Query psy9403
Match_columns 737
No_of_seqs 343 out of 2457
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 18:18:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9403.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9403hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10735 tldD protease TldD; P 100.0 8.8E-94 1.9E-98 804.8 56.1 464 270-736 11-480 (481)
2 COG0312 TldD Predicted Zn-depe 100.0 2.9E-80 6.4E-85 698.2 48.2 446 278-736 3-454 (454)
3 PRK11040 peptidase PmbA; Provi 100.0 1.4E-78 3E-83 678.8 48.0 425 277-736 15-446 (446)
4 COG0547 TrpD Anthranilate phos 100.0 8.1E-68 1.7E-72 559.8 26.2 277 1-286 46-335 (338)
5 PRK07394 hypothetical protein; 100.0 1.2E-62 2.5E-67 529.4 26.1 257 1-260 51-316 (342)
6 PRK08136 glycosyl transferase 100.0 5E-61 1.1E-65 509.2 27.1 255 1-260 49-310 (317)
7 PLN02641 anthranilate phosphor 100.0 4.4E-61 9.5E-66 515.5 24.5 253 1-260 45-305 (343)
8 PRK09522 bifunctional glutamin 100.0 5.5E-59 1.2E-63 527.0 22.7 249 1-257 242-501 (531)
9 TIGR01245 trpD anthranilate ph 100.0 4.8E-58 1E-62 493.9 24.5 256 1-260 39-303 (330)
10 PRK14607 bifunctional glutamin 100.0 3.1E-58 6.7E-63 525.0 23.9 278 1-286 237-527 (534)
11 PRK00188 trpD anthranilate pho 100.0 2.5E-57 5.3E-62 490.5 27.9 255 1-260 45-307 (339)
12 PRK09071 hypothetical protein; 100.0 6E-56 1.3E-60 472.7 25.0 250 1-260 50-303 (323)
13 PF00591 Glycos_transf_3: Glyc 100.0 4.3E-52 9.2E-57 433.7 10.6 225 31-260 2-234 (252)
14 PF01523 PmbA_TldD: Putative m 100.0 2.2E-47 4.7E-52 407.9 37.0 291 293-588 1-293 (293)
15 KOG1438|consensus 100.0 6.7E-50 1.4E-54 395.5 13.6 246 6-258 67-339 (373)
16 PRK06078 pyrimidine-nucleoside 100.0 9.5E-35 2.1E-39 317.0 18.6 250 1-293 45-319 (434)
17 TIGR02644 Y_phosphoryl pyrimid 100.0 3E-30 6.5E-35 280.0 14.9 248 1-293 43-317 (405)
18 PRK04350 thymidine phosphoryla 100.0 1.1E-29 2.3E-34 279.8 17.5 251 1-293 123-395 (490)
19 PRK05820 deoA thymidine phosph 99.9 2.8E-24 6.1E-29 235.4 12.9 125 1-129 46-176 (440)
20 TIGR02645 ARCH_P_rylase putati 99.9 2.7E-23 5.8E-28 229.0 14.3 127 1-131 128-256 (493)
21 TIGR02643 T_phosphoryl thymidi 99.9 6.3E-23 1.4E-27 223.5 9.4 122 1-126 45-172 (437)
22 TIGR03327 AMP_phos AMP phospho 99.9 8.4E-22 1.8E-26 217.2 12.7 127 1-131 129-257 (500)
23 COG0213 DeoA Thymidine phospho 97.7 6.6E-05 1.4E-09 81.3 7.2 125 3-131 48-177 (435)
24 PF02885 Glycos_trans_3N: Glyc 96.4 0.0013 2.7E-08 54.1 0.9 22 1-22 44-65 (66)
25 KOG3220|consensus 55.1 10 0.00022 38.2 2.8 76 72-164 11-97 (225)
26 cd08627 PI-PLCc_gamma1 Catalyt 52.3 21 0.00046 36.7 4.7 55 3-86 26-80 (229)
27 PRK09071 hypothetical protein; 51.1 7.5 0.00016 42.3 1.3 71 76-148 96-190 (323)
28 cd08633 PI-PLCc_eta2 Catalytic 49.2 25 0.00054 36.8 4.6 55 3-86 26-80 (254)
29 cd08594 PI-PLCc_eta Catalytic 48.8 25 0.00055 36.1 4.6 55 3-86 26-80 (227)
30 cd08631 PI-PLCc_delta4 Catalyt 47.7 26 0.00056 36.8 4.5 55 3-86 26-80 (258)
31 cd08599 PI-PLCc_plant Catalyti 47.7 27 0.00059 36.0 4.7 54 4-86 27-80 (228)
32 cd08596 PI-PLCc_epsilon Cataly 46.1 29 0.00063 36.3 4.6 55 3-86 26-80 (254)
33 cd08632 PI-PLCc_eta1 Catalytic 44.9 31 0.00067 36.0 4.6 55 3-86 26-80 (253)
34 PF13344 Hydrolase_6: Haloacid 43.7 12 0.00026 33.2 1.3 69 33-102 3-76 (101)
35 cd08593 PI-PLCc_delta Catalyti 42.4 36 0.00077 35.8 4.6 55 3-86 26-80 (257)
36 cd08629 PI-PLCc_delta1 Catalyt 42.2 37 0.00079 35.6 4.7 55 3-86 26-80 (258)
37 cd08598 PI-PLC1c_yeast Catalyt 41.7 35 0.00077 35.2 4.4 54 4-86 27-80 (231)
38 cd08630 PI-PLCc_delta3 Catalyt 40.5 37 0.00081 35.6 4.4 55 3-86 26-80 (258)
39 cd08591 PI-PLCc_beta Catalytic 40.0 43 0.00094 35.1 4.8 57 3-86 26-82 (257)
40 cd08628 PI-PLCc_gamma2 Catalyt 38.1 42 0.0009 35.2 4.3 55 3-86 26-80 (254)
41 cd08558 PI-PLCc_eukaryota Cata 35.1 50 0.0011 34.0 4.3 48 12-86 33-80 (226)
42 TIGR01245 trpD anthranilate ph 34.9 13 0.00029 40.5 0.1 72 77-148 90-182 (330)
43 PRK08136 glycosyl transferase 34.4 21 0.00046 38.7 1.6 70 77-146 100-190 (317)
44 cd08592 PI-PLCc_gamma Catalyti 32.2 66 0.0014 33.2 4.6 48 12-86 33-80 (229)
45 PRK10444 UMP phosphatase; Prov 31.6 85 0.0018 32.7 5.5 71 32-103 5-80 (248)
46 cd08625 PI-PLCc_beta3 Catalyti 30.5 75 0.0016 33.5 4.8 57 3-86 26-82 (258)
47 cd08623 PI-PLCc_beta1 Catalyti 29.8 82 0.0018 33.1 4.9 57 3-86 26-82 (258)
48 PRK11889 flhF flagellar biosyn 27.7 2.5E+02 0.0055 31.7 8.5 92 31-127 242-346 (436)
49 PF13486 Dehalogenase: Reducti 27.2 44 0.00096 36.1 2.5 29 206-236 125-153 (308)
50 PRK12726 flagellar biosynthesi 26.9 3E+02 0.0066 30.9 8.9 81 31-116 207-299 (407)
51 PRK12724 flagellar biosynthesi 26.8 4.1E+02 0.009 30.2 10.0 133 32-179 225-368 (432)
52 cd08626 PI-PLCc_beta4 Catalyti 25.8 91 0.002 32.8 4.4 56 4-86 27-82 (257)
53 cd08597 PI-PLCc_PRIP_metazoa C 25.8 90 0.0019 32.9 4.4 48 12-86 33-80 (260)
54 PRK05703 flhF flagellar biosyn 25.6 2.8E+02 0.0061 31.4 8.7 93 31-126 222-324 (424)
55 COG0563 Adk Adenylate kinase a 25.5 1.1E+02 0.0025 30.1 4.9 91 34-130 4-106 (178)
56 TIGR01457 HAD-SF-IIA-hyp2 HAD- 25.4 1.8E+02 0.0039 30.2 6.7 70 32-103 5-80 (249)
57 cd08595 PI-PLCc_zeta Catalytic 24.9 95 0.0021 32.6 4.3 54 4-86 27-80 (257)
58 TIGR01458 HAD-SF-IIA-hyp3 HAD- 22.0 1.4E+02 0.0031 31.1 5.1 74 32-105 5-86 (257)
59 PLN02641 anthranilate phosphor 21.7 36 0.00077 37.4 0.5 70 77-148 94-186 (343)
60 COG4815 Uncharacterized protei 21.3 73 0.0016 29.5 2.3 45 564-608 67-113 (145)
No 1
>PRK10735 tldD protease TldD; Provisional
Probab=100.00 E-value=8.8e-94 Score=804.76 Aligned_cols=464 Identities=56% Similarity=0.974 Sum_probs=428.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhCCCCEEEEEEEEEEEEEEEEECCeeeEeEEEEEeeEEEEEEECCeEEEEEcCCCCHHHHH
Q psy9403 270 LEPFDLDEKILLKILGNMFKNKVDYADFYFQFTKNENWILEEGIVKTGNFSINQGVGVRAISGDKTAFFYSDDISKNTLI 349 (737)
Q Consensus 270 ~~~~~~~~~~~~~il~~a~~~g~~~~ei~~~~~~~~~i~~~~~~l~~~~~~~~~gigvRv~~~gr~G~a~t~~l~~~~l~ 349 (737)
++.|+++++.+.++++++++.|+|++|||++++++.++.+++++|+..+.+.+.|+||||+++|++||++|+++++++|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~g~d~~Ev~~~~~~~~si~~~~g~ve~~~~~~~~GigvRVi~~g~~Gfast~dl~~~~l~ 90 (481)
T PRK10735 11 LAANGLNHQDLFAILGQLAERRLDYGDLYFQSSYHESWVLEDRIIKDGSYNIDQGVGVRAISGEKTGFAYADQISLLALE 90 (481)
T ss_pred hcccCCCHHHHHHHHHHHHHcCCCEEEEEEEEeeeEEEEEECCEeeEEEecCcceEEEEEEECCcEEEEEeCCCCHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccC-CCccccccccccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCCEEEEEEEEEEEEEEEE
Q psy9403 350 NAVKSTRSIANQSN-GKIKIIKNIKKIKINSLYSFTDTISSINIREKIKLLERVEKIARLKDPRVIKVIANLSGEYDVIL 428 (737)
Q Consensus 350 ~ai~~A~~~A~~~~-~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~e~~e~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 428 (737)
+++++|.++|+..+ +++..+.. ......|+..+++.++++++++++++++++.+++++++|..+.+.|+....++.
T Consensus 91 ~av~~A~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ekie~~~~~e~~~~~~d~~I~~v~~~~~~~~~~~~ 167 (481)
T PRK10735 91 QSAQAARTIVRDSGDGKVQTLGA---VEHSPLYTSLDPLQSMSREEKLDILRRVDKVARAADKRVQEVTASLTGVYELIL 167 (481)
T ss_pred HHHHHHHHHhhhccCCccccccc---ccccccccccCCcccCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEE
Confidence 99999999999765 44332321 111122333334457899999999999999999989999998889999999999
Q ss_pred EEEcCCCeeEEeeeEEEEEEEEEEEeCCeeeeecccccccccccccc-----cccHHHHHHHHHHHHHHhcCCCCCCCee
Q psy9403 429 ITRNDGLIVADIRPLVQLFVTIIVEKNGRREIGNSGCGGRYNYNYFT-----DMILEKCVSNSVNSALINLEAKPAPAGI 503 (737)
Q Consensus 429 i~nS~G~~~~~~~~~~~~~~~~~a~~g~~~~~~~~~~~~r~~~~~l~-----~~d~~~~~~~a~~~a~~~l~a~~i~~g~ 503 (737)
|+||+|+.++++.+.+++++++++++++.+++++...+.+.+|++.. +.++++++++|+++|+.+|+++++++|+
T Consensus 168 i~nS~G~~~~~~~~~~~~~~~~va~~~g~~~~~~~~~~~~~g~e~~~~~~~~~l~~e~i~~~a~~~a~~~l~a~~i~~g~ 247 (481)
T PRK10735 168 VAATDGTLAADVRPLVRLSVSVLVEEDGKRERGASGGGGRFGYEYFLADLDGEVRADAWAKEAVRMALVNLSAVAAPAGT 247 (481)
T ss_pred EEeCCCCEEEEEeeEEEEEEEEEEEcCCEEEeeeccCCccCCchHhhcccccccCHHHHHHHHHHHHHHhcCCccCCCce
Confidence 99999999999999999999999998888877555555555665321 2278999999999999999999999999
Q ss_pred EEEEeCCchHHHHHHHHHhhccccchhhcCCCccccccCccccCCceEEEEcCCCCCCCCCccccCCCccccceeEEeCc
Q psy9403 504 MKVVLGPGWPGILLHEAIGHGLEGDFNRKGSSAFSNCIGKRIASKEITIVDNGTLANRRGSINIDDEGNPTQCTTLIENG 583 (737)
Q Consensus 504 y~Vil~p~a~~~ll~~~~~~~~~a~~v~~g~S~l~~klG~~v~s~~lti~DDP~~~~~~gs~~fDdEGv~t~~~~LIe~G 583 (737)
|||||+|.+++.|+|++++|+|+|+++++|+|+|++|+|++|+|+.|||+|||++++++|+++|||||+|+|++.|||||
T Consensus 248 y~VIl~p~~~~~ll~~~~~~~~~~d~~~~g~S~l~~klG~~vas~~lti~Ddp~~~~~~gs~~fDdEGv~t~~~~lI~~G 327 (481)
T PRK10735 248 MPVVLGAGWPGVLLHEAVGHGLEGDFNRRGTSVFSGQVGELVASELCTVVDDGTMVDRRGSVAIDDEGTPGQYNVLIENG 327 (481)
T ss_pred eeEEECCcHHHHHHHHHhhhhhchhhHhhCCchhhhcCCCeeCCCccEEEECCCCCCCCcCCCcCCCCCCccccEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eechhhccHHHHHhcCCCCCccccccCcCCCCcCCceeEEEcCCCCChhHHHHcccCeEEEEecCCCccccccceEEEEe
Q psy9403 584 ILKGYMQDIMNARLMNMSITGNARRESFAHIPIPRMTNTYMLNGKFHPEEIISSVKNGLYATNFSGGQVDITNGKFVFSA 663 (737)
Q Consensus 584 vLk~~l~d~~tA~k~g~~~TGna~r~~~~~~P~~~~~Nl~i~~g~~s~eeli~~~~~Gl~V~~~~g~~~np~sGdFS~~~ 663 (737)
||++||||+|||+++|++|||||+|.+|.++|.|+|+|++|+||+.+++|||+++++||||++++|+++||+||+||+++
T Consensus 328 vL~~~l~d~~tA~~~g~~sTGna~r~~~~~~p~~~~~N~~i~~g~~s~~eli~~~~~Gl~v~~~~g~~~n~~sGdFs~~~ 407 (481)
T PRK10735 328 ILKGYMQDKLNARLMGVAPTGNGRRESYAHLPMPRMTNTYMLAGKSTPQEIIESVEYGIYAPNFGGGQVDITSGKFVFST 407 (481)
T ss_pred EEechhhhhHHHHHcCCCCCCCcccccCCCCCcCccceEEEeCCCCCHHHHHHhcCCEEEEEcCcCcccCCCceEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeCCeeeccccceEEEecHHHHHhhchhccCcceecCCCccccCCCcceecccccceEEEeceEEecC
Q psy9403 664 SKAYIIKNGKITYPVKGATLIGHGPNILKKVSMIGNDMKLDPGVGVCGKDGQMVPVGVGQPTLKIDSITVGGT 736 (737)
Q Consensus 664 ~~g~~IenG~i~~pV~~~~isGn~~~~L~~I~~vg~d~~~~~~~~~cgk~~q~~~~~~~~Psi~v~~~~V~G~ 736 (737)
..||+|||||+++||+++||+||++++|++|++||+|++|..+.++|||++|.+||++++|+|+|++|+|+|.
T Consensus 408 ~~g~~IenGei~~pV~~~~i~Gn~~~~L~~I~~vg~d~~~~~~~g~Cgk~~q~v~v~~g~P~i~v~~i~VgG~ 480 (481)
T PRK10735 408 SEAYLIENGKVTKPVKGATLIGSGIEAMQQISMVGNDLKLDNGVGVCGKEGQSLPVGVGQPTLKVDNLTVGGT 480 (481)
T ss_pred EEEEEEECCEEcceeeeEEEEecHHHHHHhhhhccccceeccCCCccCCCCcccccccCCCCEEEccEEEccC
Confidence 8899999999999999999999999999999999999999766789999999999999999999999999996
No 2
>COG0312 TldD Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only]
Probab=100.00 E-value=2.9e-80 Score=698.18 Aligned_cols=446 Identities=41% Similarity=0.643 Sum_probs=404.2
Q ss_pred HHHHHHHHHHhhCCCCEEEEEEEEEEEEEEEEECCeeeEeEEEEEeeEEEEEEECCeEEEEEcCCCCHHHHHHHHHHHHH
Q psy9403 278 KILLKILGNMFKNKVDYADFYFQFTKNENWILEEGIVKTGNFSINQGVGVRAISGDKTAFFYSDDISKNTLINAVKSTRS 357 (737)
Q Consensus 278 ~~~~~il~~a~~~g~~~~ei~~~~~~~~~i~~~~~~l~~~~~~~~~gigvRv~~~gr~G~a~t~~l~~~~l~~ai~~A~~ 357 (737)
+.++++++.+++.|++++||+++++++.++.++++++++.+.+.+.|++|||++++++||++|+++++ .+++++++|..
