R G IK+LVATDVAARG+DV I+HV N+DLPKF EDYVHRIGRT
Sbjct: 276 GDMNQGARNRTLTRMRSGAIKVLVATDVAARGLDVAGISHVINFDLPKFAEDYVHRIGRT 335
Query: 361 GRAGRNGF 368
GRAG +G
Sbjct: 336 GRAGSSGL 343
>gi|297620744|ref|YP_003708881.1| ATP-dependent RNA helicase DBP2 [Waddlia chondrophila WSU 86-1044]
gi|297376045|gb|ADI37875.1| ATP-dependent RNA helicase DBP2 [Waddlia chondrophila WSU 86-1044]
Length = 439
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 211/455 (46%), Positives = 288/455 (63%), Gaps = 31/455 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F ++ LH +LKAL GY PT +Q +AIP A+ G DL S+QTGSGKTAAF+LPAL
Sbjct: 1 MTFDALNLHSDLLKALNAAGYKSPTEIQCKAIPKAVKGFDLRASAQTGSGKTAAFLLPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H ++ K V PR+L+L+PTRELA+Q+ ++Y
Sbjct: 61 HHCVANPRKPTV------------------------GPRVLILSPTRELAMQIATQADKY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
++ ++K++ I GG+PY Q + L R EIL+ATPGRLID++N IN S ++ILVLDE
Sbjct: 97 SKFLNRVKSVCISGGVPYHVQQRKLRRPYEILIATPGRLIDYINQKAINLSAIEILVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI +EKI ATP +RQT+LFSAT+ G V N++ + +P+ + ++S + K
Sbjct: 157 ADRMLDMGFIEPVEKIAAATPSSRQTLLFSATMQGSVLNLSNRLLNEPMDIVIHSEKTKH 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+NITQ + +VD + HKN+LL+++L D V A+VFT+TKR A + L+ G LA LH
Sbjct: 217 ENITQKLHYVDGLQHKNQLLEHILNDDVVKHAIVFTSTKRHASQLVFELHDKGLLAGALH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+ Q R+RT+ LR G+IK+LVATDVAARGIDV ITHV N+DLP+ EDYVHRIGRT
Sbjct: 277 GDMSQRQRSRTIAQLRTGKIKVLVATDVAARGIDVQNITHVINFDLPRNVEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSR--YRFNNN 418
GRAG G A+S + + +KKIE +T Q I + V+ G EPK I+T + + N
Sbjct: 337 GRAGAAGTALSFASGKDTSLVKKIEEYTGQPIDVAVVAGLEPKP-IKTEHKNKPAKRPAN 395
Query: 419 NWKTHNINKSNITKRFYR----QIKKTSISASSKN 449
WK + +K R ++ Q + T S S K
Sbjct: 396 KWKGKHRHKKPSAGRAFKGSQQQERPTQTSPSWKG 430
>gi|404491935|ref|YP_006716041.1| ATP-dependent RNA helicase RhlE [Pelobacter carbinolicus DSM 2380]
gi|77544066|gb|ABA87628.1| ATP-dependent RNA helicase RhlE [Pelobacter carbinolicus DSM 2380]
Length = 435
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 207/450 (46%), Positives = 281/450 (62%), Gaps = 28/450 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F + L +LKAL GY PT +Q QA+P A++GRDLI S+ TG+GKTAAFMLPAL
Sbjct: 1 MDFSELKLDPRILKALTDCGYHVPTPIQAQAVPEALAGRDLIASAGTGTGKTAAFMLPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ KI K PRMLVL PTRELA QV A Y
Sbjct: 61 QRL-----------------TVKIARRK-------GAPRMLVLAPTRELAGQVMDAARVY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ A+ +LGG+PY Q + L++ ++++ATPGRL+DH+ I+ S L++LVLDE
Sbjct: 97 GKYLGLTTAV-LLGGVPYRDQFRALAKPLDLVVATPGRLLDHLQRRSIDLSCLEMLVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF D++K+ A P RQTM+F+ATL+ + MA + DP + + ++
Sbjct: 156 ADRMLDMGFKEDVDKVCAAAPRQRQTMMFTATLNDAMQKMARRLLDDPFRIDIAVVKNVS 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+I Q + D+ HKNRLL +LL+ + QA+VF+ATKRDAD +A L+ G+ AA LH
Sbjct: 216 DHIEQHLHVADNRQHKNRLLQHLLKHSDISQAIVFSATKRDADSLARDLSAQGYRAAALH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD++Q ARNRT+ +LRRGRI++LVATDVAARG+DV I+HVFNYDLPKF EDYVHRIGRT
Sbjct: 276 GDMNQGARNRTVRDLRRGRIRVLVATDVAARGLDVAGISHVFNYDLPKFAEDYVHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRYRFNNNNW 420
GRAG G A+S V+ AE +++I+ F +++P I G EP+ +R + R +
Sbjct: 336 GRAGATGVAISFVSGAEVSALRRIQHFIGRELPRREIPGLEPRFPLRAASAEGR---RRY 392
Query: 421 KTHNINKSNITKRFYRQIKKTSISASSKNS 450
K + N+S Y +K S+ S
Sbjct: 393 KGNGPNRSGRKPASYFSGRKERQGGCSERS 422
>gi|171059208|ref|YP_001791557.1| DEAD/DEAH box helicase [Leptothrix cholodnii SP-6]
gi|170776653|gb|ACB34792.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
Length = 502
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 199/405 (49%), Positives = 269/405 (66%), Gaps = 17/405 (4%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F ++GLHE +LK++ GY PT VQ Q IP A+ G DL V S TGSGKTAAF+LPAL
Sbjct: 1 MTFDTLGLHEAILKSVTAAGYDTPTDVQAQTIPPALQGLDLRVCSNTGSGKTAAFVLPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ +++N K R + + PR+LVL PTRELA+QV+ A Y
Sbjct: 61 QRVLAARND----------------PSKARAKGQVCGPRVLVLAPTRELAMQVSKAASTY 104
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ ++ +I+GG+PY Q+ L + +IL+ATPGRLIDH+NSGK +++L+LDE
Sbjct: 105 GQHVAGLRVATIVGGVPYPAQLAALRKPLDILIATPGRLIDHLNSGKAVLGDVEMLILDE 164
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITK-DPLILKVNSIEKK 239
ADRMLDMGFI DIE+I ++ P RQT++ SAT G VG +A+ I K D +++ S
Sbjct: 165 ADRMLDMGFIEDIERIAESLPQERQTVMVSATFAGQVGRLADQILKSDAKRIEITSHTDN 224
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+NI Q +L+ D I HK +LL++LL ++ + QA+VFT+T+RDAD +A L G APL
Sbjct: 225 HENIEQQLLWADSIEHKAKLLEHLLTEREMQQALVFTSTQRDADELAAHLYELGHAVAPL 284
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HG + Q R+RTL LR G IK+L+ATDVAARGIDVP I+HV N+ LP EDYVHRIGR
Sbjct: 285 HGGMPQGRRSRTLMALRNGEIKVLIATDVAARGIDVPTISHVINFGLPMKAEDYVHRIGR 344
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
TGRAGR G A++L + I++I++FT Q IP+ VI G EP +
Sbjct: 345 TGRAGRTGRAITLAERRDVGMIRRIQQFTTQTIPVTVIAGLEPTR 389
>gi|383757214|ref|YP_005436199.1| ATP-dependent RNA helicase RhlE [Rubrivivax gelatinosus IL144]
gi|381377883|dbj|BAL94700.1| ATP-dependent RNA helicase RhlE [Rubrivivax gelatinosus IL144]
Length = 523
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 198/403 (49%), Positives = 272/403 (67%), Gaps = 17/403 (4%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F ++GL E + +A+ GYT PT VQ +AIP A++G DL+VSS TGSGKTA+F+LPAL
Sbjct: 1 MSFDTLGLPEALARAVADAGYTAPTEVQSRAIPPALAGADLMVSSSTGSGKTASFVLPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ +++ K R + + PR+LVL PTRELA+QV AT Y
Sbjct: 61 TRILATRGD-----------------GKRREKGVISGPRILVLAPTRELAMQVAKATNDY 103
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G +++ ++ +++GG+PY Q++ L ++L+ATPGRL+DHM SG+ +++++LVLDE
Sbjct: 104 GRHVQGLRVATVVGGVPYGAQLKALRGPLDVLIATPGRLMDHMASGQAVLANVEMLVLDE 163
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI I ATP RQT+++SAT G VG +AE++ ++P +++ S
Sbjct: 164 ADRMLDMGFIDDIHHIASATPAARQTVMYSATFAGHVGRLAEDLLREPQRIEIASHTDVH 223
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+I Q + + D+ HKN LLD++L ++ V QAVVFT+T+RDAD +ADRL G A LH
Sbjct: 224 ADIEQRLHWADNFAHKNALLDHILTERSVEQAVVFTSTQRDADWLADRLAEMGHHVASLH 283
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G Q RNR L+ LR +KILVATDVAARGIDVP I+HV N+ LP EDYVHRIGRT
Sbjct: 284 GGHPQGRRNRVLQGLRSRDLKILVATDVAARGIDVPTISHVINFGLPMKAEDYVHRIGRT 343
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPK 403
GRAGR+G AV+L + I +I+RFT Q+IP I G EPK
Sbjct: 344 GRAGRSGLAVTLAERGDAGMIHRIQRFTTQRIPAATIEGLEPK 386
>gi|375107094|ref|ZP_09753355.1| DNA/RNA helicase, superfamily II [Burkholderiales bacterium
JOSHI_001]
gi|374667825|gb|EHR72610.1| DNA/RNA helicase, superfamily II [Burkholderiales bacterium
JOSHI_001]
Length = 457
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 203/401 (50%), Positives = 266/401 (66%), Gaps = 16/401 (3%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F +GL + +L AL K GYT+PT VQ AI A++GRDL+VS+QTGSGKTAAF+LPAL +
Sbjct: 28 FAQLGLAKELLFALDKAGYTEPTPVQAAAIGPALAGRDLLVSAQTGSGKTAAFVLPALQR 87
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
++ P ++ Q + PR+LVL PTRELA QVT A YG
Sbjct: 88 ILEARRD-PAQRRPKGQVSG---------------PRVLVLAPTRELAQQVTQAAVTYGR 131
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
++ ++ S++GG+PY Q++ L +IL+ATPGRL+D M SG + +Q LVLDEAD
Sbjct: 132 GVQGLRVASLVGGVPYHAQLKALRGPLDILIATPGRLMDLMGSGSAVLASVQTLVLDEAD 191
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLDMGFI+DI I A P RQT++FSAT G VGN+A +T+DP + V+S +
Sbjct: 192 RMLDMGFIDDIHFIAQALPTERQTVMFSATFGGHVGNLARELTRDPQRIAVDSHTETHAQ 251
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
I Q + + D +LHK++LL++LL D+ + QAVVFTAT+RDAD +AD+L G A LHG
Sbjct: 252 IEQRLYWADGMLHKHKLLEHLLADRDLDQAVVFTATQRDADEVADKLAQIGHAVAALHGG 311
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q R R L LR G +++LVATDVAARGIDVP ITHV N+ LP EDYVHRIGRTGR
Sbjct: 312 MPQGRRTRVLNALRMGHLRVLVATDVAARGIDVPGITHVINHGLPMKAEDYVHRIGRTGR 371
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPK 403
AGRNG A++L + +++IERFT Q I VI G EP+
Sbjct: 372 AGRNGMAITLAERRDTGMVRRIERFTTQPIATAVIPGLEPR 412
>gi|225075877|ref|ZP_03719076.1| hypothetical protein NEIFLAOT_00900 [Neisseria flavescens
NRL30031/H210]
gi|224952823|gb|EEG34032.1| hypothetical protein NEIFLAOT_00900 [Neisseria flavescens
NRL30031/H210]
Length = 463
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 198/406 (48%), Positives = 263/406 (64%), Gaps = 33/406 (8%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP A+ GRD++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
+ K P + PR LVLTPTRELA QV
Sbjct: 63 QRLTKRSEK-------------------------PGKGPRALVLTPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL+D M SGK++F L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFERLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TKDP +++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPADRQTLLFSATWDGAVGKLARKLTKDPEVIEVERVDD- 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIGR
Sbjct: 277 HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
T G A++ E + + KIE++ +++P I G EP ++
Sbjct: 337 T------GIAITFAEVNEYVKVHKIEKYINRKLPELTIEGMEPTRK 376
>gi|430377251|ref|ZP_19431384.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
macacae 0408225]
gi|429540388|gb|ELA08417.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
macacae 0408225]
Length = 613
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/403 (47%), Positives = 277/403 (68%), Gaps = 22/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F +GL ++LK++ K GYT PT +Q +AIP AI GRDL++S+QTGSGKTAAF+LP L
Sbjct: 51 LGFADLGLSNILLKSIEKTGYTTPTPIQAKAIPVAIEGRDLLLSAQTGSGKTAAFVLPIL 110
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ +++ P +K HK + + L+LTPTRELA QV+ + RY
Sbjct: 111 HQLSNT----PAIK---------TKQHKSKA------VKALILTPTRELAHQVSDSIRRY 151
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G M+ + ++ ++GG Y Q++ L + +I++ATPGRL+DH+++G+++ S L +LVLDE
Sbjct: 152 GSSMRDLFSVPLVGGSAYGGQIRALKKGVQIIIATPGRLLDHISAGRVDLSDLSMLVLDE 211
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF +DI I+DATP +RQT++ SAT DG VG +AE+ T++P + SI+ +
Sbjct: 212 ADRMLDMGFADDINAILDATPSSRQTIMSSATWDGAVGKIAESFTENPERI---SIKVET 268
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+I + + F D+ HKN+LL++L+ D QA++FTATKR ++ +A+RL G LH
Sbjct: 269 AHIDEKVYFCDNFDHKNKLLEHLICDNERSQAIIFTATKRSSEELAERLQEWGHKVCYLH 328
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GDL Q RNR + +LR G+ +++VATDVAARGID+P I+HVFNYDLP+ EDYVHRIGR+
Sbjct: 329 GDLPQGKRNRIVADLRSGKYQLVVATDVAARGIDLPNISHVFNYDLPRQVEDYVHRIGRS 388
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPK 403
GRAGR G A++L + +R + I R+ K+ + V+ G EPK
Sbjct: 389 GRAGRTGIAINLCSRDDRRQLGNINRYLKRDMSEAVVEGLEPK 431
>gi|429463016|ref|YP_007184479.1| DEAD/DEAH box helicase family protein [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|451811795|ref|YP_007448250.1| ATP-dependent RNA helicase [Candidatus Kinetoplastibacterium
crithidii TCC036E]
gi|429338530|gb|AFZ82953.1| DEAD/DEAH box helicase family protein [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|451776953|gb|AGF47952.1| ATP-dependent RNA helicase [Candidatus Kinetoplastibacterium
crithidii TCC036E]
Length = 467
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 203/458 (44%), Positives = 297/458 (64%), Gaps = 31/458 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+++GL+ +L A+ G+ PT VQ+ IP AI +DL+VS+QTGSGKTAAFMLP L
Sbjct: 1 MSFENLGLNANILNAIKATGFESPTPVQQATIPKAILKQDLVVSAQTGSGKTAAFMLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ K + N I ++LVLTPTRELA+Q+T A Y
Sbjct: 61 QHLSEKKAQ-----------NTSI--------------QVLVLTPTRELAMQITKAASVY 95
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G + ++ +I+GGMPY Q++ LS+ +IL+ATPGRLID M SG+++ ++ LVLDE
Sbjct: 96 GSNLHWLRVATIVGGMPYKAQIKALSKRIDILVATPGRLIDQMQSGRVDLKNVHTLVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI+ IV P +QTMLFSAT+D + N+A+ + +P + +N+ ++
Sbjct: 156 ADRMLDMGFIDDIQTIVAELPKEKQTMLFSATIDNSIMNLAKQMMNNPERISLNNNKQSH 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NI Q +++VDD HK ++L +LL ++ + QA+VFT+TKR AD +++ L+ +GF A LH
Sbjct: 216 NNIEQKLIYVDDYKHKIKILQHLLGNENLDQAIVFTSTKRGADDLSNHLSDNGFAVAALH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD++Q R RTL L++ +++IL+ATDVAARGID+ I+H N+DLP EDYVHRIGRT
Sbjct: 276 GDMNQRQRTRTLSQLQKKQLQILIATDVAARGIDIQGISHAINFDLPMQAEDYVHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP----KKRIRTYYSR-YRF 415
GRAGRNG A++L +H+E+ +++IE + + I IEVI G E KK I+ R Y +
Sbjct: 336 GRAGRNGEALTLASHSEKHKVRRIENYIGKNINIEVIIGLESTNTFKKNIKESKPRSYSY 395
Query: 416 -NNNNWKTHNINKSNITKRFYRQIKKTSISASSKNSIN 452
+NN KT + + F + ++ +S S N+ N
Sbjct: 396 KTDNNKKTRSYSNKTAKPSFSDRAREDRLSTSKTNNDN 433
>gi|257454198|ref|ZP_05619468.1| cold-shock DEAD box protein A homolog [Enhydrobacter aerosaccus
SK60]
gi|257448371|gb|EEV23344.1| cold-shock DEAD box protein A homolog [Enhydrobacter aerosaccus
SK60]
Length = 777
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 193/401 (48%), Positives = 274/401 (68%), Gaps = 12/401 (2%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F ++GL +LK++V GYT PT +Q +AIPAA+ GRDL++S+QTGSGKTAAF+LP LH+
Sbjct: 71 FTALGLSGSLLKSIVATGYTTPTPIQARAIPAALEGRDLLLSAQTGSGKTAAFVLPILHQ 130
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
+ + K +K + +R R +P + L+LTPTRELA QV + +YG
Sbjct: 131 LSELQAKEKAAEKTAS---------GKRGRQQPKVVQALILTPTRELANQVQDSIRKYGS 181
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
MK + ++ ++GG Y Q++ L + +I++ATPGRL+DH+N+ ++N S L +LVLDEAD
Sbjct: 182 AMKDLYSVPLVGGAAYSGQIRALKKGVQIIVATPGRLLDHINAQRVNLSDLTMLVLDEAD 241
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLDMGF +DI I++ATP RQT++ SAT DG VG +AE+ TKDP + +I+ + +
Sbjct: 242 RMLDMGFADDINAILEATPAHRQTIMSSATWDGPVGKIAESFTKDPERI---NIKVETAH 298
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
I + + F D+ HKN+LL+ L+ D GQA++FTATKR ++ +A+RL A LHGD
Sbjct: 299 IDEKVYFCDNFDHKNKLLEQLICDPERGQAIIFTATKRSSEEVAERLQQWDHKACYLHGD 358
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
L Q+ RNR + +LR G+ I+VATDVAARG+D+P ITHVFNYDLP+ EDYVHRIGR+GR
Sbjct: 359 LPQSKRNRIVSDLRSGKFDIVVATDVAARGLDLPNITHVFNYDLPRQVEDYVHRIGRSGR 418
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPK 403
AGR G A++L + +R I R+ K+ I + G EP+
Sbjct: 419 AGRTGIAINLCSRDDRRQFGNIARYLKRDINEAQVEGLEPR 459
>gi|189425609|ref|YP_001952786.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ]
gi|189421868|gb|ACD96266.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ]
Length = 430
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/404 (47%), Positives = 272/404 (67%), Gaps = 30/404 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F + LH + KA+ GY PT +Q +AIP A+SGRDLI S+QTG+GKTAAF++PAL
Sbjct: 1 MSFAELNLHASIQKAISVCGYATPTPIQAEAIPQALSGRDLIASAQTGTGKTAAFIIPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ--PRMLVLTPTRELALQVTAATE 118
+ A PA PR+LVLTPTRELA QV +
Sbjct: 61 ERLAKPG---------------------------PAGIGPRVLVLTPTRELAAQVADSVA 93
Query: 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
RYG +++ ++ SI+GGMPY Q++LL + ++++ATPGRLIDH+ G+I+ S +++LVL
Sbjct: 94 RYGRFLR-MRYGSIVGGMPYPDQVRLLRQPVDLIVATPGRLIDHLERGRIDLSRVELLVL 152
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF + +++I ATP RQT+LF+AT+D + +A + KDP + ++S ++
Sbjct: 153 DEADRMLDMGFTDAVDQIAAATPKKRQTLLFTATMDDPMARLAGRLLKDPSRIAISSPKE 212
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+I Q + D++ HK+++L +LL D + QA++F+ATKRDAD +A L G AA
Sbjct: 213 NHDSIEQRMHLTDNLGHKHKMLHHLLEDPTITQAIIFSATKRDADTLARDLYDRGLSAAA 272
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
LHGD+ Q AR RTL NLRRG+++ LVATDVAARG+D+ I+HV N+DLP+ EDYVHRIG
Sbjct: 273 LHGDMTQGARTRTLTNLRRGKVRFLVATDVAARGLDINGISHVINFDLPRAAEDYVHRIG 332
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
RTGRAG G A+S V+ A+ + +++I+R+T Q + + I G EP
Sbjct: 333 RTGRAGATGVAISFVSPADAVYLQRIQRYTGQTVQMHTIPGLEP 376
>gi|332525252|ref|ZP_08401425.1| DEAD/DEAH box helicase domain-containing protein [Rubrivivax
benzoatilyticus JA2]
gi|332108534|gb|EGJ09758.1| DEAD/DEAH box helicase domain-containing protein [Rubrivivax
benzoatilyticus JA2]
Length = 520
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 195/396 (49%), Positives = 264/396 (66%), Gaps = 17/396 (4%)
Query: 8 LHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSK 67
+ E + +A+ GYT PT VQ +AIP A+ G DL+VSS TGSGKTA+F+LPAL + +++
Sbjct: 1 MPEALARAVADAGYTTPTEVQSRAIPPALGGADLMVSSSTGSGKTASFVLPALTRILAAR 60
Query: 68 NKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKI 127
K R + + PR+LVL PTRELA+QV AT YG +++ +
Sbjct: 61 GD-----------------GKRREKGVVSGPRILVLAPTRELAMQVAKATNDYGRHVQGL 103
Query: 128 KAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDM 187
+ +I+GG+PY Q++ L ++L+ATPGRL+DHM SG+ +++++LVLDEADRMLDM
Sbjct: 104 RVATIVGGVPYGAQLKALRGPLDVLIATPGRLMDHMASGRAVLANVEMLVLDEADRMLDM 163
Query: 188 GFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSI 247
GFI+DI I ATP RQT+++SAT G VG +AE + ++P +++ S +I Q +
Sbjct: 164 GFIDDIHHIASATPAARQTVMYSATFAGHVGRLAEELLREPQRIEIASHTDVHADIEQRL 223
Query: 248 LFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNA 307
+ D+ HKN LLD++L ++ V QAVVFT+T+RDAD +ADRL G A LHG Q
Sbjct: 224 HWADNFAHKNALLDHILTERSVEQAVVFTSTQRDADWLADRLAEMGHHVASLHGGHPQGR 283
Query: 308 RNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNG 367
RNR L+ LR +KILVATDVAARGIDVP I+HV N+ LP EDYVHRIGRTGRAGR+G
Sbjct: 284 RNRVLQGLRSRDLKILVATDVAARGIDVPTISHVINFGLPMKAEDYVHRIGRTGRAGRSG 343
Query: 368 FAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPK 403
AV+L + I +I+RFT Q+IP I G EPK
Sbjct: 344 LAVTLAERGDAGMIHRIQRFTTQRIPSATIEGLEPK 379
>gi|404497891|ref|YP_006721997.1| ATP-dependent RNA helicase RhlE [Geobacter metallireducens GS-15]
gi|418066972|ref|ZP_12704326.1| DEAD/DEAH box helicase domain protein [Geobacter metallireducens
RCH3]
gi|78195491|gb|ABB33258.1| ATP-dependent RNA helicase RhlE [Geobacter metallireducens GS-15]
gi|373559543|gb|EHP85836.1| DEAD/DEAH box helicase domain protein [Geobacter metallireducens
RCH3]
Length = 452
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/409 (46%), Positives = 272/409 (66%), Gaps = 35/409 (8%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F + L +LKA+ GYT PT +Q QAIP A+ GRDL+ ++QTG+GKTAAF+LPAL
Sbjct: 1 MTFAELNLLPPILKAVAACGYTDPTPIQAQAIPRALEGRDLLATAQTGTGKTAAFVLPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-----PRMLVLTPTRELALQVTA 115
+ A +PAQ PR+LVLTPTRELA QVT
Sbjct: 61 QRLA-----------------------------RPAQKPGRGPRVLVLTPTRELAQQVTD 91
Query: 116 ATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQI 175
A YG +++ I++ +ILGGMPY Q++LLS ++++ATPGRL+D ++ ++ S L++
Sbjct: 92 AVRSYGKFLR-IRSGAILGGMPYREQLRLLSAPVDLIVATPGRLVDLLDRRSLDLSRLEL 150
Query: 176 LVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNS 235
L+LDEADRMLDMGF +D++++ A+P RQT+LF+AT+D + +A + +P ++V
Sbjct: 151 LILDEADRMLDMGFSDDVDRVAAASPSDRQTLLFTATMDATMARLAGRLLNEPERIEVAG 210
Query: 236 IEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFL 295
+ ++I Q + DD+ HKNRLL +L+ D V +A++F+ATKRDA+ +A L G
Sbjct: 211 TKTTHEHIEQRLHVADDLSHKNRLLQHLITDGDVRKAIIFSATKRDAENMAIELRSQGHS 270
Query: 296 AAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVH 355
AA LHGD+ Q+ARNRT+ +++GRI++LVATDVAARG+DV I+HV N+DLPKF EDYVH
Sbjct: 271 AAALHGDMPQSARNRTIAAMKQGRIRLLVATDVAARGLDVSGISHVINFDLPKFAEDYVH 330
Query: 356 RIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
RIGRTGRAG +G A+S + E + +IER+ Q +P I G EP++
Sbjct: 331 RIGRTGRAGASGIAISFASLNEVSYLARIERYIGQTLPEHQIPGLEPRR 379
>gi|153874150|ref|ZP_02002476.1| ATP-dependent RNA helicase RhlE [Beggiatoa sp. PS]
gi|152069386|gb|EDN67524.1| ATP-dependent RNA helicase RhlE [Beggiatoa sp. PS]
Length = 441
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 198/412 (48%), Positives = 277/412 (67%), Gaps = 26/412 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+ LH ++LKA+ + GYT PTGVQ +AIP ++G DLI S+ TG+GKTAAF+LPAL
Sbjct: 1 MSFEEFNLHPIILKAIQQCGYTTPTGVQAEAIPKVLNGSDLIASANTGTGKTAAFVLPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + +++ V K+N +P +LVLTPTRELA Q++ A Y
Sbjct: 61 QRLTNKEHR--VKKQN-------------------GKPSVLVLTPTRELANQISQAIRNY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ + +++GGMPY Q++ LSR +I++ATPGRL+D + I+ S + +LVLDE
Sbjct: 100 GKNLRFF-STNLVGGMPYEPQLRALSRPIDIVVATPGRLLDLVERRNIDLSGVNMLVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF++++ KI TP TRQT+LFSAT D + ++A + KDP ++V S + Q
Sbjct: 159 ADRMLDMGFVDEVNKIASFTPETRQTLLFSATWDNTMASLARRLLKDPERIQVES-QVTQ 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NI Q + DD HKNRLL ++L ++ + QA++F+ATK+ A+ +A L G AA LH
Sbjct: 218 NNIEQRLHIADDFKHKNRLLLHVLDNEELTQAIIFSATKQGANDLAQELKAQGHSAAALH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+ Q ARNRTL NLRRG++++LVATDVAARGIDV +THV N+DLP+F EDYVHRIGRT
Sbjct: 278 GDMKQGARNRTLMNLRRGKLRLLVATDVAARGIDVTTVTHVINFDLPRFAEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSR 412
GRAG G A+S + ++ +IER+T Q+P +I G EP R+ Y R
Sbjct: 338 GRAGAAGTAISFALPDDARHLARIERYTGIQVPQVIIPGLEP---TRSLYQR 386
>gi|406939141|gb|EKD72227.1| hypothetical protein ACD_45C00735G0003 [uncultured bacterium]
Length = 427
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 186/405 (45%), Positives = 271/405 (66%), Gaps = 27/405 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F L + KAL GY KPT +Q ++IP + G+D++ S+QTG+GKTA+F+LPAL
Sbjct: 1 MTFAQFNLSPPIAKALDACGYKKPTPIQAKSIPEILLGKDIVASAQTGTGKTASFVLPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ ++SK ++PR+L+LTPTRELA Q+T A +Y
Sbjct: 61 HRLSTSKAT--------------------------SKPRILILTPTRELANQITTAIGKY 94
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G +++ + S++GGMPY +Q++ LS + ++++ATPGRL+DHM+ +++ S +++L+LDE
Sbjct: 95 GKFLR-VNIASLVGGMPYRQQLRALSHSVDMIIATPGRLLDHMSHRRLDLSAIEMLILDE 153
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+D+ +I ATP RQT+LFSAT+D + + + +P+ + + +
Sbjct: 154 ADRMLDMGFIDDVREIAKATPSNRQTLLFSATVDNRLSQVIRQLLNNPIKIDFSHEQLTP 213
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ ITQ + D+ HK RLL + + DK + +A++F+ATK +AD +A L G+ AA LH
Sbjct: 214 EKITQELYMADNPQHKKRLLMHFVTDKNIFKAIIFSATKINADKLAGELTDQGYAAAALH 273
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GDL QN RNRT+E +RR +I+ LVATDVAARGIDV ITHV NYDLPKF EDYVHRIGRT
Sbjct: 274 GDLKQNVRNRTMERMRRNKIQFLVATDVAARGIDVQDITHVINYDLPKFSEDYVHRIGRT 333
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
GRAG+ G A+SL ++ +I++IER Q + ++I G EP K+
Sbjct: 334 GRAGKTGIAISLATSSDIRHIQRIERLMNQVLTRKIITGLEPSKQ 378
>gi|451823382|ref|YP_007459656.1| superfamily II DNA and RNA helicase [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
gi|451776182|gb|AGF47223.1| superfamily II DNA and RNA helicase [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
Length = 480
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 202/454 (44%), Positives = 285/454 (62%), Gaps = 26/454 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+++G++ ++ A+ G+ PT VQ IP AI +DL+VS+QTGSGKTAAF+LP L
Sbjct: 1 MSFENLGINPNIISAIKATGFESPTPVQNATIPKAILRQDLVVSAQTGSGKTAAFILPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
N + M K+ N ++L+LTPTRELA+Q+T A Y
Sbjct: 61 -------NHLSQMPKSSN-----------------TAIQVLILTPTRELAMQITKAASSY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +I+GGMPY Q++ LS+ +IL+ATPGRLID M SG++N + LVLDE
Sbjct: 97 GSNFHWLRMATIVGGMPYQSQIKALSKRIDILVATPGRLIDQMQSGRVNLKSVHTLVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI+ IV P RQTMLFSATLD + N+A+ + +P + + + ++
Sbjct: 157 ADRMLDMGFIEDIQNIVSHLPKERQTMLFSATLDNSIMNLAKQMMNNPERISLTNNKQSH 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NI Q +++VDD HK R+L +LL + QAVVFT+TKR AD +A+ L GF A LH
Sbjct: 217 SNIEQKLIYVDDNHHKIRVLQHLLNKNDLDQAVVFTSTKRGADELANHLADIGFAVAALH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD++Q R RTL L++ ++KIL+ATDVAARGID+ I+H N+DLP EDY+HRIGRT
Sbjct: 277 GDMNQRQRTRTLAQLQKKQLKILIATDVAARGIDIQGISHAINFDLPMQAEDYIHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPK--KRIRTYYSRYRFNNN 418
GRAGRNG A++L +H+E+ I++IE + + I I +I G E K K ++ F N
Sbjct: 337 GRAGRNGEALTLASHSEKHKIRRIEHYIGKNINITIIEGLESKAPKGPSNTLNKRSFANR 396
Query: 419 NWKTHNINKSNITKRFYRQIKKTSISASSKNSIN 452
K N +N T + R ++ S ++ S+N
Sbjct: 397 KPKIDYTNNTNSTNKKPRTSQENSYKTQTRTSLN 430
>gi|118578871|ref|YP_900121.1| DEAD/DEAH box helicase [Pelobacter propionicus DSM 2379]
gi|118501581|gb|ABK98063.1| DEAD/DEAH box helicase domain protein [Pelobacter propionicus DSM
2379]
Length = 454
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 191/407 (46%), Positives = 271/407 (66%), Gaps = 25/407 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+ + L +LKA+ GYT PT +Q+QAIP ++G DLI ++QTG+GKTAAF+LPAL
Sbjct: 1 MTFEELNLTPAILKAVTACGYTTPTPIQQQAIPVVMTGSDLIATAQTGTGKTAAFVLPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ S+ + +P PR+LVLTPTRELA Q A Y
Sbjct: 61 QRL-STPSSVPGKG-----------------------PRVLVLTPTRELAGQCIDAARSY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G +++ SILGGMPY Q++LLS ++++ATPGRL+DH+ G I + L++LVLDE
Sbjct: 97 G-RGARLRCGSILGGMPYREQLRLLSAPVDLIVATPGRLLDHLERGSIALNRLEMLVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF D+EKIV A P RQT++F+AT+ V +AE + ++P +++
Sbjct: 156 ADRMLDMGFSEDMEKIVSAAPQERQTLMFTATMGTTVLKLAEKMLRNPQRIELAVRTSSH 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q + D++ HK LL +L+ DK + +A++F+ATKRDAD +A L+ G AAPLH
Sbjct: 216 ELIEQRLHVADNLGHKKELLRHLVSDKGLTRAIIFSATKRDADELARELSREGHPAAPLH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD++Q ARN+T+E +R+G I++LVATDVAARG+DV I+HV N+DLP+F EDYVHRIGRT
Sbjct: 276 GDMNQFARNKTIERMRKGAIRLLVATDVAARGLDVNGISHVINFDLPRFAEDYVHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIR 407
GRAG +G A+S V+ +E +++IERF +++P + I G P +R
Sbjct: 336 GRAGASGIAISFVSPSELSYLERIERFIGKKLPEQNIEGLAPLSVLR 382
>gi|397662367|ref|YP_006503067.1| ATP-dependent rna helicase [Taylorella equigenitalis ATCC 35865]
gi|394350546|gb|AFN36460.1| ATP-dependent rna helicase [Taylorella equigenitalis ATCC 35865]
Length = 581
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/405 (47%), Positives = 273/405 (67%), Gaps = 11/405 (2%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F +G+ + +LK+L ++ + PT VQ ++IP A+ G+DLIVS+QTGSGKTAAFMLP++ +
Sbjct: 6 FADLGIEQTLLKSLERIDFRNPTEVQVKSIPLALKGKDLIVSAQTGSGKTAAFMLPSIQQ 65
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP-----RMLVLTPTRELALQVTAAT 117
P ++ ++++ K+R R A P ++LVLTPTRELA+QV+ AT
Sbjct: 66 LLHELETRPAPEQIASKSS------KQRKRRSEANPPKYGVQILVLTPTRELAMQVSDAT 119
Query: 118 ERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
+ + K + +++GGM Y Q+ LSR EI++ATPGRL+DH+ +G++N +L+IL+
Sbjct: 120 KEFIYGFKGVHIATLVGGMAYGPQINSLSREVEIVVATPGRLLDHIKAGRVNLRNLKILI 179
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
LDEADRMLDMGFI+DI +V TP RQT+LFSAT +G V +A ++ DP + V+
Sbjct: 180 LDEADRMLDMGFIHDINNVVAETPDDRQTLLFSATFEGNVVKLARDMLTDPERIIVSDHT 239
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
K +NI Q + + D + HK +LL+ LL+D Q +VFT TKR A +A RL A+
Sbjct: 240 DKHQNIEQYLFYADTVGHKFKLLEALLKDPEAEQVIVFTKTKRGATDLAGRLKDIDIKAS 299
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
LHGD++Q RNRT++ L +G+IK+LVATDVAARGID+ I+HV NYDLP EDYVHRI
Sbjct: 300 ELHGDMNQGQRNRTIQGLHKGKIKVLVATDVAARGIDIQGISHVINYDLPMQAEDYVHRI 359
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRTGRAGR+G A +L +ER ++ IE + K++ I VI G EP
Sbjct: 360 GRTGRAGRDGRAYTLALLSERRGVRFIENYIKREFDIAVIPGLEP 404
>gi|39995599|ref|NP_951550.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA]
gi|409911056|ref|YP_006889521.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens KN400]
gi|39982362|gb|AAR33823.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA]
gi|298504618|gb|ADI83341.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens KN400]
Length = 450
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/407 (46%), Positives = 271/407 (66%), Gaps = 25/407 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F + L +LKA+ GYT+PT VQ A+P A+ DL+ ++QTG+GKTAAF+LPAL
Sbjct: 1 MTFAELKLAPHILKAVAACGYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ +S Q + PR+LVLTPTRELA QVT A Y
Sbjct: 61 QRLSSPP-----------QGPGR-------------GPRVLVLTPTRELAQQVTDAVRTY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G +M+ +++ +ILGGMPY Q++LLS + ++ATPGRL+D ++ ++ S L++LVLDE
Sbjct: 97 GAFMR-VRSGAILGGMPYHAQLRLLSAPVDFIVATPGRLVDLLDRRSLDLSRLELLVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF +D+++I A+P TRQT+LF+AT+D + +A + ++P + + +
Sbjct: 156 ADRMLDMGFSDDVDRIAAASPATRQTLLFTATMDSAMARLAGRLLREPERIDIAGTKTTH 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
++I Q + DD+ HKNRLL +L+ D+ + +A++F+ATKRDA+ +A L G AA LH
Sbjct: 216 EHIEQRLHVADDLHHKNRLLRHLITDESLRRAIIFSATKRDAENLALELKAQGHSAAALH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+ QNARNRT+ +++GRI++LVATDVAARG+DV I+HV N+DLPKF EDYVHRIGRT
Sbjct: 276 GDMPQNARNRTIAAMKQGRIRLLVATDVAARGLDVTGISHVINFDLPKFAEDYVHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIR 407
GRAG +G A+S + E + +IER+ Q +P I G EP + +R
Sbjct: 336 GRAGASGIAISFASLNEVNYLARIERYIGQTLPEHHIPGLEPSRPLR 382
>gi|399114783|emb|CCG17579.1| ATP-dependent rna helicase [Taylorella equigenitalis 14/56]
Length = 581
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/405 (47%), Positives = 273/405 (67%), Gaps = 11/405 (2%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F +G+ + +LK+L ++ + PT VQ ++IP A+ G+DLIVS+QTGSGKTAAFMLP++ +
Sbjct: 6 FADLGIEQTLLKSLERIDFRNPTEVQVKSIPLALKGKDLIVSAQTGSGKTAAFMLPSIQQ 65
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP-----RMLVLTPTRELALQVTAAT 117
P ++ ++++ K+R R A P ++LVLTPTRELA+QV+ AT
Sbjct: 66 LLHELETRPAPEQIASKSS------KQRKRRSEANPPKYGVQILVLTPTRELAMQVSDAT 119
Query: 118 ERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
+ + K + +++GGM Y Q+ LSR EI++ATPGRL+DH+ +G++N +L+IL+
Sbjct: 120 KEFIYGFKGVHIATLVGGMAYGPQINSLSREVEIVVATPGRLLDHIKAGRVNLRNLKILI 179
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
LDEADRMLDMGFI+DI +V TP RQT+LFSAT +G V +A ++ DP + V+
Sbjct: 180 LDEADRMLDMGFIHDINNVVAETPDDRQTLLFSATFEGNVVKLARDMLTDPERIIVSDHT 239
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
K +NI Q + + D + HK +LL+ LL+D Q +VFT TKR A +A RL A+
Sbjct: 240 DKHQNIEQYLFYADTVGHKFKLLEALLKDPEAEQVIVFTKTKRGATDLAGRLKDIDIKAS 299
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
LHGD++Q RNRT++ L +G+IK+LVATDVAARGID+ I+HV NYDLP EDYVHRI
Sbjct: 300 ELHGDMNQGQRNRTIQGLHKGKIKVLVATDVAARGIDIQGISHVINYDLPMQAEDYVHRI 359
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRTGRAGR+G A +L +ER ++ IE + K++ I VI G EP
Sbjct: 360 GRTGRAGRDGRAYTLALLSERRGVRFIENYIKREFDIAVIPGLEP 404
>gi|399116968|emb|CCG19780.1| ATP-dependent rna helicase [Taylorella asinigenitalis 14/45]
Length = 562
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/407 (47%), Positives = 276/407 (67%), Gaps = 12/407 (2%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
NF +G+ +++LK+L ++ + PT VQ ++IP A+ G+DLIVS+QTGSGKTAAFMLP++
Sbjct: 5 NFADLGIEQILLKSLERIDFRNPTEVQVKSIPLALEGKDLIVSAQTGSGKTAAFMLPSIQ 64
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKP-AQP-----RMLVLTPTRELALQVTA 115
+ P ++ +++ R + KP A P ++LVLTPTRELA+QV
Sbjct: 65 RLLHELETRPQTEEISKAKSSR------RKKGKPTANPPKYGVQILVLTPTRELAMQVAD 118
Query: 116 ATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQI 175
AT+ + K + +++GGM Y Q+ LSR EI++ATPGRL+DH+ +G++ +L++
Sbjct: 119 ATKEFIYGFKGVHIATLVGGMAYGPQINSLSREVEIIVATPGRLLDHIKAGRVKLHNLKV 178
Query: 176 LVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNS 235
L+LDEADRMLDMGFI+DI+ +V TP +QT+LFSAT +G +A+ + K P + V+
Sbjct: 179 LILDEADRMLDMGFIHDIKNVVAETPDEKQTLLFSATFEGNTVKLAKEMLKSPERIVVSD 238
Query: 236 IEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFL 295
++K +NI Q + + D + HK +LL+ LLRD V Q +VFT TKR A +A RL F
Sbjct: 239 HKEKHQNIEQFLFYADTVGHKFKLLEALLRDPDVDQTIVFTKTKRGACDLAKRLKDLDFK 298
Query: 296 AAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVH 355
A LHGD++Q RNRT++ L++GRIK+LVATDVAARGID+ I+HV NYDLP EDYVH
Sbjct: 299 AGELHGDMNQGQRNRTIQALQKGRIKVLVATDVAARGIDIQGISHVVNYDLPMQAEDYVH 358
Query: 356 RIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
RIGRTGRAGR+G A +L +ER ++ IE + +++ I VI G EP
Sbjct: 359 RIGRTGRAGRDGRAYTLALLSERRAVRFIENYISRELDIAVIPGLEP 405
>gi|333367483|ref|ZP_08459744.1| ATP-dependent RNA helicase RhlE [Psychrobacter sp. 1501(2011)]
gi|332978670|gb|EGK15368.1| ATP-dependent RNA helicase RhlE [Psychrobacter sp. 1501(2011)]
Length = 519
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 191/410 (46%), Positives = 266/410 (64%), Gaps = 28/410 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L +L AL GY PT +Q Q+IP A++GRDL++S+QTGSGKTAAF+LP L
Sbjct: 40 ITFVDLDLAPELLSALTSSGYEHPTPIQAQSIPPALAGRDLLLSAQTGSGKTAAFVLPML 99
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
K K N ++T ++LTPTRELA QV+ + +Y
Sbjct: 100 DKIIRDK-----------ATNKVVHT--------------VILTPTRELANQVSDSVRQY 134
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
+ I ++ ++GG PY Q++ L++ +I++ATPGR IDHMNSG+I+ S L IL+LDE
Sbjct: 135 SSKTRNIFSVPLVGGAPYGGQIRALNKGVQIIIATPGRFIDHMNSGRIDLSELDILILDE 194
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF +DIEK++ A P +RQT++ SAT DG VG +A + T +P + I+ +
Sbjct: 195 ADRMLDMGFADDIEKVMSAAPKSRQTIMCSATWDGPVGKIAASFTNNPERI---DIKAET 251
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
K+I +S+ + DD HKNR+LD+LL K V QA++F ATKR + +A L G A+ LH
Sbjct: 252 KHIDESVYYADDFNHKNRILDHLLTQKDVNQAIIFAATKRSCETLAKSLKEQGHKASFLH 311
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GDL Q R R + +++ G+I ILVATDVAARGIDV ITHVFNYDLP+ EDYVHRIGR+
Sbjct: 312 GDLPQAKRTRIINDVKAGKISILVATDVAARGIDVSGITHVFNYDLPRQTEDYVHRIGRS 371
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYY 410
GRAGR G A+++ + +R + I R+ K+ + +E I G EPKK + +
Sbjct: 372 GRAGRTGIAINICSIDDRPQLDAINRYLKRTMSVEEIEGMEPKKNTKDMH 421
>gi|288959250|ref|YP_003449591.1| ATP-dependent RNA helicase [Azospirillum sp. B510]
gi|288911558|dbj|BAI73047.1| ATP-dependent RNA helicase [Azospirillum sp. B510]
Length = 456
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 200/408 (49%), Positives = 273/408 (66%), Gaps = 26/408 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GLH LVLKAL YT PT VQ AIP A+ GRD++ +++TG+GKTAAFMLPAL
Sbjct: 1 MSFSELGLHPLVLKALEAFEYTTPTPVQLAAIPPALQGRDILATAETGTGKTAAFMLPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ A ++P LN A PR+LVL PTRELA QVT A +Y
Sbjct: 61 TRTA----ELP-----LNGA---------------ATPRVLVLAPTRELAKQVTDAARKY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
+MK + + ++GGMPY Q++LLSR ++L+ATPGRL+DH+ +I +++L+LDE
Sbjct: 97 AKFMK-LNIVDVVGGMPYREQLRLLSRPVDVLVATPGRLLDHVARRRIALDEVEVLILDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF++D+E I P TRQT+LF+ATLD + +A N+ ++P + V S +
Sbjct: 156 ADRMLDMGFLDDVETIAKCCPPTRQTLLFTATLDRRMAQLAGNLLRNPERVAVES-QATS 214
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
N+ Q + DD+ HK RLL + + VG+A++F ATKRDAD +A+ L+ +G AA LH
Sbjct: 215 VNVEQRLHHADDMDHKRRLLQHFAAQEEVGKAIIFAATKRDADTLAEELSAAGHAAAALH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+ Q RNRTL+ LR G++++LVATDVAARGIDV ITHV N+DLP+ EDYVHRIGRT
Sbjct: 275 GDMDQTKRNRTLQRLRTGQVRLLVATDVAARGIDVRDITHVINFDLPRSAEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
GRAG +G A+S A+R + +IER+TK + + V+ G EP + T
Sbjct: 335 GRAGASGVAISFAARADRETLVRIERYTKATLEVHVVPGLEPTRPFTT 382
>gi|319778596|ref|YP_004129509.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
gi|317108620|gb|ADU91366.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
Length = 581
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 192/405 (47%), Positives = 272/405 (67%), Gaps = 11/405 (2%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F +G+ + +LK+L ++ + PT VQ ++IP A+ G+DLIVS+QTGSGKTAAFMLP++ +
Sbjct: 6 FADLGIEQTLLKSLERIDFRNPTEVQVKSIPLALKGKDLIVSAQTGSGKTAAFMLPSIQQ 65
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP-----RMLVLTPTRELALQVTAAT 117
P ++ ++++ K+R R A P ++LVLTPTRELA+QV+ AT
Sbjct: 66 LLHELETRPAPEQIASKSS------KQRKRRSEANPPKYGVQILVLTPTRELAMQVSDAT 119
Query: 118 ERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
+ + K + +++GGM Y Q+ LSR EI++ATPGRL+DH+ +G++N +L+IL+
Sbjct: 120 KEFIYGFKGVHIATLVGGMAYGPQINSLSREVEIVVATPGRLLDHIKAGRVNLRNLKILI 179
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
LDEADRMLDMGFI+DI +V TP RQT+LFSAT +G V +A ++ DP + V+
Sbjct: 180 LDEADRMLDMGFIHDINNVVAETPDDRQTLLFSATFEGNVVKLARDMLTDPERIIVSDHT 239
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
K +NI Q + + D + HK +LL+ LL+D Q +VFT TKR A +A RL A+
Sbjct: 240 DKHQNIEQYLFYADTVGHKFKLLEALLKDPEAEQVIVFTKTKRGATDLAGRLKDIDIKAS 299
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
LHGD++Q RNRT++ L +G+IK+LVATDVAARGID+ I+HV NYDLP EDYVHRI
Sbjct: 300 ELHGDMNQGQRNRTIQGLHKGKIKVLVATDVAARGIDIQGISHVINYDLPMQAEDYVHRI 359
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRTGRAGR+G A +L +ER ++ IE + ++ I VI G EP
Sbjct: 360 GRTGRAGRDGRAYTLALLSERRGVRFIENYINREFDIAVIPGLEP 404
>gi|348590699|ref|YP_004875161.1| ATP-dependent RNA helicase [Taylorella asinigenitalis MCE3]
gi|347974603|gb|AEP37138.1| ATP-dependent RNA helicase [Taylorella asinigenitalis MCE3]
Length = 562
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/401 (47%), Positives = 271/401 (67%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
NF +G+ +++LK+L ++ + PT VQ ++IP A+ G+DLIVS+QTGSGKTAAFMLP++
Sbjct: 5 NFADLGIEQILLKSLERIDFRNPTEVQVKSIPLALEGKDLIVSAQTGSGKTAAFMLPSIQ 64
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ P ++ +++ K ++LVLTPTRELA+QV AT+ +
Sbjct: 65 RLLHELETRPQTEEISKAKSSRRKRGKSTANPPKYGVQILVLTPTRELAMQVADATKEFI 124
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
K + +++GGM Y Q+ LSR EI++ATPGRL+DH+ +G++ +L++L+LDEA
Sbjct: 125 YGFKGVHIATLVGGMAYGPQINSLSREVEIIVATPGRLLDHIKAGRVKLHNLKVLILDEA 184
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGFI+DI+ +V TP +QT+LFSAT +G +A+ + K P + V+ ++K +
Sbjct: 185 DRMLDMGFIHDIKNVVAETPDEKQTLLFSATFEGNTVKLAKEMLKSPERIVVSDHKEKHQ 244
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
NI Q + + D + HK +LL+ LLRD V Q +VFT TKR A +A RL F A LHG
Sbjct: 245 NIEQFLFYADTVGHKFKLLEALLRDPDVDQTIVFTKTKRGACDLAKRLKDLDFKAGELHG 304
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
D++Q RNRT++ L++GRIK+LVATDVAARGID+ I+HV NYDLP EDYVHRIGRTG
Sbjct: 305 DMNQGQRNRTIQALQKGRIKVLVATDVAARGIDIQGISHVVNYDLPMQAEDYVHRIGRTG 364
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
RAGR+G A +L +ER ++ IE + +++ I VI G EP
Sbjct: 365 RAGRDGRAYTLALLSERRAVRFIENYISRELDIAVIPGLEP 405
>gi|254671737|emb|CBA09550.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
alpha153]
Length = 399
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 192/380 (50%), Positives = 248/380 (65%), Gaps = 28/380 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L + +L A+ GY PT +Q QAIP+A+ GRD++ S+QTGSGKTAAF+LP L
Sbjct: 3 IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPSALEGRDIMASAQTGSGKTAAFLLPTL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-PRMLVLTPTRELALQVTAATER 119
K K P + PR LVLTPTRELA QV
Sbjct: 63 QKLTKRSEK-------------------------PGKGPRALVLTPTRELAAQVEKNALA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y M+ + +SI+GG + Q + LS+ ++++ATPGRL+D M SGK++F L++L+LD
Sbjct: 98 YAKNMRWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFERLEVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DIE IV+ATP RQT+LFSAT DG VG +A +TKDP I++V ++
Sbjct: 158 EADRMLDMGFIDDIETIVEATPSDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVD-D 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
Q I + +L+ DD+ HKNRLLD++LRD + Q V+FT+TK ++IAD L GF A L
Sbjct: 217 QGKIEEQLLYCDDMRHKNRLLDHILRDADIDQCVIFTSTKAMTEVIADELYEKGFAANCL 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD+ Q RNRTL +LR+GR KILVATDVAARGIDVP ITHV NYDLPK EDYVHRIG
Sbjct: 277 HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIG- 335
Query: 360 TGRAGRNGFAVSLVNHAERM 379
R+GR +ER+
Sbjct: 336 PYRSGRTHGYCDYFCRSERI 355
>gi|416243311|ref|ZP_11633832.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis BC7]
gi|326569194|gb|EGE19255.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis BC7]
Length = 581
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/402 (46%), Positives = 272/402 (67%), Gaps = 28/402 (6%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F +GL++ +LKAL K GYT PT +Q +AIP A++GRDL++S+QTGSGKTAAF+LP L K
Sbjct: 20 FSDLGLNKPILKALTKSGYTTPTPIQAKAIPHALNGRDLLLSAQTGSGKTAAFVLPVLDK 79
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
+ + P ++K++ + L+LTPTRELALQV + RYG
Sbjct: 80 MS----RKPTIEKHV---------------------QALILTPTRELALQVQDSVRRYGD 114
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
M+ + ++ ++GG PY Q++ L + ++++ATPGRLIDHM G+++ S L +L+LDEAD
Sbjct: 115 GMRNMFSVPLVGGAPYGGQLRALKKGVQVIIATPGRLIDHMREGRVDLSKLDMLILDEAD 174
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLDMGF +DI++I+ TP TRQT++ SAT DG VG +AE+ T +P + SI+ + +
Sbjct: 175 RMLDMGFADDIKEILQNTPQTRQTVMSSATWDGAVGKIAESFTVNPEKV---SIKVESAH 231
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
I +S+ + DD HKN +L +L + ++ QAV+F ATK + +A +L +GF A LHGD
Sbjct: 232 IDESVYYCDDFNHKNNILLQVLNNPKIKQAVIFAATKMSTEKLAAQLVEAGFKARYLHGD 291
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
L Q RNR + +++ G+ +LVATDVAARGID+ AI+HV NYDLP+ EDYVHRIGR GR
Sbjct: 292 LPQGKRNRIVSDMKSGKCDVLVATDVAARGIDISAISHVINYDLPRQVEDYVHRIGRCGR 351
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
AGR G AV+L + + ++ I R+ K+Q+ + I G EP++
Sbjct: 352 AGRTGVAVNLCSIDDNRQLEHINRYLKRQMSVSTIEGLEPRR 393
>gi|365922328|ref|ZP_09446556.1| DEAD/DEAH box helicase [Cardiobacterium valvarum F0432]
gi|364574541|gb|EHM51994.1| DEAD/DEAH box helicase [Cardiobacterium valvarum F0432]
Length = 441
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 192/402 (47%), Positives = 265/402 (65%), Gaps = 28/402 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F + L E +L A GYT PT +Q QAIP AI+GRDL +S+QTGSGKTAAF+LP L
Sbjct: 3 TFTDLNLPEALLNATAASGYTTPTPIQAQAIPLAIAGRDLQLSAQTGSGKTAAFVLPILT 62
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ +S+ + +PR L+LTPTRELALQV +YG
Sbjct: 63 RLITSEQR-------------------------GKKPRALILTPTRELALQVQDQVRKYG 97
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+K + ++ ++GG PY Q++ L + +I++ATPGRL+DH+ +I+ S L +LVLDEA
Sbjct: 98 RELKWLFSVPLVGGAPYGGQIRALKKGVQIIVATPGRLLDHLRDERIDTSALDMLVLDEA 157
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGF +D+ I+DA P RQT++ SAT DG VG +A T++P + SI+ +
Sbjct: 158 DRMLDMGFADDLGAIIDALPENRQTIMSSATWDGAVGKIAARYTREPERI---SIKVESA 214
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
+I + + F DD HKNR+L++L+ D +GQ ++F ATKR ++ IAD L +G A LHG
Sbjct: 215 HIEEKVYFCDDQGHKNRILEHLVADPDMGQTIIFAATKRSSEEIADSLRDNGHRARFLHG 274
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
DL Q RNR +E+LR+G+ ILVATDVAARGID+PAI+HV NYDLP+ EDYVHRIGR+G
Sbjct: 275 DLPQVKRNRIVEDLRKGKCDILVATDVAARGIDIPAISHVINYDLPRQVEDYVHRIGRSG 334
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPK 403
RAGR+G A++L + A+R + I R+ +++I I G EPK
Sbjct: 335 RAGRSGVAINLCSLADRSQLSAITRYLERKIDEHRIEGMEPK 376
>gi|374292881|ref|YP_005039916.1| ATP-dependent RNA helicase [Azospirillum lipoferum 4B]
gi|357424820|emb|CBS87699.1| ATP-dependent RNA helicase [Azospirillum lipoferum 4B]
Length = 456
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 199/408 (48%), Positives = 271/408 (66%), Gaps = 26/408 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F +GLH LVLKAL YT PT VQ AIP A+ GRD++ +++TG+GKTAAFMLP L
Sbjct: 1 MTFSELGLHPLVLKALEAFEYTTPTPVQLAAIPPALQGRDILATAETGTGKTAAFMLPTL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ A ++P LN A PR+LVL PTRELA QVT A +Y
Sbjct: 61 TRTA----ELP-----LNGA---------------ATPRVLVLAPTRELAKQVTDAARKY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
+MK + + ++GGMPY Q++LLSR ++L+ TPGRL+DH+ +I +++L+LDE
Sbjct: 97 AKFMK-LNIVDVVGGMPYREQLRLLSRPVDVLVCTPGRLLDHVARRRIALDEVEVLILDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF++D+E I P TRQT+LF+ATLD + +A N+ ++P + V S +
Sbjct: 156 ADRMLDMGFLDDVETIAKCCPPTRQTLLFTATLDRRMAQLAGNLLRNPERVAVES-QATA 214
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
N+ Q + DD+ HK RLL + + VG+A++F ATKRDAD +A+ L+ +G AA LH
Sbjct: 215 INVEQRLHHADDLDHKRRLLQHFAAQEEVGKAIIFAATKRDADTLAEELSAAGHAAAALH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+ Q RNRTL+ LR G++++LVATDVAARGIDV ITHV N+DLP+ EDYVHRIGRT
Sbjct: 275 GDMDQTKRNRTLQRLRTGQVRLLVATDVAARGIDVRDITHVINFDLPRSAEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
GRAG +G AVS + A+R + +IER+TK + + V+ G EP + T
Sbjct: 335 GRAGASGIAVSFASRADRETLVRIERYTKATLEVHVVPGLEPTRPFTT 382
>gi|416156217|ref|ZP_11604349.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis 101P30B1]
gi|416216424|ref|ZP_11623748.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis 7169]
gi|416220842|ref|ZP_11625651.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis 103P14B1]
gi|416228903|ref|ZP_11627835.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis 46P47B1]
gi|416237806|ref|ZP_11631161.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis BC1]
gi|416245780|ref|ZP_11634675.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis BC8]
gi|416249012|ref|ZP_11636346.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis CO72]
gi|326561884|gb|EGE12219.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis 7169]
gi|326563318|gb|EGE13585.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis 46P47B1]
gi|326565972|gb|EGE16133.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis 103P14B1]
gi|326568894|gb|EGE18963.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis BC1]
gi|326571867|gb|EGE21872.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis BC8]
gi|326575379|gb|EGE25304.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis 101P30B1]
gi|326576534|gb|EGE26442.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis CO72]
Length = 581
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/402 (46%), Positives = 272/402 (67%), Gaps = 28/402 (6%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F +GL++ +LKAL K GYT PT +Q +AIP A++GRDL++S+QTGSGKTAAF+LP L K
Sbjct: 20 FSDLGLNKPILKALTKSGYTTPTPIQAKAIPHALNGRDLLLSAQTGSGKTAAFVLPVLDK 79
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
+ + P ++K++ + L+LTPTRELALQV + RYG
Sbjct: 80 MS----RKPTIEKHV---------------------QALILTPTRELALQVQDSVRRYGD 114
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
M+ + ++ ++GG PY Q++ L + ++++ATPGRLIDHM G+++ S L +L+LDEAD
Sbjct: 115 GMRNMFSVPLVGGAPYGGQLRALKKGVQVIIATPGRLIDHMREGRVDLSKLDMLILDEAD 174
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLDMGF +DI++I+ TP TRQT++ SAT DG VG +AE+ T +P + SI+ + +
Sbjct: 175 RMLDMGFADDIKEILQNTPQTRQTVMSSATWDGAVGKIAESFTVNPEKV---SIKVESAH 231
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
I +S+ + DD HKN +L +L + ++ QAV+F ATK + +A +L +GF A LHGD
Sbjct: 232 IDESVYYCDDFNHKNNILLQVLNNPKIKQAVIFAATKMSTEKLAAQLVEAGFKARYLHGD 291
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
L Q RNR + +++ G+ +LVATDVAARGID+ AI+HV NYDLP+ EDYVHRIGR GR
Sbjct: 292 LPQGKRNRIVSDMKSGKCDVLVATDVAARGIDISAISHVINYDLPRQVEDYVHRIGRCGR 351
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
AGR G AV+L + + ++ I R+ K+Q+ + I G EP++
Sbjct: 352 AGRTGVAVNLCSIDDNRQLEHINRYLKRQMSVSTIEGLEPRR 393
>gi|416253243|ref|ZP_11638266.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis O35E]
gi|326578004|gb|EGE27868.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis O35E]
Length = 581
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/402 (46%), Positives = 272/402 (67%), Gaps = 28/402 (6%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F +GL++ +LKAL K GYT PT +Q +AIP A++GRDL++S+QTGSGKTAAF+LP L K
Sbjct: 20 FSDLGLNKPILKALTKSGYTTPTPIQAKAIPHALNGRDLLLSAQTGSGKTAAFVLPVLDK 79
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
+ + P ++K++ + L+LTPTRELALQV + RYG
Sbjct: 80 MS----RKPTIEKHV---------------------QALILTPTRELALQVQDSVRRYGD 114
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
M+ + ++ ++GG PY Q++ L + ++++ATPGRLIDHM G+++ S L +L+LDEAD
Sbjct: 115 GMRNMFSVPLVGGAPYGGQLRALKKGVQVIIATPGRLIDHMREGRVDLSKLDMLILDEAD 174
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLDMGF +DI++I+ TP TRQT++ SAT DG VG +AE+ T +P + SI+ + +
Sbjct: 175 RMLDMGFADDIKEILQNTPQTRQTVMSSATWDGAVGKIAESFTVNPEKV---SIKVESAH 231
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
I +S+ + DD HKN +L +L + ++ QAV+F ATK + +A +L +GF A LHGD
Sbjct: 232 IDESVYYCDDFNHKNNILLQVLNNPKIKQAVIFAATKMSTEKLAAQLVEAGFKARYLHGD 291
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
L Q RNR + +++ G+ +LVATDVAARGID+ AI+HV NYDLP+ EDYVHRIGR GR
Sbjct: 292 LPQGKRNRIVSDMKSGKCDVLVATDVAARGIDISAISHVINYDLPRQVEDYVHRIGRCGR 351
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
AGR G AV+L + + ++ I R+ K+Q+ + I G EP++
Sbjct: 352 AGRTGVAVNLCSINDNRQLEHINRYLKRQMSVSTIEGLEPRR 393
>gi|296112376|ref|YP_003626314.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis RH4]
gi|295920070|gb|ADG60421.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis BBH18]
Length = 577
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/402 (46%), Positives = 272/402 (67%), Gaps = 28/402 (6%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F +GL++ +LKAL K GYT PT +Q +AIP A++GRDL++S+QTGSGKTAAF+LP L K
Sbjct: 20 FSDLGLNKPILKALTKSGYTTPTPIQAKAIPHALNGRDLLLSAQTGSGKTAAFVLPVLDK 79
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
+ + P ++K++ + L+LTPTRELALQV + RYG
Sbjct: 80 MS----RKPTIEKHV---------------------QALILTPTRELALQVQDSVRRYGD 114
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
M+ + ++ ++GG PY Q++ L + ++++ATPGRLIDHM G+++ S L +L+LDEAD
Sbjct: 115 GMRNMFSVPLVGGAPYGGQLRALKKGVQVIIATPGRLIDHMREGRVDLSKLDMLILDEAD 174
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLDMGF +DI++I+ TP TRQT++ SAT DG VG +AE+ T +P + SI+ + +
Sbjct: 175 RMLDMGFADDIKEILQNTPQTRQTVMSSATWDGAVGKIAESFTVNPEKV---SIKVESAH 231
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
I +S+ + DD HKN +L +L + ++ QAV+F ATK + +A +L +GF A LHGD
Sbjct: 232 IDESVYYCDDFNHKNNILLQVLNNPKIKQAVIFAATKMSTEKLAAQLVEAGFKARYLHGD 291
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
L Q RNR + +++ G+ +LVATDVAARGID+ AI+HV NYDLP+ EDYVHRIGR GR
Sbjct: 292 LPQGKRNRIVSDMKSGKCDLLVATDVAARGIDISAISHVINYDLPRQVEDYVHRIGRCGR 351
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
AGR G AV+L + + ++ I R+ K+Q+ + I G EP++
Sbjct: 352 AGRTGVAVNLCSIDDNRQLEHINRYLKRQMSVSTIEGLEPRR 393
>gi|416236147|ref|ZP_11630513.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis 12P80B1]
gi|326563433|gb|EGE13698.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis 12P80B1]
Length = 581
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/402 (46%), Positives = 271/402 (67%), Gaps = 28/402 (6%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F +GL++ +LKAL K GYT PT +Q +AIP A++GRDL++S+QTGSGKTAAF+LP L K
Sbjct: 20 FSDLGLNKPILKALTKSGYTTPTPIQAKAIPHALNGRDLLLSAQTGSGKTAAFVLPVLDK 79
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
+ + P ++K++ + L+LTPTRELALQV + RYG
Sbjct: 80 MS----RKPTIEKHV---------------------QALILTPTRELALQVQDSVRRYGD 114
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
M+ + ++ ++GG PY Q++ L + ++++ATPGRLIDHM G+++ S L +L+LDEAD
Sbjct: 115 GMRNMFSVPLVGGAPYGGQLRALKKGVQVIIATPGRLIDHMREGRVDLSKLDMLILDEAD 174
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLDMGF +DI++I+ TP TRQT++ SAT DG VG +AE T +P + SI+ + +
Sbjct: 175 RMLDMGFADDIKEILQNTPQTRQTVMSSATWDGAVGKIAERFTVNPEKV---SIKVESAH 231
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
I +S+ + DD HKN +L +L + ++ QAV+F ATK + +A +L +GF A LHGD
Sbjct: 232 IDESVYYCDDFNHKNNILLQVLNNPKIKQAVIFAATKMSTEKLAAQLVEAGFKARYLHGD 291
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
L Q RNR + +++ G+ +LVATDVAARGID+ AI+HV NYDLP+ EDYVHRIGR GR
Sbjct: 292 LPQGKRNRIVSDMKSGKCDVLVATDVAARGIDISAISHVINYDLPRQVEDYVHRIGRCGR 351
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
AGR G AV+L + + ++ I R+ K+Q+ + I G EP++
Sbjct: 352 AGRTGVAVNLCSIDDNRQLEHINRYLKRQMSVSTIEGLEPRR 393
>gi|421779191|ref|ZP_16215685.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis RH4]
gi|407813632|gb|EKF84412.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis RH4]
Length = 581
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/402 (46%), Positives = 271/402 (67%), Gaps = 28/402 (6%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F +GL++ +LKAL K GYT PT +Q +AIP A++GRDL++S+QTGSGKTAAF+LP L K
Sbjct: 20 FSDLGLNKPILKALTKSGYTTPTPIQAKAIPHALNGRDLLLSAQTGSGKTAAFVLPVLDK 79
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
+ + P ++K++ + L+LTPTRELALQV + RYG
Sbjct: 80 MS----RKPTIEKHV---------------------QALILTPTRELALQVQDSVRRYGD 114
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
M + ++ ++GG PY Q++ L + ++++ATPGRLIDHM G+++ S L +L+LDEAD
Sbjct: 115 GMCNMFSVPLVGGAPYGGQLRALKKGVQVIIATPGRLIDHMREGRVDLSKLDMLILDEAD 174
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLDMGF +DI++I+ TP TRQT++ SAT DG VG +AE+ T +P + SI+ + +
Sbjct: 175 RMLDMGFADDIKEILQNTPQTRQTVMSSATWDGAVGKIAESFTVNPEKV---SIKVESAH 231
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
I +S+ + DD HKN +L +L + ++ QAV+F ATK + +A +L +GF A LHGD
Sbjct: 232 IDESVYYCDDFNHKNNILLQVLNNPKIKQAVIFAATKMSTEKLAAQLVEAGFKARYLHGD 291
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
L Q RNR + +++ G+ +LVATDVAARGID+ AI+HV NYDLP+ EDYVHRIGR GR
Sbjct: 292 LPQGKRNRIVSDMKSGKCDVLVATDVAARGIDISAISHVINYDLPRQVEDYVHRIGRCGR 351
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
AGR G AV+L + + ++ I R+ K+Q+ + I G EP++
Sbjct: 352 AGRTGVAVNLCSIDDNRQLEHINRYLKRQMSVSTIEGLEPRR 393
>gi|400287158|ref|ZP_10789190.1| DEAD/DEAH box helicase [Psychrobacter sp. PAMC 21119]
Length = 555
Score = 369 bits (946), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 185/406 (45%), Positives = 270/406 (66%), Gaps = 32/406 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F +G+ + +L AL + GYT PT +Q QAIP A++GRDL++S+QTGSGKTAAF++P L
Sbjct: 40 VTFTDLGIAKPILTALDRSGYTNPTPIQAQAIPFALAGRDLLLSAQTGSGKTAAFVIPVL 99
Query: 61 HKF--ASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATE 118
+ A+S +K+ + L+LTPTRELA QV +
Sbjct: 100 DRLSRATSFDKLT---------------------------KALILTPTRELAQQVHDSVR 132
Query: 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
Y M+ + + ++GG PY Q+ L + ++++ATPGRL+DH+N+G+++ S+L++LVL
Sbjct: 133 TYSKDMRGLFCVPLVGGAPYNGQITALKKGVQVIVATPGRLLDHINAGRVDLSNLEVLVL 192
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF +DI I+ A P RQT++ SAT DG VG +A + TK+P + SI+
Sbjct: 193 DEADRMLDMGFADDISDILRAAPTDRQTIMCSATWDGPVGKIAASFTKNPERV---SIKV 249
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ +I + + + DD HKNRLLD ++ + + Q ++F ATKR + +A +L +G A+
Sbjct: 250 ESAHIEEKVYYCDDFDHKNRLLDKIVCQQDMEQIIIFAATKRSTEKLAKQLQEAGHKASF 309
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
LHGDL Q+ RNR +++LR G+IKILVATDVAARG+D+PAI+HV NYDLP+ EDYVHRIG
Sbjct: 310 LHGDLPQSKRNRIVQDLRNGKIKILVATDVAARGLDIPAISHVINYDLPRQTEDYVHRIG 369
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
R GRAGR G A+SL + +R + I R+ +++ + +I G EPKK
Sbjct: 370 RCGRAGRTGIAISLCSMDDRPQLNAINRYLDRKMEVCIIEGMEPKK 415
>gi|93006205|ref|YP_580642.1| DEAD/DEAH box helicase [Psychrobacter cryohalolentis K5]
gi|92393883|gb|ABE75158.1| DEAD/DEAH box helicase-like protein [Psychrobacter cryohalolentis
K5]
Length = 552
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 185/406 (45%), Positives = 269/406 (66%), Gaps = 32/406 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F +G+ + +L AL + GYT PT +Q QAIP A++GRDL++S+QTGSGKTAAF++P L
Sbjct: 38 VTFTDLGIAKPILTALDRSGYTNPTPIQAQAIPFALAGRDLLLSAQTGSGKTAAFVIPVL 97
Query: 61 HKF--ASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATE 118
+ A+S +K+ + L+LTPTRELA QV +
Sbjct: 98 DRLSRATSFDKLT---------------------------KALILTPTRELAQQVHDSVR 130
Query: 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
Y M+ + + ++GG PY Q+ L + ++++ATPGRL+DH+N+G+++ S L+ILVL
Sbjct: 131 TYSKDMRGLFCVPLVGGAPYNGQITALKKGVQVIVATPGRLLDHINAGRVDLSSLEILVL 190
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF +DI I+ A P RQT++ SAT DG VG +A + TK+P + SI+
Sbjct: 191 DEADRMLDMGFADDISDILRAAPTDRQTIMCSATWDGPVGKIAASFTKNPERV---SIKV 247
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ +I + + + DD HKNRLLD ++ + + Q ++F ATKR + +A +L +G A+
Sbjct: 248 ESAHIEEKVYYCDDFDHKNRLLDKIVCQQDMEQIIIFAATKRSTEKLAKQLQEAGHKASF 307
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
LHGDL Q+ RNR +++LR G++KILVATDVAARG+D+PAI+HV NYDLP+ EDYVHRIG
Sbjct: 308 LHGDLPQSKRNRIVQDLRNGKVKILVATDVAARGLDIPAISHVINYDLPRQTEDYVHRIG 367
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
R GRAGR G A+SL + +R + I R+ +++ + +I G EPKK
Sbjct: 368 RCGRAGRTGIAISLCSMDDRPQLNAINRYLDRKMEVCIIEGMEPKK 413
>gi|337293255|emb|CCB91245.1| ATP-dependent RNA helicase rhlE [Waddlia chondrophila 2032/99]
Length = 355
Score = 367 bits (941), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 187/374 (50%), Positives = 251/374 (67%), Gaps = 24/374 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F ++ LH +LKAL GY PT +Q +AIP A+ G DL S+QTGSGKTAAF+LPAL
Sbjct: 1 MTFDALNLHSDLLKALNAAGYKSPTEIQCKAIPKAVKGFDLRASAQTGSGKTAAFLLPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H ++ K V PR+L+L+PTRELA+Q+ ++Y
Sbjct: 61 HHCVANPRKPTV------------------------GPRVLILSPTRELAMQIATQADKY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
++ ++K++ I GG+PY Q + L R EIL+ATPGRLID++N IN S ++ILVLDE
Sbjct: 97 SKFLNRVKSVCISGGVPYHVQQRKLRRPYEILIATPGRLIDYINQKAINLSAIEILVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI +EKI ATP +RQT+LFSAT+ G V N++ + +P+ + ++S + K
Sbjct: 157 ADRMLDMGFIEPVEKIAAATPSSRQTLLFSATMQGSVLNLSNRLLNEPMDIVIHSEKTKH 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+NITQ + +VD + HKN+LL+++L D V A+VFT+TKR A + L+ G LA LH
Sbjct: 217 ENITQKLHYVDGLQHKNQLLEHILNDDVVKHAIVFTSTKRHASQLVFELHDKGLLAGALH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+ Q R+RT+ LR G+IK+LVATDVAARGIDV ITHV N+DLP+ EDYVHRIGRT
Sbjct: 277 GDMSQRQRSRTIAQLRTGKIKVLVATDVAARGIDVQNITHVINFDLPRNVEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVN 374
GRAG G A+S +
Sbjct: 337 GRAGAAGTALSFAS 350
>gi|148652953|ref|YP_001280046.1| DEAD/DEAH box helicase [Psychrobacter sp. PRwf-1]
gi|148572037|gb|ABQ94096.1| DEAD/DEAH box helicase domain protein [Psychrobacter sp. PRwf-1]
Length = 516
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 189/410 (46%), Positives = 264/410 (64%), Gaps = 28/410 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L +L+AL GY PT +Q +IP A++GRDL++S+QTGSGKTAAF+LP L
Sbjct: 40 VTFVDLELAPELLEALTSSGYKHPTPIQALSIPPALAGRDLLLSAQTGSGKTAAFVLPML 99
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
K K N ++T ++LTPTRELA QV+ + +Y
Sbjct: 100 DKIIRDK-----------ATNKVVHT--------------VILTPTRELANQVSDSVRQY 134
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
+ I ++ ++GG PY Q++ L++ ++++ATPGR IDHMNSG+I+ S L IL+LDE
Sbjct: 135 SSKTRNIFSVPLVGGAPYGGQIRALNKGVQVIIATPGRFIDHMNSGRIDLSELDILILDE 194
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF DIEK++ A P RQT++ SAT DG VG +A + T +P + I+ +
Sbjct: 195 ADRMLDMGFAEDIEKVMKAAPKNRQTIMCSATWDGPVGKIAASFTNNPERI---DIKAET 251
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
K+I +S+ + DD HKNR+LD LL K V QA++F ATKR + +A L G A+ LH
Sbjct: 252 KHIDESVYYADDFNHKNRILDNLLTQKDVNQAIIFAATKRSCETLAKSLKEQGHKASFLH 311
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GDL Q R+R + +++ G+I ILVATDVAARGIDV ITHVFNYDLP+ EDYVHRIGR+
Sbjct: 312 GDLPQAKRSRIINDVKAGKITILVATDVAARGIDVSGITHVFNYDLPRQTEDYVHRIGRS 371
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYY 410
GRAGR G A+++ + +R + I R+ K+ + +E I G EPKK + +
Sbjct: 372 GRAGRTGIAINICSIDDRAQLDAINRYLKRTMSVEEIEGMEPKKNTKDMH 421
>gi|71065641|ref|YP_264368.1| ATP-dependent DEAD/DEAH box RNA-helicase [Psychrobacter arcticus
273-4]
gi|71038626|gb|AAZ18934.1| possible ATP-dependent DEAD/DEAH box RNA-helicase [Psychrobacter
arcticus 273-4]
Length = 567
Score = 363 bits (933), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 185/406 (45%), Positives = 266/406 (65%), Gaps = 32/406 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + + + +L AL + GYT PT +Q +AIP A+ GRDL++S+QTGSGKTAAF++P L
Sbjct: 44 VTFTDLNIAKPILSALERSGYTHPTPIQAEAIPFALQGRDLLLSAQTGSGKTAAFVIPVL 103
Query: 61 HKF--ASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATE 118
+ A+S +K+ + L+LTPTRELA QV +
Sbjct: 104 DRLSRATSFDKLT---------------------------KALILTPTRELAQQVHDSVR 136
Query: 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
Y M+ + + ++GG PY Q+ L + ++++ATPGRL+DH+N+G+++ S L+ILVL
Sbjct: 137 TYSKDMRGLFCVPLVGGAPYNGQITALKKGVQVIVATPGRLLDHINAGRVDLSSLEILVL 196
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF +DI I+ A P+ RQT++ SAT DG VG +A + TK+P + SI+
Sbjct: 197 DEADRMLDMGFADDISDILRAAPIDRQTIMCSATWDGPVGKIAASFTKNPERV---SIKV 253
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ +I + + + DD HKNRLLD ++ K + Q ++F ATKR + +A +L +G A+
Sbjct: 254 ESAHIEEKVYYCDDFDHKNRLLDKIVCHKDMEQIIIFAATKRSTEKLAKQLQEAGHKASF 313
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
LHGDL Q+ RNR +++LR G+ KILVATDVAARG+DVPA++HV NYDLP+ EDYVHRIG
Sbjct: 314 LHGDLPQSKRNRIVQDLRNGKCKILVATDVAARGLDVPALSHVINYDLPRQTEDYVHRIG 373
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
R GRAGR G A+SL + +R + I R+ +++ VI G EPKK
Sbjct: 374 RCGRAGRTGVAISLCSMDDRPQLNAINRYLDRKMEASVIEGMEPKK 419
>gi|392381155|ref|YP_005030352.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Azospirillum brasilense Sp245]
gi|356876120|emb|CCC96873.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Azospirillum brasilense Sp245]
Length = 513
Score = 363 bits (933), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 193/406 (47%), Positives = 270/406 (66%), Gaps = 26/406 (6%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F +G+H LV+KAL Y PT VQ +AIP A+ GRD++ +++TG+GKTAAFMLPAL +
Sbjct: 40 FAGLGVHPLVVKALEAFEYNTPTPVQAEAIPPALEGRDILATAETGTGKTAAFMLPALTR 99
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
E R A PR+LVL PTRELA QVT A +Y
Sbjct: 100 TV------------------------ELPRLGVAAPRVLVLAPTRELAKQVTDAARKYAK 135
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK + ++GGMPY Q++LLSR ++++ATPGRL+DH++ +I+ S +++L+LDEAD
Sbjct: 136 FMK-YNIVDVVGGMPYRDQLRLLSRAVDVMVATPGRLLDHVSRNRIDLSAVEVLILDEAD 194
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLDMGF++D+E I P +RQT+LF+ATLD + +A N+ ++P+ + V S N
Sbjct: 195 RMLDMGFLDDVETIAKCCPDSRQTLLFTATLDRRMAQLAGNLLRNPVRVAVES-ATTSVN 253
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
+ Q + DD+ HK RLL + VG+A++F ATKRDAD +A+ L+ +G AA LHGD
Sbjct: 254 VEQRLHHADDMDHKRRLLKHFADLPEVGKAIIFAATKRDADALAEELSDAGHAAAALHGD 313
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q RNRTL+ LR G++++LVATDVAARGIDV ITHV N+DLP+ EDYVHRIGRTGR
Sbjct: 314 MDQFKRNRTLQRLRTGQVRLLVATDVAARGIDVRDITHVINFDLPRSAEDYVHRIGRTGR 373
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
AG +G A+S A+R + +IER+T ++ I V+ G EP++ +T
Sbjct: 374 AGASGVAISFAARADRDALFRIERYTGTRLDIHVVPGLEPQRPFQT 419
>gi|406979406|gb|EKE01199.1| hypothetical protein ACD_21C00193G0001 [uncultured bacterium]
Length = 368
Score = 363 bits (933), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 182/393 (46%), Positives = 266/393 (67%), Gaps = 28/393 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F + LHE +L+A+ GY KPT +Q +AIP+ +SG+DL+ S+QTG+GKTAA++LP L
Sbjct: 1 MTFTQLQLHEKILQAVKACGYDKPTPIQVKAIPSILSGKDLVASAQTGTGKTAAYVLPCL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ K+ ++PR+L+L PTRELA Q+T +Y
Sbjct: 61 QLLGAHKS---------------------------SKPRVLILAPTRELAGQITKVIAKY 93
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G +MK A S +GG+ Y RQ++ LSR +I++ATPGRL+DHM + +++ S +++L+LDE
Sbjct: 94 GKFMKPNIA-SFVGGVSYDRQLKELSRPIDIVIATPGRLMDHMENRRLDLSRIEMLILDE 152
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI I++IV ATP +RQT+LFSAT D + ++ +++ K+P+ + ++ +
Sbjct: 153 ADRMLDMGFIPAIKRIVKATPKSRQTLLFSATADDKLMSVMKDLLKNPVRINISQDKVDP 212
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
K I Q I D HKN++L LL + + +A++F+ATKR A +A +L +G+ A+P+H
Sbjct: 213 KLIKQEIYMSRDSRHKNQVLAQLLDQQNIFKAIIFSATKRHASKLATQLRDNGYAASPMH 272
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GDL QNARNRTL R G ++ LVATDVAARGIDV ++HV NYDLP+F EDYVHRIGRT
Sbjct: 273 GDLKQNARNRTLAQFRTGEVQFLVATDVAARGIDVSDVSHVINYDLPRFHEDYVHRIGRT 332
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIP 393
GRAG+ G A+S+ H+E ++ IER+ +++P
Sbjct: 333 GRAGKTGVAISIALHSEMKQLQSIERYIGKKLP 365
>gi|406937818|gb|EKD71181.1| hypothetical protein ACD_46C00260G0006 [uncultured bacterium]
Length = 543
Score = 360 bits (925), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 186/395 (47%), Positives = 273/395 (69%), Gaps = 29/395 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F + L++ + KAL GYT+PT VQ ++IPA ++G DL+ +QTG+GKTAAF+LPAL
Sbjct: 1 MSFAQLNLNDHLHKALKACGYTEPTSVQAKSIPAILAGNDLVACAQTGTGKTAAFVLPAL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP-RMLVLTPTRELALQVTAATER 119
+ + K P++ R+L+LTPTRELA Q+T A
Sbjct: 61 QRLSMQK---------------------------PSKTTRILILTPTRELAAQITKAASL 93
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
YG ++K +S++GGMPY Q++ L+R +I++ATPGRL+DH+ S +++ SH+++LVLD
Sbjct: 94 YGKFLK-FNIVSLVGGMPYHHQIKDLARGADIIVATPGRLLDHIESKRVDLSHVEMLVLD 152
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+D+ I TP RQT+LFSAT+D + ++ ++ K+P+ + +++ +
Sbjct: 153 EADRMLDMGFIDDVTTIAKLTPEQRQTLLFSATIDKQLSHVIRHLLKNPIRIDLSNEKIS 212
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
I Q + V + HK +LL +LL DK + +A++F+ATK +AD +AD+L GF AA L
Sbjct: 213 APKIKQELYRVKNTQHKLQLLKHLLGDKNIYKAIIFSATKMNADRLADQLCDEGFPAAAL 272
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGDL QN RNRT+E LRRG+I+ LVATDVAARG+D+ ITHV NYDLP+F EDYVHRIGR
Sbjct: 273 HGDLRQNVRNRTVEQLRRGKIQFLVATDVAARGLDISDITHVINYDLPRFSEDYVHRIGR 332
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
TGRAG++G A+S V + ++++IER+ +++P+
Sbjct: 333 TGRAGKSGVAISFVLPTDMRHVQRIERYIDERLPL 367
>gi|226940616|ref|YP_002795690.1| ATP-dependent RNA helicase protein [Laribacter hongkongensis HLHK9]
gi|226715543|gb|ACO74681.1| Putative ATP-dependent RNA helicase protein [Laribacter
hongkongensis HLHK9]
Length = 520
Score = 360 bits (924), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 188/405 (46%), Positives = 256/405 (63%), Gaps = 28/405 (6%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F ++GL ++ AL + T PT VQ +A+P +SGRDL+ S+QTG+GKTAAF+LPAL +
Sbjct: 6 FAALGLDARLVHALEQHNITTPTPVQAEALPLLLSGRDLMASAQTGTGKTAAFLLPALSR 65
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
PV + PR+LVL PTREL QV A + +
Sbjct: 66 LLVE----PVARSR--------------------GPRILVLAPTRELVQQVAKAAQEFST 101
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+ ++ S++GG + Q Q+L+R E+++ATPGRL+D M SG+I+FS L++LVLDEAD
Sbjct: 102 KIPRVNVASVIGGTSFRTQNQMLTRPIEVMVATPGRLMDQMRSGRIDFSRLEMLVLDEAD 161
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLDMGF D+ +I P RQT F+AT+ V + A+ + +P +++ + K +N
Sbjct: 162 RMLDMGFSEDVMEIASQLPKARQTAFFTATMTRRVLDFADELLTEPAKIEIAAQTAKHEN 221
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
I Q +FVDDI HK RL+ ++L V QA+VF ATKRD D +AD L + G A LHGD
Sbjct: 222 IEQQAIFVDDIDHKRRLVRHILSQPDVKQAIVFVATKRDCDTLADELIVDGIRADALHGD 281
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q R RTL LR G+ ++LVATDVAARGIDV I+HV N+DLP+F EDYVHR+GRTGR
Sbjct: 282 MQQRDRTRTLTRLRSGQTEVLVATDVAARGIDVAGISHVINFDLPRFAEDYVHRVGRTGR 341
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVING----FEPK 403
AG G AVSLV + +KKIERFT Q++ + I G F+P+
Sbjct: 342 AGATGTAVSLVGRQDAFPLKKIERFTGQKLIVTEIEGMIARFKPQ 386
>gi|209964196|ref|YP_002297111.1| DEAD/DEAH box helicase [Rhodospirillum centenum SW]
gi|209957662|gb|ACI98298.1| DEAD/DEAH box helicase protein [Rhodospirillum centenum SW]
Length = 528
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 182/402 (45%), Positives = 259/402 (64%), Gaps = 24/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
++F +GL +LKA+ ++G+T PT +Q+QA+PAA++GRD++ S+ TG+GKTAAF+LP+L
Sbjct: 8 VSFSDLGLLPHLLKAVEELGFTTPTPIQQQALPAALTGRDVVASANTGTGKTAAFVLPSL 67
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ A++ PR+LVLTPTRELA QV +
Sbjct: 68 QRIATTARAEAAWG-----------------------PRVLVLTPTRELASQVLESVRNL 104
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
+ +I+ +ILGGMPY +Q+++L R ++++ATPGRL+DHM G+++ S +++LVLDE
Sbjct: 105 SKF-GRIQTGTILGGMPYRQQLEMLRRRVDLIVATPGRLMDHMERGRLDLSGVEVLVLDE 163
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF +E I A P RQT+LF+ATLD +A+ +T+DP+ + V
Sbjct: 164 ADRMLDMGFREAVEFIAAACPAERQTLLFTATLDRTAERLAQTLTRDPVRIDVAGKAVVT 223
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ Q L D + HK+RLL+ LL + G+ +VF ATK DAD +AD L+ G A PLH
Sbjct: 224 AQVEQRWLRADGLEHKHRLLETLLGGEEFGKGIVFIATKLDADRLADTLSEKGHKAMPLH 283
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+ Q RNR ++ LR GRI ++VATDVAARGID+ +THV N+DLPK EDYVHRIGRT
Sbjct: 284 GDMQQRDRNRVVQWLRDGRINVIVATDVAARGIDIADLTHVINFDLPKQAEDYVHRIGRT 343
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG +G + SL E ++ IE +T + + V+ G EP
Sbjct: 344 GRAGASGVSYSLFTRMEWRQVRAIEAYTNKAADMHVLPGLEP 385
>gi|146329248|ref|YP_001209905.1| ATP-dependent RNA helicase [Dichelobacter nodosus VCS1703A]
gi|146232718|gb|ABQ13696.1| ATP-dependent RNA helicase [Dichelobacter nodosus VCS1703A]
Length = 442
Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 182/403 (45%), Positives = 254/403 (63%), Gaps = 28/403 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F +GL +L+ + + GY KPT +Q +AIP A+ GRDL++S+QTGSGKTAAF+LP L
Sbjct: 4 TFSELGLSTQILRTISRHGYEKPTPIQARAIPLALQGRDLLLSAQTGSGKTAAFVLPILQ 63
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ A+ K + PR L++ PTRELA QV + +Y
Sbjct: 64 QLAAEPTKSKL-------------------------PRALIVIPTRELAQQVQDSVFQYS 98
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
K++ +I+++GG Y +Q++ L + I++ATPGRL+DH+ G ++ S ++ LVLDEA
Sbjct: 99 REFKELYSITLVGGTAYQKQIRALKKGVSIVVATPGRLLDHVREGHLDLSQIRYLVLDEA 158
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGF +D+ I+ P RQT++ SAT DG VG +A T + + I +
Sbjct: 159 DRMLDMGFSDDMHAIIKQCPQNRQTIMSSATWDGNVGKIAAGFTHNAEKI---IIAPETS 215
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
+I + F DD HKN +LD LL D+ V Q +VFTATK + +A L +GF A LHG
Sbjct: 216 HIEEISYFTDDQAHKNAVLDRLLADEAVTQCIVFTATKSTTETVAHHLYENGFQAQFLHG 275
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
DL Q RNR +E R G+I +LVATD+AARGID+PAI+HV NYDLP+ EDYVHRIGR+G
Sbjct: 276 DLQQQKRNRIIERFRNGQINVLVATDIAARGIDIPAISHVINYDLPRQSEDYVHRIGRSG 335
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
RAGR+G A++LV+ +R + IER+ K+ I +V+ G EP K
Sbjct: 336 RAGRSGVALNLVSLTDRAAMAHIERYLKRAIKTDVLEGLEPTK 378
>gi|171463843|ref|YP_001797956.1| DEAD/DEAH box helicase [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|171193381|gb|ACB44342.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 482
Score = 352 bits (902), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 185/404 (45%), Positives = 263/404 (65%), Gaps = 20/404 (4%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F++ L +LK + ++G+T+ T VQ Q IPAA++G DL+V+SQTGSGKTAAF+LP +++
Sbjct: 21 FQNFALAASLLKNVAELGFTQATAVQAQVIPAALAGSDLLVNSQTGSGKTAAFLLPLINQ 80
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
N NN+ + + AQP++LVL PTRELA QV A
Sbjct: 81 LIED-----------NPNNSPVPSR--------AQPKVLVLCPTRELAQQVAADAVNLVR 121
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
MK I+ +++GGMPY +Q+Q L + +++ATPGRL+D +S I ++ LV+DEAD
Sbjct: 122 GMKGIRIATVMGGMPYGKQIQAL-KGALLVVATPGRLLDLCDSKAIRLDDVKQLVIDEAD 180
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLDMGF +D+E I QT++FSAT + ++A +T + +++ +K N
Sbjct: 181 RMLDMGFADDLEAIDKRCAGRNQTLMFSATFAPKIMSLANELTTNAKRIELAHAGEKHAN 240
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
I Q + + D + HK++LL+++L D + QAVVF +T+ +++ IAD L +G+ A LHG
Sbjct: 241 IEQKLHWADSMSHKHKLLEHILADADLDQAVVFASTQVESEKIADTLRANGYEATALHGA 300
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q R R LE+LR+GR KILVATDVAARGIDVP I+HV N+ LP PEDY HRIGRTGR
Sbjct: 301 MPQAVRMRRLESLRKGRTKILVATDVAARGIDVPRISHVINFGLPMKPEDYTHRIGRTGR 360
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
AGRNG A++LV H +R I+ IERFT+Q I VI G EP+ ++
Sbjct: 361 AGRNGVAITLVEHRDRAKIRNIERFTQQDIVASVIAGLEPQAKL 404
>gi|145588844|ref|YP_001155441.1| DEAD/DEAH box helicase [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|145047250|gb|ABP33877.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 500
Score = 351 bits (900), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 186/404 (46%), Positives = 261/404 (64%), Gaps = 20/404 (4%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F++ L +LK + ++G+T+ T VQ Q IPAA++G DL+VSSQTGSGKTAAF+LP ++
Sbjct: 20 EFQNFALAASLLKNVAELGFTQATSVQAQVIPAALAGGDLLVSSQTGSGKTAAFLLPLIN 79
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ N NN+ + AQP++LVL PTRELA QV A
Sbjct: 80 QLIED-----------NPNNSPVPGR--------AQPKVLVLCPTRELAQQVAADAVNLV 120
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
MK I+ +++GGMPY +Q+Q L + +++ATPGRL+D +S I ++ LV+DEA
Sbjct: 121 RGMKGIRIATVMGGMPYGKQIQAL-KGALLVVATPGRLLDLCDSKAIRLDDVKQLVIDEA 179
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGF +D+E I QT++FSAT + ++A +T D +++ +K
Sbjct: 180 DRMLDMGFADDLEAIDKRCAGRNQTLMFSATFAPKIMSLANELTTDAKRIELAHAGEKHA 239
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
NI Q + + D + HK++LL+++L D + QAVVF +T+ +++ IAD L +G+ A+ LHG
Sbjct: 240 NIEQKLHWADSMSHKHKLLEHILADATLDQAVVFASTQVESEKIADTLRANGYEASALHG 299
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ Q R R LE+LR+G KILVATDVAARGIDVP I+HV N+ LP PEDY HRIGRTG
Sbjct: 300 AMPQAVRMRRLESLRKGHTKILVATDVAARGIDVPRISHVINFGLPMKPEDYTHRIGRTG 359
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
RAGRNG A++LV H +R I+ IERFT+Q I VI G EP+ +
Sbjct: 360 RAGRNGVAITLVEHRDRAKIRNIERFTQQDIVASVIAGLEPQAK 403
>gi|456062858|ref|YP_007501828.1| DEAD/DEAH box helicase domain-containing protein [beta
proteobacterium CB]
gi|455440155|gb|AGG33093.1| DEAD/DEAH box helicase domain-containing protein [beta
proteobacterium CB]
Length = 514
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 186/405 (45%), Positives = 261/405 (64%), Gaps = 22/405 (5%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F++ L +LK + ++GYT+ T VQ Q IPAA++G DL+VSSQTGSGKTAAF+LP ++
Sbjct: 13 EFQNFALAASLLKNVAELGYTQATSVQAQVIPAALAGGDLLVSSQTGSGKTAAFLLPLIN 72
Query: 62 KF-ASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + N PV + AQP++LVL PTRELA QV A
Sbjct: 73 QLIEDNPNGSPVPGR--------------------AQPKVLVLCPTRELAQQVAADAVNL 112
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
MK I+ +++GGMPY +Q+Q L + +++ATPGRL+D +S I ++ LV+DE
Sbjct: 113 VRGMKGIRIATVMGGMPYGKQIQAL-KGALLVVATPGRLLDLTDSKAIRLDDVKQLVIDE 171
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF +D+E I QT++FSAT + ++A +T + +++ +K
Sbjct: 172 ADRMLDMGFADDLEAIDKRCAARTQTLMFSATFAPKIMSLANELTTNAKRIELAHAGEKH 231
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NI Q + + D + HK++LL+++L D + QAVVF +T+ +++ IAD L +G+ A+ LH
Sbjct: 232 ANIEQKLHWADSMSHKHKLLEHILADASLDQAVVFASTQVESEKIADTLRANGYEASALH 291
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G + Q R R LE+LR+G KILVATDVAARGIDVP I+HV N+ LP PEDY HRIGRT
Sbjct: 292 GAMPQAVRMRRLESLRKGHTKILVATDVAARGIDVPRISHVINFGLPMKPEDYTHRIGRT 351
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
GRAGRNG A++LV H +R I+ IERFT+Q I VI G EP+ +
Sbjct: 352 GRAGRNGVAITLVEHRDRAKIRNIERFTQQDIVASVIAGLEPQAK 396
>gi|124268102|ref|YP_001022106.1| ATP-dependent RNA helicase [Methylibium petroleiphilum PM1]
gi|124260877|gb|ABM95871.1| putative ATP-dependent RNA helicase [Methylibium petroleiphilum
PM1]
Length = 516
Score = 348 bits (892), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 188/418 (44%), Positives = 261/418 (62%), Gaps = 39/418 (9%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
NF+S+GL +L A+ ++G+T PT VQEQAIPAA+ G D +VSSQTGSGKTAAF+LP LH
Sbjct: 75 NFESLGLAAPLLHAVTQLGFTAPTSVQEQAIPAALKGGDWMVSSQTGSGKTAAFLLPVLH 134
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTA------ 115
+ LN E+ R A PR +VL PTRELA QV+A
Sbjct: 135 RL-------------LNAGA------AEQTRV--ATPRAVVLCPTRELAQQVSADAIDLM 173
Query: 116 ---------ATERYGL--YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMN 164
+++ L + ++ +++GGMP+ +Q+ L R ++++ATPGRL+D +
Sbjct: 174 RGVGEALRAEAKQHPLRDAARGLRIATVVGGMPFGKQLFDL-RGAQLVVATPGRLLDLHS 232
Query: 165 SGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENI 224
G+I Q+LV+DEADRMLD+GF D+ I DAT QTM+FSAT + +A +
Sbjct: 233 RGQIRLDATQVLVVDEADRMLDLGFAEDLAAIADATAQRDQTMMFSATFAPRIMALASKL 292
Query: 225 TKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADI 284
+ P L++ + +ITQ++ + D++ HK LL++ LRD V QAVVF +T+ D +
Sbjct: 293 MRSPGRLELATAHDVHSDITQTLHWADNMGHKQALLEHWLRDAEVDQAVVFASTQVDTEA 352
Query: 285 IADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNY 344
IA+ L G A LHG + Q RNR L+N+R G +++LVATDVAARG+DVP+I+HV N+
Sbjct: 353 IAEALQQQGHSAVALHGAMPQAVRNRRLQNVRDGHVRVLVATDVAARGLDVPSISHVINF 412
Query: 345 DLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
LP EDYVHRIGRTGRAGR+G A+++ H ER I+ IE FT+Q I VI G EP
Sbjct: 413 GLPMKAEDYVHRIGRTGRAGRSGTAITIAEHRERGKIRAIEAFTRQPIEASVIVGLEP 470
>gi|260549866|ref|ZP_05824082.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD)
[Acinetobacter sp. RUH2624]
gi|260407116|gb|EEX00593.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD)
[Acinetobacter sp. RUH2624]
Length = 486
Score = 348 bits (892), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 176/401 (43%), Positives = 257/401 (64%), Gaps = 17/401 (4%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F LHE + +AL +G+T PT VQEQ+IPAA+ G+DL+VSSQTGSGKTAAF+LP L+
Sbjct: 27 TFAEFSLHETLQQALEGLGFTTPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLN 86
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
A + +P KER++ QP +LV++PTRELA QV+ +
Sbjct: 87 NLAGQETFVPF---------------KERMK-AVTQPNILVISPTRELAQQVSQDAIAFV 130
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N +I + L++DEA
Sbjct: 131 RHMKGVRIAAIMGGMPFAKQIQQL-KGAQVVVATPGRLLDLVNRRQIKLDQVDALIVDEA 189
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLD+GF D+E I + +QT++FSAT + +A + KDP+ + + +
Sbjct: 190 DRMLDLGFSEDLEAISELAANRKQTLMFSATFADRIIRLAACMMKDPMRIAIETGHSTNT 249
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
+ITQ++ + D HK +LL + L D+ + QAVVF +T+ D D++A+ L +G LHG
Sbjct: 250 DITQTLHWTDGFEHKKKLLTHWLSDENLDQAVVFASTQEDTDMLAEELAEAGHSVVALHG 309
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTG
Sbjct: 310 AMPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTG 369
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
RAGR G A++L + ER I+ +E + + ++ + I G EP
Sbjct: 370 RAGRTGQAITLATYRERGKIRALEEYLEARLSVSEIEGLEP 410
>gi|50086240|ref|YP_047750.1| ATP-dependent RNA helicase [Acinetobacter sp. ADP1]
gi|49532216|emb|CAG69928.1| putative ATP-dependent RNA helicase [Acinetobacter sp. ADP1]
Length = 640
Score = 348 bits (892), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 179/401 (44%), Positives = 257/401 (64%), Gaps = 17/401 (4%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
NF LHE + +AL +G+T PT VQEQAIPAA+ G+DL+VSSQTGSGKTAAF+LP LH
Sbjct: 8 NFADFSLHESLQQALQDLGFTSPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLH 67
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
A +P KER+R QP +LV++PTRELA QV+
Sbjct: 68 SLAGQDTFLPF---------------KERMR-AVTQPNILVISPTRELAQQVSQDAIALV 111
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N +I + L++DEA
Sbjct: 112 RHMKGVRIAAIMGGMPFAKQIQQL-KGAQVVVATPGRLLDLVNRRQIKLDKVDALIVDEA 170
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLD+GF D+E I + +QT++FSAT + +AE + +DP+ + + +
Sbjct: 171 DRMLDLGFSEDLEAISELAANRKQTLMFSATFADRIIRLAECMMQDPMRIAIETGHSTNT 230
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
+ITQ++ + D HK +LL + L D+ + QAVVF +T+ D D++A+ L +G LHG
Sbjct: 231 DITQTLHWTDGFEHKKKLLTHWLSDESMDQAVVFASTQEDTDMLAEELAEAGHSVVALHG 290
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ Q RNR L ++R G+ KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTG
Sbjct: 291 AMPQTVRNRRLRSIREGKAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTG 350
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
RAGR G A++L + ER I+ +E + + ++ + I G EP
Sbjct: 351 RAGRTGQAITLATYRERGKIRALEDYLEARLSVSEIEGLEP 391
>gi|406039229|ref|ZP_11046584.1| ATP-dependent RNA helicase [Acinetobacter ursingii DSM 16037 = CIP
107286]
Length = 641
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 178/400 (44%), Positives = 257/400 (64%), Gaps = 17/400 (4%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F LHE + +AL +G+T PT VQEQAIPAAI G+DL+VSSQTGSGKTAAF+LP LH
Sbjct: 5 FADFSLHESLQQALQDLGFTSPTPVQEQAIPAAIEGKDLLVSSQTGSGKTAAFLLPTLHA 64
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A +P KER++ QP +LV++PTRELA QV+ +
Sbjct: 65 LAGQDTFVPF---------------KERMK-AVTQPNILVISPTRELAQQVSQDAIAFVR 108
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N +I + L++DEAD
Sbjct: 109 HMKGVRIAAIMGGMPFAKQIQQL-KGAQVVVATPGRLLDLVNRRQIKLDKVDALIVDEAD 167
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLD+GF D+E I + +QT++FSAT + +AE + +DP+ + + + +
Sbjct: 168 RMLDLGFSEDLEAISELAANRKQTLMFSATFADRIIRLAECMMQDPMRIAIETGHSTNTD 227
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
ITQ++ + D HK +LL + L D+ + QAVVF +T+ D D++A+ L +G LHG
Sbjct: 228 ITQTLHWTDGFEHKKKLLTHWLSDENLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGA 287
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q RNR L ++R G+ KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTGR
Sbjct: 288 MPQTVRNRRLRSIREGKAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGR 347
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
AGR G A++L + ER I+ +E + + ++ + I G EP
Sbjct: 348 AGRTGQAITLATYRERGKIRALEDYLEARLSVSEIEGLEP 387
>gi|198283274|ref|YP_002219595.1| DEAD/DEAH box helicase [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218667828|ref|YP_002425861.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus ferrooxidans
ATCC 23270]
gi|198247795|gb|ACH83388.1| DEAD/DEAH box helicase domain protein [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218520041|gb|ACK80627.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus ferrooxidans
ATCC 23270]
Length = 418
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 176/403 (43%), Positives = 252/403 (62%), Gaps = 23/403 (5%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F+S+GL E + +A + GYT PT +QEQAIP +SG DL+ +QTG+GKTAAF +P LH
Sbjct: 3 SFESLGLSEPIWRAAAERGYTSPTPIQEQAIPVVMSGVDLLAGAQTGTGKTAAFAMPILH 62
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
K A + P+ R L+L PTRELA QV A+ + YG
Sbjct: 63 KLAVTAGSAS---------------------RAPSSVRALILVPTRELAAQVEASVQLYG 101
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
Y+ ++++ ++GG+ QMQ L R+ +IL+ATPGRL+DH+ ++ SH++ILVLDEA
Sbjct: 102 RYLP-LRSLVLIGGVKINPQMQKLRRSVDILVATPGRLLDHIQQRSVDLSHVEILVLDEA 160
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGFI DI +I+ P RQ +LFSAT + +A+ + +P ++V +
Sbjct: 161 DRMLDMGFIRDIRRILAVLPKKRQNLLFSATFSPEIRGLADGLLNNPTSVEVAARNATAD 220
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
N+ Q + VD K LL +L+ + + GQ +VFT TK AD +A L+ G A +HG
Sbjct: 221 NVAQRVFAVDQD-RKRELLSHLIEEHQWGQVLVFTRTKHGADRLARHLSQDGMQAMAIHG 279
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
D Q AR R L + G++++LVATD+AARGID+ + HV N++LP PEDYVHRIGRTG
Sbjct: 280 DKSQGARTRALAEFKEGKVQVLVATDIAARGIDISELPHVVNFELPHVPEDYVHRIGRTG 339
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
RAG NG AVSLV+ ER ++ +E+ ++ E++ GFEP++
Sbjct: 340 RAGNNGQAVSLVSSEERKQLQDVEKLLRRSFDREIVIGFEPRQ 382
>gi|425741827|ref|ZP_18859958.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-487]
gi|425489687|gb|EKU55989.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-487]
Length = 588
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 176/400 (44%), Positives = 257/400 (64%), Gaps = 17/400 (4%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F LHE + +AL +G+T PT VQEQ+IPAA+ G+DL+VSSQTGSGKTAAF+LP L+
Sbjct: 5 FAEFSLHETLQQALEGLGFTTPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLNN 64
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A + +P KER++ QP +LV++PTRELA QV+ +
Sbjct: 65 LAGQETFVPF---------------KERMK-AVTQPNILVISPTRELAQQVSQDAIAFVR 108
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N +I + L++DEAD
Sbjct: 109 HMKGVRIAAIMGGMPFAKQIQQL-KGAQVVVATPGRLLDLVNRRQIKLDQVDALIVDEAD 167
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLD+GF D+E I + +QT++FSAT + +A + KDP+ + + + +
Sbjct: 168 RMLDLGFSEDLEAISELAANRKQTLMFSATFADRIIRLAACMMKDPMRIAIETGHSTNTD 227
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
ITQ++ + D HK +LL + L D+ + QAVVF +T+ D D++A+ L +G LHG
Sbjct: 228 ITQTLHWTDGFEHKKKLLTHWLSDENLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGA 287
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTGR
Sbjct: 288 MPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGR 347
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
AGR G A++L + ER I+ +E + + ++ + I G EP
Sbjct: 348 AGRTGQAITLATYRERGKIRALEEYLEARLSVSEIEGLEP 387
>gi|424057887|ref|ZP_17795404.1| hypothetical protein W9I_01213 [Acinetobacter nosocomialis Ab22222]
gi|407439917|gb|EKF46438.1| hypothetical protein W9I_01213 [Acinetobacter nosocomialis Ab22222]
Length = 588
Score = 345 bits (885), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 176/400 (44%), Positives = 257/400 (64%), Gaps = 17/400 (4%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F LHE + +AL +G+T PT VQEQ+IPAA+ G+DL+VSSQTGSGKTAAF+LP L+
Sbjct: 5 FAEFSLHETLQQALEGLGFTTPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLNN 64
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A + +P KER++ QP +LV++PTRELA QV+ +
Sbjct: 65 LAGQETFVPF---------------KERMK-AVTQPNILVISPTRELAQQVSQDAIAFVR 108
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N +I + L++DEAD
Sbjct: 109 HMKGVRIAAIMGGMPFAKQIQQL-KGAQVVVATPGRLLDLVNRRQIKLDQVDALIVDEAD 167
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLD+GF D+E I + +QT++FSAT + +A + KDP+ + + + +
Sbjct: 168 RMLDLGFSEDLEAISELAANRKQTLMFSATFADRIIRLAACMMKDPMRIAIETGHSTNTD 227
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
ITQ++ + D HK +LL + L D+ + QAVVF +T+ D D++A+ L +G LHG
Sbjct: 228 ITQTLHWTDGFEHKKKLLTHWLSDENLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGA 287
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTGR
Sbjct: 288 MPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGR 347
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
AGR G A++L + ER I+ +E + + ++ + I G EP
Sbjct: 348 AGRTGQAITLATYRERGKIRALEEYLEARLSVSEIEGLEP 387
>gi|375136185|ref|YP_004996835.1| ATP-dependent RNA helicase [Acinetobacter calcoaceticus PHEA-2]
gi|325123630|gb|ADY83153.1| ATP-dependent RNA helicase [Acinetobacter calcoaceticus PHEA-2]
Length = 620
Score = 344 bits (883), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 178/400 (44%), Positives = 255/400 (63%), Gaps = 17/400 (4%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F LHE + +AL +G+T PT VQEQ+IPAA+ G+DL+VSSQTGSGKTAAF+LP LH
Sbjct: 5 FAEFSLHETLQQALEGLGFTTPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHN 64
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A + +P KER++ QP +LVL PTRELA QV+ +
Sbjct: 65 LAGQETFVPF---------------KERMKAV-TQPNILVLCPTRELAQQVSQDAIAFVR 108
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N ++ ++ L++DEAD
Sbjct: 109 HMKGVRIAAIMGGMPFGKQIQQL-KGAQVIVATPGRLLDLVNRRQLKLDKVEALIVDEAD 167
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLD+GF D+E I D RQT++FSAT + +AE + +P + + + +
Sbjct: 168 RMLDLGFSEDLEAISDLAGNRRQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTD 227
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
ITQ++ + D HK +LL + L D+ + QAVVF +T+ D D++A+ L +G LHG
Sbjct: 228 ITQTLHWTDGFEHKKKLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGA 287
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTGR
Sbjct: 288 MPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGR 347
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
AGR G A++L + ER I+ +E + ++ + I G EP
Sbjct: 348 AGRTGQAITLATYRERGKIRALEDYLDARLSVSEIEGLEP 387
>gi|293610799|ref|ZP_06693099.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292827143|gb|EFF85508.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 639
Score = 344 bits (882), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 178/400 (44%), Positives = 255/400 (63%), Gaps = 17/400 (4%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F LHE + +AL +G+T PT VQEQ+IPAA+ G+DL+VSSQTGSGKTAAF+LP LH
Sbjct: 28 FAEFSLHETLQQALEGLGFTTPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHN 87
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A + +P KER++ QP +LVL PTRELA QV+ +
Sbjct: 88 LAGQETFVPF---------------KERMK-AVTQPNILVLCPTRELAQQVSQDAIAFVR 131
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N ++ ++ L++DEAD
Sbjct: 132 HMKGVRIAAIMGGMPFGKQIQQL-KGAQVIVATPGRLLDLVNRRQLKLDKVEALIVDEAD 190
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLD+GF D+E I D RQT++FSAT + +AE + +P + + + +
Sbjct: 191 RMLDLGFSEDLEAISDLAGNRRQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTD 250
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
ITQ++ + D HK +LL + L D+ + QAVVF +T+ D D++A+ L +G LHG
Sbjct: 251 ITQTLHWTDGFEHKKKLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGA 310
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTGR
Sbjct: 311 MPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGR 370
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
AGR G A++L + ER I+ +E + ++ + I G EP
Sbjct: 371 AGRTGQAITLATYRERGKIRALEDYLDARLSVSEIEGLEP 410
>gi|427424031|ref|ZP_18914168.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-136]
gi|425699139|gb|EKU68758.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-136]
Length = 620
Score = 344 bits (882), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 178/400 (44%), Positives = 255/400 (63%), Gaps = 17/400 (4%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F LHE + +AL +G+T PT VQEQ+IPAA+ G+DL+VSSQTGSGKTAAF+LP LH
Sbjct: 5 FAEFSLHETLQQALEGLGFTTPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHN 64
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A + +P KER++ QP +LVL PTRELA QV+ +
Sbjct: 65 LAGQETFVPF---------------KERMKAV-TQPNILVLCPTRELAQQVSQDAIAFVR 108
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N ++ ++ L++DEAD
Sbjct: 109 HMKGVRIAAIMGGMPFGKQIQQL-KGAQVIVATPGRLLDLVNRRQLKLDKVEALIVDEAD 167
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLD+GF D+E I D RQT++FSAT + +AE + +P + + + +
Sbjct: 168 RMLDLGFSEDLEAISDLAGNRRQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTD 227
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
ITQ++ + D HK +LL + L D+ + QAVVF +T+ D D++A+ L +G LHG
Sbjct: 228 ITQTLHWTDGFEHKKKLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGA 287
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTGR
Sbjct: 288 MPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGR 347
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
AGR G A++L + ER I+ +E + ++ + I G EP
Sbjct: 348 AGRTGQAITLATYRERGKIRALEDYLDARLSVSEIEGLEP 387
>gi|424741474|ref|ZP_18169827.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-141]
gi|422944863|gb|EKU39840.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-141]
Length = 585
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 176/400 (44%), Positives = 256/400 (64%), Gaps = 17/400 (4%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F LHE + +AL +G+T PT VQEQAIPAA+ G+DL+VSSQTGSGKTAAF+LP L+
Sbjct: 5 FAEFSLHETLQQALEGLGFTAPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLNA 64
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A + +P K+R++ QP +LV++PTRELA QV+
Sbjct: 65 LAGQETVVPF---------------KDRMKAV-TQPNILVISPTRELAQQVSQDAIALVR 108
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N +I + L++DEAD
Sbjct: 109 HMKGVRIAAIMGGMPFAKQIQQL-KGAQVVVATPGRLLDLVNRRQIKLDQVDALIVDEAD 167
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLD+GF D+E I + +QT++FSAT + +A + KDP+ + + + +
Sbjct: 168 RMLDLGFSEDLEAISELAANRKQTLMFSATFADRIIRLASCMMKDPMRIAIETGHSTNTD 227
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
ITQ++ + D HK +LL + L D+ + QAVVF +T+ D D++A+ L +G LHG
Sbjct: 228 ITQTLHWTDGFEHKKKLLTHWLSDENLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGA 287
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTGR
Sbjct: 288 MPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGR 347
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
AGR G A++L + ER I+ +E + + ++ + I G EP
Sbjct: 348 AGRTGQAITLATYRERGKIRALEEYLEARLSVSEIEGLEP 387
>gi|299768643|ref|YP_003730669.1| putative ATP-dependent RNA helicase [Acinetobacter oleivorans DR1]
gi|298698731|gb|ADI89296.1| putative ATP-dependent RNA helicase [Acinetobacter oleivorans DR1]
Length = 644
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 176/400 (44%), Positives = 257/400 (64%), Gaps = 17/400 (4%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F LHE + +AL +G+T PT VQEQAIPAA+ G+DL+VSSQTGSGKTAAF+LP L+
Sbjct: 5 FAEFSLHETLQQALEGLGFTAPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLNA 64
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A + +P K+R++ QP +LV++PTRELA QV+ +
Sbjct: 65 LAGQETVVPF---------------KDRMKAV-TQPNILVISPTRELAQQVSQDAIAFVR 108
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N +I + L++DEAD
Sbjct: 109 HMKGVRIAAIMGGMPFAKQIQQL-KGAQVVVATPGRLLDLVNRRQIKLDQVDALIVDEAD 167
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLD+GF D+E I + +QT++FSAT + +A + KDP+ + + + +
Sbjct: 168 RMLDLGFSEDLEAISELAANRKQTLMFSATFADRIIRLASCMMKDPMRIAIETGHSTNTD 227
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
ITQ++ + D HK +LL + L D+ + QAVVF +T+ D D++A+ L +G LHG
Sbjct: 228 ITQTLHWTDGFEHKKKLLTHWLSDENLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGA 287
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTGR
Sbjct: 288 MPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGR 347
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
AGR G A++L + ER I+ +E + + ++ + I G EP
Sbjct: 348 AGRTGQAITLATYRERGKIRALEEYLEARLSVSEIEGLEP 387
>gi|417880132|ref|ZP_12524668.1| DEAD/DEAH box helicase, partial [Acinetobacter baumannii ABNIH3]
gi|421535047|ref|ZP_15981311.1| DEAD/DEAH box helicase, partial [Acinetobacter baumannii AC30]
gi|342225767|gb|EGT90747.1| DEAD/DEAH box helicase [Acinetobacter baumannii ABNIH3]
gi|409986927|gb|EKO43116.1| DEAD/DEAH box helicase, partial [Acinetobacter baumannii AC30]
Length = 399
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 176/400 (44%), Positives = 252/400 (63%), Gaps = 17/400 (4%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F LHE + +AL +G+T PT VQEQ+IPAA+ G+DL+VSSQTGSGKTAAF+LP LH
Sbjct: 4 TFAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLH 63
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
A +P KER++ QP +LVL PTRELA QV+ +
Sbjct: 64 NLAGQDTFVPF---------------KERMK-AVTQPSILVLCPTRELAQQVSQDAIAFV 107
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N ++ + L++DEA
Sbjct: 108 RHMKGVRIAAIMGGMPFGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEA 166
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLD+GF D+E I D QT++FSAT + +AE + +P + + +
Sbjct: 167 DRMLDLGFSEDLEAISDLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNT 226
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
+ITQ++ + D HK +LL + L D+ + QAVVF +T+ D D++A+ L +G LHG
Sbjct: 227 DITQTLHWTDGFEHKKKLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHG 286
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTG
Sbjct: 287 AMPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTG 346
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RAGR G A++L + ER I+ +E + + ++ + I G E
Sbjct: 347 RAGRTGQAITLATYRERGKIRALEDYLEARLNVSEIEGLE 386
>gi|421690573|ref|ZP_16130244.1| DEAD/DEAH box helicase [Acinetobacter baumannii IS-116]
gi|404564845|gb|EKA70024.1| DEAD/DEAH box helicase [Acinetobacter baumannii IS-116]
Length = 518
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 176/400 (44%), Positives = 252/400 (63%), Gaps = 17/400 (4%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F LHE + +AL +G+T PT VQEQ+IPAA+ G+DL+VSSQTGSGKTAAF+LP LH
Sbjct: 4 TFAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLH 63
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
A +P KER++ QP +LVL PTRELA QV+ +
Sbjct: 64 NLAGQDTFVPF---------------KERMK-AVTQPSILVLCPTRELAQQVSQDAIAFV 107
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N ++ + L++DEA
Sbjct: 108 RHMKGVRIAAIMGGMPFGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEA 166
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLD+GF D+E I D QT++FSAT + +AE + +P + + +
Sbjct: 167 DRMLDLGFSEDLEAISDLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNT 226
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
+ITQ++ + D HK +LL + L D+ + QAVVF +T+ D D++A+ L +G LHG
Sbjct: 227 DITQTLHWTDGFEHKKKLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHG 286
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTG
Sbjct: 287 AMPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTG 346
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RAGR G A++L + ER I+ +E + + ++ + I G E
Sbjct: 347 RAGRTGQAITLATYRERGKIRALEDYLEARLNVSEIEGLE 386
>gi|118594179|ref|ZP_01551526.1| putative ATP-dependent RNA helicase protein [Methylophilales
bacterium HTCC2181]
gi|118439957|gb|EAV46584.1| putative ATP-dependent RNA helicase protein [Methylophilales
bacterium HTCC2181]
Length = 427
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 174/401 (43%), Positives = 259/401 (64%), Gaps = 26/401 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F++ L +LKA+ + GY +PT +Q ++IP + + ++ S+QTG+GKTAAF+LP L
Sbjct: 1 MSFQTFNLDASILKAIQEAGYDQPTPIQTKSIPEIMLNKHVLASAQTGTGKTAAFVLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
K + KN ++ PR+L+++PTRELA Q+T + ++Y
Sbjct: 61 DK----------LTKNRSEGRG---------------PRVLIVSPTRELATQITDSIKKY 95
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y++ I +I+I GG+ Y Q ++ S+ +IL+ATPGRL+D KINF L++++LDE
Sbjct: 96 SRYLR-INSITITGGISYGLQNRMFSKPIDILVATPGRLLDLYQQKKINFKGLEVMILDE 154
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF+ DI KI +AT +Q ++FSAT D + +A+ +P+ + +
Sbjct: 155 ADRMLDMGFVPDIRKIYNATSKKQQMLMFSATFDPPIQKIAQEFLTNPVTISIKPDVSGH 214
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
KNI Q I F D+ HK ++LD+ +++ V QA++FTATKR AD ++D+L S + LH
Sbjct: 215 KNIKQLIYFADNQSHKQQMLDHFIKNDEVTQAIIFTATKRMADQLSDQLYHSDIKTSALH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+ Q +R +T+ +R KILVATD+A+RGIDV I+HVFNYD+P+F EDY+HRIGRT
Sbjct: 275 GDMSQGSRTKTINRFKRNETKILVATDLASRGIDVKNISHVFNYDMPRFAEDYIHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
GRA G A+SLV+ +R ++KIERFT +I I I G E
Sbjct: 335 GRANNKGIAISLVSPTDREFLRKIERFTNLKIEIASIPGME 375
>gi|262280249|ref|ZP_06058033.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD)
[Acinetobacter calcoaceticus RUH2202]
gi|262258027|gb|EEY76761.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD)
[Acinetobacter calcoaceticus RUH2202]
Length = 640
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 176/401 (43%), Positives = 258/401 (64%), Gaps = 17/401 (4%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F LHE + +AL +G+T PT VQEQAIPAA+ G+DL+VSSQTGSGKTAAF+LP L+
Sbjct: 4 SFAEFSLHETLQQALEGLGFTTPTTVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLN 63
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
A ++ +P K+R++ QP +LV++PTRELA QV+
Sbjct: 64 ALAGQESVVPF---------------KDRMKAV-TQPNILVISPTRELAQQVSQDAIALV 107
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N +I + L++DEA
Sbjct: 108 RHMKGVRIAAIMGGMPFAKQIQQL-KGAQVVVATPGRLLDLVNRRQIKLDQVDALIVDEA 166
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLD+GF D+E I + +QT++FSAT + +A + KDP+ + + +
Sbjct: 167 DRMLDLGFSEDLEAISELAANRKQTLMFSATFADRIIRLASCMMKDPMRIAIETGHSTNT 226
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
+ITQ++ + D HK +LL + L D+ + QAVVF +T+ D D++A+ L +G LHG
Sbjct: 227 DITQTLHWTDGFEHKKKLLTHWLSDENLDQAVVFASTQEDTDMLAEELAEAGHSVVALHG 286
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTG
Sbjct: 287 AMPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTG 346
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
RAGR G A++L + ER I+ +E + + ++ + I G EP
Sbjct: 347 RAGRTGQAITLATYRERGKIRALEEYLEARLSVSEIEGLEP 387
>gi|262370602|ref|ZP_06063927.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
gi|262314402|gb|EEY95444.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
Length = 640
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 180/400 (45%), Positives = 254/400 (63%), Gaps = 17/400 (4%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F LHE + +AL +G+T PT VQEQ+IPAA+ G+DL+VSSQTGSGKTAAF+LP L+
Sbjct: 5 FADFPLHESLQQALQSLGFTAPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLNA 64
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A+ + +P KER++ QP +LVL PTRELA QV+ +
Sbjct: 65 LAAQETFVPF---------------KERMKAI-TQPNILVLCPTRELAQQVSQDAIGFVR 108
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK + +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N +I + L++DEAD
Sbjct: 109 HMKGARIAAIMGGMPFGKQIQQL-KGAQVVVATPGRLLDLVNRRQIKLDQVDALIVDEAD 167
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLD+GF D+E I D +QT++FSAT G + +AE + DP + + + +
Sbjct: 168 RMLDLGFSEDLEAISDLAANRKQTLMFSATFAGRIITLAERMMNDPQRIAIETGHSTNTD 227
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
ITQ++ + D HK +LL + L + V QAVVF +T+ D D++A+ L +G LHG
Sbjct: 228 ITQTLHWTDGFEHKKKLLTHWLSAEDVDQAVVFASTQEDTDMLAEELAEAGLSVVALHGA 287
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTGR
Sbjct: 288 MPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGR 347
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
AGR G A++L + ER I+ +E F ++ + I G EP
Sbjct: 348 AGRTGKAITLATYRERGKIRALEDFLDARLNVSEIEGLEP 387
>gi|407008019|gb|EKE23513.1| hypothetical protein ACD_6C00443G0007, partial [uncultured
bacterium]
Length = 410
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 176/401 (43%), Positives = 254/401 (63%), Gaps = 17/401 (4%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F L E + +AL +G+T PT VQEQAIPAA+ G+DL+VSSQTGSGKTAAF+LP L+
Sbjct: 4 TFADFSLDESLTQALDALGFTTPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLN 63
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
A+ +P K+R++ QP +LV++PTRELA QV +
Sbjct: 64 ALANQDTLVPF---------------KDRMK-AVTQPNILVISPTRELAQQVCQDAIAFV 107
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N +I + L++DEA
Sbjct: 108 RHMKGVRIAAIMGGMPFGKQIQQL-KGAQVVVATPGRLLDLVNRRQIKLDKVDALIVDEA 166
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLD+GF D+E I + +QT++FSAT + +AE + DP+ + + +
Sbjct: 167 DRMLDLGFSEDLEAIGELAANRKQTLMFSATFAPRIITLAERMMNDPMRISIETGHSTNT 226
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
+ITQ++ + D HK +LL + L ++ V QAVVF +T+ D D++A+ L +G LHG
Sbjct: 227 DITQTLHWTDGFEHKKKLLTHWLNEEDVDQAVVFASTQEDTDMLAEELAEAGLSVVALHG 286
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTG
Sbjct: 287 AMPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTG 346
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
RAGR G A++L + ER I+ +E F ++ + I G EP
Sbjct: 347 RAGRTGKAITLATYRERGKIRALEDFLDARLNVSEIEGLEP 387
>gi|359428657|ref|ZP_09219687.1| ATP-dependent RNA helicase [Acinetobacter sp. NBRC 100985]
gi|358235843|dbj|GAB01226.1| ATP-dependent RNA helicase [Acinetobacter sp. NBRC 100985]
Length = 639
Score = 342 bits (876), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 178/400 (44%), Positives = 254/400 (63%), Gaps = 17/400 (4%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F LHE + +AL +G+T PT VQEQAIPAA+ G+DL+VSSQTGSGKTAAF+LP L+
Sbjct: 9 FAEFSLHETLQQALEGLGFTSPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLNA 68
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A + +P KER++ QP +LVL PTRELA QV+ +
Sbjct: 69 LAGQETFVPF---------------KERMK-AVTQPSILVLCPTRELAQQVSQDAIAFVR 112
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N ++ ++ L++DEAD
Sbjct: 113 HMKGVRIAAIMGGMPFGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVESLIVDEAD 171
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLD+GF D+E I D QT++FSAT + +AE + DP + + + +
Sbjct: 172 RMLDLGFSEDLEAISDLAANRNQTLMFSATFADRIIRLAERMMNDPERIAIETGHTTNTD 231
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
ITQ++ + D HK +LL + L D+ + QAVVF +T+ D D++A+ L +G LHG
Sbjct: 232 ITQTLHWTDGFEHKKKLLTHWLSDENLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGA 291
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTGR
Sbjct: 292 MPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGR 351
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
AGR G A++L + ER I+ +E + ++ + I G EP
Sbjct: 352 AGRTGQAITLATYRERGKIRALEDYLDARLNVSEIEGLEP 391
>gi|381197939|ref|ZP_09905278.1| ATP-dependent RNA helicase [Acinetobacter lwoffii WJ10621]
Length = 640
Score = 342 bits (876), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 179/400 (44%), Positives = 254/400 (63%), Gaps = 17/400 (4%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F LHE + +AL +G+T PT VQEQ+IPAA+ G+DL+VSSQTGSGKTAAF+LP L+
Sbjct: 5 FADFPLHESLQQALQSLGFTSPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLNA 64
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A+ + +P KER++ QP +LVL PTRELA QV+ +
Sbjct: 65 LAAQETFVPF---------------KERMKAI-TQPNILVLCPTRELAQQVSQDAIGFVR 108
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK + +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N +I + L++DEAD
Sbjct: 109 HMKGARIAAIMGGMPFGKQIQQL-KGAQVVVATPGRLLDLVNRRQIKLDQVDALIVDEAD 167
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLD+GF D+E I D +QT++FSAT G + +AE + DP + + + +
Sbjct: 168 RMLDLGFSEDLEAISDLAANRKQTLMFSATFAGRIITLAERMMNDPQRIAIETGHSTNTD 227
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
ITQ++ + D HK +LL + L + + QAVVF +T+ D D++A+ L +G LHG
Sbjct: 228 ITQTLHWTDGFEHKKKLLTHWLSAEDLDQAVVFASTQEDTDMLAEELAEAGLSVVALHGA 287
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTGR
Sbjct: 288 MPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGR 347
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
AGR G A++L + ER I+ +E F ++ + I G EP
Sbjct: 348 AGRTGKAITLATYRERGKIRALEDFLDARLNVSEIEGLEP 387
>gi|417872032|ref|ZP_12516943.1| ATP-dependent RNA helicase, partial [Acinetobacter baumannii
ABNIH1]
gi|342223883|gb|EGT88961.1| ATP-dependent RNA helicase [Acinetobacter baumannii ABNIH1]
Length = 458
Score = 341 bits (875), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 176/400 (44%), Positives = 252/400 (63%), Gaps = 17/400 (4%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F LHE + +AL +G+T PT VQEQ+IPAA+ G+DL+VSSQTGSGKTAAF+LP LH
Sbjct: 4 TFAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLH 63
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
A +P KER++ QP +LVL PTRELA QV+ +
Sbjct: 64 NLAGQDTFVPF---------------KERMK-AVTQPSILVLCPTRELAQQVSQDAIAFV 107
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N ++ + L++DEA
Sbjct: 108 RHMKGVRIAAIMGGMPFGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEA 166
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLD+GF D+E I D QT++FSAT + +AE + +P + + +
Sbjct: 167 DRMLDLGFSEDLEAISDLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNT 226
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
+ITQ++ + D HK +LL + L D+ + QAVVF +T+ D D++A+ L +G LHG
Sbjct: 227 DITQTLHWTDGFEHKKKLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHG 286
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTG
Sbjct: 287 AMPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTG 346
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RAGR G A++L + ER I+ +E + + ++ + I G E
Sbjct: 347 RAGRTGQAITLATYRERGKIRALEDYLEARLNVSEIEGLE 386
>gi|421466305|ref|ZP_15914984.1| DEAD/DEAH box helicase [Acinetobacter radioresistens WC-A-157]
gi|400203085|gb|EJO34078.1| DEAD/DEAH box helicase [Acinetobacter radioresistens WC-A-157]
Length = 618
Score = 341 bits (875), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 178/399 (44%), Positives = 254/399 (63%), Gaps = 17/399 (4%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F LHE + +AL +G+T PT VQEQAIPAA+ G+DL+VSSQTGSGKTAAF+LP L+
Sbjct: 5 FAEFSLHESLTQALTDLGFTAPTAVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLNA 64
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A +P KER+R QP +LV++PTRELA QV
Sbjct: 65 LADQDTFLPF---------------KERMR-AVTQPNILVISPTRELAQQVCQDAIALVR 108
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N +I + L++DEAD
Sbjct: 109 HMKGVRIAAIMGGMPFGKQIQQL-KGAQVVVATPGRLLDLVNRRQIKLDKVDALIVDEAD 167
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLD+GF D+E I + +QT++FSAT + +AE + KDP+ + + + +
Sbjct: 168 RMLDLGFSEDLEAISELALNRKQTLMFSATFADRIIRLAECMMKDPMRIAIETGHSTNTD 227
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
ITQ++ + D HK +LL + L D+ + QAVVF +T+ D D++A+ L +G LHG
Sbjct: 228 ITQTLHWTDGFEHKKKLLTHWLEDETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGA 287
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTGR
Sbjct: 288 MPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGR 347
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
AGR G A++L + ER I+ +E + + ++ + I G E
Sbjct: 348 AGRTGKAITLATYRERGKIRALEDYLETRLNVSEIEGLE 386
>gi|421855299|ref|ZP_16287679.1| putative ATP-dependent RNA helicase [Acinetobacter radioresistens
DSM 6976 = NBRC 102413]
gi|403189310|dbj|GAB73880.1| putative ATP-dependent RNA helicase [Acinetobacter radioresistens
DSM 6976 = NBRC 102413]
Length = 622
Score = 341 bits (875), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 178/399 (44%), Positives = 254/399 (63%), Gaps = 17/399 (4%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F LHE + +AL +G+T PT VQEQAIPAA+ G+DL+VSSQTGSGKTAAF+LP L+
Sbjct: 5 FAEFSLHESLTQALTDLGFTAPTAVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLNA 64
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A +P KER+R QP +LV++PTRELA QV
Sbjct: 65 LADQDTFLPF---------------KERMR-AVTQPNILVISPTRELAQQVCQDAIALVR 108
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N +I + L++DEAD
Sbjct: 109 HMKGVRIAAIMGGMPFGKQIQQL-KGAQVVVATPGRLLDLVNRRQIKLDKVDALIVDEAD 167
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLD+GF D+E I + +QT++FSAT + +AE + KDP+ + + + +
Sbjct: 168 RMLDLGFSEDLEAISELALNRKQTLMFSATFADRIIRLAECMMKDPMRIAIETGHSTNTD 227
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
ITQ++ + D HK +LL + L D+ + QAVVF +T+ D D++A+ L +G LHG
Sbjct: 228 ITQTLHWTDGFEHKKKLLTHWLEDETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGA 287
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTGR
Sbjct: 288 MPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGR 347
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
AGR G A++L + ER I+ +E + + ++ + I G E
Sbjct: 348 AGRTGKAITLATYRERGKIRALEDYLETRLNVSEIEGLE 386
>gi|421202050|ref|ZP_15659202.1| superfamily ii dna rna helicase, partial [Acinetobacter baumannii
AC12]
gi|398328356|gb|EJN44482.1| superfamily ii dna rna helicase, partial [Acinetobacter baumannii
AC12]
Length = 455
Score = 341 bits (875), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 176/400 (44%), Positives = 252/400 (63%), Gaps = 17/400 (4%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F LHE + +AL +G+T PT VQEQ+IPAA+ G+DL+VSSQTGSGKTAAF+LP LH
Sbjct: 4 TFAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLH 63
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
A +P KER++ QP +LVL PTRELA QV+ +
Sbjct: 64 NLAGQDTFVPF---------------KERMK-AVTQPSILVLCPTRELAQQVSQDAIAFV 107
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N ++ + L++DEA
Sbjct: 108 RHMKGVRIAAIMGGMPFGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEA 166
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLD+GF D+E I D QT++FSAT + +AE + +P + + +
Sbjct: 167 DRMLDLGFSEDLEAISDLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNT 226
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
+ITQ++ + D HK +LL + L D+ + QAVVF +T+ D D++A+ L +G LHG
Sbjct: 227 DITQTLHWTDGFEHKKKLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHG 286
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTG
Sbjct: 287 AMPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTG 346
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RAGR G A++L + ER I+ +E + + ++ + I G E
Sbjct: 347 RAGRTGQAITLATYRERGKIRALEDYLEARLNVSEIEGLE 386
>gi|332856302|ref|ZP_08436187.1| DEAD/DEAH box helicase, partial [Acinetobacter baumannii 6013150]
gi|332727108|gb|EGJ58577.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6013150]
Length = 475
Score = 341 bits (875), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 176/400 (44%), Positives = 252/400 (63%), Gaps = 17/400 (4%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F LHE + +AL +G+T PT VQEQ+IPAA+ G+DL+VSSQTGSGKTAAF+LP LH
Sbjct: 4 TFAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLH 63
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
A +P KER++ QP +LVL PTRELA QV+ +
Sbjct: 64 NLAGQDTFVPF---------------KERMK-AVTQPSILVLCPTRELAQQVSQDAIAFV 107
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N ++ + L++DEA
Sbjct: 108 RHMKGVRIAAIMGGMPFGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEA 166
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLD+GF D+E I D QT++FSAT + +AE + +P + + +
Sbjct: 167 DRMLDLGFSEDLEAISDLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNT 226
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
+ITQ++ + D HK +LL + L D+ + QAVVF +T+ D D++A+ L +G LHG
Sbjct: 227 DITQTLHWTDGFEHKKKLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHG 286
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTG
Sbjct: 287 AMPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTG 346
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RAGR G A++L + ER I+ +E + + ++ + I G E
Sbjct: 347 RAGRTGQAITLATYRERGKIRALEDYLEARLNVSEIEGLE 386
>gi|121997715|ref|YP_001002502.1| DEAD/DEAH box helicase [Halorhodospira halophila SL1]
gi|121589120|gb|ABM61700.1| DEAD/DEAH box helicase domain protein [Halorhodospira halophila
SL1]
Length = 403
Score = 341 bits (875), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 176/405 (43%), Positives = 246/405 (60%), Gaps = 25/405 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F++IGL + +L+A+ + GY +PT +Q QAIPA + G D++ S+QTG+GKTAAF LP L
Sbjct: 1 MTFENIGLSQELLRAVAQQGYDQPTAIQAQAIPAVLGGGDVMASAQTGTGKTAAFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + + + Q +I R LVLTPTRELA QV+ + Y
Sbjct: 61 QRLSDTAPQ---------QGQRRI--------------RALVLTPTRELAAQVSESVATY 97
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +++ I GG P +Q L R +I++ATPGRLIDH++ G ++ H+ +L+LDE
Sbjct: 98 GRHLP-LRSTEIYGGAPMGKQTAALRRGVDIVVATPGRLIDHLDRGNVDLRHVDMLILDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF IE+I+ + P RQT+LFSAT G VG +A +P +++ +
Sbjct: 157 ADRMLDMGFKPAIERILKSVPNQRQTLLFSATFSGAVGGLARRFLNEPTVIEAGTANAAA 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q FVD K LL L+ D Q +VFT TKR AD +A++L G + +H
Sbjct: 217 EAVEQGAYFVD-AGRKRELLTQLINDGDWRQVLVFTRTKRGADRLAEQLEREGIRSQSIH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD Q R R L +R ++ LVATDVAARG+D+ + HV NYDLP PEDY+HRIGRT
Sbjct: 276 GDKSQGQRGRALAAFKRKSVRALVATDVAARGLDIAGLPHVVNYDLPNNPEDYIHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
GR G +G A SLV ER K I+R K++IP ++ GFEP +R
Sbjct: 336 GRGGDSGEAWSLVGGEERGQFKAIQRLVKREIPAQIAQGFEPVRR 380
>gi|255319837|ref|ZP_05361042.1| DEAD/DEAH box helicase [Acinetobacter radioresistens SK82]
gi|262380369|ref|ZP_06073523.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
gi|255303156|gb|EET82368.1| DEAD/DEAH box helicase [Acinetobacter radioresistens SK82]
gi|262297815|gb|EEY85730.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
Length = 618
Score = 341 bits (874), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 178/399 (44%), Positives = 254/399 (63%), Gaps = 17/399 (4%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F LHE + +AL +G+T PT VQEQAIPAA+ G+DL+VSSQTGSGKTAAF+LP L+
Sbjct: 5 FAEFSLHESLTQALTDLGFTAPTAVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLNA 64
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A +P KER+R QP +LV++PTRELA QV
Sbjct: 65 LADQDTFLPF---------------KERMR-AVTQPNILVISPTRELAQQVCQDAIALVR 108
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N +I + L++DEAD
Sbjct: 109 HMKGVRIAAIMGGMPFGKQIQQL-KGAQVVVATPGRLLDLVNRRQIKLDKVDALIVDEAD 167
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLD+GF D+E I + +QT++FSAT + +AE + KDP+ + + + +
Sbjct: 168 RMLDLGFSEDLEAISELALNRKQTLMFSATFADRIIRLAECMMKDPMRIAIETGHSTNTD 227
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
ITQ++ + D HK +LL + L D+ + QAVVF +T+ D D++A+ L +G LHG
Sbjct: 228 ITQTLHWTDGFEHKKKLLTHWLEDETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGA 287
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTGR
Sbjct: 288 MPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGR 347
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
AGR G A++L + ER I+ +E + + ++ + I G E
Sbjct: 348 AGRTGKAITLATYRERGKIRALEDYLETRLNVSEIEGLE 386
>gi|344199440|ref|YP_004783766.1| DEAD/DEAH box helicase domain-containing protein [Acidithiobacillus
ferrivorans SS3]
gi|343774884|gb|AEM47440.1| DEAD/DEAH box helicase domain protein [Acidithiobacillus
ferrivorans SS3]
Length = 419
Score = 340 bits (873), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 174/403 (43%), Positives = 252/403 (62%), Gaps = 23/403 (5%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F+S+GL E + +A + GYT PT +QEQAIP +SG DL+ +QTG+GKTAAF +P LH
Sbjct: 3 SFESLGLSEPIWRAAAERGYTSPTPIQEQAIPVVMSGVDLLAGAQTGTGKTAAFAMPILH 62
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
K +++ + P+ R L+L PTRELA QV + + YG
Sbjct: 63 KLSATADTAA---------------------RGPSSVRALILVPTRELAAQVEESVQLYG 101
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
Y+ ++++ ++GG+ QMQ L R+ ++L+ATPGRL+DH+ ++ S ++ILVLDEA
Sbjct: 102 RYLS-LRSLVLIGGVKINPQMQKLRRSVDVLVATPGRLLDHIQQRSVDLSRVEILVLDEA 160
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGFI DI +I+ P RQ +LFSAT + +A+ + +P ++V S
Sbjct: 161 DRMLDMGFIRDIRRILAVLPKKRQNLLFSATFSPEIRALADGLLNNPASVEVASRNATAD 220
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
N+ Q + VD K LL +L+ + + GQ +VFT TK AD +A L+ G A +HG
Sbjct: 221 NVAQRVFAVDQD-RKRELLAHLIEEHQWGQVLVFTRTKHGADRLAKHLSQDGVQAMAIHG 279
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
D Q AR R L + G++++LVATD+AARGID+ + HV N++LP PEDYVHRIGRTG
Sbjct: 280 DKSQGARTRALAEFKEGKVRVLVATDIAARGIDISDLPHVVNFELPHVPEDYVHRIGRTG 339
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
RAG NG AVSLV+ ER ++ +E+ ++ EV+ GFEP++
Sbjct: 340 RAGNNGQAVSLVSSEERKQLQDVEKLLRRSFDREVVVGFEPRQ 382
>gi|425745889|ref|ZP_18863923.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-323]
gi|425487035|gb|EKU53394.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-323]
Length = 619
Score = 340 bits (873), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 178/400 (44%), Positives = 254/400 (63%), Gaps = 17/400 (4%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F LHE + +AL +G+T PT VQEQAIPAA+ G+DL+VSSQTGSGKTAAF+LP L+
Sbjct: 5 FAEFSLHETLQQALEGLGFTTPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLNA 64
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A +P KER++ QP +LV++PTRELA QV+ +
Sbjct: 65 LAGEDTFVPF---------------KERMK-AVTQPTILVISPTRELAQQVSQDAIAFVR 108
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N +I ++ L++DEAD
Sbjct: 109 HMKGVRIAAIMGGMPFGKQIQQL-KGAQVVVATPGRLLDLVNRRQIKLDKVESLIVDEAD 167
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLD+GF D+E I + QT++FSAT + +AE + DP + + + +
Sbjct: 168 RMLDLGFSEDLEAIGELAANRNQTLMFSATFADRIIRLAERMMNDPQRIAIETGHSTNTD 227
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
+TQ++ + D HK +LL + L D+ V QAVVF +T+ D D++A+ L +G LHG
Sbjct: 228 VTQTLHWTDGFEHKKKLLTHWLSDESVDQAVVFASTQEDTDMLAEELAEAGHSVVALHGA 287
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTGR
Sbjct: 288 MPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGR 347
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
AGR G AV+L + ER I+ +E + ++ + I G EP
Sbjct: 348 AGRTGQAVTLATYRERGKIRALEDYLDARLNVSEIEGLEP 387
>gi|384084915|ref|ZP_09996090.1| DEAD/DEAH box helicase domain-containing protein [Acidithiobacillus
thiooxidans ATCC 19377]
Length = 420
Score = 340 bits (872), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 179/403 (44%), Positives = 251/403 (62%), Gaps = 23/403 (5%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F S+GL E + +A + GYT PT +QEQAIP +SG DL+ +QTG+GKTAAF +P LH
Sbjct: 4 DFASLGLSEPIWRAAAERGYTTPTPIQEQAIPVVMSGVDLLAGAQTGTGKTAAFAMPILH 63
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
K A++ E P+ R LVL PTRELA QV + + YG
Sbjct: 64 KLAATS---------------------ETAFHGPSSVRALVLVPTRELAAQVEESVQLYG 102
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+ ++++ ++GG+ QMQ L R+ ++L+ATPGRL+DH+ ++ SH++ILVLDEA
Sbjct: 103 KNLS-LRSLILIGGVKINPQMQKLRRSVDVLVATPGRLLDHIQQRSVDLSHVEILVLDEA 161
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGFI DI +I+ P RQ +LFSAT + +A+ + +P+ ++V S
Sbjct: 162 DRMLDMGFIRDIRRILAVLPKKRQNLLFSATFSPEIRTLADGLLNNPVSVEVASRNATAD 221
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
++Q L VD K LL +L+ +++ Q +VFT TK AD +A L+ G A +HG
Sbjct: 222 TVSQRFLAVDQD-RKRELLTHLIGEQQWHQVLVFTRTKHGADRLAKHLSQGGMQAMAIHG 280
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
D Q AR R L + G++++LVATD+AARGID+ + HV NY+LP PEDYVHRIGRTG
Sbjct: 281 DKSQGARTRALAEFKEGKVRVLVATDIAARGIDINELPHVVNYELPHVPEDYVHRIGRTG 340
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
RAG NG AVSLV+ ER + +E+ K+ E+I GFEPK+
Sbjct: 341 RAGNNGQAVSLVSVDERKQLSDVEKLLKRSFTKEIIVGFEPKQ 383
>gi|402756148|ref|ZP_10858404.1| DNA/RNA helicase [Acinetobacter sp. NCTC 7422]
Length = 638
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 177/400 (44%), Positives = 255/400 (63%), Gaps = 17/400 (4%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F LHE + +AL +G+T PT VQEQAIPAA+ G+DL+VSSQTGSGKTAAF+LP L+
Sbjct: 5 FAEFSLHETLQQALEGLGFTTPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLNA 64
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A + +P KER++ QP +LV++PTRELA QV+ +
Sbjct: 65 LAGQETFVPF---------------KERMK-AVTQPTILVISPTRELAQQVSQDAIAFVR 108
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N ++ ++ L++DEAD
Sbjct: 109 HMKGVRIAAIMGGMPFGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVESLIVDEAD 167
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLD+GF D+E I + QT++FSAT + +AE + DP + + + +
Sbjct: 168 RMLDLGFAEDLEAIGELAANRNQTLMFSATFADRIIRLAERMMNDPQRIAIETGHSTNTD 227
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
+TQ++ + D HK +LL + L D+ V QAVVF +T+ D D++A+ L +G LHG
Sbjct: 228 VTQTLHWTDGFEHKKKLLTHWLSDESVDQAVVFASTQEDTDMLAEELAEAGHSVVALHGA 287
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTGR
Sbjct: 288 MPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGR 347
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
AGR G AV+L + ER I+ +E + ++ + I G EP
Sbjct: 348 AGRTGQAVTLATYRERGKIRALEDYLDARLNVSEIEGLEP 387
>gi|384133313|ref|YP_005515925.1| Putative ATP-dependent RNA helicase [Acinetobacter baumannii
1656-2]
gi|322509533|gb|ADX04987.1| Putative ATP-dependent RNA helicase [Acinetobacter baumannii
1656-2]
Length = 561
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 176/399 (44%), Positives = 252/399 (63%), Gaps = 17/399 (4%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F LHE + +AL +G+T PT VQEQ+IPAA+ G+DL+VSSQTGSGKTAAF+LP LH
Sbjct: 9 FAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHN 68
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A +P KER++ QP +LVL PTRELA QV+ +
Sbjct: 69 LAGQDTFVPF---------------KERMK-AVTQPSILVLCPTRELAQQVSQDAIAFVR 112
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N ++ + L++DEAD
Sbjct: 113 HMKGVRIAAIMGGMPFGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEAD 171
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLD+GF D+E I D QT++FSAT + +AE + +P + + + +
Sbjct: 172 RMLDLGFSEDLEAISDLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTD 231
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
ITQ++ + D HK +LL + L D+ + QAVVF +T+ D D++A+ L +G LHG
Sbjct: 232 ITQTLHWTDGFEHKKKLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGA 291
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTGR
Sbjct: 292 MPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGR 351
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
AGR G A++L + ER I+ +E + + ++ + I G E
Sbjct: 352 AGRTGQAITLATYRERGKIRALEDYLEARLNVSEIEGLE 390
>gi|294651664|ref|ZP_06728967.1| ATP-dependent RNA helicase [Acinetobacter haemolyticus ATCC 19194]
gi|292822443|gb|EFF81343.1| ATP-dependent RNA helicase [Acinetobacter haemolyticus ATCC 19194]
Length = 647
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 177/400 (44%), Positives = 255/400 (63%), Gaps = 17/400 (4%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F LHE + +AL +G+T PT VQEQAIPAA+ G+DL+VSSQTGSGKTAAF+LP L+
Sbjct: 5 FAEFSLHETLQQALEGLGFTTPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLNA 64
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A + +P KER++ QP +LV++PTRELA QV+ +
Sbjct: 65 LAGQETFVPF---------------KERMK-AVTQPTILVISPTRELAQQVSQDAIAFVR 108
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N ++ ++ L++DEAD
Sbjct: 109 HMKGVRIAAIMGGMPFGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVESLIVDEAD 167
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLD+GF D+E I + QT++FSAT + +AE + DP + + + +
Sbjct: 168 RMLDLGFAEDLEAIGELAANRNQTLMFSATFADRIIRLAERMMNDPQRIAIETGHSTNTD 227
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
+TQ++ + D HK +LL + L D+ V QAVVF +T+ D D++A+ L +G LHG
Sbjct: 228 VTQTLHWTDGFEHKKKLLTHWLSDESVDQAVVFASTQEDTDMLAEELAEAGHSVVALHGA 287
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTGR
Sbjct: 288 MPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGR 347
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
AGR G AV+L + ER I+ +E + ++ + I G EP
Sbjct: 348 AGRTGQAVTLATYRERGKIRALEDYLDARLNVSEIEGLEP 387
>gi|226953843|ref|ZP_03824307.1| ATP-dependent RNA helicase [Acinetobacter sp. ATCC 27244]
gi|226835434|gb|EEH67817.1| ATP-dependent RNA helicase [Acinetobacter sp. ATCC 27244]
Length = 647
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 177/400 (44%), Positives = 255/400 (63%), Gaps = 17/400 (4%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F LHE + +AL +G+T PT VQEQAIPAA+ G+DL+VSSQTGSGKTAAF+LP L+
Sbjct: 5 FAEFSLHETLQQALEGLGFTTPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLNA 64
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A + +P KER++ QP +LV++PTRELA QV+ +
Sbjct: 65 LAGQETFVPF---------------KERMK-AVTQPTILVISPTRELAQQVSQDAIAFVR 108
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N ++ ++ L++DEAD
Sbjct: 109 HMKGVRIAAIMGGMPFGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVESLIVDEAD 167
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLD+GF D+E I + QT++FSAT + +AE + DP + + + +
Sbjct: 168 RMLDLGFAEDLEAIGELAANRNQTLMFSATFADRIIRLAERMMNDPQRIAIETGHSTNTD 227
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
+TQ++ + D HK +LL + L D+ V QAVVF +T+ D D++A+ L +G LHG
Sbjct: 228 VTQTLHWTDGFEHKKKLLTHWLSDESVDQAVVFASTQEDTDMLAEELAEAGHSVVALHGA 287
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTGR
Sbjct: 288 MPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGR 347
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
AGR G AV+L + ER I+ +E + ++ + I G EP
Sbjct: 348 AGRTGQAVTLATYRERGKIRALEDYLDARLNVSEIEGLEP 387
>gi|358010394|ref|ZP_09142204.1| ATP-dependent RNA helicase [Acinetobacter sp. P8-3-8]
Length = 633
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 178/400 (44%), Positives = 254/400 (63%), Gaps = 17/400 (4%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F L E + KAL +G+T PT VQEQ+IPAA+ G+DL+VSSQTGSGKTAAF+LP L+
Sbjct: 5 FAEFSLDESLQKALESLGFTTPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLNA 64
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A + +P KER++ QP +LV++PTRELA QV +
Sbjct: 65 LAGQETFVPF---------------KERMKAV-TQPNILVISPTRELAQQVCQDAIAFVR 108
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N +I + L++DEAD
Sbjct: 109 HMKGVRVAAIMGGMPFGKQIQQL-KGAQVVVATPGRLLDLVNRRQIKLDLVDALIVDEAD 167
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLD+GF D+E I D +QT++FSAT + N+AE + DP + + + +
Sbjct: 168 RMLDLGFSEDLEAISDLALNRKQTLMFSATFAPRIINLAERMMNDPQRIAIETGHSTNTD 227
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
ITQ++ + D HK +LL + L ++ V QAVVF +T+ D D++A+ L +G LHG
Sbjct: 228 ITQTLHWTDGFEHKKKLLTHWLSEEDVDQAVVFASTQEDTDMLAEELAEAGLSVVALHGA 287
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTGR
Sbjct: 288 MPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGR 347
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
AGR G A++L + ER I+ +E + ++ + I G EP
Sbjct: 348 AGRTGKAITLATYRERGKIRALEDYLDARLSVSEIEGLEP 387
>gi|424058531|ref|ZP_17796028.1| hypothetical protein W9K_02859 [Acinetobacter baumannii Ab33333]
gi|404665773|gb|EKB33735.1| hypothetical protein W9K_02859 [Acinetobacter baumannii Ab33333]
Length = 586
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 176/399 (44%), Positives = 252/399 (63%), Gaps = 17/399 (4%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F LHE + +AL +G+T PT VQEQ+IPAA+ G+DL+VSSQTGSGKTAAF+LP LH
Sbjct: 5 FAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHN 64
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A +P KER++ QP +LVL PTRELA QV+ +
Sbjct: 65 LAGQDTFVPF---------------KERMK-AVTQPSILVLCPTRELAQQVSQDAIAFVR 108
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N ++ + L++DEAD
Sbjct: 109 HMKGVRIAAIMGGMPFGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEAD 167
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLD+GF D+E I D QT++FSAT + +AE + +P + + + +
Sbjct: 168 RMLDLGFSEDLEAISDLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTD 227
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
ITQ++ + D HK +LL + L D+ + QAVVF +T+ D D++A+ L +G LHG
Sbjct: 228 ITQTLHWTDGFEHKKKLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGA 287
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTGR
Sbjct: 288 MPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGR 347
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
AGR G A++L + ER I+ +E + + ++ + I G E
Sbjct: 348 AGRTGQAITLATYRERGKIRALEDYLEARLNVSEIEGLE 386
>gi|239503259|ref|ZP_04662569.1| Cold-shock DEAD box protein A(ATP-dependent RNA helicasedeaD)
[Acinetobacter baumannii AB900]
gi|421680324|ref|ZP_16120179.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC111]
gi|410389693|gb|EKP42104.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC111]
Length = 586
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 176/399 (44%), Positives = 252/399 (63%), Gaps = 17/399 (4%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F LHE + +AL +G+T PT VQEQ+IPAA+ G+DL+VSSQTGSGKTAAF+LP LH
Sbjct: 5 FAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHN 64
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A +P KER++ QP +LVL PTRELA QV+ +
Sbjct: 65 LAGQDTFVPF---------------KERMK-AVTQPSILVLCPTRELAQQVSQDAIAFVR 108
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N ++ + L++DEAD
Sbjct: 109 HMKGVRIAAIMGGMPFGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEAD 167
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLD+GF D+E I D QT++FSAT + +AE + +P + + + +
Sbjct: 168 RMLDLGFSEDLEAISDLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTD 227
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
ITQ++ + D HK +LL + L D+ + QAVVF +T+ D D++A+ L +G LHG
Sbjct: 228 ITQTLHWTDGFEHKKKLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGA 287
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTGR
Sbjct: 288 MPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGR 347
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
AGR G A++L + ER I+ +E + + ++ + I G E
Sbjct: 348 AGRTGQAITLATYRERGKIRALEDYLEARLNVSEIEGLE 386
>gi|169632326|ref|YP_001706062.1| ATP-dependent RNA helicase [Acinetobacter baumannii SDF]
gi|169151118|emb|CAO99784.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii]
Length = 619
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 177/399 (44%), Positives = 253/399 (63%), Gaps = 17/399 (4%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F LHE + +AL +G+T PT VQEQ+IPAA+ G+DL+VSSQTGSGKTAAF+LP LH
Sbjct: 9 FAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHN 68
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A +P KER++ QP +LVL PTRELA QV+ +
Sbjct: 69 LAGQDTFVPF---------------KERMK-AVTQPSILVLCPTRELAQQVSQDAIAFVR 112
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N ++ + L++DEAD
Sbjct: 113 HMKGVRIAAIMGGMPFGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEAD 171
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLD+GF D+E I D QT++FSAT + +AE + +P + + + +
Sbjct: 172 RMLDLGFSEDLEAISDLAVNRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTD 231
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
ITQ++ + D HK +LL + L D+ + QAVVF +T+ D D++A+ L +G LHG
Sbjct: 232 ITQTLHWTDGFEHKKKLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGA 291
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q ARNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTGR
Sbjct: 292 MPQTARNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGR 351
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
AGR G A++L + ER I+ +E + + ++ + I G E
Sbjct: 352 AGRTGQAITLATYRERGKIRALEDYLEARLNVSEIEGLE 390
>gi|424062002|ref|ZP_17799489.1| hypothetical protein W9M_02203 [Acinetobacter baumannii Ab44444]
gi|404674414|gb|EKB42162.1| hypothetical protein W9M_02203 [Acinetobacter baumannii Ab44444]
Length = 586
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 176/399 (44%), Positives = 252/399 (63%), Gaps = 17/399 (4%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F LHE + +AL +G+T PT VQEQ+IPAA+ G+DL+VSSQTGSGKTAAF+LP LH
Sbjct: 5 FAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHN 64
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A +P KER++ QP +LVL PTRELA QV+ +
Sbjct: 65 LAGQDTFVPF---------------KERMK-AVTQPSILVLCPTRELAQQVSQDAIAFVR 108
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N ++ + L++DEAD
Sbjct: 109 HMKGVRIAAIMGGMPFGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEAD 167
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLD+GF D+E I D QT++FSAT + +AE + +P + + + +
Sbjct: 168 RMLDLGFSEDLEAISDLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTD 227
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
ITQ++ + D HK +LL + L D+ + QAVVF +T+ D D++A+ L +G LHG
Sbjct: 228 ITQTLHWTDGFEHKKKLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGA 287
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTGR
Sbjct: 288 MPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGR 347
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
AGR G A++L + ER I+ +E + + ++ + I G E
Sbjct: 348 AGRTGQAITLATYRERGKIRALEDYLEARLNVSEIEGLE 386
>gi|215482158|ref|YP_002324340.1| DEAD/DEAH box helicase [Acinetobacter baumannii AB307-0294]
gi|332868649|ref|ZP_08438296.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6013113]
gi|403674395|ref|ZP_10936653.1| DEAD/DEAH box helicase [Acinetobacter sp. NCTC 10304]
gi|421621590|ref|ZP_16062506.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC074]
gi|421624521|ref|ZP_16065389.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC098]
gi|421641753|ref|ZP_16082284.1| DEAD/DEAH box helicase [Acinetobacter baumannii IS-235]
gi|421647827|ref|ZP_16088238.1| DEAD/DEAH box helicase [Acinetobacter baumannii IS-251]
gi|421649960|ref|ZP_16090342.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC0162]
gi|421654460|ref|ZP_16094787.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-72]
gi|421659596|ref|ZP_16099812.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-83]
gi|421661248|ref|ZP_16101425.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC110]
gi|421673855|ref|ZP_16113792.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC065]
gi|421695693|ref|ZP_16135298.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-692]
gi|421698540|ref|ZP_16138082.1| DEAD/DEAH box helicase [Acinetobacter baumannii IS-58]
gi|421796556|ref|ZP_16232616.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-21]
gi|421800253|ref|ZP_16236232.1| DEAD/DEAH box helicase [Acinetobacter baumannii Canada BC1]
gi|421804005|ref|ZP_16239917.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-A-694]
gi|445489836|ref|ZP_21458844.1| DEAD/DEAH box helicase [Acinetobacter baumannii AA-014]
gi|213986281|gb|ACJ56580.1| Cold-shock DEAD box protein A(ATP-dependent RNA helicasedeaD)
[Acinetobacter baumannii AB307-0294]
gi|332733221|gb|EGJ64416.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6013113]
gi|404565211|gb|EKA70381.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-692]
gi|404572840|gb|EKA77882.1| DEAD/DEAH box helicase [Acinetobacter baumannii IS-58]
gi|408510231|gb|EKK11893.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-72]
gi|408512359|gb|EKK14004.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC0162]
gi|408514505|gb|EKK16111.1| DEAD/DEAH box helicase [Acinetobacter baumannii IS-235]
gi|408516021|gb|EKK17600.1| DEAD/DEAH box helicase [Acinetobacter baumannii IS-251]
gi|408697499|gb|EKL43011.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC074]
gi|408701178|gb|EKL46617.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC098]
gi|408706929|gb|EKL52223.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-83]
gi|408716097|gb|EKL61218.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC110]
gi|410386073|gb|EKP38557.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC065]
gi|410398805|gb|EKP51011.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-21]
gi|410408461|gb|EKP60429.1| DEAD/DEAH box helicase [Acinetobacter baumannii Canada BC1]
gi|410412471|gb|EKP64330.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-A-694]
gi|444766278|gb|ELW90553.1| DEAD/DEAH box helicase [Acinetobacter baumannii AA-014]
Length = 586
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 176/399 (44%), Positives = 252/399 (63%), Gaps = 17/399 (4%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F LHE + +AL +G+T PT VQEQ+IPAA+ G+DL+VSSQTGSGKTAAF+LP LH
Sbjct: 5 FAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHN 64
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A +P KER++ QP +LVL PTRELA QV+ +
Sbjct: 65 LAGQDTFVPF---------------KERMK-AVTQPSILVLCPTRELAQQVSQDAIAFVR 108
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N ++ + L++DEAD
Sbjct: 109 HMKGVRIAAIMGGMPFGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEAD 167
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLD+GF D+E I D QT++FSAT + +AE + +P + + + +
Sbjct: 168 RMLDLGFSEDLEAISDLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTD 227
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
ITQ++ + D HK +LL + L D+ + QAVVF +T+ D D++A+ L +G LHG
Sbjct: 228 ITQTLHWTDGFEHKKKLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGA 287
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTGR
Sbjct: 288 MPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGR 347
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
AGR G A++L + ER I+ +E + + ++ + I G E
Sbjct: 348 AGRTGQAITLATYRERGKIRALEDYLEARLNVSEIEGLE 386
>gi|425748509|ref|ZP_18866496.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-348]
gi|425491390|gb|EKU57675.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-348]
Length = 586
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 176/399 (44%), Positives = 252/399 (63%), Gaps = 17/399 (4%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F LHE + +AL +G+T PT VQEQ+IPAA+ G+DL+VSSQTGSGKTAAF+LP LH
Sbjct: 5 FAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHN 64
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A +P KER++ QP +LVL PTRELA QV+ +
Sbjct: 65 LAGQDTFVPF---------------KERMK-AVTQPSILVLCPTRELAQQVSQDAIAFVR 108
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N ++ + L++DEAD
Sbjct: 109 HMKGVRIAAIMGGMPFGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEAD 167
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLD+GF D+E I D QT++FSAT + +AE + +P + + + +
Sbjct: 168 RMLDLGFSEDLEAISDLAANRGQTLMFSATFADRIICLAERMMNEPERIAIETGHSTNTD 227
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
ITQ++ + D HK +LL + L D+ + QAVVF +T+ D D++A+ L +G LHG
Sbjct: 228 ITQTLHWTDGFEHKKKLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGA 287
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTGR
Sbjct: 288 MPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGR 347
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
AGR G A++L + ER I+ +E + + ++ + I G E
Sbjct: 348 AGRTGQAITLATYRERGKIRALEDYLEARLNVSEIEGLE 386
>gi|445456165|ref|ZP_21445699.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC047]
gi|444778696|gb|ELX02706.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC047]
Length = 615
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 176/399 (44%), Positives = 252/399 (63%), Gaps = 17/399 (4%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F LHE + +AL +G+T PT VQEQ+IPAA+ G+DL+VSSQTGSGKTAAF+LP LH
Sbjct: 5 FAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHN 64
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A +P KER++ QP +LVL PTRELA QV+ +
Sbjct: 65 LAGQDTFVPF---------------KERMK-AVTQPSILVLCPTRELAQQVSQDAIAFVR 108
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N ++ + L++DEAD
Sbjct: 109 HMKGVRIAAIMGGMPFGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEAD 167
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLD+GF D+E I D QT++FSAT + +AE + +P + + + +
Sbjct: 168 RMLDLGFSEDLEAISDLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTD 227
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
ITQ++ + D HK +LL + L D+ + QAVVF +T+ D D++A+ L +G LHG
Sbjct: 228 ITQTLHWTDGFEHKKKLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGA 287
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTGR
Sbjct: 288 MPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGR 347
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
AGR G A++L + ER I+ +E + + ++ + I G E
Sbjct: 348 AGRTGQAITLATYRERGKIRALEDYLEARLNVSEIEGLE 386
>gi|385239052|ref|YP_005800391.1| superfamily II DNA/RNA helicase [Acinetobacter baumannii
TCDC-AB0715]
gi|387122460|ref|YP_006288342.1| DNA/RNA helicase [Acinetobacter baumannii MDR-TJ]
gi|407934207|ref|YP_006849850.1| DNA/RNA helicase [Acinetobacter baumannii TYTH-1]
gi|416146923|ref|ZP_11601470.1| superfamily II DNA/RNA helicase [Acinetobacter baumannii AB210]
gi|421704883|ref|ZP_16144324.1| DNA/RNA helicase [Acinetobacter baumannii ZWS1122]
gi|421708662|ref|ZP_16148035.1| DNA/RNA helicase [Acinetobacter baumannii ZWS1219]
gi|323519553|gb|ADX93934.1| superfamily II DNA/RNA helicase [Acinetobacter baumannii
TCDC-AB0715]
gi|333365879|gb|EGK47893.1| superfamily II DNA/RNA helicase [Acinetobacter baumannii AB210]
gi|385876952|gb|AFI94047.1| DNA/RNA helicase, superfamily II [Acinetobacter baumannii MDR-TJ]
gi|407188976|gb|EKE60204.1| DNA/RNA helicase [Acinetobacter baumannii ZWS1122]
gi|407189390|gb|EKE60616.1| DNA/RNA helicase [Acinetobacter baumannii ZWS1219]
gi|407902788|gb|AFU39619.1| DNA/RNA helicase [Acinetobacter baumannii TYTH-1]
Length = 606
Score = 338 bits (867), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 176/399 (44%), Positives = 252/399 (63%), Gaps = 17/399 (4%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F LHE + +AL +G+T PT VQEQ+IPAA+ G+DL+VSSQTGSGKTAAF+LP LH
Sbjct: 5 FAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHN 64
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A +P KER++ QP +LVL PTRELA QV+ +
Sbjct: 65 LAGQDTFVPF---------------KERMK-AVTQPSILVLCPTRELAQQVSQDAIAFVR 108
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N ++ + L++DEAD
Sbjct: 109 HMKGVRIAAIMGGMPFGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEAD 167
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLD+GF D+E I D QT++FSAT + +AE + +P + + + +
Sbjct: 168 RMLDLGFSEDLEAISDLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTD 227
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
ITQ++ + D HK +LL + L D+ + QAVVF +T+ D D++A+ L +G LHG
Sbjct: 228 ITQTLHWTDGFEHKKKLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGA 287
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTGR
Sbjct: 288 MPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGR 347
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
AGR G A++L + ER I+ +E + + ++ + I G E
Sbjct: 348 AGRTGQAITLATYRERGKIRALEDYLEARLNVSEIEGLE 386
>gi|184159623|ref|YP_001847962.1| superfamily II DNA/RNA helicase [Acinetobacter baumannii ACICU]
gi|332876108|ref|ZP_08443892.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6014059]
gi|417570347|ref|ZP_12221204.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC189]
gi|417576490|ref|ZP_12227335.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-17]
gi|417875137|ref|ZP_12519958.1| ATP-dependent RNA helicase [Acinetobacter baumannii ABNIH2]
gi|417882960|ref|ZP_12527229.1| ATP-dependent RNA helicase [Acinetobacter baumannii ABNIH4]
gi|421629104|ref|ZP_16069854.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC180]
gi|421685872|ref|ZP_16125638.1| DEAD/DEAH box helicase [Acinetobacter baumannii IS-143]
gi|421791028|ref|ZP_16227216.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-2]
gi|424050835|ref|ZP_17788371.1| hypothetical protein W9G_02727 [Acinetobacter baumannii Ab11111]
gi|425754022|ref|ZP_18871889.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-113]
gi|445463866|ref|ZP_21449401.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC338]
gi|445478650|ref|ZP_21454773.1| type III restriction enzyme, res subunit / helicase C-terminal
domain multi-domain protein [Acinetobacter baumannii
Naval-78]
gi|183211217|gb|ACC58615.1| Superfamily II DNA and RNA helicase [Acinetobacter baumannii ACICU]
gi|332735726|gb|EGJ66769.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6014059]
gi|342226666|gb|EGT91628.1| ATP-dependent RNA helicase [Acinetobacter baumannii ABNIH2]
gi|342236705|gb|EGU01215.1| ATP-dependent RNA helicase [Acinetobacter baumannii ABNIH4]
gi|395550795|gb|EJG16804.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC189]
gi|395569711|gb|EJG30373.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-17]
gi|404570899|gb|EKA75971.1| DEAD/DEAH box helicase [Acinetobacter baumannii IS-143]
gi|404669588|gb|EKB37481.1| hypothetical protein W9G_02727 [Acinetobacter baumannii Ab11111]
gi|408703963|gb|EKL49343.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC180]
gi|410403906|gb|EKP55980.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-2]
gi|425497415|gb|EKU63521.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-113]
gi|444774723|gb|ELW98799.1| type III restriction enzyme, res subunit / helicase C-terminal
domain multi-domain protein [Acinetobacter baumannii
Naval-78]
gi|444780215|gb|ELX04181.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC338]
Length = 615
Score = 338 bits (867), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 176/399 (44%), Positives = 252/399 (63%), Gaps = 17/399 (4%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F LHE + +AL +G+T PT VQEQ+IPAA+ G+DL+VSSQTGSGKTAAF+LP LH
Sbjct: 5 FAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHN 64
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A +P KER++ QP +LVL PTRELA QV+ +
Sbjct: 65 LAGQDTFVPF---------------KERMK-AVTQPSILVLCPTRELAQQVSQDAIAFVR 108
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N ++ + L++DEAD
Sbjct: 109 HMKGVRIAAIMGGMPFGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEAD 167
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLD+GF D+E I D QT++FSAT + +AE + +P + + + +
Sbjct: 168 RMLDLGFSEDLEAISDLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTD 227
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
ITQ++ + D HK +LL + L D+ + QAVVF +T+ D D++A+ L +G LHG
Sbjct: 228 ITQTLHWTDGFEHKKKLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGA 287
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTGR
Sbjct: 288 MPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGR 347
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
AGR G A++L + ER I+ +E + + ++ + I G E
Sbjct: 348 AGRTGQAITLATYRERGKIRALEDYLEARLNVSEIEGLE 386
>gi|126643119|ref|YP_001086103.1| ATP-dependent RNA helicase [Acinetobacter baumannii ATCC 17978]
gi|213158859|ref|YP_002320857.1| DEAD/DEAH box helicase [Acinetobacter baumannii AB0057]
gi|417546591|ref|ZP_12197677.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC032]
gi|417550372|ref|ZP_12201451.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-18]
gi|417553488|ref|ZP_12204557.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-81]
gi|417563156|ref|ZP_12214035.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC137]
gi|417563640|ref|ZP_12214514.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC143]
gi|417572732|ref|ZP_12223586.1| DEAD/DEAH box helicase [Acinetobacter baumannii Canada BC-5]
gi|421199750|ref|ZP_15656911.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC109]
gi|421455389|ref|ZP_15904733.1| DEAD/DEAH box helicase [Acinetobacter baumannii IS-123]
gi|421633323|ref|ZP_16073960.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-13]
gi|421665758|ref|ZP_16105864.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC087]
gi|421669129|ref|ZP_16109157.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC099]
gi|421788966|ref|ZP_16225234.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-82]
gi|421809430|ref|ZP_16245265.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC035]
gi|445398086|ref|ZP_21429457.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-57]
gi|445444213|ref|ZP_21442857.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-A-92]
gi|126389003|gb|ABO13501.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii ATCC
17978]
gi|213058019|gb|ACJ42921.1| DEAD/DEAH box helicase [Acinetobacter baumannii AB0057]
gi|395525738|gb|EJG13827.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC137]
gi|395555396|gb|EJG21397.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC143]
gi|395564747|gb|EJG26398.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC109]
gi|400208300|gb|EJO39270.1| DEAD/DEAH box helicase [Acinetobacter baumannii Canada BC-5]
gi|400211627|gb|EJO42589.1| DEAD/DEAH box helicase [Acinetobacter baumannii IS-123]
gi|400384479|gb|EJP43157.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC032]
gi|400386197|gb|EJP49271.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-18]
gi|400389905|gb|EJP56952.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-81]
gi|408706783|gb|EKL52083.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-13]
gi|410389256|gb|EKP41671.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC099]
gi|410389492|gb|EKP41904.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC087]
gi|410399852|gb|EKP52033.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-82]
gi|410414327|gb|EKP66129.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC035]
gi|444761858|gb|ELW86235.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-A-92]
gi|444783845|gb|ELX07682.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-57]
gi|452946371|gb|EME51870.1| ATP-dependent RNA helicase [Acinetobacter baumannii MSP4-16]
Length = 615
Score = 338 bits (867), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 176/399 (44%), Positives = 252/399 (63%), Gaps = 17/399 (4%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F LHE + +AL +G+T PT VQEQ+IPAA+ G+DL+VSSQTGSGKTAAF+LP LH
Sbjct: 5 FAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHN 64
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A +P KER++ QP +LVL PTRELA QV+ +
Sbjct: 65 LAGQDTFVPF---------------KERMK-AVTQPSILVLCPTRELAQQVSQDAIAFVR 108
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N ++ + L++DEAD
Sbjct: 109 HMKGVRIAAIMGGMPFGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEAD 167
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLD+GF D+E I D QT++FSAT + +AE + +P + + + +
Sbjct: 168 RMLDLGFSEDLEAISDLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTD 227
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
ITQ++ + D HK +LL + L D+ + QAVVF +T+ D D++A+ L +G LHG
Sbjct: 228 ITQTLHWTDGFEHKKKLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGA 287
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTGR
Sbjct: 288 MPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGR 347
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
AGR G A++L + ER I+ +E + + ++ + I G E
Sbjct: 348 AGRTGQAITLATYRERGKIRALEDYLEARLNVSEIEGLE 386
>gi|384144733|ref|YP_005527443.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii
MDR-ZJ06]
gi|347595226|gb|AEP07947.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii
MDR-ZJ06]
Length = 610
Score = 338 bits (867), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 176/399 (44%), Positives = 252/399 (63%), Gaps = 17/399 (4%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F LHE + +AL +G+T PT VQEQ+IPAA+ G+DL+VSSQTGSGKTAAF+LP LH
Sbjct: 9 FAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHN 68
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A +P KER++ QP +LVL PTRELA QV+ +
Sbjct: 69 LAGQDTFVPF---------------KERMK-AVTQPSILVLCPTRELAQQVSQDAIAFVR 112
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N ++ + L++DEAD
Sbjct: 113 HMKGVRIAAIMGGMPFGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEAD 171
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLD+GF D+E I D QT++FSAT + +AE + +P + + + +
Sbjct: 172 RMLDLGFSEDLEAISDLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTD 231
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
ITQ++ + D HK +LL + L D+ + QAVVF +T+ D D++A+ L +G LHG
Sbjct: 232 ITQTLHWTDGFEHKKKLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGA 291
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTGR
Sbjct: 292 MPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGR 351
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
AGR G A++L + ER I+ +E + + ++ + I G E
Sbjct: 352 AGRTGQAITLATYRERGKIRALEDYLEARLNVSEIEGLE 390
>gi|169794570|ref|YP_001712363.1| ATP-dependent RNA helicase [Acinetobacter baumannii AYE]
gi|260557002|ref|ZP_05829219.1| DEAD/DEAH box helicase [Acinetobacter baumannii ATCC 19606 = CIP
70.34]
gi|169147497|emb|CAM85358.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii AYE]
gi|260409608|gb|EEX02909.1| DEAD/DEAH box helicase [Acinetobacter baumannii ATCC 19606 = CIP
70.34]
Length = 619
Score = 338 bits (867), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 176/399 (44%), Positives = 252/399 (63%), Gaps = 17/399 (4%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F LHE + +AL +G+T PT VQEQ+IPAA+ G+DL+VSSQTGSGKTAAF+LP LH
Sbjct: 9 FAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHN 68
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A +P KER++ QP +LVL PTRELA QV+ +
Sbjct: 69 LAGQDTFVPF---------------KERMK-AVTQPSILVLCPTRELAQQVSQDAIAFVR 112
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N ++ + L++DEAD
Sbjct: 113 HMKGVRIAAIMGGMPFGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEAD 171
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLD+GF D+E I D QT++FSAT + +AE + +P + + + +
Sbjct: 172 RMLDLGFSEDLEAISDLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTD 231
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
ITQ++ + D HK +LL + L D+ + QAVVF +T+ D D++A+ L +G LHG
Sbjct: 232 ITQTLHWTDGFEHKKKLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGA 291
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTGR
Sbjct: 292 MPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGR 351
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
AGR G A++L + ER I+ +E + + ++ + I G E
Sbjct: 352 AGRTGQAITLATYRERGKIRALEDYLEARLNVSEIEGLE 390
>gi|262373548|ref|ZP_06066826.1| DEAD/DEAH box helicase [Acinetobacter junii SH205]
gi|262311301|gb|EEY92387.1| DEAD/DEAH box helicase [Acinetobacter junii SH205]
Length = 642
Score = 338 bits (866), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 176/400 (44%), Positives = 253/400 (63%), Gaps = 17/400 (4%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F LHE + +AL +G+T PT VQEQAIPAA+ G+DL+VSSQTGSGKTAAF+LP L+
Sbjct: 5 FAEFSLHETLQQALEGLGFTSPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLNA 64
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
+ +P KER++ QP +LVL PTRELA QV+ +
Sbjct: 65 LTGQETFVPF---------------KERMKAI-TQPSILVLCPTRELAQQVSQDAIAFVR 108
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N ++ ++ L++DEAD
Sbjct: 109 HMKGVRIAAIMGGMPFGKQIQQL-KGAQVIVATPGRLLDLVNRRQLKLDKVESLIVDEAD 167
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLD+GF D+E I + QT++FSAT + +AE + DP + + + +
Sbjct: 168 RMLDLGFSEDLEAIGELAANRNQTLMFSATFADRIIRLAERMMNDPQRIAIETGHSTNTD 227
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
+TQ++ + D HK +LL + L D+ V QAVVF +T+ D D++A+ L +G LHG
Sbjct: 228 VTQTLHWTDGFEHKKKLLTHWLSDESVDQAVVFASTQEDTDMLAEELAEAGHSVVALHGA 287
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTGR
Sbjct: 288 MPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGR 347
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
AGR G A++L + ER I+ +E + ++ + I G EP
Sbjct: 348 AGRTGQAITLATYRERGKIRALEDYLDARLNVSEIEGLEP 387
>gi|403050220|ref|ZP_10904704.1| ATP-dependent RNA helicase [Acinetobacter bereziniae LMG 1003]
Length = 622
Score = 337 bits (865), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 177/400 (44%), Positives = 253/400 (63%), Gaps = 17/400 (4%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F L E + KAL +G+T PT VQE +IPAA+ G+DL+VSSQTGSGKTAAF+LP L+
Sbjct: 5 FAEFSLDESLQKALESLGFTTPTPVQELSIPAALEGKDLLVSSQTGSGKTAAFLLPTLNA 64
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A +P KER++ QP +LV++PTRELA QV +
Sbjct: 65 LAGQDTFVPF---------------KERMKAV-TQPNILVISPTRELAQQVCQDAIAFVR 108
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N +I + L++DEAD
Sbjct: 109 HMKGVRVAAIMGGMPFGKQIQQL-KGAQVVVATPGRLLDLVNRRQIKLDSVDALIVDEAD 167
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLD+GF D+E I D +QT++FSAT + N+AE + DP + + + +
Sbjct: 168 RMLDLGFSEDLEAISDLALNRKQTLMFSATFAPRIINLAERMMNDPERIAIETGHSTNTD 227
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
ITQ++ + D HK +LL + L ++ V QAVVF +T+ D D++A+ L +G LHG
Sbjct: 228 ITQTLHWTDGFEHKKKLLTHWLNEEDVDQAVVFASTQEDTDMLAEELAEAGLSVVALHGA 287
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTGR
Sbjct: 288 MPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGR 347
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
AGR G A++L + ER I+ +E + + ++ + I G EP
Sbjct: 348 AGRTGKAITLATYRERGKIRALEDYLEARLSVSEIEGLEP 387
>gi|445421868|ref|ZP_21436173.1| DEAD/DEAH box helicase [Acinetobacter sp. WC-743]
gi|444757138|gb|ELW81669.1| DEAD/DEAH box helicase [Acinetobacter sp. WC-743]
Length = 622
Score = 337 bits (865), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 177/400 (44%), Positives = 253/400 (63%), Gaps = 17/400 (4%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F L E + KAL +G+T PT VQE +IPAA+ G+DL+VSSQTGSGKTAAF+LP L+
Sbjct: 5 FAEFSLDESLQKALESLGFTTPTPVQELSIPAALEGKDLLVSSQTGSGKTAAFLLPTLNA 64
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A +P KER++ QP +LV++PTRELA QV +
Sbjct: 65 LAGQDTFVPF---------------KERMKAV-TQPNILVISPTRELAQQVCQDAIAFVR 108
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N +I + L++DEAD
Sbjct: 109 HMKGVRVAAIMGGMPFGKQIQQL-KGAQVVVATPGRLLDLVNRRQIKLDSVDALIVDEAD 167
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLD+GF D+E I D +QT++FSAT + N+AE + DP + + + +
Sbjct: 168 RMLDLGFSEDLEAISDLALNRKQTLMFSATFAPRIINLAERMMNDPERIAIETGHSTNTD 227
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
ITQ++ + D HK +LL + L ++ V QAVVF +T+ D D++A+ L +G LHG
Sbjct: 228 ITQTLHWTDGFEHKKKLLTHWLNEEDVDQAVVFASTQEDTDMLAEELAEAGLSVVALHGA 287
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTGR
Sbjct: 288 MPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGR 347
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
AGR G A++L + ER I+ +E + + ++ + I G EP
Sbjct: 348 AGRTGKAITLATYRERGKIRALEDYLEARLSVSEIEGLEP 387
>gi|406035468|ref|ZP_11042832.1| ATP-dependent RNA helicase [Acinetobacter parvus DSM 16617 = CIP
108168]
Length = 657
Score = 337 bits (864), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 176/400 (44%), Positives = 256/400 (64%), Gaps = 17/400 (4%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F LHE + +AL +G+T PT VQEQAIPAA++G+DL+VSSQTGSGKTAAF+LP L+
Sbjct: 5 FAEFSLHETLQQALEGLGFTTPTPVQEQAIPAALAGKDLLVSSQTGSGKTAAFLLPTLNA 64
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A + + K+R++ QP +LV++PTRELA QV+ +
Sbjct: 65 LAGEE---------------AFVSFKDRMK-AVTQPTILVISPTRELAQQVSQDAIAFVR 108
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N +I ++ L++DEAD
Sbjct: 109 HMKGVRIAAIMGGMPFGKQIQQL-KGAQVVVATPGRLLDLVNRRQIKLDKVESLIVDEAD 167
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLD+GF D+E I + +QT++FSAT + +AE + DP + + + +
Sbjct: 168 RMLDLGFSEDLEAIGELAANRKQTLMFSATFADRIIRLAERMMNDPQRIAIETGHSTNTD 227
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
+TQ++ + D HK +LL + L D+ V QAVVF +T+ D D++A+ L +G LHG
Sbjct: 228 VTQTLHWTDGFEHKKKLLTHWLSDESVDQAVVFASTQEDTDMLAEELAEAGHSVVALHGA 287
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTGR
Sbjct: 288 MPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGR 347
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
AGR G AV+L + ER I+ +E + ++ + I G EP
Sbjct: 348 AGRTGQAVTLATYRERGKIRALEDYLDARLNVSEIEGLEP 387
>gi|319943535|ref|ZP_08017817.1| DEAD/DEAH box helicase family protein [Lautropia mirabilis ATCC
51599]
gi|319743350|gb|EFV95755.1| DEAD/DEAH box helicase family protein [Lautropia mirabilis ATCC
51599]
Length = 872
Score = 337 bits (863), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 177/404 (43%), Positives = 254/404 (62%), Gaps = 5/404 (1%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F +GL E +++AL ++ P+ VQ QAIP ++G DL+ S+ TG+GKTAAF+LPAL
Sbjct: 149 SFAELGLIEPLVQALQRLDIIHPSPVQAQAIPVLLAGNDLVASAPTGTGKTAAFLLPALQ 208
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP----RMLVLTPTRELALQVTAAT 117
A + + + ++ + + R +PA+P +LVLTPTRELA QVT +
Sbjct: 209 GVALNAQERAAEHHDAGDDDEDHRGKRGKGR-RPARPAFGPSVLVLTPTRELAQQVTRTS 267
Query: 118 ERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
+ + + I GG Y Q + L+ E+L+ATPGRLID + +GKI+ S L++LV
Sbjct: 268 HALSRLLPRTSTVCITGGSSYFHQARALAMPYEVLVATPGRLIDQLENGKIDLSRLKMLV 327
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
LDEADRMLDMGF D+ +I + P RQT+ F+AT+ V N+A+ + KDP L V E
Sbjct: 328 LDEADRMLDMGFSEDVFRIAEMLPTERQTVCFTATVSHDVRNLADKLLKDPQWLTVERSE 387
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+ I +++VD+ H+ +LL L D +GQA+VFTATKR A+ +++ L GF
Sbjct: 388 EALTPIDDHVVYVDNPGHRGQLLRACLNDTGLGQAIVFTATKRQAEELSEELQGEGFAVD 447
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
LHGD++Q R R L LR+G ++L+ATDVAARGIDV ++THV NY+LP+ EDYVHRI
Sbjct: 448 ALHGDMNQRERTRALNRLRQGECQVLIATDVAARGIDVSSLTHVINYELPRVAEDYVHRI 507
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
GRTGRAG +G A+S V + + ++KIE F + I + G E
Sbjct: 508 GRTGRAGASGQAISFVGREDVIPLRKIEHFLGRHIQVSEFPGLE 551
>gi|389703934|ref|ZP_10185728.1| ATP-dependent RNA helicase [Acinetobacter sp. HA]
gi|388611316|gb|EIM40420.1| ATP-dependent RNA helicase [Acinetobacter sp. HA]
Length = 623
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 176/400 (44%), Positives = 254/400 (63%), Gaps = 17/400 (4%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F LHE + +AL +G+T PT VQEQ+IPAA+ G+DL+VSSQTGSGKTAAF+LP L+
Sbjct: 5 FADFPLHETLQQALQALGFTAPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLNG 64
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A+ +P KER++ QP +LV++PTRELA QV +
Sbjct: 65 LATEDTFVPF---------------KERMKAV-TQPNILVISPTRELAQQVCQDAIAFVR 108
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N +I + L++DEAD
Sbjct: 109 HMKGVRIAAIMGGMPFGKQIQQL-KGAQVVVATPGRLLDLVNRRQIKLDKVDALIVDEAD 167
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLD+GF D+E I D +QT++FSAT + +AE + +P + + + +
Sbjct: 168 RMLDLGFSEDLEAIGDLAANRKQTLMFSATFAPRIITLAERMMNEPERIAIETGHSTNTD 227
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
ITQ++ + D HK +LL + L ++ V QAVVF +T+ D D++A+ L +G LHG
Sbjct: 228 ITQTLHWTDGFEHKKKLLTHWLNEEDVDQAVVFASTQEDTDMLAEELAEAGLSVVALHGA 287
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTGR
Sbjct: 288 MPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGR 347
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
AGR G A++L + ER I+ +E + ++ + I G EP
Sbjct: 348 AGRTGKAITLATYRERGKIRALEDYLDARLEVSEIEGLEP 387
>gi|340787676|ref|YP_004753141.1| ATP-dependent RNA helicase RhlE [Collimonas fungivorans Ter331]
gi|340552943|gb|AEK62318.1| ATP-dependent RNA helicase RhlE [Collimonas fungivorans Ter331]
Length = 448
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 182/407 (44%), Positives = 249/407 (61%), Gaps = 23/407 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL E +++A+ + GYT PT +Q QAIPA ++G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFSELGLSEAIVRAVTEHGYTTPTPIQTQAIPAVLAGGDLLAGAQTGTGKTAGFTLPVL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ ++S N + I R LVLTPTRELA QV + Y
Sbjct: 61 HRLSTSAT-------NPTGSQRPI--------------RALVLTPTRELAAQVEESVRLY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+K A+ I GG+ Q++LL +IL+ TPGRL+DHM G +N +H++IL+LDE
Sbjct: 100 GKYLKLTSAV-IFGGVGINPQIKLLKHGVDILVCTPGRLLDHMQQGTVNLNHVEILILDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI+KI+ P RQ +LFSAT + +A+N+ P +++V
Sbjct: 159 ADRMLDMGFIRDIKKILAVLPKKRQNLLFSATFSDEIKILADNLLNSPAMIEVARRNSTV 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q I VD K+ LL +L++ + Q +VFT TK A+ + ++L G +H
Sbjct: 219 EVIQQKIHPVDRD-RKHPLLAHLIKTHQWSQVLVFTRTKHGANKLVEQLEKDGISGMAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + G +++LVATD+AARGID+ + HV NYDLP PEDYVHRIGRT
Sbjct: 278 GNKSQSARTRALAEFKDGSLQVLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIR 407
GRAG G AVSLV E +K IE+ K+++P EVI GFEP R
Sbjct: 338 GRAGATGEAVSLVCVDEHQMLKDIEKLIKRELPKEVIAGFEPDPNAR 384
>gi|89900206|ref|YP_522677.1| DEAD/DEAH box helicase-like protein [Rhodoferax ferrireducens T118]
gi|89344943|gb|ABD69146.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118]
Length = 623
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 183/436 (41%), Positives = 260/436 (59%), Gaps = 39/436 (8%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGR----------DLIVSSQTGSGK 51
F ++GL +++A+ +G+T+PT VQ + IP A+ G DL+VSSQTGSGK
Sbjct: 53 GFVTLGLAPELIQAVKDLGFTQPTTVQLKTIPLAMQGHSASDDAARFIDLMVSSQTGSGK 112
Query: 52 TAAFMLPALHKF---------------------ASSKNKIPVMKKNLNQNNNKIYTHKER 90
TAAF+LP LH A++K + P + N +
Sbjct: 113 TAAFLLPVLHTLLTQMAQAEAKERSDFERAVADAAAKGEAPPKRAKRKDPTNPRH----- 167
Query: 91 LRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPE 150
F PA P L++ PTRELA QV + + ++ +I+GGMPY Q+ L +N
Sbjct: 168 --FAPAAPGALIVCPTRELAQQVAHDAIDLVQHCRGLRVANIVGGMPYQLQIAKL-QNAN 224
Query: 151 ILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFS 210
+++ATPGRL+D S +I +Q LV+DEADRMLD+GF +D+ +I T +QTM+FS
Sbjct: 225 LVVATPGRLLDLQRSMQIKLDQVQFLVVDEADRMLDLGFSDDLAEINQLTIERKQTMMFS 284
Query: 211 ATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVG 270
AT + +A + ++P L+++S ++K NI+Q + + D+ HK +LLD+ LRD +
Sbjct: 285 ATFAPRIQQLASRVMREPQRLQIDSPQEKHANISQKLFWADNAQHKRKLLDHWLRDTTIN 344
Query: 271 QAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAA 330
QA+VF +T+ + D +A+ L GF A LHG L Q RNR L LR+G+++ILVATDVAA
Sbjct: 345 QALVFASTQIECDGLANDLQQEGFSAVALHGALSQGLRNRRLMALRQGQVQILVATDVAA 404
Query: 331 RGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQ 390
RGIDVP +THVFN+ LP EDY HRIGRTGRAGR+G AV+ +R I IE +T Q
Sbjct: 405 RGIDVPTVTHVFNFGLPMKAEDYTHRIGRTGRAGRDGIAVTFAEFRDRRKIMDIEHYTHQ 464
Query: 391 QIPIEVINGFEPKKRI 406
Q+ E I G EP++R
Sbjct: 465 QLKGETIPGMEPQQRF 480
>gi|262377334|ref|ZP_06070558.1| II DNA/RNA helicase [Acinetobacter lwoffii SH145]
gi|262307787|gb|EEY88926.1| II DNA/RNA helicase [Acinetobacter lwoffii SH145]
Length = 624
Score = 335 bits (859), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 176/400 (44%), Positives = 254/400 (63%), Gaps = 17/400 (4%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F L E + +AL +G+T PT VQEQAIPAA+ G+DL+VSSQTGSGKTAAF+LP L+
Sbjct: 5 FADFSLDESLTQALDALGFTTPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLNA 64
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A N + + K+R++ QP +LV++PTRELA QV +
Sbjct: 65 LA---------------NQDTLVPFKDRMKAV-TQPNILVISPTRELAQQVCQDAIAFVR 108
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N +I + L++DEAD
Sbjct: 109 HMKGVRIAAIMGGMPFGKQIQQL-KGAQVVVATPGRLLDLVNRRQIKLDKVDALIVDEAD 167
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLD+GF D+E I + +QT++FSAT + +AE + DP+ + + + +
Sbjct: 168 RMLDLGFSEDLEAIGELAANRKQTLMFSATFAPRIITLAERMMNDPMRISIETGHSTNTD 227
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
ITQ++ + D HK +LL + L ++ V QAVVF +T+ D D++A+ L +G LHG
Sbjct: 228 ITQTLHWTDGFEHKKKLLTHWLNEEDVDQAVVFASTQEDTDMLAEELAEAGLSVVALHGA 287
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTGR
Sbjct: 288 MPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGR 347
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
AGR G A++L + ER I+ +E F ++ + I G EP
Sbjct: 348 AGRTGKAITLATYRERGKIRALEDFLDARLNVSEIEGLEP 387
>gi|337278853|ref|YP_004618324.1| ATP-dependent RNA helicase [Ramlibacter tataouinensis TTB310]
gi|334729929|gb|AEG92305.1| Candidate ATP-dependent RNA helicase [Ramlibacter tataouinensis
TTB310]
Length = 549
Score = 335 bits (859), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 186/435 (42%), Positives = 261/435 (60%), Gaps = 41/435 (9%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAI-------SGR--DLIVSSQTGSGKT 52
F +GL +++A+ +G+T+PT VQ+QAIP A+ S R DL+VSSQTGSGKT
Sbjct: 36 GFLKLGLAPELIRAVEDLGFTQPTAVQDQAIPLAMDSAEEGASSRFIDLMVSSQTGSGKT 95
Query: 53 AAFMLPALHKF---------------------ASSKNKIPVMKKNLNQNNNKIYTHKERL 91
AAF+LP LH A+++ + P +K N + +
Sbjct: 96 AAFLLPVLHTLLKLQAQAEEQERAEQQRLADEAAARGEAPPKRKRRNPTDPR-------- 147
Query: 92 RFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLS-RNPE 150
FK A P L+L PTRELA QV + K ++ +++GGMPY QMQ+ +N
Sbjct: 148 NFKAAAPGALILCPTRELAQQVAHDAIDLVKHCKGLRIANVVGGMPY--QMQIARLQNAN 205
Query: 151 ILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFS 210
+++ATPGRL+D S +I ++ LV+DEADRMLD+GF +D+ +I T QTM+FS
Sbjct: 206 LVVATPGRLLDLQRSQQIKLDQVKFLVVDEADRMLDLGFADDLAEINQLTIERHQTMMFS 265
Query: 211 ATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVG 270
AT + +A + + P ++++S ++K NI Q + + D+ HK ++LD+ LRD +
Sbjct: 266 ATFAPRIQQLAARVMRQPQKVQIDSPQEKHANIQQVLFWADNAQHKRKMLDHWLRDTTIN 325
Query: 271 QAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAA 330
QA+VF +T+ + D +A+ L GF A LHG L Q RNR L LR G+++ILVATDVAA
Sbjct: 326 QAIVFASTQIECDGLANDLQQEGFDAVALHGALSQGLRNRRLMALRNGQVQILVATDVAA 385
Query: 331 RGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQ 390
RGIDVP ITHVFN+ LP EDY HRIGRTGRAGR+G AV+ +R I IE +TKQ
Sbjct: 386 RGIDVPTITHVFNFGLPMKSEDYTHRIGRTGRAGRDGLAVTFAEFRDRFKIFDIEAYTKQ 445
Query: 391 QIPIEVINGFEPKKR 405
EV+ G EP++R
Sbjct: 446 PFKAEVVPGLEPQQR 460
>gi|398808968|ref|ZP_10567824.1| DNA/RNA helicase, superfamily II [Variovorax sp. CF313]
gi|398086549|gb|EJL77163.1| DNA/RNA helicase, superfamily II [Variovorax sp. CF313]
Length = 636
Score = 334 bits (857), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 181/437 (41%), Positives = 261/437 (59%), Gaps = 41/437 (9%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGR----------DLIVSSQTGSGK 51
F +GL ++ A+ +G+T+PT VQE+ IP A+ + DL+VSSQTGSGK
Sbjct: 56 GFIKLGLAPELIAAVADLGFTQPTTVQEKVIPIAMGEQEGAAQTARFVDLMVSSQTGSGK 115
Query: 52 TAAFMLPALHKF----------------------ASSKNKIPVMKKNLNQNNNKIYTHKE 89
TAAF+LP LH A+ +P K + N +
Sbjct: 116 TAAFLLPVLHTLLKRQAEAEAEAKAEFQRLAAEAAARGEAVPKKPKRKDPTNAR------ 169
Query: 90 RLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNP 149
FKPA P L+L PTRELA QV + + ++ +++GGMPY Q+ L +N
Sbjct: 170 --HFKPATPGALILCPTRELAQQVAHDAIELVRHCRGLRIANVVGGMPYQLQIARL-QNA 226
Query: 150 EILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLF 209
++++ATPGRL+D S +I ++ LV+DEADRMLD+GF +D+ ++ T +QTM+F
Sbjct: 227 DLVVATPGRLLDLQRSSQIKLDQVKFLVVDEADRMLDLGFADDLAEVNQLTIERQQTMMF 286
Query: 210 SATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRV 269
SAT + +A+ + ++P + ++S ++K NI Q + + D+ HK +LLD+ LRD +
Sbjct: 287 SATFAPRIQQLAQRVMREPQRVTIDSPQEKHANIKQVLFWADNSQHKRKLLDHWLRDTTI 346
Query: 270 GQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVA 329
QA+VF +T+ + D +A+ L GF A LHG L Q RNR L LR+G+++ILVATDVA
Sbjct: 347 NQAIVFASTQVECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRQGQVQILVATDVA 406
Query: 330 ARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTK 389
ARGIDVP ITHVFN+ LP EDY HRIGRTGRAGR+G AV+ +R I IE +++
Sbjct: 407 ARGIDVPTITHVFNFGLPMKAEDYTHRIGRTGRAGRDGIAVTFAEFRDRRKIMDIEHYSR 466
Query: 390 QQIPIEVINGFEPKKRI 406
QQ EV+ G EP++R+
Sbjct: 467 QQFKAEVVPGMEPQQRM 483
>gi|239814491|ref|YP_002943401.1| DEAD/DEAH box helicase domain-containing protein [Variovorax
paradoxus S110]
gi|239801068|gb|ACS18135.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
Length = 661
Score = 334 bits (857), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 183/448 (40%), Positives = 265/448 (59%), Gaps = 44/448 (9%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGR----------DLIVSSQTGSGK 51
F +GL ++ A+ +G+T+PT VQ++ IP A+ G DL+VSSQTGSGK
Sbjct: 77 GFIKLGLAPELIAAVADLGFTQPTTVQDKVIPLAMGGEAGQDGKARFVDLMVSSQTGSGK 136
Query: 52 TAAFMLPALHKF----------------------ASSKNKIPVMKKNLNQNNNKIYTHKE 89
TAAF+LP LH A+ +P K + N +
Sbjct: 137 TAAFLLPVLHTLLKRQAEAEAQAKAEFQRLAAEAAARGEAVPKKPKRKDPTNAR------ 190
Query: 90 RLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNP 149
FK A P L+L PTRELA QV + + ++ +++GGMPY Q+ L +N
Sbjct: 191 --HFKAATPGALILCPTRELAQQVAHDAIELVRHCRGLRVANVVGGMPYQLQIAKL-QNA 247
Query: 150 EILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLF 209
++++ATPGRL+D S +I ++ LV+DEADRMLD+GF +D+ ++ T +QTM+F
Sbjct: 248 DLVVATPGRLLDLQRSMQIKLDQVKFLVVDEADRMLDLGFADDLAEVNQLTIERQQTMMF 307
Query: 210 SATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRV 269
SAT + +A+ + ++P + ++S ++K NI QS+ + D+ HK +LLD+ LRD +
Sbjct: 308 SATFAPRIQQLAQRVMREPQRITIDSPQEKHANIKQSLYWADNSQHKRKLLDHWLRDTSI 367
Query: 270 GQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVA 329
QA+VF +T+ + D +A+ L GF A LHG L Q RNR L LR+G+++ILVATDVA
Sbjct: 368 NQAIVFASTQVECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRQGQVQILVATDVA 427
Query: 330 ARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTK 389
ARGIDVP ITHVFN+ LP EDY HRIGRTGRAGR+G A++ +R I IE++++
Sbjct: 428 ARGIDVPTITHVFNFGLPMKAEDYTHRIGRTGRAGRDGLAITFAEFRDRRKIMDIEQYSR 487
Query: 390 QQIPIEVINGFEPKKRI---RTYYSRYR 414
QQ EV+ G EP++R+ R YR
Sbjct: 488 QQFKAEVVAGLEPQQRMPQSRPPMGEYR 515
>gi|308446500|ref|XP_003087194.1| hypothetical protein CRE_11658 [Caenorhabditis remanei]
gi|308260015|gb|EFP03968.1| hypothetical protein CRE_11658 [Caenorhabditis remanei]
Length = 526
Score = 334 bits (856), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 175/400 (43%), Positives = 253/400 (63%), Gaps = 17/400 (4%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F L E + KAL +G+T PT VQE +IPAA+ G+DL+VSSQTGSGKTAAF+LP L+
Sbjct: 5 FAEFSLDESLQKALESLGFTTPTPVQELSIPAALEGKDLLVSSQTGSGKTAAFLLPTLNA 64
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A +P K+R++ QP +LV++PTRELA QV +
Sbjct: 65 LAGQDTFVPF---------------KDRMKAV-TQPNILVISPTRELAQQVCQDAIAFVR 108
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N +I + L++DEAD
Sbjct: 109 HMKGVRVAAIMGGMPFGKQIQQL-KGAQVVVATPGRLLDLVNRRQIKLDLVDALIVDEAD 167
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLD+GF D+E I D +QT++FSAT + N+AE + +P + + + +
Sbjct: 168 RMLDLGFSEDLEAISDLALNRKQTLMFSATFAPRIINLAERMMNEPERIAIETGHSTNTD 227
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
ITQ++ + D HK +LL + L ++ V QAVVF +T+ D D++A+ L +G LHG
Sbjct: 228 ITQTLHWTDGFEHKKKLLTHWLNEEDVDQAVVFASTQEDTDMLAEELAEAGLSVVALHGA 287
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTGR
Sbjct: 288 MPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGR 347
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
AGR G A++L + ER I+ +E + + ++ + I G EP
Sbjct: 348 AGRTGKAITLATYRERGKIRALEDYLEARLSVSEIEGLEP 387
>gi|409405536|ref|ZP_11253998.1| ATP-dependent RNA helicase [Herbaspirillum sp. GW103]
gi|386434085|gb|EIJ46910.1| ATP-dependent RNA helicase [Herbaspirillum sp. GW103]
Length = 513
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 179/402 (44%), Positives = 250/402 (62%), Gaps = 23/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F ++GL + +++A+ + GYT PT +Q QA+PA +SG DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFSALGLSDEIVRAVSEQGYTSPTPIQAQAVPAVLSGGDLLAGAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ ++ + KI H R L+L PTRELA QV + +Y
Sbjct: 61 QRLSAMPRQ-------------KINGHLPI--------RALILAPTRELAAQVEESVRQY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ + + I GG+ Q+ LL R +IL+ATPGRL+DHM G +N H+QILVLDE
Sbjct: 100 GKYLP-LTSACIFGGVGIHPQIALLKRGVDILVATPGRLLDHMQQGTVNLQHIQILVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI K++ A P RQ +LFSAT + +A+++ +P +++V
Sbjct: 159 ADRMLDMGFIRDIRKVLAALPPKRQNLLFSATFADEIKKLADSLLNNPALIEVARRNSTV 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q I VD K+ +L +L++ + Q +VFT TK A+ + ++L G A +H
Sbjct: 219 EVIAQKIHPVDRD-KKHPMLAHLIKTHQWKQVLVFTRTKHGANKLVEQLARDGITAMAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR + L + G++ L+ATD+AARGID+ + HV NYDLP PEDYVHRIGRT
Sbjct: 278 GNKSQSARTKALAEFKDGKLTALIATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G AVSLV ER + IERF K++IP+EVI GFEP
Sbjct: 338 GRAGATGEAVSLVCVDERDLLHDIERFIKREIPVEVIAGFEP 379
>gi|300311049|ref|YP_003775141.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1]
gi|300073834|gb|ADJ63233.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae
SmR1]
Length = 520
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 179/402 (44%), Positives = 250/402 (62%), Gaps = 23/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F ++GL + +++A+ + GYT PT +Q QA+PA +SG DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFSALGLSDEIVRAVSEQGYTSPTPIQAQAVPAVLSGGDLLAGAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ ++ + KI H R L+L PTRELA QV + +Y
Sbjct: 61 QRLSAMPRQ-------------KINGH--------VPIRALILAPTRELAAQVEESVRQY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ + + I GG+ Q+ LL R +IL+ATPGRL+DHM G +N H+QILVLDE
Sbjct: 100 GKYLP-LTSACIFGGVGINPQITLLKRGVDILVATPGRLLDHMQQGTVNLQHIQILVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI K++ A P RQ +LFSAT + +A+++ +P +++V
Sbjct: 159 ADRMLDMGFIRDIRKVLAALPPKRQNLLFSATFADEIKKLADSLLNNPALIEVARRNSTV 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q I VD K+ +L +L++ + Q +VFT TK A+ + ++L G A +H
Sbjct: 219 EVIAQKIHPVDRD-KKHPMLAHLIKTHQWKQVLVFTRTKHGANKLVEQLGRDGITAMAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR + L + G++ L+ATD+AARGID+ + HV NYDLP PEDYVHRIGRT
Sbjct: 278 GNKSQSARTKALAEFKDGKLTALIATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G AVSLV ER + IERF K++IP+EVI GFEP
Sbjct: 338 GRAGATGEAVSLVCIDERDLLHDIERFIKREIPVEVIAGFEP 379
>gi|333912931|ref|YP_004486663.1| DEAD/DEAH box helicase domain-containing protein [Delftia sp.
