BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy9403
         (737 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1VPB|A Chain A, Crystal Structure Of A Putative Modulator Of Dna Gyrase
           (Bt3649) From Bacteroides Thetaiotaomicron Vpi-5482 At
           1.75 A Resolution
          Length = 451

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 145/358 (40%), Gaps = 23/358 (6%)

Query: 350 NAVKSTRSIANQSNGXXXXXXXXXXXXXXSLYSFTDTISSINIREKIKLLERVEKIARLK 409
           N + STR +A                    L  +    +S+N  +KI++ + V + A  K
Sbjct: 96  NGIDSTRYLAKDEARVLADPSRYYKGGKPDLKLYDAKFASLNPDDKIEMAKAVAEEALGK 155

Query: 410 DPRVIKVIANLSGEYDVILITRNDGLIVADIRPLVQLFVTIIVEKNGRREIGNSGCGGRY 469
           D R+I V ++     D      ++G           L   I +   G            Y
Sbjct: 156 DERIISVGSSYGDGEDFAYRLISNGFEGETKSTWYSLSADITIRGEGEARPS------AY 209

Query: 470 NYN---YFTDMILEKCVSNSVNSALINLEAKPAPAGIMKVVLGPGWPGILLHEAIGHGLE 526
            Y    Y  D+I +     ++   L  L  K   +G   +V+ P     LL   I   L 
Sbjct: 210 WYESSLYMNDLIKKGIGQKALERVLRKLGQKKVQSGKYTMVVDPMNSSRLLSPMI-SALN 268

Query: 527 GDFNRKGSSAFSNCIGKRIASKEITIVDNGTLANRRGSINIDDEGNPTQCTTLIENGILK 586
           G   ++ +S   N + ++IAS  +T+ D   L    G+   D+EG  T+  ++ + G+L 
Sbjct: 269 GSALQQKNSFLLNKLNEKIASDRLTLTDEPHLVKASGARYFDNEGIATERRSIFDKGVLN 328

Query: 587 GYMQDIMNARLMNMSITGNARRESFAHIPIPRMTNTYMLNGKFHPEEIISSVKNGLYATN 646
            Y  D  NA+ M +  T            I   +   M  G  + + +I+ V+ G+  T 
Sbjct: 329 TYFIDTYNAKKMGVDPT------------ISGSSILVMETGDKNLDGLIAGVEKGILVTG 376

Query: 647 FSGGQVDITNGKFVFSASKAYIIKNGKITYPVKGATLIGHGPNILKKVSMIGNDMKLD 704
           F+GG  + + G F +   + ++I+NGK+T PV    + G+   +   +   GND +L+
Sbjct: 377 FNGGNNNSSTGDFSYGI-EGFLIENGKLTQPVSEMNVTGNLITLWNSLVATGNDPRLN 433


>pdb|1VL4|A Chain A, Crystal Structure Of A Putative Modulator Of A Dna Gyrase
           (Tm0727) From Thermotoga Maritima Msb8 At 1.95 A
           Resolution
 pdb|1VL4|B Chain B, Crystal Structure Of A Putative Modulator Of A Dna Gyrase
           (Tm0727) From Thermotoga Maritima Msb8 At 1.95 A
           Resolution
          Length = 447

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 89/175 (50%), Gaps = 9/175 (5%)

Query: 531 RKGSSAFSNCIGKRIASKEITIVDNGTLANRRGSINIDDEGNPTQCTTLIENGILKGYMQ 590
           +K  S     +G+++ +  ++I D         S   DDEG PT    ++ENG+LK ++ 
Sbjct: 261 QKNLSPLKGKLGEQVGNPAVSIKDLPYHPKGLSSTPFDDEGVPTTEKFVLENGVLKTFLH 320