T Consensus 3 ~~~~~~l~~~~~~~a~~~ei~~~~~~~~~v~~~~~~v~~~~~~~~~g~~vRv~~~~~~~~a~t~~~~~-~~~~~v~~A~~ 81 (454)
T COG0312 3 ELLEKLLELALKAGADEAEVRVERSSGESVSLRNGEVETVSFSIDRGVGVRVIKGGGWGFASTNDLSE-ALEAAVEAALK 81 (454)
T ss_pred hHHHHHHHHHHhcCCCeEEEEEEEeeeeEEEEECCEEeeccccccccEEEEEEECCeEEEEEcCCCCH-HHHHHHHHHHH
Confidence 66889999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HhcccC-CCcccc-ccccccccCCCCCCC--CCCCCCCHHHHHHHHHHHHHHHhccCCCEEEEEEEEEEEEEEEEEEEcC
Q psy9403 358 IANQSN-GKIKII-KNIKKIKINSLYSFT--DTISSINIREKIKLLERVEKIARLKDPRVIKVIANLSGEYDVILITRND 433 (737)
Q Consensus 358 ~A~~~~-~~~~~~-~~~~~~~~~~~y~~~--~~~~~~~~~e~~e~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~nS~ 433 (737)
+|+..+ ++...+ +. +......|... ....+.+++++++++.++++.+++.+++|..+.++++....++.|+||+
T Consensus 82 ~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nS~ 159 (454)
T COG0312 82 IARLAGEDEEAGLAPP--EPLAPASYPDLDLKDPEDVSLEEKVELLKRAEAAARAADPRINSVSASYSDSVSEVVIANSE 159 (454)
T ss_pred HHhccccCCccccccc--cccccccccccccCCcccCCHHHHHHHHHHHHHHHhhccCcceeEEEEEEEEEEEEEEEEcC
Confidence 999864 322222 21 11111122211 1234678999999999999999999999977789999999999999999
Q ss_pred CCeeEEeeeEEEEEEEEEEEeCCeeeeeccccccccccccccccc-HHHHHHHHHHHHHHhcCCCCCCCeeEEEEeCCch
Q psy9403 434 GLIVADIRPLVQLFVTIIVEKNGRREIGNSGCGGRYNYNYFTDMI-LEKCVSNSVNSALINLEAKPAPAGIMKVVLGPGW 512 (737)
Q Consensus 434 G~~~~~~~~~~~~~~~~~a~~g~~~~~~~~~~~~r~~~~~l~~~d-~~~~~~~a~~~a~~~l~a~~i~~g~y~Vil~p~a 512 (737)
|..+++..+.+++++++++++++..+..++..+++.+++.+. + +++++++|+++|+.+++++++|+|+|||||+|.+
T Consensus 160 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~a~~~l~~~~~~~g~~~VIl~p~~ 237 (454)
T COG0312 160 GSEVEYERTRVSLSVSVIAGEGGRGEERSGRGGGSRGFEELL--EEPEEVAEEAARRALSLLEARPVPSGRYPVILSPEA 237 (454)
T ss_pred CcEEEEEeeeEEEEEEEEEEeCCceEEeeccCCCcCCHHHHH--HHHHHHHHHHHHHHHHhcCCCCCCCCcccEEECCCc
Confidence 999999999999999999998776666655555555666543 4 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccchhhcCCCc-cccccCccccCCceEEEEcCCCCCCCCCccccCCCccccceeEEeCceechhhcc
Q psy9403 513 PGILLHEAIGHGLEGDFNRKGSSA-FSNCIGKRIASKEITIVDNGTLANRRGSINIDDEGNPTQCTTLIENGILKGYMQD 591 (737)
Q Consensus 513 ~~~ll~~~~~~~~~a~~v~~g~S~-l~~klG~~v~s~~lti~DDP~~~~~~gs~~fDdEGv~t~~~~LIe~GvLk~~l~d 591 (737)
++.|+||+++|+++||++++|+|+ |.+++|+||+||.|||+|||++++++||++|||||+|+|++.|||||||++||||
T Consensus 238 ~~~llhea~gh~~e~d~v~~~~s~~~~~~~G~~v~se~lti~Ddp~~~~~~gs~~fDdEGv~t~~~~lIe~GvL~~yl~~ 317 (454)
T COG0312 238 AGVLLHEALGHALEGDRVYKGESSLLADKLGKRVASELLTIIDDPTLPGGLGSYPFDDEGVPTRRTVLIENGVLKGYLHD 317 (454)
T ss_pred hheeeehhhccchhhhhhhcccchHhhhhhhhhhcCceeEEEeCCCCCCCccCcccCCCCCccceeEEEEcCEEeehhcc
Confidence 999999999999999999999887 7999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCccccccCcCCCCcCCceeEEEcCCCCChhHHHHcccCeEEEEecCCCccccccceEEEEeceEEEEeC
Q psy9403 592 IMNARLMNMSITGNARRESFAHIPIPRMTNTYMLNGKFHPEEIISSVKNGLYATNFSGGQVDITNGKFVFSASKAYIIKN 671 (737)
Q Consensus 592 ~~tA~k~g~~~TGna~r~~~~~~P~~~~~Nl~i~~g~~s~eeli~~~~~Gl~V~~~~g~~~np~sGdFS~~~~~g~~Ien 671 (737)
+++|+++|++|||||+|.+|.+.|.+||+|++|+||+.|++|||+++++||||++++|++.|+.+|.|++.+..||||||
T Consensus 318 ~~sA~~~G~~~TGnar~~~~~~~p~~rm~N~~i~~G~~s~eeli~~~~~Giyv~~~~gg~~~~~~~~f~~~~~~gy~Ien 397 (454)
T COG0312 318 RYSARKLGLESTGNARRGSYAHVPIPRMTNTYIEPGDYSFEELIEDVKRGLYVTNLWGGQNDITGGFFRFSGAEGYLIEN 397 (454)
T ss_pred hhhHHHhCCCcCcccccccCCcCCccceecccccCCCCCHHHHHHhhCcEEEEecccCceeccCCceEEEEeeEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999998888888999998889999999
Q ss_pred CeeeccccceEEEecHHHHHhhchhccCcceecCCCccccCCCcceecccccceEEEeceEEecC
Q psy9403 672 GKITYPVKGATLIGHGPNILKKVSMIGNDMKLDPGVGVCGKDGQMVPVGVGQPTLKIDSITVGGT 736 (737)
Q Consensus 672 G~i~~pV~~~~isGn~~~~L~~I~~vg~d~~~~~~~~~cgk~~q~~~~~~~~Psi~v~~~~V~G~ 736 (737)
|||++||++++|+||++++|++|++||+|.++....+.|+| +++|+++|+++.|+|.
T Consensus 398 Gei~~pv~~~~i~gn~~e~l~~I~~vg~d~~~~~~~g~~gk--------~g~P~i~v~~~~v~G~ 454 (454)
T COG0312 398 GEITYPVKGITLSGNLLELLKNIVAVGKDLELDEGRGFCGK--------VGGPSIRVRGVIVAGG 454 (454)
T ss_pred CEEcccccccEEEEeHHHHHhhchhccccceeccCCccccC--------CCCccEEEeeeEecCC
Confidence 99999999999999999999999999999988754478997 6799999999999884
No 3
>PRK11040 peptidase PmbA; Provisional
Probab=100.00 E-value=1.4e-78 Score=678.76 Aligned_cols=425 Identities=20% Similarity=0.283 Sum_probs=382.2
Q ss_pred HHHHHHHHHHHhhCCCCEEEEEEEEEEEEEEEEECCeeeEeEEEEEeeEEEEEEECCeEEEEEcCCCCHHHHHHHHHHHH
Q psy9403 277 EKILLKILGNMFKNKVDYADFYFQFTKNENWILEEGIVKTGNFSINQGVGVRAISGDKTAFFYSDDISKNTLINAVKSTR 356 (737)
Q Consensus 277 ~~~~~~il~~a~~~g~~~~ei~~~~~~~~~i~~~~~~l~~~~~~~~~gigvRv~~~gr~G~a~t~~l~~~~l~~ai~~A~ 356 (737)
++.++++++.+++ |++++|||++++++.++.+++++|++++.+.+.|++|||++||||||+++++++++++++++++|.
T Consensus 15 ~~~~~~~~~~a~~-~~d~~Ei~~~~~~~~si~~~~g~l~~~~~~~~~gvgvRVi~~gk~Gfa~t~~l~~~~l~~av~~A~ 93 (446)
T PRK11040 15 EEAVSTALELASG-KSDGAEVAVSKTTGISVSTRYGEVENVEFNSDGALGITVYHQQRKGSASSTDLSPQAIARTVQAAL 93 (446)
T ss_pred HHHHHHHHHHHHh-CCCcEEEEEEEcCceEEEEECCccceEEeccCCCEEEEEEECCeEEEEEecCCCHHHHHHHHHHHH
Confidence 4568888888876 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccC-CCccccccccccc-----cCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCCEEEEE-EEEEEEEEEEEE
Q psy9403 357 SIANQSN-GKIKIIKNIKKIK-----INSLYSFTDTISSINIREKIKLLERVEKIARLKDPRVIKVI-ANLSGEYDVILI 429 (737)
Q Consensus 357 ~~A~~~~-~~~~~~~~~~~~~-----~~~~y~~~~~~~~~~~~e~~e~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~i 429 (737)
++|+..+ +++..++. .... ....|+ + .++++++++++++++++.+++++++|..+. +.++....++.|
T Consensus 94 ~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~d---~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i 168 (446)
T PRK11040 94 DIARYTSPDPCAGPAD-KELLAFDAPDLDLFH---P-AEVDPDEAIELAARAEQAALQADKRITNTEGGSFNSHYGIKVF 168 (446)
T ss_pred HHHhccCCCcccCCCC-hHHcccCCCcccccC---c-CCCCHHHHHHHHHHHHHHHHhcCCCeEeecCceEEeeEEEEEE
Confidence 9999876 44433221 0100 011121 2 367899999999999999998889998876 589999999999
Q ss_pred EEcCCCeeEEeeeEEEEEEEEEEEeCCeeeeecccccccccccccccccHHHHHHHHHHHHHHhcCCCCCCCeeEEEEeC
Q psy9403 430 TRNDGLIVADIRPLVQLFVTIIVEKNGRREIGNSGCGGRYNYNYFTDMILEKCVSNSVNSALINLEAKPAPAGIMKVVLG 509 (737)
Q Consensus 430 ~nS~G~~~~~~~~~~~~~~~~~a~~g~~~~~~~~~~~~r~~~~~l~~~d~~~~~~~a~~~a~~~l~a~~i~~g~y~Vil~ 509 (737)
+||+|++.+++.+.+++++++++++++..+++|++..++. ++.+. +++.++++|+++|..+|+++++++|+|||||+
T Consensus 169 ~NS~G~~~~~~~~~~~~~~~~~a~~~g~~~s~~~~~~~~~-~~~l~--~~~~~~~~a~~~a~~~l~a~~i~~g~~~Vi~~ 245 (446)
T PRK11040 169 GNSHGMLQSYCSSRHSLSSCVIAEENGDMERDYAYTIGRA-MDDLQ--TPEWVGAECARRTLSRLSPRKLSTMKAPVIFA 245 (446)
T ss_pred EeCCCcccccccccEEEEEEEEEEcCCceeccceeeeecC-hhhcC--CHHHHHHHHHHHHHHhcCCccCCCCeeeEEEC
Confidence 9999999999999999999999988888888887776664 44332 68899999999999999999999999999999
Q ss_pred CchHHHHHHHHHhhccccchhhcCCCccccccCccccCCceEEEEcCCCCCCCCCccccCCCccccceeEEeCceechhh
Q psy9403 510 PGWPGILLHEAIGHGLEGDFNRKGSSAFSNCIGKRIASKEITIVDNGTLANRRGSINIDDEGNPTQCTTLIENGILKGYM 589 (737)
Q Consensus 510 p~a~~~ll~~~~~~~~~a~~v~~g~S~l~~klG~~v~s~~lti~DDP~~~~~~gs~~fDdEGv~t~~~~LIe~GvLk~~l 589 (737)
|.+++.|++.++ .+|+++++++|+|+|++|+|++|+||.|||+|||+++++++|++|||||+|+|+++||||||||+||
T Consensus 246 p~~~~~ll~~~~-~~~~~~~v~~g~S~~~~klGe~v~s~~~ti~Ddp~~~~~~~s~~fDdEGv~~~~~~lIe~Gvlk~~l 324 (446)
T PRK11040 246 AEVATGLFGHLV-GAISGGSVYRKSTFLLDSLGKQILPEWLTIEEHPHLLKGLASTPFDSEGVRTERRDIIKDGVLQTWL 324 (446)
T ss_pred chHHHHHHHHHH-HhcCHHHHhcCCccccccCCCeecCCccEEEccCCCCCCCcCCCcCCCCCccCccEEEECCEEeeec
Confidence 999999998655 4799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHhcCCCCCccccccCcCCCCcCCceeEEEcCCCCChhHHHHcccCeEEEEecCCCccccccceEEEEeceEEEE
Q psy9403 590 QDIMNARLMNMSITGNARRESFAHIPIPRMTNTYMLNGKFHPEEIISSVKNGLYATNFSGGQVDITNGKFVFSASKAYII 669 (737)
Q Consensus 590 ~d~~tA~k~g~~~TGna~r~~~~~~P~~~~~Nl~i~~g~~s~eeli~~~~~Gl~V~~~~g~~~np~sGdFS~~~~~g~~I 669 (737)
||+|||+++|++|||||++ ++|++|+||+.|++|||+++++||||++++|+++|++||+||+++. ||||
T Consensus 325 ~~~~~A~~~g~~~TGna~~----------~~n~~i~~g~~s~~eli~~~~~Gi~v~~~~g~~~~~~tGdFs~~~~-g~~I 393 (446)
T PRK11040 325 LTSYSARKLGLKSTGHAGG----------IHNWRIAGQGLSFEQMLKEMGTGLVVTELMGQGVSAVTGDYSRGAA-GFWV 393 (446)
T ss_pred cCHHHHHHcCCCCCcCCCC----------cceEEECCCCCCHHHHHHhhCCEEEEEeccCCccCCCcccEEeeEe-EEEE
Confidence 9999999999999999963 4799999999999999999999999999999989999999999985 9999
Q ss_pred eCCeeeccccceEEEecHHHHHhhchhccCcceecCCCccccCCCcceecccccceEEEeceEEecC
Q psy9403 670 KNGKITYPVKGATLIGHGPNILKKVSMIGNDMKLDPGVGVCGKDGQMVPVGVGQPTLKIDSITVGGT 736 (737)
Q Consensus 670 enG~i~~pV~~~~isGn~~~~L~~I~~vg~d~~~~~~~~~cgk~~q~~~~~~~~Psi~v~~~~V~G~ 736 (737)
||||+++||+++||+||++++|++|++||+|.+|.++ ..+|+++|++++|+|+
T Consensus 394 enGei~~pv~~~~i~gn~~~~L~~i~~vg~~~~~~~~--------------~~~~~~~~~~~~V~G~ 446 (446)
T PRK11040 394 ENGEIQYPVSEITIAGNLKDMWRNIVTVGNDIETRSN--------------IQCGSVLLPEMKIAGQ 446 (446)
T ss_pred ECCEEcceeeeEEEEecHHHHHHhhhhhcccceecCC--------------CcCCeEEECcEEeccC
Confidence 9999999999999999999999999999999998642 3579999999999996
No 4
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=8.1e-68 Score=559.82 Aligned_cols=277 Identities=21% Similarity=0.307 Sum_probs=251.0
Q ss_pred CcccCCCHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHHH
Q psy9403 1 MRIKGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYE 80 (737)
Q Consensus 1 lr~kgEt~eEl~g~~~a~~~~~~~~~~~~~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~d 80 (737)
||+||||+|||+||++||++++.+++++....+|+|||||||++| |||||++|||+|++|+||+|||||+.||++||+|
T Consensus 46 lr~Kget~eEi~G~~~am~~~~~~~~~p~~~~vDi~GTGGDg~~T-~NiSt~aA~v~A~~Gv~VaKHGnrs~sSksGsaD 124 (338)
T COG0547 46 LRIKGETPEEIAGFAEAMREHAPKLPVPAADPVDIVGTGGDGANT-INISTAAAIVAAAAGVPVAKHGNRSVSSKSGSAD 124 (338)
T ss_pred HHHhcCCHHHHHHHHHHHHHhcccCCCCCCCCCCeecCCCCCCCc-ccchHHHHHHHHhCCCcEEeECCCCCCCCCcHHH
Confidence 699999999999999999999887776654459999999999997 9999999999999999999999999999999999
Q ss_pred HHHHcCCCCcCCHHHHHHHHHhCCeEeEecccccHHHHHHHHHHhHcCCCCchhhHHHhhcCCCCCCc---eEEEeeCcc
Q psy9403 81 ILKKLGYFAVSSKKKAIKYLKLKRLVFMDISILIPELSKLLEIYYMLGIRNSSHLLVKIIQPLSIPAL---RLVSYTHPE 157 (737)
Q Consensus 81 vl~~lGi~~~~~~~~~~~~l~~~g~~fl~~~~~~p~l~~l~~~R~~lg~Rt~~~t~~~ll~Pl~~p~~---~v~Gv~h~~ 157 (737)
+|++|||+++.+|++++++|++.||+|||+|.|||+|++++++|++||+|| +||+||||.||++ ||+|||||+
T Consensus 125 vleaLGv~l~~~~e~~~~~l~~~g~~FlfAp~~hp~~k~v~~vR~~LG~RT----ifN~LGPL~NPa~~~~qliGV~~p~ 200 (338)
T COG0547 125 VLEALGVNLELSPEQAARALEETGIGFLFAPAYHPAMKHVAPVRKELGVRT----IFNLLGPLLNPARAKLQLIGVYHPE 200 (338)
T ss_pred HHHHcCCCCCCCHHHHHHHHHhcCeEEEEccccCHHHHHHHHHHHHcCCCc----hHHhhccccCCCCCCceEEEEeCHH
Confidence 999999999999999999999999999999999999999999999999999 9999999999985 999999999
Q ss_pred cHHHHHHHHhhccCCCeEEEEEeCCCceeecCCCCcEEEEEeeCCeEE--EEcCCCCCCcCCCCC----CCHHHHHHHHH
Q psy9403 158 YLKILSDYFYNEKSLGDIFLMQGTEGEVIPNICNSKQIIHWFHDNKYT--KLTKEQNKEISFPKN----SNINDNVLWIQ 231 (737)
Q Consensus 158 ~~~~~~~~~~~~~g~~~~~vv~G~eG~de~s~~~~t~~~~~~~~g~~~--~~~p~~~g~~~~~~~----~~~~~~a~~~~ 231 (737)
|.++++++++. +|.++++||||.+|+||++|+++|+|+++ ++|+++ +++|+|||+++++++ +||++||++++
T Consensus 201 ~~~~~A~~l~~-LG~~ralvV~G~~GlDE~~~~~~t~v~~l-~~g~i~~~~l~pe~~Gl~~~~~~~l~~~~~~ena~~~~ 278 (338)
T COG0547 201 LVELLAEALRL-LGVERALVVHGLEGLDEVTPTGTTLVAEL-KDGEIREYTLTPEDFGLERAPLEDLPGGDPEENAEILR 278 (338)
T ss_pred HHHHHHHHHHH-hCcceEEEEECCCCcccccCCCCceEEEE-cCCceEEEEeCHHhcCCCCCchhhcCCCCHHHHHHHHH
Confidence 99999999999 99999999999999999999999999999 999988 799999999987665 79999999999
Q ss_pred HHHcCCCCCc--hhhhhhhcccccccccccCcchhhhhhcCC--CCCCCHHHHHHHHHH
Q psy9403 232 SVLDNKLPIP--STIINQVKNCILISQKNIHPLNIARSILLE--PFDLDEKILLKILGN 286 (737)
Q Consensus 232 ~vl~G~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~il~~ 286 (737)
++|+|+. +| ..+++|+|++||++|++=+ +-...+++++ ..|...+.+++++..