Cs1-4]
gi|333743131|gb|AEF88308.1| DEAD/DEAH box helicase domain protein [Delftia sp. Cs1-4]
Length = 684
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 186/426 (43%), Positives = 258/426 (60%), Gaps = 24/426 (5%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRD-----LIVSSQTGSGKTAAFML 57
F +GL E +++A+ +GYT+PT VQ QAIP A+ G D L+VSSQTGSGKTAAF+L
Sbjct: 67 FIELGLAEELVRAVADLGYTQPTAVQAQAIPLAMGGDDQAFIDLMVSSQTGSGKTAAFLL 126
Query: 58 PALHKFASSK-NKIPVMKKNLNQNNNKIY-----THKERLR--------FKPAQPRMLVL 103
P LH K ++ ++ ++ + T K R FK A P L+L
Sbjct: 127 PVLHTLIQQKADEEAAIRAEYDRQCAEATASGQPTPKRNKRKDPTNPRNFKAAVPGALIL 186
Query: 104 TPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHM 163
PTRELA QV + + I+ +++GGMPY Q+ L +N +++ATPGRL+D
Sbjct: 187 CPTRELAQQVAHDAIELVKHCRGIRIANVVGGMPYQLQIAKL-QNANLVVATPGRLLDLQ 245
Query: 164 NSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAEN 223
S +I +Q LV+DEADRMLD+GF +D+ ++ D T +QTM+FSAT + +A
Sbjct: 246 RSMQIKLDQVQFLVVDEADRMLDLGFSDDLAEVNDLTAQRKQTMMFSATFAPRIQQLAMR 305
Query: 224 ITKDPLI----LKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATK 279
+ D + +++ ++K +I Q + + D+ HK +LLD+ LRD + QA+VF +T+
Sbjct: 306 VMHDGGSGVKKVTIDTPQEKHASIKQVLFWADNSQHKRKLLDHWLRDTTINQAIVFASTQ 365
Query: 280 RDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAIT 339
+ D +A+ L GF A LHG L Q RNR L LR G++++LVATDVAARGIDVP IT
Sbjct: 366 VECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRSGQVQVLVATDVAARGIDVPTIT 425
Query: 340 HVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVING 399
HVFNY LP EDY HRIGRTGRAGR G AV+ +R I IE +++QQ EVI G
Sbjct: 426 HVFNYGLPMKAEDYTHRIGRTGRAGREGVAVTFAEFRDRRRIFDIEAYSRQQFKAEVIPG 485
Query: 400 FEPKKR 405
EP +R
Sbjct: 486 LEPAQR 491
>gi|152981148|ref|YP_001352987.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
gi|151281225|gb|ABR89635.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
Length = 448
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 180/402 (44%), Positives = 245/402 (60%), Gaps = 21/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL E +++A+ + GYT PT +Q QAIPA ++G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFTDLGLAEGIVRAVTESGYTNPTPIQAQAIPAVLAGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ A+S H +P R LVLTPTRELA QV + Y
Sbjct: 61 HRLATSGTP-----------------HASASAQRPI--RALVLTPTRELAAQVEESVRTY 101
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ A+ I GG+ Q+++L +IL+ATPGRL+DHM G +N +H+QILVLDE
Sbjct: 102 GKYLNLNSAV-IFGGVGINPQIKMLKHGVDILVATPGRLLDHMQQGTVNLNHIQILVLDE 160
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI +++ A P RQ +LFSAT + +A+ + P ++V
Sbjct: 161 ADRMLDMGFIKDIRRVLAALPKNRQNLLFSATFSNEIKALADGLLNSPATIEVARRNSTV 220
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q I VD K+ +L +L++ Q +VFT TK A+ + ++L G +H
Sbjct: 221 EIIEQKIHPVDRD-KKHPMLAHLIKSNNWSQVLVFTRTKHGANKLVEQLEKDGISGMAIH 279
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + G +++LVATD+AARGID+ + HV NYDLP PEDYVHRIGRT
Sbjct: 280 GNKSQSARTRALSEFKDGSLQVLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRT 339
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G AVSLV E +K IE+ K+++P EVI GFEP
Sbjct: 340 GRAGATGEAVSLVCVDELEMLKDIEKLIKRKLPSEVIPGFEP 381
>gi|121604377|ref|YP_981706.1| DEAD/DEAH box helicase [Polaromonas naphthalenivorans CJ2]
gi|120593346|gb|ABM36785.1| DEAD/DEAH box helicase domain protein [Polaromonas
naphthalenivorans CJ2]
Length = 649
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 186/447 (41%), Positives = 263/447 (58%), Gaps = 41/447 (9%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISG----------RDLIVSSQTGSGK 51
F +GL + +L+A+ +G+T+PT VQ IP A+ DL+VSSQTGSGK
Sbjct: 51 GFVKLGLAKELLQAVADMGFTQPTSVQMATIPKAMQALDADPKAPKFTDLLVSSQTGSGK 110
Query: 52 TAAFMLPALHKF---------------------ASSKNKIPVMKKNLNQNNNKIYTHKER 90
TAAF+LP LH A ++ + P+ K N
Sbjct: 111 TAAFLLPVLHTLLKQQEEAERNERAEFERLSAEAVARGEAPLKKPKRKDPTN-------- 162
Query: 91 LR-FKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNP 149
+R FK A P L+L PTRELA QV A + + ++ +++GG+PY Q+ L +N
Sbjct: 163 MRNFKAATPGALILCPTRELAQQVCADAIDLVRHCRGLRVANVVGGIPYQLQIAKL-QNA 221
Query: 150 EILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLF 209
++++ATPGRL+D S +I +Q LV+DEADRMLD+GF +D+ ++ T +QTM+F
Sbjct: 222 DLVVATPGRLLDLQRSMQIKLDQVQFLVVDEADRMLDLGFADDLTEVNQLTIERKQTMMF 281
Query: 210 SATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRV 269
SAT + +A + + P ++++S +K +ITQS+L+ D++ HK +LLD+ LRD +
Sbjct: 282 SATFAPRIMQLATRVMRQPQRVEIDSPHEKHASITQSLLWADNMTHKRKLLDHWLRDTTI 341
Query: 270 GQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVA 329
QA+VF T+ + D +A+ L GF A LHG L Q RNR L R GR++ILVATDVA
Sbjct: 342 NQAIVFACTQVECDGLANDLVQEGFSAVALHGALGQGLRNRRLMAFRDGRVQILVATDVA 401
Query: 330 ARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTK 389
ARG+DVP ITHV NY LP EDYVHRIGRTGRAGR G A+++ +R I+ IE +T+
Sbjct: 402 ARGLDVPTITHVINYGLPMKAEDYVHRIGRTGRAGREGQAITIAEFRDRRKIQDIEHYTQ 461
Query: 390 QQIPIEVINGFEPKKRIRTYYSRYRFN 416
Q + VI G EP++R R R N
Sbjct: 462 QNLKASVIAGLEPQQRFAPTSERPRGN 488
>gi|319792321|ref|YP_004153961.1| dead/deah box helicase domain-containing protein [Variovorax
paradoxus EPS]
gi|315594784|gb|ADU35850.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus EPS]
Length = 667
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 182/448 (40%), Positives = 264/448 (58%), Gaps = 44/448 (9%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGR----------DLIVSSQTGSGK 51
F +GL ++ A+ +G+T+PT VQ++ IP A+ G DL+VSSQTGSGK
Sbjct: 78 GFIRLGLAPELIAAVADLGFTQPTTVQDKVIPLAMGGEAGQDGKARFVDLMVSSQTGSGK 137
Query: 52 TAAFMLPALHKF----------------------ASSKNKIPVMKKNLNQNNNKIYTHKE 89
TAAF+LP LH A+ P K + N +
Sbjct: 138 TAAFLLPVLHTLLKRQAEAEAEAKAEFQRLAAEAAARGEAAPKKPKRKDPTNTR------ 191
Query: 90 RLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNP 149
FK A P L+L PTRELA QV + + ++ +++GGMPY Q+ L +N
Sbjct: 192 --HFKAATPGALILCPTRELAQQVAHDAIELVRHCRGLRIANVVGGMPYQLQIAKL-QNA 248
Query: 150 EILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLF 209
++++ATPGRL+D S ++ ++ LV+DEADRMLD+GF +D+ ++ T +QTM+F
Sbjct: 249 DLVVATPGRLLDLQRSQQLKLDQVKFLVVDEADRMLDLGFSDDLAEVNQLTIERQQTMMF 308
Query: 210 SATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRV 269
SAT + +A+ + ++P + ++S ++K NI QS+ + D+ HK +LLD+ LRD +
Sbjct: 309 SATFAPRIQQLAQRVMREPQRVTIDSPQEKHANIKQSLYWADNSQHKRKLLDHWLRDTSI 368
Query: 270 GQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVA 329
QA+VF +T+ + D +A+ L GF A LHG L Q RNR L LR+G+++ILVATDVA
Sbjct: 369 NQAIVFASTQVECDGLANDLQQEGFSAVALHGALSQGLRNRRLMALRQGQVQILVATDVA 428
Query: 330 ARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTK 389
ARGIDVP ITHVFN+ LP EDY HRIGRTGRAGR+G A++ +R I IE++++
Sbjct: 429 ARGIDVPTITHVFNFGLPMKAEDYTHRIGRTGRAGRDGLAITFAEFRDRRKIMDIEQYSR 488
Query: 390 QQIPIEVINGFEPKKRI---RTYYSRYR 414
QQ EV+ G EP++R+ R YR
Sbjct: 489 QQFKAEVVAGLEPQQRMPQSRPPMGEYR 516
>gi|160900768|ref|YP_001566350.1| DEAD/DEAH box helicase [Delftia acidovorans SPH-1]
gi|160366352|gb|ABX37965.1| DEAD/DEAH box helicase domain protein [Delftia acidovorans SPH-1]
Length = 707
Score = 331 bits (849), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 185/426 (43%), Positives = 257/426 (60%), Gaps = 24/426 (5%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRD-----LIVSSQTGSGKTAAFML 57
F +GL E +++A+ +GYT+PT VQ QAIP A+ D L+VSSQTGSGKTAAF+L
Sbjct: 90 FIELGLAEELVRAVADLGYTQPTAVQAQAIPLAMGSDDQAFIDLMVSSQTGSGKTAAFLL 149
Query: 58 PALHKFASSK-NKIPVMKKNLNQNNNKIY-----THKERLR--------FKPAQPRMLVL 103
P LH K ++ ++ ++ + T K R FK A P L+L
Sbjct: 150 PVLHTLIQQKADEEAAIRAEYDRQCAEATASGQPTPKRNKRKDPTNPRNFKAAVPGALIL 209
Query: 104 TPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHM 163
PTRELA QV + + I+ +++GGMPY Q+ L +N +++ATPGRL+D
Sbjct: 210 CPTRELAQQVAHDAIELVKHCRGIRIANVVGGMPYQLQIAKL-QNANLVVATPGRLLDLQ 268
Query: 164 NSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAEN 223
S +I +Q LV+DEADRMLD+GF +D+ ++ D T +QTM+FSAT + +A
Sbjct: 269 RSMQIKLDQVQFLVVDEADRMLDLGFSDDLAEVNDLTAQRKQTMMFSATFAPRIQQLAMR 328
Query: 224 ITKDPLI----LKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATK 279
+ D + +++ ++K +I Q + + D+ HK +LLD+ LRD + QA+VF +T+
Sbjct: 329 VMHDGGSGVKKVTIDTPQEKHASIKQVLFWADNSQHKRKLLDHWLRDTTINQAIVFASTQ 388
Query: 280 RDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAIT 339
+ D +A+ L GF A LHG L Q RNR L LR G++++LVATDVAARGIDVP IT
Sbjct: 389 VECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRSGQVQVLVATDVAARGIDVPTIT 448
Query: 340 HVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVING 399
HVFNY LP EDY HRIGRTGRAGR G AV+ +R I IE +++QQ EVI G
Sbjct: 449 HVFNYGLPMKAEDYTHRIGRTGRAGREGVAVTFAEFRDRRRIFDIEAYSRQQFKAEVIPG 508
Query: 400 FEPKKR 405
EP +R
Sbjct: 509 LEPAQR 514
>gi|350272013|ref|YP_004883321.1| putative RNA helicase [Oscillibacter valericigenes Sjm18-20]
gi|348596855|dbj|BAL00816.1| putative RNA helicase [Oscillibacter valericigenes Sjm18-20]
Length = 435
Score = 331 bits (848), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 175/395 (44%), Positives = 243/395 (61%), Gaps = 29/395 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M FK + L +LKA+ + GYT PT +Q++AIP + RDLI +QTG+GKTAAF LP L
Sbjct: 1 MTFKELNLTAPILKAVDRQGYTTPTPIQQKAIPILLQKRDLIGCAQTGTGKTAAFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
AS + K + L+LTPTRELA+Q+ E Y
Sbjct: 61 QNLASERRK---------------------------GIKALILTPTRELAIQIQENFEHY 93
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ ++ I GG+ + Q++ L R +IL+ATPGRL D +N G ++ S +++ VLDE
Sbjct: 94 GTHLP-LRCTVIFGGVSQVPQVERLRRGVDILIATPGRLCDLINQGYVDISQIEVFVLDE 152
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI D++K+++A P RQT+LFSAT+ + +A I DP+ +KV+ +
Sbjct: 153 ADRMLDMGFIRDVKKVLNALPKKRQTLLFSATMPKEIEVLANTILHDPVTVKVDPVTSTA 212
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+I Q + +D +K RLL LLR + VG A+VFT TK AD + L +G +A +H
Sbjct: 213 SSIHQHVYLIDK-GNKRRLLAKLLRGREVGSALVFTRTKHAADKVVKELAETGMVAMAIH 271
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ QNAR L+ + G IKILVATD+AARGID+P ++HVFNY+LP PE Y+HRIGRT
Sbjct: 272 GNKSQNARQTALKRFKSGDIKILVATDIAARGIDIPELSHVFNYELPNEPETYIHRIGRT 331
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIE 395
GRAG G A+S ++ E +K IE+ Q IP E
Sbjct: 332 GRAGLGGVAISFCDYDEIPYLKDIEKLMGQTIPEE 366
>gi|330818246|ref|YP_004361951.1| DEAD/DEAH box helicase [Burkholderia gladioli BSR3]
gi|327370639|gb|AEA61995.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
gladioli BSR3]
Length = 505
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 178/402 (44%), Positives = 250/402 (62%), Gaps = 23/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ ++GYT+PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFASLGLAEPLVRAVNELGYTEPTPIQTQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ +S K+ + R L+LTPTRELA QV + Y
Sbjct: 61 QRLNASTAAQAGGKRAV---------------------RALILTPTRELAAQVEESVRAY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+K +++ + GG+ Q+ L R +I++ATPGRL+DHM I+ S L ILVLDE
Sbjct: 100 GKYLK-LRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDVSQLDILVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + +A+++ P +++V
Sbjct: 159 ADRMLDMGFIHDIKRVLARLPAKRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTA 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q I VD K LL +L+R+ Q +VFT TK A+ +A++L G A +H
Sbjct: 219 ETIAQKIYPVDRD-RKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLGKDGISALAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + G +++LVATD+AARGID+ + HV NY+LP PEDYVHRIGRT
Sbjct: 278 GNKSQSARTRALTEFKAGTLQVLVATDIAARGIDIDQLPHVVNYELPNVPEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG NG AVSLV E+ ++ IE+ K++IP EVI GFEP
Sbjct: 338 GRAGANGEAVSLVCVDEKQLLRDIEKLIKREIPQEVIAGFEP 379
>gi|300722435|ref|YP_003711723.1| ATP-dependent RNA helicase with P-loop hydrolase domain
[Xenorhabdus nematophila ATCC 19061]
gi|297628940|emb|CBJ89523.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
[Xenorhabdus nematophila ATCC 19061]
Length = 498
Score = 330 bits (845), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 178/409 (43%), Positives = 249/409 (60%), Gaps = 26/409 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
MNF+S+GL +L+A+ + GY +PT +Q+QAIP +SG+DL+ S+QTG+GKTA F LP L
Sbjct: 1 MNFESLGLKADILRAVEEQGYAEPTPIQQQAIPVVLSGKDLLASAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP-RMLVLTPTRELALQVTAATER 119
+ + S ++ K +P R L+LTPTRELA QV
Sbjct: 61 QRLSESPTQV-----------------------KGRRPVRALILTPTRELAAQVGENVHN 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y Y+K +++ + GG+ QM L +IL+ATPGRL+D + ++ SH++IL+LD
Sbjct: 98 YSKYLK-LRSFVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVDLSHVEILILD 156
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DI +I++ P RQ +LFSAT + N+A + DP+ ++V
Sbjct: 157 EADRMLDMGFIHDIRRILNKLPAKRQNLLFSATFSDEIKNLANKLLNDPVSVEVARRNSA 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+ I QSI FVD K LL Y++ + Q +VFT TK A+ +A+ LN G AA +
Sbjct: 217 SEQIAQSIHFVDK-KRKGELLSYMIGSQNWQQVLVFTRTKHGANKLAELLNKDGVTAAAI 275
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HG+ Q AR R L + + G+I+ LVATD+AARG+D+ + HV NY+LP EDYVHRIGR
Sbjct: 276 HGNKSQGARTRALADFKSGQIRALVATDIAARGLDIDQLPHVVNYELPNVAEDYVHRIGR 335
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
TGRA G A+SLV E +K IER K++IP I G+EP I+
Sbjct: 336 TGRADATGQAISLVCVDEHKLLKDIERLLKREIPRIAIQGYEPDPSIKA 384
>gi|330826208|ref|YP_004389511.1| DEAD/DEAH box helicase [Alicycliphilus denitrificans K601]
gi|329311580|gb|AEB85995.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
K601]
Length = 590
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 186/432 (43%), Positives = 259/432 (59%), Gaps = 30/432 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIP-----AAISGR--DLIVSSQTGSGKTAA 54
F +GL +++A+ +GYT+PT VQE+AIP A ++GR DL+VSSQTGSGKTAA
Sbjct: 32 GFVRLGLAPELVQAVADLGYTQPTAVQEKAIPLAMGAADVAGRFIDLMVSSQTGSGKTAA 91
Query: 55 FMLPALHKFASSKNKIPVMKKNL----------------NQNNNKIYTHKERLRFKPAQP 98
F+LP LH + + ++ K TH FK A P
Sbjct: 92 FLLPVLHTLIQQQADADAAARAEFERAAADAAARGEAPPKRSKRKNPTHPRN--FKAATP 149
Query: 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGR 158
LVL PTRELA QV + K ++ +++GGMPY Q+ L +N +++ATPGR
Sbjct: 150 GALVLCPTRELAQQVAHDAIELVKHCKGLRIANVVGGMPYQLQIARL-QNANLVVATPGR 208
Query: 159 LIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVG 218
L+D S +I +Q LV+DEADRMLD+GF +D+ +I T +QTM+FSAT +
Sbjct: 209 LLDLQRSMQIKLDQVQFLVVDEADRMLDLGFSDDLAEINQLTSERKQTMMFSATFAPRIQ 268
Query: 219 NMAENITKDPLI----LKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVV 274
+A + + +++++ ++K NI Q + + D+ HK +LLD+ LRD +GQA+V
Sbjct: 269 QLAMRVMHEGGASVKKVQIDTPQEKHANIKQMLYWADNAQHKRKLLDHWLRDASIGQAIV 328
Query: 275 FTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGID 334
F +T+ + D +A+ L GF A LHG L Q RNR L LR G+++ILVATDVAARGID
Sbjct: 329 FASTQVECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGID 388
Query: 335 VPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
VP+ITHVFN+ LP EDY HRIGRTGRAGR+G AV+ +R I IE +++QQ
Sbjct: 389 VPSITHVFNFGLPMKAEDYTHRIGRTGRAGRDGLAVTFAEFRDRRKIFDIEGYSRQQFKA 448
Query: 395 EVINGFEPKKRI 406
EV+ G EP +R
Sbjct: 449 EVVAGLEPTQRF 460
>gi|260220807|emb|CBA28741.1| hypothetical protein Csp_A08660 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 652
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 184/435 (42%), Positives = 256/435 (58%), Gaps = 40/435 (9%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGR---------DLIVSSQTGSGKT 52
F +GL +++A +GYT+PT VQ++AIP A++G DL+VSSQTGSGKT
Sbjct: 59 GFVELGLAPALVQACKDLGYTQPTTVQQKAIPLAMAGVGSEKAGKFVDLMVSSQTGSGKT 118
Query: 53 AAFMLPALHKF----------------------ASSKNKIPVMKKNLNQNNNKIYTHKER 90
AAF+LP LH A+ P K + N +
Sbjct: 119 AAFLLPVLHTLLTQQAEAEEAERAEYEQACADAAAKGEPAPKRAKRKDPTNPR------- 171
Query: 91 LRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPE 150
FK P L++ PTRELA QV + + ++ +I+GGMPY Q+ L +N
Sbjct: 172 -NFKAPTPGALIVCPTRELAQQVAHDAIDLVQHCRGLRVANIVGGMPYQLQIAKL-QNAN 229
Query: 151 ILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFS 210
+++ATPGRL+D S +I +Q LV+DEADRMLD+GF +D+ +I T +QTM+FS
Sbjct: 230 LVVATPGRLLDLQRSMQIKLDQVQFLVVDEADRMLDLGFADDLAEINQLTIDRKQTMMFS 289
Query: 211 ATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVG 270
AT + +A + ++P + ++S ++K NI Q + + D+ HK +LLD+ LRD +
Sbjct: 290 ATFAPRIQQLAARVMREPQRVTIDSPQEKHANIKQVLFWADNAQHKRKLLDHWLRDTTIN 349
Query: 271 QAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAA 330
QAVVF +T+ + D +A+ L GF A LHG L Q RNR L LR+G+++ILVATDVAA
Sbjct: 350 QAVVFASTQIECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRQGQVQILVATDVAA 409
Query: 331 RGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQ 390
RGIDVP ITHVFN+ LP EDY HRIGRTGRAGR+G AV+ +R I IE +++Q
Sbjct: 410 RGIDVPTITHVFNFGLPMKAEDYTHRIGRTGRAGRDGLAVTFAEFRDRRKIFDIEAYSRQ 469
Query: 391 QIPIEVINGFEPKKR 405
I E I G EP++R
Sbjct: 470 PIKPETIPGLEPQQR 484
>gi|312797197|ref|YP_004030119.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
gi|312168972|emb|CBW75975.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
Length = 555
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 179/405 (44%), Positives = 248/405 (61%), Gaps = 31/405 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ ++GYT PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 7 MSFNSLGLSEPLVRAVNELGYTTPTPIQRQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 66
Query: 61 HKFASSK---NKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAAT 117
+ + S+ KIPV R L+LTPTRELA QV +
Sbjct: 67 ERLSHSRATSGKIPV--------------------------RALILTPTRELAAQVEQSV 100
Query: 118 ERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
YG Y+K +++ + GG+ Q+ L R +I++ATPGRL+DH+ I+ S LQILV
Sbjct: 101 REYGKYLK-LRSTVMFGGVGINPQIDALRRGVDIVVATPGRLLDHLQQRTIDLSSLQILV 159
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
LDEADRMLDMGFI+DI++++ P RQ +LFSAT + +A+N+ P +++V
Sbjct: 160 LDEADRMLDMGFIHDIKRVLKYLPSQRQNLLFSATFSDEIKALADNLLDSPALIEVARRN 219
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+ +TQ+I VD K LL +L++ Q +VFT TK A+ +A++L G A
Sbjct: 220 TTAETVTQTIYPVDRD-RKRELLTHLIKAHNWFQVLVFTRTKHGANRLAEQLTKDGISAL 278
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
+HG+ Q AR R L + G +++LVATD+AARGID+ + HV N+DLP PEDYVHRI
Sbjct: 279 AIHGNKSQAARTRALSEFKDGTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRI 338
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRTGRAG G A+SLV E + IER K+ +P EVI GFEP
Sbjct: 339 GRTGRAGATGEAISLVCIDEHQLLTDIERLIKRTLPREVIAGFEP 383
>gi|398803670|ref|ZP_10562688.1| DNA/RNA helicase, superfamily II [Polaromonas sp. CF318]
gi|398095923|gb|EJL86254.1| DNA/RNA helicase, superfamily II [Polaromonas sp. CF318]
Length = 630
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 184/437 (42%), Positives = 259/437 (59%), Gaps = 29/437 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISG----------RDLIVSSQTGSGK 51
F ++GL + +L+A+ +G+TKPT VQ IP A+ DL+VSSQTGSGK
Sbjct: 50 GFVALGLAKELLQAVADMGFTKPTAVQMATIPKAMQALDADPKAAKFTDLLVSSQTGSGK 109
Query: 52 TAAFMLPALHKFAS----------------SKNKIPVMKKNLNQNNNKIYTHKERLRFKP 95
TAAF+LP LH S + + L + K T FK
Sbjct: 110 TAAFLLPVLHTLLKQQEEAERFERAEFERLSAEAVARGEAPLKKPKRKDPTSPR--NFKA 167
Query: 96 AQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLAT 155
A P L+L PTRELA QV A + + ++ +++GG+PY Q+ L +N +++AT
Sbjct: 168 ATPGALILCPTRELAQQVCADAIDLVRHCRGLRIANVVGGIPYQLQIAKL-QNANLVVAT 226
Query: 156 PGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDG 215
PGRL+D S +I +Q LV+DEADRMLD+GF +D+ ++ T +QTM+FSAT
Sbjct: 227 PGRLLDLQRSMQIKLDQVQFLVVDEADRMLDLGFADDLTEVNQLTIERKQTMMFSATFAP 286
Query: 216 IVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVF 275
+ +A + + P ++++S +K +ITQS+L+ D++ HK +LLD+LLRD + QA+VF
Sbjct: 287 RIMQLATRVMRTPQRVEIDSPHEKHTSITQSLLWADNMTHKRKLLDHLLRDTTINQAIVF 346
Query: 276 TATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDV 335
+T+ + D +A+ L GF A LHG L Q RNR L R GR+++LVATDVAARG+DV
Sbjct: 347 ASTQVECDGLANDLVQEGFSAVALHGALSQGLRNRRLMAFRDGRVQVLVATDVAARGLDV 406
Query: 336 PAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIE 395
P ITHV NY LP EDYVHRIGRTGRAGR G AV++ +R I+ IE + +Q +
Sbjct: 407 PTITHVINYGLPMKAEDYVHRIGRTGRAGREGKAVTIAEFRDRRKIQDIEHYMQQNLKPS 466
Query: 396 VINGFEPKKRIRTYYSR 412
VI G EP++R R
Sbjct: 467 VIAGLEPQQRFAPTSER 483
>gi|241662052|ref|YP_002980412.1| DEAD/DEAH box helicase [Ralstonia pickettii 12D]
gi|240864079|gb|ACS61740.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D]
Length = 565
Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 178/406 (43%), Positives = 254/406 (62%), Gaps = 19/406 (4%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL + +++A+ ++GY +PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ ++S+ NK+ T + +RF R LVLTPTRELA QV + Y
Sbjct: 61 HRLSASQP-------------NKVQT-PQGMRFPI---RALVLTPTRELAAQVEESVRAY 103
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ +K++ + GG+ Q+ L R +I++ATPGRL+DH+ I+ SH+++LVLDE
Sbjct: 104 GKYLP-LKSMVMFGGVGINPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDE 162
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI KI++ P RQ +LFSAT + +A+ + P +++V
Sbjct: 163 ADRMLDMGFIHDIRKILNILPPKRQNLLFSATFSDDIRELADRLLDKPALIEVARRNTTA 222
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I VD K LL L+RD Q +VFT TK A+ +A++L G A +H
Sbjct: 223 ETVEQRIYPVDR-ERKRELLAKLVRDNDWHQVLVFTRTKHGANRLAEQLTRDGIPALAIH 281
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + G +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 282 GNKSQSARTRALTEFKAGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 341
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
GRAG G A+SLV E ++ IER K+++P V+ GFEP I
Sbjct: 342 GRAGAQGEAISLVCVDEHGLLRDIERLIKRELPRTVLEGFEPDPSI 387
>gi|326318063|ref|YP_004235735.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae
subsp. avenae ATCC 19860]
gi|323374899|gb|ADX47168.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 615
Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 184/429 (42%), Positives = 264/429 (61%), Gaps = 26/429 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAI-----SGR--DLIVSSQTGSGKTAA 54
F +GL +++A+ +GYT+PTGVQE+AIP A+ +G+ DL+VSSQTGSGKTAA
Sbjct: 53 GFVELGLAPELVQAVADLGYTQPTGVQERAIPLAMGAGADAGKFIDLMVSSQTGSGKTAA 112
Query: 55 FMLPALHKF-----ASSKNKIPVMKKNLNQNNNKIYTHKERLR---------FKPAQPRM 100
F+LP LH A+ + + + T +R + FK A P
Sbjct: 113 FLLPVLHTLIGQQAAAQATARAEYEAAAAEALARGETAPKRAKRKDPTNPRHFKAATPGA 172
Query: 101 LVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160
L+L PTRELA QV + + ++ +++GG+PY Q+ L +N ++++ATPGRL+
Sbjct: 173 LILCPTRELAQQVAHDAIELVRHCRGLRVANVVGGIPYQLQIAKL-QNADLVVATPGRLL 231
Query: 161 DHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNM 220
D S +I +Q LV+DEADRMLD+GF +D+ +I + T +QTM+FSAT + +
Sbjct: 232 DLQRSMQIKLDQVQFLVVDEADRMLDLGFSDDLAEINELTSQRKQTMMFSATFAPRIQQL 291
Query: 221 AENITKDPLI----LKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFT 276
A + D ++++S ++K NI Q++ + D+ HK +LLD+ LRD + QA+VF
Sbjct: 292 AMRVMHDGGASVKKVQIDSPQEKHANIKQTLFWADNAQHKRKLLDHWLRDTTINQAIVFA 351
Query: 277 ATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVP 336
+T+ + D +A+ L GF A LHG L Q RNR L LR G+++ILVATDVAARGIDVP
Sbjct: 352 STQVECDGLANDLQQEGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGIDVP 411
Query: 337 AITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEV 396
ITHVFN+ LP EDY HRIGRTGRAGR+G AV+ +R I IE +++QQ +V
Sbjct: 412 TITHVFNFGLPMKAEDYTHRIGRTGRAGRDGLAVTFAEFRDRRKIFDIEGYSRQQFKTDV 471
Query: 397 INGFEPKKR 405
I G EP++R
Sbjct: 472 IAGLEPQQR 480
>gi|398833553|ref|ZP_10591682.1| DNA/RNA helicase, superfamily II, partial [Herbaspirillum sp.
YR522]
gi|398221415|gb|EJN07832.1| DNA/RNA helicase, superfamily II, partial [Herbaspirillum sp.
YR522]
Length = 467
Score = 328 bits (842), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 180/403 (44%), Positives = 249/403 (61%), Gaps = 25/403 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F ++GL + +++A+ + GYT PT +Q QA+PA +SG DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFSALGLSDEIVRAVSEQGYTSPTPIQAQAVPAVLSGGDLMAGAQTGTGKTAGFTLPLL 60
Query: 61 HKF-ASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
+ A +NKI N +I R L+L PTRELA QV +
Sbjct: 61 QRLSAVPRNKI----------NGQIPI------------RALILAPTRELAAQVEESVRL 98
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
YG Y++ + + I GG+ Q+ LL R +IL+ATPGRL+DHM G +N H+QILVLD
Sbjct: 99 YGKYLQ-LSSACIFGGVGINPQIALLKRGVDILVATPGRLLDHMQQGTVNLQHVQILVLD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI DI K++ P RQ +LFSAT + +A+++ +P +++V
Sbjct: 158 EADRMLDMGFIRDIRKVLAVLPPKRQNLLFSATFADEIKKLADSLLTNPALIEVARRNST 217
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+ I Q I VD K+ +L +L++ Q +VFT TK A+ + ++L A +
Sbjct: 218 VEVIGQKIHPVDRD-KKHPMLAHLIQTHGWKQVLVFTRTKHGANKLVEQLARDNITAMAI 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HG+ Q+AR + L + G++ L+ATD+AARGID+ + HV NYDLP PEDYVHRIGR
Sbjct: 277 HGNKSQSARTKALAEFKDGKLTALIATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
TGRAG G AVSLV ER + IERF K++IP+EVI GFEP
Sbjct: 337 TGRAGATGEAVSLVCVDERDLLHDIERFIKREIPVEVIAGFEP 379
>gi|427722229|ref|YP_007069506.1| DEAD/DEAH box helicase [Leptolyngbya sp. PCC 7376]
gi|427353949|gb|AFY36672.1| DEAD/DEAH box helicase domain protein [Leptolyngbya sp. PCC 7376]
Length = 430
Score = 328 bits (841), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 172/402 (42%), Positives = 249/402 (61%), Gaps = 25/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+++GL +L+A+V Y++ T +QEQAIP + GRD++ S+QTG+GKTA F LP L
Sbjct: 1 MKFQTLGLSSEILRAVVDENYSEATPIQEQAIPPILQGRDILASAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + ++P K + PR L+LTPTRELA+QV+ + Y
Sbjct: 61 ERLS----EVPFKKGS-------------------RAPRALILTPTRELAIQVSESVNTY 97
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ +K + I GG+ RQ+Q L R +I++ATPGRL+DH+ I+ SH++I VLDE
Sbjct: 98 GKYLP-LKPVVIYGGVNIKRQIQGLQRGCDIVVATPGRLLDHVFQKTIDLSHIEIFVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
DRMLDMGFI DI KI+ P RQT++FSAT + +A+ + DP ++V
Sbjct: 157 CDRMLDMGFIRDIRKIMAKIPGDRQTLMFSATFSQAIQKLAKTLLDDPAQVEVAPRNTAA 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q + VD K LL YL+ K Q +VFT TK A+ +A +L G A +H
Sbjct: 217 EQVEQMVHLVDQ-KRKRELLSYLIGFKNWRQVLVFTRTKHGANRLAKQLAQDGLTTAAIH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR+R L+ + G++++LVATDVA+RG+D+ + HV N++LP PEDYVHRIGRT
Sbjct: 276 GNKSQGARSRALKEFKEGKVRVLVATDVASRGLDIDQLPHVVNFELPNVPEDYVHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G A+SLV H E+ +K IE+ +++ EV+ G+EP
Sbjct: 336 GRAGNEGQALSLVAHHEKPLLKDIEKLLNRKLDKEVLPGYEP 377
>gi|319761928|ref|YP_004125865.1| dead/deah box helicase domain-containing protein [Alicycliphilus
denitrificans BC]
gi|317116489|gb|ADU98977.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
BC]
Length = 584
Score = 328 bits (841), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 186/432 (43%), Positives = 259/432 (59%), Gaps = 30/432 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIP-----AAISGR--DLIVSSQTGSGKTAA 54
F +GL +++A+ +GYT+PT VQE+AIP A ++GR DL+VSSQTGSGKTAA
Sbjct: 32 GFVRLGLAPELVQAVADLGYTQPTAVQEKAIPLAMGAADVAGRFIDLMVSSQTGSGKTAA 91
Query: 55 FMLPALHKF----------------ASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP 98
F+LP LH ++ + + K TH FK A P
Sbjct: 92 FLLPVLHTLIQQQADADAAARAEFERAAAEAAARGEAAPKRPKRKNPTHPR--NFKAAAP 149
Query: 99 RMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGR 158
LVL PTRELA QV + K ++ +++GGMPY Q+ L +N +++ATPGR
Sbjct: 150 GALVLCPTRELAQQVAHDAIELVKHCKGLRIANVVGGMPYQLQIARL-QNANLVVATPGR 208
Query: 159 LIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVG 218
L+D S +I +Q LV+DEADRMLD+GF +D+ +I T +QTM+FSAT +
Sbjct: 209 LLDLQRSMQIKLDQVQFLVVDEADRMLDLGFSDDLAEINQLTSERKQTMMFSATFAPRIQ 268
Query: 219 NMAENITKDPLI----LKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVV 274
+A + + +++++ ++K NI Q + + D+ HK +LLD+ LRD +GQA+V
Sbjct: 269 QLAMRVMHEGGASVKKVQIDTPQEKHANIKQMLYWADNAQHKRKLLDHWLRDASIGQAIV 328
Query: 275 FTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGID 334
F +T+ + D +A+ L GF A LHG L Q RNR L LR G+++ILVATDVAARGID
Sbjct: 329 FASTQVECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGID 388
Query: 335 VPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
VP+ITHVFN+ LP EDY HRIGRTGRAGR+G AV+ +R I IE +++QQ
Sbjct: 389 VPSITHVFNFGLPMKAEDYTHRIGRTGRAGRDGLAVTFAEFRDRRKIFDIEGYSRQQFKA 448
Query: 395 EVINGFEPKKRI 406
EV+ G EP +R
Sbjct: 449 EVVAGLEPTQRF 460
>gi|443316249|ref|ZP_21045701.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 6406]
gi|442784157|gb|ELR94045.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 6406]
Length = 438
Score = 327 bits (839), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 170/402 (42%), Positives = 250/402 (62%), Gaps = 25/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+++GL +L+A+ GY+ PT +Q +AIP + G+DL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFETLGLAAGILRAVEDQGYSTPTPIQAKAIPLVLEGKDLMASAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
HK AS+ Q PR LVLTPTRELA QV + Y
Sbjct: 61 HKLASAGR---------GQGRRP--------------PRALVLTPTRELAAQVAESIATY 97
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ ++ + GG+ Q+ L R ++L+ATPGRL+DH+ ++ S +++LVLDE
Sbjct: 98 GKYVP-LRTAVVFGGVKIQPQIHKLQRGVDVLVATPGRLLDHVGQRTVDLSQVEVLVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI ++++ P RQT++FSAT + +A++I +DP++++V +
Sbjct: 157 ADRMLDMGFIHDIRRLLNELPAERQTLMFSATFSNEIKKLADDILRDPVLVEVAARNSTA 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
I+Q + VD K LL Y++ Q +VFT TK A+ +A++L G A +H
Sbjct: 217 DKISQVVHPVDR-QRKRELLSYMIGQHNWQQVLVFTRTKHGANRLAEQLERDGLKTAAIH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L++ ++G +++LVATD+AARG+D+ + HV N++LP EDYVHRIGRT
Sbjct: 276 GNKSQGARTRALQDFKKGAVRVLVATDIAARGLDIDHLPHVVNFELPNVSEDYVHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G AVSLV+ E ++ IER KQ +P +VI G+EP
Sbjct: 336 GRAGNTGQAVSLVSSEEYPLLRSIERLLKQDLPKDVIPGYEP 377
>gi|418530709|ref|ZP_13096632.1| hypothetical protein CTATCC11996_13485 [Comamonas testosteroni ATCC
11996]
gi|371452428|gb|EHN65457.1| hypothetical protein CTATCC11996_13485 [Comamonas testosteroni ATCC
11996]
Length = 708
Score = 327 bits (839), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 186/430 (43%), Positives = 258/430 (60%), Gaps = 26/430 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAI------SGR-DLIVSSQTGSGKTAA 54
F +GL +++A+ +GYT+PT VQ++AIP A+ SG DL+VSSQTGSGKTAA
Sbjct: 57 GFVELGLAPELVQAVADLGYTQPTQVQQKAIPLAMGEAADASGFIDLMVSSQTGSGKTAA 116
Query: 55 FMLPALHKF--------ASSKNKIPVMKKNLNQNNNKIYTHKER------LRFKPAQPRM 100
F+LP LH A +K + + + +R FK A P
Sbjct: 117 FLLPVLHTLIQQRAQADAEAKAEFERLCAEATAKGEPLPKRNKRKDPTNSRNFKAAVPGA 176
Query: 101 LVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160
LVL PTRELA QV + + I+ +++GG+PY Q+ L +N ++++ATPGRL+
Sbjct: 177 LVLCPTRELAQQVAHDAIELVKHCRGIRIANVVGGIPYQLQIAKL-QNADLVVATPGRLL 235
Query: 161 DHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNM 220
D S +I +Q LV+DEADRMLD+GF +D+ ++ T +QTM+FSAT V +
Sbjct: 236 DLQRSMQIKLDKVQFLVVDEADRMLDLGFSDDLAEVNQMTAQRKQTMMFSATFAPRVQQL 295
Query: 221 AENITKDPLI----LKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFT 276
A + D + V++ ++K NI Q++ + D++ HK +LLD+ LRD + QA+VF
Sbjct: 296 AMRVMHDNGSGVKKVTVDTPQEKHANIKQALFWADNMQHKRKLLDHWLRDSSINQAIVFA 355
Query: 277 ATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVP 336
+T+ + D +A+ L GF A LHG L Q RNR L LR G+++ILVATDVAARGIDVP
Sbjct: 356 STQVECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGIDVP 415
Query: 337 AITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEV 396
ITHVFNY LP EDY HRIGRTGRAGR G AV+ +R + IE +T+QQ E
Sbjct: 416 TITHVFNYGLPMKAEDYTHRIGRTGRAGREGVAVTFAEFRDRRRVFDIEGYTRQQFKAET 475
Query: 397 INGFEPKKRI 406
I G EP++R
Sbjct: 476 IPGMEPQQRF 485
>gi|347819998|ref|ZP_08873432.1| DEAD/DEAH box helicase domain-containing protein [Verminephrobacter
aporrectodeae subsp. tuberculatae At4]
Length = 563
Score = 327 bits (839), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 186/432 (43%), Positives = 259/432 (59%), Gaps = 27/432 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAI-----SGR--DLIVSSQTGSGKTAA 54
F +GL +++A+ +GYT+PT VQ +AIP A+ SG+ DL+VSSQTGSGKTAA
Sbjct: 41 GFVELGLAPELVQAVADLGYTRPTAVQCKAIPLAMGAGADSGQFIDLMVSSQTGSGKTAA 100
Query: 55 FMLPALHKF-------ASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTR 107
F+LP LH ++ P K+ ++ K A P L+L PTR
Sbjct: 101 FLLPVLHTLIQQQAQAETAACDTPAPKRAKRRDPGSARN------LKAATPGALILCPTR 154
Query: 108 ELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLS-RNPEILLATPGRLIDHMNSG 166
ELA QV + + ++ +++GGMPY QMQ+ +N +++ATPGRL+D S
Sbjct: 155 ELAQQVAHDAIDLVKHCRGLRVANVVGGMPY--QMQIARLQNANLVVATPGRLLDLQRSM 212
Query: 167 KINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITK 226
+I +Q LV+DEADRMLD+GF +D+ ++ T +QTM+FSAT + +A +
Sbjct: 213 RIKLDQVQFLVVDEADRMLDLGFSDDLAELNQLTSERKQTMMFSATFAPRIQQLALRVMH 272
Query: 227 DP----LILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDA 282
D L ++S ++K NI Q + + D+ HK +LLD+ LRD + QA+VF +T+ +
Sbjct: 273 DGGSSVQKLTIDSPQEKHANIQQMLYWADNAQHKRKLLDHWLRDTTINQAIVFASTQVEC 332
Query: 283 DIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVF 342
D +A+ L +GF A LHG L Q+ RNR L LR G+++ILVATDVAARGIDVP ITHVF
Sbjct: 333 DALANDLQQAGFSAVALHGALGQSLRNRRLTALRAGQVQILVATDVAARGIDVPTITHVF 392
Query: 343 NYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
N+ LP EDY HRIGRTGRAGR+G AV+ +R I IE +++QQ EVI G EP
Sbjct: 393 NFGLPMKAEDYTHRIGRTGRAGRDGLAVTFAEFRDRRKIYDIESYSRQQFKAEVIPGMEP 452
Query: 403 KKRIRTYYSRYR 414
+R R R
Sbjct: 453 AQRSPQAAPRGR 464
>gi|386334504|ref|YP_006030675.1| ATP-dependent rna helicase protein [Ralstonia solanacearum Po82]
gi|334196954|gb|AEG70139.1| ATP-dependent rna helicase protein [Ralstonia solanacearum Po82]
Length = 674
Score = 327 bits (838), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 177/407 (43%), Positives = 253/407 (62%), Gaps = 21/407 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL + +++A+ ++GY +PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 128 MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 187
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYT-HKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
H+ ++++ NK++T H R R LVLTPTRELA QV +
Sbjct: 188 HRLSAAQP-------------NKVHTPHGMRYPI-----RALVLTPTRELAAQVEESVRA 229
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
YG Y+ +K++ + GG+ Q+ L R +I++ATPGRL+DH+ I+ SH+++LVLD
Sbjct: 230 YGKYLP-LKSMVMFGGVGINPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLD 288
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DI KI++ P RQ +LFSAT + +A+ + P +++V
Sbjct: 289 EADRMLDMGFIHDIRKILNILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTT 348
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+ + Q I VD K LL L+RD Q +VFT TK A+ +A++L G A +
Sbjct: 349 AETVEQRIYPVDR-ERKRELLAKLVRDNDWHQVLVFTRTKHGANRLAEQLTRDGISALAI 407
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HG+ Q+AR R L + G +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGR
Sbjct: 408 HGNKSQSARTRALSEFKAGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGR 467
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
TGRAG G A+SLV E ++ IER K+++P V+ GFEP I
Sbjct: 468 TGRAGAQGEAISLVCVDEHGLLRDIERLIKRELPRTVLEGFEPDPTI 514
>gi|421900031|ref|ZP_16330394.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
gi|206591237|emb|CAQ56849.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
Length = 559
Score = 327 bits (838), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 177/407 (43%), Positives = 253/407 (62%), Gaps = 21/407 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL + +++A+ ++GY +PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 17 MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 76
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYT-HKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
H+ ++++ NK++T H R R LVLTPTRELA QV +
Sbjct: 77 HRLSAAQP-------------NKVHTPHGMRYPI-----RALVLTPTRELAAQVEESVRA 118
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
YG Y+ +K++ + GG+ Q+ L R +I++ATPGRL+DH+ I+ SH+++LVLD
Sbjct: 119 YGKYLP-LKSMVMFGGVGINPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLD 177
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DI KI++ P RQ +LFSAT + +A+ + P +++V
Sbjct: 178 EADRMLDMGFIHDIRKILNILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTT 237
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+ + Q I VD K LL L+RD Q +VFT TK A+ +A++L G A +
Sbjct: 238 AETVEQRIYPVDR-ERKRELLAKLVRDNDWHQVLVFTRTKHGANRLAEQLTRDGISALAI 296
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HG+ Q+AR R L + G +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGR
Sbjct: 297 HGNKSQSARTRALSEFKAGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGR 356
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
TGRAG G A+SLV E ++ IER K+++P V+ GFEP I
Sbjct: 357 TGRAGAQGEAISLVCVDEHGLLRDIERLIKRELPRTVLEGFEPDPTI 403
>gi|333898539|ref|YP_004472412.1| DEAD/DEAH box helicase [Pseudomonas fulva 12-X]
gi|333113804|gb|AEF20318.1| DEAD/DEAH box helicase domain protein [Pseudomonas fulva 12-X]
Length = 615
Score = 327 bits (837), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 179/407 (43%), Positives = 254/407 (62%), Gaps = 26/407 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPAA+ GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAVEAAGYTQPTPVQQRAIPAALQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKER-LRFKPAQPRMLVLTPTRELALQVTAATER 119
+ + H +R R P QPR+LVLTPTRELA QV +
Sbjct: 61 ERLFPN-------------------GHPDREQRHGPKQPRVLVLTPTRELAAQVH---DS 98
Query: 120 YGLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
+ LY + +K +S I GG+ Q+Q L++ ++L+A PGRL+D G ++ SH++ILV
Sbjct: 99 FKLYARDLKFVSACIFGGVGMNPQVQALAKGVDVLVACPGRLLDLAGQGSVDLSHVEILV 158
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
LDEADRMLDMGFI+D++K++ P RQ +LFSAT + ++A + DP ++V
Sbjct: 159 LDEADRMLDMGFIHDVKKVLARLPAKRQNLLFSATFSKDITDLASKLLHDPERIEVTPPN 218
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L G AA
Sbjct: 219 TTVERIEQRV-FRLQASHKRALLAHLITAGAWEQVLVFTRTKHGANRLAEYLEKHGLTAA 277
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
+HG+ QNAR + L + + +++ILVATD+AARG+D+ + HV N++LP EDYVHRI
Sbjct: 278 AIHGNKSQNARTKALADFKANKVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRI 337
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRTGRAGR+G A+SLV E +K IER TKQ+IP + GF+ K
Sbjct: 338 GRTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIPDGDLMGFDASK 384
>gi|120610574|ref|YP_970252.1| DEAD/DEAH box helicase [Acidovorax citrulli AAC00-1]
gi|120589038|gb|ABM32478.1| DEAD/DEAH box helicase domain protein [Acidovorax citrulli AAC00-1]
Length = 619
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 186/437 (42%), Positives = 259/437 (59%), Gaps = 42/437 (9%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAI-----SGR--DLIVSSQTGSGKTAA 54
F +GL +++A+ +GYT+PTGVQE+AIP A+ +G+ DL+VSSQTGSGKTAA
Sbjct: 50 GFVELGLAPELVQAVADLGYTQPTGVQERAIPLAMGAGADAGKFIDLMVSSQTGSGKTAA 109
Query: 55 FMLPALHKFASSK----------------------NKIPVMKKNLNQNNNKIYTHKERLR 92
F+LP LH + P K + N +
Sbjct: 110 FLLPVLHTLIGQQAAAQAAARAEYEAAVAEAAARGEPAPKRAKRKDPTNPR--------H 161
Query: 93 FKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEIL 152
FK A P LVL PTRELA QV + + ++ +++GG+PY Q+ L +N +++
Sbjct: 162 FKAATPGALVLCPTRELAQQVAHDAIELVRHCRGLRVANVVGGIPYQLQIAKL-QNADLV 220
Query: 153 LATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSAT 212
+ATPGRL+D S +I +Q LV+DEADRMLD+GF +D+ +I + T +QTM+FSAT
Sbjct: 221 VATPGRLLDLQRSMQIKLDQVQFLVVDEADRMLDLGFSDDLAEINELTSQRKQTMMFSAT 280
Query: 213 LDGIVGNMAENITKDPLI----LKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKR 268
+ +A + D ++++S ++K NI Q + + D+ HK ++LD+ LRD
Sbjct: 281 FAPRIQQLAMRVMHDGGASVKKVQIDSPQEKHANIKQVLFWADNAQHKRKMLDHWLRDTS 340
Query: 269 VGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDV 328
+ QAVVF +T+ + D +A+ L GF A LHG L Q RNR L LR G+++ILVATDV
Sbjct: 341 INQAVVFASTQVECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDV 400
Query: 329 AARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFT 388
AARGIDVP ITHVFN+ LP EDY HRIGRTGRAGR+G AV+ +R I IE ++
Sbjct: 401 AARGIDVPTITHVFNFGLPMKAEDYTHRIGRTGRAGRDGLAVTFAEFRDRRKIFDIEVYS 460
Query: 389 KQQIPIEVINGFEPKKR 405
KQ EVI G EP++R
Sbjct: 461 KQPFKAEVIPGLEPQQR 477
>gi|402565565|ref|YP_006614910.1| DEAD/DEAH box helicase [Burkholderia cepacia GG4]
gi|402246762|gb|AFQ47216.1| DEAD/DEAH box helicase domain protein [Burkholderia cepacia GG4]
Length = 489
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 177/402 (44%), Positives = 249/402 (61%), Gaps = 23/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+S+GL E ++KA+ ++GYT PT +Q+QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ ++T R R L+LTPTRELA QV + Y
Sbjct: 61 QR---------------------LHTFYAEHRGAKRAIRALILTPTRELAAQVEESVRAY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+K +++ + GG+ Q+ L R +I++ATPGRL+DHM I+ S+L ILVLDE
Sbjct: 100 SKYLK-LRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + +A+N+ P +++V
Sbjct: 159 ADRMLDMGFIHDIKRVLAKLPPERQNLLFSATFSDEIKALADNLLDSPALIEVARRNTTA 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+++ Q I VD K LL +L+R+ Q +VFT TK A+ +A++L G A +H
Sbjct: 219 ESVAQKIHPVDRD-RKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 278 GNKSQSARTRALAEFKNSTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G AVSLV E+ ++ IER K++IP EVI GFEP
Sbjct: 338 GRAGATGEAVSLVCVDEKQLLRDIERLIKREIPQEVIAGFEP 379
>gi|395761621|ref|ZP_10442290.1| ATP-dependent RNA helicase [Janthinobacterium lividum PAMC 25724]
Length = 456
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 177/424 (41%), Positives = 249/424 (58%), Gaps = 19/424 (4%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL + +++A+ + GYT PT +Q QAIPA ++G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFSSLGLSDAIVRAVTEHGYTVPTPIQSQAIPAVLAGGDLLAGAQTGTGKTAGFTLPVL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ ++ N + +P R L+L PTRELA QV + Y
Sbjct: 61 HRLSTDANGASITSTT---------------STRPI--RALILAPTRELAAQVEESVRAY 103
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y K + + I GG+ Q++ L +IL+ATPGRL+DHM G ++ S ++IL+LDE
Sbjct: 104 SKYTK-LNSTVIFGGVGINPQIKQLKHGVDILVATPGRLLDHMGQGTVDLSKVEILILDE 162
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI+K++ P RQ +LFSAT + +A+ + P +++V
Sbjct: 163 ADRMLDMGFIRDIKKVLAVLPPKRQNLLFSATFSEEIKALADGLLNKPAMIEVARRNSTV 222
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q I VD K+ +L YL++ Q +VFT TK A+ + ++L G A +H
Sbjct: 223 EVIKQKIHPVDRD-KKHPMLSYLIKSNNWTQVLVFTRTKHGANKLVEQLGADGIGALAIH 281
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + G +++LVATD+AARGID+ + HV NYDLP PEDYVHRIGRT
Sbjct: 282 GNKSQSARTRALSEFKDGTLQVLVATDIAARGIDIDQLPHVVNYDLPNIPEDYVHRIGRT 341
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRYRFNNNNW 420
GRAG G AVSLV E +K IE+ KQ +P EVI GFEP R + R
Sbjct: 342 GRAGAKGEAVSLVCVDEHEMLKDIEKLIKQTLPREVIEGFEPDLNARAQPVQLRSGTGGH 401
Query: 421 KTHN 424
+ ++
Sbjct: 402 RNNS 405
>gi|115352774|ref|YP_774613.1| DEAD/DEAH box helicase [Burkholderia ambifaria AMMD]
gi|115282762|gb|ABI88279.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
Length = 480
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 251/402 (62%), Gaps = 23/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+S+GL E ++KA+ ++GYT PT +Q+QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ ++T+ R R L+LTPTRELA QV + Y
Sbjct: 61 QR---------------------LHTYYAEHRGAKRAVRALILTPTRELAAQVEESVRAY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+K +++ + GG+ Q+ L R +I++ATPGRL+DHM I+ S+L ILVLDE
Sbjct: 100 SKYVK-LRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + ++A+++ P +++V
Sbjct: 159 ADRMLDMGFIHDIKRVLAKLPPQRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTA 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+++ Q I VD K LL +L+R+ Q +VFT TK A+ +A++L G A +H
Sbjct: 219 ESVAQKIHPVDRD-RKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 278 GNKSQSARTRALAEFKSSTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G AVSLV E+ ++ IER K++IP EVI GFEP
Sbjct: 338 GRAGATGEAVSLVCVDEKQLLRDIERLIKREIPQEVIAGFEP 379
>gi|171317466|ref|ZP_02906657.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
gi|171097362|gb|EDT42206.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
Length = 480
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 251/402 (62%), Gaps = 23/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+S+GL E ++KA+ ++GYT PT +Q+QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ ++T+ R R L+LTPTRELA QV + Y
Sbjct: 61 QR---------------------LHTYYAEHRGAKRAVRALILTPTRELAAQVEESVRAY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+K +++ + GG+ Q+ L R +I++ATPGRL+DHM I+ S+L ILVLDE
Sbjct: 100 SKYVK-LRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + ++A+++ P +++V
Sbjct: 159 ADRMLDMGFIHDIKRVLAKLPPQRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTA 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+++ Q I VD K LL +L+R+ Q +VFT TK A+ +A++L G A +H
Sbjct: 219 ESVAQKIHPVDRD-RKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 278 GNKSQSARTRALAEFKSSTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G AVSLV E+ ++ IER K++IP EVI GFEP
Sbjct: 338 GRAGATGEAVSLVCVDEKQLLRDIERLIKREIPQEVIAGFEP 379
>gi|207742395|ref|YP_002258787.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
gi|206593785|emb|CAQ60712.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
Length = 545
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 177/407 (43%), Positives = 253/407 (62%), Gaps = 21/407 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL + +++A+ ++GY +PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYT-HKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
H+ ++++ NK++T H R R LVLTPTRELA QV +
Sbjct: 61 HRLSAAQP-------------NKVHTPHGMRYPI-----RALVLTPTRELAAQVEESVRA 102
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
YG Y+ +K++ + GG+ Q+ L R +I++ATPGRL+DH+ I+ SH+++LVLD
Sbjct: 103 YGKYLP-LKSMVMFGGVGINPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLD 161
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DI KI++ P RQ +LFSAT + +A+ + P +++V
Sbjct: 162 EADRMLDMGFIHDIRKILNILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTT 221
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+ + Q I VD K LL L+RD Q +VFT TK A+ +A++L G A +
Sbjct: 222 AETVEQRIYPVDR-ERKRELLAKLVRDNDWHQVLVFTRTKHGANRLAEQLTRDGISALAI 280
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HG+ Q+AR R L + G +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGR
Sbjct: 281 HGNKSQSARTRALSEFKAGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGR 340
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
TGRAG G A+SLV E ++ IER K+++P V+ GFEP I
Sbjct: 341 TGRAGAQGEAISLVCVDEHGLLRDIERLIKRELPRTVLEGFEPDPTI 387
>gi|170693410|ref|ZP_02884569.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
gi|170141565|gb|EDT09734.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
Length = 510
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 178/402 (44%), Positives = 248/402 (61%), Gaps = 22/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ ++GYT PT +Q QAIPA ++G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ S M N + + + R L+LTPTRELA QV + Y
Sbjct: 61 QRLNS-------MPANTSASGKRAV-------------RALILTPTRELAAQVEESVRAY 100
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+K +K+ + GG+ Q+ L +I++ATPGRL+DHM I+ SHL+ILVLDE
Sbjct: 101 GKYLK-LKSTVMFGGVGINPQIGALRSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDE 159
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + +A+N+ P +++V
Sbjct: 160 ADRMLDMGFIHDIKRVLAKLPPKRQNLLFSATFSDEIKTLADNLLDSPALIEVARRNTTA 219
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I VD K LL +L++ Q +VFT TK A+ +A++L G A +H
Sbjct: 220 ETVAQKIHPVDRD-KKRELLTHLIKQHNWFQVLVFTRTKHGANRLAEQLTKDGISALAIH 278
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + G +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 279 GNKSQSARTRALAEFKDGTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 338
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G AVSLV E +K IE+ K+ +P EVI GFEP
Sbjct: 339 GRAGATGEAVSLVCVDELQLLKDIEKLIKRPVPQEVIAGFEP 380
>gi|83746106|ref|ZP_00943161.1| ATP-dependent RNA helicase RhlE [Ralstonia solanacearum UW551]
gi|83727289|gb|EAP74412.1| ATP-dependent RNA helicase RhlE [Ralstonia solanacearum UW551]
Length = 603
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 177/407 (43%), Positives = 253/407 (62%), Gaps = 21/407 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL + +++A+ ++GY +PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 59 MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 118
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYT-HKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
H+ ++++ NK++T H R R LVLTPTRELA QV +
Sbjct: 119 HRLSAAQP-------------NKVHTPHGMRYPI-----RALVLTPTRELAAQVEESVRA 160
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
YG Y+ +K++ + GG+ Q+ L R +I++ATPGRL+DH+ I+ SH+++LVLD
Sbjct: 161 YGKYLP-LKSMVMFGGVGINPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLD 219
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DI KI++ P RQ +LFSAT + +A+ + P +++V
Sbjct: 220 EADRMLDMGFIHDIRKILNILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTT 279
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+ + Q I VD K LL L+RD Q +VFT TK A+ +A++L G A +
Sbjct: 280 AETVEQRIYPVDR-ERKRELLAKLVRDNDWHQVLVFTRTKHGANRLAEQLTRDGISALAI 338
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HG+ Q+AR R L + G +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGR
Sbjct: 339 HGNKSQSARTRALSEFKAGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGR 398
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
TGRAG G A+SLV E ++ IER K+++P V+ GFEP I
Sbjct: 399 TGRAGAQGEAISLVCVDEHGLLRDIERLIKRELPRTVLEGFEPDPTI 445
>gi|421889295|ref|ZP_16320341.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum K60-1]
gi|378965361|emb|CCF97089.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum K60-1]
Length = 545
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 176/407 (43%), Positives = 253/407 (62%), Gaps = 21/407 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL + +++A+ ++GY +PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYT-HKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
H+ ++++ NK++T H R R LVLTPTRELA QV +
Sbjct: 61 HRLSAAQP-------------NKVHTPHGMRYPI-----RALVLTPTRELAAQVEESVRA 102
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
YG Y+ +K++ + GG+ Q+ L R +I++ATPGRL+DH+ I+ SH+++LVLD
Sbjct: 103 YGKYLP-LKSMVMFGGVGINPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLD 161
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DI KI++ P RQ +LFSAT + +A+ + P +++V
Sbjct: 162 EADRMLDMGFIHDIRKILNILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTT 221
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+ + Q I VD K LL L+RD Q +VFT TK A+ +A++L G A +
Sbjct: 222 AETVEQRIYPVDR-ERKRELLAKLVRDNDWHQVLVFTRTKHGANRLAEQLTRDGISALAI 280
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HG+ Q+AR R L + G +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGR
Sbjct: 281 HGNKSQSARTRALSEFKAGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGR 340
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
TGRAG G A+SLV E ++ IER K+++P ++ GFEP I
Sbjct: 341 TGRAGAQGEAISLVCVDEHGLLRDIERLIKRELPRTILEGFEPDPTI 387
>gi|300705099|ref|YP_003746702.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum
CFBP2957]
gi|299072763|emb|CBJ44116.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum
CFBP2957]
Length = 547
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 177/407 (43%), Positives = 253/407 (62%), Gaps = 21/407 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL + +++A+ ++GY +PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYT-HKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
H+ ++++ NK++T H R R LVLTPTRELA QV +
Sbjct: 61 HRLSAAQP-------------NKVHTPHGMRYPV-----RALVLTPTRELAAQVEESVRA 102
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
YG Y+ +K++ + GG+ Q+ L R +I++ATPGRL+DH+ I+ SH+++LVLD
Sbjct: 103 YGKYLP-LKSMVMFGGVGINPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLD 161
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DI KI++ P RQ +LFSAT + +A+ + P +++V
Sbjct: 162 EADRMLDMGFIHDIRKILNILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTT 221
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+ + Q I VD K LL L+RD Q +VFT TK A+ +A++L G A +
Sbjct: 222 AETVEQRIYPVDR-ERKRELLAKLVRDNDWHQVLVFTRTKHGANRLAEQLTRDGISALAI 280
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HG+ Q+AR R L + G +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGR
Sbjct: 281 HGNKSQSARTRALSEFKAGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGR 340
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
TGRAG G A+SLV E ++ IER K+++P V+ GFEP I
Sbjct: 341 TGRAGAQGEAISLVCVDEHGLLRDIERLIKRELPRTVLEGFEPDPTI 387
>gi|167769379|ref|ZP_02441432.1| hypothetical protein ANACOL_00705 [Anaerotruncus colihominis DSM
17241]
gi|167668347|gb|EDS12477.1| DEAD/DEAH box helicase [Anaerotruncus colihominis DSM 17241]
Length = 439
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 171/394 (43%), Positives = 244/394 (61%), Gaps = 24/394 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+ +GL + +L+A+ GY +P+ +Q+QAIP A++G D++ +QTG+GKTAAF +P L
Sbjct: 19 MKFEELGLIQPILRAVRDEGYVEPSAIQQQAIPPALAGHDVLGCAQTGTGKTAAFAIPIL 78
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ L+ I T P R LVLTPTRELA+Q+ + + Y
Sbjct: 79 QR--------------LDTQCASIKT--------PCVIRALVLTPTRELAIQIKDSFQSY 116
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G YM+ +++ + GG+P Q+ L R +IL+ATPGRL D + G I+ S + + VLDE
Sbjct: 117 GRYMR-LRSTVVFGGVPQTPQVDELRRGVDILVATPGRLNDLIGQGIIDLSSVSVFVLDE 175
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+D+E++++ P RQT+ FSAT+ + ++ + I DP+ + V +
Sbjct: 176 ADRMLDMGFIHDVERVINHLPNKRQTLFFSATMPKAIMHLCDRILTDPVKVAVTPVSSPV 235
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q + FVD +K RLL YLL D + A+VFT TK AD +A L +G A +H
Sbjct: 236 EAIEQRLYFVDK-PNKRRLLIYLLEDVSIVSALVFTFTKHGADRVARELVKAGIKAQAIH 294
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD Q AR R L + G I++LVATD+AARGID+ ++HVFNYDLP PE YVHRIGRT
Sbjct: 295 GDKSQGARQRALSAFKNGDIRVLVATDIAARGIDIDELSHVFNYDLPNIPETYVHRIGRT 354
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
GRAG G A+S + E N+ IE+ ++IP+
Sbjct: 355 GRAGLGGIAISFCSIVEMENLHAIEKLIGRKIPV 388
>gi|170698992|ref|ZP_02890050.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
gi|170136099|gb|EDT04369.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
Length = 472
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 251/402 (62%), Gaps = 23/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+S+GL E ++KA+ ++GYT PT +Q+QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ ++T+ R R L+LTPTRELA QV + Y
Sbjct: 61 QR---------------------LHTYYAEHRGAKRAVRALILTPTRELAAQVEESVRAY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+K +++ + GG+ Q+ L R +I++ATPGRL+DHM I+ S+L ILVLDE
Sbjct: 100 SKYVK-LRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + ++A+++ P +++V
Sbjct: 159 ADRMLDMGFIHDIKRVLAKLPPQRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTA 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+++ Q I VD K LL +L+R+ Q +VFT TK A+ +A++L G A +H
Sbjct: 219 ESVAQKIHPVDRD-RKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 278 GNKSQSARTRALAEFKSSTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G AVSLV E+ ++ IER K++IP EVI GFEP
Sbjct: 338 GRAGATGEAVSLVCVDEKQLLRDIERLIKREIPQEVIAGFEP 379
>gi|172061636|ref|YP_001809288.1| DEAD/DEAH box helicase [Burkholderia ambifaria MC40-6]
gi|171994153|gb|ACB65072.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MC40-6]
Length = 479
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 251/402 (62%), Gaps = 23/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+S+GL E ++KA+ ++GYT PT +Q+QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ ++T+ R R L+LTPTRELA QV + Y
Sbjct: 61 QR---------------------LHTYYAEHRGAKRAVRALILTPTRELAAQVEESVRAY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+K +++ + GG+ Q+ L R +I++ATPGRL+DHM I+ S+L ILVLDE
Sbjct: 100 SKYVK-LRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + ++A+++ P +++V
Sbjct: 159 ADRMLDMGFIHDIKRVLAKLPPQRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTA 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+++ Q I VD K LL +L+R+ Q +VFT TK A+ +A++L G A +H
Sbjct: 219 ESVAQKIHPVDRD-RKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 278 GNKSQSARTRALAEFKSSTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G AVSLV E+ ++ IER K++IP EVI GFEP
Sbjct: 338 GRAGATGEAVSLVCVDEKQLLRDIERLIKREIPQEVIAGFEP 379
>gi|264677044|ref|YP_003276950.1| hypothetical protein CtCNB1_0908 [Comamonas testosteroni CNB-2]
gi|262207556|gb|ACY31654.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
Length = 690
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 185/437 (42%), Positives = 257/437 (58%), Gaps = 40/437 (9%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGR-------DLIVSSQTGSGKTAA 54
F +GL +++A+ +GYT+PT VQ QAIP A+ DL+VSSQTGSGKTAA
Sbjct: 42 GFVELGLAPELIQAVTDLGYTQPTAVQLQAIPLAMGEGADADGFIDLMVSSQTGSGKTAA 101
Query: 55 FMLPALHKF---------------------ASSKNKIPVMKKNLNQNNNKIYTHKERLRF 93
F+LP LH A++K + P K+N ++ F
Sbjct: 102 FLLPVLHTLIKQRAVADAAAKAEFERLCAEAAAKGE-PAPKRNKRKDPTNARN------F 154
Query: 94 KPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILL 153
K A P LVL PTRELA QV + + I+ +++GG+PY Q+ L +N ++++
Sbjct: 155 KAAVPGALVLCPTRELAQQVAHDAIELVKHCRGIRIANVVGGIPYQLQIAKL-QNADLVV 213
Query: 154 ATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATL 213
ATPGRL+D S +I +Q LV+DEADRMLD+GF +D+ ++ T +QTM+FSAT
Sbjct: 214 ATPGRLLDLQRSMQIKLDKVQFLVVDEADRMLDLGFSDDLAEVNQLTAERKQTMMFSATF 273
Query: 214 DGIVGNMAENITKDPLI----LKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRV 269
+ +A + D + + + ++K NI Q++ + D++ HK +LLD+ LRD +
Sbjct: 274 APRIQQLAMRVMHDGGANVKKITIATPQEKHANIKQALFWADNMQHKRKLLDHWLRDSSI 333
Query: 270 GQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVA 329
QA+VF +T+ + D +A+ L GF A LHG L Q RNR L LR G+++ILVATDVA
Sbjct: 334 NQAIVFASTQVECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVA 393
Query: 330 ARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTK 389
ARGIDVP ITHVFNY LP EDY HRIGRTGRAGR G AV+ +R + IE +T+
Sbjct: 394 ARGIDVPTITHVFNYGLPMKAEDYTHRIGRTGRAGREGVAVTFAEFRDRRRVFDIEGYTR 453
Query: 390 QQIPIEVINGFEPKKRI 406
QQ E I G EP++R
Sbjct: 454 QQFKAETIPGMEPQQRF 470
>gi|299532536|ref|ZP_07045926.1| hypothetical protein CTS44_17127 [Comamonas testosteroni S44]
gi|298719483|gb|EFI60450.1| hypothetical protein CTS44_17127 [Comamonas testosteroni S44]
Length = 700
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 185/437 (42%), Positives = 257/437 (58%), Gaps = 40/437 (9%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGR-------DLIVSSQTGSGKTAA 54
F +GL +++A+ +GYT+PT VQ QAIP A+ DL+VSSQTGSGKTAA
Sbjct: 52 GFVELGLAPELIQAVTDLGYTQPTAVQLQAIPLAMGEGADADGFIDLMVSSQTGSGKTAA 111
Query: 55 FMLPALHKF---------------------ASSKNKIPVMKKNLNQNNNKIYTHKERLRF 93
F+LP LH A++K + P K+N ++ F
Sbjct: 112 FLLPVLHTLIKQRAVADAAAKAEFERLCAEAAAKGE-PAPKRNKRKDPTNARN------F 164
Query: 94 KPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILL 153
K A P LVL PTRELA QV + + I+ +++GG+PY Q+ L +N ++++
Sbjct: 165 KAAVPGALVLCPTRELAQQVAHDAIELVKHCRGIRIANVVGGIPYQLQIAKL-QNADLVV 223
Query: 154 ATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATL 213
ATPGRL+D S +I +Q LV+DEADRMLD+GF +D+ ++ T +QTM+FSAT
Sbjct: 224 ATPGRLLDLQRSMQIKLDKVQFLVVDEADRMLDLGFSDDLAEVNQLTAERKQTMMFSATF 283
Query: 214 DGIVGNMAENITKDPLI----LKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRV 269
+ +A + D + + + ++K NI Q++ + D++ HK +LLD+ LRD +
Sbjct: 284 APRIQQLAMRVMHDGGANVKKITIATPQEKHANIKQALFWADNMQHKRKLLDHWLRDSSI 343
Query: 270 GQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVA 329
QA+VF +T+ + D +A+ L GF A LHG L Q RNR L LR G+++ILVATDVA
Sbjct: 344 NQAIVFASTQVECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVA 403
Query: 330 ARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTK 389
ARGIDVP ITHVFNY LP EDY HRIGRTGRAGR G AV+ +R + IE +T+
Sbjct: 404 ARGIDVPTITHVFNYGLPMKAEDYTHRIGRTGRAGREGVAVTFAEFRDRRRVFDIEGYTR 463
Query: 390 QQIPIEVINGFEPKKRI 406
QQ E I G EP++R
Sbjct: 464 QQFKAETIPGMEPQQRF 480
>gi|91785132|ref|YP_560338.1| ATP-dependent RNA helicase 1 [Burkholderia xenovorans LB400]
gi|91689086|gb|ABE32286.1| Putative ATP-dependent RNA helicase 1 [Burkholderia xenovorans
LB400]
Length = 543
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 179/402 (44%), Positives = 249/402 (61%), Gaps = 22/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ ++GYT PT +Q QAIPA ++G DL+ +QTG+GKTA F LP L
Sbjct: 23 MSFDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL 82
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ SS P + N + + R L+LTPTRELA QV + Y
Sbjct: 83 QRLNSS----PAVA---NGSGKRAV-------------RALILTPTRELAAQVEESVRAY 122
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+K +K+ + GG+ Q+ L +I++ATPGRL+DHM I+ SHL+ILVLDE
Sbjct: 123 GKYLK-LKSTVMFGGVGINPQIGALRSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDE 181
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + +A+N+ P +++V
Sbjct: 182 ADRMLDMGFIHDIKRVLAKLPPKRQNLLFSATFSDEIKTLADNLLDSPALIEVARRNTTA 241
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I VD K LL +L++ Q +VFT TK A+ +A++L G A +H
Sbjct: 242 ETVAQKIHPVDRD-KKRELLTHLIKQHNWFQVLVFTRTKHGANRLAEQLTKDGISALAIH 300
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + G +++LVATD+AARGID+ + HV NYDLP PEDYVHRIGRT
Sbjct: 301 GNKSQSARTRALAEFKDGTLQVLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRT 360
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G AVSLV E +K IE+ K+ +P EV+ GFEP
Sbjct: 361 GRAGATGEAVSLVCVDELQLLKDIEKLIKRPVPQEVVAGFEP 402
>gi|238028570|ref|YP_002912801.1| ATP-dependent RNA helicase [Burkholderia glumae BGR1]
gi|237877764|gb|ACR30097.1| ATP-dependent RNA helicase [Burkholderia glumae BGR1]
Length = 483
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 249/402 (61%), Gaps = 23/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ ++GY +PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFASLGLAEPLVRAVNELGYNEPTPIQTQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + + N N + R L+LTPTRELA QV + Y
Sbjct: 61 QRLNAFQPA--------NANGKRAV-------------RALILTPTRELAAQVEESVRAY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+K +++ + GG+ Q+ L R +I++ATPGRL+DHM I+ S L ILVLDE
Sbjct: 100 GKYLK-LRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDVSQLDILVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + +A+++ P +++V
Sbjct: 159 ADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTA 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q I VD K +L +L+R+ Q +VFT TK A+ +A++L G A +H
Sbjct: 219 ETIAQKIHPVDRD-RKREMLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISALAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + G +++LVATD+AARGID+ + HV NY+LP PEDYVHRIGRT
Sbjct: 278 GNKSQSARTRALSEFKAGTLQVLVATDIAARGIDIDQLPHVVNYELPNVPEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG NG AVSLV E+ ++ IER K++IP +VI GFEP
Sbjct: 338 GRAGANGEAVSLVCVDEKPLLRDIERLIKREIPQQVIAGFEP 379
>gi|445495878|ref|ZP_21462922.1| ATP-dependent RNA helicase RhlE [Janthinobacterium sp. HH01]
gi|444792039|gb|ELX13586.1| ATP-dependent RNA helicase RhlE [Janthinobacterium sp. HH01]
Length = 463
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 178/415 (42%), Positives = 249/415 (60%), Gaps = 21/415 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL + +++A+ + GYT PT +Q+QAIPA ++G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFSSLGLSDAIVRAVTETGYTTPTPIQQQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP-RMLVLTPTRELALQVTAATER 119
H+ ++ N + A+P R L+LTPTRELA QV +
Sbjct: 61 HRLSTDANGAAITSNTT------------------ARPIRALILTPTRELAAQVEESVRT 102
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
YG Y K + + I GG+ Q++ L +IL+ATPGRL+DHM +N S ++IL+LD
Sbjct: 103 YGKYTK-LNSTVIFGGVGINPQIKQLKHGVDILVATPGRLLDHMEQRTVNLSKVEILILD 161
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI DI+K++ A P RQ +LFSAT + +A+ + P ++V
Sbjct: 162 EADRMLDMGFIRDIKKVLAALPPKRQNLLFSATFSDEIKALADGLLNKPATIEVARRNST 221
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+ I Q I VD K+ +L +L++ Q +VFT TK A+ + ++L G A +
Sbjct: 222 VEVIAQKIHPVDRD-KKHPMLAHLIKANDWHQVLVFTRTKHGANKLVEQLGHDGIGAMAI 280
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HG+ Q+AR + L + ++++LVATD+AARGID+ + HV NYDLP PEDYVHRIGR
Sbjct: 281 HGNKSQSARTKALSEFKDNKLQVLVATDIAARGIDIDQLPHVVNYDLPNIPEDYVHRIGR 340
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRYR 414
TGRAG G AVSLV E +K IE+ KQ +P EVI GFEP R + R
Sbjct: 341 TGRAGATGEAVSLVCVDEHEMLKDIEKLIKQTLPREVIPGFEPDLNARAQPVQLR 395
>gi|444919933|ref|ZP_21239777.1| ATP-dependent RNA helicase rhlE [Wohlfahrtiimonas chitiniclastica
SH04]
gi|444508800|gb|ELV08968.1| ATP-dependent RNA helicase rhlE [Wohlfahrtiimonas chitiniclastica
SH04]
Length = 518
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 182/403 (45%), Positives = 247/403 (61%), Gaps = 11/403 (2%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F + LH ++L AL ++GY PT VQ + +P A++G+DL+VSSQTGSGKTAAF+LP L
Sbjct: 1 MLFSDLDLHPILLNALNEMGYQSPTPVQSEVLPIALTGQDLMVSSQTGSGKTAAFLLPVL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTH-KERLRFKPAQPRMLVLTPTRELALQVTAATER 119
+ +P K+ + + KE ++ P+ LVL PTRELA QV R
Sbjct: 61 NILLD----LPAEKRPFRPKGERGFGKMKENIK-----PKALVLCPTRELAQQVAKEAIR 111
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
K ++ +++GGMPY +Q++ L N IL+ATPGRL+D N IN S ++ V D
Sbjct: 112 LKGMAKGVRISTVVGGMPYGQQIRELE-NVTILVATPGRLLDLYNQKVINLSEVEFFVAD 170
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLD+GF D+E I A Q ++FSAT + +AE + +P ++++S
Sbjct: 171 EADRMLDLGFAEDLELIHKACTNCEQNLMFSATFPKNIMRLAEEMMTEPHKIELSSKSIL 230
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+NITQ I F DD H+ LL + LR + QAVVFT T+ +++ IA+ L GF L
Sbjct: 231 NENITQQINFADDRSHQRELLMHWLRSPSLDQAVVFTPTQIESEEIAELLEDEGFSVTFL 290
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HG + Q RNR LE LR+GR KILVATDVAARGID+ +THV N LP EDYVHRIGR
Sbjct: 291 HGGIPQKVRNRRLETLRKGRTKILVATDVAARGIDIATVTHVINIGLPMKAEDYVHRIGR 350
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
TGRAGR G A+SLVN + ++ I +T +I + + G EP
Sbjct: 351 TGRAGRKGDAISLVNVRDHKRVRDISDYTSFKIDVLTVEGLEP 393
>gi|344173743|emb|CCA88920.1| ATP-dependent RNA helicase hydrolase [Ralstonia syzygii R24]
Length = 549
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 177/407 (43%), Positives = 252/407 (61%), Gaps = 21/407 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL + +++A+ ++GY +PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYT-HKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
H+ ++ + NK++T H R R LVLTPTRELA QV +
Sbjct: 61 HRLSAVQP-------------NKVHTSHGMRYPI-----RALVLTPTRELAAQVEESVRA 102
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
YG Y+ +K++ + GG+ Q+ L R +I++ATPGRL+DH+ I+ SH+++LVLD
Sbjct: 103 YGKYLP-LKSMVMFGGVGINPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLD 161
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DI KI++ P RQ +LFSAT + +A+ + P +++V
Sbjct: 162 EADRMLDMGFIHDIRKILNILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTT 221
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+ + Q I VD K LL L+RD Q +VFT TK A+ +A++L G A +
Sbjct: 222 AETVEQRIYPVDR-ERKRELLATLVRDNDWHQVLVFTRTKHGANRLAEQLTRDGIPALAI 280
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HG+ Q+AR R L + G +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGR
Sbjct: 281 HGNKSQSARTRALSEFKAGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGR 340
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
TGRAG G A+SLV E ++ IER K+++P V+ GFEP I
Sbjct: 341 TGRAGAQGEAISLVCVDEHGLLRDIERLIKRELPRTVLPGFEPDPTI 387
>gi|301632627|ref|XP_002945383.1| PREDICTED: ATP-dependent RNA helicase rhlE-like [Xenopus (Silurana)
tropicalis]
Length = 564
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 186/430 (43%), Positives = 254/430 (59%), Gaps = 26/430 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAI-----SGR--DLIVSSQTGSGKTAA 54
F +GL +++A+ +GYT+PT VQE+AIP A+ +GR DL+VSSQTGSGKTAA
Sbjct: 33 GFVRLGLATELVQAVRDLGYTQPTAVQEKAIPMAMGRDAEAGRFIDLMVSSQTGSGKTAA 92
Query: 55 FMLPALHKF--------ASSKNKIPVMKKNLNQNNNKIYTHKER------LRFKPAQPRM 100
F+LP LH AS + + + R FK A P
Sbjct: 93 FLLPVLHTLVRQQAGQQASERAEYERLCAEATARGEATPKRTRRKDPTNPRNFKAAVPGA 152
Query: 101 LVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160
L+L PTRELA QV + K ++ +++GGMPY Q+ L +N +++ATPGRL+
Sbjct: 153 LILCPTRELAQQVAHDAIDLVRHCKGLRVANVVGGMPYQLQIAKL-QNANLVVATPGRLL 211
Query: 161 DHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNM 220
D S +I +Q LV+DEADRMLD+GF +D+ +I T +QTM+FSAT + +
Sbjct: 212 DLQRSMQIKLDQVQFLVVDEADRMLDLGFSDDLAEINQLTSQRKQTMMFSATFAPRIQQL 271
Query: 221 AENITKDP----LILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFT 276
A + D L ++S ++K NI Q + + D+ HK ++LD+ LRD + QA+VF
Sbjct: 272 AMRVMHDGGSAVQKLTIDSPQEKHANIKQVLFWADNAQHKRKMLDHWLRDASIDQAIVFA 331
Query: 277 ATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVP 336
+T+ + D +A+ L GF A LHG L Q RNR L LR G+++ILVATDVAARGIDVP
Sbjct: 332 STQMECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGIDVP 391
Query: 337 AITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEV 396
ITHVFN+ LP EDY HRIGRTGRAGR+G AV+ +R I IE +++Q EV
Sbjct: 392 TITHVFNFGLPMKAEDYTHRIGRTGRAGRDGLAVTFAEFRDRRKIFDIEGYSRQPFKAEV 451
Query: 397 INGFEPKKRI 406
I G EP +R
Sbjct: 452 IPGMEPTQRF 461
>gi|344167813|emb|CCA80061.1| ATP-dependent RNA helicase hydrolase [blood disease bacterium R229]
Length = 543
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 177/407 (43%), Positives = 252/407 (61%), Gaps = 21/407 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL + +++A+ ++GY +PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYT-HKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
H+ ++ + NK++T H R R LVLTPTRELA QV +
Sbjct: 61 HRLSAVQP-------------NKVHTSHGMRYPI-----RALVLTPTRELAAQVEESVRA 102
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
YG Y+ +K++ + GG+ Q+ L R +I++ATPGRL+DH+ I+ SH+++LVLD
Sbjct: 103 YGKYLP-LKSMVMFGGVGINPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLD 161
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DI KI++ P RQ +LFSAT + +A+ + P +++V
Sbjct: 162 EADRMLDMGFIHDIRKILNILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTT 221
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+ + Q I VD K LL L+RD Q +VFT TK A+ +A++L G A +
Sbjct: 222 AETVEQRIYPVDR-ERKRELLAKLVRDNDWHQVLVFTRTKHGANRLAEQLTRDGIPALAI 280
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HG+ Q+AR R L + G +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGR
Sbjct: 281 HGNKSQSARTRALSEFKAGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGR 340
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
TGRAG G A+SLV E ++ IER K+++P V+ GFEP I
Sbjct: 341 TGRAGAQGEAISLVCVDEHGLLRDIERLIKRELPRTVLPGFEPDPTI 387
>gi|300692445|ref|YP_003753440.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum PSI07]
gi|299079505|emb|CBJ52183.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum PSI07]
Length = 549
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 177/407 (43%), Positives = 252/407 (61%), Gaps = 21/407 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL + +++A+ ++GY +PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYT-HKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
H+ ++ + NK++T H R R LVLTPTRELA QV +
Sbjct: 61 HRLSAVQP-------------NKVHTSHGMRYPI-----RALVLTPTRELAAQVEESVRA 102
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
YG Y+ +K++ + GG+ Q+ L R +I++ATPGRL+DH+ I+ SH+++LVLD
Sbjct: 103 YGKYLP-LKSMVMFGGVGINPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLD 161
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DI KI++ P RQ +LFSAT + +A+ + P +++V
Sbjct: 162 EADRMLDMGFIHDIRKILNILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTT 221
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+ + Q I VD K LL L+RD Q +VFT TK A+ +A++L G A +
Sbjct: 222 AETVEQRIYPVDR-ERKRELLAKLVRDNDWHQVLVFTRTKHGANRLAEQLTRDGIPALAI 280
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HG+ Q+AR R L + G +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGR
Sbjct: 281 HGNKSQSARTRALSEFKAGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGR 340
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
TGRAG G A+SLV E ++ IER K+++P V+ GFEP I
Sbjct: 341 TGRAGAQGEAISLVCVDEHGLLRDIERLIKRELPRTVLPGFEPDPTI 387
>gi|323137351|ref|ZP_08072429.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
49242]
gi|322397338|gb|EFX99861.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
49242]
Length = 450
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 168/390 (43%), Positives = 249/390 (63%), Gaps = 25/390 (6%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F +GL E++L+AL + GY PT +Q QAIP + GRDL+ +QTG+GKTAAF LP L++
Sbjct: 4 FSDLGLAEILLRALDREGYETPTSIQAQAIPYLMEGRDLLGIAQTGTGKTAAFALPILNR 63
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A+ +R R P R LVL PTRELA Q+ + YG
Sbjct: 64 LAA-----------------------DRRRPAPFTARTLVLAPTRELAAQIADSFRAYGQ 100
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+M+ + I+GG+ + Q+ +L+R ++L+ATPGRL+DH+ SGK+ + ++LVLDEAD
Sbjct: 101 FMRPSVGV-IVGGVSHRPQIDMLARGLDVLVATPGRLLDHIASGKLKLAATEVLVLDEAD 159
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
MLD+GFI I +IV P RQT+LFSAT+ + +AE++ ++P + V + +
Sbjct: 160 HMLDLGFIVPIRQIVAKLPKKRQTLLFSATMPKEIAGLAEDMLQNPAQVSVTPVATTAER 219
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
+ Q + VD ++ L++ L+ D V +A+VFT TKR AD +A+ L+ +G A +HG+
Sbjct: 220 VAQHVFLVDGGAKRDMLIE-LMNDADVSRAIVFTRTKRGADRVAEHLDAAGVGAEAIHGN 278
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
Q+ R R L+ R+GR ++LVATD+AARGIDV +THV NY+LP+ PE YVHRIGRT R
Sbjct: 279 KSQSQRIRALDAFRKGRTRVLVATDIAARGIDVDGVTHVVNYELPETPEAYVHRIGRTAR 338
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQI 392
AG +G A+SL ++ ER +++IE+ T+Q +
Sbjct: 339 AGASGRAISLCDNGERQLLRQIEKLTRQTL 368
>gi|78067467|ref|YP_370236.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
gi|77968212|gb|ABB09592.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
Length = 484
Score = 324 bits (831), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 249/402 (61%), Gaps = 23/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+S+GL E ++KA+ ++GYT PT +Q+QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ ++T R R L+LTPTRELA QV + Y
Sbjct: 61 QR---------------------LHTFYADNRGAKRAVRALILTPTRELAAQVEESVRAY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+K +++ + GG+ Q+ L R +I++ATPGRL+DHM I+ S+L ILVLDE
Sbjct: 100 SKYLK-LRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + +A+++ P +++V
Sbjct: 159 ADRMLDMGFIHDIKRVLAKLPPQRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTA 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+++ Q I VD K LL +L+R+ Q +VFT TK A+ +A++L G A +H
Sbjct: 219 ESVAQKIHPVDRD-RKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 278 GNKSQSARTRALAEFKNSTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G AVSLV E+ ++ IER K++IP EVI GFEP
Sbjct: 338 GRAGATGEAVSLVCVDEKQLLRDIERLIKREIPQEVIAGFEP 379
>gi|187927522|ref|YP_001898009.1| DEAD/DEAH box helicase [Ralstonia pickettii 12J]
gi|404394476|ref|ZP_10986280.1| hypothetical protein HMPREF0989_04985 [Ralstonia sp. 5_2_56FAA]
gi|187724412|gb|ACD25577.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J]
gi|404279086|gb|EJZ44455.1| hypothetical protein HMPREF0989_04985 [Ralstonia sp. 5_2_56FAA]
Length = 560
Score = 324 bits (831), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 176/406 (43%), Positives = 253/406 (62%), Gaps = 19/406 (4%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL + +++A+ ++GY +PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILRGGDLLAGAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ ++++ NK+ T + +RF R LVLTPTRELA QV + Y
Sbjct: 61 HRLSAAQP-------------NKVQT-PQGMRFPI---RALVLTPTRELAAQVEESVRAY 103
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ +K++ + GG+ Q+ L R +I++ATPGRL+DH+ I+ SH+++LVLDE
Sbjct: 104 GKYLP-LKSMVMFGGVGINPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDE 162
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI KI++ P RQ +LFSAT + +A+ + P +++V
Sbjct: 163 ADRMLDMGFIHDIRKILNILPAKRQNLLFSATFSDDIRELADRLLDKPALIEVARRNTTA 222
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I VD K LL L+RD Q +VFT TK A+ +A++L G A +H
Sbjct: 223 ETVEQRIYPVDR-ERKRELLAKLVRDNDWHQVLVFTRTKHGANRLAEQLTRDGIPALAIH 281
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + G +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 282 GNKSQSARTRALTEFKAGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 341
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
GRAG G A+SLV E ++ IER K+++P V+ FEP I
Sbjct: 342 GRAGAQGEAISLVCVDEHGLLRDIERLIKRELPRTVLERFEPDPTI 387
>gi|206559326|ref|YP_002230087.1| putative ATP-dependent RNA helicase 1 [Burkholderia cenocepacia
J2315]
gi|421868477|ref|ZP_16300125.1| ATP-dependent RNA helicase RhlE [Burkholderia cenocepacia H111]
gi|198035364|emb|CAR51239.1| putative ATP-dependent RNA helicase 1 [Burkholderia cenocepacia
J2315]
gi|358071499|emb|CCE51003.1| ATP-dependent RNA helicase RhlE [Burkholderia cenocepacia H111]
Length = 477
Score = 324 bits (831), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 248/402 (61%), Gaps = 23/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+S+GL E ++KA+ ++GYT PT +Q+QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ ++T R R L+LTPTRELA QV + Y
Sbjct: 61 QR---------------------LHTFYAEHRGAKRAVRALILTPTRELAAQVEESVRAY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+K +++ + GG+ Q+ L R +I++ATPGRL+DHM I+ S L ILVLDE
Sbjct: 100 SKYLK-LRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + +A+++ P +++V
Sbjct: 159 ADRMLDMGFIHDIKRVLAKLPPQRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTA 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+++ Q I VD K LL +L+R+ Q +VFT TK A+ +A++L G A +H
Sbjct: 219 ESVAQKIHPVDRD-RKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 278 GNKSQSARTRALAEFKNSTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G AVSLV E+ ++ IER K++IP EVI GFEP
Sbjct: 338 GRAGATGEAVSLVCVDEKQLLRDIERLIKREIPQEVIAGFEP 379
>gi|170734034|ref|YP_001765981.1| DEAD/DEAH box helicase [Burkholderia cenocepacia MC0-3]
gi|169817276|gb|ACA91859.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
MC0-3]
Length = 486
Score = 324 bits (831), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 248/402 (61%), Gaps = 23/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+S+GL E ++KA+ ++GYT PT +Q+QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ ++T R R L+LTPTRELA QV + Y
Sbjct: 61 QR---------------------LHTFYAEHRGAKRAVRALILTPTRELAAQVEESVRAY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+K +++ + GG+ Q+ L R +I++ATPGRL+DHM I+ S L ILVLDE
Sbjct: 100 SKYLK-LRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + +A+++ P +++V
Sbjct: 159 ADRMLDMGFIHDIKRVLAKLPPQRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTA 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+++ Q I VD K LL +L+R+ Q +VFT TK A+ +A++L G A +H
Sbjct: 219 ESVAQKIHPVDRD-RKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 278 GNKSQSARTRALAEFKNSTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G AVSLV E+ ++ IER K++IP EVI GFEP
Sbjct: 338 GRAGATGEAVSLVCVDEKQLLRDIERLIKREIPQEVIAGFEP 379
>gi|121607326|ref|YP_995133.1| DEAD/DEAH box helicase domain-containing protein [Verminephrobacter
eiseniae EF01-2]
gi|121551966|gb|ABM56115.1| DEAD/DEAH box helicase domain protein [Verminephrobacter eiseniae
EF01-2]
Length = 609
Score = 324 bits (831), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 182/434 (41%), Positives = 256/434 (58%), Gaps = 36/434 (8%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGR-------DLIVSSQTGSGKTAA 54
F +GL +++A+ +GYT PT VQ +AIP A+ DL+VSSQTGSGKTAA
Sbjct: 77 GFIEMGLAPELVRAVADLGYTGPTIVQRKAIPLAMGAGHGATRFIDLMVSSQTGSGKTAA 136
Query: 55 FMLPALHKFASSKNKIPVMKKNLN------------------QNNNKIYTHKERLRFKPA 96
++LP LH + ++ ++ + + ++T FK A
Sbjct: 137 YLLPLLHTLIGQQAQVQAQERAALERAAADAATRDAPAPKRPKRKDPMHTRH----FKAA 192
Query: 97 QPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLS-RNPEILLAT 155
P L+L PTRELA QV + + ++ +++GGMPY QMQ+ +N +++AT
Sbjct: 193 TPGALILCPTRELAQQVAHDAIDLARHCRGLRVANVVGGMPY--QMQIAKLQNASLVVAT 250
Query: 156 PGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDG 215
PGRL+D S +I +Q LV+DEADRMLD+GF +D+ +I T +QTM+FSAT
Sbjct: 251 PGRLLDLQRSMQIKLDKVQFLVVDEADRMLDLGFSDDLAEINQLTSQRQQTMMFSATFAP 310
Query: 216 IVGNMAENITKDP----LILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQ 271
+ +A + D L ++S ++K NI Q + + D+ HK +LLD+ LRD ++ Q
Sbjct: 311 RIQQLALRVMHDGGSSVQKLTIDSPQEKHANIRQMLYWADNAQHKRKLLDHWLRDTQINQ 370
Query: 272 AVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAAR 331
A+VF +T+ + D +A L +GF A LHG L+Q RNR L LR G+++ILVATDVAAR
Sbjct: 371 AIVFASTQVECDALAGELQQAGFSAVALHGALNQGLRNRRLTALRDGQVQILVATDVAAR 430
Query: 332 GIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQ 391
GIDVP ITHVFN+ LP EDY HRIGRTGRAGR+G A+S +R I IE F++Q
Sbjct: 431 GIDVPTITHVFNFGLPMKAEDYTHRIGRTGRAGRDGLAISFAEFRDRRKIHDIESFSRQS 490
Query: 392 IPIEVINGFEPKKR 405
EVI G EP +R
Sbjct: 491 FKAEVIPGLEPAQR 504
>gi|385208130|ref|ZP_10034998.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
gi|385180468|gb|EIF29744.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
Length = 520
Score = 324 bits (831), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 178/402 (44%), Positives = 250/402 (62%), Gaps = 22/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ ++GYT PT +Q QAIPA ++G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSEQLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ SS P + N + + R L+LTPTRELA QV + Y
Sbjct: 61 QRLNSS----PAVA---NGSGKRAV-------------RALILTPTRELAAQVEESVRAY 100
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+K +K+ + GG+ Q+ L +I++ATPGRL+DHM I+ SHL+ILVLDE
Sbjct: 101 GKYLK-LKSTVMFGGVGINPQIGALRSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDE 159
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + +A+N+ P +++V
Sbjct: 160 ADRMLDMGFIHDIKRVLAKLPPKRQNLLFSATFSDEIKTLADNLLDSPALIEVARRNTTA 219
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+++ Q I VD K LL +L++ Q +VFT TK A+ +A++L G + +H
Sbjct: 220 ESVAQKIHPVDRD-KKRELLTHLIKQHNWFQVLVFTRTKHGANRLAEQLTKDGINSLAIH 278
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + G +++LVATD+AARGID+ + HV NYDLP PEDYVHRIGRT
Sbjct: 279 GNKSQSARTRALAEFKDGTLQVLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRT 338
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G AVSLV E +K IE+ K+ +P EV+ GFEP
Sbjct: 339 GRAGATGEAVSLVCVDELQLLKDIEKLIKRPVPQEVVAGFEP 380
>gi|444357741|ref|ZP_21159253.1| DEAD/DEAH box helicase, partial [Burkholderia cenocepacia BC7]
gi|443605729|gb|ELT73559.1| DEAD/DEAH box helicase, partial [Burkholderia cenocepacia BC7]
Length = 403
Score = 324 bits (830), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 248/402 (61%), Gaps = 23/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+S+GL E ++KA+ ++GYT PT +Q+QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ ++T R R L+LTPTRELA QV + Y
Sbjct: 61 QR---------------------LHTFYAEHRGAKRAVRALILTPTRELAAQVEESVRAY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+K +++ + GG+ Q+ L R +I++ATPGRL+DHM I+ S L ILVLDE
Sbjct: 100 SKYLK-LRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + +A+++ P +++V
Sbjct: 159 ADRMLDMGFIHDIKRVLAKLPPQRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTA 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+++ Q I VD K LL +L+R+ Q +VFT TK A+ +A++L G A +H
Sbjct: 219 ESVAQKIHPVDRD-RKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 278 GNKSQSARTRALAEFKNSTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G AVSLV E+ ++ IER K++IP EVI GFEP
Sbjct: 338 GRAGATGEAVSLVCVDEKQLLRDIERLIKREIPQEVIAGFEP 379
>gi|167903972|ref|ZP_02491177.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
NCTC 13177]
Length = 430
Score = 324 bits (830), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 247/402 (61%), Gaps = 23/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ ++GYT+PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + Y R R L+LTPTRELA QV + Y
Sbjct: 61 QRL------------------HAFYAENRSARRAV---RALILTPTRELAAQVEESVRAY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+K +++ + GG+ Q+ L R +I++ATPGRL+DHM I+ S L ILVLDE
Sbjct: 100 SKYVK-LRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + ++A+++ P +++V
Sbjct: 159 ADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTA 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q I VD K LL +L+R+ Q +VFT TK A+ +A++L G A +H
Sbjct: 219 ETIAQKIHPVDRD-RKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 278 GNKSQSARTRALSEFKSSTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG NG AVSLV E+ ++ IER K++IP +VI GFEP
Sbjct: 338 GRAGANGEAVSLVCVDEKQLLRDIERLIKREIPQQVIPGFEP 379
>gi|421472538|ref|ZP_15920727.1| DEAD/DEAH box helicase, partial [Burkholderia multivorans ATCC
BAA-247]
gi|400222909|gb|EJO53257.1| DEAD/DEAH box helicase, partial [Burkholderia multivorans ATCC
BAA-247]
Length = 407
Score = 324 bits (830), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 177/402 (44%), Positives = 247/402 (61%), Gaps = 23/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+S+GL E ++KA+ ++GYT PT +Q+QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + YT R R L+LTPTRELA QV + Y
Sbjct: 61 QRL------------------HTFYTEHRSAR---RAVRALILTPTRELAAQVEESVRAY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+K +++ + GG+ Q+ L R +I++ATPGRL+DHM I+ S L ILVLDE
Sbjct: 100 SKYLK-LRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + +A+++ P +++V
Sbjct: 159 ADRMLDMGFIHDIKRVLAKLPPRRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTA 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I VD K LL +L+R+ Q +VFT TK A+ +A++L G A +H
Sbjct: 219 ETVAQKIHPVDRD-RKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 278 GNKSQSARTRALAEFKNNTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G AVSLV E+ ++ IER K++IP EVI GFEP
Sbjct: 338 GRAGATGEAVSLVCVDEKQLLRDIERLIKREIPREVIAGFEP 379
>gi|76811549|ref|YP_332327.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b]
gi|126454229|ref|YP_001065030.1| ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 1106a]
gi|242316165|ref|ZP_04815181.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
1106b]
gi|254196606|ref|ZP_04903030.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
S13]
gi|254260651|ref|ZP_04951705.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
1710a]
gi|403517400|ref|YP_006651533.1| ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei BPC006]
gi|76581002|gb|ABA50477.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b]
gi|126227871|gb|ABN91411.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
1106a]
gi|169653349|gb|EDS86042.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
S13]
gi|242139404|gb|EES25806.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
1106b]
gi|254219340|gb|EET08724.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
1710a]
gi|403073043|gb|AFR14623.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
BPC006]
Length = 485
Score = 324 bits (830), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 247/402 (61%), Gaps = 23/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ ++GYT+PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + Y R R L+LTPTRELA QV + Y
Sbjct: 61 QRL------------------HAFYAENRSARRAV---RALILTPTRELAAQVEESVRAY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+K +++ + GG+ Q+ L R +I++ATPGRL+DHM I+ S L ILVLDE
Sbjct: 100 SKYVK-LRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + ++A+++ P +++V
Sbjct: 159 ADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTA 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q I VD K LL +L+R+ Q +VFT TK A+ +A++L G A +H
Sbjct: 219 ETIAQKIHPVDRD-RKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 278 GNKSQSARTRALSEFKSSTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG NG AVSLV E+ ++ IER K++IP +VI GFEP
Sbjct: 338 GRAGANGEAVSLVCVDEKQLLRDIERLIKREIPQQVIPGFEP 379
>gi|217419732|ref|ZP_03451238.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
576]
gi|217397036|gb|EEC37052.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
576]
Length = 485
Score = 324 bits (830), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 247/402 (61%), Gaps = 23/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ ++GYT+PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + Y R R L+LTPTRELA QV + Y
Sbjct: 61 QRL------------------HAFYAENRSARRAV---RALILTPTRELAAQVEESVRAY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+K +++ + GG+ Q+ L R +I++ATPGRL+DHM I+ S L ILVLDE
Sbjct: 100 SKYVK-LRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + ++A+++ P +++V
Sbjct: 159 ADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTA 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q I VD K LL +L+R+ Q +VFT TK A+ +A++L G A +H
Sbjct: 219 ETIAQKIHPVDRD-RKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 278 GNKSQSARTRALSEFKSSTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG NG AVSLV E+ ++ IER K++IP +VI GFEP
Sbjct: 338 GRAGANGEAVSLVCVDEKQLLRDIERLIKREIPQQVIPGFEP 379
>gi|167835531|ref|ZP_02462414.1| putative ATP-dependent RNA helicase rhlE [Burkholderia
thailandensis MSMB43]
Length = 402
Score = 324 bits (830), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 177/402 (44%), Positives = 248/402 (61%), Gaps = 23/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ ++GYT+PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ ++T R R L+LTPTRELA QV + Y
Sbjct: 61 QR---------------------LHTFYAENRSARRAVRALILTPTRELAAQVEESVRAY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+K +++ + GG+ Q+ L R +I++ATPGRL+DHM I+ S L ILVLDE
Sbjct: 100 SKYVK-LRSAVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + ++A+++ P +++V
Sbjct: 159 ADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTA 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q I VD K LL +L+R+ Q +VFT TK A+ +A++L G A +H
Sbjct: 219 ETIAQKIHPVDRD-RKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLAKDGISAMAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 278 GNKSQSARTRALSEFKNSTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG NG AVSLV E+ ++ IER K++IP EVI GFEP
Sbjct: 338 GRAGANGEAVSLVCVDEKQLLRDIERLIKREIPQEVIPGFEP 379
>gi|237810939|ref|YP_002895390.1| ATP-dependent RNA helicase RhlE [Burkholderia pseudomallei MSHR346]
gi|237503374|gb|ACQ95692.1| ATP-dependent RNA helicase RhlE [Burkholderia pseudomallei MSHR346]
Length = 488
Score = 324 bits (830), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 247/402 (61%), Gaps = 23/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ ++GYT+PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + Y R R L+LTPTRELA QV + Y
Sbjct: 61 QRL------------------HAFYAENRSARRAV---RALILTPTRELAAQVEESVRAY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+K +++ + GG+ Q+ L R +I++ATPGRL+DHM I+ S L ILVLDE
Sbjct: 100 SKYVK-LRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + ++A+++ P +++V
Sbjct: 159 ADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTA 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q I VD K LL +L+R+ Q +VFT TK A+ +A++L G A +H
Sbjct: 219 ETIAQKIHPVDRD-RKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 278 GNKSQSARTRALSEFKSSTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG NG AVSLV E+ ++ IER K++IP +VI GFEP
Sbjct: 338 GRAGANGEAVSLVCVDEKQLLRDIERLIKREIPQQVIPGFEP 379
>gi|126440586|ref|YP_001057787.1| ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 668]
gi|126220079|gb|ABN83585.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
668]
Length = 485
Score = 324 bits (830), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 247/402 (61%), Gaps = 23/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ ++GYT+PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + Y R R L+LTPTRELA QV + Y
Sbjct: 61 QRL------------------HAFYAENRSARRAV---RALILTPTRELAAQVEESVRAY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+K +++ + GG+ Q+ L R +I++ATPGRL+DHM I+ S L ILVLDE
Sbjct: 100 SKYVK-LRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + ++A+++ P +++V
Sbjct: 159 ADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTA 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q I VD K LL +L+R+ Q +VFT TK A+ +A++L G A +H
Sbjct: 219 ETIAQKIHPVDRD-RKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 278 GNKSQSARTRALSEFKSSTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG NG AVSLV E+ ++ IER K++IP +VI GFEP
Sbjct: 338 GRAGANGEAVSLVCVDEKQLLRDIERLIKREIPQQVIPGFEP 379
>gi|107023606|ref|YP_621933.1| DEAD/DEAH box helicase [Burkholderia cenocepacia AU 1054]
gi|116690690|ref|YP_836313.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
cenocepacia HI2424]
gi|105893795|gb|ABF76960.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
1054]
gi|116648779|gb|ABK09420.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
HI2424]
Length = 486
Score = 324 bits (830), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 248/402 (61%), Gaps = 23/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+S+GL E ++KA+ ++GYT PT +Q+QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ ++T R R L+LTPTRELA QV + Y
Sbjct: 61 QR---------------------LHTFYAEHRGAKRAVRALILTPTRELAAQVEESVRAY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+K +++ + GG+ Q+ L R +I++ATPGRL+DHM I+ S L ILVLDE
Sbjct: 100 SKYLK-LRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + +A+++ P +++V
Sbjct: 159 ADRMLDMGFIHDIKRVLAKLPPQRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTA 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+++ Q I VD K LL +L+R+ Q +VFT TK A+ +A++L G A +H
Sbjct: 219 ESVAQKIHPVDRD-RKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 278 GNKSQSARTRALAEFKNSTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G AVSLV E+ ++ IER K++IP EVI GFEP
Sbjct: 338 GRAGATGEAVSLVCVDEKQLLRDIERLIKREIPQEVIAGFEP 379
>gi|167909652|ref|ZP_02496743.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
112]
Length = 419
Score = 324 bits (830), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 247/402 (61%), Gaps = 23/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ ++GYT+PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + Y R R L+LTPTRELA QV + Y
Sbjct: 61 QRL------------------HAFYAENRSAR---RAVRALILTPTRELAAQVEESVRAY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+K +++ + GG+ Q+ L R +I++ATPGRL+DHM I+ S L ILVLDE
Sbjct: 100 SKYVK-LRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + ++A+++ P +++V
Sbjct: 159 ADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTA 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q I VD K LL +L+R+ Q +VFT TK A+ +A++L G A +H
Sbjct: 219 ETIAQKIHPVDRD-RKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 278 GNKSQSARTRALSEFKSSTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG NG AVSLV E+ ++ IER K++IP +VI GFEP
Sbjct: 338 GRAGANGEAVSLVCVDEKQLLRDIERLIKREIPQQVIPGFEP 379
>gi|167892936|ref|ZP_02480338.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
7894]
Length = 416
Score = 324 bits (830), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 247/402 (61%), Gaps = 23/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ ++GYT+PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + Y R R L+LTPTRELA QV + Y
Sbjct: 61 QRL------------------HAFYAENRSAR---RAVRALILTPTRELAAQVEESVRAY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+K +++ + GG+ Q+ L R +I++ATPGRL+DHM I+ S L ILVLDE
Sbjct: 100 SKYVK-LRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + ++A+++ P +++V
Sbjct: 159 ADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTA 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q I VD K LL +L+R+ Q +VFT TK A+ +A++L G A +H
Sbjct: 219 ETIAQKIHPVDRD-RKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 278 GNKSQSARTRALSEFKSSTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG NG AVSLV E+ ++ IER K++IP +VI GFEP
Sbjct: 338 GRAGANGEAVSLVCVDEKQLLRDIERLIKREIPQQVIPGFEP 379
>gi|167737241|ref|ZP_02410015.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
14]
gi|167822848|ref|ZP_02454319.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
9]
Length = 414
Score = 324 bits (830), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 247/402 (61%), Gaps = 23/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ ++GYT+PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + Y R R L+LTPTRELA QV + Y
Sbjct: 61 QRL------------------HAFYAENRSAR---RAVRALILTPTRELAAQVEESVRAY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+K +++ + GG+ Q+ L R +I++ATPGRL+DHM I+ S L ILVLDE
Sbjct: 100 SKYVK-LRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + ++A+++ P +++V
Sbjct: 159 ADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTA 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q I VD K LL +L+R+ Q +VFT TK A+ +A++L G A +H
Sbjct: 219 ETIAQKIHPVDRD-RKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 278 GNKSQSARTRALSEFKSSTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG NG AVSLV E+ ++ IER K++IP +VI GFEP
Sbjct: 338 GRAGANGEAVSLVCVDEKQLLRDIERLIKREIPQQVIPGFEP 379
>gi|53718338|ref|YP_107324.1| ATP-dependent RNA helicase 1 [Burkholderia pseudomallei K96243]
gi|53724700|ref|YP_102079.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
gi|67641488|ref|ZP_00440266.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei GB8 horse 4]
gi|126450332|ref|YP_001081986.1| ATP-dependent RNA helicase rhlE [Burkholderia mallei NCTC 10247]
gi|134279667|ref|ZP_01766379.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
305]
gi|226196769|ref|ZP_03792349.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
Pakistan 9]
gi|386862863|ref|YP_006275812.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1026b]
gi|418392348|ref|ZP_12968130.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 354a]
gi|418537531|ref|ZP_13103166.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1026a]
gi|418541949|ref|ZP_13107410.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1258a]
gi|418548277|ref|ZP_13113396.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1258b]
gi|418554393|ref|ZP_13119180.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 354e]
gi|52208752|emb|CAH34688.1| putative ATP-dependent RNA helicase 1 [Burkholderia pseudomallei
K96243]
gi|52428123|gb|AAU48716.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
gi|126243202|gb|ABO06295.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10247]
gi|134248867|gb|EBA48949.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
305]
gi|225931300|gb|EEH27307.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
Pakistan 9]
gi|238522432|gb|EEP85876.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei GB8 horse 4]
gi|385349447|gb|EIF56014.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1026a]
gi|385356616|gb|EIF62709.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1258a]
gi|385358294|gb|EIF64306.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1258b]
gi|385370257|gb|EIF75512.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 354e]
gi|385375424|gb|EIF80195.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 354a]
gi|385659991|gb|AFI67414.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1026b]
Length = 485
Score = 324 bits (830), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 247/402 (61%), Gaps = 23/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ ++GYT+PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + Y R R L+LTPTRELA QV + Y
Sbjct: 61 QRL------------------HAFYAENRSARRAV---RALILTPTRELAAQVEESVRAY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+K +++ + GG+ Q+ L R +I++ATPGRL+DHM I+ S L ILVLDE
Sbjct: 100 SKYVK-LRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + ++A+++ P +++V
Sbjct: 159 ADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTA 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q I VD K LL +L+R+ Q +VFT TK A+ +A++L G A +H
Sbjct: 219 ETIAQKIHPVDRD-RKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 278 GNKSQSARTRALSEFKSSTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG NG AVSLV E+ ++ IER K++IP +VI GFEP
Sbjct: 338 GRAGANGEAVSLVCVDEKQLLRDIERLIKREIPQQVIPGFEP 379
>gi|424902243|ref|ZP_18325759.1| putative ATP-dependent RNA helicase rhlE [Burkholderia
thailandensis MSMB43]
gi|390932618|gb|EIP90018.1| putative ATP-dependent RNA helicase rhlE [Burkholderia
thailandensis MSMB43]
Length = 482
Score = 324 bits (830), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 177/402 (44%), Positives = 247/402 (61%), Gaps = 23/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ ++GYT+PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + Y R R L+LTPTRELA QV + Y
Sbjct: 61 QRL------------------HTFYAENRSARRAV---RALILTPTRELAAQVEESVRAY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+K +++ + GG+ Q+ L R +I++ATPGRL+DHM I+ S L ILVLDE
Sbjct: 100 SKYVK-LRSAVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + ++A+++ P +++V
Sbjct: 159 ADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTA 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q I VD K LL +L+R+ Q +VFT TK A+ +A++L G A +H
Sbjct: 219 ETIAQKIHPVDRD-RKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLAKDGISAMAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 278 GNKSQSARTRALSEFKNSTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG NG AVSLV E+ ++ IER K++IP EVI GFEP
Sbjct: 338 GRAGANGEAVSLVCVDEKQLLRDIERLIKREIPQEVIPGFEP 379
>gi|167718208|ref|ZP_02401444.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
DM98]
Length = 434
Score = 323 bits (829), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 247/402 (61%), Gaps = 23/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ ++GYT+PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + Y R R L+LTPTRELA QV + Y
Sbjct: 61 QRL------------------HAFYAENRSARRAV---RALILTPTRELAAQVEESVRAY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+K +++ + GG+ Q+ L R +I++ATPGRL+DHM I+ S L ILVLDE
Sbjct: 100 SKYVK-LRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + ++A+++ P +++V
Sbjct: 159 ADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTA 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q I VD K LL +L+R+ Q +VFT TK A+ +A++L G A +H
Sbjct: 219 ETIAQKIHPVDRD-RKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 278 GNKSQSARTRALSEFKSSTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG NG AVSLV E+ ++ IER K++IP +VI GFEP
Sbjct: 338 GRAGANGEAVSLVCVDEKQLLRDIERLIKREIPQQVIPGFEP 379
>gi|390571862|ref|ZP_10252096.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
gi|389936192|gb|EIM98086.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
Length = 513
Score = 323 bits (829), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 179/413 (43%), Positives = 249/413 (60%), Gaps = 36/413 (8%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ ++GYT PT +Q+QAIPA ++G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSEQLVRAVNELGYTSPTPIQQQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP------RMLVLTPTRELALQVT 114
+RL P P R L+LTPTRELA QV
Sbjct: 61 ----------------------------QRLLTMPPAPGGKRVVRALILTPTRELAAQVE 92
Query: 115 AATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQ 174
+ YG Y+K +K+ + GG+ Q+ L R +I++ATPGRL+DHM I+ SHL+
Sbjct: 93 ESVRAYGKYLK-LKSTVMFGGVGINPQIDALRRGVDIVVATPGRLLDHMQQKTIDLSHLE 151
Query: 175 ILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVN 234
ILVLDEADRMLDMGFI+DI++++ P RQ +LFSAT + +A+N+ P +++V
Sbjct: 152 ILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLLFSATFSDEIKALADNLLDSPALIEVA 211
Query: 235 SIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGF 294
+++ Q I VD K +L +L++ Q +VFT TK A+ +A++L G
Sbjct: 212 RRNTTAESVAQKIHPVDRD-RKREMLTHLIKQHNWFQVLVFTRTKHGANRLAEQLTKDGI 270
Query: 295 LAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYV 354
A +HG+ Q+AR R L + +++LVATD+AARGID+ + HV N+DLP PEDYV
Sbjct: 271 SALAIHGNKSQSARTRALAEFKNNTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYV 330
Query: 355 HRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIR 407
HRIGRTGRAG G AVSLV E +K IE+ K+ +P EVI GFEP R
Sbjct: 331 HRIGRTGRAGATGEAVSLVCVDELQLLKDIEKLIKRSVPQEVIAGFEPDPNAR 383
>gi|383784621|ref|YP_005469191.1| DEAD/DEAH box helicase [Leptospirillum ferrooxidans C2-3]
gi|383083534|dbj|BAM07061.1| putative DEAD/DEAH box helicase domain protein [Leptospirillum
ferrooxidans C2-3]
Length = 437
Score = 323 bits (829), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 177/402 (44%), Positives = 250/402 (62%), Gaps = 22/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F ++GL E +++A+ + GY PT +Q AIPA +SGRDL+ +QTG+GKTA F LP +
Sbjct: 1 MSFSALGLSEEIVRAVTERGYLTPTPIQVAAIPAVLSGRDLMAGAQTGTGKTAGFTLPII 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ L++ N+K KE+ R P + L+LTPTRELA QV + Y
Sbjct: 61 --------------EILSRKNDK----KEKGRRVPV--KALILTPTRELAAQVEESVVEY 100
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G +MK + + I GG+ Q+Q L +IL+ATPGRL+DH+ ++ SH++ILVLDE
Sbjct: 101 GKHMK-LSSTVIFGGVSINPQIQKLRTGVDILVATPGRLLDHVQQRTLDLSHVEILVLDE 159
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P TRQ +LFSAT + +++ +I KDP+++++ K
Sbjct: 160 ADRMLDMGFIRDIRKIISLLPKTRQNLLFSATFSDEIKSLSSSILKDPILIEITPSGKPV 219
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ ++Q I VD K +L L++ Q +VFT TK A+ +A++LN G + +H
Sbjct: 220 EKVSQKIYLVDRD-KKRAVLSKLIKQHDWFQILVFTRTKHGANRLAEQLNKDGISSLAIH 278
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR L + G + +LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 279 GNKSQGARTHALAEFKTGTLHVLVATDIAARGIDISELPHVVNFDLPNVPEDYVHRIGRT 338
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
RAG G A+SLV E ++ IER K +P EV+ GFEP
Sbjct: 339 ARAGAEGEAISLVCIDEHKLLEGIERLIKISLPREVVPGFEP 380
>gi|291614807|ref|YP_003524964.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
ES-1]
gi|291584919|gb|ADE12577.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
ES-1]
Length = 466
Score = 323 bits (829), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 178/410 (43%), Positives = 254/410 (61%), Gaps = 8/410 (1%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+FKS+GL E + +A+ + GYT+PT +Q QAIP + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFKSLGLSEEIARAVSERGYTEPTPIQAQAIPVILKGGDLMGGAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKP--AQPRMLVLTPTRELALQVTAATE 118
+ P+ + Q++ ER + A R LVLTPTRELA QV +
Sbjct: 61 QRLMEK----PISGQPSPQSSPASGRGGEREKHSSIRAPIRALVLTPTRELAAQVEESVR 116
Query: 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
YG Y+ +K++ + GG+ Q++ L +IL+ATPGRL+DH+ ++ SH++ILVL
Sbjct: 117 LYGKYLP-LKSMMMFGGVNINPQIKQLHGRVDILVATPGRLLDHLQQKTVDLSHVEILVL 175
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI DI++++ P RQ +LFSAT + +A+ + +P +++V +
Sbjct: 176 DEADRMLDMGFIRDIKRVLAVLPKQRQNLLFSATFSDEIKLLADGLLNNPALIEVARRNQ 235
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + VD +N LL +L++D Q +VFT TK A+ +AD LN G A
Sbjct: 236 ANELIEQRVYPVDRERKRN-LLTHLIKDHNWFQVLVFTRTKHGANNLADHLNKEGIPAMA 294
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ Q AR R L + ++++LVATD+AARGID+ + HV NY+LP PEDYVHRIG
Sbjct: 295 IHGNKSQAARTRALAEFKTAKLQVLVATDIAARGIDISELPHVVNYELPNVPEDYVHRIG 354
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
RTGRAG G A SLV E+ + IER K++IP+ + GFEP RI+
Sbjct: 355 RTGRAGSEGEASSLVCIDEKKLLHDIERLIKREIPVVQVPGFEPDPRIKA 404
>gi|167844421|ref|ZP_02469929.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
B7210]
Length = 427
Score = 323 bits (829), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 247/402 (61%), Gaps = 23/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ ++GYT+PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + Y R R L+LTPTRELA QV + Y
Sbjct: 61 QRL------------------HAFYAENRSARRAV---RALILTPTRELAAQVEESVRAY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+K +++ + GG+ Q+ L R +I++ATPGRL+DHM I+ S L ILVLDE
Sbjct: 100 SKYVK-LRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + ++A+++ P +++V
Sbjct: 159 ADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTA 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q I VD K LL +L+R+ Q +VFT TK A+ +A++L G A +H
Sbjct: 219 ETIAQKIHPVDRD-RKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 278 GNKSQSARTRALSEFKSSTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG NG AVSLV E+ ++ IER K++IP +VI GFEP
Sbjct: 338 GRAGANGEAVSLVCVDEKQLLRDIERLIKREIPQQVIPGFEP 379
>gi|444372413|ref|ZP_21171888.1| DEAD/DEAH box helicase, partial [Burkholderia cenocepacia
K56-2Valvano]
gi|443593626|gb|ELT62346.1| DEAD/DEAH box helicase, partial [Burkholderia cenocepacia
K56-2Valvano]
Length = 416
Score = 323 bits (829), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 248/402 (61%), Gaps = 23/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+S+GL E ++KA+ ++GYT PT +Q+QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ ++T R R L+LTPTRELA QV + Y
Sbjct: 61 QR---------------------LHTFYAEHRGAKRAVRALILTPTRELAAQVEESVRAY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+K +++ + GG+ Q+ L R +I++ATPGRL+DHM I+ S L ILVLDE
Sbjct: 100 SKYLK-LRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + +A+++ P +++V
Sbjct: 159 ADRMLDMGFIHDIKRVLAKLPPQRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTA 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+++ Q I VD K LL +L+R+ Q +VFT TK A+ +A++L G A +H
Sbjct: 219 ESVAQKIHPVDRD-RKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 278 GNKSQSARTRALAEFKNSTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G AVSLV E+ ++ IER K++IP EVI GFEP
Sbjct: 338 GRAGATGEAVSLVCVDEKQLLRDIERLIKREIPQEVIAGFEP 379
>gi|170725067|ref|YP_001759093.1| DEAD/DEAH box helicase [Shewanella woodyi ATCC 51908]
gi|169810414|gb|ACA84998.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
51908]
Length = 494
Score = 323 bits (829), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 175/402 (43%), Positives = 241/402 (59%), Gaps = 26/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +LKA+ + GY P+ +Q QAIPA + G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MSFTSLGLSAPILKAVAQKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ K R Q R LVLTPTRELA QV + E Y
Sbjct: 61 ELLSRGK------------------------RAPAKQVRALVLTPTRELAAQVAESVETY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G + +++ I GG+ Q+ L + +IL+ATPGRL+D N G ++F L++LVLDE
Sbjct: 97 GKNLP-LRSAVIFGGVGIGPQISKLGKGVDILVATPGRLLDLYNQGAVSFKQLEVLVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI+KI+ P RQ ++FSAT + N+A+ + +P+ + V
Sbjct: 156 ADRMLDMGFIHDIKKILKILPAKRQNLMFSATFSDDIRNLAKGLVNNPVEISVTPRNATA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
K + Q I VD K L +L++ Q +VF+ TK A+ IA L SG AA +H
Sbjct: 216 KTVEQYIYPVDQ-KQKTAALIHLVKQNEWKQVLVFSRTKHGANRIAKNLEASGLTAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + L N + G +++LVATD+AARGID+ + +V N+DLP PEDYVHRIGRT
Sbjct: 275 GNKSQGARTKALANFKSGEVRVLVATDIAARGIDIDQLPNVVNFDLPNVPEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG NG AVSLV+ E ++ IER KQ IP + + GF P
Sbjct: 335 GRAGANGQAVSLVSGDESKLLRDIERLIKQNIPRKEVEGFVP 376
>gi|134296873|ref|YP_001120608.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
vietnamiensis G4]
gi|387903185|ref|YP_006333524.1| ATP-dependent RNA helicase RhlE [Burkholderia sp. KJ006]
gi|134140030|gb|ABO55773.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
G4]
gi|387578077|gb|AFJ86793.1| ATP-dependent RNA helicase RhlE [Burkholderia sp. KJ006]
Length = 486
Score = 323 bits (829), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 177/407 (43%), Positives = 249/407 (61%), Gaps = 23/407 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+S+GL E ++KA+ ++GYT PT +Q+QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + YT R R L+LTPTRELA QV + Y
Sbjct: 61 QRL------------------HTFYTEH---RGAKRAVRALILTPTRELAAQVEESVRAY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+K +++ + GG+ Q+ L R +I++ATPGRL+DHM I+ S L ILVLDE
Sbjct: 100 SKYVK-LRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + +A+++ P +++V
Sbjct: 159 ADRMLDMGFIHDIKRVLAKLPPRRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTA 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I VD K LL +L+R+ Q +VFT TK A+ +A++L G A +H
Sbjct: 219 ETVAQKIHPVDRD-RKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 278 GNKSQSARTRALAEFKNNTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIR 407
GRAG G AVSLV E+ ++ IER K++IP EVI GFEP ++
Sbjct: 338 GRAGATGEAVSLVCVDEKQLLRDIERLIKREIPQEVIAGFEPDPNVK 384
>gi|330501389|ref|YP_004378258.1| DEAD/DEAH box helicase [Pseudomonas mendocina NK-01]
gi|328915675|gb|AEB56506.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
mendocina NK-01]
Length = 632
Score = 323 bits (829), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 176/403 (43%), Positives = 253/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKTA F LP L
Sbjct: 1 MSFASLGLSEALVRAIESAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTAGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ P + Q R P QPR+LVLTPTRELA QV + +
Sbjct: 61 ERL------FPAGHPDREQ------------RHGPKQPRVLVLTPTRELAAQVH---DSF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+Y + +K +S I GG+ Q+Q L++ ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KIYARDLKFVSACIFGGVGMNPQVQALAKGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI+D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFIHDVKKVLARLPAQRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G AA
Sbjct: 220 TVERIEQRV-FRLAASHKRALLAHLITQGAWEQVLVFTRTKHGANRLAEYLDKHGLPAAA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + +++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKASKVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+IP + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIPDGDLMGFD 381
>gi|309779776|ref|ZP_07674531.1| ATP-dependent RNA helicase RhlE, partial [Ralstonia sp. 5_7_47FAA]
gi|308921353|gb|EFP66995.1| ATP-dependent RNA helicase RhlE [Ralstonia sp. 5_7_47FAA]
Length = 404
Score = 323 bits (829), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 176/406 (43%), Positives = 253/406 (62%), Gaps = 19/406 (4%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL + +++A+ ++GY +PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 12 MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILRGGDLLAGAQTGTGKTAGFTLPLL 71
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ ++++ NK+ T + +RF R LVLTPTRELA QV + Y
Sbjct: 72 HRLSAAQP-------------NKVQT-PQGMRFPI---RALVLTPTRELAAQVEESVRAY 114
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ +K++ + GG+ Q+ L R +I++ATPGRL+DH+ I+ SH+++LVLDE
Sbjct: 115 GKYLP-LKSMVMFGGVGINPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDE 173
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI KI++ P RQ +LFSAT + +A+ + P +++V
Sbjct: 174 ADRMLDMGFIHDIRKILNILPAKRQNLLFSATFSDDIRELADRLLDKPALIEVARRNTTA 233
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I VD K LL L+RD Q +VFT TK A+ +A++L G A +H
Sbjct: 234 ETVEQRIYPVDR-ERKRELLAKLVRDNDWHQVLVFTRTKHGANRLAEQLTRDGIPALAIH 292
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + G +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 293 GNKSQSARTRALTEFKAGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 352
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
GRAG G A+SLV E ++ IER K+++P V+ FEP I
Sbjct: 353 GRAGAQGEAISLVCVDEHGLLRDIERLIKRELPRTVLERFEPDPTI 398
>gi|254251488|ref|ZP_04944806.1| Superfamily I DNA and RNA helicase [Burkholderia dolosa AUO158]
gi|124894097|gb|EAY67977.1| Superfamily I DNA and RNA helicase [Burkholderia dolosa AUO158]
Length = 480
Score = 323 bits (829), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 247/402 (61%), Gaps = 23/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+S+GL E ++KA+ ++GYT PT +Q+QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 4 MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 63
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ ++T R R L+LTPTRELA QV + Y
Sbjct: 64 QR---------------------LHTFYAEHRNAKRAVRALILTPTRELAAQVEESVRAY 102
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+K +++ + GG+ Q+ L R +I++ATPGRL+DHM I+ S L ILVLDE
Sbjct: 103 SKYLK-LRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSSLDILVLDE 161
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + +A+++ P +++V
Sbjct: 162 ADRMLDMGFIHDIKRVLAKLPPRRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTA 221
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I VD K LL +L+R+ Q +VFT TK A+ +A++L G A +H
Sbjct: 222 ETVAQKIHPVDRD-RKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIH 280
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 281 GNKSQSARTRALTEFKNSTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 340
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G AVSLV E+ ++ IER K++IP EVI GFEP
Sbjct: 341 GRAGATGEAVSLVCVDEKQLLRDIERLIKREIPQEVIAGFEP 382
>gi|421477647|ref|ZP_15925459.1| DEAD/DEAH box helicase, partial [Burkholderia multivorans CF2]
gi|400226180|gb|EJO56273.1| DEAD/DEAH box helicase, partial [Burkholderia multivorans CF2]
Length = 414
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 177/402 (44%), Positives = 247/402 (61%), Gaps = 23/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+S+GL E ++KA+ ++GYT PT +Q+QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + YT R R L+LTPTRELA QV + Y
Sbjct: 61 QRL------------------HTFYTEH---RSAKRAVRALILTPTRELAAQVEESVRAY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+K +++ + GG+ Q+ L R +I++ATPGRL+DHM I+ S L ILVLDE
Sbjct: 100 SKYLK-LRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + +A+++ P +++V
Sbjct: 159 ADRMLDMGFIHDIKRVLAKLPPRRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTA 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I VD K LL +L+R+ Q +VFT TK A+ +A++L G A +H
Sbjct: 219 ETVAQKIHPVDRD-RKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 278 GNKSQSARTRALAEFKNNTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G AVSLV E+ ++ IER K++IP EVI GFEP
Sbjct: 338 GRAGATGEAVSLVCVDEKQLLRDIERLIKREIPREVIAGFEP 379
>gi|420249963|ref|ZP_14753195.1| DNA/RNA helicase, superfamily II [Burkholderia sp. BT03]
gi|398063077|gb|EJL54833.1| DNA/RNA helicase, superfamily II [Burkholderia sp. BT03]
Length = 513
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 179/413 (43%), Positives = 248/413 (60%), Gaps = 36/413 (8%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ ++GYT PT +Q+QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSEQLVRAVNELGYTSPTPIQQQAIPAVLKGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP------RMLVLTPTRELALQVT 114
+RL P P R L+LTPTRELA QV
Sbjct: 61 ----------------------------QRLLTMPPAPGGKRVVRALILTPTRELAAQVE 92
Query: 115 AATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQ 174
+ YG Y+K +K+ + GG+ Q+ L R +I++ATPGRL+DHM I+ SHL+
Sbjct: 93 ESVRAYGKYLK-LKSTVMFGGVGINPQIDALRRGVDIVVATPGRLLDHMQQKTIDLSHLE 151
Query: 175 ILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVN 234
ILVLDEADRMLDMGFI+DI++++ P RQ +LFSAT + +A+N+ P +++V
Sbjct: 152 ILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLLFSATFSDEIKALADNLLDSPALIEVA 211
Query: 235 SIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGF 294
+++ Q I VD K +L +L++ Q +VFT TK A+ +A++L G
Sbjct: 212 RRNTTAESVAQKIHPVDRD-RKREMLTHLIKQHNWFQVLVFTRTKHGANRLAEQLTKDGI 270
Query: 295 LAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYV 354
A +HG+ Q+AR R L + +++LVATD+AARGID+ + HV N+DLP PEDYV
Sbjct: 271 SALAIHGNKSQSARTRALAEFKNNTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYV 330
Query: 355 HRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIR 407
HRIGRTGRAG G AVSLV E +K IE+ K+ +P EVI GFEP R
Sbjct: 331 HRIGRTGRAGATGEAVSLVCVDELQLLKDIEKLIKRSVPQEVIAGFEPDPNAR 383
>gi|161523807|ref|YP_001578819.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC 17616]
gi|189351431|ref|YP_001947059.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
gi|160341236|gb|ABX14322.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
ATCC 17616]
gi|189335453|dbj|BAG44523.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
Length = 480
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 178/403 (44%), Positives = 249/403 (61%), Gaps = 25/403 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+S+GL E ++KA+ ++GYT PT +Q+QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYT-HKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
+ + YT H+ R R L+LTPTRELA QV +
Sbjct: 61 QRL------------------HTFYTEHRSAKRAV----RALILTPTRELAAQVEESVRA 98
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y Y+K +++ + GG+ Q+ L R +I++ATPGRL+DHM I+ S L ILVLD
Sbjct: 99 YSKYLK-LRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DI++++ P RQ +LFSAT + +A+++ P +++V
Sbjct: 158 EADRMLDMGFIHDIKRVLAKLPPRRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTT 217
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+ + Q I VD K LL +L+R+ Q +VFT TK A+ +A++L G A +
Sbjct: 218 AETVAQKIHPVDRD-RKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAI 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HG+ Q+AR R L + +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGR
Sbjct: 277 HGNKSQSARTRALAEFKNNTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
TGRAG G AVSLV E+ ++ IER K++IP EVI GFEP
Sbjct: 337 TGRAGATGEAVSLVCVDEKQLLRDIERLIKREIPREVIAGFEP 379
>gi|399020612|ref|ZP_10722739.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. CF444]
gi|398094379|gb|EJL84742.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. CF444]
Length = 466
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 175/408 (42%), Positives = 249/408 (61%), Gaps = 25/408 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ + GYT PT +Q QA+PA ++G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFSSLGLSEEIVRAVTEQGYTTPTPIQTQAVPAVLAGGDLLAGAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP-RMLVLTPTRELALQVTAATER 119
+ +S ER++ P R L+LTPTRELA QV +
Sbjct: 61 QRLSSV----------------------ERVKINGHVPIRALILTPTRELAAQVEESVRL 98
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
YG Y+ + + I GG+ Q++ L + +IL+ATPGRL+DHM ++ ++Q+L+LD
Sbjct: 99 YGKYLP-LTSACIFGGVGINPQIRQLKQGVDILVATPGRLLDHMQQNTVDLRNIQVLILD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI DI+KI+ P RQ +LFSAT + +A+ + P +++V
Sbjct: 158 EADRMLDMGFIRDIKKILAILPKKRQNLLFSATFSDEIKALADGLLNSPAMIEVARRNST 217
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+ I Q I VD K+ +L +L+ + Q +VFT TK A+ + ++L G A +
Sbjct: 218 VEVIGQKIHPVDRD-KKHPMLAHLINTHKWTQVLVFTRTKHGANKLVEQLERDGITAMAI 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HG+ Q AR R L + G+++ L+ATD+AARGID+ + HV NYDLP PEDYVHRIGR
Sbjct: 277 HGNKSQAARTRALAEFKDGKLQALIATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIR 407
TGRAG G AVSLV ER + IERF K++IP+E+I GFEP + +
Sbjct: 337 TGRAGATGSAVSLVCVDERDMLHDIERFIKREIPVEIIPGFEPDPKAK 384
>gi|386284070|ref|ZP_10061293.1| ATP-dependent RNA helicase [Sulfurovum sp. AR]
gi|385344973|gb|EIF51686.1| ATP-dependent RNA helicase [Sulfurovum sp. AR]
Length = 429
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 178/407 (43%), Positives = 249/407 (61%), Gaps = 25/407 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F ++GL E +LKA+ + GY PT +Q+QAIP I G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MSFTNLGLSEPLLKAIKEQGYDTPTPIQQQAIPVVIEGKDVLAAAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
K + ++ K+ HK+++R LVLTPTRELA QV + + Y
Sbjct: 61 EKLSKTQPKM----------------HKKQIR-------ALVLTPTRELAAQVAESIKTY 97
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ + I GG+ Q+ + + EI++ATPGRL+D I+FS L+ L+LDE
Sbjct: 98 GKHLPYTSTV-IFGGVGINPQLAAIRKGVEIVIATPGRLLDIAGQKGIDFSALECLILDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI+K++ P RQT+LFSAT + +AE + DP++++V +
Sbjct: 157 ADRMLDMGFIHDIKKLMKLMPQKRQTLLFSATFSADIKALAEGLLNDPILVEVARQNETA 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
I Q I FVD K LL L++ K+ Q +VFT TK A+ + L SG AA +H
Sbjct: 217 DQINQVIHFVDK-RRKRELLSQLIKVKKWKQVLVFTRTKHGANKLTKELEESGISAAAIH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + L + I++LVATD+AARGID+ + HV NY+LP PEDYVHRIGRT
Sbjct: 276 GNKSQGARTKALAAFKANGIRVLVATDIAARGIDIDQLPHVVNYELPNVPEDYVHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIR 407
GRAG++G AVSLV E +K IE+F K +IP I F P I+
Sbjct: 336 GRAGKSGEAVSLVCIDEHELLKNIEKFIKLEIPKVDIPAFRPDPNIK 382
>gi|221211314|ref|ZP_03584293.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD1]
gi|221168675|gb|EEE01143.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD1]
Length = 480
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 178/403 (44%), Positives = 249/403 (61%), Gaps = 25/403 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+S+GL E ++KA+ ++GYT PT +Q+QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYT-HKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
+ + YT H+ R R L+LTPTRELA QV +
Sbjct: 61 QRL------------------HTFYTEHRSAKRAV----RALILTPTRELAAQVEESVRA 98
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y Y+K +++ + GG+ Q+ L R +I++ATPGRL+DHM I+ S L ILVLD
Sbjct: 99 YSKYLK-LRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DI++++ P RQ +LFSAT + +A+++ P +++V
Sbjct: 158 EADRMLDMGFIHDIKRVLAKLPPRRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTT 217
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+ + Q I VD K LL +L+R+ Q +VFT TK A+ +A++L G A +
Sbjct: 218 AETVAQKIHPVDRD-RKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAI 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HG+ Q+AR R L + +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGR
Sbjct: 277 HGNKSQSARTRALAEFKNNTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
TGRAG G AVSLV E+ ++ IER K++IP EVI GFEP
Sbjct: 337 TGRAGATGEAVSLVCVDEKQLLRDIERLIKREIPREVIAGFEP 379
>gi|91787583|ref|YP_548535.1| DEAD/DEAH box helicase [Polaromonas sp. JS666]
gi|91696808|gb|ABE43637.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
Length = 624
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 181/441 (41%), Positives = 257/441 (58%), Gaps = 27/441 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISG------------RDLIVSSQTGS 49
F +GL + +L+A+ +G+T+PT VQ IP A+ G DL+VSSQTGS
Sbjct: 48 GFVKLGLAKELLQAVADMGFTQPTAVQLATIPKAMQGLDADGADPKAKFTDLLVSSQTGS 107
Query: 50 GKTAAFMLPALHKFASSK--------------NKIPVMKKNLNQNNNKIYTHKERLRFKP 95
GKTAAF+LP LH + + + K K FK
Sbjct: 108 GKTAAFLLPVLHTLLMQQEEAERQERAEFERLSAEAIAKGEAPPKKPKRKDPTNARNFKA 167
Query: 96 AQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLAT 155
A P L+L PTRELA QV A + + ++ +++GG+PY Q+ L +N +++AT
Sbjct: 168 ATPGALILCPTRELAQQVCADAIDLVRHCRGLRIANVVGGIPYQLQIAKL-QNANLVVAT 226
Query: 156 PGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDG 215
PGRL+D S +I +Q LV+DEADRMLD+GF +D+ ++ T +QTM+FSAT
Sbjct: 227 PGRLLDLQRSMQIKLDQVQFLVVDEADRMLDLGFADDLTEVNQLTIERKQTMMFSATFAP 286
Query: 216 IVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVF 275
+ +A + + P ++++S +K +ITQS+L+ D++ HK +LLD+ LRD + Q++VF
Sbjct: 287 RIMQLATRVMRTPQRVEIDSPHEKHTSITQSLLWADNMTHKRKLLDHHLRDTTMNQSIVF 346
Query: 276 TATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDV 335
T+ + D +A+ L GF A LHG L Q RNR L R GR+++LVATDVAARG+DV
Sbjct: 347 ACTQVECDGLANDLVQEGFSAVALHGALGQGLRNRRLMAFRDGRVQVLVATDVAARGLDV 406
Query: 336 PAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIE 395
P ITHV NY LP EDYVHRIGRTGRAGR G A+++ +R I+ IE + +Q +
Sbjct: 407 PTITHVINYGLPMKAEDYVHRIGRTGRAGREGQAITIAEFRDRRKIQDIEHYMQQNLKPS 466
Query: 396 VINGFEPKKRIRTYYSRYRFN 416
VI G EP++R R R N
Sbjct: 467 VIAGLEPQQRFAPTSERPRGN 487
>gi|56460652|ref|YP_155933.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
gi|56179662|gb|AAV82384.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
Length = 416
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 173/407 (42%), Positives = 246/407 (60%), Gaps = 28/407 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F+S+GL + +L+A+ + GYT PT +Q+QAIP ++G DL+ ++QTG+GKTA F LP LH
Sbjct: 9 SFQSLGLSDDILRAVTECGYTTPTPIQQQAIPTVMAGHDLLAAAQTGTGKTAGFTLPLLH 68
Query: 62 KFASSK-NKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
K + +K + PV+K L+LTPTRELA QV Y
Sbjct: 69 KLSQTKTDGKPVIK-------------------------ALILTPTRELAAQVEDNLNTY 103
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y +K++ I GG+ Q+ L R +IL+ATPGRL+DH G ++ S + +L+LDE
Sbjct: 104 AKYTG-LKSLVIFGGVGINPQISALRRGVDILVATPGRLLDHSRQGTVDLSKIDVLILDE 162
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI+K++ P RQT+LFSAT + +++ + P +++V
Sbjct: 163 ADRMLDMGFIHDIKKVMKLIPEKRQTLLFSATFSSEIKALSQQFMQQPKLIEVARQNAAA 222
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
I Q + VD K LL YL+ + Q +VFT TK A+ +A +L G A +H
Sbjct: 223 DTIEQRVYPVDK-KRKRELLSYLIGSRNWRQVLVFTRTKHGANRLATQLTDDGLPAMAIH 281
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + L + G++++LVATD+AARGID+ + HV N++LP+ EDYVHRIGRT
Sbjct: 282 GNKSQGARTKALAQFKAGKLRVLVATDIAARGIDIDELPHVINFELPQVAEDYVHRIGRT 341
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIR 407
GRAG G A SLV E ++ IE+ TK +IP EVI GFEP I+
Sbjct: 342 GRAGSEGEAASLVCVDEHKLLRDIEKLTKNEIPREVIPGFEPDPSIK 388
>gi|221200134|ref|ZP_03573177.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD2M]
gi|221206713|ref|ZP_03579725.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD2]
gi|221173368|gb|EEE05803.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD2]
gi|221180373|gb|EEE12777.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD2M]
Length = 480
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 178/403 (44%), Positives = 249/403 (61%), Gaps = 25/403 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+S+GL E ++KA+ ++GYT PT +Q+QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYT-HKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
+ + YT H+ R R L+LTPTRELA QV +
Sbjct: 61 QRL------------------HTFYTEHRSAKRAV----RALILTPTRELAAQVEESVRA 98
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y Y+K +++ + GG+ Q+ L R +I++ATPGRL+DHM I+ S L ILVLD
Sbjct: 99 YSKYLK-LRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLD 157
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DI++++ P RQ +LFSAT + +A+++ P +++V
Sbjct: 158 EADRMLDMGFIHDIKRVLAKLPPRRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTT 217
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+ + Q I VD K LL +L+R+ Q +VFT TK A+ +A++L G A +
Sbjct: 218 AETVAQKIHPVDRD-RKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAI 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HG+ Q+AR R L + +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGR
Sbjct: 277 HGNKSQSARTRALAEFKNNTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
TGRAG G AVSLV E+ ++ IER K++IP EVI GFEP
Sbjct: 337 TGRAGATGEAVSLVCVDEKQLLRDIERLIKREIPREVIAGFEP 379
>gi|428310822|ref|YP_007121799.1| DNA/RNA helicase [Microcoleus sp. PCC 7113]
gi|428252434|gb|AFZ18393.1| DNA/RNA helicase, superfamily II [Microcoleus sp. PCC 7113]
Length = 433
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 172/405 (42%), Positives = 247/405 (60%), Gaps = 25/405 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+++GL +L+A+ GYT+PT +Q+QAIPA + G+D+ S+QTG+GKTA F LP L
Sbjct: 1 MTFRNLGLSTDLLRAVADSGYTEPTPIQQQAIPAVLQGKDVFASAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
++ N NK++ PR L+LTPTRELA QV + + Y
Sbjct: 61 QLLNTT-------------NPNKVHR----------TPRALILTPTRELADQVNDSVKTY 97
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ +++ + GG+ Q+Q L R +IL+ATPGRL+DH+ ++ S ++ILVLDE
Sbjct: 98 GKYLS-LRSAVVYGGVGIKAQIQTLRRGVDILVATPGRLLDHVGQKTVDLSQVEILVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
DRMLDMGFI DI KI+ P +RQT++FSAT + +A + K P ++V
Sbjct: 157 CDRMLDMGFIRDIRKILAILPSSRQTLMFSATFSKPIQQLANTLLKSPTQIEVAPRNTAA 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q + VD K LL Y++ Q +VFT TK A+ +A++L G + +H
Sbjct: 217 QQVEQVVHPVDRD-RKRELLSYMIGFHNWKQVLVFTRTKHGANRLAEQLAKDGLKSTAIH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L++ ++G++++LVATDVA+RG+D+ + HV NY+LP PEDYVHRIGRT
Sbjct: 276 GNKSQAARTRALQDFKQGKVRVLVATDVASRGLDIDQLPHVVNYELPNVPEDYVHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
GRAG G AVSLV E +K IER Q + EVI G+EP +
Sbjct: 336 GRAGNEGRAVSLVCGDEYPFLKDIERLLNQTLAKEVIPGYEPTSK 380
>gi|302879666|ref|YP_003848230.1| DEAD/DEAH box helicase [Gallionella capsiferriformans ES-2]
gi|302582455|gb|ADL56466.1| DEAD/DEAH box helicase domain protein [Gallionella
capsiferriformans ES-2]
Length = 504
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 179/437 (40%), Positives = 256/437 (58%), Gaps = 28/437 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F S+ L E +++A+ GYT+PT VQ QAIP ++G DL+ +QTG+GKTA F LP L
Sbjct: 10 VTFASLNLAEPIMRAIADAGYTQPTPVQAQAIPLVLAGGDLLAGAQTGTGKTAGFTLPVL 69
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H S P + PR L+LTPTRELA QV + + Y
Sbjct: 70 HLLNSRPAANPGAGR----------------------PRCLILTPTRELAAQVEESVQTY 107
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ +K++ + GG+ Q++ L +IL+ATPGRL+DH+ ++ S ++IL+LDE
Sbjct: 108 GKYLS-LKSLVMFGGVNINPQIKSLRGQVDILVATPGRLLDHVGQKTLDLSAVEILILDE 166
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI+KI+ P TRQ +LFSAT + +++ + +P ++V
Sbjct: 167 ADRMLDMGFIRDIKKILALLPKTRQNLLFSATFSEEIKTLSDGLLNNPGFVEVARRNTTS 226
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q++ V L K+ LL +L++ Q +VFT TK A+ +A++LN G AA +H
Sbjct: 227 ELVAQTVHMVAQKL-KSHLLSHLIKHNDWKQVLVFTRTKHGANRLAEKLNADGIPAAAIH 285
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR + L + G + +LVATD+AARG+D+ + HV N++LP PEDYVHRIGRT
Sbjct: 286 GNKSQSARTKALSQFKDGTMPVLVATDIAARGLDIDMLPHVVNFELPNVPEDYVHRIGRT 345
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRYRFNNNNW 420
GRAG NG A+SLV+ E ++K IER K QIP I+ F P I R +
Sbjct: 346 GRAGSNGAAISLVDSEELQHLKDIERLIKTQIPRIAIDSFVPPTHIPPEAPRPPRPQHGQ 405
Query: 421 KTHNINKSNITKRFYRQ 437
K H SN T R R+
Sbjct: 406 KRH----SNTTARPPRE 418
>gi|307730917|ref|YP_003908141.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1003]
gi|307585452|gb|ADN58850.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
Length = 517
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 178/402 (44%), Positives = 248/402 (61%), Gaps = 22/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ ++GYT PT +Q QAIPA ++G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ S PV + + R L+LTPTRELA QV + Y
Sbjct: 61 QRLHSMP---PVAAASGKRAV-----------------RALILTPTRELAAQVEESVRAY 100
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+K +K+ + GG+ Q+ L +I++ATPGRL+DHM I+ SHL+ILVLDE
Sbjct: 101 GKYLK-LKSTVMFGGVGINPQIGALKSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDE 159
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + +A+N+ P +++V
Sbjct: 160 ADRMLDMGFIHDIKRVLAKLPPKRQNLLFSATFSDEIKALADNLLDSPALIEVARRNTTA 219
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I VD K LL +L++ Q +VFT TK A+ +A++L+ G A +H
Sbjct: 220 ETVAQKIHPVDRD-KKRELLTHLIKQHNWFQVLVFTRTKHGANRLAEQLSKDGISALAIH 278
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + G +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 279 GNKSQSARTRALAEFKDGTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 338
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G AVSLV E +K IE+ K+ +P EVI GFEP
Sbjct: 339 GRAGATGEAVSLVCVDELQLLKDIEKLIKRPVPQEVIPGFEP 380
>gi|167585532|ref|ZP_02377920.1| DEAD/DEAH box helicase domain protein [Burkholderia ubonensis Bu]
Length = 408