Query: 591 DIMNARLMNMSITGNARRESFAHIPIPRMTNTYMLNGKFHPEEIISSVKNGLYATNFSG- 649
           ++  AR   +  TGN        +   R  N  ++ G+   EE++  +  G+  T   G 
Sbjct: 321 NLKTARKEGVEPTGN------GFVGGIRPVNLMLMPGEKSFEELLKEMDRGVVITEVEGM 374

Query: 650 -GQVDITNGKFVFSASKAYIIKNGKITYPVKGATLIGHGPNILKKVSMIGNDMKL 703
               +  +G+F   A K Y ++NG+I + V+  T+ G+  ++L+K+ ++GND+K+
Sbjct: 375 HAGANSISGEFSLFA-KGYWVENGEIAHGVEDITISGNFLDLLRKIVLVGNDVKV 428


>pdb|3TV9|A Chain A, Crystal Structure Of Putative Peptide Maturation Protein
           From Shigella Flexneri
          Length = 457

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 129/312 (41%), Gaps = 20/312 (6%)

Query: 394 EKIKLLERVEKIARLKDPRVIKVIA-NLSGEYDVILITRNDGLIVADIRPLVQLFVTIIV 452
           E I+L  R E+ A   D R+      + +  Y V +   + G +         LF  +I 
Sbjct: 146 EAIELAARAEQAALQADKRITNTEGGSFNSHYGVKVFGNSHGXLQGYCSTRHSLFSCVIA 205

Query: 453 EKNGRREIGNSGCGGRYNYNYFT-DMILEKCVSNSVNS-ALINLEAKPAPAGIMKVVLGP 510
           E+NG  E   +   GR   +  T + +   C   +++  +   L    AP  I    +  
Sbjct: 206 EENGDXERDYAYTIGRAXSDLQTPEWVGADCARRTLSRLSPRKLSTXKAPV-IFANEVAT 264

Query: 511 GWPGILLHEAIGHGLEGDFNRKGSSAFSNCIGKRIASKEITIVDNGTLANRRGSINIDDE 570
           G  G L+    G    G   RK S+   + +GK+I    +TI ++  L     S   D E
Sbjct: 265 GLFGHLVGAIAG----GSVYRK-STFLLDSLGKQILPDWLTIEEHPHLLKGLASTPFDSE 319

Query: 571 GNPTQCTTLIENGILKGYMQDIMNARLMNMSITGNARRESFAHIPIPRMTNTYMLNGKFH 630
           G  T+   +I++GIL  ++    +AR + +  TG+A            + N  +      
Sbjct: 320 GVRTERRDIIKDGILTQWLLTSYSARKLGLKSTGHA----------GGIHNWRIAGQGLS 369

Query: 631 PEEIISSVKNGLYATNFSGGQVDITNGKFVFSASKAYIIKNGKITYPVKGATLIGHGPNI 690
            E+ +     GL  T   G  V    G +   A+  + ++NG+I YPV   T+ G+  + 
Sbjct: 370 FEQXLKEXGTGLVVTELXGQGVSAITGDYSRGAA-GFWVENGEIQYPVSEITIAGNLKDX 428

Query: 691 LKKVSMIGNDMK 702
            + +  +GND++
Sbjct: 429 WRNIVTVGNDIE 440


>pdb|3QTD|A Chain A, Crystal Structure Of Putative Modulator Of Gyrase (Pmba)
           From Pseudomonas Aeruginosa Pao1
 pdb|3QTD|B Chain B, Crystal Structure Of Putative Modulator Of Gyrase (Pmba)
           From Pseudomonas Aeruginosa Pao1
 pdb|3QTD|C Chain C, Crystal Structure Of Putative Modulator Of Gyrase (Pmba)
           From Pseudomonas Aeruginosa Pao1
 pdb|3QTD|D Chain D, Crystal Structure Of Putative Modulator Of Gyrase (Pmba)
           From Pseudomonas Aeruginosa Pao1
          Length = 449

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 92/209 (44%), Gaps = 12/209 (5%)