T Consensus 279 ~vL~G~~-~~~~d~v~~Naa~~L~~~g~a~~-l~eg~~~A~~~i~sG~a~~~l~~l~~~ 335 (338)
T COG0547 279 AVLAGEE-GPARDAVALNAAAALYAAGKAES-LKEGIALALEAIDSGAALEKLEELVAF 335 (338)
T ss_pred HHHCCCC-cchHHHHHHHHHHHHHHcCccCC-HHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 9999984 44 4799999999999998877 4444444444 334444555555443
No 5
>PRK07394 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-62 Score=529.41 Aligned_cols=257 Identities=19% Similarity=0.193 Sum_probs=232.8
Q ss_pred CcccCCCHHHHHHHHHHHHhcCCCCCCCCC-CCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCc--
Q psy9403 1 MRIKGESVEEISGFLNAINSLFIPLEIPIS-KYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRIT-- 77 (737)
Q Consensus 1 lr~kgEt~eEl~g~~~a~~~~~~~~~~~~~-~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~g-- 77 (737)
||+||||+|||+||++|||+++.+++.+.. ..+|+|||||||++++|||||++|+++|++|+||+|||||+++|++|
T Consensus 51 lr~KGET~eEiaG~~~a~~~~~~~~~~~~~~~~~d~~GtggDG~~~t~NiSt~aA~v~A~~Gv~V~kHGnr~~ssk~Gvt 130 (342)
T PRK07394 51 HRIKRPTPEELAGMLDTYDELGPKLQSPSNQRPPIVFGMPYDGRSRTAPIYPLTALILAAAGQPVVLHGGDRMPTKYGVP 130 (342)
T ss_pred HHhhCCCHHHHHHHHHHHHHhCCCCCCCCCCCceeEEeCCCCCCCCCcccHHHHHHHHHHCCCeEEEECCCCCCCCCCch
Confidence 699999999999999999999877654322 36899999999985449999999999999999999999999999988
Q ss_pred HHHHHHHcCCCCcC-CHHHHHHHHHhCCeEeEecccccHHHHHHHHHHhHcCCCCchhhHHHhhcCCCCCCceEEEeeCc
Q psy9403 78 TYEILKKLGYFAVS-SKKKAIKYLKLKRLVFMDISILIPELSKLLEIYYMLGIRNSSHLLVKIIQPLSIPALRLVSYTHP 156 (737)
Q Consensus 78 s~dvl~~lGi~~~~-~~~~~~~~l~~~g~~fl~~~~~~p~l~~l~~~R~~lg~Rt~~~t~~~ll~Pl~~p~~~v~Gv~h~ 156 (737)
|+|+|++|||+++. +|+++.++|+++||+|||+|.|||+|++++++|++||+||++||+.+|+||+.+|.+||+|||||
T Consensus 131 saDvLe~LGv~~~~~~~~~~~~~l~~~g~~Fl~ap~~hP~m~~~~~vR~~Lg~RT~fN~lgpL~NP~a~~~~~v~Gv~~~ 210 (342)
T PRK07394 131 LVELWQGLGVDLTGLSLEQVQEGFEQTGLAFIYQPDHFPLAESLIPYRDEIGKRPPLATLELIWTPHQGDHHLVSGFVHP 210 (342)
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHcCceeeechhhCHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCCCCceEEEeeCH
Confidence 99999999999999 99999999999999999999999999999999999999995555555555543343499999999
Q ss_pred ccHHHHHHHHhhccCCCeEEEEEeCCCceeecCCCCcEEEEEeeCCeEE--EEcCCCCCCcCCCCC-CCHHHHHHHHHHH
Q psy9403 157 EYLKILSDYFYNEKSLGDIFLMQGTEGEVIPNICNSKQIIHWFHDNKYT--KLTKEQNKEISFPKN-SNINDNVLWIQSV 233 (737)
Q Consensus 157 ~~~~~~~~~~~~~~g~~~~~vv~G~eG~de~s~~~~t~~~~~~~~g~~~--~~~p~~~g~~~~~~~-~~~~~~a~~~~~v 233 (737)
+|.++|+++++. +|.++++||||.||+||++++++|.++++ ++|+++ +++|+|||++..++. +++++||++++++
T Consensus 211 ~~~~~~a~~l~~-lg~~~~~vv~G~~G~dE~s~~~~t~v~~~-~~g~i~~~~i~p~d~G~~~~~l~~~~~~~na~~~~~v 288 (342)
T PRK07394 211 PTEARAWEALEL-RGETNFTTVKGLEGSCDLPISRTAIIGRV-QNGHFERLILHPRDYGCGGKDVPWESTEEWLEQAQAA 288 (342)
T ss_pred HHHHHHHHHHHH-cCCCeEEEEEcCCCceeccCCCCeEEEEE-cCCeEEEEEECHHHcCCCcccCCCCCHHHHHHHHHHH
Confidence 999999999998 99999999999999999999999999999 999877 999999999987665 8999999999999
Q ss_pred HcCCCCCc--hhhhhhhcccccccccccC
Q psy9403 234 LDNKLPIP--STIINQVKNCILISQKNIH 260 (737)
Q Consensus 234 l~G~~~~~--~~~~~~~~~~l~~~~~~~~ 260 (737)
|+|+ .++ ..+++|+|++|+++|++-+
T Consensus 289 l~G~-~~~~~~~v~lNaa~~L~~~g~~~s 316 (342)
T PRK07394 289 LNGE-PGPLTQALIWNGGFYLWRAGISSS 316 (342)
T ss_pred HCCC-CcchhHHHHHHHHHHHHHcCCCCC
Confidence 9998 344 3699999999999998866
No 6
>PRK08136 glycosyl transferase family protein; Provisional
Probab=100.00 E-value=5e-61 Score=509.17 Aligned_cols=255 Identities=35% Similarity=0.567 Sum_probs=229.9
Q ss_pred CcccCCCHHHHHHHHHHHHhcCCCCCCCCC--CCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcH
Q psy9403 1 MRIKGESVEEISGFLNAINSLFIPLEIPIS--KYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITT 78 (737)
Q Consensus 1 lr~kgEt~eEl~g~~~a~~~~~~~~~~~~~--~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs 78 (737)
||+||||+|||+||++|||+++.+++.+.. ..+|+||||||++ ++||||++|+|+|++|+||+|||||+++||+||
T Consensus 49 lr~KgET~eElaG~~~a~~~~~~~~~~~~~~~~~iD~~gtgGd~~--t~nist~aA~vlA~~G~~V~kHGnr~vssk~gs 126 (317)
T PRK08136 49 LRIKGESEAEMLGFLDAMQAHTIPLTPPAGRPMPVVIPSYNGARK--QANLTPLLALLLAREGVPVLVHGVSEDPTRVTS 126 (317)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCCCCCCCCceEEeCCCCCCCC--CcChHHHHHHHHHHCCCeEEEECCCCCCCcccH
Confidence 699999999999999999999987754322 2578777777754 599999999999999999999999999999999
Q ss_pred HHHHHHcCCCCcCCHHHHHHHHHhCCeEeEecccccHHHHHHHHHHhHcCCCCchhhHHHhhcCC-CCCCceEEEeeCcc
Q psy9403 79 YEILKKLGYFAVSSKKKAIKYLKLKRLVFMDISILIPELSKLLEIYYMLGIRNSSHLLVKIIQPL-SIPALRLVSYTHPE 157 (737)
Q Consensus 79 ~dvl~~lGi~~~~~~~~~~~~l~~~g~~fl~~~~~~p~l~~l~~~R~~lg~Rt~~~t~~~ll~Pl-~~p~~~v~Gv~h~~ 157 (737)
+||||+|||+++.+|++++++|++.||+|||+|.|||+|++++++|++||+||++||+.+|+||+ .+|.+||+|||||+
T Consensus 127 advleaLGi~~~~~~~~~~~~l~~~g~~fl~ap~~hPa~~~~~~vR~~LG~RT~fN~lgpL~NP~~a~~~~~v~Gv~~~~ 206 (317)
T PRK08136 127 AEIFEALGIPPTLHADQAQAKLAEGQPAFIPVGVLCPPLARLLALRWRMGVRNSAHTLAKLATPFAEGAALRLSSYTHPE 206 (317)
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHhcCeEEEEhHHhCHHHHHHHHHHHHhCCCCHHHHHHHhcCccccCCCeEEEeeeChH
Confidence 99999999999999999999999999999999999999999999999999999777777777774 33334999999999
Q ss_pred cHHHHHHHHhhccCCCeEEEEEeCCCceeecCCCCcEEEEEeeCCeEE-EEcCCCCCCcCCC---CCCCHHHHHHHHHHH
Q psy9403 158 YLKILSDYFYNEKSLGDIFLMQGTEGEVIPNICNSKQIIHWFHDNKYT-KLTKEQNKEISFP---KNSNINDNVLWIQSV 233 (737)
Q Consensus 158 ~~~~~~~~~~~~~g~~~~~vv~G~eG~de~s~~~~t~~~~~~~~g~~~-~~~p~~~g~~~~~---~~~~~~~~a~~~~~v 233 (737)
|.++|++++++ +|. +++||||.||+||+||+++|+++++ ++|+++ .++|+++|++.++ ..+|+++||++++++
T Consensus 207 ~~~~~a~~l~~-lg~-~alvv~G~~G~dE~s~~~~t~v~~~-~~g~~~~~~~p~~~g~~~~~~~~~~~~~~~na~~~~~v 283 (317)
T PRK08136 207 YRDRLAEFFSD-IGA-RALLMRGTEGEVYANPRRCPQIDWI-HDGGCRVLVERQSGSADEPPELPAAKDAATTAAWIERV 283 (317)
T ss_pred HHHHHHHHHHH-cCC-CEEEEEcCCCceeecCCCCceEEEE-eCCEEEEEECHHHcCCccCchhccCCCHHHHHHHHHHH
Confidence 99999999998 997 9999999999999999999999999 899887 8999999998764 227999999999999
Q ss_pred HcCCCCCchhhhhhhcccccccccccC
Q psy9403 234 LDNKLPIPSTIINQVKNCILISQKNIH 260 (737)
Q Consensus 234 l~G~~~~~~~~~~~~~~~l~~~~~~~~ 260 (737)
|+|+.+.+.++++|+|++|+++|++-+
T Consensus 284 L~G~~~~~d~v~lNaa~~l~~~g~~~~ 310 (317)
T PRK08136 284 LAGEVPVPESIARQVACCLVAAGEAAT 310 (317)
T ss_pred HCCCCCcchHHHHHHHHHHHHcCccCC
Confidence 999755567899999999999998754
No 7
>PLN02641 anthranilate phosphoribosyltransferase
Probab=100.00 E-value=4.4e-61 Score=515.46 Aligned_cols=253 Identities=15% Similarity=0.168 Sum_probs=231.2
Q ss_pred CcccCCCHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHHH
Q psy9403 1 MRIKGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYE 80 (737)
Q Consensus 1 lr~kgEt~eEl~g~~~a~~~~~~~~~~~~~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~d 80 (737)
||+||||+|||+||++|||+++.+++.. ...+|+|||||||++| |||||++|+++|++|+||+|||||+.+|++||+|
T Consensus 45 lr~kget~eEiag~~~a~~~~~~~~~~~-~~~~D~~gtGGdg~~t-~nist~aa~v~A~~G~~V~kHGnr~~ss~~GsaD 122 (343)
T PLN02641 45 LRAKGETFEEIAGLARAMIKRARKVDGL-VDAVDIVGTGGDGANT-VNISTGSSILAAACGAKVAKQGNRSSSSACGSAD 122 (343)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCCCC-CCCCceeCCCCCCCCc-cccHHHHHHHHHhCCCeEEEeCCCCCCCccCHHH
Confidence 6999999999999999999998776532 3479999999999998 9999999999999999999999999999999999
Q ss_pred HHHHcCCCCcCCHHHHHHHHHhCCeEeEecccccHHHHHHHHHHhHcCCCCchhhHHHhhcCCCCCCceEEEeeCcccHH
Q psy9403 81 ILKKLGYFAVSSKKKAIKYLKLKRLVFMDISILIPELSKLLEIYYMLGIRNSSHLLVKIIQPLSIPALRLVSYTHPEYLK 160 (737)
Q Consensus 81 vl~~lGi~~~~~~~~~~~~l~~~g~~fl~~~~~~p~l~~l~~~R~~lg~Rt~~~t~~~ll~Pl~~p~~~v~Gv~h~~~~~ 160 (737)
+|++|||+++.+|+++.++|+++||+|||+|.|||+|++++++|++||+||++||+..|+||...+ +||+|||||+|.+
T Consensus 123 vLeaLGi~~~~~~~~~~~~l~~~g~~fl~a~~~hPa~~~~~~~R~~LG~RT~fN~lgpL~NPa~~~-~~v~GV~~~~~~~ 201 (343)
T PLN02641 123 VLEALGVAIDLGPEGVKRCVEEVGIGFMMAPKYHPAMKIVAPVRKKLKVKTVFNILGPMLNPARVP-HAVVGVYHESLVE 201 (343)
T ss_pred HHHHcCCCCCCCHHHHHHHHHhcCcEEEechhhCHHHHHHHHHHHHhCCCcHHHHHHHhcCCCCCC-ceEEeeeCHHHHH
Confidence 999999999999999999999999999999999999999999999999999555555555554433 3999999999999
Q ss_pred HHHHHHhhccCCCeEEEEEeCCCceeecCCCCcEEEEEeeCCeEE--EEcCCCCCCcCCCCC----CCHHHHHHHHHHHH
Q psy9403 161 ILSDYFYNEKSLGDIFLMQGTEGEVIPNICNSKQIIHWFHDNKYT--KLTKEQNKEISFPKN----SNINDNVLWIQSVL 234 (737)
Q Consensus 161 ~~~~~~~~~~g~~~~~vv~G~eG~de~s~~~~t~~~~~~~~g~~~--~~~p~~~g~~~~~~~----~~~~~~a~~~~~vl 234 (737)
+|+++++. +|.++++|||| +|+||++|.++|+++++ .+|+++ +|+|+|||+++++.+ +|+++||++++++|
T Consensus 202 ~~a~al~~-lG~~~alVv~G-~G~DEis~~g~t~v~~~-~~g~i~~~~~~p~d~Gl~~~~~~~l~~~~~~~na~~~~~vL 278 (343)
T PLN02641 202 KMAKALQR-FGMKRALVVHS-EGLDEMSPLGPGDVLEV-TPEKIEEFSFDPLDFGIPRCTLEDLRGGDPDYNAKVLRDVL 278 (343)
T ss_pred HHHHHHHH-cCCCeEEEEec-CCCCccccCcceEEEEE-eCCceEEEEeCHHHcCCCcCCHHhcCCCCHHHHHHHHHHHH
Confidence 99999998 99999999999 79999999999999999 888877 899999999987765 89999999999999
Q ss_pred cCCCCCch--hhhhhhcccccccccccC
Q psy9403 235 DNKLPIPS--TIINQVKNCILISQKNIH 260 (737)