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 248/402 (61%), Gaps = 23/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+S+GL E ++KA+ ++GYT PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFESLGLAEPLVKAVNELGYTSPTPIQSQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + + + H +R R L+LTPTRELA QV + Y
Sbjct: 61 QRLHTFYAE---------------HHHAKR------AVRALILTPTRELAAQVEESVRAY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+K +++ + GG+ Q+ L R +I++ATPGRL+DHM I+ S L ILVLDE
Sbjct: 100 SKYLK-LRSTVMFGGVSINPQIDALRRGVDIVVATPGRLLDHMQQKTIDLSQLDILVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + +A+++ P +++V
Sbjct: 159 ADRMLDMGFIHDIKRVLAKLPPRRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTA 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I VD K LL +L+R+ Q +VFT TK A+ +A++L G A +H
Sbjct: 219 ETVAQKIHPVDRD-RKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 278 GNKSQSARTRALAEFKNSTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G AVSLV E+ ++ IER K++IP EVI GFEP
Sbjct: 338 GRAGATGEAVSLVCVDEKQLLRDIERLIKREIPQEVIPGFEP 379
>gi|187925284|ref|YP_001896926.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN]
gi|187716478|gb|ACD17702.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
PsJN]
Length = 515
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 246/402 (61%), Gaps = 22/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ ++GYT PT +Q QAIPA ++G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N +P + + R L+LTPTRELA QV + Y
Sbjct: 61 QRL----NTMPAVTTGSGKRAV----------------RALILTPTRELAAQVEESVRAY 100
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+K +K+ + GG+ Q+ L +I++ATPGRL+DHM I+ SHL+ILVLDE
Sbjct: 101 GKYLK-LKSTVMFGGVGINPQIGALRSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDE 159
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + +A+N+ P +++V
Sbjct: 160 ADRMLDMGFIHDIKRVLAKLPPKRQNLLFSATFSDEIKTLADNLLDSPALIEVARRNTTA 219
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I VD K LL +L++ Q +VFT TK A+ +A++L A +H
Sbjct: 220 ETVAQKIHPVDRD-KKRELLTHLIKQHNWFQVLVFTRTKHGANRLAEQLTKDSISALAIH 278
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + G +++LVATD+AARGID+ + HV NYDLP PEDYVHRIGRT
Sbjct: 279 GNKSQSARTRALAEFKDGTLQVLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRT 338
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G A+SLV E +K IE+ K+ +P EVI GFEP
Sbjct: 339 GRAGATGEAISLVCVDELQLLKDIEKLIKRPVPQEVIAGFEP 380
>gi|224826248|ref|ZP_03699350.1| DEAD/DEAH box helicase domain protein [Pseudogulbenkiania
ferrooxidans 2002]
gi|224601349|gb|EEG07530.1| DEAD/DEAH box helicase domain protein [Pseudogulbenkiania
ferrooxidans 2002]
Length = 456
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 175/405 (43%), Positives = 243/405 (60%), Gaps = 28/405 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL +L+A+ + GY++PT +Q +AIP +SGRDL+ ++QTG+GKTAAFMLP L
Sbjct: 1 MSFAELGLSPEILRAIDEQGYSEPTPIQAKAIPLVLSGRDLLAAAQTGTGKTAAFMLPIL 60
Query: 61 H---KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAAT 117
KFAS+ P M R L+L+PTRELA Q+
Sbjct: 61 ERLKKFASTSAS-PAMHPV----------------------RALILSPTRELADQIAVNA 97
Query: 118 ERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
Y Y+ +++ + GGM Q Q L R EIL+ATPGRL+DH+ + + + +LV
Sbjct: 98 AAYTKYLP-LRSTVVFGGMNMDPQTQELRRGVEILIATPGRLLDHVGQKTVQLNKVDVLV 156
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
LDEADRMLDMGFINDI KI+ P TRQT+LFSAT + +AE DP ++V
Sbjct: 157 LDEADRMLDMGFINDIRKILGMLPRTRQTLLFSATFAPEIKRLAEEFMHDPQTVEVARQN 216
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+ Q + VD K LL +L+R++++GQ +VF TK AD +A L G A
Sbjct: 217 STNAQVEQLVFSVDS-QRKRYLLSHLIRERQMGQVIVFCKTKLSADQLARDLKRDGHAAE 275
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
+HGD Q AR TL + G +K+LVATDVAARG+D+ + +V N++LP PEDYVHRI
Sbjct: 276 AIHGDKAQGARLETLTAFKNGEVKVLVATDVAARGLDISELPYVVNFELPNAPEDYVHRI 335
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRTGRAG +G A+SL+ E ++ IE+ T+Q + + ++GF P
Sbjct: 336 GRTGRAGASGVAISLMGQDEGKQLEAIEKLTRQTLKPQPVSGFWP 380
>gi|334131082|ref|ZP_08504848.1| ATP-dependent RNA helicase [Methyloversatilis universalis FAM5]
gi|333443712|gb|EGK71673.1| ATP-dependent RNA helicase [Methyloversatilis universalis FAM5]
Length = 535
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 168/402 (41%), Positives = 244/402 (60%), Gaps = 25/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
++F +GL E +L+A+ + GYT PT +Q++AIP I+GRDL+ ++QTG+GKTA F LP L
Sbjct: 5 VDFAGLGLAEPLLRAISEEGYTHPTPIQQKAIPLVIAGRDLLAAAQTGTGKTAGFTLPIL 64
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H + IP +PR+LVLTPTRELA QV + Y
Sbjct: 65 HTLLNRPASIPA-----------------------GRPRVLVLTPTRELAAQVEESVRTY 101
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G + K ++++ + GG+ Q+Q L + +IL+ATPGRL+DH+ ++ S ++I VLDE
Sbjct: 102 GRHAK-MRSMVMFGGVGMNPQLQALKQRVDILVATPGRLLDHVGEKSLDLSGVEIFVLDE 160
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI K++ P RQT+L+SAT + +A + DP ++V
Sbjct: 161 ADRMLDMGFIRDIRKVIAVLPKVRQTLLYSATFSPEIRELAHGLLNDPAEVEVAPRNTTA 220
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q + V+ K LL +L+ Q +VFT TK A+ +A++L+ G AA +H
Sbjct: 221 ERVAQEVYMVEQ-KQKRHLLAHLINQGAWSQVLVFTRTKHGANRLAEQLDKQGITAAAIH 279
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ QNAR R L + + +++LVATD+AARG+D+ + HV N++LP PEDYVHRIGRT
Sbjct: 280 GNKSQNARTRALADFKSNTLRVLVATDIAARGLDIDQLPHVVNFELPNVPEDYVHRIGRT 339
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG +G A+SLV+ E + IE+ T+Q IP GF P
Sbjct: 340 GRAGASGAAISLVDREEAKLLTAIEKVTRQSIPRATAEGFVP 381
>gi|226942516|ref|YP_002797589.1| DEAD/DEAH box helicase [Azotobacter vinelandii DJ]
gi|226717443|gb|ACO76614.1| ATP-dependent RNA helicase, DEAD box family [Azotobacter vinelandii
DJ]
Length = 557
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 178/403 (44%), Positives = 248/403 (61%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GY +PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAVEAAGYAQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + KE R P Q R+LVLTPTRELA QV + +
Sbjct: 61 ERLFPGG-----------------HPDKEH-RHGPRQARVLVLTPTRELAAQVH---DSF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q LSR ++L+A PGRL+D + G ++ SH++ILVL
Sbjct: 100 KLYARDLKLVSACIFGGVGMNPQVQALSRGVDVLVACPGRLLDLVGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI+D++K++ P RQ +LFSAT + N+ + DP ++V
Sbjct: 160 DEADRMLDMGFIHDVKKVLAKLPPKRQNLLFSATFSADIVNLTNKLLHDPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G AA
Sbjct: 220 TVERIEQRV-FRLPAGHKRALLAHLVTQGAWEQVLVFTRTKHGANRLAEYLDKHGLPAAA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G I+ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKSGTIRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER T+Q IP GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTRQSIPEGDWAGFD 381
>gi|347541119|ref|YP_004848545.1| ATP-dependent RNA helicase RhlE [Pseudogulbenkiania sp. NH8B]
gi|345644298|dbj|BAK78131.1| ATP-dependent RNA helicase RhlE [Pseudogulbenkiania sp. NH8B]
Length = 455
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 175/405 (43%), Positives = 243/405 (60%), Gaps = 28/405 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL +L+A+ + GY++PT +Q +AIP +SGRDL+ ++QTG+GKTAAFMLP L
Sbjct: 1 MSFAELGLSPEILRAIDEQGYSEPTPIQAKAIPLVLSGRDLLAAAQTGTGKTAAFMLPIL 60
Query: 61 H---KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAAT 117
KFAS+ P M R L+L+PTRELA Q+
Sbjct: 61 ERLKKFASTSAS-PAMHPV----------------------RALILSPTRELADQIAVNA 97
Query: 118 ERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
Y Y+ +++ + GGM Q Q L R EIL+ATPGRL+DH+ + + + +LV
Sbjct: 98 AAYTKYLP-LRSTVVFGGMNMDPQTQELRRGVEILIATPGRLLDHVGQKTVQLNKVDVLV 156
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
LDEADRMLDMGFINDI KI+ P TRQT+LFSAT + +AE DP ++V
Sbjct: 157 LDEADRMLDMGFINDIRKILGMLPRTRQTLLFSATFAPEIKRLAEEFMHDPQTVEVARQN 216
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+ Q + VD K LL +L+R++++GQ +VF TK AD +A L G A
Sbjct: 217 STNAQVEQLVFSVDS-QRKRYLLSHLIRERQMGQVIVFCKTKLSADQLARDLKRDGHAAE 275
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
+HGD Q AR TL + G +K+LVATDVAARG+D+ + +V N++LP PEDYVHRI
Sbjct: 276 AIHGDKAQGARLETLTAFKNGEVKVLVATDVAARGLDISELPYVVNFELPNAPEDYVHRI 335
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRTGRAG +G A+SL+ E ++ IE+ T+Q + + ++GF P
Sbjct: 336 GRTGRAGASGVAISLMGQDEGKQLEAIEKLTRQTLKPQPVSGFWP 380
>gi|222110403|ref|YP_002552667.1| dead/deah box helicase domain-containing protein [Acidovorax ebreus
TPSY]
gi|221729847|gb|ACM32667.1| DEAD/DEAH box helicase domain protein [Acidovorax ebreus TPSY]
Length = 578
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 175/404 (43%), Positives = 252/404 (62%), Gaps = 22/404 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+ + L +L+A+ + GY PT +Q QAIPA ++G DL+ +QTG+GKTAAF LP L
Sbjct: 1 MTFEELKLAPAILRAVQEQGYDNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ A + R +F R LVLTPTRELA QV + Y
Sbjct: 61 HRLAEGQ--------------------APRSQFGGKGVRALVLTPTRELAAQVEESVRGY 100
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ + + I GG+ Q++ + R ++L+ATPGRL+D G ++ S ++ILVLDE
Sbjct: 101 GKYLD-LNSTVIFGGVGMNPQIERIKRGVDVLVATPGRLLDLQQQGFMDLSTVEILVLDE 159
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+D++K++ P ++Q++LFSAT + +A ++ K+P ++V
Sbjct: 160 ADRMLDMGFIHDVKKVLALLPQSKQSLLFSATFSDDIRELANSLLKNPQSIQVTPRNTTV 219
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I+Q I V K LL +++++ Q +VFT TK A+ +A+ L +G A LH
Sbjct: 220 QRISQVIHPVGRGKKKQVLL-HIIQEHDWSQVLVFTRTKFGANNVAEYLTKNGVSAMALH 278
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR + LE + G+I+ LVATD+AARGID+ + HV NY++P PEDYVHRIGRT
Sbjct: 279 GNKSQSARTQALEGFKTGQIRALVATDIAARGIDIDDLPHVVNYEIPNVPEDYVHRIGRT 338
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRAGR G AVSLV E + +IERFTKQ+IP++VI+GF P +
Sbjct: 339 GRAGREGHAVSLVCMDEEGFMMEIERFTKQEIPVQVIDGFGPDE 382
>gi|121594947|ref|YP_986843.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
JS42]
gi|120607027|gb|ABM42767.1| DEAD/DEAH box helicase domain protein [Acidovorax sp. JS42]
Length = 577
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 175/404 (43%), Positives = 252/404 (62%), Gaps = 22/404 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+ + L +L+A+ + GY PT +Q QAIPA ++G DL+ +QTG+GKTAAF LP L
Sbjct: 1 MTFEELKLAPAILRAVQEQGYDNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ A + R +F R LVLTPTRELA QV + Y
Sbjct: 61 HRLAEGQ--------------------APRSQFGGKGVRALVLTPTRELAAQVEESVRGY 100
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ + + I GG+ Q++ + R ++L+ATPGRL+D G ++ S ++ILVLDE
Sbjct: 101 GKYLD-LNSTVIFGGVGMNPQIERIKRGVDVLVATPGRLLDLQQQGFMDLSTVEILVLDE 159
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+D++K++ P ++Q++LFSAT + +A ++ K+P ++V
Sbjct: 160 ADRMLDMGFIHDVKKVLALLPQSKQSLLFSATFSDDIRELANSLLKNPQSIQVTPRNTTV 219
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I+Q I V K LL +++++ Q +VFT TK A+ +A+ L +G A LH
Sbjct: 220 QRISQVIHPVGRGKKKQVLL-HIIQEHDWSQVLVFTRTKFGANNVAEYLTKNGVSAMALH 278
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR + LE + G+I+ LVATD+AARGID+ + HV NY++P PEDYVHRIGRT
Sbjct: 279 GNKSQSARTQALEGFKTGQIRALVATDIAARGIDIDDLPHVVNYEIPNVPEDYVHRIGRT 338
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRAGR G AVSLV E + +IERFTKQ+IP++VI+GF P +
Sbjct: 339 GRAGREGHAVSLVCMDEEGFMMEIERFTKQEIPVQVIDGFGPDE 382
>gi|323527279|ref|YP_004229432.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
CCGE1001]
gi|323384281|gb|ADX56372.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
Length = 530
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 177/402 (44%), Positives = 247/402 (61%), Gaps = 22/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ ++GYT PT +Q QAIPA ++G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ S +P + + R L+LTPTRELA QV + Y
Sbjct: 61 QRLHS----MPPLAAASGKRAV----------------RALILTPTRELAAQVEESVRAY 100
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+K +K+ + GG+ Q+ L +I++ATPGRL+DHM I+ SHL+ILVLDE
Sbjct: 101 GKYLK-LKSTVMFGGVGINPQIGALKSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDE 159
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + +A+N+ P +++V
Sbjct: 160 ADRMLDMGFIHDIKRVLAKLPPKRQNLLFSATFSDEIKALADNLLDSPALIEVARRNTTA 219
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I VD K LL +L++ Q +VFT TK A+ +A++L G A +H
Sbjct: 220 ETVAQKIHPVDRD-KKRELLTHLIKQHNWFQVLVFTRTKHGANRLAEQLTKDGISALAIH 278
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + G +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 279 GNKSQSARTRALAEFKDGTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 338
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G AVSLV E +K IE+ K+ +P EVI GFEP
Sbjct: 339 GRAGATGEAVSLVCVDELQLLKDIEKLIKRPVPQEVIPGFEP 380
>gi|427403555|ref|ZP_18894437.1| hypothetical protein HMPREF9710_04033 [Massilia timonae CCUG 45783]
gi|425717538|gb|EKU80494.1| hypothetical protein HMPREF9710_04033 [Massilia timonae CCUG 45783]
Length = 451
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 243/402 (60%), Gaps = 19/402 (4%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL + +++A+ + GYT PT +Q QAIPA ++G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFSSLGLSDAIVRAVTEQGYTAPTPIQSQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ + N +R + P R LVLTPTRELA QV + Y
Sbjct: 61 HRLS-----------------NDAVGAAQRNKTAPRAIRALVLTPTRELAAQVEESVRLY 103
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y A+ I GG+ Q++LL +IL+ATPGRL+DH G ++ S ++IL+LDE
Sbjct: 104 GKYTNLNSAV-IFGGVGINPQIKLLKHGVDILVATPGRLLDHAGQGTVDLSKIEILILDE 162
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI K++ P RQ +LFSAT + +A+ + +P ++V
Sbjct: 163 ADRMLDMGFIHDIRKVLALLPPKRQNLLFSATFSDDIKALADRLLNNPQSIEVARRNSTV 222
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q I VD K+ +L +L++ Q +VFT TK A+ + ++L G A +H
Sbjct: 223 EVIAQKIHPVDRD-KKHPMLAHLIKSNNWHQVLVFTRTKHGANKLVEQLGKDGIGAMAIH 281
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR + L + G +++LVATD+AARGID+ + HV NYDLP PEDYVHRIGRT
Sbjct: 282 GNKSQSARTKALSEFKDGSLQVLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRT 341
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G AVSLV E +K IE+ KQ +P VI GFEP
Sbjct: 342 GRAGATGEAVSLVCVDEHQMLKDIEKLIKQTLPRAVIPGFEP 383
>gi|372489782|ref|YP_005029347.1| DNA/RNA helicase [Dechlorosoma suillum PS]
gi|359356335|gb|AEV27506.1| DNA/RNA helicase, superfamily II [Dechlorosoma suillum PS]
Length = 473
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 176/404 (43%), Positives = 250/404 (61%), Gaps = 22/404 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F +GL +L+A+ + GYT+PT +Q+QAIPA ++GRDL+ +QTG+GKTA F LP L
Sbjct: 1 MLFTDLGLKAEILRAIAEQGYTEPTPIQQQAIPAVLAGRDLMACAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ ++ + LN+ K PR+L+L PTRELALQV + Y
Sbjct: 61 QLLSQAQ----AGESPLNRLARK--------------PRVLILAPTRELALQVEESVRTY 102
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +K++S+ GG+ Q+ L R +IL+A PGRL+DH+N ++ S ++ILVLDE
Sbjct: 103 GQHLP-LKSMSMFGGVGMNPQIAALKRGVDILVACPGRLLDHINQRTLDLSGIEILVLDE 161
Query: 181 ADRMLDMGFINDIEKIVDATPVT--RQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
ADRMLDMGFI DI KI+ P RQ +LFSAT + +A + DP ++V
Sbjct: 162 ADRMLDMGFIRDIRKILALLPPNGKRQNLLFSATFSDEIKELARSFLHDPQSIEVARRNT 221
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ ++Q ++ VD K+ LL +L ++ Q ++FT TK AD ++ RL+ G +A
Sbjct: 222 TVETVSQKVIHVDREKKKDVLL-HLFENRGWNQVLIFTRTKHGADALSRRLDKEGIRSAA 280
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
LHG+ Q AR R L + G++ LVATD+AARGID+ + +V NY+LP EDYVHRIG
Sbjct: 281 LHGNKTQGARVRALTEFKEGKLVALVATDIAARGIDIDQLPYVVNYELPNVAEDYVHRIG 340
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
RTGRAG G A+SLV H ER N++ IER K+ + EV+ GFEP
Sbjct: 341 RTGRAGAEGEAISLVCHDERDNLRSIERLIKKDLEKEVLPGFEP 384
>gi|407714673|ref|YP_006835238.1| ATP-dependent RNA helicase RhlE [Burkholderia phenoliruptrix
BR3459a]
gi|407236857|gb|AFT87056.1| ATP-dependent RNA helicase RhlE [Burkholderia phenoliruptrix
BR3459a]
Length = 530
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 177/402 (44%), Positives = 247/402 (61%), Gaps = 22/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ ++GYT PT +Q QAIPA ++G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ S +P + + R L+LTPTRELA QV + Y
Sbjct: 61 QRLHS----MPPLAAASGKRAV----------------RALILTPTRELAAQVEESVRAY 100
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+K +K+ + GG+ Q+ L +I++ATPGRL+DHM I+ SHL+ILVLDE
Sbjct: 101 GKYLK-LKSTVMFGGVGINPQIGALKSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDE 159
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + +A+N+ P +++V
Sbjct: 160 ADRMLDMGFIHDIKRVLAKLPPKRQNLLFSATFSDEIKALADNLLDSPALIEVARRNTTA 219
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I VD K LL +L++ Q +VFT TK A+ +A++L G A +H
Sbjct: 220 ETVAQKIHPVDRD-KKRELLTHLIKQHNWFQVLVFTRTKHGANRLAEQLTKDGISALAIH 278
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + G +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 279 GNKSQSARTRALAEFKDGTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 338
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G AVSLV E +K IE+ K+ +P EVI GFEP
Sbjct: 339 GRAGATGEAVSLVCVDELQLLKDIEKLIKRPVPQEVIAGFEP 380
>gi|357013855|ref|ZP_09078854.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
elgii B69]
Length = 433
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 172/394 (43%), Positives = 249/394 (63%), Gaps = 24/394 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+ + L +LKAL K YT+PT +QEQAIP ++GRDL +QTG+GKTAAF+LP +
Sbjct: 1 MTFEQLKLIPPILKALAKENYTQPTPIQEQAIPPVLAGRDLFGCAQTGTGKTAAFLLPII 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ S++ + P K+ + R L+LTPTRELA+Q++ + Y
Sbjct: 61 -QLLSAQQRRPSGKRVI---------------------RSLILTPTRELAIQISDNFKAY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +++ I+GG+ Q Q L + +IL+ATPGRLID MN G + H+QILVLDE
Sbjct: 99 GRFLN-LRSAVIVGGVSQKAQEQALEQGMDILIATPGRLIDLMNQGFADLRHVQILVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+D+ +I+ P RQT+ FSAT+ + ++ +++ +P+ +++ +
Sbjct: 158 ADRMLDMGFIHDMRRIIAKLPAKRQTLFFSATMPPEITSLVDSLLTNPMKIEITPVSSTA 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I QS+ FVD +K LL LL+DK + A+VFT TK AD + L + A +H
Sbjct: 218 ERIKQSLYFVDKP-NKLPLLIDLLQDKSIESALVFTRTKHGADRLVKGLTKATITAQAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD QNAR L N ++G ++LVATD+AARGID+ ++HV NY+LP PE YVHRIGRT
Sbjct: 277 GDKSQNARQAALNNFKQGVTRMLVATDIAARGIDIEELSHVINYNLPNIPETYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
GRAG +G A+S + E +K IE+ KQ+IP+
Sbjct: 337 GRAGLSGIAISFCEYEEIPYLKDIEKLIKQKIPV 370
>gi|319762158|ref|YP_004126095.1| dead/deah box helicase domain-containing protein [Alicycliphilus
denitrificans BC]
gi|317116719|gb|ADU99207.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
BC]
Length = 564
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 177/404 (43%), Positives = 249/404 (61%), Gaps = 22/404 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+ + L +L+A+ + GY PT +Q QAIPA ++G DL+ +QTG+GKTAAF LP L
Sbjct: 1 MTFEELKLAPAILQAVQEQGYQNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ A + + P RF R LVLTPTRELA QV + Y
Sbjct: 61 HRLA--QGQAPTS------------------RFGGRGVRALVLTPTRELAAQVEESVRTY 100
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ IK+ I GG+ Q++ + R ++L+ATPGRL+D G I+ S ++ILVLDE
Sbjct: 101 GKHLD-IKSTVIFGGVGMNPQIERIKRGVDVLVATPGRLLDLQQQGFIDLSQVEILVLDE 159
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+D++K++ P +Q++LFSAT + +A + DP ++V
Sbjct: 160 ADRMLDMGFIHDVKKVLALLPKAKQSLLFSATFSDEIRELAAGLLNDPQSIQVTPRNTTV 219
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I+Q I V K LL +++++ Q +VFT TK A+ +A+ L G A LH
Sbjct: 220 QRISQVIHPVGRGKKKQVLL-HIIQEHDWSQVLVFTRTKFGANNVAEYLTKHGVQAMALH 278
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR + LE + G+I+ LVATD+AARGID+ + HV NY++P PEDYVHRIGRT
Sbjct: 279 GNKSQSARTQALEGFKSGQIRALVATDIAARGIDIDDLPHVVNYEIPNVPEDYVHRIGRT 338
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRAG+ G AVSLV E + +IERFTKQ+IP++VI GF P +
Sbjct: 339 GRAGKEGQAVSLVCMDEEGFMMEIERFTKQEIPVQVIEGFGPDE 382
>gi|299067900|emb|CBJ39113.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum CMR15]
Length = 548
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 175/406 (43%), Positives = 252/406 (62%), Gaps = 19/406 (4%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL + +++A+ ++GY +PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ ++ + NK+ T +R+ R LVLTPTRELA QV + Y
Sbjct: 61 HRLSAVQP-------------NKVQT-PNGMRYPI---RALVLTPTRELAAQVEESVRAY 103
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ +K++ + GG+ Q+ L R +I++ATPGRL+DH+ I+ SH+++LVLDE
Sbjct: 104 GKYLP-LKSMVMFGGVGINPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDE 162
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI KI++ P RQ +LFSAT + +A+ + P +++V
Sbjct: 163 ADRMLDMGFIHDIRKILNILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTTA 222
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I VD K LL L+ D Q +VFT TK A+ +A++L G A +H
Sbjct: 223 ETVEQRIYPVDR-ERKRELLAKLVSDNDWHQVLVFTRTKHGANRLAEQLTRDGIPALAIH 281
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + G +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 282 GNKSQSARTRALSEFKAGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 341
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
GRAG G A+SLV E ++ IER K+++P V++GFEP I
Sbjct: 342 GRAGAQGEAISLVCVDEHGLLRDIERLIKRELPRTVLSGFEPDPTI 387
>gi|351731064|ref|ZP_08948755.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax
radicis N35]
Length = 620
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 179/429 (41%), Positives = 258/429 (60%), Gaps = 26/429 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGR-------DLIVSSQTGSGKTAA 54
F +GL +++A+ +GYT+PT VQ +AIP A+ G DL+VSSQTGSGKTAA
Sbjct: 49 GFIELGLAPELVQAVADLGYTQPTSVQLKAIPLAMGGGNDATKFIDLMVSSQTGSGKTAA 108
Query: 55 FMLPALHKFASSKNKIPVMKK-----NLNQNNNKIYTHKERLR---------FKPAQPRM 100
F+LP LH + + ++ ++ + + +R + FK A P
Sbjct: 109 FLLPVLHTLINQQAAAEAEERAAFERSVAEAAERGEPAPKRAKRKDPTSSRNFKAATPGA 168
Query: 101 LVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160
L+L PTRELA QV + + ++ +++GGMPY Q+ L +N ++++ATPGRL+
Sbjct: 169 LILCPTRELAQQVAHDAIDLVKHCRGLRVANVVGGMPYQLQIAKL-QNADLVVATPGRLL 227
Query: 161 DHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNM 220
D S +I +Q LV+DEADRMLD+GF +D+ ++ T +QTM+FSAT + +
Sbjct: 228 DLQRSMQIKLDKVQFLVVDEADRMLDLGFSDDLAELNQLTAQRKQTMMFSATFAPRIQQL 287
Query: 221 AENITKDP----LILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFT 276
A + D + ++S ++K NI Q + + D+ HK ++LD+ LRD + QA+VF
Sbjct: 288 AMRVMHDGGSSVQKVTIDSPQEKHANIKQMLYWADNAQHKRKMLDHWLRDTTINQAIVFA 347
Query: 277 ATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVP 336
+T+ + D +A+ L GF A LHG L Q RNR L LR G+++ILVATDVAARGIDVP
Sbjct: 348 STQVECDGLANDLQQEGFSAVALHGALSQGLRNRRLMALRAGQVQILVATDVAARGIDVP 407
Query: 337 AITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEV 396
ITHVFN+ LP EDY HRIGRTGRAGR+G A++ +R I IE +++QQ EV
Sbjct: 408 TITHVFNFGLPMKAEDYTHRIGRTGRAGRDGLAITFAEFRDRRKIYDIESYSRQQFKAEV 467
Query: 397 INGFEPKKR 405
I G EP +R
Sbjct: 468 IPGMEPSQR 476
>gi|115375824|ref|ZP_01463075.1| ATP-dependent RNA helicase DeaD [Stigmatella aurantiaca DW4/3-1]
gi|310820250|ref|YP_003952608.1| ATP-dependent RNA helicase rhle [Stigmatella aurantiaca DW4/3-1]
gi|115367134|gb|EAU66118.1| ATP-dependent RNA helicase DeaD [Stigmatella aurantiaca DW4/3-1]
gi|309393322|gb|ADO70781.1| ATP-dependent RNA helicase RhlE [Stigmatella aurantiaca DW4/3-1]
Length = 496
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 168/400 (42%), Positives = 246/400 (61%), Gaps = 23/400 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F + L E +L+A+ GYT PT +Q++AIP A++G+D++ +QTG+GKTAAF LP L
Sbjct: 1 MTFDELKLSEPLLRAVKAEGYTTPTPIQQRAIPPALTGQDVLGCAQTGTGKTAAFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ ++ ++ P + + R+LVLTPTRELA Q+ + + Y
Sbjct: 61 HRLSAGRSPPPAQGRPI---------------------RVLVLTPTRELASQIADSFQAY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G + A+ I GG+ Q Q L R ++L+ATPGRL+D M G +++ L++ VLDE
Sbjct: 100 GRFTGLSWAV-IFGGVGQHAQEQTLRRGVDVLIATPGRLLDLMGQGLVSYKALEVFVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+D+++I+ A P RQT+ FSAT+ + ++A+ I K P+ ++V
Sbjct: 159 ADRMLDMGFIHDVKRIISALPPKRQTLFFSATMPPEIQSLAQGILKSPVRVEVTPESTTA 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q + FV+ K LL +LL D + +A+VFT TK A+ +A L S A +H
Sbjct: 219 ETVEQKMFFVER-EQKRHLLVHLLGDASIRRALVFTRTKHGANRVAKHLASSRISAEAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ QNAR R L + G ++LVATD+AARGID+ ITHV N+DLP PE YVHRIGRT
Sbjct: 278 GNKSQNARERALGAFKDGSCRVLVATDIAARGIDIEGITHVINFDLPNIPESYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGF 400
GRAG G A+S + ER ++ IER ++Q+P+ + F
Sbjct: 338 GRAGAVGTALSFCDGEERAYLRDIERTIRRQVPVMADHPF 377
>gi|71906517|ref|YP_284104.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal, partial
[Dechloromonas aromatica RCB]
gi|71846138|gb|AAZ45634.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Dechloromonas aromatica RCB]
Length = 425
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 172/402 (42%), Positives = 243/402 (60%), Gaps = 22/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL +L+A+ GY PT +Q+QAIPA ++GRDL+ ++QTG+GKTA F LP L
Sbjct: 1 MHFSDLGLKAELLRAVADQGYDTPTPIQQQAIPAVMTGRDLMATAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ S N +RL PR+LVLTPTRELA+QV + Y
Sbjct: 61 HRLCSGPN--------------------DRLTRVAKTPRVLVLTPTRELAIQVEESVRTY 100
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ I ++++ GG+ Q+ L R +IL+ATPGRL+DH+ ++ S ++I VLDE
Sbjct: 101 GKHLP-ITSLAVFGGVGINPQIANLRRGVDILVATPGRLLDHVQQRTVDLSKIEIFVLDE 159
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ ++FSAT + +A + +P + V +
Sbjct: 160 ADRMLDMGFIRDIRKIIALLPKQRQNLMFSATFSPDIRELAAGLLHNPASVDVAARNTAA 219
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ +TQ ++ + K LL +L + Q +VF TK AD ++ L +G +A +H
Sbjct: 220 ETVTQRVIETNRD-QKKELLCHLFETRGWHQVLVFARTKHGADALSKTLEKAGIKSAAIH 278
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD Q AR R L + G++ LVATD+AARGID+ A+ +V NY+LP EDYVHRIGRT
Sbjct: 279 GDKSQGARTRALTEFKEGKLVALVATDIAARGIDIDALPYVINYELPNVAEDYVHRIGRT 338
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G A+SLV+H ER +++ IER K+ + VI GFEP
Sbjct: 339 GRAGMEGEAISLVSHDERGSLRDIERLIKRDLERVVIPGFEP 380
>gi|237798154|ref|ZP_04586615.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331021006|gb|EGI01063.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 629
Score = 321 bits (823), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 252/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N +P + R P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERLFP--NGVPDKSQ----------------RHGPRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KLYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q ++FT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAANHKRSLLAHLITVGAWEQVLIFTRTKHGANRLAEYLDKHGLAAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++I+VATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+IP + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIPDGDLMGFD 381
>gi|17545258|ref|NP_518660.1| ATP-dependent RNA helicase [Ralstonia solanacearum GMI1000]
gi|17427549|emb|CAD14067.1| probable atp-dependent rna helicase protein [Ralstonia solanacearum
GMI1000]
Length = 540
Score = 321 bits (823), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 176/407 (43%), Positives = 250/407 (61%), Gaps = 21/407 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL + +++A+ ++GY +PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYT-HKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
H+ ++ + NK+ T H R R LVLTPTRELA QV +
Sbjct: 61 HRLSAVQP-------------NKVQTPHGMRYPI-----RALVLTPTRELAAQVEESVRA 102
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
YG Y+ +K++ + GG+ Q+ L R +I++ATPGRL+DH+ I+ SH+++LVLD
Sbjct: 103 YGKYLP-LKSMVMFGGVGINPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLD 161
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DI KI++ P RQ +LFSAT + +A+ + P +++V
Sbjct: 162 EADRMLDMGFIHDIRKILNILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTT 221
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+ + Q I VD K LL L+ D Q +VFT TK A+ +A++L G A +
Sbjct: 222 AETVEQRIYPVDR-ERKRELLAKLVSDNDWHQVLVFTRTKHGANRLAEQLTRDGIPALAI 280
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HG+ Q+AR R L + G +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGR
Sbjct: 281 HGNKSQSARTRALSEFKAGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGR 340
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
TGRAG G A+SLV E ++ IER K+++P V+ GFEP I
Sbjct: 341 TGRAGAQGEAISLVCVDEHGLLRDIERLIKRELPRTVLAGFEPDPTI 387
>gi|417950107|ref|ZP_12593235.1| ATP-dependent RNA helicase [Vibrio splendidus ATCC 33789]
gi|342807185|gb|EGU42381.1| ATP-dependent RNA helicase [Vibrio splendidus ATCC 33789]
Length = 551
Score = 321 bits (823), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 173/402 (43%), Positives = 245/402 (60%), Gaps = 26/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +LKA+ GY KP+ +QE+A+PA ++G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MSFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ K P +++N Q R LVLTPTRELA QV + +Y
Sbjct: 61 ELLS----KGPRVRQN--------------------QVRALVLTPTRELAAQVNGSVVKY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G+ + ++ + GG+ QMQ L + ++L+ATPGRL+D N + F L+ILVLDE
Sbjct: 97 GINLPLTSSV-VFGGVKINPQMQKLRKGSDVLVATPGRLLDLYNQNAVRFDQLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ +LFSAT + N+A+ + +P+ + V+
Sbjct: 156 ADRMLDMGFIRDIRKILAFLPKKRQNLLFSATFSDDIRNLAKGLVNNPVEISVSPANSTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
K + QSI VD K+ +L L++D Q +VF+ TK A+ +A L+ G AAP+H
Sbjct: 216 KTVEQSIYPVDK-KRKSPMLAKLIKDNDWRQVLVFSKTKHGANKLARFLDEQGITAAPIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + LEN + G++++LVATD+AARGID+P + V N+DLP EDY HRIGRT
Sbjct: 275 GNKSQGARTKALENFKTGKVRVLVATDIAARGIDIPQLPQVVNFDLPHVSEDYAHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G A+SLV E + IER +Q + + GF P
Sbjct: 335 GRAGEVGKAISLVCADEAGELFGIERLIQQVLERRELEGFSP 376
>gi|148975750|ref|ZP_01812581.1| ATP-dependent RNA helicase RhlE [Vibrionales bacterium SWAT-3]
gi|145964823|gb|EDK30075.1| ATP-dependent RNA helicase RhlE [Vibrionales bacterium SWAT-3]
Length = 551
Score = 321 bits (822), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 174/402 (43%), Positives = 246/402 (61%), Gaps = 26/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +LKA+ GY KP+ +QE+A+PA ++G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MSFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ K P +++N Q R LVLTPTRELA QV + +Y
Sbjct: 61 ELLS----KGPRVRQN--------------------QVRALVLTPTRELAAQVNGSVVKY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
GL + ++ + GG+ QMQ L + ++L+ATPGRL+D N + F L+ILVLDE
Sbjct: 97 GLNLPLTSSV-VFGGVKINPQMQKLRKGSDVLVATPGRLLDLYNQNAVRFDQLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ +LFSAT + ++A+ + +P+ + V+
Sbjct: 156 ADRMLDMGFIRDIRKILAFLPKKRQNLLFSATFSDDIRSLAKGLVNNPVEISVSPANSTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
K + QSI VD K+ +L L++D Q +VF+ TK A+ +A L+ G AAP+H
Sbjct: 216 KTVEQSIYPVDK-KKKSPMLAKLIKDNDWRQVLVFSKTKHGANKLARFLDEQGITAAPIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + LEN + G++++LVATD+AARGID+P + V N+DLP EDYVHRIGRT
Sbjct: 275 GNKSQGARTKALENFKTGKVRVLVATDIAARGIDIPQLPQVVNFDLPHVSEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G A+SLV E + IER +Q + + GF P
Sbjct: 335 GRAGEVGKAISLVCADEVGELFGIERLIQQVLERRELEGFSP 376
>gi|347760077|ref|YP_004867638.1| RNA helicase [Gluconacetobacter xylinus NBRC 3288]
gi|347579047|dbj|BAK83268.1| RNA helicase [Gluconacetobacter xylinus NBRC 3288]
Length = 445
Score = 321 bits (822), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 172/393 (43%), Positives = 238/393 (60%), Gaps = 25/393 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F + L E +L+AL + GYT+PT +Q AIP + GRDL+ +QTG+GKTAAF LP L
Sbjct: 3 TFADLHLAEPLLRALDEEGYTQPTPIQAGAIPYLLEGRDLLGLAQTGTGKTAAFALPILD 62
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ +E+ R P R LVL PTRELA Q+ + Y
Sbjct: 63 RL-----------------------FREKGRAHPKGARALVLAPTRELASQIGESFASYA 99
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+M+ A+ + GG+ RQ++ L R ++L+A PGRL+D M G ++ S L++LVLDEA
Sbjct: 100 RHMRFSHAV-VFGGVGQGRQIEALRRGVDVLVAAPGRLLDLMGQGHVDLSGLEVLVLDEA 158
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGF+ DI KIV A P RQT+LFSAT+ + ++A + +DP ++V
Sbjct: 159 DRMLDMGFVRDIRKIVAALPTDRQTLLFSATMPKSISDLAHGLLRDPATVQVTPPSSTVD 218
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
I Q+++FVD +K L L+ +V +AVVFT K +A+ +A L+ G A +HG
Sbjct: 219 RIRQAVMFVD-TANKREALKLLVDSPKVERAVVFTLMKHEANKVAAFLSEHGITAEAIHG 277
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ Q AR R + R G +K+LVATD+AARGIDV +THVFNYDLP PE YVHRIGRT
Sbjct: 278 NKSQGARERAMSGFRSGNVKVLVATDIAARGIDVDDVTHVFNYDLPNVPESYVHRIGRTA 337
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
RAGR G+AVSL + +R ++ IE+ + IP+
Sbjct: 338 RAGREGWAVSLCDAEQRAWLRDIEKNIGKAIPV 370
>gi|421505460|ref|ZP_15952398.1| DEAD/DEAH box helicase [Pseudomonas mendocina DLHK]
gi|400343869|gb|EJO92241.1| DEAD/DEAH box helicase [Pseudomonas mendocina DLHK]
Length = 628
Score = 321 bits (822), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 252/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKTA F LP L
Sbjct: 1 MSFASLGLSEALVRAIESAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTAGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ P + Q R P QPR+LVLTPTRELA QV + +
Sbjct: 61 ERL------FPAGHPDREQ------------RHGPRQPRVLVLTPTRELAAQVH---DSF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+Y + +K +S I GG+ Q+Q L++ ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KIYARDLKFVSACIFGGVGMNPQVQALAKGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI+D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFIHDVKKVLARLPAQRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAASHKRALLAHLITQGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + +++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKANKVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+IP + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIPDGDLMGFD 381
>gi|379725028|ref|YP_005317159.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus 3016]
gi|386727777|ref|YP_006194103.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus K02]
gi|378573700|gb|AFC34010.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus 3016]
gi|384094902|gb|AFH66338.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus K02]
Length = 422
Score = 321 bits (822), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 172/394 (43%), Positives = 249/394 (63%), Gaps = 24/394 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+ + L ++KAL K YT+PT +QEQAIP ++GRDL +QTG+GKTAAF+LP +
Sbjct: 1 MTFQQLQLIPPIIKALAKENYTQPTPIQEQAIPPVLAGRDLFGCAQTGTGKTAAFLLPII 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
++ + + N ++ R L+LTPTRELA+Q++ + Y
Sbjct: 61 QLLSTQQGR---------PNGKRVI-------------RSLILTPTRELAIQISDNAKAY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G + ++ I+GG+ Q QLL + +IL+ATPGRLID MN G ++ SH+QILVLDE
Sbjct: 99 GCFTN-LRYGVIVGGVSQRPQEQLLEQGMDILIATPGRLIDLMNQGFVDLSHVQILVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+D+++I+ PV RQT+ FSAT+ + ++ ++ K+P+ +++ +
Sbjct: 158 ADRMLDMGFIHDMKRIIAKLPVKRQTLFFSATMPPEITSLVNSLLKNPVKIEITPVSSTA 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q + +VD +K LL LL+DK + A+VFT TK AD + L + A +H
Sbjct: 218 ERIKQMLYYVDK-PNKLLLLIDLLQDKSIASALVFTRTKHGADRVVRGLTKAKITAQAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD QNAR L N + G ++LVATD+AARGID+ ++HV NY+LP PE YVHRIGRT
Sbjct: 277 GDKSQNARQAALNNFKSGATRLLVATDIAARGIDIEELSHVINYNLPNIPETYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
GRAG +G A+S + E +K IE+ TKQ+IP+
Sbjct: 337 GRAGLSGIAISFCENEEIPYLKDIEKLTKQKIPV 370
>gi|340777917|ref|ZP_08697860.1| DEAD/DEAH box helicase domain-containing protein [Acetobacter aceti
NBRC 14818]
Length = 432
Score = 321 bits (822), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 171/393 (43%), Positives = 241/393 (61%), Gaps = 25/393 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F + L E +L+AL + GY++PT +Q Q+IP ++GRDL+ +QTG+GKTAAF LP L
Sbjct: 3 TFADLQLAEPLLRALTEEGYSEPTPIQAQSIPYLLAGRDLLGLAQTGTGKTAAFALPILQ 62
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ ++ P P R+LVL PTRELA Q+ + + Y
Sbjct: 63 HLLTHRHAAP-----------------------PKGARVLVLAPTRELASQIDDSFKSYA 99
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+MK + I GG+ RQ++ + R ++L+A PGRL+D M G I+ L+ILVLDEA
Sbjct: 100 RHMKLTHTV-IFGGVGQGRQVEAMRRGVDVLVAAPGRLLDLMGQGFIDLRDLEILVLDEA 158
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGF+ DI++IV A P RQT+LFSAT+ + +A ++ +DP ++V
Sbjct: 159 DRMLDMGFVRDIKRIVAALPRDRQTLLFSATMPNSITELAGSLLRDPAKVEVTPPSSTVD 218
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
I Q ++FVD K+ LL LL +V +AVVFT K +A+ +A+ LN +G A +HG
Sbjct: 219 RIRQVVMFVDPDQKKDALL-LLLESPKVVRAVVFTLMKHEANKVAEFLNKNGITAEAIHG 277
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ Q AR R + R G +K+LVATD+AARGIDV ++HVFNYDLP PE YVHRIGRT
Sbjct: 278 NKSQGARERAMSGFRSGSVKVLVATDIAARGIDVDEVSHVFNYDLPNIPESYVHRIGRTA 337
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
RAGR G+A+S + +R +K IER + +P+
Sbjct: 338 RAGREGWAISFCDPEQRAWLKDIERTIGKSVPV 370
>gi|296116253|ref|ZP_06834870.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
ATCC 23769]
gi|295977187|gb|EFG83948.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
ATCC 23769]
Length = 431
Score = 321 bits (822), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 173/393 (44%), Positives = 237/393 (60%), Gaps = 25/393 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F + L E +L+AL + GYT PT +Q AIP + GRDL+ +QTG+GKTAAF LP L+
Sbjct: 3 TFADLHLAEPLLRALNEEGYTTPTPIQAGAIPYLLQGRDLLGLAQTGTGKTAAFALPILN 62
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+SK R P R LVL PTRELA Q+ + Y
Sbjct: 63 HLLTSKG-----------------------RAHPKGARALVLAPTRELASQIADSFASYA 99
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+MK A+ + GG+ RQ++ L R ++L+A PGRL+D M G ++ + L+ILVLDEA
Sbjct: 100 RHMKFTHAV-VFGGVGQGRQIEALRRGVDVLVAAPGRLLDLMGQGHVDLAGLEILVLDEA 158
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGF+ DI KIV P RQT+LFSAT+ + +A + +DP ++V
Sbjct: 159 DRMLDMGFVRDIRKIVATLPTDRQTLLFSATMPKSISELAHGLLRDPATVQVTPPSSTVD 218
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
I Q++++VD +K L L+ +V +AVVFT K +A+ +A LN G A +HG
Sbjct: 219 RIRQAVMYVD-TGNKREALKLLVDSPKVERAVVFTLMKHEANKVAAFLNEHGITAEAIHG 277
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ Q AR R + R G +K+LVATD+AARGIDV +THVFNYDLP PE YVHRIGRT
Sbjct: 278 NKSQGARERAMSGFRSGAVKVLVATDIAARGIDVDDVTHVFNYDLPNVPESYVHRIGRTA 337
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
RAGR+G+AVSL + +R ++ IE+ ++IP+
Sbjct: 338 RAGRDGWAVSLCDAEQRAWLRDIEKTIGKKIPV 370
>gi|221068762|ref|ZP_03544867.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
gi|220713785|gb|EED69153.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
Length = 707
Score = 321 bits (822), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 184/430 (42%), Positives = 255/430 (59%), Gaps = 26/430 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAI------SGR-DLIVSSQTGSGKTAA 54
F +GL +++A+ +GYT+PT VQ++AIP A+ SG DL+VSSQTGSGKTAA
Sbjct: 57 GFVELGLAPELVQAVADLGYTQPTQVQQKAIPLAMGEAADASGFIDLMVSSQTGSGKTAA 116
Query: 55 FMLPALHKF--------ASSKNKIPVMKKNLNQNNNKIYTHKER------LRFKPAQPRM 100
F+LP LH A +K + + + +R FK A P
Sbjct: 117 FLLPVLHTLIEQRAQADADAKAEFERLCAEATAKGEPVPKRNKRKDPTNSRNFKAAVPGA 176
Query: 101 LVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLI 160
LVL PTRELA QV + + I+ +++GG+PY Q+ L +N ++++ATPGRL+
Sbjct: 177 LVLCPTRELAQQVAHDAIELVKHCRGIRIANVVGGIPYQLQIAKL-QNADLVVATPGRLL 235
Query: 161 DHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNM 220
D S +I +Q LV+DEADRMLD+GF +D+ ++ T +QTM+FSAT V +
Sbjct: 236 DLQRSMQIKLDKVQFLVVDEADRMLDLGFSDDLAEVNVMTAQRKQTMMFSATFAPRVQQL 295
Query: 221 AENITKDPLI----LKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFT 276
A + D + V++ ++K +I Q + + D+ HK ++LD+ LRD + QA+VF
Sbjct: 296 AMRVMHDNGSGVKKVTVDTPQEKHASIKQVLFWADNAQHKRKMLDHWLRDSSINQAIVFA 355
Query: 277 ATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVP 336
+T+ + D +A L GF A LHG L Q RNR L LR G+++ILVATDVAARGIDVP
Sbjct: 356 STQVECDGLATDLQQDGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGIDVP 415
Query: 337 AITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEV 396
ITHVFNY LP EDY HRIGRTGRAGR G AV+ +R + IE +T+QQ E
Sbjct: 416 TITHVFNYGLPMKAEDYTHRIGRTGRAGREGTAVTFAEFRDRRRVFDIEGYTRQQFKAET 475
Query: 397 INGFEPKKRI 406
I G EP++R
Sbjct: 476 IPGMEPQQRF 485
>gi|337752121|ref|YP_004646283.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus KNP414]
gi|336303310|gb|AEI46413.1| DEAD/DEAH box helicase domain protein [Paenibacillus mucilaginosus
KNP414]
Length = 422
Score = 320 bits (821), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 172/394 (43%), Positives = 249/394 (63%), Gaps = 24/394 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+ + L ++KAL K YT+PT +QEQAIP ++GRDL +QTG+GKTAAF+LP +
Sbjct: 1 MTFQQLELIPPIIKALAKENYTQPTPIQEQAIPPVLAGRDLFGCAQTGTGKTAAFLLPII 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
++ + + N ++ R L+LTPTRELA+Q++ + Y
Sbjct: 61 QLLSTQQGR---------PNGKRVI-------------RSLILTPTRELAIQISDNAKAY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G + ++ I+GG+ Q QLL + +IL+ATPGRLID MN G ++ SH+QILVLDE
Sbjct: 99 GCFTN-LRYGVIVGGVSQRPQEQLLEQGMDILIATPGRLIDLMNQGFVDLSHVQILVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+D+++I+ PV RQT+ FSAT+ + ++ ++ K+P+ +++ +
Sbjct: 158 ADRMLDMGFIHDMKRIIAKLPVKRQTLFFSATMPPEITSLVNSLLKNPVKIEITPVSSTA 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q + +VD +K LL LL+DK + A+VFT TK AD + L + A +H
Sbjct: 218 ERIKQMLYYVDK-PNKLLLLIDLLQDKSIASALVFTRTKHGADRVVRGLTKAKITAQAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD QNAR L N + G ++LVATD+AARGID+ ++HV NY+LP PE YVHRIGRT
Sbjct: 277 GDKSQNARQAALNNFKSGATRLLVATDIAARGIDIEELSHVINYNLPNIPETYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
GRAG +G A+S + E +K IE+ TKQ+IP+
Sbjct: 337 GRAGLSGIAISFCENEEIPYLKDIEKLTKQKIPV 370
>gi|399010690|ref|ZP_10713052.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM17]
gi|398106181|gb|EJL96229.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM17]
Length = 618
Score = 320 bits (821), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E ++ A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ P + +Q R P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERL------FPNGHPDKSQ------------RHGPRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+Y + +K +S I GG+ Q+Q ++R ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KVYARDLKFVSACIFGGVGMNPQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAASHKRALLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+IP + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIPDGDLMGFD 381
>gi|167617991|ref|ZP_02386622.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis Bt4]
Length = 435
Score = 320 bits (821), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 246/402 (61%), Gaps = 23/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ ++GYT+PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + Y R R L+LTPTRELA QV + Y
Sbjct: 61 QRL------------------HAFYAENRGAR---RAVRALILTPTRELAAQVEESVRAY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+K +++ + GG+ Q+ L R +I++ATPGRL+DHM I+ S L ILVLDE
Sbjct: 100 SKYVK-LRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + ++A+++ P +++V
Sbjct: 159 ADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTA 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q I VD K LL +L+R+ Q +VFT TK A+ +A++L G A +H
Sbjct: 219 ETIAQKIHPVDRD-RKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 278 GNKSQSARTRALSEFKNCTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG NG AVSLV E+ ++ IER K++I EVI GFEP
Sbjct: 338 GRAGANGEAVSLVCVDEKQLLRDIERLIKREISQEVIPGFEP 379
>gi|83719171|ref|YP_441164.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
gi|257140174|ref|ZP_05588436.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
gi|83652996|gb|ABC37059.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
Length = 482
Score = 320 bits (821), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 246/402 (61%), Gaps = 23/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ ++GYT+PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + Y R R L+LTPTRELA QV + Y
Sbjct: 61 QRL------------------HAFYAENRGARRAV---RALILTPTRELAAQVEESVRAY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+K +++ + GG+ Q+ L R +I++ATPGRL+DHM I+ S L ILVLDE
Sbjct: 100 SKYVK-LRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + ++A+++ P +++V
Sbjct: 159 ADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTA 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q I VD K LL +L+R+ Q +VFT TK A+ +A++L G A +H
Sbjct: 219 ETIAQKIHPVDRD-RKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 278 GNKSQSARTRALSEFKNCTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG NG AVSLV E+ ++ IER K++I EVI GFEP
Sbjct: 338 GRAGANGEAVSLVCVDEKQLLRDIERLIKREISQEVIPGFEP 379
>gi|349685730|ref|ZP_08896872.1| RNA helicase [Gluconacetobacter oboediens 174Bp2]
Length = 446
Score = 320 bits (821), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 172/393 (43%), Positives = 237/393 (60%), Gaps = 25/393 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F + L E +L+AL + GY PT +Q AIP + GRDL+ +QTG+GKTAAF LP L
Sbjct: 3 TFADLHLAEPLLRALDEEGYATPTPIQAGAIPYLLEGRDLLGLAQTGTGKTAAFALPILD 62
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ +E+ R P R LVL PTRELA Q+ + Y
Sbjct: 63 RL-----------------------FREKGRAHPKGARALVLAPTRELASQIGESFASYA 99
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+M+ A+ + GG+ RQ++ L R ++L+A PGRL+D M G ++ S L++LVLDEA
Sbjct: 100 RHMRFSHAV-VFGGVGQGRQIEALRRGVDVLVAAPGRLLDLMGQGHVDLSGLEVLVLDEA 158
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGF+ DI KIV A P RQT+LFSAT+ + ++A + +DP ++V
Sbjct: 159 DRMLDMGFVRDIRKIVAALPTDRQTLLFSATMPKTISDLAHGLLRDPATVQVTPPSSTVD 218
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
I Q+++FVD +K L L+ +V +AVVFT K +A+ +A LN G A +HG
Sbjct: 219 RIRQAVMFVD-TGNKREALKLLVDSPKVERAVVFTLMKHEANKVAAFLNEHGITAEAIHG 277
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ Q AR R + R G +K+LVATD+AARGIDV +THVFNYDLP PE YVHRIGRT
Sbjct: 278 NKSQGARERAMSGFRSGNVKVLVATDIAARGIDVDDVTHVFNYDLPNVPESYVHRIGRTA 337
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
RAGR G+AVSL + +R ++ IE+ ++IP+
Sbjct: 338 RAGREGWAVSLCDAEQRAWLRDIEKNIGKKIPV 370
>gi|402701108|ref|ZP_10849087.1| DEAD/DEAH box helicase-like protein [Pseudomonas fragi A22]
Length = 618
Score = 320 bits (821), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 176/403 (43%), Positives = 252/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
K P + +Q R P QPR+LVLTPTRELA QV E +
Sbjct: 61 EKL------FPNGHPDKSQ------------RHGPRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S + GG+ Q+Q L+R ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KLYARDLKFVSACVFGGVGTNPQVQALARGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + ++P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPSKRQNLLFSATFSKDITDLAGKLLRNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLPATHKRALLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGAVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|425902081|ref|ZP_18878672.1| putative ATP-dependent RNA helicase [Pseudomonas chlororaphis
subsp. aureofaciens 30-84]
gi|397892760|gb|EJL09237.1| putative ATP-dependent RNA helicase [Pseudomonas chlororaphis
subsp. aureofaciens 30-84]
Length = 618
Score = 320 bits (821), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E ++ A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ P + +Q R P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERL------FPNGHPDKSQ------------RHGPRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+Y + +K +S I GG+ Q+Q ++R ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KVYARDLKFVSACIFGGVGMNPQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAASHKRALLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+IP + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIPDGDLMGFD 381
>gi|329905919|ref|ZP_08274297.1| ATP-dependent RNA helicase RhlE [Oxalobacteraceae bacterium
IMCC9480]
gi|327547410|gb|EGF32236.1| ATP-dependent RNA helicase RhlE [Oxalobacteraceae bacterium
IMCC9480]
Length = 446
Score = 320 bits (820), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 174/414 (42%), Positives = 247/414 (59%), Gaps = 21/414 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL +++A+ + GYT PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFAQLGLSADIVRAVTEHGYTIPTPIQAQAIPAVLLGGDLLAGAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ ++S + N I R L+L PTRELA QV + Y
Sbjct: 61 HRLSTSTSA-----PTTNTATRPI--------------RALILAPTRELAAQVEESVRTY 101
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+K + + I GG+ Q+++L +IL+ATPGRL+DHM G +N S ++IL+LDE
Sbjct: 102 GKYLK-LTSTVIFGGVGINPQIKMLKHGVDILVATPGRLLDHMGQGTVNLSQVEILILDE 160
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI+K++ P RQ +LFSAT + +A+ + P +++V
Sbjct: 161 ADRMLDMGFIKDIKKVLAVLPKKRQNLLFSATFSEEIKTLADGLLNAPKMIEVARRNSTV 220
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q I VD K+ LL +L++ Q +VFT TK A+ + ++L G +H
Sbjct: 221 EIIAQKIYPVDRD-KKHPLLAHLIKTNNWPQVLVFTRTKHGANKLVEQLEKDGISGMAIH 279
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR + L + G++++LVATD+AARGID+ + HV NYDLP PEDYVHRIGRT
Sbjct: 280 GNKSQSARTKALAEFKDGKLQVLVATDIAARGIDIDQLPHVVNYDLPNIPEDYVHRIGRT 339
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRYR 414
GRAG G AVSLV E ++ IE+ K+++P EV+ GFEP R + R
Sbjct: 340 GRAGATGEAVSLVCVDEHEMLRDIEKLIKRELPKEVVPGFEPDPNARAQPIQLR 393
>gi|332528278|ref|ZP_08404283.1| DEAD/DEAH box helicase domain-containing protein [Hylemonella
gracilis ATCC 19624]
gi|332042298|gb|EGI78619.1| DEAD/DEAH box helicase domain-containing protein [Hylemonella
gracilis ATCC 19624]
Length = 570
Score = 320 bits (820), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 183/434 (42%), Positives = 255/434 (58%), Gaps = 27/434 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRD--------LIVSSQTGSGKTA 53
F +GL +++A+ +GYT+PT VQ++ IP A+ D L+VSSQTGSGKTA
Sbjct: 30 GFVELGLAPELIQAVADLGYTQPTAVQQRVIPLALPTHDPSHHGYNDLMVSSQTGSGKTA 89
Query: 54 AFMLPALHKF------ASSKNKIPVMKKNLNQNNNKIYTHKERLR--------FKPAQPR 99
AF+LP LH A+++ + + + K R FK A P
Sbjct: 90 AFLLPVLHTLIQQQADAANREREEYERACADAAAKGEPAPKRHKRKDPTNPRNFKAAVPG 149
Query: 100 MLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRL 159
LVL PTRELA QV + + ++ +++GGMPY Q+ L +N +++ATPGRL
Sbjct: 150 ALVLCPTRELAQQVAHDAIELVKHCRGLRIANVVGGMPYQLQIAKL-QNAGLVVATPGRL 208
Query: 160 IDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGN 219
+D S +I +Q LV+DEADRMLD+GF +D+ +I T RQTM+FSAT +
Sbjct: 209 LDLQRSMQIKLDQVQFLVVDEADRMLDLGFTDDLAEINALTANRRQTMMFSATFAPRIQQ 268
Query: 220 MAENITKDPLI----LKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVF 275
+A + D +++++ +K NI Q + + D+ HK LLD+ LRD + QA+VF
Sbjct: 269 LAMRVMHDNGSQVKKVQIDAPHEKHANIKQVLHWADNFAHKRALLDHWLRDANIDQAIVF 328
Query: 276 TATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDV 335
+T+ + D +A L +GF A LHG L Q RNR L LR G++K LVATDVAARGIDV
Sbjct: 329 ASTQVECDGLAADLQQAGFAAVALHGALSQGLRNRRLMALRSGQVKFLVATDVAARGIDV 388
Query: 336 PAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIE 395
P ITHVFN+ LP EDY HRIGRTGRAGR+G AV++ +R I IE +TKQ E
Sbjct: 389 PTITHVFNFGLPMKAEDYTHRIGRTGRAGRDGIAVTIAEFRDRRKIGDIEFYTKQPFKAE 448
Query: 396 VINGFEPKKRIRTY 409
I G EP++R+ ++
Sbjct: 449 AIPGLEPQQRMPSF 462
>gi|388542926|ref|ZP_10146218.1| DEAD/DEAH box helicase-like protein [Pseudomonas sp. M47T1]
gi|388279012|gb|EIK98582.1| DEAD/DEAH box helicase-like protein [Pseudomonas sp. M47T1]
Length = 649
Score = 320 bits (820), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 173/403 (42%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ P + +Q R P QPR+LVLTPTRELA QV + +
Sbjct: 61 ERL------FPNGHPDKSQ------------RHGPRQPRVLVLTPTRELAAQVH---DSF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+Y + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KIYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSKDITDLAGRLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + + HK LL +L+ Q +VFT TK A+ +A+ L G A
Sbjct: 220 TVERIEQRVYRLS-ASHKRSLLAHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLSAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++I+VATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGSVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+IP + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIPDGDLMGFD 381
>gi|389682761|ref|ZP_10174098.1| putative ATP-dependent RNA helicase [Pseudomonas chlororaphis O6]
gi|388553352|gb|EIM16608.1| putative ATP-dependent RNA helicase [Pseudomonas chlororaphis O6]
Length = 620
Score = 320 bits (820), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E ++ A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ P + +Q R P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERL------FPNGHPDKSQ------------RHGPRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+Y + +K +S I GG+ Q+Q ++R ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KVYARDLKFVSACIFGGVGMNPQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAASHKRALLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+IP + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIPDGDLMGFD 381
>gi|90416628|ref|ZP_01224559.1| putative ATP-dependent RNA helicase RhlE [gamma proteobacterium
HTCC2207]
gi|90331827|gb|EAS47055.1| putative ATP-dependent RNA helicase RhlE [gamma proteobacterium
HTCC2207]
Length = 549
Score = 320 bits (820), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 175/423 (41%), Positives = 248/423 (58%), Gaps = 27/423 (6%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
FK +GL +LKA+ GY P+ +Q +AIPA + GRD++ ++QTG+GKTA F LP L
Sbjct: 4 FKDLGLSAPILKAITAQGYDTPSPIQAKAIPAVLDGRDVMAAAQTGTGKTAGFTLPILQL 63
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
++ K R +P Q R L+LTPTRELA QV + YG
Sbjct: 64 LSAGK------------------------RAQPNQVRTLILTPTRELAAQVGESVATYGK 99
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+M A+ + GG+ QM L R ++L+ATPGRL+D + + F++L++LVLDEAD
Sbjct: 100 HMSLSSAV-VFGGVKINPQMMKLRRGVDVLVATPGRLMDLYSQNAVKFTYLEVLVLDEAD 158
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLDMGFI+DI++I+ P RQ ++FSAT + +A+ + +P+ + V
Sbjct: 159 RMLDMGFIHDIKRIISLLPKRRQNLMFSATFSDDIRKLAKGLVHNPIEISVTPRNATAPT 218
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
+TQSI VD K +L L+ D + GQA+VFT TK A+ + L G +AA +HG+
Sbjct: 219 VTQSIYTVDK-KQKAGVLTRLIHDNKWGQALVFTKTKHGANKLTKHLEAEGIVAAAIHGN 277
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
Q AR + L + G ++ILVATD+AARG+D+ + V N+DLP EDYVHRIGRTGR
Sbjct: 278 KSQGARTKALAGFKAGEVRILVATDIAARGLDIEQLPQVVNFDLPNVAEDYVHRIGRTGR 337
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI-RTYYSRYRFNNNNWK 421
AG G A+SLV+ E + IER T++ +P EV++GFEP + T+ R N K
Sbjct: 338 AGSTGTAISLVSADEVDLLSDIERLTQKLLPREVMDGFEPSHDVPETFLDRPVRTNKQRK 397
Query: 422 THN 424
N
Sbjct: 398 ALN 400
>gi|410089828|ref|ZP_11286438.1| helicase [Pseudomonas viridiflava UASWS0038]
gi|409762953|gb|EKN47946.1| helicase [Pseudomonas viridiflava UASWS0038]
Length = 634
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N +P + R P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERLFP--NGVPDKSQ----------------RHGPRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+Y + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KIYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + +A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSSDITALAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++I+VATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+IP + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIPDGDLMGFD 381
>gi|167568882|ref|ZP_02361756.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis C6786]
Length = 408
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 175/402 (43%), Positives = 247/402 (61%), Gaps = 23/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ ++GYT+PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ ++T R R L+LTPTRELA QV + Y
Sbjct: 61 QR---------------------LHTFYAENRGARRAVRALILTPTRELAAQVEESVRAY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+K +++ + GG+ Q+ L R +I++ATPGRL+DHM I+ S L ILVLDE
Sbjct: 100 SKYVK-LRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + ++A+++ P +++V
Sbjct: 159 ADRMLDMGFIHDIKRVLAKLPKKRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTA 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I VD K LL +L+R+ Q +VFT TK A+ +A++L G A +H
Sbjct: 219 ETVAQKIHPVDRD-RKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 278 GNKSQSARTRALAEFKSSTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG NG AVSLV E+ ++ IER K++I EVI GFEP
Sbjct: 338 GRAGANGEAVSLVCVDEKQLLRDIERLIKREISQEVIAGFEP 379
>gi|146305460|ref|YP_001185925.1| DEAD/DEAH box helicase [Pseudomonas mendocina ymp]
gi|145573661|gb|ABP83193.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp]
Length = 628
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 177/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ P + Q R P QPR+LVLTPTRELA QV + +
Sbjct: 61 ERL------FPDGHPDREQ------------RHGPKQPRVLVLTPTRELAAQVH---DSF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q L++ ++L+A PGRL+D N I+ SH++ILVL
Sbjct: 100 KLYARDLKFVSACIFGGVGMNPQVQALAKGVDVLVACPGRLLDLANQKAIDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI+D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFIHDVKKVLAKLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L G AA
Sbjct: 220 TVERIEQRV-FRLAASHKRALLAHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + +++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKANKVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+IP + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIPDGDLMGFD 381
>gi|373487181|ref|ZP_09577850.1| DEAD/DEAH box helicase domain protein [Holophaga foetida DSM 6591]
gi|372010063|gb|EHP10676.1| DEAD/DEAH box helicase domain protein [Holophaga foetida DSM 6591]
Length = 438
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 177/408 (43%), Positives = 249/408 (61%), Gaps = 22/408 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F ++GL +L+A+ + GY PT +Q QAIP + GRDL+ +QTG+GKTAAF LP L
Sbjct: 1 MSFDTLGLLPELLRAVREQGYETPTPIQAQAIPVVLQGRDLMGGAQTGTGKTAAFTLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ A P + + + I R LVLTPTRELA+QV + Y
Sbjct: 61 QRLA------PQASTSTSPAKHPI--------------RALVLTPTRELAMQVEESIRTY 100
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +++ +I GG+ Q+ L + EIL+ATPGRL+DH G + F L+ILVLDE
Sbjct: 101 GKHIP-LRSTTIFGGVNINPQIAALRKGVEILVATPGRLLDHHQQGTLRFDQLEILVLDE 159
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI+KI+ P RQ++LFSAT G + +A ++ KDP + V
Sbjct: 160 ADRMLDMGFIRDIKKILALLPAKRQSLLFSATFSGEIRELAASLLKDPASVDVAPRNSTT 219
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q + VD K LL +L++ K + Q +VFT TK A+ +A++L+ G A +H
Sbjct: 220 ELVKQVVHPVDR-ERKRALLAHLIQTKNLEQVLVFTRTKHGANRLAEQLDKDGISALAIH 278
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q R + L + ++G I++LVATD+AARG+D+ + HV NY+LP+ PEDYVHRIGRT
Sbjct: 279 GNKSQPQRIKALSDFKQGNIRVLVATDIAARGLDIDQLPHVVNYELPQVPEDYVHRIGRT 338
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
GRAG G A+SLV E +K IER K +P EV+ GF P I+
Sbjct: 339 GRAGSEGEALSLVCVDEHKLLKGIERLLKNPLPSEVVAGFAPDPAIKA 386
>gi|295107314|emb|CBL04857.1| Superfamily II DNA and RNA helicases [Gordonibacter pamelaeae
7-10-1-b]
Length = 445
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 172/412 (41%), Positives = 241/412 (58%), Gaps = 28/412 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F+ +GL E L A+ ++GY PT VQEQAIP A+ GRD++ ++ TG+GKT AF LP +
Sbjct: 36 TFQDLGLSETTLAAVAQMGYNAPTPVQEQAIPLALEGRDVVAAAVTGTGKTTAFALPVIE 95
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ +K KP PR LV++PTRELALQ+ AA +
Sbjct: 96 RIDRAK--------------------------KPGSPRALVVSPTRELALQIDAACTQLA 129
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
++ ++++GG+PY Q+ LSR +IL+ATPGRL D M G + ++ILVLDEA
Sbjct: 130 -KGSGLRVVTVVGGVPYKGQLSKLSRGVDILVATPGRLHDLMERGDVKLRDVEILVLDEA 188
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGF ++KIV ATP +RQT+LFSATLD V I +DP ++V +
Sbjct: 189 DRMLDMGFWPTMKKIVAATPSSRQTLLFSATLDRKVMQSVSAILRDPAFVEVAHKGETSD 248
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
I Q I+ V + K LL LL ++ + +VFT TK A+I +L +GF A +H
Sbjct: 249 TIEQFIVPVGS-MQKASLLRLLLAERGSKRVIVFTDTKTRAEICTGQLKRAGFRAESIHS 307
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
D Q R R L +G + +LVATDV ARGIDVP I +V NY+LP+ P+DYVHRIGRTG
Sbjct: 308 DKTQAQRKRALAAFSKGDVDVLVATDVLARGIDVPDIAYVVNYELPENPDDYVHRIGRTG 367
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRY 413
RAG G ++S V+ + + IE+ +IP + G++ + R +R+
Sbjct: 368 RAGEAGCSISFVSPEAKAQLLDIEKLLGSKIPTLAVEGYDATEAERALANRF 419
>gi|186475195|ref|YP_001856665.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
phymatum STM815]
gi|184191654|gb|ACC69619.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
STM815]
Length = 522
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 178/413 (43%), Positives = 248/413 (60%), Gaps = 36/413 (8%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ ++GYT PT +Q+QAIPA ++G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSEPLVRAVNELGYTSPTPIQQQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP------RMLVLTPTRELALQVT 114
+RL P P R L+LTPTRELA QV
Sbjct: 61 ----------------------------QRLLTMPPAPGGKRVVRALILTPTRELAAQVE 92
Query: 115 AATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQ 174
+ YG Y+K +K+ + GG+ Q+ L R +I++ATPGRL+DHM I+ SHL+
Sbjct: 93 ESVRAYGKYLK-LKSTVMFGGVGINPQIDALRRGVDIVVATPGRLLDHMQQKTIDLSHLE 151
Query: 175 ILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVN 234
ILVLDEADRMLDMGFI+DI++++ P RQ +LFSAT + +A+++ P +++V
Sbjct: 152 ILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLLFSATFSDEIKALADSLLDAPALIEVA 211
Query: 235 SIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGF 294
+ + Q I VD K LL +L++ Q +VFT TK A+ +A++L G
Sbjct: 212 RRNTTAETVAQKIHPVDRD-RKRELLTHLIKQHNWFQVLVFTRTKHGANRLAEQLTKDGI 270
Query: 295 LAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYV 354
A +HG+ Q+AR R L + +++LVATD+AARGID+ + HV N+DLP PEDYV
Sbjct: 271 SALAIHGNKSQSARTRALAEFKNNTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYV 330
Query: 355 HRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIR 407
HRIGRTGRAG G AVSLV E +K IE+ K+ +P EVI G+EP R
Sbjct: 331 HRIGRTGRAGATGEAVSLVCVDELQLLKDIEKLIKRAVPQEVIAGYEPDPNAR 383
>gi|319944884|ref|ZP_08019146.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
gi|319741454|gb|EFV93879.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
Length = 489
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 171/399 (42%), Positives = 240/399 (60%), Gaps = 24/399 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F +GL + +L+AL VGYT PT +Q +AIP ++GRDL+ ++QTG+GKTA F LP L
Sbjct: 14 SFSGLGLADPLLRALADVGYTNPTPIQAKAIPVVLTGRDLLAAAQTGTGKTAGFTLPILQ 73
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ +N + T K P +PR L+LTPTREL QV + + Y
Sbjct: 74 RLL----------------DNPMQTRK------PGRPRCLILTPTRELTAQVEESVKAYA 111
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
Y + I+++ I GG+ Q+Q L + +IL+ATPGRL+DH+ G ++ S ++I VLDEA
Sbjct: 112 KYTR-IRSVLIFGGVSINPQIQALRQPVDILVATPGRLLDHVQQGTVDLSGVEIFVLDEA 170
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGFI+DI +++ P RQ +LFSAT + ++A + +P + V +
Sbjct: 171 DRMLDMGFIHDIRRVIAKLPAKRQNLLFSATFSPEIRSLAHGLLDNPAEVDVAPRNTASE 230
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
+ QS V K LL YL+ +R Q +VFT TK A+ +A++L G A +HG
Sbjct: 231 LVAQSAHLVPKT-RKRALLSYLIGSRRWKQVLVFTKTKHGANRLAEQLGKDGIEAMAIHG 289
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ Q AR R L + G + +LVATD+AARG+D+ + HV NY+LP PEDYVHRIGRTG
Sbjct: 290 NKSQGARTRALSRFKDGSLPVLVATDIAARGLDIDELPHVVNYELPNVPEDYVHRIGRTG 349
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGF 400
RAG G AVSLV+ E + IER K+QIP + GF
Sbjct: 350 RAGHEGTAVSLVDREEMKLLTGIERLIKRQIPRVEVEGF 388
>gi|399519079|ref|ZP_10759887.1| ATP-dependent RNA helicase [Pseudomonas pseudoalcaligenes CECT
5344]
gi|399112903|emb|CCH36445.1| ATP-dependent RNA helicase [Pseudomonas pseudoalcaligenes CECT
5344]
Length = 632
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 177/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ P + Q R P QPR+LVLTPTRELA QV + +
Sbjct: 61 ERL------FPDGHPDREQ------------RHGPKQPRVLVLTPTRELAAQVH---DSF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q L++ ++L+A PGRL+D N I+ SH++ILVL
Sbjct: 100 KLYARDLKFVSACIFGGVGMNPQVQALAKGVDVLVACPGRLLDLANQKAIDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI+D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFIHDVKKVLAKLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L G AA
Sbjct: 220 TVERIEQRV-FRLAASHKRALLAHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + +++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKANKVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+IP + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIPDGDLLGFD 381
>gi|413963566|ref|ZP_11402793.1| DEAD/DEAH box helicase [Burkholderia sp. SJ98]
gi|413929398|gb|EKS68686.1| DEAD/DEAH box helicase [Burkholderia sp. SJ98]
Length = 502
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 179/407 (43%), Positives = 245/407 (60%), Gaps = 33/407 (8%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +L+A+ ++GY+ PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSEPLLRAVNELGYSSPTPIQLQAIPAVLKGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFA-----SSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTA 115
+ + + K PV R L+LTPTRELA QV
Sbjct: 61 QRLSQLAPVTGGAKRPV--------------------------RALILTPTRELAAQVEE 94
Query: 116 ATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQI 175
+ YG Y+ K+K+ + GG+ Q+ L R +I++ATPGRL+DHM I+ S L+I
Sbjct: 95 SVRAYGKYL-KLKSTVMFGGVGINPQIDALKRGVDIVVATPGRLLDHMQQKTIDVSQLEI 153
Query: 176 LVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNS 235
LVLDEADRMLDMGFI+DI++++ P RQ +LFSAT + +A+++ P +++V
Sbjct: 154 LVLDEADRMLDMGFIHDIKRVLARLPAKRQNLLFSATFSDEIKALADSLLDSPALIEVAR 213
Query: 236 IEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFL 295
+ + Q I VD K LL +L+R Q +VFT TK A+ +A++L G
Sbjct: 214 RNTTAETVDQKIHPVDRD-RKRELLTHLIRGNNWFQVLVFTRTKHGANRLAEQLTKDGIS 272
Query: 296 AAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVH 355
A +HG+ Q+AR R L + +++LVATD+AARGID+ + HV N+DLP PEDYVH
Sbjct: 273 ALAIHGNKSQSARTRALSEFKAETLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVH 332
Query: 356 RIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
RIGRTGRAG G AVSLV E +K IER K+ IP EVI GFEP
Sbjct: 333 RIGRTGRAGAEGEAVSLVCVDEHQLLKDIERLIKRPIPREVIPGFEP 379
>gi|332525968|ref|ZP_08402109.1| DEAD/DEAH box helicase domain-containing protein [Rubrivivax
benzoatilyticus JA2]
gi|332109519|gb|EGJ10442.1| DEAD/DEAH box helicase domain-containing protein [Rubrivivax
benzoatilyticus JA2]
Length = 500
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 175/402 (43%), Positives = 246/402 (61%), Gaps = 22/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
MNF +GL E +L+A+ + GY PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MNFSDLGLAEPLLRAVREQGYDVPTPIQAQAIPAVLQGGDLLAGAQTGTGKTAGFTLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ ++SK PV + +I R LVLTPTRELA QV + Y
Sbjct: 61 QRLSASK---PV-----RDSRGRIAV------------RALVLTPTRELAAQVEESVRAY 100
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ + ++ + GG+ Q+ L + +IL+ATPGRL+DH G ++ S +QILVLDE
Sbjct: 101 GKYLP-LTSMVMFGGVGMQPQIDRLRKGVDILVATPGRLLDHHGQGTLDLSQVQILVLDE 159
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI+K++ P +Q++LFSAT + +A+ + P +++V
Sbjct: 160 ADRMLDMGFIHDIKKVLAVLPQKKQSLLFSATFSDEIKALADRLLNQPALIEVARRNATA 219
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
I Q + V K LL +L+R Q +VFT K A+ +A+ LN G A +H
Sbjct: 220 DTIAQKVHPVGR-EKKKELLAHLIRQGDWHQVLVFTRMKHGANRLAEYLNEQGITAMAIH 278
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + L + G +++LVATD+AARGID+ + HV NY+LP PEDYVHRIGRT
Sbjct: 279 GNKSQGARTKALAEFKAGTLQVLVATDIAARGIDIDQLPHVVNYELPNVPEDYVHRIGRT 338
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG +G AVSLV E + ++ I+R K++IP++VI GFEP
Sbjct: 339 GRAGASGEAVSLVCLDEEIFLRDIQRLIKREIPVQVIPGFEP 380
>gi|289676388|ref|ZP_06497278.1| helicase, C-terminal:Type III restriction enzyme, res
subunit:DEAD/DEAH box helicase, N-terminal, partial
[Pseudomonas syringae pv. syringae FF5]
Length = 435
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N +P + R P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERL--FPNGVPDKSQ----------------RHGPRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KLYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++I+VATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|409418373|ref|ZP_11258368.1| DEAD/DEAH box helicase [Pseudomonas sp. HYS]
Length = 632
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 176/421 (41%), Positives = 258/421 (61%), Gaps = 25/421 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ P + +Q R P QPR+LVLTPTRELA QV + +
Sbjct: 61 ERL------FPGGHPDKSQ------------RHGPRQPRVLVLTPTRELAAQVH---DSF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+Y + +K +S I GG+ Q+Q +++ ++L+A PGRL+D G ++ SH++ LVL
Sbjct: 100 KVYARDLKFVSACIFGGVGMNPQVQAMAKGVDVLVACPGRLLDLAGQGSVDLSHVETLVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI+D++K++ P RQ +LFSAT + ++A+ + +P ++V
Sbjct: 160 DEADRMLDMGFIHDVKKVLARLPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + + HK LL +L+ Q +VFT TK A+ +A+ L G AA
Sbjct: 220 TVERIEQRVYRLP-ASHKRALLAHLITTGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++I+VATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGTVRIMVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK-RIRTYYSRYRFNN 417
RTGRAGR+G A+SLV E +K IER T+Q+IP + GF+ K +R R N
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERVTRQKIPDGDLMGFDASKVEAEKPETRERPQN 398
Query: 418 N 418
N
Sbjct: 399 N 399
>gi|222111864|ref|YP_002554128.1| dead/deah box helicase domain-containing protein [Acidovorax ebreus
TPSY]
gi|221731308|gb|ACM34128.1| DEAD/DEAH box helicase domain protein [Acidovorax ebreus TPSY]
Length = 616
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 188/440 (42%), Positives = 256/440 (58%), Gaps = 47/440 (10%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAI-SGRD-----LIVSSQTGSGKTAAF 55
F +GL +++A+ +GYT+PT VQ +AIP A+ SG D L+VSSQTGSGKTAAF
Sbjct: 38 GFIELGLAPELVQAVADLGYTEPTQVQTRAIPLAMGSGDDASFIDLMVSSQTGSGKTAAF 97
Query: 56 MLPALHKFASSKN-------------------------KIPVMKKNLNQNNNKIYTHKER 90
+LP LH + K P +KN Q N
Sbjct: 98 LLPVLHTLIRQQAEAEVAERAAFERAAAEAAARGEAPPKRP-KRKNPTQARN-------- 148
Query: 91 LRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPE 150
FK A P LVL PTRELA QV + K ++ +++GGMPY Q+ L +N
Sbjct: 149 --FKAATPGALVLCPTRELAQQVAHDAIDLVKHCKGLRIANVVGGMPYQLQIAKL-QNAN 205
Query: 151 ILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFS 210
+++ATPGRL+D S +I +Q LV+DEADRMLD+GF +D+ +I T +QTM+FS
Sbjct: 206 LVVATPGRLLDLQRSQQIKLDQVQFLVVDEADRMLDLGFSDDLAEINQLTAQRKQTMMFS 265
Query: 211 ATLDGIVGNMAENITKDPLI----LKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRD 266
AT + +A + D +++++ ++K NI Q + + D+ HK +LLD+ LRD
Sbjct: 266 ATFAPRIQQLAMRVMHDNGASVKKIQIDTPQEKHANIKQMLYWADNAQHKRKLLDHWLRD 325
Query: 267 KRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVAT 326
+ QA+VF +T+ + D +A+ L GF A LHG L Q RNR L LR G+++ILVAT
Sbjct: 326 ASIDQAIVFASTQVECDGLANDLQQEGFSAVALHGALSQGLRNRRLMALRNGQVQILVAT 385
Query: 327 DVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIER 386
DVAARGIDVP ITHVFN+ LP EDY HRIGRTGRAGR+G AV+ +R I IE
Sbjct: 386 DVAARGIDVPTITHVFNFGLPMKAEDYTHRIGRTGRAGRDGLAVTFAEFRDRRKIFDIEG 445
Query: 387 FTKQQIPIEVINGFEPKKRI 406
+++QQ EV+ G EP +R
Sbjct: 446 YSRQQFKAEVVAGLEPTQRF 465
>gi|167561646|ref|ZP_02354562.1| putative ATP-dependent RNA helicase rhlE [Burkholderia oklahomensis
EO147]
Length = 395
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 175/402 (43%), Positives = 247/402 (61%), Gaps = 23/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ ++GYT+PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ ++T R R L+LTPTRELA QV + Y
Sbjct: 61 QR---------------------LHTFYAENRGARRAVRALILTPTRELAAQVEESVRAY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+K +++ + GG+ Q+ L R +I++ATPGRL+DHM I+ S L ILVLDE
Sbjct: 100 SKYVK-LRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + ++A+++ P +++V
Sbjct: 159 ADRMLDMGFIHDIKRVLAKLPKKRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTA 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I VD K LL +L+R+ Q +VFT TK A+ +A++L G A +H
Sbjct: 219 ETVAQKIHPVDRD-RKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 278 GNKSQSARTRALAEFKSSTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG NG AVSLV E+ ++ IER K++I EVI GFEP
Sbjct: 338 GRAGANGEAVSLVCVDEKQLLRDIERLIKREISQEVIAGFEP 379
>gi|443478716|ref|ZP_21068435.1| DEAD/DEAH box helicase domain protein [Pseudanabaena biceps PCC
7429]
gi|443015958|gb|ELS30726.1| DEAD/DEAH box helicase domain protein [Pseudanabaena biceps PCC
7429]
Length = 456
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 175/410 (42%), Positives = 245/410 (59%), Gaps = 34/410 (8%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F ++GL +L+++A+ GYT+PT +Q QAIP +SGRDL+ +QTG+GKTA F LP LH
Sbjct: 3 GFLALGLSDLIVRAVAARGYTQPTPIQSQAIPVVLSGRDLLAGAQTGTGKTAGFTLPILH 62
Query: 62 KFA------SSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTA 115
+ SS KIP+ R L+LTPTRELA QV
Sbjct: 63 LLSNKSVKRSSNGKIPI--------------------------RALILTPTRELAAQVEE 96
Query: 116 ATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQI 175
+ YG ++ + +++I GG+ Q+ L EIL+ATPGRL+DH+ G+++ S +++
Sbjct: 97 SVRMYGRHLP-LTSMAIYGGVNINPQINRLRGGVEILVATPGRLLDHVQQGRLDLSQVEV 155
Query: 176 LVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNS 235
LVLDEADRMLDMGFI DI+KI+ P RQ +LFSAT + A + P++++V S
Sbjct: 156 LVLDEADRMLDMGFIRDIKKILALLPKQRQNLLFSATFSHDIKTFASTLLDRPVMVEVAS 215
Query: 236 IEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFL 295
+TQ I VD K LL +L++ Q +VFT TK AD + +L+ +
Sbjct: 216 QNATADLVTQRIFPVDRD-RKRELLTHLIQTNNWYQVLVFTRTKHGADRLVKQLHQDDIV 274
Query: 296 AAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVH 355
A +HG+ Q AR R L + G +++LVATD+AARG+D+ + V NY+LP PEDYVH
Sbjct: 275 AMAIHGNKSQAARTRALGKFKDGSLQVLVATDIAARGLDISELPQVVNYELPNVPEDYVH 334
Query: 356 RIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
RIGRTGRAG +G A+SLV ER + IE+ K+ +P E+I GFEP R
Sbjct: 335 RIGRTGRAGSSGEAISLVCVDERKFLADIEKLIKRSLPHEIIEGFEPDPR 384
>gi|407452329|ref|YP_006724054.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
RA-CH-1]
gi|403313313|gb|AFR36154.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
RA-CH-1]
Length = 371
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 168/387 (43%), Positives = 238/387 (61%), Gaps = 27/387 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
MNF + L +LKA+ GYT PT +QE+AIP + GRDLI +QTG+GKTAAF +P L
Sbjct: 1 MNFTQLSLSSPILKAISDAGYTTPTAIQEKAIPTILEGRDLIGCAQTGTGKTAAFSIPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + P K++ R L+LTPTRELA+Q+ E+Y
Sbjct: 61 QILSET----PKKGKSI---------------------RALILTPTRELAIQIQENIEQY 95
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
++ IK +SI GG+P +Q + L++ +IL+ATPGRL+D M G ++ S ++ILVLDE
Sbjct: 96 SKFLN-IKHLSIFGGVPQGKQERALNQGVDILIATPGRLLDLMQQGLLSLSQIEILVLDE 154
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF+ND++KI+ P RQT+ FSAT+ + AE I +P + V +
Sbjct: 155 ADRMLDMGFVNDVKKILTKVPKKRQTLFFSATMPNSIRQFAETILDNPAEVTVTPVSSTA 214
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
K I QS+ FV+ K LL +L+D ++++FT TK AD + +L +G AA +H
Sbjct: 215 KTIEQSVYFVEKN-DKTNLLINILKDTSELRSLIFTRTKHGADRLVKQLGRTGIFAAAIH 273
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ QNAR + L++ + RI +L+ATD+AARGID+ + V NY+LP PE YVHRIGRT
Sbjct: 274 GNKSQNARQKALKDFKDNRISVLIATDIAARGIDIDELPQVINYELPNVPETYVHRIGRT 333
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERF 387
GRAG +G A+S ER ++K I+R
Sbjct: 334 GRAGTSGNAISFCGAEERKDLKNIQRL 360
>gi|388567820|ref|ZP_10154250.1| putative ATP-dependent RNA helicase rhlE-like protein
[Hydrogenophaga sp. PBC]
gi|388265149|gb|EIK90709.1| putative ATP-dependent RNA helicase rhlE-like protein
[Hydrogenophaga sp. PBC]
Length = 606
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 180/427 (42%), Positives = 249/427 (58%), Gaps = 35/427 (8%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGR------DLIVSSQTGSGKTAAFM 56
F ++GL ++ A+ +GYT+PT VQ + +P AI DL+VSSQTGSGKTAAF+
Sbjct: 30 FAALGLAPELVSAVADLGYTQPTAVQAKVMPLAIKAEGAERYADLMVSSQTGSGKTAAFL 89
Query: 57 LPALHKF-------------------ASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ 97
LP LH A + + K + N + H FK A
Sbjct: 90 LPVLHTLIEQQTAREAAERAERERLVAEATARGEAAPKAPKRKNPLLPRH-----FKAAT 144
Query: 98 PRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPG 157
P LVL PTRELA QV + + ++ S++GGMPY Q+ L +N ++++ATPG
Sbjct: 145 PGALVLCPTRELAQQVAHDAIDLVRHCRGLRIASVVGGMPYQLQIAKL-QNADLVVATPG 203
Query: 158 RLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIV 217
RL+D S ++ +Q LV+DEADRMLD+GF +D+ +I T RQTM+FSAT +
Sbjct: 204 RLLDLQRSMQLKLDQVQFLVVDEADRMLDLGFADDLAEINALTAQRRQTMMFSATFAPRI 263
Query: 218 GNMAENITKD----PLILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAV 273
+A + D ++++S +++ NI Q + + D HK +LLD+ LRD + QA+
Sbjct: 264 QQLAMRVMHDNGKHVQKVQIDSPQEQHANIKQVLFWADHADHKRKLLDHWLRDASINQAI 323
Query: 274 VFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGI 333
VF +T+ + D +A L +GF A LHG L Q RNR L LR G+++ILVATDVAARGI
Sbjct: 324 VFASTQIECDGLATELQQAGFAAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGI 383
Query: 334 DVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIP 393
DVP ITHVFN+ LP EDY HRIGRTGRAGR+G AV+ +R I IE +T+Q+
Sbjct: 384 DVPTITHVFNFGLPMKAEDYTHRIGRTGRAGRDGLAVTFAEFRDRRRISDIEAYTQQRFK 443
Query: 394 IEVINGF 400
EV+ G
Sbjct: 444 AEVVPGL 450
>gi|197337698|ref|YP_002157744.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
gi|197314950|gb|ACH64399.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
Length = 496
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 173/406 (42%), Positives = 245/406 (60%), Gaps = 26/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S+GL +LKA+ + GY+ P+ +Q QAIPA I G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MGFTSLGLSAPILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ ++ K+ NQ R LVLTPTRELA QV + E+Y
Sbjct: 61 ERLSNGP------KRKFNQV------------------RALVLTPTRELAAQVHESVEKY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
+ + + + GG+ QMQ L R ++L+ATPGRL+D N I F L+ILVLDE
Sbjct: 97 SKNLP-LTSDVVFGGVKVNPQMQRLRRGVDVLVATPGRLLDLANQNAIKFDQLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI+KI+ P RQ +LFSAT + +A+ + KDP+ + V
Sbjct: 156 ADRMLDMGFIHDIKKILAKLPKNRQNLLFSATFSDEIRQLAKGLVKDPVEISVAKRNTTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + QS+ +V D K ++L L++D Q +VF+ TK A+ +A L G AA +H
Sbjct: 216 ETVEQSV-YVMDKGRKPKVLTKLIKDNDWKQVLVFSKTKHGANRLAKTLEEKGVSAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + L N + G++++LVATD+AARG+D+ + V N DLPK PEDYVHRIGRT
Sbjct: 275 GNKSQGARTKALANFKSGQVRVLVATDIAARGLDIEQLPQVINVDLPKVPEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
GRAG G A+S V+ E + IER ++ +P V+ GFEP ++
Sbjct: 335 GRAGATGKAISFVSEDEAKELFAIERLIQKVLPRHVLEGFEPVNKV 380
>gi|124383654|ref|YP_001028341.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
gi|124291674|gb|ABN00943.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
Length = 488
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 176/405 (43%), Positives = 247/405 (60%), Gaps = 26/405 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ ++GYT+PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + Y R R L+LTPTRELA QV + Y
Sbjct: 61 QRL------------------HAFYAENRSARRAV---RALILTPTRELAAQVEESVRAY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+K +++ + GG+ Q+ L R +I++ATPGRL+DHM I+ S L ILVLDE
Sbjct: 100 SKYVK-LRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++++ P RQ +LFSAT + ++A+++ P +++V
Sbjct: 159 ADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTA 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q I VD K LL +L+R+ Q +VFT TK A+ +A++L G A +H
Sbjct: 219 ETIAQKIHPVDRD-RKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 278 GNKSQSARTRALSEFKSSTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 337
Query: 361 GRAGR---NGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GR GR NG AVSLV E+ ++ IER K++IP +VI GFEP
Sbjct: 338 GRTGRAGANGEAVSLVCVDEKQLLRDIERLIKREIPQQVIPGFEP 382
>gi|193214029|ref|YP_001995228.1| DEAD/DEAH box helicase [Chloroherpeton thalassium ATCC 35110]
gi|193087506|gb|ACF12781.1| DEAD/DEAH box helicase domain protein [Chloroherpeton thalassium
ATCC 35110]
Length = 431
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 175/400 (43%), Positives = 246/400 (61%), Gaps = 26/400 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+NF+SI L+ +L+AL ++GY PT +Q AIP AI G+D++ ++QTG+GKTAAF LP L
Sbjct: 4 INFESISLNPSILRALKELGYETPTAIQAAAIPEAILGKDILATAQTGTGKTAAFALPIL 63
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ +++ + PR L+LTPTRELALQ+ Y
Sbjct: 64 HRLGENRS------------------------YDIRAPRALILTPTRELALQIDNNIRLY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y++ ++ I+GG+P Q+++L RNP+IL+ATPGRLID + G I +Q VLDE
Sbjct: 100 ARYLR-LRTGVIMGGVPAHPQIKMLRRNPDILVATPGRLIDLFDQGFIGLDQIQTFVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI +I P QT+LFSATL + +A + ++P+ ++V +
Sbjct: 159 ADRMLDMGFIDDIRRIESLQPRDHQTLLFSATLSPEIEALASRMLREPVRIEVAPVSSVA 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NITQ +LFV+ +K LL L ++ + +A+VFT TK+ A+ +A++L G A +H
Sbjct: 219 DNITQKVLFVEQN-NKRELLHNLFKENDIKRALVFTRTKQRANHVAEQLIRLGISADAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
Q AR R L RG+I +LVATD+AARGIDV I+HV NY+LP PE+YVHRIGRT
Sbjct: 278 SSKSQRARQRALMLFDRGKINVLVATDIAARGIDVDGISHVINYELPDDPENYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGF 400
RAG +G A+S + E +K IE+ TK I I N F
Sbjct: 338 ARAGASGTALSFCDADEVRMLKGIEKLTKSSIAICDNNPF 377
>gi|134095351|ref|YP_001100426.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
gi|133739254|emb|CAL62303.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
Length = 449
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 178/417 (42%), Positives = 248/417 (59%), Gaps = 21/417 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL + +++A+ + GY+ PT +Q QAIPA ++G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFTDLGLADGIVRAVTEHGYSIPTPIQAQAIPAVLAGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ A+S H +P R LVLTPTRELA QV + Y
Sbjct: 61 HRLATSGTP-----------------HASASAQRPI--RALVLTPTRELAAQVEESVRTY 101
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+ A+ I GG+ Q++LL +IL+ATPGRL+DHM G +N S ++ILVLDE
Sbjct: 102 SKYLNLNSAV-IFGGVGINPQIKLLKHGVDILVATPGRLLDHMQQGTVNLSKVEILVLDE 160
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI +++ P RQ +LFSAT + +A+ + P +++V
Sbjct: 161 ADRMLDMGFIKDIRRVLAVLPKNRQNLLFSATFSNEIKALADGLLNSPAMIEVARRNSTV 220
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q I VD K+ +L +L++ Q +VFT TK A+ + ++L G +H
Sbjct: 221 EVIEQKIHPVDRD-KKHPMLAHLIKTNNWSQVLVFTRTKHGANKLVEQLEKDGISGMAIH 279
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + G +++LVATD+AARGID+ + HV NYDLP PEDYVHRIGRT
Sbjct: 280 GNKSQSARTRALSEFKDGSLQVLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRT 339
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRYRFNN 417
GRAG G AVSLV E +K IE+ K+++P EVI GFEP + + R N+
Sbjct: 340 GRAGATGEAVSLVCVDELDMLKDIEKLIKRKLPSEVIVGFEPDLNAKPQPIQRRSND 396
>gi|397169678|ref|ZP_10493110.1| DEAD/DEAH box helicase domain-containing protein [Alishewanella
aestuarii B11]
gi|396088982|gb|EJI86560.1| DEAD/DEAH box helicase domain-containing protein [Alishewanella
aestuarii B11]
Length = 424
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 168/402 (41%), Positives = 248/402 (61%), Gaps = 27/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+++ L E +L+ L + GY T VQ+QAIP +SG+D++ +QTG+GKTAAF LP L
Sbjct: 1 MQFQTLALAEPILRVLAEQGYQAATPVQQQAIPPILSGKDVLAGAQTGTGKTAAFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N K+ +PAQ R+LVLTPTRELA QV + + Y
Sbjct: 61 QQLL---------------NAPKV--------LQPAQVRVLVLTPTRELAQQVFESVQTY 97
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+ ++ GG+ Q + +IL+ATPGRLIDH++ I+ S L++LVLDE
Sbjct: 98 SRYLS-VRCAVFYGGVSIRPQYDEAEQGLDILVATPGRLIDHLHQQTIDLSQLEVLVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI++I+ P RQT+LFSAT + +A+ + P++++V +
Sbjct: 157 ADRMLDMGFIVDIKRIMAKLPAQRQTLLFSATYSKEIKILADELLNKPVLIEVATANATA 216
Query: 241 KNITQSILFVDDILHKNR-LLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+TQ + VD H+ R L+ +++ + Q ++F TK AD +A +L G A +
Sbjct: 217 DRVTQQVYLVDR--HRKRELISHMIGMQNWPQVLIFVRTKHGADRLAKQLQKDGLTTAAI 274
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD Q AR RTL+ ++G+++ILVATD+AARG+D+ + +V NYDLP+ EDYVHRIGR
Sbjct: 275 HGDKAQGARQRTLDEFKQGKVRILVATDIAARGLDISELPYVVNYDLPQVAEDYVHRIGR 334
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
TGRAG +G AV+LV E ++ IE+ T+Q +P +++ G+E
Sbjct: 335 TGRAGLSGVAVTLVGPDELGALQDIEKLTQQVLPTQIVPGYE 376
>gi|257483568|ref|ZP_05637609.1| ATP-dependent RNA helicase RhlE, putative, partial [Pseudomonas
syringae pv. tabaci str. ATCC 11528]
Length = 514
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N +P + R P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERLFP--NGVPDKSQ----------------RHGPRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KLYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++I+VATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|121595647|ref|YP_987543.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
JS42]
gi|120607727|gb|ABM43467.1| DEAD/DEAH box helicase domain protein [Acidovorax sp. JS42]
Length = 625
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 188/440 (42%), Positives = 256/440 (58%), Gaps = 47/440 (10%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAI-SGRD-----LIVSSQTGSGKTAAF 55
F +GL +++A+ +GYT+PT VQ +AIP A+ SG D L+VSSQTGSGKTAAF
Sbjct: 38 GFIELGLAPELVQAVADLGYTEPTQVQTRAIPLAMGSGDDASFIDLMVSSQTGSGKTAAF 97
Query: 56 MLPALHKFASSKN-------------------------KIPVMKKNLNQNNNKIYTHKER 90
+LP LH + K P +KN Q N
Sbjct: 98 LLPVLHTLIRQQAEAEVAERAAFERAAAEAAARGEAPPKRP-KRKNPTQARN-------- 148
Query: 91 LRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPE 150
FK A P LVL PTRELA QV + K ++ +++GGMPY Q+ L +N
Sbjct: 149 --FKAATPGALVLCPTRELAQQVAHDAIDLVKHCKGLRIANVVGGMPYQLQIAKL-QNAN 205
Query: 151 ILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFS 210
+++ATPGRL+D S +I +Q LV+DEADRMLD+GF +D+ +I T +QTM+FS
Sbjct: 206 LVVATPGRLLDLQRSQQIKLDQVQFLVVDEADRMLDLGFSDDLAEINQLTAQRKQTMMFS 265
Query: 211 ATLDGIVGNMAENITKDPLI----LKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRD 266
AT + +A + D +++++ ++K NI Q + + D+ HK +LLD+ LRD
Sbjct: 266 ATFAPRIQQLAMRVMHDNGASVKKIQIDTPQEKHANIKQMLYWADNAQHKRKLLDHWLRD 325
Query: 267 KRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVAT 326
+ QA+VF +T+ + D +A+ L GF A LHG L Q RNR L LR G+++ILVAT
Sbjct: 326 ASIDQAIVFASTQVECDGLANDLQQEGFSAVALHGALSQGLRNRRLMALRNGQVQILVAT 385
Query: 327 DVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIER 386
DVAARGIDVP ITHVFN+ LP EDY HRIGRTGRAGR+G AV+ +R I IE
Sbjct: 386 DVAARGIDVPTITHVFNFGLPMKAEDYTHRIGRTGRAGRDGLAVTFAEFRDRRKIFDIEG 445
Query: 387 FTKQQIPIEVINGFEPKKRI 406
+++QQ EV+ G EP +R
Sbjct: 446 YSRQQFKAEVVAGLEPTQRF 465
>gi|149179168|ref|ZP_01857736.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797]
gi|148841986|gb|EDL56381.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797]
Length = 445
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 171/393 (43%), Positives = 242/393 (61%), Gaps = 25/393 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F+ + L V KALV+ Y PT +Q Q IPAA+ GRD++ +QTG+GKTAA LP L+
Sbjct: 3 TFQELKLIAPVQKALVEENYKIPTPIQAQTIPAALEGRDVLGCAQTGTGKTAALALPILN 62
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ L +N+ K H P LVL PTRELA+Q+ + + YG
Sbjct: 63 Q--------------LGKNSRKSIPH---------HPLALVLAPTRELAIQIGDSFDAYG 99
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
++K ++++ I GG+ Q++ L R IL+ATPGRL+D MN G I + L++ VLDEA
Sbjct: 100 RHLK-LRSVLIYGGVGQGNQVKALKRGAHILVATPGRLLDLMNQGHIKLNQLEVFVLDEA 158
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGF+ D+++I+ P RQ++ FSATL + +A ++ P+ + V +
Sbjct: 159 DRMLDMGFLPDLKRIITQLPTQRQSLFFSATLAPKITELAHSLLSKPVTVNVTPKTTSVE 218
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
I Q ++FV+ K LL +L V +A+VFT TKR A+ ++ RL SGF A +HG
Sbjct: 219 KIQQQLMFVERNF-KQPLLQKILGGDEVERALVFTKTKRTANTLSQRLVRSGFKATAIHG 277
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ Q AR + LE RR ++++LVATDVAARGID+ ITHV N+DLP PE YVHRIGRTG
Sbjct: 278 NKSQGARQQALEAFRRKQVQVLVATDVAARGIDIDGITHVINFDLPVEPEAYVHRIGRTG 337
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
RAG NG A+S + +ER ++ IER Q++P+
Sbjct: 338 RAGANGIAISFCSESERKELRSIERLIGQKVPV 370
>gi|238753347|ref|ZP_04614710.1| ATP-dependent RNA helicase rhlE [Yersinia ruckeri ATCC 29473]
gi|238708300|gb|EEQ00655.1| ATP-dependent RNA helicase rhlE [Yersinia ruckeri ATCC 29473]
Length = 453
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 178/411 (43%), Positives = 250/411 (60%), Gaps = 30/411 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY PT +Q QAIP + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNADILRAIEEQGYLVPTPIQRQAIPVVLQGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
LN+N I + P R L+LTPTRELA Q+ E+Y
Sbjct: 61 QI--------------LNENAQPIKGRR------PV--RALILTPTRELAAQIGENVEQY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+K ++++ + GG+ QM L +IL+ATPGRL+D + ++ S ++ILVLDE
Sbjct: 99 SKYLK-LRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI +++ P RQ +LFSAT + +A + +P ++V
Sbjct: 158 ADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDEIKGLASKLLNNPASVEVARRNTAS 217
Query: 241 KNITQSILFVDDILHKNR---LLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+ ITQS+ FVD KNR LL ++ + Q +VFT TK A+ +A++LN G AA
Sbjct: 218 EQITQSVHFVD----KNRKRELLSQMIGSQNWQQVLVFTRTKHGANHLAEQLNKDGITAA 273
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
+HG+ Q AR R L + + G+I++LVATD+AARG+D+ + HV NY+LP PEDYVHRI
Sbjct: 274 AIHGNKSQGARTRALADFKDGKIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRI 333
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
GRTGRA R G A+SLV E ++ IER K++IP I G+EP I+
Sbjct: 334 GRTGRAERTGEAISLVCIDEHKLLRDIERLLKREIPRFAIEGYEPDPSIKA 384
>gi|59713334|ref|YP_206109.1| RNA helicase [Vibrio fischeri ES114]
gi|59481582|gb|AAW87221.1| RNA helicase [Vibrio fischeri ES114]
Length = 500
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 173/406 (42%), Positives = 245/406 (60%), Gaps = 26/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S+GL +LKA+ + GY+ P+ +Q QAIPA I G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MGFTSLGLSAPILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ ++ K+ NQ R LVLTPTRELA QV + E+Y
Sbjct: 61 ERLSNGP------KRKFNQV------------------RALVLTPTRELAAQVHESVEKY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
+ + + + GG+ QMQ L R ++L+ATPGRL+D N I F L+ILVLDE
Sbjct: 97 SKNLP-LTSDVVFGGVKVNPQMQRLRRGVDVLVATPGRLLDLANQNAIKFDQLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI+KI+ P RQ +LFSAT + +A+ + KDP+ + V
Sbjct: 156 ADRMLDMGFIHDIKKILAKLPKNRQNLLFSATFSDEIRQLAKGLVKDPVEISVAKRNTTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + QS+ +V D K ++L L++D Q +VF+ TK A+ +A L G AA +H
Sbjct: 216 ETVEQSV-YVMDKGRKPKVLTKLIKDNDWKQVLVFSKTKHGANRLAKTLEEKGVSAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + L N + G++++LVATD+AARG+D+ + V N DLPK PEDYVHRIGRT
Sbjct: 275 GNKSQGARTKALANFKSGQVRVLVATDIAARGLDIEQLPQVINVDLPKVPEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
GRAG G A+S V+ E + IER ++ +P V+ GFEP ++
Sbjct: 335 GRAGATGKAISFVSEDEAKELFAIERLIQKVLPRHVLEGFEPVNKV 380
>gi|294139294|ref|YP_003555272.1| DEAD/DEAH box helicase [Shewanella violacea DSS12]
gi|293325763|dbj|BAJ00494.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
DSS12]
Length = 478
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 173/402 (43%), Positives = 244/402 (60%), Gaps = 26/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +LKA+ GY P+ +Q QAIPA + G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MSFTSLGLSAPILKAVASKGYETPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
L++ N R + + R LVLTPTRELA QV + E Y
Sbjct: 61 EL--------------LSRGN----------RAQAKKVRALVLTPTRELAAQVAESVETY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ +K+ I GG+ Q+ L + +IL+ATPGRL+D N G +NF+ L++L+LDE
Sbjct: 97 GKYLP-LKSAVIFGGVGIGPQISKLGKGVDILVATPGRLLDLYNQGAVNFNQLEVLILDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI+KI+ P RQ ++FSAT + +A+ + +P+ + V
Sbjct: 156 ADRMLDMGFIHDIKKILRVLPAKRQNLMFSATFSDDIRKLAKGLVNNPVEISVTPRNATA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
K++ Q I VD K L +L++ Q +VF+ TK A+ IA L + AA +H
Sbjct: 216 KSVEQYIYMVDQ-KQKTAALIHLIKQNDWKQVLVFSRTKHGANRIAKNLEANDLTAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + L N + G +++LVATD+AARGID+ + +V N+DLP PEDYVHRIGRT
Sbjct: 275 GNKSQGARTKALANFKNGAVRVLVATDIAARGIDIDQLPNVVNFDLPNVPEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG +G AVSLV+ E ++ IER KQ IP + + GF P
Sbjct: 335 GRAGASGQAVSLVSGDESKLLRDIERLIKQNIPRKEVEGFVP 376
>gi|416023977|ref|ZP_11568156.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
glycinea str. race 4]
gi|320330891|gb|EFW86865.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 625
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N +P + R P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERLFP--NGVPDKSQ----------------RHGPRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KLYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSNDITSLASKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++I+VATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|416019175|ref|ZP_11566068.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
glycinea str. B076]
gi|320322003|gb|EFW78099.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
glycinea str. B076]
Length = 625
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N +P + R P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERLFP--NGVPDKSQ----------------RHGPRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KLYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSNDITSLASKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++I+VATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|399001288|ref|ZP_10704004.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM18]
gi|398127935|gb|EJM17335.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM18]
Length = 618
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N + +K H P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERLFP------------NGHPDKSQRHG------PRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+Y + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KVYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAASHKRSLLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|152992886|ref|YP_001358607.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
gi|151424747|dbj|BAF72250.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
Length = 457
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 189/459 (41%), Positives = 268/459 (58%), Gaps = 40/459 (8%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F ++GL+E +LKA+ GYT PT +Q+QAIP I G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MSFTNLGLNESLLKAIKDQGYTSPTPIQKQAIPVVIEGKDVLAAAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + + P M K Q R+LVLTPTRELA QV + + Y
Sbjct: 61 ERLSETH---PKMGKK--------------------QIRVLVLTPTRELAAQVAESIKTY 97
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G YMK + + GG+ Q+ + R +I++ATPGRL+D I+FS L+ LVLDE
Sbjct: 98 GKYMKYTSTV-VYGGVGINPQLATIRRGVDIVIATPGRLLDIAGQQGIDFSALETLVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI+K++ P RQT+LFSAT + +A + K+P++++V
Sbjct: 157 ADRMLDMGFIHDIKKLMKMMPKERQTLLFSATFSLEIKKLASGLLKNPVLVEVARENTTA 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
I+Q + FVD K LL L++ K Q +VFT TK A+ + +L +G AA +H
Sbjct: 217 DQISQVVHFVDKS-RKRELLSQLIKTKDWRQVLVFTRTKHGANRLTKQLEEAGISAAAIH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + L + + I++LVATD+AARGID+ + HV NY+LP PEDYVHRIGRT
Sbjct: 276 GNKSQGARTKALASFKANEIRVLVATDIAARGIDIDQLPHVVNYELPNVPEDYVHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT--------YYSR 412
GRAG++G AVSLV E + IE+F K +I I F P I+ +
Sbjct: 336 GRAGQSGEAVSLVCVDEHKLLFDIEKFIKSEIKKVHIEAFTPDPNIKAEPIQNGRGGGQK 395
Query: 413 YRFNNNNWKTHNINKSNITKRFYRQIKKTSI-SASSKNS 450
N+ ++ N N SN R+ K++S A++KNS
Sbjct: 396 RGGGNSRNRSRNTNTSN------REHKESSAKKANTKNS 428
>gi|423687487|ref|ZP_17662290.1| ATP-dependent RNA helicase RhlE [Vibrio fischeri SR5]
gi|371493270|gb|EHN68873.1| ATP-dependent RNA helicase RhlE [Vibrio fischeri SR5]
Length = 500
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 173/402 (43%), Positives = 243/402 (60%), Gaps = 26/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S+GL +LKA+ + GY+ P+ +Q QAIPA I G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MGFTSLGLSAPILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ ++ K+ NQ R LVLTPTRELA QV + E+Y
Sbjct: 61 ERLSNGP------KRKFNQV------------------RALVLTPTRELAAQVHESVEKY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
+ + + + GG+ QMQ L R ++L+ATPGRL+D N I F L+ILVLDE
Sbjct: 97 SKNLP-LTSDVVFGGVKVNPQMQRLRRGVDVLVATPGRLLDLANQNAIKFDQLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI+KI+ P RQ +LFSAT + +A+ + KDP+ + V
Sbjct: 156 ADRMLDMGFIHDIKKILAKLPKNRQNLLFSATFSDEIRQLAKGLVKDPVEISVAKRNTTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + QS+ +V D K ++L L++D Q +VF+ TK A+ +A L G AA +H
Sbjct: 216 ETVEQSV-YVMDKGRKPKVLTKLIKDNDWKQVLVFSKTKHGANRLAKTLEEKGVSAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + L N + G++++LVATD+AARG+D+ + V N DLPK PEDYVHRIGRT
Sbjct: 275 GNKSQGARTKALANFKSGQVRVLVATDIAARGLDIEQLPQVINVDLPKVPEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G A+S V+ E + IER ++ +P V+ GFEP
Sbjct: 335 GRAGATGKAISFVSEDEAKELFAIERLIQKVLPRHVLEGFEP 376
>gi|290474026|ref|YP_003466900.1| ATP-dependent RNA helicase with P-loop hydrolase domain
[Xenorhabdus bovienii SS-2004]
gi|289173333|emb|CBJ80110.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
[Xenorhabdus bovienii SS-2004]
Length = 459
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 171/408 (41%), Positives = 250/408 (61%), Gaps = 24/408 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
MNF+S+GL +L+A+ + GY +PT +Q+QAIP +SG+DL+ S+QTG+GKTA F LP L
Sbjct: 1 MNFESLGLKADILRAVEEQGYVEPTPIQQQAIPVVLSGKDLLASAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ S P K +P R L+LTPTRELA QV Y
Sbjct: 61 QLLSES----PAQAKG----------------RRPV--RALILTPTRELAAQVGENVCNY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y++ ++++ + GG+ QM L +IL+ATPGRL+D + ++ SH++IL+LDE
Sbjct: 99 SKYLR-LRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVDLSHVEILILDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI +++ P RQ +LFSAT + ++A + +DP+ ++V
Sbjct: 158 ADRMLDMGFIHDIRRVLSKLPAKRQNLLFSATFSDDIKSLANKLLRDPVSIEVARRNSAS 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q++ FVD K LL Y++ ++ Q +VFT TK A+ +A++L+ G AA +H
Sbjct: 218 EQIDQAVHFVDK-KRKGELLSYMIGNQNWQQVLVFTRTKHGANRLAEQLSQDGVTAAAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + GRI+ LVATD+AARG+D+ + HV N++LP EDYVHRIGRT
Sbjct: 277 GNKSQGARTRALADFKSGRIRALVATDIAARGLDIDQLPHVVNFELPNVAEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
GRA G A+SLV E + IER K++IP I+G++P I+
Sbjct: 337 GRAEATGQAISLVCVDEHKLLHDIERLLKREIPRIAISGYDPDPSIKA 384
>gi|422580925|ref|ZP_16656069.1| ATP-dependent RNA helicase RhlE, partial [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330865776|gb|EGH00485.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv. aesculi
str. 0893_23]
Length = 500
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N +P + R P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERLFP--NGVPDKSQ----------------RHGPRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KLYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++I+VATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|289625029|ref|ZP_06457983.1| ATP-dependent RNA helicase RhlE, putative, partial [Pseudomonas
syringae pv. aesculi str. NCPPB 3681]
Length = 516
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N +P + R P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERLFP--NGVPDKSQ----------------RHGPRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KLYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++I+VATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|330826029|ref|YP_004389332.1| DEAD/DEAH box helicase [Alicycliphilus denitrificans K601]
gi|329311401|gb|AEB85816.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
K601]
Length = 568
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 176/404 (43%), Positives = 248/404 (61%), Gaps = 22/404 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+ + L +L+A+ + GY PT +Q QAIPA ++G DL+ +QTG+GKTAAF LP L
Sbjct: 1 MTFEELKLAPALLQAVQEQGYQNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ A + + P RF R LVLTPTRELA QV + Y
Sbjct: 61 HRLA--QGQAPTS------------------RFGGRGVRALVLTPTRELAAQVEESVRAY 100
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ IK+ I GG+ Q++ + R ++L+ATPGRL+D G ++ S ++ILVLDE
Sbjct: 101 GKHLD-IKSTVIFGGVGMNPQIERIKRGVDVLVATPGRLLDLQQQGFMDLSQVEILVLDE 159
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+D++K++ P +Q++LFSAT + +A + DP ++V
Sbjct: 160 ADRMLDMGFIHDVKKVLALLPKAKQSLLFSATFSDEIRELAAGLLNDPQSIQVTPRNTTV 219
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I+Q I V K LL ++++ Q +VFT TK A+ +A+ L G A LH
Sbjct: 220 QRISQVIHPVGRGKKKQVLL-HIIQQHDWSQVLVFTRTKFGANNVAEYLTKHGVQAMALH 278
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR + LE + G+I+ LVATD+AARGID+ + HV NY++P PEDYVHRIGRT
Sbjct: 279 GNKSQSARTQALEGFKSGQIRALVATDIAARGIDIDDLPHVVNYEIPNVPEDYVHRIGRT 338
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRAG+ G AVSLV E + +IERFTKQ+IP++VI GF P +
Sbjct: 339 GRAGKEGQAVSLVCMDEEGFMMEIERFTKQEIPVQVIEGFGPDE 382
>gi|374703254|ref|ZP_09710124.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
S9]
Length = 622
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 176/404 (43%), Positives = 252/404 (62%), Gaps = 24/404 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPAA+ GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAVESAGYTQPTPVQQRAIPAALQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ P + Q R P QPR+LVLTPTRELA QV + +
Sbjct: 61 ERL------FPNGHPDREQ------------RHGPKQPRVLVLTPTRELAAQVH---DSF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q L++ ++L+A PGRL+D G I+ SH++ILVL
Sbjct: 100 KLYARDLKFVSACIFGGVGMNPQVQALAKGVDVLVACPGRLLDLAGQGSIDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI+D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFIHDVKKVLARLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLQASHKRALLAHLVTAGAWEQVLVFTRTKHGANRLAEYLDQRGLPAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + +++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKANKVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
RTGRAGR+G A+SLV E ++ IER TKQ+I + GF+P
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLRGIERMTKQKIADGDMMGFDP 382
>gi|404398904|ref|ZP_10990488.1| DEAD/DEAH box helicase-like protein [Pseudomonas fuscovaginae
UPB0736]
Length = 621
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 176/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E ++ A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVGAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ P + +Q R P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERL------FPNGHPDKSQ------------RHGPRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q ++R ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KLYARDLKFVSACIFGGVGMNPQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G AA
Sbjct: 220 TVERIEQRV-FRLAASHKRALLAHLITTGAWEQVLVFTRTKHGANRLAEYLDKHGLSAAA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G I+ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGEIRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER T+Q+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTRQKIADGDLVGFD 381
>gi|393760514|ref|ZP_10349324.1| ATP-dependent RNA helicase [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
gi|393161371|gb|EJC61435.1| ATP-dependent RNA helicase [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
Length = 487
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 173/424 (40%), Positives = 250/424 (58%), Gaps = 31/424 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F ++GL E +L+A+ GYT PT +Q QAIP I G DL+ ++QTG+GKTA F LP L
Sbjct: 5 ITFAALGLAEPLLRAVTDAGYTHPTPIQAQAIPKVIEGGDLLAAAQTGTGKTAGFTLPIL 64
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ + N QN KP +PR L+L PTRELA QV + Y
Sbjct: 65 HRLLN----------NPQQNR------------KPGRPRALILAPTRELAAQVEESVRLY 102
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
+ + ++++ + GG+ Q L + +IL+ATPGRL+DH+ ++ + ++ILVLDE
Sbjct: 103 SQHTR-LRSMVMFGGVNINPQFHALRKPLDILVATPGRLLDHVRQRTVDLTGVEILVLDE 161
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ PV RQT+LFSAT + +A +P + V +
Sbjct: 162 ADRMLDMGFIRDIRKIISLMPVERQTLLFSATFSDEIRELARGSLNNPDEVAVAARNTTN 221
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ ITQ ++ + HK LL +++R+ Q +VF TK A+ +A++L+ G A LH
Sbjct: 222 ELITQQVILAEQA-HKRDLLSHIIRESSWNQVLVFCRTKHGANRLAEKLSKDGMAAEALH 280
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + G++ +LVATD+AARG+D+ + +V N++LP PEDYVHRIGRT
Sbjct: 281 GNKSQAARTRALAGFKNGKVVVLVATDIAARGLDIDQLPYVVNFELPNVPEDYVHRIGRT 340
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI-------RTYYSRY 413
GRAG G A+SLV+ +E +K+IER T+ I V+ G+ P R Y+
Sbjct: 341 GRAGSEGVALSLVDRSEMRLLKQIERMTRNPIDRIVVEGWTPPSRAALAEEAKEDTYAER 400
Query: 414 RFNN 417
RFN+
Sbjct: 401 RFNS 404
>gi|395495355|ref|ZP_10426934.1| ATP-dependent RNA helicase [Pseudomonas sp. PAMC 25886]
Length = 627
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 250/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ P + +Q R P QPR+LVLTPTRELA QV + +
Sbjct: 61 ERL------FPNGHPDKSQ------------RHGPRQPRVLVLTPTRELAAQVH---DSF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KLYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + +A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSNDITALAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLPAAHKRSLLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|28872183|ref|NP_794802.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213971879|ref|ZP_03399980.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato
T1]
gi|301385283|ref|ZP_07233701.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
tomato Max13]
gi|422657386|ref|ZP_16719827.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
lachrymans str. M302278]
gi|28855437|gb|AAO58497.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213923363|gb|EEB56957.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato
T1]
gi|331015971|gb|EGH96027.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
lachrymans str. M302278]
Length = 629
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N +P + R P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERLFP--NGVPDKSQ----------------RHGPRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KLYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++I+VATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|395008955|ref|ZP_10392540.1| DNA/RNA helicase, superfamily II [Acidovorax sp. CF316]
gi|394313009|gb|EJE50099.1| DNA/RNA helicase, superfamily II [Acidovorax sp. CF316]
Length = 647
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 181/437 (41%), Positives = 253/437 (57%), Gaps = 42/437 (9%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGR-------DLIVSSQTGSGKTAA 54
F +GL +++A+ +GYT+PT VQ +AIP A+ DL+VSSQTGSGKTAA
Sbjct: 49 GFVELGLAPELVQAVADLGYTQPTSVQLKAIPLAMGAGADAKHFIDLMVSSQTGSGKTAA 108
Query: 55 FMLPALHKF----------------------ASSKNKIPVMKKNLNQNNNKIYTHKERLR 92
F+LP LH A P K + +++
Sbjct: 109 FLLPVLHTLINQQAAAEAEERAAFERAVAEAAERGEPAPKRAKRKDPTSSR--------N 160
Query: 93 FKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEIL 152
FK A P L+L PTRELA QV + + ++ +++GGMPY Q+ L +N +++
Sbjct: 161 FKAATPGALILCPTRELAQQVAHDAIDLVKHCRGLRVANVVGGMPYQLQIAKL-QNADLV 219
Query: 153 LATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSAT 212
+ATPGRL+D S +I +Q LV+DEADRMLD+GF +D+ ++ T +QTM+FSAT
Sbjct: 220 VATPGRLLDLQRSMQIKLDKVQFLVVDEADRMLDLGFSDDLAELNQLTAQRKQTMMFSAT 279
Query: 213 LDGIVGNMAENITKDP----LILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKR 268
+ +A + D + ++S ++K NI Q + + D+ HK +LLD+ LRD
Sbjct: 280 FAPRIQQLAMRVMHDGGSSVQKVTIDSPQEKHANIKQVLYWADNAQHKRKLLDHWLRDTT 339
Query: 269 VGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDV 328
+ QA+VF +T+ + D +A+ L GF A LHG L Q RNR L LR G+++ILVATDV
Sbjct: 340 INQAIVFASTQVECDGLANDLQQEGFSAVALHGALSQGLRNRRLMALRAGQVQILVATDV 399
Query: 329 AARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFT 388
AARGIDVP ITHVFN+ LP EDY HRIGRTGRAGR+G AV+ +R I IE ++
Sbjct: 400 AARGIDVPTITHVFNFGLPMKAEDYTHRIGRTGRAGRDGLAVTFAEFRDRRKIYDIEAYS 459
Query: 389 KQQIPIEVINGFEPKKR 405
+QQ EV+ G EP +R
Sbjct: 460 RQQFKSEVVPGMEPTQR 476
>gi|289647882|ref|ZP_06479225.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
aesculi str. 2250]
Length = 625
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N +P + R P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERLFP--NGVPDKSQ----------------RHGPRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KLYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++I+VATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|395796052|ref|ZP_10475351.1| ATP-dependent RNA helicase [Pseudomonas sp. Ag1]
gi|421142552|ref|ZP_15602526.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens
BBc6R8]
gi|395339690|gb|EJF71532.1| ATP-dependent RNA helicase [Pseudomonas sp. Ag1]
gi|404506225|gb|EKA20221.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens
BBc6R8]
Length = 627
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 250/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ P + +Q R P QPR+LVLTPTRELA QV + +
Sbjct: 61 ERL------FPNGHPDKSQ------------RHGPRQPRVLVLTPTRELAAQVH---DSF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KLYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + +A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSNDITALAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLPAAHKRSLLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|422594368|ref|ZP_16668659.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|330984676|gb|EGH82779.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 625
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N +P + R P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERLFP--NGVPDKSQ----------------RHGPRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KLYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++I+VATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|349699158|ref|ZP_08900787.1| RNA helicase [Gluconacetobacter europaeus LMG 18494]
Length = 445
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 171/393 (43%), Positives = 237/393 (60%), Gaps = 25/393 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F + L E +L+AL + GY PT +Q AIP + GRDL+ +QTG+GKTAAF LP L
Sbjct: 3 TFADLHLAEPLLRALDEEGYATPTPIQAGAIPYLLEGRDLLGLAQTGTGKTAAFALPILD 62
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ +E+ R P R LVL PTRELA Q+ + Y
Sbjct: 63 RL-----------------------FREKGRAHPKGARALVLAPTRELASQIGESFASYA 99
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+M+ A+ + GG+ RQ++ L R ++L+A PGRL+D M G ++ S L++LVLDEA
Sbjct: 100 RHMRFSHAV-VFGGVGQGRQIEALRRGVDVLVAAPGRLLDLMGQGHVDLSGLEVLVLDEA 158
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGF+ DI KIV A P RQT+LFSAT+ + ++A + +DP ++V
Sbjct: 159 DRMLDMGFVRDIRKIVAALPTDRQTLLFSATMPKTISDLAHGLLRDPATVQVTPPSSTVD 218
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
I Q+++FVD +K L L+ +V +AVVFT K +A+ +A L+ G A +HG
Sbjct: 219 RIRQAVMFVD-TGNKREALKLLVDSPKVERAVVFTLMKHEANKVAAFLSEHGITAEAIHG 277
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ Q AR R + R G +K+LVATD+AARGIDV +THVFNYDLP PE YVHRIGRT
Sbjct: 278 NKSQGARERAMSGFRSGNVKVLVATDIAARGIDVDDVTHVFNYDLPNVPESYVHRIGRTA 337
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
RAGR G+AVSL + +R ++ IE+ ++IP+
Sbjct: 338 RAGREGWAVSLCDAEQRAWLRDIEKNIGKKIPV 370
>gi|302063416|ref|ZP_07254957.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
tomato K40]
Length = 629
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N +P + R P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERLFP--NGVPDKSQ----------------RHGPRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KLYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++I+VATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|422300454|ref|ZP_16387971.1| ATP-dependent RNA helicase rhlE, partial [Pseudomonas avellanae
BPIC 631]
gi|407987349|gb|EKG30176.1| ATP-dependent RNA helicase rhlE, partial [Pseudomonas avellanae
BPIC 631]
Length = 614
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N +P + R P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERLFP--NGVPDKSQ----------------RHGPRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KLYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++I+VATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|302134631|ref|ZP_07260621.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
tomato NCPPB 1108]
Length = 629
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N +P + R P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERLFP--NGVPDKSQ----------------RHGPRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KLYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++I+VATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|398962713|ref|ZP_10679340.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM30]
gi|398150614|gb|EJM39198.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM30]
Length = 621
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEDAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ P + +Q R P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERL------FPNGHPDKSQ------------RHGPRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+Y + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KIYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLPASHKRALLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|422654906|ref|ZP_16717631.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|330967974|gb|EGH68234.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 629
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N +P + R P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERLFP--NGVPDKSQ----------------RHGPRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KLYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++I+VATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|456063468|ref|YP_007502438.1| DEAD/DEAH box helicase domain-containing protein [beta
proteobacterium CB]
gi|455440765|gb|AGG33703.1| DEAD/DEAH box helicase domain-containing protein [beta
proteobacterium CB]
Length = 427
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 174/402 (43%), Positives = 248/402 (61%), Gaps = 25/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F +GL E +L+A+ + GYT PT +QE++IPA + G DL+ ++QTG+GKTA F LP L
Sbjct: 1 MLFTDLGLSESILRAISEEGYTSPTPIQEKSIPAVLKGGDLLAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ +S+ K+ + Q R+L+LTPTRELA QV + Y
Sbjct: 61 QRLSSTA---------------KVGGKR--------QLRVLILTPTRELAAQVQESVVTY 97
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y +K+ I GG+ Q++ ++ +IL+ATPGRL+D M+ ++ ++++ILVLDE
Sbjct: 98 GKYTG-LKSTVIFGGVGANPQIKAIAAGLDILVATPGRLLDLMSQNCVSLANIEILVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF+ DI+KI+ A P RQ +LFSAT + +A+ + P +++V
Sbjct: 157 ADRMLDMGFLRDIKKILAALPKQRQNLLFSATFSTEIKALADGLLNSPALIEVARSNSTN 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q I VD K+ LL +L++ + Q +VFT TK A+ + +L G A +H
Sbjct: 217 EAIAQLIHPVDRN-QKHPLLAHLIKSNQWQQVLVFTRTKHGANKLVTQLEKDGITAMAIH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR + L + G+I +LVATD+AARGID+ + HV NYDLP EDYVHRIGRT
Sbjct: 276 GNKSQSARTKALAEFKDGKITVLVATDIAARGIDIDQLPHVVNYDLPNVSEDYVHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG NG AVSLV E ++ IE+ KQ++P EVI GFEP
Sbjct: 336 GRAGSNGVAVSLVCVDEHQMLRDIEKLIKQKLPQEVIAGFEP 377
>gi|409099575|ref|ZP_11219599.1| DEAD/DEAH box helicase [Pedobacter agri PB92]
Length = 433
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 173/394 (43%), Positives = 244/394 (61%), Gaps = 24/394 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M FK + L E +LKAL K GYT+PT +QEQ+IP + G+DL+ +QTG+GKTAAF +P L
Sbjct: 1 MLFKELNLIEPILKALEKEGYTQPTPIQEQSIPTILKGKDLLGCAQTGTGKTAAFAIPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ +K++N K + LVLTPTRELA+Q+ + + Y
Sbjct: 61 QL---------LHEKHINTKATK-------------NIKALVLTPTRELAIQIEESFKAY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G + ++ + I GG+ Q++ L + +IL+ATPGRL+D MN G I + +++ VLDE
Sbjct: 99 GSNLN-LRHLVIFGGVNQHSQVEALRKGVDILVATPGRLLDLMNQGFITLNTIELFVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+D++++V P RQT+ FSAT+ + +A I P ++V I
Sbjct: 158 ADRMLDMGFIHDVKRVVAKLPAKRQTLFFSATMPDEIQKLANTILSSPTKVEVTPISSTA 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I QS+ FVD K +LL +LL DK + A+VFT TK AD I L SG AA +H
Sbjct: 218 ETIVQSVYFVDKP-DKKKLLIHLLEDKNIQTALVFTRTKHGADRIVKDLGHSGIKAAAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ QNAR R L + + +I++LVATD+AARGID+ ++HVFN++LP PE YVHRIGRT
Sbjct: 277 GNKSQNARQRALTDFKDRKIRVLVATDIAARGIDIDQLSHVFNFELPNIPESYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
GRAG NG A+S + E + I++ K +PI
Sbjct: 337 GRAGANGIAISFCDAEENEYLLDIQKLIKITLPI 370
>gi|71736442|ref|YP_272752.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71556995|gb|AAZ36206.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|298160438|gb|EFI01462.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas savastanoi
pv. savastanoi NCPPB 3335]
Length = 625
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N +P + R P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERLFP--NGVPDKSQ----------------RHGPRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KLYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++I+VATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|66043725|ref|YP_233566.1| helicase [Pseudomonas syringae pv. syringae B728a]
gi|63254432|gb|AAY35528.1| Helicase, C-terminal:Type III restriction enzyme, res
subunit:DEAD/DEAH box helicase, N-terminal [Pseudomonas
syringae pv. syringae B728a]
Length = 629
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N +P + R P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERLFP--NGVPDKSQ----------------RHGPRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KLYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++I+VATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|424925392|ref|ZP_18348753.1| Superfamily II DNA and RNA helicase [Pseudomonas fluorescens R124]
gi|404306552|gb|EJZ60514.1| Superfamily II DNA and RNA helicase [Pseudomonas fluorescens R124]
Length = 622
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEDAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ P + +Q R P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERL------FPNGHPDKSQ------------RHGPRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+Y + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KIYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLPASHKRALLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|88808729|ref|ZP_01124239.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. WH 7805]
gi|88787717|gb|EAR18874.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. WH 7805]
Length = 429
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 177/404 (43%), Positives = 245/404 (60%), Gaps = 34/404 (8%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F +GL E +L+AL GYT P+ +Q QAIPA I GRD++ ++QTG+GKTA F LP L
Sbjct: 21 FSDLGLGEPLLEALQDKGYTHPSPIQAQAIPAVIDGRDVMAAAQTGTGKTAGFTLPVL-- 78
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRF-KPA---QPRMLVLTPTRELALQVTAATE 118
ERLR KPA Q R LVLTPTRELA QV
Sbjct: 79 --------------------------ERLRHGKPAGRGQIRALVLTPTRELAAQVLENVR 112
Query: 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
Y ++ +++ + GG+ Q+ L ++L+ATPGRL+D G ++F L+ LVL
Sbjct: 113 AYSSHLP-LRSDVVFGGVKANPQINRLRGGVDLLVATPGRLLDLHQQGALHFDQLECLVL 171
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI+DI +++ PV RQT+LFSAT + +A + DP+ L+V +
Sbjct: 172 DEADRMLDMGFIHDIRRLIRLMPVKRQTLLFSATFSAPIRKLASGLLHDPVHLQVTPENQ 231
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+++ Q ++ D+ K+ LL +L+R Q +VF+ TK A+ +ADRL+ G AA
Sbjct: 232 TARSVEQ-VVHPCDMARKSDLLSHLIRAGDWRQVLVFSRTKHGANRVADRLSKEGLSAAA 290
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ Q AR R L+ ++G I++LVATD+AARGID+ + HV N DLP EDYVHRIG
Sbjct: 291 IHGNKSQGARTRALQGFKQGNIRVLVATDIAARGIDIQQLPHVVNLDLPNVAEDYVHRIG 350
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
RTGRAG G AVSLV E + +K IER T +++ + ++GFEP
Sbjct: 351 RTGRAGETGHAVSLVAAEEALLLKAIERLTGEELTRQTVDGFEP 394
>gi|398900598|ref|ZP_10649626.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM50]
gi|398180998|gb|EJM68572.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM50]
Length = 621
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N + +K H P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERLFP------------NGHPDKSQRHG------PRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+Y + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KVYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPSKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAASHKRSLLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGNLMGFD 381
>gi|313205949|ref|YP_004045126.1| dead/deah box helicase domain-containing protein [Riemerella
anatipestifer ATCC 11845 = DSM 15868]
gi|383485266|ref|YP_005394178.1| dead/deah box helicase domain protein [Riemerella anatipestifer
ATCC 11845 = DSM 15868]
gi|386322068|ref|YP_006018230.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
RA-GD]
gi|416111966|ref|ZP_11592990.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer
RA-YM]
gi|312445265|gb|ADQ81620.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer
ATCC 11845 = DSM 15868]
gi|315022262|gb|EFT35290.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer
RA-YM]
gi|325336611|gb|ADZ12885.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
RA-GD]
gi|380459951|gb|AFD55635.1| dead/deah box helicase domain protein [Riemerella anatipestifer
ATCC 11845 = DSM 15868]
Length = 371
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 167/387 (43%), Positives = 238/387 (61%), Gaps = 27/387 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
MNF + L +LKA+ GYT PT +QE+AIP + GRDLI +QTG+GKTAAF +P L
Sbjct: 1 MNFTQLSLSSPILKAISDAGYTTPTAIQEKAIPTILEGRDLIGCAQTGTGKTAAFSIPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + P K++ R L+LTPTRELA+Q+ E+Y
Sbjct: 61 QILSET----PKKGKSV---------------------RALILTPTRELAIQIQENIEQY 95
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
++ IK +SI GG+P +Q + L++ +IL+ATPGRL+D M G ++ S ++ILVLDE
Sbjct: 96 SKFLN-IKHLSIFGGVPQGKQERALNQGVDILIATPGRLLDLMQQGLLSLSQIEILVLDE 154
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF+ND++KI+ P RQT+ FSAT+ + AE I +P + V +
Sbjct: 155 ADRMLDMGFVNDVKKILTKVPKKRQTLFFSATMPNSIRQFAETILDNPAEVTVTPVSSTA 214
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
K I QS+ FV+ K LL +L+D ++++FT TK AD + +L +G AA +H
Sbjct: 215 KTIEQSVYFVEKN-DKTNLLINILKDTSELRSLIFTRTKHGADRLVKQLGRTGIFAAAIH 273
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ QNAR + L++ + RI +L+ATD+AARGID+ + V NY+LP PE YVHRIGRT
Sbjct: 274 GNKSQNARQKALKDFKDNRISVLIATDIAARGIDIDELPQVINYELPNVPETYVHRIGRT 333
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERF 387
GRAG +G A+S ER ++K I++
Sbjct: 334 GRAGTSGNAISFCGTEERKDLKNIQKL 360
>gi|163750900|ref|ZP_02158133.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
gi|161329324|gb|EDQ00321.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
Length = 492
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 177/426 (41%), Positives = 251/426 (58%), Gaps = 26/426 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +LKA+ GY PT +Q QAIPA + G+D++ ++QTG+GKTA F LP L
Sbjct: 14 MSFTSLGLSAPILKAVANKGYETPTPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL 73
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
L++ N R + + R LVLTPTRELA QV + + Y
Sbjct: 74 EL--------------LSRGN----------RAQAKKVRALVLTPTRELAAQVAESVDTY 109
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ +K+ + GG+ Q+ L + +IL+ATPGRL+D N G +NF+ L++LVLDE
Sbjct: 110 GKYLP-LKSAVVFGGVGIGPQISKLGKGVDILVATPGRLLDLYNQGAVNFNQLEVLVLDE 168
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI+KI+ A P RQ ++FSAT + +A+ + +P+ + V
Sbjct: 169 ADRMLDMGFIHDIKKILRALPAKRQNLMFSATFSDDIRKLAKGLVNNPVEISVTPRNATA 228
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
K++ Q I VD K L +L++ Q +VF+ TK A+ IA L AA +H
Sbjct: 229 KSVEQYIYMVDQ-KQKTAALIHLIKQNDWQQVLVFSRTKHGANRIAKNLEAKDITAAAIH 287
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + L N + G +++LVATD+AARGID+ + +V N+DLP PEDYVHRIGRT
Sbjct: 288 GNKSQGARTKALANFKSGLVRVLVATDIAARGIDIDQLPNVVNFDLPNVPEDYVHRIGRT 347
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRYRFNNNNW 420
GRAG +G AVSLV+ E ++ IER K+ IP + + GF P + + R + N
Sbjct: 348 GRAGASGQAVSLVSADESKLLRDIERLIKKNIPRKEVEGFVPTQVVAETDLNDRKHGQNR 407
Query: 421 KTHNIN 426
N N
Sbjct: 408 GPRNAN 413
>gi|168178014|ref|ZP_02612678.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum NCTC 2916]
gi|182671239|gb|EDT83213.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum NCTC 2916]
Length = 425
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 169/394 (42%), Positives = 243/394 (61%), Gaps = 24/394 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+++ + + + KAL + GY K T +QE++IP + G+DL+ +QTG+GKTAAF +P L
Sbjct: 1 MLFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ K K N N P R LVL PTRELA+Q+ + E Y
Sbjct: 61 QNLSKDK------KANKN----------------PKPIRALVLAPTRELAIQIGESFECY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ +K+ I GG+ Q ++L +IL+ATPGR++D N I+ +++ VLDE
Sbjct: 99 GKYIN-LKSAVIFGGVSQNPQTKVLREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMG I+D++KI+ P RQ +LFSAT+ + + ++I KDP+ ++V +
Sbjct: 158 ADRMLDMGMIHDVKKIISKLPKIRQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTV 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
ITQ + V K LL +LLRDK + A+VF+ TKR A++IA L +G A +H
Sbjct: 218 DTITQEVYHVRK-KQKRSLLKHLLRDKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ QNAR R L N + G+I++LVATD+AARGIDV ++HVFNY+LP PE YVHRIGRT
Sbjct: 277 GNKSQNARQRALNNFKEGKIRVLVATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
GRAG G A+S + E ++K IE+ ++IP+
Sbjct: 337 GRAGAKGVAISFCDIEETKSLKAIEKLINKEIPV 370
>gi|422638965|ref|ZP_16702395.1| helicase [Pseudomonas syringae Cit 7]
gi|440742982|ref|ZP_20922304.1| helicase [Pseudomonas syringae BRIP39023]
gi|330951359|gb|EGH51619.1| helicase [Pseudomonas syringae Cit 7]
gi|440376833|gb|ELQ13496.1| helicase [Pseudomonas syringae BRIP39023]
Length = 629
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N +P + R P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERLFP--NGVPDKSQ----------------RHGPRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KLYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++I+VATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|440720853|ref|ZP_20901265.1| helicase [Pseudomonas syringae BRIP34876]
gi|440727692|ref|ZP_20907918.1| helicase [Pseudomonas syringae BRIP34881]
gi|440363097|gb|ELQ00267.1| helicase [Pseudomonas syringae BRIP34881]
gi|440365223|gb|ELQ02337.1| helicase [Pseudomonas syringae BRIP34876]
Length = 629
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N +P + R P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERLFP--NGVPDKSQ----------------RHGPRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KLYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++I+VATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|254468401|ref|ZP_05081807.1| dead/deah box helicase domain protein [beta proteobacterium KB13]
gi|207087211|gb|EDZ64494.1| dead/deah box helicase domain protein [beta proteobacterium KB13]
Length = 444
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 175/397 (44%), Positives = 245/397 (61%), Gaps = 24/397 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F + G + KA+ ++ Y+ PT +QEQ IP +SG+D++ S+QTG+GKTAAF LP L
Sbjct: 1 MSFSNFGFIPPIGKAISRINYSTPTPIQEQCIPVVLSGKDVLASAQTGTGKTAAFCLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
NL + K + HK + P +L+L+PTRELA Q+ +R+
Sbjct: 61 ---------------NLVEKKPK-HKHKRNI-----SPDVLILSPTRELATQIEQELKRF 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
+M +S++GG+ Y Q +LL N L+ATPGRL+D + KIN H+ LV+DE
Sbjct: 100 SHFMD-TNIVSVVGGVSYKLQNKLLKSNVNFLVATPGRLMDLVKQRKINLKHIDALVIDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI+KI ++T +Q ++F+ATL+ + +A+ KDP + V K
Sbjct: 159 ADRMLDMGFIPDIKKIFESTSQDQQVLMFTATLNKQIEKIAQQFLKDPQRIAVEQENKSN 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
KNI Q V D K +L +L + + QA++FTATKR+AD ++D L + + LH
Sbjct: 219 KNIQQIAYPVADYNQKKLVLVDVLNEADLNQAIIFTATKREADRLSDELYLMNHRSKTLH 278
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+ Q R RT+ + I+ILVATDVAARGIDV ITHV N+DLP+ EDY+HRIGRT
Sbjct: 279 GDMSQRERTRTINRFKNNEIQILVATDVAARGIDVDDITHVINFDLPRQVEDYIHRIGRT 338
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVI 397
GRA R G A+SLV E+ ++KIE++ I IEVI
Sbjct: 339 GRAERKGKAISLVIDKEKFMLQKIEKYA--NIKIEVI 373
>gi|162148995|ref|YP_001603456.1| cold-shock DEAD box protein A [Gluconacetobacter diazotrophicus PAl
5]
gi|209545253|ref|YP_002277482.1| DEAD/DEAH box helicase [Gluconacetobacter diazotrophicus PAl 5]
gi|161787572|emb|CAP57168.1| putative cold-shock DEAD box protein A [Gluconacetobacter
diazotrophicus PAl 5]
gi|209532930|gb|ACI52867.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter
diazotrophicus PAl 5]
Length = 423
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 172/393 (43%), Positives = 241/393 (61%), Gaps = 25/393 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F + L E +L+AL + GYT PT +Q AIP ++GRDL+ +QTG+GKTAAF LP L
Sbjct: 3 TFADLQLAEPLLRALNEEGYTTPTPIQAGAIPHLLAGRDLLGLAQTGTGKTAAFALPIL- 61
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
++ TH R P R+LVL PTRELA Q+ + + Y
Sbjct: 62 --------------------QRLLTHHRRA--NPKGARVLVLAPTRELASQIDESFKSYA 99
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+M+ + I GG+ RQ++ + R ++L+A PGRL+D M G I+ S L++LVLDEA
Sbjct: 100 RHMR-LSHTVIFGGVGQGRQVEAMRRGVDVLVAAPGRLLDLMGQGHIDLSGLEVLVLDEA 158
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGF+ DI +IV P RQT+LFSAT+ + ++A + +DP ++V
Sbjct: 159 DRMLDMGFVRDIRRIVAELPRDRQTLLFSATMPKSIADLAHGLLRDPATVQVTPPSSTVD 218
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
I Q+++FVD +K L L+ +V +AVVFT K +A+ +A LN G +A +HG
Sbjct: 219 RIRQAVMFVD-TDNKRAALQLLVDSPKVERAVVFTLMKHEANKVAAFLNDHGIIAEAIHG 277
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ Q AR R + R G +K+LVATD+AARGIDV +THVFNYDLP PE YVHRIGRT
Sbjct: 278 NKSQGARERAMAGFRSGAVKVLVATDIAARGIDVDDVTHVFNYDLPNVPESYVHRIGRTA 337
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
RAGR+G+AVSL + +R ++ IE+ ++IP+
Sbjct: 338 RAGRDGWAVSLCDAEQRAWLRDIEKAIGKKIPV 370
>gi|148378643|ref|YP_001253184.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. ATCC
3502]
gi|153933936|ref|YP_001383027.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. ATCC
19397]
gi|153937665|ref|YP_001386574.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. Hall]
gi|148288127|emb|CAL82195.1| putative ATP-dependent RNA helicase rhle [Clostridium botulinum A
str. ATCC 3502]
gi|152929980|gb|ABS35480.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. ATCC
19397]
gi|152933579|gb|ABS39078.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. Hall]
Length = 425
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 186/453 (41%), Positives = 265/453 (58%), Gaps = 41/453 (9%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+++ + + + KAL + GY K T +QE++IP + GRDL+ +QTG+GKTAAF +P L
Sbjct: 1 MLFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGRDLVGCAQTGTGKTAAFAVPVL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ K +N+N P R LVL PTRELA+Q+ + E Y
Sbjct: 61 QNLSKDKK--------VNKN--------------PRTIRALVLAPTRELAIQIGESFECY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ +K+ I GG+ Q + L +IL+ATPGR++D N I+ +++ VLDE
Sbjct: 99 GKYIN-LKSAVIFGGVSQNPQTKALREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMG I+D++KI+ P RQ +LFSAT+ + + ++I KDP+ ++V +
Sbjct: 158 ADRMLDMGMIHDVKKIISKLPKARQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTV 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
ITQ + V K LL +LL+DK + A+VF+ TKR A++IA L +G A +H
Sbjct: 218 DTITQEVYHVRK-KQKRALLKHLLKDKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ QNAR R L N + G+I++LVATD+AARGIDV ++HVFNY+LP PE YVHRIGRT
Sbjct: 277 GNKSQNARQRALNNFKEGKIRVLVATDIAARGIDVNELSHVFNYNLPDIPETYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIP--------IEVINGFEPKKRIR----T 408
GRAG G A+S + E ++K IE+ ++IP I IN E KK
Sbjct: 337 GRAGAKGVAISFCDIEETKSLKAIEKLINKEIPVVEDHPYKIRHINEGEIKKENTKDNFN 396
Query: 409 YYSRYRFNNNNWK-THNINKSNITKRFYRQIKK 440
S + NW+ ++N K+N TK QIKK
Sbjct: 397 EKSSTKRQGGNWRYSNNRRKNNSTK----QIKK 425
>gi|398886255|ref|ZP_10641142.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM60]
gi|398190370|gb|EJM77600.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM60]
Length = 624
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N + +K H P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERLFP------------NGHPDKSQRHG------PRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+Y + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KVYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLPANHKRSLLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|422590822|ref|ZP_16665474.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|330878076|gb|EGH12225.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
morsprunorum str. M302280]
Length = 629
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N +P + R P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERLFP--NGVPDKSQ----------------RHGPRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KLYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++I+VATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|302186251|ref|ZP_07262924.1| helicase, C-terminal:Type III restriction enzyme, res
subunit:DEAD/DEAH box helicase, N-terminal [Pseudomonas
syringae pv. syringae 642]
Length = 629
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N +P + R P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERLFP--NGVPDKSQ----------------RHGPRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KLYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++I+VATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|237793963|ref|YP_002861515.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum Ba4 str.