Query: 494 LEAKPAPAGIMKVVLGPGWPGILLHEAIGHGLEGDFNRKGSSAFSNCIGKRIASKEITIV 553
           L A+P     + V+  P     L    +G    G   RK SS     +G+R+  + ++I 
Sbjct: 233 LGARPVQTAEVPVLFAPEIAVGLFGHFLGAISGGSLYRK-SSFLEGALGQRLFPEWLSID 291

Query: 554 DNGTLANRRGSINIDDEGNPTQCTTLIENGILKGYMQDIMNARLMNMSITGNARRESFAH 613
           +   L    GS + D +G  T     +ENG L  Y+    + R + +  T NA       
Sbjct: 292 ERPHLVGALGSASFDSDGLATYAKPFVENGELVSYVLGTYSGRKLGLPSTANA------- 344

Query: 614 IPIPRMTNTYMLNGKFHPEEIISSVKNGLYATNFSGGQVDITNGKFVFSASKAYIIKNGK 673
                + N ++ +G      +I   + GL  T   G  V++  G +   A+  Y ++NG+
Sbjct: 345 ---GGVHNLFVSHGDEDQAALIRRXERGLLVTELXGQGVNLVTGDYSRGAA-GYWVENGE 400

Query: 674 ITYPVKGATLIGHGPNILKKVSMIGNDMK 702
           I +PV+  T+  +  ++ +++  +G D++
Sbjct: 401 IQFPVQEVTIAANLRDLFRRIVAVGKDIE 429


>pdb|3GBR|A Chain A, Anthranilate Phosphoribosyl-Transferase (Trpd) Double
           Mutant D83g F149s From S. Solfataricus
 pdb|3GBR|B Chain B, Anthranilate Phosphoribosyl-Transferase (Trpd) Double
           Mutant D83g F149s From S. Solfataricus
          Length = 345

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 84/192 (43%), Gaps = 14/192 (7%)

Query: 1   MRIKGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKK 60
           +R+KGES  EI GF  A+  L I +++P    A     +  G    +NV    A+LLS  
Sbjct: 45  LRMKGESKNEIVGFARAMRELAIKIDVP---NAIDTAGTGGGGLGTVNVSTASAILLSLV 101

Query: 61  GIPVFIHGIKKNFGRITTYEILKKLGYFAVSSXXXXXXXXXXXXXVFMDISILIPELSKL 120
             PV  HG +   G+  + ++L+ LGY  +               VF+      P +  +
Sbjct: 102 N-PVAKHGNRAVSGKSGSADVLEALGYNIIVPPERAKELVNKTNFVFLSAQYYHPAMKNV 160

Query: 121 LEIYYMLGIRNSSHLLVKIIQPLSIPA---LRLVSYTHPEYLKILSDYFYNEKSLGDIFL 177
             +   LGIR     +  I+ PL+ PA    +L+     ++L +LS   Y E     I L
Sbjct: 161 ANVRKTLGIRT----IFNILGPLTNPANAKYQLMGVFSKDHLDLLSKSAY-ELDFNKIIL 215