Q Consensus 235 ~G~~~~~~--~~~~~~~~~l~~~~~~~~ 260 (737)
+|+ .++. .+++|+|++|+++|++-+
T Consensus 279 ~G~-~~~~~d~v~lNaa~~L~~~g~~~s 305 (343)
T PLN02641 279 SGE-KGAIADALILNAAAALLVSGLAKT 305 (343)
T ss_pred CCC-CcchHHHHHHHHHHHHHHcCCCCC
Confidence 998 4453 699999999999998765
No 8
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=5.5e-59 Score=527.02 Aligned_cols=249 Identities=18% Similarity=0.229 Sum_probs=230.4
Q ss_pred CcccCCCHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHHH
Q psy9403 1 MRIKGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYE 80 (737)
Q Consensus 1 lr~kgEt~eEl~g~~~a~~~~~~~~~~~~~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~d 80 (737)
||+||||+|||+||++|||++..+++.+....+|+|||||||++| |||||++|+++|++|+||+|||||+.++++|++|
T Consensus 242 lr~kget~eEl~g~~~a~~~~~~~~~~~~~~~iD~~gtGgdg~~t-~nist~aa~v~A~~Gv~V~kHG~r~~ss~~Gsad 320 (531)
T PRK09522 242 MKIRGEHPNEIAGAATALLENAAPFPRPDYLFADIVGTGGDGSNS-INISTASAFVAAACGLKVAKHGNRSVSSKSGSSD 320 (531)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCCCCCCCcccccCCCCCCCCC-cccHHHHHHHHHhCCCcEEEeCCCCCCCCccHHH
Confidence 699999999999999999999877654333479999999999988 9999999999999999999999999999999999
Q ss_pred HHHHcCCCCcCCHHHHHHHHHhCCeEeEecccccHHHHHHHHHHhHcCCCCchhhHHHhhcCCCCCCc---eEEEeeCcc
Q psy9403 81 ILKKLGYFAVSSKKKAIKYLKLKRLVFMDISILIPELSKLLEIYYMLGIRNSSHLLVKIIQPLSIPAL---RLVSYTHPE 157 (737)
Q Consensus 81 vl~~lGi~~~~~~~~~~~~l~~~g~~fl~~~~~~p~l~~l~~~R~~lg~Rt~~~t~~~ll~Pl~~p~~---~v~Gv~h~~ 157 (737)
+|++|||+++.+++++.++|+++||+|||+|.|||+|++++++|++||+|| +||+|+||.||++ ||+|||||+
T Consensus 321 vlealGi~~~~~~~~~~~~l~~~g~~fl~ap~~hpam~~~~~~R~~Lg~rT----~fN~lgpL~NPa~~~~~v~Gv~~~~ 396 (531)
T PRK09522 321 LLAAFGINLDMNADKSRQALDELGVCFLFAPKYHTGFRHAMPVRQQLKTRT----LFNVLGPLINPAHPPLALIGVYSPE 396 (531)
T ss_pred HHHHcCCCCCCCHHHHHHHHHHhCcEEEEhhHhCHHHHHHHHHHHHhCCCc----HHHHHHHhcCCCCCCcEEEEeeCHH
Confidence 999999999999999999999999999999999999999999999999999 6666666666653 999999999
Q ss_pred cHHHHHHHHhhccCCCeEEEEEeCCCceeecCCCCcEEEEEeeCCeEE--EEcCCCCCCcCCCCC----CCHHHHHHHHH
Q psy9403 158 YLKILSDYFYNEKSLGDIFLMQGTEGEVIPNICNSKQIIHWFHDNKYT--KLTKEQNKEISFPKN----SNINDNVLWIQ 231 (737)
Q Consensus 158 ~~~~~~~~~~~~~g~~~~~vv~G~eG~de~s~~~~t~~~~~~~~g~~~--~~~p~~~g~~~~~~~----~~~~~~a~~~~ 231 (737)
|.++|++++++ +|.++++|||| +|+||+|++++|+++++ ++|+++ +|+|+|||++.++.+ +++++||++++
T Consensus 397 ~~~~~a~~l~~-lG~~~~~vv~G-~G~DEis~~~~t~v~~~-~~g~i~~~~~~P~d~Gl~~~~~~~i~g~~~~~na~~~~ 473 (531)
T PRK09522 397 LVLPIAETLRV-LGYQRAAVVHS-GGMDEVSLHAPTIVAEL-HDGEIKSYQLTAEDFGLTPYHQEQLAGGTPEENRDILT 473 (531)
T ss_pred HHHHHHHHHHH-hCCCeEEEEEC-CCccccCCCCceEEEEE-cCCeEEEEEECHHHcCCCCCCHHHhcCCCHHHHHHHHH
Confidence 99999999998 99999999999 89999999999999999 999987 899999999988765 79999999999
Q ss_pred HHHcCCCCCc--hhhhhhhccccccccc
Q psy9403 232 SVLDNKLPIP--STIINQVKNCILISQK 257 (737)
Q Consensus 232 ~vl~G~~~~~--~~~~~~~~~~l~~~~~ 257 (737)
++|+|+.+.+ .++++|+|++|+++|.
T Consensus 474 ~vl~G~~~~~~~~~v~~naa~~l~~~g~ 501 (531)
T PRK09522 474 RLLQGKGDAAHEAAVAANVAMLMRLHGH 501 (531)
T ss_pred HHHCCCCCchhHHHHHHHHHHHHHHcCC
Confidence 9999984433 3788999999999994
No 9
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=100.00 E-value=4.8e-58 Score=493.89 Aligned_cols=256 Identities=17% Similarity=0.274 Sum_probs=237.4
Q ss_pred CcccCCCHHHHHHHHHHHHhcCCCCCCC-CCCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHH
Q psy9403 1 MRIKGESVEEISGFLNAINSLFIPLEIP-ISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTY 79 (737)
Q Consensus 1 lr~kgEt~eEl~g~~~a~~~~~~~~~~~-~~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~ 79 (737)
||+||||+|||+||++||+++..+++.+ ....+|+|||||||+++ +||||++|+++|++|+||+|||||+.+|++|++
T Consensus 39 lr~kget~~Elag~~~a~~~~~~~~~~~~~~~~iD~~gtggdg~~t-~nist~~a~vlA~~G~~V~kHG~r~~~s~~Gs~ 117 (330)
T TIGR01245 39 LRIKGETPEEITGFAKAMREHAVKVPGRPVEDLVDIVGTGGDGANT-INISTASAFVAAAAGVKVAKHGNRSVSSKSGSA 117 (330)
T ss_pred HHHcCCCHHHHHHHHHHHHHhCCCCCCccCCCcccccCCCCCCCCc-cccHHHHHHHHHhCCCEEEEeCCCCCCCCccHH
Confidence 6999999999999999999999877642 34579999999999987 999999999999999999999999999999999
Q ss_pred HHHHHcCCCCcCCHHHHHHHHHhCCeEeEecccccHHHHHHHHHHhHcCCCCchhhHHHhhcCCCCCCceEEEeeCcccH
Q psy9403 80 EILKKLGYFAVSSKKKAIKYLKLKRLVFMDISILIPELSKLLEIYYMLGIRNSSHLLVKIIQPLSIPALRLVSYTHPEYL 159 (737)
Q Consensus 80 dvl~~lGi~~~~~~~~~~~~l~~~g~~fl~~~~~~p~l~~l~~~R~~lg~Rt~~~t~~~ll~Pl~~p~~~v~Gv~h~~~~ 159 (737)
|+|++|||+++.++++++++|+++||+|+++|.|||+|++++++|++||+||++||+.+|+||+..+. +|+|||||+|.
T Consensus 118 d~le~LGi~~~~s~~~~~~~l~~~g~~f~~~~~~~P~~~~l~~lR~~lg~rT~~N~lgpL~NP~~~~~-~v~Gv~~~~~~ 196 (330)
T TIGR01245 118 DVLEALGVNLDLGPEKVARSLEETGIGFLFAPLYHPAMKHVAPVRRELGVRTVFNLLGPLTNPARPKY-QVIGVYDPDLV 196 (330)
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHhCcEEeechhhCHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCCCC-EEEcccCHHHH
Confidence 99999999999999999999999999999999999999999999999999998888888888876654 99999999999
Q ss_pred HHHHHHHhhccCCCeEEEEEeCCCceeecCCCCcEEEEEeeCCeEE--EEcCCCCCCcCCCCC----CCHHHHHHHHHHH
Q psy9403 160 KILSDYFYNEKSLGDIFLMQGTEGEVIPNICNSKQIIHWFHDNKYT--KLTKEQNKEISFPKN----SNINDNVLWIQSV 233 (737)
Q Consensus 160 ~~~~~~~~~~~g~~~~~vv~G~eG~de~s~~~~t~~~~~~~~g~~~--~~~p~~~g~~~~~~~----~~~~~~a~~~~~v 233 (737)
++|+++++. +|.++++||||.||+||+||+++|+++++ ++|++. +|+|+|||++..+.+ +++++|+++++++
T Consensus 197 ~~~a~~~~~-lg~~~~~vv~G~~G~dE~s~~~~t~v~~~-~~g~~~~~~i~p~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 274 (330)
T TIGR01245 197 EVMAEALKN-LGVKRALVVHGDDGLDEISLTGPTTVAEL-KDGEIREYTLDPEDFGLPRAPLEELAGGSPEENAEILRDI 274 (330)
T ss_pred HHHHHHHHH-hCCCeEEEEECCCCceeecCCCcEEEEEE-ECCEEEEEeCCHHHcCCCcCCHhhcCCCCHHHHHHHHHHH
Confidence 999999998 99999999999999999999999999999 999876 899999999987532 7999999999999
Q ss_pred HcCCCCCch--hhhhhhcccccccccccC
Q psy9403 234 LDNKLPIPS--TIINQVKNCILISQKNIH 260 (737)
Q Consensus 234 l~G~~~~~~--~~~~~~~~~l~~~~~~~~ 260 (737)
|+|+.+++. .+++|+|++|+++|++-+
T Consensus 275 l~G~~~~~~~~~v~lnaA~~L~~~g~~~s 303 (330)
T TIGR01245 275 LRGKGSGAKRDIVALNAAAALYVAGRASD 303 (330)
T ss_pred HCCCCCCcHHHHHHHHHHHHHHHcCCCCC
Confidence 999854553 699999999999998754
No 10
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=3.1e-58 Score=525.02 Aligned_cols=278 Identities=18% Similarity=0.274 Sum_probs=244.1
Q ss_pred CcccCCCHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHHH
Q psy9403 1 MRIKGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYE 80 (737)
Q Consensus 1 lr~kgEt~eEl~g~~~a~~~~~~~~~~~~~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~d 80 (737)
||+||||+|||+||++|||+++.+++.+....+|+|||||||+++ |||||++|+++|++|+||+|||||+.+|++||+|
T Consensus 237 lr~kget~~El~g~~~a~~~~~~~~~~~~~~~~D~~gtggdg~~t-~nist~~a~v~A~~G~~V~kHG~r~~ss~~Gsad 315 (534)
T PRK14607 237 LRMKGETADELAGFASVMREKSRHIPAPSPRTVDTCGTGGDGFGT-FNISTTSAFVVAAAGVPVAKHGNRAVSSKSGSAD 315 (534)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCCCCCCCceEEccCCCCCCCc-cccHHHHHHHHHhCCCcEEEECCCCCCCCccHHH
Confidence 699999999999999999999987765433479999999999988 9999999999999999999999999999999999
Q ss_pred HHHHcCCCCcCCHHHHHHHHHhCCeEeEecccccHHHHHHHHHHhHcCCCCchhhHHHhhcCCCCCC---ceEEEeeCcc
Q psy9403 81 ILKKLGYFAVSSKKKAIKYLKLKRLVFMDISILIPELSKLLEIYYMLGIRNSSHLLVKIIQPLSIPA---LRLVSYTHPE 157 (737)
Q Consensus 81 vl~~lGi~~~~~~~~~~~~l~~~g~~fl~~~~~~p~l~~l~~~R~~lg~Rt~~~t~~~ll~Pl~~p~---~~v~Gv~h~~ 157 (737)
+||+||++++.+++++.++|+++||+|||+|.|||+|++++++|++||+|| +||+|+||.||+ +||+|||||+
T Consensus 316 vle~lGv~~~~~~~~~~~~l~~~g~~fl~ap~~~p~l~~~~~~R~~Lg~rT----ifN~lgpL~NP~~~~~~v~Gv~~~~ 391 (534)
T PRK14607 316 VLEALGVKLEMTPEEAASVLRETGFSFLFAPLFHPAMKHAAPARRELGIRT----AFNLLGPLTNPARVKYQIVGVFDPS 391 (534)
T ss_pred HHHHcCCCCCCCHHHHHHHHHHhCcEEeeccccCHHHHHHHHHHHHhCCCc----HHHhHHhccCCCCCCcEEEeeCCHH
Confidence 999999999999999999999999999999999999999999999999999 666666666665 3999999999
Q ss_pred cHHHHHHHHhhccCCCeEEEEEeCCCceeecCCCCcEEEEEeeCCeEE--EEcCCCCCCcCCCCC----CCHHHHHHHHH
Q psy9403 158 YLKILSDYFYNEKSLGDIFLMQGTEGEVIPNICNSKQIIHWFHDNKYT--KLTKEQNKEISFPKN----SNINDNVLWIQ 231 (737)
Q Consensus 158 ~~~~~~~~~~~~~g~~~~~vv~G~eG~de~s~~~~t~~~~~~~~g~~~--~~~p~~~g~~~~~~~----~~~~~~a~~~~ 231 (737)
|.++|+++++. +|.++++||||.||+||+||+++|+++++ ++|++. +|+|+|||++.++.+ +|+++||++++
T Consensus 392 ~~~~~a~~l~~-lg~~~~~vv~G~~G~dE~s~~~~t~v~~~-~~g~i~~~~i~p~~~Gl~~~~~~~~~~~~~~~na~~~~ 469 (534)
T PRK14607 392 YAEPLAQALQR-LGTERAMVVSGIDGYDEISTCGPTQILEL-EDGEIVTYTFDPEELGLKRVDPEELKGGDPQENYRLAE 469 (534)
T ss_pred HHHHHHHHHHH-cCCCEEEEEeCCCCCccccCCCceEEEEE-cCCEEEEEEEcHHHCCCCCCCHHHcCCCCHHHHHHHHH
Confidence 99999999998 99999999999999999999999999999 999976 899999999987654 79999999999
Q ss_pred HHHcCCCCCc--hhhhhhhcccccccccccCcchhhhhhcCCCC--CCCHHHHHHHHHH
Q psy9403 232 SVLDNKLPIP--STIINQVKNCILISQKNIHPLNIARSILLEPF--DLDEKILLKILGN 286 (737)
Q Consensus 232 ~vl~G~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~il~~ 286 (737)
++|+|+..++ ..+++|+|++|+++|++-+ .-.+.+.+++.. |-..+.++++++.