657]
gi|229261675|gb|ACQ52708.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum Ba4 str.
657]
Length = 425
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 168/394 (42%), Positives = 244/394 (61%), Gaps = 24/394 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+++ + + + KAL + GY K T +QE++IP + G+DL+ +QTG+GKTAAF +P L
Sbjct: 1 MLFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ K K N N P R LVL PTRELA+Q+ + E Y
Sbjct: 61 QNLSKDK------KANKN----------------PRPIRALVLAPTRELAIQIAESFECY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ +K++ I GG+ Q ++L +IL+ATPGR++D N I+ +++ VLDE
Sbjct: 99 GKYIN-LKSVVIFGGVSQNPQTKVLREGVDILIATPGRMLDLFNQKYIDLRNIEFFVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMG I+D++KI+ P RQ +LFSAT+ + + ++I KDP+ ++V +
Sbjct: 158 ADRMLDMGMIHDVKKIISKLPKIRQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTV 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
ITQ + V K LL +LL+DK + A+VF+ TKR A++IA L +G A +H
Sbjct: 218 DTITQEVYHVRK-KQKRALLKHLLKDKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ QNAR R L N + G+I++LVATD+AARGIDV ++HVFNY+LP PE YVHRIGRT
Sbjct: 277 GNKSQNARQRALNNFKEGKIRVLVATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
GRAG G A+S + E ++K IE+ ++IP+
Sbjct: 337 GRAGAKGVAISFCDIEETKSLKAIEKLINKEIPV 370
>gi|398872343|ref|ZP_10627640.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM74]
gi|398203274|gb|EJM90099.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM74]
Length = 619
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N + +K H P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERLFP------------NGHPDKSQRHG------PRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+Y + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KVYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLPASHKRSLLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGTVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|398881140|ref|ZP_10636153.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM67]
gi|398190475|gb|EJM77698.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM67]
Length = 624
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N + +K H P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERLFP------------NGHPDKSQRHG------PRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+Y + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KVYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLPANHKRSLLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|422618956|ref|ZP_16687650.1| helicase [Pseudomonas syringae pv. japonica str. M301072]
gi|424065640|ref|ZP_17803114.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. avellanae
str. ISPaVe013]
gi|424070342|ref|ZP_17807777.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. avellanae
str. ISPaVe037]
gi|443641185|ref|ZP_21125035.1| Putative ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv.
syringae B64]
gi|330899330|gb|EGH30749.1| helicase [Pseudomonas syringae pv. japonica str. M301072]
gi|408000665|gb|EKG41012.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. avellanae
str. ISPaVe037]
gi|408003142|gb|EKG43351.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. avellanae
str. ISPaVe013]
gi|443281202|gb|ELS40207.1| Putative ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv.
syringae B64]
Length = 629
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N +P + R P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERLFP--NGVPDKSQ----------------RHGPRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KLYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++I+VATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|312963578|ref|ZP_07778059.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens WH6]
gi|311282087|gb|EFQ60687.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens WH6]
Length = 628
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 250/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ P + +Q R P QPR+LVLTPTRELA QV + +
Sbjct: 61 ERL------FPNGHPDKSQ------------RHGPRQPRVLVLTPTRELAAQVH---DSF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KLYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + +A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSQDITALAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAASHKRSLLAHLITHGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGSVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|447918800|ref|YP_007399368.1| ATP-dependent RNA helicase [Pseudomonas poae RE*1-1-14]
gi|445202663|gb|AGE27872.1| ATP-dependent RNA helicase [Pseudomonas poae RE*1-1-14]
Length = 632
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 250/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ P + +Q R P QPR+LVLTPTRELA QV + +
Sbjct: 61 ERL------FPNGHPDKSQ------------RHGPRQPRVLVLTPTRELAAQVH---DSF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KLYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + +A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSNDITALAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAASHKRSLLAHLITHGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGTVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|402771172|ref|YP_006590709.1| DEAD/DEAH box helicase [Methylocystis sp. SC2]
gi|401773192|emb|CCJ06058.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. SC2]
Length = 442
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 166/392 (42%), Positives = 243/392 (61%), Gaps = 25/392 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F +GL+E++L+AL + GYT PT VQ Q+IPA + GRDL+ +QTG+GKTAAF LP L
Sbjct: 1 MTFSDLGLNEILLRALEREGYTTPTPVQAQSIPALLQGRDLLGVAQTGTGKTAAFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ + K R P R L+L PTRELA Q+ + Y
Sbjct: 61 HRLLADKR-----------------------RPAPNTARALILAPTRELAAQIADSFRSY 97
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G + + + I+GG+ + Q ++L+R ++L+ATPGRL+DH+ SG++ + ++LVLDE
Sbjct: 98 GHFFRPSVGV-IVGGVSHRPQNEMLARGLDVLVATPGRLLDHLGSGRLRLATTEVLVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
AD MLD+GFI I +IV P RQT+LFSAT+ + +A+++ +DP + V
Sbjct: 157 ADHMLDLGFIVPIRQIVAKLPKQRQTLLFSATMPREISALADDMLRDPAKVSVTPAATTA 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q + V ++ LL LL D+ + +A+VFT TKR AD +A L +G A +H
Sbjct: 217 ERVAQHVYLVSGGAKRD-LLVELLNDREISRAIVFTRTKRGADRVAQHLESAGVGADAIH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+ R R L+ R+GR ++LVATD+AARGIDV +THV N++LP+ E YVHRIGRT
Sbjct: 276 GNKSQSQRLRALDGFRKGRTRVLVATDIAARGIDVDGVTHVVNFELPEVAEAYVHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQI 392
RAG G A+SL ++ ER ++ IE+ T+Q +
Sbjct: 336 ARAGATGQAISLCDNGERPLLRAIEKLTRQTL 367
>gi|398839163|ref|ZP_10596413.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM102]
gi|398113793|gb|EJM03637.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM102]
Length = 619
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N + +K H P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERLFP------------NGHPDKSQRHG------PRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+Y + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KVYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPSKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAASHKRSLLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGNLMGFD 381
>gi|378953384|ref|YP_005210872.1| protein RhlE1 [Pseudomonas fluorescens F113]
gi|359763398|gb|AEV65477.1| RhlE1 [Pseudomonas fluorescens F113]
Length = 623
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 250/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E ++ A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ P + +Q R P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERL------FPNGHPDKSQ------------RHGPRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+Y + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KVYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLPASHKRALLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|393762753|ref|ZP_10351379.1| DEAD/DEAH box helicase domain-containing protein [Alishewanella
agri BL06]
gi|392606375|gb|EIW89260.1| DEAD/DEAH box helicase domain-containing protein [Alishewanella
agri BL06]
Length = 424
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 167/402 (41%), Positives = 247/402 (61%), Gaps = 27/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+++ L E +L+ L + GY T VQ+QAIP +SG+D++ +QTG+GKTAAF LP L
Sbjct: 1 MQFQTLALAEPILRVLAEQGYQAATPVQQQAIPPILSGKDVLAGAQTGTGKTAAFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N K+ +PAQ R+LVLTPTRELA QV + + Y
Sbjct: 61 QQLL---------------NAPKV--------LQPAQVRVLVLTPTRELAQQVFESVQTY 97
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+ ++ GG+ Q + +IL+ATPGRLIDH++ I+ S L++LVLDE
Sbjct: 98 SRYLS-VRCAVFYGGVSIRPQYDEAEQGLDILVATPGRLIDHLHQQTIDLSQLEVLVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI++I+ P RQT+LFSAT + +A+ + P++++V +
Sbjct: 157 ADRMLDMGFIVDIKRIMAKLPAQRQTLLFSATYSKEIKILADELLNKPVLIEVATANATA 216
Query: 241 KNITQSILFVDDILHKNR-LLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+TQ + VD H+ R L+ +++ + Q ++F TK AD +A +L G A +
Sbjct: 217 DRVTQQVYLVDR--HRKRELISHMIGMQNWPQVLIFVRTKHGADRLAKQLQKDGLTTAAI 274
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD Q AR R L+ ++G+++ILVATD+AARG+D+ + +V NYDLP+ EDYVHRIGR
Sbjct: 275 HGDKAQGARQRALDEFKQGKVRILVATDIAARGLDISELPYVVNYDLPQVAEDYVHRIGR 334
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
TGRAG +G AV+LV E ++ IE+ T+Q +P +++ G+E
Sbjct: 335 TGRAGLSGVAVTLVGPDELGALQDIEKLTQQVLPTQIVPGYE 376
>gi|383758280|ref|YP_005437265.1| ATP-dependent RNA helicase RhlE [Rubrivivax gelatinosus IL144]
gi|381378949|dbj|BAL95766.1| ATP-dependent RNA helicase RhlE [Rubrivivax gelatinosus IL144]
Length = 466
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 174/402 (43%), Positives = 245/402 (60%), Gaps = 22/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
MNF +GL E +L+A+ GY PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MNFTDLGLAEPLLRAVRDQGYDVPTPIQAQAIPAVLQGGDLLAGAQTGTGKTAGFTLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ ++SK PV + +I R LVLTPTRELA QV + Y
Sbjct: 61 QRLSASK---PV-----RDSRGRIAV------------RALVLTPTRELAAQVEESVRAY 100
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ + ++ + GG+ Q+ L + +IL+ATPGRL+DH G ++ S++QILVLDE
Sbjct: 101 GKYLP-LTSMVMFGGVGMQPQIDRLKKGVDILVATPGRLLDHHGQGTLDLSNVQILVLDE 159
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI+K++ P +Q++LFSAT + +A+ + P +++V
Sbjct: 160 ADRMLDMGFIHDIKKVLAVLPQKKQSLLFSATFSDEIKALADRLLNQPALIEVARRNATA 219
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
I Q + V K LL +L+R Q +VFT K A+ +A+ LN G A +H
Sbjct: 220 DTIAQKVYPVGR-EKKKELLAHLIRQGDWHQVLVFTRMKHGANRLAEYLNEQGITAMAIH 278
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + L + G +++LVATD+AARGID+ + HV NY+LP PEDYVHRIGRT
Sbjct: 279 GNKSQGARTKALAEFKAGTLQVLVATDIAARGIDIDQLPHVVNYELPNVPEDYVHRIGRT 338
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG +G AVSLV E + ++ I+R K++IP+E + GFEP
Sbjct: 339 GRAGASGEAVSLVCLDEEIFLRDIQRLIKREIPVEAMPGFEP 380
>gi|387816925|ref|YP_005677269.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum H04402 065]
gi|322804966|emb|CBZ02525.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum H04402 065]
Length = 425
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 186/453 (41%), Positives = 268/453 (59%), Gaps = 41/453 (9%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+++ + + + KAL + GY K T +QE++IP + G+DL+ +QTG+GKTAAF +P L
Sbjct: 1 MLFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ K K N N P R LVL PTRELA+Q+ + E Y
Sbjct: 61 QNLSKDK------KANKN----------------PRSIRALVLAPTRELAIQIGESFECY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ +K+ I GG+ Q ++L +IL+ATPGR++D N I+ +++ VLDE
Sbjct: 99 GKYIN-LKSAVIFGGVSQNPQTKVLREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMG I+D++KI+ P RQ +LFSAT+ + + ++I KDP+ ++V +
Sbjct: 158 ADRMLDMGMIHDVKKIISKLPKIRQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTV 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
ITQ + V K LL +LL+DK + A+VF+ TKR A++IA L +G A +H
Sbjct: 218 DTITQEVYHVRK-KQKRALLKHLLKDKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ QNAR R L N + G+I++LVATD+AARGIDV ++HVFNY+LP PE YVHRIGRT
Sbjct: 277 GNKSQNARQRALNNFKEGKIRVLVATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIP--------IEVINGFEPKKR-IRTYYS 411
GRAG G A+S + E ++K IE+ ++IP I IN E KK + Y+
Sbjct: 337 GRAGAKGVAISFCDIEETKSLKAIEKLIHKEIPVVEDHPYKIRHINEDEVKKENTKNNYN 396
Query: 412 R---YRFNNNNWK-THNINKSNITKRFYRQIKK 440
+ + NW+ ++N K+N TK QIKK
Sbjct: 397 KKPSSKRQGGNWRYSNNRRKNNSTK----QIKK 425
>gi|398864458|ref|ZP_10619992.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM78]
gi|398245057|gb|EJN30587.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM78]
Length = 624
Score = 317 bits (813), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N + +K H P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERLFP------------NGHPDKSQRHG------PRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+Y + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KVYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLPASHKRALLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGTVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|394988591|ref|ZP_10381426.1| hypothetical protein SCD_00993 [Sulfuricella denitrificans skB26]
gi|393791970|dbj|GAB71065.1| hypothetical protein SCD_00993 [Sulfuricella denitrificans skB26]
Length = 476
Score = 317 bits (813), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 171/408 (41%), Positives = 244/408 (59%), Gaps = 34/408 (8%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+++GL +L+A+ GYT+PT +Q QAIP + GRDL+ +QTG+GKTA F LP L
Sbjct: 1 MSFENLGLSAELLRAVTDQGYTEPTPIQAQAIPVVLEGRDLMGGAQTGTGKTAGFTLPLL 60
Query: 61 HKFA------SSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVT 114
+ +S K PV R L+LTPTRELA QV
Sbjct: 61 QLLSIHANTSTSPAKHPV--------------------------RALILTPTRELAAQVE 94
Query: 115 AATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQ 174
+ + YG Y+ +K+ + GG+ Q+ L EIL+ATPGRL+DH+ +N S ++
Sbjct: 95 ESVQTYGKYLP-LKSTVVFGGVNIKEQIAALKGGVEILVATPGRLLDHVEQKTVNLSKVE 153
Query: 175 ILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVN 234
ILVLDEADRMLDMGF+ DI++I+ P RQ +LFSAT G + +++ + DP++++V
Sbjct: 154 ILVLDEADRMLDMGFLPDIKRIIALLPAKRQNLLFSATFAGEIKKLSDQLLTDPVLIEVA 213
Query: 235 SIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGF 294
+N+TQ I VD K LL +L++ + + Q +VF+ TK A +A +L G
Sbjct: 214 RRNAASENVTQVIYPVDH-ERKRELLAHLIKSENLQQVLVFSRTKHGASRLAQQLEKDGI 272
Query: 295 LAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYV 354
A +HGD Q R + L + G +++LVATDVAARG+D+ + HV N+DLP PEDYV
Sbjct: 273 SATAIHGDKSQQQRTQALAEFKDGTVRVLVATDVAARGLDIDQLPHVVNFDLPNAPEDYV 332
Query: 355 HRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
HRIGRTGRAG +G A+SLV E + +IE K+++P + GFEP
Sbjct: 333 HRIGRTGRAGSSGEAISLVCADELRMLAEIESMLKRELPRITVPGFEP 380
>gi|436834274|ref|YP_007319490.1| ATP-dependent RNA helicase RhlE [Fibrella aestuarina BUZ 2]
gi|384065687|emb|CCG98897.1| ATP-dependent RNA helicase RhlE [Fibrella aestuarina BUZ 2]
Length = 517
Score = 317 bits (813), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 169/398 (42%), Positives = 241/398 (60%), Gaps = 24/398 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
MNF + + +LKAL + GYT PT +QEQAIP +GRDL+ +QTG+GKTAAF +P L
Sbjct: 1 MNFNDLAIIAPILKALAEEGYTTPTPIQEQAIPHVNAGRDLLGCAQTGTGKTAAFSIPTL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + KK +NKI + L+LTPTRELA+Q+ + Y
Sbjct: 61 QRLYT--------KKQSGDWSNKI--------------KALILTPTRELAIQIDESLAAY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ ++ I GG+ Q L+R +IL ATPGRL+D MN G +N ++ VLDE
Sbjct: 99 GRHVG-LRHTVIFGGVGQKPQTDALARGVDILTATPGRLLDLMNQGFVNLKGIEFFVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+D+ K++ P RQ++ FSAT+ + +A+ I DP+ ++V +
Sbjct: 158 ADRMLDMGFIHDVRKVLAVLPNKRQSLFFSATMPPEIVKLADTILTDPVKVEVTPVSSTA 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ QS+ V+ +N LL ++L DK + A+VFT TK AD +A+ LN G +H
Sbjct: 218 DTVRQSVYLVERDNKRN-LLRHILEDKAIESALVFTRTKHGADKVAEFLNKQGIKTEAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ QNAR R L N + ++LVATD+AARGIDV ++HV N++LP PE YVHRIGRT
Sbjct: 277 GNKAQNARQRALSNFKERTTRVLVATDIAARGIDVDNLSHVINFELPNIPESYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVIN 398
GRAG +G A+S ER +K I++ +++P+EV N
Sbjct: 337 GRAGASGIAISFCETDERAYLKDIQKLIGRKVPVEVAN 374
>gi|442314863|ref|YP_007356166.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
RA-CH-2]
gi|441483786|gb|AGC40472.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
RA-CH-2]
Length = 376
Score = 317 bits (813), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 167/387 (43%), Positives = 238/387 (61%), Gaps = 27/387 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
MNF + L +LKA+ GYT PT +QE+AIP + GRDLI +QTG+GKTAAF +P L
Sbjct: 6 MNFTQLSLSSPILKAISDAGYTTPTAIQEKAIPTILEGRDLIGCAQTGTGKTAAFSIPLL 65
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + P K++ R L+LTPTRELA+Q+ E+Y
Sbjct: 66 QILSET----PKKGKSV---------------------RALILTPTRELAIQIQENIEQY 100
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
++ IK +SI GG+P +Q + L++ +IL+ATPGRL+D M G ++ S ++ILVLDE
Sbjct: 101 SKFLN-IKHLSIFGGVPQGKQERALNQGVDILIATPGRLLDLMQQGLLSLSQIEILVLDE 159
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF+ND++KI+ P RQT+ FSAT+ + AE I +P + V +
Sbjct: 160 ADRMLDMGFVNDVKKILTKVPKKRQTLFFSATMPNSIRQFAETILDNPAEVTVTPVSSTA 219
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
K I QS+ FV+ K LL +L+D ++++FT TK AD + +L +G AA +H
Sbjct: 220 KTIEQSVYFVEKN-DKTNLLINILKDTSELRSLIFTRTKHGADRLVKQLGRTGIFAAAIH 278
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ QNAR + L++ + RI +L+ATD+AARGID+ + V NY+LP PE YVHRIGRT
Sbjct: 279 GNKSQNARQKALKDFKDNRISVLIATDIAARGIDIDELPQVINYELPNVPETYVHRIGRT 338
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERF 387
GRAG +G A+S ER ++K I++
Sbjct: 339 GRAGTSGNAISFCGTEERKDLKNIQKL 365
>gi|330812324|ref|YP_004356786.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|423699836|ref|ZP_17674326.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens
Q8r1-96]
gi|327380432|gb|AEA71782.1| putative ATP-dependent RNA helicase [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|387996412|gb|EIK57742.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens
Q8r1-96]
Length = 622
Score = 317 bits (813), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 250/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E ++ A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ P + +Q R P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERL------FPNGHPDKSQ------------RHGPRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+Y + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KVYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLPASHKRALLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|387896114|ref|YP_006326411.1| ATP-dependent RNA helicase [Pseudomonas fluorescens A506]
gi|387161761|gb|AFJ56960.1| ATP-dependent RNA helicase, putative [Pseudomonas fluorescens A506]
Length = 627
Score = 317 bits (813), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 250/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ P + +Q R P QPR+LVLTPTRELA QV + +
Sbjct: 61 ERL------FPNGHPDKSQ------------RHGPRQPRVLVLTPTRELAAQVH---DSF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KLYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + +A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSQDITALAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAASHKRSLLAHLITHGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGSVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|295106692|emb|CBL04235.1| Superfamily II DNA and RNA helicases [Gordonibacter pamelaeae
7-10-1-b]
Length = 530
Score = 317 bits (813), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 170/399 (42%), Positives = 238/399 (59%), Gaps = 27/399 (6%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F +GL + L A+ K+GY PT VQEQAIP + GRDLI ++ TG+GKTAAF+LP L
Sbjct: 4 FADLGLSKDALAAVEKLGYENPTPVQEQAIPLVLEGRDLIAAASTGTGKTAAFLLPIL-- 61
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
+ +P R++ + PR+LV++PTRELA Q+ +
Sbjct: 62 -----STLP------------------RVKGRNRAPRVLVVSPTRELAQQIARTCMQISR 98
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+ ++ GG PY Q++ L ++L+ATPGRL D M G +N S +++LVLDEAD
Sbjct: 99 QTRHF-TTTVFGGTPYGPQIKELRGGTDVLIATPGRLKDLMKRGVVNLSSVEVLVLDEAD 157
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLDMGF+ D+ IVDATP RQT+LFSAT+D + ++ DP ++++ + K
Sbjct: 158 RMLDMGFLPDVTTIVDATPECRQTLLFSATIDQSIQKNLGSLLNDPAMVEIARNGETAKT 217
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
+ Q ++ + + +K LL+ +LR+K + +VF TK + A+ L +GF A +H D
Sbjct: 218 VEQFMMPIKN-FNKPELLEAVLREKGSERIIVFARTKNRTEDCAEALCDAGFRAESIHSD 276
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
Q AR R LEN RRG+ ILVATDV ARGIDVP + HV N+DLP PEDYVHRIGRTGR
Sbjct: 277 KSQGARRRALENFRRGKTSILVATDVLARGIDVPDVDHVINFDLPDMPEDYVHRIGRTGR 336
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
AG G+A+S V ++ IER + IP + +E
Sbjct: 337 AGEKGYAISFVTRETSRTLRDIERLIGKDIPFMELETYE 375
>gi|431804802|ref|YP_007231705.1| DEAD/DEAH box helicase [Pseudomonas putida HB3267]
gi|430795567|gb|AGA75762.1| DEAD/DEAH box helicase [Pseudomonas putida HB3267]
Length = 627
Score = 317 bits (813), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 170/403 (42%), Positives = 252/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ P + +Q R P QPR+LVLTPTRELA QV + +
Sbjct: 61 ERL------FPAGHPDKSQ------------RHGPRQPRVLVLTPTRELAAQVH---DSF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+Y + + +S I GG+ Q+Q +++ ++L+A PGRL+D GK++ +H++ILVL
Sbjct: 100 KVYARDLPLVSACIFGGVGMNPQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI+D++K++ P RQ +LFSAT + ++A+ + +P ++V
Sbjct: 160 DEADRMLDMGFIHDVKKVLARLPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + + HK LL +L+ Q +VFT TK A+ +A+ L G AA
Sbjct: 220 TVERIEQRVYRLP-ASHKRALLAHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + +++LVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKANSVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+S+V E +K IER TKQ+IP + GF+
Sbjct: 339 RTGRAGRSGEAISMVAPDEEKLLKSIERVTKQKIPDGDLMGFD 381
>gi|398893365|ref|ZP_10646079.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM55]
gi|398184265|gb|EJM71721.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM55]
Length = 620
Score = 317 bits (813), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N + +K H P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERLFP------------NGHPDKSQRHG------PRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+Y + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KVYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLPASHKRALLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGTVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|408479482|ref|ZP_11185701.1| ATP-dependent RNA helicase [Pseudomonas sp. R81]
Length = 626
Score = 317 bits (813), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 250/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ P + +Q R P QPR+LVLTPTRELA QV + +
Sbjct: 61 ERL------FPNGHPDKSQ------------RHGPRQPRVLVLTPTRELAAQVH---DSF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KLYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + +A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSQDITALAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAASHKRALLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGSVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|395650585|ref|ZP_10438435.1| ATP-dependent RNA helicase [Pseudomonas extremaustralis 14-3
substr. 14-3b]
Length = 635
Score = 317 bits (813), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 250/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ P + +Q R P QPR+LVLTPTRELA QV + +
Sbjct: 61 ERL------FPNGHPDKSQ------------RHGPRQPRVLVLTPTRELAAQVH---DSF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KLYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + +A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSNDITALAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAASHKRSLLAHLITHGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|209808966|ref|YP_002264504.1| putative ATP-dependent RNA helicase (DEAD/DEAH box helicase)
[Aliivibrio salmonicida LFI1238]
gi|208010528|emb|CAQ80896.1| putative ATP-dependent RNA helicase (DEAD/DEAH box helicase)
[Aliivibrio salmonicida LFI1238]
Length = 495
Score = 317 bits (813), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 168/406 (41%), Positives = 246/406 (60%), Gaps = 26/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S+GL +LKA+ GY+ P+ +Q QAIPA I G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MGFTSLGLSAPILKAVEAQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + ++L+F Q R L+LTPTRELA QV + E+Y
Sbjct: 61 ERLSKG----------------------QKLKFN--QVRALILTPTRELAAQVHESVEKY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
+ + + + + GG+ QMQ L + ++L+ATPGRL+D N I F L+ILVLDE
Sbjct: 97 SVNLP-LTSDVVFGGVKANPQMQRLRKGVDVLVATPGRLLDLANQNAIKFDQLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI+KI++ P RQ +LFSAT + +A+ + +P+ + V +
Sbjct: 156 ADRMLDMGFIHDIKKILNKLPKNRQNLLFSATFSDEIRQLAKGLVNNPVEISVATRNTTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + QS+ VD K R+L L++D Q +VF+ TK A+ +A L G +A +H
Sbjct: 216 ETVEQSVYVVDKT-KKARVLTKLIKDNDWKQVLVFSKTKHGANRLAKTLEEKGISSAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + L N + G++++LVATD+AARG+D+ + V N DLPK PEDYVHRIGRT
Sbjct: 275 GNKSQGARTKALANFKSGQVRVLVATDIAARGLDIEQLPQVINVDLPKVPEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
GRAG G A+S V+ E + IER ++ +P + GFEP+ ++
Sbjct: 335 GRAGATGKAISFVSEDEASELFAIERLIQKILPRHTLEGFEPEMKV 380
>gi|90408477|ref|ZP_01216636.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
gi|90310409|gb|EAS38535.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
Length = 426
Score = 317 bits (813), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 172/402 (42%), Positives = 246/402 (61%), Gaps = 26/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +L+A+ + GYTKP+ +QEQAIP +SG+D++ ++QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLPEELLRAVKEQGYTKPSPIQEQAIPVILSGKDVMAAAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ R K Q R+L+LTPTRELA Q+ + Y
Sbjct: 61 ANLMKGE------------------------RAKANQVRVLILTPTRELAAQIHESVCNY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G + +++ + GG+ QMQLL R ++L+ATPGRL+D + F L++LVLDE
Sbjct: 97 GQNLP-LRSAVVFGGVKINPQMQLLRRGVDVLVATPGRLLDLYQQNAVRFKQLEVLVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++I+ P RQ +LFSAT + +A+ + DP+ + V+
Sbjct: 156 ADRMLDMGFIHDIKRIIKFLPEKRQNLLFSATFSNDIRKLAKGLVNDPVEISVSPRNTTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+++TQ I VD K+ LL L+++ + Q +VF+ TK A+ + +L G L+A +H
Sbjct: 216 ESVTQFIYEVDKT-KKSPLLSTLIKENKWKQVLVFSKTKHGANRLVKQLEGRGILSAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G+I +LVATD+AARGID+ + V N+DLP EDYVHRIGRT
Sbjct: 275 GNKSQAARTRALASFKEGKITVLVATDIAARGIDIDQLEQVVNFDLPHVSEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G A+SLV E +K IE+ K+ IP +V GFEP
Sbjct: 335 GRAGNKGEAISLVCEDEFKLLKDIEKLIKKIIPRKVQPGFEP 376
>gi|398910426|ref|ZP_10655027.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM49]
gi|398185779|gb|EJM73170.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM49]
Length = 621
Score = 317 bits (813), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N + +K H P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERLFP------------NGHPDKSQRHG------PRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+Y + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KVYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAASHKRSLLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGTVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|388468941|ref|ZP_10143151.1| putative ATP-dependent RNA helicase [Pseudomonas synxantha BG33R]
gi|388012521|gb|EIK73708.1| putative ATP-dependent RNA helicase [Pseudomonas synxantha BG33R]
Length = 627
Score = 317 bits (813), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 250/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ P + +Q R P QPR+LVLTPTRELA QV + +
Sbjct: 61 ERL------FPNGHPDKSQ------------RHGPRQPRVLVLTPTRELAAQVH---DSF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KLYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + +A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSQDITALAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAASHKRSLLAHLITHGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGTVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|375111010|ref|ZP_09757223.1| DEAD/DEAH box helicase domain-containing protein [Alishewanella
jeotgali KCTC 22429]
gi|374568907|gb|EHR40077.1| DEAD/DEAH box helicase domain-containing protein [Alishewanella
jeotgali KCTC 22429]
Length = 424
Score = 317 bits (813), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 167/402 (41%), Positives = 247/402 (61%), Gaps = 27/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+++ L E +L+ L + GY T VQ+QAIP +SG+D++ +QTG+GKTAAF LP L
Sbjct: 1 MQFQTLALAEPILRVLAEQGYQAATPVQQQAIPPILSGKDVLAGAQTGTGKTAAFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N K+ +PAQ R+LVLTPTRELA QV + + Y
Sbjct: 61 QQLL---------------NAPKV--------LQPAQVRVLVLTPTRELAQQVFESVQTY 97
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+ ++ GG+ Q + +IL+ATPGRLIDH++ I+ S L++LVLDE
Sbjct: 98 SRYLS-VRGAVFYGGVSIRPQYDEAEQGLDILVATPGRLIDHLHQQTIDLSQLEVLVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI++I+ P RQT+LFSAT + +A+ + P++++V +
Sbjct: 157 ADRMLDMGFIVDIKRIMAKLPAQRQTLLFSATYSKEIKILADELLNKPVLIEVATANATA 216
Query: 241 KNITQSILFVDDILHKNR-LLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+TQ + VD H+ R L+ +++ + Q ++F TK AD +A +L G A +
Sbjct: 217 DRVTQQVYLVDR--HRKRELISHMIGMQNWPQVLIFVRTKHGADRLAKQLQKDGLTTAAI 274
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HGD Q AR R L+ ++G+++ILVATD+AARG+D+ + +V NYDLP+ EDYVHRIGR
Sbjct: 275 HGDKAQGARQRALDEFKQGKVRILVATDIAARGLDISELPYVVNYDLPQVAEDYVHRIGR 334
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
TGRAG +G AV+LV E ++ IE+ T+Q +P +++ G+E
Sbjct: 335 TGRAGLSGVAVTLVGPDELGALQDIEKLTQQVLPTQIVPGYE 376
>gi|398859280|ref|ZP_10614959.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM79]
gi|398237249|gb|EJN23006.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM79]
Length = 619
Score = 317 bits (813), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N + +K H P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERLFP------------NGHPDKSQRHG------PRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+Y + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KVYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPSKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLPANHKRSLLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGNLMGFD 381
>gi|154252927|ref|YP_001413751.1| DEAD/DEAH box helicase [Parvibaculum lavamentivorans DS-1]
gi|154156877|gb|ABS64094.1| DEAD/DEAH box helicase domain protein [Parvibaculum lavamentivorans
DS-1]
Length = 448
Score = 317 bits (813), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 170/401 (42%), Positives = 249/401 (62%), Gaps = 27/401 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F +G+ E + +AL YT PT +Q QAIPA + GRDL+ +QTG+GKTAAF LP L
Sbjct: 4 VTFADLGVAEPLCRALAANNYTNPTPIQAQAIPALLEGRDLLGLAQTGTGKTAAFALPIL 63
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
A++ K +P + R L+L PTRELA+Q++ + E Y
Sbjct: 64 QILAAANEK-----------------------RQPKEARALILAPTRELAVQISQSIESY 100
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G K ++ I GG+ RQ++ ++ +I++ATPGRL+D MN +N S +LVLDE
Sbjct: 101 GKNFK-LRHTVIFGGVNQFRQVKAMTAGVDIVVATPGRLLDLMNQKHVNLSRTSLLVLDE 159
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI D+ KI+ A P RQ++LFSAT+ + ++A+ I ++P+ ++V
Sbjct: 160 ADRMLDMGFIRDVRKIIAAMPRQRQSLLFSATMPSSIQHLADEILREPVRVEVTPEVVTV 219
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
I Q +L VD K LL LL + + + +VFT TK A+ ++++L+ SG L+ +H
Sbjct: 220 DKIDQRVLHVDG-KRKRELLAKLLDNSELSRVIVFTRTKHCANRVSEQLDKSGVLSEAIH 278
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L+ R G+ ++LVATD+AARGIDV ITHV NY+LP PE YVHRIGRT
Sbjct: 279 GNKSQGARQRALDMFRNGKARVLVATDIAARGIDVSDITHVINYELPNEPESYVHRIGRT 338
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RAG++G A+S + +ER +++ IE+ TK+ P+ V++ E
Sbjct: 339 ARAGKSGIALSFCDASERSHLRSIEKLTKR--PLTVMDTTE 377
>gi|422674889|ref|ZP_16734238.1| helicase, partial [Pseudomonas syringae pv. aceris str. M302273]
gi|330972612|gb|EGH72678.1| helicase, partial [Pseudomonas syringae pv. aceris str. M302273]
Length = 498
Score = 317 bits (813), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 174/403 (43%), Positives = 250/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GK F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKAGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N +P + R P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERL--FPNGVPDKSQ----------------RHGPRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KLYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++I+VATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|153939895|ref|YP_001390000.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum F str.
Langeland]
gi|384461069|ref|YP_005673664.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum F str.
230613]
gi|152935791|gb|ABS41289.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum F str.
Langeland]
gi|295318086|gb|ADF98463.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum F str.
230613]
Length = 425
Score = 317 bits (812), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 182/453 (40%), Positives = 266/453 (58%), Gaps = 41/453 (9%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+++ + + + KAL + GY K T +QE++IP + G+DL+ +QTG+GKTAAF +P L
Sbjct: 1 MLFENLEIIKPIQKALKEEGYKKTTPIQERSIPYILDGKDLVGCAQTGTGKTAAFAVPVL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ K K N N P R LVL PTRELA+Q+ + E Y
Sbjct: 61 QNLSKDK------KANKN----------------PRPIRALVLAPTRELAIQIAESFECY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ +K+ I GG+ Q ++L +IL+ATPGR++D N I+ +++ VLDE
Sbjct: 99 GKYIN-LKSAVIFGGVSQNPQTKVLREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMG I+D++KI+ P RQ +LFSAT+ + + ++I KDP+ ++V +
Sbjct: 158 ADRMLDMGMIHDVKKIISKLPKVRQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTV 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
ITQ + V K LL +LL+DK + A+VF+ TKR A++IA L +G A +H
Sbjct: 218 DTITQEVYHVRK-KQKRALLKHLLKDKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ QNAR R L N + G+I++LVATD+AARGIDV ++HVFNY+LP PE YVHRIGRT
Sbjct: 277 GNKSQNARQRALNNFKEGKIRVLVATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRYRFNNN-- 418
GRAG G A+S + E ++K IE+ ++IP+ + ++ + + NNN
Sbjct: 337 GRAGAKGVAISFCDIEETKSLKAIEKLINKEIPVVEEHPYKIRHINEDEVKKENTNNNSN 396
Query: 419 ----------NWK-THNINKSNITKRFYRQIKK 440
NW+ ++N K+N TK QIKK
Sbjct: 397 KKPSSKRQGGNWRYSNNRRKNNSTK----QIKK 425
>gi|398923409|ref|ZP_10660668.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM48]
gi|398175330|gb|EJM63091.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM48]
Length = 624
Score = 317 bits (812), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N + +K H P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERLFP------------NGHPDKSQRHG------PRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+Y + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KVYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAASHKRSLLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGTVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|440739276|ref|ZP_20918794.1| ATP-dependent RNA helicase [Pseudomonas fluorescens BRIP34879]
gi|440379873|gb|ELQ16453.1| ATP-dependent RNA helicase [Pseudomonas fluorescens BRIP34879]
Length = 628
Score = 317 bits (812), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 250/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ P + +Q R P QPR+LVLTPTRELA QV + +
Sbjct: 61 ERL------FPNGHPDKSQ------------RHGPRQPRVLVLTPTRELAAQVH---DSF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KLYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + +A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSNDITALAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAASHKRSLLAHLITHGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGTVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|407067967|ref|ZP_11098805.1| ATP-dependent RNA helicase [Vibrio cyclitrophicus ZF14]
Length = 538
Score = 317 bits (812), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 172/402 (42%), Positives = 244/402 (60%), Gaps = 26/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +LKA+ GY KP+ +QE+A+PA ++G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MSFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ K P +++N Q R LVLTPTRELA QV + +Y
Sbjct: 61 EMLS----KGPRVRQN--------------------QVRALVLTPTRELAAQVNGSVVKY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G+ + + + + GG+ QMQ L + ++L+ATPGRL+D N + F L+ILVLDE
Sbjct: 97 GINLP-LTSTVVFGGVKINPQMQKLRKGSDVLVATPGRLLDLYNQNAVRFDQLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ +LFSAT + ++A+ + +P+ + V+
Sbjct: 156 ADRMLDMGFIRDIRKILAFLPKKRQNLLFSATFSDDIRSLAKGLVNNPVEISVSPANSTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
K + QSI VD K+ +L L++D Q +VF+ TK A+ +A L AAP+H
Sbjct: 216 KTVEQSIYPVDK-KKKSAMLAKLIKDNDWRQVLVFSKTKHGANKLARFLEEQDITAAPIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + LEN + G++++LVATD+AARGID+P + V N+DLP EDYVHRIGRT
Sbjct: 275 GNKSQGARTKALENFKTGKVRVLVATDIAARGIDIPQLPQVVNFDLPHVSEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G A+SLV E + IER +Q + + GF P
Sbjct: 335 GRAGEVGKAISLVCADEVGELFGIERLIQQVLERRELEGFSP 376
>gi|398995110|ref|ZP_10697999.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM21]
gi|398130677|gb|EJM20011.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM21]
Length = 624
Score = 317 bits (812), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N + +K H P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERLFP------------NGHPDKSQRHG------PRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+Y + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KVYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLPANHKRSLLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGNLMGFD 381
>gi|407368126|ref|ZP_11114658.1| ATP-dependent RNA helicase [Pseudomonas mandelii JR-1]
Length = 625
Score = 317 bits (812), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N + +K H P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERLFP------------NGHPDKSQRHG------PRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+Y + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KVYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPSKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLPANHKRSLLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGNLMGFD 381
>gi|424778219|ref|ZP_18205170.1| ATP-dependent RNA helicase [Alcaligenes sp. HPC1271]
gi|422887047|gb|EKU29458.1| ATP-dependent RNA helicase [Alcaligenes sp. HPC1271]
Length = 487
Score = 317 bits (812), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 174/424 (41%), Positives = 249/424 (58%), Gaps = 31/424 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F S+ L E +L+A+ GYT PT +Q QAIP I G DL+ ++QTG+GKTA F LP L
Sbjct: 5 ITFASLELAEPLLRAVTDAGYTHPTPIQAQAIPKVIEGGDLLAAAQTGTGKTAGFTLPIL 64
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ + N QN KP +PR L+L PTRELA QV + Y
Sbjct: 65 HRLLN----------NPQQNR------------KPGRPRALILAPTRELAAQVEESVRLY 102
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
+ + ++++ + GG+ Q L + +IL+ATPGRL+DH+ ++ + ++ILVLDE
Sbjct: 103 SQHTR-LRSMVMFGGVNINPQFHALRKPLDILVATPGRLLDHVRQRTVDLTGVEILVLDE 161
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ PV RQT+LFSAT + +A +P + V +
Sbjct: 162 ADRMLDMGFIRDIRKIISLMPVDRQTLLFSATFSDEIRELARGSLNNPDEVAVAARNTTN 221
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ ITQ ++ D HK LL +++R+ Q +VF TK A+ +A++L+ G A LH
Sbjct: 222 ELITQQVILADQA-HKRDLLSHIIRESGWNQVLVFCRTKHGANRLAEKLSKDGMAAEALH 280
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + G++ +LVATD+AARG+D+ + +V N++LP PEDYVHRIGRT
Sbjct: 281 GNKSQAARTRALAGFKNGKVVVLVATDIAARGLDIDQLPYVVNFELPNVPEDYVHRIGRT 340
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI-------RTYYSRY 413
GRAG G A+SLV+ +E +K+IER T+ I V+ G+ P R Y+
Sbjct: 341 GRAGSEGVALSLVDRSEMRLLKQIERMTRNPIERIVVEGWTPPSRAALAEEAKEDTYAER 400
Query: 414 RFNN 417
RFN+
Sbjct: 401 RFNS 404
>gi|398953918|ref|ZP_10675662.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM33]
gi|426411977|ref|YP_007032076.1| ATP-dependent RNA helicase [Pseudomonas sp. UW4]
gi|398153220|gb|EJM41725.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM33]
gi|426270194|gb|AFY22271.1| ATP-dependent RNA helicase [Pseudomonas sp. UW4]
Length = 620
Score = 317 bits (812), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N + +K H P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERLFP------------NGHPDKSQRHG------PRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+Y + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KVYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLPASHKRALLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGTVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|423694045|ref|ZP_17668565.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SS101]
gi|388000287|gb|EIK61616.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SS101]
Length = 627
Score = 317 bits (812), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 250/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ P + +Q R P QPR+LVLTPTRELA QV + +
Sbjct: 61 ERL------FPNGHPDKSQ------------RHGPRQPRVLVLTPTRELAAQVH---DSF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KLYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + +A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSQDITALAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAASHKRSLLAHLITHGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGTVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|241763727|ref|ZP_04761775.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
gi|241367032|gb|EER61417.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
Length = 612
Score = 317 bits (812), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 180/437 (41%), Positives = 251/437 (57%), Gaps = 42/437 (9%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRD-------LIVSSQTGSGKTAA 54
F +GL +++A+ +GYT+PT VQ +AIP A+ D L+VSSQTGSGKTAA
Sbjct: 41 GFIELGLAPELVQAVADLGYTQPTSVQLKAIPLAMGAGDDAKRFIDLMVSSQTGSGKTAA 100
Query: 55 FMLPALHKF----------------------ASSKNKIPVMKKNLNQNNNKIYTHKERLR 92
F+LP LH A P K + N +
Sbjct: 101 FLLPVLHTLIQQQAEAEAEERAAFERAVAEAAVRGEPAPKRAKRKDPTNAR--------N 152
Query: 93 FKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEIL 152
FK A P L+L PTRELA QV + + ++ +++GGMPY Q+ L +N ++
Sbjct: 153 FKAATPGALILCPTRELAQQVAHDAIDLVKHCRGLRVANVVGGMPYQLQIAKL-QNANLV 211
Query: 153 LATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSAT 212
+ATPGRL+D S +I +Q LV+DEADRMLD+GF +D+ ++ T +QTM+FSAT
Sbjct: 212 VATPGRLLDLQRSMQIKLDKVQFLVVDEADRMLDLGFSDDLAELNQLTSQRKQTMMFSAT 271
Query: 213 LDGIVGNMAENITKDPLI----LKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKR 268
+ +A + D + ++S ++K NI Q + + D+ HK +LLD+ LRD
Sbjct: 272 FAPRIQQLAMRVMHDGGASVQKVTIDSPQEKHANIKQMLYWADNAQHKRKLLDHWLRDTT 331
Query: 269 VGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDV 328
+ QA+VF +T+ + D +A+ L GF A LHG L Q RNR L LR G+++ILVATDV
Sbjct: 332 INQAIVFASTQVECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRAGQVQILVATDV 391
Query: 329 AARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFT 388
AARGIDVP ITHVFN+ LP EDY HRIGRTGRAGR+G A++ +R I IE ++
Sbjct: 392 AARGIDVPTITHVFNFGLPMKAEDYTHRIGRTGRAGRDGLAITFAEFRDRRKIYDIESYS 451
Query: 389 KQQIPIEVINGFEPKKR 405
+QQ +V+ G EP +R
Sbjct: 452 RQQFKADVVPGMEPSQR 468
>gi|113954719|ref|YP_730508.1| DNA and RNA helicase [Synechococcus sp. CC9311]
gi|113882070|gb|ABI47028.1| DNA and RNA helicase [Synechococcus sp. CC9311]
Length = 426
Score = 317 bits (812), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 170/401 (42%), Positives = 242/401 (60%), Gaps = 26/401 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F S+GL + +LKAL + GYT P+ +Q QAIPA ISGRD++ ++QTG+GKTA F LP L
Sbjct: 16 GFDSLGLSQPLLKALQEKGYTAPSPIQLQAIPAVISGRDVMAAAQTGTGKTAGFTLPMLE 75
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ N ++ Q R LVLTPTRELA QV A+ Y
Sbjct: 76 RL------------NHGARPGRL------------QIRALVLTPTRELAAQVLASVREYS 111
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
Y++ + + GG+ Q+Q L + ++L+ATPGRL+D + G + F ++ LVLDEA
Sbjct: 112 KYLQLTSDV-VFGGVKINPQIQRLQKGVDVLVATPGRLLDLLQQGAVRFDRVEFLVLDEA 170
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGFI+DI +++ P RQT++FSAT + +A + P+ ++V + +
Sbjct: 171 DRMLDMGFIHDIRRVISRLPDRRQTLMFSATFSAPIRKLATGLLDHPVQIQVAPANQTVR 230
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
++ Q ++ D+ K LL +L+R Q +VF+ TK A+ + DRL+ G LAA +HG
Sbjct: 231 SVEQ-VVHPCDMARKVDLLSHLIRSGEWLQVLVFSRTKHGANRVVDRLSQQGLLAAAIHG 289
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ Q AR R L+ + G +++LVATD+AARGID+ + HV N DLP EDYVHRIGRTG
Sbjct: 290 NKSQGARTRALQGFKDGSVRVLVATDIAARGIDIQQLPHVVNLDLPNVAEDYVHRIGRTG 349
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
RAG G A+SLV E + +K IER T + + E + GFEP
Sbjct: 350 RAGETGHAISLVAAEEALLLKAIERLTGESLRRENVPGFEP 390
>gi|365092214|ref|ZP_09329362.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
NO-1]
gi|363415338|gb|EHL22465.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
NO-1]
Length = 625
Score = 317 bits (812), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 181/435 (41%), Positives = 255/435 (58%), Gaps = 38/435 (8%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAI-SGRD------LIVSSQTGSGKTAA 54
F +GL +++A+ +GYT+PT VQ +AIP A+ SG D L+VSSQTGSGKTAA
Sbjct: 47 GFIELGLAPELVQAVADLGYTQPTSVQLKAIPLAMGSGNDSTKFIDLMVSSQTGSGKTAA 106
Query: 55 FMLPALHKFASSKNKI--------------------PVMKKNLNQNNNKIYTHKERLRFK 94
F+LP LH + + P K+ ++ FK
Sbjct: 107 FLLPVLHTLINQQAAAEAEERAAFERAVAEAAARGEPAPKRAKRKDPTSSRN------FK 160
Query: 95 PAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLA 154
A P L+L PTRELA QV + + ++ +++GGMPY Q+ L +N ++++A
Sbjct: 161 AATPGALILCPTRELAQQVAHDAIDLVKHCRGLRVANVVGGMPYQLQIAKL-QNADLVVA 219
Query: 155 TPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLD 214
TPGRL+D S +I +Q LV+DEADRMLD+GF +D+ ++ T +QTM+FSAT
Sbjct: 220 TPGRLLDLQRSMQIKLDKVQFLVVDEADRMLDLGFSDDLAELNQLTAQRKQTMMFSATFA 279
Query: 215 GIVGNMAENITKDP----LILKVNSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVG 270
+ +A + D + ++S ++K NI Q + + D+ HK ++LD+ LRD +
Sbjct: 280 PRIQQLAMRVMHDGGSSVQKVTIDSPQEKHANIKQVLYWADNAQHKRKMLDHWLRDTTIN 339
Query: 271 QAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAA 330
QA+VF +T+ + D +A+ L GF A LHG L Q RNR L LR G+++ILVATDVAA
Sbjct: 340 QAIVFASTQVECDGLANDLQQEGFSAVALHGALSQGLRNRRLMALRAGQVQILVATDVAA 399
Query: 331 RGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQ 390
RGIDVP ITHVFN+ LP EDY HRIGRTGRAGR+G A++ +R I IE +++Q
Sbjct: 400 RGIDVPTITHVFNFGLPMKAEDYTHRIGRTGRAGRDGLAITFAEFRDRRKIYDIESYSRQ 459
Query: 391 QIPIEVINGFEPKKR 405
Q EVI G EP +R
Sbjct: 460 QFKAEVIPGMEPSQR 474
>gi|422603815|ref|ZP_16675833.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv. mori str.
301020]
gi|330886235|gb|EGH20136.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv. mori str.
301020]
Length = 625
Score = 317 bits (812), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 174/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N +P + R P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERLFP--NGVPDKSQ----------------RHGPRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KLYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + + HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRVSRLA-ANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++I+VATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|229593097|ref|YP_002875216.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
gi|229364963|emb|CAY53082.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
Length = 628
Score = 317 bits (811), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 250/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N + +K H P QPR+LVLTPTRELA QV + +
Sbjct: 61 ERLFP------------NGHPDKSQRHG------PRQPRVLVLTPTRELAAQVH---DSF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KLYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + +A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSQDITALAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAASHKRALLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGSVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|186683738|ref|YP_001866934.1| DEAD/DEAH box helicase [Nostoc punctiforme PCC 73102]
gi|186466190|gb|ACC81991.1| DEAD/DEAH box helicase domain protein [Nostoc punctiforme PCC
73102]
Length = 443
Score = 317 bits (811), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 173/402 (43%), Positives = 247/402 (61%), Gaps = 21/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
MNF ++GL +++A+ + GYT+PT +Q QAIPA +SG DL+ +QTG+GKTA+F LP L
Sbjct: 1 MNFSTLGLSNEIIRAVTERGYTEPTPIQRQAIPAVLSGSDLLAGAQTGTGKTASFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ +S KN K+ ++ ++P R L+LTPTRELA QV + Y
Sbjct: 61 HRLSSEKNV-------------KVTSNG----YRPI--RALILTPTRELAAQVEESVREY 101
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y++ + ++ + GG+ Q Q L +IL+ATPGRL+DH+ G +N SH+++LVLDE
Sbjct: 102 GKYLQ-LNSMVMFGGVGINLQKQRLKNRVDILVATPGRLLDHVQQGTLNLSHIEVLVLDE 160
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI +I+ P RQ +LF AT + +A + +P +++V
Sbjct: 161 ADRMLDMGFIHDIRRILAILPKQRQNLLFFATFSDKIKALAAGLLNNPKMIEVARRNVTA 220
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q I VD K +LL +L+R Q +VFT TK AD + +L A +H
Sbjct: 221 ETIAQKIYQVDRD-KKRQLLAHLIRRDNWYQVLVFTRTKYGADRLVKQLGEDRIQALAIH 279
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q R L + G +++LVATD+AARG+D+ + HV N+DLP PEDYVHRIGRT
Sbjct: 280 GNKSQPVRTNALAKFKNGSLQVLVATDIAARGLDISELPHVVNFDLPNVPEDYVHRIGRT 339
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG +G AVSLV E + IE+ +Q++P EV+ GF P
Sbjct: 340 GRAGASGEAVSLVCVDEYSLLTDIEKLIEQRLPREVVAGFGP 381
>gi|149927779|ref|ZP_01916031.1| putative ATP-dependent RNA helicase [Limnobacter sp. MED105]
gi|149823605|gb|EDM82835.1| putative ATP-dependent RNA helicase [Limnobacter sp. MED105]
Length = 617
Score = 317 bits (811), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 173/403 (42%), Positives = 246/403 (61%), Gaps = 22/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL +L+AL + T PT VQ++ +P G DL+VSSQTGSGKT F+LP +
Sbjct: 1 MSFDDMGLAAPLLQALNALNITAPTLVQQEVVPLGKDGGDLMVSSQTGSGKTFGFLLPVM 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ + + + E L A P LVL PTRELA QV+
Sbjct: 61 HRMMTGEQ-----------------SPMEML----AGPECLVLCPTRELAQQVSQDAINL 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
+ K ++ +++GGMPY +QM L R I++ TPGRL+D GK+N S + L++DE
Sbjct: 100 VKFTKGVRVATVVGGMPYGKQMASL-RGARIVVGTPGRLLDLAQQGKLNLSTVTTLIVDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLD+GF D+E I QT++FSAT + +AENI +P +++ + +
Sbjct: 159 ADRMLDLGFSEDLEAIDQLCGNRIQTLMFSATFAKRIIGLAENIMNNPKRIEMAAQNEAN 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+I Q +++ D+ HK +LL++ L + QAVVFT+T+ DA+ +A L G A LH
Sbjct: 219 TDIAQKLMWADNRGHKRKLLNHWLEHPDMVQAVVFTSTQIDAENLARDLADEGVRACALH 278
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G + Q RNR L ++R+G IK+LVATDVAARG+DVPAI+HV NY +P EDYVHRIGRT
Sbjct: 279 GGMPQVVRNRRLASVRKGDIKVLVATDVAARGLDVPAISHVINYGMPMKSEDYVHRIGRT 338
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPK 403
GRAGR+G AV+L + ++++ IERF +IP E + G EP+
Sbjct: 339 GRAGRSGVAVTLAEACDIISVRGIERFINSRIPEEQVEGLEPR 381
>gi|390941064|ref|YP_006404801.1| DNA/RNA helicase [Sulfurospirillum barnesii SES-3]
gi|390194171|gb|AFL69226.1| DNA/RNA helicase, superfamily II [Sulfurospirillum barnesii SES-3]
Length = 417
Score = 317 bits (811), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 174/408 (42%), Positives = 246/408 (60%), Gaps = 25/408 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F + L+ +LKA+ + GYT PT VQE+AIP + GRD++ +QTG+GKTA F LP L
Sbjct: 1 MLFSDLNLNASLLKAVQEEGYTTPTPVQEKAIPFILQGRDMLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
++ + K R + KPA R+L+LTPTRELA QV + + Y
Sbjct: 61 ----------------------ELLSAKPRNKAKPAL-RVLILTPTRELAAQVGESVQTY 97
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ K+ I GG+ Q+Q L +IL+ATPGRL+DH++ G IN + VLDE
Sbjct: 98 GKYLP-FKSAVIFGGVGIHPQIQTLKNGVDILVATPGRLLDHVSQGTINLKEIDTFVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI K++ P RQ +LFSAT + + E+I K+P +++V
Sbjct: 157 ADRMLDMGFIKDIRKVIALLPSKRQNLLFSATYSDEIKKLCESILKNPAVVEVARRNTSS 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q ++ VD K LL L+++++ Q +VFT TK A+ +++ LN G ++ +H
Sbjct: 217 ELVNQRVIIVD-CKRKTALLGKLIQEQKWEQVLVFTRTKHHANKVSEYLNKIGISSSAIH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + L + + G IK+LVATD+AARG+D+ + HV N +LP EDYVHRIGRT
Sbjct: 276 GNKSQGARTKALADFKGGSIKVLVATDIAARGLDIDQLPHVVNLELPNIAEDYVHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
GRAG NG A+SLV E +K IE+ K+ E+I GFEP I+
Sbjct: 336 GRAGNNGEAISLVCVDEFEYLKGIEKLIKRSFEHEIIEGFEPDPSIKA 383
>gi|329115283|ref|ZP_08244038.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
gi|326695726|gb|EGE47412.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
Length = 488
Score = 317 bits (811), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 167/392 (42%), Positives = 242/392 (61%), Gaps = 24/392 (6%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F + L +LKAL + GY PT +QE++IP + GRDL+ +QTG+GKTA+F LP L
Sbjct: 52 FSDLALAPPLLKALAEQGYDTPTPIQERSIPYLLQGRDLLGLAQTGTGKTASFALPILEH 111
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
+ KN N P QPR+LVL PTREL Q++ + + Y
Sbjct: 112 ----------LIKNPRANT-------------PKQPRVLVLAPTRELVAQISDSFKAYAR 148
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK +A+ + GG+ RQ++ + R ++L+A PGRL+D M G I+ S L+ILVLDEAD
Sbjct: 149 HMKFTQAV-VFGGVGQGRQVEAMRRGVDVLVAAPGRLLDLMGQGFIDLSGLEILVLDEAD 207
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLDMGF+ DI +I+ P RQT+LFSAT+ + ++A ++ DP ++V
Sbjct: 208 RMLDMGFVRDIRRIMTFVPEQRQTLLFSATMPRSIEDLAASLLNDPARVEVAPPSSTVDR 267
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
I Q+++FV+ K L ++ +V +AVVFT K +A+ +A+ LN + +A +HG+
Sbjct: 268 IQQAVMFVNGAGDKRDALLNMVESPKVSRAVVFTLMKHEANKVAEFLNKNNVVAEAIHGN 327
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
Q AR R ++ R G +K+LVATD+AARGIDV ++HVFNYDLP PE YVHRIGRT R
Sbjct: 328 KSQGARERAMKGFRSGSVKVLVATDIAARGIDVDDVSHVFNYDLPNVPESYVHRIGRTAR 387
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
AGR+G+AVS + +R ++ IER + +P+
Sbjct: 388 AGRDGWAVSFCDAEQRAWLRDIERTIGKTVPV 419
>gi|429094723|ref|ZP_19157248.1| ATP-dependent RNA helicase RhlE [Cronobacter dublinensis 1210]
gi|426740207|emb|CCJ83361.1| ATP-dependent RNA helicase RhlE [Cronobacter dublinensis 1210]
Length = 479
Score = 317 bits (811), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 174/406 (42%), Positives = 242/406 (59%), Gaps = 24/406 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q QAIP +SG+DL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ +S+ H + R P R L+LTPTRELA QV Y
Sbjct: 61 QRLTTSQ------------------PHPQGRR--PV--RALILTPTRELAAQVGENVREY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + +++LVLDE
Sbjct: 99 SKYLD-IRSLVVFGGVSINPQMMKLRGGVDVLIATPGRLLDLEHQNAVKLDQVEVLVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + ++P + V
Sbjct: 158 ADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLRNPEEVAVARRNTAS 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+TQ + FVD K LL YL+ D Q +VFT TK A+ +A++LN G AA +H
Sbjct: 218 GQVTQHVHFVDK-KRKRELLSYLIGDGNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G I++LVATD+AARGID+ + HV NY+LP PEDYVHRIGRT
Sbjct: 277 GNKSQGARTRALADFKTGGIRVLVATDIAARGIDIEELPHVVNYELPNVPEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
GRA G A+SLV E ++ IER K++IP I G+EP I
Sbjct: 337 GRAAATGEALSLVCVDEHKLLRDIERVLKREIPRMAIPGYEPDPSI 382
>gi|217976993|ref|YP_002361140.1| DEAD/DEAH box helicase [Methylocella silvestris BL2]
gi|217502369|gb|ACK49778.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
Length = 448
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 162/378 (42%), Positives = 236/378 (62%), Gaps = 25/378 (6%)
Query: 18 KVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPVMKKNL 77
K+GYTKPT +Q QAIP ++GRDL+ +QTG+GKTAAF LP LH+ A++ + P
Sbjct: 19 KLGYTKPTPIQAQAIPHVLTGRDLVGIAQTGTGKTAAFALPILHQLAANPQQPPRGGA-- 76
Query: 78 NQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISILGGMP 137
R+LVL+PTRELA Q+ + G M+ A+ + GG+P
Sbjct: 77 ---------------------RVLVLSPTRELASQIAESFRSLGSEMQLSVAV-VFGGVP 114
Query: 138 YLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFINDIEKIV 197
+ Q++ L R ++L+ATPGRL+DH++SG + + VLDE D+MLD+GF+ I +IV
Sbjct: 115 HGAQIRALQRGLDVLVATPGRLVDHLDSGVAHLGKTEFFVLDEVDQMLDLGFVKAIHRIV 174
Query: 198 DATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDDILHKN 257
P RQ + FSAT+ + +A ++ K+P + V + K + Q +LFV+ ++
Sbjct: 175 KTLPQRRQNLFFSATMPTEIAKLAADLLKNPAQVSVTPVAKTADRVEQQVLFVETHRKRD 234
Query: 258 RLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTLENLRR 317
L+D LL D ++ + ++FT TKR AD +A L + G AA +HG+ Q+ R R+L + R
Sbjct: 235 ILVD-LLADAKMARTIIFTRTKRGADKVAQHLEVCGVSAAAIHGNKSQSQRERSLASFRA 293
Query: 318 GRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSLVNHAE 377
GR++ LVATD+AARGIDV +THV N+DLP+ PE YVHRIGRT RAG G A+SL + AE
Sbjct: 294 GRVRALVATDIAARGIDVDGVTHVVNFDLPEVPEAYVHRIGRTARAGAEGVAISLCDGAE 353
Query: 378 RMNIKKIERFTKQQIPIE 395
R ++ IER T+ ++P E
Sbjct: 354 RDLLRNIERLTRLRLPTE 371
>gi|77461504|ref|YP_351011.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens Pf0-1]
gi|77385507|gb|ABA77020.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens Pf0-1]
Length = 622
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 174/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEDAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ P + +Q R P QPR+LVLTPTRELA QV + +
Sbjct: 61 ERL------FPNGHPDKSQ------------RHGPRQPRVLVLTPTRELAAQVH---DSF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+Y + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KIYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLPASHKRALLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|319957241|ref|YP_004168504.1| dead/deah box helicase domain-containing protein [Nitratifractor
salsuginis DSM 16511]
gi|319419645|gb|ADV46755.1| DEAD/DEAH box helicase domain protein [Nitratifractor salsuginis
DSM 16511]
Length = 421
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 175/406 (43%), Positives = 249/406 (61%), Gaps = 25/406 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F ++GL +LKA+ GYT PT +Q QAIPA + G D++ ++QTG+GKTA F LP L
Sbjct: 7 TFDTLGLDPAILKAVSAEGYTTPTPIQAQAIPAVLEGHDVLAAAQTGTGKTAGFTLPLLE 66
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ L QN ++ K Q R LVLTPTRELA QV + YG
Sbjct: 67 R--------------LIQNPRQM---------KARQVRALVLTPTRELAAQVAESVRTYG 103
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+K I++ + GG+ Q + ++R EI++ATPGRL+D N I+ S L+ L+LDEA
Sbjct: 104 KNLK-IRSTVVYGGVGIEPQKRAIARGCEIVIATPGRLLDLANQRAIDLSALETLILDEA 162
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGFI+DI+KI+ TP RQT+LFSAT + +A + KDP++++V +
Sbjct: 163 DRMLDMGFIHDIKKIIAQTPKERQTLLFSATFSPEIKRLAAGMLKDPVLIEVARQNTTAE 222
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
++Q + VD K LL ++++K Q +VFT TK A+ ++ +L+ +G + +HG
Sbjct: 223 QVSQKVHHVDR-HRKQELLIRMIKEKGWKQVLVFTRTKHGANKLSKQLDQAGIPSEAIHG 281
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ QNAR + L++ + R+++LVATD+AARGID+ A+ HV N++LP EDYVHRIGRTG
Sbjct: 282 NKTQNARMKALKSFKENRVRVLVATDIAARGIDIAALPHVVNFELPNVAEDYVHRIGRTG 341
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIR 407
RAG G A+SLV E ++ IERF K +IP GFE IR
Sbjct: 342 RAGSEGEALSLVCVDEHQLLRNIERFIKAEIPKIATPGFEVDPSIR 387
>gi|340794810|ref|YP_004760273.1| hypothetical protein CVAR_1849 [Corynebacterium variabile DSM
44702]
gi|340534720|gb|AEK37200.1| hypothetical protein CVAR_1849 [Corynebacterium variabile DSM
44702]
Length = 732
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 171/396 (43%), Positives = 236/396 (59%), Gaps = 34/396 (8%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F +GL + +L A+ KVGY P+ +Q IPA + G D++ +QTG+GKTAAF LPAL +
Sbjct: 71 FAGLGLPDRILAAVEKVGYVTPSPIQAATIPALMDGHDVVGLAQTGTGKTAAFALPALSR 130
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
+++ P++LVL PTRELALQ A E +
Sbjct: 131 LDTTER----------------------------HPQVLVLAPTRELALQSADAFESFAS 162
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
++ + + I GG PY Q+ L R ++++ TPGR+IDH+ G ++ SHL+ LVLDEAD
Sbjct: 163 HIGGVSILPIYGGAPYGAQLSGLRRGAQVIVGTPGRIIDHLEKGSLDLSHLRFLVLDEAD 222
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
ML+MGF D+E+I+ TP +RQ LFSAT+ + +++ DP V S ++ N
Sbjct: 223 EMLNMGFQEDVERILADTPDSRQVALFSATMPSAIRRLSKQYLNDPQEYTVKSEQRTGDN 282
Query: 243 ITQSILFVDDILHKNRL--LDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
ITQ L V H+N+L L +L ++F TK D + +AD+L GF AA ++
Sbjct: 283 ITQDYLMVS---HRNKLDALTRILEVTEFDAMIIFVRTKSDTEELADKLRARGFEAAAIN 339
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+ QN R RT++ L+ GR+ ILVATDVAARG+DV ITHVFNYD+P+ E YVHRIGRT
Sbjct: 340 GDIAQNQRERTVDQLKDGRLDILVATDVAARGLDVDRITHVFNYDIPRDTESYVHRIGRT 399
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEV 396
GRAGR G A+ V ER +K IER TK P E+
Sbjct: 400 GRAGRTGRAILFVTPRERRLLKNIERATKSH-PNEI 434
>gi|146284249|ref|YP_001174402.1| DEAD/DEAH box helicase [Pseudomonas stutzeri A1501]
gi|386022659|ref|YP_005940684.1| DEAD/DEAH box helicase [Pseudomonas stutzeri DSM 4166]
gi|145572454|gb|ABP81560.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas stutzeri
A1501]
gi|327482632|gb|AEA85942.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri DSM 4166]
Length = 609
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 174/402 (43%), Positives = 248/402 (61%), Gaps = 22/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E + A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERL-RFKPAQPRMLVLTPTRELALQVTAATER 119
H +R R+ P QPR+LVLTPTRELA QV + +
Sbjct: 61 ELLFPG-------------------GHPDREHRYGPKQPRVLVLTPTRELAAQVHDSFKV 101
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y + +K+ I GG+ Q+Q +++ ++L+A PGRL+D N I+ SH++ILVLD
Sbjct: 102 YARDLP-LKSAVIFGGVGMNPQIQAVAKGIDVLVACPGRLLDLANQKAIDLSHVEILVLD 160
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+D++K++ P RQ +LFSAT + ++A + ++P ++V
Sbjct: 161 EADRMLDMGFIHDVKKVLAKLPAKRQNLLFSATFSKDITDLAAKLLQNPERIEVTPPNTT 220
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+ I Q + V HK LL +L+ Q +VFT TK A+ +A+ L G AA +
Sbjct: 221 VERIEQRVFRVASS-HKRALLAHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAI 279
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HG+ QNAR + L + + +++ILVATD+AARG+D+ + HV N++LP EDYVHRIGR
Sbjct: 280 HGNKSQNARTKALADFKANQVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGR 339
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
TGRAGR+G A+SLV E +K IER TKQ+IP + GF+
Sbjct: 340 TGRAGRSGEAISLVAPDEEKLLKGIERMTKQRIPDGDLQGFD 381
>gi|398941307|ref|ZP_10669766.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM41(2012)]
gi|398161776|gb|EJM49996.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM41(2012)]
Length = 628
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N + +K H P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERLFP------------NGHPDKSQRHG------PRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+Y + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KVYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPSKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLPANHKRSLLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGNLMGFD 381
>gi|423093203|ref|ZP_17080999.1| ATP-dependent RNA helicase, putative [Pseudomonas fluorescens
Q2-87]
gi|397882926|gb|EJK99413.1| ATP-dependent RNA helicase, putative [Pseudomonas fluorescens
Q2-87]
Length = 621
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 174/403 (43%), Positives = 250/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E ++ A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N + +K H P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERLFP------------NGHPDKSQRHG------PRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+Y + +K +S I GG+ Q+Q ++R ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KIYARDLKFVSACIFGGVGMNPQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLPASHKRALLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|422643453|ref|ZP_16706592.1| helicase [Pseudomonas syringae pv. maculicola str. ES4326]
gi|330957006|gb|EGH57266.1| helicase [Pseudomonas syringae pv. maculicola str. ES4326]
Length = 630
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 172/403 (42%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N +P + R P QPR+LVLTPTRELA QV + +
Sbjct: 61 ERLFP--NGVPDKSQ----------------RHGPRQPRVLVLTPTRELAAQVH---DSF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q ++R ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KLYARDLKFVSACIFGGVGTNPQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + +A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSNDITALAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q ++FT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLPANHKRSLLAHLITVGAWEQVLIFTRTKHGANRLAEYLDKHGLAAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++I+VATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER T+Q+IP + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTRQKIPDGDLMGFD 381
>gi|168183325|ref|ZP_02617989.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum Bf]
gi|182673470|gb|EDT85431.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum Bf]
Length = 425
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 168/394 (42%), Positives = 243/394 (61%), Gaps = 24/394 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+++ + + + KAL + GY K T +QE++IP + G+DL+ +QTG+GKTAAF +P L
Sbjct: 1 MLFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ K K N N P R LVL PTRELA+Q+ + E Y
Sbjct: 61 QNLSKDK------KANKN----------------PRPIRALVLAPTRELAIQIAESFECY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ +K+ I GG+ Q ++L +IL+ATPGR++D N I+ +++ VLDE
Sbjct: 99 GKYIN-LKSAVIFGGVSQNPQTKVLREGVDILIATPGRMLDLFNQKYIDLRNIEFFVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMG I+D++KI+ P RQ +LFSAT+ + + ++I KDP+ ++V +
Sbjct: 158 ADRMLDMGMIHDVKKIISKLPKIRQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTV 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
ITQ + V K LL +LL+DK + A+VF+ TKR A++IA L +G A +H
Sbjct: 218 DTITQEVYHVRK-KQKRALLKHLLKDKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ QNAR R L N + G+I++LVATD+AARGIDV ++HVFNY+LP PE YVHRIGRT
Sbjct: 277 GNKSQNARQRALNNFKEGKIRVLVATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
GRAG G A+S + E ++K IE+ ++IP+
Sbjct: 337 GRAGAKGVAISFCDIEETKSLKAIEKLINKEIPV 370
>gi|381160579|ref|ZP_09869811.1| DNA/RNA helicase, superfamily II [Thiorhodovibrio sp. 970]
gi|380878643|gb|EIC20735.1| DNA/RNA helicase, superfamily II [Thiorhodovibrio sp. 970]
Length = 438
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 170/404 (42%), Positives = 242/404 (59%), Gaps = 23/404 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL +L+A+ GYT+PT +Q QAIPA ++GRD++ +QTG+GKTAAF LP L
Sbjct: 1 MSFSDLGLSAKLLRAVTARGYTEPTPIQNQAIPAILAGRDVMAGAQTGTGKTAAFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + S + + QPR LVLTPTRELA QV + Y
Sbjct: 61 QRLSQSGQQASA---------------------RSPQPRALVLTPTRELAAQVGESVSAY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ ++A+ I GG+ Q+ L R +IL+ATPGRL+DH+ G ++ H+++LVLDE
Sbjct: 100 GQYLP-LRALQIFGGVGMGPQITALRRGVDILVATPGRLLDHVGQGNLDLGHVELLVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF+ I +++ P RQ +LFSAT + +A + DPL ++V
Sbjct: 159 ADRMLDMGFMPAIRRVLKLLPARRQNLLFSATYSRDIEQLATGLLNDPLRIEVARRNTAA 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q V+ HK LL +L+ Q +VFT TK A+ +A +L G AA +H
Sbjct: 219 ETVRQLAHPVERG-HKRALLSHLIASGGWDQTLVFTRTKHGANRLAQQLERDGISAAAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + +RG ++ LVATD+AARG+D+ + HV N++LP EDYVHRIGRT
Sbjct: 278 GNKSQSARTRALADFKRGAVRTLVATDIAARGLDIERLPHVVNFELPNVAEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRAG +G AVSLV+ E + IER ++I + I GF +K
Sbjct: 338 GRAGESGTAVSLVSPEEGSLLAGIERLLGRRIESQAIPGFSDRK 381
>gi|254481835|ref|ZP_05095078.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
HTCC2148]
gi|214037964|gb|EEB78628.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
HTCC2148]
Length = 435
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 169/406 (41%), Positives = 248/406 (61%), Gaps = 26/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F +GL +L+A+ K GY++P+ +Q +AIPA +SG+D++ ++QTG+GKTAAF LP L
Sbjct: 1 MTFDQLGLSSALLRAIEKKGYSEPSPIQAKAIPAVLSGKDVMAAAQTGTGKTAAFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ +S P+ KP + R L+LTPTRELA QV + Y
Sbjct: 61 QRLNASA---PI---------------------KPHRIRALILTPTRELAAQVAQSVSTY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
GL+ +K+ + GG+ Q+ L R +IL+ATPGRL+D G+++F L+ILVLDE
Sbjct: 97 GLHTP-LKSAVVFGGVKINSQIAQLRRGVDILIATPGRLLDLHGQGEVDFGELEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI +I+ P RQ +LFSAT + + + +DP+ ++V S
Sbjct: 156 ADRMLDMGFIHDIRRILKLLPAERQNLLFSATFAAEIRELTKKFLQDPIEVEVASRNATA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ Q + VD K LL L+ +K Q +VF+ TK A+ +A +L+ +G A +H
Sbjct: 216 DKVEQWVYPVDK-KRKGALLRELVEEKCWTQVLVFSRTKHGANRLAQQLDKAGIEATAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R LE+ + GR+++LVATD+AARG+D+ + V N+DLP +DYVHRIGRT
Sbjct: 275 GNKSQGARTRALEDFKSGRLRVLVATDIAARGLDIAQLPQVVNFDLPNVAQDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
GRAG +G A SLV E + IE+ ++ +P E I+GFEP+ +
Sbjct: 335 GRAGASGKAYSLVCADEIKQLNDIEQLIQRHLPREYIDGFEPEHEV 380
>gi|347821466|ref|ZP_08874900.1| DEAD/DEAH box helicase domain-containing protein, partial
[Verminephrobacter aporrectodeae subsp. tuberculatae
At4]
Length = 464
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 240/403 (59%), Gaps = 22/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F + L +LKA+ + GY PT +Q QAIPA + G DL+ +QTG+GKTAAF LP L
Sbjct: 1 MTFDELNLAPAILKAVHETGYETPTPIQAQAIPAVLQGHDLLAGAQTGTGKTAAFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ + S R +F R LVLTPTRELA QV + Y
Sbjct: 61 HRLSLST--------------------APRNKFGGKGIRALVLTPTRELAAQVEESVREY 100
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ I + + GG+ Q++ + R +IL+ATPGRL+D G ++ S +Q+LVLDE
Sbjct: 101 GKYLD-IDSTVVFGGVGMNPQIERMKRGVDILVATPGRLLDLQQQGFVDLSAVQVLVLDE 159
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+D++K++ P RQ++LFSAT + +A + KDP ++V
Sbjct: 160 ADRMLDMGFIHDVKKLLALVPRQRQSLLFSATFSDEIRELASGLLKDPQSIQVTPRNTTV 219
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q I V K LL +++ + Q +VFT TK A+ +A+ L+ +G A LH
Sbjct: 220 QRIAQVIHPVGRGRKKQVLL-HIIEQNQWSQVLVFTRTKFGANNVAEFLSKNGVQAMALH 278
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + L + G ++ LVATD+AARGID+ + HV NY++P PEDYVHRIGRT
Sbjct: 279 GNKSQGARTQALSGFKSGTLRALVATDIAARGIDIDELPHVVNYEIPNLPEDYVHRIGRT 338
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPK 403
GRAG G AVSLV E + IERFT QQIP+++I GF P+
Sbjct: 339 GRAGATGQAVSLVCMDEEGFMMAIERFTGQQIPVQLIEGFGPE 381
>gi|414162815|ref|ZP_11419062.1| hypothetical protein HMPREF9697_00963 [Afipia felis ATCC 53690]
gi|410880595|gb|EKS28435.1| hypothetical protein HMPREF9697_00963 [Afipia felis ATCC 53690]
Length = 473
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 172/395 (43%), Positives = 246/395 (62%), Gaps = 28/395 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F ++GL + VL A+ GYT PT +QEQAIP ++ RD++ +QTG+GKTAAF+LP L
Sbjct: 1 MSFSNLGLSDKVLAAVAATGYTSPTPIQEQAIPHVLAHRDVLGIAQTGTGKTAAFVLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
T E+ R + PR L+L PTRELA QV +RY
Sbjct: 61 -------------------------TLLEKGRARARMPRTLILEPTRELAAQVKENFDRY 95
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G+ +K+ ++GG+ + Q L R ++L+ATPGRL+DH GK+ + +++LV+DE
Sbjct: 96 GVG-QKLNVALLIGGVSFGDQDAKLMRGVDVLIATPGRLLDHTERGKLLMTGVELLVIDE 154
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DIE+I P TRQT+ F+AT+ + + E +P+ ++V+
Sbjct: 155 ADRMLDMGFIPDIERICKLVPFTRQTLFFTATMPPEIRRITETFLHNPVKVEVSKPASTA 214
Query: 241 KNITQSILFVDDILHKNR-LLDYLLRD-KRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+TQS + H+ R LL LLR+ K + A++F KR+ I+ L GF AA
Sbjct: 215 VTVTQSQISTGKEPHEKRELLRQLLRNAKDLKNAIIFCNRKREVAILHKSLQKHGFGAAA 274
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
LHGD+ Q+AR +LE R+G + +LVA+DVAARG+D+P ++HVFN+D+P P+DYVHRIG
Sbjct: 275 LHGDMDQSARMASLEQFRKGELPLLVASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRIG 334
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIP 393
RTGRAGR G AVS+V+ A++ +I IE+ Q IP
Sbjct: 335 RTGRAGRLGTAVSIVSPADQKSIMAIEKLIGQSIP 369
>gi|170759986|ref|YP_001785987.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A3 str. Loch
Maree]
gi|169406975|gb|ACA55386.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A3 str. Loch
Maree]
Length = 425
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 166/394 (42%), Positives = 241/394 (61%), Gaps = 24/394 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+++ + + + KAL + GY K T +QE++IP + GRDL+ +QTG+GKTAAF +P L
Sbjct: 1 MLFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGRDLVGCAQTGTGKTAAFAVPVL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ K ++ P R LVL PTRELA+Q+ + E Y
Sbjct: 61 QNLSKDK----------------------KVNKDPRTIRALVLAPTRELAIQIGESFECY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ +K+ I GG+ Q + L +IL+ATPGR++D N I+ +++ VLDE
Sbjct: 99 GKYIN-LKSAVIFGGVSQNPQTKALREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMG I+D++KI+ P RQ +LFSAT+ + + ++I KDP+ ++V +
Sbjct: 158 ADRMLDMGMIHDVKKIISKLPKARQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTV 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
ITQ + V K LL +LL+DK + A+VF+ TKR A++IA L +G A +H
Sbjct: 218 DTITQEVYHVRK-KQKRALLKHLLKDKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ QNAR R L N + G+I++LVATD+AARGIDV ++HVFNY+LP PE YVHRIGRT
Sbjct: 277 GNKSQNARQRALNNFKEGKIRVLVATDIAARGIDVNELSHVFNYNLPDIPETYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
GRAG G A+S + E ++K IE+ ++IP+
Sbjct: 337 GRAGAKGVAISFCDIEETKSLKAIEKLINKEIPV 370
>gi|89900953|ref|YP_523424.1| DEAD/DEAH box helicase-like protein [Rhodoferax ferrireducens T118]
gi|89345690|gb|ABD69893.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118]
Length = 574
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 174/403 (43%), Positives = 248/403 (61%), Gaps = 22/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+ + L ++KA+++ GY PT +Q QAIPA + G DL+ +QTG+GKTAAF+LP L
Sbjct: 1 MKFEELNLAPAIIKAVLEQGYETPTPIQAQAIPAVLDGHDLLGGAQTGTGKTAAFVLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
HK + S+ R +F R LVLTPTRELA QV + + Y
Sbjct: 61 HKLSQSE--------------------AARNKFGGIGIRALVLTPTRELAAQVEESVQTY 100
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y++ + + I GG+ Q+ + + +IL+ATPGRL+D + G ++ S +QILVLDE
Sbjct: 101 GKYVE-LTSTVIFGGVGMNPQISRVKKGVDILVATPGRLLDLLQQGVLDLSQVQILVLDE 159
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+D++K++ P +Q++LFSAT + +A + K PL ++V
Sbjct: 160 ADRMLDMGFIHDVKKVLAVVPKDKQSLLFSATFSEEIRELAATLLKSPLTIQVTPRNTTV 219
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ ITQ I V K LL ++++++ Q +VFT TK A+ +A+ L SG A LH
Sbjct: 220 QRITQLIHPVGR-GKKKALLAHIVQERNWSQVLVFTRTKFGANNVAEFLTKSGINAMALH 278
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + L + G I+ LVATD+AARGID+ + HV NYD+P EDYVHRIGRT
Sbjct: 279 GNKSQAARTQALAGFKSGDIRALVATDIAARGIDIDDLPHVVNYDIPNVCEDYVHRIGRT 338
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPK 403
GRAG +G AV+LV E ++ IERFTKQ I ++++ GF P+
Sbjct: 339 GRAGADGAAVNLVCLDEEGFMQAIERFTKQDIEVQIVEGFMPE 381
>gi|374366617|ref|ZP_09624693.1| RNA helicase [Cupriavidus basilensis OR16]
gi|373101750|gb|EHP42795.1| RNA helicase [Cupriavidus basilensis OR16]
Length = 577
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 174/402 (43%), Positives = 249/402 (61%), Gaps = 22/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL + +++A+ + GYT PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 11 MSFSELGLSDKLMRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 70
Query: 61 HKFA-SSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
+ SS + P + L P R LVLTPTRELA QV +
Sbjct: 71 QLLSESSAGREPARGQRL-----------------PV--RALVLTPTRELAAQVEESVRN 111
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
YG Y+K ++++ + GG+ Q++ L R +I++ATPGRL+DH++ I+ SH+++LVLD
Sbjct: 112 YGKYLK-LRSMVMFGGVGINPQIEQLKRGVDIVVATPGRLLDHLSQRTIDLSHVEMLVLD 170
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DI KI++ P RQ +LFSAT + +A+ + +P ++V
Sbjct: 171 EADRMLDMGFIHDIRKILNVLPPKRQNLLFSATFSDEIRGLADRLLDNPASIEVARRNTT 230
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+ + Q + VD K LL +L+R+ Q +VFT TK A+ +A++L+ G A +
Sbjct: 231 AETVAQRVYPVDR-ERKRELLAHLVRENDWHQVLVFTRTKHGANRLAEQLDKDGLSALAI 289
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HG+ Q+AR R L + G +++LVATD+AARGID+ + HV NYDLP PEDYVHRIGR
Sbjct: 290 HGNKSQSARTRALTEFKAGTLRLLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGR 349
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
TGRAG G A+SLV E ++ IER K+QI ++ GFE
Sbjct: 350 TGRAGAEGEAISLVCVDEISLMRDIERLIKRQIEQTILPGFE 391
>gi|192362464|ref|YP_001982184.1| Superfamily II DNA and RNA helicase [Cellvibrio japonicus Ueda107]
gi|190688629|gb|ACE86307.1| Superfamily II DNA and RNA helicase [Cellvibrio japonicus Ueda107]
Length = 474
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 172/410 (41%), Positives = 251/410 (61%), Gaps = 26/410 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+S+GL +L+A+ GY+ PT +Q+QAIPA I+G D++ ++QTG+GKTA F LP L
Sbjct: 1 MSFESLGLRADILRAIADEGYSAPTPIQQQAIPAVINGGDILAAAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS-SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
K + K P ++ + R L+LTPTRELA QV +
Sbjct: 61 EKLSQRDPGKTPQGRRPV---------------------RALILTPTRELAAQVHDSVRT 99
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
YG Y++ +++ + GG+ QM L +IL+ATPGRL+D +N + ++ILVLD
Sbjct: 100 YGKYLR-LRSAVVFGGVSINPQMMTLRGGVDILVATPGRLLDLVNQNAVYLQDVEILVLD 158
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DI+K++ P RQ +LFSAT + +A+ + P +++V
Sbjct: 159 EADRMLDMGFIHDIKKVLALLPKQRQNLLFSATFSDDIKALADKLLNQPTLIEVARRNTA 218
Query: 240 QKNITQSILFVDDILHKNR-LLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ ++Q +L VD H+ R LL +L+ Q +VFT TK A+ + ++L G AA
Sbjct: 219 SERVSQRVLPVDR--HRKRELLSHLISGGNWQQVLVFTRTKHGANKLTEQLQDDGISAAA 276
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ Q AR + LE+ + GRI+ L+ATD+AARGID+ + +V NY+LP PEDYVHRIG
Sbjct: 277 IHGNKSQGARTKALEDFKTGRIRALIATDIAARGIDIDQLPYVVNYELPNVPEDYVHRIG 336
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
RTGRA G AVSLV E ++ IE+ K++IP E+I+GFEP I+
Sbjct: 337 RTGRAQAEGEAVSLVCVDEHSFLRDIEKLIKREIPREMISGFEPDPSIKA 386
>gi|84387538|ref|ZP_00990556.1| ATP-dependent RNA helicase RhlE [Vibrio splendidus 12B01]
gi|84377586|gb|EAP94451.1| ATP-dependent RNA helicase RhlE [Vibrio splendidus 12B01]
Length = 531
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 171/402 (42%), Positives = 244/402 (60%), Gaps = 26/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +LKA+ GY KP+ +QE+A+PA ++G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MSFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ K P +++N Q R LVLTPTRELA QV + +Y
Sbjct: 61 EMLS----KGPRVRQN--------------------QVRALVLTPTRELAAQVNGSVVKY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G+ + + + + GG+ QMQ L + ++L+ATPGRL+D N + F L+ILVLDE
Sbjct: 97 GINLP-LTSTVVFGGVKINPQMQKLRKGSDVLVATPGRLLDLYNQNAVRFDQLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ +LFSAT + +A+ + +P+ + V+
Sbjct: 156 ADRMLDMGFIRDIRKILAFLPKKRQNLLFSATFSDDIRGLAKGLVNNPVEISVSPANSTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ QSI VD K+ +L L++D Q +VF+ TK A+ ++ L+ G AAP+H
Sbjct: 216 PTVEQSIYPVDK-KKKSAMLAKLIKDNDWRQVLVFSKTKHGANKLSHFLDEQGISAAPIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + LEN + G++++LVATD+AARGID+P + V N+DLP EDYVHRIGRT
Sbjct: 275 GNKSQGARTKALENFKTGKVRVLVATDIAARGIDIPQLPQVVNFDLPNVSEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G A+SLV E + IER +Q + + GF P
Sbjct: 335 GRAGEVGKAISLVCADEVGELFGIERLIQQVLERRELEGFAP 376
>gi|381166173|ref|ZP_09875390.1| Putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Phaeospirillum molischianum DSM 120]
gi|380684620|emb|CCG40202.1| Putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Phaeospirillum molischianum DSM 120]
Length = 432
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 177/394 (44%), Positives = 245/394 (62%), Gaps = 27/394 (6%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F +GL E +LKAL GYT PT +QEQ+IP ++G D++ +QTG+GKTA+F LP L +
Sbjct: 4 FSDLGLAEPLLKALATEGYTSPTPIQEQSIPHLLAGHDVLGLAQTGTGKTASFALPLLQR 63
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
K R P R+LVLTPTRELA+QV + YG
Sbjct: 64 LEQFKK-----------------------RAMPKSTRVLVLTPTRELAVQVGQSFRTYGS 100
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+ A+ + GG+ + Q++ ++ +IL+ATPGRL+D M+ I ++ LVLDEAD
Sbjct: 101 QYRLRHAL-VFGGVGMVPQIKTMAGGVDILVATPGRLLDLMSQDAIRLDSVEALVLDEAD 159
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATL-DGIVGNMAENITKDPLILKVNSIEKKQK 241
RMLDMGFI I KIV A P +RQT+LFSAT+ D IVG +AE++ P+ ++V + +
Sbjct: 160 RMLDMGFIQPIRKIVAAMPKSRQTVLFSATMPDSIVG-LAESVLHRPVRVEVAPVSSTAE 218
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
I Q ++FVD +K LL +L K VG+A+VFT TK A+ +A+ L+ +G A +HG
Sbjct: 219 KIDQKVMFVDR-ENKRTLLTEILAGKDVGRALVFTRTKHGANRVAEMLDKAGISADAIHG 277
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ Q AR + L + R G+IK LVATD+AARGIDV ITHV NY+LP PE YVHRIGRT
Sbjct: 278 NKSQGARQKALADFRDGKIKALVATDIAARGIDVDGITHVLNYELPNEPESYVHRIGRTA 337
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIE 395
RAG +G AVSL + E ++ IE+ +Q +P++
Sbjct: 338 RAGASGIAVSLCDADEVAYLRAIEKTIRQSVPVD 371
>gi|422680300|ref|ZP_16738572.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
gi|331009646|gb|EGH89702.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
Length = 625
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 174/403 (43%), Positives = 250/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F P L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFAPPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N +P + R P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERLFP--NGVPDKSQ----------------RHGPRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KLYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++I+VATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|395491184|ref|ZP_10422763.1| ATP-dependent RNA helicase [Sphingomonas sp. PAMC 26617]
Length = 427
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 167/386 (43%), Positives = 231/386 (59%), Gaps = 25/386 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F + L L+LKAL + GY PT +Q Q+IP + GRD++ +QTG+GKTAAF LP L
Sbjct: 3 MTFPDLALSPLILKALAEEGYATPTPIQAQSIPLLLEGRDMLGMAQTGTGKTAAFALPLL 62
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ A+ N P K R+LVL PTREL Q+ A E +
Sbjct: 63 HRLAA--NPRPAPKGGA---------------------RILVLAPTRELVSQIAAGFESF 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +K +I GG+ Q+ L +IL+A PGRL+D ++ G + S L+ LVLDE
Sbjct: 100 GRHLS-LKVTTIFGGVSQFHQVAALDAGVDILVAAPGRLLDLVDQGLCDLSALEALVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
AD+MLDMGF IE++V P R T+LFSAT+ + +AE++ DP +++
Sbjct: 159 ADQMLDMGFAKPIERLVATLPKDRHTLLFSATMPKAIAALAESLLTDPASVEIAPPSTTV 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
I QS++F+D K LL+ LLR +GQAVVFT K A+ + + +G A LH
Sbjct: 219 DRIAQSVMFLDAANKKTALLE-LLRTPEIGQAVVFTLQKNIANEVCAFITEAGITAEALH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q R R L+ R G +++LVATD+AARGIDV +THVFN+DLP PE YVHRIGRT
Sbjct: 278 GNKSQGQRERALDAFRAGTVQVLVATDIAARGIDVDTVTHVFNHDLPSLPESYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIER 386
GRAGR+GFA++L + +R + +ER
Sbjct: 338 GRAGRSGFAITLCDAEQRAWLHDVER 363
>gi|416993086|ref|ZP_11938873.1| DEAD/DEAH box helicase domain-containing protein, partial
[Burkholderia sp. TJI49]
gi|325518442|gb|EGC98145.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
TJI49]
Length = 328
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 160/297 (53%), Positives = 217/297 (73%), Gaps = 10/297 (3%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F S+GL ++ AL GY KPT VQ++AIPA I+GRDL+VSS TGSGKTAAFMLPA+
Sbjct: 37 SFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 96
Query: 62 KFASSKNKI---PVMKKNLNQNNNKIYTHKERLRFKP-AQPRMLVLTPTRELALQVTAAT 117
+FA + P + NQ + + R +P A+P +LVLTPTRELA+QVT A
Sbjct: 97 RFAQLQKAQAQQPRAPREPNQGDRRGR------RPQPVARPGLLVLTPTRELAMQVTTAA 150
Query: 118 ERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
YG ++K+++ +SILGG+ Y +Q+ LL++NPEIL+ATPGRL+DH+ G+I+ S L++LV
Sbjct: 151 STYGKHLKRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLV 210
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
LDEADRMLDMGFI DIE IV+ATP +RQTMLFSATLDG +G++ + KDP +++
Sbjct: 211 LDEADRMLDMGFIEDIETIVEATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRL 270
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGF 294
+ + NI Q++ +VDD HK+RLLD+LLRD + QA++FTATK DAD +A RL +GF
Sbjct: 271 ESRANIAQTVHYVDDRDHKDRLLDHLLRDNALDQAIIFTATKIDADQLAGRLADAGF 327
>gi|402483737|gb|AFQ59989.1| RhlE [Photorhabdus luminescens]
Length = 428
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 173/408 (42%), Positives = 249/408 (61%), Gaps = 24/408 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
MNF+S+GL +L+A+ + GY+ PT +Q+QAIP ++G+DL+ S+QTG+GKTA F LP L
Sbjct: 1 MNFESLGLSADILRAIEEQGYSAPTPIQQQAIPVVLAGKDLLASAQTGTGKTAGFTLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N++ I R P R L+LTPTRELA QV Y
Sbjct: 61 QRL----------------NDSSIQVKGRR----PV--RALILTPTRELAAQVGENVRDY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y++ ++++ + GG+ QM L +IL+ATPGRL+D + ++ S ++ILVLDE
Sbjct: 99 SKYLR-LRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVDLSRVEILVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI ++++ P RQ +LFSAT + N+A + DP+ ++V
Sbjct: 158 ADRMLDMGFIHDIRRVLNKLPPKRQNLLFSATFSDDIKNLANKLLHDPVSVEVARRNSAS 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q + FVD K LL +L+ + Q +VFT TK A+ +A++LN G AA +H
Sbjct: 218 EQIEQFVHFVDK-KRKGELLSFLIGSRNWQQVLVFTRTKHGANRLAEQLNKDGVTAAAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + GRI++LVATD+AARG+D+ + +V N++LP EDYVHRIGRT
Sbjct: 277 GNKSQGARTRALADFKAGRIRVLVATDIAARGLDIDQLPYVVNFELPNVAEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
GRA G A+SLV E +K IER K++IP I G+EP I+
Sbjct: 337 GRADATGQALSLVCVDEHKLLKDIERLLKREIPRMAIPGYEPDPTIKA 384
>gi|258541735|ref|YP_003187168.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01]
gi|384041656|ref|YP_005480400.1| RNA helicase [Acetobacter pasteurianus IFO 3283-12]
gi|384050171|ref|YP_005477234.1| RNA helicase [Acetobacter pasteurianus IFO 3283-03]
gi|384053281|ref|YP_005486375.1| RNA helicase [Acetobacter pasteurianus IFO 3283-07]
gi|384056513|ref|YP_005489180.1| RNA helicase [Acetobacter pasteurianus IFO 3283-22]
gi|384059154|ref|YP_005498282.1| RNA helicase [Acetobacter pasteurianus IFO 3283-26]
gi|384062448|ref|YP_005483090.1| RNA helicase [Acetobacter pasteurianus IFO 3283-32]
gi|384118524|ref|YP_005501148.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
gi|421848381|ref|ZP_16281369.1| RNA helicase [Acetobacter pasteurianus NBRC 101655]
gi|421852361|ref|ZP_16285050.1| RNA helicase [Acetobacter pasteurianus subsp. pasteurianus LMG 1262
= NBRC 106471]
gi|256632813|dbj|BAH98788.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01]
gi|256635870|dbj|BAI01839.1| RNA helicase [Acetobacter pasteurianus IFO 3283-03]
gi|256638925|dbj|BAI04887.1| RNA helicase [Acetobacter pasteurianus IFO 3283-07]
gi|256641979|dbj|BAI07934.1| RNA helicase [Acetobacter pasteurianus IFO 3283-22]
gi|256645034|dbj|BAI10982.1| RNA helicase [Acetobacter pasteurianus IFO 3283-26]
gi|256648089|dbj|BAI14030.1| RNA helicase [Acetobacter pasteurianus IFO 3283-32]
gi|256651142|dbj|BAI17076.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256654133|dbj|BAI20060.1| RNA helicase [Acetobacter pasteurianus IFO 3283-12]
gi|371460742|dbj|GAB26572.1| RNA helicase [Acetobacter pasteurianus NBRC 101655]
gi|371479441|dbj|GAB30253.1| RNA helicase [Acetobacter pasteurianus subsp. pasteurianus LMG 1262
= NBRC 106471]
Length = 445
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 167/392 (42%), Positives = 242/392 (61%), Gaps = 24/392 (6%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F + L +LKAL + GY PT +QE++IP + GRDL+ +QTG+GKTA+F LP L
Sbjct: 4 FSDLALAPPLLKALAEQGYDTPTPIQERSIPYLLQGRDLLGLAQTGTGKTASFALPILEH 63
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
+ KN N P QPR+LVL PTREL Q++ + + Y
Sbjct: 64 ----------LIKNPRANT-------------PKQPRVLVLAPTRELVAQISDSFKAYAR 100
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+MK +A+ + GG+ RQ++ + R ++L+A PGRL+D M G I+ S L+ILVLDEAD
Sbjct: 101 HMKFTQAV-VFGGVGQGRQVEAMRRGVDVLVAAPGRLLDLMGQGFIDLSGLEILVLDEAD 159
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLDMGF+ DI +I+ P RQT+LFSAT+ + ++A ++ DP ++V
Sbjct: 160 RMLDMGFVRDIRRIMTFVPEQRQTLLFSATMPRSIEDLAASLLNDPARVEVAPPSSTVDR 219
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
I Q+++FV+ K L ++ +V +AVVFT K +A+ +A+ LN + +A +HG+
Sbjct: 220 IQQAVMFVNGAGDKRDALLNMVESPKVSRAVVFTLMKHEANKVAEFLNKNNVVAEAIHGN 279
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
Q AR R ++ R G +K+LVATD+AARGIDV ++HVFNYDLP PE YVHRIGRT R
Sbjct: 280 KSQGARERAMKGFRSGSVKVLVATDIAARGIDVDDVSHVFNYDLPNVPESYVHRIGRTAR 339
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
AGR+G+AVS + +R ++ IER + +P+
Sbjct: 340 AGRDGWAVSFCDAEQRAWLRDIERTIGKTVPV 371
>gi|395007602|ref|ZP_10391321.1| DNA/RNA helicase, superfamily II, partial [Acidovorax sp. CF316]
gi|394314410|gb|EJE51333.1| DNA/RNA helicase, superfamily II, partial [Acidovorax sp. CF316]
Length = 575
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 177/403 (43%), Positives = 246/403 (61%), Gaps = 22/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F + L +LKA+ + GY PT +Q QAIPA ++G DL+ +QTG+GKTAAF LP L
Sbjct: 1 MTFDELNLAPAILKAVHETGYETPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ + S KN +F R LVLTPTRELA QV + Y
Sbjct: 61 HRLSQS-----AAPKN---------------KFGGKGIRALVLTPTRELAAQVEESVREY 100
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ I + + GG+ Q+ + R +IL+ATPGRL+D G ++ S +Q+LVLDE
Sbjct: 101 GKYLD-INSTVVFGGVGMNPQIDRIKRGVDILVATPGRLLDLQQQGFLDLSTVQVLVLDE 159
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+D++K++ P +Q++LFSAT + ++A + K+P ++V
Sbjct: 160 ADRMLDMGFIHDVKKVLALVPREKQSLLFSATFSDEIRDLANTLLKNPQSIQVTPSNTTV 219
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ ITQ I V K LL ++++ Q +VFT TK A+ +A+ L +G A LH
Sbjct: 220 QRITQVIHPVGRGKKKQVLL-HIIQQHNWSQVLVFTRTKFGANNVAEFLTKNGVNAMALH 278
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR + L + G I+ LVATD+AARGID+ + HV NY++P EDYVHRIGRT
Sbjct: 279 GNKSQSARTQALAGFKSGDIRALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRT 338
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPK 403
GRAG +G AVSLV E + +IERFTKQQIP++VI+GF P+
Sbjct: 339 GRAGNSGEAVSLVCMDEEGFMMEIERFTKQQIPVQVIDGFGPE 381
>gi|301344661|ref|ZP_07225402.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii AB056]
gi|301512465|ref|ZP_07237702.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii AB058]
gi|301595454|ref|ZP_07240462.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii AB059]
Length = 347
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 163/361 (45%), Positives = 229/361 (63%), Gaps = 17/361 (4%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F LHE + +AL +G+T PT VQEQ+IPAA+ G+DL+VSSQTGSGKTAAF+LP LH
Sbjct: 4 TFAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLH 63
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
A +P KER++ QP +LVL PTRELA QV+ +
Sbjct: 64 NLAGQDTFVPF---------------KERMK-AVTQPSILVLCPTRELAQQVSQDAIAFV 107
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+MK ++ +I+GGMP+ +Q+Q L + ++++ATPGRL+D +N ++ + L++DEA
Sbjct: 108 RHMKGVRIAAIMGGMPFGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEA 166
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLD+GF D+E I D QT++FSAT + +AE + +P + + +
Sbjct: 167 DRMLDLGFSEDLEAISDLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNT 226
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
+ITQ++ + D HK +LL + L D+ + QAVVF +T+ D D++A+ L +G LHG
Sbjct: 227 DITQTLHWTDGFEHKKKLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHG 286
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ Q RNR L ++R GR KILVATDVAARG+DVP I+HV N+ LP EDYVHRIGRTG
Sbjct: 287 AMPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTG 346
Query: 362 R 362
R
Sbjct: 347 R 347
>gi|431925519|ref|YP_007238553.1| DNA/RNA helicase [Pseudomonas stutzeri RCH2]
gi|431823806|gb|AGA84923.1| DNA/RNA helicase, superfamily II [Pseudomonas stutzeri RCH2]
Length = 605
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 175/404 (43%), Positives = 248/404 (61%), Gaps = 26/404 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E + A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERL-RFKPAQPRMLVLTPTRELALQVTAATER 119
H +R R+ P QPR+LVLTPTRELA QV E
Sbjct: 61 ELLFPG-------------------GHPDREHRYGPKQPRVLVLTPTRELAAQVH---ES 98
Query: 120 YGLYMK--KIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
+ +Y + +K+ I GG+ Q+Q +++ ++L+A PGRL+D N I+ SH++ILV
Sbjct: 99 FKVYARDLPLKSTCIFGGVGMNPQIQAVAKGLDVLVACPGRLLDLANQKAIDLSHVEILV 158
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
LDEADRMLDMGFI+D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 159 LDEADRMLDMGFIHDVKKVLAKLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPN 218
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+ I Q + V HK LL +L+ Q +VFT TK A+ +A+ L G AA
Sbjct: 219 TTVERIEQRMFRVA-ASHKRALLAHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAA 277
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
+HG+ QNAR + L + + +++ILVATD+AARG+D+ + HV N++LP EDYVHRI
Sbjct: 278 AIHGNKSQNARTKALADFKANQVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRI 337
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
GRTGRAGR+G A+SLV E +K IER TKQ+IP + GF+
Sbjct: 338 GRTGRAGRSGEAISLVAPDEEKLLKGIERMTKQRIPEGDLMGFD 381
>gi|392419400|ref|YP_006456004.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri CCUG
29243]
gi|390981588|gb|AFM31581.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri CCUG
29243]
Length = 607
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 174/402 (43%), Positives = 248/402 (61%), Gaps = 22/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E + A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERL-RFKPAQPRMLVLTPTRELALQVTAATER 119
H +R R+ P QPR+LVLTPTRELA QV + +
Sbjct: 61 ELLFPG-------------------GHPDREHRYGPKQPRVLVLTPTRELAAQVHDSFKI 101
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y + +K+ I GG+ Q+Q +++ ++L+A PGRL+D N I+ SH++ILVLD
Sbjct: 102 YARDLP-LKSTCIFGGVGMNPQIQAVAKGLDVLVACPGRLLDLANQKAIDLSHVEILVLD 160
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 161 EADRMLDMGFIHDVKKVLAKLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTT 220
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+ I Q + V HK LL +L+ Q +VFT TK A+ +A+ L G AA +
Sbjct: 221 VERIEQRMFRVA-ASHKRALLAHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAI 279
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HG+ QNAR + L + + +++ILVATD+AARG+D+ + HV N++LP EDYVHRIGR
Sbjct: 280 HGNKSQNARTKALADFKANQVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGR 339
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
TGRAGR+G A+SLV+ E +K IER TKQ+IP + GF+
Sbjct: 340 TGRAGRSGEAISLVSPDEEKLLKGIERMTKQRIPEGDLMGFD 381
>gi|398989804|ref|ZP_10693032.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM24]
gi|399013724|ref|ZP_10716027.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM16]
gi|398112966|gb|EJM02818.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM16]
gi|398146531|gb|EJM35271.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM24]
Length = 627
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 174/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEDAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ P + +Q R P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERL------FPNGHPDKSQ------------RHGPRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+Y + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KIYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPSKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLPASHKRALLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + +++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKANQVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|398849062|ref|ZP_10605837.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM84]
gi|398245455|gb|EJN30975.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM84]
Length = 631
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 170/406 (41%), Positives = 253/406 (62%), Gaps = 24/406 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ P + +Q R P QPR+LVLTPTRELA QV + +
Sbjct: 61 ERL------FPAGHPDKSQ------------RHGPRQPRVLVLTPTRELAAQVH---DSF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+Y + + +S + GG+ Q+Q +++ ++L+A PGRL+D GK++ +H++ILVL
Sbjct: 100 KVYARDLPLVSACVFGGVGMNPQVQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI+D++K++ P RQ +LFSAT + ++A+ + +P ++V
Sbjct: 160 DEADRMLDMGFIHDVKKVLARLPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + + HK LL +L+ Q +VFT TK A+ +A+ L G AA
Sbjct: 220 TVERIEQRVYRLP-ASHKRALLAHLITLGAWEQVLVFTRTKHGANRLAEYLEKHGLSAAA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + +++LVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKANAVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+P +
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERVTKQKIADGDLMGFDPSQ 384
>gi|70733086|ref|YP_262859.1| ATP-dependent RNA helicase [Pseudomonas protegens Pf-5]
gi|68347385|gb|AAY94991.1| putative ATP-dependent RNA helicase [Pseudomonas protegens Pf-5]
Length = 622
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 174/403 (43%), Positives = 250/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E ++ A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ P + +Q R P QPR+LVLTPTRELA QV + +
Sbjct: 61 ERL------FPNGHPDKSQ------------RHGPRQPRVLVLTPTRELAAQVH---DSF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + +K +S I GG+ Q+Q ++R ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KLYARDLKFVSACIFGGVGMNPQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLPASHKRALLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + G ++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKAGEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|398852761|ref|ZP_10609405.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM80]
gi|398242949|gb|EJN28549.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM80]
Length = 626
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 174/403 (43%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEDAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N + +K H P QPR+LVLTPTRELA QV E +
Sbjct: 61 ERLFP------------NGHPDKSQRHG------PRQPRVLVLTPTRELAAQVH---ESF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+Y + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KIYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPSKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLPASHKRALLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + +++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKANQVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|187777742|ref|ZP_02994215.1| hypothetical protein CLOSPO_01334 [Clostridium sporogenes ATCC
15579]
gi|187774670|gb|EDU38472.1| DEAD/DEAH box helicase [Clostridium sporogenes ATCC 15579]
Length = 425
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 184/453 (40%), Positives = 268/453 (59%), Gaps = 41/453 (9%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+++ + + + KAL + GY K T +QE++IP + G+DL+ +QTG+GKTAAF +P L
Sbjct: 1 MLFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ K +N+N P R LVL PTRELA+Q+ + E Y
Sbjct: 61 QNLSKDKK--------VNKN--------------PRTIRALVLAPTRELAIQIGESFECY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ +K+ I GG+ Q + L +IL+ATPGR++D N I+ +++ VLDE
Sbjct: 99 GKYIN-LKSAVIFGGVSQNPQTKALREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMG I+D++KI+ P RQ +LFSAT+ + + ++I KDP+ ++V +
Sbjct: 158 ADRMLDMGMIHDVKKIISKLPKVRQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTV 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
ITQ + V K LL +LL+D+ + A+VF+ TKR A++IA L +G A +H
Sbjct: 218 DTITQEVYHVRK-KQKRSLLKHLLKDESIESALVFSTTKRGANMIAKDLVEAGIEAEAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ QNAR R L N + G+I++LVATD+AARGIDV ++HVFNY+LP PE YVHRIGRT
Sbjct: 277 GNKSQNARQRALNNFKEGKIRVLVATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIP--------IEVINGFEPKKR-IRTYYS 411
GRAG G A+S + E ++K IE+ ++IP I IN E KK + Y+
Sbjct: 337 GRAGAKGVAISFCDIEEIKSLKAIEKLIHKEIPVVEDHPYKIRHINEDEVKKENTKNNYN 396
Query: 412 R---YRFNNNNWK-THNINKSNITKRFYRQIKK 440
+ + NW+ ++N K+N TK QIKK
Sbjct: 397 KRPSSKRQGGNWRYSNNRRKNNSTK----QIKK 425
>gi|37525462|ref|NP_928806.1| ATP-dependent RNA helicase RhlE [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36784890|emb|CAE13804.1| ATP-dependent RNA helicase RhlE [Photorhabdus luminescens subsp.
laumondii TTO1]
Length = 434
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 172/408 (42%), Positives = 250/408 (61%), Gaps = 24/408 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
MNFKS+GL +L+A+ + GY+ PT +Q+QAIP ++G+DL+ S+QTG+GKTA F LP L
Sbjct: 7 MNFKSLGLSADILRAVEEQGYSAPTPIQQQAIPVVLAGKDLLASAQTGTGKTAGFTLPML 66
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ N P+ K +P R L+LTPTRELA QV Y
Sbjct: 67 QRL----NDSPIQMKGR----------------RPV--RALILTPTRELAAQVGENVRDY 104
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y++ ++++ + GG+ QM L +IL+ATPGRL+D + ++ S ++ILVLDE
Sbjct: 105 SKYLR-LRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVDLSRVEILVLDE 163
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI ++++ P RQ +LFSAT + ++A + +DP+ ++V
Sbjct: 164 ADRMLDMGFIHDIRRVLNKLPPKRQNLLFSATFSDDIKSLASKLLRDPVSVEVARRNSAS 223
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q + FVD K LL +L+ + Q +VFT TK A+ +A++LN G A+ +H
Sbjct: 224 EQIEQLVHFVDK-KRKGELLSFLIGSRNWQQVLVFTRTKHGANRLAEQLNKDGVTASAIH 282
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + GRI++LVATD+AARG+D+ + +V N++LP EDYVHRIGRT
Sbjct: 283 GNKSQGARTRALADFKDGRIRVLVATDIAARGLDIDQLPYVVNFELPNVAEDYVHRIGRT 342
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
GRA G A+SLV E +K IER K++IP I G+EP I+
Sbjct: 343 GRADATGQALSLVCVDEHKLLKDIERLLKREIPRMAIPGYEPDPTIKA 390
>gi|89074254|ref|ZP_01160744.1| putative ATP-dependent RNA helicase, DEAD box family protein
[Photobacterium sp. SKA34]
gi|89049958|gb|EAR55492.1| putative ATP-dependent RNA helicase, DEAD box family protein
[Photobacterium sp. SKA34]
Length = 427
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 169/405 (41%), Positives = 247/405 (60%), Gaps = 19/405 (4%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+S+ LH +LKAL +GY+ PT VQ+QAIP A+ G D++ +QTG+GKTAAF LP L
Sbjct: 1 MSFQSLNLHPNLLKALTDLGYSTPTDVQQQAIPLALKGDDVMAGAQTGTGKTAAFTLPLL 60
Query: 61 HKF---ASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAAT 117
+ S ++ +N ++ NKI R L+LTPTRELA QV +
Sbjct: 61 QRLMTLPSQAEQVSTAVENNQKSRNKI--------------RALILTPTRELAQQVFDSI 106
Query: 118 ERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
Y Y + IK GG Q++ L+ EIL+ATPGRL+DH+ +G ++ S ++ V
Sbjct: 107 TTYAKYTE-IKVAVAYGGTSMNVQVKALNAGAEILVATPGRLLDHVFNGSVSLSEVETFV 165
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
LDEADRMLDMGFI DI++I+ P RQT+ FSAT V +A +I +P +++V
Sbjct: 166 LDEADRMLDMGFIVDIQRIMKRMPAERQTLFFSATFSKQVKKLAFDILTNPKMVEVTPAN 225
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+ + Q I++ D K LL YL+ + Q +VFT TK+ +D +A L + G A+
Sbjct: 226 TAAETVEQ-IVYPVDKHRKAELLAYLIGSRNWRQVLVFTKTKQGSDQLAKDLGLDGIKAS 284
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
++GD Q AR R L++ + G+ ++LVATDVAARG+D+ + +V N+D+P EDYVHRI
Sbjct: 285 SINGDKSQGARQRALDDFKSGKTRVLVATDVAARGLDIEQLEYVVNFDMPFKAEDYVHRI 344
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRTGRAG G A++L++ E +K IE ++P + + G+EP
Sbjct: 345 GRTGRAGMTGHAITLMSLDEEWALKAIEELLDSRLPQQWLEGYEP 389
>gi|284007123|emb|CBA72399.1| ATP-dependent RNA helicase [Arsenophonus nasoniae]
Length = 438
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 175/407 (42%), Positives = 242/407 (59%), Gaps = 24/407 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S+GL +L A+ + GY KPT +Q+QAIPA ++G+DL+ S+QTG+GKTA F+LP L
Sbjct: 7 MCFNSLGLSAEILSAIKEAGYEKPTSIQQQAIPAILAGKDLLASAQTGTGKTAGFVLPIL 66
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + PV+ K KP R L+L PTRELA QV Y
Sbjct: 67 QHLSQT----PVVVKG----------------KKPV--RALILAPTRELAAQVGQNVRNY 104
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
+++ +K++ + GG+ QM L +IL+ATPGRL+D + ++ S ++ILVLDE
Sbjct: 105 SQFLR-LKSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLVQQNAVSLSQVEILVLDE 163
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI +I+D P RQ +LFSAT + +A ++ +P IL+V
Sbjct: 164 ADRMLDMGFIHDIRRILDKLPTKRQNLLFSATFSNQIKQLANSLLHNPTILEVAPRNSAS 223
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I FVD K LL YL+ + Q +VFT TK A+ + + L G A +H
Sbjct: 224 QQVKQLIHFVDK-RRKAELLSYLIGSENWQQVLVFTRTKYGANRLTEHLIKDGIKAMAIH 282
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G I++LVATD+AARG+D+ + +V NY+LP EDYVHRIGRT
Sbjct: 283 GNKSQGARTRALADFKSGAIRVLVATDIAARGLDIEQLPYVVNYELPNVAEDYVHRIGRT 342
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIR 407
GRA G AVSLV E+ + IER KQ IP + G+EP IR
Sbjct: 343 GRAAATGLAVSLVAIDEQSLLTAIERLLKQSIPRMALAGYEPDPTIR 389
>gi|88812119|ref|ZP_01127371.1| probable atp-dependent rna helicase protein [Nitrococcus mobilis
Nb-231]
gi|88790623|gb|EAR21738.1| probable atp-dependent rna helicase protein [Nitrococcus mobilis
Nb-231]
Length = 429
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 168/402 (41%), Positives = 240/402 (59%), Gaps = 27/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F GL +L+A+ GYT PT +Q QAIP ++GRDL+ ++QTG+GKTAAF LP L
Sbjct: 1 MTFDCFGLSADILRAVRTEGYTTPTPIQAQAIPLVVAGRDLLAAAQTGTGKTAAFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ ++ +P + PR LVLTPTRELA QV + Y
Sbjct: 61 QRLSA----VPTRHR---------------------APRALVLTPTRELAAQVRESVRSY 95
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +++ ++ GG+ Q+ L ++++ATPGRL+DH+ + S ++I VLDE
Sbjct: 96 GRHLP-LRSTAVFGGVGINPQISALRSGVDVVVATPGRLLDHLQQRTVELSRVEIFVLDE 154
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI K++ A P RQ +LFSAT G + +A+ I DP +
Sbjct: 155 ADRMLDMGFIRDIRKVMAALPQKRQNLLFSATFSGEIRKLADQILHDPASVDTAPRNSVA 214
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ IT + V K LL +L+ + + Q +VFT TK A+ +A +L+ G A +H
Sbjct: 215 ELITHKVHPVAQS-RKRALLAHLIGNGKWSQVLVFTRTKHGANRLATQLDRDGLNATAIH 273
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
Q+AR + L++ +RGR+++LVATD+AARG+D+ A+ HV NY+L EDYVHRIGRT
Sbjct: 274 SSKSQSARTKALQDFKRGRVRVLVATDIAARGLDIEALPHVVNYELSNIAEDYVHRIGRT 333
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G AVSLV+ ER ++ IER +++P VI GFEP
Sbjct: 334 GRAGSQGQAVSLVSADERKHLANIERLLGRRLPCTVIEGFEP 375
>gi|156934713|ref|YP_001438629.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii ATCC
BAA-894]
gi|156532967|gb|ABU77793.1| hypothetical protein ESA_02548 [Cronobacter sakazakii ATCC BAA-894]
Length = 474
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 172/410 (41%), Positives = 243/410 (59%), Gaps = 32/410 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q QAIP +SG+DL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFASS----KNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ ++ K + PV R L+LTPTRELA QV
Sbjct: 61 QRLTANQPHPKGRRPV--------------------------RALILTPTRELAAQVGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + +++L
Sbjct: 95 VREYSKYLD-IRSLVVFGGVSINPQMMKLRGGVDVLIATPGRLLDLEHQNAVKLDQVEVL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + ++AE + +P ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPPKRQNLLFSATFSDDIKSLAEKLLHNPEEVEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL YL+ D Q +VFT TK A+ +A++LN G A
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSYLIGDGNWQQVLVFTRTKHGANHLAEQLNKDGITA 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKTGGIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
IGRTGRA G A+SLV E ++ IER K++IP I G+EP I
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIERLLKREIPRMAIPGYEPDPSI 382
>gi|429122441|ref|ZP_19183020.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii 680]
gi|426323043|emb|CCK13757.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii 680]
Length = 467
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 172/410 (41%), Positives = 243/410 (59%), Gaps = 32/410 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q QAIP +SG+DL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFASS----KNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ ++ K + PV R L+LTPTRELA QV
Sbjct: 61 QRLTANQPHPKGRRPV--------------------------RALILTPTRELAAQVGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + +++L
Sbjct: 95 VREYSKYLD-IRSLVVFGGVSINPQMMKLRGGVDVLIATPGRLLDLEHQNAVKLDQVEVL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + ++AE + +P ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPPKRQNLLFSATFSDDIKSLAEKLLHNPEEVEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL YL+ D Q +VFT TK A+ +A++LN G A
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSYLIGDGNWQQVLVFTRTKHGANHLAEQLNKDGITA 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKTGGIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
IGRTGRA G A+SLV E ++ IER K++IP I G+EP I
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIERLLKREIPRMAIPGYEPDPSI 382
>gi|449308931|ref|YP_007441287.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii SP291]
gi|449098964|gb|AGE86998.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii SP291]
Length = 444
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 172/410 (41%), Positives = 243/410 (59%), Gaps = 32/410 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q QAIP +SG+DL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFASS----KNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ ++ K + PV R L+LTPTRELA QV
Sbjct: 61 QRLTANQPHPKGRRPV--------------------------RALILTPTRELAAQVGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + +++L
Sbjct: 95 VREYSKYLD-IRSLVVFGGVSINPQMMKLRGGVDVLIATPGRLLDLEHQNAVKLDQVEVL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + ++AE + +P ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPPKRQNLLFSATFSDDIKSLAEKLLHNPEEVEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL YL+ D Q +VFT TK A+ +A++LN G A
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSYLIGDGNWQQVLVFTRTKHGANHLAEQLNKDGITA 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKTGGIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
IGRTGRA G A+SLV E ++ IER K++IP I G+EP I
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIERLLKREIPRMAIPGYEPDPSI 382
>gi|429085612|ref|ZP_19148582.1| ATP-dependent RNA helicase RhlE [Cronobacter condimenti 1330]
gi|426545220|emb|CCJ74623.1| ATP-dependent RNA helicase RhlE [Cronobacter condimenti 1330]
Length = 474
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 173/409 (42%), Positives = 241/409 (58%), Gaps = 31/409 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q QAIP +SG+DL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFASS---KNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAAT 117
+ ++ K + PV R L+LTPTRELA QV
Sbjct: 61 QRLTANEPQKGRRPV--------------------------RALILTPTRELAAQVGENV 94
Query: 118 ERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + +++LV
Sbjct: 95 REYSKYLD-IRSLVVFGGVSINPQMMKLRGGVDVLIATPGRLLDLEHQNAVKLDQVEVLV 153
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
LDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + ++P + V
Sbjct: 154 LDEADRMLDMGFIHDIRRVLAKLPPKRQNLLFSATFSDDIKGLAEKLLRNPEEVAVARRN 213
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+TQ + FVD K LL YL+ D Q +VFT TK A+ +A++LN G AA
Sbjct: 214 TASGQVTQHVHFVDK-KRKRELLSYLIGDGNWQQVLVFTRTKHGANHLAEQLNKDGITAA 272
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
+HG+ Q AR R L + + G I++LVATD+AARGID+ + HV NY+LP PEDYVHRI
Sbjct: 273 AIHGNKSQGARTRALADFKTGGIRVLVATDIAARGIDIEELPHVVNYELPNVPEDYVHRI 332
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
GRTGRA G A+SLV E ++ IER K++IP I G+EP I
Sbjct: 333 GRTGRAAATGEALSLVCVDEHKLLRDIERVLKREIPRMAIPGYEPDPSI 381
>gi|288942468|ref|YP_003444708.1| DEAD/DEAH box helicase domain-containing protein [Allochromatium
vinosum DSM 180]
gi|288897840|gb|ADC63676.1| DEAD/DEAH box helicase domain protein [Allochromatium vinosum DSM
180]
Length = 438
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 169/403 (41%), Positives = 247/403 (61%), Gaps = 27/403 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F ++GL +L+A+ GYT+PT +Q +AIPA ++ RD++ ++QTG+GKTAAF LP L
Sbjct: 1 MSFSALGLSAELLRAIAAQGYTQPTPIQSKAIPAVLARRDVLAAAQTGTGKTAAFTLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H + S T ++R PR LVLTPTRELA QV + Y
Sbjct: 61 HLLSQS-------------------TQRQR------APRALVLTPTRELAAQVGESVSTY 95
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ ++A+ I GG+ + Q L R +IL+ATPGRL+DH+ G ++ S ++ VLDE
Sbjct: 96 GQHLP-LRALQIFGGVGMVPQTTALRRGVDILVATPGRLLDHVGQGHVDLSKIEFFVLDE 154
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI +++ P RQ +LFSAT + +A + DPL ++V
Sbjct: 155 ADRMLDMGFIHDIRRVLKLLPSKRQNLLFSATYSREIEQLAIGLLHDPLRIEVAPRNTAA 214
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ +TQ + V K LL +L+ Q ++FT TK A+ +A++L G AA +H
Sbjct: 215 ETVTQVVHPVAREA-KRSLLSHLILQGDWQQVLIFTRTKHGANRLAEQLGRDGITAAAIH 273
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G ++ LVATD+AARG+D+ + HV N++LP PEDYVHRIGRT
Sbjct: 274 GNKSQGARTRALADFKSGALRALVATDIAARGLDIDRLPHVVNFELPNVPEDYVHRIGRT 333
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPK 403
GRAG +G AVSL++ ER + IER ++I ++ I+GFE +
Sbjct: 334 GRAGSDGTAVSLISPDERGLLAGIERLLGRRIDVQRIDGFEER 376
>gi|444379626|ref|ZP_21178803.1| ATP-dependent RNA helicase [Enterovibrio sp. AK16]
gi|443676355|gb|ELT83059.1| ATP-dependent RNA helicase [Enterovibrio sp. AK16]
Length = 410
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 160/395 (40%), Positives = 241/395 (61%), Gaps = 28/395 (7%)
Query: 8 LHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSK 67
LH + + L ++GY++PT +Q+QAIP + G+D++ ++QTG+GKTAAF LP +H+
Sbjct: 9 LHPTLQQTLSELGYSEPTDIQQQAIPKVLEGKDVMGAAQTGTGKTAAFTLPLIHQLLE-- 66
Query: 68 NKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKI 127
R R+L++TPTRELA QV YG + +
Sbjct: 67 ------------------------RGVKGSARVLIVTPTRELAQQVYDKVAEYGQHTS-L 101
Query: 128 KAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDM 187
K +++ GG Q L++ PEI++ TPGRL+DH++ G + + L LVLDEADRMLDM
Sbjct: 102 KCVALYGGANINPQKNQLAKKPEIIVGTPGRLLDHLHIGTLQLNSLDTLVLDEADRMLDM 161
Query: 188 GFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSI 247
GFI+DI++++ P RQT+ FSAT V ++A + DP+ ++V++ + + Q +
Sbjct: 162 GFISDIKRLMKKMPKERQTLFFSATYPKQVMDLAYRLLNDPVRVEVSTANSTAETVNQLV 221
Query: 248 LFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNA 307
VD K LL YL+ + + Q +VF T++ + +A+ L + G A +HG+ Q A
Sbjct: 222 HPVDRK-RKRELLSYLIGSRNLQQVLVFAKTRQSTEALANELKLDGLAAEAIHGEKTQGA 280
Query: 308 RNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNG 367
RNR LE + G +++LVATDVAARG+D+P++ VFNY+LP PEDY+HRIGRTGRAG++G
Sbjct: 281 RNRALEGFKNGTVRVLVATDVAARGLDIPSLDTVFNYELPHQPEDYIHRIGRTGRAGKSG 340
Query: 368 FAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
A+SLV+ E + IE Q++P E + GFEP
Sbjct: 341 MAISLVSREEEGMLNAIETLIDQRLPQEWLAGFEP 375
>gi|260597188|ref|YP_003209759.1| ATP-dependent RNA helicase RhlE [Cronobacter turicensis z3032]
gi|260216365|emb|CBA29399.1| Putative ATP-dependent RNA helicase rhlE [Cronobacter turicensis
z3032]
Length = 500
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 171/410 (41%), Positives = 243/410 (59%), Gaps = 32/410 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q QAIP +SG+DL+ S+QTG+GKTA F LP L
Sbjct: 3 MSFDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLL 62
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ + ++ + PV R L+LTPTRELA QV
Sbjct: 63 QRLTAKAPHAQGRRPV--------------------------RALILTPTRELAAQVGEN 96
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + +++L
Sbjct: 97 VREYSKYLD-IRSLVVFGGVSINPQMMKLRSGVDVLIATPGRLLDLEHQNAVKLDQVEVL 155
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + ++P ++V
Sbjct: 156 VLDEADRMLDMGFIHDIRRVLAKLPPKRQNLLFSATFSDDIKTLAEKLLRNPEEVEVARR 215
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ ITQ + FVD K LL YL+ D Q +VFT TK A+ +A++LN G A
Sbjct: 216 NTASEQITQHVHFVDK-KRKRELLSYLIGDGNWQQVLVFTRTKHGANHLAEQLNKDGITA 274
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 275 AAIHGNKSQGARTRALADFKTGGIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 334
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
IGRTGRA G A+SLV E ++ IER +++IP I G+EP I
Sbjct: 335 IGRTGRAAATGEALSLVCVDEHKLLRDIERVLQREIPRMAIAGYEPDPSI 384
>gi|386818532|ref|ZP_10105750.1| DEAD/DEAH box helicase domain protein [Thiothrix nivea DSM 5205]
gi|386423108|gb|EIJ36943.1| DEAD/DEAH box helicase domain protein [Thiothrix nivea DSM 5205]
Length = 446
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 170/395 (43%), Positives = 236/395 (59%), Gaps = 26/395 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL E +L+A+ + GY PT +Q+Q IPA +SGRDL+ ++QTG+GKTA F LP L
Sbjct: 1 MSFSELGLAEPLLRAIAEQGYATPTPIQQQGIPAVLSGRDLMAAAQTGTGKTAGFTLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ K +N I R LVLTPTRELA QV + Y
Sbjct: 61 HRLMEGKRPA----------SNHI--------------RALVLTPTRELAAQVGESVRDY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ I + GG+ QM L + ++L+ATPGRL+D + FS +++LVLDE
Sbjct: 97 GAHLPLASTI-VFGGVSINPQMMALRKGVDVLVATPGRLLDLYEQNAVKFSQVEMLVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ +LFSAT + +A+ + DPL + V+
Sbjct: 156 ADRMLDMGFIRDIRKILALLPKRRQNLLFSATFSDDITALAKGLLHDPLQVSVSPRNAAA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ QS+ +D K LL +L+RD + Q +VFT TK A+ +A++L G AA +H
Sbjct: 216 NTVKQSVYLIDKA-RKTALLSHLVRDNQWEQVLVFTRTKHGANRLAEKLARDGVTAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + L + ++ I++LVATD+AARGID+ + HV N++LP EDYVHRIGRT
Sbjct: 275 GNKSQGARTKALADFKQNNIRVLVATDIAARGIDIDQLPHVVNFELPNVSEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIE 395
GRAG +G A+SLV E +K IE+ KQ +P E
Sbjct: 335 GRAGASGEAISLVEPEEHKYLKGIEKLIKQTLPRE 369
>gi|339495975|ref|YP_004716268.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri ATCC
17588 = LMG 11199]
gi|338803347|gb|AEJ07179.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri ATCC
17588 = LMG 11199]
Length = 605
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 174/402 (43%), Positives = 247/402 (61%), Gaps = 22/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E + A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERL-RFKPAQPRMLVLTPTRELALQVTAATER 119
H +R R+ P QPR+LVLTPTRELA QV + +
Sbjct: 61 ELLFPG-------------------GHPDREHRYGPKQPRVLVLTPTRELAAQVHDSFKV 101
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y + +K+ I GG+ Q+Q +++ ++L+A PGRL+D N I+ SH++ILVLD
Sbjct: 102 YARDLP-LKSTCIFGGVGMNPQIQAVAKGLDVLVACPGRLLDLANQKAIDLSHVEILVLD 160
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 161 EADRMLDMGFIHDVKKVLAKLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTT 220
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+ I Q +F HK LL +L+ Q +VFT TK A+ +A+ L G AA +
Sbjct: 221 VERIEQR-MFRIAASHKRALLAHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAI 279
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HG+ QNAR + L + + +++ILVATD+AARG+D+ + HV N++LP EDYVHRIGR
Sbjct: 280 HGNKSQNARTKALADFKANQVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGR 339
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
TGRAGR+G A+SLV E +K IER TKQ+IP + GF+
Sbjct: 340 TGRAGRSGEAISLVAPDEEKLLKGIERMTKQRIPEGDLMGFD 381
>gi|226947893|ref|YP_002802984.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A2 str.
Kyoto]
gi|226840806|gb|ACO83472.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A2 str.