Query: 178 MQGTEG--EVIP 187
           + G  G  EV P
Sbjct: 216 VYGEPGIDEVSP 227


>pdb|1O17|A Chain A, Anthranilate Phosphoribosyl-Transferase (Trpd)
 pdb|1O17|B Chain B, Anthranilate Phosphoribosyl-Transferase (Trpd)
 pdb|1O17|C Chain C, Anthranilate Phosphoribosyl-Transferase (Trpd)
 pdb|1O17|D Chain D, Anthranilate Phosphoribosyl-Transferase (Trpd)
 pdb|1GXB|A Chain A, Anthranilate Phosphoribosyltransferase In Complex With
           Pyrophosphate And Magnesium
 pdb|1GXB|B Chain B, Anthranilate Phosphoribosyltransferase In Complex With
           Pyrophosphate And Magnesium
 pdb|1GXB|C Chain C, Anthranilate Phosphoribosyltransferase In Complex With
           Pyrophosphate And Magnesium
 pdb|1GXB|D Chain D, Anthranilate Phosphoribosyltransferase In Complex With
           Pyrophosphate And Magnesium
 pdb|1ZXY|A Chain A, Anthranilate Phosphoribosyltransferase From Sulfolobus
           Solfataricus In Complex With Prpp And Magnesium
 pdb|1ZXY|B Chain B, Anthranilate Phosphoribosyltransferase From Sulfolobus
           Solfataricus In Complex With Prpp And Magnesium
 pdb|1ZXY|C Chain C, Anthranilate Phosphoribosyltransferase From Sulfolobus
           Solfataricus In Complex With Prpp And Magnesium
 pdb|1ZXY|D Chain D, Anthranilate Phosphoribosyltransferase From Sulfolobus
           Solfataricus In Complex With Prpp And Magnesium
 pdb|1ZYK|A Chain A, Anthranilate Phosphoribosyltransferase In Complex With
           Prpp, Anthranilate And Magnesium
 pdb|1ZYK|B Chain B, Anthranilate Phosphoribosyltransferase In Complex With
           Prpp, Anthranilate And Magnesium
 pdb|1ZYK|C Chain C, Anthranilate Phosphoribosyltransferase In Complex With
           Prpp, Anthranilate And Magnesium
 pdb|1ZYK|D Chain D, Anthranilate Phosphoribosyltransferase In Complex With
           Prpp, Anthranilate And Magnesium
 pdb|2GVQ|A Chain A, Anthranilate Phosphoribosyl-Transferase (Trpd) From S.
           Solfataricus In Complex With Anthranilate
 pdb|2GVQ|B Chain B, Anthranilate Phosphoribosyl-Transferase (Trpd) From S.
           Solfataricus In Complex With Anthranilate
 pdb|2GVQ|C Chain C, Anthranilate Phosphoribosyl-Transferase (Trpd) From S.
           Solfataricus In Complex With Anthranilate
 pdb|2GVQ|D Chain D, Anthranilate Phosphoribosyl-Transferase (Trpd) From S.
           Solfataricus In Complex With Anthranilate
          Length = 345

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 85/194 (43%), Gaps = 18/194 (9%)

Query: 1   MRIKGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRF--MNVIPLLALLLS 58
           +R+KGES  EI GF  A+  L I +++P +     I  +  G      +NV    A+LLS
Sbjct: 45  LRMKGESKNEIVGFARAMRELAIKIDVPNA-----IDTAGTGGDGLGTVNVSTASAILLS 99

Query: 59  KKGIPVFIHGIKKNFGRITTYEILKKLGYFAVSSXXXXXXXXXXXXXVFMDISILIPELS 118
               PV  HG +   G+  + ++L+ LGY  +               VF+      P + 
Sbjct: 100 LVN-PVAKHGNRAVSGKSGSADVLEALGYNIIVPPERAKELVNKTNFVFLFAQYYHPAMK 158

Query: 119 KLLEIYYMLGIRNSSHLLVKIIQPLSIPA---LRLVSYTHPEYLKILSDYFYNEKSLGDI 175
            +  +   LGIR     +  I+ PL+ PA    +L+     ++L +LS   Y E     I
Sbjct: 159 NVANVRKTLGIRT----IFNILGPLTNPANAKYQLMGVFSKDHLDLLSKSAY-ELDFNKI 213

Query: 176 FLMQGTEG--EVIP 187
            L+ G  G  EV P
Sbjct: 214 ILVYGEPGIDEVSP 227


>pdb|1VQU|A Chain A, Crystal Structure Of Anthranilate
           Phosphoribosyltransferase 2 (17130499) From Nostoc Sp.
           At 1.85 A Resolution
 pdb|1VQU|B Chain B, Crystal Structure Of Anthranilate
           Phosphoribosyltransferase 2 (17130499) From Nostoc Sp.
           At 1.85 A Resolution
          Length = 374