T Consensus 470 ~vl~G~~~~~~~~~v~lnaA~~L~~~g~~~s-~~eg~~~a~~~i~sG~a~~~l~~~~~~ 527 (534)
T PRK14607 470 DVLKGEPRRPQRDAVALNAGAALYLVGEADS-IKEGVGKALDLIDDGRAYKKLEEVMDL 527 (534)
T ss_pred HHHCCCCCChHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999985355 3799999999999998866 333333333322 2333344444443
No 11
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=2.5e-57 Score=490.54 Aligned_cols=255 Identities=19% Similarity=0.294 Sum_probs=237.1
Q ss_pred CcccCCCHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHHH
Q psy9403 1 MRIKGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYE 80 (737)
Q Consensus 1 lr~kgEt~eEl~g~~~a~~~~~~~~~~~~~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~d 80 (737)
||+||||+|||+||++||+++..+++.+. ..+|+|||||||+++ |||||++|++||++|+||+||||++.++++|++|
T Consensus 45 lr~kget~~El~g~~~a~~~~~~~~~~~~-~~iDi~gtggdg~~t-~nis~~~a~vlA~~G~~V~kHG~~~~~s~~Gsad 122 (339)
T PRK00188 45 LRVKGETVDEIAGAARAMREHAVPVPDPD-DAVDIVGTGGDGANT-FNISTAAAFVAAAAGVKVAKHGNRSVSSKSGSAD 122 (339)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCCCCC-CCCcccCCCCCCCCc-cchHHHHHHHHHhCCCEEEEECCCCCCCCcCHHH
Confidence 69999999999999999999998775443 479999999999977 9999999999999999999999999999999999
Q ss_pred HHHHcCCCCcCCHHHHHHHHHhCCeEeEecccccHHHHHHHHHHhHcCCCCchhhHHHhhcCCCCCCceEEEeeCcccHH
Q psy9403 81 ILKKLGYFAVSSKKKAIKYLKLKRLVFMDISILIPELSKLLEIYYMLGIRNSSHLLVKIIQPLSIPALRLVSYTHPEYLK 160 (737)
Q Consensus 81 vl~~lGi~~~~~~~~~~~~l~~~g~~fl~~~~~~p~l~~l~~~R~~lg~Rt~~~t~~~ll~Pl~~p~~~v~Gv~h~~~~~ 160 (737)
+|++||++++.+++++.++|+++||+|+++|.|||+|++++++|++||+||++||+.+|+||+..+. +|+|||||+|.+
T Consensus 123 vLe~lGi~~~~~~~~~~~~l~~~g~~fl~a~~~~P~l~~l~~lR~~Lg~Rt~fN~l~~L~NP~~~~~-~v~Gv~h~~~~~ 201 (339)
T PRK00188 123 VLEALGVNLDLSPEQVARCLEEVGIGFLFAPLYHPAMKHVAPVRKELGIRTIFNLLGPLTNPARPKR-QLIGVYSPDLLE 201 (339)
T ss_pred HHHHcCCCCCCCHHHHHHHHHHcCcEEeeCcccCHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCCCC-EEEeecCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987554 999999999999
Q ss_pred HHHHHHhhccCCCeEEEEEeCCCceeecCCCCcEEEEEeeCCeEE--EEcCCCCCCcCCCCC----CCHHHHHHHHHHHH
Q psy9403 161 ILSDYFYNEKSLGDIFLMQGTEGEVIPNICNSKQIIHWFHDNKYT--KLTKEQNKEISFPKN----SNINDNVLWIQSVL 234 (737)
Q Consensus 161 ~~~~~~~~~~g~~~~~vv~G~eG~de~s~~~~t~~~~~~~~g~~~--~~~p~~~g~~~~~~~----~~~~~~a~~~~~vl 234 (737)
+|+++++. +|.++++||||.||+||++|+++|+++++ ++|++. .++|++||++..+.+ +++++|+++++++|
T Consensus 202 ~~a~~l~~-lg~~~~~vv~G~~G~dE~~~~~~t~v~~~-~~g~~~~~~i~p~~~Gl~~~~~~~~~~~~~~~~a~~~~~vl 279 (339)
T PRK00188 202 PMAEVLKR-LGSKRALVVHGSDGLDEISLTGPTTVAEL-KDGEIREYTLTPEDFGLPRAPLEDLRGGDPEENAAILRAVL 279 (339)
T ss_pred HHHHHHHH-hCCCeEEEEECCCCceeecCCCCEEEEEE-cCCEEEEEEECHHHcCCCcCCHHhcCCCCHHHHHHHHHHHH
Confidence 99999988 89999999999999999999999999999 899865 899999999976543 79999999999999
Q ss_pred cCCCCCch--hhhhhhcccccccccccC
Q psy9403 235 DNKLPIPS--TIINQVKNCILISQKNIH 260 (737)
Q Consensus 235 ~G~~~~~~--~~~~~~~~~l~~~~~~~~ 260 (737)
+|+.+++. .+++|+|++|+++|++-+
T Consensus 280 ~G~~~~~~~~~v~lnaA~~L~~~g~~~s 307 (339)
T PRK00188 280 QGKGPGAARDAVLLNAAAALYVAGKADD 307 (339)
T ss_pred CCCCCCchHHHHHHHHHHHHHHcCCCCC
Confidence 99655553 689999999999998765
No 12
>PRK09071 hypothetical protein; Validated
Probab=100.00 E-value=6e-56 Score=472.73 Aligned_cols=250 Identities=21% Similarity=0.275 Sum_probs=218.6
Q ss_pred CcccCCCHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCc-HH
Q psy9403 1 MRIKGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRIT-TY 79 (737)
Q Consensus 1 lr~kgEt~eEl~g~~~a~~~~~~~~~~~~~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~g-s~ 79 (737)
||+||||+|||+||++|||+++.+++.+ ..+|+ ++|+|..++.||++++|+++|++|+||+||||++++|++| |+
T Consensus 50 lr~kgeT~eEi~g~~~a~r~~~~~~~~~--~~iD~--~~gtG~d~~~~~~~~~a~vlA~~G~~V~kHGnr~~ssk~g~sa 125 (323)
T PRK09071 50 LRVKEETAEELAGFVEAIRERLQAPPLA--VDLDW--PSYAGKRRHLPWYLLAAKLLAQNGYRVLLHGGGGHTAGRLYTE 125 (323)
T ss_pred HHHcCCCHHHHHHHHHHHHHhcccCCCC--Cceec--CCcCCCCCCcccHHHHHHHHHHCCCeEEEECCCCCCCCcccHH
Confidence 6999999999999999999999876532 23565 3444444446677899999999999999999999999985 99
Q ss_pred HHHHHcCCCCcCCHHHHHHHHHhCCeEeEecccccHHHHHHHHHHhHcCCCCchhhHHHhhcCCCCCCceEEEeeCcccH
Q psy9403 80 EILKKLGYFAVSSKKKAIKYLKLKRLVFMDISILIPELSKLLEIYYMLGIRNSSHLLVKIIQPLSIPALRLVSYTHPEYL 159 (737)
Q Consensus 80 dvl~~lGi~~~~~~~~~~~~l~~~g~~fl~~~~~~p~l~~l~~~R~~lg~Rt~~~t~~~ll~Pl~~p~~~v~Gv~h~~~~ 159 (737)
|+|++|||+++.+|+++.++|++.||+|||+|.|||+|++++++|++||+||++||+..|+||+..+. ||+|||||+|.
T Consensus 126 DvLeaLGv~~~~~~~~~~~~l~~~g~~fl~ap~~hPa~~~~~~~R~~lg~RT~fN~lgpL~NPa~~~~-~v~Gv~~~~~~ 204 (323)
T PRK09071 126 QLLEALGIPIARSWQEAEQALEEHNIAYLPLEDFAPQLQRMIDLRNTLGLRSPINTLARLLNPLNAKA-SLQGIFHPGYQ 204 (323)
T ss_pred HHHHHCCCCCCCCHHHHHHHHHhcCeEEeehHHhChHHHHHHHHHHHhCCCCHHHHHHHHcCcCCCCc-eEEeeEChhHH
Confidence 99999999999999999999999999999999999999999999999999996666666666655443 99999999999
Q ss_pred HHHHHHHhhccCCCeEEEEEeCCCceeecCCCCcEEEEEeeCCeEEEEcCCCCCCcCCCCCCCHHHHHHHHHHHHcCCCC
Q psy9403 160 KILSDYFYNEKSLGDIFLMQGTEGEVIPNICNSKQIIHWFHDNKYTKLTKEQNKEISFPKNSNINDNVLWIQSVLDNKLP 239 (737)
Q Consensus 160 ~~~~~~~~~~~g~~~~~vv~G~eG~de~s~~~~t~~~~~~~~g~~~~~~p~~~g~~~~~~~~~~~~~a~~~~~vl~G~~~ 239 (737)
++|+++++. +|.++++||||.+|+||+||+++|+++++ ++|++++...++||++..+. ++++|++++++||+|+..
T Consensus 205 ~~~a~~l~~-lg~~~alvv~G~~G~dE~s~~~~t~v~~~-~~g~i~~~~~~~~g~~~~~~--~~~~na~~~~~vl~G~~~ 280 (323)
T PRK09071 205 QLHREAARL-LGDQNALVFKGEGGESERNPDVSTTLYGS-RNGEAWDEEWPALSEERHVK--PEELDPEQLLAVWRGEEE 280 (323)
T ss_pred HHHHHHHHH-cCCCeEEEEECCCCceeecCCCceEEEEE-cCCeEEEEEecccccccCCC--CcccCHHHHHHHhCCCCC
Confidence 999999998 99999999999999999999999999999 89998855556699887654 899999999999999844
Q ss_pred Cc---hhhhhhhcccccccccccC
Q psy9403 240 IP---STIINQVKNCILISQKNIH 260 (737)
Q Consensus 240 ~~---~~~~~~~~~~l~~~~~~~~ 260 (737)
++ .+|++|+|++|+ +|++-+
T Consensus 281 ~~~~~d~v~~Naa~aL~-~g~~~s 303 (323)
T PRK09071 281 DEYGENAVIATMALALW-RGLNQS 303 (323)
T ss_pred chHHHHHHHHHHHHHHH-cCCCCC
Confidence 43 379999999999 998766
No 13
>PF00591 Glycos_transf_3: Glycosyl transferase family, a/b domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR000312 The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1V8G_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 3H5Q_A 1KHD_A 1KGZ_B 1AZY_A 1OTP_A ....
Probab=100.00 E-value=4.3e-52 Score=433.73 Aligned_cols=225 Identities=19% Similarity=0.292 Sum_probs=205.3
Q ss_pred CCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHHHHHHHcCCCCcCCHHHHHHHHHhCCeEeEec
Q psy9403 31 KYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYEILKKLGYFAVSSKKKAIKYLKLKRLVFMDI 110 (737)
Q Consensus 31 ~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~dvl~~lGi~~~~~~~~~~~~l~~~g~~fl~~ 110 (737)
..+|+|||||||.+| ||+||++|+++|++|+||+|||||+.++++|++|+||+||++++.++++++++|+++||+|+++
T Consensus 2 ~~~D~~gTGGd~~~t-~niSt~~a~vlAa~G~~V~kHG~r~~~~~~Gs~dvLe~LGv~~~~~~~~~~~~l~~~g~~fl~~ 80 (252)
T PF00591_consen 2 PVVDICGTGGDGDKT-FNISTAAAIVLAAAGVPVAKHGNRGVTSKSGSADVLEALGVPIDLSPEEAQAQLEETGIAFLFA 80 (252)
T ss_dssp TEEEEEESSCSSSTB-HHHHHHHHHHHHHTTSEEEEEEESGCTTSSSHHHHHHHSTB-TT--HHHHHHHHHHHSEEEEEH
T ss_pred CceEEecCCCCCCCc-eehHHHHHHHHHccCCcEecccCCCccccccHHHHHHhcCCCcCCCHHHHHHHhhccCeEEecc
Confidence 368999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhHcCCCCchhhHHHhhcCCCCCCceEEEeeCcccHHHHHHHHhhccCCCeEEEEEeCCCceeecCC
Q psy9403 111 SILIPELSKLLEIYYMLGIRNSSHLLVKIIQPLSIPALRLVSYTHPEYLKILSDYFYNEKSLGDIFLMQGTEGEVIPNIC 190 (737)
Q Consensus 111 ~~~~p~l~~l~~~R~~lg~Rt~~~t~~~ll~Pl~~p~~~v~Gv~h~~~~~~~~~~~~~~~g~~~~~vv~G~eG~de~s~~ 190 (737)
|.|||+|++++++|++||+||++||+.+|+||+..+. ||+|||||+|.++|+++++. +|++++++||| ||+||+++.
T Consensus 81 ~~~~p~~~~l~~~R~~lg~rT~~N~l~pL~nP~~~~~-~v~Gv~~~~~~~~~~~~~~~-lg~~~~~vv~G-~G~dE~~~~ 157 (252)
T PF00591_consen 81 PNFHPALKRLAPVRRELGIRTVFNTLGPLLNPANAKH-QVIGVFHPEYAELMAEALRD-LGYGRALVVKG-EGSDEISPL 157 (252)
T ss_dssp HHHSGGHHHHHHHHHHHTS--SHHHHGHHHHTT--SE-EEEEHSCHHHHHHHHHHHCC-ETESEEEEEEE-TTBSSHHHS
T ss_pred hhcCcchHHHHHHHHHcCCCCHHHhhhhhcCCcCCCc-EEEEEeCHHHHHHHHHHHHh-CCCceEEEEec-CCcchhhhc
Confidence 9999999999999999999998888888888877665 99999999999999999998 99999999999 999999999
Q ss_pred CCcEEEEEeeCCeEE--EEcCCCCCCcCCCCC----CCHHHHHHHHHHHHcCCCCCc--hhhhhhhcccccccccccC
Q psy9403 191 NSKQIIHWFHDNKYT--KLTKEQNKEISFPKN----SNINDNVLWIQSVLDNKLPIP--STIINQVKNCILISQKNIH 260 (737)
Q Consensus 191 ~~t~~~~~~~~g~~~--~~~p~~~g~~~~~~~----~~~~~~a~~~~~vl~G~~~~~--~~~~~~~~~~l~~~~~~~~ 260 (737)
++|.++++ ++|++. .++|++||+...+.+ +++++|+++++++|+|+...+ ..+++|+|++|+++|+.-+
T Consensus 158 ~~t~v~~~-~~g~~~~~~l~p~d~gl~~~~~~~l~~~~~~e~~~~~~~~L~G~~~~~~~d~v~~nAa~~L~~~g~~~s 234 (252)
T PF00591_consen 158 GPTRVYEL-KNGEITEYELDPEDFGLKRAPLEELEGGDPEENARILRAVLAGEEDPAHRDAVLLNAAAALYVAGKASS 234 (252)
T ss_dssp SHEEEEEH-HTTEEEEEEEEEGCCTSSSEEGGGGBHSSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSSSS
T ss_pred cCcEEEee-cCCceeEEecCHhhcCCCCCChHHhcCCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 99999999 889877 899999999876544 789999999999999996554 4699999999999999877
No 14
>PF01523 PmbA_TldD: Putative modulator of DNA gyrase; InterPro: IPR002510 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to MEROPS peptidase family U62 (clan U-). The type example is microcin-processing peptidase 1 from Escherichia coli, which is the product of the gene PmbA. It has been suggests that the pmbA gene product acts to inhibit the interaction between the letD protein and the A subunit of DNA gyrase. The letA (ccdA) and letD (ccdB) genes of the F plasmid, located just outside the sequence essential for F-plasmid replication, contribute to stable maintenance of the plasmid in E. coli cells. The letD gene product acts to inhibit partitioning of chromosomal DNA and cell division by inhibiting DNA gyrase activity, whereas the letA gene product acts to reverse the inhibitory activity of the letD gene product []. It has also been proposed that PmbA facilitates the secretion of microcin B17 (MccB17) the by completing its maturation []. Microcin B17 (MccB17) is a peptide antibiotic produced by E. coli strains harbouring plasmid pMccB17. ; PDB: 1VPB_A 1VL4_A 3TV9_A 3QTD_B.
Probab=100.00 E-value=2.2e-47 Score=407.86 Aligned_cols=291 Identities=33% Similarity=0.467 Sum_probs=225.6
Q ss_pred CEEEEEEEEEEEEEEEEECCeeeEeEEEEEeeEEEEEEECCeEEEEEcCCCCHHHHHHHHHHHHHHhcccCCCccccccc
Q psy9403 293 DYADFYFQFTKNENWILEEGIVKTGNFSINQGVGVRAISGDKTAFFYSDDISKNTLINAVKSTRSIANQSNGKIKIIKNI 372 (737)
Q Consensus 293 ~~~ei~~~~~~~~~i~~~~~~l~~~~~~~~~gigvRv~~~gr~G~a~t~~l~~~~l~~ai~~A~~~A~~~~~~~~~~~~~ 372 (737)
|+|||+++++++.+++++++++++.+...+.|++|||++|||+|+++++++++++|++++++|.++|+..+.++..+|..