Kyoto]
Length = 425
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 184/453 (40%), Positives = 268/453 (59%), Gaps = 41/453 (9%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+++ + + + KAL + GY K T +QE++IP + G+DL+ +QTG+GKTAAF +P L
Sbjct: 1 MLFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ K +N+N P R LVL PTRELA+Q+ + E Y
Sbjct: 61 QNLSKDKK--------VNKN--------------PRTIRALVLAPTRELAIQIGESFECY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ +K+ I GG+ Q + L +IL+ATPGR++D N I+ +++ VLDE
Sbjct: 99 GKYIN-LKSAVIFGGVSQNPQTKALREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMG I+D++KI+ P RQ +LFSAT+ + + ++I KDP+ ++V +
Sbjct: 158 ADRMLDMGMIHDVKKIISKLPRGRQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTV 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
ITQ + V K LL +LL+D+ + A+VF+ TKR A++IA L +G A +H
Sbjct: 218 DTITQEVYHVRK-KQKRSLLKHLLKDESIESALVFSTTKRGANMIAKDLVEAGIEAEAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ QNAR R L N + G+I++LVATD+AARGIDV ++HVFNY+LP PE YVHRIGRT
Sbjct: 277 GNKSQNARQRALNNFKEGKIRVLVATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIP--------IEVINGFEPKKR-IRTYYS 411
GRAG G A+S + E ++K IE+ ++IP I IN E KK + Y+
Sbjct: 337 GRAGAKGVAISFCDIEETKSLKAIEKLIHKEIPVVEDHPYKIRHINEDEVKKENTKNNYN 396
Query: 412 R---YRFNNNNWK-THNINKSNITKRFYRQIKK 440
+ + NW+ ++N K+N TK QIKK
Sbjct: 397 KKPSSKRQGGNWRYSNNRRKNNSTK----QIKK 425
>gi|394988697|ref|ZP_10381532.1| DEAD/DEAH box helicase domain-containingprotein [Sulfuricella
denitrificans skB26]
gi|393792076|dbj|GAB71171.1| DEAD/DEAH box helicase domain-containingprotein [Sulfuricella
denitrificans skB26]
Length = 445
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 173/404 (42%), Positives = 248/404 (61%), Gaps = 22/404 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL + +++A+ + GYT PT +Q QAIPA +SG DL+ +QTG+GKTA F+LP L
Sbjct: 1 MSFASLGLSDEIVRAVTERGYTVPTPIQMQAIPAVMSGGDLLAGAQTGTGKTAGFVLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ + K P + I R L+L PTRELA QV + Y
Sbjct: 61 HRLSDPNVKGP------SSGRPPI--------------RALILIPTRELAAQVEESVRDY 100
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++K + +++++GG+ Q+ L +IL+ATPGRL+DH+ ++ SH++ILVLDE
Sbjct: 101 GKHLK-LNSMTMIGGVNINPQITKLRGRVDILVATPGRLLDHVQQKTVDLSHVEILVLDE 159
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI+KI+ P RQ +LFSAT + +A+ + P +++V
Sbjct: 160 ADRMLDMGFIRDIKKILALLPKHRQNLLFSATFSDEIKALADGLLNKPAMIEVARRNATA 219
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
N+ + VD K LL +L+++ Q +VFT TK A+ +A+ L G A +H
Sbjct: 220 DNVAHKVYPVDRD-KKRALLSHLIKEHNWSQVLVFTRTKHGANQLAEHLIKGGIPALAIH 278
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + G +++LVATD+AARGIDV + HV N++LP PEDYVHRIGRT
Sbjct: 279 GNKSQSARTRALSEFKDGSLRVLVATDIAARGIDVVDLPHVVNFELPNVPEDYVHRIGRT 338
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRAG +G AVSLV E + IER K+++P EV+ GFEP +
Sbjct: 339 GRAGASGEAVSLVCVDEYKLLADIERLLKRELPEEVVPGFEPDR 382
>gi|339481611|ref|YP_004693397.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
Is79A3]
gi|338803756|gb|AEI99997.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. Is79A3]
Length = 445
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 173/408 (42%), Positives = 248/408 (60%), Gaps = 22/408 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F + GL + +++A+ + GYT PT +Q QAIPA ++G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFSTFGLSDEIIRAVTERGYTVPTPIQTQAIPAVLAGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ + K P + I R L+L PTRELA QV + Y
Sbjct: 61 HRLSDKSIKGP------SSGRPPI--------------RALILVPTRELAAQVEESVRDY 100
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ K+ ++ ++GG+ Q+ L +IL+ATPGRL+DH+ ++ SH++ILVLDE
Sbjct: 101 GKYL-KLSSMIMIGGVNINPQITRLKSRVDILVATPGRLLDHVQQKTLSLSHIEILVLDE 159
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI+KI+ P RQ +LFSAT + +A+N+ P++++V
Sbjct: 160 ADRMLDMGFIRDIKKILALLPKQRQNLLFSATFSDEIQALADNLLNKPVMIEVARRNATA 219
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+T + VD K LL +L++ R Q +VFT TK A+ +A+ L +G A +H
Sbjct: 220 DKVTHVVHPVDRD-RKKELLAHLIKQHRWSQVLVFTRTKHGANKLAEFLLANGIPALAIH 278
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR + L + G +++LVATD+AARGID+ + HV N++LP EDYVHRIGRT
Sbjct: 279 GNKSQSARTQALAKFKAGDLQVLVATDIAARGIDISELPHVVNFELPNVAEDYVHRIGRT 338
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
GRAG G AVSLV E + IE+ K++IP +VI GFEP RI+
Sbjct: 339 GRAGSEGDAVSLVCVDETKLLTAIEKLIKREIPSQVIAGFEPDPRIKA 386
>gi|389841642|ref|YP_006343726.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii ES15]
gi|387852118|gb|AFK00216.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii ES15]
Length = 474
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 172/410 (41%), Positives = 243/410 (59%), Gaps = 32/410 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q QAIP +SG+DL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFASS----KNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ ++ K + PV R L+LTPTRELA QV
Sbjct: 61 QRLTANQPHPKGRRPV--------------------------RALILTPTRELAAQVGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + +++L
Sbjct: 95 VREYSKYLD-IRSLVVFGGVSINPQMMKLRGGVDVLIATPGRLLDLEHQNAVKLDQVEVL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + ++AE + +P ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPPKRQNLLFSATFSDDIKSLAEKLLHNPEEVEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL YL+ D Q +VFT TK A+ +A++LN G A
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSYLIGDGNWQQVLVFTRTKHGANHLAEQLNKDGITA 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKTGGIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
IGRTGRA G A+SLV E ++ IER K++IP I G+EP I
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIERLLKREIPRMAIPGYEPDPSI 382
>gi|251773001|gb|EES53557.1| putative ATP-dependent helicase [Leptospirillum ferrodiazotrophum]
Length = 472
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 167/389 (42%), Positives = 245/389 (62%), Gaps = 28/389 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+++GL+ +L+AL + + PT +Q+Q IP I GRD++ +QTGSGKT F+LP+L
Sbjct: 1 MSFETLGLNPDLLRALSDLKHESPTPIQKQTIPPIIEGRDVLGVAQTGSGKTGGFLLPSL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ NK + N+ ++I LVL+PTRELA Q+ + Y
Sbjct: 61 HR-----NK----RAQGNRTRHQI----------------LVLSPTRELAGQIERSAREY 95
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y++ + + ++GG RQ+ L R ++++ATPGRLIDHM G IN SH+ +VLDE
Sbjct: 96 GKYLRS-RTVLLVGGTDMRRQIDFLRRPWDLVIATPGRLIDHMQRGTINLSHVHTVVLDE 154
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF+ D+E I+ A RQT+LF+ATL + + + KDP+++++ +
Sbjct: 155 ADRMLDMGFLPDVETILKALHPERQTLLFTATLPARIQMLTKTYQKDPVLIRLETASAPP 214
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRV--GQAVVFTATKRDADIIADRLNISGFLAAP 298
+I Q ++ + K LL +L + + GQ ++FT TKR A+ +A++L GF +
Sbjct: 215 VSIDQEVVAISHGAQKWGLLKTILTEPQTTEGQTLIFTRTKRGAEDLANQLLAEGFPSDA 274
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
LHGD Q+ RNR L R G+ +ILVATDVAARG+D+ +T V NYDLP+ PEDYVHRIG
Sbjct: 275 LHGDKSQSQRNRVLSKFRAGQTRILVATDVAARGLDIDTVTCVINYDLPQSPEDYVHRIG 334
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERF 387
RTGRAGR+G A+S + A+R ++ IER
Sbjct: 335 RTGRAGRSGRAISFCHPADRNLLRDIERL 363
>gi|389774439|ref|ZP_10192558.1| DNA/RNA helicase [Rhodanobacter spathiphylli B39]
gi|388438038|gb|EIL94793.1| DNA/RNA helicase [Rhodanobacter spathiphylli B39]
Length = 638
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 169/403 (41%), Positives = 240/403 (59%), Gaps = 35/403 (8%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F ++ LH VL+AL VGY P+ +Q IP + GRD++ +QTG+GKTAAF LP L
Sbjct: 14 GFGALELHPDVLRALADVGYESPSPIQAATIPPLMEGRDVLGQAQTGTGKTAAFALPIL- 72
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
R+ KP +P+ LVL PTRELA+QV A ++Y
Sbjct: 73 ---------------------------SRIDLKPGKPQALVLAPTRELAIQVAEAFQKYA 105
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+M+ ++ + I GG Y Q+ L R +++ TPGR+IDH++ G ++ S L+ LVLDEA
Sbjct: 106 THMRGLQVLPIYGGQSYGPQLHSLKRGVHVVVGTPGRVIDHLDKGTLDLSELKYLVLDEA 165
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
D ML MGFI+D+EK++ ATP RQ LFSAT+ ++ +A+ KDP+ + + S
Sbjct: 166 DEMLRMGFIDDVEKVLQATPPQRQVALFSATMPTVIRKIAQRHLKDPVEVTIKSSTTTAA 225
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
NI Q FV +HK L +L + ++F TK+ + +A +L G AA ++G
Sbjct: 226 NIHQRYWFVSG-MHKLDALTRILEAEPFDAMIIFARTKQATEELAGKLQARGLAAAAING 284
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
D+ Q R R ++ L+ G++ ILVATDVAARG+DV I+HVFNYD+P E YVHRIGRTG
Sbjct: 285 DIAQPQRERVIQQLKDGKLDILVATDVAARGLDVERISHVFNYDIPYDTESYVHRIGRTG 344
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQ-----QIP-IEVIN 398
RAGR+G A+ V+ ER + IER T+Q Q+P +EV+N
Sbjct: 345 RAGRSGEAILFVSPRERGMLGAIERATRQPIEQMQLPSVEVVN 387
>gi|325273080|ref|ZP_08139385.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
TJI-51]
gi|324101781|gb|EGB99322.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
TJI-51]
Length = 630
Score = 314 bits (805), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 169/403 (41%), Positives = 252/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ P + +Q R P QPR+LVLTPTRELA QV + +
Sbjct: 61 ERL------FPAGHPDKSQ------------RHGPRQPRVLVLTPTRELAAQVH---DSF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+Y + + +S I GG+ Q+Q +++ ++L+A PGRL+D GK++ +H++ILVL
Sbjct: 100 KVYARDLPLVSACIFGGVGMNPQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI+D++K++ P RQ +LFSAT + ++A+ + +P ++V
Sbjct: 160 DEADRMLDMGFIHDVKKVLARLPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + + HK LL +L+ Q +VFT TK A+ +A+ L G AA
Sbjct: 220 TVERIEQRVYRLP-ASHKRALLAHLITLGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + +++LVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKANSVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+S+V E +K IER T+Q+IP + GF+
Sbjct: 339 RTGRAGRSGEAISMVAPDEEKLLKSIERVTRQRIPDGDLMGFD 381
>gi|429216159|ref|ZP_19207318.1| putative ATP-dependent RNA helicase [Pseudomonas sp. M1]
gi|428153812|gb|EKX00366.1| putative ATP-dependent RNA helicase [Pseudomonas sp. M1]
Length = 441
Score = 314 bits (805), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 169/388 (43%), Positives = 234/388 (60%), Gaps = 28/388 (7%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F LHE +LKAL + +T+PT VQ AIP A+ GRDL V++QTGSGKTAAF+LP LH+
Sbjct: 2 FAQFALHERLLKALETLSFTEPTAVQAAAIPKALEGRDLRVTAQTGSGKTAAFVLPLLHR 61
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKP-AQPRMLVLTPTRELALQVTAATERYG 121
S + KP R L+L PTRELA Q ER+
Sbjct: 62 LLSEE--------------------------KPKTGARALILLPTRELAQQTLKEVERFA 95
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+ IKA I GG + Q L +NPEI++ TPGRL + N+G + +++LVLDEA
Sbjct: 96 QFTF-IKACLITGGEDFKVQGARLRKNPEIIIGTPGRLNEQFNAGNLPLGDVEVLVLDEA 154
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGF D+ K+ A P RQT+LFSAT + M E + ++P L++N + + +
Sbjct: 155 DRMLDMGFAEDVLKLAGACPAQRQTLLFSATAGSGLHAMVEQVLREPESLQLNRVSELNE 214
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
+I Q ++ VDD HK +L +LL ++ +A+VFT T+ AD + RL +G LHG
Sbjct: 215 DIAQQVILVDDNAHKEAILHWLLENETFDKAIVFTNTRVQADRLTGRLIAAGHKVFVLHG 274
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ Q R +E L++G +KILVATDVAARG+DV + V N+D+P+ ++YVHRIGRTG
Sbjct: 275 EKDQKDRKLAIERLKQGAVKILVATDVAARGLDVEGLDLVLNFDMPRRGDEYVHRIGRTG 334
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTK 389
RAG G A+SLV+H++ + IER+ K
Sbjct: 335 RAGEAGLAISLVSHSDWNLMSSIERYLK 362
>gi|411009409|ref|ZP_11385738.1| ATP-dependent RNA helicase RhlE [Aeromonas aquariorum AAK1]
Length = 468
Score = 314 bits (805), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 172/412 (41%), Positives = 241/412 (58%), Gaps = 25/412 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +L+A+ + GY P+ +Q+QAIPA ++GRDL+ ++QTG+GKTA F LP L
Sbjct: 1 MSFTSLGLAEPLLRAVAEQGYDTPSPIQQQAIPAVLAGRDLMAAAQTGTGKTAGFTLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ SK K+ P + R LVLTPTRELA QV + Y
Sbjct: 61 QRLTESKRKV-----------------------SPNRIRALVLTPTRELAAQVGESVRNY 97
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ I++ + GG+ QM R ++L+A PGRL+D N + F ++ILVLDE
Sbjct: 98 GKHLP-IRSHVVFGGVSINPQMMATRRGLDVLVACPGRLMDLYNQNAVKFDEVEILVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI +I+ P RQ +LFSAT + +A + +P +++V
Sbjct: 157 ADRMLDMGFIRDIRRILALLPKKRQNLLFSATFADEIRELATGLLDNPAVIEVTPRNSTA 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q ++ D +K LL +L+ Q +VFT TK A+ +A++L G AA +H
Sbjct: 217 ERIEQ-LVHPCDKANKIALLSHLISSNNWQQVLVFTRTKHIANRVAEKLEKDGISAAAIH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + G ++++VATD+AARG+D+ + V N++LP EDYVHRIGRT
Sbjct: 276 GNKSQGARTRALSGFKDGSVRVMVATDIAARGLDIDKLPQVVNFELPNVAEDYVHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSR 412
GRAG G A+SLV E IK IER TKQ IP E + GFE + SR
Sbjct: 336 GRAGAAGHAISLVAADEGKLIKAIERLTKQSIPCEQVAGFEASRETLDNISR 387
>gi|336451455|ref|ZP_08621893.1| DNA/RNA helicase, superfamily II [Idiomarina sp. A28L]
gi|336281826|gb|EGN75098.1| DNA/RNA helicase, superfamily II [Idiomarina sp. A28L]
Length = 422
Score = 314 bits (805), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 174/403 (43%), Positives = 244/403 (60%), Gaps = 32/403 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+AL GYT PT +QEQAIPA ++ RD++ ++QTG+GKTA F LP L
Sbjct: 1 MSFASLGLCATILEALQAEGYTTPTPIQEQAIPAVLARRDVMAAAQTGTGKTAGFTLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
K+ R KP + R+L+LTPTRELA QV + E Y
Sbjct: 61 EIL------------------------KDGERAKPNEARVLILTPTRELAAQVGESVETY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
+K A+ + GG+ QM L R +IL+ATPGRL+D + F L+ILVLDE
Sbjct: 97 AKGLKLSSAV-VFGGVKINPQMMKLRRGVDILVATPGRLLDLYQQNAVRFPKLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKV---NSIE 237
ADRMLDMGFI+DI++I+ A P RQ +LFSAT + ++A+ + DP+ + V N+
Sbjct: 156 ADRMLDMGFIHDIKRIIKALPANRQNLLFSATFSDEIRDLAKGLVNDPVEISVSPRNTTA 215
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
++ + + +L D K +L LLR + Q +VF+ TK A+ + +L+ GFLA
Sbjct: 216 ERVEQVIYPVLKAD----KPNMLMALLRQLDLPQVLVFSRTKHGANRLVKQLDKGGFLAT 271
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
+HG+ Q AR + L + G+++ILVATD+AARG+D+ + V NYDLP+ EDYVHRI
Sbjct: 272 AIHGNKSQGARTKALHEFKTGKVQILVATDIAARGLDIDQLPFVVNYDLPQVAEDYVHRI 331
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGF 400
GRTGRAG +G A+SLV E +K +ER KQ IP + + GF
Sbjct: 332 GRTGRAGASGNAISLVEGDEVKLLKAVERLIKQDIPQQYMEGF 374
>gi|428151523|ref|ZP_18999239.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|427538506|emb|CCM95377.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
Length = 459
Score = 314 bits (805), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 176/415 (42%), Positives = 247/415 (59%), Gaps = 38/415 (9%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKF----ASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA QV
Sbjct: 61 QRLIQNEPHAKGRRPV--------------------------RALILTPTRELAAQVGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L +IL+ATPGRL+D + ++ ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVSLDKVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPARRQNLLFSATFSDEIKGLAEKLLHNPLEVEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNR---LLDYLLRDKRVGQAVVFTATKRDADIIADRLNISG 293
+ ITQ + FVD KNR LL L+ + Q +VFT TK A+ +A++LN G
Sbjct: 214 NTASEQITQHVHFVD----KNRKRELLSQLIGEGNWQQVLVFTRTKHGANHLAEQLNKDG 269
Query: 294 FLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDY 353
+A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDY
Sbjct: 270 IRSAAIHGNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEELPHVVNYELPNVPEDY 329
Query: 354 VHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
VHRIGRTGRA G A+SLV E ++ IER K++IP I G+EP I+
Sbjct: 330 VHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKEIPRIAIAGYEPDPSIKA 384
>gi|418293496|ref|ZP_12905404.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri ATCC
14405 = CCUG 16156]
gi|379064887|gb|EHY77630.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri ATCC
14405 = CCUG 16156]
Length = 606
Score = 314 bits (805), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 174/402 (43%), Positives = 247/402 (61%), Gaps = 22/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E + A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERL-RFKPAQPRMLVLTPTRELALQVTAATER 119
H +R R+ P QPR+LVLTPTRELA QV + +
Sbjct: 61 ELLFPG-------------------GHPDREHRYGPKQPRVLVLTPTRELAAQVHDSFKV 101
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y + +K+ I GG+ Q+Q +++ ++L+A PGRL+D N I+ SH++ILVLD
Sbjct: 102 YARDLP-LKSTCIFGGVGMNPQIQAVAKGLDVLVACPGRLLDLANQKAIDLSHVEILVLD 160
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 161 EADRMLDMGFIHDVKKVLAKLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTT 220
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+ I Q +F HK LL +L+ Q +VFT TK A+ +A+ L G AA +
Sbjct: 221 VERIEQR-MFRIAASHKRALLAHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAI 279
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HG+ QNAR + L + + +++ILVATD+AARG+D+ + HV N++LP EDYVHRIGR
Sbjct: 280 HGNKSQNARTKALADFKANQVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGR 339
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
TGRAGR+G A+SLV E +K IER TKQ+IP + GF+
Sbjct: 340 TGRAGRSGEAISLVAPDEEKLLKGIERMTKQRIPEGDLMGFD 381
>gi|452748745|ref|ZP_21948520.1| DEAD/DEAH box helicase [Pseudomonas stutzeri NF13]
gi|452007165|gb|EMD99422.1| DEAD/DEAH box helicase [Pseudomonas stutzeri NF13]
Length = 605
Score = 314 bits (805), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 174/402 (43%), Positives = 247/402 (61%), Gaps = 22/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E + A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERL-RFKPAQPRMLVLTPTRELALQVTAATER 119
H +R R+ P QPR+LVLTPTRELA QV + +
Sbjct: 61 ELLFPG-------------------GHPDREHRYGPKQPRVLVLTPTRELAAQVHDSFKI 101
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y + +K+ I GG+ Q+Q +++ ++L+A PGRL+D N I+ SH++ILVLD
Sbjct: 102 YARDLP-LKSAVIFGGVGMNPQIQAVAKGLDVLVACPGRLLDLANQKAIDLSHVEILVLD 160
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 161 EADRMLDMGFIHDVKKVLAKLPAKRQNLLFSATFSKDITDLAAKLLHNPERIEVTPPNTT 220
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+ I Q + V HK LL +L+ Q +VFT TK A+ +A+ L G AA +
Sbjct: 221 VERIEQRVFRVA-ASHKRALLAHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAI 279
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HG+ QNAR + L + + +++ILVATD+AARG+D+ + HV N++LP EDYVHRIGR
Sbjct: 280 HGNKSQNARTKALADFKANQVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGR 339
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
TGRAGR+G A+SLV E +K IER TKQ+IP + GF+
Sbjct: 340 TGRAGRSGEAISLVAPDEEKLLKGIERMTKQRIPEGDLMGFD 381
>gi|206579391|ref|YP_002239559.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae 342]
gi|290510541|ref|ZP_06549911.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. 1_1_55]
gi|206568449|gb|ACI10225.1| putative ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae
342]
gi|289777257|gb|EFD85255.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. 1_1_55]
Length = 451
Score = 314 bits (805), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 176/415 (42%), Positives = 247/415 (59%), Gaps = 38/415 (9%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVMQGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKF----ASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA QV
Sbjct: 61 QRLIDKEPHAKGRRPV--------------------------RALILTPTRELAAQVGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L +IL+ATPGRL+D + ++ ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVSLDSVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPARRQNLLFSATFSDEIKGLAEKLLHNPLEVEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNR---LLDYLLRDKRVGQAVVFTATKRDADIIADRLNISG 293
+ ITQ + FVD KNR LL L+ + Q +VFT TK A+ +A++LN G
Sbjct: 214 NTASEQITQHVHFVD----KNRKRELLSQLIGEGNWQQVLVFTRTKHGANHLAEQLNKDG 269
Query: 294 FLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDY 353
+A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDY
Sbjct: 270 IRSAAIHGNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEELPHVVNYELPNVPEDY 329
Query: 354 VHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
VHRIGRTGRA G A+SLV E ++ IER K++IP I G+EP I+
Sbjct: 330 VHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKEIPRIAIAGYEPDPSIKA 384
>gi|26991657|ref|NP_747082.1| DEAD/DEAH box helicase [Pseudomonas putida KT2440]
gi|24986754|gb|AAN70546.1|AE016697_1 ATP-dependent RNA helicase, DEAD box family [Pseudomonas putida
KT2440]
Length = 626
Score = 314 bits (805), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 175/427 (40%), Positives = 258/427 (60%), Gaps = 25/427 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ P + +Q R P QPR+LVLTPTRELA QV + +
Sbjct: 61 ERL------FPAGHPDKSQ------------RHGPRQPRVLVLTPTRELAAQVH---DSF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+Y + + +S I GG+ Q+Q +++ ++L+A PGRL+D GK++ +H++ILVL
Sbjct: 100 KVYARDLPLVSACIFGGVGMNPQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI+D++K++ P RQ +LFSAT + ++A+ + +P ++V
Sbjct: 160 DEADRMLDMGFIHDVKKVLARLPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + + HK LL +L+ Q +VFT TK A+ +A+ L G AA
Sbjct: 220 TVERIEQRVYRLP-ASHKRALLAHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + +++LVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKANSVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK-RIRTYYSRYRFNN 417
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+ + +R R N
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERVTKQRIADGDLMGFDASQVEAEKPEARERPQN 398
Query: 418 NNWKTHN 424
N N
Sbjct: 399 NGRGGRN 405
>gi|90578695|ref|ZP_01234505.1| putative ATP-dependent RNA helicase, DEAD boxfamily protein
[Photobacterium angustum S14]
gi|90439528|gb|EAS64709.1| putative ATP-dependent RNA helicase, DEAD boxfamily protein
[Photobacterium angustum S14]
Length = 427
Score = 314 bits (805), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 168/402 (41%), Positives = 246/402 (61%), Gaps = 13/402 (3%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+S+ LH +LKAL ++GY+ PT VQ+QAIP A+ G D++ +QTG+GKTAAF LP L
Sbjct: 1 MSFQSLNLHPNLLKALTELGYSTPTDVQQQAIPLALKGDDVMAGAQTGTGKTAAFALPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + ++ + + N HK R R L+LTPTRELA QV + Y
Sbjct: 61 QRLMTLPSQAEQVSTAIENN------HKSRNNI-----RALILTPTRELAQQVYDSITTY 109
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y + IK GG Q++ L+ EIL+ATPGRL+DH+ +G ++ S ++ VLDE
Sbjct: 110 AKYTE-IKVAVAYGGTSMNVQVKALNAGAEILVATPGRLLDHVFNGSVSLSEVETFVLDE 168
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI++I+ P RQT+ FSAT V +A +I +P +++V
Sbjct: 169 ADRMLDMGFIVDIQRIMKRMPAERQTLFFSATFSKQVKKLAFDILTNPKMVEVTPANTAA 228
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q + VD K LL YL+ + Q +VFT TK+ +D +A L + G A+ ++
Sbjct: 229 ETVEQMVYPVDK-HRKAELLAYLIGSRNWRQVLVFTKTKQGSDQLAKDLGLDGIKASSIN 287
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD Q AR R L++ + G+ ++LVATDVAARG+D+ + +V N+D+P EDYVHRIGRT
Sbjct: 288 GDKSQGARQRALDDFKSGKTRVLVATDVAARGLDIEQLEYVVNFDMPFKAEDYVHRIGRT 347
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G A++L++ E +K IE ++P + + G+EP
Sbjct: 348 GRAGMTGHAITLMSLDEEWALKAIEELLDSRLPQQWLEGYEP 389
>gi|398981082|ref|ZP_10689266.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM25]
gi|398133800|gb|EJM22981.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM25]
Length = 625
Score = 314 bits (805), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 173/403 (42%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEDAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ P + +Q R P QPR+LVLTPTRELA QV + +
Sbjct: 61 ERL------FPNGHPDKSQ------------RHGPRQPRVLVLTPTRELAAQVH---DSF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+Y + +K +S I GG+ Q+Q +SR ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 KIYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF++D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 160 DEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L+ G A
Sbjct: 220 TVERIEQRV-FRLPASHKRALLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + +++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKANQVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFD 381
>gi|449052728|ref|ZP_21732359.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae hvKP1]
gi|448875863|gb|EMB10868.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae hvKP1]
Length = 451
Score = 314 bits (804), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 176/415 (42%), Positives = 247/415 (59%), Gaps = 38/415 (9%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKF----ASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA QV
Sbjct: 61 QRLIQNEPHAKGRRPV--------------------------RALILTPTRELAAQVGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L +IL+ATPGRL+D + ++ ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVSLDKVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPARRQNLLFSATFSDEIKGLAEKLLHNPLEVEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNR---LLDYLLRDKRVGQAVVFTATKRDADIIADRLNISG 293
+ ITQ + FVD KNR LL L+ + Q +VFT TK A+ +A++LN G
Sbjct: 214 NTASEQITQHVHFVD----KNRKRELLSQLIGEGNWQQVLVFTRTKHGANHLAEQLNKDG 269
Query: 294 FLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDY 353
+A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDY
Sbjct: 270 IRSAAIHGNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEELPHVVNYELPNVPEDY 329
Query: 354 VHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
VHRIGRTGRA G A+SLV E ++ IER K++IP I G+EP I+
Sbjct: 330 VHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKEIPRIAIAGYEPDPSIKA 384
>gi|358065451|ref|ZP_09151993.1| hypothetical protein HMPREF9473_04056 [Clostridium hathewayi
WAL-18680]
gi|356696343|gb|EHI57960.1| hypothetical protein HMPREF9473_04056 [Clostridium hathewayi
WAL-18680]
Length = 534
Score = 314 bits (804), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 167/394 (42%), Positives = 244/394 (61%), Gaps = 24/394 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M FK + L L+LKAL K GY++P+ +QEQAIP + RDL+ +QTG+GKTAAF LP +
Sbjct: 1 MEFKELNLSPLLLKALEKKGYSQPSPIQEQAIPYVLEKRDLLGCAQTGTGKTAAFALPII 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
N + ++R + KP R L+LTPTRELALQ+ + Y
Sbjct: 61 Q--------------------NLMECPRKRQQKKPI--RALILTPTRELALQIADNIKEY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y +K I GG+ + Q+Q L + +IL+ATPGRL D + +I+ S+++I VLDE
Sbjct: 99 GEYTP-VKGTVIFGGVSAVPQIQDLRKGVDILVATPGRLNDLIGQREIDLSYVEIFVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+D++K++ P RQT+LFSAT+ G + ++A + +P+ ++V +
Sbjct: 158 ADRMLDMGFIHDVKKVIALLPKKRQTLLFSATMPGEIQSLASKLLHNPVKVEVTPVSSTV 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
I S+ +VD +K +LL+YLL+ + + +VFT TK AD ++ L +G AA +H
Sbjct: 218 DMIETSLYYVDKA-NKRKLLEYLLKHEDITSTLVFTRTKHGADQVSKYLTKAGINAAAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD Q AR L N + G++++LVATD+AARGID+ ++ V N+DLP E YVHRIGRT
Sbjct: 277 GDKSQGARQTALNNFKSGKLRVLVATDIAARGIDIEELSCVINFDLPNISETYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
GRAG G A+S E+ ++ IE+ + IP+
Sbjct: 337 GRAGLGGRALSFCAIEEKDYVRDIEKLIGKTIPV 370
>gi|152969387|ref|YP_001334496.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|365139153|ref|ZP_09345663.1| ATP-dependent RNA helicase rhlE [Klebsiella sp. 4_1_44FAA]
gi|378977819|ref|YP_005225960.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|386033962|ref|YP_005953875.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae KCTC 2242]
gi|419974710|ref|ZP_14490127.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|419977806|ref|ZP_14493104.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419987058|ref|ZP_14502183.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419991473|ref|ZP_14506438.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419997938|ref|ZP_14512730.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420003806|ref|ZP_14518449.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420006904|ref|ZP_14521400.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420012540|ref|ZP_14526853.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420020791|ref|ZP_14534976.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420024066|ref|ZP_14538080.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420031055|ref|ZP_14544878.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|420038792|ref|ZP_14552435.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420041896|ref|ZP_14555391.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420046990|ref|ZP_14560308.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420056136|ref|ZP_14569296.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420061472|ref|ZP_14574460.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420064158|ref|ZP_14576968.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|420069526|ref|ZP_14582181.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420078157|ref|ZP_14590617.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420084520|ref|ZP_14596776.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|424829756|ref|ZP_18254484.1| putative ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae
subsp. pneumoniae Ecl8]
gi|424934331|ref|ZP_18352703.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|425077527|ref|ZP_18480630.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|425088160|ref|ZP_18491253.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|425090700|ref|ZP_18493785.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|428940153|ref|ZP_19013245.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae VA360]
gi|150954236|gb|ABR76266.1| putative ATP-dependent RNA helicase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|339761090|gb|AEJ97310.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae KCTC 2242]
gi|363654512|gb|EHL93410.1| ATP-dependent RNA helicase rhlE [Klebsiella sp. 4_1_44FAA]
gi|364517230|gb|AEW60358.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|397345127|gb|EJJ38254.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397345977|gb|EJJ39096.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397353346|gb|EJJ46420.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397361555|gb|EJJ54216.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397363734|gb|EJJ56371.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397368249|gb|EJJ60856.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397381416|gb|EJJ73587.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397385751|gb|EJJ77846.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397387462|gb|EJJ79487.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397399449|gb|EJJ91101.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397400795|gb|EJJ92433.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397403895|gb|EJJ95434.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397417455|gb|EJK08620.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397417749|gb|EJK08912.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397420966|gb|EJK12007.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397430627|gb|EJK21316.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397433767|gb|EJK24410.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397442774|gb|EJK33116.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397445167|gb|EJK35418.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397450132|gb|EJK40246.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|405593236|gb|EKB66688.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|405602292|gb|EKB75434.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|405613678|gb|EKB86407.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|407808518|gb|EKF79769.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|414707181|emb|CCN28885.1| putative ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae
subsp. pneumoniae Ecl8]
gi|426302754|gb|EKV64945.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae VA360]
Length = 451
Score = 314 bits (804), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 176/415 (42%), Positives = 247/415 (59%), Gaps = 38/415 (9%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKF----ASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA QV
Sbjct: 61 QRLIQNEPHAKGRRPV--------------------------RALILTPTRELAAQVGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L +IL+ATPGRL+D + ++ ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVSLDKVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPARRQNLLFSATFSDEIKGLAEKLLHNPLEVEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNR---LLDYLLRDKRVGQAVVFTATKRDADIIADRLNISG 293
+ ITQ + FVD KNR LL L+ + Q +VFT TK A+ +A++LN G
Sbjct: 214 NTASEQITQHVHFVD----KNRKRELLSQLIGEGNWQQVLVFTRTKHGANHLAEQLNKDG 269
Query: 294 FLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDY 353
+A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDY
Sbjct: 270 IRSAAIHGNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEELPHVVNYELPNVPEDY 329
Query: 354 VHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
VHRIGRTGRA G A+SLV E ++ IER K++IP I G+EP I+
Sbjct: 330 VHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKEIPRIAIAGYEPDPSIKA 384
>gi|421918244|ref|ZP_16347776.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|410119452|emb|CCM90401.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
Length = 418
Score = 314 bits (804), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 176/415 (42%), Positives = 247/415 (59%), Gaps = 38/415 (9%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKF----ASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA QV
Sbjct: 61 QRLIQNEPHAKGRRPV--------------------------RALILTPTRELAAQVGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L +IL+ATPGRL+D + ++ ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVSLDKVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPARRQNLLFSATFSDEIKGLAEKLLHNPLEVEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNR---LLDYLLRDKRVGQAVVFTATKRDADIIADRLNISG 293
+ ITQ + FVD KNR LL L+ + Q +VFT TK A+ +A++LN G
Sbjct: 214 NTASEQITQHVHFVD----KNRKRELLSQLIGEGNWQQVLVFTRTKHGANHLAEQLNKDG 269
Query: 294 FLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDY 353
+A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDY
Sbjct: 270 IRSAAIHGNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEELPHVVNYELPNVPEDY 329
Query: 354 VHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
VHRIGRTGRA G A+SLV E ++ IER K++IP I G+EP I+
Sbjct: 330 VHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKEIPRIAIAGYEPDPSIKA 384
>gi|374600905|ref|ZP_09673907.1| DEAD/DEAH box helicase domain protein [Myroides odoratus DSM 2801]
gi|423325478|ref|ZP_17303318.1| hypothetical protein HMPREF9716_02675 [Myroides odoratimimus CIP
103059]
gi|373912375|gb|EHQ44224.1| DEAD/DEAH box helicase domain protein [Myroides odoratus DSM 2801]
gi|404606330|gb|EKB05882.1| hypothetical protein HMPREF9716_02675 [Myroides odoratimimus CIP
103059]
Length = 370
Score = 314 bits (804), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 164/394 (41%), Positives = 246/394 (62%), Gaps = 27/394 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+FK + + + +L+A+ KVGY PT +QEQ IP + GRDLI +QTG+GKTA+F +P L
Sbjct: 1 MSFKKLNIIQPILEAVSKVGYQTPTAIQEQTIPHILQGRDLIGCAQTGTGKTASFAIPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
N ++ K+ R L+LTPTRELA+Q+ + Y
Sbjct: 61 QLL------------NQKSSSKKVI-------------RSLILTPTRELAIQINENFKIY 95
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G +++ ++ +++ GG+P +Q+ L+R +IL+ATPGRL+D +N ++F+H++I+VLDE
Sbjct: 96 GEFLR-LRHLAVFGGVPQKKQVAQLNRGVDILIATPGRLLDLLNQHCLDFNHVEIVVLDE 154
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF+ D++KI+ P RQT+ FSAT+ + +A I ++P+ + V I
Sbjct: 155 ADRMLDMGFVKDVKKILTKIPSKRQTLFFSATMPIEIKKLALQIVRNPIEITVTPISSTA 214
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I QSI FV+ K LL +L+DK + +++VF TK AD + +L G A +H
Sbjct: 215 RTIKQSIYFVEK-EEKLNLLFTILKDKSIKRSLVFARTKHGADKLVKKLASLGIYTAAIH 273
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ QNAR + L + + RI++L+ATD+AARGID+ + HV NY+LP PE YVHRIGRT
Sbjct: 274 GNKSQNARLKALNDFKNNRIRVLIATDIAARGIDIAELPHVLNYELPNEPESYVHRIGRT 333
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
GRAG G AVS + + ++KKIE+ IP+
Sbjct: 334 GRAGVQGTAVSFCDEDQLKDLKKIEKLIGFTIPV 367
>gi|424834031|ref|ZP_18258749.1| ATP-dependent RNA helicase RhlE [Clostridium sporogenes PA 3679]
gi|365979266|gb|EHN15331.1| ATP-dependent RNA helicase RhlE [Clostridium sporogenes PA 3679]
Length = 425
Score = 314 bits (804), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 166/394 (42%), Positives = 242/394 (61%), Gaps = 24/394 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+++ + + + KAL + GY K T +QE++IP + G+DL+ +QTG+GKTAAF +P L
Sbjct: 1 MLFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ K +N+N P R LVL PTRELA+Q+ + E Y
Sbjct: 61 QNLSKDKK--------VNKN--------------PRTIRALVLAPTRELAIQIGESFECY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ +K+ I GG+ Q + L +IL+ATPGR++D N I+ +++ VLDE
Sbjct: 99 GKYIN-LKSAVIFGGVSQNPQTKALREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMG I+D++KI+ P RQ +LFSAT+ + + ++I KDP+ ++V +
Sbjct: 158 ADRMLDMGMIHDVKKIISKLPKVRQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTV 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
ITQ + V K LL +LL+D+ + A+VF+ TKR A++IA L +G A +H
Sbjct: 218 DTITQEVYHVRK-KQKRSLLKHLLKDESIDSALVFSTTKRGANMIAKDLVEAGIEAEAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ QNAR R L N + G I++LVATD+AARGIDV ++HVFNY+LP PE YVHRIGRT
Sbjct: 277 GNKSQNARQRALNNFKEGNIRVLVATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
GRAG G A+S + E ++K IE+ ++IP+
Sbjct: 337 GRAGAKGVAISFCDIEETKSLKAIEKLIHKEIPV 370
>gi|288936404|ref|YP_003440463.1| DEAD/DEAH box helicase [Klebsiella variicola At-22]
gi|288891113|gb|ADC59431.1| DEAD/DEAH box helicase domain protein [Klebsiella variicola At-22]
Length = 451
Score = 314 bits (804), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 176/415 (42%), Positives = 247/415 (59%), Gaps = 38/415 (9%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVMQGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKF----ASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA QV
Sbjct: 61 QRLIDKEPHAKGRRPV--------------------------RALILTPTRELAAQVGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L +IL+ATPGRL+D + ++ ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVSLDSVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPARRQNLLFSATFSDEIKGLAEKLLHNPLEVEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNR---LLDYLLRDKRVGQAVVFTATKRDADIIADRLNISG 293
+ ITQ + FVD KNR LL L+ + Q +VFT TK A+ +A++LN G
Sbjct: 214 NTASEQITQHVHFVD----KNRKRELLSQLIGEGNWQQVLVFTRTKHGANHLAEQLNKDG 269
Query: 294 FLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDY 353
+A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDY
Sbjct: 270 IRSAAIHGNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEELPHVVNYELPNVPEDY 329
Query: 354 VHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
VHRIGRTGRA G A+SLV E ++ IER K++IP I G+EP I+
Sbjct: 330 VHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKEIPRIAIAGYEPDPSIKA 384
>gi|56477991|ref|YP_159580.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
gi|56314034|emb|CAI08679.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
Length = 491
Score = 314 bits (804), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 177/420 (42%), Positives = 249/420 (59%), Gaps = 34/420 (8%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL +L+A+ + GYT PT +Q+QAIP +SGRD++ +QTG+GKTA F LP L
Sbjct: 1 MSFADLGLIPELLRAVAESGYTTPTPIQQQAIPVVLSGRDVMGGAQTGTGKTAGFTLPLL 60
Query: 61 HKFA------SSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVT 114
+ A +S + PV R L+L PTRELA+QV
Sbjct: 61 QRLARHASTSTSPARHPV--------------------------RALILAPTRELAMQVF 94
Query: 115 AATERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQ 174
+ + Y Y+ +++ I GG+ Q+Q L EI++ATPGRL+DH+ I ++
Sbjct: 95 ESVKTYSKYVP-LRSTCIYGGVDMKPQIQDLRNGIEIVVATPGRLLDHVQQKTIQLGQVE 153
Query: 175 ILVLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVN 234
+LVLDEADRMLDMGFI DI +I+D P RQ++LFSAT + +A+ + K+P +++V
Sbjct: 154 MLVLDEADRMLDMGFIPDIRRILDLLPAARQSLLFSATFSDEIKKLADQMLKEPQLIEVA 213
Query: 235 SIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGF 294
+ IT + V L +N LL +LLR + QA+VF ATK +A L G
Sbjct: 214 RRNMVSETITHRVHPVSAGLKRN-LLAHLLRHEPDTQALVFVATKLACSRLAHFLERHGI 272
Query: 295 LAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYV 354
A +HGD Q R TLE + G++++LVATDVAARG+D+ + V N++LP EDYV
Sbjct: 273 AADAIHGDKGQAQRTDTLEAFKSGKLRVLVATDVAARGLDIDDLPSVINFELPHTAEDYV 332
Query: 355 HRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRYR 414
HRIGRTGRAGR G AVSLV+ ER ++ +IE+ K QIP E++ GF+P+ SR R
Sbjct: 333 HRIGRTGRAGRQGNAVSLVSAEERHHLAEIEKLIKLQIPQEIVPGFDPEPDFFETGSRSR 392
>gi|425080638|ref|ZP_18483735.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|428933930|ref|ZP_19007468.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae JHCK1]
gi|405605773|gb|EKB78777.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|426304047|gb|EKV66201.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae JHCK1]
Length = 451
Score = 314 bits (804), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 176/415 (42%), Positives = 247/415 (59%), Gaps = 38/415 (9%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKF----ASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA QV
Sbjct: 61 QRLILNEPHAKGRRPV--------------------------RALILTPTRELAAQVGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L +IL+ATPGRL+D + ++ ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVSLDKVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPARRQNLLFSATFSDEIKGLAEKLLHNPLEVEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNR---LLDYLLRDKRVGQAVVFTATKRDADIIADRLNISG 293
+ ITQ + FVD KNR LL L+ + Q +VFT TK A+ +A++LN G
Sbjct: 214 NTASEQITQHVHFVD----KNRKRELLSQLIGEGNWQQVLVFTRTKHGANHLAEQLNKDG 269
Query: 294 FLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDY 353
+A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDY
Sbjct: 270 IRSAAIHGNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEELPHVVNYELPNVPEDY 329
Query: 354 VHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
VHRIGRTGRA G A+SLV E ++ IER K++IP I G+EP I+
Sbjct: 330 VHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKEIPRIAIAGYEPDPSIKA 384
>gi|421909360|ref|ZP_16339178.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|410116748|emb|CCM81803.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
Length = 463
Score = 314 bits (804), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 176/415 (42%), Positives = 247/415 (59%), Gaps = 38/415 (9%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKF----ASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA QV
Sbjct: 61 QRLIQNEPHAKGRRPV--------------------------RALILTPTRELAAQVGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L +IL+ATPGRL+D + ++ ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVSLDKVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPARRQNLLFSATFSDEIKGLAEKLLHNPLEVEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNR---LLDYLLRDKRVGQAVVFTATKRDADIIADRLNISG 293
+ ITQ + FVD KNR LL L+ + Q +VFT TK A+ +A++LN G
Sbjct: 214 NTASEQITQHVHFVD----KNRKRELLSQLIGEGNWQQVLVFTRTKHGANHLAEQLNKDG 269
Query: 294 FLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDY 353
+A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDY
Sbjct: 270 IRSAAIHGNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEELPHVVNYELPNVPEDY 329
Query: 354 VHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
VHRIGRTGRA G A+SLV E ++ IER K++IP I G+EP I+
Sbjct: 330 VHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKEIPRIAIAGYEPDPSIKA 384
>gi|337278789|ref|YP_004618260.1| ATP-dependent RNA helicase [Ramlibacter tataouinensis TTB310]
gi|334729865|gb|AEG92241.1| Candidate ATP-dependent RNA helicase [Ramlibacter tataouinensis
TTB310]
Length = 606
Score = 314 bits (804), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 177/403 (43%), Positives = 243/403 (60%), Gaps = 22/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F + L +LKA+ + GY PT +Q QAIPA + G DL+ +QTG+GKTAAF LP L
Sbjct: 11 MTFDELKLAPAILKAVREQGYETPTPIQAQAIPAVLEGHDLLAGAQTGTGKTAAFTLPML 70
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
HK + K NK F LVLTPTRELA QV + Y
Sbjct: 71 HKLTKGQGK-----------TNK---------FGKDGIAALVLTPTRELAAQVEESIRTY 110
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ + + I GG+ Q+ + R +IL+ATPGRL+D G ++ S +++LVLDE
Sbjct: 111 GKYLP-LTSTVIFGGVGMNPQIDRIKRGVDILVATPGRLLDLQQQGHLDLSTVEVLVLDE 169
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF+ D++KI+ P +Q++LFSAT + ++A + K+P ++V
Sbjct: 170 ADRMLDMGFLPDVKKILALVPRDKQSLLFSATFSDEIRDLANGLLKNPQSIQVTPRNTTV 229
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ ITQ + V K +LL ++++ Q +VFT TK A+ +A+ LN +G A LH
Sbjct: 230 QRITQVVHPVGR-GKKKQLLAHIIQQHDWSQVLVFTRTKFGANNVAEFLNKNGITAMALH 288
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + L + G I+ LVATD+AARGID+ + HV NY++P PEDYVHRIGRT
Sbjct: 289 GNKSQGARTQALAGFKSGDIRALVATDIAARGIDIDDLPHVVNYEIPNVPEDYVHRIGRT 348
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPK 403
GRAG+ G AVSLV E +++IERFTKQQIP +VI GF P+
Sbjct: 349 GRAGKEGQAVSLVCLDEEGFMQEIERFTKQQIPAQVIEGFGPE 391
>gi|398808043|ref|ZP_10566913.1| DNA/RNA helicase, superfamily II [Variovorax sp. CF313]
gi|398088674|gb|EJL79232.1| DNA/RNA helicase, superfamily II [Variovorax sp. CF313]
Length = 600
Score = 314 bits (804), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 247/403 (61%), Gaps = 22/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
MNF + L +LKA+ + GY PT +Q QAIPA + G DL+ +QTG+GKTAAF LP L
Sbjct: 1 MNFDELKLAPAILKAVHEHGYDTPTPIQAQAIPAVLEGHDLLGGAQTGTGKTAAFTLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
HK + S++ NK F R LVLTPTRELA QV + Y
Sbjct: 61 HKLSMSRSA-----------TNK---------FGGTGIRALVLTPTRELAAQVEESVRTY 100
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y++ + + I GG+ Q+ L + +IL+ATPGRL+D G ++ S +Q+L+LDE
Sbjct: 101 GKYLQ-LDSTVIFGGVGMNPQISKLKKGVDILVATPGRLLDLQQQGMLDLSQVQMLILDE 159
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+D++KI+ P +Q++LFSAT + ++A + K+P ++V
Sbjct: 160 ADRMLDMGFIHDVKKILALVPKEKQSLLFSATFSDEIRDLAATLLKNPQSIQVTPRNTTV 219
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ ITQ I V K LL +++ + + Q +VFT TK A+ +A+ L +G A LH
Sbjct: 220 QRITQVIHPVGR-GKKKALLAHIINENKWSQVLVFTRTKFGANSVAEFLTKNGIEAMALH 278
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR + L + G I+ LVATD+AARGID+ + HV NY++P EDYVHRIGRT
Sbjct: 279 GNKSQSARTQALAGFKTGDIRALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRT 338
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPK 403
GRAG +G AVS V E +++IERFTKQ IP++++ GF P+
Sbjct: 339 GRAGSSGEAVSFVCLDEEGFMQEIERFTKQTIPVQIVEGFGPE 381
>gi|222055835|ref|YP_002538197.1| DEAD/DEAH box helicase [Geobacter daltonii FRC-32]
gi|221565124|gb|ACM21096.1| DEAD/DEAH box helicase domain protein [Geobacter daltonii FRC-32]
Length = 446
Score = 314 bits (804), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 169/400 (42%), Positives = 237/400 (59%), Gaps = 25/400 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L A+ GYT PT +Q QAIP G DL+ +QTG+GKTAAF LP +
Sbjct: 1 MSFDSLGLRVELLTAIASQGYTMPTPIQTQAIPVIFEGCDLLAGAQTGTGKTAAFALPIV 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ IP K+ +PR LVL PTRELA QV+ Y
Sbjct: 61 QMLGEN---IPPEKRR--------------------RPRALVLVPTRELAAQVSEQMNNY 97
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
+ +++ I GG+ Q++ L R +I++ATPGRL+DH G +N S ++ LVLDE
Sbjct: 98 ARRLS-LRSTMIYGGVNIQAQIERLHRGVDIVVATPGRLLDHAERGTVNLSRIKFLVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLD+GFI+ I+K+ + PV RQT+LFSAT + +A+ + P ++V
Sbjct: 157 ADRMLDLGFIDAIQKVAEYLPVKRQTLLFSATYSQSIKQLADELLNKPRRIEVARSNIAA 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+TQ+I V+ K +L +L+ + Q +VF T+ AD + + L G AA +H
Sbjct: 217 DAVTQAIYQVEKS-RKREMLSFLISRGKWNQVLVFARTRYGADKLTEELLYDGIKAAAIH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
+ Q+ RNRTL RRG ++LVATDVAARG+D+ + HV NYDLP+ PEDYVHRIGRT
Sbjct: 276 SNKSQSIRNRTLAEFRRGEFRVLVATDVAARGLDIEQLPHVVNYDLPQVPEDYVHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGF 400
GRAG+ G A+SLV+H E+ +K IE+ K IP++ + F
Sbjct: 336 GRAGKEGIALSLVSHEEQPLLKAIEKLLKYAIPLQTLAEF 375
>gi|262041112|ref|ZP_06014330.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259041562|gb|EEW42615.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 519
Score = 314 bits (804), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 176/415 (42%), Positives = 247/415 (59%), Gaps = 38/415 (9%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 69 MSFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 128
Query: 61 HKF----ASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA QV
Sbjct: 129 QRLIQNEPHAKGRRPV--------------------------RALILTPTRELAAQVGEN 162
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L +IL+ATPGRL+D + ++ ++IL
Sbjct: 163 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVSLDKVEIL 221
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 222 VLDEADRMLDMGFIHDIRRVLAKLPARRQNLLFSATFSDEIKGLAEKLLHNPLEVEVARR 281
Query: 237 EKKQKNITQSILFVDDILHKNR---LLDYLLRDKRVGQAVVFTATKRDADIIADRLNISG 293
+ ITQ + FVD KNR LL L+ + Q +VFT TK A+ +A++LN G
Sbjct: 282 NTASEQITQHVHFVD----KNRKRELLSQLIGEGNWQQVLVFTRTKHGANHLAEQLNKDG 337
Query: 294 FLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDY 353
+A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDY
Sbjct: 338 IRSAAIHGNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEELPHVVNYELPNVPEDY 397
Query: 354 VHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
VHRIGRTGRA G A+SLV E ++ IER K++IP I G+EP I+
Sbjct: 398 VHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKEIPRIAIAGYEPDPSIKA 452
>gi|334705050|ref|ZP_08520916.1| putative ATP-dependent RNA helicase RhlE [Aeromonas caviae Ae398]
Length = 466
Score = 314 bits (804), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 172/401 (42%), Positives = 239/401 (59%), Gaps = 25/401 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +L+A+ + GY P+ +Q+QAIPA ++GRDL+ ++QTG+GKTA F LP L
Sbjct: 1 MSFTSLGLAEPLLRAVAEQGYDTPSPIQQQAIPAVLAGRDLMAAAQTGTGKTAGFTLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ SK K+ P + R LVLTPTRELA QV + Y
Sbjct: 61 QRLTESKRKV-----------------------SPNRIRALVLTPTRELAAQVGESVRNY 97
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ I++ + GG+ QM R ++L+A PGRL+D N + F ++ILVLDE
Sbjct: 98 GKHLP-IRSHVVFGGVSINPQMMATRRGLDVLVACPGRLMDLYNQNAVKFDEVEILVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI +I+ P RQ +LFSAT + +A + +P +++V
Sbjct: 157 ADRMLDMGFIRDIRRILALLPKKRQNLLFSATFADEIRELATGLLDNPAVIEVTPRNSTA 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q ++ D +K LL +L+ Q +VFT TK A+ +A+ L+ +G AA +H
Sbjct: 217 ERIEQ-LVHPCDKANKIALLSHLVTSNDWQQVLVFTRTKHMANRVAETLDKNGVSAAAIH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + G +K+LVATD+AARG+D+ + V N++LP EDYVHRIGRT
Sbjct: 276 GNKSQGARTRALAGFKDGSVKVLVATDIAARGLDIDKLPQVVNFELPNVAEDYVHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
GRAG G A+SLV E IK IER TKQ IP E + GFE
Sbjct: 336 GRAGAAGHAISLVAADEGKLIKAIERLTKQNIPCEQVAGFE 376
>gi|90022842|ref|YP_528669.1| dystroglycan-type cadherin-like protein [Saccharophagus degradans
2-40]
gi|89952442|gb|ABD82457.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40]
Length = 516
Score = 313 bits (803), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 178/402 (44%), Positives = 238/402 (59%), Gaps = 22/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F +GL + KA+++ GY PT +Q QAIP + GRD++ ++QTG+GKTA F LP L
Sbjct: 18 MKFAELGLCPAIQKAVLEQGYETPTPIQAQAIPPVLEGRDVMAAAQTGTGKTAGFTLPIL 77
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
A +N K+ KP Q R LVLTPTRELA QV Y
Sbjct: 78 EILAEGI-----------ENGRKV---------KPNQARALVLTPTRELAAQVGENVALY 117
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ IK+ + GG+ QM L +IL+ATPGRL+D N + F L++LVLDE
Sbjct: 118 GKYLP-IKSTIVFGGVKINPQMMKLRGGVDILVATPGRLMDLYNQRAVKFDQLEMLVLDE 176
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI KI+ P RQ ++FSAT + +A++I +P+ + VN
Sbjct: 177 ADRMLDMGFIHDIRKIMAILPKKRQNLMFSATFSQDIRELAKSIVNNPVEITVNPPNSTA 236
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ Q I VD K LL +L++ + Q +VF+ TK A+ + +L SG AA +H
Sbjct: 237 TRVKQWICPVDK-KEKPALLTHLIKTNKWQQVLVFSRTKHGANKLVKQLEGSGLRAAAIH 295
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + L + G +KILVATD+AARG+D+ + V N+DLP+ EDYVHRIGRT
Sbjct: 296 GNKSQGARTKALAEFKNGTVKILVATDIAARGLDIDQLPQVVNFDLPQVAEDYVHRIGRT 355
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G AVSLV+ E +K+IER TK + EVI GFEP
Sbjct: 356 GRAGAEGNAVSLVSADEFQMLKEIERLTKTLLTREVIQGFEP 397
>gi|330829717|ref|YP_004392669.1| ATP-dependent RNA helicase RhlE [Aeromonas veronii B565]
gi|423209590|ref|ZP_17196144.1| hypothetical protein HMPREF1169_01662 [Aeromonas veronii AER397]
gi|328804853|gb|AEB50052.1| ATP-dependent RNA helicase RhlE [Aeromonas veronii B565]
gi|404617448|gb|EKB14384.1| hypothetical protein HMPREF1169_01662 [Aeromonas veronii AER397]
Length = 466
Score = 313 bits (803), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 172/404 (42%), Positives = 240/404 (59%), Gaps = 25/404 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +L+A+ + GY P+ +Q+QAIPA ++GRDL+ ++QTG+GKTA F LP L
Sbjct: 1 MSFTSLGLAEPLLRAVAEQGYDTPSPIQQQAIPAVLAGRDLMAAAQTGTGKTAGFTLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ SK K+ P + R LVLTPTRELA QV + Y
Sbjct: 61 QRLMESKRKV-----------------------SPNRVRALVLTPTRELAAQVGESVRNY 97
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +++ + GG+ QM R ++L+A PGRLID N + F ++ILVLDE
Sbjct: 98 GKHLP-MRSHVVFGGVSINPQMMATRRGLDVLVACPGRLIDLYNQNAVKFDEVEILVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI +I+ P RQ +LFSAT + +A + +P +++V
Sbjct: 157 ADRMLDMGFIRDIRRILALMPKKRQNLLFSATFADEIRELATGLLDNPAVIEVAPRNSTA 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q ++ D +K LL +L+ Q +VFT TK A+ +A+ L+ +G AA +H
Sbjct: 217 ERIEQ-LVHPCDKANKIALLSHLVTSNNWQQVLVFTRTKHMANRVAETLDKNGVSAAAIH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + G +K+LVATD+AARG+D+ + V N++LP EDYVHRIGRT
Sbjct: 276 GNKSQGARTRALAGFKDGSVKVLVATDIAARGLDIDKLPQVVNFELPNVAEDYVHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRAG G A+SLV E IK IER TKQ IP E + GFE +
Sbjct: 336 GRAGAAGHAISLVAADEGKLIKAIERLTKQSIPCEQVAGFEASR 379
>gi|149910407|ref|ZP_01899049.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
gi|149806555|gb|EDM66524.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
Length = 460
Score = 313 bits (803), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 165/405 (40%), Positives = 247/405 (60%), Gaps = 27/405 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+ G+ ++ ++ +G+ + T VQE AIP + G D++ +SQTGSGKT A+ LP L
Sbjct: 1 MRFQDFGIDPRLISSIEHLGFEQATEVQEAAIPLILGGCDIMATSQTGSGKTIAYGLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + RF+ R ++L PTRELA+QV A +
Sbjct: 61 QRMLKQR------------------------RFEHRAVRAVILAPTRELAIQVHANMKHL 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G+ + + I+G + Q +LL +NPE+L+ATPGRL+DH+ I+ HL+ LVLDE
Sbjct: 97 GMSLD-YQIQLIIGRESFQHQEKLLRKNPEVLIATPGRLLDHIREKSISLEHLEFLVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATP-VTRQTMLFSATLDGI-VGNMAENITKDPLILKVNSIEK 238
ADRMLDMGF +D+ I ++ P V RQTMLFSATL+ + V N+ + + P +++N
Sbjct: 156 ADRMLDMGFRDDVSAISNSAPNVKRQTMLFSATLEHVDVANICNQVLRAPERIEINRSND 215
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ + I Q + F D++ HK L +L++ + Q ++FTATK D + +A L + A
Sbjct: 216 QHEKIEQRLFFSDNLTHKEEQLVHLVKSEDYRQLLIFTATKLDTERLAKLLMDNDIDATS 275
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HGD+ QN R RTLE+ RRGR+ +LVATDVAARG+D+ ++HV N+DLP PED++HR G
Sbjct: 276 IHGDMLQNQRKRTLEDFRRGRVGVLVATDVAARGLDIRTLSHVINFDLPINPEDFIHRTG 335
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPK 403
RTGRAG G A+SLV+ + + KI+ + K ++P ++ GFE K
Sbjct: 336 RTGRAGATGIAISLVSPKDWTSFGKIQSYLKVKLPCTMLEGFEAK 380
>gi|148550055|ref|YP_001270157.1| DEAD/DEAH box helicase [Pseudomonas putida F1]
gi|148514113|gb|ABQ80973.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
Length = 627
Score = 313 bits (803), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 175/427 (40%), Positives = 258/427 (60%), Gaps = 25/427 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ P + +Q R P QPR+LVLTPTRELA QV + +
Sbjct: 61 ERL------FPAGHPDKSQ------------RHGPRQPRVLVLTPTRELAAQVH---DSF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+Y + + +S I GG+ Q+Q +++ ++L+A PGRL+D GK++ +H++ILVL
Sbjct: 100 KVYARDLPLVSACIFGGVGMNPQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI+D++K++ P RQ +LFSAT + ++A+ + +P ++V
Sbjct: 160 DEADRMLDMGFIHDVKKVLARLPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + + HK LL +L+ Q +VFT TK A+ +A+ L G AA
Sbjct: 220 TVERIEQRVYRLP-ASHKRALLAHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + +++LVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKANSVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK-RIRTYYSRYRFNN 417
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+ + +R R N
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERVTKQRIADGDLMGFDASQVEAEKPETRERPQN 398
Query: 418 NNWKTHN 424
N N
Sbjct: 399 NGRGGRN 405
>gi|421496206|ref|ZP_15943443.1| ATP-dependent RNA helicase RhlE [Aeromonas media WS]
gi|407184751|gb|EKE58571.1| ATP-dependent RNA helicase RhlE [Aeromonas media WS]
Length = 466
Score = 313 bits (803), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 172/404 (42%), Positives = 240/404 (59%), Gaps = 25/404 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +L+A+ + GY P+ +Q+QAIPA ++GRDL+ ++QTG+GKTA F LP L
Sbjct: 1 MSFTSLGLAEPLLRAVAEQGYDTPSPIQQQAIPAVLAGRDLMAAAQTGTGKTAGFTLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ SK K+ P + R LVLTPTRELA QV + Y
Sbjct: 61 QRLTESKRKV-----------------------SPNRIRALVLTPTRELAAQVGESVRNY 97
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ I++ + GG+ QM R ++L+A PGRL+D N + F ++ILVLDE
Sbjct: 98 GKHLP-IRSHVVFGGVSINPQMMATRRGLDVLVACPGRLMDLYNQNAVKFDEVEILVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI +I+ P RQ +LFSAT + +A + +P +++V
Sbjct: 157 ADRMLDMGFIRDIRRILALLPKKRQNLLFSATFAEEIRELATGLLDNPAVIEVAPRNSTA 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q ++ D +K LL +L+ Q +VFT TK A+ +A+ L+ +G AA +H
Sbjct: 217 ERIEQ-LVHPCDKANKIALLSHLVTSNDWQQVLVFTRTKHMANRVAETLDKNGVSAAAIH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + G +K+LVATD+AARG+D+ + V N++LP EDYVHRIGRT
Sbjct: 276 GNKSQGARTRALAGFKEGSVKVLVATDIAARGLDIDKLPQVVNFELPNVAEDYVHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRAG G A+SLV E IK IER TKQ IP E + GFE +
Sbjct: 336 GRAGAAGHAISLVAADEGKLIKAIERLTKQNIPCEQVAGFEASR 379
>gi|238893853|ref|YP_002918587.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|402781658|ref|YP_006637204.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|238546169|dbj|BAH62520.1| putative ATP-dependent RNA helicase [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|402542534|gb|AFQ66683.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae 1084]
Length = 451
Score = 313 bits (803), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 176/415 (42%), Positives = 247/415 (59%), Gaps = 38/415 (9%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKF----ASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA QV
Sbjct: 61 QRLIQNEPHAKGRRPV--------------------------RALILTPTRELAAQVGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L +IL+ATPGRL+D + ++ ++IL
Sbjct: 95 VCDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVSLDKVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPARRQNLLFSATFSDEIKGLAEKLLHNPLEVEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNR---LLDYLLRDKRVGQAVVFTATKRDADIIADRLNISG 293
+ ITQ + FVD KNR LL L+ + Q +VFT TK A+ +A++LN G
Sbjct: 214 NTASEQITQHVHFVD----KNRKRELLSQLIGEGNWQQVLVFTRTKHGANHLAEQLNKDG 269
Query: 294 FLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDY 353
+A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDY
Sbjct: 270 IRSAAIHGNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEELPHVVNYELPNVPEDY 329
Query: 354 VHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
VHRIGRTGRA G A+SLV E ++ IER K++IP I G+EP I+
Sbjct: 330 VHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKEIPRIAIAGYEPDPSIKA 384
>gi|154253690|ref|YP_001414514.1| DEAD/DEAH box helicase [Parvibaculum lavamentivorans DS-1]
gi|154157640|gb|ABS64857.1| DEAD/DEAH box helicase domain protein [Parvibaculum lavamentivorans
DS-1]
Length = 504
Score = 313 bits (803), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 168/393 (42%), Positives = 234/393 (59%), Gaps = 27/393 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F +GL VLKA+ + GYT+PT +Q QAIP ++GRD++ +QTG+GKTA+F LP +
Sbjct: 1 MTFDELGLAPEVLKAVSETGYTEPTPIQAQAIPHVLAGRDVLGIAQTGTGKTASFTLPMI 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
K + R R + PR L+L PTRELA QV E Y
Sbjct: 61 DKLS-------------------------RGRARARMPRSLILEPTRELAAQVAENFETY 95
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y K A+ ++GG+ + Q + L R ++L+ATPGRL+DH N GK+ + +QILV+DE
Sbjct: 96 GKYNKLSMAL-LIGGVSFGDQEKKLDRGVDVLIATPGRLLDHCNRGKVLLTGVQILVIDE 154
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DIE+I P TRQT+ FSAT+ + + + +P ++V
Sbjct: 155 ADRMLDMGFIPDIEEICKKLPFTRQTLFFSATMPPEIQRLTDTFLHNPERIEVARASSTS 214
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
NI Q +L K +L ++ + V A++F KRD ++ L+ SG A +H
Sbjct: 215 ANIKQ-VLLKTTRDGKRDVLQRMIEEDNVKNAIIFCNRKRDVSVLERALSKSGLSAGAIH 273
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GDL Q+ R RTL+ R G I++LVA+DVAARG+D+P ++HVFNYD+P EDYVHRIGRT
Sbjct: 274 GDLDQSTRTRTLDGFRNGTIRLLVASDVAARGLDIPDVSHVFNYDVPSHAEDYVHRIGRT 333
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIP 393
GRAG++G AV+L + + IE+ IP
Sbjct: 334 GRAGKSGTAVTLSTREDGKYLAAIEKLIGNPIP 366
>gi|170719671|ref|YP_001747359.1| DEAD/DEAH box helicase [Pseudomonas putida W619]
gi|169757674|gb|ACA70990.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
Length = 630
Score = 313 bits (803), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 174/427 (40%), Positives = 258/427 (60%), Gaps = 25/427 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ P + +Q R P QPR+LVLTPTRELA QV + +
Sbjct: 61 ERL------FPAGHPDKSQ------------RHGPRQPRVLVLTPTRELAAQVH---DSF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+Y + + +S I GG+ Q+Q +++ ++L+A PGRL+D G+++ +H++ILVL
Sbjct: 100 KVYARDLPLVSACIFGGVGMNPQIQAIAKGVDVLVACPGRLLDLAGQGRVDLAHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI+D++K++ P RQ +LFSAT + ++A+ + +P ++V
Sbjct: 160 DEADRMLDMGFIHDVKKVLARLPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + + HK LL +L+ Q +VFT TK A+ +A+ L G AA
Sbjct: 220 TVERIEQRVYRLP-ASHKRALLAHLITLGAWEQVLVFTRTKHGANRLAEYLEKHGLSAAA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + +++LVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKANSVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK-RIRTYYSRYRFNN 417
RTGRAGR+G A+SLV E +K IER T+Q+I + GF+P + R R N
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERVTRQKIADGDLMGFDPSQVEAEKPEVRERPQN 398
Query: 418 NNWKTHN 424
N N
Sbjct: 399 NGRGGRN 405
>gi|429210560|ref|ZP_19201727.1| putative ATP-dependent RNA helicase [Pseudomonas sp. M1]
gi|428159334|gb|EKX05880.1| putative ATP-dependent RNA helicase [Pseudomonas sp. M1]
Length = 664
Score = 313 bits (803), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 172/404 (42%), Positives = 247/404 (61%), Gaps = 22/404 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E + +A+ GY++PT VQE+AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFSSLGLSEALARAVEAAGYSQPTPVQERAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERL-RFKPAQPRMLVLTPTRELALQVTAATER 119
+ H +R R P Q R+LVLTPTRELA QV + +
Sbjct: 61 ERLFPE-------------------GHPDREHRHGPRQARVLVLTPTRELAAQVHDSFKV 101
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y + +K+ I GG+ Q+Q +S+ ++L+A PGRL+D + G ++ S ++ILVLD
Sbjct: 102 YARDLP-LKSACIFGGVGMNPQVQAMSKGVDVLVACPGRLLDLIGQGSVDLSRVEILVLD 160
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 161 EADRMLDMGFIHDVKKVLAKLPPKRQNLLFSATFSKDITDLANKLLHNPERIEVTPPNTT 220
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+ I Q + + K LL +L+ Q +VFT TK A+ +A+ L+ G AA +
Sbjct: 221 VERIEQRVFRIPSA-QKRALLAHLVTVGAWEQVLVFTRTKHGANRLAEYLSKHGLPAAAI 279
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HG+ QNAR + L + + ++ILVATD+AARG+D+ + HV NY+LP EDYVHRIGR
Sbjct: 280 HGNKSQNARTKALADFKTNDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGR 339
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPK 403
TGRAGR+G A+SLV E +K IER T+QQIP GF+P+
Sbjct: 340 TGRAGRSGEAISLVAPDEEKLLKAIERLTRQQIPAGDTQGFDPE 383
>gi|423196565|ref|ZP_17183148.1| hypothetical protein HMPREF1171_01180 [Aeromonas hydrophila SSU]
gi|404632019|gb|EKB28648.1| hypothetical protein HMPREF1171_01180 [Aeromonas hydrophila SSU]
Length = 468
Score = 313 bits (803), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 170/401 (42%), Positives = 238/401 (59%), Gaps = 25/401 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +L+A+ + GY P+ +Q+QAIPA ++GRDL+ ++QTG+GKTA F LP L
Sbjct: 1 MSFTSLGLAEPLLRAVAEQGYDTPSPIQQQAIPAVLAGRDLMAAAQTGTGKTAGFTLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ SK K+ P + R LVLTPTRELA QV + Y
Sbjct: 61 QRLTESKRKV-----------------------SPNRIRALVLTPTRELAAQVGESVRNY 97
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ I++ + GG+ QM R ++L+A PGRL+D N + F ++ILVLDE
Sbjct: 98 GKHLP-IRSHVVFGGVSINPQMMATRRGLDVLVACPGRLMDLYNQNAVKFDEVEILVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI +I+ P RQ +LFSAT + +A + +P +++V
Sbjct: 157 ADRMLDMGFIRDIRRILALLPKKRQNLLFSATFADEIRELATGLLDNPAVIEVTPRNSTA 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q ++ D +K LL +L+ Q +VFT TK A+ +A++L G AA +H
Sbjct: 217 ERIEQ-LVHPCDKANKIALLSHLISSNNWQQVLVFTRTKHIANRVAEKLEKDGISAAAIH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + G ++++VATD+AARG+D+ + V N++LP EDYVHRIGRT
Sbjct: 276 GNKSQGARTRALSGFKDGSVRVMVATDIAARGLDIDKLPQVVNFELPNVAEDYVHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
GRAG G A+SLV E IK IER TKQ IP E + GFE
Sbjct: 336 GRAGAAGHAISLVAADEGKLIKAIERLTKQSIPCEQVAGFE 376
>gi|351729711|ref|ZP_08947402.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax
radicis N35]
Length = 617
Score = 313 bits (803), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 243/402 (60%), Gaps = 22/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F + L +LKA+ + GY PT +Q QAIPA ++G DL+ +QTG+GKTAAF LP L
Sbjct: 7 MTFDELNLAPAILKAVHETGYETPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPLL 66
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ + S KN +F R LVLTPTRELA QV + Y
Sbjct: 67 HRLSQS-----AAPKN---------------KFGGKGIRALVLTPTRELAAQVEESVREY 106
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ I + + GG+ Q+ + R +IL+ATPGRL+D G ++ S +Q+LVLDE
Sbjct: 107 GKYLD-INSTVVFGGVGMNPQIDRIKRGVDILVATPGRLLDLQQQGFLDLSTVQVLVLDE 165
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+D++K++ P +Q++LFSAT + ++A + K+P ++V
Sbjct: 166 ADRMLDMGFIHDVKKVLALVPREKQSLLFSATFSDEIRDLANTLLKNPQSIQVTPSNTTV 225
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ ITQ I V K LL ++++ Q +VFT TK A+ +A+ L +G A LH
Sbjct: 226 QRITQVIHPVGRGKKKQVLL-HIIQQHNWSQVLVFTRTKFGANNVAEFLTKNGVNAMALH 284
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR + L + G I+ LVATD+AARGID+ + HV NY++P EDYVHRIGRT
Sbjct: 285 GNKSQSARTQALAGFKSGDIRALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRT 344
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG +G AVSLV E + IERFTKQQIP+++I GF P
Sbjct: 345 GRAGNSGEAVSLVCMDEEGFMMDIERFTKQQIPVQIIEGFGP 386
>gi|421523635|ref|ZP_15970264.1| DEAD/DEAH box helicase [Pseudomonas putida LS46]
gi|402752621|gb|EJX13126.1| DEAD/DEAH box helicase [Pseudomonas putida LS46]
Length = 630
Score = 313 bits (803), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 175/427 (40%), Positives = 258/427 (60%), Gaps = 25/427 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ P + +Q R P QPR+LVLTPTRELA QV + +
Sbjct: 61 ERL------FPAGHPDKSQ------------RHGPRQPRVLVLTPTRELAAQVH---DSF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+Y + + +S I GG+ Q+Q +++ ++L+A PGRL+D GK++ +H++ILVL
Sbjct: 100 KVYARDLPLVSACIFGGVGMNPQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI+D++K++ P RQ +LFSAT + ++A+ + +P ++V
Sbjct: 160 DEADRMLDMGFIHDVKKVLARLPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + + HK LL +L+ Q +VFT TK A+ +A+ L G AA
Sbjct: 220 TVERIEQRVYRLP-ASHKRALLAHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + +++LVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKANSVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK-RIRTYYSRYRFNN 417
RTGRAGR+G A+SLV E +K IER TKQ+I + GF+ + +R R N
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERVTKQRIADGDLMGFDASQVEAEKPETRERPQN 398
Query: 418 NNWKTHN 424
N N
Sbjct: 399 NGRGGRN 405
>gi|224370360|ref|YP_002604524.1| putative helicase of superfamily II [Desulfobacterium autotrophicum
HRM2]
gi|223693077|gb|ACN16360.1| putative helicase of superfamily II [Desulfobacterium autotrophicum
HRM2]
Length = 402
Score = 313 bits (803), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 168/400 (42%), Positives = 244/400 (61%), Gaps = 27/400 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+ GL +L+A+ GY +PT +Q+QAIP + G D++ +QTG+GKTAAF LP L
Sbjct: 1 MSFEIFGLRAELLRAVAAEGYKEPTPIQDQAIPVVLRGEDVLAGAQTGTGKTAAFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ L++ + + YT PR LVL PTRELA QV A+ E
Sbjct: 61 --------------EMLSKTSKRTYT-----------PRCLVLAPTRELAAQVQASFESL 95
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G + +++ + GG+ Q+ L + +IL+ATPGRL+DH ++ S ++ILVLDE
Sbjct: 96 GRSLH-LRSTVVFGGVGIQPQIDKLKKGVDILVATPGRLLDHAGRRTLDLSKVEILVLDE 154
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI+K++ P RQ +LFSAT + A+ + +P I++V++ K
Sbjct: 155 ADRMLDMGFIHDIKKVLKLLPGKRQNLLFSATYSTEIKRFADGLLNNPKIIEVSASNKAA 214
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+TQ++ V K LL L+R++ + +VFT TK A+ + +L G AA +H
Sbjct: 215 DGVTQAVYPVQKT-KKRELLSTLIRNENWTKVLVFTRTKHGANRLTKQLITDGIKAAAIH 273
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+ R R L + + G IK LVATD+AARG+D+ + HV NYDLP PEDYVHRIGRT
Sbjct: 274 GNKSQSTRTRALADFKNGSIKALVATDIAARGLDIDMLPHVVNYDLPNVPEDYVHRIGRT 333
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGF 400
GRAG G A+SLV E+ +K+I+R K IP++ ++GF
Sbjct: 334 GRAGATGIALSLVCSDEQKQLKEIQRLLKHNIPVKTMDGF 373
>gi|330009971|ref|ZP_08306668.1| ATP-dependent RNA helicase RhlE, partial [Klebsiella sp. MS 92-3]
gi|328534645|gb|EGF61216.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. MS 92-3]
Length = 509
Score = 313 bits (803), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 176/415 (42%), Positives = 247/415 (59%), Gaps = 38/415 (9%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 59 MSFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 118
Query: 61 HKF----ASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA QV
Sbjct: 119 QRLIQNEPHAKGRRPV--------------------------RALILTPTRELAAQVGEN 152
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L +IL+ATPGRL+D + ++ ++IL
Sbjct: 153 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVSLDKVEIL 211
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 212 VLDEADRMLDMGFIHDIRRVLAKLPARRQNLLFSATFSDEIKGLAEKLLHNPLEVEVARR 271
Query: 237 EKKQKNITQSILFVDDILHKNR---LLDYLLRDKRVGQAVVFTATKRDADIIADRLNISG 293
+ ITQ + FVD KNR LL L+ + Q +VFT TK A+ +A++LN G
Sbjct: 272 NTASEQITQHVHFVD----KNRKRELLSQLIGEGNWQQVLVFTRTKHGANHLAEQLNKDG 327
Query: 294 FLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDY 353
+A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDY
Sbjct: 328 IRSAAIHGNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEELPHVVNYELPNVPEDY 387
Query: 354 VHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
VHRIGRTGRA G A+SLV E ++ IER K++IP I G+EP I+
Sbjct: 388 VHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKEIPRIAIAGYEPDPSIKA 442
>gi|241766307|ref|ZP_04764197.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
gi|241363561|gb|EER58995.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
Length = 448
Score = 313 bits (803), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 177/403 (43%), Positives = 244/403 (60%), Gaps = 22/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+ + L +LKA+ + GY PT +Q QAIPA + G DL+ +QTG+GKTAAF LP L
Sbjct: 1 MKFEELNLAPAILKAVQETGYETPTPIQAQAIPAVLEGHDLLAGAQTGTGKTAAFTLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ S+ P KN +F R LVLTPTRELA QV + Y
Sbjct: 61 HRL--SQGTAP---KN---------------KFGGKGIRALVLTPTRELAAQVEESVREY 100
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ I + + GG+ Q+ + R +IL+ATPGRL+D G ++ S +++LVLDE
Sbjct: 101 GKYLD-INSTVVFGGVGMNPQIDRIKRGVDILVATPGRLLDLQQQGFLDLSTVEVLVLDE 159
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+D++K++ P +Q++LFSAT + +A + K+P ++V
Sbjct: 160 ADRMLDMGFIHDVKKVLALVPKDKQSLLFSATFSDEIRELANTLLKNPQSIQVTPSNTTV 219
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ ITQ I V K LL ++++ Q +VFT TK A+ +A+ L +G A LH
Sbjct: 220 QRITQVIHPVGRGKKKQVLL-HIIQQHNWSQVLVFTRTKFGANNVAEFLTKNGVQAMALH 278
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR + L + G I+ LVATD+AARGID+ + HV NY++P EDYVHRIGRT
Sbjct: 279 GNKSQSARTQALAGFKSGEIRALVATDIAARGIDIDDLPHVVNYEIPNVSEDYVHRIGRT 338
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPK 403
GRAG +G AVSLV E + IERFTKQQIP++VI GF P+
Sbjct: 339 GRAGASGEAVSLVCMDEEGFMMDIERFTKQQIPVQVIEGFGPE 381
>gi|91775307|ref|YP_545063.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
KT]
gi|91775451|ref|YP_545207.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
KT]
gi|91709294|gb|ABE49222.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
KT]
gi|91709438|gb|ABE49366.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
KT]
gi|167042456|gb|ABZ07182.1| putative DEAD/DEAH box helicase [uncultured marine microorganism
HF4000_ANIW133B20]
Length = 515
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 166/406 (40%), Positives = 247/406 (60%), Gaps = 26/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F +GL E +L+A+ GYT PT +Q QAIP ++G DL+ +QTG+GKTA F LP L
Sbjct: 12 LQFSDLGLAEPILRAIADTGYTHPTPIQAQAIPLVLNGGDLLAGAQTGTGKTAGFTLPVL 71
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H H + ++ KP QPR L+LTPTRELA QV + + Y
Sbjct: 72 H-----------------------LLHAKPVKVKPGQPRCLILTPTRELAAQVEESVQTY 108
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++K + ++ + GG+ Q++ L + +IL+ATPGRL+DH I+ S ++ILVLDE
Sbjct: 109 GKHLK-LTSMVMFGGVGINPQIERLKKPLDILVATPGRLLDHAAQKTIDLSAIEILVLDE 167
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI++++ P RQ +LFSAT + +A+ + +P ++V
Sbjct: 168 ADRMLDMGFIRDIKRVLALLPKKRQNLLFSATFSDEIKELADGLLHNPGFVEVARRNTAS 227
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q++ V HK L+ +L+R Q ++FT TK A+ +A++L+ G AA +H
Sbjct: 228 ELVEQAVHLVSQG-HKRDLVAHLIRHHDWKQVLIFTRTKHGANRLAEKLSKDGIAAAAIH 286
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR + L + G + +LVATD+AARG+D+ + V N++LP PEDYVHRIGRT
Sbjct: 287 GNKSQSARTKALAEFKNGTLPVLVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRT 346
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIP-IEVINGFEPKKR 405
GRAG +G AVSLV+ E +K IER K++IP +++ F P +
Sbjct: 347 GRAGCSGAAVSLVDGEEIKLLKGIERLIKREIPRLDIPGAFVPSDK 392
>gi|423119382|ref|ZP_17107066.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5246]
gi|376398561|gb|EHT11185.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5246]
Length = 466
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 172/412 (41%), Positives = 245/412 (59%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAVAEQGYLEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 H----KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
K +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLIQKEPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + ++ ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRSGVDVLVATPGRLLDLEHQNAVSLDKVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL ++ + Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSQMIGEGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E + IER K++IP I+G+EP IR
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLHDIERLLKKEIPRIAIDGYEPDPSIRA 384
>gi|83647393|ref|YP_435828.1| superfamily II DNA/RNA helicase [Hahella chejuensis KCTC 2396]
gi|83635436|gb|ABC31403.1| Superfamily II DNA and RNA helicase [Hahella chejuensis KCTC 2396]
Length = 453
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 170/406 (41%), Positives = 242/406 (59%), Gaps = 26/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L A+ + GY P+ +Q QAIP + G+D++ ++QTG+GKTAAF LP L
Sbjct: 1 MSFASLGLSAPILDAISEQGYASPSPIQLQAIPVVLEGKDVMAAAQTGTGKTAAFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + R + Q R L+LTPTRELA QV Y
Sbjct: 61 ERLSKGD------------------------RARSNQARALILTPTRELAAQVGECVSIY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
+ +++ + GG+ QM L R ++++ATPGRL+D N + F L++LVLDE
Sbjct: 97 SSKLP-LRSTVVFGGVKINPQMMRLRRGVDVIVATPGRLLDLYNQNAVRFQDLEVLVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI KI+D P RQ ++FSAT + +A+ + +P+ + V+
Sbjct: 156 ADRMLDMGFIHDIRKILDILPKRRQNLMFSATFSNDIRKLAKELVNNPVEISVSPPNTTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
K + Q I VD K+ LL L+RD QA+VF+ TK A+ + +L G AA +H
Sbjct: 216 KTVKQWIHPVDK-KQKSALLTQLIRDNNWDQALVFSRTKHGANRLTRQLCAKGINAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD QNAR + L + + G ++ILVATD+AARGID+ + V N+DLP+ EDYVHRIGRT
Sbjct: 275 GDKSQNARTKALADFKTGSVQILVATDIAARGIDIDQLPQVVNFDLPQVAEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
GRAG G AVSLV+ E + IER ++++P E I GFEP++R+
Sbjct: 335 GRAGAEGQAVSLVSADEFKLLADIERLIQKRLPREEIEGFEPEQRL 380
>gi|167644899|ref|YP_001682562.1| DEAD/DEAH box helicase [Caulobacter sp. K31]
gi|167347329|gb|ABZ70064.1| DEAD/DEAH box helicase domain protein [Caulobacter sp. K31]
Length = 479
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 171/392 (43%), Positives = 234/392 (59%), Gaps = 25/392 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F +GL + +LKAL GYT PT +Q QAIP +SGRDL+ +QTG+GKTAAF LP LH
Sbjct: 3 QFTDLGLAKPLLKALTDKGYTVPTPIQAQAIPLVMSGRDLLGIAQTGTGKTAAFALPILH 62
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ A K P R F R LVL+PTRELA Q+ + YG
Sbjct: 63 RLAEDKKPAP------------------RRGF-----RCLVLSPTRELATQIAESFRDYG 99
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+M + +I GG+ Y QM+ L+ ++++ATPGRL+DH+ + + ++I VLDEA
Sbjct: 100 KHMG-LTVATIFGGVKYGPQMKALAAGVDVVVATPGRLMDHLGEKSAHLNGVEIFVLDEA 158
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
D+MLD+GF+ I KI P RQ + FSAT+ +G +A + K+P + + +
Sbjct: 159 DQMLDLGFVVPIRKIASQLPKERQNLFFSATMPSEIGKLAGELLKNPAQVAITPSATTVE 218
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
I QS++F++ K LL LL DK V +++VFT TKR AD +A L SG AA +HG
Sbjct: 219 RIDQSLIFIE-AQRKRPLLAELLADKSVERSIVFTRTKRGADRVAKYLVASGIEAAAIHG 277
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
D Q R R L + G++K L+ATD+AARGIDV ++HVFNY+LP PE YVHRIGRT
Sbjct: 278 DKTQGQRERALAAFKAGQVKALIATDIAARGIDVNDVSHVFNYELPNVPESYVHRIGRTA 337
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIP 393
R G+ G A+S ER +K I++ T+Q IP
Sbjct: 338 RKGKEGIAISFCADDERNLLKDIQKATRQTIP 369
>gi|117621566|ref|YP_856876.1| ATP-dependent RNA helicase RhlE [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117562973|gb|ABK39921.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
Length = 466
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 172/401 (42%), Positives = 239/401 (59%), Gaps = 25/401 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +L+A+ + GY P+ +Q+QAIPA ++GRDL+ ++QTG+GKTA F LP L
Sbjct: 1 MSFTSLGLAEPLLRAVAEQGYDTPSPIQQQAIPAVLAGRDLMAAAQTGTGKTAGFTLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ SK K+ P + R LVLTPTRELA QV + Y
Sbjct: 61 QRLTESKRKV-----------------------SPNRIRALVLTPTRELAAQVGESVRNY 97
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ I++ + GG+ QM R ++L+A PGRL+D N + F ++ILVLDE
Sbjct: 98 GKHLP-IRSHVVFGGVSINPQMMATRRGLDVLVACPGRLMDLYNQNAVKFDEVEILVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI +I+ P RQ +LFSAT + +A + +P +++V
Sbjct: 157 ADRMLDMGFIRDIRRILALLPKKRQNLLFSATFADEIRELATGLLDNPAVIEVAPRNSTA 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q ++ D +K LL +L+ Q +VFT TK A+ +A+ L+ +G AA +H
Sbjct: 217 ERIEQ-LVHPCDKANKIALLSHLVTSNNWQQVLVFTRTKHMANRVAETLDKNGVSAAAIH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + G +K+LVATD+AARG+D+ + V N++LP EDYVHRIGRT
Sbjct: 276 GNKSQGARTRALAGFKDGSVKVLVATDIAARGLDIDKLPQVVNFELPNVAEDYVHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
GRAG G A+SLV E IK IER TKQ IP E + GFE
Sbjct: 336 GRAGAAGHAISLVAADEGKLIKAIERLTKQNIPCEQVAGFE 376
>gi|262193653|ref|YP_003264862.1| DEAD/DEAH box helicase [Haliangium ochraceum DSM 14365]
gi|262077000|gb|ACY12969.1| DEAD/DEAH box helicase domain protein [Haliangium ochraceum DSM
14365]
Length = 497
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 172/395 (43%), Positives = 242/395 (61%), Gaps = 21/395 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+ +GL E +++A+ GYT T +Q QAIP A+ GRDL+ +QTG+GKTAAF LP L
Sbjct: 1 MPFQQLGLSEPLVRAVHDAGYTNATPIQTQAIPPALDGRDLLGCAQTGTGKTAAFSLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ A + + + R +P R L++TPTRELA Q+ + Y
Sbjct: 61 QRLAETGDG----------------NARPRRGARPI--RALIVTPTRELAAQIGDSMTTY 102
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ ++ I GG+ RQ+ L R +IL+ATPGRL+D M+ G I+ L++ VLDE
Sbjct: 103 GRHLP-LRNTVIFGGVNQNRQVDALRRGIDILVATPGRLLDLMDQGYIHLDRLEVFVLDE 161
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI KIV A P RQT+LFSAT+ G + ++A + ++P+ + V
Sbjct: 162 ADRMLDMGFIHDIRKIVAAVPSERQTLLFSATMPGEIQSLAAGLLQEPVKVSVTPESTAA 221
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDK-RVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+ + Q + V K LL LLRD + + +VF+ TK AD +A RL+ S A +
Sbjct: 222 ETVEQCVYLVSR-EDKQSLLTELLRDDPEMAKVLVFSRTKHGADRVAKRLSKSNIPAQAI 280
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HG+ QNAR R LE+ +RG ++LVA+D+AARG+D+ A++HV N+DLP PE YVHRIGR
Sbjct: 281 HGNKSQNARLRALESFKRGDTRVLVASDIAARGLDIDALSHVVNFDLPNEPETYVHRIGR 340
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
TGRAG G A+S ER ++ IER Q IP+
Sbjct: 341 TGRAGCEGVAMSFCADEERGYLRSIERLIDQLIPV 375
>gi|117924939|ref|YP_865556.1| DEAD/DEAH box helicase [Magnetococcus marinus MC-1]
gi|117608695|gb|ABK44150.1| DEAD/DEAH box helicase domain protein [Magnetococcus marinus MC-1]
Length = 439
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 168/399 (42%), Positives = 243/399 (60%), Gaps = 25/399 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F S+ L + +L AL + GYT PT +Q QAIP ++GRDL+ +QTG+GKTAAF LP L+
Sbjct: 3 DFASLNLVKPLLNALTQAGYTTPTPIQAQAIPHLLAGRDLLGIAQTGTGKTAAFALPILN 62
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
K + K R P PR L+LTPTRELA Q+ + YG
Sbjct: 63 KLSQIKG-----------------------RPAPNAPRALILTPTRELASQIGNSIAVYG 99
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
++ + + GG+ Q++ LSR +IL+ATPGRL+D M + +Q+ VLDEA
Sbjct: 100 KHVPTTHTV-VFGGVGKQPQIRALSRGVDILVATPGRLLDLMGERHVRLDQIQVFVLDEA 158
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGFI+DI +I+ P R T+LFSAT+ + +AE + +P ++V +
Sbjct: 159 DRMLDMGFIHDIRRIIKVIPAKRHTLLFSATMPKDIAELAEGLLTNPAKVEVTPESTTVE 218
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
ITQ +LFVD +K LL +L + + Q +VFT TK A+ +A+ L+ +A +HG
Sbjct: 219 RITQKVLFVDK-QNKRSLLKNVLEHESIEQVLVFTRTKHGANRVAEYLDKHRIASAAIHG 277
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ Q+AR + L+ R+G++K+LVATD+AARGIDV I+HV N+DLP E YVHRIGRT
Sbjct: 278 NKSQSAREKALDGFRKGKLKVLVATDIAARGIDVAGISHVINFDLPNESESYVHRIGRTA 337
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGF 400
RAGR+G A+S + ER + IE+ +Q +P+++ + F
Sbjct: 338 RAGRDGNAISFCDAEERGYLLDIEKTIRQTVPVDIDHEF 376
>gi|170768930|ref|ZP_02903383.1| putative ATP-dependent RNA helicase RhlE [Escherichia albertii
TW07627]
gi|170122002|gb|EDS90933.1| putative ATP-dependent RNA helicase RhlE [Escherichia albertii
TW07627]
Length = 447
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 170/412 (41%), Positives = 243/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + N+AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKNLAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL Y++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSYMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP + G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAVPGYEPDPSIKA 384
>gi|259909026|ref|YP_002649382.1| ATP-dependent RNA helicase RhlE [Erwinia pyrifoliae Ep1/96]
gi|387871953|ref|YP_005803329.1| ATP-dependent RNA helicase rhlE [Erwinia pyrifoliae DSM 12163]
gi|224964648|emb|CAX56162.1| Putative ATP-dependent RNA helicase [Erwinia pyrifoliae Ep1/96]
gi|283479042|emb|CAY74958.1| putative ATP-dependent RNA helicase rhlE [Erwinia pyrifoliae DSM
12163]
Length = 471
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 173/408 (42%), Positives = 247/408 (60%), Gaps = 24/408 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q QAIP ++GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNADILRAVAEQGYNEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ SS N P ++ + R L+LTPTRELA QV + Y
Sbjct: 61 -QLLSSHNPHPKGRRPV---------------------RALILTPTRELAAQVGENVQDY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+ ++++ + GG+ QM L ++L+ATPGRL+D + ++ S ++ILVLDE
Sbjct: 99 SKYLD-MRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNALDLSKVEILVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +P ++V
Sbjct: 158 ADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDEIKTLAEKLLHNPEQVEVARRNTAS 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ +TQ + VD K LL L+ Q +VFT TK A+ +A++LN G AA +H
Sbjct: 218 EQVTQHVHLVDK-KRKRELLSLLIGRGNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G+I++LVATD+AARGID+ + HV NY+LP PEDYVHRIGRT
Sbjct: 277 GNKSQGARTRALSDFKDGKIRVLVATDIAARGIDIEELPHVVNYELPNVPEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
GRA G A+SLV E ++ IER K++IP I+GFEP I+
Sbjct: 337 GRAAAVGEALSLVCVDEHKLLRDIERVLKREIPRMAIDGFEPDPSIKA 384
>gi|345863070|ref|ZP_08815283.1| ATP-dependent RNA helicase RhlE [endosymbiont of Tevnia jerichonana
(vent Tica)]
gi|345125953|gb|EGW55820.1| ATP-dependent RNA helicase RhlE [endosymbiont of Tevnia jerichonana
(vent Tica)]
Length = 456
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 170/402 (42%), Positives = 238/402 (59%), Gaps = 26/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S+GL +L+A+ + GY P+ +Q QAIPA I GRD++ ++QTG+GKTA F LP L
Sbjct: 1 MGFASLGLSAPLLEAVAEQGYKTPSPIQAQAIPAVIKGRDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + R + Q R L+LTPTRELA+QV + Y
Sbjct: 61 ERLSKDG------------------------RAQANQVRSLILTPTRELAVQVGESVATY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +++ + GG+ QM L R ++L+ATPGRL+D N + F L++LVLDE
Sbjct: 97 GKHLP-LRSTVVYGGVKINPQMMKLRRGVDVLVATPGRLLDLYNRNAVKFKQLEVLVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI KI+ P RQ ++FSAT + ++A+ + K P+ + VN
Sbjct: 156 ADRMLDMGFIHDIRKILSVLPKQRQNLMFSATFSDEIRHLAKGLVKQPVEISVNPRNTTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
K + Q I VD K LL L+RD R Q +VFT TK+ AD + L G A +H
Sbjct: 216 KTVKQWICPVDK-KQKPALLTQLIRDNRWRQVLVFTRTKQGADRLTRHLKGKGIEAEAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + L + + G ++ILVATD+AARG+D+ + V N+DLP EDY+HRIGRT
Sbjct: 275 GNKSQGARTKALADFKEGSVRILVATDIAARGLDIDQLPQVVNFDLPHVAEDYIHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G A+SLV+ E + IER KQ + ++I+GFEP
Sbjct: 335 GRAGARGQAISLVSADEFKQLSDIERLIKQLLTRKLIDGFEP 376
>gi|404251857|ref|ZP_10955825.1| ATP-dependent RNA helicase [Sphingomonas sp. PAMC 26621]
Length = 431
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 166/384 (43%), Positives = 230/384 (59%), Gaps = 25/384 (6%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F + L L+LKAL + GY PT +Q Q+IP + GRD++ +QTG+GKTAAF LP LH+
Sbjct: 9 FPDLALSPLILKALAEEGYATPTPIQAQSIPLLLEGRDMLGMAQTGTGKTAAFALPLLHR 68
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A+ N P K R+LVL PTREL Q+ A E +G
Sbjct: 69 LAA--NPRPAPKGGA---------------------RILVLAPTRELVSQIAAGFESFGR 105
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
++ +K +I GG+ Q+ L +IL+A PGRL+D ++ G + S L+ LVLDEAD
Sbjct: 106 HLS-LKVTTIFGGVSQFHQVAALDAGVDILVAAPGRLLDLVDQGLCDLSALEALVLDEAD 164
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
+MLDMGF IE++V P R T+LFSAT+ + +AE++ DP +++
Sbjct: 165 QMLDMGFAKPIERLVATLPKDRHTLLFSATMPKAIAALAESLLTDPASVEIAPPSTTVDR 224
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
I QS++F+D K LL+ LLR +GQAVVFT K A+ + + +G A LHG+
Sbjct: 225 IAQSVMFLDAANKKTALLE-LLRTPEIGQAVVFTLQKNIANEVCAFITEAGITAEALHGN 283
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
Q R R L+ R G +++LVATD+AARGIDV +THVFN+DLP PE YVHRIGRTGR
Sbjct: 284 KSQGQRERALDAFRAGTVQVLVATDIAARGIDVDTVTHVFNHDLPSLPESYVHRIGRTGR 343
Query: 363 AGRNGFAVSLVNHAERMNIKKIER 386
AGR+GFA++L + +R + +ER
Sbjct: 344 AGRSGFAITLCDAEQRAWLHDVER 367
>gi|157376983|ref|YP_001475583.1| DEAD/DEAH box helicase [Shewanella sediminis HAW-EB3]
gi|157319357|gb|ABV38455.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
HAW-EB3]
Length = 513
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 174/426 (40%), Positives = 250/426 (58%), Gaps = 26/426 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +LKA+ + GY P+ +Q QAIPA + G+D++ ++QTG+GKTA F LP L
Sbjct: 23 MSFTSLGLSAPILKAVAQKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL 82
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
++ T R + K Q R LVLTPTRELA QV + E Y
Sbjct: 83 ----------------------ELLTRGNRAQAK--QVRALVLTPTRELAAQVAESVETY 118
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G + +++ + GG+ Q+ L + +IL+ATPGRL+D N +NF+ L++L+LDE
Sbjct: 119 GKNLP-LRSAVVFGGVGIGPQISKLGKGVDILVATPGRLLDLFNQRALNFNQLEVLILDE 177
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI+KI+ P RQ ++FSAT + +A+ + +P+ + V
Sbjct: 178 ADRMLDMGFIHDIKKILKVLPAKRQNLMFSATFSDDIRKLAKGLVNNPVEISVTPRNATA 237
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
K + Q I VD K L +L++ Q +VF+ TK A+ IA L + AA +H
Sbjct: 238 KTVEQYIYQVDQ-KQKTAALIHLIKQNDWKQVLVFSRTKHGANRIAKNLEANDLTAAAIH 296
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + L N + G +++LVATD+AARGID+ + +V N+DLP PEDYVHRIGRT
Sbjct: 297 GNKSQGARTKALANFKSGEVRVLVATDIAARGIDIDQLPNVVNFDLPNVPEDYVHRIGRT 356
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRYRFNNNNW 420
GRAG +G AVSLV+ E ++ IER KQ+IP + + GF P + + R + N
Sbjct: 357 GRAGADGQAVSLVSGDESKLLRDIERLIKQKIPRKEVEGFVPTQVVAETDLNERKHGQNR 416
Query: 421 KTHNIN 426
N N
Sbjct: 417 GPRNAN 422
>gi|167036018|ref|YP_001671249.1| DEAD/DEAH box helicase [Pseudomonas putida GB-1]
gi|166862506|gb|ABZ00914.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1]
Length = 626
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 169/403 (41%), Positives = 251/403 (62%), Gaps = 24/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ P + +Q R P QPR+LVLTPTRELA QV + +
Sbjct: 61 ERL------FPAGHPDKSQ------------RHGPRQPRVLVLTPTRELAAQVH---DSF 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+Y + + +S I GG+ Q+Q +++ ++L+A PGRL+D GK++ +H++ILVL
Sbjct: 100 KVYARDLPLVSACIFGGVGMNPQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI+D++K++ P RQ +LFSAT + ++A+ + +P ++V
Sbjct: 160 DEADRMLDMGFIHDVKKVLARLPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + + HK LL +L+ Q +VFT TK A+ +A+ L G AA
Sbjct: 220 TVERIEQRVYRLP-ASHKRALLAHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + +++LVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKANSVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR+G A+S+V E +K IER TKQ+I + GF+
Sbjct: 339 RTGRAGRSGEAISMVAPDEEKLLKSIERVTKQRIQDGDLMGFD 381
>gi|95928808|ref|ZP_01311554.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
gi|95135153|gb|EAT16806.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
Length = 426
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 166/402 (41%), Positives = 244/402 (60%), Gaps = 31/402 (7%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F +GL +L+A+ GY++PT +Q QAIPA ++G D++ ++QTG+GKTA F LP L +
Sbjct: 4 FNDLGLSAELLRAVADQGYSEPTPIQAQAIPAVLNGGDILAAAQTGTGKTAGFTLPVLQR 63
Query: 63 FAS---SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATER 119
+ S + PV R LVLTPTRELA QV A+
Sbjct: 64 LSDTPVSSGRRPV--------------------------RALVLTPTRELAAQVGASVAD 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
YG Y+ AI + GG+ Q+ +L + +IL+ATPGRL+DH++ ++ S ++IL+LD
Sbjct: 98 YGKYLPLRSAI-VFGGVKINPQISMLRKGVDILVATPGRLLDHVSQKTVDLSKVEILILD 156
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI DI K++ P RQ +LFSAT + +A+++ P +++V
Sbjct: 157 EADRMLDMGFIRDIRKVLALLPKKRQNLLFSATFSDDIKRLADSLLNTPTLIEVARRNTA 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+ + QS+ ++ K LL +++ + Q +VFT TKR A+ +A +L G + +
Sbjct: 217 SEQVEQSVHLIEKS-RKRELLSHMIGSQNWQQVLVFTRTKRGANRLAQQLEKDGLKSTAI 275
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HG+ Q AR + L + + GR ++LVATD+AARG+D+ + +V NY+LP PEDYVHRIGR
Sbjct: 276 HGNKTQGARTKALADFKAGRARVLVATDIAARGLDIDQLPNVVNYELPDVPEDYVHRIGR 335
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
TGRAGR+G AVSLV E+ ++ IER K+ I EVI G+E
Sbjct: 336 TGRAGRDGKAVSLVCSEEKKQLRDIERLLKRPIAKEVIAGYE 377
>gi|298490698|ref|YP_003720875.1| DEAD/DEAH box helicase ['Nostoc azollae' 0708]
gi|298232616|gb|ADI63752.1| DEAD/DEAH box helicase domain protein ['Nostoc azollae' 0708]
Length = 492
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 172/400 (43%), Positives = 244/400 (61%), Gaps = 21/400 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F ++ L +++A+ + GYTKPT +Q QAIPA +SG DL+ +QTG+GKTA+F LP L
Sbjct: 1 MSFSNLALSPEIIRAVTERGYTKPTPIQMQAIPAVLSGGDLLAGAQTGTGKTASFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ +S+KN +K N + P R L+LTPTRELA QV + Y
Sbjct: 61 HQLSSNKN----VKSNSTG-------------WVPI--RALILTPTRELAAQVEESVHDY 101
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+K +K++++ GG+ Q +LL +I+++TPGRL+DH+ G +N S +++LVLDE
Sbjct: 102 GKYLK-LKSMAMFGGVSINPQKRLLKSGVDIVVSTPGRLLDHVEQGTVNLSRIEVLVLDE 160
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI +I+ P RQ +LF AT + +A + P +++V
Sbjct: 161 ADRMLDMGFIRDIRRIMSILPKKRQNLLFFATFSDKIKELAAGLLNRPTMIEVARRNVTA 220
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
I Q VD K +LL +L++ Q +VFT TK AD + +LN A +H
Sbjct: 221 DTIAQRAYQVDRD-KKPQLLAHLIKQDDWYQVLVFTRTKYGADRLVKQLNDDRIQALAIH 279
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR L + G +++LVATD+AARG+D+ + HV NYDLP PEDYVHRIGRT
Sbjct: 280 GNKSQGARTHALAKFKNGSLQVLVATDIAARGLDISELPHVVNYDLPYVPEDYVHRIGRT 339
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGF 400
GRAG G A+SLV E + IE+ +Q++P+EVI GF
Sbjct: 340 GRAGARGEAISLVCVDEYHLLADIEKLIQQKLPLEVITGF 379
>gi|209885134|ref|YP_002288991.1| ATP-dependent RNA helicase RhlE [Oligotropha carboxidovorans OM5]
gi|337741239|ref|YP_004632967.1| DEAD-box ATP-dependent RNA helicase CshA [Oligotropha
carboxidovorans OM5]
gi|386030255|ref|YP_005951030.1| DEAD/DEAH box helicase [Oligotropha carboxidovorans OM4]
gi|209873330|gb|ACI93126.1| putative ATP-dependent RNA helicase RhlE [Oligotropha
carboxidovorans OM5]
gi|336095323|gb|AEI03149.1| DEAD-box ATP-dependent RNA helicase CshA [Oligotropha
carboxidovorans OM4]
gi|336098903|gb|AEI06726.1| DEAD-box ATP-dependent RNA helicase CshA [Oligotropha
carboxidovorans OM5]
Length = 469
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 171/395 (43%), Positives = 239/395 (60%), Gaps = 28/395 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL E VL A+ GYT PT +QEQAIP ++ RD++ +QTG+GKTAAF+LP L
Sbjct: 1 MSFSHLGLSEKVLAAVAATGYTTPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
T E+ R + PR L+L PTRELA QV + Y
Sbjct: 61 -------------------------TMLEKGRARARMPRTLILEPTRELAAQVQENIDHY 95
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
+K+ ++GGM + Q L R +IL+ATPGRL+DH GK+ + +++LV+DE
Sbjct: 96 -CAGQKLNIALLIGGMSFGDQDAKLMRGVDILIATPGRLLDHTERGKLLLTGVEMLVIDE 154
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DIE+I P TRQT+ F+AT+ + + E +P ++++
Sbjct: 155 ADRMLDMGFIPDIERICKLVPFTRQTLFFTATMPPEIRRITETFLHNPEKVEISRPASTA 214
Query: 241 KNITQSILFVDDILHKNR-LLDYLLRD-KRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+TQS + + H R LL LLRD K + A++F KRD I+ L GF AA
Sbjct: 215 TTVTQSQIGIGSDAHAKRELLRQLLRDAKDLKNAIIFCNRKRDVAILHKSLQKHGFGAAA 274
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
LHGD+ Q+AR L+ R+G + +LVA+DVAARG+D+P ++HVFN+D+P P+DYVHRIG
Sbjct: 275 LHGDMDQSARMTALDQFRKGELPLLVASDVAARGLDIPEVSHVFNFDVPYHPDDYVHRIG 334
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIP 393
RTGRAGR G A+S+V+ ++ +I IE+ Q IP
Sbjct: 335 RTGRAGRLGTAISIVSPTDQKSILAIEKLIGQSIP 369
>gi|407939705|ref|YP_006855346.1| DEAD/DEAH box helicase [Acidovorax sp. KKS102]
gi|407897499|gb|AFU46708.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
KKS102]
Length = 594
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 177/403 (43%), Positives = 243/403 (60%), Gaps = 22/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F + L +LKA+ + GY PT +Q QAIPA + G DL+ +QTG+GKTAAF LP L
Sbjct: 1 MTFDELNLAPAILKAVHETGYETPTPIQAQAIPAVLEGHDLLAGAQTGTGKTAAFTLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ S+ P KN +F R LVLTPTRELA QV + Y
Sbjct: 61 HRL--SQGTAP---KN---------------KFGGKGIRALVLTPTRELAAQVEESVREY 100
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ I + + GG+ Q+ + R +IL+ATPGRL+D G ++ S +++LVLDE
Sbjct: 101 GKYLD-INSTVVFGGVGMNPQIDRIKRGVDILVATPGRLLDLQQQGFLDLSTVEVLVLDE 159
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+D++K++ P +Q++LFSAT + +A + K+P ++V
Sbjct: 160 ADRMLDMGFIHDVKKVLALVPNDKQSLLFSATFSDEIRELANTLLKNPQSIQVTPRNTTV 219
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I+Q I V K LL ++++ Q +VFT TK A+ +A+ L +G A LH
Sbjct: 220 QRISQVIHPVGRGKKKQVLL-HIIQQHNWSQVLVFTRTKFGANNVAEFLTKNGVQAMALH 278
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR + L + G I+ LVATD+AARGID+ + HV NY++P PEDYVHRIGRT
Sbjct: 279 GNKSQSARTQALAGFKSGEIRALVATDIAARGIDIDDLPHVVNYEIPNVPEDYVHRIGRT 338
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPK 403
GRAG G AVSLV E + IERFTKQQIP++VI GF P+
Sbjct: 339 GRAGATGEAVSLVCMDEEGFMMDIERFTKQQIPVQVIEGFGPE 381
>gi|319794896|ref|YP_004156536.1| dead/deah box helicase domain-containing protein [Variovorax
paradoxus EPS]
gi|315597359|gb|ADU38425.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus EPS]
Length = 605
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 174/403 (43%), Positives = 246/403 (61%), Gaps = 22/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
MNF + L +LKA+ + GY PT +Q QAIPA + G DL+ +QTG+GKTAAF LP L
Sbjct: 1 MNFDELKLAPAILKAVHEHGYDTPTPIQAQAIPAVLEGHDLLGGAQTGTGKTAAFTLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
HK S++ NK F R LVLTPTRELA QV + Y
Sbjct: 61 HKLTMSRSA-----------TNK---------FGGVGIRALVLTPTRELAAQVEESVRTY 100
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y++ + + I GG+ Q+ L + +IL+ATPGRL+D G ++ S +Q+L+LDE
Sbjct: 101 GKYLQ-LDSTVIFGGVGMNPQISKLKKGVDILVATPGRLLDLQQQGMLDLSQVQMLILDE 159
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+D++KI+ P +Q++LFSAT + ++A + K+P ++V
Sbjct: 160 ADRMLDMGFIHDVKKILALVPKEKQSLLFSATFSDEIRDLAATLLKNPQSIQVTPRNTTV 219
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ ITQ I V K LL +++ + + Q +VFT TK A+ +A+ L +G A LH
Sbjct: 220 QRITQVIHPVGR-GKKKALLAHIINENKWSQVLVFTRTKFGANSVAEFLTKNGIEAMALH 278
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR + L + G I+ LVATD+AARGID+ + HV NY++P EDYVHRIGRT
Sbjct: 279 GNKSQSARTQALAGFKSGDIRALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRT 338
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPK 403
GRAG +G AVS V E +++IERFTKQ IP++++ G+ P+
Sbjct: 339 GRAGSSGEAVSFVCLDEEGFMQEIERFTKQTIPVQIVEGYGPE 381
>gi|443312790|ref|ZP_21042405.1| DNA/RNA helicase, superfamily II [Synechocystis sp. PCC 7509]
gi|442777246|gb|ELR87524.1| DNA/RNA helicase, superfamily II [Synechocystis sp. PCC 7509]
Length = 432
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 167/403 (41%), Positives = 242/403 (60%), Gaps = 26/403 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F +GL + +LKA+ + GYT+PT +Q+QAIPA + G+D+ S+QTG+GKTA F LP L
Sbjct: 1 MTFSHLGLSQELLKAISEQGYTQPTPIQKQAIPAILQGKDVFASAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
NN +R PR L+L PTRELA QV + Y
Sbjct: 61 QLL-----------------NNTSANKGDR------APRALILLPTRELAQQVGDSVRTY 97
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ +++ I GG+ Q Q L + +I++ATPGRL+DH+ +N S ++ILVLDE
Sbjct: 98 GKYLS-LRSAVIYGGVAIRPQTQTLRQGVDIVVATPGRLLDHLEQKNLNLSQIEILVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVT-RQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
DRMLDMGFI+DI KI+ P + RQT++FSAT + +A + P +++V +
Sbjct: 157 CDRMLDMGFIHDIRKILAKLPSSSRQTLMFSATFSTTIRQLANTLLSSPTLIEVAARNTA 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+ + Q + VD K LL Y + Q +VFT TK A +A++L G A +
Sbjct: 217 SEQVEQVVHLVDRD-RKRELLSYTISFHNWKQVLVFTRTKHGASRLAEQLAKDGLQTAAI 275
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HG+ Q+AR + L + ++G++++LVATDVA+RG+D+ + +V NY+LP PEDYVHRIGR
Sbjct: 276 HGNKSQSARMKALNDFKQGKVRVLVATDVASRGLDIERLPYVVNYELPNVPEDYVHRIGR 335
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
TGRAG+ G AVSLV E ++ IE+ Q + EV++G+EP
Sbjct: 336 TGRAGKEGRAVSLVCKEEYEYLESIEKLLNQTLVKEVVSGYEP 378
>gi|325108112|ref|YP_004269180.1| DEAD/DEAH box helicase [Planctomyces brasiliensis DSM 5305]
gi|324968380|gb|ADY59158.1| DEAD/DEAH box helicase domain protein [Planctomyces brasiliensis
DSM 5305]
Length = 475
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 166/394 (42%), Positives = 249/394 (63%), Gaps = 25/394 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F + L + +A+ YT PT +Q Q IP ++GRD++ S+QTG+GKTAAF LP L
Sbjct: 3 SFSDLNLIAPIQRAIKAQNYTTPTPIQAQTIPEILNGRDILGSAQTGTGKTAAFALPILD 62
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ +N+ P+ P +P +LVL PTRELA+QV + YG
Sbjct: 63 -YLGRQNRRPI----------------------PNEPTVLVLVPTRELAIQVGDSFATYG 99
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+++ A+ I GG+ RQ++ L+R IL+ATPGRL+D MN G I+ S L++ +DEA
Sbjct: 100 RHLRVRHAL-IYGGVNQFRQVRDLNRGVHILVATPGRLLDLMNQGHIDLSRLELFAVDEA 158
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRM+DMGF+ D++KI+ P RQ++ FSATL + ++ + DP+ + ++ + +
Sbjct: 159 DRMMDMGFLPDLKKIIREIPQERQSLFFSATLPPKINELSRELLTDPVSVTIDPEVRSVE 218
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
I QS+++VD K+ LLD +L ++ +GQ VVFT TK A+ + ++L SG A +HG
Sbjct: 219 AIEQSLIYVDQQSKKDLLLD-ILNEEGIGQTVVFTKTKFCANRLEEQLRKSGVSAIAIHG 277
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ QNAR + L R ++K+LVATDVAARGIDV +THV N++LP PE YVHRIGRTG
Sbjct: 278 NKSQNARQKALLAFRNEKVKVLVATDVAARGIDVDGVTHVINFELPHEPESYVHRIGRTG 337
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIE 395
RAG +G A+S ++AER ++ IER +Q++P++
Sbjct: 338 RAGASGIAISFCSNAERAELRAIERQIEQKVPVD 371
>gi|423107485|ref|ZP_17095180.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5243]
gi|376388510|gb|EHT01205.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5243]
Length = 454
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 170/412 (41%), Positives = 246/412 (59%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPEILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 ----HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
HK +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLIHKEPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ ++++ + GG+ QM L +IL+ATPGRL+D + ++ +++L
Sbjct: 95 VRDYSKYLN-VRSLVVFGGVSINPQMMKLRSGVDILVATPGRLLDLEHQNAVSLDKVEVL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + ++AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKSLAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ ++Q + FVD K LL ++ + Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVSQLVHFVDK-KRKRELLSQMIGEGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E + IER K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLHDIERLLKKEIPRIAIAGYEPDPSIKA 384
>gi|212555159|gb|ACJ27613.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
Length = 482
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 182/450 (40%), Positives = 256/450 (56%), Gaps = 27/450 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +LKA+ GY P+ +Q QAIPA + G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MSFASLGLSAQILKAVANKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ S NK P Q R LVLTPTRELA QV + E Y
Sbjct: 61 -ELLSKGNKAPAK-----------------------QVRALVLTPTRELAAQVGESVEIY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G + +K+ I GG+ Q+ LSR +IL+ATPGRL+D N +NFS L++LVLDE
Sbjct: 97 GKNLP-LKSAVIFGGVGIGPQISKLSRGVDILVATPGRLLDLYNQRAVNFSQLEVLVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI+KI+ P RQ ++FSAT + +A+ + +P+ + V
Sbjct: 156 ADRMLDMGFIHDIKKILAILPAKRQNLMFSATFSDDIRKLAKGLVNNPVEISVTPRNATA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ Q I VD K +L L++ Q +VF+ TK A+ +A L+ G AA +H
Sbjct: 216 NTVKQWICPVDKG-QKASVLVKLIKQHDWQQVLVFSRTKHGANRLAKNLDAKGITAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + L + G +++LVATD+AARG+D+ + V N+DLP PEDYVHRIGRT
Sbjct: 275 GNKSQGARTKALAEFKSGDVRVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI-RTYYSRYRFNNNN 419
GRAG G AVSLV+ E ++ IE KQ + VI GFEP ++ T +R N
Sbjct: 335 GRAGATGQAVSLVSDEEIKLLRDIELLIKQNLERRVIEGFEPSHKLPETDLTRKSHGQNK 394
Query: 420 WKTHNINKSNITKRFYRQIKKTSISASSKN 449
++ ++ + KR K + + S+N
Sbjct: 395 GPRNSNSRGSNQKRSNSGGKPANRQSQSRN 424
>gi|390433214|ref|ZP_10221752.1| ATP-dependent RNA helicase RhlE [Pantoea agglomerans IG1]
Length = 456
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 170/408 (41%), Positives = 244/408 (59%), Gaps = 24/408 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY++PT +Q QAIP ++GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSADILRAVAEQGYSEPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
K +++ I R R +P R L+LTPTRELA QV Y
Sbjct: 61 QKLSATATPI-------------------RGR-RPV--RALILTPTRELAAQVGENVSDY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+ ++++ + GG+ QM L +IL+ATPGRL+D ++ S ++ILVLDE
Sbjct: 99 SKYLS-LRSMVVFGGVSINPQMVKLRGGVDILVATPGRLLDLAQQNAVDLSQVEILVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +P +++V
Sbjct: 158 ADRMLDMGFIHDIRRVLARLPAKRQNLLFSATFSDEIKGLAEKLLTNPEMIEVARRNTAS 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q + FVD K LL L+ + Q +VFT TK A+ +A++L G AA +H
Sbjct: 218 EQVAQQVAFVDK-KRKRELLSQLIGEGNWQQVLVFTRTKHGANHLAEQLGKDGISAAAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP EDYVHRIGRT
Sbjct: 277 GNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEELPHVVNYELPNVAEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
GRA G A+SLV E ++ IER K++IP + G+EP I+
Sbjct: 337 GRAAATGVALSLVCVDEHKLLRDIERLLKREIPRLAVEGYEPDPSIKA 384
>gi|372277732|ref|ZP_09513768.1| ATP-dependent RNA helicase RhlE [Pantoea sp. SL1_M5]
Length = 457
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 170/408 (41%), Positives = 244/408 (59%), Gaps = 24/408 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY++PT +Q QAIP ++GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSADILRAVAEQGYSEPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
K +++ I R R +P R L+LTPTRELA QV Y
Sbjct: 61 QKLSATATPI-------------------RGR-RPV--RALILTPTRELAAQVGENVSDY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+ ++++ + GG+ QM L +IL+ATPGRL+D ++ S ++ILVLDE
Sbjct: 99 SKYLS-LRSMVVFGGVSINPQMVKLRGGVDILVATPGRLLDLAQQNAVDLSQVEILVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +P +++V
Sbjct: 158 ADRMLDMGFIHDIRRVLARLPAKRQNLLFSATFSDEIKGLAEKLLTNPEMIEVARRNTAS 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q + FVD K LL L+ + Q +VFT TK A+ +A++L G AA +H
Sbjct: 218 EQVAQQVAFVDK-KRKRELLSQLIGEGNWQQVLVFTRTKHGANHLAEQLGKDGISAAAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP EDYVHRIGRT
Sbjct: 277 GNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEELPHVVNYELPNVAEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
GRA G A+SLV E ++ IER K++IP + G+EP I+
Sbjct: 337 GRAAATGVALSLVCVDEHKLLRDIERLLKREIPRLAVEGYEPDPSIKA 384
>gi|386002133|ref|YP_005920432.1| ATP-dependent RNA helicase [Methanosaeta harundinacea 6Ac]
gi|357210189|gb|AET64809.1| ATP-dependent RNA helicase, putative [Methanosaeta harundinacea
6Ac]
Length = 418
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 174/392 (44%), Positives = 235/392 (59%), Gaps = 25/392 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+ + + E + +AL K GY PT +Q +AIP + G DL+ +QTG+GKTAAF+LP L
Sbjct: 1 MLFEDLDIAEPLQRALTKEGYANPTPIQAEAIPHLLRGEDLLGIAQTGTGKTAAFVLPVL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + +ER R P PR LVL PTRELA Q+ + Y
Sbjct: 61 QRIS-----------------------EERRRTVPGAPRALVLAPTRELAAQIDESFGTY 97
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G +++ A ++ GG+ Q++ LSR E L+ATPGRL+D M G I+ ++ VLDE
Sbjct: 98 GQFLQFSHA-AVFGGVSQEPQVKALSRGVEALVATPGRLLDLMEQGHIDLKGIEFFVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF D+ +IV A P R ++ F+AT+ +G +A + KDP+ ++V
Sbjct: 157 ADRMLDMGFAKDVHRIVSALPKKRHSLFFAATMSREIGELAGRLLKDPVRVEVAPQATPV 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
++I Q I FVD KN LL LL+ K + + +VFT TKR AD +A L SG A +H
Sbjct: 217 ESIEQRIFFVDQ-KEKNPLLIGLLQQKFLKRVLVFTRTKRRADRVAKVLTRSGIRADAIH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD QN R L + GR+++LVATD+AARGIDV I+HV NYDLP PE YVHRIGRT
Sbjct: 276 GDRTQNQRLAALRGFKAGRLQVLVATDIAARGIDVEDISHVINYDLPNEPESYVHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQI 392
GRAGR G A S + ER ++ IER T+ +I
Sbjct: 336 GRAGRAGTAYSFCSAEERSFLRDIERLTRTKI 367
>gi|300715940|ref|YP_003740743.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
gi|299061776|emb|CAX58892.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
Length = 480
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 170/408 (41%), Positives = 246/408 (60%), Gaps = 24/408 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q QAIP ++GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNADILRAVAEQGYDEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPVL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ SS N P ++ + R L+LTPTRELA Q+ + Y
Sbjct: 61 -QLLSSHNPHPKGRRPV---------------------RALILTPTRELAAQIGENVQDY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+ ++++ + GG+ QM L ++L+ATPGRL+D + ++ S ++ILVLDE
Sbjct: 99 SKYLD-LRSLVVFGGVSINPQMMKLRSGVDVLVATPGRLLDLEHQNALDLSKVEILVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +P + V
Sbjct: 158 ADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDEIKGLAEKLLHNPEEVSVARRNTAS 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ ITQ + VD K LL +L+ Q +VFT TK A+ +A++LN G +A +H
Sbjct: 218 EQITQHVHMVDK-KRKRELLSFLIGRDNWQQVLVFTRTKHGANHLAEQLNKDGITSAAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G+I++LVATD+AARGID+ + HV N++LP PEDYVHRIGRT
Sbjct: 277 GNKSQGARTRALSDFKEGKIRVLVATDIAARGIDISELPHVVNFELPNVPEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
GRA G A+SLV E ++ IER K++IP I G+EP I+
Sbjct: 337 GRAAATGEALSLVCVDELKLLRDIERVLKREIPRMAIEGYEPDPSIKA 384
>gi|365089869|ref|ZP_09328377.1| DEAD/DEAH box helicase domain-containing protein, partial
[Acidovorax sp. NO-1]
gi|363416562|gb|EHL23666.1| DEAD/DEAH box helicase domain-containing protein, partial
[Acidovorax sp. NO-1]
Length = 441
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 176/403 (43%), Positives = 242/403 (60%), Gaps = 22/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F + L +LKA+ + GY PT +Q QAIPA + G DL+ +QTG+GKTAAF LP L
Sbjct: 1 MTFDELNLAPAILKAVHETGYETPTPIQAQAIPAVMEGHDLLAGAQTGTGKTAAFTLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ + S KN +F R LVLTPTRELA QV + Y
Sbjct: 61 HRLSQS-----AAPKN---------------KFGGKGIRALVLTPTRELAAQVEESVREY 100
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ I + + GG+ Q+ + R +IL+ATPGRL+D G ++ S +Q+LVLDE
Sbjct: 101 GKYLD-INSTVVFGGVGMNPQIDRIKRGVDILVATPGRLLDLQQQGFLDLSTVQVLVLDE 159
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+D++K++ P +Q++LFSAT + ++A + K+P ++V
Sbjct: 160 ADRMLDMGFIHDVKKVLALVPKDKQSLLFSATFSDEIRDLANTLLKNPQSIQVTPRNTTV 219
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I+Q I V K LL ++++ Q +VFT TK A+ +A+ L +G A LH
Sbjct: 220 QRISQVIHPVGRGKKKQVLL-HIIQQHNWSQVLVFTRTKFGANNVAEFLTKNGVQAMALH 278
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR + L + G I+ LVATD+AARGID+ + HV NY++P EDYVHRIGRT
Sbjct: 279 GNKSQSARTQALAGFKSGEIRALVATDIAARGIDIDDLPHVVNYEIPNVSEDYVHRIGRT 338
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPK 403
GRAG G AVSLV E + IERFTKQQIP++VI GF P+
Sbjct: 339 GRAGATGEAVSLVCMDEEGFMMDIERFTKQQIPVQVIEGFGPE 381
>gi|416896375|ref|ZP_11926222.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli STEC_7v]
gi|417118486|ref|ZP_11969004.1| ATP-dependent RNA helicase RhlE [Escherichia coli 1.2741]
gi|422800154|ref|ZP_16848652.1| DEAD/DEAH box helicase [Escherichia coli M863]
gi|323967399|gb|EGB62820.1| DEAD/DEAH box helicase [Escherichia coli M863]
gi|327253583|gb|EGE65212.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli STEC_7v]
gi|386138020|gb|EIG79180.1| ATP-dependent RNA helicase RhlE [Escherichia coli 1.2741]
Length = 454
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 170/412 (41%), Positives = 244/412 (59%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + N+AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKNLAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|110833595|ref|YP_692454.1| DEAD/DEAH box helicase [Alcanivorax borkumensis SK2]
gi|110646706|emb|CAL16182.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax
borkumensis SK2]
Length = 459
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 168/408 (41%), Positives = 246/408 (60%), Gaps = 26/408 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL + + A+ + GY P+ +Q QAIPA +SGRD++ ++QTG+GKTA F LP L
Sbjct: 1 MHFSDLGLCDALQAAVAERGYDTPSPIQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ ++ NN++ R LVLTPTRELA QV + Y
Sbjct: 61 ER----------LRTGSPARNNQV--------------RALVLTPTRELAAQVAESVATY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G + + + + GG+ QMQ L ++L+ATPGRL+D + F HL++L+LDE
Sbjct: 97 GKNLP-LTSTVVFGGVKINPQMQRLRGGCDVLVATPGRLLDLYQQNAVKFDHLEVLILDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI KI+ P RQ ++FSAT + +A+ + DP+ + ++
Sbjct: 156 ADRMLDMGFIHDIRKILAKLPPKRQNLMFSATFSSEIRALAKGLVNDPVEVDISPRNTTT 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ +TQ I VD K LL +L+++ Q +VF+ TK A+ +A +L +G AA +H
Sbjct: 216 ELVTQWIAPVDK-KRKPALLTHLIQENGWFQVLVFSRTKHGANKLAKQLEANGIEAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ QNAR R L + + G+++ LVATD+AARG+D+ + V N DLP PEDYVHRIGRT
Sbjct: 275 GNKSQNARTRALADFKSGKVRALVATDIAARGLDIEQLPQVVNVDLPNVPEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
GRAG G A+SLV+ E +K IER T+QQ+ +++ GFEP + + T
Sbjct: 335 GRAGATGQAISLVSADEFQQLKDIERLTQQQLERKIVAGFEPSEPLPT 382
>gi|292487709|ref|YP_003530582.1| ATP-dependent RNA helicase rhlE [Erwinia amylovora CFBP1430]
gi|292898944|ref|YP_003538313.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
gi|428784645|ref|ZP_19002136.1| putative ATP-dependent RNA helicase rhlE [Erwinia amylovora
ACW56400]
gi|291198792|emb|CBJ45901.1| putative ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
gi|291553129|emb|CBA20174.1| putative ATP-dependent RNA helicase rhlE [Erwinia amylovora
CFBP1430]
gi|312171822|emb|CBX80079.1| putative ATP-dependent RNA helicase rhlE [Erwinia amylovora ATCC
BAA-2158]
gi|426276207|gb|EKV53934.1| putative ATP-dependent RNA helicase rhlE [Erwinia amylovora
ACW56400]
Length = 470
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 173/408 (42%), Positives = 247/408 (60%), Gaps = 24/408 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q QAIP ++GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNADILRAVAEQGYNEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ SS N P ++ + R L+LTPTRELA QV + Y
Sbjct: 61 -QLLSSHNPHPKGRRPV---------------------RALILTPTRELAAQVGENVQDY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+ ++++ + GG+ QM L ++L+ATPGRL+D + ++ S ++ILVLDE
Sbjct: 99 SKYLD-MRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNALDLSKVEILVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +P ++V
Sbjct: 158 ADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDEIKTLAEKLLHNPEQVEVARRNTAS 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ +TQ + VD K LL L+ Q +VFT TK A+ +A++LN G AA +H
Sbjct: 218 EQVTQHVHLVDK-KRKRELLSLLIGRGNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G+I++LVATD+AARGID+ + HV NY+LP PEDYVHRIGRT
Sbjct: 277 GNKSQGARTRALSDFKDGKIRVLVATDIAARGIDIEELPHVVNYELPNVPEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
GRA G A+SLV E ++ IER K++IP I+GFEP I+
Sbjct: 337 GRAAAVGEALSLVCVDEHKLLRDIERVLKREIPRMAIDGFEPDPAIKA 384
>gi|339017995|ref|ZP_08644139.1| RNA helicase [Acetobacter tropicalis NBRC 101654]
gi|338752884|dbj|GAA07443.1| RNA helicase [Acetobacter tropicalis NBRC 101654]
Length = 436
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 166/393 (42%), Positives = 243/393 (61%), Gaps = 25/393 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F + L E +LKAL + GY PT +Q Q+IP ++GRDL+ +QTG+GKTAAF LP L
Sbjct: 3 TFSDLKLAEPLLKALAEEGYENPTPIQAQSIPHLLAGRDLLGLAQTGTGKTAAFALPILD 62
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
KN P P + R+L+L PTREL Q++ + + Y
Sbjct: 63 HLL--KNPKPA---------------------GPKKARVLILAPTRELVSQISESFKAYA 99
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+MK +A+ + GG+ RQ++ + R ++L+A PGRL+D + G I+ S L++LVLDEA
Sbjct: 100 RHMKFTQAV-VFGGVGQGRQVEAMRRGVDVLVAAPGRLLDLIGQGYIDLSALEVLVLDEA 158
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGF+ DI +I+ P RQT+LFSAT+ + ++A ++ DP ++V
Sbjct: 159 DRMLDMGFVRDIRRIMTFLPAKRQTLLFSATMPRSIADLASSLLHDPAKVEVTPPSSTVD 218
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
I Q+++FVD ++ LL L+ +V +AVVFT K +A+ +A+ LN + +A +HG
Sbjct: 219 RIQQAVMFVDGSNKRDALL-TLVESPKVVRAVVFTLMKHEANKVAEFLNKNSIVAEAIHG 277
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ Q AR R ++ R G +K+LVATD+AARGIDV ++HVFNYDLP PE YVHRIGRT
Sbjct: 278 NKSQGARERAMKGFRAGSVKVLVATDIAARGIDVDDVSHVFNYDLPNVPESYVHRIGRTA 337
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
RAGR+G+AVS + +R ++ IE+ + IP+
Sbjct: 338 RAGRDGWAVSFCDPEQRAWLRDIEKTIGKSIPV 370
>gi|121611662|ref|YP_999469.1| DEAD/DEAH box helicase domain-containing protein [Verminephrobacter
eiseniae EF01-2]
gi|121556302|gb|ABM60451.1| DEAD/DEAH box helicase domain protein [Verminephrobacter eiseniae
EF01-2]
Length = 581
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 173/403 (42%), Positives = 243/403 (60%), Gaps = 22/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F + L +LKA+ + GY PT +Q QAIPA ++G DL+ +QTG+GKTAAF LP L
Sbjct: 1 MTFDELNLAPAILKAVHETGYETPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ + + P K +F R LVLTPTRELA QV + Y
Sbjct: 61 HRLSQN----PAAKN----------------KFGGKGIRALVLTPTRELAAQVEESVREY 100
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ I + + GG+ Q++ L R +IL+ATPGRL+D G ++ + +Q+LVLDE
Sbjct: 101 GKYLA-IDSTVVFGGVGMAPQIERLQRGVDILVATPGRLLDLQQQGFVDLASVQVLVLDE 159
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI D++K++ P +Q++LFSAT + +A ++ K+P ++V
Sbjct: 160 ADRMLDMGFIQDVKKVLALVPGDKQSLLFSATFSDDIRELANSLLKNPQSIQVTPRNSTV 219
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q I V K ++L +++ Q +VFT TK A+ +A+ L +G A LH
Sbjct: 220 QRIAQVIHPVGR-GKKKQVLRHIIEQHDWSQVLVFTRTKFGANSVAEFLTKNGVNAMALH 278
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR + L + + G I+ LVATD+AARGID+ + HV NY++P PEDYVHRIGRT
Sbjct: 279 GNKSQSARTQALADFKNGDIRALVATDIAARGIDIDELPHVVNYEIPNVPEDYVHRIGRT 338
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPK 403
GRAG G AVSLV E + IERFT+QQIP++ I GF P+
Sbjct: 339 GRAGATGQAVSLVCMDEEGFMMDIERFTQQQIPVQPIEGFGPE 381
>gi|339444851|ref|YP_004710855.1| hypothetical protein EGYY_12990 [Eggerthella sp. YY7918]
gi|338904603|dbj|BAK44454.1| hypothetical protein EGYY_12990 [Eggerthella sp. YY7918]
Length = 418
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 166/426 (38%), Positives = 244/426 (57%), Gaps = 40/426 (9%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F+ +GL E L + ++G+T+PT VQ+QAIP ++GRD++ +++TG+GKTAAF LP +
Sbjct: 4 TFEDLGLSEATLSTVARLGFTEPTPVQQQAIPLVLAGRDVVAAAKTGTGKTAAFALPLIE 63
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ A + K +P PR+LV+TPTRELA Q+ AA
Sbjct: 64 RLAGDEAK-----------------------RRPGSPRVLVVTPTRELAQQIDAACSDM- 99
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+++ +S++GGMPY Q+ L++ +IL+ATPGRL D M G + ++ LVLDEA
Sbjct: 100 TRGSRVRVLSVVGGMPYKGQIARLNKGIDILIATPGRLFDLMQRGDVKLDRVETLVLDEA 159
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGF ++KIV ATP +RQT+LFSAT++ V + I DP +++ +
Sbjct: 160 DRMLDMGFWPTMKKIVAATPASRQTLLFSATIERKVMDSVSTILNDPAFVEIAHRGETAD 219
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
+ Q ++ V + K LL +L DK + +VF T++ AD+ +L +G+ +H
Sbjct: 220 TVDQYVIPVTQ-MKKPALLRAVLEDKGADRVIVFVRTRQRADMCTHQLRAAGYRVDSIHS 278
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
D Q R R L+ G+ +LVATDV ARGIDV + HV NYDLP PEDY+HRIGRTG
Sbjct: 279 DKTQAQRKRALDGFSEGKTDVLVATDVLARGIDVSLVHHVINYDLPDNPEDYIHRIGRTG 338
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE---------------PKKRI 406
RAG G+A+S V+ + + IER ++P I G++ PK R
Sbjct: 339 RAGEAGYAISFVSPDSKAALVDIERLIGSKLPTLEIEGYDTAEAVAALNAQLVAKPKNRT 398
Query: 407 RTYYSR 412
+ +SR
Sbjct: 399 ASEFSR 404
>gi|239816654|ref|YP_002945564.1| DEAD/DEAH box helicase domain-containing protein [Variovorax
paradoxus S110]
gi|239803231|gb|ACS20298.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
Length = 601
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 177/411 (43%), Positives = 247/411 (60%), Gaps = 28/411 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
MNF + L +LKA+ + GY PT +Q QAIPA + G DL+ +QTG+GKTAAF LP L
Sbjct: 1 MNFDELKLAPAILKAVHEHGYDTPTPIQAQAIPAVLEGHDLLGGAQTGTGKTAAFTLPML 60
Query: 61 HKF---ASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAAT 117
HK AS+ NK F R LVLTPTRELA QV +
Sbjct: 61 HKLSTGASATNK-----------------------FGGIGIRALVLTPTRELAAQVEESV 97
Query: 118 ERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
YG Y++ + + I GG+ Q+ L + +IL+ATPGRL+D G ++ S +Q+L+
Sbjct: 98 RTYGKYLE-LDSTVIFGGVGMNPQISKLKKGVDILVATPGRLLDLQQQGMLDLSQVQMLI 156
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
LDEADRMLDMGFI+D++KI+ P +Q++LFSAT + ++A + K+P ++V
Sbjct: 157 LDEADRMLDMGFIHDVKKILALVPKEKQSLLFSATFSDEIRDLAATLLKNPQSIQVTPRN 216
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+ ITQ I V K LL +++ + + Q +VFT TK A+ +A+ L +G A
Sbjct: 217 TTVQRITQVIHPVGR-GKKKALLAHIINENKWSQVLVFTRTKFGANSVAEFLTKNGIEAM 275
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
LHG+ Q+AR + L + G I+ LVATD+AARGID+ + HV NY++P EDYVHRI
Sbjct: 276 ALHGNKSQSARTQALAGFKSGDIRALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRI 335
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
GRTGRAG +G AVS V E +++IERFTKQ IP++ + GF P++ R
Sbjct: 336 GRTGRAGSSGEAVSFVCMDEEGFMQEIERFTKQTIPVQFVEGFGPEEGERA 386
>gi|423206578|ref|ZP_17193134.1| hypothetical protein HMPREF1168_02769 [Aeromonas veronii AMC34]
gi|404622130|gb|EKB18995.1| hypothetical protein HMPREF1168_02769 [Aeromonas veronii AMC34]
Length = 467
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 174/412 (42%), Positives = 244/412 (59%), Gaps = 25/412 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +L+A+ + GY P+ +Q+QAIPA ++GRDL+ ++QTG+GKTA F LP L
Sbjct: 1 MSFTSLGLAEPLLRAVAEQGYDTPSPIQQQAIPAVLAGRDLMAAAQTGTGKTAGFTLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ SK K+ + N+I R LVLTPTRELA QV + Y
Sbjct: 61 QRLMESKRKV---------SPNRI--------------RALVLTPTRELAAQVGESVRNY 97
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +++ + GG+ QM R ++L+A PGRL+D N + F ++ILVLDE
Sbjct: 98 GKHLP-MRSHVVFGGVSINPQMMATRRGLDVLVACPGRLMDLYNQNAVKFDEVEILVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI +I+ P RQ +LFSAT + +A + +P +++V
Sbjct: 157 ADRMLDMGFIRDIRRILALMPKKRQNLLFSATFADEIRELATGLLDNPAVIEVAPRNSTA 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q ++ D +K LL +L+ Q +VFT TK A+ +A+ L+ +G AA +H
Sbjct: 217 ERIEQ-LVHPCDKANKIALLSHLVTSNNWQQVLVFTRTKHMANRVAETLDKNGVSAAAIH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + G +K+LVATD+AARG+D+ + V N++LP EDYVHRIGRT
Sbjct: 276 GNKSQGARTRALAGFKDGSVKVLVATDIAARGLDIDKLPQVVNFELPNVAEDYVHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSR 412
GRAG G A+SLV E IK IER TKQ IP E + GFE + SR
Sbjct: 336 GRAGAAGHAISLVAADEGKLIKAIERLTKQNIPCEQVAGFEASRETLDNISR 387
>gi|414165169|ref|ZP_11421416.1| hypothetical protein HMPREF9697_03317 [Afipia felis ATCC 53690]
gi|410882949|gb|EKS30789.1| hypothetical protein HMPREF9697_03317 [Afipia felis ATCC 53690]
Length = 500
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 169/394 (42%), Positives = 239/394 (60%), Gaps = 25/394 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F+ GL + + +AL + Y PT +Q Q IP AI+GRD+I +QTG+GKTA+F LP LH
Sbjct: 3 SFQDFGLADPISRALTEENYVTPTPIQAQTIPIAITGRDVIGIAQTGTGKTASFALPILH 62
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ + R+R +P R+LVL+PTREL+ Q+ + YG
Sbjct: 63 RIL-----------------------ENRVRPQPKTCRVLVLSPTRELSGQILDSFNAYG 99
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+++ + A +GG+P RQ++ + + E+L+ATPGRL+D + + + ++ LVLDEA
Sbjct: 100 RHIR-LSATLAIGGVPMGRQVRAMMQGVEVLVATPGRLLDLVQGNAVRLNQVEFLVLDEA 158
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGFINDI K+V P RQT+ FSAT+ + +AE++ +DP + V + +
Sbjct: 159 DRMLDMGFINDIRKVVAKLPARRQTLFFSATMPKDIAELAEHMLRDPARVAVTPVASTAE 218
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
I Q I+ VD K +L L++ + V +A+VFT TK AD + L +G A +HG
Sbjct: 219 RIVQRIIQVDHSA-KPGILSELIKSEPVNRALVFTRTKHGADKVVRSLEKAGIPAQAIHG 277
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ QN R R L + R G I+ LVATD+AARGIDV ITHVFN+DLP PE YVHRIGRT
Sbjct: 278 NKSQNHRERVLASFRNGDIRTLVATDIAARGIDVDGITHVFNFDLPNVPETYVHRIGRTA 337
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIE 395
RAG G A+SLV E ++ IER T+ +P E
Sbjct: 338 RAGAEGTAISLVAGEENTYLRDIERLTRVSLPRE 371
>gi|325833432|ref|ZP_08165881.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
gi|325485356|gb|EGC87825.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
Length = 560
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 171/404 (42%), Positives = 234/404 (57%), Gaps = 35/404 (8%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
NF +GL E L A+ ++GY PT VQ QAIP + GRDLI ++ TG+GKTAAF+LP L
Sbjct: 55 NFADLGLSEAALAAVERLGYENPTPVQLQAIPLVLEGRDLIAAASTGTGKTAAFLLPILS 114
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA----T 117
K R K A PR+LV++PTRELA Q++ T
Sbjct: 115 TLPRGK------------------------RGKRA-PRVLVVSPTRELAQQISQTCMQIT 149
Query: 118 ERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
+ G Y+ ++ GG PY Q+ + R ++L+ATPGRL D MN G ++ ++ LV
Sbjct: 150 RKTGHYV-----TTVFGGTPYGPQINEIRRGTDVLIATPGRLNDLMNKGVVDLGGIKSLV 204
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
LDEADRMLDMGF+ + IVDATP RQT+LFSAT+D + ++ DP ++++
Sbjct: 205 LDEADRMLDMGFLPAVTTIVDATPADRQTLLFSATIDHSIQKNLGSLLNDPAVVEIARNG 264
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+ + + Q ++ + + K LL LL +K + +VF TK + A+ L +G+ A
Sbjct: 265 ETAQTVEQFMMPIAN-FKKPELLQALLEEKGSDRVIVFARTKNRTEDCAEALCDAGYRAE 323
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
+H D Q R R L+N RRGR ILVATDV ARGIDVP + HV N+DLP PEDYVHRI
Sbjct: 324 SIHSDKSQGQRKRALDNFRRGRTSILVATDVLARGIDVPDVDHVINFDLPDMPEDYVHRI 383
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
GRTGRAG GFAVS V R + IE+ + +P+ + +E
Sbjct: 384 GRTGRAGEQGFAVSFVTRESRRTMSDIEKLIGKNVPLMELETYE 427
>gi|387606349|ref|YP_006095205.1| putative ATP-dependent RNA helicase [Escherichia coli 042]
gi|284920649|emb|CBG33712.1| putative ATP-dependent RNA helicase [Escherichia coli 042]
Length = 454
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 170/412 (41%), Positives = 244/412 (59%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + N+AE + +PL ++V+
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKNLAEKLLHNPLEIEVSRR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|86144457|ref|ZP_01062789.1| ATP-dependent RNA helicase RhlE [Vibrio sp. MED222]
gi|85837356|gb|EAQ55468.1| ATP-dependent RNA helicase RhlE [Vibrio sp. MED222]
Length = 523
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 170/402 (42%), Positives = 242/402 (60%), Gaps = 26/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +LKA+ GY KP+ +QE+A+PA ++G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MSFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ K P +++N Q R LVLTPTRELA QV + +Y
Sbjct: 61 EMLS----KGPRVRQN--------------------QVRALVLTPTRELAAQVNGSVVKY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G+ + + + + GG+ QMQ L + ++L+ATPGRL+D N + F L+ILVLDE
Sbjct: 97 GINLP-LTSTVVFGGVKINPQMQKLRKGSDVLVATPGRLLDLYNQNAVRFDQLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ +LFSAT + ++A+ + +P+ + V+
Sbjct: 156 ADRMLDMGFIRDIRKILAFLPKKRQNLLFSATFSDDIRSLAKGLVNNPVEISVSPANSTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ QSI VD K +L L++D Q +VF+ TK A+ +A L +AP+H
Sbjct: 216 PTVEQSIYPVDK-KKKAPMLAKLIKDNDWRQVLVFSKTKHGANKLARFLEEQDITSAPIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + LEN + G++++LVATD+AARGID+P + V N+DLP EDYVHRIGRT
Sbjct: 275 GNKSQGARTKALENFKTGKVRVLVATDIAARGIDIPQLPQVVNFDLPNVSEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G A+SLV E + IER +Q + + GF P
Sbjct: 335 GRAGEVGKAISLVCADEVGELFGIERLIQQVLERRELEGFAP 376
>gi|148264031|ref|YP_001230737.1| DEAD/DEAH box helicase [Geobacter uraniireducens Rf4]
gi|146397531|gb|ABQ26164.1| DEAD/DEAH box helicase domain protein [Geobacter uraniireducens
Rf4]
Length = 438
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 169/407 (41%), Positives = 240/407 (58%), Gaps = 26/407 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+S+GL +L A+ GYT PT +Q +AIP G DL+ +QTG+GKTAAF LP +
Sbjct: 1 MSFESLGLRAELLSAIAAQGYTTPTPIQTEAIPVIFEGCDLLAGAQTGTGKTAAFALPIV 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + IP K+ +PR LVL PTRELA QV+ Y
Sbjct: 61 QRLGEN---IPPDKRR--------------------RPRALVLVPTRELAAQVSEQMNNY 97
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
+ +++ I GG+ Q++ L R +I++ATPGRL+DH G IN S ++ LVLDE
Sbjct: 98 ARRLS-LRSTMIYGGVNIQAQIERLHRGVDIVVATPGRLLDHAERGTINLSRIKFLVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLD+GFI+DI K+ + P RQTMLFSAT + +A+ + P ++V
Sbjct: 157 ADRMLDLGFIDDIHKVAEYLPAKRQTMLFSATYSQSIKQLADELLDQPRRIEVARRNIAA 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+TQ++ V+ K +L +L+ Q +VF T+ AD + + L G AA +H
Sbjct: 217 DAVTQAVYQVEKS-RKREMLSFLISKGNWNQVLVFARTRYGADKLTEELLYDGIKAAAIH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
+ Q+ R RTL +RG ++LVATDVAARG+D+ + HV NYDLP+ PEDYVHRIGRT
Sbjct: 276 SNKSQSIRTRTLAEFKRGEFRVLVATDVAARGLDIERLPHVVNYDLPQVPEDYVHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIR 407
GRAG NG A+SLV+H E+ ++ IE+ K IP++ + F P+ +R
Sbjct: 336 GRAGENGVALSLVSHEEQSLLQAIEKLLKYAIPLQTLAEF-PQYAVR 381
>gi|432769642|ref|ZP_20003995.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE50]
gi|432960359|ref|ZP_20150490.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE202]
gi|433062038|ref|ZP_20248995.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE125]
gi|431317724|gb|ELG05500.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE50]
gi|431478046|gb|ELH57805.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE202]
gi|431586954|gb|ELI58336.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE125]
Length = 454
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 170/412 (41%), Positives = 243/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD HK LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KHKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|27376558|ref|NP_768087.1| dead-box ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA
110]
gi|27349699|dbj|BAC46712.1| dead-box ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA
110]
Length = 530
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 171/395 (43%), Positives = 241/395 (61%), Gaps = 26/395 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F+ GL E + +AL + Y PT +Q Q IP A++GRD++ +QTG+GKTA+F LP LH
Sbjct: 17 SFQDFGLAEPIARALSEENYVTPTPIQAQTIPTALTGRDVVGIAQTGTGKTASFALPILH 76
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ + R++ +P R+LVL+PTREL+ Q+ + YG
Sbjct: 77 RLL-----------------------EHRIKPQPKTTRVLVLSPTRELSGQILDSFNAYG 113
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+++ ++I GG+P RQ++ L + E+L+ATPGRL+D + S + ++ LVLDEA
Sbjct: 114 RHIRLSSTLAI-GGVPMGRQVRSLMQGVEVLVATPGRLLDLVQSNGLKLGSVEFLVLDEA 172
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGFINDI KIV P+ RQT+ FSAT+ + +A+++ +DP + V + +
Sbjct: 173 DRMLDMGFINDIRKIVAKLPIKRQTLFFSATMPKDIAELADSMLRDPARVAVTPVSSTAE 232
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
I Q IL VD K L LL+D+ + +A+VFT TK AD + L +G A+ +HG
Sbjct: 233 RINQRILQVD-FSAKPAFLTKLLKDEPINRALVFTRTKHGADKVVKTLEKAGIAASAIHG 291
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ QN R RTL R G I+ LVATD+AARGIDV ITHV N+DLP PE YVHRIGRT
Sbjct: 292 NKSQNHRERTLAQFRSGDIRTLVATDIAARGIDVDGITHVINFDLPNVPETYVHRIGRTA 351
Query: 362 RAGRNGFAVSLVNHAERMN-IKKIERFTKQQIPIE 395
RAG G A+SLV E ++ ++ IER K +P E
Sbjct: 352 RAGAEGTAISLVAGGEELSYLRDIERLIKVALPRE 386
>gi|218676102|ref|YP_002394921.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
gi|218324370|emb|CAV25741.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
Length = 523
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 170/402 (42%), Positives = 242/402 (60%), Gaps = 26/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +LKA+ GY KP+ +QE+A+PA ++G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MSFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ K P +++N Q R LVLTPTRELA QV + +Y
Sbjct: 61 EMLS----KGPRVRQN--------------------QVRALVLTPTRELAAQVNGSVVKY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G+ + + + + GG+ QMQ L + ++L+ATPGRL+D N + F L+ILVLDE
Sbjct: 97 GINLP-LTSTVVFGGVKINPQMQKLRKGSDVLVATPGRLLDLYNQNAVRFDQLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ +LFSAT + ++A+ + +P+ + V+
Sbjct: 156 ADRMLDMGFIRDIRKILAFLPKKRQNLLFSATFSDDIRSLAKGLVNNPVEISVSPANSTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ QSI VD K +L L++D Q +VF+ TK A+ +A L +AP+H
Sbjct: 216 PTVEQSIYPVDK-KKKAPMLAKLIKDNDWRQVLVFSKTKHGANKLARFLEEQDITSAPIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + LEN + G++++LVATD+AARGID+P + V N+DLP EDYVHRIGRT
Sbjct: 275 GNKSQGARTKALENFKTGKVRVLVATDIAARGIDIPQLPQVVNFDLPNVSEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G A+SLV E + IER +Q + + GF P
Sbjct: 335 GRAGEVGKAISLVCADEVGELFGIERLIQQVLERRELEGFAP 376
>gi|444352450|ref|YP_007388594.1| ATP-dependent RNA helicase RhlE [Enterobacter aerogenes EA1509E]
gi|443903280|emb|CCG31054.1| ATP-dependent RNA helicase RhlE [Enterobacter aerogenes EA1509E]
Length = 446
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 172/412 (41%), Positives = 245/412 (59%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA QV
Sbjct: 61 QRLTQEQPHAKGRRPV--------------------------RALILTPTRELAAQVGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L +IL+ATPGRL+D + ++ +++L
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVSLDKVEVL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPPRRQNLLFSATFSDEIKALAEKLLHNPLEVEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ ITQ + FVD K LL L+ + Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQITQHVHFVDK-KRKRELLSQLIGEGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IER K++IP + G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKEIPRIAVAGYEPDPSIKA 384
>gi|217970063|ref|YP_002355297.1| DEAD/DEAH box helicase [Thauera sp. MZ1T]
gi|217507390|gb|ACK54401.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T]
Length = 545
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 172/412 (41%), Positives = 247/412 (59%), Gaps = 22/412 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL +L+A+ GYT+PT +Q QAIP I+G+D++ +QTG+GKTA F LP L
Sbjct: 1 MSFADLGLIPELLQAVTDAGYTEPTPIQRQAIPIVIAGKDVMGGAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ A N + H Q R L+L PTRELA+QV + + Y
Sbjct: 61 HRIARHAN-----------TSTSPARH---------QTRALILAPTRELAMQVFESVKTY 100
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
++ ++++ + GG+ Q L R EI++ATPGRL+DH+ IN S +++LVLDE
Sbjct: 101 SKHLP-LRSVCVYGGVDIRPQQAELRRGIEIVIATPGRLLDHLEQKSINLSQVEVLVLDE 159
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI++I+ P RQ++LFSAT + +A+ + K+P +++V
Sbjct: 160 ADRMLDMGFIPDIKRILALLPKQRQSLLFSATFSDEIKRLADQMLKEPQLIEVARRNMVS 219
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ IT + V + +N LL +LLR K QA+VF TK +A L SG A +H
Sbjct: 220 ETITHVVHPVSSGMKRN-LLAHLLRHKPDTQALVFVDTKLMCGRLAHYLERSGISADAIH 278
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD Q R TLE + G++++LVATDVAARG+D+ + V N++LP EDYVHRIGRT
Sbjct: 279 GDKGQQQRTDTLEAFKSGKLRVLVATDVAARGLDIDELPFVINFELPHTAEDYVHRIGRT 338
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSR 412
GRAG +G+A+SLV+ E+ + +IE+ K QIP E + GF+P SR
Sbjct: 339 GRAGHHGYAISLVSSEEKHWLSEIEKLIKLQIPQERVPGFDPDPDFHEAGSR 390
>gi|121599633|ref|YP_993994.1| putative ATP-dependent RNA helicase rhlE [Burkholderia mallei
SAVP1]
gi|121228443|gb|ABM50961.1| putative ATP-dependent RNA helicase rhlE [Burkholderia mallei
SAVP1]
Length = 473
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 170/390 (43%), Positives = 238/390 (61%), Gaps = 23/390 (5%)
Query: 13 LKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPV 72
++A+ ++GYT+PT +Q QAIPA + G DL+ +QTG+GKTA F LP L +
Sbjct: 1 MRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRL--------- 51
Query: 73 MKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISI 132
+ Y R R L+LTPTRELA QV + Y Y+K +++ +
Sbjct: 52 ---------HAFYAENRSARRAV---RALILTPTRELAAQVEESVRAYSKYVK-LRSTVM 98
Query: 133 LGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFIND 192
GG+ Q+ L R +I++ATPGRL+DHM I+ S L ILVLDEADRMLDMGFI+D
Sbjct: 99 FGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHD 158
Query: 193 IEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDD 252
I++++ P RQ +LFSAT + ++A+++ P +++V + I Q I VD
Sbjct: 159 IKRVLAKLPAKRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDR 218
Query: 253 ILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTL 312
K LL +L+R+ Q +VFT TK A+ +A++L G A +HG+ Q+AR R L
Sbjct: 219 D-RKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRAL 277
Query: 313 ENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSL 372
+ +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRTGRAG NG AVSL
Sbjct: 278 SEFKSSTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSL 337
Query: 373 VNHAERMNIKKIERFTKQQIPIEVINGFEP 402
V E+ ++ IER K++IP +VI GFEP
Sbjct: 338 VCVDEKQLLRDIERLIKREIPQQVIPGFEP 367
>gi|170754379|ref|YP_001780277.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B1 str.
Okra]
gi|429244269|ref|ZP_19207737.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum CFSAN001628]
gi|169119591|gb|ACA43427.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B1 str.