 Score = 32.3 bits (72), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 71/178 (39%), Gaps = 12/178 (6%)

Query: 1   MRIKGESVEEISGFLNAINSLFIP------LEIPISKYAPIIIPSY----NGSRRFMNVI 50
           +  KG S +E++G    + S           ++PI+     II +     +GS  F N+ 
Sbjct: 69  LNFKGVSADELTGXAEVLQSQSKXGTGENYSQLPITNSPFSIIDTCGTGGDGSSTF-NIS 127

Query: 51  PLLALLLSKKGIPVFIHGIKKNFGRITTYEILKKLGYFAVSSXXXXXXXXXXXXXVFMDI 110
             +A + +  G+PV  HG +       + ++L+ LG    +S              F+  
Sbjct: 128 TAVAFVAAAYGVPVAKHGNRSASSLTGSADVLEALGVNLGASPEKVQAALQEVGITFLFA 187

Query: 111 SILIPELSKLLEIYYMLGIRNSSHLLVKIIQPLSIPALRLVSYTHPEYLKILSDYFYN 168
               P L  +  +   L IR   +LL  ++ PL  P  ++V    P+ L  ++    N
Sbjct: 188 PGWHPALKAVATLRRTLRIRTVFNLLGPLVNPLR-PTGQVVGLFTPKLLTTVAQALDN 244


>pdb|4E3W|A Chain A, Crystal Structure Francisella Tularensis Histidine Acid
           Phosphatase Cryoprotected With Proline
 pdb|4E3W|B Chain B, Crystal Structure Francisella Tularensis Histidine Acid
           Phosphatase Cryoprotected With Proline
          Length = 342

 Score = 30.4 bits (67), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 10/61 (16%)

Query: 140 IQPLSIPAL----RLVSYTHPEYLKILSDYFYNEKSLGDIFLMQGTEGEVIPNICNSKQI 195
            QP+ I  L    RL+ + + +YL +L  Y YN          Q    E  PN    +QI
Sbjct: 116 FQPIPIMTLSADSRLIQFPYEQYLAVLKKYVYNSPE------WQNKTKEAAPNFAKWQQI 169

Query: 196 I 196
           +
Sbjct: 170 L 170


>pdb|3IT3|A Chain A, Crystal Structure Francisella Tularensis Histidine Acid
           Phosphatase D261a Mutant Complexed With Substrate 3'-Amp
 pdb|3IT3|B Chain B, Crystal Structure Francisella Tularensis Histidine Acid
           Phosphatase D261a Mutant Complexed With Substrate 3'-Amp
          Length = 342

 Score = 30.4 bits (67), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 10/61 (16%)

Query: 140 IQPLSIPAL----RLVSYTHPEYLKILSDYFYNEKSLGDIFLMQGTEGEVIPNICNSKQI 195
            QP+ I  L    RL+ + + +YL +L  Y YN          Q    E  PN    +QI
Sbjct: 116 FQPIPIMTLSADSRLIQFPYEQYLAVLKKYVYNSPE------WQNKTKEAAPNFAKWQQI 169

Query: 196 I 196
           +
Sbjct: 170 L 170


>pdb|3IT0|A Chain A, Crystal Structure Francisella Tularensis Histidine Acid
           Phosphatase Complexed With Phosphate
 pdb|3IT0|B Chain B, Crystal Structure Francisella Tularensis Histidine Acid
           Phosphatase Complexed With Phosphate
 pdb|3IT1|A Chain A, Crystal Structure Francisella Tularensis Histidine Acid
           Phosphatase Complexed With L(+)-Tartrate
 pdb|3IT1|B Chain B, Crystal Structure Francisella Tularensis Histidine Acid
           Phosphatase Complexed With L(+)-Tartrate
 pdb|3IT2|A Chain A, Crystal Structure Of Ligand-Free Francisella Tularensis
           Histidine Acid Phosphatase
 pdb|3IT2|B Chain B, Crystal Structure Of Ligand-Free Francisella Tularensis
           Histidine Acid Phosphatase
          Length = 342