T Consensus 1 D~aei~~~~~~~~~i~~~~~~i~~~~~~~~~g~~vrv~~~gk~g~~~~~~l~~~~l~~~i~~a~~~a~~~~~~~~~~~~~ 80 (293)
T PF01523_consen 1 DEAEIRVQRSESESIRFENGEIEQNSSSESSGIGVRVIKDGKWGFASTNDLDEEALERAIERALEAAKLSPEEPEELPDP 80 (293)
T ss_dssp SEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEETTEEEEEEESS-SHHHHHHHHHHHHHHHTCS--TT-SS--G
T ss_pred CeEEEEEEEEEEEEEEEECCEEEEeeeeeeeeEEEEEEECCEEEEEEcCCCCHHHHHHHHHHHHHHHhhcCcccccCCCc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999887434444431
Q ss_pred cccccCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHhccCCCEEEEEEEEEEEEEEEEEEEcCCCeeEEeeeEEEEEEEEE
Q psy9403 373 KKIKINSLYSF-TDTISSINIREKIKLLERVEKIARLKDPRVIKVIANLSGEYDVILITRNDGLIVADIRPLVQLFVTII 451 (737)
Q Consensus 373 ~~~~~~~~y~~-~~~~~~~~~~e~~e~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~nS~G~~~~~~~~~~~~~~~~~ 451 (737)
.+......++. ...+..+++++++++++++++.+++.++++..+ +.|+....++.++||+|..+++..+.+.+++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~nS~G~~~~~~~~~~~~~~~~~ 159 (293)
T PF01523_consen 81 SPEEPEKIFDPEDAEFDSISPEEKIELLKELEEAARESDPRIISV-GSYSDGREEKAIANSEGTDVSQERTRFSLSVSVF 159 (293)
T ss_dssp GGB-SS--S-TTGGGS----HHHHHHHHHHHHHHHHHSTTTEEEE-EEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEEE
T ss_pred cccccccccccccCCcccCCHHHHHHHHHHHHHHHhhcCCceEEE-EEEEEEEEEEEEECCCCCeeEEEEeeEeEEEEEE
Confidence 11111111221 112345799999999999999999988887655 9999999999999999999999999999999999
Q ss_pred EEeCCeeeeecccccccccccccc-cccHHHHHHHHHHHHHHhcCCCCCCCeeEEEEeCCchHHHHHHHHHhhccccchh
Q psy9403 452 VEKNGRREIGNSGCGGRYNYNYFT-DMILEKCVSNSVNSALINLEAKPAPAGIMKVVLGPGWPGILLHEAIGHGLEGDFN 530 (737)
Q Consensus 452 a~~g~~~~~~~~~~~~r~~~~~l~-~~d~~~~~~~a~~~a~~~l~a~~i~~g~y~Vil~p~a~~~ll~~~~~~~~~a~~v 530 (737)
+++|+..+++|.+.+ +..+. ..+++.++++++++|...++++++++|+|||||+|.++++|+|++++|+|+|+++
T Consensus 160 ~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~y~Vil~p~a~~~ll~~~~~~~~~a~~v 235 (293)
T PF01523_consen 160 AEDGGEVESGYGYGG----ASRRLSDLDPEELAREAAERALASLGAKPIPSGKYPVILSPEAAGELLHEAFGHAFEADSV 235 (293)
T ss_dssp EESTTEEEEEEEEEE----ESSGGGCS-HHHHHHHHHHHHHHTTT-B---SEEEEEEE-HHHHHHHHHHHHHHHTBHHHH
T ss_pred EecCCeEEEEecccc----ccccccccCHHHHHHHHHHHHHHHhCCCcCCCCeEEEEECcHHHHHHHHHHhhhhccCchh
Confidence 998888888741211 11122 2289999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCccccccCccccCCceEEEEcCCCCCCCCCccccCCCccccceeEEeCceechh
Q psy9403 531 RKGSSAFSNCIGKRIASKEITIVDNGTLANRRGSINIDDEGNPTQCTTLIENGILKGY 588 (737)
Q Consensus 531 ~~g~S~l~~klG~~v~s~~lti~DDP~~~~~~gs~~fDdEGv~t~~~~LIe~GvLk~~ 588 (737)
++|+|+|++|+|++|+|+.|||+|||++++++|+++|||||+|+++++||||||||+|
T Consensus 236 ~~g~S~l~~klG~~v~s~~ltl~Ddp~~~~~~~s~~fDdEG~~~~~~~LIe~GvLk~f 293 (293)
T PF01523_consen 236 YKGRSPLAGKLGEKVASELLTLIDDPTLPGGPGSRPFDDEGVPTQRTTLIENGVLKNF 293 (293)
T ss_dssp HTT--TTTT-TTSB-S-TT--EEEETT-TT-TT--SB-TTSBB---EEEEETTEE---
T ss_pred hcCCchhhccCCCEEecCceEEEEcCCCCCCCcCCCCCCCCCcCcceEEEECCEEeCC
Confidence 9999999999999999999999999999999999999999999999999999999997
No 15
>KOG1438|consensus
Probab=100.00 E-value=6.7e-50 Score=395.52 Aligned_cols=246 Identities=17% Similarity=0.190 Sum_probs=221.4
Q ss_pred CCHHHHHHHHHHHHhcC----CCCCC-----C--CCCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCC
Q psy9403 6 ESVEEISGFLNAINSLF----IPLEI-----P--ISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFG 74 (737)
Q Consensus 6 Et~eEl~g~~~a~~~~~----~~~~~-----~--~~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~ 74 (737)
+++|-|+-..+|+..++ .+++- + ..+.+|||||||||.|| ||+||.+|+|+|+||.+|+||||++.+|
T Consensus 67 ~~~e~l~ea~~al~s~s~~~~~pla~~~m~hpr~~~~~vDIVGTGGDG~NT-fNvST~saIvAag~GlkvcKhGnkaStS 145 (373)
T KOG1438|consen 67 SSLEFLLEANEALISASLVLLVPLARAMMKHPRKVEDAVDIVGTGGDGANT-FNVSTGSAIVAAGCGLKVCKHGNKASTS 145 (373)
T ss_pred hhHHHHHHHHHHHHHHHHHhccccchhhhhCcccCCceeEEeccCCCCcce-eeecchHHHHHhcccchhhhcCCccccc
Confidence 45666778888888886 23220 1 13479999999999999 9999999999999999999999999999
Q ss_pred CCcHHHHHHHcCCCC-cCCHHHHHHHHHhCCeEeEecccccHHHHHHHHHHhHcCCCCchhhHHHhhcCCCCCCc---eE
Q psy9403 75 RITTYEILKKLGYFA-VSSKKKAIKYLKLKRLVFMDISILIPELSKLLEIYYMLGIRNSSHLLVKIIQPLSIPAL---RL 150 (737)
Q Consensus 75 ~~gs~dvl~~lGi~~-~~~~~~~~~~l~~~g~~fl~~~~~~p~l~~l~~~R~~lg~Rt~~~t~~~ll~Pl~~p~~---~v 150 (737)
.+|++|+|++||+++ +.+|+.+.+++++.+|.||++|-|||+|+.+.|+||+||++| +||+|||+.||++ ++
T Consensus 146 asGsaDll~~lGCd~l~v~p~~i~~~~e~~~f~Fl~aPm~Hp~mk~V~piRK~LgipT----vFNilGPlLnP~~v~~ri 221 (373)
T KOG1438|consen 146 ASGSADLLEALGCDVLDVGPEGIKRCVEEGGFGFLMAPMYHPAMKIVGPIRKKLGIPT----VFNILGPLLNPARVSYRI 221 (373)
T ss_pred cCccHHHHHhcCceeeccCCcccccccccCceeEEechhhcccccchhHHHHhcCCcc----HHHhcccccCcchhhhhe
Confidence 999999999999876 679999999999999999999999999999999999999999 9999999999986 89
Q ss_pred EEeeCcccHHHHHHHHhhccCCCeEEEEEeCCCceeecCCCCcEEEEEeeCCeEE----EEcCCCCCCcCCCCC----CC
Q psy9403 151 VSYTHPEYLKILSDYFYNEKSLGDIFLMQGTEGEVIPNICNSKQIIHWFHDNKYT----KLTKEQNKEISFPKN----SN 222 (737)
Q Consensus 151 ~Gv~h~~~~~~~~~~~~~~~g~~~~~vv~G~eG~de~s~~~~t~~~~~~~~g~~~----~~~p~~~g~~~~~~~----~~ 222 (737)
+||||+++...|++++++ +|+++-++|+|++|+||+||.|+|++|.+ ++++++ .++|++||+++++++ +.
T Consensus 222 vGVy~k~L~~~~AKal~~-~g~gs~~~V~g~~GLDE~SP~G~t~vw~v-~~se~k~e~f~~~P~~Fgl~~h~Ls~~asgg 299 (373)
T KOG1438|consen 222 VGVYHKDLVVKMAKALQR-FGMGSRALVVGSCGLDEMSPLGGTLVWDV-TPSEEKIEEFSFDPLDFGLPRHTLSDLASGG 299 (373)
T ss_pred eeeeHHHHHHHHHHHHHH-hCCCceEEEEeccCccccCCCCCceEEEe-cCCceeeeeeecCHhhcCCCcCchhhhccCC
Confidence 999999999999999999 99999999999999999999999999999 887755 678999999999886 89
Q ss_pred HHHHHHHHHHHHcCCCCCch----hhhhhhcccccccccc
Q psy9403 223 INDNVLWIQSVLDNKLPIPS----TIINQVKNCILISQKN 258 (737)
Q Consensus 223 ~~~~a~~~~~vl~G~~~~~~----~~~~~~~~~l~~~~~~ 258 (737)
|.+||.+++++|+|+.-..+ -+++|.|++|++++..
T Consensus 300 P~~NAilleevLSg~~hagdPI~Dy~lmNtAall~vs~~~ 339 (373)
T KOG1438|consen 300 PDYNAILLEEVLSGESHAGDPIADYLLMNTAALLLVSNRV 339 (373)
T ss_pred CCccHHHHHHHhcCcccCCChHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999853323 3779999999998754
No 16
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=100.00 E-value=9.5e-35 Score=317.00 Aligned_cols=250 Identities=17% Similarity=0.110 Sum_probs=205.5
Q ss_pred CcccCCCHHHHHHHHHHHHhcCCCCCCCC--CCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcH
Q psy9403 1 MRIKGESVEEISGFLNAINSLFIPLEIPI--SKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITT 78 (737)
Q Consensus 1 lr~kgEt~eEl~g~~~a~~~~~~~~~~~~--~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs 78 (737)
+++||||+||++||++||+++..+++.+. ...+|+|||||||.++ +|+ +|+++|+||++|+|||||+.+|++|+
T Consensus 45 l~~kG~t~~Ei~~lt~aM~~sg~~~~~~~~~~~~vD~~gTGGdG~kt-~ni---~a~ivAA~Gv~VaKhgnR~lss~~GT 120 (434)
T PRK06078 45 IYFKDMTDRERADLTMAMVNSGDTIDLSAIEGIKVDKHSTGGVGDTT-TLV---LAPLVAAFGVPVAKMSGRGLGHTGGT 120 (434)
T ss_pred HHHcCCCHHHHHHHHHHHHHhCCcccCcccCCCeeEecCCCCCCCCc-hHH---HHHHHHcCCCCeeeeCCCCcCCCcch
Confidence 57899999999999999999998876542 2379999999999999 884 79999999999999999999999999
Q ss_pred HHHHHHc-CCCCcCCHHHHHHHHHhCCeEeEe-cccccHHHHHHHHHHhHcCCCCchhhHHHhhcCCCCC--------C-
Q psy9403 79 YEILKKL-GYFAVSSKKKAIKYLKLKRLVFMD-ISILIPELSKLLEIYYMLGIRNSSHLLVKIIQPLSIP--------A- 147 (737)
Q Consensus 79 ~dvl~~l-Gi~~~~~~~~~~~~l~~~g~~fl~-~~~~~p~l~~l~~~R~~lg~Rt~~~t~~~ll~Pl~~p--------~- 147 (737)
+|+||+| |++++++++++.++|++.|++|++ +|.|||+++++.++|++++. ||++ ||.|| +
T Consensus 121 aD~LE~lpG~~~~ls~e~~~~~l~~~G~~fl~~a~~~~PAdk~v~~lR~v~~t-------~n~l-PLi~~SImSKKlAag 192 (434)
T PRK06078 121 IDKLESIKGFHVEISQEDFIKLVNENKVAVIGQSGNLTPADKKLYALRDVTAT-------VNSI-PLIASSIMSKKIAAG 192 (434)
T ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHhCcEEEccCCCcChhhhhhHHHhccccc-------cChH-HhhhhHhhhhhhhcC
Confidence 9999999 999999999999999999999999 59999999999999999993 6666 66666 3
Q ss_pred --ceEEEee--------CcccHHHHHHHHhhccCCCeEEEEEeCCCceeecCCCCcEEEEEeeCCeEEEEcCCCCCCcCC
Q psy9403 148 --LRLVSYT--------HPEYLKILSDYFYNEKSLGDIFLMQGTEGEVIPNICNSKQIIHWFHDNKYTKLTKEQNKEISF 217 (737)
Q Consensus 148 --~~v~Gv~--------h~~~~~~~~~~~~~~~g~~~~~vv~G~eG~de~s~~~~t~~~~~~~~g~~~~~~p~~~g~~~~ 217 (737)
.+|+||+ +++..+.+++++.. +|.+ .+.+.++.+ .++ |+++|..
T Consensus 193 ~~~~vldV~~G~gAfm~~~~~a~~lA~~l~~-lG~~----------------~g~~~~a~l-t~~------~~plG~~-- 246 (434)
T PRK06078 193 ADAIVLDVKTGAGAFMKTVEDAEELAHAMVR-IGNN----------------VGRNTMAVI-SDM------SQPLGRA-- 246 (434)
T ss_pred CCeEEEeeecCCCCCCCCHHHHHHHHHHHHH-HHHh----------------cCCeEEEEE-CCC------Ccccccc--
Confidence 2999999 99999999999988 8754 456667787 654 7788873
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCCch--hhhhhhcccccccccccCcchhhhhhcCCCCCCCHHHHHHHHHHHhhCCCC
Q psy9403 218 PKNSNINDNVLWIQSVLDNKLPIPS--TIINQVKNCILISQKNIHPLNIARSILLEPFDLDEKILLKILGNMFKNKVD 293 (737)
Q Consensus 218 ~~~~~~~~~a~~~~~vl~G~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~a~~~g~~ 293 (737)
-+++.++++. +++|+|+.+.+. .++.|++.+|+++|++-+ ...+.+++.+-..= -+.+++.-+....+|.+
T Consensus 247 --iGna~Ev~Ea-~~vL~G~~~~~~~d~v~~~A~~~L~~~g~~~~-~~eg~~~a~e~l~s-GkAl~kf~~~v~aqGg~ 319 (434)
T PRK06078 247 --IGNALEVLEA-IDTLQGKGPKDLTELVLTLGSQMVVLAGKAKT-LEEAREHLIEVMNN-GKALEKFKEFLSAQGGD 319 (434)
T ss_pred --CCCHHHHHHH-HHHHCCCCcccHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhc-cHHHHHHHHHHHHhCCC
Confidence 2788999888 999999844333 588999999999999866 55555555443321 12234444444446655
No 17
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=99.97 E-value=3e-30 Score=279.98 Aligned_cols=248 Identities=16% Similarity=0.064 Sum_probs=191.9
Q ss_pred CcccCCCHHHHHHHHHHHHhcCCCCCCCC--CCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcH
Q psy9403 1 MRIKGESVEEISGFLNAINSLFIPLEIPI--SKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITT 78 (737)
Q Consensus 1 lr~kgEt~eEl~g~~~a~~~~~~~~~~~~--~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs 78 (737)
||+||||+||++||++||+++..+++.+. ...+|+|||||||. |+||++|+++|++|+||+|||||+.++++|+
T Consensus 43 l~~kGeT~eEi~g~t~Am~~~~~~l~~~~~~~~~vD~~gTGGdG~----~iSt~~a~ivAa~Gv~VaKhgnR~lss~~GT 118 (405)
T TIGR02644 43 IYFNGMTDEETAYLTKAMIDSGEVLDLSSLPGPKVDKHSTGGVGD----KVSLVLGPIVAACGVKVAKMSGRGLGHTGGT 118 (405)
T ss_pred HHHcCCCHHHHHHHHHHHHHhCCcCCCcccCCCeeEEeCCCCCCC----CchHHHHHHHHhCCCCEEeeCCCCCCCcchH
Confidence 58999999999999999999998776542 34799999999998 4899999999999999999999999999999
Q ss_pred HHHHHHcC-CCCcCCHHHHHHHHHhCCeEeEecc-cccHHHHHHHHHHhHcCCCCchhhHHHhhcCCCCCC---------
Q psy9403 79 YEILKKLG-YFAVSSKKKAIKYLKLKRLVFMDIS-ILIPELSKLLEIYYMLGIRNSSHLLVKIIQPLSIPA--------- 147 (737)
Q Consensus 79 ~dvl~~lG-i~~~~~~~~~~~~l~~~g~~fl~~~-~~~p~l~~l~~~R~~lg~Rt~~~t~~~ll~Pl~~p~--------- 147 (737)
+|+||+|| ++++++++++.++++++||+|++++ +|||+++.|.++|++++ | |+++ ||.++.
T Consensus 119 aD~LE~lgG~~v~ls~e~~~~~l~~~G~~fl~~~~~l~PAdk~l~~lRd~~~--T----v~si--pLi~aSimSKK~A~G 190 (405)
T TIGR02644 119 IDKLESIPGFRTELSEAEFIEIVNKVGLAIIGQTKDLAPADKKLYALRDVTG--T----VDSI--PLIASSIMSKKLAAG 190 (405)
T ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHcCeEEecCccccCcchhHHHHHhhccc--c----cCcH--HHHHHHHHHHHHhcC
Confidence 99999999 9999999999999999999999999 99999999999999999 5 8887 776643
Q ss_pred --ceEEEe--------eCcccHHHHHHHHhhccCCCeEE--EEEeCCCceeecCCCCcEEEEEeeCCeEEEEcCCCCCCc
Q psy9403 148 --LRLVSY--------THPEYLKILSDYFYNEKSLGDIF--LMQGTEGEVIPNICNSKQIIHWFHDNKYTKLTKEQNKEI 215 (737)
Q Consensus 148 --~~v~Gv--------~h~~~~~~~~~~~~~~~g~~~~~--vv~G~eG~de~s~~~~t~~~~~~~~g~~~~~~p~~~g~~ 215 (737)
.+|++| ++.+....+++.+.. +|....+ ++.. .++||+ +|..