Okra]
gi|428758710|gb|EKX81114.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum CFSAN001628]
Length = 425
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 181/453 (39%), Positives = 264/453 (58%), Gaps = 41/453 (9%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+++ + + + KAL + GY K T +QE++IP + G DL+ +QTG+GKTAAF +P L
Sbjct: 1 MLFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGIDLVGCAQTGTGKTAAFAVPVL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ K +N+N P R LVL PTRELA+Q+ + E Y
Sbjct: 61 QNLSKGKK--------VNKN--------------PRPIRALVLAPTRELAIQIGDSFECY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ +K+ I GG+ Q + L +IL+ATPGR++D N I+ +++ VLDE
Sbjct: 99 GKYIN-LKSAVIFGGVSQNPQTKALREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMG I+D++KI+ P RQ +LFSAT+ + + ++I KDP+ ++V
Sbjct: 158 ADRMLDMGMIHDVKKIISKLPKVRQNLLFSATMPSEITKLVDSIVKDPIRVEVTPASSTV 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
ITQ + V K LL +LL+DK + A+VF+ TKR A++IA L +G A +H
Sbjct: 218 DTITQEVYHVRK-KQKRALLKHLLKDKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ QNAR R L N + G+I++LVATD+AARGIDV ++HVFNY+LP PE YVHRIGRT
Sbjct: 277 GNKSQNARQRALNNFKEGKIRVLVATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRYRFNNN-- 418
GRAG G A+S + E ++K IE+ ++IP+ + ++ + + NNN
Sbjct: 337 GRAGAKGVAISFCDIEETKSLKAIEKLINKEIPVVEEHPYKIRHINEDEVKKENTNNNSN 396
Query: 419 ----------NWK-THNINKSNITKRFYRQIKK 440
NW+ ++N K+N TK QIKK
Sbjct: 397 KKPSSKRQGGNWRYSNNRRKNNSTK----QIKK 425
>gi|33591417|ref|NP_879061.1| ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
gi|384202704|ref|YP_005588443.1| putative ATP-dependent RNA helicase [Bordetella pertussis CS]
gi|408417120|ref|YP_006627827.1| ATP-dependent RNA helicase [Bordetella pertussis 18323]
gi|33571059|emb|CAE40549.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
gi|332380818|gb|AEE65665.1| putative ATP-dependent RNA helicase [Bordetella pertussis CS]
gi|401779290|emb|CCJ64797.1| putative ATP-dependent RNA helicase [Bordetella pertussis 18323]
Length = 476
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 166/402 (41%), Positives = 241/402 (59%), Gaps = 24/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
++F +GL + +L+A+ GYT PT +Q QAIP + G DL+ ++QTG+GKTA F LP L
Sbjct: 5 ISFADLGLADSLLRAIADTGYTAPTPIQAQAIPLVLQGGDLLAAAQTGTGKTAGFTLPIL 64
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ +K P +K P +PR L+LTPTREL QV + + Y
Sbjct: 65 HRLMQTK---PAARK-------------------PGRPRCLILTPTRELTAQVAESVQTY 102
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y + ++ + GG+ Q+ L + +IL+ATPGRL+DH ++ S ++ILVLDE
Sbjct: 103 GKYAS-LSSMVMFGGVNINPQISALKKPLDILVATPGRLLDHAGQKTVDLSGVEILVLDE 161
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI K++ P RQ +LFSAT + ++A + DP + V
Sbjct: 162 ADRMLDMGFIRDIRKVLALLPKQRQNLLFSATFSDEIRSLARGVLNDPGEVSVTPRNTAT 221
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ +TQ++ V+ HK L+ +L+R+ Q +VFT TK A+ +A++L G A +H
Sbjct: 222 ELVTQTVHLVEQ-HHKRDLVSHLIRESGWHQVLVFTRTKHGANRLAEKLVKDGLSAVAIH 280
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + G + +LVATD+AARG+D+ + V N++LP PEDYVHRIGRT
Sbjct: 281 GNKSQSARTRALSGFKDGSVAVLVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRT 340
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G AVSLV+ +E +K IER K+ I ++G+ P
Sbjct: 341 GRAGATGAAVSLVDDSEIKLLKAIERLIKKPIERRAVDGWTP 382
>gi|317490115|ref|ZP_07948604.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
gi|316910820|gb|EFV32440.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
Length = 509
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 171/404 (42%), Positives = 234/404 (57%), Gaps = 35/404 (8%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
NF +GL E L A+ ++GY PT VQ QAIP + GRDLI ++ TG+GKTAAF+LP L
Sbjct: 3 NFADLGLSEAALAAVERLGYENPTPVQLQAIPLVLEGRDLIAAASTGTGKTAAFLLPILS 62
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA----T 117
K R K A PR+LV++PTRELA Q++ T
Sbjct: 63 TLPRGK------------------------RGKRA-PRVLVVSPTRELAQQISQTCMQIT 97
Query: 118 ERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
+ G Y+ ++ GG PY Q+ + R ++L+ATPGRL D MN G ++ ++ LV
Sbjct: 98 RKTGHYV-----TTVFGGTPYGPQINEIRRGTDVLIATPGRLNDLMNKGVVDLGGIKSLV 152
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
LDEADRMLDMGF+ + IVDATP RQT+LFSAT+D + ++ DP ++++
Sbjct: 153 LDEADRMLDMGFLPAVTTIVDATPADRQTLLFSATIDHSIQKNLGSLLNDPAVVEIARNG 212
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+ + + Q ++ + + K LL LL +K + +VF TK + A+ L +G+ A
Sbjct: 213 ETAQTVEQFMMPIAN-FKKPELLQALLEEKGSDRVIVFARTKNRTEDCAEALCDAGYRAE 271
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
+H D Q R R L+N RRGR ILVATDV ARGIDVP + HV N+DLP PEDYVHRI
Sbjct: 272 SIHSDKSQGQRKRALDNFRRGRTSILVATDVLARGIDVPDVDHVINFDLPDMPEDYVHRI 331
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
GRTGRAG GFAVS V R + IE+ + +P+ + +E
Sbjct: 332 GRTGRAGEQGFAVSFVTRESRRTMSDIEKLIGKNVPLMELETYE 375
>gi|299133793|ref|ZP_07026987.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
gi|298591629|gb|EFI51830.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
Length = 472
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 170/395 (43%), Positives = 242/395 (61%), Gaps = 28/395 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F ++GL + VL A+ GYT PT +QEQAIP + RD++ +QTG+GKTAAF+LP L
Sbjct: 1 MSFSNLGLSDKVLAAVAATGYTTPTPIQEQAIPHVLDRRDVLGIAQTGTGKTAAFVLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
T E+ R + PR L+L PTRELA QV +RY
Sbjct: 61 -------------------------TLLEKGRARARMPRTLILEPTRELAAQVKENFDRY 95
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G+ +K+ ++GG+ + Q L R ++L+ATPGRL+DH GK+ + +++LV+DE
Sbjct: 96 GVG-QKLNVALLIGGVSFGDQDAKLGRGVDVLIATPGRLLDHTERGKLLMTGVELLVIDE 154
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DIE+I P TRQT+ F+AT+ + + E +P+ ++V+
Sbjct: 155 ADRMLDMGFIPDIERICKLVPFTRQTLFFTATMPAEIRRITETFLHNPVKVEVSKPASTA 214
Query: 241 KNITQSILFVDDILHKNR-LLDYLLRD-KRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+TQ + H+ R LL LLRD K + A++F KR+ I+ L GF AA
Sbjct: 215 VTVTQFQISTGKESHEKRELLRQLLRDAKDLKNAIIFCNRKREVAILHKSLQKHGFGAAA 274
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
LHGD+ Q+AR LE R+G + +LVA+DVAARG+D+P ++HVFN+D+P P+DYVHRIG
Sbjct: 275 LHGDMDQSARMAALEQFRKGELPLLVASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRIG 334
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIP 393
RTGRAGR G A+S+V+ ++ +I IE+ Q IP
Sbjct: 335 RTGRAGRLGTAISIVSPLDQKSILAIEKLIGQSIP 369
>gi|311280327|ref|YP_003942558.1| DEAD/DEAH box helicase [Enterobacter cloacae SCF1]
gi|308749522|gb|ADO49274.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1]
Length = 446
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 245/412 (59%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F ++GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDTLGLNPEILRAVAEQGYREPTPIQKQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + P+ R L+LTPTRELA QV
Sbjct: 61 QRLVQNEPHAKGRRPI--------------------------RALILTPTRELAAQVGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L +IL+ATPGRL+D + + +++L
Sbjct: 95 VREYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNALKLDSVEVL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + ++PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLRNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL ++ + Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSQMIGEGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IER K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKEIPRIAIAGYEPDPSIKA 384
>gi|257792189|ref|YP_003182795.1| DEAD/DEAH box helicase [Eggerthella lenta DSM 2243]
gi|257476086|gb|ACV56406.1| DEAD/DEAH box helicase domain protein [Eggerthella lenta DSM 2243]
Length = 508
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 171/404 (42%), Positives = 234/404 (57%), Gaps = 35/404 (8%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
NF +GL E L A+ ++GY PT VQ QAIP + GRDLI ++ TG+GKTAAF+LP L
Sbjct: 3 NFADLGLSEAALAAVERLGYENPTPVQLQAIPLVLEGRDLIAAASTGTGKTAAFLLPILS 62
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA----T 117
K R K A PR+LV++PTRELA Q++ T
Sbjct: 63 TLPRGK------------------------RGKRA-PRVLVVSPTRELAQQISQTCMQIT 97
Query: 118 ERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
+ G Y+ ++ GG PY Q+ + R ++L+ATPGRL D MN G ++ ++ LV
Sbjct: 98 RKTGHYV-----TTVFGGTPYGPQINEIRRGTDVLIATPGRLNDLMNKGVVDLGGIKSLV 152
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
LDEADRMLDMGF+ + IVDATP RQT+LFSAT+D + ++ DP ++++
Sbjct: 153 LDEADRMLDMGFLPAVTTIVDATPADRQTLLFSATIDHSIQKNLGSLLNDPAVVEIARNG 212
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+ + + Q ++ + + K LL LL +K + +VF TK + A+ L +G+ A
Sbjct: 213 ETAQTVEQFMMPIAN-FKKPELLQALLEEKGSDRVIVFARTKNRTEDCAEALCDAGYRAE 271
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
+H D Q R R L+N RRGR ILVATDV ARGIDVP + HV N+DLP PEDYVHRI
Sbjct: 272 SIHSDKSQGQRKRALDNFRRGRTSILVATDVLARGIDVPDVDHVINFDLPDMPEDYVHRI 331
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
GRTGRAG GFAVS V R + IE+ + +P+ + +E
Sbjct: 332 GRTGRAGEQGFAVSFVTRESRRTMSDIEKLIGKNVPLMELETYE 375
>gi|423199899|ref|ZP_17186479.1| hypothetical protein HMPREF1167_00062 [Aeromonas veronii AER39]
gi|404621511|gb|EKB18398.1| hypothetical protein HMPREF1167_00062 [Aeromonas veronii AER39]
Length = 466
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 171/404 (42%), Positives = 240/404 (59%), Gaps = 25/404 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +L+A+ + GY P+ +Q+QAIPA ++GRDL+ ++QTG+GKTA F LP L
Sbjct: 1 MSFTSLGLAEPLLRAVAEQGYDTPSPIQQQAIPAVLAGRDLMAAAQTGTGKTAGFTLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ SK K+ P + R LVLTPTRELA QV + Y
Sbjct: 61 QRLMESKRKV-----------------------SPNRIRALVLTPTRELAAQVGESVRNY 97
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +++ + GG+ QM R ++L+A PGRL+D N + F ++ILVLDE
Sbjct: 98 GKHLP-MRSHVVFGGVSINPQMMATRRGLDVLVACPGRLMDLYNQNAVKFDEVEILVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI +I+ P RQ +LFSAT + +A + +P +++V
Sbjct: 157 ADRMLDMGFIRDIRRILALMPKKRQNLLFSATFADEIRELATGLLDNPAVIEVAPRNSTA 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q ++ D +K LL +L+ Q +VFT TK A+ +A+ L+ +G AA +H
Sbjct: 217 ERIEQ-LVHPCDKANKIALLSHLVTSNNWQQVLVFTRTKHMANRVAETLDKNGVSAAAIH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + G +K+LVATD+AARG+D+ + V N++LP EDYVHRIGRT
Sbjct: 276 GNKSQGARTRALAGFKDGSVKVLVATDIAARGLDIDKLPQVVNFELPNVAEDYVHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRAG G A+SLV E IK IER TKQ IP E + GFE +
Sbjct: 336 GRAGAAGHAISLVAADEGKLIKAIERLTKQNIPCEQVAGFEASR 379
>gi|406677038|ref|ZP_11084223.1| hypothetical protein HMPREF1170_02431 [Aeromonas veronii AMC35]
gi|404625352|gb|EKB22169.1| hypothetical protein HMPREF1170_02431 [Aeromonas veronii AMC35]
Length = 466
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 171/404 (42%), Positives = 240/404 (59%), Gaps = 25/404 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +L+A+ + GY P+ +Q+QAIPA ++GRDL+ ++QTG+GKTA F LP L
Sbjct: 1 MSFTSLGLAEPLLRAVAEQGYDTPSPIQQQAIPAVLAGRDLMAAAQTGTGKTAGFTLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ SK K+ P + R LVLTPTRELA QV + Y
Sbjct: 61 QRLMESKRKV-----------------------SPNRIRALVLTPTRELAAQVGESVRNY 97
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +++ + GG+ QM R ++L+A PGRL+D N + F ++ILVLDE
Sbjct: 98 GKHLP-MRSHVVFGGVSINPQMMATRRGLDVLVACPGRLMDLYNQNAVKFDEVEILVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI +I+ P RQ +LFSAT + +A + +P +++V
Sbjct: 157 ADRMLDMGFIRDIRRILALMPKKRQNLLFSATFADEIRELATGLLDNPAVIEVAPRNSTA 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q ++ D +K LL +L+ Q +VFT TK A+ +A+ L+ +G AA +H
Sbjct: 217 ERIEQ-LVHPCDKANKIALLSHLVTSNNWQQVLVFTRTKHMANRVAETLDKNGVSAAAIH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + G +K+LVATD+AARG+D+ + V N++LP EDYVHRIGRT
Sbjct: 276 GNKSQGARTRALAGFKDGSVKVLVATDIAARGLDIDKLPQVVNFELPNVAEDYVHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRAG G A+SLV E IK IER TKQ IP E + GFE +
Sbjct: 336 GRAGAAGHAISLVAADEGKLIKAIERLTKQNIPCEQVAGFEASR 379
>gi|440684899|ref|YP_007159694.1| DEAD/DEAH box helicase domain protein [Anabaena cylindrica PCC
7122]
gi|428682018|gb|AFZ60784.1| DEAD/DEAH box helicase domain protein [Anabaena cylindrica PCC
7122]
Length = 450
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 173/400 (43%), Positives = 237/400 (59%), Gaps = 21/400 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F ++GL +++A+ + GYTKPT +Q QAIPA +SG DL+ +QTG+GKTA+F LP L
Sbjct: 1 MSFSNLGLSNEIIRAVTERGYTKPTPIQMQAIPAVLSGGDLLAGAQTGTGKTASFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
HK +S +N + + P R L+LTPTRELA QV + Y
Sbjct: 61 HKLSSDQN-----------------VKSSAIGWLPI--RALILTPTRELAAQVEESVHDY 101
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+K +K+ + GG+ Q + L +IL+ATPGRL+DH+ G +N S ++ILVLDE
Sbjct: 102 GKYLK-LKSTVVFGGVSINPQKRQLKSGVDILVATPGRLLDHLQQGTVNLSRIEILVLDE 160
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI +I+ P RQ +LF AT + +A + P +++V
Sbjct: 161 ADRMLDMGFIRDIRRILSILPKQRQNLLFFATFSDKIKELASGLLNRPTMIEVARRNVTA 220
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
I Q VD K +LL +L+R Q +VFT TK AD + +LN A +H
Sbjct: 221 DTIAQRAYQVDRD-KKRQLLAHLIRQDNWYQVLVFTRTKYGADRLVRQLNDDRIQALAIH 279
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR L + G +++LVATD+AARG+D+ + HV N+DLP PEDYVHRIGRT
Sbjct: 280 GNKSQGARTHALAKFKNGSLQVLVATDIAARGLDISELPHVVNFDLPNVPEDYVHRIGRT 339
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGF 400
GRAG G AVSLV E + IE+ KQ + +EV+ GF
Sbjct: 340 GRAGAKGEAVSLVCVDEFHLLADIEKLIKQPLSLEVVAGF 379
>gi|308186129|ref|YP_003930260.1| ATP-dependent RNA helicase rhlE [Pantoea vagans C9-1]
gi|308056639|gb|ADO08811.1| Putative ATP-dependent RNA helicase rhlE [Pantoea vagans C9-1]
Length = 456
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 170/408 (41%), Positives = 244/408 (59%), Gaps = 24/408 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY++PT +Q QAIP ++GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSADILRAVAEQGYSEPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
K +++ I R R +P R L+LTPTRELA QV Y
Sbjct: 61 QKLSATATPI-------------------RGR-RPV--RALILTPTRELAAQVGENVSDY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+ ++++ + GG+ QM L ++L+ATPGRL+D ++ S ++ILVLDE
Sbjct: 99 SKYLS-LRSLVVFGGVSINPQMVKLRGGVDVLVATPGRLLDLAQQNAVDLSQVEILVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +P +++V
Sbjct: 158 ADRMLDMGFIHDIRRVLARLPAKRQNLLFSATFSDEIKGLAEKLLTNPEMIEVARRNTAS 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q + FVD K LL L+ + Q +VFT TK A+ +A++L G AA +H
Sbjct: 218 EQVAQQVHFVDK-KRKRELLSQLIGEGNWQQVLVFTRTKHGANHLAEQLGKDGITAAAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP EDYVHRIGRT
Sbjct: 277 GNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEELPHVVNYELPNVAEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
GRA G A+SLV E ++ IER K++IP I G+EP I+
Sbjct: 337 GRAAATGVALSLVCVDEHKLLRDIERLLKREIPRLAIEGYEPDPSIKA 384
>gi|283779149|ref|YP_003369904.1| DEAD/DEAH box helicase [Pirellula staleyi DSM 6068]
gi|283437602|gb|ADB16044.1| DEAD/DEAH box helicase domain protein [Pirellula staleyi DSM 6068]
Length = 598
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 171/395 (43%), Positives = 244/395 (61%), Gaps = 23/395 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+ +GL E +++AL YT+PT +Q QAIP AI+GRDL +QTG+GKTAAF LP L
Sbjct: 1 MSFEDLGLAEPLVRALNAANYTEPTAIQLQAIPPAIAGRDLQGCAQTGTGKTAAFALPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ KN Q K R R PR LVL+PTRELA Q+ + RY
Sbjct: 61 DRLI----------KNPRQG-------KLRGRL----PRALVLSPTRELAGQIHDSVRRY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G + + +++I GG+ + Q++ L+ ++L+ATPGRL D M G IN S +++ VLDE
Sbjct: 100 GRHAMQ-NSLTIYGGVSQVPQVKGLNAGQDVLIATPGRLCDLMQQGYINLSEIEVFVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF+ DI +I+ P +QT+LFSAT+ + +A + DP+ + +
Sbjct: 159 ADRMLDMGFMPDIRRIIAKLPQQKQTLLFSATMPPEIQKLASQLLHDPVEINIEPERATA 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
ITQS+ +V HK LL +L+ + V +AVVF TK + A +L +G +H
Sbjct: 219 DGITQSLYYVP-TKHKPELLASVLKREEVTRAVVFVRTKHGCNKAALQLEKTGLKVDAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR RTL + G I++LVATDVAARG+DV ++HV NYDLP PE YVHRIGRT
Sbjct: 278 GNKSQSARQRTLYAFKNGHIQVLVATDVAARGLDVTGVSHVINYDLPMEPETYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIE 395
GRAG++G A+S + +R ++ ++R ++IP+E
Sbjct: 338 GRAGKSGIAISFCDDEQRGLLRDVQRILGKKIPVE 372
>gi|336249396|ref|YP_004593106.1| ATP-dependent RNA helicase RhlE [Enterobacter aerogenes KCTC 2190]
gi|334735452|gb|AEG97827.1| ATP-dependent RNA helicase RhlE [Enterobacter aerogenes KCTC 2190]
Length = 446
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 172/412 (41%), Positives = 245/412 (59%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA QV
Sbjct: 61 QRLTQDQPHAKGRRPV--------------------------RALILTPTRELAAQVGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L +IL+ATPGRL+D + ++ +++L
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVSLDKVEVL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPPRRQNLLFSATFSDEIKALAEKLLHNPLEVEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ ITQ + FVD K LL L+ + Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQITQHVHFVDK-KRKRELLSQLIGEGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IER K++IP + G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKEIPRIAVAGYEPDPSIKA 384
>gi|304413058|ref|ZP_07394531.1| RNA helicase [Candidatus Regiella insecticola LSR1]
gi|304283901|gb|EFL92294.1| RNA helicase [Candidatus Regiella insecticola LSR1]
Length = 446
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 169/409 (41%), Positives = 253/409 (61%), Gaps = 26/409 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + Y+ PT +QE+AIP ++GRDL+ S+QTG+GKTA F LP L
Sbjct: 36 MSFDSLGLNADILRAITEQKYSAPTPIQEKAIPEVLAGRDLMASAQTGTGKTAGFTLPLL 95
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP-RMLVLTPTRELALQVTAATER 119
+ +++ I K +P R L+LTPTRELA Q+ +
Sbjct: 96 QLLSENQSLI-----------------------KGRRPVRALILTPTRELAAQIGDNVKN 132
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y ++K ++++ + GG+ QM L +IL+ATPGRL+D + ++ + ++ILVLD
Sbjct: 133 YSEFLK-LRSMVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVDLAKIEILVLD 191
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DI +I+ P RQ +LFSAT + +A+ + +P ++V+
Sbjct: 192 EADRMLDMGFIHDIRRILAKLPAKRQNLLFSATFSNDIKLLAKKLLNNPAYIEVSPGNTT 251
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
K+ITQ + FVD K +LL Y++ + Q +VF TK A+ +A++LN G AA +
Sbjct: 252 AKHITQRVHFVDKS-RKRQLLSYMIGSQNWQQVLVFNRTKHGANHLAEQLNKDGITAAAI 310
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HG+ Q AR R L + + G+I++LVATD+AARG+D+ + HV NY+LP PEDYVHRIGR
Sbjct: 311 HGNKSQGARTRALADFKDGKIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGR 370
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
TGRA +G A+SLV E ++ IER K +IP I+G++P I+
Sbjct: 371 TGRAECSGEAISLVCVDEHKLLRDIERLLKNEIPRIAIDGYQPDPTIKA 419
>gi|333909234|ref|YP_004482820.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas
posidonica IVIA-Po-181]
gi|333479240|gb|AEF55901.1| DEAD/DEAH box helicase domain protein [Marinomonas posidonica
IVIA-Po-181]
Length = 457
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 170/402 (42%), Positives = 246/402 (61%), Gaps = 26/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL +LKA+ + GYT+P+ +Q QAIPA + G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MSFTKLGLSAPILKAIEEQGYTEPSPIQAQAIPAVLEGQDVMAAAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
K ++ P+ K N Q R LVLTPTRELA QV + + Y
Sbjct: 61 EKLSAG----PLAKSN--------------------QVRALVLTPTRELAAQVAESVKNY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +K+ + GG+ QM L R ++L+ATPGRL+D N + F L++L+LDE
Sbjct: 97 GQHLP-LKSTVVFGGVKINPQMMALRRGADVLIATPGRLLDLYNQNALKFDQLEVLILDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI+K++ P RQ +LFSAT + ++A+ + +P+ + V
Sbjct: 156 ADRMLDMGFIHDIKKVLAILPKKRQNLLFSATFSPEIRDLAKGLVNNPVEISVTPRNATA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
K++ Q + VD + L+D L+ D + QA+VF+ TK A+ I +L +G A+ +H
Sbjct: 216 KSVEQWLHPVDKKQKIDLLID-LIADGQWQQALVFSRTKHGANKITKQLEDAGIRASAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + GRI+ILVATD+AARGID+ + HV N+DLP EDYVHRIGRT
Sbjct: 275 GNKSQGARTRALADFKEGRIRILVATDIAARGIDIEELPHVVNFDLPDVAEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRA G A+SLV+ E +K IER T++ I ++ F P
Sbjct: 335 GRANATGQAISLVSADELEQLKAIERLTQKLIERRYVDDFFP 376
>gi|58038681|ref|YP_190645.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
gi|58001095|gb|AAW59989.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
Length = 431
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 175/396 (44%), Positives = 239/396 (60%), Gaps = 31/396 (7%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F + L E + KAL + GYT PT +Q AIP + GRDL+ +QTG+GKTAAF LP L
Sbjct: 3 SFAELKLAEPIQKALAEEGYTTPTPIQAGAIPYLLEGRDLLGLAQTGTGKTAAFALPIL- 61
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP---RMLVLTPTRELALQVTAATE 118
N I+T++ +PA P R LVL PTRELA Q+ +
Sbjct: 62 --------------------NHIFTNR-----RPAPPKGVRALVLAPTRELASQIGESFA 96
Query: 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
Y +MK A+ + GG+ RQ++ R ++L+A PGRL+D + I+ S L+ILVL
Sbjct: 97 AYARHMKFSYAV-VFGGVGQGRQIETTRRGVDVLVAAPGRLLDLIGQKHIDLSTLEILVL 155
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF+ DI++I+ P RQT+LFSAT+ + ++A ++ K+P ++V
Sbjct: 156 DEADRMLDMGFVRDIQRIMALLPKQRQTLLFSATMPPSISDLAHSLLKNPATVQVTPESS 215
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
I Q+++FVD K+ L LL V +AVVFT K +A+ +A+ LN +G A
Sbjct: 216 TVDRINQAVMFVDSGSKKDAAL-MLLESPSVARAVVFTLMKHEANKVAEFLNKNGIRAEA 274
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ Q AR R + R G IK LVATD+AARGIDV ++HVFNYDLP PE YVHRIG
Sbjct: 275 IHGNKSQGARERAMAGFRSGAIKALVATDIAARGIDVDEVSHVFNYDLPNVPESYVHRIG 334
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
RT RAGR G AVSL + +R +K IE+ + IP+
Sbjct: 335 RTARAGREGCAVSLCDAEQRAWLKDIEKKIGKPIPV 370
>gi|304395765|ref|ZP_07377648.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
gi|304357059|gb|EFM21423.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
Length = 457
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 169/408 (41%), Positives = 244/408 (59%), Gaps = 24/408 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY++PT +Q QAIP ++GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSADILRAVAEQGYSEPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
K +++ I R R +P R L+LTPTRELA QV Y
Sbjct: 61 QKLSATATPI-------------------RGR-RPV--RALILTPTRELAAQVGENVSDY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+ ++++ + GG+ QM L +IL+ATPGRL+D ++ S +++LVLDE
Sbjct: 99 SKYLS-LRSMVVFGGVSINPQMVKLRGGVDILVATPGRLLDLAQQNAVDLSQVEVLVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +P +++V
Sbjct: 158 ADRMLDMGFIHDIRRVLARLPAKRQNLLFSATFSDEIKGLAEKLLTNPEMIEVARRNTAS 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q + FVD K LL L+ + Q +VFT TK A+ +A++L G AA +H
Sbjct: 218 EQVAQQVAFVDK-KRKRELLSQLIGEGNWQQVLVFTRTKHGANHLAEQLGKDGISAAAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP EDYVHRIGRT
Sbjct: 277 GNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEELPHVVNYELPNVAEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
GRA G A+SLV E ++ IER K++IP + G+EP I+
Sbjct: 337 GRAAATGVALSLVCVDEHKLLRDIERLLKREIPRLAVEGYEPDPSIKA 384
>gi|345876776|ref|ZP_08828539.1| hypothetical protein Rifp1Sym_ag00100 [endosymbiont of Riftia
pachyptila (vent Ph05)]
gi|344226165|gb|EGV52505.1| hypothetical protein Rifp1Sym_ag00100 [endosymbiont of Riftia
pachyptila (vent Ph05)]
Length = 547
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 176/409 (43%), Positives = 247/409 (60%), Gaps = 31/409 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+ +GL +L+A+ + GYT+PT VQ+QAIP +SGRD++ +QTG+GKTA F LP L
Sbjct: 63 MSFEKLGLSAPILRAVSEQGYTQPTPVQQQAIPVILSGRDVMAGAQTGTGKTAGFTLPLL 122
Query: 61 HK---FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAAT 117
A K + PV R LVLTPTRELA QV +
Sbjct: 123 ELLEEHAQGKGRRPV--------------------------RALVLTPTRELAAQVGESV 156
Query: 118 ERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
E+YG Y+ +K+ I GG+ Q++ L +IL+ATPGRL+DH++ ++ SH++ILV
Sbjct: 157 EQYGKYLP-LKSTVIFGGVKINPQIEKLRHGVDILVATPGRLLDHVSQKTLDLSHIEILV 215
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
LDEADRMLDMGFI+DI K++ P RQ +LFSAT + +A ++ P ++V
Sbjct: 216 LDEADRMLDMGFIHDIRKVLRLLPHERQNLLFSATYSQEIKRLASDLLNQPEQIEVARRN 275
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+ ++Q + VD K LL +++ Q +VFT TK A+ +A +L G AA
Sbjct: 276 TAAELVSQVVYPVDKA-RKRELLSHMIGANNWRQVLVFTRTKHGANRLAQQLEKDGLSAA 334
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
+HG+ Q AR R L N + G +++LVATD+AARG+D+ + HV NY+LP PEDYVHRI
Sbjct: 335 AIHGNKSQGARTRALANFKSGEVRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRI 394
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
GRTGRAG G AVSLV E ++ IER K++I +V+ G+EP I
Sbjct: 395 GRTGRAGNEGEAVSLVCIDEHKLLRDIERLLKRKITEKVLPGYEPDPSI 443
>gi|345863156|ref|ZP_08815368.1| ATP-dependent RNA helicase RhlE [endosymbiont of Tevnia jerichonana
(vent Tica)]
gi|345125617|gb|EGW55485.1| ATP-dependent RNA helicase RhlE [endosymbiont of Tevnia jerichonana
(vent Tica)]
Length = 485
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 176/409 (43%), Positives = 247/409 (60%), Gaps = 31/409 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+ +GL +L+A+ + GYT+PT VQ+QAIP +SGRD++ +QTG+GKTA F LP L
Sbjct: 1 MSFEKLGLSAPILRAVSEQGYTQPTPVQQQAIPVILSGRDVMAGAQTGTGKTAGFTLPLL 60
Query: 61 HK---FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAAT 117
A K + PV R LVLTPTRELA QV +
Sbjct: 61 ELLEEHAQGKGRRPV--------------------------RALVLTPTRELAAQVGESV 94
Query: 118 ERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
E+YG Y+ +K+ I GG+ Q++ L +IL+ATPGRL+DH++ ++ SH++ILV
Sbjct: 95 EQYGKYLP-LKSTVIFGGVKINPQIEKLRHGVDILVATPGRLLDHVSQKTLDLSHIEILV 153
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
LDEADRMLDMGFI+DI K++ P RQ +LFSAT + +A ++ P ++V
Sbjct: 154 LDEADRMLDMGFIHDIRKVLRLLPHERQNLLFSATYSQEIKRLASDLLNQPEQIEVARRN 213
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+ ++Q + VD K LL +++ Q +VFT TK A+ +A +L G AA
Sbjct: 214 TAAELVSQVVYPVDKA-RKRELLSHMIGANNWRQVLVFTRTKHGANRLAQQLEKDGLSAA 272
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
+HG+ Q AR R L N + G +++LVATD+AARG+D+ + HV NY+LP PEDYVHRI
Sbjct: 273 AIHGNKSQGARTRALANFKSGEVRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRI 332
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
GRTGRAG G AVSLV E ++ IER K++I +V+ G+EP I
Sbjct: 333 GRTGRAGNEGEAVSLVCIDEHKLLRDIERLLKRKITEKVLPGYEPDPSI 381
>gi|440759128|ref|ZP_20938281.1| ATP-dependent RNA helicase RhlE [Pantoea agglomerans 299R]
gi|436427144|gb|ELP24828.1| ATP-dependent RNA helicase RhlE [Pantoea agglomerans 299R]
Length = 457
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 169/408 (41%), Positives = 244/408 (59%), Gaps = 24/408 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY++PT +Q QAIP ++GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSADILRAVAEQGYSEPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
K +++ I R R +P R L+LTPTRELA QV Y
Sbjct: 61 QKLSATATPI-------------------RGR-RPV--RALILTPTRELAAQVGENVSDY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+ ++++ + GG+ QM L +IL+ATPGRL+D ++ S +++LVLDE
Sbjct: 99 SKYLS-LRSMVVFGGVSINPQMVKLRGGVDILVATPGRLLDLAQQNAVDLSQVEVLVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +P +++V
Sbjct: 158 ADRMLDMGFIHDIRRVLARLPAKRQNLLFSATFSDEIKGLAEKLLTNPEMIEVARRNTAS 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q + FVD K LL L+ + Q +VFT TK A+ +A++L G AA +H
Sbjct: 218 EQVAQQVAFVDK-KRKRELLSQLIGEGNWQQVLVFTRTKHGANHLAEQLGKDGISAAAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP EDYVHRIGRT
Sbjct: 277 GNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEELPHVVNYELPNVAEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
GRA G A+SLV E ++ IER K++IP + G+EP I+
Sbjct: 337 GRAAATGVALSLVCVDEHKLLRDIERLLKREIPRLAVEGYEPDPSIKA 384
>gi|218549636|ref|YP_002383427.1| ATP-dependent RNA helicase RhlE [Escherichia fergusonii ATCC 35469]
gi|218357177|emb|CAQ89812.1| RNA helicase [Escherichia fergusonii ATCC 35469]
Length = 454
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 170/412 (41%), Positives = 243/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + N+AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKNLAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|254428186|ref|ZP_05041893.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881]
gi|196194355|gb|EDX89314.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881]
Length = 457
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 167/404 (41%), Positives = 244/404 (60%), Gaps = 26/404 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL + + A+ + GY P+ +Q QAIPA +SGRD++ ++QTG+GKTA F LP L
Sbjct: 1 MHFSDLGLCDALQAAVAERGYDTPSPIQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ ++ NN++ R LVLTPTRELA QV + Y
Sbjct: 61 ER----------LRTGTPARNNQV--------------RALVLTPTRELAAQVAESVSTY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G + ++ + GG+ QMQ L ++L+ATPGRL+D + F HL++L+LDE
Sbjct: 97 GKNLPLTSSV-VFGGVKINPQMQRLRGGCDVLVATPGRLLDLYQQNAVKFDHLEVLILDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI KI+ P RQ ++FSAT + +A+ + DP+ + ++
Sbjct: 156 ADRMLDMGFIHDIRKILSKLPPKRQNLMFSATFSPEIRALAKGLVNDPVEVDISPRNTTT 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ +TQ I VD K LL +L+++ Q +VF+ TK A+ +A +L +G AA +H
Sbjct: 216 ELVTQWIAPVDK-KRKPALLTHLIQEHGWFQVLVFSRTKHGANKLAKQLEANGIEAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ QNAR R L + + G+++ LVATD+AARG+D+ + V N DLP PEDYVHRIGRT
Sbjct: 275 GNKSQNARTRALADFKNGKVRALVATDIAARGLDIEQLPQVVNVDLPNVPEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRAG G A+SLV+ E +K IER T+QQ+ +++ GFEP +
Sbjct: 335 GRAGATGQAISLVSADEFQQLKDIERLTQQQLERKIVAGFEPGE 378
>gi|237747736|ref|ZP_04578216.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
gi|229379098|gb|EEO29189.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
Length = 469
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 180/455 (39%), Positives = 262/455 (57%), Gaps = 33/455 (7%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F+ GL +LKAL +GY PT +Q QAIP + G+D++ ++QTG+GKTA + LP L
Sbjct: 17 FEDFGLSPDILKALDDLGYVSPTPIQVQAIPLVLEGKDVMGAAQTGTGKTAGYSLPMLQS 76
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQ-P-RMLVLTPTRELALQVTAATERY 120
S N PA+ P R L+L PTRELA QV +RY
Sbjct: 77 LLFSANT----------------------SMSPARHPVRALILVPTRELADQVFEDVKRY 114
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y +K+ + GG+ Q +L EIL+ATPGRL+DH+ +N SH QILVLDE
Sbjct: 115 AKYTP-VKSAVVFGGVDISSQTSILRAGVEILIATPGRLLDHVQQKNVNLSHTQILVLDE 173
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF+ D+++IV+ P RQ +LFSAT + +A + KDP+ ++V
Sbjct: 174 ADRMLDMGFLPDLQRIVNLLPKQRQNLLFSATFSNDIKKLARSFMKDPVTVEVARQNATA 233
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+N+ Q++ +++ KN +++LL+D+ Q ++F+ TK A +A +L G A+ +H
Sbjct: 234 ENVKQTVYRIEES-EKNAAVEHLLKDRNQEQVLIFSNTKAGASRLARQLERKGMKASAIH 292
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD Q R TLE + G I ILVATDVAARG+ + + V N+DLP EDYVHRIGRT
Sbjct: 293 GDKTQAERMATLEAFKSGSIDILVATDVAARGLHIEELPCVINFDLPFVAEDYVHRIGRT 352
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIR-----TYYSRYRF 415
GRAG G A+SL + + +K+IE+ TK+Q+P+E + FE +K + T Y + RF
Sbjct: 353 GRAGSKGEAISLYSEKDERLLKEIEKLTKRQLPLEKLTDFEREKHVSPETGGTAYGK-RF 411
Query: 416 NNNNWKTHNINKSNITKRFYRQIKKTSISASSKNS 450
+ + +K+ + K + ++ Q S + S K S
Sbjct: 412 DRSPYKSVGLEKKS-KDPWFDQPYVPSATKSDKES 445
>gi|218699169|ref|YP_002406798.1| ATP-dependent RNA helicase RhlE [Escherichia coli IAI39]
gi|386623197|ref|YP_006142925.1| ATP-dependent RNA helicase [Escherichia coli O7:K1 str. CE10]
gi|218369155|emb|CAR16910.1| RNA helicase [Escherichia coli IAI39]
gi|349736935|gb|AEQ11641.1| ATP-dependent RNA helicase [Escherichia coli O7:K1 str. CE10]
Length = 453
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 170/412 (41%), Positives = 243/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + N+AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKNLAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|422782366|ref|ZP_16835151.1| DEAD/DEAH box helicase [Escherichia coli TW10509]
gi|323976817|gb|EGB71905.1| DEAD/DEAH box helicase [Escherichia coli TW10509]
Length = 454
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 170/412 (41%), Positives = 243/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + N+AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKNLAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|430808618|ref|ZP_19435733.1| RNA helicase, partial [Cupriavidus sp. HMR-1]
gi|429498999|gb|EKZ97465.1| RNA helicase, partial [Cupriavidus sp. HMR-1]
Length = 423
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 172/403 (42%), Positives = 247/403 (61%), Gaps = 21/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL + +++A+ + GYT PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFSELGLSDKLVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP--RMLVLTPTRELALQVTAATE 118
+ S + N N + A+P R LVLTPTRELA QV +
Sbjct: 61 QLLSESAARA-------NGGNAP----------RGARPNVRALVLTPTRELAAQVEESVR 103
Query: 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
YG Y+K ++++ + GG+ Q++ L R +I++ATPGRL+DH+ I+ SH+++LVL
Sbjct: 104 NYGKYLK-LRSMVMFGGVGINPQIEALRRGVDIVVATPGRLLDHVAQRTIDLSHVELLVL 162
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI+DI K+++ P RQ +LFSAT + +A+ + +P ++V
Sbjct: 163 DEADRMLDMGFIHDIRKVLNVLPPKRQNLLFSATFSDEIRALADRLLDNPASIEVARRNT 222
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ + Q + VD K LL +L+R Q +VFT TK A+ +A++L G A
Sbjct: 223 TAETVAQRVFPVDR-ERKRELLAHLVRQHDWHQVLVFTRTKHGANRLAEQLTKDGLSALA 281
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ Q+AR R L + G +++LVATD+AARGID+ + HV N+DLP PEDYVHRIG
Sbjct: 282 IHGNKSQSARTRALTEFKAGTLRLLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIG 341
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAG G A+SLV E ++ IER K+QI ++ GFE
Sbjct: 342 RTGRAGAEGEAISLVCVDEHGLLRDIERLIKRQIEQVLLPGFE 384
>gi|385787804|ref|YP_005818913.1| ATP-dependent RNA helicase RhlE [Erwinia sp. Ejp617]
gi|310767076|gb|ADP12026.1| ATP-dependent RNA helicase RhlE [Erwinia sp. Ejp617]
Length = 469
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 173/408 (42%), Positives = 247/408 (60%), Gaps = 24/408 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q QAIP ++GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNADILRAVAEQGYNEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ SS N P ++ + R L+LTPTRELA QV + Y
Sbjct: 61 -QLLSSHNPHPKGRRPV---------------------RALILTPTRELAAQVGENVQDY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+ ++++ + GG+ QM L ++L+ATPGRL+D + ++ S ++ILVLDE
Sbjct: 99 SKYLD-MRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNALDLSKVEILVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +P ++V
Sbjct: 158 ADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDEIKILAEKLLHNPEQVEVARRNTAS 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ +TQ + VD K LL L+ Q +VFT TK A+ +A++LN G AA +H
Sbjct: 218 EQVTQHVHLVDK-KRKRELLSLLIGRGNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G+I++LVATD+AARGID+ + HV NY+LP PEDYVHRIGRT
Sbjct: 277 GNKSQGARTRALSDFKDGKIRVLVATDIAARGIDIEELPHVVNYELPNVPEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
GRA G A+SLV E ++ IER K++IP I+GFEP I+
Sbjct: 337 GRAAAVGEALSLVCVDEHKLLRDIERVLKREIPRMAIDGFEPDPSIKA 384
>gi|254417807|ref|ZP_05031531.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
gi|196183984|gb|EDX78960.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
Length = 510
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 166/392 (42%), Positives = 240/392 (61%), Gaps = 25/392 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F+S+GL++ +L+AL GYTKPT +QE+AIP + G+DL+ +QTG+GKTAAF LP LH
Sbjct: 17 TFESMGLNKALLQALASEGYTKPTPIQEKAIPDVMQGKDLLGIAQTGTGKTAAFALPILH 76
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ A + R+ KP R+LVL+PTRELA Q+ + + YG
Sbjct: 77 RLAEN-----------------------RIAPKPRTTRVLVLSPTRELATQIGDSFKAYG 113
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
++ + I GG+ Y Q + L + +IL+A PGRL+DH+ ++ S +ILVLDEA
Sbjct: 114 AHLG-FRVAVIFGGVKYGAQERALQQGLDILVAAPGRLLDHIQQKNLDLSSTEILVLDEA 172
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
D+MLD+GFI I +IV P RQ + FSAT+ +G +A + KDP+ ++V +
Sbjct: 173 DQMLDLGFIKPIRQIVSRIPAKRQNLFFSATMPTEIGKLAGELLKDPVKVQVTPQSTTVQ 232
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
I+QS++ V+ K LL + D + +VFT TK AD +A L G A +HG
Sbjct: 233 RISQSVVHVEQ-GRKRALLTEMFSDPEYTRCLVFTKTKHGADKVAAYLEAGGVEAGAIHG 291
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ Q R RTL+ ++G++++LVATD+AARGIDV ++HV N++LP PE YVHRIGRT
Sbjct: 292 NKSQPQRERTLDAFKKGKLRVLVATDIAARGIDVDGVSHVVNFELPHVPEAYVHRIGRTA 351
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIP 393
RAG +G A+S V E +K IE+ T+Q+IP
Sbjct: 352 RAGADGTAISFVAGDEMKLLKDIEKVTRQKIP 383
>gi|387889903|ref|YP_006320201.1| ATP-dependent RNA helicase [Escherichia blattae DSM 4481]
gi|414592428|ref|ZP_11442078.1| ATP-dependent RNA helicase RhlE [Escherichia blattae NBRC 105725]
gi|386924736|gb|AFJ47690.1| ATP-dependent RNA helicase [Escherichia blattae DSM 4481]
gi|403196497|dbj|GAB79730.1| ATP-dependent RNA helicase RhlE [Escherichia blattae NBRC 105725]
Length = 455
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 172/408 (42%), Positives = 245/408 (60%), Gaps = 24/408 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+S+GL+ +L+A+ + GY++PT VQ QAIP ++GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFESLGLNPDILRAVAEAGYSEPTPVQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ NN+ + R P R L+LTPTRELA QV +Y
Sbjct: 61 QRLI----------------NNQPHAKGRR----PV--RALILTPTRELAAQVGENVRQY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+ I+++ + GG+ QM L ++L+ATPGRL+D + ++ ++ILVLDE
Sbjct: 99 SSYLN-IRSLVVFGGVSINPQMMKLRGGVDVLIATPGRLLDLEHQNAVSLDSVEILVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI +++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 158 ADRMLDMGFIHDIRRVLAKLPARRQNLLFSATFSDEIKSLAGKLLHNPEEVEVARRNTAS 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ +TQ + FVD K LL YL+ Q +VFT TK A+ +AD+L G AA +H
Sbjct: 218 EQVTQHVHFVDK-KRKRELLSYLIGRDNWEQVLVFTRTKHGANHLADQLKKDGITAAAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G I++LVATD+AARG+D+ + V NY+LP PEDYVHRIGRT
Sbjct: 277 GNKSQGARTRALADFKSGAIRVLVATDIAARGLDIEELPWVVNYELPNVPEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
GRA G A+SLV E ++ IER K++IP I G+EP I+
Sbjct: 337 GRAAATGEALSLVCVDEHKLLRDIERLLKREIPRMAIPGYEPDPSIKA 384
>gi|415836765|ref|ZP_11519063.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli RN587/1]
gi|417282857|ref|ZP_12070155.1| ATP-dependent RNA helicase RhlE [Escherichia coli 3003]
gi|425276656|ref|ZP_18667983.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli
ARS4.2123]
gi|323190923|gb|EFZ76190.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli RN587/1]
gi|386244062|gb|EII85794.1| ATP-dependent RNA helicase RhlE [Escherichia coli 3003]
gi|408206357|gb|EKI31167.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli
ARS4.2123]
Length = 453
Score = 311 bits (797), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 170/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL Y++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSYMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|365891188|ref|ZP_09429640.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. STM 3809]
gi|365332881|emb|CCE02171.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. STM 3809]
Length = 473
Score = 311 bits (797), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 170/395 (43%), Positives = 243/395 (61%), Gaps = 26/395 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F+ L + + +AL + YT PT +Q Q IP A+ GRD+I +QTG+GKTA+F LP LH
Sbjct: 3 SFQDFNLADALTRALKEENYTTPTPIQAQTIPLALQGRDVIGIAQTGTGKTASFALPILH 62
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ + R++ +P R+LVL+PTREL+ Q+ + YG
Sbjct: 63 RLLDN-----------------------RIKPQPKTARVLVLSPTRELSGQILDSFNTYG 99
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+++ ++I GG+P RQ++ + E+L+ATPGRL+D + + SH++ LVLDEA
Sbjct: 100 RHIRMSSTLAI-GGVPMGRQVRAVMPGVEVLVATPGRLLDLVQGNALKLSHVEFLVLDEA 158
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGFINDI KIV P+ RQT+ FSAT+ + +A+++ +DP + V + +
Sbjct: 159 DRMLDMGFINDIRKIVAKLPIKRQTLFFSATMPKDIAELADSMLRDPARVAVTPVSSTVE 218
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
I Q ++ VD K LL LL+++ V +A+VFT TK AD + L +G A +HG
Sbjct: 219 RIAQRVIQVDHSA-KPSLLAQLLKNEPVNRALVFTRTKHGADKVVKGLEKAGIPAQAIHG 277
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ QN R RTL R G I+ LVATD+AARGIDV ++HV N+DLP PE YVHRIGRT
Sbjct: 278 NKSQNHRERTLAAFRTGEIRTLVATDIAARGIDVDGVSHVVNFDLPNVPETYVHRIGRTA 337
Query: 362 RAGRNGFAVSLVNHAERMN-IKKIERFTKQQIPIE 395
RAG +G A+SLV A+ M+ ++ IER TK +P E
Sbjct: 338 RAGADGVAISLVAGADEMSYLRDIERLTKTTLPRE 372
>gi|432860541|ref|ZP_20085680.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE146]
gi|431407525|gb|ELG90736.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE146]
Length = 463
Score = 311 bits (797), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 170/412 (41%), Positives = 243/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITCQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + N+AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKNLAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|424817011|ref|ZP_18242162.1| ATP-dependent RNA helicase RhlE [Escherichia fergusonii ECD227]
gi|325498031|gb|EGC95890.1| ATP-dependent RNA helicase RhlE [Escherichia fergusonii ECD227]
Length = 453
Score = 311 bits (797), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 170/412 (41%), Positives = 243/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + N+AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKNLAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|407785286|ref|ZP_11132434.1| ATP-dependent RNA helicase [Celeribacter baekdonensis B30]
gi|407203318|gb|EKE73305.1| ATP-dependent RNA helicase [Celeribacter baekdonensis B30]
Length = 542
Score = 311 bits (796), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 170/399 (42%), Positives = 234/399 (58%), Gaps = 34/399 (8%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F + L VLKA+ GY PT +Q AIP A+ GRD++ +QTG+GKTA+F+LP
Sbjct: 26 FSDLNLAPKVLKAIEDAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFVLP---- 81
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
+ T R R + PR LVL PTRELA QV + Y
Sbjct: 82 ---------------------MITLLSRGRARARMPRSLVLCPTRELAAQVAENFDTYTK 120
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
YMK KA+ ++GG+ + Q L+ + ++L+ATPGRL+DH GK+ S ++++V+DEAD
Sbjct: 121 YMKLTKAL-LIGGVSFKEQDILIDKGVDVLIATPGRLLDHFERGKLILSDVKVMVVDEAD 179
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLDMGFI DIE+I TP TRQT+ FSAT+ + + P ++V +N
Sbjct: 180 RMLDMGFIPDIERIFGLTPFTRQTLFFSATMAPEIERITNTFLSAPARIEVARQASSGEN 239
Query: 243 ITQSILFVDD------ILHKNRLLDYL--LRDKRVGQAVVFTATKRDADIIADRLNISGF 294
I Q ++ K +LL L L +++ A+VF K D DI++ L G+
Sbjct: 240 IEQHVVMFKASRRDRAASEKRQLLRTLIDLEGEKLDNAIVFCNRKTDVDIVSQSLKKYGY 299
Query: 295 LAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYV 354
AAP+HGDL Q+ RN TLE R G++KILVA+DVAARG+DVP++THVFN+D+P EDYV
Sbjct: 300 DAAPIHGDLEQSQRNATLEGFRGGKLKILVASDVAARGLDVPSVTHVFNFDVPSHAEDYV 359
Query: 355 HRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIP 393
HRIGRTGRAGR+G + L + N +ER ++IP
Sbjct: 360 HRIGRTGRAGRDGKTIMLCEPRDEKNFADVERLIGKEIP 398
>gi|399992257|ref|YP_006572497.1| ATP-dependent RNA helicase RhlE [Phaeobacter gallaeciensis DSM
17395 = CIP 105210]
gi|400753930|ref|YP_006562298.1| ATP-dependent RNA helicase RhlE [Phaeobacter gallaeciensis 2.10]
gi|398653083|gb|AFO87053.1| putative ATP-dependent RNA helicase RhlE [Phaeobacter gallaeciensis
2.10]
gi|398656812|gb|AFO90778.1| putative ATP-dependent RNA helicase RhlE [Phaeobacter gallaeciensis
DSM 17395 = CIP 105210]
Length = 516
Score = 311 bits (796), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 165/399 (41%), Positives = 238/399 (59%), Gaps = 34/399 (8%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F + L+ VLKA+ + GY PT +Q AIP A+ GRD++ +QTG+GKTA+F LP +
Sbjct: 4 FSDLNLNPKVLKAIEEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITL 63
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A R R + PR LVL PTRELA QV + Y
Sbjct: 64 LA-------------------------RGRARARMPRSLVLCPTRELAAQVAENFDTYTK 98
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
++K KA+ ++GG+ + Q L+ + ++L+ATPGRL+DH GK+ S ++++V+DEAD
Sbjct: 99 HLKLTKAL-LIGGVSFKEQDTLIDKGVDVLIATPGRLLDHFERGKLILSDVKVMVVDEAD 157
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLDMGFI DIE+I TP TRQT+ FSAT+ + + P ++V +N
Sbjct: 158 RMLDMGFIPDIERIFGLTPFTRQTLFFSATMAPEIERITNTFLSAPARVEVARQATTSEN 217
Query: 243 ITQSILFVD------DILHKNRLLDYLL--RDKRVGQAVVFTATKRDADIIADRLNISGF 294
ITQ ++ + K +LL +L+ ++ A++F K D DI+A L G+
Sbjct: 218 ITQGVVLFKASRRDREGSEKRKLLRHLIDQEGEKCTNAIIFCNRKTDVDIVAKSLKKYGY 277
Query: 295 LAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYV 354
AAP+HGDL Q+ R +TLE R G ++ LVA+DVAARG+DVP+++HVFN+D+P EDYV
Sbjct: 278 DAAPIHGDLDQSQRTKTLEGFREGSLRFLVASDVAARGLDVPSVSHVFNFDVPSHAEDYV 337
Query: 355 HRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIP 393
HRIGRTGRAGR+G A+ + + N++ IER + +IP
Sbjct: 338 HRIGRTGRAGRDGSAMMICVPKDEKNLEDIERLVQNEIP 376
>gi|386015150|ref|YP_005933429.1| putative ATP-dependent RNA helicase RhlE [Pantoea ananatis AJ13355]
gi|386080118|ref|YP_005993643.1| putative ATP-dependent RNA helicase RhlE [Pantoea ananatis PA13]
gi|327393211|dbj|BAK10633.1| putative ATP-dependent RNA helicase RhlE [Pantoea ananatis AJ13355]
gi|354989299|gb|AER33423.1| putative ATP-dependent RNA helicase RhlE [Pantoea ananatis PA13]
Length = 449
Score = 311 bits (796), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 169/408 (41%), Positives = 246/408 (60%), Gaps = 24/408 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY++PT +Q QAIP +SGRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSADILRAVAEQGYSEPTPIQRQAIPVVLSGRDLLASAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
K +++ + R R +P R L+LTPTRELA QV Y
Sbjct: 61 QKLSANTGAV-------------------RGR-RPV--RALILTPTRELAAQVGENVVEY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+ ++++ + GG+ QM L +IL+ATPGRL+D ++ ++ S +++LVLDE
Sbjct: 99 SKYLP-LRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLVHQNAVDLSQVEVLVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +P ++V
Sbjct: 158 ADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDEIKTLAEKLLHNPEQVEVARRNTAS 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ ++Q + FVD K LL L+ + Q +VFT TK A+ +A++L G AA +H
Sbjct: 218 EQVSQQVHFVDK-KRKRELLSQLIGEGNWQQVLVFTRTKHGANHLAEQLGKDGITAAAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP EDYVHRIGRT
Sbjct: 277 GNKSQGARTRALADFKSGAIRVLVATDIAARGLDIEELPHVVNYELPNVAEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
GRA G A+SLV E ++ IER K++IP + G+EP I+
Sbjct: 337 GRAAATGVALSLVCVDEHKLLRDIERLLKREIPRLAVPGYEPDPSIKA 384
>gi|146310946|ref|YP_001176020.1| ATP-dependent RNA helicase RhlE [Enterobacter sp. 638]
gi|145317822|gb|ABP59969.1| DEAD/DEAH box helicase domain protein [Enterobacter sp. 638]
Length = 462
Score = 311 bits (796), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 244/412 (59%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F ++GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDTLGLNPEILRAVAEQGYLEPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QRLVQNEPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VREYSRYLD-IRSLVVFGGVSINPQMMKLRSGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + ++PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDEIKGLAEKLLRNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ ++Q + FVD K LL ++ + Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVSQYVHFVDK-KRKRELLSQMIGEGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E + IER K++IP I G+E K I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLHDIERLLKKEIPRIAIEGYEVDKSIKA 384
>gi|317488345|ref|ZP_07946905.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
gi|325830722|ref|ZP_08164106.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
gi|316912552|gb|EFV34101.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
gi|325487129|gb|EGC89572.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
Length = 443
Score = 311 bits (796), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 242/412 (58%), Gaps = 28/412 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F+ +GL E L A+ ++G+T PT VQEQAIP + GRD++ ++ TG+GKTAAF LP
Sbjct: 33 TFQDLGLSETTLSAVERMGFTAPTPVQEQAIPLVLEGRDVVAAATTGTGKTAAFALPLFE 92
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ +K +P PR LV++PTRELA Q+ AA +
Sbjct: 93 RIGRAK--------------------------RPGSPRALVVSPTRELAQQIDAACTQLA 126
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+ + ++++GG Y Q+ L R ++L+ATPGRL D M G + +++LVLDEA
Sbjct: 127 KASNR-RMLTVMGGTKYKGQIAKLDRGIDVLVATPGRLYDLMERGVVKLRDVEVLVLDEA 185
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGF ++K+V ATP +RQT+LFSATLD V +I KDP ++V+ +
Sbjct: 186 DRMLDMGFWPTMKKVVAATPSSRQTLLFSATLDRKVMQSVSSILKDPAFVEVSHKGETAD 245
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
I Q ++ V + K LL +L+ + + +VFT TK A+I +L +GF A +H
Sbjct: 246 TIDQFMIPVGP-MKKPELLRLVLQQRGSKRVIVFTDTKTRAEICTGQLKRAGFRADSIHS 304
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
D Q R R LE +G I +LVATDV ARGIDV I +V NYDLP+ PEDYVHRIGRTG
Sbjct: 305 DKTQVQRKRALEGFSKGAIDVLVATDVLARGIDVSNIEYVVNYDLPESPEDYVHRIGRTG 364
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRY 413
RAG G+A+S V+ + + IE+ ++IP I+G++ + + S++
Sbjct: 365 RAGETGYAISFVSPEAKAQLLDIEKLLGERIPTLDIDGYDATEAEKALASQF 416
>gi|104783960|ref|YP_610458.1| DEAD/DEAH box helicase [Pseudomonas entomophila L48]
gi|95112947|emb|CAK17675.1| ATP-dependent RNA helicase RhlE, DEAD box family [Pseudomonas
entomophila L48]
Length = 634
Score = 311 bits (796), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 170/401 (42%), Positives = 248/401 (61%), Gaps = 20/401 (4%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ P + +Q R P QPR+LVLTPTRELA QV + + Y
Sbjct: 61 ERL------FPGGHPDKSQ------------RHGPRQPRVLVLTPTRELAAQVHDSFKVY 102
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
+ I A I GG+ Q+Q +++ ++L+A PGRL+D G ++ S ++ILVLDE
Sbjct: 103 ARDLNFISAC-IFGGVGMNPQVQAMAKGVDVLVACPGRLLDLAGQGSVDLSRVEILVLDE 161
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+D++K++ P RQ +LFSAT + ++A+ + +P ++V
Sbjct: 162 ADRMLDMGFIHDVKKVLARLPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTV 221
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q + + HK LL +L+ Q +VFT TK A+ +A+ L G AA +H
Sbjct: 222 ERIEQRVYRLP-ASHKRALLAHLITLGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIH 280
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ QNAR + L + + +++LVATD+AARG+D+ + HV N++LP EDYVHRIGRT
Sbjct: 281 GNKSQNARTKALADFKANTVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRT 340
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
GRAGR+G A+S+V E +K IER TKQ+IP + GF+
Sbjct: 341 GRAGRSGEAISMVAPDEEKLLKSIERVTKQKIPDGDLMGFD 381
>gi|163746995|ref|ZP_02154351.1| ATP-dependent RNA helicase, putative [Oceanibulbus indolifex
HEL-45]
gi|161379556|gb|EDQ03969.1| ATP-dependent RNA helicase, putative [Oceanibulbus indolifex
HEL-45]
Length = 529
Score = 311 bits (796), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 163/399 (40%), Positives = 239/399 (59%), Gaps = 34/399 (8%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F + L+ VLKA+V+ GY PT +Q AIP A+ GRD++ +QTG+GKTA+F LP L
Sbjct: 4 FTDLNLNAKVLKAVVEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMLSL 63
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A R R + PR LVL PTRELA QV + Y
Sbjct: 64 LA-------------------------RGRARARMPRSLVLCPTRELAAQVAENFDTYSK 98
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
++K KA+ ++GG+ + Q +L+ + ++L+ATPGRL+DH GK+ S ++++V+DEAD
Sbjct: 99 HLKLTKAL-LIGGVSFKEQDKLIDKGVDVLIATPGRLLDHFERGKLILSDVKVMVVDEAD 157
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLDMGFI DIE+I TP TRQT+ FSAT+ + + +P ++V +N
Sbjct: 158 RMLDMGFIPDIERIFGLTPFTRQTLFFSATMAPEIERITNTFLSNPERIEVARQATTSEN 217
Query: 243 ITQSILFVD------DILHKNRLLDYLL--RDKRVGQAVVFTATKRDADIIADRLNISGF 294
ITQ ++ + K +LL L+ ++ A++F K D D +A L G+
Sbjct: 218 ITQGVVMFKASRKDREATEKRKLLRMLIDAEGEKCTNAIIFCNRKMDVDTVAKSLKKHGY 277
Query: 295 LAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYV 354
AAP+HGDL Q+ R +TL+ R G ++ L+A+DVAARG+DVP+++HVFN+D+P EDYV
Sbjct: 278 DAAPIHGDLDQSQRTKTLDGFRNGELRFLIASDVAARGLDVPSVSHVFNFDVPSHAEDYV 337
Query: 355 HRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIP 393
HRIGRTGRAGR+G A+ + + N + +ER +++IP
Sbjct: 338 HRIGRTGRAGRDGKAIMICVPRDEKNFEDVERLVQKEIP 376
>gi|365880479|ref|ZP_09419846.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. ORS 375]
gi|365291464|emb|CCD92377.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. ORS 375]
Length = 481
Score = 311 bits (796), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 170/395 (43%), Positives = 242/395 (61%), Gaps = 26/395 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F+ L + + +AL + YT PT +Q Q IP A+ GRD+I +QTG+GKTA+F LP LH
Sbjct: 3 SFQDFNLADALTRALKEENYTTPTPIQAQTIPLALQGRDVIGIAQTGTGKTASFALPILH 62
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ + R++ +P R+LVL+PTREL+ Q+ + YG
Sbjct: 63 RLL-----------------------ENRIKPQPKTARVLVLSPTRELSGQILDSFNTYG 99
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+++ ++I GG+P RQ++ + E+L+ATPGRL+D + + SH++ LVLDEA
Sbjct: 100 RHIRLSSTLAI-GGVPMGRQVRAVMPGVEVLVATPGRLLDLVQGNALKLSHVEFLVLDEA 158
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGFINDI KIV P+ RQT+ FSAT+ + +A+ + +DP + V + +
Sbjct: 159 DRMLDMGFINDIRKIVAKLPIKRQTLFFSATMPKDIAELADAMLRDPARVAVTPVSSTVE 218
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
I Q ++ VD K LL LL+D+ V +A+VFT TK AD + L +G A +HG
Sbjct: 219 RIAQRVIQVDHSA-KPSLLAQLLKDEPVNRALVFTRTKHGADKVVKGLEKAGIPAQAIHG 277
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ QN R RTL R G I+ LVATD+AARGIDV ++HV N+DLP PE YVHRIGRT
Sbjct: 278 NKSQNHRERTLAAFRTGEIRTLVATDIAARGIDVDGVSHVVNFDLPNVPETYVHRIGRTA 337
Query: 362 RAGRNGFAVSLVNHAERMN-IKKIERFTKQQIPIE 395
RAG +G A+SLV ++ M+ ++ IER TK +P E
Sbjct: 338 RAGADGVAISLVAGSDEMSYLRDIERLTKTTLPRE 372
>gi|409395744|ref|ZP_11246805.1| DEAD/DEAH box helicase [Pseudomonas sp. Chol1]
gi|409119681|gb|EKM96057.1| DEAD/DEAH box helicase [Pseudomonas sp. Chol1]
Length = 593
Score = 311 bits (796), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 171/401 (42%), Positives = 247/401 (61%), Gaps = 20/401 (4%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E + A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ ++ + H + QPR+LVLTPTRELA QV + + Y
Sbjct: 61 ELLFPGGHP------------DREHRHGAK------QPRVLVLTPTRELAAQVHDSFKVY 102
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
+ +K+ I GG+ Q+Q +++ ++L+A PGRL+D N I+ SH++ILVLDE
Sbjct: 103 ARDLP-MKSAVIFGGVGMNPQIQAVAKGLDVLVACPGRLLDLANQKAIDLSHVEILVLDE 161
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+D++K++ P RQ +LFSAT + ++A + DP ++V
Sbjct: 162 ADRMLDMGFIHDVKKVLAKLPAKRQNLLFSATFSKDITDLAGKLLHDPERIEVTPPNTTV 221
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q + + HK LL +L+ Q +VFT TK A+ +A+ L G AA +H
Sbjct: 222 ERIEQRVFHIASS-HKRALLAHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIH 280
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ QNAR + L + + +++ILVATD+AARG+D+ + HV N++LP EDYVHRIGRT
Sbjct: 281 GNKSQNARTKALADFKANQVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRT 340
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
GRAGR+G A+SLV E +K IER TKQ+IP + GF+
Sbjct: 341 GRAGRSGEAISLVAPDEEKLLKGIERLTKQRIPDGDLMGFD 381
>gi|188591276|ref|YP_001795876.1| ATP-dependent RNA helicase hydrolase [Cupriavidus taiwanensis LMG
19424]
gi|170938170|emb|CAP63156.1| ATP-dependent RNA helicase hydrolase [Cupriavidus taiwanensis LMG
19424]
Length = 516
Score = 311 bits (796), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 168/401 (41%), Positives = 245/401 (61%), Gaps = 18/401 (4%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL E +++A+ + GYT PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFSELGLSEKIVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + + + Q ++ R LVLTPTRELA QV + Y
Sbjct: 61 QLLSETAAR----QAGGAQRGGRVAV------------RALVLTPTRELAAQVEESVRNY 104
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y++ ++++ + GG+ Q++ L R EI++ATPGRL+DH++ I+ S +++LVLDE
Sbjct: 105 GKYLR-LRSMVMFGGVGINPQIEQLKRGVEIVVATPGRLLDHVSQRTIDLSQVELLVLDE 163
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI KI++ P RQ +LFSAT + +A+ + +P ++V
Sbjct: 164 ADRMLDMGFIHDIRKILNVLPAKRQNLLFSATFSDDIRALADRLLNNPASIEVARRNTTA 223
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q + VD K LL +L+R Q +VFT TK A+ +A++L G A +H
Sbjct: 224 ETVDQRVYPVDR-ERKRELLAHLVRQHDWHQVLVFTRTKHGANRLAEQLTKDGLSALAIH 282
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + G +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 283 GNKSQSARTRALSEFKAGTLRLLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 342
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
GRAG G A+SLV E ++ IER K+++ V+ GFE
Sbjct: 343 GRAGAEGEAISLVCVDELGLLRDIERLIKRKLEQTVLPGFE 383
>gi|54302911|ref|YP_132904.1| ATP-dependent RNA helicase RhlE [Photobacterium profundum SS9]
gi|46916335|emb|CAG23104.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum
SS9]
Length = 471
Score = 311 bits (796), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 175/415 (42%), Positives = 239/415 (57%), Gaps = 35/415 (8%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ K GY P+ +Q QAIPA I G+D++ ++QTG+GKTAAF LP L
Sbjct: 7 MSFASLGLSAPILEAVTKQGYETPSPIQAQAIPAVIEGKDVMAAAQTGTGKTAAFTLPVL 66
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ ++ R KP Q R LVLTPTRELA QV E
Sbjct: 67 ERLSNGP------------------------RVKPNQVRALVLTPTRELAAQVA---ESV 99
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY K + S + GG+ QM L + ++L+ATPGRL+D N + F +++LVL
Sbjct: 100 ALYAKNLPLSSAVVFGGVKINPQMMRLRQGADVLVATPGRLLDLYNQRAVRFDQIEVLVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI DI K++ A P RQ +LFSAT + +A+ + +P+ + V
Sbjct: 160 DEADRMLDMGFIRDIRKLLAAMPKQRQNLLFSATFSDEIRQLAKGLVNNPVEISVTPRNA 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ Q I VD N LL LL++ GQ +VFT TK A+ + L G AA
Sbjct: 220 TAPTVKQWICPVDKSRKAN-LLTKLLKENNWGQVLVFTKTKHGANRLTTHLEGRGIKAAA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ Q AR + L N + I++LVATD+AARG+D+ + V N++LP EDYVHRIG
Sbjct: 279 IHGNKSQGARTKALANFKSNEIQVLVATDIAARGLDIEQLPQVVNFELPHVAEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE-----PKKRIRT 408
RTGRAG G A+SLV E ++ IER KQ +P E ++GFE P+ R+ T
Sbjct: 339 RTGRAGCEGQAISLVCADEYKDLAAIERLIKQVLPREQVSGFEAVNKLPESRLDT 393
>gi|419952561|ref|ZP_14468708.1| DEAD/DEAH box helicase [Pseudomonas stutzeri TS44]
gi|387970606|gb|EIK54884.1| DEAD/DEAH box helicase [Pseudomonas stutzeri TS44]
Length = 591
Score = 311 bits (796), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 171/401 (42%), Positives = 247/401 (61%), Gaps = 20/401 (4%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E + A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ ++ + H + QPR+LVLTPTRELA QV + + Y
Sbjct: 61 ELLFPGGHP------------DREHRHGAK------QPRVLVLTPTRELAAQVHDSFKVY 102
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
+ +K+ I GG+ Q+Q +++ ++L+A PGRL+D N I+ SH++ILVLDE
Sbjct: 103 ARDLP-LKSAVIFGGVGMNPQIQAVAKGLDVLVACPGRLLDLANQKAIDLSHVEILVLDE 161
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+D++K++ P RQ +LFSAT + ++A + DP ++V
Sbjct: 162 ADRMLDMGFIHDVKKVLAKLPAKRQNLLFSATFSKDITDLAGKLLHDPERIEVTPPNTTV 221
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q + + HK LL +L+ Q +VFT TK A+ +A+ L G AA +H
Sbjct: 222 ERIEQRVFHIA-ASHKRALLAHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIH 280
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ QNAR + L + + +++ILVATD+AARG+D+ + HV N++LP EDYVHRIGRT
Sbjct: 281 GNKSQNARTKALADFKANQVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRT 340
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
GRAGR+G A+SLV E +K IER TKQ+IP + GF+
Sbjct: 341 GRAGRSGEAISLVAPDEEKLLKGIERLTKQRIPDGDLLGFD 381
>gi|423113365|ref|ZP_17101056.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5245]
gi|376388734|gb|EHT01427.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5245]
Length = 454
Score = 311 bits (796), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 245/412 (59%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPEILRAVAEQGYVEPTSIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 H----KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
K +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLIQKEPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ ++++ + GG+ QM L +IL+ATPGRL+D + ++ +++L
Sbjct: 95 VRDYSKYLN-VRSLVVFGGVSINPQMMKLRSGVDILVATPGRLLDLEHQNAVSLDKVEVL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + ++AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKSLAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ ++Q + FVD K LL ++ + Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVSQLVHFVDK-KRKRELLSQMIGEGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E + IER K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLHDIERLLKKEIPRIAIAGYEPDPSIKA 384
>gi|193069347|ref|ZP_03050302.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E110019]
gi|432673792|ref|ZP_19909281.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE142]
gi|192957300|gb|EDV87748.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E110019]
gi|431217166|gb|ELF14746.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE142]
Length = 454
Score = 311 bits (796), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARC 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|386400169|ref|ZP_10084947.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. WSM1253]
gi|385740795|gb|EIG60991.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. WSM1253]
Length = 518
Score = 310 bits (795), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 172/395 (43%), Positives = 240/395 (60%), Gaps = 26/395 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F+ GL E + +AL + Y PT +Q Q IP A++GRD++ +QTG+GKTA+F LP LH
Sbjct: 9 SFQDFGLAEPIARALTEENYVTPTPIQAQTIPTALTGRDVVGIAQTGTGKTASFALPILH 68
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ + R++ +P R+LVL+PTREL+ Q+ + YG
Sbjct: 69 RLL-----------------------ENRIKPQPKTTRVLVLSPTRELSGQILDSFNAYG 105
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+++ ++I GG+P RQ++ L + E+L+ATPGRL+D + S + ++ LVLDEA
Sbjct: 106 RHIRLSSTLAI-GGVPMGRQVRSLMQGVEVLVATPGRLLDLVQSNGLKLGSVEFLVLDEA 164
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGFINDI KIV P+ RQT+ FSAT+ + +A+ + +DP + V + +
Sbjct: 165 DRMLDMGFINDIRKIVAKLPIKRQTLFFSATMPKDIAELADAMLRDPARVAVTPVSSTVE 224
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
I Q I+ VD K LL LL+D+ V +A+VFT TK AD + L +G A+ +HG
Sbjct: 225 RIQQRIIQVD-FSAKPALLAKLLKDEPVNRALVFTRTKHGADKVVKTLEKAGIPASAIHG 283
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ QN R RTL R G I+ LVATD+AARGIDV ITHV N+DLP PE YVHRIGRT
Sbjct: 284 NKSQNHRERTLAQFRTGEIRTLVATDIAARGIDVDGITHVINFDLPNVPETYVHRIGRTA 343
Query: 362 RAGRNGFAVSLVNHAERMN-IKKIERFTKQQIPIE 395
RAG G A+SLV E + ++ IER K +P E
Sbjct: 344 RAGAEGTAISLVAGGEELAYLRDIERLIKVTLPRE 378
>gi|291616785|ref|YP_003519527.1| RhlE [Pantoea ananatis LMG 20103]
gi|291151815|gb|ADD76399.1| RhlE [Pantoea ananatis LMG 20103]
Length = 449
Score = 310 bits (795), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 169/408 (41%), Positives = 246/408 (60%), Gaps = 24/408 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY++PT +Q QAIP +SGRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSADILRAVAEQGYSEPTPIQRQAIPVVLSGRDLLASAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
K +++ + R R +P R L+LTPTRELA QV Y
Sbjct: 61 QKLSANTGAV-------------------RGR-RPV--RALILTPTRELAAQVGENVVEY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+ ++++ + GG+ QM L +IL+ATPGRL+D ++ ++ S +++LVLDE
Sbjct: 99 SKYLP-LRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLVHQNAVDLSQVEVLVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +P ++V
Sbjct: 158 ADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDEIKTLAEKLLHNPEQVEVARRNTAS 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ ++Q + FVD K LL L+ + Q +VFT TK A+ +A++L G AA +H
Sbjct: 218 EQVSQQVHFVDK-KRKRELLSQLIGEGNWQQVLVFTRTKHGANHLAEQLGKDGITAAAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP EDYVHRIGRT
Sbjct: 277 GNKSQGARTRALADFKSGAIRVLVATDIAARGLDIEELPHVVNYELPNVAEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
GRA G A+SLV E ++ IER K++IP + G+EP I+
Sbjct: 337 GRAAATGVALSLVCVDEHKLLRDIERLLKREIPRLAVPGYEPDPSIKA 384
>gi|148239434|ref|YP_001224821.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7803]
gi|147847973|emb|CAK23524.1| Putative ATP-dependent RNA helicase [Synechococcus sp. WH 7803]
Length = 399
Score = 310 bits (795), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 166/390 (42%), Positives = 235/390 (60%), Gaps = 26/390 (6%)
Query: 13 LKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHKFASSKNKIPV 72
++AL GY+ P+ +Q QAIPA I GRD++ ++QTG+GKTA F LP L + K
Sbjct: 1 MEALQAKGYSHPSPIQAQAIPAVIDGRDVMAAAQTGTGKTAGFTLPVLERLRHGK----- 55
Query: 73 MKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGLYMKKIKAISI 132
R AQ R LVLTPTRELA QV + Y ++ +++ +
Sbjct: 56 -------------------RAGRAQIRALVLTPTRELAAQVLENVKAYSRHLP-LRSDVV 95
Query: 133 LGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEADRMLDMGFIND 192
GG+ Q+ L ++L+ATPGRL+D G + F L+ LVLDEADRMLDMGFI+D
Sbjct: 96 FGGVKANPQIDRLRGGVDLLVATPGRLLDLHQQGALRFDQLECLVLDEADRMLDMGFIHD 155
Query: 193 IEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKNITQSILFVDD 252
I +++ P RQT+LFSAT + +A + DP+ L+V + +++ Q ++ D
Sbjct: 156 IRRLIRLMPAKRQTLLFSATFSAPIRKLASGLLHDPVHLQVTPENQTARSVEQ-VVHPCD 214
Query: 253 ILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGDLHQNARNRTL 312
+ K+ LL +L+R Q +VF+ TK A+ +ADRLN G AA +HG+ Q AR R L
Sbjct: 215 MARKSDLLSHLIRTGEWRQVLVFSRTKHGANRVADRLNKEGLAAAAIHGNKSQGARTRAL 274
Query: 313 ENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGFAVSL 372
+ ++G +++LVATD+AARGID+ + HV N DLP EDYVHRIGRTGRAG G AVSL
Sbjct: 275 QGFKQGSVRVLVATDIAARGIDIQQLPHVVNLDLPNVAEDYVHRIGRTGRAGETGHAVSL 334
Query: 373 VNHAERMNIKKIERFTKQQIPIEVINGFEP 402
V E + +K IER T +++ + ++GFEP
Sbjct: 335 VAAEEALLLKAIERLTGEELTRQTVDGFEP 364
>gi|339444298|ref|YP_004710302.1| hypothetical protein EGYY_07040 [Eggerthella sp. YY7918]
gi|338904050|dbj|BAK43901.1| hypothetical protein EGYY_07040 [Eggerthella sp. YY7918]
Length = 510
Score = 310 bits (795), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 169/396 (42%), Positives = 232/396 (58%), Gaps = 33/396 (8%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F +GL E L A+ ++GY +PT VQEQAIP + GRDLI ++ TG+GKTAAF+LP L
Sbjct: 3 HFADLGLSEAALAAVERLGYDQPTPVQEQAIPHVLEGRDLIAAASTGTGKTAAFLLPVL- 61
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ +P R R + PR+LV++PTRELA Q+ R
Sbjct: 62 ------SMLP------------------RARGRNRAPRVLVVSPTRELAQQIA----RTC 93
Query: 122 LYMKKIKA---ISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+ + + ++ GG PY Q++ L ++L+ATPGRL D M G ++ S +Q LVL
Sbjct: 94 MQISRKTGHFTTTVFGGTPYGPQIKELRGGTDVLIATPGRLKDLMKRGVVDLSSVQTLVL 153
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF+ D+ IVDATP RQT+LFSAT+D + ++ +P I+++ +
Sbjct: 154 DEADRMLDMGFLPDVTTIVDATPECRQTLLFSATIDHSIQKNLGSLLTNPAIVEIARNGE 213
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ + Q ++ + + K LL +L +K + +VF TK + AD L SG+
Sbjct: 214 TAETVAQYVMPIAN-RKKPELLHAVLDEKGAERVIVFARTKNRTEECADELRRSGYSVES 272
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+H D Q R R L+N RRG+ ILVATDV ARGIDVP + HV N+DLP PEDYVHRIG
Sbjct: 273 IHSDKSQGQRKRALDNFRRGKTSILVATDVLARGIDVPDVNHVINFDLPDMPEDYVHRIG 332
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
RTGRAG GFA+S V +K IER + IP
Sbjct: 333 RTGRAGEEGFAISFVTSETHRTLKDIERLIGKDIPF 368
>gi|88707113|ref|ZP_01104807.1| ATP-dependent RNA helicase [Congregibacter litoralis KT71]
gi|88698625|gb|EAQ95750.1| ATP-dependent RNA helicase [Congregibacter litoralis KT71]
Length = 423
Score = 310 bits (795), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 165/405 (40%), Positives = 251/405 (61%), Gaps = 26/405 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F ++GL ++KA GY++PT +Q +A+P + G+D++ ++QTG+GKTAAF+LP L
Sbjct: 1 MTFDALGLSPNLVKAANDRGYSQPTPIQTKAVPLVLDGQDVLAAAQTGTGKTAAFVLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ A + R R Q R LVLTPTRELA QV + Y
Sbjct: 61 QRLA--------------------FVGGARGR----QVRTLVLTPTRELASQVHDSVLTY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ +++ + GG+ Q++ L ++L+ATPGRL+D G ++FS L++LVLDE
Sbjct: 97 GRYLD-LRSAVVFGGVRAEPQIEALEPGVDVLVATPGRLLDLAQQGYVDFSALEVLVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+D+ +I++ P+ RQT++FSAT + ++A +P+ + V
Sbjct: 156 ADRMLDMGFIHDMRRIIEMLPINRQTLMFSATFSQEIRSLAARYLVEPVSVDVAPANSTT 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q VD HK+ LL +L R+ GQA+VF TK A+ ++ L +GF AAP+H
Sbjct: 216 ELVEQKAYAVDP-EHKSDLLMHLFREGEWGQALVFCRTKHGANQLSKALLNAGFAAAPIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ QNAR R L+ ++G +++L+ATD+AARG+D+ + V N+DLP P+DYVHRIGRT
Sbjct: 275 GNKSQNARQRALDAFKKGDLQLLIATDLAARGLDIDQLPEVVNFDLPSVPQDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKR 405
GRAG G + SLV+ + ++ IE +++IP+E ++GFEP R
Sbjct: 335 GRAGATGRSHSLVSADDEPLLRAIEVLIRREIPMEHVSGFEPTDR 379
>gi|148258225|ref|YP_001242810.1| ATP-dependent RNA helicase [Bradyrhizobium sp. BTAi1]
gi|146410398|gb|ABQ38904.1| Putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. BTAi1]
Length = 469
Score = 310 bits (795), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 170/395 (43%), Positives = 243/395 (61%), Gaps = 26/395 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F+ L + + +AL + YT PT +Q Q IP A+ GRD+I +QTG+GKTA+F LP LH
Sbjct: 3 SFQDFNLADALTRALKEENYTTPTPIQAQTIPIALQGRDVIGIAQTGTGKTASFALPILH 62
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ + R++ +P R+LVL+PTREL+ Q+ + YG
Sbjct: 63 RLL-----------------------ENRIKPQPKTARVLVLSPTRELSGQILDSFNTYG 99
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+++ A++I GG+P RQ++ L ++L+ATPGRL+D + + + ++ LVLDEA
Sbjct: 100 RHIRLTSALAI-GGVPMGRQVRALMPGVDVLVATPGRLLDLVQGNALKLTQVEFLVLDEA 158
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGFINDI KIV P+ RQT+ FSAT+ + +A+ + +DP + V + +
Sbjct: 159 DRMLDMGFINDIRKIVAKLPIKRQTLFFSATMPKDIAELADAMLRDPARVAVTPVSSTVE 218
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
ITQ ++ VD K LL LL+D+ V +A+VFT TK AD + L +G A +HG
Sbjct: 219 RITQRVIQVDHSA-KPSLLAQLLKDEPVNRALVFTRTKHGADKVVKGLEKAGIPAQAIHG 277
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ QN R RTL R G I+ LVATD+AARGIDV ++HV N+DLP PE YVHRIGRT
Sbjct: 278 NKSQNHRERTLAAFRTGEIRTLVATDIAARGIDVDGVSHVVNFDLPNVPETYVHRIGRTA 337
Query: 362 RAGRNGFAVSLVNHAERMN-IKKIERFTKQQIPIE 395
RAG +G A+SLV A+ ++ ++ IER TK +P E
Sbjct: 338 RAGADGVAISLVAGADELSYLRDIERLTKTTLPRE 372
>gi|336066223|ref|YP_004561081.1| ATP-dependent RNA helicase RhlE [Erysipelothrix rhusiopathiae str.
Fujisawa]
gi|334296169|dbj|BAK32040.1| ATP-dependent RNA helicase RhlE [Erysipelothrix rhusiopathiae str.
Fujisawa]
Length = 475
Score = 310 bits (795), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 166/394 (42%), Positives = 239/394 (60%), Gaps = 24/394 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M FK +G++E +L+AL + GY KPT +QEQAIP + DLI +QTG+GKTAAF +P L
Sbjct: 1 MEFKDLGINEKILQALTEQGYEKPTPIQEQAIPTLLKHNDLIGLAQTGTGKTAAFAVPTL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+K ++N + + R LVLTPTRELA+Q+ E Y
Sbjct: 61 QNLK---------EKAFDRNGKR-------------KIRALVLTPTRELAIQIQENFEMY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G YM +++ + GG+ Q++ L + L+ATPGRL D M+ G I+ S ++I +LDE
Sbjct: 99 GKYMD-LRSTVVFGGVAQRYQVKALRNGVDTLIATPGRLEDLMSQGYIDLSQIEIFILDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFIND+++I+ P +QT+LFSAT+ + ++AE + +P + V +
Sbjct: 158 ADRMLDMGFINDVKRIIKKLPKKKQTLLFSATMPSEISSIAEMLLNNPTTVAVTPVSSTV 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + QS+ +VD +K +LL +L +K +VFT TKR AD +A L S A +H
Sbjct: 218 ETVEQSVYYVDQ-RNKTQLLIDVLENKSFDSVLVFTRTKRGADRVARDLCRSNINAVAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD Q AR R L + G I ++VATD+AARGID+ + +V NY+LP+ PE YVHRIGRT
Sbjct: 277 GDKSQGARQRALSGFKEGTINVMVATDIAARGIDINELKYVVNYELPEVPETYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
GRAG +G A+S N E +K IE + ++P+
Sbjct: 337 GRAGFSGAAISFCNFEEIPLLKDIEHVIQMRVPV 370
>gi|393777345|ref|ZP_10365637.1| ATP-dependent RNA helicase hydrolase [Ralstonia sp. PBA]
gi|392715686|gb|EIZ03268.1| ATP-dependent RNA helicase hydrolase [Ralstonia sp. PBA]
Length = 516
Score = 310 bits (795), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 172/406 (42%), Positives = 248/406 (61%), Gaps = 23/406 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL + +++A+ ++GYT PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFSELGLSDKLVRAVTELGYTVPTPIQRQAIPAVLGGGDLLAGAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + + Q N+ RL PR LVLTPTRELA QV + Y
Sbjct: 61 QRLSGTAAA---------QAGNR------RL------PRALVLTPTRELAAQVEESVRDY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ ++++ + GG+ Q+ LL + +I++ATPGRL+DH I+ S+++ILVLDE
Sbjct: 100 GKYLP-LRSMVMFGGVGINPQVDLLRKGVDIVVATPGRLLDHAGQRTIDLSNIEILVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI K++ P RQ +LFSAT + +A+ + P+ ++V
Sbjct: 159 ADRMLDMGFIHDIRKVLALLPQKRQNLLFSATFSDEIRALADKLLDQPVSIEVARRNTTA 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I VD K LL +L++ Q +VFT TK A+ +A++L+ G A +H
Sbjct: 219 ETVAQRIYPVDR-ERKRELLAHLVKTHDWHQVLVFTRTKHGANRLAEQLSKDGIPALAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + G +++LVATD+AARGID+ + HV N+DLP EDYVHRIGRT
Sbjct: 278 GNKSQSARTRALSEFKGGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVSEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
GRAG G A+SLV E ++ IER K+++P V+ GFEP I
Sbjct: 338 GRAGAEGEAISLVCIDEHGLLRDIERLIKRELPRTVLPGFEPDPTI 383
>gi|372271032|ref|ZP_09507080.1| DEAD/DEAH box helicase [Marinobacterium stanieri S30]
Length = 433
Score = 310 bits (795), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 170/402 (42%), Positives = 245/402 (60%), Gaps = 26/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL + +LKA+ GY P+ +Q+QAIPA + GRD++ ++QTG+GKTA F LP L
Sbjct: 1 MSFASLGLSDAILKAISDQGYDTPSPIQQQAIPAVLEGRDVMAAAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + + R K Q R+L+LTPTRELA QV + Y
Sbjct: 61 ERLSKGE------------------------RAKANQARVLILTPTRELAAQVADSVATY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G +++ +K+ + GG+ QM L + +IL+ATPGRL+D + + F +L+ LVLDE
Sbjct: 97 GKHLQ-LKSAVVFGGVKINPQMMALRKGADILIATPGRLLDLHSQNAVRFDNLEALVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++I+ P RQ +LFSAT + +A+ + DP+ + V
Sbjct: 156 ADRMLDMGFIHDIKRILRLLPSKRQNLLFSATFSKDIRELAKGLVNDPVEVSVTPRNSTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I VD K+ LL L++D Q +VFT TK A+ +A +L+ + AA +H
Sbjct: 216 ETVKQWIAPVDK-KRKSPLLIKLIKDNSWYQVLVFTRTKHGANRLATQLDKANIKAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + L + I++LVATD+AARG+D+ + V N+DLP EDYVHRIGRT
Sbjct: 275 GNKSQGARTKALNAFKTKDIQVLVATDIAARGLDIDLLPQVVNFDLPNVAEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG +G AVSLV+ E ++ IER T + IP E+I+GFEP
Sbjct: 335 GRAGADGQAVSLVSADEIDQLRAIERLTSKIIPREMIDGFEP 376
>gi|145298914|ref|YP_001141755.1| ATP-dependent RNA helicase RhlE [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418361067|ref|ZP_12961724.1| ATP-dependent RNA helicase RhlE [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|142851686|gb|ABO90007.1| ATP-dependent RNA helicase RhlE [Aeromonas salmonicida subsp.
salmonicida A449]
gi|356687652|gb|EHI52232.1| ATP-dependent RNA helicase RhlE [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 467
Score = 310 bits (795), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 172/404 (42%), Positives = 239/404 (59%), Gaps = 25/404 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +L+A+ + GY P+ +Q QAIPA ++GRDL+ ++QTG+GKTA F LP L
Sbjct: 1 MSFSSLGLAEPLLRAVAEQGYDTPSPIQLQAIPAVLAGRDLMAAAQTGTGKTAGFTLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ SK K+ P + R LVLTPTRELA QV + Y
Sbjct: 61 QRLMESKRKV-----------------------SPNRIRALVLTPTRELAAQVGESVRNY 97
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +++ + GG+ QM R ++L+A PGRL+D N + F ++ILVLDE
Sbjct: 98 GKHLP-MRSHVVFGGVSINPQMMATRRGLDVLVACPGRLMDLYNQNAVKFDEVEILVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ +LFSAT + +A + +P +++V
Sbjct: 157 ADRMLDMGFIRDIRKILALMPKQRQNLLFSATFAEEIRELATGLLNNPAVIEVAPRNSTA 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q ++ D +K LL +L+ Q +VFT TK A+ +A+ L+ +G AA +H
Sbjct: 217 ERIEQ-LVHPCDKANKIGLLSHLVTSNDWQQVLVFTRTKHMANRVAETLDKNGVSAAAIH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + G +K+LVATD+AARG+D+ + V N++LP EDYVHRIGRT
Sbjct: 276 GNKSQGARTRALAGFKDGNVKVLVATDIAARGLDIDKLPQVVNFELPNVAEDYVHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRAG G A+SLV E IK IER TKQ IP E + GFE +
Sbjct: 336 GRAGAAGHAISLVAADEGKLIKAIERLTKQNIPCEQVAGFEASR 379
>gi|388568067|ref|ZP_10154491.1| DEAD/DEAH box helicase domain-containing protein [Hydrogenophaga
sp. PBC]
gi|388264699|gb|EIK90265.1| DEAD/DEAH box helicase domain-containing protein [Hydrogenophaga
sp. PBC]
Length = 588
Score = 310 bits (795), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 172/403 (42%), Positives = 248/403 (61%), Gaps = 22/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+ + L +++A+ + GY PT +Q +A+PA ++GRDL+ +QTG+GKTAAF LP L
Sbjct: 1 MTFEELNLAPAIVQAVHEHGYHTPTPIQVEAVPAVLAGRDLLAGAQTGTGKTAAFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + + + + RF R LVLTPTRELA QV + Y
Sbjct: 61 QRLSQGQ--------------------RPKNRFGGIGIRALVLTPTRELAAQVEESVRVY 100
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ + + + GG+ Q+ + R +IL+ATPGRL+D G ++ S++QILVLDE
Sbjct: 101 GKHVD-LSSTVVFGGVGMNPQIDAMKRGVDILVATPGRLLDLQQQGFLDLSNVQILVLDE 159
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+D++K++ P ++Q++LFSAT + ++A+ + KDP ++V
Sbjct: 160 ADRMLDMGFIHDVKKVLALLPQSKQSLLFSATFSDEIRDLAQGLLKDPQHIQVTPRNTTV 219
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ ITQ I V K LL Y+++ Q +VFT TK A+ +AD LN +G A LH
Sbjct: 220 QRITQVIHPVGR-GKKKALLVYIIQLHNWSQVLVFTRTKFGANNVADYLNKNGITAMALH 278
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + L + G I+ LVATD+AARGID+ + HV NYD+P EDYVHRIGRT
Sbjct: 279 GNKSQGARTQALAGFKSGEIRALVATDIAARGIDIDELPHVVNYDIPNICEDYVHRIGRT 338
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPK 403
GRAGR G AV+LV+ E + +IERFTKQQIP+E+ + P+
Sbjct: 339 GRAGREGQAVNLVSLDEEGFMMEIERFTKQQIPVEMFAEYMPE 381
>gi|422970694|ref|ZP_16974206.1| ATP-dependent RNA helicase rhlE [Escherichia coli TA124]
gi|371600132|gb|EHN88909.1| ATP-dependent RNA helicase rhlE [Escherichia coli TA124]
Length = 454
Score = 310 bits (794), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 170/412 (41%), Positives = 243/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ PV RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPVKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|443472223|ref|ZP_21062252.1| ATP-dependent RNA helicase RhlE [Pseudomonas pseudoalcaligenes
KF707]
gi|442902565|gb|ELS28081.1| ATP-dependent RNA helicase RhlE [Pseudomonas pseudoalcaligenes
KF707]
Length = 652
Score = 310 bits (794), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 176/404 (43%), Positives = 246/404 (60%), Gaps = 24/404 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E ++ A+ GY +PT VQ++AIPA + GRDL+V++QTG+GKTA F LP L
Sbjct: 1 MSFASLGLSEALVGAVEAAGYAQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTAGFALPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
P + +Q R P Q R+LVLTPTRELA QV + +
Sbjct: 61 ELL------FPDGHPDKSQ------------RHGPRQARVLVLTPTRELAAQVH---DSF 99
Query: 121 GLYMKKIK--AISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY + + + I GG+ Q+Q LS+ ++L+A PGRL+D G ++ SH++ILVL
Sbjct: 100 RLYARDLSLNSACIFGGVGMNPQIQALSKGVDLLVACPGRLLDLAGQGNVDLSHVEILVL 159
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI+D++K++ P RQ +LFSAT + +A + DP ++V
Sbjct: 160 DEADRMLDMGFIHDVKKVLARLPAKRQNLLFSATFSKDIVELANKLLHDPERIEVTPPNT 219
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ I Q + F HK LL +L+ Q +VFT TK A+ +A+ L G AA
Sbjct: 220 TVERIEQRV-FRLPASHKRALLAHLITLGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAA 278
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ QNAR + L + + ++ILVATD+AARG+D+ + HV N++LP EDYVHRIG
Sbjct: 279 IHGNKSQNARTKALADFKANEVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIG 338
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
RTGRAGR+G A+SLV E +K IER TKQ+IP + GF+P
Sbjct: 339 RTGRAGRSGEAISLVAPDEDKLLKAIERLTKQKIPDGDMLGFDP 382
>gi|417690323|ref|ZP_12339547.1| putative ATP-dependent RNA helicase rhlE [Shigella boydii 5216-82]
gi|332088993|gb|EGI94105.1| putative ATP-dependent RNA helicase rhlE [Shigella boydii 5216-82]
Length = 441
Score = 310 bits (794), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 170/412 (41%), Positives = 243/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSATL + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATLSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|149278660|ref|ZP_01884796.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39]
gi|149230655|gb|EDM36038.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39]
Length = 435
Score = 310 bits (794), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 174/396 (43%), Positives = 237/396 (59%), Gaps = 26/396 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+ + L E +LKAL GYT+PT +QEQ+IP ++ RDL+ +QTG+GKTAAF +P L
Sbjct: 1 MLFEELNLIEPILKALQTEGYTQPTPIQEQSIPTILTSRDLLGCAQTGTGKTAAFAIPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP-RMLVLTPTRELALQVTAATER 119
+KE K +P R LVLTPTRELA+Q+ + +
Sbjct: 61 QLL-----------------------NKEHQNAKGPRPIRALVLTPTRELAIQIEESFKA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
YG + ++ + I GG+ Q L R +IL+ATPGRL+D MN G IN ++I VLD
Sbjct: 98 YGRNLS-LRHLVIFGGVGQKAQTDALHRGVDILIATPGRLLDLMNQGFINLKDIEIFVLD 156
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+D++K + P RQT+ FSAT+ + +A I DPL ++V +
Sbjct: 157 EADRMLDMGFIHDVKKTIAKLPAKRQTLFFSATMPPEIQKLANTILVDPLKVEVTPVSST 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+ I Q I FV+ KN LL ++L+DK + A+VFT TK AD + L G A +
Sbjct: 217 AEKIEQMIYFVEKGDKKN-LLIHILQDKTIQTALVFTRTKHGADRVVKDLIKVGVKAEAI 275
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HG+ QNAR R L N + +ILVATD+AARGIDV +THV NY+LP PE YVHRIGR
Sbjct: 276 HGNKSQNARQRALTNFKAKTTRILVATDIAARGIDVDELTHVINYELPNIPETYVHRIGR 335
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIE 395
TGRAG +G + S + E+ + IE+ +IP++
Sbjct: 336 TGRAGNSGISFSFCDGEEKEFLDDIEKLIALKIPVQ 371
>gi|307130576|ref|YP_003882592.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
gi|306528105|gb|ADM98035.1| Putative ATP-dependent RNA helicase [Dickeya dadantii 3937]
Length = 454
Score = 310 bits (794), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 173/412 (41%), Positives = 246/412 (59%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+S+GL +L+A+ + GY +PT VQ QAIP + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFESLGLSADILRAVEEQGYREPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 H----KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ + +K + PV R L+LTPTRELA Q+
Sbjct: 61 QLLNGRPSQAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
+ Y Y++ ++++ + GG+ QM L +IL+ATPGRL+D + ++ SH++IL
Sbjct: 95 VQAYSKYLR-LRSLVVFGGVSINPQMMKLRGGVDILIATPGRLLDLEHQNAVDLSHVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +A + +P ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPPKRQNLLFSATFSDEIKELAGKLLTNPASVEVVRR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL +L+ Q +VFT TK A+ +A++LN G A
Sbjct: 214 NTPSELVTQHVHFVDK-KRKRELLSHLIGKHDWRQVLVFTRTKHGANHLAEQLNKDGITA 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L N + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALANFKDGDIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IER K++IP I G+EP I+
Sbjct: 333 IGRTGRAASTGEALSLVCVDEHKLLRDIERLLKREIPRMEIAGYEPDPTIKA 384
>gi|299132277|ref|ZP_07025472.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
gi|298592414|gb|EFI52614.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
Length = 509
Score = 310 bits (794), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 170/394 (43%), Positives = 241/394 (61%), Gaps = 25/394 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F+ GL + + +AL + Y PT +Q Q IP AI+GRD++ +QTG+GKTA+F LP LH
Sbjct: 3 SFQDFGLADPISRALREENYVTPTPIQAQTIPIAITGRDVVGIAQTGTGKTASFALPILH 62
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ + R+R +P R+LVL+PTREL+ Q+ + YG
Sbjct: 63 RLL-----------------------ENRVRPQPKTCRVLVLSPTRELSGQILDSFNAYG 99
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+++ A++I GG+P RQ++ + + E+L+ATPGRL+D + + + ++ LVLDEA
Sbjct: 100 RHLRLSAALAI-GGVPMGRQVRAMMQGVEVLVATPGRLLDLVQGNAVRLNQVEFLVLDEA 158
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGFINDI KIV PV RQT+ FSAT+ + +AE++ +DP + V + +
Sbjct: 159 DRMLDMGFINDIRKIVAKLPVKRQTLFFSATMPKDIAELAEHMLRDPARVAVTPVSSTAE 218
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
ITQ I+ +D K L LL+ + V +A+VFT TK AD + L +G + +HG
Sbjct: 219 RITQRIIQLDHSA-KPATLSELLKSEPVNRALVFTRTKHGADKVVRGLVKAGIPSEAIHG 277
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ QN R R L + R G I+ LVATD+AARGIDV ITHVFN+DLP PE YVHRIGRT
Sbjct: 278 NKSQNHRERVLASFRNGDIRTLVATDIAARGIDVDGITHVFNFDLPNIPETYVHRIGRTA 337
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIE 395
RAG +G A+SLV E ++ IER + +P E
Sbjct: 338 RAGADGTAISLVAGEENTYLRDIERLIRVTLPRE 371
>gi|90577494|ref|ZP_01233305.1| putative ATP-dependent RNA helicase RhlE [Photobacterium angustum
S14]
gi|90440580|gb|EAS65760.1| putative ATP-dependent RNA helicase RhlE [Photobacterium angustum
S14]
Length = 497
Score = 310 bits (794), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 169/402 (42%), Positives = 241/402 (59%), Gaps = 26/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ K GY KP+ +QEQAIPA ++G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MSFASLGLSAPILEAVAKQGYEKPSPIQEQAIPAILAGKDVMAAAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ A+ + P ++ R LVLTPTRELA QV + Y
Sbjct: 61 ERLANGR---PARSNHV---------------------RALVLTPTRELAAQVGESVATY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ A+ + GG+ QM + + ++L+ATPGRL+D + + F ++ILVLDE
Sbjct: 97 GKNLRLSSAV-VFGGVKVNPQMLRMRKGADVLVATPGRLMDLHSQNAVKFRDVEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ +LFSAT + +A+ + +P+ + VN +
Sbjct: 156 ADRMLDMGFIRDIRKILALLPKERQNLLFSATFSDEIRELAKGLVNNPVEIDVNPRNQTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I VD N LL LL ++ Q +VFT TK A+ +A L G AA +H
Sbjct: 216 RTVKQWICPVDQKKKPN-LLTKLLNERNWKQVLVFTKTKHGANKLATHLESRGVSAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + L N + G +++LVATD+AARG+D+ + V N+DLP EDYVHRIGRT
Sbjct: 275 GNKSQGARTKALANFKSGDVRVLVATDIAARGLDIDQLPQVVNFDLPHVAEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G A+SLV+ E ++ IER T+Q E+I GF+P
Sbjct: 335 GRAGCVGEAISLVSAEEAKDLAAIERLTQQVFDREIIEGFKP 376
>gi|119946865|ref|YP_944545.1| ATP-dependent RNA helicase [Psychromonas ingrahamii 37]
gi|119865469|gb|ABM04946.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
ingrahamii 37]
Length = 429
Score = 310 bits (794), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 171/402 (42%), Positives = 246/402 (61%), Gaps = 26/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL + +LKA+ + GYT+P+ +Q QAIPA + G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MSFDLLGLPDSLLKAVKEQGYTEPSPIQAQAIPAILEGKDVMAAAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
L + N R KP Q R LVLTPTRELA QV A+ Y
Sbjct: 61 ---------------TLLEKGN---------RPKPNQVRALVLTPTRELAAQVHASVATY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G M +++ + GG+ QMQ+L + ++L+ATPGRLID N ++F L++L+LDE
Sbjct: 97 GKNMP-LRSAVVFGGVKINPQMQILRQGVDVLVATPGRLIDLYNQNAVSFKQLEVLILDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++I+ P RQ +LFSAT + +A+ + +P+ + V+
Sbjct: 156 ADRMLDMGFIHDIKRILAVLPKQRQNLLFSATFSPDIRRLAKGLVNNPVEISVSPRNTTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+N+TQ++ VD K+ +L L++ Q +VF TK A+ + L G AA +H
Sbjct: 216 ENVTQTVYEVDKT-KKSIVLSTLIKQNDWQQVLVFVKTKHGANRLVKSLEGRGITAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + G+++ LVATD+AARGID+ + V N+DLP EDYVHRIGRT
Sbjct: 275 GNKSQAARTRALAGFKEGQVRALVATDIAARGIDIDQLPQVVNFDLPHVSEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G A+SLV + E +K IE+ K+ IP +++ GFEP
Sbjct: 335 GRAGNEGQALSLVCNEEFKLLKDIEKLIKKVIPRKILAGFEP 376
>gi|332293596|ref|YP_004432205.1| DEAD/DEAH box helicase domain protein [Krokinobacter sp. 4H-3-7-5]
gi|332171682|gb|AEE20937.1| DEAD/DEAH box helicase domain protein [Krokinobacter sp. 4H-3-7-5]
Length = 427
Score = 310 bits (794), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 165/402 (41%), Positives = 247/402 (61%), Gaps = 26/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+FKS+GL + +LKA+ + GYT P+ +Q++AIP + G+D++ S+QTG+GKTA F LP +
Sbjct: 1 MSFKSLGLSDALLKAVSEKGYTTPSPIQQKAIPVVLQGKDVLASAQTGTGKTAGFTLPMI 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ + N Q KI R LVLTPTRELA Q+ Y
Sbjct: 61 HRLIN----------NPKQGRRKI--------------RALVLTPTRELAAQIQENVLEY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+ IK++ I GG+ Q++ L + +IL+ATPGRL+D N G ++ S ++ LVLDE
Sbjct: 97 SKYVD-IKSMVIFGGVNQNPQVRTLRQGVDILVATPGRLLDLQNQGLLSLSDVEFLVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI+K++ P RQ +LFSAT + + A +I +P++++
Sbjct: 156 ADRMLDMGFIHDIKKVLKMVPAKRQNLLFSATFNTDIKKFASSILTNPVLVEATPENTTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q VD K +L +R+ Q +VFT TK A+ ++ +L G +A +H
Sbjct: 216 EKVDQKSYRVDKS-RKTEMLIKFIREGNWDQVLVFTRTKHGANRLSQKLEKDGISSAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ QNAR + L + G++++LVATD+AARG+D+P + +V NY+LP PEDYVHRIGRT
Sbjct: 275 GNKTQNARVKALAGFKSGKVRVLVATDIAARGLDIPLLPYVINYELPNVPEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG +G A+SLV E ++ IE+ +++ EV+ GF+P
Sbjct: 335 GRAGASGQAISLVGVDEVDYVRGIEKLLGEKLHSEVLEGFQP 376
>gi|348030348|ref|YP_004873034.1| DEAD/DEAH box helicase [Glaciecola nitratireducens FR1064]
gi|347947691|gb|AEP31041.1| DEAD box helicase [Glaciecola nitratireducens FR1064]
Length = 421
Score = 310 bits (794), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 168/406 (41%), Positives = 241/406 (59%), Gaps = 26/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+FKS+GL LVL+A+ + GY +P+ +QEQ IP + G+D++ ++QTG+GKTAAF LP L
Sbjct: 1 MSFKSLGLSSLVLQAVEEKGYKQPSPIQEQGIPVVLEGKDIMAAAQTGTGKTAAFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
F ++K P N+ + L+LTPTRELA Q+ Y
Sbjct: 61 SMFENTK---PASANNV---------------------KALILTPTRELAAQIDENIRYY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +K + GG+ QM L R ++L+ATPGRL+D + FS L+ILVLDE
Sbjct: 97 GKHLN-LKTQVVFGGVGINPQMIKLRRGVDVLVATPGRLMDLYQQKAVKFSELEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI+KI+ P RQ +LFSAT + +A+ I +P+ + VN
Sbjct: 156 ADRMLDMGFIHDIKKIMALLPKKRQNLLFSATFSDDIRKLAKTIVNNPVEISVNPKNSTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
K + Q I+ VD KN+LL +L+++ Q +VF TK AD +A L A+ +H
Sbjct: 216 KAVEQVIIPVDKT-SKNKLLSHLIKENNWHQVLVFCRTKHGADRLAKFLIKQNITASAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G +++L ATD+AARGID+ + + N+DLP EDYVHRIGRT
Sbjct: 275 GNKSQGARTRALADFKSGGVQVLAATDIAARGIDISELPQIVNFDLPNIAEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
GRAG G A S ++ NI +I+ + I E+I GFEP +++
Sbjct: 335 GRAGATGHAYSFATIEDKKNISEIQSLIGEVIATEIIKGFEPTEKL 380
>gi|157160272|ref|YP_001457590.1| ATP-dependent RNA helicase RhlE [Escherichia coli HS]
gi|157065952|gb|ABV05207.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli HS]
Length = 454
Score = 310 bits (794), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 170/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL +KV
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIKVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|366160940|ref|ZP_09460802.1| ATP-dependent RNA helicase RhlE [Escherichia sp. TW09308]
gi|432371534|ref|ZP_19614587.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE11]
gi|430898972|gb|ELC21078.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE11]
Length = 454
Score = 310 bits (794), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 243/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
S +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLISREPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDEIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP + G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAVPGYEPDPSIKA 384
>gi|288959329|ref|YP_003449670.1| DEAD-box ATP-dependent RNA helicase [Azospirillum sp. B510]
gi|288911637|dbj|BAI73126.1| DEAD-box ATP-dependent RNA helicase [Azospirillum sp. B510]
Length = 512
Score = 310 bits (794), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 172/399 (43%), Positives = 243/399 (60%), Gaps = 25/399 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F +GL E +L+A+ + GY+ T +Q AIP ++GRD++ +QTG+GKTAAF LP L
Sbjct: 10 EFSGLGLIEPLLRAVAEEGYSTATPIQAGAIPLLLAGRDVLGLAQTGTGKTAAFTLPILQ 69
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ ++ +K+R+ K PR+L+LTPTRELALQ+ + YG
Sbjct: 70 R---------------------LFQNKKRVAAK--SPRVLILTPTRELALQIGDSFTTYG 106
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
++ I+ I GG+ Q+ ++R E+L+ATPGRL+D M +N +++ VLDEA
Sbjct: 107 RHLP-IRRTVIHGGVGQSPQVAAIARGVEVLIATPGRLLDLMAQNHVNLGAIEVFVLDEA 165
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGFI D+ K+V P RQT+LFSAT+ V ++A +I D ++V +
Sbjct: 166 DRMLDMGFIRDVRKVVAVLPKERQTLLFSATMPDAVVDLANSILTDAERIEVTPQSTTVE 225
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
I Q +LFV+ K RLL LL D+ + + +VF TK AD IAD L +G A +HG
Sbjct: 226 RINQRVLFVER-GDKRRLLADLLEDEAMARTIVFARTKHGADRIADHLKKAGITADAIHG 284
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
D Q+AR R LE+ R G ++ LVATD+AARGID+ I+HV N+DLP PE YVHRIGRT
Sbjct: 285 DKSQSARVRALESFRNGELRALVATDIAARGIDIDGISHVINFDLPNEPESYVHRIGRTA 344
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGF 400
RAG +G AVS +H E +K IE+ +Q IP + + +
Sbjct: 345 RAGTDGSAVSFCDHEEVGYLKDIEKTIRQPIPADASHPY 383
>gi|253990397|ref|YP_003041753.1| putative atp-dependent rna helicase rhle [Photorhabdus asymbiotica]
gi|253781847|emb|CAQ85010.1| putative atp-dependent rna helicase rhle [Photorhabdus asymbiotica]
Length = 444
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 170/408 (41%), Positives = 248/408 (60%), Gaps = 24/408 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+S+GL +L A+ + GY+ PT +Q+QAIP ++G+DL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFESLGLDADILCAIEEQGYSAPTPIQQQAIPVVLAGKDLLASAQTGTGKTAGFTLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
NN+ + T R P R L+LTPTRELA QV Y
Sbjct: 61 QLL----------------NNSPVQTKGRR----PV--RALILTPTRELAAQVGENVRNY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y++ ++++ + GG+ QM L +IL+ATPGRL+D + ++ S ++ILVLDE
Sbjct: 99 SKYLR-LRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVDLSRVEILVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI ++++ P RQ +LFSAT + N+A + +P+ ++V
Sbjct: 158 ADRMLDMGFIHDIRRVLNKLPPKRQNLLFSATFSDEIKNLASKLLHNPVSVEVARRNSAS 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q + FVD K LL +L+ + Q +VFT TK A+ +A++LN G A+ +H
Sbjct: 218 EQIEQFVHFVDK-KRKGELLSFLIGSRNWQQVLVFTRTKHGANRLAEQLNKDGVTASAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + GRI++LVATD+AARG+D+ + +V N++LP EDYVHRIGRT
Sbjct: 277 GNKSQGARTRALADFKEGRIRVLVATDIAARGLDIDQLPYVVNFELPNVSEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
GRA G A+SLV E +K IER K++IP I G++P I+
Sbjct: 337 GRADATGQALSLVCVDEHKLLKDIERLLKREIPRVAIPGYDPDPTIKA 384
>gi|432849252|ref|ZP_20080474.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE144]
gi|431401252|gb|ELG84596.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE144]
Length = 454
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 170/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
S +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLISRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|422923013|ref|ZP_16956180.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae BJG-01]
gi|341644564|gb|EGS68762.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae BJG-01]
Length = 464
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 170/406 (41%), Positives = 241/406 (59%), Gaps = 26/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S+GL +LKA+ + GY P+ +Q QAIPA ++G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
A K P ++ N Q R L+LTPTRELA Q+ Y
Sbjct: 61 ELLA----KGPKVRAN--------------------QVRALILTPTRELAAQIQDNVMLY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +K+ + GG+ QMQ + + +IL+ATPGRL+D N + F L+ILVLDE
Sbjct: 97 GRHLP-LKSAVVFGGVKINPQMQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ +LFSAT + +A+ + +P+ + V+
Sbjct: 156 ADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I + D+ K +L L+++ Q +VF TK A+ +A LN G AA +H
Sbjct: 216 RTVEQCI-YPADVKKKQAMLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G ++ILVATD+AARGID+P + V N++LPK EDYVHRIGRT
Sbjct: 275 GNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
GRAG G A+SLV+ E + IER T+ +P + GFEP ++
Sbjct: 335 GRAGEVGKAISLVSAIEAPELFAIERLTQALLPRVNLAGFEPTNQL 380
>gi|119510127|ref|ZP_01629266.1| DEAD/DEAH box helicase-like protein [Nodularia spumigena CCY9414]
gi|119465188|gb|EAW46086.1| DEAD/DEAH box helicase-like protein [Nodularia spumigena CCY9414]
Length = 437
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 170/401 (42%), Positives = 244/401 (60%), Gaps = 22/401 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F ++GL +++A+ + GYT+PT +Q QAIPA +SG DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFSTLGLSHEIIRAVTEQGYTEPTPIQMQAIPAVLSGSDLLAGAQTGTGKTAGFTLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ +S KN K +H + P R L+LTPTRELA QV ++ Y
Sbjct: 61 HRLSSDKNV-------------KSTSHG----YSPI--RALILTPTRELAAQVESSVRDY 101
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRN-PEILLATPGRLIDHMNSGKINFSHLQILVLD 179
G Y+K + ++ + GG+ Q +LL +IL++TPGRL+DH+ G +N SH++ILVLD
Sbjct: 102 GKYLK-LNSMVMFGGVSINPQKRLLKEGRVDILVSTPGRLLDHVQQGTVNLSHIEILVLD 160
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI DI +I+ P RQ +LF AT + +A + P +++V
Sbjct: 161 EADRMLDMGFIRDIRRILSLLPKQRQNLLFFATFSEKIKALAAGLLNRPKMIEVARRNVT 220
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+TQ + VD K +LL +L+R Q +VFT TK AD + +L A +
Sbjct: 221 ADTVTQKVYKVDRD-KKRQLLAHLIRQDNWYQVLVFTRTKYGADRLVKQLGEERIQALAI 279
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HG+ Q++R TL + +++LVATD+AARG+D+ + HV N+DLP EDYVHRIGR
Sbjct: 280 HGNKSQSSRTHTLAKFKNNSLQVLVATDIAARGLDISELPHVVNFDLPNVAEDYVHRIGR 339
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGF 400
TGRAG +G A+SLV+ E + IE+ Q++P EV+ GF
Sbjct: 340 TGRAGASGEAISLVSADEYHLLADIEKLIAQRLPFEVVAGF 380
>gi|440288419|ref|YP_007341184.1| DNA/RNA helicase, superfamily II [Enterobacteriaceae bacterium
strain FGI 57]
gi|440047941|gb|AGB78999.1| DNA/RNA helicase, superfamily II [Enterobacteriaceae bacterium
strain FGI 57]
Length = 463
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 244/412 (59%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+V++GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPEILRAIVELGYREPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITTQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VREYSQYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDGIEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL ++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSQMIGQGDWRQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP + G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIALPGYEPDPSIKA 384
>gi|393722521|ref|ZP_10342448.1| ATP-dependent RNA helicase [Sphingomonas sp. PAMC 26605]
Length = 426
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 166/395 (42%), Positives = 235/395 (59%), Gaps = 25/395 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F + L +L+AL + GYT PT +Q Q+IP + GRD++ +QTG+GKTAAF LP LH
Sbjct: 4 TFADLALAPRLLRALDEQGYTTPTPIQAQSIPLLLEGRDMLGMAQTGTGKTAAFALPLLH 63
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ A+ N P K R+LVL PTREL Q+ A E +G
Sbjct: 64 RLAA--NPRPAPKHGA---------------------RVLVLAPTRELVSQIAAGFESFG 100
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+M ++ +I GG+ Q+ L +I++A PGRL+D + G + S L+ LVLDEA
Sbjct: 101 RHMP-LRVATIFGGVSQFHQVNALDAGVDIIVAAPGRLLDLIEQGLCDLSALEALVLDEA 159
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
D+MLDMGF IE++V P R T+LFSAT+ + +AE++ +DP +++
Sbjct: 160 DQMLDMGFAKPIERLVATLPKDRHTLLFSATMPKAITALAESLLRDPAHVEIAPPSTTVD 219
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
I QS++F+D HK L LLR +GQAVVFT K A+ + ++ +G A LHG
Sbjct: 220 RIAQSVMFLD-AAHKKAALLELLRTPEIGQAVVFTLQKNIANEVCAFISEAGITAEALHG 278
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ Q R R L+ R G +++LVATD+AARGIDV +THVFN+DLP PE YVHRIGRTG
Sbjct: 279 NKSQGQRERALDAFRAGDVQVLVATDIAARGIDVDTVTHVFNHDLPSLPESYVHRIGRTG 338
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEV 396
RAGR+GFA++L + +R + +ER + + +EV
Sbjct: 339 RAGRSGFAITLCDAEQRAWLHDVEREIGRPLTVEV 373
>gi|323342110|ref|ZP_08082343.1| ATP-dependent RNA helicase RhlE [Erysipelothrix rhusiopathiae ATCC
19414]
gi|322464535|gb|EFY09728.1| ATP-dependent RNA helicase RhlE [Erysipelothrix rhusiopathiae ATCC
19414]
Length = 475
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 166/394 (42%), Positives = 239/394 (60%), Gaps = 24/394 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M FK +G++E +L+AL + GY KPT +QEQAIP + DLI +QTG+GKTAAF +P L
Sbjct: 1 MEFKDLGINEKILQALTEQGYEKPTPIQEQAIPTLLKHNDLIGLAQTGTGKTAAFAVPTL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+K ++N + + R LVLTPTRELA+Q+ E Y
Sbjct: 61 QNLK---------EKAFDRNGKR-------------KIRALVLTPTRELAIQIQENFEMY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G YM +++ + GG+ Q++ L + L+ATPGRL D M+ G I+ S ++I +LDE
Sbjct: 99 GKYMD-LRSTVVFGGVAQRYQVKALRNGVDTLIATPGRLEDLMSQGYIDLSQIEIFILDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFIND+++I+ P +QT+LFSAT+ + ++AE + +P + V +
Sbjct: 158 ADRMLDMGFINDVKRIIKKLPKKKQTLLFSATMPSEISSIAEMLLNNPTTVAVTPVSSTV 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + QS+ +VD +K +LL +L +K +VFT TKR AD +A L S A +H
Sbjct: 218 ETVEQSVYYVDQ-RNKTQLLIDVLENKSFDSVLVFTRTKRGADRVARDLCRSNINAVAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD Q AR R L + G I ++VATD+AARGID+ + +V NY+LP+ PE YVHRIGRT
Sbjct: 277 GDKSQGARQRALSGFKDGTINVMVATDIAARGIDINELKYVVNYELPEVPETYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
GRAG +G A+S N E +K IE + ++P+
Sbjct: 337 GRAGFSGAAISFCNFEEIPLLKDIEHVIQMRVPV 370
>gi|359782600|ref|ZP_09285820.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
psychrotolerans L19]
gi|359369420|gb|EHK69991.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
psychrotolerans L19]
Length = 630
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 171/403 (42%), Positives = 247/403 (61%), Gaps = 21/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E + +A+ GYT PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFISLGLSEALARAVEDAGYTNPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ P + Q+ K QPR+LVLTPTRELA QV + + Y
Sbjct: 61 ERL------FPNGHPDGRQHVAK-------------QPRVLVLTPTRELAAQVHDSFKVY 101
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
+ +++ + GG+ Q+ L++ ++L+A PGRL+D ++ S ++ILVLDE
Sbjct: 102 ARDLP-MRSACVFGGVGLKPQVTALAKGVDVLVACPGRLLDLAGQQSVDLSAVEILVLDE 160
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+D++K++ P RQ +LFSAT + ++A + +DP ++V
Sbjct: 161 ADRMLDMGFIHDVKKVLARLPARRQNLLFSATFSKDITDLAGKLLQDPERIEVTPPNTTV 220
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q LF K LL +L+ Q +VFT TK A+ +A+ LN G AAP+H
Sbjct: 221 ERIEQR-LFRIPANQKRALLAHLITLGAWEQVLVFTRTKHGANRLAEYLNKHGLPAAPIH 279
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ QNAR + L + + +++LVATD+AARG+D+ + HV N++LP EDYVHRIGRT
Sbjct: 280 GNKSQNARTKALADFKSNEVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRT 339
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPK 403
GRAGR+G A+SLV+ E +K IER TKQ IP + GF+P+
Sbjct: 340 GRAGRSGEAISLVSPDEEKLLKAIERLTKQSIPDGDMQGFDPQ 382
>gi|188534378|ref|YP_001908175.1| ATP-dependent RNA helicase RhlE [Erwinia tasmaniensis Et1/99]
gi|188029420|emb|CAO97297.1| Putative ATP-dependent RNA helicase [Erwinia tasmaniensis Et1/99]
Length = 468
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 170/408 (41%), Positives = 245/408 (60%), Gaps = 24/408 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q QAIP ++GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNADILRAVAEQGYNEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ SS N P ++ + R L+LTPTRELA Q+ + Y
Sbjct: 61 -QLLSSHNPHPKGRRPV---------------------RALILTPTRELAAQIGENVQDY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+ ++++ + GG+ QM L ++L+ATPGRL+D + ++ S ++ILVLDE
Sbjct: 99 SKYLD-MRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNALDLSQVEILVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +P ++V
Sbjct: 158 ADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDEIKTLAEKLLHNPEQVEVARRNTAS 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ +TQ + VD K LL L+ Q +VFT TK A+ +A++LN G AA +H
Sbjct: 218 EQVTQHVHLVDK-KRKRELLSLLIGRGNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G+I++LVATD+AARGID+ + HV NY+LP EDYVHRIGRT
Sbjct: 277 GNKSQGARTRALSDFKEGKIRVLVATDIAARGIDIEELPHVVNYELPNVSEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
GRA G A+SLV E ++ IER K++IP + GFEP I+
Sbjct: 337 GRAAAVGEALSLVCVDEHKLLRDIERLLKREIPRMAVEGFEPDPSIKA 384
>gi|397167613|ref|ZP_10491055.1| ATP-dependent RNA helicase rhlE [Enterobacter radicincitans DSM
16656]
gi|396090971|gb|EJI88539.1| ATP-dependent RNA helicase rhlE [Enterobacter radicincitans DSM
16656]
Length = 481
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 170/412 (41%), Positives = 243/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F ++GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDALGLNPEILRAVAEQGYVQPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 H----KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
K +K + PV R L+LTPTRELA Q+
Sbjct: 61 QLLVQKEPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSQYLN-IRSLVVFGGVSINPQMMKLRGGVDVLIATPGRLLDLEHQNALKLDSVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPQRRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL ++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGITS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IER K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKEIPRIAIEGYEPDPSIKA 384
>gi|339324706|ref|YP_004684399.1| ATP-dependent RNA helicase RhlE [Cupriavidus necator N-1]
gi|338164863|gb|AEI75918.1| ATP-dependent RNA helicase RhlE [Cupriavidus necator N-1]
Length = 532
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 169/401 (42%), Positives = 245/401 (61%), Gaps = 18/401 (4%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL + +++A+ + GYT PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFSELGLSDKIVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ S + N Q ++ R LVLTPTRELA QV + Y
Sbjct: 61 QMLSDSAAR----GANGAQRPARLPV------------RALVLTPTRELAAQVEESVRNY 104
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y++ ++++ + GG+ Q++ L R EI++ATPGRL+DH++ I+ S +++LVLDE
Sbjct: 105 GKYLR-LRSMVMFGGVGINPQIEQLKRGVEIVVATPGRLLDHVSQRTIDLSQVELLVLDE 163
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI KI++ P RQ +LFSAT + +A+ + +P ++V
Sbjct: 164 ADRMLDMGFIHDIRKILNVLPAKRQNLLFSATFSDDIRALADRLLNNPASIEVARRNTTA 223
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q + VD K LL +L+R Q +VFT TK A+ +A++L G A +H
Sbjct: 224 ETVDQRVYPVDR-ERKRELLAHLVRQHDWHQVLVFTRTKHGANRLAEQLTKDGLSALAIH 282
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + G +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 283 GNKSQSARTRALSEFKSGTLRLLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 342
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
GRAG G A+SLV E ++ IER K+++ V+ GFE
Sbjct: 343 GRAGAEGEAISLVCVDEIALLRDIERLIKRKLEQTVLPGFE 383
>gi|440229962|ref|YP_007343755.1| DNA/RNA helicase, superfamily II [Serratia marcescens FGI94]
gi|440051667|gb|AGB81570.1| DNA/RNA helicase, superfamily II [Serratia marcescens FGI94]
Length = 455
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 169/408 (41%), Positives = 249/408 (61%), Gaps = 24/408 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+++GL+ +L+A+ + GY +PT +Q QAIP + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFETLGLNAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPVL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+S + PV + +P R L+LTPTRELA Q+ Y
Sbjct: 61 QLLSSKPS--PVKGR------------------RPV--RALILTPTRELAAQIGENVSAY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
+++ ++++ + GG+ QM L +IL+ATPGRL+D + ++ S+++ILVLDE
Sbjct: 99 SQHLR-LRSLVVFGGVSINPQMMKLRGGVDILIATPGRLLDLEHQNAVDLSNVEILVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI +++ P RQ +LFSAT + +A + +P ++V
Sbjct: 158 ADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAGKLLHNPASVEVARRNTAS 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ +TQ + FVD K LL ++ + Q +VFT TK A+ +A++LN G AA +H
Sbjct: 218 EQVTQHVHFVDK-KRKRELLSQMIGEGDWRQVLVFTRTKHGANHLAEQLNKDGITAAAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + GRI++LVATD+AARG+D+ + HV NY+LP PEDYVHRIGRT
Sbjct: 277 GNKSQGARTRALADFKDGRIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
GRA R G A+SLV E ++ IER K++IP + G+EP I+
Sbjct: 337 GRAERTGEAISLVCIDEHKLLRDIERLLKREIPRIALPGYEPDPTIKA 384
>gi|410621771|ref|ZP_11332615.1| ATP-dependent RNA helicase rhlB [Glaciecola pallidula DSM 14239 =
ACAM 615]
gi|410158664|dbj|GAC27989.1| ATP-dependent RNA helicase rhlB [Glaciecola pallidula DSM 14239 =
ACAM 615]
Length = 421
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 171/406 (42%), Positives = 240/406 (59%), Gaps = 26/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+FKS+GL LVL+A+ + GY +P+ +QEQ IP + G+D++ ++QTG+GKTAAF LP L
Sbjct: 1 MSFKSLGLSPLVLQAIEEKGYKQPSPIQEQGIPVVLEGKDVMAAAQTGTGKTAAFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
F +N P N+ + L+LTPTRELA Q+ Y
Sbjct: 61 SMF---ENTTPAAANNV---------------------KALILTPTRELAAQIDENIRSY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +K + GG+ QM L R +IL+ATPGRL+D + FS L+ILVLDE
Sbjct: 97 GKHLN-LKTQVVFGGVGINPQMIKLRRGVDILVATPGRLMDLYQQRAVKFSQLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI+KI+ P RQ +LFSAT + +A+ I +P+ + VN+
Sbjct: 156 ADRMLDMGFIHDIKKIMAILPKKRQNLLFSATFSDDIRKLAKTIVNNPVEISVNTKNSTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ Q I+ VD +KN LL +L+ + Q +VF TK AD +A L A+ +H
Sbjct: 216 TAVEQVIIPVDKT-NKNTLLSHLIIENNWHQVLVFCRTKHGADRLAKFLIKKNISASAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G+++IL ATD+AARGID+ + + N+DLP PEDYVHRIGRT
Sbjct: 275 GNKSQGARTRALADFKSGKVQILAATDIAARGIDINELPQIVNFDLPNIPEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
GRAG G A S ++ NI I+ + I EVI GFEP +++
Sbjct: 335 GRAGATGHAYSFATIEDKKNISDIQSLIGKVITTEVIKGFEPSEKL 380
>gi|372281558|ref|ZP_09517594.1| ATP-dependent RNA helicase [Oceanicola sp. S124]
Length = 538
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 167/399 (41%), Positives = 234/399 (58%), Gaps = 34/399 (8%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F + L VLKA+ GY PT +Q AIP A++G+D++ +QTG+GKTA+F LP + +
Sbjct: 4 FSDLDLDPKVLKAIADAGYESPTPIQAGAIPHALAGKDVLGIAQTGTGKTASFTLPMITR 63
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A R + PR LVL PTRELA QV + Y
Sbjct: 64 LAKG-------------------------RARARMPRSLVLCPTRELAAQVAENFDTYTK 98
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
YMK KA+ ++GG+ + Q L+ R ++L+ATPGRL+DH GK+ + +QI+V+DEAD
Sbjct: 99 YMKLTKAL-LIGGVSFKEQEALIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEAD 157
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLDMGFI DIE+I TP TRQT+ FSAT+ + + +P ++V +N
Sbjct: 158 RMLDMGFIPDIERIFSLTPFTRQTLFFSATMAPEIERITNTFLSNPERIEVARQATTGEN 217
Query: 243 ITQSILFVD------DILHKNRLLDYL--LRDKRVGQAVVFTATKRDADIIADRLNISGF 294
I Q ++ + K R+L + + + A+VF K D D+ A L G+
Sbjct: 218 IQQQVVMYKASRKDREGSEKRRILRQIIDMEGDSLTNAIVFCNRKTDVDVTAKSLKKYGY 277
Query: 295 LAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYV 354
AAP+HGDL Q+ R RTL+ R G +KILVA+DVAARG+DVP+++HVFN+D+P EDYV
Sbjct: 278 DAAPIHGDLDQSQRTRTLDGFRDGSLKILVASDVAARGLDVPSVSHVFNFDVPSHSEDYV 337
Query: 355 HRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIP 393
HRIGRTGRAGR G AV + + N+ IE+ +++IP
Sbjct: 338 HRIGRTGRAGRKGKAVMICVPRDEKNLADIEKLVEKEIP 376
>gi|374572806|ref|ZP_09645902.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. WSM471]
gi|374421127|gb|EHR00660.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. WSM471]
Length = 505
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 170/395 (43%), Positives = 240/395 (60%), Gaps = 26/395 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F+ GL E + +AL + Y PT +Q Q IP A++GRD++ +QTG+GKTA+F LP LH
Sbjct: 9 SFQDFGLAEPIARALTEENYVTPTPIQAQTIPTALTGRDVVGIAQTGTGKTASFALPILH 68
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ + R++ +P R+LVL+PTREL+ Q+ + YG
Sbjct: 69 RLL-----------------------ENRIKPQPKTARVLVLSPTRELSGQILDSFNAYG 105
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+++ ++I GG+P RQ++ L + E+L+ATPGRL+D + S + ++ LVLDEA
Sbjct: 106 RHIRLSSTLAI-GGVPMGRQVRSLMQGVEVLVATPGRLLDLVQSNGLKLGSVEFLVLDEA 164
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGFINDI KIV P+ RQT+ FSAT+ + +A+ + +DP + V + +
Sbjct: 165 DRMLDMGFINDIRKIVAKLPIKRQTLFFSATMPKDIAELADAMLRDPARVAVTPVSSTVE 224
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
I Q I+ VD K L LL+ ++V +A+VFT TK AD + L +G A+ +HG
Sbjct: 225 RIQQRIIQVD-FSAKPAFLAQLLKQEQVNRALVFTRTKHGADKVVKTLEKAGIPASAIHG 283
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ QN R RTL R G I+ LVATD+AARGIDV ITHV N+DLP PE YVHRIGRT
Sbjct: 284 NKSQNHRERTLAQFRTGEIRTLVATDIAARGIDVDGITHVINFDLPNVPETYVHRIGRTA 343
Query: 362 RAGRNGFAVSLVNHAERMN-IKKIERFTKQQIPIE 395
RAG G A+SLV E ++ ++ IER K +P E
Sbjct: 344 RAGAEGTAISLVAGGEELSYLRDIERLIKVALPRE 378
>gi|339998715|ref|YP_004729598.1| ATP-dependent RNA helicase rhlE [Salmonella bongori NCTC 12419]
gi|339512076|emb|CCC29797.1| putative ATP-dependent RNA helicase rhlE [Salmonella bongori NCTC
12419]
Length = 451
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 170/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GLH +L+A+ GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLHPDILRAIAGQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFSLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITQQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 IRDYSQYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPPKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL ++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|294142025|ref|YP_003558003.1| DEAD/DEAH box helicase [Shewanella violacea DSS12]
gi|293328494|dbj|BAJ03225.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
DSS12]
Length = 427
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 166/401 (41%), Positives = 248/401 (61%), Gaps = 17/401 (4%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F S+ L +L+ L ++GYT+PT +Q QAIPA ++G+D++ +QTGSGKTAAF LP L+
Sbjct: 12 GFSSLSLRPELLQVLTELGYTQPTPIQTQAIPAILAGQDIMAGAQTGSGKTAAFALPILN 71
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
K + +I + K + +K PA R LVLTPTRELALQV + +Y
Sbjct: 72 KLTA---QICLQKTEAQDSADK-----------PA-IRALVLTPTRELALQVHGSFVKYA 116
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+ ++K+ + GG+ Q Q+L+ +IL+ATPGRL+DH+ G +N + L+ LV DEA
Sbjct: 117 -KLTQVKSALVYGGVSIDAQAQILAAGVDILVATPGRLLDHLRRGSLNLNQLEFLVFDEA 175
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGF ++I+ IV P TRQT+LFSAT D + +++++ +DP ++V
Sbjct: 176 DRMLDMGFKDEIDAIVKQLPKTRQTLLFSATFDESIYGLSQSLLRDPKQIEVGERNAAAV 235
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
I Q + VD K L+ +L+ + Q ++F+ K AD +A L +G A HG
Sbjct: 236 EIDQRVYAVDSD-RKLALVTHLIESGNLQQVLIFSRKKLAADKLAANLTKAGISAQAFHG 294
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
DL Q AR + L+ + G +++LVATDVAARGID+ + +V NY+LP EDYVHRIGRTG
Sbjct: 295 DLSQGAREKVLQGFKDGEVRVLVATDVAARGIDIIDLNYVINYELPYKAEDYVHRIGRTG 354
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
RAG G A++L+ + ++++E +++P + + GFEP
Sbjct: 355 RAGNKGLAITLLCSEDEHLLEEVEVVLDKRLPQQWLAGFEP 395
>gi|94309401|ref|YP_582611.1| RNA helicase [Cupriavidus metallidurans CH34]
gi|93353253|gb|ABF07342.1| RNA helicase [Cupriavidus metallidurans CH34]
Length = 540
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 171/403 (42%), Positives = 247/403 (61%), Gaps = 21/403 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL + +++A+ + GYT PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFSELGLSDKLVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP--RMLVLTPTRELALQVTAATE 118
+ + + N N + A+P R LVLTPTRELA QV +
Sbjct: 61 QLLSETAARA-------NGGNAP----------RGARPNVRALVLTPTRELAAQVEESVR 103
Query: 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
YG Y+K ++++ + GG+ Q++ L R +I++ATPGRL+DH+ I+ SH+++LVL
Sbjct: 104 NYGKYLK-LRSMVMFGGVGINPQIEALRRGVDIVVATPGRLLDHVAQRTIDLSHVELLVL 162
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI+DI K+++ P RQ +LFSAT + +A+ + +P ++V
Sbjct: 163 DEADRMLDMGFIHDIRKVLNVLPPKRQNLLFSATFSDDIRALADRLLDNPASIEVARRNT 222
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ + Q + VD K LL +L+R Q +VFT TK A+ +A++L G A
Sbjct: 223 TAETVAQRVFPVDR-ERKRELLAHLVRQHDWHQVLVFTRTKHGANRLAEQLTKDGLSALA 281
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ Q+AR R L + G +++LVATD+AARGID+ + HV N+DLP PEDYVHRIG
Sbjct: 282 IHGNKSQSARTRALTEFKAGTLRLLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIG 341
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAG G A+SLV E ++ IER K+QI ++ GFE
Sbjct: 342 RTGRAGAEGEAISLVCVDEHGLLRDIERLIKRQIEQVLLPGFE 384
>gi|78485124|ref|YP_391049.1| DEAD/DEAH box helicase [Thiomicrospira crunogena XCL-2]
gi|78363410|gb|ABB41375.1| ATP-dependent RNA helicase [Thiomicrospira crunogena XCL-2]
Length = 445
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 168/402 (41%), Positives = 238/402 (59%), Gaps = 26/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S+GL + +L A+ + GY P+ +Q QAIPA + G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MTFASLGLSKPILDAVTQQGYETPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + K P Q R L+LTPTRELA QV+ + E Y
Sbjct: 61 ERLSKGKPA------------------------GPNQARALILTPTRELAAQVSDSVETY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G + +K+ + GG+ QM L + +IL+ATPGRL+D N I F L+ILVLDE
Sbjct: 97 GKQLS-LKSTVVFGGVKINPQMMRLRKGVDILVATPGRLLDLFNQNAIKFDQLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++I+ A P RQ +LFSAT + +A+ + +P+ + V
Sbjct: 156 ADRMLDMGFIHDIKRILKALPKNRQNLLFSATFSNEIRQLAKGLVNNPVEISVTPRNTTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+TQ I VD K LL L+++ Q ++F+ TK A+ + +L G AA +H
Sbjct: 216 TTVTQWIYPVDK-GRKAALLTKLIKENDWSQVLIFSRTKHGANRLTKQLEGKGIKAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + L + + G ++ LVATD+AARGID+ + HV N+DLP EDYVHRIGRT
Sbjct: 275 GNKSQGARTKALASFKDGTVQALVATDIAARGIDIDQLPHVVNFDLPNVAEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G AVSLV+ E + IE ++ +P ++I+GFEP
Sbjct: 335 GRAGAVGEAVSLVSADEVKELAGIENLIQKLLPRKIIDGFEP 376
>gi|271500987|ref|YP_003334012.1| DEAD/DEAH box helicase domain-containing protein [Dickeya dadantii
Ech586]
gi|270344542|gb|ACZ77307.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech586]
Length = 452
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 174/408 (42%), Positives = 245/408 (60%), Gaps = 24/408 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+S+GL +L+A+ + GY +PT VQ QAIP + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFQSLGLSADILRAVEEQGYREPTPVQSQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
N+ PV+ K +P R L+LTPTRELA Q+ + Y
Sbjct: 61 QLL----NESPVLAKG----------------RRPV--RALILTPTRELAAQIGENVQAY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y++ ++++ + GG+ QM L +IL+ATPGRL+D + ++ S ++ILVLDE
Sbjct: 99 SKYLR-LRSLVVFGGVSINPQMMKLRGGVDILIATPGRLLDLEHQNAVDLSQVEILVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI +++ P RQ +LFSAT + +A + +P ++V
Sbjct: 158 ADRMLDMGFIHDIRRVLAKLPPKRQNLLFSATFSDEIKELAGKLLTNPASVEVVRRNTPS 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ +TQ + FVD K LL +L+ Q +VFT TK A+ +A+ LN G AA +H
Sbjct: 218 ELVTQHVHFVDKK-RKRELLSHLIGKHNWQQVLVFTRTKHGANHLAELLNKDGITAAAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L N + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHRIGRT
Sbjct: 277 GNKSQGARTRALANFKDGDIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
GRA G A+SLV E ++ IER K++IP I G+EP I+
Sbjct: 337 GRAASTGEALSLVCVDEHKLLRDIERLLKREIPRIAIPGYEPDPTIKA 384
>gi|407789880|ref|ZP_11136978.1| DEAD/DEAH box helicase [Gallaecimonas xiamenensis 3-C-1]
gi|407205702|gb|EKE75670.1| DEAD/DEAH box helicase [Gallaecimonas xiamenensis 3-C-1]
Length = 462
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 174/403 (43%), Positives = 240/403 (59%), Gaps = 32/403 (7%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F +GL + +L A+ + GY P+ +Q QAIPA + GRD++ ++QTG+GKTA F LP LH
Sbjct: 6 FADLGLSKALLDAVAEQGYEHPSPIQAQAIPAVLEGRDVMAAAQTGTGKTAGFTLPLLH- 64
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
S +K+ Q N Q R LVLTPTRELA QV + YG
Sbjct: 65 LLSGGSKV--------QGN---------------QVRALVLTPTRELAAQVAESVNTYGK 101
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
++ ++ + GG+ QM L R ++L+ATPGRL+D + F+ L++LVLDEAD
Sbjct: 102 HLP-LRCQVVFGGVKINPQMMALRRGTDVLVATPGRLLDLYQQNAVRFNQLEVLVLDEAD 160
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLDMGFI+DI+KI+ P RQ +LFSAT + +A+ + DP + V +
Sbjct: 161 RMLDMGFIHDIKKILAVLPPKRQNLLFSATFSDEIRALAKGLVNDPQEISVTPPNSTAER 220
Query: 243 ITQSILFVDDILHKNR---LLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+ Q+I VD KNR LL L+ D Q +VFT TK A+ +A +L S AAP+
Sbjct: 221 VEQAIYPVD----KNRKAPLLCKLIDDGNWQQVLVFTRTKHGANRLAKQLIASQITAAPI 276
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HG+ Q+AR + L + + G +++LVATD+AARG+D+ + V N+DLP EDYVHRIGR
Sbjct: 277 HGNKSQSARTKALADFKSGAVRVLVATDIAARGLDIDQLPQVVNFDLPNVAEDYVHRIGR 336
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
TGRAG +G AVSLV E +K IER +Q +P E + GFEP
Sbjct: 337 TGRAGASGKAVSLVCSEETKELKSIERLIRQVLPRENVPGFEP 379
>gi|254286694|ref|ZP_04961649.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae AM-19226]
gi|150423278|gb|EDN15224.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae AM-19226]
Length = 464
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 170/402 (42%), Positives = 239/402 (59%), Gaps = 26/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S+GL +LKA+ + GY P+ +Q QAIPA ++G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
A K P ++ N Q R L+LTPTRELA Q+ Y
Sbjct: 61 ELLA----KGPKVRAN--------------------QVRALILTPTRELAAQIQDNVMLY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +K+ + GG+ QMQ + + +IL+ATPGRL+D N + F L+ILVLDE
Sbjct: 97 GRHLP-LKSAVVFGGVKINPQMQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ +LFSAT + +A+ + +P+ + V+
Sbjct: 156 ADRMLDMGFIRDIRKILKLLPAKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I + D+ K +L L+++ Q +VF TK A+ +A LN G AA +H
Sbjct: 216 RTVEQCI-YPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G ++ILVATD+AARGID+P + V N++LPK EDYVHRIGRT
Sbjct: 275 GNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G A+SLV+ E + IER T+ +P + GFEP
Sbjct: 335 GRAGEVGKAISLVSAIEAPELFAIERLTQALLPRVNLAGFEP 376
>gi|421349929|ref|ZP_15800298.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE-25]
gi|395956546|gb|EJH67140.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE-25]
Length = 461
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 171/402 (42%), Positives = 239/402 (59%), Gaps = 26/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S+GL +LKA+ + GY P+ +Q QAIPA ++G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
A K P ++ N Q R L+LTPTRELA Q+ Y
Sbjct: 61 ELLA----KGPKVRAN--------------------QVRALILTPTRELAAQIQDNVMLY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +K+ + GG+ QMQ + + +IL+ATPGRL+D N + F L+ILVLDE
Sbjct: 97 GRHLP-LKSAVVFGGVKINPQMQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ +LFSAT + +A+ + +P+ + V+
Sbjct: 156 ADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I + D+ K +L L++D Q +VF TK A+ +A LN G AA +H
Sbjct: 216 RTVEQCI-YPADVKKKPDMLVKLVKDGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G ++ILVATD+AARGID+P + V N++LPK EDYVHRIGRT
Sbjct: 275 GNKSQGARTRALADFKVGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G A+SLV+ E + IER T+ +P + GFEP
Sbjct: 335 GRAGEVGKAISLVSAIEAPELFAIERLTQALLPRVNLAGFEP 376
>gi|336314302|ref|ZP_08569221.1| DNA/RNA helicase, superfamily II [Rheinheimera sp. A13L]
gi|335881315|gb|EGM79195.1| DNA/RNA helicase, superfamily II [Rheinheimera sp. A13L]
Length = 420
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 168/401 (41%), Positives = 244/401 (60%), Gaps = 25/401 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F ++GL +L A+ GY PT +Q+Q IP + G+D++ +QTG+GKTAAF LP L
Sbjct: 1 MSFATLGLDPRILSAVTNQGYHTPTPIQQQTIPVILEGKDVLAGAQTGTGKTAAFTLPVL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ L++N K+ +H Q R LVLTPTRELA QV + + Y
Sbjct: 61 --------------QLLSKNTTKV-SH--------LQVRCLVLTPTRELAQQVADSVKAY 97
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G + +K GG+ Q SR +IL+ATPGRL+DH++ G ++ S LQILVLDE
Sbjct: 98 GADLP-LKYAVFYGGVSINPQYDQASRGLDILVATPGRLLDHLHQGTVSLSELQILVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++I+ P RQT+ FSAT + +A+ + K P++++V
Sbjct: 157 ADRMLDMGFIHDIKRIMARLPKERQTLFFSATFAKEIKELADTLLKSPVLIEVAKPNSTA 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
I Q VD K +L YL+ ++ Q ++F+ TK AD +A +L + G A +H
Sbjct: 217 DKIEQLAYRVDS-QRKREMLSYLIGSRQWKQVLIFSRTKHGADRLAKQLRLDGIEAGAIH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD Q AR + L++ + R+ +LVATD+AARG+D+ + V NYDLP+ EDYVHRIGRT
Sbjct: 276 GDKSQGARTKALDDFKNNRLSVLVATDIAARGLDIEELPIVVNYDLPQVAEDYVHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
GRAG +G A+SL+ + + ++ IE+ TKQ I +V+ G+E
Sbjct: 336 GRAGNSGLALSLITPDDLVMLQAIEKVTKQVIAQQVLPGYE 376
>gi|257440057|ref|ZP_05615812.1| putative ATP-dependent RNA helicase RhlE [Faecalibacterium
prausnitzii A2-165]
gi|257197409|gb|EEU95693.1| DEAD/DEAH box helicase [Faecalibacterium prausnitzii A2-165]
Length = 641
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 166/396 (41%), Positives = 240/396 (60%), Gaps = 28/396 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F + L VL+A+ + GY P+ +Q AIP ++GRDL+ +QTG+GKTAAF LP L
Sbjct: 1 MTFNELNLSAPVLRAVAQAGYESPSPIQAAAIPPVLAGRDLMGCAQTGTGKTAAFALPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ +S P K + R L+LTPTRELALQ+ + E Y
Sbjct: 61 DRLTAS---APRKKGAI---------------------RALILTPTRELALQIGESFEAY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ +++ I GG+ Q+ L + +IL+A PGRL D + G ++ S+++I VLDE
Sbjct: 97 GKYLT-LRSTVIFGGVGQAPQVAALKKGVDILIACPGRLNDLVGQGLLDLSNIEIFVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF++D++K++ P RQ ++FSAT+ + +A I DP +KV+ +
Sbjct: 156 ADRMLDMGFVHDVKKVIAKLPRQRQNLMFSATMPKEIEQLAAGILHDPAFVKVDPVSSTV 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRD--KRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
I QS+ FV+ +K LL +L+++ V A+VF+ TK AD IA LN G AA
Sbjct: 216 DRIQQSLYFVEK-GNKKFLLPWLIKNLKPEVVNALVFSRTKHGADKIAKDLNKQGIPAAA 274
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ Q AR LE+ + G+ ++LVATD+AARGID+ ++HVFNYDLP+ PE YVHRIG
Sbjct: 275 IHGNKSQTARVTALEDFKAGKTRVLVATDIAARGIDISELSHVFNYDLPEVPETYVHRIG 334
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
RT RAG +G AVS E+ + IE+ ++QIP+
Sbjct: 335 RTARAGADGTAVSFCAPEEKEYLAGIEKLNRRQIPV 370
>gi|152994240|ref|YP_001339075.1| DEAD/DEAH box helicase [Marinomonas sp. MWYL1]
gi|150835164|gb|ABR69140.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
Length = 418
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 166/402 (41%), Positives = 246/402 (61%), Gaps = 25/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GLH+ +++ + ++GYT PT +Q AIPA ++ +DL+ +QTG+GKTAAF LP L
Sbjct: 1 MSFASLGLHQDIIQQVTELGYTTPTPIQLAAIPAVLAKKDLMAGAQTGTGKTAAFALPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ +K+ N K ++LVLTPTRELA QV A+ +Y
Sbjct: 61 HQILQAKDS----------NTTKGI-------------QVLVLTPTRELAQQVHASFLKY 97
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
+ I+++ GG Q+ L + ++L+ATPGRL++ + I+ S LQ LVLDE
Sbjct: 98 SAKLP-IQSVVAYGGASINMQLDALRQGCDVLVATPGRLLELIMKNLIDLSKLQTLVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI++I+ P +RQT+ FSAT + + +++ + KDP +++VNS
Sbjct: 157 ADRMLDMGFIIDIQRILKKLPKSRQTLFFSATFNDEIFALSKTLLKDPQLIEVNSRNTTA 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ Q+I VD K+ LL +L+ K Q ++FT TK+ AD +A + G +H
Sbjct: 217 TQVEQTIYAVDQD-RKSALLSFLIGSKNWQQVLIFTRTKQGADELAKEMEKDGIATQSIH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD Q AR+R L + + G+++ LVATDVAARGID+ + +V N++LP EDY+HRIGRT
Sbjct: 276 GDKSQGARDRVLADFKAGKVRALVATDVAARGIDIEQLQYVVNHELPYNAEDYIHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G A+SLV+ ER + IE+ +Q + + GFEP
Sbjct: 336 GRAGSTGLAISLVSEKERYLLTDIEKLVGEQFVPQWLPGFEP 377
>gi|417818956|ref|ZP_12465576.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE39]
gi|423939012|ref|ZP_17732494.1| type III restriction enzyme, res subunit [Vibrio cholerae HE-40]
gi|423969805|ref|ZP_17736043.1| type III restriction enzyme, res subunit [Vibrio cholerae HE-46]
gi|340043670|gb|EGR04628.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE39]
gi|408664342|gb|EKL35180.1| type III restriction enzyme, res subunit [Vibrio cholerae HE-40]
gi|408667076|gb|EKL37829.1| type III restriction enzyme, res subunit [Vibrio cholerae HE-46]
Length = 464
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 170/406 (41%), Positives = 241/406 (59%), Gaps = 26/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S+GL +LKA+ + GY P+ +Q QAIPA ++G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
A K P ++ N Q R L+LTPTRELA Q+ Y
Sbjct: 61 ELLA----KGPKVRAN--------------------QVRTLILTPTRELAAQIQENVMLY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +K+ + GG+ QMQ + + +IL+ATPGRL+D N + F L+ILVLDE
Sbjct: 97 GRHLP-LKSAVVFGGVKINPQMQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ +LFSAT + +A+ + +P+ + V+
Sbjct: 156 ADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I + D+ K +L L+++ Q +VF TK A+ +A LN G AA +H
Sbjct: 216 RTVEQCI-YPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G ++ILVATD+AARGID+P + V N++LPK EDYVHRIGRT
Sbjct: 275 GNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
GRAG G A+SLV+ E + IER T+ +P + GFEP ++
Sbjct: 335 GRAGEVGKAISLVSAIEAPELFAIERLTQALLPRVNLAGFEPTNQL 380
>gi|333915443|ref|YP_004489175.1| DEAD/DEAH box helicase domain-containing protein [Delftia sp.
Cs1-4]
gi|333745643|gb|AEF90820.1| DEAD/DEAH box helicase domain protein [Delftia sp. Cs1-4]
Length = 598
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 171/404 (42%), Positives = 247/404 (61%), Gaps = 22/404 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+ + L +LKA+++ GY PT +Q QAIPA ++G DL+ +QTG+GKTAAF LP L
Sbjct: 1 MTFEELNLAPAILKAVLEEGYENPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ S+ ++P R +F R LVLTPTRELA QV + Y
Sbjct: 61 HRL--SQGQVP------------------RNKFGGKGIRALVLTPTRELAAQVEESVRSY 100
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+ I + I GG+ Q+ + + +IL+ATPGRL+D G ++ S +++LVLDE
Sbjct: 101 AKYLD-INSTVIFGGVGMKPQIDRIKKGVDILVATPGRLLDLQQQGFMDLSTVEVLVLDE 159
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+D++K++ P +Q++LFSAT + ++A + ++P ++V
Sbjct: 160 ADRMLDMGFIHDVKKVLALVPKDKQSLLFSATFSDEIRDLANGLLRNPQSIQVTPSNTTV 219
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ ITQ I V K LL +++ + Q +VFT TK A+ +A+ L + A LH
Sbjct: 220 QRITQVIHPVGRGKKKQVLL-HIINENNWSQVLVFTRTKFGANNVAEFLTKNNISAMALH 278
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR + L + G ++ LVATD+AARGID+ + HV NY++P EDYVHRIGRT
Sbjct: 279 GNKSQSARTQALAGFKTGELRALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRT 338
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRAGR G AVSLV E + IERFTKQ+IP++V+ GF P++
Sbjct: 339 GRAGREGHAVSLVCMDEEGFMMDIERFTKQEIPVQVLEGFGPEE 382
>gi|377555812|ref|ZP_09785540.1| ATP-dependent RNA helicase RhlE [endosymbiont of Bathymodiolus sp.]
Length = 430
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 168/402 (41%), Positives = 243/402 (60%), Gaps = 26/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F +GL + +L+A+ K GY KP+ +QEQAIP + G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MGFSKLGLSDSILEAVTKKGYDKPSPIQEQAIPVVLDGKDIMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
++ K +N++ R L+LTPTRELA QV A+ Y
Sbjct: 61 Q----------ILSKGTPAKSNQV--------------RTLILTPTRELAAQVNASVIDY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G + +K+ + GG+ QMQ L +IL+ATPGRL+D + + F L+ILV DE
Sbjct: 97 GKQLP-LKSTVVFGGVKINPQMQKLRGGVDILVATPGRLLDLYSQNAVKFDQLEILVFDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI++I+ P RQT++FSAT + +A+ + DP+ + V
Sbjct: 156 ADRMLDMGFIHDIKRILKILPKNRQTLMFSATFSEEIRKLAKTLVNDPIEISVTPRNTTV 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
K++ Q I VD K LL +L+++ Q +VF+ TK A+ IA +L G AA +H
Sbjct: 216 KSVKQWIHPVDK-SKKQALLTHLIQEHSWYQVLVFSRTKHGANRIATQLGKKGITAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G++ +LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 275 GNKSQGARTRALADFKAGKVNVLVATDIAARGIDIVELPHVVNFDLPNVPEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G A+SLV+ E + IER T++++ +++ F P
Sbjct: 335 GRAGSKGEAISLVSADEAKQLFDIERLTQKKLERIMVDDFIP 376
>gi|448241070|ref|YP_007405123.1| ATP-dependent RNA helicase [Serratia marcescens WW4]
gi|445211434|gb|AGE17104.1| ATP-dependent RNA helicase [Serratia marcescens WW4]
Length = 459
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 170/408 (41%), Positives = 248/408 (60%), Gaps = 24/408 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+++GL +++A+ + GY +PT +Q QAIP + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFETLGLSAEIVRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
SK+ PV + +P R L+LTPTRELA Q+ + Y
Sbjct: 61 QLL--SKHDHPVKGR------------------RPV--RALILTPTRELAAQIGENVDAY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
+++ ++++ + GG+ QM L +IL+ATPGRL+D + ++ S ++ILVLDE
Sbjct: 99 SKHLR-LRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI +++ P RQ +LFSAT + +A + +P ++V
Sbjct: 158 ADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALANKLLHNPASVEVARRNTAS 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I QS+ FVD K LL ++ + Q +VFT TK A+ +A++LN G AA +H
Sbjct: 218 EQIEQSVHFVDK-KRKRELLSQMIGEGDWKQVLVFTRTKHGANHLAEQLNKDGITAAAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + GRI++LVATD+AARG+D+ + HV NY+LP PEDYVHRIGRT
Sbjct: 277 GNKSQGARTRALADFKDGRIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
GRA R G A+SLV E ++ IER K++IP + G+EP I+
Sbjct: 337 GRAERTGEAISLVCVDEHKLLRDIERLLKREIPRIALPGYEPDPTIKA 384
>gi|378768016|ref|YP_005196486.1| ATP-dependent RNA helicase RhlE [Pantoea ananatis LMG 5342]
gi|365187499|emb|CCF10449.1| ATP-dependent RNA helicase RhlE [Pantoea ananatis LMG 5342]
Length = 449
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 168/408 (41%), Positives = 246/408 (60%), Gaps = 24/408 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY++PT +Q QAIP +SGRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSADILRAVAEQGYSEPTPIQRQAIPVVLSGRDLLASAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
K +++ + R R +P R L+LTPTRELA QV Y
Sbjct: 61 QKLSANTGAV-------------------RGR-RPV--RALILTPTRELAAQVGENVVEY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
++ ++++ + GG+ QM L +IL+ATPGRL+D ++ ++ S +++LVLDE
Sbjct: 99 SKFLP-LRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLVHQNAVDLSQVEVLVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +P ++V
Sbjct: 158 ADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDEIKTLAEKLLHNPEQVEVARRNTAS 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ ++Q + FVD K LL L+ + Q +VFT TK A+ +A++L G AA +H
Sbjct: 218 EQVSQQVHFVDK-KRKRELLSQLIGEGNWQQVLVFTRTKHGANHLAEQLGKDGITAAAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP EDYVHRIGRT
Sbjct: 277 GNKSQGARTRALADFKSGAIRVLVATDIAARGLDIEELPHVVNYELPNVAEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
GRA G A+SLV E ++ IER K++IP + G+EP I+
Sbjct: 337 GRAAATGVALSLVCVDEHKLLRDIERLLKREIPRLAVPGYEPDPSIKA 384
>gi|399072166|ref|ZP_10750181.1| DNA/RNA helicase, superfamily II [Caulobacter sp. AP07]
gi|398042783|gb|EJL35752.1| DNA/RNA helicase, superfamily II [Caulobacter sp. AP07]
Length = 494
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 168/392 (42%), Positives = 233/392 (59%), Gaps = 25/392 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F + L + +LKAL GYT PT +Q QAIP +SGRDL+ +QTG+GKTAAF LP LH
Sbjct: 15 QFTDLALAKPLLKALTDKGYTTPTPIQAQAIPLVMSGRDLLGIAQTGTGKTAAFALPILH 74
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ A K P R F R LVL+PTRELA Q+ + YG
Sbjct: 75 RLAEDKKPAP------------------RRGF-----RCLVLSPTRELATQIADSFRDYG 111
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+M + +I GG+ Y QM+ L+ ++++ATPGRL+DH+ + + ++I VLDEA
Sbjct: 112 KHMG-LTVATIFGGVKYGPQMKALAAGVDVVVATPGRLMDHLGEKSAHLNGVEIFVLDEA 170
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
D+MLD+GF+ I KI P RQ + FSAT+ +G +A + K+P + + +
Sbjct: 171 DQMLDLGFVVPIRKIASQLPKERQNLFFSATMPSEIGKLAGELLKNPAQVAITPSATTVE 230
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
I QS++F++ K LL LL DK V +++VFT TKR AD +A L SG AA +HG
Sbjct: 231 RIDQSLIFIE-AQRKRPLLAELLADKSVERSIVFTRTKRGADRVAKYLVASGIEAAAIHG 289
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
D Q R R L + G++K L+ATD+AARGIDV ++HVFN++LP PE YVHRIGRT
Sbjct: 290 DKTQGQRERALAAFKAGQVKALIATDIAARGIDVNDVSHVFNFELPNVPESYVHRIGRTA 349
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIP 393
R G+ G A+S ER ++ I++ T+Q IP
Sbjct: 350 RKGKEGVAISFCADDERNLLRDIQKATRQTIP 381
>gi|365848675|ref|ZP_09389147.1| ATP-dependent RNA helicase RhlE [Yokenella regensburgei ATCC 43003]
gi|364570255|gb|EHM47873.1| ATP-dependent RNA helicase RhlE [Yokenella regensburgei ATCC 43003]
Length = 450
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 244/412 (59%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F ++GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDTLGLNPEILRAVAEQGYREPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
S +K + P+ R L+LTPTRELA Q+
Sbjct: 61 QHLISREPHAKGRRPI--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + +++L
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNALKLDSIEVL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL +L+ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSHLIGKDDWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IER K++IP + G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKEIPRIAVPGYEPDPSIKA 384
>gi|183222181|ref|YP_001840177.1| ATP-dependent RNA helicase RhlE [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|189912238|ref|YP_001963793.1| superfamily II DNA and RNA helicase [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167776914|gb|ABZ95215.1| Superfamily II DNA and RNA helicase [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167780603|gb|ABZ98901.1| ATP-dependent RNA helicase RhlE [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 471
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 166/393 (42%), Positives = 237/393 (60%), Gaps = 25/393 (6%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F + L + KA+ + GYTKPT +Q QAIP + DL+ +QTG+GKTAAF LP +H
Sbjct: 8 FSDLKLDRYIQKAVAETGYTKPTPIQIQAIPLLLDNHDLLGCAQTGTGKTAAFALPMIHN 67
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
S+ R + P QPR LVL PTRELA+QV + YG
Sbjct: 68 LIST-----------------------RAKPNPKQPRSLVLVPTRELAIQVHESFVLYGK 104
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
Y + I+ I GG+ Q + ++ ++L+ATPGRL+D MN ++ +L+I VLDEAD
Sbjct: 105 YTQ-IRTAVIFGGVGQNPQAKAIASGLDVLIATPGRLVDLMNQNLVSLKNLEIFVLDEAD 163
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLDMGFI+DI KI+ P RQ + FSAT+ + +A +I +P+ + V + +
Sbjct: 164 RMLDMGFIHDIRKIISYLPKRRQNLFFSATMPPEIEKLANSILVEPIRIDVTPVSSTVEL 223
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
I+QS+++ + + K LL +L +DK + ++FT TK A+ I++ LN SG +HG+
Sbjct: 224 ISQSVMYTE-LADKKNLLLHLFKDKNFKKTIIFTKTKHGANKISELLNKSGIKTDVIHGN 282
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
Q+AR R LE+ R G+ + LVATD+AARGID+ ITHV NY++P PE YVHRIGRT R
Sbjct: 283 KSQSARQRALEDFRSGKNRALVATDLAARGIDIDDITHVINYEIPYVPETYVHRIGRTAR 342
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIE 395
AG+NG A+++ ER IK IE+ IP++
Sbjct: 343 AGKNGIAIAIAEADERSLIKDIEKVIGISIPVD 375
>gi|283833909|ref|ZP_06353650.1| ATP-dependent RNA helicase RhlE [Citrobacter youngae ATCC 29220]
gi|291070581|gb|EFE08690.1| ATP-dependent RNA helicase RhlE [Citrobacter youngae ATCC 29220]
Length = 447
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 244/412 (59%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ K++ PV R L+LTPTRELA Q+
Sbjct: 61 QHLVTHQPHGKSRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLIATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + ++AE + ++PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKSLAEKLLRNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL ++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTPGYEPDPSIKA 384
>gi|260433500|ref|ZP_05787471.1| putative ATP-dependent RNA helicase RhlE [Silicibacter
lacuscaerulensis ITI-1157]
gi|260417328|gb|EEX10587.1| putative ATP-dependent RNA helicase RhlE [Silicibacter
lacuscaerulensis ITI-1157]
Length = 476
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 165/399 (41%), Positives = 237/399 (59%), Gaps = 34/399 (8%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F + L+ VLKA+ + GY PT +QE AIP A+ GRD++ +QTG+GKTA+F+LP +
Sbjct: 4 FTDLNLNPKVLKAIEEAGYETPTPIQEGAIPPALEGRDVLGIAQTGTGKTASFVLPMITL 63
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A R R + PR LVL PTRELA QV + Y
Sbjct: 64 LA-------------------------RGRARARMPRSLVLCPTRELAAQVAENFDTYTK 98
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
++K KA+ ++GG+ + Q L+ R ++L+ATPGRL+DH GK+ + +QI+V+DEAD
Sbjct: 99 HLKLTKAL-LIGGVSFKEQDALIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEAD 157
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLDMGFI DIE+I TP TRQT+ FSAT+ + + + P ++V +
Sbjct: 158 RMLDMGFIPDIERIFSLTPFTRQTLFFSATMAPEIERITDTFLSAPARIEVARQATASET 217
Query: 243 ITQSILFVD------DILHKNRLLDYLL--RDKRVGQAVVFTATKRDADIIADRLNISGF 294
I Q ++ + + K ++L L+ + A++F K D DI A L G+
Sbjct: 218 IEQGVVMIKGGRRDREGSTKRKVLRALIDAEGDKCTNAIIFCNRKTDVDITAKSLKKYGY 277
Query: 295 LAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYV 354
AA +HGDL Q+ R RTLE R G ++ LVA+DVAARG+DVP+++HVFN+D+P PEDYV
Sbjct: 278 DAAAIHGDLDQSVRTRTLEGFREGSLRFLVASDVAARGLDVPSVSHVFNFDVPSHPEDYV 337
Query: 355 HRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIP 393
HRIGRTGRAGR G A++L + ++ IE+ +++IP
Sbjct: 338 HRIGRTGRAGREGKAITLCTARDEKALEAIEKLIQKEIP 376
>gi|73540223|ref|YP_294743.1| helicase [Ralstonia eutropha JMP134]
gi|72117636|gb|AAZ59899.1| Helicase, C-terminal:Type III restriction enzyme, res
subunit:DEAD/DEAH box helicase, N-terminal [Ralstonia
eutropha JMP134]
Length = 506
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 170/401 (42%), Positives = 246/401 (61%), Gaps = 24/401 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL + +++A+ + GYT PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFSELGLSDKLVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ S + + KPA R LVLTPTRELA QV + Y
Sbjct: 61 QLLSESAPQ---------------------RQGKPAV-RALVLTPTRELAAQVEESVRNY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y++ ++++ + GG+ Q++ L R EI++ATPGRL+DH++ I+ S +++LVLDE
Sbjct: 99 GKYVR-LRSMVMFGGVGINPQIEQLRRGVEIVVATPGRLLDHVSQRTIDLSSVELLVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI KI++ P RQ +LFSAT + +A+ + +P ++V
Sbjct: 158 ADRMLDMGFIHDIRKILNVLPPKRQNLLFSATFSDDIRALADRLLNNPASIEVARRNTTA 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q + VD K LL +L+R+ Q +VFT TK A+ +A++L G A +H
Sbjct: 218 ETVAQRVYPVDR-ERKRELLAHLVREHDWHQVLVFTRTKHGANRLAEQLTKDGLSALAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + G +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 277 GNKSQSARTRALSEFKAGTLRLLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
GRAG G A+SLV E ++ IER K+++ V+ GFE
Sbjct: 337 GRAGAEGEAISLVCVDEHGLLRDIERLIKRKLEQTVLTGFE 377
>gi|424591126|ref|ZP_18030559.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1037(10)]
gi|408032992|gb|EKG69556.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1037(10)]
Length = 464
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 170/402 (42%), Positives = 239/402 (59%), Gaps = 26/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S+GL +LKA+ + GY P+ +Q QAIPA ++G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
A K P ++ N Q R L+LTPTRELA Q+ Y
Sbjct: 61 ELLA----KGPKVRAN--------------------QVRALILTPTRELAAQIQDNVMLY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +K+ + GG+ QMQ + + +IL+ATPGRL+D N + F L+ILVLDE
Sbjct: 97 GRHLP-LKSAVVFGGVKINPQMQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ +LFSAT + +A+ + +P+ + V+
Sbjct: 156 ADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I + D+ K +L L+++ Q +VF TK A+ +A LN G AA +H
Sbjct: 216 RTVEQCI-YPADVKKKPAMLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G ++ILVATD+AARGID+P + V N++LPK EDYVHRIGRT
Sbjct: 275 GNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G A+SLV+ E + IER T+ +P + GFEP
Sbjct: 335 GRAGEVGKAISLVSAIEAPELFAIERLTQALLPRVNLAGFEP 376
>gi|113866560|ref|YP_725049.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
gi|113525336|emb|CAJ91681.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
Length = 520
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 169/401 (42%), Positives = 245/401 (61%), Gaps = 18/401 (4%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL + +++A+ + GYT PT +Q QAIPA + G DL+ +QTG+GKTA F LP L
Sbjct: 1 MSFSELGLSDKIVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ S + N Q ++ R LVLTPTRELA QV + Y
Sbjct: 61 QLLSDSAAR----GANGAQRPARLPV------------RALVLTPTRELAAQVEESVRNY 104
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y++ ++++ + GG+ Q++ L R EI++ATPGRL+DH++ I+ S +++LVLDE
Sbjct: 105 GKYLR-LRSMVMFGGVGINPQIEQLKRGVEIVVATPGRLLDHVSQRTIDLSQVELLVLDE 163
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI KI++ P RQ +LFSAT + +A+ + +P ++V
Sbjct: 164 ADRMLDMGFIHDIRKILNVLPAKRQNLLFSATFSDDIRALADRLLNNPASIEVARRNTTA 223
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q + VD K LL +L+R Q +VFT TK A+ +A++L G A +H
Sbjct: 224 ETVDQRVYPVDR-ERKRELLAHLVRQHDWHQVLVFTRTKHGANRLAEQLTKDGLSALAIH 282
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR R L + G +++LVATD+AARGID+ + HV N+DLP PEDYVHRIGRT
Sbjct: 283 GNKSQSARTRALSEFKSGTLRLLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRT 342
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
GRAG G A+SLV E ++ IER K+++ V+ GFE
Sbjct: 343 GRAGAEGEAISLVCVDEIALLRDIERLIKRKLEQTVLPGFE 383
>gi|254225215|ref|ZP_04918828.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V51]
gi|125622314|gb|EAZ50635.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V51]
Length = 464
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 170/406 (41%), Positives = 241/406 (59%), Gaps = 26/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S+GL +LKA+ + GY P+ +Q QAIPA ++G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
A K P ++ N Q R L+LTPTRELA Q+ Y
Sbjct: 61 ELLA----KGPKVRAN--------------------QVRALILTPTRELAAQIQDNVMLY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +K+ + GG+ QMQ + + +IL+ATPGRL+D N + F L+ILVLDE
Sbjct: 97 GRHLP-LKSAVVFGGVKINPQMQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ +LFSAT + +A+ + +P+ + V+
Sbjct: 156 ADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I + D+ K +L L+++ Q +VF TK A+ +A LN G AA +H
Sbjct: 216 RTVEQCI-YPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G ++ILVATD+AARGID+P + V N++LPK EDYVHRIGRT
Sbjct: 275 GNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
GRAG G A+SLV+ E + IER T+ +P + GFEP ++
Sbjct: 335 GRAGEVGKAISLVSAIEAPELFAIERLTQALLPRVNLAGFEPTNQL 380
>gi|453062686|gb|EMF03676.1| ATP-dependent RNA helicase RhlE [Serratia marcescens VGH107]
Length = 457
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 170/408 (41%), Positives = 248/408 (60%), Gaps = 24/408 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+++GL +++A+ + GY +PT +Q QAIP + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFETLGLSAEIVRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
SK+ PV + +P R L+LTPTRELA Q+ + Y
Sbjct: 61 QLL--SKHDHPVKGR------------------RPV--RALILTPTRELAAQIGENVDAY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
+++ ++++ + GG+ QM L +IL+ATPGRL+D + ++ S ++ILVLDE
Sbjct: 99 SKHLR-LRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI +++ P RQ +LFSAT + +A + +P ++V
Sbjct: 158 ADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALANKLLHNPASVEVARRNTAS 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I QS+ FVD K LL ++ + Q +VFT TK A+ +A++LN G AA +H
Sbjct: 218 EQIEQSVHFVDK-KRKRELLSQMIGEGDWKQVLVFTRTKHGANHLAEQLNKDGITAAAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + GRI++LVATD+AARG+D+ + HV NY+LP PEDYVHRIGRT
Sbjct: 277 GNKSQGARTRALADFKDGRIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
GRA R G A+SLV E ++ IER K++IP + G+EP I+
Sbjct: 337 GRAERTGEAISLVCVDEHKLLRDIERLLKREIPRIALPGYEPDPTIKA 384
>gi|389876606|ref|YP_006370171.1| DEAD/DEAH box helicase [Tistrella mobilis KA081020-065]
gi|388527390|gb|AFK52587.1| DEAD/DEAH box helicase domain-containing protein [Tistrella mobilis
KA081020-065]
Length = 528
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 164/394 (41%), Positives = 245/394 (62%), Gaps = 24/394 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
NF +GL E +L+AL + GY PT +QEQAIP ++GRDL+ +QTG+GKTAAF LP L+
Sbjct: 3 NFSELGLSETLLRALDQAGYVTPTPIQEQAIPHLVAGRDLLGIAQTGTGKTAAFALPILN 62
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ A+ +N+ N+ P + R L+L PTRELA Q+ + Y
Sbjct: 63 RIAADRNR-----ANM-----------------PGRTRCLILAPTRELAAQIADNIKTYA 100
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+M+ A+ + G Q++ ++R +IL+ATPGRL+DH++SG + +++VLDEA
Sbjct: 101 RHMRVHVAVVVGGVS-AGPQIRAIARGLDILVATPGRLVDHLDSGVLKLDRTEVVVLDEA 159
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
D MLD+GFI I +I+ P RQ++ FSAT+ +G +A + +DP+ + V + +
Sbjct: 160 DHMLDLGFIIPIRRILAKLPTRRQSLFFSATMPKEIGALAGEMLRDPIEVSVTPVATTAE 219
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
+ Q ++ ++ + L++ LL + V +A+VFT TKR AD +A L ++G AA +HG
Sbjct: 220 RVEQRVVRIEPARKRGVLIE-LLESEGVHRALVFTRTKRGADRVAHDLEVAGLPAAAIHG 278
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ Q+ R R L R GR++ILVATD+AARGIDV ++HVFNY+LP PE YVHRIGRT
Sbjct: 279 NKSQSQRERALGGFRDGRVRILVATDIAARGIDVSGVSHVFNYELPDVPESYVHRIGRTA 338
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIE 395
RAG G A++L E ++ IER T+Q +PI+
Sbjct: 339 RAGAEGIAITLCADDELGLLRDIERLTRQTLPID 372
>gi|170683710|ref|YP_001742900.1| ATP-dependent RNA helicase RhlE [Escherichia coli SMS-3-5]
gi|422827999|ref|ZP_16876172.1| ATP-dependent RNA helicase rhlE [Escherichia coli B093]
gi|170521428|gb|ACB19606.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli SMS-3-5]
gi|371615757|gb|EHO04145.1| ATP-dependent RNA helicase rhlE [Escherichia coli B093]
Length = 454
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|422765321|ref|ZP_16819048.1| DEAD/DEAH box helicase [Escherichia coli E1520]
gi|323938152|gb|EGB34412.1| DEAD/DEAH box helicase [Escherichia coli E1520]
Length = 454
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSNDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|146338133|ref|YP_001203181.1| ATP-dependent RNA helicase [Bradyrhizobium sp. ORS 278]
gi|146190939|emb|CAL74944.1| Putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. ORS 278]
Length = 473
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 169/395 (42%), Positives = 243/395 (61%), Gaps = 26/395 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F+ L + + +AL + YT PT +Q Q IP A+ GRD+I +QTG+GKTA+F LP LH
Sbjct: 3 SFQDFNLADALTRALKEENYTTPTPIQAQTIPLALQGRDVIGIAQTGTGKTASFALPILH 62
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ + R++ +P R+LVL+PTREL+ Q+ + YG
Sbjct: 63 RLL-----------------------ENRIKPQPKTARVLVLSPTRELSGQILDSFNTYG 99
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+++ ++I GG+P RQ++ + ++L+ATPGRL+D + + SH++ LVLDEA
Sbjct: 100 RHIRLSSTLAI-GGVPMGRQVRAVMPGVDVLVATPGRLLDLVQGNALKLSHVEFLVLDEA 158
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGFINDI KIV P+ RQT+ FSAT+ + +A+++ +DP + V + +
Sbjct: 159 DRMLDMGFINDIRKIVAKLPIKRQTLFFSATMPKDIAELADSMLRDPARVAVTPVSSTVE 218
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
I Q ++ VD K LL LL+++ V +A+VFT TK AD + L +G A +HG
Sbjct: 219 RIAQRVIQVDHSA-KPSLLAQLLKNEPVNRALVFTRTKHGADKVVKGLEKAGIPAQAIHG 277
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ QN R RTL R G I+ LVATD+AARGIDV ++HV N+DLP PE YVHRIGRT
Sbjct: 278 NKSQNHRERTLAAFRTGEIRTLVATDIAARGIDVDGVSHVVNFDLPNVPETYVHRIGRTA 337
Query: 362 RAGRNGFAVSLVNHAERMN-IKKIERFTKQQIPIE 395
RAG +G A+SLV A+ M+ ++ IER TK +P E
Sbjct: 338 RAGADGVAISLVAGADEMSYLRDIERLTKTTLPRE 372
>gi|229526174|ref|ZP_04415578.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae bv. albensis
VL426]
gi|229336332|gb|EEO01350.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae bv. albensis
VL426]
Length = 464
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 170/402 (42%), Positives = 239/402 (59%), Gaps = 26/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S+GL +LKA+ + GY P+ +Q QAIPA ++G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
A K P ++ N Q R L+LTPTRELA Q+ Y
Sbjct: 61 ELLA----KGPKVRAN--------------------QVRALILTPTRELAAQIQDNVMLY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +K+ + GG+ QMQ + + +IL+ATPGRL+D N + F L+ILVLDE
Sbjct: 97 GRHLP-LKSAVVFGGVKINPQMQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ +LFSAT + +A+ + +P+ + V+
Sbjct: 156 ADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I + D+ K +L L+++ Q +VF TK A+ +A LN G AA +H
Sbjct: 216 RTVEQCI-YPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G ++ILVATD+AARGID+P + V N++LPK EDYVHRIGRT
Sbjct: 275 GNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G A+SLV+ E + IER T+ +P + GFEP
Sbjct: 335 GRAGEVGKAISLVSAIEAPELFAIERLTQALLPRVNLAGFEP 376
>gi|408792586|ref|ZP_11204196.1| DEAD/DEAH box helicase [Leptospira meyeri serovar Hardjo str. Went
5]
gi|408463996|gb|EKJ87721.1| DEAD/DEAH box helicase [Leptospira meyeri serovar Hardjo str. Went
5]
Length = 471
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 165/393 (41%), Positives = 238/393 (60%), Gaps = 25/393 (6%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F + L + KA+V+ GYTKPT +Q QAIP + DL+ +QTG+GKTAAF LP +H
Sbjct: 8 FSDLKLDRSIQKAVVETGYTKPTPIQIQAIPLLLDNHDLLGCAQTGTGKTAAFALPMIHN 67
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
S+ R + P QPR LVL PTRELA+QV + YG
Sbjct: 68 LIST-----------------------RAKPNPKQPRSLVLVPTRELAIQVHESFVLYGK 104
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
Y + I+ I GG+ Q + ++ ++L+ATPGRL+D MN ++ +L+I VLDEAD
Sbjct: 105 YTQ-IRTAVIFGGVGQNPQAKAIASGLDVLIATPGRLVDLMNQNLVSLKNLEIFVLDEAD 163
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLDMGFI+DI KI+ P RQ + FSAT+ + +A +I +P+ + + + +
Sbjct: 164 RMLDMGFIHDIRKIISYLPKRRQNLFFSATMPSEIEKLANSILVEPIRIDITPVSSTVEL 223
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
I+QS+++ + + K LL +L +DK + ++FT TK A+ I++ LN SG +HG+
Sbjct: 224 ISQSVMYTE-LADKKNLLLHLFKDKNFKKTIIFTKTKHGANKISELLNKSGIKTDVIHGN 282
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
Q+AR + LE+ R G+ + LVATD+AARGID+ ITHV NY++P PE YVHRIGRT R
Sbjct: 283 KSQSARQKALEDFRSGKNRALVATDLAARGIDIDDITHVINYEIPYVPETYVHRIGRTAR 342
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIE 395
AG+NG A+++ ER IK IE+ IP++
Sbjct: 343 AGKNGIAIAIAEADERSLIKDIEKVIGISIPVD 375
>gi|82776130|ref|YP_402477.1| ATP-dependent RNA helicase RhlE [Shigella dysenteriae Sd197]
gi|81240278|gb|ABB60988.1| putative ATP-dependent RNA helicase [Shigella dysenteriae Sd197]
Length = 454
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|432717836|ref|ZP_19952831.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE9]
gi|431265515|gb|ELF57079.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE9]
Length = 454
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|425287375|ref|ZP_18678299.1| ATP-dependent RNA helicase rhlE [Escherichia coli 3006]
gi|408218139|gb|EKI42372.1| ATP-dependent RNA helicase rhlE [Escherichia coli 3006]
Length = 454
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|389696462|ref|ZP_10184104.1| DNA/RNA helicase, superfamily II [Microvirga sp. WSM3557]
gi|388585268|gb|EIM25563.1| DNA/RNA helicase, superfamily II [Microvirga sp. WSM3557]
Length = 505
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 166/392 (42%), Positives = 238/392 (60%), Gaps = 25/392 (6%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F GL + +LKAL GY KPT +Q Q IP A+ GRD+ +QTG+GKTAAF LP LH+
Sbjct: 4 FTDFGLAQPILKALSAEGYEKPTPIQAQTIPYAMEGRDVCGIAQTGTGKTAAFALPILHR 63
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
LN N K R KP PR+LVL+PTREL+ Q+ + + YG
Sbjct: 64 --------------LNANP------KPR---KPKSPRVLVLSPTRELSGQIADSFKAYGR 100
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
++ + + GG+ RQ + L++ ++L+ATPGRLID ++ ++ ++ILVLDEAD
Sbjct: 101 NLR-LSTEVVFGGVTISRQEKALAQGVDVLVATPGRLIDLVDRRALSLRDIEILVLDEAD 159
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
+MLD+GFI+ +++IV P RQ++ FSAT+ + +A++ +DP + V + +
Sbjct: 160 QMLDLGFIHALKRIVTLLPKDRQSLFFSATMPKTISTLADSFLRDPAHVAVTPVATTAER 219
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
+ QS++FV K LL+ LLRD + + +VFT TK AD + L+ +G A +HG+
Sbjct: 220 VEQSVIFVQ-TNRKQVLLETLLRDPSIDRVLVFTRTKHGADKVVRGLDKAGIAGAAIHGN 278
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
Q R R L R G ++LVATD+AARGIDV +THV NYDLP PE YVHRIGRT R
Sbjct: 279 KSQPQRERALAGFRDGSCRVLVATDIAARGIDVEGVTHVINYDLPNVPESYVHRIGRTAR 338
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
AG G A+S N E+ +K IE+ T+ ++P+
Sbjct: 339 AGATGLAISFCNDEEKAYLKDIEKLTRLKVPV 370
>gi|417288603|ref|ZP_12075888.1| ATP-dependent RNA helicase RhlE [Escherichia coli TW07793]
gi|386247395|gb|EII93568.1| ATP-dependent RNA helicase RhlE [Escherichia coli TW07793]
Length = 453
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|204929853|ref|ZP_03220874.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|452120973|ref|YP_007471221.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
gi|204320847|gb|EDZ06048.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|451909977|gb|AGF81783.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
Length = 453
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 170/409 (41%), Positives = 245/409 (59%), Gaps = 26/409 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP-RMLVLTPTRELALQVTAATER 119
+ TH+ L K +P R L+LTPTRELA Q+
Sbjct: 61 QH---------------------LITHQ--LHAKGRRPVRALILTPTRELAAQIGENVRD 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++ILVLD
Sbjct: 98 YSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLD 156
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + ++PL ++V
Sbjct: 157 EADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTA 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+ +TQ + FVD K LL ++ Q +VFT TK A+ +A++LN G +A +
Sbjct: 217 SEQVTQHVHFVDK-KRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAI 275
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHRIGR
Sbjct: 276 HGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGR 335
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
TGRA G A+SLV E ++ IE+ K++IP G+EP I+
Sbjct: 336 TGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTPGYEPDPSIKA 384
>gi|229522888|ref|ZP_04412302.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TM 11079-80]
gi|419837028|ref|ZP_14360468.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-46B1]
gi|421343710|ref|ZP_15794114.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-43B1]
gi|423736517|ref|ZP_17709659.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-41B1]
gi|424010835|ref|ZP_17753728.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-44C1]
gi|229340105|gb|EEO05113.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TM 11079-80]
gi|395942277|gb|EJH52954.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-43B1]
gi|408626743|gb|EKK99580.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-41B1]
gi|408857578|gb|EKL97266.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-46B1]
gi|408860728|gb|EKM00346.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-44C1]
Length = 464
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 170/406 (41%), Positives = 241/406 (59%), Gaps = 26/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S+GL +LKA+ + GY P+ +Q QAIPA ++G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
A K P ++ N Q R L+LTPTRELA Q+ Y
Sbjct: 61 ELLA----KGPKVRAN--------------------QVRALILTPTRELAAQIQDNVMLY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +K+ + GG+ QMQ + + +IL+ATPGRL+D N + F L+ILVLDE
Sbjct: 97 GRHLP-LKSAVVFGGVKINPQMQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ +LFSAT + +A+ + +P+ + V+
Sbjct: 156 ADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I + D+ K +L L+++ Q +VF TK A+ +A LN G AA +H
Sbjct: 216 RTVEQCI-YPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G ++ILVATD+AARGID+P + V N++LPK EDYVHRIGRT
Sbjct: 275 GNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQLPQVMNFELPKIAEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
GRAG G A+SLV+ E + IER T+ +P + GFEP ++
Sbjct: 335 GRAGEVGKAISLVSAIEAPELFAIERLTQALLPRVNLAGFEPTNQL 380
>gi|229527823|ref|ZP_04417214.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 12129(1)]
gi|229334185|gb|EEN99670.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 12129(1)]
Length = 464
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 170/406 (41%), Positives = 241/406 (59%), Gaps = 26/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S+GL +LKA+ + GY P+ +Q QAIPA ++G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
A K P ++ N Q R L+LTPTRELA Q+ Y
Sbjct: 61 ELLA----KGPKVRAN--------------------QVRALILTPTRELAAQIQDNVMLY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +K+ + GG+ QMQ + + +IL+ATPGRL+D N + F L+ILVLDE
Sbjct: 97 GRHLP-LKSAVVFGGVKINPQMQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ +LFSAT + +A+ + +P+ + V+
Sbjct: 156 ADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I + D+ K +L L+++ Q +VF TK A+ +A LN G AA +H
Sbjct: 216 RTVEQCI-YPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G ++ILVATD+AARGID+P + V N++LPK EDYVHRIGRT
Sbjct: 275 GNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
GRAG G A+SLV+ E + IER T+ +P + GFEP ++
Sbjct: 335 GRAGEVGKAISLVSAIEAPELFAIERLTQALLPRVNLAGFEPTNQL 380
>gi|84516715|ref|ZP_01004073.1| ATP-dependent RNA helicase RhlE [Loktanella vestfoldensis SKA53]
gi|84509183|gb|EAQ05642.1| ATP-dependent RNA helicase RhlE [Loktanella vestfoldensis SKA53]
Length = 498
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 166/399 (41%), Positives = 236/399 (59%), Gaps = 34/399 (8%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F + L VLKA+ + GY PT +Q+ AIP A+ GRD++ +QTG+GKTAAF LP
Sbjct: 4 FSDMNLDPKVLKAVAETGYDTPTPIQDGAIPPALEGRDVLGIAQTGTGKTAAFTLP---- 59
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
+ T R R + PR LVL PTRELA QV + Y
Sbjct: 60 ---------------------MITLLGRGRARARMPRSLVLAPTRELAAQVAENFDTYAK 98
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
Y K KA+ ++GG + Q +L+ + ++L+ATPGRL+DH+ GK+ + ++I+V+DEAD
Sbjct: 99 YTKLTKAL-LIGGTSFKDQDKLIDKGVDVLIATPGRLLDHLERGKLILTDVKIMVVDEAD 157
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLDMGFI DIE+I TP TRQT+ FSAT+ + + +P ++V N
Sbjct: 158 RMLDMGFIPDIEEIFKRTPFTRQTLFFSATMAPEIERITNTFLSNPAKVEVARAATTNVN 217
Query: 243 ITQSILF------VDDILHKNRLLDYLL--RDKRVGQAVVFTATKRDADIIADRLNISGF 294
I Q ++ + + K LL L+ A++F K D D++A LN G+
Sbjct: 218 IKQGVVMFRASAKLREATEKRALLRALINAEGDACSNAIIFCNRKADVDVVAKSLNKYGY 277
Query: 295 LAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYV 354
AAP+HGDL Q+ R RTLE+ R +++ LVA+DVAARG+D+PA+THVFN+D+P EDYV
Sbjct: 278 DAAPIHGDLEQSHRTRTLESFRDNKLRFLVASDVAARGLDIPAVTHVFNFDVPSHAEDYV 337
Query: 355 HRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIP 393
HRIGRTGRAGR+G A+ + + + N++ +ER + IP
Sbjct: 338 HRIGRTGRAGRSGVAIMICSGRDEKNLEDVERLVQNPIP 376
>gi|432873837|ref|ZP_20093105.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE147]
gi|431404432|gb|ELG87683.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE147]
Length = 454
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|34496458|ref|NP_900673.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
gi|34102311|gb|AAQ58677.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
Length = 441
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 171/404 (42%), Positives = 242/404 (59%), Gaps = 26/404 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F +GL +L+A+ + GY++PT +QE+AIP +SGRDL+ ++QTG+GKTAAFMLP L
Sbjct: 1 MLFSELGLSPEILRAIDEQGYSQPTPIQEKAIPLVLSGRDLLAAAQTGTGKTAAFMLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPA-QP-RMLVLTPTRELALQVTAATE 118
+ +KK N + PA P R LVL+PTRELA Q+ +
Sbjct: 61 ER----------LKKFANTS------------VSPAMHPIRALVLSPTRELADQIGVNVQ 98
Query: 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
Y Y+ ++A ++ GG+ Q Q L R EIL+ATPGRL+DH+ + + +++LVL
Sbjct: 99 TYTKYLP-LRATTVFGGVNMDPQTQELRRGVEILIATPGRLLDHIQQKTVQLNKVEVLVL 157
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DE DRMLDMGFI DI KI+ P RQT+LFSAT + +A + P ++V
Sbjct: 158 DEGDRMLDMGFIQDIRKIMGMLPKERQTLLFSATFAPEIKRLAADFMHAPQTVEVARQNA 217
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ Q + VD+ K +LL +L+R + + Q +VF TK AD +A L G A
Sbjct: 218 TNDQVEQLVFQVDN-FKKRQLLAHLIRSREMSQVIVFCKTKISADQLARDLKRDGLDAEA 276
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HGD Q AR TL + G++++LVATDVAARG+D+ + +V N++LP PEDYVHRIG
Sbjct: 277 IHGDKTQGARLETLAGFKEGKLRVLVATDVAARGLDISELPYVVNFELPTSPEDYVHRIG 336
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
RTGRAG G A+SL+ E + IE+ TKQ + + ++GF P
Sbjct: 337 RTGRAGAKGIAISLMCPDESRQHEAIEKLTKQTLTPQSVDGFWP 380
>gi|432542177|ref|ZP_19779033.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE236]
gi|432547647|ref|ZP_19784434.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE237]
gi|432620931|ref|ZP_19856972.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE76]
gi|432814385|ref|ZP_20048175.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE115]
gi|431076431|gb|ELD83926.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE236]
gi|431083583|gb|ELD89755.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE237]
gi|431161397|gb|ELE61868.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE76]
gi|431366608|gb|ELG53105.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE115]
Length = 454
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|419911645|ref|ZP_14430115.1| ATP-dependent RNA helicase RhlE [Escherichia coli KD1]
gi|388393221|gb|EIL54610.1| ATP-dependent RNA helicase RhlE [Escherichia coli KD1]
Length = 452
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|422353494|ref|ZP_16434247.1| ATP-dependent RNA helicase RhlE, partial [Escherichia coli MS
117-3]
gi|324018526|gb|EGB87745.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 117-3]
Length = 442
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|331656814|ref|ZP_08357776.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA206]
gi|331682303|ref|ZP_08382922.1| ATP-dependent RNA helicase RhlE [Escherichia coli H299]
gi|450186646|ref|ZP_21889564.1| ATP-dependent RNA helicase RhlE [Escherichia coli SEPT362]
gi|331055062|gb|EGI27071.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA206]
gi|331079934|gb|EGI51113.1| ATP-dependent RNA helicase RhlE [Escherichia coli H299]
gi|449324165|gb|EMD14102.1| ATP-dependent RNA helicase RhlE [Escherichia coli SEPT362]
Length = 453
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|297579675|ref|ZP_06941602.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC385]
gi|297535321|gb|EFH74155.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC385]
Length = 464
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 170/402 (42%), Positives = 239/402 (59%), Gaps = 26/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S+GL +LKA+ + GY P+ +Q QAIPA ++G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
A K P ++ N Q R L+LTPTRELA Q+ Y
Sbjct: 61 ELLA----KGPKVRAN--------------------QVRALILTPTRELAAQIQDNVMLY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +K+ + GG+ QMQ + + +IL+ATPGRL+D N + F L+ILVLDE
Sbjct: 97 GRHLP-LKSAVVFGGVKINPQMQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ +LFSAT + +A+ + +P+ + V+
Sbjct: 156 ADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I + D+ K +L L+++ Q +VF TK A+ +A LN G AA +H
Sbjct: 216 RTVEQCI-YPADVKKKPAMLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G ++ILVATD+AARGID+P + V N++LPK EDYVHRIGRT
Sbjct: 275 GNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G A+SLV+ E + IER T+ +P + GFEP
Sbjct: 335 GRAGEVGKAISLVSAIEAPELFAIERLTQALLPRVNLAGFEP 376
>gi|26246770|ref|NP_752810.1| ATP-dependent RNA helicase RhlE [Escherichia coli CFT073]
gi|110641001|ref|YP_668729.1| ATP-dependent RNA helicase RhlE [Escherichia coli 536]
gi|191174652|ref|ZP_03036132.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli F11]
gi|222155523|ref|YP_002555662.1| ATP-dependent RNA helicase rhlE [Escherichia coli LF82]
gi|227884241|ref|ZP_04002046.1| ATP-dependent RNA helicase RhlE [Escherichia coli 83972]
gi|300939831|ref|ZP_07154469.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 21-1]
gi|300992077|ref|ZP_07179779.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 200-1]
gi|300993271|ref|ZP_07180318.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 45-1]
gi|301051284|ref|ZP_07198110.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 185-1]
gi|306812801|ref|ZP_07446994.1| ATP-dependent RNA helicase RhlE [Escherichia coli NC101]
gi|331646014|ref|ZP_08347117.1| ATP-dependent RNA helicase RhlE [Escherichia coli M605]
gi|386628337|ref|YP_006148057.1| ATP-dependent RNA helicase RhlE [Escherichia coli str. 'clone D
i2']
gi|386633257|ref|YP_006152976.1| ATP-dependent RNA helicase RhlE [Escherichia coli str. 'clone D
i14']
gi|386638150|ref|YP_006104948.1| ATP-dependent RNA helicase [Escherichia coli ABU 83972]
gi|387616054|ref|YP_006119076.1| ATP-dependent RNA helicase RhlE [Escherichia coli O83:H1 str. NRG
857C]
gi|416335171|ref|ZP_11671882.1| ATP-dependent RNA helicase RhlE [Escherichia coli WV_060327]
gi|417661322|ref|ZP_12310903.1| ATP-dependent RNA helicase RhlE [Escherichia coli AA86]
gi|419699658|ref|ZP_14227271.1| ATP-dependent RNA helicase RhlE [Escherichia coli SCI-07]
gi|422364701|ref|ZP_16445212.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 153-1]
gi|422379081|ref|ZP_16459284.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 57-2]
gi|432380422|ref|ZP_19623377.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE15]
gi|432386249|ref|ZP_19629145.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE16]
gi|432396679|ref|ZP_19639464.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE25]
gi|432405614|ref|ZP_19648334.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE28]
gi|432410799|ref|ZP_19653480.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE39]
gi|432430847|ref|ZP_19673290.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE187]
gi|432435375|ref|ZP_19677774.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE188]
gi|432455662|ref|ZP_19697861.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE201]
gi|432470167|ref|ZP_19712219.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE206]
gi|432494600|ref|ZP_19736416.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE214]
gi|432503439|ref|ZP_19745174.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE220]
gi|432512992|ref|ZP_19750227.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE224]
gi|432522884|ref|ZP_19760021.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE230]
gi|432567630|ref|ZP_19804155.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE53]
gi|432591850|ref|ZP_19828177.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE60]
gi|432606617|ref|ZP_19842810.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE67]
gi|432610468|ref|ZP_19846639.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE72]
gi|432645226|ref|ZP_19881025.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE86]
gi|432650259|ref|ZP_19886019.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE87]
gi|432655024|ref|ZP_19890736.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE93]
gi|432679216|ref|ZP_19914615.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE143]
gi|432698104|ref|ZP_19933270.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE169]
gi|432712457|ref|ZP_19947506.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE8]
gi|432722309|ref|ZP_19957232.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE17]
gi|432726851|ref|ZP_19961732.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE18]
gi|432731462|ref|ZP_19966298.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE45]
gi|432740537|ref|ZP_19975258.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE23]
gi|432744724|ref|ZP_19979423.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE43]
gi|432758541|ref|ZP_19993042.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE46]
gi|432782638|ref|ZP_20016822.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE63]
gi|432843102|ref|ZP_20076437.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE141]
gi|432893524|ref|ZP_20105536.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE165]
gi|432903336|ref|ZP_20112802.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE194]
gi|432942848|ref|ZP_20140002.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE183]
gi|432970909|ref|ZP_20159787.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE207]
gi|432977456|ref|ZP_20166279.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE209]
gi|432984426|ref|ZP_20173163.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE215]
gi|432989850|ref|ZP_20178516.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE217]
gi|432994527|ref|ZP_20183141.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE218]
gi|432998946|ref|ZP_20187484.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE223]
gi|433037791|ref|ZP_20225403.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE113]
gi|433057090|ref|ZP_20244173.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE124]
gi|433076958|ref|ZP_20263520.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE131]
gi|433081679|ref|ZP_20268153.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE133]
gi|433086407|ref|ZP_20272802.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE137]
gi|433100308|ref|ZP_20286415.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE145]
gi|433110072|ref|ZP_20295946.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE150]
gi|433114682|ref|ZP_20300496.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE153]
gi|433124341|ref|ZP_20309928.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE160]
gi|433138401|ref|ZP_20323685.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE167]
gi|433143374|ref|ZP_20328540.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE168]
gi|433148188|ref|ZP_20333252.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE174]
gi|433187583|ref|ZP_20371700.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE88]
gi|433197356|ref|ZP_20381279.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE94]
gi|433206916|ref|ZP_20390611.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE97]
gi|433211664|ref|ZP_20395277.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE99]
gi|442606347|ref|ZP_21021147.1| ATP-dependent RNA helicase RhlE [Escherichia coli Nissle 1917]
gi|26107169|gb|AAN79353.1|AE016757_257 Putative ATP-dependent RNA helicase rhlE [Escherichia coli CFT073]
gi|110342593|gb|ABG68830.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 536]
gi|190905071|gb|EDV64730.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli F11]
gi|222032528|emb|CAP75267.1| ATP-dependent RNA helicase rhlE [Escherichia coli LF82]
gi|227838993|gb|EEJ49459.1| ATP-dependent RNA helicase RhlE [Escherichia coli 83972]
gi|300297043|gb|EFJ53428.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 185-1]
gi|300305406|gb|EFJ59926.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 200-1]
gi|300406679|gb|EFJ90217.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 45-1]
gi|300455363|gb|EFK18856.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 21-1]
gi|305853564|gb|EFM54003.1| ATP-dependent RNA helicase RhlE [Escherichia coli NC101]
gi|307552642|gb|ADN45417.1| ATP-dependent RNA helicase [Escherichia coli ABU 83972]
gi|312945315|gb|ADR26142.1| ATP-dependent RNA helicase RhlE [Escherichia coli O83:H1 str. NRG
857C]
gi|315292604|gb|EFU51956.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 153-1]
gi|320196708|gb|EFW71331.1| ATP-dependent RNA helicase RhlE [Escherichia coli WV_060327]
gi|324009618|gb|EGB78837.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 57-2]
gi|330910540|gb|EGH39050.1| ATP-dependent RNA helicase RhlE [Escherichia coli AA86]
gi|331044766|gb|EGI16893.1| ATP-dependent RNA helicase RhlE [Escherichia coli M605]
gi|355419236|gb|AER83433.1| ATP-dependent RNA helicase RhlE [Escherichia coli str. 'clone D
i2']
gi|355424156|gb|AER88352.1| ATP-dependent RNA helicase RhlE [Escherichia coli str. 'clone D
i14']
gi|380349203|gb|EIA37478.1| ATP-dependent RNA helicase RhlE [Escherichia coli SCI-07]
gi|430909170|gb|ELC30555.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE16]
gi|430910737|gb|ELC32037.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE15]
gi|430916999|gb|ELC38047.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE25]
gi|430931768|gb|ELC52202.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE28]
gi|430937297|gb|ELC57552.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE39]
gi|430955287|gb|ELC74070.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE187]
gi|430965703|gb|ELC83112.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE188]
gi|430984389|gb|ELD01012.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE201]
gi|430999345|gb|ELD15427.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE206]
gi|431027205|gb|ELD40268.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE214]
gi|431041485|gb|ELD51985.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE220]
gi|431044031|gb|ELD54311.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE224]
gi|431054194|gb|ELD63775.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE230]
gi|431102578|gb|ELE07392.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE53]
gi|431131766|gb|ELE33782.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE60]
gi|431140069|gb|ELE41846.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE67]
gi|431150809|gb|ELE51851.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE72]
gi|431182457|gb|ELE82274.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE86]
gi|431192815|gb|ELE92159.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE87]
gi|431193934|gb|ELE93204.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE93]
gi|431224276|gb|ELF21503.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE143]
gi|431246244|gb|ELF40510.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE169]
gi|431258590|gb|ELF51353.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE8]
gi|431267386|gb|ELF58903.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE17]
gi|431274639|gb|ELF65684.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE18]
gi|431277717|gb|ELF68721.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE45]
gi|431285128|gb|ELF75964.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE23]
gi|431294200|gb|ELF84380.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE43]
gi|431311130|gb|ELF99308.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE46]
gi|431331037|gb|ELG18300.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE63]
gi|431396873|gb|ELG80335.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE141]
gi|431424504|gb|ELH06600.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE165]
gi|431435780|gb|ELH17388.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE194]
gi|431452735|gb|ELH33146.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE183]
gi|431480967|gb|ELH60681.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE209]
gi|431486046|gb|ELH65703.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE207]
gi|431496725|gb|ELH76303.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE217]
gi|431505005|gb|ELH83628.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE215]
gi|431508740|gb|ELH87011.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE218]
gi|431513286|gb|ELH91369.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE223]
gi|431553961|gb|ELI27843.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE113]
gi|431573658|gb|ELI46455.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE124]
gi|431600236|gb|ELI69908.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE131]
gi|431605514|gb|ELI74903.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE133]
gi|431609064|gb|ELI78397.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE137]
gi|431621765|gb|ELI90555.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE145]
gi|431630708|gb|ELI99036.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE150]
gi|431636392|gb|ELJ04523.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE153]
gi|431649148|gb|ELJ16507.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE160]
gi|431664579|gb|ELJ31313.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE167]
gi|431665476|gb|ELJ32194.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE168]
gi|431676301|gb|ELJ42421.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE174]
gi|431708583|gb|ELJ73091.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE88]
gi|431725002|gb|ELJ88915.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE94]
gi|431732132|gb|ELJ95588.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE97]
gi|431735862|gb|ELJ99206.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE99]
gi|441712423|emb|CCQ07124.1| ATP-dependent RNA helicase RhlE [Escherichia coli Nissle 1917]
Length = 453
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|315637497|ref|ZP_07892707.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri JV22]
gi|315478215|gb|EFU68938.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri JV22]
Length = 435
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 182/461 (39%), Positives = 265/461 (57%), Gaps = 39/461 (8%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F ++GL + +L+A+ + GYT PT +Q ++IP +S +D++ ++QTG+GKTA F LP L
Sbjct: 1 MSFSNLGLCKEILRAIKEEGYTTPTPIQSKSIPVILSKKDVLAAAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ S L+ K Q R L+LTPTRELA QV + E Y
Sbjct: 61 QRLKDS-----------------------NLKDKKTQVRALILTPTRELAAQVAQSVETY 97
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ K+ I GG+ Q LL + +I++ATPGRL+D ++ ++ S ++ LVLDE
Sbjct: 98 GKYLP-FKSAVIFGGVGINPQKALLKKGVDIIIATPGRLLDLISQDSLDLSKIEFLVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFINDI+KI+ P RQ +LFSAT + +A+ + K P++++V+
Sbjct: 157 ADRMLDMGFINDIKKILAILPKQRQNLLFSATFSNEIKKLADGLLKSPVLVEVSKANSAS 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ Q + VD K LL +L+ Q +VFT TK A+ +++ L +A +H
Sbjct: 217 FKVEQVVHHVDKD-RKKELLLHLVNKNSWQQVLVFTRTKHGANKLSEALVKDKITSAAIH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + L++ + G++++LVATD+AARGID+ + HV N++LP EDYVHRIGRT
Sbjct: 276 GNKSQGARTKALDDFKNGKVRVLVATDIAARGIDIEQLPHVVNFELPNVAEDYVHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRYRFNNNN- 419
GRAG NG A+SLV E + IER KQ+I INGF+ I+ R N N
Sbjct: 336 GRAGNNGIAISLVCVDEHEYLFGIERLIKQKIKKVEINGFKVNPNIKAEPIGNRSNRGNK 395
Query: 420 ---------WKTHNINKSNITK--RFYRQIKKTSISASSKN 449
K N N S+ TK RF + ++T + SSKN
Sbjct: 396 ANNSNQNRKVKPKNENSSSSTKPRRFASKNRRT--NTSSKN 434
>gi|121604151|ref|YP_981480.1| DEAD/DEAH box helicase [Polaromonas naphthalenivorans CJ2]
gi|120593120|gb|ABM36559.1| DEAD/DEAH box helicase domain protein [Polaromonas
naphthalenivorans CJ2]
Length = 571
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 172/401 (42%), Positives = 245/401 (61%), Gaps = 22/401 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+ + L +LKA+++ GY PT +Q QAIPA ++G DL+ +QTG+GKTAAF LP L
Sbjct: 1 MKFEELNLAPAILKAVLEQGYDTPTPIQAQAIPAVLAGGDLLGGAQTGTGKTAAFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ ++ P + N R L++TPTRELA QV + Y
Sbjct: 61 QRLSTE----PRLTNRRGVNAV----------------RALIMTPTRELAAQVEESVRTY 100
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ + ++ + GG+ Q++ L R +IL+ATPGRL+DH + G ++ S +QIL+LDE
Sbjct: 101 GKYLD-LTSMVMFGGVGMGAQIEKLRRGVDILVATPGRLLDHASQGTLDLSQVQILILDE 159
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI+K++ P +QT+LFSAT + +A + ++PL ++V
Sbjct: 160 ADRMLDMGFIHDIKKVLALVPKQKQTLLFSATFSDEIRELANGLLRNPLSIQVTPRNTTV 219
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ ITQ+I V K LL +++ + Q +VFT TK A+ +A+ L +G A LH
Sbjct: 220 QRITQTIHPVGRS-KKKALLTHIINEHNWSQVLVFTRTKFGANNVAEHLTKAGIPAMALH 278
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + L+ + G I+ LVATD+AARGID+ + HV NY++P EDYVHRIGRT
Sbjct: 279 GNKSQTARTQALQGFKNGDIRALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRT 338
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
GRAG +G AVSLV E ++ IERFTKQ I V+ GFE
Sbjct: 339 GRAGNSGQAVSLVCLDEEGFMQDIERFTKQNIENIVVPGFE 379
>gi|301024520|ref|ZP_07188196.1| ATP-dependent RNA helicase RhlE, partial [Escherichia coli MS
196-1]
gi|299880373|gb|EFI88584.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 196-1]
Length = 438
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|432615625|ref|ZP_19851752.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE75]
gi|431156800|gb|ELE57466.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE75]
Length = 453
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|15800548|ref|NP_286560.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
EDL933]
gi|15830129|ref|NP_308902.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
Sakai]
gi|168752016|ref|ZP_02777038.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4113]
gi|168756582|ref|ZP_02781589.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4401]
gi|168764299|ref|ZP_02789306.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4501]
gi|168767298|ref|ZP_02792305.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4486]
gi|168777223|ref|ZP_02802230.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4196]
gi|168779341|ref|ZP_02804348.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4076]
gi|168787011|ref|ZP_02812018.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC869]
gi|168799929|ref|ZP_02824936.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC508]
gi|195936837|ref|ZP_03082219.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
EC4024]
gi|208808862|ref|ZP_03251199.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4206]
gi|208814983|ref|ZP_03256162.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4045]
gi|208822342|ref|ZP_03262661.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4042]
gi|209396359|ref|YP_002269466.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
EC4115]
gi|217324654|ref|ZP_03440738.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. TW14588]
gi|254791991|ref|YP_003076828.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
TW14359]
gi|261225444|ref|ZP_05939725.1| RNA helicase [Escherichia coli O157:H7 str. FRIK2000]
gi|261258587|ref|ZP_05951120.1| RNA helicase [Escherichia coli O157:H7 str. FRIK966]
gi|291281794|ref|YP_003498612.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
CB9615]
gi|293414075|ref|ZP_06656724.1| ATP-dependent RNA helicase RhlE [Escherichia coli B185]
gi|387505903|ref|YP_006158159.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
RM12579]
gi|387881409|ref|YP_006311711.1| ATP-dependent RNA helicase RhlE [Escherichia coli Xuzhou21]
gi|416309552|ref|ZP_11655924.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
1044]
gi|416317432|ref|ZP_11660473.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
EC1212]
gi|416332189|ref|ZP_11670268.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
1125]
gi|416781898|ref|ZP_11877367.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
G5101]
gi|416793131|ref|ZP_11882292.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H- str.