 Score = 30.4 bits (67), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 10/61 (16%)

Query: 140 IQPLSIPAL----RLVSYTHPEYLKILSDYFYNEKSLGDIFLMQGTEGEVIPNICNSKQI 195
            QP+ I  L    RL+ + + +YL +L  Y YN          Q    E  PN    +QI
Sbjct: 116 FQPIPIMTLSADSRLIQFPYEQYLAVLKKYVYNSPE------WQNKTKEAAPNFAKWQQI 169

Query: 196 I 196
           +
Sbjct: 170 L 170


>pdb|3QB0|A Chain A, Crystal Structure Of Actin-Related Protein Arp4 From S.
           Cerevisiae Complexed With Atp
 pdb|3QB0|B Chain B, Crystal Structure Of Actin-Related Protein Arp4 From S.
           Cerevisiae Complexed With Atp
 pdb|3QB0|C Chain C, Crystal Structure Of Actin-Related Protein Arp4 From S.
           Cerevisiae Complexed With Atp
 pdb|3QB0|D Chain D, Crystal Structure Of Actin-Related Protein Arp4 From S.
           Cerevisiae Complexed With Atp
          Length = 498

 Score = 29.6 bits (65), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 134 HLLVKIIQPLSIPALRLVSYTHPEYLKILSDYFYNEKSLGDIFLMQG---TEGEVIPNIC 190
           HL+ K ++P  I  L  +    PE++K   DY  + KSL D    +G      E + +IC
Sbjct: 201 HLIKKALEPKEIIPLFAIKQRKPEFIKKTFDYEVD-KSLYDYANNRGFFQECKETLCHIC 259

Query: 191 NSKQIIHWFHDNKYTKLTKEQNKEISFPKNSNI 223
            +K +     +   T+L+    + I  P N  I
Sbjct: 260 PTKTL-----EETKTELSSTAKRSIESPWNEEI 287


>pdb|3H09|A Chain A, The Structure Of Haemophilus Influenzae Iga1 Protease
 pdb|3H09|B Chain B, The Structure Of Haemophilus Influenzae Iga1 Protease
          Length = 989

 Score = 29.6 bits (65), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 71/176 (40%), Gaps = 23/176 (13%)

Query: 551 TIVDNGTLANRRGSINIDDEGNPTQCTTLIENGILKGYMQDIMNARLMNMSITGNARRES 610
           T++D  T  +  GS N     NPT  T++I NG       + +N  L + S   ++++ +
Sbjct: 307 TVLDKDTAGSLTGS-NTQYNWNPTGKTSVISNG------SESLNVDLFDSSQDTDSKKNN 359

Query: 611 FAHIPIPRMTNTYMLNGKFHPE------EIISSVKNGLYATNFSGGQVDITNGKFV---- 660
                  R + T  LN            E    VK    +T + G  V + +GK V    
Sbjct: 360 HGKSVTLRGSGTLTLNNNIDQGAGGLFFEGDYEVKGTSDSTTWKGAGVSVADGKTVTWKV 419

Query: 661 FSASKAYIIKNGKITYPV------KGATLIGHGPNILKKVSMIGNDMKLDPGVGVC 710
            +     + K GK T  V      KG+  +G G  ILK+ +   N +K    VG+ 
Sbjct: 420 HNPKSDRLAKIGKGTLIVEGKGENKGSLKVGDGTVILKQQADANNKVKAFSQVGIV 475


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.139    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,391,487
Number of Sequences: 62578
Number of extensions: 920287
Number of successful extensions: 2267
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2251
Number of HSP's gapped (non-prelim): 17
length of query: 737
length of database: 14,973,337
effective HSP length: 106
effective length of query: 631
effective length of database: 8,340,069
effective search space: 5262583539
effective search space used: 5262583539
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)