T Consensus 191 ~~~~vlDVk~G~gAfm~~~e~a~~LA~~~~~-~g~~~g~~~~a~~-t~md~p------------------------lG~~ 244 (405)
T TIGR02644 191 ADAIVLDVKVGSGAFMKTLEDAKELAKLMVE-IGKGAGRKTSALL-TDMNQP------------------------LGRA 244 (405)
T ss_pred CCeEEEeecccCCCCcCCHHHHHHHHHHHHH-HHHHcCCeEEEEe-cCCCcc------------------------ccCC
Confidence 289999 999999999999876 6533222 2222 346664 2222
Q ss_pred CCCCCCCHHHHHHHHHHHHcCCCCCch--hhhhhhcccccccccccCcchhhhhhcCCCCCCCHHHHHHHHHHHhhCCCC
Q psy9403 216 SFPKNSNINDNVLWIQSVLDNKLPIPS--TIINQVKNCILISQKNIHPLNIARSILLEPFDLDEKILLKILGNMFKNKVD 293 (737)
Q Consensus 216 ~~~~~~~~~~~a~~~~~vl~G~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~a~~~g~~ 293 (737)
- +++.+ ++-..++|+|+.+... .+..|++.+|+.+|++-+ ...+.+.+.+-.. |=+.+++.-+....+|.+
T Consensus 245 i----GnalE-v~Eai~~L~g~~p~dl~e~~~~la~~~L~~~g~a~~-~~~g~~~a~~~l~-sG~Al~kf~~~v~aQGG~ 317 (405)
T TIGR02644 245 I----GNALE-VKEAVEFLKGEGPADLKELTLALAAEMLLLAGIAKT-EKEARALAEDVLE-SGKALEKFRRFVEAQGGD 317 (405)
T ss_pred C----CChhh-HHHHHHHHCCCCcHHHHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh-CcHHHHHHHHHHHHhCCC
Confidence 1 11122 2233889999844432 477899999999999877 4555554444222 123344444555556765
No 18
>PRK04350 thymidine phosphorylase; Provisional
Probab=99.96 E-value=1.1e-29 Score=279.83 Aligned_cols=251 Identities=12% Similarity=0.003 Sum_probs=196.2
Q ss_pred CcccCCCHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHHH
Q psy9403 1 MRIKGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYE 80 (737)
Q Consensus 1 lr~kgEt~eEl~g~~~a~~~~~~~~~~~~~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~d 80 (737)
+++||||.||++|+++||+++..+++.+....+|+|||||||.++ +|+ .+++++|++|++|.|||||+.+|++|++|
T Consensus 123 l~~kG~t~~Ei~~lt~AM~~~g~~l~~~~~~~vDkhgTGGd~g~t-~S~--~~apivAA~Gv~VaKhgnRaiss~sGTaD 199 (490)
T PRK04350 123 SAINGLDMDEIEALTRAMVETGERLDWDRPPVVDKHSIGGVPGNR-TTL--IVVPIVAAAGLTIPKTSSRAITSPAGTAD 199 (490)
T ss_pred HHHcCCCHHHHHHHHHHHHHhCCcccCCCCCeEEecCCCCCCCCC-EeH--HHHHHHHhCCCceeeecCCCCCCCCchHH
Confidence 478999999999999999999988865544579999999999998 544 46777799999999999999999999999
Q ss_pred HHHHcCCCCcCCHHHHHHHHHhCCeEeEe--cccccHHHHHHHHHHhHcCCCCchhhHHHhhcCCCC-------------
Q psy9403 81 ILKKLGYFAVSSKKKAIKYLKLKRLVFMD--ISILIPELSKLLEIYYMLGIRNSSHLLVKIIQPLSI------------- 145 (737)
Q Consensus 81 vl~~lGi~~~~~~~~~~~~l~~~g~~fl~--~~~~~p~l~~l~~~R~~lg~Rt~~~t~~~ll~Pl~~------------- 145 (737)
+||+|| +++++++++.+++++.|+||+| +|+|||+++++.++|+.|+++| +++|++|+.+
T Consensus 200 ~LEaLg-~v~ls~e~~~~~l~~~G~~flfG~a~~l~PAdk~l~~vR~~l~vds----~~li~aSImSKKlA~G~~~lvlD 274 (490)
T PRK04350 200 TMEVLA-PVDLSVEEIKRVVEKVGGCLVWGGAVNLSPADDILIRVERPLSIDP----RGQLVASILSKKIAAGSTHVVID 274 (490)
T ss_pred HHHHhh-cCCCCHHHHHHHHHHcCEEEEECCccccCHHHHHHHHHhhhcCCCc----HHHHHHHHhhhHhhcCCCceEEe
Confidence 999999 9999999999999999999999 9999999999999999999999 8888888888
Q ss_pred -CCc--eEEEeeCcccHHHHHHHHhhccCCCeEEEEEeCCCceeecCCCCcEEEEEeeCCeEEEEcCCCCCCcCCCCCCC
Q psy9403 146 -PAL--RLVSYTHPEYLKILSDYFYNEKSLGDIFLMQGTEGEVIPNICNSKQIIHWFHDNKYTKLTKEQNKEISFPKNSN 222 (737)
Q Consensus 146 -p~~--~v~Gv~h~~~~~~~~~~~~~~~g~~~~~vv~G~eG~de~s~~~~t~~~~~~~~g~~~~~~p~~~g~~~~~~~~~ 222 (737)
|+. .. +++++..+.+++.|.. +|....+.+ |+.++.-+ .|-.+++.
T Consensus 275 Vp~G~ga~--v~~~~~A~~LA~~~~~-vg~~~g~~v-------~a~lTd~~--------------qPlG~~iG------- 323 (490)
T PRK04350 275 IPVGPTAK--VRSVEEARRLARLFEE-VGDRLGLRV-------ECAITDGS--------------QPIGRGIG------- 323 (490)
T ss_pred cccCCCCc--CCCHHHHHHHHHHHHH-HHHhcCCeE-------EEEECCCC--------------eehhccCC-------
Confidence 543 12 7899999999999977 664433333 33333322 12223333
Q ss_pred HHHHHHHHHHHHcCCCCCch----hhhhhhcccccccccccCcchhhhhhcCCCCCCCHHHHHHHHHHHhhCCCC
Q psy9403 223 INDNVLWIQSVLDNKLPIPS----TIINQVKNCILISQKNIHPLNIARSILLEPFDLDEKILLKILGNMFKNKVD 293 (737)
Q Consensus 223 ~~~~a~~~~~vl~G~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~a~~~g~~ 293 (737)
+..+++...++|+|+..+|. ....+++.+|..+|+. + .....+.+.+..+ |=..+++.-+....+|.+
T Consensus 324 nalEv~e~l~vL~g~~~gp~dl~e~~l~lA~~~L~~~g~~-~-~~~g~~~a~~~L~-sG~Al~kf~~ii~aQGG~ 395 (490)
T PRK04350 324 PALEARDVLAVLENDPDAPNDLREKSLRLAGILLEMGGVA-P-GGEGYALAREILE-SGKALEKFQEIIEAQGGD 395 (490)
T ss_pred chHHHHHHHHHhCCCCCCCHhHHHHHHHHHHHHHHhcCCC-C-HHHHHHHHHHHHh-CcHHHHHHHHHHHHcCCC
Confidence 78899999999999533453 3668889999999987 4 4444444333322 223345555555557776
No 19
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=99.91 E-value=2.8e-24 Score=235.41 Aligned_cols=125 Identities=16% Similarity=0.067 Sum_probs=116.4
Q ss_pred CcccCCCHHHHHHHHHHHHhcCCCCCCC----CCCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCC
Q psy9403 1 MRIKGESVEEISGFLNAINSLFIPLEIP----ISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRI 76 (737)
Q Consensus 1 lr~kgEt~eEl~g~~~a~~~~~~~~~~~----~~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~ 76 (737)
+|+||||+||++||++||+++..+++.+ ....+|+|||||||+ |+||.+|+++|++|+||+|||||+.++++
T Consensus 46 l~~kG~t~eEi~~lt~Am~~sg~~i~~~~~d~~~~~vDkhgTGGdG~----niS~~~a~ivAa~Gv~VaKhg~R~lss~~ 121 (440)
T PRK05820 46 IFFNGMTRPERVALTLAMRDSGEVLDWSSLNLNGPIVDKHSTGGVGD----KISLMLAPMVAACGGYVPMISGRGLGHTG 121 (440)
T ss_pred HHHcCCCHHHHHHHHHHHHHhCCcCCCccccCCCCeEEEcCCCCCCc----cHHHHHHHHHHhCCCCEEeeCCCCCCCcc
Confidence 5899999999999999999999877543 234699999999998 88999999999999999999999999999
Q ss_pred cHHHHHHHc-CCCCcCCHHHHHHHHHhCCeEeEecc-cccHHHHHHHHHHhHcCC
Q psy9403 77 TTYEILKKL-GYFAVSSKKKAIKYLKLKRLVFMDIS-ILIPELSKLLEIYYMLGI 129 (737)
Q Consensus 77 gs~dvl~~l-Gi~~~~~~~~~~~~l~~~g~~fl~~~-~~~p~l~~l~~~R~~lg~ 129 (737)
|++|+||+| |++++.+++++.++|+++|++|++++ .|||+++++.++|+..+.
T Consensus 122 GTaD~LE~LpG~~v~ls~e~~~~~l~~~G~~~~~~~~~l~PAdk~l~~lRdvt~t 176 (440)
T PRK05820 122 GTLDKLEAIPGYRAFPSNDRFREILKDVGVAIIGQTSDLAPADKRLYALRDVTAT 176 (440)
T ss_pred cHHHHHHhCCCCCCCCCHHHHHHHHHHcCeEEEcCchhcChHHHHHHHHhcccCC
Confidence 999999999 99999999999999999999999999 999999999999987654
No 20
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=99.90 E-value=2.7e-23 Score=229.05 Aligned_cols=127 Identities=13% Similarity=0.048 Sum_probs=118.5
Q ss_pred CcccCCCHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHHH
Q psy9403 1 MRIKGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYE 80 (737)
Q Consensus 1 lr~kgEt~eEl~g~~~a~~~~~~~~~~~~~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~d 80 (737)
+++||||.+|++|+++||+++..+++.+....+|+||||||+.++ +|++ ++.++|++|++|.|||||+.+|++|++|
T Consensus 128 l~~kG~t~~Ei~~lt~AM~~sg~~l~~~~~~~vDkhgTGGd~gnk-~ni~--~apIvAA~Gv~VaKhsnRaits~sGTAD 204 (493)
T TIGR02645 128 SAINGMTMDEIEALTIAMADTGEMLEWDREPIMDKHSIGGVPGNK-TSLI--VVPIVAAAGLLIPKTSSRAITSAAGTAD 204 (493)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCccCCCCCeEEEeCCCCCCCCC-EeHH--HHHHHHhCCCCeeeeCCCCcCCCccHHH
Confidence 478999999999999999999988865544579999999999999 7885 5666699999999999999999999999
Q ss_pred HHHHcCCCCcCCHHHHHHHHHhCCeEeEe--cccccHHHHHHHHHHhHcCCCC
Q psy9403 81 ILKKLGYFAVSSKKKAIKYLKLKRLVFMD--ISILIPELSKLLEIYYMLGIRN 131 (737)
Q Consensus 81 vl~~lGi~~~~~~~~~~~~l~~~g~~fl~--~~~~~p~l~~l~~~R~~lg~Rt 131 (737)
+||+|| +++++++++.+++++.|+||+| +++|||+++++.++|+.|++.|
T Consensus 205 ~LE~Lg-~v~ls~e~~~~~ve~~G~~fl~G~a~~l~PAdk~i~~vR~~l~vds 256 (493)
T TIGR02645 205 TMEVLT-RVALSAEEIKRIVEKVGGCLVWGGALNLAPADDVLIRVERPLSIDP 256 (493)
T ss_pred HHHHhc-CCCCCHHHHHHHHHHCCEEEEECCCcccCHHHHHHHHHHhhcCCCc
Confidence 999999 9999999999999999999999 9999999999999999999999
No 21
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=99.88 E-value=6.3e-23 Score=223.49 Aligned_cols=122 Identities=13% Similarity=0.005 Sum_probs=114.3
Q ss_pred CcccCCCHHHHHHHHHHHHhcCCCCCCC----CCCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCC
Q psy9403 1 MRIKGESVEEISGFLNAINSLFIPLEIP----ISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRI 76 (737)
Q Consensus 1 lr~kgEt~eEl~g~~~a~~~~~~~~~~~----~~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~ 76 (737)
+++||||.+|++++++||+++..+++.+ ....+|+|||||||. |+||++|+++|++|++|+|||||+.+|++
T Consensus 45 l~~kG~t~~Ei~~lt~aM~~sg~~i~~~~~~~~~~~vDkhgTGGdG~----niSt~~apivAA~Gv~VaKhgnR~iss~~ 120 (437)
T TIGR02643 45 VFFNGMNRDERVALTLAMRDSGDVLDWRSLDLNGPVVDKHSTGGVGD----VVSLMLGPIVAACGGYVPMISGRGLGHTG 120 (437)
T ss_pred HHHcCCCHHHHHHHHHHHHHhCCcccCcccccCCCeeEecCCCCCCc----chhHHHHHHHHhCCCCeeeecCCCcCCCC
Confidence 4789999999999999999999887654 134799999999988 79999999999999999999999999999
Q ss_pred cHHHHHHHc-CCCCcCCHHHHHHHHHhCCeEeEe-cccccHHHHHHHHHHhH
Q psy9403 77 TTYEILKKL-GYFAVSSKKKAIKYLKLKRLVFMD-ISILIPELSKLLEIYYM 126 (737)
Q Consensus 77 gs~dvl~~l-Gi~~~~~~~~~~~~l~~~g~~fl~-~~~~~p~l~~l~~~R~~ 126 (737)
|++|+||+| |++++++++++.++|++.|++|+. ++.+||+++.+.++|..