493-89]
gi|416804396|ref|ZP_11887151.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H- str. H
2687]
gi|416815421|ref|ZP_11891857.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
3256-97]
gi|416825253|ref|ZP_11896441.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str. USDA
5905]
gi|416836098|ref|ZP_11901713.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
LSU-61]
gi|419044083|ref|ZP_13591054.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3A]
gi|419049436|ref|ZP_13596352.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3B]
gi|419055518|ref|ZP_13602371.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3C]
gi|419061090|ref|ZP_13607869.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3D]
gi|419067186|ref|ZP_13613661.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3E]
gi|419074099|ref|ZP_13619667.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3F]
gi|419079198|ref|ZP_13624680.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4A]
gi|419084835|ref|ZP_13630244.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4B]
gi|419091085|ref|ZP_13636402.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4C]
gi|419096771|ref|ZP_13642013.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4D]
gi|419102575|ref|ZP_13647740.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4E]
gi|419107936|ref|ZP_13653045.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4F]
gi|419113710|ref|ZP_13658740.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC5A]
gi|419119348|ref|ZP_13664326.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC5B]
gi|419125059|ref|ZP_13669956.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC5C]
gi|419130595|ref|ZP_13675442.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC5D]
gi|419135320|ref|ZP_13680126.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC5E]
gi|420268096|ref|ZP_14770500.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA22]
gi|420273875|ref|ZP_14776207.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA40]
gi|420279271|ref|ZP_14781536.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW06591]
gi|420285269|ref|ZP_14787484.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW10246]
gi|420290983|ref|ZP_14793146.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW11039]
gi|420296582|ref|ZP_14798675.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW09109]
gi|420302895|ref|ZP_14804921.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW10119]
gi|420308059|ref|ZP_14810031.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1738]
gi|420313779|ref|ZP_14815684.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1734]
gi|421811066|ref|ZP_16246865.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.0416]
gi|421817148|ref|ZP_16252703.1| ATP-dependent RNA helicase rhlE [Escherichia coli 10.0821]
gi|421822551|ref|ZP_16257988.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK920]
gi|421829288|ref|ZP_16264615.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA7]
gi|423664723|ref|ZP_17639886.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA31]
gi|424082066|ref|ZP_17818917.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA517]
gi|424088699|ref|ZP_17824945.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK1996]
gi|424108130|ref|ZP_17842696.1| ATP-dependent RNA helicase rhlE [Escherichia coli 93-001]
gi|424114123|ref|ZP_17848259.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA3]
gi|424120181|ref|ZP_17853874.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA5]
gi|424126420|ref|ZP_17859615.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA9]
gi|424145511|ref|ZP_17877271.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA15]
gi|424151642|ref|ZP_17882889.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA24]
gi|424190135|ref|ZP_17888328.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA25]
gi|424271705|ref|ZP_17894236.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA28]
gi|424425322|ref|ZP_17899959.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA32]
gi|424460367|ref|ZP_17911281.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA39]
gi|424473404|ref|ZP_17923064.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA42]
gi|424479335|ref|ZP_17928574.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW07945]
gi|424485404|ref|ZP_17934260.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW09098]
gi|424491576|ref|ZP_17939919.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW09195]
gi|424498624|ref|ZP_17945886.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4203]
gi|424504858|ref|ZP_17951619.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4196]
gi|424511106|ref|ZP_17957321.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW14313]
gi|424518644|ref|ZP_17963068.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW14301]
gi|424524503|ref|ZP_17968517.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4421]
gi|424530707|ref|ZP_17974322.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4422]
gi|424536684|ref|ZP_17979934.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4013]
gi|424542601|ref|ZP_17985401.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4402]
gi|424548920|ref|ZP_17991111.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4439]
gi|424555167|ref|ZP_17996880.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4436]
gi|424561523|ref|ZP_18002803.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4437]
gi|424573744|ref|ZP_18014155.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1845]
gi|424579693|ref|ZP_18019614.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1863]
gi|425096364|ref|ZP_18499377.1| ATP-dependent RNA helicase rhlE [Escherichia coli 3.4870]
gi|425102508|ref|ZP_18505148.1| ATP-dependent RNA helicase rhlE [Escherichia coli 5.2239]
gi|425108313|ref|ZP_18510551.1| ATP-dependent RNA helicase rhlE [Escherichia coli 6.0172]
gi|425124149|ref|ZP_18525707.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.0586]
gi|425130179|ref|ZP_18531268.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.2524]
gi|425136543|ref|ZP_18537257.1| ATP-dependent RNA helicase rhlE [Escherichia coli 10.0833]
gi|425148733|ref|ZP_18548610.1| ATP-dependent RNA helicase rhlE [Escherichia coli 88.0221]
gi|425154337|ref|ZP_18553879.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA34]
gi|425160784|ref|ZP_18559955.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA506]
gi|425166310|ref|ZP_18565111.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA507]
gi|425172598|ref|ZP_18570987.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA504]
gi|425178488|ref|ZP_18576530.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK1999]
gi|425191392|ref|ZP_18588508.1| ATP-dependent RNA helicase rhlE [Escherichia coli NE1487]
gi|425197701|ref|ZP_18594343.1| ATP-dependent RNA helicase rhlE [Escherichia coli NE037]
gi|425204368|ref|ZP_18600488.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK2001]
gi|425210121|ref|ZP_18605847.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA4]
gi|425216172|ref|ZP_18611477.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA23]
gi|425222753|ref|ZP_18617595.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA49]
gi|425228981|ref|ZP_18623364.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA45]
gi|425235284|ref|ZP_18629238.1| ATP-dependent RNA helicase rhlE [Escherichia coli TT12B]
gi|425241281|ref|ZP_18634909.1| ATP-dependent RNA helicase rhlE [Escherichia coli MA6]
gi|425247409|ref|ZP_18640604.1| ATP-dependent RNA helicase rhlE [Escherichia coli 5905]
gi|425253144|ref|ZP_18646003.1| ATP-dependent RNA helicase rhlE [Escherichia coli CB7326]
gi|425259420|ref|ZP_18651779.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC96038]
gi|425265567|ref|ZP_18657468.1| ATP-dependent RNA helicase rhlE [Escherichia coli 5412]
gi|425292999|ref|ZP_18683570.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA38]
gi|425315656|ref|ZP_18704719.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1736]
gi|425327915|ref|ZP_18716122.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1846]
gi|425334099|ref|ZP_18721803.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1847]
gi|425340513|ref|ZP_18727738.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1848]
gi|425352617|ref|ZP_18738981.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1850]
gi|425358604|ref|ZP_18744561.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1856]
gi|425364714|ref|ZP_18750242.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1862]
gi|425371162|ref|ZP_18756108.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1864]
gi|425383958|ref|ZP_18767821.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1866]
gi|425390648|ref|ZP_18774088.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1868]
gi|425396767|ref|ZP_18779796.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1869]
gi|425402754|ref|ZP_18785345.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1870]
gi|425409293|ref|ZP_18791431.1| ATP-dependent RNA helicase rhlE [Escherichia coli NE098]
gi|425415574|ref|ZP_18797194.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK523]
gi|425426707|ref|ZP_18807746.1| ATP-dependent RNA helicase rhlE [Escherichia coli 0.1304]
gi|428951536|ref|ZP_19023643.1| ATP-dependent RNA helicase rhlE [Escherichia coli 88.1042]
gi|428957401|ref|ZP_19029068.1| ATP-dependent RNA helicase rhlE [Escherichia coli 89.0511]
gi|428963723|ref|ZP_19034884.1| ATP-dependent RNA helicase rhlE [Escherichia coli 90.0091]
gi|428969936|ref|ZP_19040549.1| ATP-dependent RNA helicase rhlE [Escherichia coli 90.0039]
gi|428976421|ref|ZP_19046575.1| ATP-dependent RNA helicase rhlE [Escherichia coli 90.2281]
gi|428982032|ref|ZP_19051749.1| ATP-dependent RNA helicase rhlE [Escherichia coli 93.0055]
gi|428988330|ref|ZP_19057597.1| ATP-dependent RNA helicase rhlE [Escherichia coli 93.0056]
gi|428994131|ref|ZP_19063022.1| ATP-dependent RNA helicase rhlE [Escherichia coli 94.0618]
gi|429000267|ref|ZP_19068753.1| ATP-dependent RNA helicase rhlE [Escherichia coli 95.0183]
gi|429006446|ref|ZP_19074338.1| ATP-dependent RNA helicase rhlE [Escherichia coli 95.1288]
gi|429012785|ref|ZP_19080022.1| ATP-dependent RNA helicase rhlE [Escherichia coli 95.0943]
gi|429019038|ref|ZP_19085803.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0428]
gi|429031042|ref|ZP_19096893.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0939]
gi|429037193|ref|ZP_19102617.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0932]
gi|429043163|ref|ZP_19108143.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0107]
gi|429048882|ref|ZP_19113535.1| ATP-dependent RNA helicase rhlE [Escherichia coli 97.0003]
gi|429054278|ref|ZP_19118758.1| ATP-dependent RNA helicase rhlE [Escherichia coli 97.1742]
gi|429059931|ref|ZP_19124063.1| ATP-dependent RNA helicase rhlE [Escherichia coli 97.0007]
gi|429065437|ref|ZP_19129277.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0672]
gi|429071962|ref|ZP_19135308.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0678]
gi|429077288|ref|ZP_19140496.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0713]
gi|429824529|ref|ZP_19355999.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0109]
gi|429830882|ref|ZP_19361698.1| ATP-dependent RNA helicase rhlE [Escherichia coli 97.0010]
gi|444923221|ref|ZP_21242900.1| ATP-dependent RNA helicase rhlE [Escherichia coli 09BKT078844]
gi|444929524|ref|ZP_21248665.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0814]
gi|444934814|ref|ZP_21253742.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0815]
gi|444940413|ref|ZP_21259049.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0816]
gi|444945962|ref|ZP_21264373.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0839]
gi|444951558|ref|ZP_21269771.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0848]
gi|444957033|ref|ZP_21275021.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1753]
gi|444962292|ref|ZP_21280031.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1775]
gi|444973536|ref|ZP_21290805.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1805]
gi|444979084|ref|ZP_21296069.1| ATP-dependent RNA helicase rhlE [Escherichia coli ATCC 700728]
gi|444984373|ref|ZP_21301233.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA11]
gi|444989619|ref|ZP_21306350.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA19]
gi|444994964|ref|ZP_21311552.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA13]
gi|445000476|ref|ZP_21316930.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA2]
gi|445005935|ref|ZP_21322265.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA47]
gi|445011046|ref|ZP_21327230.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA48]
gi|445016880|ref|ZP_21332922.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA8]
gi|445022315|ref|ZP_21338229.1| ATP-dependent RNA helicase rhlE [Escherichia coli 7.1982]
gi|445027574|ref|ZP_21343342.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1781]
gi|445033074|ref|ZP_21348687.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1762]
gi|445038764|ref|ZP_21354226.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA35]
gi|445044065|ref|ZP_21359392.1| ATP-dependent RNA helicase rhlE [Escherichia coli 3.4880]
gi|445049558|ref|ZP_21364714.1| ATP-dependent RNA helicase rhlE [Escherichia coli 95.0083]
gi|445055210|ref|ZP_21370151.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0670]
gi|452970952|ref|ZP_21969179.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
EC4009]
gi|12513789|gb|AAG55168.1|AE005260_7 putative ATP-dependent RNA helicase [Escherichia coli O157:H7 str.
EDL933]
gi|13360334|dbj|BAB34298.1| putative ATP-dependent RNA helicase [Escherichia coli O157:H7 str.
Sakai]
gi|187767485|gb|EDU31329.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4196]
gi|188014049|gb|EDU52171.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4113]
gi|189002895|gb|EDU71881.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4076]
gi|189356291|gb|EDU74710.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4401]
gi|189363536|gb|EDU81955.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4486]
gi|189365692|gb|EDU84108.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4501]
gi|189373064|gb|EDU91480.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC869]
gi|189377707|gb|EDU96123.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC508]
gi|208728663|gb|EDZ78264.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4206]
gi|208731631|gb|EDZ80319.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4045]
gi|208737827|gb|EDZ85510.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4042]
gi|209157759|gb|ACI35192.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4115]
gi|209775908|gb|ACI86266.1| putative ATP-dependent RNA helicase [Escherichia coli]
gi|209775910|gb|ACI86267.1| putative ATP-dependent RNA helicase [Escherichia coli]
gi|209775912|gb|ACI86268.1| putative ATP-dependent RNA helicase [Escherichia coli]
gi|209775914|gb|ACI86269.1| putative ATP-dependent RNA helicase [Escherichia coli]
gi|209775916|gb|ACI86270.1| putative ATP-dependent RNA helicase [Escherichia coli]
gi|217320875|gb|EEC29299.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. TW14588]
gi|254591391|gb|ACT70752.1| RNA helicase [Escherichia coli O157:H7 str. TW14359]
gi|290761667|gb|ADD55628.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
CB9615]
gi|291434133|gb|EFF07106.1| ATP-dependent RNA helicase RhlE [Escherichia coli B185]
gi|320192728|gb|EFW67369.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
EC1212]
gi|320637659|gb|EFX07451.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
G5101]
gi|320642785|gb|EFX11986.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H- str.
493-89]
gi|320648241|gb|EFX16896.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H- str. H
2687]
gi|320654078|gb|EFX22146.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320659701|gb|EFX27257.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str. USDA
5905]
gi|320664171|gb|EFX31322.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
LSU-61]
gi|326338317|gb|EGD62146.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
1125]
gi|326346295|gb|EGD70033.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
1044]
gi|374357897|gb|AEZ39604.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
RM12579]
gi|377899702|gb|EHU64048.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3A]
gi|377901498|gb|EHU65814.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3B]
gi|377913110|gb|EHU77254.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3C]
gi|377917176|gb|EHU81241.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3D]
gi|377919854|gb|EHU83888.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3E]
gi|377931075|gb|EHU94945.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3F]
gi|377933305|gb|EHU97150.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4A]
gi|377938207|gb|EHV01975.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4B]
gi|377949244|gb|EHV12884.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4C]
gi|377950209|gb|EHV13837.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4D]
gi|377953743|gb|EHV17307.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4E]
gi|377964410|gb|EHV27845.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC5A]
gi|377966303|gb|EHV29715.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4F]
gi|377970991|gb|EHV34348.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC5B]
gi|377978988|gb|EHV42266.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC5C]
gi|377979166|gb|EHV42443.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC5D]
gi|377986469|gb|EHV49659.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC5E]
gi|386794867|gb|AFJ27901.1| ATP-dependent RNA helicase RhlE [Escherichia coli Xuzhou21]
gi|390649930|gb|EIN28402.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK1996]
gi|390651672|gb|EIN29942.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA517]
gi|390669056|gb|EIN45761.1| ATP-dependent RNA helicase rhlE [Escherichia coli 93-001]
gi|390687795|gb|EIN62940.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA3]
gi|390690684|gb|EIN65470.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA9]
gi|390691364|gb|EIN66112.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA5]
gi|390709283|gb|EIN82393.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA15]
gi|390719403|gb|EIN92128.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA22]
gi|390732457|gb|EIO04142.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA25]
gi|390732767|gb|EIO04441.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA24]
gi|390735327|gb|EIO06721.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA28]
gi|390751004|gb|EIO20976.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA31]
gi|390751421|gb|EIO21332.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA32]
gi|390761962|gb|EIO31232.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA40]
gi|390776912|gb|EIO44791.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA42]
gi|390781177|gb|EIO48862.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA39]
gi|390784981|gb|EIO52537.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW06591]
gi|390794132|gb|EIO61431.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW10246]
gi|390801014|gb|EIO68080.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW11039]
gi|390808163|gb|EIO75009.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW07945]
gi|390811320|gb|EIO78034.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW09109]
gi|390818720|gb|EIO85089.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW10119]
gi|390821664|gb|EIO87843.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW09098]
gi|390836280|gb|EIP00833.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4203]
gi|390838892|gb|EIP03069.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4196]
gi|390839808|gb|EIP03888.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW09195]
gi|390854827|gb|EIP17604.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW14301]
gi|390857889|gb|EIP20312.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW14313]
gi|390858020|gb|EIP20441.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4421]
gi|390870510|gb|EIP32011.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4422]
gi|390874956|gb|EIP36038.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4013]
gi|390884803|gb|EIP45069.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4402]
gi|390887323|gb|EIP47306.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4439]
gi|390893053|gb|EIP52621.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4436]
gi|390903454|gb|EIP62500.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1738]
gi|390908508|gb|EIP67331.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4437]
gi|390911273|gb|EIP69978.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1734]
gi|390924107|gb|EIP81909.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1863]
gi|390925816|gb|EIP83448.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1845]
gi|408071615|gb|EKH05950.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA7]
gi|408075733|gb|EKH09965.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK920]
gi|408085388|gb|EKH19012.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA34]
gi|408089225|gb|EKH22556.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA506]
gi|408094017|gb|EKH27062.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA507]
gi|408101056|gb|EKH33525.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA504]
gi|408109307|gb|EKH41234.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK1999]
gi|408121072|gb|EKH52036.1| ATP-dependent RNA helicase rhlE [Escherichia coli NE1487]
gi|408129264|gb|EKH59497.1| ATP-dependent RNA helicase rhlE [Escherichia coli NE037]
gi|408130964|gb|EKH61025.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK2001]
gi|408140235|gb|EKH69770.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA4]
gi|408149439|gb|EKH78117.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA23]
gi|408151260|gb|EKH79768.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA49]
gi|408156447|gb|EKH84649.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA45]
gi|408166156|gb|EKH93774.1| ATP-dependent RNA helicase rhlE [Escherichia coli TT12B]
gi|408170867|gb|EKH98017.1| ATP-dependent RNA helicase rhlE [Escherichia coli MA6]
gi|408172863|gb|EKH99915.1| ATP-dependent RNA helicase rhlE [Escherichia coli 5905]
gi|408186144|gb|EKI12251.1| ATP-dependent RNA helicase rhlE [Escherichia coli CB7326]
gi|408190165|gb|EKI15836.1| ATP-dependent RNA helicase rhlE [Escherichia coli 5412]
gi|408190455|gb|EKI16100.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC96038]
gi|408232112|gb|EKI55365.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA38]
gi|408248415|gb|EKI70464.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1736]
gi|408258389|gb|EKI79660.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1846]
gi|408267432|gb|EKI87892.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1847]
gi|408268914|gb|EKI89236.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1848]
gi|408283982|gb|EKJ03111.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1850]
gi|408286629|gb|EKJ05548.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1856]
gi|408299401|gb|EKJ17202.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1862]
gi|408299864|gb|EKJ17629.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1864]
gi|408315484|gb|EKJ31799.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1868]
gi|408315913|gb|EKJ32211.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1866]
gi|408330454|gb|EKJ45717.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1869]
gi|408335464|gb|EKJ50310.1| ATP-dependent RNA helicase rhlE [Escherichia coli NE098]
gi|408336989|gb|EKJ51735.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1870]
gi|408349709|gb|EKJ63631.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK523]
gi|408352595|gb|EKJ66139.1| ATP-dependent RNA helicase rhlE [Escherichia coli 0.1304]
gi|408557723|gb|EKK34146.1| ATP-dependent RNA helicase rhlE [Escherichia coli 5.2239]
gi|408557978|gb|EKK34393.1| ATP-dependent RNA helicase rhlE [Escherichia coli 3.4870]
gi|408558710|gb|EKK35069.1| ATP-dependent RNA helicase rhlE [Escherichia coli 6.0172]
gi|408584545|gb|EKK59545.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.0586]
gi|408588569|gb|EKK63141.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.2524]
gi|408589960|gb|EKK64459.1| ATP-dependent RNA helicase rhlE [Escherichia coli 10.0833]
gi|408605138|gb|EKK78667.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.0416]
gi|408606641|gb|EKK80067.1| ATP-dependent RNA helicase rhlE [Escherichia coli 88.0221]
gi|408616341|gb|EKK89496.1| ATP-dependent RNA helicase rhlE [Escherichia coli 10.0821]
gi|427213706|gb|EKV83106.1| ATP-dependent RNA helicase rhlE [Escherichia coli 88.1042]
gi|427215415|gb|EKV84597.1| ATP-dependent RNA helicase rhlE [Escherichia coli 89.0511]
gi|427232964|gb|EKW00763.1| ATP-dependent RNA helicase rhlE [Escherichia coli 90.2281]
gi|427233069|gb|EKW00855.1| ATP-dependent RNA helicase rhlE [Escherichia coli 90.0039]
gi|427234609|gb|EKW02286.1| ATP-dependent RNA helicase rhlE [Escherichia coli 90.0091]
gi|427250384|gb|EKW17055.1| ATP-dependent RNA helicase rhlE [Escherichia coli 93.0056]
gi|427251916|gb|EKW18438.1| ATP-dependent RNA helicase rhlE [Escherichia coli 93.0055]
gi|427253243|gb|EKW19685.1| ATP-dependent RNA helicase rhlE [Escherichia coli 94.0618]
gi|427269502|gb|EKW34459.1| ATP-dependent RNA helicase rhlE [Escherichia coli 95.0183]
gi|427269662|gb|EKW34614.1| ATP-dependent RNA helicase rhlE [Escherichia coli 95.0943]
gi|427274177|gb|EKW38837.1| ATP-dependent RNA helicase rhlE [Escherichia coli 95.1288]
gi|427285696|gb|EKW49635.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0428]
gi|427292672|gb|EKW55999.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0939]
gi|427304283|gb|EKW66940.1| ATP-dependent RNA helicase rhlE [Escherichia coli 97.0003]
gi|427305314|gb|EKW67909.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0932]
gi|427309391|gb|EKW71709.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0107]
gi|427320780|gb|EKW82514.1| ATP-dependent RNA helicase rhlE [Escherichia coli 97.1742]
gi|427321347|gb|EKW83041.1| ATP-dependent RNA helicase rhlE [Escherichia coli 97.0007]
gi|427333180|gb|EKW94290.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0713]
gi|427333393|gb|EKW94498.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0678]
gi|427336332|gb|EKW97310.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0672]
gi|429259288|gb|EKY42985.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0109]
gi|429261458|gb|EKY44900.1| ATP-dependent RNA helicase rhlE [Escherichia coli 97.0010]
gi|444541943|gb|ELV21373.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0814]
gi|444549573|gb|ELV27810.1| ATP-dependent RNA helicase rhlE [Escherichia coli 09BKT078844]
gi|444551365|gb|ELV29325.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0815]
gi|444564136|gb|ELV41093.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0839]
gi|444566458|gb|ELV43291.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0816]
gi|444570293|gb|ELV46830.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0848]
gi|444581231|gb|ELV57093.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1753]
gi|444584375|gb|ELV60020.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1775]
gi|444598674|gb|ELV73587.1| ATP-dependent RNA helicase rhlE [Escherichia coli ATCC 700728]
gi|444599239|gb|ELV74129.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA11]
gi|444607041|gb|ELV81638.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1805]
gi|444613400|gb|ELV87659.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA19]
gi|444613514|gb|ELV87772.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA13]
gi|444621829|gb|ELV95797.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA2]
gi|444631187|gb|ELW04791.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA48]
gi|444631451|gb|ELW05049.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA47]
gi|444636219|gb|ELW09621.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA8]
gi|444646598|gb|ELW19600.1| ATP-dependent RNA helicase rhlE [Escherichia coli 7.1982]
gi|444649268|gb|ELW22169.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1781]
gi|444652588|gb|ELW25346.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1762]
gi|444661713|gb|ELW34001.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA35]
gi|444665877|gb|ELW37971.1| ATP-dependent RNA helicase rhlE [Escherichia coli 3.4880]
gi|444671957|gb|ELW43717.1| ATP-dependent RNA helicase rhlE [Escherichia coli 95.0083]
gi|444674008|gb|ELW45592.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0670]
Length = 455
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|16128765|ref|NP_415318.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
MG1655]
gi|170020847|ref|YP_001725801.1| ATP-dependent RNA helicase RhlE [Escherichia coli ATCC 8739]
gi|170080456|ref|YP_001729776.1| ATP-dependent RNA helicase RhlE [Escherichia coli str. K-12 substr.
DH10B]
gi|188494973|ref|ZP_03002243.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 53638]
gi|191166178|ref|ZP_03028012.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B7A]
gi|194433132|ref|ZP_03065414.1| putative ATP-dependent RNA helicase RhlE [Shigella dysenteriae
1012]
gi|194438467|ref|ZP_03070557.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 101-1]
gi|209918043|ref|YP_002292127.1| ATP-dependent RNA helicase RhlE [Escherichia coli SE11]
gi|218553381|ref|YP_002386294.1| ATP-dependent RNA helicase RhlE [Escherichia coli IAI1]
gi|218694271|ref|YP_002401938.1| ATP-dependent RNA helicase RhlE [Escherichia coli 55989]
gi|238900056|ref|YP_002925852.1| ATP-dependent RNA helicase RhlE [Escherichia coli BW2952]
gi|251784316|ref|YP_002998620.1| ATP-dependent RNA helicase [Escherichia coli BL21(DE3)]
gi|253774200|ref|YP_003037031.1| ATP-dependent RNA helicase RhlE [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254160874|ref|YP_003043982.1| ATP-dependent RNA helicase RhlE [Escherichia coli B str. REL606]
gi|254287688|ref|YP_003053436.1| RNA helicase [Escherichia coli BL21(DE3)]
gi|297521312|ref|ZP_06939698.1| ATP-dependent RNA helicase RhlE [Escherichia coli OP50]
gi|300816442|ref|ZP_07096664.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 107-1]
gi|300907124|ref|ZP_07124790.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 84-1]
gi|300920043|ref|ZP_07136502.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 115-1]
gi|300922820|ref|ZP_07138906.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 182-1]
gi|300929402|ref|ZP_07144871.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 187-1]
gi|301303551|ref|ZP_07209673.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 124-1]
gi|301327988|ref|ZP_07221153.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 78-1]
gi|307313793|ref|ZP_07593410.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
gi|309794255|ref|ZP_07688679.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 145-7]
gi|312970872|ref|ZP_07785051.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 1827-70]
gi|331641310|ref|ZP_08342445.1| ATP-dependent RNA helicase RhlE [Escherichia coli H736]
gi|378713847|ref|YP_005278740.1| DEAD/DEAH box helicase [Escherichia coli KO11FL]
gi|386279806|ref|ZP_10057482.1| ATP-dependent RNA helicase rhlE [Escherichia sp. 4_1_40B]
gi|386596367|ref|YP_006092767.1| DEAD/DEAH box helicase [Escherichia coli DH1]
gi|386608116|ref|YP_006123602.1| RNA helicase [Escherichia coli W]
gi|386612960|ref|YP_006132626.1| ATP-dependent RNA helicase RhlE [Escherichia coli UMNK88]
gi|386708558|ref|YP_006172279.1| ATP-dependent RNA helicase RhlE [Escherichia coli W]
gi|387611339|ref|YP_006114455.1| putative ATP-dependent RNA helicase [Escherichia coli ETEC H10407]
gi|387620524|ref|YP_006128151.1| ATP-dependent RNA helicase RhlE [Escherichia coli DH1]
gi|388476882|ref|YP_489070.1| RNA helicase [Escherichia coli str. K-12 substr. W3110]
gi|404374120|ref|ZP_10979340.1| ATP-dependent RNA helicase rhlE [Escherichia sp. 1_1_43]
gi|407468269|ref|YP_006785289.1| ATP-dependent RNA helicase RhlE [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407482998|ref|YP_006780147.1| ATP-dependent RNA helicase RhlE [Escherichia coli O104:H4 str.
2011C-3493]
gi|410483550|ref|YP_006771096.1| ATP-dependent RNA helicase RhlE [Escherichia coli O104:H4 str.
2009EL-2050]
gi|415812962|ref|ZP_11504956.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli LT-68]
gi|415860752|ref|ZP_11534467.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 85-1]
gi|415875932|ref|ZP_11542552.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 79-10]
gi|416286848|ref|ZP_11648633.1| ATP-dependent RNA helicase RhlE [Shigella boydii ATCC 9905]
gi|417120582|ref|ZP_11970140.1| ATP-dependent RNA helicase RhlE [Escherichia coli 97.0246]
gi|417130674|ref|ZP_11975945.1| ATP-dependent RNA helicase RhlE [Escherichia coli 5.0588]
gi|417152584|ref|ZP_11991375.1| ATP-dependent RNA helicase RhlE [Escherichia coli 96.0497]
gi|417229406|ref|ZP_12030992.1| ATP-dependent RNA helicase RhlE [Escherichia coli 5.0959]
gi|417261194|ref|ZP_12048682.1| ATP-dependent RNA helicase RhlE [Escherichia coli 2.3916]
gi|417274502|ref|ZP_12061842.1| ATP-dependent RNA helicase RhlE [Escherichia coli 2.4168]
gi|417275438|ref|ZP_12062775.1| ATP-dependent RNA helicase RhlE [Escherichia coli 3.2303]
gi|417290025|ref|ZP_12077308.1| ATP-dependent RNA helicase RhlE [Escherichia coli B41]
gi|417580058|ref|ZP_12230876.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_B2F1]
gi|417611890|ref|ZP_12262362.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_EH250]
gi|417633416|ref|ZP_12283635.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_S1191]
gi|417638120|ref|ZP_12288287.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli TX1999]
gi|417672819|ref|ZP_12322278.1| putative ATP-dependent RNA helicase rhlE [Shigella dysenteriae
155-74]
gi|417831928|ref|ZP_12478449.1| ATP-dependent RNA helicase RhlE [Escherichia coli O104:H4 str.
01-09591]
gi|417864079|ref|ZP_12509126.1| hypothetical protein C22711_1012 [Escherichia coli O104:H4 str.
C227-11]
gi|417945085|ref|ZP_12588322.1| ATP-dependent RNA helicase RhlE [Escherichia coli XH140A]
gi|417975121|ref|ZP_12615921.1| ATP-dependent RNA helicase RhlE [Escherichia coli XH001]
gi|418042874|ref|ZP_12681057.1| ATP-dependent RNA helicase RhlE [Escherichia coli W26]
gi|418301699|ref|ZP_12913493.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli UMNF18]
gi|418958870|ref|ZP_13510779.1| DEAD/DEAH box helicase domain protein [Escherichia coli J53]
gi|419141314|ref|ZP_13686068.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC6A]
gi|419146912|ref|ZP_13691603.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC6B]
gi|419152706|ref|ZP_13697290.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC6C]
gi|419158127|ref|ZP_13702644.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC6D]
gi|419163060|ref|ZP_13707536.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC6E]
gi|419168783|ref|ZP_13713177.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC7A]
gi|419174163|ref|ZP_13718016.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC7B]
gi|419179764|ref|ZP_13723387.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC7C]
gi|419185324|ref|ZP_13728846.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC7D]
gi|419190518|ref|ZP_13733985.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC7E]
gi|419369058|ref|ZP_13910186.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC14A]
gi|419390192|ref|ZP_13931029.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15A]
gi|419395363|ref|ZP_13936146.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15B]
gi|419405890|ref|ZP_13946592.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15D]
gi|419411382|ref|ZP_13952053.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15E]
gi|419809588|ref|ZP_14334473.1| ATP-dependent RNA helicase RhlE [Escherichia coli O32:H37 str. P4]
gi|419925807|ref|ZP_14443635.1| ATP-dependent RNA helicase RhlE [Escherichia coli 541-15]
gi|419941037|ref|ZP_14457748.1| ATP-dependent RNA helicase RhlE [Escherichia coli 75]
gi|420347950|ref|ZP_14849344.1| ATP-dependent RNA helicase rhlE [Shigella boydii 965-58]
gi|420384419|ref|ZP_14883805.1| ATP-dependent RNA helicase rhlE [Escherichia coli EPECa12]
gi|421776878|ref|ZP_16213479.1| ATP-dependent RNA helicase RhlE [Escherichia coli AD30]
gi|422769987|ref|ZP_16823678.1| DEAD/DEAH box helicase [Escherichia coli E482]
gi|422785387|ref|ZP_16838126.1| DEAD/DEAH box helicase [Escherichia coli H489]
gi|422791573|ref|ZP_16844276.1| DEAD/DEAH box helicase [Escherichia coli TA007]
gi|422819824|ref|ZP_16868034.1| ATP-dependent RNA helicase rhlE [Escherichia coli M919]
gi|422959077|ref|ZP_16971008.1| ATP-dependent RNA helicase rhlE [Escherichia coli H494]
gi|422991531|ref|ZP_16982302.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
C227-11]
gi|422993473|ref|ZP_16984237.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
C236-11]
gi|422998684|ref|ZP_16989440.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
09-7901]
gi|423007145|ref|ZP_16997888.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
04-8351]
gi|423008791|ref|ZP_16999529.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-3677]
gi|423022979|ref|ZP_17013682.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4404]
gi|423028131|ref|ZP_17018824.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4522]
gi|423033965|ref|ZP_17024649.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4623]
gi|423036831|ref|ZP_17027505.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C1]
gi|423041950|ref|ZP_17032617.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C2]
gi|423048640|ref|ZP_17039297.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C3]
gi|423052222|ref|ZP_17041030.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C4]
gi|423059188|ref|ZP_17047984.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C5]
gi|423701599|ref|ZP_17676058.1| ATP-dependent RNA helicase rhlE [Escherichia coli H730]
gi|425118864|ref|ZP_18520586.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.0569]
gi|425271545|ref|ZP_18663041.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW15901]
gi|427803888|ref|ZP_18970955.1| putative ATP-dependent RNA helicase [Escherichia coli chi7122]
gi|427808473|ref|ZP_18975538.1| putative ATP-dependent RNA helicase [Escherichia coli]
gi|429723022|ref|ZP_19257911.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429775196|ref|ZP_19307194.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02030]
gi|429780383|ref|ZP_19312333.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02033-1]
gi|429784436|ref|ZP_19316345.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02092]
gi|429789773|ref|ZP_19321645.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02093]
gi|429796003|ref|ZP_19327826.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02281]
gi|429801928|ref|ZP_19333703.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02318]
gi|429805560|ref|ZP_19337304.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02913]
gi|429811156|ref|ZP_19342855.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-03439]
gi|429816507|ref|ZP_19348163.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-04080]
gi|429821715|ref|ZP_19353327.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-03943]
gi|429907384|ref|ZP_19373352.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429911585|ref|ZP_19377541.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-9941]
gi|429917420|ref|ZP_19383360.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429922458|ref|ZP_19388379.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429923311|ref|ZP_19389227.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429932206|ref|ZP_19398100.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429933808|ref|ZP_19399698.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429939467|ref|ZP_19405341.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429947109|ref|ZP_19412964.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429949741|ref|ZP_19415589.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429958019|ref|ZP_19423848.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec12-0466]
gi|432368810|ref|ZP_19611911.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE10]
gi|432415781|ref|ZP_19658405.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE44]
gi|432484490|ref|ZP_19726410.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE212]
gi|432530124|ref|ZP_19767164.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE233]
gi|432533021|ref|ZP_19770012.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE234]
gi|432562727|ref|ZP_19799348.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE51]
gi|432579446|ref|ZP_19815877.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE56]
gi|432626403|ref|ZP_19862384.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE77]
gi|432636070|ref|ZP_19871952.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE81]
gi|432660024|ref|ZP_19895674.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE111]
gi|432669700|ref|ZP_19905241.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE119]
gi|432684601|ref|ZP_19919913.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE156]
gi|432690689|ref|ZP_19925928.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE161]
gi|432703361|ref|ZP_19938480.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE171]
gi|432736297|ref|ZP_19971068.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE42]
gi|432749230|ref|ZP_19983844.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE29]
gi|432764118|ref|ZP_19998566.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE48]
gi|432804897|ref|ZP_20038838.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE91]
gi|432880532|ref|ZP_20097067.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE154]
gi|432933336|ref|ZP_20133004.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE184]
gi|432954097|ref|ZP_20146216.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE197]
gi|433046931|ref|ZP_20234342.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE120]
gi|433091124|ref|ZP_20277420.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE138]
gi|433129147|ref|ZP_20314616.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE163]
gi|433133962|ref|ZP_20319336.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE166]
gi|433172626|ref|ZP_20357179.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE232]
gi|433192762|ref|ZP_20376776.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE90]
gi|442595224|ref|ZP_21013074.1| ATP-dependent RNA helicase RhlE [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|442599480|ref|ZP_21017198.1| ATP-dependent RNA helicase RhlE [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
gi|443616850|ref|YP_007380706.1| ATP-dependent RNA helicase RhlE [Escherichia coli APEC O78]
gi|450212255|ref|ZP_21894522.1| ATP-dependent RNA helicase RhlE [Escherichia coli O08]
gi|450240632|ref|ZP_21899377.1| ATP-dependent RNA helicase RhlE [Escherichia coli S17]
gi|548730|sp|P25888.3|RHLE_ECOLI RecName: Full=ATP-dependent RNA helicase RhlE
gi|560801|gb|AAA53653.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
W3110]
gi|1787016|gb|AAC73884.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
MG1655]
gi|4062355|dbj|BAA35457.1| RNA helicase [Escherichia coli str. K12 substr. W3110]
gi|169755775|gb|ACA78474.1| DEAD/DEAH box helicase domain protein [Escherichia coli ATCC 8739]
gi|169888291|gb|ACB01998.1| RNA helicase [Escherichia coli str. K-12 substr. DH10B]
gi|188490172|gb|EDU65275.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 53638]
gi|190903787|gb|EDV63502.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B7A]
gi|194418629|gb|EDX34716.1| putative ATP-dependent RNA helicase RhlE [Shigella dysenteriae
1012]
gi|194422691|gb|EDX38688.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 101-1]
gi|209911302|dbj|BAG76376.1| putative ATP-dependent RNA helicase [Escherichia coli SE11]
gi|218351003|emb|CAU96707.1| RNA helicase [Escherichia coli 55989]
gi|218360149|emb|CAQ97698.1| RNA helicase [Escherichia coli IAI1]
gi|238863492|gb|ACR65490.1| RNA helicase [Escherichia coli BW2952]
gi|242376589|emb|CAQ31298.1| ATP-dependent RNA helicase [Escherichia coli BL21(DE3)]
gi|253325244|gb|ACT29846.1| DEAD/DEAH box helicase domain protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253972775|gb|ACT38446.1| RNA helicase [Escherichia coli B str. REL606]
gi|253976995|gb|ACT42665.1| RNA helicase [Escherichia coli BL21(DE3)]
gi|260450056|gb|ACX40478.1| DEAD/DEAH box helicase domain protein [Escherichia coli DH1]
gi|300401169|gb|EFJ84707.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 84-1]
gi|300412990|gb|EFJ96300.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 115-1]
gi|300420852|gb|EFK04163.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 182-1]
gi|300462602|gb|EFK26095.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 187-1]
gi|300531132|gb|EFK52194.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 107-1]
gi|300841050|gb|EFK68810.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 124-1]
gi|300845553|gb|EFK73313.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 78-1]
gi|306906433|gb|EFN36947.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
gi|308122160|gb|EFO59422.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 145-7]
gi|309701075|emb|CBJ00373.1| putative ATP-dependent RNA helicase [Escherichia coli ETEC H10407]
gi|310336633|gb|EFQ01800.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 1827-70]
gi|315060033|gb|ADT74360.1| RNA helicase [Escherichia coli W]
gi|315135447|dbj|BAJ42606.1| ATP-dependent RNA helicase RhlE [Escherichia coli DH1]
gi|315257782|gb|EFU37750.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 85-1]
gi|320178508|gb|EFW53473.1| ATP-dependent RNA helicase RhlE [Shigella boydii ATCC 9905]
gi|323172087|gb|EFZ57726.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli LT-68]
gi|323379408|gb|ADX51676.1| DEAD/DEAH box helicase domain protein [Escherichia coli KO11FL]
gi|323942670|gb|EGB38835.1| DEAD/DEAH box helicase [Escherichia coli E482]
gi|323963044|gb|EGB58615.1| DEAD/DEAH box helicase [Escherichia coli H489]
gi|323971962|gb|EGB67183.1| DEAD/DEAH box helicase [Escherichia coli TA007]
gi|331038108|gb|EGI10328.1| ATP-dependent RNA helicase RhlE [Escherichia coli H736]
gi|332091029|gb|EGI96119.1| putative ATP-dependent RNA helicase rhlE [Shigella dysenteriae
155-74]
gi|332342129|gb|AEE55463.1| ATP-dependent RNA helicase RhlE [Escherichia coli UMNK88]
gi|339413797|gb|AEJ55469.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli UMNF18]
gi|340735584|gb|EGR64641.1| ATP-dependent RNA helicase RhlE [Escherichia coli O104:H4 str.
01-09591]
gi|341917368|gb|EGT66984.1| hypothetical protein C22711_1012 [Escherichia coli O104:H4 str.
C227-11]
gi|342363259|gb|EGU27369.1| ATP-dependent RNA helicase RhlE [Escherichia coli XH140A]
gi|342929072|gb|EGU97794.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 79-10]
gi|344195112|gb|EGV49182.1| ATP-dependent RNA helicase RhlE [Escherichia coli XH001]
gi|345343247|gb|EGW75637.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_B2F1]
gi|345365239|gb|EGW97348.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_EH250]
gi|345390130|gb|EGX19929.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_S1191]
gi|345395107|gb|EGX24859.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli TX1999]
gi|354856533|gb|EHF16991.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
04-8351]
gi|354857780|gb|EHF18233.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
C227-11]
gi|354864548|gb|EHF24977.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
C236-11]
gi|354874861|gb|EHF35227.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
09-7901]
gi|354878821|gb|EHF39168.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4404]
gi|354882613|gb|EHF42935.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-3677]
gi|354884235|gb|EHF44548.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4522]
gi|354887292|gb|EHF47567.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4623]
gi|354900487|gb|EHF60621.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C1]
gi|354903632|gb|EHF63732.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C2]
gi|354905995|gb|EHF66077.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C3]
gi|354916912|gb|EHF76882.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C5]
gi|354920973|gb|EHF80898.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C4]
gi|359331489|dbj|BAL37936.1| RNA helicase [Escherichia coli str. K-12 substr. MDS42]
gi|371595351|gb|EHN84201.1| ATP-dependent RNA helicase rhlE [Escherichia coli H494]
gi|377998929|gb|EHV62016.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC6A]
gi|378000431|gb|EHV63502.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC6B]
gi|378002941|gb|EHV65990.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC6C]
gi|378012216|gb|EHV75148.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC6D]
gi|378015762|gb|EHV78653.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC6E]
gi|378018001|gb|EHV80868.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC7A]
gi|378026949|gb|EHV89581.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC7C]
gi|378032742|gb|EHV95323.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC7D]
gi|378037020|gb|EHV99555.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC7B]
gi|378041755|gb|EHW04213.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC7E]
gi|378221719|gb|EHX81964.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC14A]
gi|378242955|gb|EHY02903.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15A]
gi|378250840|gb|EHY10743.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15B]
gi|378257173|gb|EHY17015.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15D]
gi|378261059|gb|EHY20856.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15E]
gi|383404250|gb|AFH10493.1| ATP-dependent RNA helicase RhlE [Escherichia coli W]
gi|383474131|gb|EID66127.1| ATP-dependent RNA helicase RhlE [Escherichia coli W26]
gi|384378339|gb|EIE36221.1| DEAD/DEAH box helicase domain protein [Escherichia coli J53]
gi|385157769|gb|EIF19760.1| ATP-dependent RNA helicase RhlE [Escherichia coli O32:H37 str. P4]
gi|385536439|gb|EIF83332.1| ATP-dependent RNA helicase rhlE [Escherichia coli M919]
gi|385711895|gb|EIG48851.1| ATP-dependent RNA helicase rhlE [Escherichia coli H730]
gi|386123053|gb|EIG71654.1| ATP-dependent RNA helicase rhlE [Escherichia sp. 4_1_40B]
gi|386149237|gb|EIG95669.1| ATP-dependent RNA helicase RhlE [Escherichia coli 97.0246]
gi|386153782|gb|EIH05063.1| ATP-dependent RNA helicase RhlE [Escherichia coli 5.0588]
gi|386169308|gb|EIH35816.1| ATP-dependent RNA helicase RhlE [Escherichia coli 96.0497]
gi|386205896|gb|EII10402.1| ATP-dependent RNA helicase RhlE [Escherichia coli 5.0959]
gi|386224321|gb|EII46656.1| ATP-dependent RNA helicase RhlE [Escherichia coli 2.3916]
gi|386232930|gb|EII64915.1| ATP-dependent RNA helicase RhlE [Escherichia coli 2.4168]
gi|386242091|gb|EII79004.1| ATP-dependent RNA helicase RhlE [Escherichia coli 3.2303]
gi|386256063|gb|EIJ05751.1| ATP-dependent RNA helicase RhlE [Escherichia coli B41]
gi|388385529|gb|EIL47208.1| ATP-dependent RNA helicase RhlE [Escherichia coli 541-15]
gi|388401755|gb|EIL62377.1| ATP-dependent RNA helicase RhlE [Escherichia coli 75]
gi|391270091|gb|EIQ28988.1| ATP-dependent RNA helicase rhlE [Shigella boydii 965-58]
gi|391309255|gb|EIQ66932.1| ATP-dependent RNA helicase rhlE [Escherichia coli EPECa12]
gi|404292334|gb|EJZ49160.1| ATP-dependent RNA helicase rhlE [Escherichia sp. 1_1_43]
gi|406778712|gb|AFS58136.1| ATP-dependent RNA helicase RhlE [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407055295|gb|AFS75346.1| ATP-dependent RNA helicase RhlE [Escherichia coli O104:H4 str.
2011C-3493]
gi|407064304|gb|AFS85351.1| ATP-dependent RNA helicase RhlE [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408197166|gb|EKI22433.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW15901]
gi|408457992|gb|EKJ81782.1| ATP-dependent RNA helicase RhlE [Escherichia coli AD30]
gi|408572879|gb|EKK48760.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.0569]
gi|412962070|emb|CCK45984.1| putative ATP-dependent RNA helicase [Escherichia coli chi7122]
gi|412968652|emb|CCJ43277.1| putative ATP-dependent RNA helicase [Escherichia coli]
gi|429349931|gb|EKY86666.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02030]
gi|429350885|gb|EKY87608.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02033-1]
gi|429351021|gb|EKY87742.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02092]
gi|429365299|gb|EKZ01912.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02093]
gi|429366250|gb|EKZ02853.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02281]
gi|429368813|gb|EKZ05396.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02318]
gi|429381220|gb|EKZ17707.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02913]
gi|429382188|gb|EKZ18653.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-03439]
gi|429383623|gb|EKZ20082.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-03943]
gi|429395454|gb|EKZ31820.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-04080]
gi|429396668|gb|EKZ33016.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429397546|gb|EKZ33892.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429409274|gb|EKZ45504.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429417734|gb|EKZ53881.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429421403|gb|EKZ57524.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429423143|gb|EKZ59251.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429427145|gb|EKZ63230.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429434027|gb|EKZ70056.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429438014|gb|EKZ74008.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429443370|gb|EKZ79322.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429449473|gb|EKZ85372.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec12-0466]
gi|429455349|gb|EKZ91205.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-9941]
gi|430888022|gb|ELC10745.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE10]
gi|430942326|gb|ELC62459.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE44]
gi|431017641|gb|ELD31096.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE212]
gi|431056498|gb|ELD65999.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE233]
gi|431062742|gb|ELD72002.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE234]
gi|431097945|gb|ELE03270.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE51]
gi|431107436|gb|ELE11601.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE56]
gi|431164351|gb|ELE64742.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE77]
gi|431172964|gb|ELE73045.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE81]
gi|431201896|gb|ELF00592.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE111]
gi|431212870|gb|ELF10791.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE119]
gi|431224108|gb|ELF21337.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE156]
gi|431229075|gb|ELF25727.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE161]
gi|431245926|gb|ELF40204.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE171]
gi|431285837|gb|ELF76672.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE42]
gi|431299242|gb|ELF88817.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE29]
gi|431312697|gb|ELG00686.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE48]
gi|431356509|gb|ELG43199.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE91]
gi|431412760|gb|ELG95559.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE154]
gi|431454978|gb|ELH35334.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE184]
gi|431469395|gb|ELH49324.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE197]
gi|431571170|gb|ELI44070.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE120]
gi|431613756|gb|ELI82925.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE138]
gi|431650869|gb|ELJ18177.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE163]
gi|431662039|gb|ELJ28849.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE166]
gi|431695617|gb|ELJ60919.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE232]
gi|431720457|gb|ELJ84486.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE90]
gi|441604670|emb|CCP98208.1| ATP-dependent RNA helicase RhlE [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|441651750|emb|CCQ02695.1| ATP-dependent RNA helicase RhlE [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
gi|443421358|gb|AGC86262.1| ATP-dependent RNA helicase RhlE [Escherichia coli APEC O78]
gi|449322017|gb|EMD12021.1| ATP-dependent RNA helicase RhlE [Escherichia coli O08]
gi|449324310|gb|EMD14245.1| ATP-dependent RNA helicase RhlE [Escherichia coli S17]
Length = 454
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|432601332|ref|ZP_19837581.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE66]
gi|431143165|gb|ELE44903.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE66]
Length = 453
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|395215483|ref|ZP_10400949.1| DEAD/DEAH box helicase [Pontibacter sp. BAB1700]
gi|394455827|gb|EJF10233.1| DEAD/DEAH box helicase [Pontibacter sp. BAB1700]
Length = 476
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 163/400 (40%), Positives = 242/400 (60%), Gaps = 26/400 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F + L + +LKAL GYT+PT +QEQAIP ++G D++ +QTG+GKTAAF +P L
Sbjct: 1 MTFSELNLIDPILKALQAEGYTQPTPIQEQAIPHLLAGTDVLGCAQTGTGKTAAFAIPVL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ KN+ +N I T L+LTPTRELA+Q+ + Y
Sbjct: 61 QMLHNQKNRA----------SNTIKT--------------LILTPTRELAIQINESFAAY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ I GG+ Q+Q L R ++L+ATPGRL+D + G I+ H++ VLDE
Sbjct: 97 G-KNTGVRHTVIFGGVSQHAQVQTLKRGVDVLIATPGRLLDLIGQGFISLKHVEFFVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+D+++I+ P RQ++ FSAT+ ++ ++A+ I +P+ ++V +
Sbjct: 156 ADRMLDMGFIHDVKRIIPMLPKQRQSLFFSATMPPVIQDLADTILINPVKVEVTPVSSTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q++ FV+ K LL +LL + + + +VFT TK AD +A LN + A +H
Sbjct: 216 EKVGQAVYFVEKN-DKRELLRHLLSESEIDRVLVFTRTKHGADRVAKDLNKANIQAEAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ QNAR R L N + G ++LVATD+AARGIDV ++HV NY+LP PE YVHRIGRT
Sbjct: 275 GNKSQNARQRALSNFKAGSTRVLVATDIAARGIDVEELSHVINYELPNEPETYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGF 400
GRAG G A+S + ER ++ I++ +QI + + F
Sbjct: 335 GRAGNAGIALSFCDEEERYYLRDIQKLINKQIKVNADHPF 374
>gi|153801601|ref|ZP_01956187.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
gi|124122857|gb|EAY41600.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
Length = 464
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 170/402 (42%), Positives = 239/402 (59%), Gaps = 26/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S+GL +LKA+ + GY P+ +Q QAIPA ++G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
A K P ++ N Q R L+LTPTRELA Q+ Y
Sbjct: 61 ELLA----KGPKVRAN--------------------QVRALILTPTRELAAQIQDNVMLY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +K+ + GG+ QMQ + + +IL+ATPGRL+D N + F L+ILVLDE
Sbjct: 97 GRHLP-LKSAVVFGGVKINPQMQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ +LFSAT + +A+ + +P+ + V+
Sbjct: 156 ADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I + D+ K +L L+++ Q +VF TK A+ +A LN G AA +H
Sbjct: 216 RTVEQCI-YPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G ++ILVATD+AARGID+P + V N++LPK EDYVHRIGRT
Sbjct: 275 GNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G A+SLV+ E + IER T+ +P + GFEP
Sbjct: 335 GRAGEVGKAISLVSAIEAPELFAIERLTQALLPRVNLAGFEP 376
>gi|419344419|ref|ZP_13885801.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13A]
gi|419348857|ref|ZP_13890210.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13B]
gi|419353846|ref|ZP_13895128.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13C]
gi|419359241|ref|ZP_13900466.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13D]
gi|378188847|gb|EHX49441.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13A]
gi|378204519|gb|EHX64935.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13B]
gi|378206700|gb|EHX67102.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13D]
gi|378207818|gb|EHX68206.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13C]
Length = 445
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|261212630|ref|ZP_05926914.1| ATP-dependent RNA helicase RhlE [Vibrio sp. RC341]
gi|384422710|ref|YP_005632069.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae LMA3984-4]
gi|260837695|gb|EEX64372.1| ATP-dependent RNA helicase RhlE [Vibrio sp. RC341]
gi|327485418|gb|AEA79824.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae LMA3984-4]
Length = 464
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 170/406 (41%), Positives = 241/406 (59%), Gaps = 26/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S+GL +LKA+ + GY P+ +Q QAIPA ++G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
A K P ++ N Q R L+LTPTRELA Q+ Y
Sbjct: 61 ELLA----KGPKVRAN--------------------QVRALILTPTRELAAQIQDNVMLY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +K+ + GG+ QMQ + + +IL+ATPGRL+D N + F L+ILVLDE
Sbjct: 97 GRHLP-LKSAVVFGGVKINPQMQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ +LFSAT + +A+ + +P+ + V+
Sbjct: 156 ADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I + D+ K +L L+++ Q +VF TK A+ +A LN G AA +H
Sbjct: 216 RTVEQCI-YPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G ++ILVATD+AARGID+P + V N++LPK EDYVHRIGRT
Sbjct: 275 GNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
GRAG G A+SLV+ E + IER T+ +P + GFEP ++
Sbjct: 335 GRAGEVGKAISLVSAIEAPELFAIERLTQALLPRVNLAGFEPTNQL 380
>gi|336325995|ref|YP_004605961.1| ATP-dependent RNA helicase [Corynebacterium resistens DSM 45100]
gi|336101977|gb|AEI09797.1| ATP-dependent RNA helicase [Corynebacterium resistens DSM 45100]
Length = 786
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 168/389 (43%), Positives = 233/389 (59%), Gaps = 33/389 (8%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F ++GL VL+A+ KVG+ P+ +QEQ IP + G D++ +QTG+GKTAAF LP L +
Sbjct: 120 FDNLGLTSEVLEAVKKVGFEAPSPIQEQTIPVLMEGNDVVGLAQTGTGKTAAFALPILAR 179
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
SK P+ LVL PTRELALQV + E +
Sbjct: 180 IDPSKR----------------------------HPQALVLAPTRELALQVAESFESFAT 211
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
++ I + I GG Y Q+ L R I++ TPGR+IDH+N G ++ S L+ +VLDEAD
Sbjct: 212 HLGGIHVLPIYGGQAYGIQLSGLRRGAHIVVGTPGRVIDHLNKGSLDISELRFMVLDEAD 271
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
ML+MGF D+E+I++ TP +Q LFSAT+ + +++ DP + V S ++ +N
Sbjct: 272 EMLNMGFQEDVERILEDTPEDKQVALFSATMPAGIRRLSKQYLNDPQEITVKSTQRTSEN 331
Query: 243 ITQSILFVDDILHKNRL--LDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
I Q LFV+ H+N+L L +L ++F TK + + +A+RL GF AA ++
Sbjct: 332 IEQDYLFVN---HRNKLEALTRILEVTEFEAMIMFVRTKNETEELAERLRARGFNAAAIN 388
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD+ Q R RT++ L+ GR+ ILVATDVAARG+DV ITHVFNYD+P E YVHRIGRT
Sbjct: 389 GDIAQAQRERTVDQLKDGRLDILVATDVAARGLDVDRITHVFNYDIPHDTESYVHRIGRT 448
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTK 389
GRAGR+G A+ V ER +K IER TK
Sbjct: 449 GRAGRSGRAILFVTPRERRLLKAIERATK 477
>gi|422804761|ref|ZP_16853193.1| DEAD/DEAH box helicase [Escherichia fergusonii B253]
gi|324114364|gb|EGC08333.1| DEAD/DEAH box helicase [Escherichia fergusonii B253]
Length = 453
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|367474852|ref|ZP_09474344.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. ORS 285]
gi|365272847|emb|CCD86812.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. ORS 285]
Length = 469
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 168/395 (42%), Positives = 242/395 (61%), Gaps = 26/395 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F+ L + + +AL + YT PT +Q Q IP A+ GRD+I +QTG+GKTA+F LP LH
Sbjct: 3 SFQDFNLADALTRALKEENYTTPTPIQAQTIPIALQGRDVIGIAQTGTGKTASFALPILH 62
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ + R++ +P R+LVL+PTREL+ Q+ + YG
Sbjct: 63 RLL-----------------------ENRIKPQPKTARVLVLSPTRELSGQILDSFNTYG 99
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+++ ++I GG+P RQ++ + ++L+ATPGRL+D + + SH++ LVLDEA
Sbjct: 100 RHIRLSSTLAI-GGVPMGRQVRAVMPGVDVLVATPGRLLDLVQGNALKLSHVEFLVLDEA 158
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGFINDI KIV P+ RQT+ FSAT+ + +A+++ +DP + V + +
Sbjct: 159 DRMLDMGFINDIRKIVAKLPIKRQTLFFSATMPKDIAELADSMLRDPARVAVTPVSSTVE 218
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
I Q ++ VD N LL LL+++ V +A+VFT TK AD + L +G A +HG
Sbjct: 219 RIAQRVIQVDHSAKPN-LLAQLLKEEPVNRALVFTRTKHGADKVVKSLEKAGIPAQAIHG 277
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ QN R RTL R G I+ LVATD+AARGIDV ++HV N+DLP PE YVHRIGRT
Sbjct: 278 NKSQNHRERTLAAFRTGEIRTLVATDIAARGIDVDGVSHVVNFDLPNVPETYVHRIGRTA 337
Query: 362 RAGRNGFAVSLVNHAERMN-IKKIERFTKQQIPIE 395
RAG G A+SLV A+ ++ ++ IER TK +P E
Sbjct: 338 RAGAEGVAISLVAGADELSYLRDIERLTKVTLPRE 372
>gi|262192111|ref|ZP_06050273.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae CT 5369-93]
gi|262032022|gb|EEY50598.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae CT 5369-93]
Length = 464
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 170/402 (42%), Positives = 239/402 (59%), Gaps = 26/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S+GL +LKA+ + GY P+ +Q QAIPA ++G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
A K P ++ N Q R L+LTPTRELA Q+ Y
Sbjct: 61 ELLA----KGPKVRAN--------------------QVRALILTPTRELAAQIQDNVMLY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +K+ + GG+ QMQ + + +IL+ATPGRL+D N + F L+ILVLDE
Sbjct: 97 GRHLP-LKSAVVFGGVKINPQMQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ +LFSAT + +A+ + +P+ + V+
Sbjct: 156 ADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I + D+ K +L L+++ Q +VF TK A+ +A LN G AA +H
Sbjct: 216 RTVEQCI-YPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G ++ILVATD+AARGID+P + V N++LPK EDYVHRIGRT
Sbjct: 275 GNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G A+SLV+ E + IER T+ +P + GFEP
Sbjct: 335 GRAGEVGKAISLVSAIEAPELFAIERLTQALLPRVNLAGFEP 376
>gi|422748197|ref|ZP_16802110.1| DEAD/DEAH box helicase [Escherichia coli H252]
gi|433011473|ref|ZP_20199877.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE229]
gi|433162588|ref|ZP_20347347.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE179]
gi|323953540|gb|EGB49406.1| DEAD/DEAH box helicase [Escherichia coli H252]
gi|431518088|gb|ELH95608.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE229]
gi|431691258|gb|ELJ56718.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE179]
Length = 453
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RTLILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|422368931|ref|ZP_16449335.1| ATP-dependent RNA helicase RhlE, partial [Escherichia coli MS 16-3]
gi|315299273|gb|EFU58525.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 16-3]
Length = 446
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|331651800|ref|ZP_08352819.1| ATP-dependent RNA helicase RhlE [Escherichia coli M718]
gi|417627721|ref|ZP_12277968.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_MHI813]
gi|432453551|ref|ZP_19695788.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE193]
gi|433032291|ref|ZP_20220065.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE112]
gi|331050078|gb|EGI22136.1| ATP-dependent RNA helicase RhlE [Escherichia coli M718]
gi|345378025|gb|EGX09956.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_MHI813]
gi|430973690|gb|ELC90635.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE193]
gi|431558677|gb|ELI32286.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE112]
Length = 454
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|417595796|ref|ZP_12246456.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 3030-1]
gi|345358931|gb|EGW91111.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 3030-1]
Length = 454
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|432390781|ref|ZP_19633639.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE21]
gi|432792011|ref|ZP_20026101.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE78]
gi|432797974|ref|ZP_20031999.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE79]
gi|430921399|gb|ELC42223.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE21]
gi|431341593|gb|ELG28599.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE78]
gi|431344996|gb|ELG31928.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE79]
Length = 454
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|417137678|ref|ZP_11981468.1| ATP-dependent RNA helicase RhlE [Escherichia coli 97.0259]
gi|386159242|gb|EIH15575.1| ATP-dependent RNA helicase RhlE [Escherichia coli 97.0259]
Length = 453
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|417307244|ref|ZP_12094116.1| ATP-dependent RNA helicase rhlE [Escherichia coli PCN033]
gi|338771115|gb|EGP25863.1| ATP-dependent RNA helicase rhlE [Escherichia coli PCN033]
Length = 453
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|260854088|ref|YP_003227979.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
11368]
gi|415785215|ref|ZP_11492829.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli EPECa14]
gi|417295208|ref|ZP_12082464.1| ATP-dependent RNA helicase RhlE [Escherichia coli 900105 (10e)]
gi|419207940|ref|ZP_13751063.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC8C]
gi|419214487|ref|ZP_13757510.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC8D]
gi|419253551|ref|ZP_13796090.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10A]
gi|419259612|ref|ZP_13802056.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10B]
gi|419265751|ref|ZP_13808132.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10C]
gi|419271293|ref|ZP_13813617.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10D]
gi|419879319|ref|ZP_14400758.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CVM9534]
gi|419886119|ref|ZP_14406771.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CVM9545]
gi|419903986|ref|ZP_14422997.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM9942]
gi|419910328|ref|ZP_14428852.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM10026]
gi|420112198|ref|ZP_14622003.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CVM9553]
gi|420117106|ref|ZP_14626474.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM10021]
gi|420123029|ref|ZP_14631931.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM10030]
gi|420129457|ref|ZP_14637989.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM10224]
gi|420135205|ref|ZP_14643297.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM9952]
gi|424746487|ref|ZP_18174725.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424762635|ref|ZP_18190136.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CFSAN001630]
gi|425377700|ref|ZP_18762068.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1865]
gi|257752737|dbj|BAI24239.1| RNA helicase RhlE [Escherichia coli O26:H11 str. 11368]
gi|323155682|gb|EFZ41853.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli EPECa14]
gi|378061114|gb|EHW23300.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC8C]
gi|378067249|gb|EHW29374.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC8D]
gi|378105091|gb|EHW66738.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10A]
gi|378114392|gb|EHW75948.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10B]
gi|378117330|gb|EHW78846.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10C]
gi|378120824|gb|EHW82286.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10D]
gi|386261571|gb|EIJ17036.1| ATP-dependent RNA helicase RhlE [Escherichia coli 900105 (10e)]
gi|388332252|gb|EIK98931.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CVM9534]
gi|388347103|gb|EIL12797.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CVM9545]
gi|388368577|gb|EIL32204.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM9942]
gi|388371735|gb|EIL35193.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM10026]
gi|394382613|gb|EJE60242.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM10224]
gi|394397074|gb|EJE73380.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CVM9553]
gi|394402533|gb|EJE78247.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM10021]
gi|394417988|gb|EJE91696.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM10030]
gi|394420435|gb|EJE93966.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM9952]
gi|408308877|gb|EKJ26102.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1865]
gi|421940874|gb|EKT98310.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CFSAN001630]
gi|421948130|gb|EKU05171.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CFSAN001629]
Length = 454
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|157155652|ref|YP_001461987.1| ATP-dependent RNA helicase RhlE [Escherichia coli E24377A]
gi|193064450|ref|ZP_03045531.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E22]
gi|194428200|ref|ZP_03060743.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B171]
gi|260843040|ref|YP_003220818.1| RNA helicase RhlE [Escherichia coli O103:H2 str. 12009]
gi|293433058|ref|ZP_06661486.1| ATP-dependent RNA helicase RhlE [Escherichia coli B088]
gi|300824257|ref|ZP_07104374.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 119-7]
gi|331676532|ref|ZP_08377228.1| ATP-dependent RNA helicase RhlE [Escherichia coli H591]
gi|332282359|ref|ZP_08394772.1| ATP-dependent RNA helicase RhlE [Shigella sp. D9]
gi|415803124|ref|ZP_11500296.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli E128010]
gi|415827804|ref|ZP_11514573.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli OK1357]
gi|416345038|ref|ZP_11678681.1| ATP-dependent RNA helicase RhlE [Escherichia coli EC4100B]
gi|417144495|ref|ZP_11986301.1| ATP-dependent RNA helicase RhlE [Escherichia coli 1.2264]
gi|417161484|ref|ZP_11997720.1| ATP-dependent RNA helicase RhlE [Escherichia coli 99.0741]
gi|417177330|ref|ZP_12006811.1| ATP-dependent RNA helicase RhlE [Escherichia coli 3.2608]
gi|417180033|ref|ZP_12007741.1| ATP-dependent RNA helicase RhlE [Escherichia coli 93.0624]
gi|417223820|ref|ZP_12027111.1| ATP-dependent RNA helicase RhlE [Escherichia coli 96.154]
gi|417242638|ref|ZP_12037855.1| ATP-dependent RNA helicase RhlE [Escherichia coli 9.0111]
gi|417254717|ref|ZP_12046468.1| ATP-dependent RNA helicase RhlE [Escherichia coli 4.0967]
gi|417267555|ref|ZP_12054916.1| ATP-dependent RNA helicase RhlE [Escherichia coli 3.3884]
gi|417601131|ref|ZP_12251713.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_94C]
gi|417606902|ref|ZP_12257426.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_DG131-3]
gi|417622131|ref|ZP_12272456.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_H.1.8]
gi|417665935|ref|ZP_12315497.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_O31]
gi|419225574|ref|ZP_13768459.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9A]
gi|419236763|ref|ZP_13779507.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9C]
gi|419242295|ref|ZP_13784942.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9D]
gi|419247811|ref|ZP_13790418.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9E]
gi|419277008|ref|ZP_13819269.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10E]
gi|419282779|ref|ZP_13824991.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10F]
gi|419288330|ref|ZP_13830440.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC11A]
gi|419293682|ref|ZP_13835737.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC11B]
gi|419299089|ref|ZP_13841102.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC11C]
gi|419305383|ref|ZP_13847293.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC11D]
gi|419310421|ref|ZP_13852292.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC11E]
gi|419315707|ref|ZP_13857531.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC12A]
gi|419321653|ref|ZP_13863385.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC12B]
gi|419327782|ref|ZP_13869410.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC12C]
gi|419333303|ref|ZP_13874859.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC12D]
gi|419338624|ref|ZP_13880109.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC12E]
gi|419374460|ref|ZP_13915511.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC14B]
gi|419379737|ref|ZP_13920712.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC14C]
gi|419384945|ref|ZP_13925844.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC14D]
gi|419804719|ref|ZP_14329872.1| ATP-dependent RNA helicase RhlE [Escherichia coli AI27]
gi|419870728|ref|ZP_14392820.1| ATP-dependent RNA helicase RhlE [Escherichia coli O103:H2 str.
CVM9450]
gi|419928780|ref|ZP_14446487.1| ATP-dependent RNA helicase RhlE [Escherichia coli 541-1]
gi|419952234|ref|ZP_14468408.1| ATP-dependent RNA helicase RhlE [Escherichia coli CUMT8]
gi|420390263|ref|ZP_14889531.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli EPEC C342-62]
gi|422775387|ref|ZP_16829043.1| DEAD/DEAH box helicase [Escherichia coli H120]
gi|423708718|ref|ZP_17683096.1| ATP-dependent RNA helicase rhlE [Escherichia coli B799]
gi|425423250|ref|ZP_18804418.1| ATP-dependent RNA helicase rhlE [Escherichia coli 0.1288]
gi|432375905|ref|ZP_19618913.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE12]
gi|432480171|ref|ZP_19722133.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE210]
gi|432812897|ref|ZP_20046742.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE101]
gi|432830770|ref|ZP_20064353.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE135]
gi|432833878|ref|ZP_20067420.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE136]
gi|432966894|ref|ZP_20155810.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE203]
gi|157077682|gb|ABV17390.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Escherichia coli
E24377A]
gi|192928912|gb|EDV82525.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E22]
gi|194413760|gb|EDX30039.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B171]
gi|257758187|dbj|BAI29684.1| RNA helicase RhlE [Escherichia coli O103:H2 str. 12009]
gi|291323877|gb|EFE63299.1| ATP-dependent RNA helicase RhlE [Escherichia coli B088]
gi|300523231|gb|EFK44300.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 119-7]
gi|320198986|gb|EFW73583.1| ATP-dependent RNA helicase RhlE [Escherichia coli EC4100B]
gi|323159727|gb|EFZ45705.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli E128010]
gi|323185047|gb|EFZ70413.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli OK1357]
gi|323947045|gb|EGB43058.1| DEAD/DEAH box helicase [Escherichia coli H120]
gi|331075221|gb|EGI46519.1| ATP-dependent RNA helicase RhlE [Escherichia coli H591]
gi|332104711|gb|EGJ08057.1| ATP-dependent RNA helicase RhlE [Shigella sp. D9]
gi|345353137|gb|EGW85373.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_94C]
gi|345364307|gb|EGW96433.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_DG131-3]
gi|345385199|gb|EGX15046.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_H.1.8]
gi|378080476|gb|EHW42438.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9A]
gi|378088482|gb|EHW50335.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9C]
gi|378093646|gb|EHW55450.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9D]
gi|378099976|gb|EHW61673.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9E]
gi|378132177|gb|EHW93529.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10E]
gi|378135208|gb|EHW96520.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC11A]
gi|378138246|gb|EHW99504.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10F]
gi|378145181|gb|EHX06347.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC11B]
gi|378151862|gb|EHX12964.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC11D]
gi|378155043|gb|EHX16103.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC11C]
gi|378160136|gb|EHX21133.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC11E]
gi|378173088|gb|EHX33932.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC12B]
gi|378173799|gb|EHX34632.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC12A]
gi|378175241|gb|EHX36059.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC12C]
gi|378189533|gb|EHX50125.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC12D]
gi|378193147|gb|EHX53688.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC12E]
gi|378224523|gb|EHX84725.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC14B]
gi|378232924|gb|EHX93018.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC14C]
gi|378236537|gb|EHX96583.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC14D]
gi|384472327|gb|EIE56385.1| ATP-dependent RNA helicase RhlE [Escherichia coli AI27]
gi|385707439|gb|EIG44470.1| ATP-dependent RNA helicase rhlE [Escherichia coli B799]
gi|386164378|gb|EIH26164.1| ATP-dependent RNA helicase RhlE [Escherichia coli 1.2264]
gi|386174020|gb|EIH46021.1| ATP-dependent RNA helicase RhlE [Escherichia coli 99.0741]
gi|386175879|gb|EIH53361.1| ATP-dependent RNA helicase RhlE [Escherichia coli 3.2608]
gi|386185388|gb|EIH68114.1| ATP-dependent RNA helicase RhlE [Escherichia coli 93.0624]
gi|386198868|gb|EIH97859.1| ATP-dependent RNA helicase RhlE [Escherichia coli 96.154]
gi|386211626|gb|EII22082.1| ATP-dependent RNA helicase RhlE [Escherichia coli 9.0111]
gi|386214999|gb|EII31496.1| ATP-dependent RNA helicase RhlE [Escherichia coli 4.0967]
gi|386229913|gb|EII57268.1| ATP-dependent RNA helicase RhlE [Escherichia coli 3.3884]
gi|388338976|gb|EIL05370.1| ATP-dependent RNA helicase RhlE [Escherichia coli O103:H2 str.
CVM9450]
gi|388405146|gb|EIL65583.1| ATP-dependent RNA helicase RhlE [Escherichia coli 541-1]
gi|388412943|gb|EIL72969.1| ATP-dependent RNA helicase RhlE [Escherichia coli CUMT8]
gi|391314587|gb|EIQ72137.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli EPEC C342-62]
gi|397786486|gb|EJK97322.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_O31]
gi|408343465|gb|EKJ57866.1| ATP-dependent RNA helicase rhlE [Escherichia coli 0.1288]
gi|430900533|gb|ELC22551.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE12]
gi|431009653|gb|ELD24267.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE210]
gi|431356103|gb|ELG42794.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE101]
gi|431379611|gb|ELG64540.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE135]
gi|431386759|gb|ELG70712.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE136]
gi|431472866|gb|ELH52700.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE203]
Length = 454
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|422358967|ref|ZP_16439616.1| ATP-dependent RNA helicase RhlE, partial [Escherichia coli MS
110-3]
gi|315287179|gb|EFU46591.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 110-3]
Length = 439
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|117622979|ref|YP_851892.1| ATP-dependent RNA helicase RhlE [Escherichia coli APEC O1]
gi|115512103|gb|ABJ00178.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli APEC O1]
Length = 453
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|407775962|ref|ZP_11123253.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Thalassospira profundimaris WP0211]
gi|407281034|gb|EKF06599.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Thalassospira profundimaris WP0211]
Length = 605
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 157/392 (40%), Positives = 241/392 (61%), Gaps = 25/392 (6%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F +GL E VL+AL + GY PT +Q Q+IP+ + G+DL+ +QTG+GKTAAF LP L +
Sbjct: 4 FSELGLAEPVLRALAQEGYDAPTPIQAQSIPSLLDGKDLLGIAQTGTGKTAAFALPILDR 63
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
+ S+ + P R+LVL PTRELA Q+ + YG
Sbjct: 64 LSKSQTRTPK-----------------------GACRVLVLAPTRELAAQIGESFRAYGR 100
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
++ ++ ++GG+ Q++ ++ E+L+ATPGRL+DH++SGK++ H++++VLDEAD
Sbjct: 101 FLN-VRTAVVVGGVAPGPQIKAITPGVEVLVATPGRLLDHVDSGKLSLKHVEVVVLDEAD 159
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
MLD+GF+ I++I+ P RQ + FSAT+ +G +A ++ DP+ + V + Q+
Sbjct: 160 HMLDLGFLPPIKRIIKMLPRDRQNLFFSATMPTQIGQLAGDMLSDPVKVSVTPVATTQER 219
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
+ QS+ ++ K +LL LL + + +VFT TKR AD +A L + AA +HG+
Sbjct: 220 VEQSVYLIERT-RKRQLLAELLDNPAFKRTLVFTRTKRGADRVARHLEANKISAAAIHGN 278
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
QN R R L + G+I +LVATD+AARGIDV ++THV N++LP PE YVHRIGRT R
Sbjct: 279 KSQNQRERALNAFKDGQINVLVATDIAARGIDVDSVTHVVNFELPNVPESYVHRIGRTAR 338
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
G +G A++ + ER ++ IE+ T+Q IP+
Sbjct: 339 GGASGSAIAFCDEEERGLLRDIEKTTRQSIPV 370
>gi|397685466|ref|YP_006522785.1| DEAD/DEAH box helicase [Pseudomonas stutzeri DSM 10701]
gi|395807022|gb|AFN76427.1| DEAD/DEAH box helicase [Pseudomonas stutzeri DSM 10701]
Length = 592
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 170/404 (42%), Positives = 247/404 (61%), Gaps = 26/404 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E + A+ GYT+PT VQ++AIPA + GRDL+V++QTG+GKT F LP L
Sbjct: 1 MSFASLGLSEALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERL-RFKPAQPRMLVLTPTRELALQVTAATER 119
H +R R+ P QPR+LVLTPTRELA QV +
Sbjct: 61 ELLFPG-------------------GHPDREHRYGPRQPRVLVLTPTRELAAQVH---DS 98
Query: 120 YGLYMKKI--KAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
+ +Y + + K+ I GG+ Q+Q +++ ++L+A PGRL+D N ++ H++ILV
Sbjct: 99 FKVYARDLPFKSACIFGGVGMNPQVQAIAKGLDVLVACPGRLLDLANQKAVDLGHVEILV 158
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
LDEADRMLDMGFI+D++K++ P RQ +LFSAT + ++A + +P ++V
Sbjct: 159 LDEADRMLDMGFIHDVKKVLAKLPAKRQNLLFSATFSKDITDLAGKLLHEPERIEVTPPN 218
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+ I Q + + HK LL +L+ Q +VFT TK A+ +A+ L G AA
Sbjct: 219 TTVERIEQRVYRLP-ATHKRALLAHLISQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAA 277
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
+HG+ QNAR + L + + +++ILVATD+AARG+D+ + HV N++LP EDYVHRI
Sbjct: 278 AIHGNKSQNARTKALADFKANQVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRI 337
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
GRTGRAGR+G A+SLV+ E +K IER TKQ+I + GF+
Sbjct: 338 GRTGRAGRSGEAISLVSPDEEKLLKGIERMTKQKIADGDLMGFD 381
>gi|91209829|ref|YP_539815.1| ATP-dependent RNA helicase RhlE [Escherichia coli UTI89]
gi|218557702|ref|YP_002390615.1| ATP-dependent RNA helicase RhlE [Escherichia coli S88]
gi|218688583|ref|YP_002396795.1| ATP-dependent RNA helicase RhlE [Escherichia coli ED1a]
gi|237707244|ref|ZP_04537725.1| ATP-dependent RNA helicase RhlE [Escherichia sp. 3_2_53FAA]
gi|386598515|ref|YP_006100021.1| ATP-dependent RNA helicase [Escherichia coli IHE3034]
gi|386605309|ref|YP_006111609.1| ATP-dependent RNA helicase RhlE [Escherichia coli UM146]
gi|417083288|ref|ZP_11951383.1| ATP-dependent RNA helicase RhlE [Escherichia coli cloneA_i1]
gi|419945239|ref|ZP_14461691.1| ATP-dependent RNA helicase RhlE [Escherichia coli HM605]
gi|422753403|ref|ZP_16807230.1| DEAD/DEAH box helicase [Escherichia coli H263]
gi|422839261|ref|ZP_16887233.1| ATP-dependent RNA helicase rhlE [Escherichia coli H397]
gi|432357084|ref|ZP_19600329.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE4]
gi|432361555|ref|ZP_19604739.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE5]
gi|432440118|ref|ZP_19682471.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE189]
gi|432445289|ref|ZP_19687595.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE191]
gi|432464759|ref|ZP_19706865.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE205]
gi|432572730|ref|ZP_19809221.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE55]
gi|432582855|ref|ZP_19819265.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE57]
gi|432587037|ref|ZP_19823407.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE58]
gi|432596680|ref|ZP_19832961.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE62]
gi|432753536|ref|ZP_19988102.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE22]
gi|432777676|ref|ZP_20011926.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE59]
gi|432786464|ref|ZP_20020629.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE65]
gi|432801077|ref|ZP_20035062.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE84]
gi|432820056|ref|ZP_20053769.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE118]
gi|432826272|ref|ZP_20059927.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE123]
gi|432897685|ref|ZP_20108516.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE192]
gi|433004263|ref|ZP_20192701.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE227]
gi|433012971|ref|ZP_20201347.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE104]
gi|433022657|ref|ZP_20210669.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE106]
gi|433027779|ref|ZP_20215652.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE109]
gi|433071845|ref|ZP_20258540.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE129]
gi|433119347|ref|ZP_20305054.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE157]
gi|433152888|ref|ZP_20337854.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE176]
gi|433167597|ref|ZP_20352264.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE180]
gi|433182333|ref|ZP_20366629.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE85]
gi|433323476|ref|ZP_20400825.1| ATP-dependent RNA helicase RhlE [Escherichia coli J96]
gi|91071403|gb|ABE06284.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli UTI89]
gi|218364471|emb|CAR02153.1| RNA helicase [Escherichia coli S88]
gi|218426147|emb|CAR06967.1| RNA helicase [Escherichia coli ED1a]
gi|226898454|gb|EEH84713.1| ATP-dependent RNA helicase RhlE [Escherichia sp. 3_2_53FAA]
gi|294493052|gb|ADE91808.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Escherichia coli
IHE3034]
gi|307627793|gb|ADN72097.1| ATP-dependent RNA helicase RhlE [Escherichia coli UM146]
gi|323958086|gb|EGB53795.1| DEAD/DEAH box helicase [Escherichia coli H263]
gi|355352704|gb|EHG01878.1| ATP-dependent RNA helicase RhlE [Escherichia coli cloneA_i1]
gi|371609793|gb|EHN98326.1| ATP-dependent RNA helicase rhlE [Escherichia coli H397]
gi|388416387|gb|EIL76278.1| ATP-dependent RNA helicase RhlE [Escherichia coli HM605]
gi|430879262|gb|ELC02612.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE4]
gi|430889445|gb|ELC12106.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE5]
gi|430969031|gb|ELC86193.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE189]
gi|430975131|gb|ELC92033.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE191]
gi|430996565|gb|ELD12841.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE205]
gi|431111068|gb|ELE14985.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE55]
gi|431119871|gb|ELE22870.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE57]
gi|431123204|gb|ELE25946.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE58]
gi|431132465|gb|ELE34464.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE62]
gi|431304772|gb|ELF93296.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE22]
gi|431329865|gb|ELG17150.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE59]
gi|431341100|gb|ELG28114.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE65]
gi|431350312|gb|ELG37124.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE84]
gi|431370312|gb|ELG56113.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE118]
gi|431374056|gb|ELG59651.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE123]
gi|431428412|gb|ELH10353.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE192]
gi|431517584|gb|ELH95106.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE227]
gi|431534619|gb|ELI11099.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE104]
gi|431539394|gb|ELI15145.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE106]
gi|431545406|gb|ELI20061.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE109]
gi|431592521|gb|ELI63097.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE129]
gi|431648209|gb|ELJ15608.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE157]
gi|431677981|gb|ELJ43993.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE176]
gi|431693120|gb|ELJ58537.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE180]
gi|431711126|gb|ELJ75485.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE85]
gi|432348179|gb|ELL42631.1| ATP-dependent RNA helicase RhlE [Escherichia coli J96]
Length = 453
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|85816749|gb|EAQ37935.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
Length = 425
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 164/402 (40%), Positives = 247/402 (61%), Gaps = 26/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+FKS+GL + +LKA+ + GYT P+ +Q++AIP + G+D++ S+QTG+GKTA F LP L
Sbjct: 1 MSFKSLGLSDALLKAVSEKGYTTPSPIQQKAIPKVLEGKDVLASAQTGTGKTAGFTLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H + N Q K+ R LVLTPTRELA Q+ Y
Sbjct: 61 HNLIA----------NPRQGRRKV--------------RALVLTPTRELAAQIYDNVREY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+ IK+ I GG+ Q++ + + +IL+ATPGRL+D N G ++ S ++ LVLDE
Sbjct: 97 SKYVD-IKSTVIFGGVNQNPQVRTIRQGVDILVATPGRLLDLENQGLLSLSDIEFLVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI+K++ P RQ +LFSAT + + +A +I +P++++
Sbjct: 156 ADRMLDMGFIHDIKKVLRLVPAKRQNLLFSATFNKDIKKLASSILTNPVLVEATPENTTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q VD K +L + + Q +VFT TK A+ ++ +L+ +G +A +H
Sbjct: 216 EKVDQKTYRVDKS-RKTEMLIKFINEGNWDQVLVFTRTKHGANRLSQKLDKAGITSAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ QNAR + L + G+I++LVATD+AARG+D+P + +V NY+LP PEDYVHRIGRT
Sbjct: 275 GNKTQNARVKALAGFKSGKIRVLVATDIAARGLDIPLLPYVINYELPNVPEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG +G A+SLV E ++ IE+ +++ EV+ GF+P
Sbjct: 335 GRAGASGQAISLVGVDEVAYVRGIEKLLGEKLHSEVLEGFQP 376
>gi|300957744|ref|ZP_07169931.1| ATP-dependent RNA helicase RhlE, partial [Escherichia coli MS
175-1]
gi|300315560|gb|EFJ65344.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 175-1]
Length = 439
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|229514699|ref|ZP_04404160.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TMA 21]
gi|429888348|ref|ZP_19369831.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae PS15]
gi|229348679|gb|EEO13637.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TMA 21]
gi|429224548|gb|EKY30912.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae PS15]
Length = 464
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 170/402 (42%), Positives = 239/402 (59%), Gaps = 26/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S+GL +LKA+ + GY P+ +Q QAIPA ++G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
A K P ++ N Q R L+LTPTRELA Q+ Y
Sbjct: 61 ELLA----KGPKVRAN--------------------QVRALILTPTRELAAQIQDNVMLY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +K+ + GG+ QMQ + + +IL+ATPGRL+D N + F L+ILVLDE
Sbjct: 97 GRHLP-LKSAVVFGGVKINPQMQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ +LFSAT + +A+ + +P+ + V+
Sbjct: 156 ADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I + D+ K +L L+++ Q +VF TK A+ +A LN G AA +H
Sbjct: 216 RTVEQCI-YPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G ++ILVATD+AARGID+P + V N++LPK EDYVHRIGRT
Sbjct: 275 GNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G A+SLV+ E + IER T+ +P + GFEP
Sbjct: 335 GRAGEVGKAISLVSAIEAPELFAIERLTQALLPRVNLAGFEP 376
>gi|301646226|ref|ZP_07246122.1| ATP-dependent RNA helicase RhlE, partial [Escherichia coli MS
146-1]
gi|301075563|gb|EFK90369.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 146-1]
Length = 446
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|432945988|ref|ZP_20141726.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE196]
gi|433042299|ref|ZP_20229823.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE117]
gi|431462321|gb|ELH42535.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE196]
gi|431559502|gb|ELI33055.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE117]
Length = 454
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|425304306|ref|ZP_18694089.1| ATP-dependent RNA helicase rhlE [Escherichia coli N1]
gi|408231316|gb|EKI54593.1| ATP-dependent RNA helicase rhlE [Escherichia coli N1]
Length = 454
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|423128237|ref|ZP_17115916.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5250]
gi|376393593|gb|EHT06249.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5250]
Length = 449
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 245/412 (59%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPEILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 H----KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
K +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLVQKEPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ ++++ + GG+ QM L +IL+ATPGRL+D + ++ +++L
Sbjct: 95 VRDYSKYLN-VRSLVVFGGVSINPQMMKLRSGVDILVATPGRLLDLEHQNAVSLDKVEVL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + ++AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDEIKSLAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ ++Q + FVD K LL ++ + Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVSQLVHFVDK-KRKRELLSQMIGEGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E + IER K++IP + G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLHDIERLLKKEIPRIALAGYEPDPSIKA 384
>gi|417364412|ref|ZP_12137345.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Hvittingfoss str. A4-620]
gi|353597290|gb|EHC54049.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Hvittingfoss str. A4-620]
Length = 452
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 243/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITHQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + ++PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLRNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL ++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTAGYEPDPSIKA 384
>gi|301020713|ref|ZP_07184781.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 69-1]
gi|419917866|ref|ZP_14436087.1| ATP-dependent RNA helicase RhlE [Escherichia coli KD2]
gi|300398524|gb|EFJ82062.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 69-1]
gi|388392900|gb|EIL54301.1| ATP-dependent RNA helicase RhlE [Escherichia coli KD2]
Length = 452
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|445268473|ref|ZP_21410195.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Enteritidis str. 436]
gi|444888135|gb|ELY11755.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Enteritidis str. 436]
Length = 452
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 243/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITHQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + ++PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLRNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL ++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTPGYEPDPSIKA 384
>gi|311103372|ref|YP_003976225.1| ATP-dependent RNA helicase RhlE 1 [Achromobacter xylosoxidans A8]
gi|310758061|gb|ADP13510.1| ATP-dependent RNA helicase RhlE 1 [Achromobacter xylosoxidans A8]
Length = 506
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 170/417 (40%), Positives = 246/417 (58%), Gaps = 24/417 (5%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F +GL + +L+A+ + GYT PT +Q QAIP + G DL+ ++QTG+GKTA F LP LH
Sbjct: 7 FADLGLADSLLRAIAETGYTAPTPIQAQAIPQVLKGGDLLAAAQTGTGKTAGFTLPILHL 66
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
M+K K LR KP +PR L+LTPTREL QV + + YG
Sbjct: 67 L---------MQK------------KPELR-KPGRPRCLILTPTRELTAQVEESVQTYGK 104
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
Y + ++ + GG+ Q+ L + +IL+ATPGRL+DH ++ S ++ILVLDEAD
Sbjct: 105 YTP-LNSMVMFGGVNINPQISALRKPLDILVATPGRLLDHCGQKTVDLSGVEILVLDEAD 163
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLDMGFI DI KI+ P RQ +LFSAT + +A + +P + V +
Sbjct: 164 RMLDMGFIRDIRKILALLPKQRQNLLFSATFSDEIRTLARGVLNNPGEVSVTPRNTATEL 223
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
+TQ++ V+ HK L+ +++R+ Q +VFT TK A+ +A++L G AA +HG+
Sbjct: 224 VTQTVHMVEQ-HHKRDLISHIIRESGWHQVLVFTRTKHGANRLAEKLVKDGLTAAAIHGN 282
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
Q+AR R L + + +LVATD+AARG+D+ + V N++LP PEDYVHRIGRTGR
Sbjct: 283 KSQSARTRALAGFKDSTVTVLVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGR 342
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRYRFNNNN 419
AG G AVSLV+++E +K IER K+ I + + G+ P + R + +N
Sbjct: 343 AGATGAAVSLVDNSEIKLLKDIERLIKKTIERKPVEGWTPPATSAAAFDRQERDEDN 399
>gi|419828104|ref|ZP_14351595.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-1A2]
gi|419833027|ref|ZP_14356488.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-61A2]
gi|422918796|ref|ZP_16953096.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-02A1]
gi|423780048|ref|ZP_17714132.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-55C2]
gi|423840903|ref|ZP_17717879.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-59A1]
gi|423867757|ref|ZP_17721551.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-60A1]
gi|423999359|ref|ZP_17742552.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-02C1]
gi|424011378|ref|ZP_17754246.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-55B2]
gi|424021201|ref|ZP_17760971.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-59B1]
gi|424626417|ref|ZP_18064867.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-50A1]
gi|424627308|ref|ZP_18065672.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-51A1]
gi|424631108|ref|ZP_18069331.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-52A1]
gi|424638028|ref|ZP_18076025.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-55A1]
gi|424641924|ref|ZP_18079796.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-56A1]
gi|424646441|ref|ZP_18084169.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-57A1]
gi|443525237|ref|ZP_21091431.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-78A1]
gi|341634020|gb|EGS58788.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-02A1]
gi|408009585|gb|EKG47486.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-50A1]
gi|408020876|gb|EKG58157.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-56A1]
gi|408020934|gb|EKG58214.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-55A1]
gi|408028856|gb|EKG65711.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-52A1]
gi|408040724|gb|EKG76888.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-57A1]
gi|408060896|gb|EKG95498.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-51A1]
gi|408623177|gb|EKK96131.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-1A2]
gi|408638465|gb|EKL10363.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-55C2]
gi|408647380|gb|EKL18908.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-60A1]
gi|408647831|gb|EKL19284.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-59A1]
gi|408650351|gb|EKL21626.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-61A2]
gi|408849483|gb|EKL89499.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-02C1]
gi|408864773|gb|EKM04189.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-59B1]
gi|408870749|gb|EKM10017.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-55B2]
gi|443456352|gb|ELT20025.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-78A1]
Length = 467
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 170/406 (41%), Positives = 241/406 (59%), Gaps = 26/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S+GL +LKA+ + GY P+ +Q QAIPA ++G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
A K P ++ N Q R L+LTPTRELA Q+ Y
Sbjct: 61 ELLA----KGPKVRAN--------------------QVRALILTPTRELAAQIQDNVMLY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +K+ + GG+ QMQ + + +IL+ATPGRL+D N + F L+ILVLDE
Sbjct: 97 GRHLP-LKSAVVFGGVKINPQMQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ +LFSAT + +A+ + +P+ + V+
Sbjct: 156 ADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I + D+ K +L L+++ Q +VF TK A+ +A LN G AA +H
Sbjct: 216 RTVEQCI-YPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G ++ILVATD+AARGID+P + V N++LPK EDYVHRIGRT
Sbjct: 275 GNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
GRAG G A+SLV+ E + IER T+ +P + GFEP ++
Sbjct: 335 GRAGEVGKAISLVSAIEVPELFAIERLTQALLPRVNLAGFEPTNQL 380
>gi|90414421|ref|ZP_01222398.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum
3TCK]
gi|90324534|gb|EAS41090.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum
3TCK]
Length = 464
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 174/415 (41%), Positives = 237/415 (57%), Gaps = 35/415 (8%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ K GY P+ +Q QAIPA I G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MSFASLGLSAPILEAVAKQGYETPSPIQAQAIPAVIEGKDVMAAAQTGTGKTAGFTLPVL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ ++ R KP Q R LVLTPTRELA QV E
Sbjct: 61 ERLSNGP------------------------RVKPNQVRALVLTPTRELAAQVA---ESV 93
Query: 121 GLYMKKIKAIS--ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
LY K + S + GG+ QM L + ++L+ATPGRL+D N + F L++LVL
Sbjct: 94 ALYAKNLPLSSAVVFGGVKINPQMMRLRQGADVLVATPGRLLDLYNQRAVRFDQLEVLVL 153
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGFI DI K++ P RQ +LFSAT + +A+ + +P+ + V
Sbjct: 154 DEADRMLDMGFIRDIRKLLAVMPKQRQNLLFSATFSDEIRQLAKGLVNNPVEISVTPRNA 213
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ Q I VD N LL LL++ GQ +VFT TK A+ + L G AA
Sbjct: 214 TAPTVKQWICPVDKSRKAN-LLTKLLKENNWGQVLVFTKTKHGANRLTTHLEGRGIKAAA 272
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ Q AR + L N + I++LVATD+AARG+D+ + V N++LP EDYVHRIG
Sbjct: 273 IHGNKSQGARTKALANFKSNEIQVLVATDIAARGLDIEQLPQVVNFELPHVAEDYVHRIG 332
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE-----PKKRIRT 408
RTGRAG G A+SLV E ++ IER KQ +P E ++GFE P+ R+ T
Sbjct: 333 RTGRAGCEGQAISLVCADEYKDLAAIERLIKQVLPREQVSGFEAVNKLPESRLDT 387
>gi|283784562|ref|YP_003364427.1| ATP-dependent RNA helicase [Citrobacter rodentium ICC168]
gi|282948016|emb|CBG87580.1| putative ATP-dependent RNA helicase [Citrobacter rodentium ICC168]
Length = 451
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT VQ+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPEILRAIAEQGYREPTPVQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITQQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKRLAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL ++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRMTTPGYEPDPSIKA 384
>gi|218704175|ref|YP_002411694.1| ATP-dependent RNA helicase RhlE [Escherichia coli UMN026]
gi|293404097|ref|ZP_06648091.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1412]
gi|298379878|ref|ZP_06989483.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1302]
gi|300898284|ref|ZP_07116635.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 198-1]
gi|331662152|ref|ZP_08363075.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA143]
gi|417585601|ref|ZP_12236377.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_C165-02]
gi|422332390|ref|ZP_16413404.1| ATP-dependent RNA helicase rhlE [Escherichia coli 4_1_47FAA]
gi|432352753|ref|ZP_19596037.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE2]
gi|432400987|ref|ZP_19643741.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE26]
gi|432425043|ref|ZP_19667558.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE181]
gi|432459813|ref|ZP_19701970.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE204]
gi|432474903|ref|ZP_19716911.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE208]
gi|432488391|ref|ZP_19730277.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE213]
gi|432521485|ref|ZP_19758641.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE228]
gi|432536852|ref|ZP_19773769.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE235]
gi|432630413|ref|ZP_19866357.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE80]
gi|432640011|ref|ZP_19875851.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE83]
gi|432665080|ref|ZP_19900666.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE116]
gi|432773985|ref|ZP_20008271.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE54]
gi|432838408|ref|ZP_20071897.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE140]
gi|432885207|ref|ZP_20099802.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE158]
gi|432911150|ref|ZP_20117631.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE190]
gi|433017767|ref|ZP_20206028.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE105]
gi|433052168|ref|ZP_20239394.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE122]
gi|433067044|ref|ZP_20253870.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE128]
gi|433157777|ref|ZP_20342642.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE177]
gi|433177329|ref|ZP_20361779.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE82]
gi|433202290|ref|ZP_20386089.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE95]
gi|218431272|emb|CAR12150.1| RNA helicase [Escherichia coli UMN026]
gi|291428683|gb|EFF01708.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1412]
gi|298279576|gb|EFI21084.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1302]
gi|300358073|gb|EFJ73943.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 198-1]
gi|331060574|gb|EGI32538.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA143]
gi|345340250|gb|EGW72669.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_C165-02]
gi|373246701|gb|EHP66153.1| ATP-dependent RNA helicase rhlE [Escherichia coli 4_1_47FAA]
gi|430877681|gb|ELC01115.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE2]
gi|430927585|gb|ELC48148.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE26]
gi|430958277|gb|ELC76871.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE181]
gi|430991096|gb|ELD07512.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE204]
gi|431008411|gb|ELD23212.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE208]
gi|431023274|gb|ELD36471.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE213]
gi|431044549|gb|ELD54821.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE228]
gi|431072429|gb|ELD80180.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE235]
gi|431173448|gb|ELE73524.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE80]
gi|431184527|gb|ELE84284.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE83]
gi|431203485|gb|ELF02142.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE116]
gi|431319983|gb|ELG07635.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE54]
gi|431390874|gb|ELG74522.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE140]
gi|431419190|gb|ELH01548.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE158]
gi|431443866|gb|ELH24891.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE190]
gi|431536139|gb|ELI12470.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE105]
gi|431574944|gb|ELI47701.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE122]
gi|431589985|gb|ELI61099.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE128]
gi|431681153|gb|ELJ46959.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE177]
gi|431709238|gb|ELJ73708.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE82]
gi|431725326|gb|ELJ89181.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE95]
Length = 454
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVMEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|422377585|ref|ZP_16457824.1| ATP-dependent RNA helicase RhlE, partial [Escherichia coli MS 60-1]
gi|324011108|gb|EGB80327.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 60-1]
Length = 438
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|300947123|ref|ZP_07161337.1| DEAD/DEAH box helicase, partial [Escherichia coli MS 116-1]
gi|300453201|gb|EFK16821.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
Length = 433
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|421355237|ref|ZP_15805568.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE-45]
gi|395949907|gb|EJH60526.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE-45]
Length = 464
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 170/406 (41%), Positives = 241/406 (59%), Gaps = 26/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S+GL +LKA+ + GY P+ +Q QAIPA ++G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
A K P ++ N Q R L+LTPTRELA Q+ Y
Sbjct: 61 ELLA----KGPKVRAN--------------------QVRALILTPTRELAAQIQDNVMLY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +K+ + GG+ QMQ + + +IL+ATPGRL+D N + F L+ILVLDE
Sbjct: 97 GRHLP-LKSAVVFGGVKINPQMQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ +LFSAT + +A+ + +P+ + V+
Sbjct: 156 ADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I + D+ K +L L+++ Q +VF TK A+ +A LN G AA +H
Sbjct: 216 RTVEQCI-YPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G ++ILVATD+AARGID+P + V N++LPK EDYVHRIGRT
Sbjct: 275 GNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
GRAG G A+SLV+ E + IER T+ +P + GFEP ++
Sbjct: 335 GRAGEVGKAISLVSAIEAPELFAIERLTQALLPRINLAGFEPTNQL 380
>gi|293409172|ref|ZP_06652748.1| conserved hypothetical protein [Escherichia coli B354]
gi|291469640|gb|EFF12124.1| conserved hypothetical protein [Escherichia coli B354]
Length = 454
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVMEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|424659938|ref|ZP_18097186.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE-16]
gi|408051247|gb|EKG86354.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE-16]
Length = 459
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 171/406 (42%), Positives = 240/406 (59%), Gaps = 26/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S+GL +LKA+ + GY P+ +Q QAIPA ++G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
A K P ++ N Q R L+LTPTRELA Q+ Y
Sbjct: 61 ELLA----KGPKVRAN--------------------QVRALILTPTRELAAQIQDNVRIY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ A+ + GG+ QMQ + + +IL+ATPGRL+D N + F L+ILVLDE
Sbjct: 97 GRHLPLSSAV-VFGGVKINPQMQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ +LFSAT + +A+ + +P+ + V+
Sbjct: 156 ADRMLDMGFIRDIRKILKLLPAKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I + D+ K +L L+++ Q +VF TK A+ +A LN G AA +H
Sbjct: 216 RTVEQCI-YPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G I+ILVATD+AARGID+P + V N++LPK EDYVHRIGRT
Sbjct: 275 GNKSQGARTRALADFKAGDIRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
GRAG G A+SLV+ E + IER T+ +P + GFEP ++
Sbjct: 335 GRAGEVGKAISLVSAIEAPELFAIERLTQALLPRVNLAGFEPTNQL 380
>gi|422307647|ref|ZP_16394803.1| type III restriction enzyme, res subunit [Vibrio cholerae
CP1035(8)]
gi|408619161|gb|EKK92199.1| type III restriction enzyme, res subunit [Vibrio cholerae
CP1035(8)]
Length = 464
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 170/406 (41%), Positives = 241/406 (59%), Gaps = 26/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S+GL +LKA+ + GY P+ +Q QAIPA ++G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
A K P ++ N Q R L+LTPTRELA Q+ Y
Sbjct: 61 ELLA----KGPKVRAN--------------------QVRALILTPTRELAAQIQDNVMLY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +K+ + GG+ QMQ + + +IL+ATPGRL+D N + F L+ILVLDE
Sbjct: 97 GRHLP-LKSAVVFGGVKINPQMQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ +LFSAT + +A+ + +P+ + V+
Sbjct: 156 ADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I + D+ K +L L+++ Q +VF TK A+ +A LN G AA +H
Sbjct: 216 RTVEQCI-YPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G ++ILVATD+AARGID+P + V N++LPK EDYVHRIGRT
Sbjct: 275 GNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
GRAG G A+SLV+ E + IER T+ +P + GFEP ++
Sbjct: 335 GRAGEVGKAISLVSAIEAPELFAIERLTQALLPRINLAGFEPTNQL 380
>gi|410944765|ref|ZP_11376506.1| ATP-dependent RNA helicase [Gluconobacter frateurii NBRC 101659]
Length = 434
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 169/393 (43%), Positives = 236/393 (60%), Gaps = 25/393 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F + L E + KAL + GYT PT +Q AIP + GRDL+ +QTG+GKTAAF LP L
Sbjct: 3 SFAELNLAEPIQKALAEEGYTTPTPIQAGAIPHLLEGRDLLGLAQTGTGKTAAFALPILD 62
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
Y + R P R+LVL PTRELA Q+ + Y
Sbjct: 63 -----------------------YLLRNRRPPAPKTVRVLVLAPTRELASQIDESFGAYA 99
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+MK A+ + GG+ RQ++ R ++L+A PGRL+D + G I+ S L++LVLDEA
Sbjct: 100 RHMKLSHAV-VFGGVGQGRQIEATRRGVDVLVAAPGRLLDLVGQGYIDLSALEVLVLDEA 158
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGF+ DI +I+ P RQT+LFSAT+ + ++A ++ DP ++V
Sbjct: 159 DRMLDMGFVRDIRRIMALLPERRQTVLFSATMPQSISDLAHSLLSDPATVQVTPESSTVD 218
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
I Q+++FV+ K+ L L+ V +AVVFT K +A+ +A+ LN +G A +HG
Sbjct: 219 RIRQAVMFVESEKKKDATL-MLVESSNVVRAVVFTLMKHEANKVAEFLNKNGITAEAIHG 277
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ Q AR R + R G +K+LVATD+AARGIDV ++HVFNYDLP PE YVHRIGRT
Sbjct: 278 NKSQGARERAMSGFRNGTVKVLVATDIAARGIDVDDVSHVFNYDLPNVPESYVHRIGRTA 337
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
RAGR+G+AVSL + +R +K IE+ + IP+
Sbjct: 338 RAGRDGWAVSLCDAEQRAWLKDIEKKIDKAIPV 370
>gi|375259807|ref|YP_005018977.1| ATP-dependent RNA helicase RhlE [Klebsiella oxytoca KCTC 1686]
gi|397656870|ref|YP_006497572.1| ATP-dependent RNA helicase RhlE [Klebsiella oxytoca E718]
gi|402843597|ref|ZP_10891991.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. OBRC7]
gi|423102058|ref|ZP_17089760.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5242]
gi|365909285|gb|AEX04738.1| ATP-dependent RNA helicase RhlE [Klebsiella oxytoca KCTC 1686]
gi|376389954|gb|EHT02641.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5242]
gi|394345401|gb|AFN31522.1| ATP-dependent RNA helicase RhlE [Klebsiella oxytoca E718]
gi|402276707|gb|EJU25808.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. OBRC7]
Length = 449
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 245/412 (59%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPEILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 H----KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
K +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLIQKEPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ ++++ + GG+ QM L +IL+ATPGRL+D + ++ +++L
Sbjct: 95 VRDYSKYLN-VRSLVVFGGVSINPQMMKLRSGVDILVATPGRLLDLEHQNAVSLDKVEVL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + ++AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPARRQNLLFSATFSDDIKSLAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ ++Q + FVD K LL ++ + Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVSQLVHFVDK-KRKRELLSQMIGEGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E + IER K++IP + G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLHDIERLLKKEIPRIALAGYEPDPSIKA 384
>gi|384222064|ref|YP_005613230.1| dead-box ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA
6]
gi|354960963|dbj|BAL13642.1| dead-box ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA
6]
Length = 522
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 169/395 (42%), Positives = 240/395 (60%), Gaps = 26/395 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F+ GL E + +AL + Y PT +Q Q IP A++GRD++ +QTG+GKTA+F LP LH
Sbjct: 3 SFQDFGLAEPIARALAEENYVTPTPIQAQTIPTALTGRDVVGIAQTGTGKTASFALPILH 62
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ + R++ +P R+LVL+PTREL+ Q+ + YG
Sbjct: 63 RLL-----------------------ENRIKPQPKTCRVLVLSPTRELSGQILDSFNAYG 99
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+++ ++I GG+P RQ++ L ++L+ATPGRL+D + S + ++ LVLDEA
Sbjct: 100 RHIRLSSTLAI-GGVPMGRQVRALMPGLDVLVATPGRLLDLVQSNGLKLGSVEFLVLDEA 158
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGFINDI KIV P+ RQT+ FSAT+ + +A+ + +DP + V + +
Sbjct: 159 DRMLDMGFINDIRKIVAKLPIKRQTLFFSATMPKDIAELADAMLRDPARVAVTPVSSTAE 218
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
I Q I+ VD K L LL+D+ V +A+VFT TK AD + L +G A+ +HG
Sbjct: 219 RINQRIIQVD-FSAKPAFLTKLLKDEPVNRALVFTRTKHGADKVVKTLEKAGIAASAIHG 277
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ QN R RTL R G I+ LVATD+AARGIDV I+HV N+DLP PE YVHRIGRT
Sbjct: 278 NKSQNHRERTLAQFRSGEIRTLVATDIAARGIDVDGISHVINFDLPNVPETYVHRIGRTA 337
Query: 362 RAGRNGFAVSLVNHAERMN-IKKIERFTKQQIPIE 395
RAG +G A+SLV E ++ ++ IER K +P E
Sbjct: 338 RAGADGTAISLVAGGEELSYLRDIERLIKVALPRE 372
>gi|238913888|ref|ZP_04657725.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
Length = 455
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 243/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITHQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + ++PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLRNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL ++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTPGYEPDPSIKA 384
>gi|145589523|ref|YP_001156120.1| DEAD/DEAH box helicase [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|145047929|gb|ABP34556.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 426
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 172/402 (42%), Positives = 243/402 (60%), Gaps = 25/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F +GL E +L+A+ + GYT PT +Q ++IPA + G DL+ ++QTG+GKTA F LP L
Sbjct: 1 MLFTDLGLSEPILRAIAEEGYTSPTPIQAKSIPAVLKGGDLLAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ +S K + K LR +L+LTPTRELA QV + Y
Sbjct: 61 QRLSSIKAS----------------SGKRVLR-------VLILTPTRELAAQVQESVVTY 97
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y +K+ I GG+ Q++ ++ +IL+ATPGRL+D M+ ++ + ++ILVLDE
Sbjct: 98 GKYTG-LKSTVIFGGVGANPQIKAIAAGLDILVATPGRLLDLMSQKCVSLNDIEILVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF+ DI+KI+ A P RQ +LFSAT + +A+ + P +++V
Sbjct: 157 ADRMLDMGFLRDIKKILAALPKQRQNLLFSATFSTEIKALADGLLNKPELIEVARSNSAN 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q I VD K+ LL +L++ Q +VFT TK A+ + +L G + +H
Sbjct: 217 EAIAQLIHPVDRN-QKHPLLAHLIKSNDWKQVLVFTRTKHGANKLVTQLEKDGITSMAIH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + L + + G++ LVATD+AARGID+ + HV NYDLP EDYVHRIGRT
Sbjct: 276 GNKSQTARTKALADFKAGKLTALVATDIAARGIDIDQLPHVVNYDLPNVSEDYVHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG NG AVSLV E ++ IE+ KQ++P EVI GFEP
Sbjct: 336 GRAGSNGVAVSLVCVDEHQMLRDIEKLIKQKLPQEVIAGFEP 377
>gi|215485885|ref|YP_002328316.1| ATP-dependent RNA helicase RhlE [Escherichia coli O127:H6 str.
E2348/69]
gi|312969182|ref|ZP_07783389.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 2362-75]
gi|417754655|ref|ZP_12402746.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC2B]
gi|418995949|ref|ZP_13543556.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC1A]
gi|419001015|ref|ZP_13548567.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC1B]
gi|419006513|ref|ZP_13553966.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC1C]
gi|419012350|ref|ZP_13559714.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC1D]
gi|419017347|ref|ZP_13564666.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC1E]
gi|419022935|ref|ZP_13570176.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC2A]
gi|419027809|ref|ZP_13575002.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC2C]
gi|419033704|ref|ZP_13580800.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC2D]
gi|419038617|ref|ZP_13585671.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC2E]
gi|215263957|emb|CAS08297.1| RNA helicase [Escherichia coli O127:H6 str. E2348/69]
gi|312286584|gb|EFR14497.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 2362-75]
gi|377847939|gb|EHU12936.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC1A]
gi|377849589|gb|EHU14558.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC1C]
gi|377852750|gb|EHU17664.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC1B]
gi|377861973|gb|EHU26787.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC1D]
gi|377865803|gb|EHU30593.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC1E]
gi|377867945|gb|EHU32694.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC2A]
gi|377878098|gb|EHU42686.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC2B]
gi|377882881|gb|EHU47412.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC2D]
gi|377884294|gb|EHU48807.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC2C]
gi|377897502|gb|EHU61881.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC2E]
Length = 453
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QYLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|332286324|ref|YP_004418235.1| ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
gi|330430277|gb|AEC21611.1| putative ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
Length = 477
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 166/400 (41%), Positives = 238/400 (59%), Gaps = 24/400 (6%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F S+GL E +L+A+ GY PT +Q QAIP + G DL+ ++QTG+GKTA F LP LH+
Sbjct: 7 FASLGLAEPLLRAVTDTGYEHPTPIQAQAIPQVMQGGDLLAAAQTGTGKTAGFTLPILHR 66
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
+ +N Q KP QPR+L+LTPTREL QV + Y
Sbjct: 67 ----------LLQNPAQGR------------KPGQPRVLILTPTRELTAQVEESVRTYSK 104
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+ I+++ + GG+ Q+ L + +IL+ATPGRL+DH ++ S ++ILVLDEAD
Sbjct: 105 HTS-IRSMVMFGGVNINPQISALRKPLDILVATPGRLLDHAQQKTVDLSAVEILVLDEAD 163
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLDMGFI DI +I+ P RQ +LFSAT + +++ + DP+ + V +
Sbjct: 164 RMLDMGFIRDIRRILALLPKQRQNLLFSATFSDEIRALSKGVLNDPIEISVARRNTASEL 223
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
+ QS++ + HK LL +++R+ Q +VFT TK A+ +A++L G AA +HG+
Sbjct: 224 VEQSVVLTEQA-HKRDLLSHIIRESGWHQVLVFTRTKHGANRLAEKLVKDGLSAAAIHGN 282
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
Q AR R L + G++ +LVATD+AARGID+ + HV N++LP PEDYVHRIGRTGR
Sbjct: 283 KSQAARTRALAGFKDGKVAVLVATDIAARGIDIDQLPHVVNFELPNVPEDYVHRIGRTGR 342
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
AG G A+SLV+ E + IE+ K+ I I G+ P
Sbjct: 343 AGSTGSAMSLVDRTEIKLLSAIEKLIKRPIERTTIEGWSP 382
>gi|153829646|ref|ZP_01982313.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 623-39]
gi|148874874|gb|EDL73009.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 623-39]
Length = 464
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 170/402 (42%), Positives = 239/402 (59%), Gaps = 26/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S+GL +LKA+ + GY P+ +Q QAIPA ++G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
A K P ++ N Q R L+LTPTRELA Q+ Y
Sbjct: 61 ELLA----KGPKVRAN--------------------QVRALILTPTRELAAQIQDNVMLY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +K+ + GG+ QMQ + + +IL+ATPGRL+D N + F L+ILVLDE
Sbjct: 97 GRHLP-LKSAVVFGGVKINPQMQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ +LFSAT + +A+ + +P+ + V+
Sbjct: 156 ADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I + D+ K +L L+++ Q +VF TK A+ +A LN G AA +H
Sbjct: 216 RTVEQCI-YPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G ++ILVATD+AARGID+P + V N++LPK EDYVHRIGRT
Sbjct: 275 GNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G A+SLV+ E + IER T+ +P + GFEP
Sbjct: 335 GRAGEVGKAISLVSAIEAPELFAIERLTQALLPRVNLAGFEP 376
>gi|153825002|ref|ZP_01977669.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-2]
gi|149741327|gb|EDM55361.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-2]
Length = 464
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 170/402 (42%), Positives = 239/402 (59%), Gaps = 26/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S+GL +LKA+ + GY P+ +Q QAIPA ++G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
A K P ++ N Q R L+LTPTRELA Q+ Y
Sbjct: 61 ELLA----KGPKVRAN--------------------QVRALILTPTRELAAQIQDNVMLY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +K+ + GG+ QMQ + + +IL+ATPGRL+D N + F L+ILVLDE
Sbjct: 97 GRHLP-LKSAVVFGGVKINPQMQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ +LFSAT + +A+ + +P+ + V+
Sbjct: 156 ADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I + D+ K +L L+++ Q +VF TK A+ +A LN G AA +H
Sbjct: 216 RTVEQCI-YPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G ++ILVATD+AARGID+P + V N++LPK EDYVHRIGRT
Sbjct: 275 GNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G A+SLV+ E + IER T+ +P + GFEP
Sbjct: 335 GRAGEVGKAISLVSAIEAPELFAIERLTQALLPRVNLAGFEP 376
>gi|374292975|ref|YP_005040010.1| ATP-dependent RNA helicase [Azospirillum lipoferum 4B]
gi|357424914|emb|CBS87794.1| ATP-dependent RNA helicase [Azospirillum lipoferum 4B]
Length = 506
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 171/395 (43%), Positives = 238/395 (60%), Gaps = 25/395 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F +GL E +L+A+ + GY+ T +Q AIP ++GRD++ +QTG+GKTAAF LP L
Sbjct: 3 EFSGLGLIEPLLRAVAEEGYSTATPIQAGAIPLLLAGRDVLGLAQTGTGKTAAFTLPIL- 61
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+++ +K+R+ K PR L+LTPTRELALQ+ + YG
Sbjct: 62 --------------------QRLFQNKKRVAAK--SPRTLILTPTRELALQIGDSFTTYG 99
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
++ I+ I GG+ Q+ ++R E+L+ATPGRL+D M + +++ VLDEA
Sbjct: 100 RHLP-IRRTVIHGGVGQSPQVAAIARGTEVLIATPGRLLDLMAQNHVRLDQIEVFVLDEA 158
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGFI D+ K+V P RQT+LFSAT+ V ++A +I D ++V +
Sbjct: 159 DRMLDMGFIRDVRKVVAVLPKERQTLLFSATMPDAVVDLANSILTDAERIEVTPQSTTVE 218
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
I Q +LFV+ K RLL LL D + + +VF TK AD IAD L +G A +HG
Sbjct: 219 RINQRVLFVERS-DKRRLLADLLEDSAMARTIVFARTKHGADRIADHLKKAGIAADAIHG 277
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
D Q+AR R LE+ R G ++ LVATD+AARGID+ I+HV N+DLP PE YVHRIGRT
Sbjct: 278 DKSQSARVRALESFRAGELRALVATDIAARGIDIDGISHVINFDLPNEPESYVHRIGRTA 337
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEV 396
RAG +G AVS +H E +K IE+ +Q IP +
Sbjct: 338 RAGTDGSAVSFCDHEEVGYLKDIEKTIRQPIPADT 372
>gi|408374555|ref|ZP_11172240.1| DEAD/DEAH box helicase [Alcanivorax hongdengensis A-11-3]
gi|407765513|gb|EKF73965.1| DEAD/DEAH box helicase [Alcanivorax hongdengensis A-11-3]
Length = 452
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 169/404 (41%), Positives = 244/404 (60%), Gaps = 26/404 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F ++GL + +L A+ + GYT+P+ +Q QAIPA + G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MSFSNLGLSDALLSAVAEKGYTQPSPIQAQAIPAVLDGKDVMAAAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ +H ++R Q R LVLTPTRELA QV + E Y
Sbjct: 61 ERL----------------------SHGPKVRHN--QVRALVLTPTRELAAQVAESVETY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G + +++ + GG+ QMQ L ++L+ATPGRL+D + F L+ILVLDE
Sbjct: 97 GKNLP-LRSTVVFGGVKINPQMQRLRGGVDVLVATPGRLLDLYQQNAVRFDQLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI KI+ P RQ ++FSAT + +A+ + P+ + V+
Sbjct: 156 ADRMLDMGFIHDIRKILAKLPPKRQNLMFSATFSPEIRALAKGLVNQPVEIDVSPRNTTT 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ +TQ I+ VD HK LL +L+ Q +VF+ TK A+ +A +L G AA +H
Sbjct: 216 ELVTQWIIPVDK-KHKPALLAHLINTHNWYQVLVFSRTKHGANRLAKQLEAGGIEAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ QNAR R L + + G+++ LVATD+AARG+D+ + V N DLP PEDYVHRIGRT
Sbjct: 275 GNKSQNARTRALADFKSGKLRALVATDIAARGLDIDQLPQVVNVDLPNLPEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKK 404
GRAG +G AVSLV+ E +K IER ++++ I+GF P +
Sbjct: 335 GRAGASGQAVSLVSADESKQLKDIERLIQKKLERRQIDGFVPSE 378
>gi|270260820|ref|ZP_06189093.1| ATP-dependent RNA helicase [Serratia odorifera 4Rx13]
gi|270044304|gb|EFA17395.1| ATP-dependent RNA helicase [Serratia odorifera 4Rx13]
Length = 452
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 169/408 (41%), Positives = 247/408 (60%), Gaps = 24/408 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+++GL +L+A+ + GY +PT +Q QAIP + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFETLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
SK+ P+ + +P R L+LTPTRELA Q+ E Y
Sbjct: 61 QLL--SKHDHPIKGR------------------RPV--RALILTPTRELAAQIGENVEAY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
+++ ++++ + GG+ QM L +IL+ATPGRL+D + ++ S ++ILVLDE
Sbjct: 99 SKHLR-LRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI +++ P RQ +LFSAT + +A + +P ++V
Sbjct: 158 ADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALANKLLHNPASVEVARRNTAS 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I QS+ FVD K LL ++ + Q +VF TK A+ +A++LN G AA +H
Sbjct: 218 EQIEQSVHFVDK-KRKRELLSQMIGEGDWKQVLVFNRTKHGANHLAEQLNKDGITAAAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G+I++LVATD+AARG+D+ + HV NY+LP PEDYVHRIGRT
Sbjct: 277 GNKSQGARTRALADFKDGKIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
GRA R G A+SLV E ++ IER K++IP + G+EP I+
Sbjct: 337 GRAERTGEAISLVCVDEHKLLRDIERLLKREIPRIALPGYEPDPSIKA 384
>gi|384918672|ref|ZP_10018741.1| ATP-dependent RNA helicase RhlE [Citreicella sp. 357]
gi|384467385|gb|EIE51861.1| ATP-dependent RNA helicase RhlE [Citreicella sp. 357]
Length = 487
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 167/409 (40%), Positives = 238/409 (58%), Gaps = 42/409 (10%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F + L+ VLKA+ + GY PT +Q AIP A+ GRD++ +QTG+GKTA+F LP +
Sbjct: 4 FSDLNLNPKVLKAIEEAGYETPTPIQAGAIPHALEGRDVLGIAQTGTGKTASFTLPMITS 63
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A R R + PR LVL PTRELA QV + Y
Sbjct: 64 LA-------------------------RGRARARMPRSLVLCPTRELAAQVAENFDTYAK 98
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
Y+K KA+ ++GG+ + Q L+ + ++L+ATPGRL+DH GK+ + ++++V+DEAD
Sbjct: 99 YVKLTKAL-LIGGVSFKEQETLIDKGVDVLIATPGRLLDHFERGKLILTDVKVMVVDEAD 157
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLDMGFI DIE+I TP TRQT+ FSAT+ + + +P ++V +
Sbjct: 158 RMLDMGFIPDIERIFSLTPFTRQTLFFSATMAPEIERITNTFLSNPERIEVARQASASET 217
Query: 243 ITQSILFVD------------DILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLN 290
ITQ +F DIL K L+D + A+VF K D D++A L
Sbjct: 218 ITQGAVFFKASRRDREATEKRDILRK--LID--MEGDACTNAIVFCNRKVDVDVVAKSLK 273
Query: 291 ISGFLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFP 350
G+ A P+HGDL Q+ R RTL+ R G I++L+A+DVAARG+DVP+++HVFN+D+P P
Sbjct: 274 KHGYNAEPIHGDLDQSQRTRTLDGFRDGSIRLLIASDVAARGLDVPSVSHVFNFDVPGHP 333
Query: 351 EDYVHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVING 399
EDYVHRIGRTGRAGR G A ++V+ + N +E+ ++ IP + G
Sbjct: 334 EDYVHRIGRTGRAGREGKAFTIVSGRDEKNFDAVEKLLQKDIPRVALPG 382
>gi|347537925|ref|YP_004845349.1| ATP-dependent RNA helicase [Pseudogulbenkiania sp. NH8B]
gi|345641102|dbj|BAK74935.1| ATP-dependent RNA helicase [Pseudogulbenkiania sp. NH8B]
Length = 560
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 169/401 (42%), Positives = 242/401 (60%), Gaps = 26/401 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F +GL E +L+A+ + GYT PT +Q QAIP I G DL+ ++QTG+GKTA F LP L
Sbjct: 4 IKFTDLGLSEPLLRAVAETGYTTPTPIQAQAIPQVIKGGDLLAAAQTGTGKTAGFTLPLL 63
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ + TH + +PR LVLTPTRELA QV + Y
Sbjct: 64 HRLGPAP------------------THLK------GRPRALVLTPTRELAAQVEESVRTY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ K++ + GG+ Q+ L + +IL+ATPGRL+DH ++ S ++ILVLDE
Sbjct: 100 GKYLPH-KSMVMFGGVGINPQIAALRKPLDILVATPGRLLDHAGQKTVDLSGVEILVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI+K++ P RQ +LFSAT + +A+ + +P +++V
Sbjct: 159 ADRMLDMGFIHDIKKVLALLPAKRQNLLFSATFSDEIKALADRLLNNPQLVEVARRNTAN 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q + VD K LL +L+ Q +VFT TK A+ +A++L+ SG AA +H
Sbjct: 219 ELVEQKVHLVDRD-KKTELLTHLISQGDWHQVLVFTRTKHGANRLAEKLDKSGITAAAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ QNAR + L + + +++LVATD+AARG+D+ + HV N++LP PEDYVHRIGRT
Sbjct: 278 GNKSQNARTKALADFKANTLQVLVATDIAARGLDIDQLPHVVNFELPNVPEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
GRAG G AVSLV E +K IE+ K+ IP + G+E
Sbjct: 338 GRAGNEGEAVSLVCVDEFKFLKDIEKLIKKDIPQFTVPGYE 378
>gi|404448789|ref|ZP_11013781.1| DNA/RNA helicase [Indibacter alkaliphilus LW1]
gi|403765513|gb|EJZ26391.1| DNA/RNA helicase [Indibacter alkaliphilus LW1]
Length = 398
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 164/394 (41%), Positives = 235/394 (59%), Gaps = 27/394 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F ++ L E +LKA+ + GYT PT +Q++AIP + G DL+ +QTG+GKTAAF +P +
Sbjct: 1 MAFNNLPLIEPILKAVAQEGYTTPTPIQQKAIPLVLDGNDLLGCAQTGTGKTAAFSIPII 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
++ K P +K L+LTPTRELA+Q+ + Y
Sbjct: 61 QLLSTQKQSRPGIK-------------------------ALILTPTRELAIQINESLASY 95
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G + K I+ I GG+ L Q L R +IL+ATPGRL+D +N I+ HL+I VLDE
Sbjct: 96 GKFTK-IRHTVIFGGVSQLHQTNALKRGVDILVATPGRLLDLINQKYIDLRHLEIFVLDE 154
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+D++K+++ P RQT+ FSAT+ + +A+ + K+P ++V
Sbjct: 155 ADRMLDMGFIHDVKKLINIIPTKRQTLFFSATMPSEIQKLADTLLKNPKYVEVTPPSSTV 214
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ ITQ + F + K +LL +LL + +G A+VF TK +D + L G AA +H
Sbjct: 215 EKITQKLYFTNKN-DKAKLLIHLLEKENIGSALVFGRTKHGSDKVVKLLQREGIKAAAIH 273
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ QNAR L + + G+I+ILVATD+AARGID+ + VFNYDLP PE YVHRIGRT
Sbjct: 274 GNKSQNARQNALNDFKNGKIRILVATDIAARGIDIDELATVFNYDLPNIPETYVHRIGRT 333
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
GRAG +G A+S + + IE+ +IP+
Sbjct: 334 GRAGNSGVAISFADQDTMKEYRDIEKLIGIKIPV 367
>gi|89072882|ref|ZP_01159439.1| putative ATP-dependent RNA helicase RhlE [Photobacterium sp. SKA34]
gi|89051404|gb|EAR56859.1| putative ATP-dependent RNA helicase RhlE [Photobacterium sp. SKA34]
Length = 496
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 169/402 (42%), Positives = 239/402 (59%), Gaps = 26/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ K GY KP+ +QEQAIPA ++G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MSFASLGLSAPILEAVAKQGYEKPSPIQEQAIPAILAGKDVMAAAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ A+ + P ++ R LVLTPTRELA QV + Y
Sbjct: 61 ERLANGR---PARSNHV---------------------RALVLTPTRELAAQVGESVATY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
++ A+ + GG+ QM + + ++L+ATPGRL+D + + F ++ILVLDE
Sbjct: 97 SKNLRLSSAV-VFGGVKVNPQMLRMRKGADVLVATPGRLMDLHSQNAVKFRDVEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ +LFSAT + +A+ + +P+ + VN +
Sbjct: 156 ADRMLDMGFIRDIRKILALLPKERQNLLFSATFSDEIRELAKGLVSNPVEIDVNPRNQTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I VD N LL LL + Q +VFT TK A+ +A L G AA +H
Sbjct: 216 RTVKQWICPVDQKKKPN-LLTKLLNKRNWKQVLVFTKTKHGANKLATHLESRGISAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + L N + G I++LVATD+AARG+D+ + V N+DLP EDYVHRIGRT
Sbjct: 275 GNKSQGARTKALANFKSGDIRVLVATDIAARGLDIEQLPQVVNFDLPHVAEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G A+SLV+ E ++ IER T+Q E+I GF+P
Sbjct: 335 GRAGCVGEAISLVSAEEAKDLAAIERLTQQVFEREIIEGFKP 376
>gi|344939864|ref|ZP_08779152.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
SV96]
gi|344261056|gb|EGW21327.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
SV96]
Length = 441
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 164/402 (40%), Positives = 245/402 (60%), Gaps = 24/402 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL + +LKA+ GY PT VQ++AIP + G+D++ +QTG+GKTA+F LP L
Sbjct: 1 MSFAQLGLADELLKAVADQGYVTPTPVQQKAIPLILEGKDVLAGAQTGTGKTASFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ A + + H+ KP + R L+L PTRELA QV + + Y
Sbjct: 61 QRLAENHD-----------------PHQ-----KPRRVRALILVPTRELAAQVYESVKTY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ A +++GG Q + L R +I++ATPGRLIDH+ IN S++++LVLDE
Sbjct: 99 GAHLP-FHAEAVVGGASIGIQTRQLRRGCDIVVATPGRLIDHVQQRNINLSNVEVLVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF+ DI++++ P RQ++LFSAT+ + ++A + +P+ ++V
Sbjct: 158 ADRMLDMGFLPDIKQLMALIPKKRQSLLFSATVPNAIKSLAAQLLNNPVEVEVAKQNATA 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+N+ + + + +K LL YL+ Q +VF TK AD + +L G A LH
Sbjct: 218 ENVAERVYGIGR-EYKRELLSYLIGSNNWKQVLVFVRTKHGADRLEKQLIEDGIRTAALH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD Q ARN+ LE + G++ +LVATD+AARG+D+ + HV N+D+P+ PEDY+HRIGRT
Sbjct: 277 GDKTQGARNKALEQFKTGKVSVLVATDIAARGLDIDDLPHVVNFDVPQVPEDYIHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG NG A+SLV E + +IE+ K+QIP G+EP
Sbjct: 337 GRAGANGEALSLVCPEEAWMLVEIEKLLKRQIPRVADTGYEP 378
>gi|171059329|ref|YP_001791678.1| DEAD/DEAH box helicase [Leptothrix cholodnii SP-6]
gi|170776774|gb|ACB34913.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
Length = 479
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 176/453 (38%), Positives = 260/453 (57%), Gaps = 25/453 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F +GL + +L+A+ + GY+ PT +Q QAIPA ++G DL+ +QTG+GKTA F LP L
Sbjct: 1 MTFDDLGLAQPILRAVHEEGYSIPTPIQAQAIPAVLAGGDLLAGAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
HK A+ + PV +N +PA R L+LTPTRELA QV + Y
Sbjct: 61 HKLAAGE---PVKNRN----------------GRPAI-RALILTPTRELAAQVEESVRTY 100
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y++ + ++ I GG+ Q+ L + +IL+ATPGRL+DH G I+ S +Q VLDE
Sbjct: 101 GKYLQ-LTSMVIFGGVGMGPQVDRLRKGVDILVATPGRLLDHHQQGTIDLSQVQFFVLDE 159
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF++DI+K++ P +Q++LFSAT + +A+ + P +++V
Sbjct: 160 ADRMLDMGFVHDIKKVLAIIPAKKQSLLFSATFSDEIKALADRLLNKPQVIEVARRNTTA 219
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q ++ V +K LL +L++ + Q +VFT K A+ + + LN + A +H
Sbjct: 220 ETIAQRVIKVGR-ENKKDLLAHLIKSQNWHQVLVFTRMKHGANRLCEFLNKNDISAMAIH 278
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + L + G + +LVATD+AARGID+ + HV NY+LP PEDYVHRIGRT
Sbjct: 279 GNKSQGARTKALAEFKTGDLTVLVATDIAARGIDIDMLPHVINYELPNVPEDYVHRIGRT 338
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT---YYSRYRFNN 417
GRAG G A+SLV E + IE+ K+ I EV+ GFEP R R N
Sbjct: 339 GRAGAQGEALSLVCVDEEGFLADIEKLIKRSIAREVVAGFEPDPGERAEPIQVGRRTLNG 398
Query: 418 NNWKTHNINKSNITKRFYRQIKKTSISASSKNS 450
H + + K +R ++ +S+ ++
Sbjct: 399 APRGAHRPSGNGAPKPTHRGGNSSAPRSSAGHA 431
>gi|427416341|ref|ZP_18906524.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 7375]
gi|425759054|gb|EKU99906.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 7375]
Length = 426
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 165/402 (41%), Positives = 248/402 (61%), Gaps = 25/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+++GL +L+A+ + GYT T +QEQAIP + G D+ S+QTG+GKTA F LP L
Sbjct: 1 MTFETLGLTAQLLRAVAEEGYTAATPIQEQAIPPILQGNDIFASAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ +S N T + PR L+LTPTRELA QV + Y
Sbjct: 61 QRLSS---------------NPPTKTQRA--------PRALILTPTRELAAQVNNSVNTY 97
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ IK++ + GG+ +RQ++ L + +I++ATPGRL+DH++ I+ S ++ LVLDE
Sbjct: 98 GKYLP-IKSVVVFGGVGIVRQIKALKQGSDIVVATPGRLLDHVSQHTIDLSQIETLVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
DRMLDMGFI+DI K++ P +RQT++FSAT + +A + +P+ ++V
Sbjct: 157 CDRMLDMGFIHDIRKVLAQLPASRQTLMFSATFSKAIRKLASTLLDNPVQIEVAPRNTAA 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q + VD K LL YL+ Q +VFT TK A+ +A++L G A +H
Sbjct: 217 EQVEQLVYPVDRT-RKRELLSYLIGFNNWQQVLVFTRTKHGANRLAEQLAKDGLKTAAIH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + ++ ++++LVATDVA+RG+D+ + HV N++LP PEDYVHRIGRT
Sbjct: 276 GNKSQAARTRALRDFKQSKVRVLVATDVASRGLDIDQLPHVVNFELPNVPEDYVHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G A+SLV+ E+ +K+IE+ K+++ V+ G+EP
Sbjct: 336 GRAGNEGQAISLVSSDEQSLLKRIEKLLKRKLTQSVLPGYEP 377
>gi|417539031|ref|ZP_12191433.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
enterica serovar Wandsworth str. A4-580]
gi|353665295|gb|EHD03472.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
enterica serovar Wandsworth str. A4-580]
Length = 453
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 243/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITHQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRAYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + ++PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLRNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL ++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTPGYEPDPSIKA 384
>gi|56414080|ref|YP_151155.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|167550495|ref|ZP_02344252.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|168240684|ref|ZP_02665616.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|168263681|ref|ZP_02685654.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|168466416|ref|ZP_02700278.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|194451116|ref|YP_002044848.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|197363003|ref|YP_002142640.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|198243732|ref|YP_002214783.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|207856257|ref|YP_002242908.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|375000580|ref|ZP_09724920.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
gi|375118271|ref|ZP_09763438.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Dublin str. SD3246]
gi|386590728|ref|YP_006087128.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. B182]
gi|416421869|ref|ZP_11689773.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|416431386|ref|ZP_11695540.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|416441634|ref|ZP_11701846.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|416445410|ref|ZP_11704299.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|416454128|ref|ZP_11710131.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|416459340|ref|ZP_11713849.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|416467278|ref|ZP_11717295.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|416481043|ref|ZP_11723099.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|416500446|ref|ZP_11731517.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|416505189|ref|ZP_11733623.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|416523109|ref|ZP_11740856.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|416530487|ref|ZP_11745013.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|416537766|ref|ZP_11749062.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|416546393|ref|ZP_11753879.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|416553658|ref|ZP_11757826.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|416560250|ref|ZP_11761079.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|416570320|ref|ZP_11765981.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|416578494|ref|ZP_11770614.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|416582432|ref|ZP_11772706.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|416593743|ref|ZP_11780149.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|416599470|ref|ZP_11783704.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|416604972|ref|ZP_11786593.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|416612620|ref|ZP_11791645.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|416620697|ref|ZP_11795886.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|416629582|ref|ZP_11800206.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|416643586|ref|ZP_11806084.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|416650093|ref|ZP_11810201.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|416654173|ref|ZP_11812137.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|416669875|ref|ZP_11819718.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|416679932|ref|ZP_11823189.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|416690487|ref|ZP_11825906.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|416707553|ref|ZP_11832651.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|416714851|ref|ZP_11838169.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|416716629|ref|ZP_11838976.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|416724879|ref|ZP_11845263.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|416730351|ref|ZP_11848602.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|416740514|ref|ZP_11854470.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|416756557|ref|ZP_11862643.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|416760825|ref|ZP_11865033.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|417371944|ref|ZP_12142365.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Inverness str. R8-3668]
gi|417454938|ref|ZP_12163427.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. S5-403]
gi|418483709|ref|ZP_13052715.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|418491688|ref|ZP_13058196.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|418494018|ref|ZP_13060478.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|418500025|ref|ZP_13066424.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|418501847|ref|ZP_13068223.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|418509664|ref|ZP_13075956.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
gi|418510917|ref|ZP_13077187.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
gi|418526685|ref|ZP_13092654.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
gi|418763606|ref|ZP_13319721.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|418765207|ref|ZP_13321297.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|418769492|ref|ZP_13325522.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|418773422|ref|ZP_13329406.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|418780105|ref|ZP_13335996.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|418783033|ref|ZP_13338884.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|418803660|ref|ZP_13359278.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|419727968|ref|ZP_14254936.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|419736759|ref|ZP_14263585.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|419738617|ref|ZP_14265377.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|419742538|ref|ZP_14269211.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|419747650|ref|ZP_14274154.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|419790882|ref|ZP_14316548.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|419794538|ref|ZP_14320150.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|421357993|ref|ZP_15808300.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|421364779|ref|ZP_15815010.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|421367454|ref|ZP_15817647.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|421370361|ref|ZP_15820527.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|421377806|ref|ZP_15827896.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|421382364|ref|ZP_15832411.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|421386100|ref|ZP_15836115.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|421392135|ref|ZP_15842096.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|421393025|ref|ZP_15842972.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|421398933|ref|ZP_15848837.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|421404842|ref|ZP_15854678.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|421407977|ref|ZP_15857783.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|421411212|ref|ZP_15860980.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|421419078|ref|ZP_15868774.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|421421358|ref|ZP_15871026.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|421424345|ref|ZP_15873988.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|421432250|ref|ZP_15881826.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|421434591|ref|ZP_15884140.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|421438819|ref|ZP_15888313.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|421446374|ref|ZP_15895786.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|421450861|ref|ZP_15900231.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|421569210|ref|ZP_16014914.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|421573437|ref|ZP_16019073.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|421580106|ref|ZP_16025667.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|421584754|ref|ZP_16030261.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
gi|436591026|ref|ZP_20512039.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|436667097|ref|ZP_20517358.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
gi|436801822|ref|ZP_20525138.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|436811759|ref|ZP_20530639.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|436816131|ref|ZP_20533682.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|436839279|ref|ZP_20537599.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|436851726|ref|ZP_20542325.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|436858488|ref|ZP_20547008.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|436865664|ref|ZP_20551631.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|436875162|ref|ZP_20557069.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|436879149|ref|ZP_20559540.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|436884969|ref|ZP_20562367.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|436896784|ref|ZP_20569540.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|436904121|ref|ZP_20574222.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|436911286|ref|ZP_20577115.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|436918637|ref|ZP_20581783.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|436930853|ref|ZP_20589078.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|436933091|ref|ZP_20589530.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|436942428|ref|ZP_20595374.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|436947983|ref|ZP_20598389.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|436963604|ref|ZP_20605881.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|436969786|ref|ZP_20608701.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|436977489|ref|ZP_20612267.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|436995584|ref|ZP_20619309.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|437005335|ref|ZP_20622427.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|437022924|ref|ZP_20628789.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|437032228|ref|ZP_20631872.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|437041852|ref|ZP_20635757.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|437050076|ref|ZP_20640357.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|437055377|ref|ZP_20643520.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|437068567|ref|ZP_20650698.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|437077641|ref|ZP_20655540.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|437086984|ref|ZP_20660993.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|437088622|ref|ZP_20661659.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|437108580|ref|ZP_20667547.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|437124198|ref|ZP_20673269.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|437134169|ref|ZP_20678593.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|437138041|ref|ZP_20680771.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|437147658|ref|ZP_20686940.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|437156209|ref|ZP_20692134.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|437161668|ref|ZP_20695604.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|437166399|ref|ZP_20698052.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|437179723|ref|ZP_20705574.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|437184726|ref|ZP_20708577.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|437207742|ref|ZP_20712669.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
gi|437260816|ref|ZP_20717886.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|437267035|ref|ZP_20721001.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|437276394|ref|ZP_20726403.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|437300726|ref|ZP_20733150.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|437311289|ref|ZP_20735884.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|437320056|ref|ZP_20738223.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|437336531|ref|ZP_20743138.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|437420194|ref|ZP_20754571.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|437447978|ref|ZP_20759146.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 40-18]
gi|437467994|ref|ZP_20764636.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|437473851|ref|ZP_20765958.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|437489679|ref|ZP_20770464.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|437512856|ref|ZP_20777411.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|437528012|ref|ZP_20780039.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|437556151|ref|ZP_20784988.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|437579691|ref|ZP_20791741.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|437596113|ref|ZP_20796163.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|437607079|ref|ZP_20800097.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|437621948|ref|ZP_20804458.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|437640751|ref|ZP_20807826.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|437659148|ref|ZP_20812075.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|437690308|ref|ZP_20820226.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|437712843|ref|ZP_20827219.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|437735588|ref|ZP_20832484.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
gi|437782952|ref|ZP_20836607.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|437804095|ref|ZP_20838764.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|438089517|ref|ZP_20860192.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|438104757|ref|ZP_20866021.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|438114074|ref|ZP_20869850.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|445139834|ref|ZP_21384592.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|445152653|ref|ZP_21390929.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
gi|445177694|ref|ZP_21397816.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|445197126|ref|ZP_21400661.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
gi|445227809|ref|ZP_21404421.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|445340930|ref|ZP_21416592.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|445348207|ref|ZP_21419576.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|445367477|ref|ZP_21425604.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
gi|56128337|gb|AAV77843.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|194409420|gb|ACF69639.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|195631083|gb|EDX49669.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|197094480|emb|CAR59997.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|197938248|gb|ACH75581.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|205324518|gb|EDZ12357.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|205339744|gb|EDZ26508.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|205347690|gb|EDZ34321.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|206708060|emb|CAR32351.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|322616296|gb|EFY13205.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322619546|gb|EFY16421.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322622758|gb|EFY19603.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322628670|gb|EFY25457.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322631607|gb|EFY28363.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322637134|gb|EFY33837.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322641666|gb|EFY38302.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322644539|gb|EFY41079.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322654208|gb|EFY50531.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322658123|gb|EFY54390.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322663597|gb|EFY59799.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322670333|gb|EFY66473.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322671569|gb|EFY67691.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322676925|gb|EFY72992.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322682850|gb|EFY78869.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322686529|gb|EFY82511.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323194574|gb|EFZ79767.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323199095|gb|EFZ84191.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323202050|gb|EFZ87109.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323213909|gb|EFZ98679.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323215239|gb|EFZ99984.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323220842|gb|EGA05280.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323227299|gb|EGA11467.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323229917|gb|EGA14040.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323233142|gb|EGA17238.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323240877|gb|EGA24919.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323243194|gb|EGA27214.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323248733|gb|EGA32661.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323251737|gb|EGA35604.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323261448|gb|EGA45029.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323267879|gb|EGA51358.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|326622538|gb|EGE28883.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Dublin str. SD3246]
gi|353075268|gb|EHB41028.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
gi|353606659|gb|EHC60830.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Inverness str. R8-3668]
gi|353635043|gb|EHC81466.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. S5-403]
gi|363550756|gb|EHL35082.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|363550939|gb|EHL35264.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|363556123|gb|EHL40338.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|363562577|gb|EHL46673.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|363562885|gb|EHL46973.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|363574925|gb|EHL58784.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|363575604|gb|EHL59454.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|366060253|gb|EHN24517.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|366060684|gb|EHN24944.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|366063265|gb|EHN27485.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|366069492|gb|EHN33615.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|366076294|gb|EHN40332.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|366077759|gb|EHN41768.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
gi|366085166|gb|EHN49056.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
gi|366828276|gb|EHN55163.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|372205293|gb|EHP18808.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
gi|381290433|gb|EIC31698.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|381301550|gb|EIC42606.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|381302017|gb|EIC43066.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|381313833|gb|EIC54612.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|381316617|gb|EIC57363.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|383797772|gb|AFH44854.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. B182]
gi|392612625|gb|EIW95094.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|392614840|gb|EIW97284.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|392733074|gb|EIZ90280.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|392739788|gb|EIZ96920.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|392741360|gb|EIZ98465.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|392750338|gb|EJA07307.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|392753796|gb|EJA10717.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|392758103|gb|EJA14979.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|392772755|gb|EJA29455.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|395983007|gb|EJH92201.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|395985974|gb|EJH95138.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|395989088|gb|EJH98223.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|395998083|gb|EJI07121.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|395998271|gb|EJI07303.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|396006913|gb|EJI15874.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|396009815|gb|EJI18738.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|396014719|gb|EJI23604.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|396019276|gb|EJI28133.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|396024689|gb|EJI33474.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|396029107|gb|EJI37846.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|396029377|gb|EJI38114.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|396036586|gb|EJI45245.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|396040673|gb|EJI49296.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|396046746|gb|EJI55329.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|396050641|gb|EJI59163.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|396060342|gb|EJI68788.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|396060399|gb|EJI68844.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|396061956|gb|EJI70369.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|396065357|gb|EJI73734.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|396072047|gb|EJI80362.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|402520585|gb|EJW27927.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|402527564|gb|EJW34825.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|402527696|gb|EJW34956.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|402530726|gb|EJW37940.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
gi|434957778|gb|ELL51385.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|434964390|gb|ELL57412.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|434974247|gb|ELL66635.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|434979916|gb|ELL71867.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|434980587|gb|ELL72508.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|434987028|gb|ELL78679.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|434990640|gb|ELL82190.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|434994753|gb|ELL86070.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|434996699|gb|ELL88015.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|435007132|gb|ELL97989.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|435013151|gb|ELM03811.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|435014459|gb|ELM05025.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
gi|435016673|gb|ELM07199.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|435017493|gb|ELM07995.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|435025531|gb|ELM15662.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|435030635|gb|ELM20644.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|435032508|gb|ELM22452.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|435042627|gb|ELM32344.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|435044146|gb|ELM33844.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|435048853|gb|ELM38409.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|435056721|gb|ELM46092.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|435058556|gb|ELM47877.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|435063026|gb|ELM52198.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|435070702|gb|ELM59684.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|435071675|gb|ELM60615.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|435076182|gb|ELM64978.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|435080164|gb|ELM68857.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|435085116|gb|ELM73670.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|435095058|gb|ELM83395.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|435095217|gb|ELM83535.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|435098719|gb|ELM86950.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|435103130|gb|ELM91233.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|435103345|gb|ELM91440.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|435116657|gb|ELN04392.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|435119369|gb|ELN06985.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|435119648|gb|ELN07250.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|435120552|gb|ELN08130.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|435133761|gb|ELN20917.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|435133978|gb|ELN21122.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|435136988|gb|ELN24060.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|435144725|gb|ELN31557.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|435150330|gb|ELN37008.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|435153057|gb|ELN39678.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|435160643|gb|ELN46906.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|435163272|gb|ELN49408.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|435173752|gb|ELN59221.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|435176187|gb|ELN61577.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|435178589|gb|ELN63796.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|435184051|gb|ELN68997.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|435197394|gb|ELN81679.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|435197600|gb|ELN81883.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|435201396|gb|ELN85308.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|435204891|gb|ELN88542.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
gi|435209245|gb|ELN92573.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 40-18]
gi|435215443|gb|ELN98130.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|435224774|gb|ELO06723.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|435230548|gb|ELO11854.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|435231681|gb|ELO12910.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|435241271|gb|ELO21636.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|435241692|gb|ELO22034.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|435246979|gb|ELO26966.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|435250443|gb|ELO30173.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|435254285|gb|ELO33688.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|435256168|gb|ELO35513.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|435270200|gb|ELO48704.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|435276700|gb|ELO54698.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|435281679|gb|ELO59339.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|435285984|gb|ELO63326.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
gi|435287126|gb|ELO64341.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|435299320|gb|ELO75472.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|435303024|gb|ELO78945.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|435316942|gb|ELO90018.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|435322053|gb|ELO94394.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|435329098|gb|ELP00551.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|444853132|gb|ELX78204.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|444853682|gb|ELX78750.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
gi|444855949|gb|ELX80988.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|444864050|gb|ELX88860.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
gi|444866719|gb|ELX91439.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|444871920|gb|ELX96307.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|444876342|gb|ELY00518.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|444882424|gb|ELY06390.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
Length = 453
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 243/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITHQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + ++PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLRNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL ++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTPGYEPDPSIKA 384
>gi|16759741|ref|NP_455358.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29142486|ref|NP_805828.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|213163843|ref|ZP_03349553.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|213424785|ref|ZP_03357535.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213854569|ref|ZP_03382809.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|378960234|ref|YP_005217720.1| ATP-dependent RNA helicase rhlE [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
gi|25385229|pir||AI0599 probable ATP-dependent RNA helicase rhlE STY0855 [imported] -
Salmonella enterica subsp. enterica serovar Typhi
(strain CT18)
gi|16502034|emb|CAD05267.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Typhi]
gi|29138117|gb|AAO69688.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|374354106|gb|AEZ45867.1| ATP-dependent RNA helicase rhlE [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
Length = 455
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 243/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITHQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + ++PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLRNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL ++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTPGYEPDPSIKA 384
>gi|414076887|ref|YP_006996205.1| ATP-dependent helicase [Anabaena sp. 90]
gi|413970303|gb|AFW94392.1| ATP-dependent helicase [Anabaena sp. 90]
Length = 446
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 165/400 (41%), Positives = 243/400 (60%), Gaps = 21/400 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F ++GL +++A+ + GY +PT +Q+QAIP ++G D++ +QTG+GKTA+F LP L
Sbjct: 1 MSFSNLGLSPEIVRAVTERGYNQPTPIQKQAIPVVLAGGDIMAGAQTGTGKTASFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ +++KN + +H F P R L+LTPTRELA QV + Y
Sbjct: 61 HRLSANKN---------------VPSHSTG--FSPI--RALILTPTRELAAQVQESVRDY 101
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ + ++ + GG+ Q Q L +IL++TPGRL+DH+ G +N S +++LVLDE
Sbjct: 102 GKYLN-LNSMVMFGGVSIGPQKQKLRTRVDILVSTPGRLLDHVQQGTLNLSRVEVLVLDE 160
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFINDI +I+ P RQ +LF AT V +A + +P +++V
Sbjct: 161 ADRMLDMGFINDIRRILSLLPKQRQNLLFFATFSDKVKTLAAGLVHNPTMIEVARRNVTA 220
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
I+Q + VD K +LL +L+++ Q +VF+ TK AD + +L A +H
Sbjct: 221 ATISQKVYHVDRD-RKRQLLSHLIQENNWYQVLVFSRTKHGADRLVKQLGEDRIQAMAIH 279
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR L + G +++LVATD+AARG+D+ + HV NYDLP PEDYVHRIGRT
Sbjct: 280 GNKSQGARTHALAKFKDGTLQVLVATDIAARGLDISELPHVINYDLPNVPEDYVHRIGRT 339
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGF 400
GRAG G A+SLV E + IE+ +Q++P EV+ GF
Sbjct: 340 GRAGAEGQAISLVCVDEHHLLADIEQLIQQRLPKEVVAGF 379
>gi|417356647|ref|ZP_12132146.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Give str. S5-487]
gi|353595575|gb|EHC52803.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Give str. S5-487]
Length = 463
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 243/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITHQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + ++PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLRNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL ++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTPGYEPDPSIKA 384
>gi|161614932|ref|YP_001588897.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|168230715|ref|ZP_02655773.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|168820033|ref|ZP_02832033.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|194471685|ref|ZP_03077669.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|200390413|ref|ZP_03217024.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|409249265|ref|YP_006885097.1| probable ATP-dependent RNA helicase DDX17 DEAD box protein 17;
RNA-dependent helicase p72; DEAD box protein p72
[Salmonella enterica subsp. enterica serovar Weltevreden
str. 2007-60-3289-1]
gi|161364296|gb|ABX68064.1| hypothetical protein SPAB_02686 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194458049|gb|EDX46888.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|199602858|gb|EDZ01404.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|205334823|gb|EDZ21587.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|205343118|gb|EDZ29882.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|320085093|emb|CBY94880.1| probable ATP-dependent RNA helicase DDX17 DEAD box protein 17;
RNA-dependent helicase p72; DEAD box protein p72
[Salmonella enterica subsp. enterica serovar Weltevreden
str. 2007-60-3289-1]
Length = 454
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 243/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITHQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + ++PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLRNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL ++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTPGYEPDPSIKA 384
>gi|437843415|ref|ZP_20846970.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SARB17]
gi|435295547|gb|ELO71998.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SARB17]
Length = 455
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 243/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITHQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + ++PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLRNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL ++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTPGYEPDPSIKA 384
>gi|16764183|ref|NP_459798.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|167992052|ref|ZP_02573150.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|374978841|ref|ZP_09720183.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|378444299|ref|YP_005231931.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Typhimurium str. D23580]
gi|378449185|ref|YP_005236544.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|378698757|ref|YP_005180714.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Typhimurium str. SL1344]
gi|378983416|ref|YP_005246571.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|378988204|ref|YP_005251368.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
gi|379700028|ref|YP_005241756.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|383495604|ref|YP_005396293.1| ATP-dependent RNA helicase rhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|422024961|ref|ZP_16371428.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|422029986|ref|ZP_16376224.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|427547193|ref|ZP_18926740.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|427563240|ref|ZP_18931505.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|427598123|ref|ZP_18940041.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|427628938|ref|ZP_18946004.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|427652236|ref|ZP_18950770.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|427660201|ref|ZP_18955720.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|427665329|ref|ZP_18960478.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
gi|16419327|gb|AAL19757.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|205329602|gb|EDZ16366.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|261246078|emb|CBG23880.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Typhimurium str. D23580]
gi|267992563|gb|ACY87448.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301157405|emb|CBW16894.1| hypothetical ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Typhimurium str. SL1344]
gi|312911844|dbj|BAJ35818.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|321226393|gb|EFX51444.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|323129127|gb|ADX16557.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|332987751|gb|AEF06734.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
gi|380462425|gb|AFD57828.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Typhimurium str. 798]
gi|414022550|gb|EKT06027.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|414022674|gb|EKT06146.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|414024129|gb|EKT07524.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|414026435|gb|EKT09705.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|414036371|gb|EKT19205.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|414050948|gb|EKT33096.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|414052210|gb|EKT34273.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|414056455|gb|EKT38280.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|414061189|gb|EKT42625.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
Length = 454
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 243/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITHQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + ++PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLRNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL ++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTPGYEPDPSIKA 384
>gi|427604256|ref|ZP_18941103.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|414041027|gb|EKT23616.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
Length = 453
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 243/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITHQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + ++PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLRNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL ++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTPGYEPDPSIKA 384
>gi|260776311|ref|ZP_05885206.1| ATP-dependent RNA helicase RhlE [Vibrio coralliilyticus ATCC
BAA-450]
gi|260607534|gb|EEX33799.1| ATP-dependent RNA helicase RhlE [Vibrio coralliilyticus ATCC
BAA-450]
Length = 483
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 170/402 (42%), Positives = 237/402 (58%), Gaps = 26/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F ++GL +LKA+ GY KP+ +QEQAIPA ++G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MGFTALGLSAPLLKAIDDQGYDKPSPIQEQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + R K R LVLTPTRELA QV +Y
Sbjct: 61 ERLDNG------------------------TRVKGNHVRALVLTPTRELAAQVQENVFKY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y +++ + + GG+ QM L + ++L+ATPGRL+D INFS L++LVLDE
Sbjct: 97 SRY-QRLTSNVVFGGVKINPQMTKLRKGTDVLVATPGRLLDLYQQNAINFSQLEVLVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ +LFSAT + +A+ + DP+ + VN
Sbjct: 156 ADRMLDMGFIRDIRKILALLPEKRQNLLFSATFSAEIRELAKGLVNDPVEVSVNPENSTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
I QSI + D K +L L++D Q +VF+ TK A+ ++ LN G AAP+H
Sbjct: 216 VTIEQSI-YPADKRKKAPMLVKLIKDGDWRQVLVFSRTKHGANRLSHYLNDQGITAAPIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + L + + G +++LVATD+AARGID+P + V N++LP EDYVHRIGRT
Sbjct: 275 GNKSQGARTKALADFKSGEVRVLVATDIAARGIDIPQLPQVVNFELPHVAEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G A+SLV AE + IER +Q +P + G++P
Sbjct: 335 GRAGEVGKAISLVEAAEASELFGIERLIQQVLPRLELEGYKP 376
>gi|237730773|ref|ZP_04561254.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. 30_2]
gi|226906312|gb|EEH92230.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. 30_2]
Length = 448
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 169/408 (41%), Positives = 244/408 (59%), Gaps = 24/408 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPEILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ NQ + K +P R L+LTPTRELA Q+ Y
Sbjct: 61 QHLIT------------NQPHGKSR--------RPV--RALILTPTRELAAQIGENVRDY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++ILVLDE
Sbjct: 99 SKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLIATPGRLLDLEHQNAVKLDQVEILVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI +++ P RQ +LFSAT + ++AE + +PL ++V
Sbjct: 158 ADRMLDMGFIHDIRRVLAKLPTKRQNLLFSATFSDDIKSLAEKLLHNPLEIEVARRNTAS 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ +TQ + FVD K LL ++ Q +VFT TK A+ +A++LN G +A +H
Sbjct: 218 EQVTQHVHFVDK-KRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHRIGRT
Sbjct: 277 GNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
GRA G A+SLV E ++ IE+ K++IP G+EP I+
Sbjct: 337 GRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIATPGYEPDPSIKA 384
>gi|345867959|ref|ZP_08819956.1| ATP-dependent RNA helicase rhlE [Bizionia argentinensis JUB59]
gi|344047610|gb|EGV43237.1| ATP-dependent RNA helicase rhlE [Bizionia argentinensis JUB59]
Length = 427
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 175/448 (39%), Positives = 251/448 (56%), Gaps = 40/448 (8%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M FK +GL + +LKA+ K GY KP+ +Q++AIP + GRD++ S+QTG+GKTA F LP L
Sbjct: 1 MTFKQLGLSDALLKAVSKQGYEKPSPIQQKAIPPVLEGRDVLASAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
I + E R +P R L+LTPTRELA QV +Y
Sbjct: 61 Q----------------------ILSQTETSRQRPI--RALILTPTRELAAQVHENVRQY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
+ ++++ I GG+ Q+ L+R ++L+ATPGRL+D N G I ++ILVLDE
Sbjct: 97 SEFTD-LRSLVIFGGVNQKPQVAALNRGVDVLVATPGRLLDLQNQGAICLRKIEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF+ DIE+I+ P RQ +LFSAT + +A I P++++
Sbjct: 156 ADRMLDMGFLRDIERIMALMPAKRQNLLFSATFSKDIKRLASGILNKPVLVEATPENSTV 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
ITQ + V K L+ L+ + Q +VF TK A+ + + SG AA +H
Sbjct: 216 DAITQKVYRVAK-GKKTGLIIKLISEGNWNQVLVFARTKHGANKLCKSMISSGITAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + L + G+I +LVATD+AARG+D+P + HV N++LP EDYVHRIGRT
Sbjct: 275 GNKSQGARTKALAGFKSGQISVLVATDIAARGLDIPLLPHVINFELPNISEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRYRFNNNNW 420
GRAG +G A+SLV+ E ++ IE+ ++IP+ ++ GFEP + N
Sbjct: 335 GRAGASGEAISLVSADETTFLRDIEKLVGEKIPVTILEGFEP--------------DPNA 380
Query: 421 KTHNINKSNITKRFYRQIKKTSISASSK 448
T I + R KKTS ++S K
Sbjct: 381 STQPIKQGQGRSNQSRGPKKTSDNSSKK 408
>gi|197247942|ref|YP_002145775.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|440761276|ref|ZP_20940363.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Agona str. SH11G1113]
gi|440766050|ref|ZP_20945053.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Agona str. SH08SF124]
gi|440771501|ref|ZP_20950417.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Agona str. SH10GFN094]
gi|197211645|gb|ACH49042.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|436421208|gb|ELP19056.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Agona str. SH10GFN094]
gi|436423881|gb|ELP21678.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Agona str. SH08SF124]
gi|436424985|gb|ELP22737.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Agona str. SH11G1113]
Length = 453
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 243/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITHQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + ++PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLRNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL ++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTPGYEPDPSIKA 384
>gi|386618245|ref|YP_006137825.1| ATP-dependent RNA helicase [Escherichia coli NA114]
gi|387828776|ref|YP_003348713.1| putative ATP-dependent RNA helicase [Escherichia coli SE15]
gi|432420873|ref|ZP_19663428.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE178]
gi|432499009|ref|ZP_19740785.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE216]
gi|432557779|ref|ZP_19794468.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE49]
gi|432693549|ref|ZP_19928760.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE162]
gi|432709596|ref|ZP_19944661.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE6]
gi|432918019|ref|ZP_20122424.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE173]
gi|432925309|ref|ZP_20127338.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE175]
gi|432980270|ref|ZP_20169048.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE211]
gi|433095692|ref|ZP_20281903.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE139]
gi|433104902|ref|ZP_20290920.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE148]
gi|281177933|dbj|BAI54263.1| putative ATP-dependent RNA helicase [Escherichia coli SE15]
gi|333968746|gb|AEG35551.1| ATP-dependent RNA helicase [Escherichia coli NA114]
gi|430946490|gb|ELC66413.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE178]
gi|431031680|gb|ELD44418.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE216]
gi|431093857|gb|ELD99513.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE49]
gi|431236215|gb|ELF31428.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE162]
gi|431251298|gb|ELF45315.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE6]
gi|431446200|gb|ELH26949.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE173]
gi|431448030|gb|ELH28748.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE175]
gi|431493165|gb|ELH72759.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE211]
gi|431618950|gb|ELI87878.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE139]
gi|431633658|gb|ELJ01921.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE148]
Length = 453
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAILGYEPDPSIKA 384
>gi|163750030|ref|ZP_02157274.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
gi|161330304|gb|EDQ01285.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
Length = 436
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 165/404 (40%), Positives = 250/404 (61%), Gaps = 14/404 (3%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F S+ L +L+ L +GY++PT +Q QAIPA ++G+D++ +QTGSGKTAAF LP LH
Sbjct: 12 GFSSLSLRPELLQVLTALGYSQPTPIQTQAIPAILAGQDIMAGAQTGSGKTAAFSLPILH 71
Query: 62 KFASSKNKIPVMK---KNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATE 118
K P+++ KN ++ + +R R LVLTPTRELALQV +
Sbjct: 72 KLTE-----PLLRLDEKNQQESEAPSCSQVPAIR----AIRALVLTPTRELALQVHGSFV 122
Query: 119 RYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVL 178
+Y + ++K+ + GG+ Q Q+L+ +IL+ATPGRL+DH+ G ++ S L+ LV
Sbjct: 123 KYA-KLTQLKSALVYGGVSIDAQAQILAAGVDILVATPGRLLDHLRRGSMSLSELEFLVF 181
Query: 179 DEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEK 238
DEADRMLDMGF ++I+ IV P TRQT+LFSAT D + +++++ +DP ++V
Sbjct: 182 DEADRMLDMGFKDEIDAIVKQLPKTRQTLLFSATFDESLYGLSQSLLRDPKRIEVGERNA 241
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
I Q + VD K L+ +L+ ++ Q ++F+ K AD +A L +G A
Sbjct: 242 AAVEIEQRVYAVDSD-RKLALITHLIESGKLQQVLIFSRKKVAADKLAANLTKAGIGAQA 300
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
HGDL Q AR + L++ + G +++LVATDVAARGID+ + +V NY+LP EDYVHRIG
Sbjct: 301 FHGDLSQGAREKVLQSFKDGEVRVLVATDVAARGIDIIDLNYVVNYELPYKAEDYVHRIG 360
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
RTGRAG G A++L+ + ++++E +++P + + GFEP
Sbjct: 361 RTGRAGNKGVAITLLCREDEHLLEEVEVVLDKRLPQQWLAGFEP 404
>gi|455643914|gb|EMF23035.1| ATP-dependent RNA helicase RhlE [Citrobacter freundii GTC 09479]
Length = 448
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 169/408 (41%), Positives = 244/408 (59%), Gaps = 24/408 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPEILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ NQ + K +P R L+LTPTRELA Q+ Y
Sbjct: 61 QHLIT------------NQPHGKSR--------RPV--RALILTPTRELAAQIGENVRDY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++ILVLDE
Sbjct: 99 SKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLIATPGRLLDLEHQNAVKLDQVEILVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI +++ P RQ +LFSAT + ++AE + +PL ++V
Sbjct: 158 ADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKSLAEKLLHNPLEIEVARRNTAS 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ +TQ + FVD K LL ++ Q +VFT TK A+ +A++LN G +A +H
Sbjct: 218 EQVTQHVHFVDK-KRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHRIGRT
Sbjct: 277 GNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
GRA G A+SLV E ++ IE+ K++IP G+EP I+
Sbjct: 337 GRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIATPGYEPDPSIKA 384
>gi|395227497|ref|ZP_10405823.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. A1]
gi|421844472|ref|ZP_16277630.1| ATP-dependent RNA helicase RhlE [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|424728799|ref|ZP_18157404.1| atp-dependent rna helicase [Citrobacter sp. L17]
gi|394718825|gb|EJF24446.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. A1]
gi|411774627|gb|EKS58117.1| ATP-dependent RNA helicase RhlE [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|422896670|gb|EKU36452.1| atp-dependent rna helicase [Citrobacter sp. L17]
Length = 448
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 169/408 (41%), Positives = 244/408 (59%), Gaps = 24/408 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPEILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ NQ + K +P R L+LTPTRELA Q+ Y
Sbjct: 61 QHLIT------------NQPHGKSR--------RPV--RALILTPTRELAAQIGENVRDY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++ILVLDE
Sbjct: 99 SKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLIATPGRLLDLEHQNAVKLDQVEILVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI +++ P RQ +LFSAT + ++AE + +PL ++V
Sbjct: 158 ADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKSLAEKLLHNPLEIEVARRNTAS 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ +TQ + FVD K LL ++ Q +VFT TK A+ +A++LN G +A +H
Sbjct: 218 EQVTQHVHFVDK-KRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHRIGRT
Sbjct: 277 GNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
GRA G A+SLV E ++ IE+ K++IP G+EP I+
Sbjct: 337 GRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIATPGYEPDPSIKA 384
>gi|194442237|ref|YP_002040055.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|418790452|ref|ZP_13346227.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|418791862|ref|ZP_13347613.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|418798926|ref|ZP_13354599.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|418808339|ref|ZP_13363894.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21550]
gi|418812496|ref|ZP_13368019.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|418815866|ref|ZP_13371361.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|418820078|ref|ZP_13375513.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
gi|418833247|ref|ZP_13388177.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|418835168|ref|ZP_13390064.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|418842083|ref|ZP_13396896.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|418843195|ref|ZP_13397994.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19443]
gi|418850126|ref|ZP_13404845.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|418853485|ref|ZP_13408174.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
gi|418859588|ref|ZP_13414190.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|418861916|ref|ZP_13416466.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|418869078|ref|ZP_13423519.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
gi|194400900|gb|ACF61122.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|392758015|gb|EJA14892.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|392765568|gb|EJA22354.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|392769395|gb|EJA26128.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|392775916|gb|EJA32606.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|392776527|gb|EJA33214.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21550]
gi|392791233|gb|EJA47723.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|392793094|gb|EJA49539.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
gi|392795819|gb|EJA52170.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|392803986|gb|EJA60163.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|392807408|gb|EJA63479.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|392817333|gb|EJA73248.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19443]
gi|392819332|gb|EJA75204.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|392826746|gb|EJA82467.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
gi|392829782|gb|EJA85443.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|392837155|gb|EJA92726.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|392837768|gb|EJA93338.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
Length = 453
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 243/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITHQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + ++PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLRNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL ++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTPGYEPDPSIKA 384
>gi|417340297|ref|ZP_12121649.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Baildon str. R6-199]
gi|417527880|ref|ZP_12184955.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Urbana str. R8-2977]
gi|353668359|gb|EHD05564.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Urbana str. R8-2977]
gi|357959299|gb|EHJ83588.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Baildon str. R6-199]
Length = 398
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 243/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITHQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + ++PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLRNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL ++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTPGYEPDPSIKA 384
>gi|213620634|ref|ZP_03373417.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 402
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 243/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITHQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + ++PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLRNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL ++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTPGYEPDPSIKA 384
>gi|417412622|ref|ZP_12158261.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Mississippi str. A4-633]
gi|353626248|gb|EHC74832.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Mississippi str. A4-633]
Length = 406
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 243/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITHQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + ++PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLRNPLEIEVAHR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL ++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTPGYEPDPSIKA 384
>gi|427710423|ref|YP_007052800.1| DEAD/DEAH box helicase [Nostoc sp. PCC 7107]
gi|427362928|gb|AFY45650.1| DEAD/DEAH box helicase domain protein [Nostoc sp. PCC 7107]
Length = 476
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 170/407 (41%), Positives = 242/407 (59%), Gaps = 21/407 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL +++A+ ++GYTKPT +Q QAIPA +SGRDL+ +QTG+GKTA+F LP L
Sbjct: 41 MSFSHLGLSNEIIRAVTELGYTKPTPIQMQAIPAVLSGRDLLAGAQTGTGKTASFTLPLL 100
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
K +S +K+L + + + R L+LTPTRELA QV Y
Sbjct: 101 QKLSS--------EKSLKSTSYECFPI-----------RALILTPTRELAAQVELNVREY 141
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+K + +++ GG+ Q +LL +IL+ATPGRL+DH+ +N S+++ LVLDE
Sbjct: 142 SKYLK-LNTMAMFGGVSINPQKKLLRGRVDILVATPGRLLDHVQQRTVNLSNVEFLVLDE 200
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI +I+ P RQ +LF AT + +A + +P +++V
Sbjct: 201 ADRMLDMGFIRDIRRILSLLPKQRQNLLFFATFSDKIKELATGLLDNPEMIEVARRNVTA 260
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+TQ + VD K +LL L+R Q +VFT TK AD + +L A +H
Sbjct: 261 DTVTQKVYKVDRD-RKCQLLVQLIRQNNWYQVLVFTRTKYGADRLVKQLTQERIQALAIH 319
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q+AR L + +++LVATD+AARG+D+ + HV N+DLP PEDYVHRIGRT
Sbjct: 320 GNKSQSARTHALAKFKNDSLQVLVATDIAARGLDISELPHVVNFDLPNVPEDYVHRIGRT 379
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIR 407
GRAG +G AVSLV E + IE KQ++P EV+ GF +I+
Sbjct: 380 GRAGASGKAVSLVCADEYDLLADIETLIKQRLPFEVVTGFGANSQIK 426
>gi|365105460|ref|ZP_09334707.1| ATP-dependent RNA helicase rhlE [Citrobacter freundii 4_7_47CFAA]
gi|363643475|gb|EHL82793.1| ATP-dependent RNA helicase rhlE [Citrobacter freundii 4_7_47CFAA]
Length = 448
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 169/408 (41%), Positives = 244/408 (59%), Gaps = 24/408 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPEILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ NQ + K +P R L+LTPTRELA Q+ Y
Sbjct: 61 QHLIT------------NQPHGKSR--------RPV--RALILTPTRELAAQIGENVRDY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++ILVLDE
Sbjct: 99 SKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLIATPGRLLDLEHQNAVKLDQVEILVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI +++ P RQ +LFSAT + ++AE + +PL ++V
Sbjct: 158 ADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKSLAEKLLHNPLEIEVARRNTAS 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ +TQ + FVD K LL ++ Q +VFT TK A+ +A++LN G +A +H
Sbjct: 218 EQVTQHVHFVDK-KRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHRIGRT
Sbjct: 277 GNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
GRA G A+SLV E ++ IE+ K++IP G+EP I+
Sbjct: 337 GRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIATPGYEPDPSIKA 384
>gi|378955820|ref|YP_005213307.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Gallinarum/pullorum str.
RKS5078]
gi|438146852|ref|ZP_20876018.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
gi|357206431|gb|AET54477.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Gallinarum/pullorum str.
RKS5078]
gi|434938585|gb|ELL45535.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
Length = 453
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 243/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITHQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + ++PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLRNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL ++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTPGYEPDPSIKA 384
>gi|421853143|ref|ZP_16285822.1| DNA/RNA helicase [Acetobacter pasteurianus subsp. pasteurianus LMG
1262 = NBRC 106471]
gi|371478603|dbj|GAB31025.1| DNA/RNA helicase [Acetobacter pasteurianus subsp. pasteurianus LMG
1262 = NBRC 106471]
Length = 636
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 174/399 (43%), Positives = 234/399 (58%), Gaps = 27/399 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L E +L+A+ +GYT PT +QEQAIPA + RD++ +QTG+GKTA+F LP L
Sbjct: 155 VTFADLELSEPILRAISDMGYTHPTPIQEQAIPAILMARDVMGVAQTGTGKTASFTLPML 214
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ S+ R R PR L+L PTRELALQV Y
Sbjct: 215 EILSDSRA---------------------RARM----PRSLILEPTRELALQVAENFVNY 249
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+K A+ ++GG Q ++L+R ++L+ATPGRL+D G + +H ILV+DE
Sbjct: 250 GKYLKLNHAL-LIGGESMADQKEVLNRGVDVLIATPGRLLDLFERGGLMLNHTGILVIDE 308
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DIEKIV P RQT+LFSAT+ + +A+ P + V
Sbjct: 309 ADRMLDMGFIPDIEKIVGLLPPNRQTLLFSATMAPTIRKLADAFLHSPKEITVARQSSVA 368
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
IT I+ VD+ K L LL+D + A+VF KRD DI+ L GF AA LH
Sbjct: 369 TTITTGIVVVDE-YSKRETLRQLLKDPALQNAIVFCNRKRDVDILTKSLVKHGFSAAALH 427
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GDL Q+ R TLE + +K+LV +DVAARGID+ ++HVFN+DLP EDYVHRIGRT
Sbjct: 428 GDLPQSVRFSTLEKFKNDELKVLVCSDVAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRT 487
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVING 399
GRAGR G A S+ ++ + IE+ T ++IP ++G
Sbjct: 488 GRAGREGHAYSIATPYDKALAEAIEKLTGKEIPRMALDG 526
>gi|224582633|ref|YP_002636431.1| ATP-dependent RNA helicase rhlE [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|224467160|gb|ACN44990.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
Length = 488
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 243/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITHQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + ++PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLRNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL ++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTPGYEPDPSIKA 384
>gi|85716308|ref|ZP_01047281.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A]
gi|85696824|gb|EAQ34709.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A]
Length = 482
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 164/403 (40%), Positives = 245/403 (60%), Gaps = 28/403 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL + VL A+ GYT PT +Q+QAIP ++ RD++ +QTG+GKTAAF+LP L
Sbjct: 1 MSFSHLGLSDKVLAAVAAAGYTSPTPIQDQAIPHVLARRDVLGIAQTGTGKTAAFVLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
T E+ R + PR L+L PTRELA QV ++Y
Sbjct: 61 -------------------------TLLEKGRARARMPRTLILEPTRELAAQVKEQFDKY 95
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G +K+ ++GG+ + Q L+R ++L+ATPGRL+DH G + + +++LV+DE
Sbjct: 96 G-AGQKLNVALLIGGVSFGDQDLKLTRGVDVLIATPGRLLDHTERGGLLLTGVELLVIDE 154
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DIE+I P TRQT+ F+AT+ + + + +P ++V+
Sbjct: 155 ADRMLDMGFIPDIERICKLVPFTRQTLFFTATMPNEIRRVTDAFLHNPQRIEVSRPATTA 214
Query: 241 KNITQSILFVDDILHKNR-LLDYLLRD-KRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+TQS + H+ R LL +LLR+ K + A++F KRD I+ L GF
Sbjct: 215 ATVTQSQVSCSREPHEKRELLRHLLREAKELKNAIIFCNRKRDVAIVYKSLQKHGFSVGA 274
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
LHGD+ Q+AR +L+ R+G + +LVA+DVAARG+D+P ++HV N+D+P P+DYVHRIG
Sbjct: 275 LHGDMDQSARTASLDQFRKGELPLLVASDVAARGLDIPEVSHVLNFDVPHHPDDYVHRIG 334
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
RTGRAGR G A+++V A+ ++ IE+ T Q IP ++G++
Sbjct: 335 RTGRAGRTGTAITIVCPADFKSLAAIEKLTGQPIPKAELSGYD 377
>gi|422835705|ref|ZP_16883758.1| ATP-dependent RNA helicase rhlE [Escherichia coli E101]
gi|371611884|gb|EHO00403.1| ATP-dependent RNA helicase rhlE [Escherichia coli E101]
Length = 454
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVMEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKVLAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|417509372|ref|ZP_12174654.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Senftenberg str. A4-543]
gi|353649195|gb|EHC91885.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Senftenberg str. A4-543]
Length = 444
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 243/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITHQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + ++PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLRNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL ++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTPGYEPDPSIKA 384
>gi|172040364|ref|YP_001800078.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109]
gi|448823346|ref|YP_007416511.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7111]
gi|171851668|emb|CAQ04644.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109]
gi|448276843|gb|AGE36267.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7111]
Length = 778
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 168/393 (42%), Positives = 232/393 (59%), Gaps = 35/393 (8%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F +GL V A+ VG+TKP+ +QEQ IP ++G D++ +QTG+GKTAAF LP L
Sbjct: 133 FGDLGLSPEVFDAVRAVGFTKPSPIQEQTIPLLMAGEDVVGLAQTGTGKTAAFALPILS- 191
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
RL K +P+ LVL PTRELALQV + E +
Sbjct: 192 ---------------------------RLNLKSRKPQALVLAPTRELALQVAESFEDFAE 224
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
M + + I GG PY Q+ L R +++ TPGR+IDH+ G ++ S L+ +VLDEAD
Sbjct: 225 KMGGVNILPIYGGQPYGAQLSGLRRGAHVVVGTPGRVIDHLQKGSLDISELRFMVLDEAD 284
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
ML+MGF D+E+I++ TP +Q LFSAT+ + ++++ P + V S ++ +N
Sbjct: 285 EMLNMGFQEDVERILEDTPEDKQVALFSATMPSAIRHLSKRYLNSPQEVTVKSTQRTAEN 344
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQ---AVVFTATKRDADIIADRLNISGFLAAPL 299
I Q L I+H LD L R V ++F TK D + +A+RL G+ AA +
Sbjct: 345 IEQDYL----IVHHREKLDALTRILEVTDFDAMIMFVRTKNDTEELAERLRARGYEAAAI 400
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
+GD+ Q R RT++ L+ GR+ ILVATDVAARG+DV ITHVFNYD+P+ E YVHRIGR
Sbjct: 401 NGDIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERITHVFNYDIPRDTESYVHRIGR 460
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQI 392
TGRAGR+G AV V ER +K IER TK ++
Sbjct: 461 TGRAGRSGRAVLFVTPRERRMLKSIERATKSRL 493
>gi|15600973|ref|NP_232603.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121586756|ref|ZP_01676539.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
gi|121727729|ref|ZP_01680817.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V52]
gi|147672261|ref|YP_001215860.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
gi|153816784|ref|ZP_01969451.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457]
gi|227119425|ref|YP_002821320.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
gi|227811827|ref|YP_002811837.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae M66-2]
gi|229506632|ref|ZP_04396141.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae BX 330286]
gi|229510570|ref|ZP_04400050.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae B33]
gi|229517298|ref|ZP_04406743.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC9]
gi|229605109|ref|YP_002875813.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MJ-1236]
gi|254850597|ref|ZP_05239947.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MO10]
gi|255745988|ref|ZP_05419935.1| ATP-dependent RNA helicase RhlE [Vibrio cholera CIRS 101]
gi|262162174|ref|ZP_06031189.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae INDRE 91/1]
gi|262167359|ref|ZP_06035068.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC27]
gi|298500057|ref|ZP_07009863.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MAK 757]
gi|360038207|ref|YP_004939969.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 str.
2010EL-1786]
gi|379743642|ref|YP_005334694.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae IEC224]
gi|417812245|ref|ZP_12458906.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-49A2]
gi|417816459|ref|ZP_12463089.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HCUF01]
gi|418330102|ref|ZP_12941135.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-06A1]
gi|418337359|ref|ZP_12946254.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-23A1]
gi|418339628|ref|ZP_12948515.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-28A1]
gi|418349026|ref|ZP_12953758.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-43A1]
gi|418353791|ref|ZP_12956516.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-61A1]
gi|419824233|ref|ZP_14347762.1| type III restriction enzyme, res subunit [Vibrio cholerae
CP1033(6)]
gi|421317231|ref|ZP_15767801.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1032(5)]
gi|421319698|ref|ZP_15770256.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1038(11)]
gi|421323740|ref|ZP_15774267.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1041(14)]
gi|421326713|ref|ZP_15777231.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1042(15)]
gi|421331028|ref|ZP_15781509.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1046(19)]
gi|421335430|ref|ZP_15785893.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1048(21)]
gi|421340967|ref|ZP_15791397.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-20A2]
gi|421346365|ref|ZP_15796749.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-46A1]
gi|422885377|ref|ZP_16931810.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-40A1]
gi|422898086|ref|ZP_16935500.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-48A1]
gi|422904241|ref|ZP_16939190.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-70A1]
gi|422914759|ref|ZP_16949258.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HFU-02]
gi|422927136|ref|ZP_16960140.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-38A1]
gi|423146476|ref|ZP_17134043.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-19A1]
gi|423147165|ref|ZP_17134639.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-21A1]
gi|423150988|ref|ZP_17138270.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-22A1]
gi|423157880|ref|ZP_17144960.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-32A1]
gi|423161452|ref|ZP_17148367.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-33A2]
gi|423162647|ref|ZP_17149508.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-48B2]
gi|423732471|ref|ZP_17705767.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-17A1]
gi|423737120|ref|ZP_17710220.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-50A2]
gi|423901328|ref|ZP_17728088.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-62A1]
gi|423912583|ref|ZP_17728805.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-77A1]
gi|424000098|ref|ZP_17743254.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-17A2]
gi|424003759|ref|ZP_17746813.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-37A1]
gi|424021889|ref|ZP_17761597.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-62B1]
gi|424028540|ref|ZP_17768136.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-69A1]
gi|424587832|ref|ZP_18027403.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1030(3)]
gi|424592642|ref|ZP_18032056.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1040(13)]
gi|424596501|ref|ZP_18035807.1| DEAD/DEAH box helicase family protein [Vibrio Cholerae CP1044(17)]
gi|424603353|ref|ZP_18042486.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1047(20)]
gi|424604146|ref|ZP_18043188.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1050(23)]
gi|424608095|ref|ZP_18047028.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-39A1]
gi|424614737|ref|ZP_18053516.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-41A1]
gi|424618598|ref|ZP_18057256.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-42A1]
gi|424619529|ref|ZP_18058131.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-47A1]
gi|424642409|ref|ZP_18080245.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-56A2]
gi|424650247|ref|ZP_18087849.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-57A2]
gi|424654038|ref|ZP_18091411.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-81A2]
gi|440711063|ref|ZP_20891706.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 4260B]
gi|443505275|ref|ZP_21072213.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-64A1]
gi|443509172|ref|ZP_21075920.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-65A1]
gi|443513014|ref|ZP_21079636.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-67A1]
gi|443516560|ref|ZP_21083059.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-68A1]
gi|443520221|ref|ZP_21086602.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-71A1]
gi|443521423|ref|ZP_21087743.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-72A2]
gi|443530196|ref|ZP_21096213.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-7A1]
gi|443532844|ref|ZP_21098845.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-80A1]
gi|443537560|ref|ZP_21103418.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-81A1]
gi|449058163|ref|ZP_21736459.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 str. Inaba
G4222]
gi|9657596|gb|AAF96116.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121549053|gb|EAX59090.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
gi|121629946|gb|EAX62356.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V52]
gi|126512587|gb|EAZ75181.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457]
gi|146314644|gb|ABQ19184.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
gi|227010969|gb|ACP07180.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae M66-2]
gi|227014875|gb|ACP11084.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
gi|229345334|gb|EEO10307.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC9]
gi|229353015|gb|EEO17955.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae B33]
gi|229356983|gb|EEO21901.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae BX 330286]
gi|229371595|gb|ACQ62017.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MJ-1236]
gi|254846302|gb|EET24716.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MO10]
gi|255735742|gb|EET91140.1| ATP-dependent RNA helicase RhlE [Vibrio cholera CIRS 101]
gi|262024243|gb|EEY42935.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC27]
gi|262028249|gb|EEY46907.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae INDRE 91/1]
gi|297542038|gb|EFH78089.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MAK 757]
gi|340039609|gb|EGR00582.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HCUF01]
gi|340045065|gb|EGR06013.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-49A2]
gi|341629945|gb|EGS55064.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-70A1]
gi|341630724|gb|EGS55691.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-40A1]
gi|341630786|gb|EGS55745.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-48A1]
gi|341635257|gb|EGS59977.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HFU-02]
gi|341644933|gb|EGS69094.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-38A1]
gi|356420825|gb|EHH74334.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-19A1]
gi|356426337|gb|EHH79649.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-06A1]
gi|356427189|gb|EHH80441.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-21A1]
gi|356430743|gb|EHH83948.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-23A1]
gi|356438239|gb|EHH91281.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-32A1]
gi|356440106|gb|EHH93065.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-22A1]
gi|356442615|gb|EHH95452.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-28A1]
gi|356442789|gb|EHH95623.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-33A2]
gi|356445888|gb|EHH98688.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-43A1]
gi|356454856|gb|EHI07503.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-61A1]
gi|356457662|gb|EHI10174.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-48B2]
gi|356649361|gb|AET29415.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 str.
2010EL-1786]
gi|378796236|gb|AFC59706.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae IEC224]
gi|395919689|gb|EJH30512.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1032(5)]
gi|395921754|gb|EJH32573.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1041(14)]
gi|395924586|gb|EJH35388.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1038(11)]
gi|395933228|gb|EJH43969.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1046(19)]
gi|395933638|gb|EJH44377.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1042(15)]
gi|395935112|gb|EJH45847.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1048(21)]
gi|395938451|gb|EJH49143.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-20A2]
gi|395947892|gb|EJH58547.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-46A1]
gi|395959847|gb|EJH70256.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-42A1]
gi|395968920|gb|EJH78832.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-57A2]
gi|395968970|gb|EJH78880.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-56A2]
gi|395971068|gb|EJH80767.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1030(3)]
gi|395972411|gb|EJH82004.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1047(20)]
gi|395980357|gb|EJH89615.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-47A1]
gi|408009037|gb|EKG46974.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-41A1]
gi|408015303|gb|EKG52892.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-39A1]
gi|408042567|gb|EKG78613.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1040(13)]
gi|408049317|gb|EKG84544.1| DEAD/DEAH box helicase family protein [Vibrio Cholerae CP1044(17)]
gi|408050496|gb|EKG85657.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1050(23)]
gi|408060801|gb|EKG95411.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-81A2]
gi|408613896|gb|EKK87182.1| type III restriction enzyme, res subunit [Vibrio cholerae
CP1033(6)]
gi|408619725|gb|EKK92739.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-17A1]
gi|408650865|gb|EKL22139.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-50A2]
gi|408652886|gb|EKL24076.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-62A1]
gi|408663825|gb|EKL34671.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-77A1]
gi|408854392|gb|EKL94149.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-37A1]
gi|408854467|gb|EKL94222.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-17A2]
gi|408877724|gb|EKM16757.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-69A1]
gi|408880066|gb|EKM18998.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-62B1]
gi|439973407|gb|ELP49638.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 4260B]
gi|443430315|gb|ELS72887.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-64A1]
gi|443434156|gb|ELS80315.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-65A1]
gi|443437983|gb|ELS87714.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-67A1]
gi|443442093|gb|ELS95407.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-68A1]
gi|443446084|gb|ELT02755.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-71A1]
gi|443452521|gb|ELT12705.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-72A2]
gi|443459766|gb|ELT27160.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-7A1]
gi|443463936|gb|ELT34886.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-80A1]
gi|443467569|gb|ELT42225.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-81A1]
gi|448263625|gb|EMB00866.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 str. Inaba
G4222]
Length = 451
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 170/406 (41%), Positives = 241/406 (59%), Gaps = 26/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S+GL +LKA+ + GY P+ +Q QAIPA ++G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
A K P ++ N Q R L+LTPTRELA Q+ Y
Sbjct: 61 ELLA----KGPKVRAN--------------------QVRALILTPTRELAAQIQDNVMLY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +K+ + GG+ QMQ + + +IL+ATPGRL+D N + F L+ILVLDE
Sbjct: 97 GRHLP-LKSAVVFGGVKINPQMQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ +LFSAT + +A+ + +P+ + V+
Sbjct: 156 ADRMLDMGFIRDIHKILKLLPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I + D+ K +L L+++ Q +VF TK A+ +A LN G AA +H
Sbjct: 216 RTVEQCI-YPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G ++ILVATD+AARGID+P + V N++LPK EDYVHRIGRT
Sbjct: 275 GNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
GRAG G A+SLV+ E + IER T+ +P + GFEP ++
Sbjct: 335 GRAGEVGKAISLVSAIEAPELFAIERLTQALLPRVNLAGFEPTNQL 380
>gi|421782261|ref|ZP_16218719.1| ATP-dependent RNA helicase [Serratia plymuthica A30]
gi|407755624|gb|EKF65749.1| ATP-dependent RNA helicase [Serratia plymuthica A30]
Length = 454
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 169/408 (41%), Positives = 247/408 (60%), Gaps = 24/408 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+++GL +L+A+ + GY +PT +Q QAIP + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFETLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
SK+ P+ + +P R L+LTPTRELA Q+ E Y
Sbjct: 61 QLL--SKHDHPIKGR------------------RPV--RALILTPTRELAAQIGENVEAY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
+++ ++++ + GG+ QM L +IL+ATPGRL+D + ++ S ++ILVLDE
Sbjct: 99 SKHLR-LRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI +++ P RQ +LFSAT + +A + +P ++V
Sbjct: 158 ADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALANKLLHNPASVEVARRNTAS 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I QS+ FVD K LL ++ + Q +VF TK A+ +A++LN G AA +H
Sbjct: 218 EQIEQSVHFVDK-KRKRELLSQMIGEGDWKQVLVFNRTKHGANHLAEQLNKDGITAAAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G+I++LVATD+AARG+D+ + HV NY+LP PEDYVHRIGRT
Sbjct: 277 GNKSQGARTRALADFKDGKIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
GRA R G A+SLV E ++ IER K++IP + G+EP I+
Sbjct: 337 GRAERTGEAISLVCVDEHKLLRDIERLLKREIPRIALPGYEPDPSIKA 384
>gi|229828479|ref|ZP_04454548.1| hypothetical protein GCWU000342_00541 [Shuttleworthia satelles DSM
14600]
gi|229793073|gb|EEP29187.1| hypothetical protein GCWU000342_00541 [Shuttleworthia satelles DSM
14600]
Length = 538
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 159/393 (40%), Positives = 237/393 (60%), Gaps = 29/393 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F GL + +L A+ K GY +PT VQE++IP + GRD+I +QTG+GKTAAF LP L
Sbjct: 62 LKFSEFGLKKDLLSAIRKAGYEEPTPVQEESIPVILEGRDMIGCAQTGTGKTAAFALPVL 121
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
HK K + R LVLTPTRELA+Q+ ++Y
Sbjct: 122 HKLTL---------------------------LKRPRVRALVLTPTRELAIQIFDNFKKY 154
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ ++ + + GG Q+ L R +IL+ATPGRL+D M ++ S ++ILVLDE
Sbjct: 155 GRYLH-LRTVCLYGGAKRGPQIGALRRGADILVATPGRLLDFMGQDLVDLSSVEILVLDE 213
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF+ D+ +IV++TP RQT++FSAT++ V +A+ + KDP+ ++V +
Sbjct: 214 ADRMLDMGFLPDVSRIVESTPSKRQTLMFSATMEKEVRQLADRMLKDPVQVQVTPENEAA 273
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ Q ++F K ++ LL D+ V A+VFT TK AD ++ L G + +H
Sbjct: 274 DTVEQKLIF-SSREDKREIIASLLTDEAVESAIVFTRTKHGADKLSRELKRRGIESVAIH 332
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD Q R L + G+++++VATDVAARG+D+P ++HVFNYD+P+ Y+HRIGRT
Sbjct: 333 GDKTQGQRQDALNRFKSGKVRVMVATDVAARGLDIPKLSHVFNYDVPEEAGAYIHRIGRT 392
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIP 393
GRAG +G A++L AE ++++E ++ IP
Sbjct: 393 GRAGESGIAITLCCEAELDALREVEELLEKPIP 425
>gi|432552747|ref|ZP_19789477.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE47]
gi|431086319|gb|ELD92342.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE47]
Length = 453
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A+++N G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQINKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|414343167|ref|YP_006984688.1| ATP-dependent RNA helicase [Gluconobacter oxydans H24]
gi|411028502|gb|AFW01757.1| ATP-dependent RNA helicase [Gluconobacter oxydans H24]
Length = 435
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 168/393 (42%), Positives = 236/393 (60%), Gaps = 25/393 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F + L E + KAL + GYT PT +Q AIP + GRDL+ +QTG+GKTAAF LP L
Sbjct: 3 SFAELNLAEPIQKALAEEGYTTPTPIQAGAIPYLLEGRDLLGLAQTGTGKTAAFALPILD 62
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
Y + R P R+LVL PTRELA Q+ + Y
Sbjct: 63 -----------------------YLLRNRRPPAPKTVRVLVLAPTRELASQIDESFGAYA 99
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+MK A+ + GG+ RQ++ R ++L+A PGRL+D + G I+ S L++LVLDEA
Sbjct: 100 RHMKLSHAV-VFGGVGQGRQIEATRRGVDVLVAAPGRLLDLVGQGYIDLSALEVLVLDEA 158
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGF+ DI +I+ P RQT+LFSAT+ + ++A ++ +P ++V
Sbjct: 159 DRMLDMGFVRDIRRIMALLPARRQTVLFSATMPQSISDLAHSLLSNPATVQVTPESSTVD 218
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
I Q+++FV+ K+ L L+ V +AVVFT K +A+ +A+ LN +G A +HG
Sbjct: 219 RIRQAVMFVESEKKKDATL-MLVESSNVVRAVVFTLMKHEANKVAEFLNKNGITAEAIHG 277
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ Q AR R + R G +K+LVATD+AARGIDV ++HVFNYDLP PE YVHRIGRT
Sbjct: 278 NKSQGARERAMSGFRTGTVKVLVATDIAARGIDVDDVSHVFNYDLPNVPESYVHRIGRTA 337
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
RAGR+G+AVSL + +R +K IE+ + IP+
Sbjct: 338 RAGRDGWAVSLCDAEQRAWLKDIEKKIDKAIPV 370
>gi|419865132|ref|ZP_14387522.1| ATP-dependent RNA helicase RhlE [Escherichia coli O103:H25 str.
CVM9340]
gi|388338203|gb|EIL04676.1| ATP-dependent RNA helicase RhlE [Escherichia coli O103:H25 str.
CVM9340]
Length = 454
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 241/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I ++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-ICSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|312113545|ref|YP_004011141.1| DEAD/DEAH box helicase [Rhodomicrobium vannielii ATCC 17100]
gi|311218674|gb|ADP70042.1| DEAD/DEAH box helicase domain protein [Rhodomicrobium vannielii
ATCC 17100]
Length = 494
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 175/405 (43%), Positives = 239/405 (59%), Gaps = 32/405 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M FK + L + VL A+ GYT PT +Q QAIP A+ GRD++ +QTG+GKTA+F+LP L
Sbjct: 1 MTFKDLKLSDKVLAAIDAAGYTTPTPIQAQAIPFALEGRDVVGIAQTGTGKTASFVLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ E+ R + PR L+L PTRELA QV A E
Sbjct: 61 NML-------------------------EQGRARARMPRSLILEPTRELAAQVAEAFETL 95
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G K A+ ++GG+ + Q + L R +IL+ATPGRL+DH GK+ + + LV+DE
Sbjct: 96 GSQHKLTVAL-LIGGVSFDDQEKKLERGADILIATPGRLLDHFGRGKLLMNAVDYLVIDE 154
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DIE+I P +RQT+ FSAT+ + + + K+P ++V++
Sbjct: 155 ADRMLDMGFIPDIERICKLLPPSRQTLFFSATMPPEIQKLTDQFLKNPEQVRVSAPATAA 214
Query: 241 KNITQSILFVD-DILHKNRLLDYLLRDK--RVGQAVVFTATKRDADIIADRLNISGFLAA 297
KNITQ + F D K +L L+R + + A++F KRD ++ L GF A
Sbjct: 215 KNITQKLKFSPADSKTKRHVLRELMRSEVSTIQNAIIFCNRKRDVAVLHKSLVKHGFNAG 274
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
LHGDL Q R TLE R+G I L A+DVAARG+D+P ++HVFN+D+P PEDYVHRI
Sbjct: 275 ALHGDLDQRQRTATLEAFRKGEITYLAASDVAARGLDIPEVSHVFNFDVPISPEDYVHRI 334
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRTGRAGR+G+A +V E ++ IE K + IE I+G EP
Sbjct: 335 GRTGRAGRDGYAAMIVTPKEMKGVRAIENLCKAK--IEWIDG-EP 376
>gi|168236748|ref|ZP_02661806.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|194735725|ref|YP_002113911.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|194711227|gb|ACF90448.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|197290147|gb|EDY29504.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
Length = 453
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 243/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITHQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + ++PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLRNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL ++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTPGYEPDPSIKA 384
>gi|421849597|ref|ZP_16282575.1| DNA/RNA helicase [Acetobacter pasteurianus NBRC 101655]
gi|371459658|dbj|GAB27778.1| DNA/RNA helicase [Acetobacter pasteurianus NBRC 101655]
Length = 636
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 174/399 (43%), Positives = 234/399 (58%), Gaps = 27/399 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L E +L+A+ +GYT PT +QEQAIPA + RD++ +QTG+GKTA+F LP L
Sbjct: 155 VTFADLELSEPILRAISDMGYTHPTPIQEQAIPAILMARDVMGVAQTGTGKTASFTLPML 214
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ S+ R R PR L+L PTRELALQV Y
Sbjct: 215 EILSDSRA---------------------RARM----PRSLILEPTRELALQVAENFVNY 249
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+K A+ ++GG Q ++L+R ++L+ATPGRL+D G + +H ILV+DE
Sbjct: 250 GKYLKLNHAL-LIGGESMADQKEVLNRGVDVLIATPGRLLDLFERGGLMLNHTGILVIDE 308
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DIEKIV P RQT+LFSAT+ + +A+ P + V
Sbjct: 309 ADRMLDMGFIPDIEKIVGLLPPNRQTLLFSATMAPTIRKLADAFLHSPKEITVARQSSVA 368
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
IT I+ VD+ K L LL+D + A+VF KRD DI+ L GF AA LH
Sbjct: 369 TTITTGIVVVDE-YSKRETLRQLLKDPALQNAIVFCNRKRDVDILTKSLVKHGFSAAALH 427
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GDL Q+ R TLE + +K+LV +DVAARGID+ ++HVFN+DLP EDYVHRIGRT
Sbjct: 428 GDLPQSVRFSTLEKFKNDELKVLVCSDVAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRT 487
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVING 399
GRAGR G A S+ ++ + IE+ T ++IP ++G
Sbjct: 488 GRAGREGHAYSIATPYDKALAEAIEKLTGKEIPRMALDG 526
>gi|354596964|ref|ZP_09014981.1| DEAD/DEAH box helicase domain protein [Brenneria sp. EniD312]
gi|353674899|gb|EHD20932.1| DEAD/DEAH box helicase domain protein [Brenneria sp. EniD312]
Length = 455
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 172/412 (41%), Positives = 245/412 (59%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT VQ QAIP ++GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSADILRAVEEQGYREPTPVQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+S +K + PV R L+LTPTRELA Q+
Sbjct: 61 QLLSSGAPPAKGRRPV--------------------------RALILTPTRELAAQIDEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
+ Y Y++ ++++ + GG+ QM L +IL+ATPGRL+D + ++ S ++IL
Sbjct: 95 VQAYSKYLR-LRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVDLSQIEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ PV RQ +LFSAT + +A + +P ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPVKRQNLLFSATFSDEIRTLANKLLTNPASVEVVRR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL L+ + Q +VFT TK A+ +A+ L G A
Sbjct: 214 NAPSELVTQHVHFVDK-RRKRELLSQLIGENNWQQVLVFTRTKHGANHLAELLEKDGITA 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L N + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALANFKDGGIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IER K++IP ++G+EP I+
Sbjct: 333 IGRTGRAESTGEALSLVCVDEHKLLRDIERLLKREIPRIAVSGYEPDPSIKA 384
>gi|160942681|ref|ZP_02089924.1| hypothetical protein FAEPRAM212_00153 [Faecalibacterium prausnitzii
M21/2]
gi|158446036|gb|EDP23039.1| DEAD/DEAH box helicase [Faecalibacterium prausnitzii M21/2]
Length = 641
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 164/396 (41%), Positives = 240/396 (60%), Gaps = 28/396 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M FK + L +L+A+ + GY P+ +Q AIP ++GRDL+ +QTG+GKTAAF LP L
Sbjct: 1 MTFKELNLSAPLLRAVQEAGYETPSPIQAAAIPPVLAGRDLMGCAQTGTGKTAAFALPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + N + + R L+LTPTRELALQ+ + E Y
Sbjct: 61 DRLTA----------NAPRRKGAV--------------RALILTPTRELALQIGESFEAY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+K +++ I GG+ Q++ L + +IL+A PGRL D + G I+ S L+I VLDE
Sbjct: 97 GKYLK-LRSTVIFGGVGQAPQVEALKKGVDILIACPGRLNDLIGQGFIDLSALEIFVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF++D++K++ P RQ ++FSAT+ + +A I DP +KV+ +
Sbjct: 156 ADRMLDMGFVHDVKKVIAKLPAQRQNLMFSATMPAEIEQLAAGILHDPAFVKVDPVSSTV 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRD--KRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
I QS+ +V+ +K LL +L+++ V A+VF+ TK AD IA L G AA
Sbjct: 216 DRIQQSLYYVEK-GNKKLLLPWLIKNLQPPVVNALVFSRTKHGADKIAKDLTKQGIPAAA 274
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ Q AR LE+ + G+ ++LVATD+AARGID+ ++HVFNYDLP+ PE YVHRIG
Sbjct: 275 IHGNKSQTARVTALEDFKSGKTRVLVATDIAARGIDISELSHVFNYDLPEVPETYVHRIG 334
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
RT RAG +G AVS E+ + IE+ +++IP+
Sbjct: 335 RTARAGADGTAVSFCAPEEQEYLAGIEKLNRRKIPV 370
>gi|258542730|ref|YP_003188163.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01]
gi|384042651|ref|YP_005481395.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-12]
gi|384051168|ref|YP_005478231.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-03]
gi|384054276|ref|YP_005487370.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-07]
gi|384057510|ref|YP_005490177.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-22]
gi|384060151|ref|YP_005499279.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-26]
gi|384063443|ref|YP_005484085.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-32]
gi|384119453|ref|YP_005502077.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256633808|dbj|BAH99783.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01]
gi|256636867|dbj|BAI02836.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-03]
gi|256639920|dbj|BAI05882.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-07]
gi|256642976|dbj|BAI08931.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-22]
gi|256646031|dbj|BAI11979.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-26]
gi|256649084|dbj|BAI15025.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-32]
gi|256652071|dbj|BAI18005.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256655128|dbj|BAI21055.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-12]
Length = 636
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 174/399 (43%), Positives = 234/399 (58%), Gaps = 27/399 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F + L E +L+A+ +GYT PT +QEQAIPA + RD++ +QTG+GKTA+F LP L
Sbjct: 155 VTFADLELSEPILRAISDMGYTHPTPIQEQAIPAILMARDVMGVAQTGTGKTASFTLPML 214
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ S+ R R PR L+L PTRELALQV Y
Sbjct: 215 EILSDSRA---------------------RARM----PRSLILEPTRELALQVAENFVNY 249
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+K A+ ++GG Q ++L+R ++L+ATPGRL+D G + +H ILV+DE
Sbjct: 250 GKYLKLNHAL-LIGGESMADQKEVLNRGVDVLIATPGRLLDLFERGGLMLNHTGILVIDE 308
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DIEKIV P RQT+LFSAT+ + +A+ P + V
Sbjct: 309 ADRMLDMGFIPDIEKIVGLLPPNRQTLLFSATMAPTIRKLADAFLHSPKEITVARQSSVA 368
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
IT I+ VD+ K L LL+D + A+VF KRD DI+ L GF AA LH
Sbjct: 369 TTITTGIVVVDE-YSKRETLRQLLKDPALQNAIVFCNRKRDVDILTKSLVKHGFSAAALH 427
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GDL Q+ R TLE + +K+LV +DVAARGID+ ++HVFN+DLP EDYVHRIGRT
Sbjct: 428 GDLPQSVRFSTLEKFKNDELKVLVCSDVAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRT 487
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVING 399
GRAGR G A S+ ++ + IE+ T ++IP ++G
Sbjct: 488 GRAGREGHAYSIATPYDKALAEAIEKLTGKEIPRMALDG 526
>gi|383316474|ref|YP_005377316.1| DNA/RNA helicase [Frateuria aurantia DSM 6220]
gi|379043578|gb|AFC85634.1| DNA/RNA helicase, superfamily II [Frateuria aurantia DSM 6220]
Length = 603
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 164/394 (41%), Positives = 232/394 (58%), Gaps = 31/394 (7%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
F ++ L +L+AL +VGY P+ +Q IP + GRD++ +QTG+GKTAAF LP L
Sbjct: 14 GFSALPLRPEILQALREVGYESPSPIQSATIPPLLEGRDVLGQAQTGTGKTAAFALPVLS 73
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ NK P+ LVL PTRELA+QV A +RY
Sbjct: 74 RIERDSNK----------------------------PQALVLAPTRELAIQVAEAFQRYA 105
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+M + I GG Y Q+Q L R ++++ TPGR+IDH+ G ++ S L+ LVLDEA
Sbjct: 106 AHMPGFHILPIYGGQSYGPQLQALRRGVQVIVGTPGRVIDHLTRGSLDLSELKFLVLDEA 165
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
D ML MGFI+D+EK+++ATP TRQ LFSAT+ + +A+ K P+ + + +
Sbjct: 166 DEMLRMGFIDDVEKVLEATPPTRQVALFSATMPSQIRKIAQQHLKTPVEVTIKAATSTNT 225
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
NI Q +V LHK + +L + +VF TK+ + +++RL GF AA ++G
Sbjct: 226 NIRQRYWWVSG-LHKLDAMTRILEAESFDAMIVFARTKQATEELSERLQARGFAAAAING 284
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
D+ Q R R ++ L+ G++ ILVATDVAARG+DV I+HV NYD+P E YVHRIGRTG
Sbjct: 285 DIAQPQRERVIQQLKDGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTG 344
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIE 395
RAGR+G A+ V E+ ++ IER T+Q PIE
Sbjct: 345 RAGRSGEAILFVTPREKGMLRAIERATRQ--PIE 376
>gi|205352078|ref|YP_002225879.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|375122870|ref|ZP_09768034.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
gi|445130786|ref|ZP_21381494.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
gi|205271859|emb|CAR36694.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|326627120|gb|EGE33463.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
gi|444851544|gb|ELX76633.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
Length = 453
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 243/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITHQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + ++PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLRNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL ++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHNLLRDIEKLLKKEIPRITTPGYEPDPSIKA 384
>gi|157369574|ref|YP_001477563.1| ATP-dependent RNA helicase RhlE [Serratia proteamaculans 568]
gi|157321338|gb|ABV40435.1| DEAD/DEAH box helicase domain protein [Serratia proteamaculans 568]
Length = 456
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 245/412 (59%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+++GL +L+A+ + GY +PT +Q QAIP + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFETLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFA----SSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ + K + PV R L+LTPTRELA Q+
Sbjct: 61 QLLSKHDHAVKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
E Y Y++ ++++ + GG+ QM L ++L+ATPGRL+D + ++ S ++IL
Sbjct: 95 VESYSKYLR-LRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQRAVDLSKIEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +A + +P ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKGLANKLLHNPASVEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ I QS+ FVD K LL ++ + Q +VF TK A+ +A++LN G A
Sbjct: 214 NTASEQIEQSVHFVDK-KRKRELLSQMIGEGDWKQVLVFNRTKHGANHLAEQLNKDGITA 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G+I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKDGKIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA R G A+SLV E ++ IER K++IP + G+EP I+
Sbjct: 333 IGRTGRAERTGEAISLVCVDEHKLLRDIERLLKREIPRIALPGYEPDPSIKA 384
>gi|452964578|gb|EME69615.1| superfamily II DNA/RNA helicase [Magnetospirillum sp. SO-1]
Length = 480
Score = 307 bits (787), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 174/394 (44%), Positives = 241/394 (61%), Gaps = 27/394 (6%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F +GL E +LKAL GYT PT +QEQ+IP I GRD++ +QTG+GKTA+F LP L +
Sbjct: 5 FSELGLAEPLLKALEAEGYTSPTPIQEQSIPHLIEGRDVLGLAQTGTGKTASFALPLLQR 64
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
+ K R P R+LVLTPTRELA+QV + + YG
Sbjct: 65 LDTFKK-----------------------RAMPKSCRVLVLTPTRELAVQVGQSFKTYGC 101
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+ + A+ + GG+ + Q++ ++ ++L+ATPGRL+D ++ G I ++ LVLDEAD
Sbjct: 102 HYRLRHAL-VFGGVGMVPQIKTMAGGVDVLVATPGRLLDLIDQGAIRLDSVEALVLDEAD 160
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATL-DGIVGNMAENITKDPLILKVNSIEKKQK 241
RMLDMGFI I KIV P RQT+LFSAT+ D IVG +A ++ P+ ++V +
Sbjct: 161 RMLDMGFIQPIRKIVAMVPKQRQTVLFSATMPDSIVG-LANSVLHTPVRVEVTPVSSTVD 219
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
I Q +LFVD HK LL +L V +A+VFT TK A+ + + L +G A +HG
Sbjct: 220 KIDQKVLFVDR-EHKRTLLTDILATDDVKRALVFTRTKHGANRVVELLEKAGITADAIHG 278
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ Q AR + L + R GRIK LVATD+AARGIDV ITHV N++LP PE YVHRIGRT
Sbjct: 279 NKSQGARQKALADFRDGRIKALVATDIAARGIDVDGITHVINFELPNEPESYVHRIGRTA 338
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIE 395
RAG +G A+SL + E ++ IE+ +Q +P++
Sbjct: 339 RAGASGIALSLCDGDEVAYLRDIEKTIRQAVPVD 372
>gi|91789374|ref|YP_550326.1| DEAD/DEAH box helicase [Polaromonas sp. JS666]
gi|91698599|gb|ABE45428.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
Length = 579
Score = 307 bits (787), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 172/401 (42%), Positives = 243/401 (60%), Gaps = 22/401 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+ + L +LKA+++ GY PT +Q QAIPA ++G DL+ +QTG+GKTAAF LP L
Sbjct: 1 MTFEELKLAPAILKAVLEQGYDTPTPIQAQAIPAVLAGSDLLGGAQTGTGKTAAFTLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ ++ P + N R L++TPTRELA QV + Y
Sbjct: 61 QRLSTE----PRLTNRRGVNAV----------------RALIMTPTRELAAQVEESVRTY 100
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ + ++ + GG+ Q+ L R +IL+ATPGRL+DH G ++ S +QILVLDE
Sbjct: 101 GKYLD-LTSMVMFGGVGMGAQIDKLRRGVDILVATPGRLLDHAGQGTLDLSQVQILVLDE 159
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI+K++ P +Q++LFSAT + +A + +DPL ++V
Sbjct: 160 ADRMLDMGFIHDIKKVLALVPKHKQSLLFSATFSDEIRELANGLLRDPLHIQVTPRNTTV 219
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ ITQ+I V K LL +++ + Q +VFT TK A+ +A+ L +G A LH
Sbjct: 220 QRITQTIHPVGRS-KKKALLTHIINEHNWSQVLVFTRTKFGANNVAEHLTKNGIEAMALH 278
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + L+ + G I+ LVATD+AARGID+ + HV NY++P EDYVHRIGRT
Sbjct: 279 GNKSQTARTQALQGFKDGTIRALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRT 338
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
GRAG +G AVSLV E ++ IERFTKQ I ++ GFE
Sbjct: 339 GRAGNSGEAVSLVCLDEEGFMQDIERFTKQNIEKVLVPGFE 379
>gi|453328727|dbj|GAC89023.1| ATP-dependent RNA helicase [Gluconobacter thailandicus NBRC 3255]
Length = 435
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 168/393 (42%), Positives = 236/393 (60%), Gaps = 25/393 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F + L E + KAL + GYT PT +Q AIP + GRDL+ +QTG+GKTAAF LP L
Sbjct: 3 SFAELNLAEPIQKALAEEGYTTPTPIQAGAIPYLLEGRDLLGLAQTGTGKTAAFALPILD 62
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
Y + R P R+LVL PTRELA Q+ + Y
Sbjct: 63 -----------------------YLLRNRRPPAPKTVRVLVLAPTRELASQIDESFGAYA 99
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+MK A+ + GG+ RQ++ R ++L+A PGRL+D + G I+ S L++LVLDEA
Sbjct: 100 RHMKLSHAV-VFGGVGQGRQIEATRRGVDVLVAAPGRLLDLVGQGYIDLSALEVLVLDEA 158
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGF+ DI +I+ P RQT+LFSAT+ + ++A ++ +P ++V
Sbjct: 159 DRMLDMGFVRDIRRIMALLPARRQTVLFSATMPQSISDLAHSLLSNPATVQVTPESSTVD 218
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
I Q+++FV+ K+ L L+ V +AVVFT K +A+ +A+ LN +G A +HG
Sbjct: 219 RIRQAVMFVESEKKKDATL-MLVESSNVVRAVVFTLMKHEANKVAEFLNKNGITAEAIHG 277
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ Q AR R + R G +K+LVATD+AARGIDV ++HVFNYDLP PE YVHRIGRT
Sbjct: 278 NKSQGARERAMSGFRTGTVKVLVATDIAARGIDVDDVSHVFNYDLPNVPESYVHRIGRTA 337
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
RAGR+G+AVSL + +R +K IE+ + IP+
Sbjct: 338 RAGRDGWAVSLCDAEQRAWLKDIEKKIDKAIPV 370
>gi|416771944|ref|ZP_11873090.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008287]
gi|323268735|gb|EGA52195.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
Length = 404
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 243/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITHQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + ++PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLRNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL ++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTPGYEPDPSIKA 384
>gi|262164808|ref|ZP_06032546.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM223]
gi|262027188|gb|EEY45855.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM223]
Length = 464
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 170/402 (42%), Positives = 239/402 (59%), Gaps = 26/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S+GL +LKA+ + GY P+ +Q QAIPA ++G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
A K P ++ N Q R L+LTPTRELA Q+ Y
Sbjct: 61 ELLA----KGPRVRAN--------------------QVRALILTPTRELAAQIQDNVLIY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +K+ + GG+ QMQ + + ++L+ATPGRL+D N I F L+ILVLDE
Sbjct: 97 GRHLP-LKSAVVFGGVKINPQMQRMCKGADVLVATPGRLMDLYNQNAIKFDQLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ +LFSAT + +A+ + +P+ + V+
Sbjct: 156 ADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I + D+ K +L L+++ Q +VF TK A+ +A LN G AA +H
Sbjct: 216 RTVEQCI-YPADVKKKPAMLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G ++ILVATD+AARGID+P + V N++LPK EDYVHRIGRT
Sbjct: 275 GNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G A+SLV+ E + IER T+ +P + GFEP
Sbjct: 335 GRAGEVGKAISLVSAIEAPELFAIERLTQALLPRINLAGFEP 376
>gi|407715860|ref|YP_006837140.1| ATP-dependent RNA helicase RhlE [Cycloclasticus sp. P1]
gi|407256196|gb|AFT66637.1| ATP-dependent RNA helicase RhlE [Cycloclasticus sp. P1]
Length = 442
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 169/407 (41%), Positives = 240/407 (58%), Gaps = 24/407 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL ++ A+ K GYT+PT +Q Q+IP + GRDL+ +QTG+GKTA+F LP L
Sbjct: 1 MSFDSLGLRAELITAVSKKGYTEPTSIQAQSIPLILEGRDLMGGAQTGTGKTASFTLPVL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ S + P K + R LVLTPTRELA QV + Y
Sbjct: 61 QRLMESGDAKP----------------------KAGKVRALVLTPTRELAAQVAESVRDY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ + + I GG+ Q Q L + +IL+ATPGRL+DH++ ++ S ++ILVLDE
Sbjct: 99 GQHLP-LSSFVIFGGVNINPQKQKLRKGVDILVATPGRLLDHVSQNTVDLSSVEILVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI K++ P +QT+LFSAT + + ++ +P +++V
Sbjct: 158 ADRMLDMGFIRDIRKVLALLPQQKQTLLFSATFSNEIKKLTSSLLHNPALVEVAKENSAS 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I+Q + VD K LL +L+ Q +VFT TK A+ ++++LN G AA +H
Sbjct: 218 ELISQVVHPVDK-KRKRELLSFLIGSNDWKQVLVFTRTKHGANKLSEQLNKDGITAAAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + L N + I++LVATD+AARG+D+ + HV N++LP PEDYVHRIGRT
Sbjct: 277 GNKSQGARTKALANFKSNDIRVLVATDIAARGLDIDQLPHVVNFELPNVPEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIR 407
GRAG G A+SLV E +K IER K I G+EP I+
Sbjct: 337 GRAGSEGEAMSLVCVDELKLLKGIERLIKTDIKKVTFEGYEPDLSIK 383
>gi|152995016|ref|YP_001339851.1| DEAD/DEAH box helicase [Marinomonas sp. MWYL1]
gi|150835940|gb|ABR69916.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
Length = 463
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 170/402 (42%), Positives = 241/402 (59%), Gaps = 26/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F +GL +LKA+ GYT+P+ +Q QAIPA + G+D++ ++QTG+GKTA F LP L
Sbjct: 5 MSFNKLGLSAPILKAIEDQGYTEPSAIQAQAIPAILEGQDVMAAAQTGTGKTAGFTLPLL 64
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
++ K N +N++ R LVLTPTRELA QV + + Y
Sbjct: 65 E----------ILSKGENAQSNQV--------------RALVLTPTRELAAQVAESVKNY 100
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +K+ + GG+ QM L R +IL+ATPGR++D N + F L++LVLDE
Sbjct: 101 GQHLS-LKSTVVFGGVKINPQMMALRRGADILIATPGRMMDLYNQKAVRFDKLEVLVLDE 159
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI+KI+ P RQ +LFSAT + +A+ + +P+ + V
Sbjct: 160 ADRMLDMGFIHDIKKILAILPKKRQNLLFSATFSPEIRQLAKGLVNNPIEISVTPRNATA 219
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
++ Q + VD K LL L+ D R QA+VF+ TK A+ I +L +G A+ +H
Sbjct: 220 VSVEQWLHPVDK-KRKTELLIQLIADGRWDQALVFSRTKHGANKITKQLEDAGIRASAIH 278
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + GRI+ILVATD+AARG+D+ + HV N+DLP EDYVHRIGRT
Sbjct: 279 GNKSQGARTRALADFKEGRIRILVATDIAARGLDIEQLPHVVNFDLPDVAEDYVHRIGRT 338
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G A+SLV E ++ IER T++ I + F P
Sbjct: 339 GRAGATGKAISLVAADELDQLRAIERLTQKLIERRYEDDFMP 380
>gi|157737720|ref|YP_001490403.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri RM4018]
gi|157699574|gb|ABV67734.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri RM4018]
Length = 435
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 178/461 (38%), Positives = 263/461 (57%), Gaps = 39/461 (8%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F ++GL + +L+A+ + GYT PT +Q ++IP +S +D++ ++QTG+GKTA F LP L
Sbjct: 1 MSFSNLGLCKEILRAIKEEGYTTPTPIQSKSIPVILSKKDVLAAAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ S + K Q R L+LTPTRELA QV + E Y
Sbjct: 61 QRLKDS-----------------------NFKDKKTQVRALILTPTRELAAQVAQSVETY 97
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ K+ I GG+ Q LL + +I++ATPGRL+D ++ ++ S ++ LVLDE
Sbjct: 98 GKYLP-FKSAVIFGGVGINPQKALLKKGVDIIIATPGRLLDLISQDSLDLSKIEFLVLDE 156
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFINDI+KI+ P RQ +LFSAT + +A+ + K P++++V+
Sbjct: 157 ADRMLDMGFINDIKKILAILPKQRQNLLFSATFSNEIKKLADGLLKSPVLVEVSKANSAS 216
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ Q + VD K LL +L+ Q +VFT TK A+ +++ L +A +H
Sbjct: 217 FKVEQVVHHVDKD-RKKELLLHLVNKNSWQQVLVFTRTKHGANKLSEALVKDKITSAAIH 275
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + L++ + G++++LVATD+AARGID+ + HV N++LP EDYVHRIGRT
Sbjct: 276 GNKSQGARTKALDDFKNGKVRVLVATDIAARGIDIEQLPHVVNFELPNVAEDYVHRIGRT 335
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRYRFNNNNW 420
GRAG NG A+SLV E + IE+ KQ+I INGF+ I+ R N N
Sbjct: 336 GRAGNNGIAISLVCVDEHEYLFGIEKLIKQKIKKVEINGFKVNPNIKAEPIGNRSNRGNK 395
Query: 421 ------------KTHNINKSNITKRFYRQIKKTSISASSKN 449
K N + S +KRF + ++T + SSKN
Sbjct: 396 ANNSNQNRKVKPKDENSSSSTKSKRFASRNRRT--NTSSKN 434
>gi|421887362|ref|ZP_16318522.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
gi|379983078|emb|CCF90795.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
Length = 453
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 167/412 (40%), Positives = 243/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITHQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ ++++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-VRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + ++PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLRNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL ++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTPGYEPDPSIKA 384
>gi|386702440|ref|YP_006166277.1| ATP-dependent RNA helicase RhlE [Escherichia coli KO11FL]
gi|383393967|gb|AFH18925.1| ATP-dependent RNA helicase RhlE [Escherichia coli KO11FL]
Length = 454
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q ++FT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLMFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|417517052|ref|ZP_12179792.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Uganda str. R8-3404]
gi|353652558|gb|EHC94352.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Uganda str. R8-3404]
Length = 453
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 243/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITHQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + ++PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDICRVLAKLPAKRQNLLFSATFSDDIKALAEKLLRNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL ++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTPGYEPDPSIKA 384
>gi|254491257|ref|ZP_05104438.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxidans
DMS010]
gi|224463770|gb|EEF80038.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxydans
DMS010]
Length = 442
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 167/409 (40%), Positives = 239/409 (58%), Gaps = 32/409 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S+GL + +L+A+ + GY P+ +Q +AIP + G D++ ++QTG+GKTA F LP L
Sbjct: 1 MTFSSLGLADPILQAISEQGYDTPSPIQAKAIPPIMQGHDVMAAAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPA---QPRMLVLTPTRELALQVTAAT 117
H+ AS K PA Q R LVLTPTRELA QV +
Sbjct: 61 HRLASGK---------------------------PASANQVRALVLTPTRELAAQVADSV 93
Query: 118 ERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILV 177
+ YG ++ +++ + GG+ QM L R +IL+ATPGRL+D + F HL++L+
Sbjct: 94 QTYGKFLP-LRSTVVFGGVKINPQMMRLRRGADILVATPGRLLDLYQQNAVRFDHLEVLI 152
Query: 178 LDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIE 237
LDEADRMLDMGFI+DI KI+ P RQ ++FSAT + ++A+ + +P+ + V+
Sbjct: 153 LDEADRMLDMGFIHDIRKIISFLPKKRQNLMFSATFSTDIRSLAKTLVNNPIEISVSPAN 212
Query: 238 KKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+ Q I VD K LL L+ + Q +VF+ TK A+ + L G AA
Sbjct: 213 STATTVKQWIAPVDK-KKKPELLSQLINTHQWTQVLVFSRTKHGANKLTRHLESVGLSAA 271
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
+HG+ Q AR + L + + G +ILVATD+AARG+D+ + HV N+DLP EDYVHRI
Sbjct: 272 AIHGNKSQGARTKALADFKAGDKQILVATDIAARGLDIDQLPHVVNFDLPNVAEDYVHRI 331
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
GRTGRAG G A+SLV+ E ++ IER + +P EV+ GFEP+ +
Sbjct: 332 GRTGRAGATGEAISLVSADEVEHLWNIERLIGKNLPREVVEGFEPQHDV 380
>gi|357031821|ref|ZP_09093763.1| ATP-dependent RNA helicase [Gluconobacter morbifer G707]
gi|356414601|gb|EHH68246.1| ATP-dependent RNA helicase [Gluconobacter morbifer G707]
Length = 437
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 171/393 (43%), Positives = 236/393 (60%), Gaps = 25/393 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F + L E + KAL + GYT PT +Q AIP + GRDL+ +QTG+GKTAAF LP L
Sbjct: 3 SFAELNLAEPIQKALAEEGYTTPTPIQAGAIPHLLQGRDLLGLAQTGTGKTAAFALPILD 62
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
Y + R P + R LVL PTRELA Q+ + Y
Sbjct: 63 -----------------------YLLRNRKAPSPKKVRALVLAPTRELASQIGESFAAYA 99
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+MK A+ + GG+ RQ++ R ++L+A PGRL+D + G I+ S L+ILVLDEA
Sbjct: 100 RHMKFSHAV-VFGGVGQGRQVEATRRGVDVLVAAPGRLLDLIGQGYIDLSALEILVLDEA 158
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGF+ DI++I+ P RQT+LFSAT+ + ++A ++ KDP ++V
Sbjct: 159 DRMLDMGFVKDIQRIMALLPKERQTLLFSATMPPSIRDLAHSLLKDPATVQVTPESSTVD 218
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
I Q+++FVD K+ L LL V +AVVFT K +A+ +++ LN +G A +HG
Sbjct: 219 RIRQAVMFVDAENKKDAAL-MLLDSPNVVRAVVFTLMKHEANKVSEFLNKNGIRAEAIHG 277
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ Q AR R + R G +K LVATD+AARGIDV ++HVFNYDLP PE YVHRIGRT
Sbjct: 278 NKSQGARERAMAGFRNGTVKALVATDIAARGIDVDDVSHVFNYDLPNVPESYVHRIGRTA 337
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
RAGR G+AVSL + +R ++ IE+ + IP+
Sbjct: 338 RAGREGWAVSLCDAEQRAWLRDIEKKIGKDIPV 370
>gi|260866964|ref|YP_003233366.1| RNA helicase RhlE [Escherichia coli O111:H- str. 11128]
gi|415824802|ref|ZP_11513036.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli OK1180]
gi|417193204|ref|ZP_12015051.1| ATP-dependent RNA helicase RhlE [Escherichia coli 4.0522]
gi|417209507|ref|ZP_12020791.1| ATP-dependent RNA helicase RhlE [Escherichia coli JB1-95]
gi|417590515|ref|ZP_12241230.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 2534-86]
gi|419195910|ref|ZP_13739314.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC8A]
gi|419202149|ref|ZP_13745371.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC8B]
gi|419887299|ref|ZP_14407895.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H8 str.
CVM9570]
gi|419894549|ref|ZP_14414445.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H8 str.
CVM9574]
gi|420088816|ref|ZP_14600676.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H8 str.
CVM9602]
gi|420094200|ref|ZP_14605802.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H8 str.
CVM9634]
gi|424769471|ref|ZP_18196698.1| RNA helicase RhlE [Escherichia coli O111:H8 str. CFSAN001632]
gi|257763320|dbj|BAI34815.1| RNA helicase RhlE [Escherichia coli O111:H- str. 11128]
gi|323175585|gb|EFZ61180.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli OK1180]
gi|345344461|gb|EGW76828.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 2534-86]
gi|378051718|gb|EHW14033.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC8A]
gi|378055793|gb|EHW18054.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC8B]
gi|386190385|gb|EIH79133.1| ATP-dependent RNA helicase RhlE [Escherichia coli 4.0522]
gi|386196132|gb|EIH90358.1| ATP-dependent RNA helicase RhlE [Escherichia coli JB1-95]
gi|388363164|gb|EIL27104.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H8 str.
CVM9570]
gi|388363386|gb|EIL27315.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H8 str.
CVM9574]
gi|394389606|gb|EJE66748.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H8 str.
CVM9602]
gi|394396885|gb|EJE73216.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H8 str.
CVM9634]
gi|421944120|gb|EKU01382.1| RNA helicase RhlE [Escherichia coli O111:H8 str. CFSAN001632]
Length = 454
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 241/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I +LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDICVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|414166998|ref|ZP_11423228.1| hypothetical protein HMPREF9696_01083 [Afipia clevelandensis ATCC
49720]
gi|410892276|gb|EKS40071.1| hypothetical protein HMPREF9696_01083 [Afipia clevelandensis ATCC
49720]
Length = 469
Score = 307 bits (787), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 165/394 (41%), Positives = 241/394 (61%), Gaps = 28/394 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F ++GL + VL A+ GYT PT +QEQAIP +S RD++ +QTG+GKTAAF LP
Sbjct: 1 MSFSNLGLSDKVLAAVAATGYTTPTPIQEQAIPHVLSRRDVLGIAQTGTGKTAAFTLP-- 58
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ T E+ R + PR L+L PTRELA QV ++Y
Sbjct: 59 -----------------------MITLLEKGRARALMPRTLILEPTRELAAQVKENFDKY 95
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G +K+ ++GG+ + Q LSR ++L+ATPGRL+DH GK+ + +++LV+DE
Sbjct: 96 G-AGQKLNVALLIGGVSFGDQDLKLSRGVDVLIATPGRLLDHTERGKLLLTGIEVLVIDE 154
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DIE+I P TRQT+ F+AT+ + + E +P+ ++V+
Sbjct: 155 ADRMLDMGFIPDIERICKLVPFTRQTLFFTATMPSEIRRITETFLHNPVKVEVSKPASTA 214
Query: 241 KNITQSILFVDDILHKNR-LLDYLLRD-KRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+TQ + H+ R +L LLRD K + A++F KRD ++ L GF
Sbjct: 215 VTVTQFHVNTGREPHEKREMLRQLLRDAKDLKNAIIFCNRKRDVAVVYKSLQKHGFSVGA 274
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
LHGD+ Q+AR +L+ R+G + +LVA+DVAARG+D+P ++HVFN+D+P P+DYVHRIG
Sbjct: 275 LHGDMDQSARTASLDQFRKGELPLLVASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRIG 334
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQI 392
RTGRAGR G A+S+V+ A++ ++ IE+ Q I
Sbjct: 335 RTGRAGRLGTAISIVSPADQKSLAAIEKLIGQPI 368
>gi|237807743|ref|YP_002892183.1| DEAD/DEAH box helicase [Tolumonas auensis DSM 9187]
gi|237500004|gb|ACQ92597.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
Length = 438
Score = 307 bits (787), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 159/407 (39%), Positives = 247/407 (60%), Gaps = 26/407 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+S+ L ++L+A+ ++G+ +PT +Q Q IP A+ GRD++ S+ TG+GKTAAF+LP +
Sbjct: 1 MSFESLELDPVLLQAVEELGFKRPTTIQSQVIPVAMEGRDVMASAPTGTGKTAAFLLPIM 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
P R +P R L+LTPTRELALQ+T E
Sbjct: 61 QHMID----FP--------------------RRRPGPARALILTPTRELALQITEQAEAL 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y +K SI+GG+ +Q+ L + +I++ATPGRL+ ++ + + ++ILVLDE
Sbjct: 97 AAYTH-MKVASIIGGVAEEKQLPALEKTVDIIIATPGRLMQYIEDERFDSRDIEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGI-VGNMAENITKDPLILKVNSIEKK 239
ADRMLDMGFI D+++I +QTMLFSATL+G + AE++ KDP L +
Sbjct: 156 ADRMLDMGFIGDVDRIAAEARWRKQTMLFSATLEGAGLKKFAEDLLKDPAELYAEPPRSE 215
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+K I Q + F D HK LL YLL+ + V ++++F T+ + +L +G A L
Sbjct: 216 RKKIQQLVYFADTAEHKFNLLKYLLQQEDVTRSIIFVKTRERLAELVSQLQANGIDCAWL 275
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
G++ Q R L R R+KILVATDVA+RGID+P ++HVFNYD+P+ + Y+HRIGR
Sbjct: 276 RGEMEQEKRIEALNRFRSDRVKILVATDVASRGIDLPDVSHVFNYDMPRSADTYIHRIGR 335
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
TGRAG+ G A++L+ + ++++ER+ ++++ V++ P+ +I
Sbjct: 336 TGRAGKKGCAINLIEAHDVGMMERVERYAEEKMMRRVVDSMRPQHKI 382
>gi|89093138|ref|ZP_01166088.1| ATP-dependent RNA helicase [Neptuniibacter caesariensis]
gi|89082434|gb|EAR61656.1| ATP-dependent RNA helicase [Neptuniibacter caesariensis]
Length = 417
Score = 307 bits (787), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 172/404 (42%), Positives = 243/404 (60%), Gaps = 30/404 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL + L +GY +PT +Q++AIPA + G DLI +++TGSGKTA F+LP L
Sbjct: 1 MSFVSLGLSDFFTSTLSSLGYKEPTAIQDKAIPAVLKGHDLIAAAETGSGKTAGFVLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
K S IP NL TH LVL PTRELA+QV+ + +RY
Sbjct: 61 EKLHS----IPAPGNNL--------TH------------ALVLVPTRELAVQVSQSVDRY 96
Query: 121 GLYM-KKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
+KI++++I GG QMQ LS+ +I++ATPGRL+D M ++ L+ LVLD
Sbjct: 97 SENCPRKIRSVAIYGGAAINPQMQSLSKGCDIVVATPGRLLDLMRKNALDLRGLKALVLD 156
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLD+GF ++++ I+D TP QT+LFSAT V + E + ++P+ + V
Sbjct: 157 EADRMLDLGFADELDDILDQTPGNVQTLLFSATFPDKVKELTEELLRNPVEISVKQEATL 216
Query: 240 QKNITQSILFVDDILHKNR--LLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAA 297
+ Q + VD NR LL +L++ ++ Q ++F +KR A+ I +L SG ++
Sbjct: 217 PDQLHQRAIEVD---RNNRTMLLKHLIKQEKWQQLLIFVGSKRTANNIELKLYRSGIQSS 273
Query: 298 PLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 357
LHGDL Q R LE+ +GR KIL+ATD+AARGID+P++ V NYDLP+ DYVHR
Sbjct: 274 TLHGDLTQKERLGALEDFSKGRCKILIATDLAARGIDIPSLPCVLNYDLPRATSDYVHRA 333
Query: 358 GRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
GRT RAG G A+S V+H + K IE+ + +IP E I GFE
Sbjct: 334 GRTARAGEAGLAISFVDHESDAHFKLIEKRIRMKIPREQIPGFE 377
>gi|417381863|ref|ZP_12147999.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Johannesburg str. S5-703]
gi|353616624|gb|EHC67835.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Johannesburg str. S5-703]
Length = 397
Score = 307 bits (787), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 243/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITHQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + ++PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLRNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL ++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTPGYEPDPSIKA 384
>gi|456358119|dbj|BAM92564.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain,
RhlE protein [Agromonas oligotrophica S58]
Length = 471
Score = 307 bits (787), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 168/395 (42%), Positives = 239/395 (60%), Gaps = 26/395 (6%)
Query: 2 NFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALH 61
+F+ L + + +AL + YT PT +Q Q IP A+ GRD++ +QTG+GKTA+F LP LH
Sbjct: 3 SFQDFNLADALTRALKEENYTTPTPIQAQTIPIALQGRDVVGIAQTGTGKTASFALPILH 62
Query: 62 KFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYG 121
+ + R++ +P R+LVL+PTREL+ Q+ + YG
Sbjct: 63 RLL-----------------------ENRIKPQPKTARVLVLSPTRELSGQILDSFNTYG 99
Query: 122 LYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEA 181
+++ A++I GG+P RQ++ + E+L+ATPGRL+D + + SH++ LVLDEA
Sbjct: 100 RHIRLSSALAI-GGVPMGRQVRAVMPGLEVLVATPGRLLDLVQGNALKLSHVEFLVLDEA 158
Query: 182 DRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQK 241
DRMLDMGFINDI KIV P+ RQT+ FSAT+ + +A+ + +DP + V + +
Sbjct: 159 DRMLDMGFINDIRKIVAKLPIKRQTLFFSATMPKDIAELADAMLRDPARVAVTPVSSTVE 218
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
I Q ++ VD N LL LL+ + V +A+VFT TK AD + L +G A +HG
Sbjct: 219 RIAQRVIQVDHSAKPN-LLAQLLKQEPVNRALVFTRTKHGADKVVKSLEKAGIPAQAIHG 277
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ QN R RTL R G I+ LVATD+AARGIDV ++HV N+DLP PE YVHRIGRT
Sbjct: 278 NKSQNHRERTLAAFRTGEIRTLVATDIAARGIDVDGVSHVVNFDLPNVPETYVHRIGRTA 337
Query: 362 RAGRNGFAVSLVNHAERMN-IKKIERFTKQQIPIE 395
RAG G A+SLV + M+ ++ IER K +P E
Sbjct: 338 RAGAEGVAISLVAGPDEMSYLRDIERLIKVSLPRE 372
>gi|320538877|ref|ZP_08038553.1| putative RNA helicase [Serratia symbiotica str. Tucson]
gi|320031037|gb|EFW13040.1| putative RNA helicase [Serratia symbiotica str. Tucson]
Length = 437
Score = 307 bits (787), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 245/412 (59%), Gaps = 33/412 (8%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+FK++GL +L+A+ + GY +PT +Q QAIP ++GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFKTLGLSAEILRAVEEQGYREPTPIQRQAIPMVLAGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QLLSQHEQPAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
+ Y Y++ ++++ + GG+ QM L +IL+ATPGRL+D + ++ S ++IL
Sbjct: 95 VDAYSKYLR-LRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLD-LEQNAVDLSKIEIL 152
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +A + +P ++V
Sbjct: 153 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALANKLLHNPASVEVARR 212
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ I QS+ FVD K LL ++ Q +VF TK A+ +A++LN G A
Sbjct: 213 NTASEQIEQSVYFVDK-KRKRELLSQMIGAGDWKQVLVFNRTKHGANHLAEQLNKDGITA 271
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G+I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 272 AAIHGNKSQGARTRALADFKEGKIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHR 331
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA R G A+SLV E ++ IER K++IP + G+EP I+
Sbjct: 332 IGRTGRAERTGEAISLVCVDEHKLLRDIERLLKREIPRIALPGYEPDPTIKA 383
>gi|420369243|ref|ZP_14869968.1| ATP-dependent RNA helicase rhlE [Shigella flexneri 1235-66]
gi|391321569|gb|EIQ78292.1| ATP-dependent RNA helicase rhlE [Shigella flexneri 1235-66]
Length = 447
Score = 307 bits (787), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 243/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ K++ PV R L+LTPTRELA Q+
Sbjct: 61 QHLITHQPHGKSRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLIATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + ++AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKSLAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL ++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTPGYEPDPSIKA 384
>gi|392967075|ref|ZP_10332493.1| DEAD/DEAH box helicase domain protein [Fibrisoma limi BUZ 3]
gi|387843872|emb|CCH54541.1| DEAD/DEAH box helicase domain protein [Fibrisoma limi BUZ 3]
Length = 421
Score = 307 bits (787), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 166/395 (42%), Positives = 238/395 (60%), Gaps = 26/395 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F + L +L AL + GYT PT +QEQAIP +S RDL+ +QTG+GKTAAF +P L
Sbjct: 1 MLFSELPLISPILTALSEEGYTNPTPIQEQAIPPLLSRRDLLGCAQTGTGKTAAFAIPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFK-PAQPRMLVLTPTRELALQVTAATER 119
H++R + + P + R L+LTPTRELA+Q+ +
Sbjct: 61 QLL-----------------------HEDRKQQQGPRRIRALILTPTRELAIQIGESFAA 97
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
YG ++ ++ I GG+ Q+ L ++L+ATPGRL+D MN G I+ ++ + VLD
Sbjct: 98 YGRHLN-VRHTVIFGGVSQHAQVNALKSGIDVLIATPGRLLDLMNQGFISLRNIDLFVLD 156
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+D++K++ P RQ++ FSAT+ V +A++I P+ ++V +
Sbjct: 157 EADRMLDMGFIHDVKKVIVKLPTQRQSLFFSATMPPDVAKLADSILNKPVKVEVTPVSST 216
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
I QS+ FVD K +LL ++L DKR+ A+VF TK AD +A L +G A +
Sbjct: 217 ADTIQQSVYFVDKN-DKRKLLVHVLNDKRIASALVFARTKHGADKVAKDLVKAGIKAEAI 275
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HG+ QNAR R L N + + ++LVATD+AARGIDV ++HV NY+LP PE YVHRIGR
Sbjct: 276 HGNKSQNARQRALSNFKSRQTRVLVATDIAARGIDVEELSHVINYELPNVPETYVHRIGR 335
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
TGRAG NG A+S + E +K I + + +P+
Sbjct: 336 TGRAGHNGIALSFCDAEETAYLKDIHKLIGKHVPV 370
>gi|417332448|ref|ZP_12116332.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Alachua str. R6-377]
gi|353581688|gb|EHC42550.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Alachua str. R6-377]
Length = 412
Score = 307 bits (787), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 168/409 (41%), Positives = 249/409 (60%), Gaps = 19/409 (4%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP
Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPG- 59
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP-RMLVLTPTRELALQVTAATER 119
+P+++ + TH+ + + +P R L+LTPTRELA Q+
Sbjct: 60 -----GVFTLPLLQH--------LITHQPHAKGR--RPVRALILTPTRELAAQIGENVRD 104
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++ILVLD
Sbjct: 105 YSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLD 163
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + ++PL ++V
Sbjct: 164 EADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTA 223
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+ +TQ + FVD K LL ++ Q +VFT TK A+ +A++LN G +A +
Sbjct: 224 SEQVTQHVHFVDK-KRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAI 282
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHRIGR
Sbjct: 283 HGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGR 342
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
TGRA G A+SLV E ++ IE+ K++IP G+EP I+
Sbjct: 343 TGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTPGYEPDPSIKA 391
>gi|343501974|ref|ZP_08739839.1| ATP-dependent RNA helicase [Vibrio tubiashii ATCC 19109]
gi|418479062|ref|ZP_13048155.1| hypothetical protein VT1337_11642 [Vibrio tubiashii NCIMB 1337 =
ATCC 19106]
gi|342816163|gb|EGU51067.1| ATP-dependent RNA helicase [Vibrio tubiashii ATCC 19109]
gi|384573612|gb|EIF04106.1| hypothetical protein VT1337_11642 [Vibrio tubiashii NCIMB 1337 =
ATCC 19106]
Length = 478
Score = 307 bits (787), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 172/402 (42%), Positives = 236/402 (58%), Gaps = 26/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S+GL +LKA+ + GY KP+ +QEQAIPA ++G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MGFTSLGLSAPILKAIEEQGYDKPSPIQEQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + LR K R LVLTPTRELA QV +Y
Sbjct: 61 ERLDNG------------------------LRVKGNHIRALVLTPTRELAAQVQENVFKY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
+ +K+ + + GG+ QM L + ++L+ATPGRL+D I F L++LVLDE
Sbjct: 97 SRH-QKLTSQVVFGGVKVNPQMMKLRKGCDVLVATPGRLLDLYQQNAIKFDQLEVLVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI++ P RQ +LFSAT + +A+ + +P+ + V+
Sbjct: 156 ADRMLDMGFIRDIRKILNLLPAKRQNLLFSATFSPEIRELAKGLVNNPVEVSVSKENSTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
I QSI + D K +L L++D Q +VF TK A+ +A LN G AAP+H
Sbjct: 216 VTIEQSI-YPADKRKKAPMLAKLIQDGNWQQTLVFCRTKHGANRLAFFLNKEGITAAPIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G I++LVATD+AARGID+P + V N++LP EDYVHRIGRT
Sbjct: 275 GNKSQGARTRALADFKSGDIRVLVATDIAARGIDIPQLPQVVNFELPHVSEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G A SLV AE + IER +Q +P + GF+P
Sbjct: 335 GRAGEVGKAYSLVEAAEASELFGIERLIQQVLPRLELEGFKP 376
>gi|126664485|ref|ZP_01735469.1| DNA and RNA helicase [Marinobacter sp. ELB17]
gi|126630811|gb|EBA01425.1| DNA and RNA helicase [Marinobacter sp. ELB17]
Length = 444
Score = 307 bits (786), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 169/406 (41%), Positives = 244/406 (60%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A + GY P+ +Q +AIPA ++G+D++ ++QTG+GKTA F+LP L
Sbjct: 1 MSFSSLGLSEPLVRATLDQGYETPSPIQLKAIPAVLAGKDVMAAAQTGTGKTAGFVLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
L QN T K PR+L+LTPTRELA QV + Y
Sbjct: 61 QM--------------LEQNPR---TGK--------GPRVLILTPTRELAAQVHDSVNLY 95
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+ +A + GG+ QM L + ++L+ATPGRL+D + F+ ++ LVLDE
Sbjct: 96 SRYVP-TRAAVVFGGVKINPQMMKLRKGLDVLVATPGRLMDLYQQNAVRFNEVEFLVLDE 154
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ++LFSAT + +A+ + DP+ + V
Sbjct: 155 ADRMLDMGFIRDIRKILAMLPAKRQSLLFSATFSNEIRTLAKGLLNDPVQIDVAVRNTTA 214
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+++ QS+ VD K LL L+RD Q +VFT TK A+ + ++L G AA +H
Sbjct: 215 ESVIQSVYPVDQS-QKTALLSKLVRDNSWEQVLVFTRTKHGANRLTEKLGKDGITAAAIH 273
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L ++G I++LVATD+AARG+D+ + V N++LP PEDYVHRIGRT
Sbjct: 274 GNKSQGARTRALAEFKQGDIRVLVATDIAARGLDIKQLPQVVNFELPNVPEDYVHRIGRT 333
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
GRAG +G A+SLV+ E + IE+ K+Q+P + + GFEPK +
Sbjct: 334 GRAGESGHALSLVSADELSMLVGIEKLIKKQLPRKEVEGFEPKNNV 379
>gi|224825987|ref|ZP_03699090.1| DEAD/DEAH box helicase domain protein [Pseudogulbenkiania
ferrooxidans 2002]
gi|224601624|gb|EEG07804.1| DEAD/DEAH box helicase domain protein [Pseudogulbenkiania
ferrooxidans 2002]
Length = 562
Score = 307 bits (786), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 169/401 (42%), Positives = 242/401 (60%), Gaps = 26/401 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F +GL E +L+A+ + GYT PT +Q QAIP I G DL+ ++QTG+GKTA F LP L
Sbjct: 4 IKFTDLGLSEPLLRAVAETGYTTPTPIQAQAIPQVIKGGDLLAAAQTGTGKTAGFTLPLL 63
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H+ + TH + +PR LVLTPTRELA QV + Y
Sbjct: 64 HRLGPAP------------------THLK------GRPRALVLTPTRELAAQVEESVRTY 99
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+ K++ + GG+ Q+ L + +IL+ATPGRL+DH ++ S ++ILVLDE
Sbjct: 100 GKYLPH-KSMVMFGGVGINPQIAALRKPLDILVATPGRLLDHAGQKTVDLSGVEILVLDE 158
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI+K++ P RQ +LFSAT + +A+ + +P +++V
Sbjct: 159 ADRMLDMGFIHDIKKVLALLPAKRQNLLFSATFSDEIKVLADRLLNNPQLVEVARRNTAN 218
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q + VD K LL +L+ Q +VFT TK A+ +A++L+ SG AA +H
Sbjct: 219 ELVEQKVHLVDRD-KKTELLTHLISQGDWHQVLVFTRTKHGANRLAEKLDKSGITAAAIH 277
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ QNAR + L + + +++LVATD+AARG+D+ + HV N++LP PEDYVHRIGRT
Sbjct: 278 GNKSQNARTKALADFKANTLQVLVATDIAARGLDIDQLPHVVNFELPNVPEDYVHRIGRT 337
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
GRAG G AVSLV E +K IE+ K+ IP + G+E
Sbjct: 338 GRAGNEGEAVSLVCVDEFKFLKDIEKLIKKDIPQFTVPGYE 378
>gi|295104477|emb|CBL02021.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii
SL3/3]
Length = 641
Score = 307 bits (786), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 164/396 (41%), Positives = 240/396 (60%), Gaps = 28/396 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M FK + L +L+A+ + GY P+ +Q AIP ++GRDL+ +QTG+GKTAAF LP L
Sbjct: 1 MTFKELNLSAPLLRAVQEAGYETPSPIQAAAIPPVLAGRDLMGCAQTGTGKTAAFALPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + N + + R L+LTPTRELALQ+ + E Y
Sbjct: 61 DRLTA----------NAPRRKGAV--------------RALILTPTRELALQIGESFEAY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G Y+K +++ I GG+ Q++ L + +IL+A PGRL D + G I+ S L+I VLDE
Sbjct: 97 GKYLK-LRSTVIFGGVGQAPQVEALKKGVDILIACPGRLNDLIGQGFIDLSALEIFVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF++D++K++ P RQ ++FSAT+ + +A I DP +KV+ +
Sbjct: 156 ADRMLDMGFVHDVKKVIAKLPAQRQNLMFSATMPAEIEQLAAGILHDPAFVKVDPVSSTV 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRD--KRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
I QS+ +V+ +K LL +L+++ V A+VF+ TK AD IA L G AA
Sbjct: 216 DRIQQSLYYVEK-GNKKLLLPWLIKNLQPPVVNALVFSRTKHGADKIAKDLTKQGIPAAA 274
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
+HG+ Q AR LE+ + G+ ++LVATD+AARGID+ ++HVFNYDLP+ PE YVHRIG
Sbjct: 275 IHGNKSQTARVTALEDFKSGKTRVLVATDIAARGIDISELSHVFNYDLPEVPETYVHRIG 334
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
RT RAG +G AVS E+ + IE+ +++IP+
Sbjct: 335 RTARAGADGTAVSFCAPEEQEYLAGIEKLNRRKIPV 370
>gi|399546760|ref|YP_006560068.1| ATP-dependent RNA helicase rhlE [Marinobacter sp. BSs20148]
gi|399162092|gb|AFP32655.1| ATP-dependent RNA helicase rhlE [Marinobacter sp. BSs20148]
Length = 444
Score = 307 bits (786), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 169/406 (41%), Positives = 244/406 (60%), Gaps = 27/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL E +++A + GY P+ +Q +AIPA ++G+D++ ++QTG+GKTA F+LP L
Sbjct: 1 MSFSSLGLSEPLVRATLDQGYETPSPIQLKAIPAVLAGKDVMAAAQTGTGKTAGFVLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
L QN T K PR+L+LTPTRELA QV + Y
Sbjct: 61 QM--------------LEQNPR---TGK--------GPRVLILTPTRELAAQVHDSVNLY 95
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+ +A + GG+ QM L + ++L+ATPGRL+D + F+ ++ LVLDE
Sbjct: 96 SRYVP-TRAAVVFGGVKINPQMMKLRKGLDVLVATPGRLMDLYQQNAVRFNEVEFLVLDE 154
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ++LFSAT + +A+ + DP+ + V
Sbjct: 155 ADRMLDMGFIRDIRKILAMLPAKRQSLLFSATFSNEIRTLAKGLLNDPVQIDVAVRNTTA 214
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+++ QS+ VD K LL L+RD Q +VFT TK A+ + ++L G AA +H
Sbjct: 215 ESVIQSVYPVDQS-QKTALLSKLVRDNSWEQVLVFTRTKHGANRLTEKLGKDGITAAAIH 273
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L ++G I++LVATD+AARG+D+ + V N++LP PEDYVHRIGRT
Sbjct: 274 GNKSQGARTRALAEFKQGDIRVLVATDIAARGLDIKQLPQVVNFELPNVPEDYVHRIGRT 333
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
GRAG +G A+SLV+ E + IE+ K+Q+P + + GFEPK +
Sbjct: 334 GRAGESGHALSLVSADELSMLVGIEKLIKKQLPRKEVEGFEPKNHV 379
>gi|197265494|ref|ZP_03165568.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|197243749|gb|EDY26369.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
Length = 453
Score = 307 bits (786), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 243/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITHQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + ++PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLRNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL ++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTPGYEPDPLIKA 384
>gi|82543242|ref|YP_407189.1| ATP-dependent RNA helicase RhlE [Shigella boydii Sb227]
gi|81244653|gb|ABB65361.1| putative ATP-dependent RNA helicase [Shigella boydii Sb227]
Length = 454
Score = 307 bits (786), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + ++PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLQNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSSDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|258620096|ref|ZP_05715135.1| ATP-dependent RNA helicase [Vibrio mimicus VM573]
gi|424808962|ref|ZP_18234351.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus SX-4]
gi|258587454|gb|EEW12164.1| ATP-dependent RNA helicase [Vibrio mimicus VM573]
gi|342323914|gb|EGU19697.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus SX-4]
Length = 464
Score = 307 bits (786), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 169/402 (42%), Positives = 239/402 (59%), Gaps = 26/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S+GL +LKA+ + GY P+ +Q QAIPA ++G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
A K P ++ N Q R L+LTPTRELA Q+ Y
Sbjct: 61 ELLA----KGPRVRAN--------------------QVRALILTPTRELAAQIQDNVLIY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +K+ + GG+ QMQ + + ++L+ATPGRL+D N + F L+ILVLDE
Sbjct: 97 GRHLP-LKSAVVFGGVKINPQMQRMCKGADVLVATPGRLMDLYNQNAVKFDQLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ +LFSAT + +A+ + +P+ + V+
Sbjct: 156 ADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I + D+ K +L L+++ Q +VF TK A+ +A LN G AA +H
Sbjct: 216 RTVEQCI-YPADVKKKPAMLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G ++ILVATD+AARGID+P + V N++LPK EDYVHRIGRT
Sbjct: 275 GNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G A+SLV+ E + IER T+ +P + GFEP
Sbjct: 335 GRAGEVGKAISLVSAIEAPELFAIERLTQALLPRINLAGFEP 376
>gi|440748527|ref|ZP_20927779.1| ATP-dependent RNA helicase RhlE [Mariniradius saccharolyticus AK6]
gi|436483035|gb|ELP39111.1| ATP-dependent RNA helicase RhlE [Mariniradius saccharolyticus AK6]
Length = 410
Score = 307 bits (786), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 163/394 (41%), Positives = 237/394 (60%), Gaps = 27/394 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M FK++G+ + +L+AL + GYT PT +Q+QAIP + GRDL+ +QTG+GKTAAF +P +
Sbjct: 1 MAFKNLGIIDPILQALAQEGYTTPTPIQQQAIPIVLQGRDLLGCAQTGTGKTAAFAIPII 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
A K P +K L+LTPTRELA+Q+ + Y
Sbjct: 61 QHLAEKKQHRPGIK-------------------------ALILTPTRELAIQIDESFAAY 95
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G + K I I GG+ L Q+ L R ++L+ATPGRL+D + I+ S L+I VLDE
Sbjct: 96 GRFAK-ISHTVIFGGVSQLHQVNALKRGVDVLVATPGRLLDLIGQKYIDLSKLEIFVLDE 154
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+D++K++ P RQT+ FSAT+ + +A+++ P +++V
Sbjct: 155 ADRMLDMGFIHDVKKVIALLPSKRQTLFFSATMPPEIQKLADSLLTHPALVEVTPPSSTV 214
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
I Q + + + K LL YLL++K++G A+VFT TK AD + L A +H
Sbjct: 215 DKIEQRLYYTNK-GDKPALLLYLLQEKKIGSALVFTRTKHGADKVVKLLQREKVKCAAIH 273
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ QN R L + + G++++LVATD+AARGID+ + +VFNYDLP PE YVHRIGRT
Sbjct: 274 GNKSQNNRQNALNDFKSGKLQVLVATDIAARGIDIDELANVFNYDLPNIPETYVHRIGRT 333
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
GRAG +G A+S V+ +K IE+ ++IP+
Sbjct: 334 GRAGNSGLAMSFVDGETLKELKDIEKLIGKKIPV 367
>gi|254513899|ref|ZP_05125960.1| ATP-dependent rna helicase, dead box family [gamma proteobacterium
NOR5-3]
gi|219676142|gb|EED32507.1| ATP-dependent rna helicase, dead box family [gamma proteobacterium
NOR5-3]
Length = 435
Score = 307 bits (786), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 169/406 (41%), Positives = 248/406 (61%), Gaps = 34/406 (8%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
MNF ++GL + KA+ GYT+PT +Q ++IP + G+D++ ++QTG+GKTAAF+LP L
Sbjct: 1 MNFDTLGLLPDLAKAVNDRGYTEPTPIQIKSIPLVLDGQDVLAAAQTGTGKTAAFVLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRF----KPAQPRMLVLTPTRELALQVTAA 116
+RL F K Q R LVLTPTRELA QV A+
Sbjct: 61 ----------------------------QRLAFVGLAKAGQVRTLVLTPTRELAAQVHAS 92
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
E YG Y+ +++ + GG+ Q+ L+R + L+ATPGRL+D G ++FS L++L
Sbjct: 93 VEAYGQYLD-LRSAVVFGGVKAEPQIAALARGVDTLVATPGRLLDLAQQGAVDFSALEVL 151
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +IVD P RQT++FSAT + +A DP+ ++V +
Sbjct: 152 VLDEADRMLDMGFIHDIRRIVDQLPENRQTLMFSATFSNEIRALAAQYLIDPVSVEVAAA 211
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ + Q + + D K LL +LL+ + Q ++F TK A+ + +L +GF A
Sbjct: 212 NSTTE-LVQQMAYPVDRDRKTDLLIHLLKYHQWSQVLIFCRTKHGANRLTKKLLAAGFKA 270
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
AP+HG+ QNAR R L+ + G++++LVATD+AARG+D+ + V N+DLP P+DYVHR
Sbjct: 271 APIHGNKSQNARQRALDEFKTGKLQLLVATDIAARGLDINQLPEVVNFDLPCVPQDYVHR 330
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
IGRTGRAG G + SL+ + ++ IER ++ IP ++GFEP
Sbjct: 331 IGRTGRAGATGRSHSLLASEDLPLLQGIERLIQKAIPRVQVSGFEP 376
>gi|421355390|ref|ZP_15805721.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-45]
gi|395950060|gb|EJH60679.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-45]
Length = 448
Score = 307 bits (786), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 172/410 (41%), Positives = 238/410 (58%), Gaps = 37/410 (9%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M FK +GL +LK L + + T +Q+QAIP I+GRDL+ SS+TGSGKT AF+LP L
Sbjct: 1 MQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
HK +K F PR L+L PTRELA QV Y
Sbjct: 61 HKSLKTKA------------------------FSAKDPRGLILVPTRELAKQV------Y 90
Query: 121 GLYMKKIKAIS-----ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQI 175
G + +S I GG + Q++ L+R P ++ATPGRL DH++ + L+
Sbjct: 91 GELRSMLGGLSYTATLITGGENFNDQVKALARGPRFIVATPGRLADHLDHRSLFLEGLET 150
Query: 176 LVLDEADRMLDMGFINDIEKIVDATP-VTRQTMLFSATLD-GIVGNMAENITKDPLILKV 233
LVLDEADRMLD+GF ++ +I +A RQT++FSATLD V +MA + +P + +
Sbjct: 151 LVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMFSATLDHADVNDMAMELLNEPKRIAI 210
Query: 234 NSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISG 293
++ K+ITQ D + HK LLD +L D Q ++FTAT+ D D + ++LN S
Sbjct: 211 GVGSEEHKDITQHFYLCDHLDHKEALLDRILADAEYRQVIIFTATRADTDRLTEKLNQSN 270
Query: 294 FLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDY 353
A L G+L+Q RN + R KILV TDVA+RG+D+PA+THV N+D+PK E+Y
Sbjct: 271 LKAVALSGNLNQTQRNTIMGQFERAVFKILVTTDVASRGLDIPAVTHVINFDMPKHTEEY 330
Query: 354 VHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPK 403
VHR+GRTGRAG G A+SLV + + K++E F +Q+I EV+ G E K
Sbjct: 331 VHRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFLQQEIQFEVLAGLEGK 380
>gi|417822695|ref|ZP_12469293.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE48]
gi|340048825|gb|EGR09741.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE48]
Length = 464
Score = 307 bits (786), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 169/406 (41%), Positives = 240/406 (59%), Gaps = 26/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S+GL +LKA+ + GY P+ +Q QAIPA ++G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
A K P ++ N Q R L+LTPTRELA Q+ Y
Sbjct: 61 ELLA----KGPKVRAN--------------------QVRALILTPTRELAAQIQDNVMLY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +K+ + GG+ QMQ + + +IL+ATPGRL+D N + F L+ILVLDE
Sbjct: 97 GRHLP-LKSAVVFGGVKINPQMQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ +LFSAT + +A+ + +P+ + V+
Sbjct: 156 ADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I + D+ K +L L+++ Q +VF TK A+ +A LN G A +H
Sbjct: 216 RTVEQCI-YPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTTAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G ++ILVATD+AARGID+P + V N++LPK EDYVHRIGRT
Sbjct: 275 GNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
GRAG G A+SLV+ E + IER T+ +P + GFEP ++
Sbjct: 335 GRAGEVGKAISLVSAIEAPELFAIERLTQALLPRVNLAGFEPTNQL 380
>gi|422908040|ref|ZP_16942819.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE-09]
gi|341642650|gb|EGS66993.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE-09]
Length = 459
Score = 307 bits (786), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 171/406 (42%), Positives = 240/406 (59%), Gaps = 26/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S+GL +LKA+ + GY P+ +Q QAIPA ++G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
A K P ++ N Q R L+LTPTRELA Q+ Y
Sbjct: 61 ELLA----KGPKVRAN--------------------QVRALILTPTRELAAQIQDNVRIY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ A+ + GG+ QMQ + + +IL+ATPGRL+D N + F L+ILVLDE
Sbjct: 97 GRHLPLSSAV-VFGGVKINPQMQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ +LFSAT + +A+ + +P+ + V+
Sbjct: 156 ADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I + D+ K +L L+++ Q +VF TK A+ +A LN G AA +H
Sbjct: 216 RTVEQCI-YPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G I+ILVATD+AARGID+P + V N++LPK EDYVHRIGRT
Sbjct: 275 GNKSQGARTRALADFKAGDIRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
GRAG G A+SLV+ E + IER T+ +P + GFEP ++
Sbjct: 335 GRAGEVGKAISLVSAIEAPELFAIERLTQALLPRINLAGFEPTNQL 380
>gi|119477017|ref|ZP_01617298.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
HTCC2143]
gi|119449824|gb|EAW31061.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
HTCC2143]
Length = 431
Score = 307 bits (786), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 166/402 (41%), Positives = 244/402 (60%), Gaps = 26/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S+GL +L A+ GY P+ +Q QAIPA I G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MTFASLGLSAPILDAVADQGYDTPSPIQAQAIPAVIGGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
K L Q N Q R+L+LTPTRELA QV + Y
Sbjct: 61 ELLIPGK---------LAQAN---------------QARVLILTPTRELAAQVGESVATY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G + +++ + GG+ QM L + ++L+ATPGRL+D N + F HL++LVLDE
Sbjct: 97 GKNLP-LRSAVVFGGVKINPQMMKLRQGVDVLVATPGRLLDLYNQRAVKFDHLEVLVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI+KI+ P RQ +LFSAT + +A+ + +P+ + V+
Sbjct: 156 ADRMLDMGFIHDIKKILAVLPKKRQNLLFSATFSNDIRGLAKGLVNNPVEISVSPANTTV 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+++ I VD K++LL +L++D + Q +VF+ TK A+ +A +L+ +G AA +H
Sbjct: 216 ESVQHWIYPVDKN-QKSKLLIHLIQDNQWSQVLVFSRTKHGANKLAKQLDGAGINAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + L + + G++++LVATD+AARG+D+ + HV N+DLP PEDYVHRIGRT
Sbjct: 275 GNKSQGARTKALADFKGGKVQVLVATDIAARGLDIEQLPHVVNFDLPNVPEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G AVSLV+ E + IER + + + ++GF+P
Sbjct: 335 GRAGATGEAVSLVSADEFKQLSDIERLIGELLQRQSVDGFKP 376
>gi|323499382|ref|ZP_08104358.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
gi|323315567|gb|EGA68602.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
Length = 477
Score = 307 bits (786), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 172/402 (42%), Positives = 233/402 (57%), Gaps = 26/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S+GL +LKA+ + GY KP+ +QEQAIPA + G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MGFTSLGLSAPILKAIEEQGYDKPSPIQEQAIPAVLQGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + R K R LVLTPTRELA QV +Y
Sbjct: 61 ERLDNG------------------------TRVKGNHVRALVLTPTRELAAQVQENVFKY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y +++ + I GG+ QM L + ++L+ATPGRL+D I F L++LVLDE
Sbjct: 97 SRY-QRLTSQVIFGGVKANPQMMKLRKGCDVLVATPGRLLDLYQQNAIKFDQLEVLVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ +LFSAT + +A+ + DP+ + V+
Sbjct: 156 ADRMLDMGFIRDIRKILALLPAKRQNLLFSATFSPEIRELAKGLVNDPVEVSVSKENSTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
I QSI + D K +L +++D Q +VF TK A+ +A LN G AAP+H
Sbjct: 216 VTIEQSI-YPADKRKKAPMLVKMIKDGDWKQTLVFCRTKHGANRLAFFLNKEGITAAPIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G +K+LVATD+AARGID+P + V N++LP EDYVHRIGRT
Sbjct: 275 GNKSQGARTRALADFKSGDVKVLVATDIAARGIDIPQLPQVVNFELPNVSEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G A SLV AE + IER +Q +P + GF+P
Sbjct: 335 GRAGEVGKAYSLVEAAEASELFGIERLIQQVLPRLELEGFKP 376
>gi|262172952|ref|ZP_06040629.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus MB-451]
gi|261890310|gb|EEY36297.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus MB-451]
Length = 464
Score = 307 bits (786), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 169/402 (42%), Positives = 239/402 (59%), Gaps = 26/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S+GL +LKA+ + GY P+ +Q QAIPA ++G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
A K P ++ N Q R L+LTPTRELA Q+ Y
Sbjct: 61 ELLA----KGPRVRAN--------------------QVRALILTPTRELAAQIQDNVLIY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +K+ + GG+ QMQ + + ++L+ATPGRL+D N + F L+ILVLDE
Sbjct: 97 GRHLP-LKSAVVFGGVKINPQMQRMCKGADVLVATPGRLMDLYNQNAVKFDQLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ +LFSAT + +A+ + +P+ + V+
Sbjct: 156 ADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I + D+ K +L L+++ Q +VF TK A+ +A LN G AA +H
Sbjct: 216 RTVEQCI-YPADVKKKPAMLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G ++ILVATD+AARGID+P + V N++LPK EDYVHRIGRT
Sbjct: 275 GNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G A+SLV+ E + IER T+ +P + GFEP
Sbjct: 335 GRAGEVGKAISLVSAIEAPELFAIERLTQALLPRINLAGFEP 376
>gi|422763931|ref|ZP_16817684.1| DEAD/DEAH box helicase [Escherichia coli E1167]
gi|324116221|gb|EGC10143.1| DEAD/DEAH box helicase [Escherichia coli E1167]
Length = 454
Score = 307 bits (786), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 241/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIP + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|157374733|ref|YP_001473333.1| DEAD/DEAH box helicase [Shewanella sediminis HAW-EB3]
gi|157317107|gb|ABV36205.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
HAW-EB3]
Length = 465
Score = 307 bits (786), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 167/405 (41%), Positives = 253/405 (62%), Gaps = 27/405 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
+ F L +LK L +G KPT +Q+QAIP +SG+DL+ SS+TGSGKT AF+LPA+
Sbjct: 20 LQFTDFSLDTRLLKTLDHMGIEKPTEIQQQAIPVGLSGKDLMASSKTGSGKTLAFLLPAM 79
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ S++ + K++ PR+L+L PTRELA QV + R
Sbjct: 80 QRIISTR---ALSKRD---------------------PRVLILLPTRELANQVYSQL-RL 114
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
+ + KA+ ILGG + Q + L R+P ++ATPGRL DH+ ++ + L++L+LDE
Sbjct: 115 LVANTQYKAVKILGGENFNDQAKSLERDPHFVVATPGRLADHLAQHHLHLNGLELLILDE 174
Query: 181 ADRMLDMGFINDIEKI-VDATPVTRQTMLFSATLD-GIVGNMAENITKDPLILKVNSIEK 238
ADRMLD+GF++ ++ I A RQT++FSATLD + +A + KDP+ + + +
Sbjct: 175 ADRMLDLGFVDQLKAINAAADHKRRQTLMFSATLDHNKINEIAAELLKDPMHVSIGAGNI 234
Query: 239 KQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+ +ITQ I D + HK LL+++L++++ Q ++FTAT++D D +A +L +GF A
Sbjct: 235 ENLDITQRIYLSDHLDHKEALLNHILKNEKNKQVIIFTATRQDTDRLATKLAEAGFNTAS 294
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
L GDL QNARN+ ++ RG ILV TDVA+RG+D+ ++ V N+D+PKF E+YVHRIG
Sbjct: 295 LSGDLKQNARNQIMDQFSRGLQDILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIG 354
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPK 403
RTGRAG G A+SLV + +N K+++ F ++ I I+G E K
Sbjct: 355 RTGRAGAKGDAISLVGPKDWVNFKQVQVFLRKTFEISTIDGLEAK 399
>gi|90412948|ref|ZP_01220947.1| putative ATP-dependent RNA helicase, DEAD box family protein
[Photobacterium profundum 3TCK]
gi|90326127|gb|EAS42561.1| putative ATP-dependent RNA helicase, DEAD box family protein
[Photobacterium profundum 3TCK]
Length = 422
Score = 307 bits (786), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 172/433 (39%), Positives = 255/433 (58%), Gaps = 21/433 (4%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+++GL+ ++ + ++G+ PT +QEQAIP ++G D++ +QTG+GKTAAF LP +
Sbjct: 1 MSFQALGLNTQLVDTVTELGFKTPTPIQEQAIPQVLAGDDIMAGAQTGTGKTAAFGLPMI 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ +S+ H E KP R LVLTPTRELA QV + Y
Sbjct: 61 QRLLASQQS----------------EHDEGYIKKPEAIRALVLTPTRELAQQVHDSILAY 104
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
IK GG Q++ L +IL+ATPGRL+DH +G ++ S ++ LVLDE
Sbjct: 105 S-KNTSIKVAVAYGGTSMGVQVKALKSGVDILIATPGRLLDHAFTGTVDLSKIECLVLDE 163
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF+ DI++I+ P RQT+LFSAT V +A +I DP +++V
Sbjct: 164 ADRMLDMGFVVDIKRIMQRMPRKRQTLLFSATFSNQVKKLAYDILADPKLIEVTPENIAA 223
Query: 241 KNITQSILFVDDILHKNR-LLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+++TQ + VD H+ R LL YL+ + Q ++FT TK+ +D +A L + G A +
Sbjct: 224 ESVTQMVYPVDK--HRKRELLSYLIGSRNWNQVLIFTKTKQGSDELAKELILDGIKAVSI 281
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
+GD Q AR R L + + G+++ +VATDVAARG+D+ + +V N+DLP EDYVHRIGR
Sbjct: 282 NGDKSQGARQRALSDFKEGKVRAMVATDVAARGLDIEQLGYVVNFDLPFQAEDYVHRIGR 341
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRYRFNNNN 419
TGRAG G A+SL++ E ++ IE ++P E + G+EP I+ +R R ++ +
Sbjct: 342 TGRAGLTGSAISLMSIDEEWALRAIEELLDTRLPQEWLEGYEPDPTIKAQDNR-RSSSTS 400
Query: 420 WKTHNINKSNITK 432
K KS I K
Sbjct: 401 EKRRIKAKSKIHK 413
>gi|424590984|ref|ZP_18030417.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1037(10)]
gi|408033482|gb|EKG70029.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1037(10)]
Length = 448
Score = 306 bits (785), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 172/410 (41%), Positives = 238/410 (58%), Gaps = 37/410 (9%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M FK +GL +LK L + + T +Q+QAIP I+GRDL+ SS+TGSGKT AF+LP L
Sbjct: 1 MQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
HK +K F PR L+L PTRELA QV Y
Sbjct: 61 HKSLKTKA------------------------FSAKDPRGLILVPTRELAKQV------Y 90
Query: 121 GLYMKKIKAIS-----ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQI 175
G + +S I GG + Q++ L+R P ++ATPGRL DH++ + L+
Sbjct: 91 GELRSMLGGLSYTATLITGGENFNDQVKALARGPRFIVATPGRLADHLDHRSLFLEGLET 150
Query: 176 LVLDEADRMLDMGFINDIEKIVDATP-VTRQTMLFSATLD-GIVGNMAENITKDPLILKV 233
LVLDEADRMLD+GF ++ +I +A RQT++FSATLD V +MA + +P + +
Sbjct: 151 LVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMFSATLDHADVNDMAMELLNEPKRIAI 210
Query: 234 NSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISG 293
++ K+ITQ D + HK LLD +L D Q ++FTAT+ D D + ++LN S
Sbjct: 211 GVGSEEHKDITQHFYLCDHLDHKEALLDRILADAEYRQVIIFTATRADTDRLTEKLNQSN 270
Query: 294 FLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDY 353
A L G+L+Q RN + R KILV TDVA+RG+D+PA+THV N+D+PK E+Y
Sbjct: 271 LKAVALSGNLNQTQRNTIMGQFERAVFKILVTTDVASRGLDIPAVTHVINFDMPKHTEEY 330
Query: 354 VHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPK 403
VHR+GRTGRAG G A+SLV + + K++E F +Q+I EV+ G E K
Sbjct: 331 VHRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFLQQEIQFEVLAGLEGK 380
>gi|417818816|ref|ZP_12465436.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE39]
gi|423938872|ref|ZP_17732357.1| type III restriction enzyme, res subunit [Vibrio cholerae HE-40]
gi|423968690|ref|ZP_17735907.1| type III restriction enzyme, res subunit [Vibrio cholerae HE-46]
gi|340043530|gb|EGR04488.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE39]
gi|408664653|gb|EKL35483.1| type III restriction enzyme, res subunit [Vibrio cholerae HE-40]
gi|408667254|gb|EKL38004.1| type III restriction enzyme, res subunit [Vibrio cholerae HE-46]
Length = 448
Score = 306 bits (785), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 172/410 (41%), Positives = 238/410 (58%), Gaps = 37/410 (9%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M FK +GL +LK L + + T +Q+QAIP I+GRDL+ SS+TGSGKT AF+LP L
Sbjct: 1 MQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
HK +K F PR L+L PTRELA QV Y
Sbjct: 61 HKSLKTKA------------------------FSAKDPRGLILVPTRELAKQV------Y 90
Query: 121 GLYMKKIKAIS-----ILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQI 175
G + +S I GG + Q++ L+R P ++ATPGRL DH++ + L+
Sbjct: 91 GELRSMLGGLSYTATLITGGENFNDQVKALARGPRFIVATPGRLADHLDHRSLFLEGLET 150
Query: 176 LVLDEADRMLDMGFINDIEKIVDATP-VTRQTMLFSATLD-GIVGNMAENITKDPLILKV 233
LVLDEADRMLD+GF ++ +I +A RQT++FSATLD V +MA + +P + +
Sbjct: 151 LVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMFSATLDHADVNDMAMELLNEPKRIAI 210
Query: 234 NSIEKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISG 293
++ K+ITQ D + HK LLD +L D Q ++FTAT+ D D + ++LN S
Sbjct: 211 GVGSEEHKDITQHFYLCDHLDHKEALLDRILADAEYRQVIIFTATRADTDRLTEKLNQSN 270
Query: 294 FLAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDY 353
A L G+L+Q RN + R KILV TDVA+RG+D+PA+THV N+D+PK E+Y
Sbjct: 271 LKAVALSGNLNQTQRNTIMGQFERAVFKILVTTDVASRGLDIPAVTHVINFDMPKHTEEY 330
Query: 354 VHRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPK 403
VHR+GRTGRAG G A+SLV + + K++E F +Q+I EV+ G E K
Sbjct: 331 VHRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFLQQEIQFEVLAGLEGK 380
>gi|354593920|ref|ZP_09011963.1| ATP-dependent RNA helicase [Commensalibacter intestini A911]
gi|353673031|gb|EHD14727.1| ATP-dependent RNA helicase [Commensalibacter intestini A911]
Length = 476
Score = 306 bits (785), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 164/399 (41%), Positives = 238/399 (59%), Gaps = 27/399 (6%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F +GL +++A+ ++GY PT +Q QAIP + +DL+ +QTG+GKTA+F LP L
Sbjct: 35 FSDLGLCAPIMRAIDEIGYKTPTQIQAQAIPVILQKQDLVGIAQTGTGKTASFTLPILEI 94
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
S+K R R PR L+L PTRELA+QV ++YG
Sbjct: 95 LTSTKG---------------------RARM----PRALILEPTRELAIQVADNLKQYGQ 129
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
Y+K A+ ++GG + Q +L+R +I++ATPGRL+D + G I + ++ILV+DEAD
Sbjct: 130 YLKLSHAL-LMGGESIVEQKDILNRGVDIIIATPGRLMDLFDKGAILLNQIKILVIDEAD 188
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLDMGFI D+E+I+ P TRQT+L SAT+ + + ++ +P + V
Sbjct: 189 RMLDMGFIPDVERIISFLPKTRQTLLLSATMSPEIKKLTDSFLSNPTEITVAPPSSVATT 248
Query: 243 ITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHGD 302
I ++ V + K L LLR++ V A++F K+D DI+ LN GF ++ LHGD
Sbjct: 249 IESGLIIVPE-KRKRATLRQLLRNEGVKNAIIFCNRKKDVDILTRSLNRHGFQSSALHGD 307
Query: 303 LHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGR 362
L Q R +T+E + G I+ LV +D+AARGIDV ++HVFN+DLP+ EDYVHRIGRTGR
Sbjct: 308 LTQQHRTKTMEEFKNGEIQFLVCSDIAARGIDVDHLSHVFNFDLPRQAEDYVHRIGRTGR 367
Query: 363 AGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFE 401
AGR GFA SL ++ I+ IE ++ IP+ +N E
Sbjct: 368 AGRTGFAYSLATEDDKETIEAIEALIQKPIPLLSLNKHE 406
>gi|424868021|ref|ZP_18291789.1| Putative ATP-dependent RNA helicase [Leptospirillum sp. Group II
'C75']
gi|206603692|gb|EDZ40172.1| Putative ATP-dependent RNA helicase [Leptospirillum sp. Group II
'5-way CG']
gi|387221616|gb|EIJ76157.1| Putative ATP-dependent RNA helicase [Leptospirillum sp. Group II
'C75']
Length = 444
Score = 306 bits (785), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 167/395 (42%), Positives = 237/395 (60%), Gaps = 28/395 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F+++GL +L+AL +G+ PT +Q+Q+IP I GRDL+ +QTG+GKT F+LP L
Sbjct: 1 MTFEALGLSPEILRALNDLGHASPTPIQKQSIPHVIDGRDLLGIAQTGTGKTGGFLLPVL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
HK A R + R LVL+PTRELA Q+ A + Y
Sbjct: 61 HKIAEG-------------------------RRHGIRNRALVLSPTRELATQIHQAAKDY 95
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+ A+ ++GG+ ++RQ + L RN +I++ATPGRL+DH+ + ++ ++++DE
Sbjct: 96 AKYLH-TNAVLLVGGVDFIRQERNLKRNWDIVVATPGRLLDHVRRNNLTLANTSLVIIDE 154
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF+ DI IV P RQ++LFSAT + +A D +I++V K
Sbjct: 155 ADRMLDMGFLPDINTIVRQLPKGRQSLLFSATCPPRIQELAATFQNDAVIVRVEPERKGS 214
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKR--VGQAVVFTATKRDADIIADRLNISGFLAAP 298
+I Q + V K LL +L + + GQ ++FT TKR A+ ++ LN +G+ +
Sbjct: 215 DHIHQEWITVSHGSQKLGLLKKVLDEGKSETGQVIIFTRTKRSAEDLSIALNDAGYPSDA 274
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
LHGD Q RNR L RRG +K+LVATDVAARG+D+ ITHV NYDLP+ EDYVHRIG
Sbjct: 275 LHGDKSQPVRNRVLSRFRRGDLKVLVATDVAARGLDIDGITHVINYDLPQTAEDYVHRIG 334
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIP 393
RTGRAGR G A+S + A+R ++ IE + IP
Sbjct: 335 RTGRAGRTGRALSFFHPADRDIVRSIETMAGKPIP 369
>gi|153215146|ref|ZP_01949844.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 1587]
gi|124114870|gb|EAY33690.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 1587]
Length = 464
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 167/406 (41%), Positives = 238/406 (58%), Gaps = 26/406 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S+GL +LKA+ + GY P+ +Q QAIPA ++G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
A + + Q R L+LTPTRELA Q+ Y
Sbjct: 61 ELLAKGP------------------------KVRAYQVRALILTPTRELAAQIQDNVMLY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +K+ + GG+ QMQ + + +IL+ATPGRL+D N + F L+ILVLDE
Sbjct: 97 GRHLP-LKSAVVFGGVKINPQMQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ +LFSAT + +A+ + +P+ + V+
Sbjct: 156 ADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I + D+ K +L L+++ Q +VF TK A+ +A LN G AA +H
Sbjct: 216 RTVEQCI-YPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G ++ILVATD+AARGID+P + V N++LPK EDYVHRIGRT
Sbjct: 275 GNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRI 406
GRAG G A+SLV+ E + IER T+ +P + GFEP ++
Sbjct: 335 GRAGEVGKAISLVSAIEAPELFAIERLTQALLPRVNLAGFEPTNQL 380
>gi|251790108|ref|YP_003004829.1| DEAD/DEAH box helicase domain-containing protein [Dickeya zeae
Ech1591]
gi|247538729|gb|ACT07350.1| DEAD/DEAH box helicase domain protein [Dickeya zeae Ech1591]
Length = 455
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 174/408 (42%), Positives = 244/408 (59%), Gaps = 24/408 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+S+GL +L+A+ + GY +PT VQ QAIP + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFESLGLSADILRAVEEQGYREPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
N+ PV+ K +P R L+LTPTRELA Q+ Y
Sbjct: 61 QLL----NERPVLAKG----------------RRPV--RALILTPTRELAAQIGENVLAY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y++ ++++ + GG+ QM L +IL+ATPGRL+D + ++ S + ILVLDE
Sbjct: 99 SKYLR-LRSLVVFGGVSINPQMMKLRGGVDILIATPGRLLDLEHQNAVDLSQVDILVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI +++ P RQ +LFSAT + +A + +P ++V
Sbjct: 158 ADRMLDMGFIHDIRRVLAKLPPKRQNLLFSATFSDEIKELAGKLLTNPASVEVVRRNTPS 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ +TQ + FVD K LL +L+ Q +VFT TK A+ +A++LN G AA +H
Sbjct: 218 ELVTQHVHFVDKK-RKRELLSHLIGKHDWRQVLVFTRTKHGANHLAEQLNKDGITAAAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L N + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHRIGRT
Sbjct: 277 GNKSQGARTRALANFKDGDIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
GRA G A+SLV E ++ IER K++IP I G+EP I+
Sbjct: 337 GRAASTGEALSLVCVDEHKLLRDIERLLKREIPRIAIPGYEPDPTIKA 384
>gi|83310527|ref|YP_420791.1| superfamily II DNA/RNA helicase [Magnetospirillum magneticum AMB-1]
gi|82945368|dbj|BAE50232.1| Superfamily II DNA and RNA helicase [Magnetospirillum magneticum
AMB-1]
Length = 476
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 175/394 (44%), Positives = 240/394 (60%), Gaps = 27/394 (6%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F +GL E +LKAL GYT PT +QEQ+IP + G D++ +QTG+GKTA+F LP L +
Sbjct: 5 FSELGLAEPLLKALEAEGYTTPTPIQEQSIPHLLQGSDVLGLAQTGTGKTASFALPLLQR 64
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
K R P R+LVLTPTRELA+QV + + YG
Sbjct: 65 LDQFKK-----------------------RAMPKSCRILVLTPTRELAVQVGQSFKTYGC 101
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
+ + A+ + GG+ + Q++ ++ ++L+ATPGRL+D + G I ++ LVLDEAD
Sbjct: 102 HYRLRHAL-VFGGVGMVPQIKTMAGGVDVLVATPGRLLDLIEQGAIRLDSVEALVLDEAD 160
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATL-DGIVGNMAENITKDPLILKVNSIEKKQK 241
RMLDMGFI I KIV P RQT+LFSAT+ D IVG +A ++ P+ ++V +
Sbjct: 161 RMLDMGFIQPIRKIVALVPKQRQTVLFSATMPDSIVG-LANSVLHTPVRVEVTPVSSTVD 219
Query: 242 NITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLHG 301
I Q +LFVD HK LL +L K VG+A+VFT TK A+ + + L +G A +HG
Sbjct: 220 KIDQKVLFVDR-EHKRTLLTDILAGKDVGRALVFTRTKHGANRVVELLEKAGIDADAIHG 278
Query: 302 DLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTG 361
+ Q AR + L + R GRIK LVATD+AARGIDV ITHV N++LP PE YVHRIGRT
Sbjct: 279 NKSQGARQKALADFRDGRIKALVATDIAARGIDVDGITHVINFELPNEPESYVHRIGRTA 338
Query: 362 RAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIE 395
RAG +G A+SL + E ++ IE+ +Q IP++
Sbjct: 339 RAGASGIALSLCDGDEVAYLRDIEKTIRQAIPVD 372
>gi|417711406|ref|ZP_12360409.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-272]
gi|417716231|ref|ZP_12365163.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-227]
gi|417826857|ref|ZP_12473430.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella flexneri J1713]
gi|420319296|ref|ZP_14821149.1| ATP-dependent RNA helicase rhlE [Shigella flexneri 2850-71]
gi|333009786|gb|EGK29235.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-272]
gi|333020451|gb|EGK39714.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-227]
gi|335576625|gb|EGM62870.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella flexneri J1713]
gi|391253484|gb|EIQ12657.1| ATP-dependent RNA helicase rhlE [Shigella flexneri 2850-71]
Length = 454
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 241/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITRQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASDQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
+HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 VAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|239624536|ref|ZP_04667567.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
bacterium 1_7_47_FAA]
gi|239520922|gb|EEQ60788.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
bacterium 1_7_47FAA]
Length = 518
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 173/394 (43%), Positives = 239/394 (60%), Gaps = 24/394 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
MNF + L L+LKAL + GY KP+ +QEQAIP ++G+DL+ +QTG+GKTAAF LP +
Sbjct: 1 MNFDELQLSPLLLKALDQKGYIKPSPIQEQAIPYVLNGQDLLGCAQTGTGKTAAFALPII 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
N + K R + KP R L+LTPTRELALQ+ E Y
Sbjct: 61 Q--------------------NLMERPKNRQKKKPV--RALILTPTRELALQIHENIEEY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G I + I GG+ Q+Q L R +IL+ATPGRL+D + +I+ S ++I VLDE
Sbjct: 99 GAGTP-INSAVIFGGVSAKPQIQSLRRGIDILVATPGRLLDLIGQHEIDLSFVEIFVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+D+++++ P RQT+LFSAT+ + +A + +P+ ++V +
Sbjct: 158 ADRMLDMGFIHDVKRVITLLPKKRQTLLFSATMPDEIQALAAKLLHNPVKVEVTPVSSTV 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
I S+ +VD +K LL +LL + V +VFT TK AD A LN SG AA +H
Sbjct: 218 DLIETSLYYVDKA-NKWPLLVHLLEHEDVSSTLVFTRTKHGADRGAKYLNKSGITAAAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
GD Q AR L N + GR+++LVATD+AARGID+ ++ V N+DLP PE YVHRIGRT
Sbjct: 277 GDKSQGARQTALSNFKSGRLRVLVATDIAARGIDIEELSCVINFDLPNVPETYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPI 394
GRAG G A+S + E+ +K IE+ T + I +
Sbjct: 337 GRAGLGGRAISFSDIEEKAYVKDIEKLTGKTIQV 370
>gi|427721123|ref|YP_007069117.1| DEAD/DEAH box helicase [Calothrix sp. PCC 7507]
gi|427353559|gb|AFY36283.1| DEAD/DEAH box helicase domain protein [Calothrix sp. PCC 7507]
Length = 438
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 166/401 (41%), Positives = 242/401 (60%), Gaps = 24/401 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F ++GL +++A+ ++GYTKPT +Q+QAIP +SG DL+ +QTG+GKTA+F LP L
Sbjct: 1 MSFSNLGLSNEIIRAVTELGYTKPTPIQKQAIPVILSGGDLLAGAQTGTGKTASFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQP-RMLVLTPTRELALQVTAATER 119
H+ ++ +K N P P R L+LTPTRELA QV ++
Sbjct: 61 HRLSNDS-----VKSTSN----------------PYPPIRALILTPTRELAAQVESSVRE 99
Query: 120 YGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLD 179
YG Y+ + +++ GG+ Q +LL +IL+ATPGRL+DH+ G +N SH+++LVLD
Sbjct: 100 YGKYLN-LNTMAMFGGVSINPQKRLLKGRVDILVATPGRLLDHVQQGTVNLSHVEVLVLD 158
Query: 180 EADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKK 239
EADRMLDMGFI DI +I+ P RQ +LF AT + +A + P +++V
Sbjct: 159 EADRMLDMGFIRDIRRILSLLPKQRQNLLFFATFSDKIKALATGLLNHPKMIEVARRNVT 218
Query: 240 QKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+ Q + V+ K +LL +L+R Q +VFT TK AD + +L A +
Sbjct: 219 ADTVAQKVYKVERD-RKCQLLAHLIRKDNWYQVLVFTRTKYGADRLVKQLTQERIQALAI 277
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
HG+ Q+AR L + G +++LVATD+AARG+D+ + HV N+DLP DYVHRIGR
Sbjct: 278 HGNKSQSARTHALAKFKNGSLQVLVATDIAARGLDISELPHVVNFDLPNVASDYVHRIGR 337
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGF 400
TGRAG +G AVSLV E + +IE+ +Q++P EV+ GF
Sbjct: 338 TGRAGASGEAVSLVCVDEYQLLTEIEKLIEQRLPFEVVAGF 378
>gi|258624900|ref|ZP_05719828.1| ATP-dependent RNA helicase [Vibrio mimicus VM603]
gi|258582898|gb|EEW07719.1| ATP-dependent RNA helicase [Vibrio mimicus VM603]
Length = 451
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 170/402 (42%), Positives = 239/402 (59%), Gaps = 26/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M F S+GL +LKA+ + GY P+ +Q QAIPA ++G+D++ ++QTG+GKTA F LP L
Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
A K P ++ N Q R L+LTPTRELA Q+ Y
Sbjct: 61 ELLA----KGPRVRAN--------------------QVRALILTPTRELAAQIQDNVLIY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G ++ +K+ + GG+ QMQ + + ++L+ATPGRL+D N I F L+ILVLDE
Sbjct: 97 GRHLP-LKSAVVFGGVKINPQMQRMCKGADVLVATPGRLMDLYNQNAIKFDQLEILVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DI KI+ P RQ +LFSAT + +A+ + +P+ + V+
Sbjct: 156 ADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTA 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ + Q I + D+ K +L L+++ Q +VF TK A+ +A LN G AA +H
Sbjct: 216 RTVEQCI-YPADVKKKPAMLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G ++ILVATD+AARGID+P + V N++LPK EDYVHRIGRT
Sbjct: 275 GNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG G A+SLV+ E + IER T+ +P + GFEP
Sbjct: 335 GRAGEVGKAISLVSAIEAPELFAIERLTQALLPRINLAGFEP 376
>gi|423139268|ref|ZP_17126906.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
gi|379051822|gb|EHY69713.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
Length = 453
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 242/412 (58%), Gaps = 32/412 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL+ +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFAS----SKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAA 116
+ +K + PV R L+LTPTRELA Q+
Sbjct: 61 QHLITQQPHAKGRRPV--------------------------RALILTPTRELAAQIGEN 94
Query: 117 TERYGLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQIL 176
Y Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++IL
Sbjct: 95 VRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEIL 153
Query: 177 VLDEADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSI 236
VLDEADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213
Query: 237 EKKQKNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLA 296
+ +TQ + FVD K LL ++ Q +VFT TK A+ +A++LN G +
Sbjct: 214 NTASEQVTQHVHFVDK-KRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272
Query: 297 APLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHR 356
A +HG+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 357 IGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
IGRTGRA G A+SLV E ++ IE+ K++IP G+EP I+
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTPGYEPDPSIKA 384
>gi|325284979|ref|YP_004260769.1| DEAD/DEAH box helicase [Cellulophaga lytica DSM 7489]
gi|324320433|gb|ADY27898.1| DEAD/DEAH box helicase domain protein [Cellulophaga lytica DSM
7489]
Length = 429
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 162/402 (40%), Positives = 243/402 (60%), Gaps = 26/402 (6%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M FK++GL +LKA+ K GYT P+ +QE+AIP + G+D++ S+QTG+GKTA F LP L
Sbjct: 1 MTFKNLGLSNNLLKAIDKKGYTTPSPIQEKAIPPVLEGKDVLASAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
H + + ++ LR +P R L+LTPTRELA Q+ A + Y
Sbjct: 61 H----------------------LLSEQKALRHRPV--RALILTPTRELAAQIFANVKEY 96
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
++ +++ I GG+ Q+ L R ++L+ATPGRL+D N ++ ++I VLDE
Sbjct: 97 SEFLD-LRSAVIFGGVNQKPQIANLKRGMDVLVATPGRLLDLHNQRFLSLDKVEIFVLDE 155
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF+ DIE+++ P RQ ++FSAT + +A I +P+ ++
Sbjct: 156 ADRMLDMGFLRDIERVMKLIPAKRQNLMFSATFSKDIKKLAHGILNNPIQVEATPENTAV 215
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+ I Q + V K L+ L+ D Q +VFT TK A+ + +++ G AA +H
Sbjct: 216 EVIKQKVYRVAK-GKKTGLIIKLISDGNWQQVLVFTRTKHGANNLCKKMSSKGISAAAIH 274
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR + L+ ++G +++LVATD+AARG+D+P + HV NY++P EDYVHRIGRT
Sbjct: 275 GNKSQGARTKALDGFKKGTLRVLVATDIAARGLDIPLLPHVINYEIPNISEDYVHRIGRT 334
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEP 402
GRAG +G AVSLV+ E +K I++ QIP+E++ GFEP
Sbjct: 335 GRAGASGEAVSLVSADETTYLKDIQKLIGMQIPVEIVEGFEP 376
>gi|254476293|ref|ZP_05089679.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. R11]
gi|214030536|gb|EEB71371.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. R11]
Length = 501
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 164/399 (41%), Positives = 236/399 (59%), Gaps = 34/399 (8%)
Query: 3 FKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPALHK 62
F + L+ VLKA+ + GY PT +Q AIP A+ GRD++ +QTG+GKTA+F LP +
Sbjct: 4 FSDLNLNPKVLKAIEEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITL 63
Query: 63 FASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERYGL 122
A R R + PR LVL PTRELA QV + Y
Sbjct: 64 LA-------------------------RGRARARMPRSLVLCPTRELAAQVAENFDTYTK 98
Query: 123 YMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDEAD 182
++ KA+ ++GG+ + Q L+ + ++L+ATPGRL+DH GK+ S ++++V+DEAD
Sbjct: 99 HLNLTKAL-LIGGVSFKEQDALIDKGVDVLIATPGRLLDHFERGKLILSDVKVMVVDEAD 157
Query: 183 RMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQKN 242
RMLDMGFI DIE+I TP TRQT+ FSAT+ + + P ++V +N
Sbjct: 158 RMLDMGFIPDIERIFGLTPFTRQTLFFSATMAPEIERITNTFLSAPERIEVARQATTSEN 217
Query: 243 ITQSILFVD------DILHKNRLLDYLL--RDKRVGQAVVFTATKRDADIIADRLNISGF 294
ITQ ++ + K +LL +L+ ++ A++F K D DI A L G+
Sbjct: 218 ITQGVVLFKASRRDREGSEKRKLLRHLIDQEGEKCTNAIIFCNRKTDVDICAKSLKKYGY 277
Query: 295 LAAPLHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYV 354
AAP+HGDL Q+ R +TL+ R G ++ LVA+DVAARG+DVP ++HVFN+D+P EDYV
Sbjct: 278 NAAPIHGDLDQSQRMKTLDEFREGNLRFLVASDVAARGLDVPTVSHVFNFDVPSHAEDYV 337
Query: 355 HRIGRTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIP 393
HRIGRTGRAGR+G A+ + + N++ IER +Q+IP
Sbjct: 338 HRIGRTGRAGRDGTAMMICVPKDEKNLEDIERLVQQEIP 376
>gi|338974689|ref|ZP_08630047.1| ATP-dependent RNA helicase [Bradyrhizobiaceae bacterium SG-6C]
gi|338232284|gb|EGP07416.1| ATP-dependent RNA helicase [Bradyrhizobiaceae bacterium SG-6C]
Length = 469
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 165/394 (41%), Positives = 241/394 (61%), Gaps = 28/394 (7%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F ++GL + VL A+ GYT PT +QEQAIP +S RD++ +QTG+GKTAAF LP
Sbjct: 1 MSFSNLGLSDKVLAAVAATGYTTPTPIQEQAIPHVLSRRDVLGIAQTGTGKTAAFTLP-- 58
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ T E+ R + PR L+L PTRELA QV ++Y
Sbjct: 59 -----------------------MITLLEKGRARALMPRTLILEPTRELAAQVKENFDKY 95
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
G +K+ ++GG+ + Q LSR ++L+ATPGRL+DH GK+ + +++LV+DE
Sbjct: 96 G-AGQKLNVALLIGGVSFGDQDLKLSRGVDVLIATPGRLLDHTERGKLLLTGIEVLVIDE 154
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI DIE+I P TRQT+ F+AT+ + + E +P+ ++V+
Sbjct: 155 ADRMLDMGFIPDIERICKLVPFTRQTLFFTATMPSEIRRITETFLHNPVKVEVSKPASTA 214
Query: 241 KNITQSILFVDDILHKNR-LLDYLLRD-KRVGQAVVFTATKRDADIIADRLNISGFLAAP 298
+TQ + H+ R +L LLRD K + A++F KRD ++ L GF
Sbjct: 215 VTVTQFHVNTGREPHEKREMLRQLLRDAKDLKNAIIFCNRKRDVAVVYKSLQKHGFSVGA 274
Query: 299 LHGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIG 358
LHGD+ Q+AR +L+ R+G + +LVA+DVAARG+D+P ++HVFN+D+P P+DYVHRIG
Sbjct: 275 LHGDMDQSARTASLDQFRKGELPLLVASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRIG 334
Query: 359 RTGRAGRNGFAVSLVNHAERMNIKKIERFTKQQI 392
RTGRAGR G A+S+V+ A++ ++ IE+ Q I
Sbjct: 335 RTGRAGRLGTAISIVSPADQKSLVAIEKLIGQPI 368
>gi|419231381|ref|ZP_13774170.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9B]
gi|378081545|gb|EHW43497.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9B]
Length = 454
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 168/408 (41%), Positives = 241/408 (59%), Gaps = 24/408 (5%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F S+GL +L+A+ + GY +PT +Q+QAIPA + GRDL+ S+QTG+GKTA F LP L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ + H + R R L+LTPTRELA Q+ Y
Sbjct: 61 QHLITRQ------------------PHAKGRR----SVRALILTPTRELAAQIGENVRDY 98
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
Y+ I+++ + GG+ QM L ++L+ATPGRL+D + + ++ILVLDE
Sbjct: 99 SKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDE 157
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGFI+DI +++ P RQ +LFSAT + +AE + +PL ++V
Sbjct: 158 ADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTAS 217
Query: 241 KNITQSILFVDDILHKNRLLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPLH 300
+TQ + FVD K LL +++ Q +VFT TK A+ +A++LN G +A +H
Sbjct: 218 DQVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIH 276
Query: 301 GDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 360
G+ Q AR R L + + G I++LVATD+AARG+D+ + HV NY+LP PEDYVHRIGRT
Sbjct: 277 GNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRT 336
Query: 361 GRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRT 408
GRA G A+SLV E ++ IE+ K++IP I G+EP I+
Sbjct: 337 GRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA 384
>gi|54308937|ref|YP_129957.1| ATP-dependent RNA helicase [Photobacterium profundum SS9]
gi|46913367|emb|CAG20155.1| putative ATP-dependent RNA helicase, DEAD boxfamily [Photobacterium
profundum SS9]
Length = 422
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 172/433 (39%), Positives = 255/433 (58%), Gaps = 21/433 (4%)
Query: 1 MNFKSIGLHELVLKALVKVGYTKPTGVQEQAIPAAISGRDLIVSSQTGSGKTAAFMLPAL 60
M+F+++GL+ ++ + ++G+ PT +QEQAIP ++G D++ +QTG+GKTAAF LP +
Sbjct: 1 MSFQALGLNTQLVDTVTELGFKTPTPIQEQAIPQVLAGDDIMAGAQTGTGKTAAFGLPMI 60
Query: 61 HKFASSKNKIPVMKKNLNQNNNKIYTHKERLRFKPAQPRMLVLTPTRELALQVTAATERY 120
+ +S+ H E KP R LVLTPTRELA QV + Y
Sbjct: 61 QRLLASQQS----------------EHDEGYIKKPEAIRALVLTPTRELAQQVHDSILAY 104
Query: 121 GLYMKKIKAISILGGMPYLRQMQLLSRNPEILLATPGRLIDHMNSGKINFSHLQILVLDE 180
IK GG Q++ L +IL+ATPGRL+DH +G ++ S ++ LVLDE
Sbjct: 105 S-KNTSIKVAVAYGGTSMGVQVKALKSGVDILIATPGRLLDHAFTGTVDLSKIECLVLDE 163
Query: 181 ADRMLDMGFINDIEKIVDATPVTRQTMLFSATLDGIVGNMAENITKDPLILKVNSIEKKQ 240
ADRMLDMGF+ DI++I+ P RQT+LFSAT V +A +I DP +++V
Sbjct: 164 ADRMLDMGFVVDIKRIMQRMPRKRQTLLFSATFSNQVKKLAYDILADPKLIEVTPENITA 223
Query: 241 KNITQSILFVDDILHKNR-LLDYLLRDKRVGQAVVFTATKRDADIIADRLNISGFLAAPL 299
+++TQ + VD H+ R LL YL+ + Q ++FT TK+ +D +A L + G A +
Sbjct: 224 ESVTQMVYPVDK--HRKRELLSYLIGSRNWNQVLIFTKTKQGSDELAKELILDGIKAVSI 281
Query: 300 HGDLHQNARNRTLENLRRGRIKILVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 359
+GD Q AR R L + + G+++ +VATDVAARG+D+ + +V N+DLP EDYVHRIGR
Sbjct: 282 NGDKSQGARQRALSDFKEGKVRAMVATDVAARGLDIEQLGYVVNFDLPFQAEDYVHRIGR 341
Query: 360 TGRAGRNGFAVSLVNHAERMNIKKIERFTKQQIPIEVINGFEPKKRIRTYYSRYRFNNNN 419
TGRAG G A+SL++ E ++ IE ++P E + G+EP I+ +R R ++ +
Sbjct: 342 TGRAGLTGSAISLMSIDEEWALRAIEELLDTRLPQEWLEGYEPDPTIKAQDNR-RSSSTS 400
Query: 420 WKTHNINKSNITK 432
K KS I K
Sbjct: 401 EKRRIKAKSKIHK 413
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.136 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,609,259,882
Number of Sequences: 23463169
Number of extensions: 270813926
Number of successful extensions: 973584
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 38450
Number of HSP's successfully gapped in prelim test: 8496
Number of HSP's that attempted gapping in prelim test: 835248
Number of HSP's gapped (non-prelim): 69981
length of query: 453
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 307
effective length of database: 8,933,572,693
effective search space: 2742606816751
effective search space used: 2742606816751
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 79 (35.0 bits)