T Consensus 121 GTaD~LEalpG~~v~ls~e~~~~~l~~~g~~f~gqa~~l~PADk~ly~lRDv 172 (437)
T TIGR02643 121 GTLDKLEAIPGYDIFPDPALFRRVVKDVGVAIIGQTADLAPADKRFYATRDV 172 (437)
T ss_pred chHHHHHhCCCCCCCCCHHHHHHHHHHcCceEEccCCCcCcchhceeeeeee
Confidence 999999999 999999999999999999999998 99999999999999954
No 22
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=99.86 E-value=8.4e-22 Score=217.20 Aligned_cols=127 Identities=12% Similarity=0.073 Sum_probs=116.2
Q ss_pred CcccCCCHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHHH
Q psy9403 1 MRIKGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYE 80 (737)
Q Consensus 1 lr~kgEt~eEl~g~~~a~~~~~~~~~~~~~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~d 80 (737)
+++||+|.+|++++++||+++..+++.+....+|+|||||||.++ +|++ ++.++|++|++|.|||||+.+|++|++|
T Consensus 129 l~~kG~t~~Eia~lt~AM~~sg~~l~~~~~~vvDkhgTGGd~gnk-~nl~--~apIVAA~Gv~VaKhsnRaits~sGTaD 205 (500)
T TIGR03327 129 SYINGMDMDEIEWLTRAMAETGDMLSFDRHPIMDKHSIGGVPGNK-ISLL--VVPIVAAAGLTIPKTSSRAITSAAGTAD 205 (500)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcccCCCCCeEEEeCCCCCCCCC-EEHH--HHHHHHhCCCCeeeeCCCCcCCCccHHH
Confidence 478999999999999999999988765544579999999999999 7885 4666699999999999999999999999
Q ss_pred HHHHcCCCCcCCHHHHHHHHHhCCeEeEe--cccccHHHHHHHHHHhHcCCCC
Q psy9403 81 ILKKLGYFAVSSKKKAIKYLKLKRLVFMD--ISILIPELSKLLEIYYMLGIRN 131 (737)
Q Consensus 81 vl~~lGi~~~~~~~~~~~~l~~~g~~fl~--~~~~~p~l~~l~~~R~~lg~Rt 131 (737)
+||+|+ +++++++++.+++++.|+||++ +|+|||+++++..+|+.+.+.+
T Consensus 206 ~LEsL~-~v~ls~e~~~~~v~~~G~~fl~Gqa~~l~PAdk~l~alrdt~tvds 257 (500)
T TIGR03327 206 VMEVLA-PVEFSADEIKRIVEKTGGCLVWGGATNLAPADDKIIKVERPLSIDP 257 (500)
T ss_pred HHHHhh-CCCCCHHHHHHHHHHCCEEEEECCccccCHHHHHHHHhccccCCCc
Confidence 999995 9999999999999999999999 9999999999999999777777
No 23
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=97.72 E-value=6.6e-05 Score=81.32 Aligned_cols=125 Identities=17% Similarity=0.133 Sum_probs=107.8
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCCCCCC--CCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHHH
Q psy9403 3 IKGESVEEISGFLNAINSLFIPLEIPI--SKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYE 80 (737)
Q Consensus 3 ~kgEt~eEl~g~~~a~~~~~~~~~~~~--~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~d 80 (737)
++|-|.+|++.+..||++.-..++... ...+|---|||=|-+ +|..++-++|+||++|.|--+|+..+..|+.|
T Consensus 48 f~gM~~~E~~~lT~AMv~SGe~ld~~~~~~~~vDKHStGGVgdk----~sL~l~PiVAA~Gl~VpK~SgRgLghtGGT~D 123 (435)
T COG0213 48 FRGMTMDEIAALTMAMVDSGEVLDLSDIPGPVVDKHSTGGVGDK----TSLILVPIVAAAGLPVPKMSGRGLGHTGGTLD 123 (435)
T ss_pred HcCCCHHHHHHHHHHHHhcCCEEeeccCCCceecccCCCCCCcc----cchhHHHHHHhcCCcccccccCccccCccchh
Confidence 589999999999999999876554321 245777788988833 46777888999999999999999888889999
Q ss_pred HHHHc-CCCCcCCHHHHHHHHHhCCeEeEecc-cccHHHHHHHHHHhHcC-CCC
Q psy9403 81 ILKKL-GYFAVSSKKKAIKYLKLKRLVFMDIS-ILIPELSKLLEIYYMLG-IRN 131 (737)
Q Consensus 81 vl~~l-Gi~~~~~~~~~~~~l~~~g~~fl~~~-~~~p~l~~l~~~R~~lg-~Rt 131 (737)
-||.+ |+++..+.++..+++.+.|++-+-+. ++.|+=++|..+|..++ +-+
T Consensus 124 klEsi~g~~~~~~e~~fi~~~~~~g~aiiGqs~~LaPADkklyalrdvtaTVds 177 (435)
T COG0213 124 KLESIPGVNLELDEIKFIEQVKDNGVAIIGQSGNLAPADKKLYALRDVTATVDS 177 (435)
T ss_pred hhhccCCcccCcCHHHHHHHhhcCCeEEEeCcCCcCcccceeEEeeeccccCCc
Confidence 99999 99999999999999999999999887 99999999999999888 555
No 24
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=96.37 E-value=0.0013 Score=54.13 Aligned_cols=22 Identities=45% Similarity=0.755 Sum_probs=17.6
Q ss_pred CcccCCCHHHHHHHHHHHHhcC
Q psy9403 1 MRIKGESVEEISGFLNAINSLF 22 (737)
Q Consensus 1 lr~kgEt~eEl~g~~~a~~~~~ 22 (737)
||+||||+|||+||++||++++
T Consensus 44 l~~kget~~Eiag~~~am~~~a 65 (66)
T PF02885_consen 44 LRMKGETPEEIAGFAKAMREHA 65 (66)
T ss_dssp HHHH---HHHHHHHHHHHHHTS
T ss_pred HHHhCcCHHHHHHHHHHHHHhc
Confidence 5899999999999999999985
No 25
>KOG3220|consensus
Probab=55.13 E-value=10 Score=38.24 Aligned_cols=76 Identities=20% Similarity=0.141 Sum_probs=46.3
Q ss_pred CCCCCcHHHHHHHcCCCCcCCHHHHHHHHHhCCeEeEecccccHHHHHHHH---------HHhHcCCCCchhhHHHhhcC
Q psy9403 72 NFGRITTYEILKKLGYFAVSSKKKAIKYLKLKRLVFMDISILIPELSKLLE---------IYYMLGIRNSSHLLVKIIQP 142 (737)
Q Consensus 72 ~~~~~gs~dvl~~lGi~~~~~~~~~~~~l~~~g~~fl~~~~~~p~l~~l~~---------~R~~lg~Rt~~~t~~~ll~P 142 (737)
.+|||+...+|+++|+++ .+.+..++..-+.| .|.|-+-...... =|+.||.+=
T Consensus 11 atGKStVs~~f~~~G~~v-IDaD~vaR~vv~PG-----~p~~~~ive~FG~eiLl~~G~inR~~LG~~v----------- 73 (225)
T KOG3220|consen 11 ATGKSTVSQVFKALGIPV-IDADVVAREVVEPG-----TPAYRRIVEAFGTEILLEDGEINRKVLGKRV----------- 73 (225)
T ss_pred ccChHHHHHHHHHcCCcE-ecHHHHHHHHhcCC-----ChHHHHHHHHhCceeeccCCcccHHHHhHHH-----------
Confidence 589999999999999998 45555555444444 2222222222211 256666665
Q ss_pred CCCCCc--eEEEeeCcccHHHHHH
Q psy9403 143 LSIPAL--RLVSYTHPEYLKILSD 164 (737)
Q Consensus 143 l~~p~~--~v~Gv~h~~~~~~~~~ 164 (737)
+++|.. .+.+..||.....|.+
T Consensus 74 F~~~~~r~~Ln~IthP~Ir~em~k 97 (225)
T KOG3220|consen 74 FSDPKKRQALNKITHPAIRKEMFK 97 (225)
T ss_pred hCCHHHHHHHHhcccHHHHHHHHH
Confidence 455542 6788889887665553
No 26
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=52.30 E-value=21 Score=36.70 Aligned_cols=55 Identities=18% Similarity=0.248 Sum_probs=38.3
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHHHHH
Q psy9403 3 IKGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYEIL 82 (737)
Q Consensus 3 ~kgEt~eEl~g~~~a~~~~~~~~~~~~~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~dvl 82 (737)
+.||+.- .++.+|++.=+.-++ +| ||.|-| |.||+.||..- ++++.-.||+
T Consensus 26 l~~~ss~--e~y~~aL~~GcR~vE------lD-~wdg~d-------------------gePvV~Hg~tl-ts~i~f~dv~ 76 (229)
T cd08627 26 FSSESSL--EAYARCLRMGCRCIE------LD-CWDGPD-------------------GMPVIYHGHTL-TTKIKFSDVL 76 (229)
T ss_pred cCCcccH--HHHHHHHHhCCCEEE------EE-eecCCC-------------------CCEEEEeCCcC-CCceEHHHHH
Confidence 3455544 488999987665543 55 687665 68999999755 4558888888
Q ss_pred HHcC
Q psy9403 83 KKLG 86 (737)
Q Consensus 83 ~~lG 86 (737)
++..
T Consensus 77 ~~I~ 80 (229)
T cd08627 77 HTIK 80 (229)
T ss_pred HHHH
Confidence 8653
No 27
>PRK09071 hypothetical protein; Validated
Probab=51.07 E-value=7.5 Score=42.31 Aligned_cols=71 Identities=11% Similarity=0.153 Sum_probs=50.5
Q ss_pred CcHHHHHHHcCCCCcC------CHH--HHHHHHHhCCeEeEecc--------------cccHHHHHHHHHHhHcCCC--C
Q psy9403 76 ITTYEILKKLGYFAVS------SKK--KAIKYLKLKRLVFMDIS--------------ILIPELSKLLEIYYMLGIR--N 131 (737)
Q Consensus 76 ~gs~dvl~~lGi~~~~------~~~--~~~~~l~~~g~~fl~~~--------------~~~p~l~~l~~~R~~lg~R--t 131 (737)
..++=++.++|+++.. +.. ..++.|+..|+-+-..| .|.|.++ =.+++.+.+| .
T Consensus 96 ~~~a~vlA~~G~~V~kHGnr~~ssk~g~saDvLeaLGv~~~~~~~~~~~~l~~~g~~fl~ap~~h--Pa~~~~~~~R~~l 173 (323)
T PRK09071 96 LLAAKLLAQNGYRVLLHGGGGHTAGRLYTEQLLEALGIPIARSWQEAEQALEEHNIAYLPLEDFA--PQLQRMIDLRNTL 173 (323)
T ss_pred HHHHHHHHHCCCeEEEECCCCCCCCcccHHHHHHHCCCCCCCCHHHHHHHHHhcCeEEeehHHhC--hHHHHHHHHHHHh
Confidence 5788899999998753 223 38999999999874332 1334333 3455555565 5
Q ss_pred chhhHHHhhcCCCCCCc
Q psy9403 132 SSHLLVKIIQPLSIPAL 148 (737)
Q Consensus 132 ~~~t~~~ll~Pl~~p~~ 148 (737)
-+-|+||+|+||.||+.
T Consensus 174 g~RT~fN~lgpL~NPa~ 190 (323)
T PRK09071 174 GLRSPINTLARLLNPLN 190 (323)
T ss_pred CCCCHHHHHHHHcCcCC
Confidence 56899999999999983
No 28
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=49.16 E-value=25 Score=36.78 Aligned_cols=55 Identities=13% Similarity=0.189 Sum_probs=37.5
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHHHHH
Q psy9403 3 IKGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYEIL 82 (737)
Q Consensus 3 ~kgEt~eEl~g~~~a~~~~~~~~~~~~~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~dvl 82 (737)
+.|++..| +..+|++.-+.-++ +| ||.|-| |-||+.||... ++++.-.||+
T Consensus 26 l~~~ss~e--~y~~aL~~GcRcvE------lD-~Wdg~~-------------------~eP~V~HG~tl-ts~i~f~~v~ 76 (254)
T cd08633 26 LMSQSRVD--MYAWVLQAGCRCVE------VD-CWDGPD-------------------GEPIVHHGYTL-TSKILFKDVI 76 (254)
T ss_pred cCCccCHH--HHHHHHHcCCcEEE------EE-eecCCC-------------------CCcEEeeCCCc-ccCcCHHHHH
Confidence 34555433 88888877665443 56 687765 57999999755 4558888887
Q ss_pred HHcC
Q psy9403 83 KKLG 86 (737)
Q Consensus 83 ~~lG 86 (737)
++..
T Consensus 77 ~~I~ 80 (254)
T cd08633 77 ETIN 80 (254)
T ss_pred HHHH
Confidence 7543
No 29
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=48.85 E-value=25 Score=36.09 Aligned_cols=55 Identities=15% Similarity=0.206 Sum_probs=37.7
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHHHHH
Q psy9403 3 IKGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYEIL 82 (737)
Q Consensus 3 ~kgEt~eEl~g~~~a~~~~~~~~~~~~~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~dvl 82 (737)
+.|++..| +..+|++.-+.-++ +| ||.|-| |-||+.||.. .++++.-.||+
T Consensus 26 l~~~ss~e--~Y~~aL~~GcRcvE------lD-~wdg~~-------------------~ePvV~HG~t-lts~i~f~dv~ 76 (227)
T cd08594 26 LLSQSRVD--MYARVLQAGCRCVE------VD-CWDGPD-------------------GEPVVHHGYT-LTSKILFRDVI 76 (227)
T ss_pred ccCcccHH--HHHHHHHhCCcEEE------EE-eecCCC-------------------CCcEEeeCCC-cccCcCHHHHH
Confidence 45555543 78888877665443 55 687654 5799999975 44558888888
Q ss_pred HHcC
Q psy9403 83 KKLG 86 (737)
Q Consensus 83 ~~lG 86 (737)
++..
T Consensus 77 ~aI~ 80 (227)
T cd08594 77 ETIN 80 (227)
T ss_pred HHHH
Confidence 7654
No 30
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=47.67 E-value=26 Score=36.79 Aligned_cols=55 Identities=22% Similarity=0.381 Sum_probs=37.2
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHHHHH
Q psy9403 3 IKGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYEIL 82 (737)
Q Consensus 3 ~kgEt~eEl~g~~~a~~~~~~~~~~~~~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~dvl 82 (737)
+.|++..| +..+|++.=+.-++ +| ||.|-| |-||+.||... ++++.-.||+
T Consensus 26 l~~~ss~e--~y~~aL~~GcRcvE------lD-~wdg~~-------------------~eP~V~HG~tl-ts~i~f~~v~ 76 (258)
T cd08631 26 LRGQSSVE--GYIRALKRGCRCVE------VD-VWDGPN-------------------GEPIVYHGHTF-TSKILFKDVV 76 (258)
T ss_pred ccCccCHH--HHHHHHHcCCcEEE------EE-eecCCC-------------------CCcEEeeCCcc-cCCcCHHHHH
Confidence 35566554 78888877665443 55 687644 67999999754 4557888887
Q ss_pred HHcC
Q psy9403 83 KKLG 86 (737)
Q Consensus 83 ~~lG 86 (737)
++..
T Consensus 77 ~~Ik 80 (258)
T cd08631 77 AAVA 80 (258)
T ss_pred HHHH
Confidence 7543
No 31
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=47.66 E-value=27 Score=35.96 Aligned_cols=54 Identities=15% Similarity=0.124 Sum_probs=36.8
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHHHHHH
Q psy9403 4 KGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYEILK 83 (737)
Q Consensus 4 kgEt~eEl~g~~~a~~~~~~~~~~~~~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~dvl~ 83 (737)
.|++..| ++++|++.-+.-++ +| ||+|.+ |-|++.||... ++++.-.|+|+
T Consensus 27 ~~~ss~~--~y~~aL~~GcRcvE------lD-~Wdg~~-------------------~ep~V~HG~t~-ts~i~f~dvl~ 77 (228)
T cd08599 27 SSRSSTA--PIIEALLRGCRVIE------LD-LWPGGR-------------------GDICVLHGGTL-TKPVKFEDCIK 77 (228)
T ss_pred CCccCHH--HHHHHHHhCCCEEE------EE-eecCCC-------------------CCeEEEeCCCC-cCCcCHHHHHH
Confidence 4444434 58899987765553 56 688754 68999999764 44577778777
Q ss_pred HcC
Q psy9403 84 KLG 86 (737)
Q Consensus 84 ~lG 86 (737)
++.
T Consensus 78 ~I~ 80 (228)
T cd08599 78 AIK 80 (228)
T ss_pred HHH
Confidence 554
No 32
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=46.13 E-value=29 Score=36.31 Aligned_cols=55 Identities=20% Similarity=0.293 Sum_probs=37.2
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHHHHH
Q psy9403 3 IKGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYEIL 82 (737)
Q Consensus 3 ~kgEt~eEl~g~~~a~~~~~~~~~~~~~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~dvl 82 (737)
+.|++..| +..+|++.-+.-++ +| ||.|-| |-||+.||... ++++.-.||+
T Consensus 26 l~~~ss~~--~y~~aL~~GcRcvE------lD-~wdG~~-------------------~eP~V~HG~tl-ts~i~f~dv~ 76 (254)
T cd08596 26 LKGESSVE--LYSQVLLTGCRCVE------LD-CWDGDD-------------------GMPIIYHGHTL-TTKIPFKDVV 76 (254)
T ss_pred cCCccCHH--HHHHHHHcCCcEEE------EE-eecCCC-------------------CCcEEeeCCCc-ccCcCHHHHH
Confidence 34555443 78888876665443 55 687655 57999999754 5568888887
Q ss_pred HHcC
Q psy9403 83 KKLG 86 (737)
Q Consensus 83 ~~lG 86 (737)
++..
T Consensus 77 ~~I~ 80 (254)
T cd08596 77 EAIN 80 (254)
T ss_pred HHHH
Confidence 7544
No 33
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=44.86 E-value=31 Score=36.01 Aligned_cols=55 Identities=16% Similarity=0.231 Sum_probs=37.1
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHHHHH
Q psy9403 3 IKGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYEIL 82 (737)
Q Consensus 3 ~kgEt~eEl~g~~~a~~~~~~~~~~~~~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~dvl 82 (737)
+.|++..| +..+|++.=+.-++ +| ||.|-| |-||+.||.. .++++.-.||+
T Consensus 26 l~~~ss~e--~y~~aL~~GcRcvE------lD-~Wdg~~-------------------~eP~V~HG~T-lts~i~f~dv~ 76 (253)
T cd08632 26 LLSQSKVD--MYARVLQAGCRCVE------VD-CWDGPD-------------------GEPVVHHGYT-LTSKITFRDVI 76 (253)
T ss_pred ccCcccHH--HHHHHHHcCCcEEE------EE-eecCCC-------------------CCcEEeeCCC-CccCcCHHHHH
Confidence 34555444 78888877665443 56 687744 5799999964 45668888888
Q ss_pred HHcC
Q psy9403 83 KKLG 86 (737)
Q Consensus 83 ~~lG 86 (737)
++..
T Consensus 77 ~aI~ 80 (253)
T cd08632 77 ETIN 80 (253)
T ss_pred HHHH
Confidence 7543
No 34
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=43.72 E-value=12 Score=33.23 Aligned_cols=69 Identities=26% Similarity=0.167 Sum_probs=48.0
Q ss_pred ccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHHHHHHHcCCCCcC-----CHHHHHHHHHh
Q psy9403 33 APIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYEILKKLGYFAVS-----SKKKAIKYLKL 102 (737)
Q Consensus 33 ~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~dvl~~lGi~~~~-----~~~~~~~~l~~ 102 (737)
+|++|+=|+|..- ++=..-+---|.+.|.|++..-|.+..++....+-|+.+|+++.. +...+++.|.+
T Consensus 3 ~D~dGvl~~g~~~-ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts~~~~~~~l~~ 76 (101)
T PF13344_consen 3 FDLDGVLYNGNEP-IPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIITSGMAAAEYLKE 76 (101)
T ss_dssp EESTTTSEETTEE--TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEEHHHHHHHHHHH
T ss_pred EeCccEeEeCCCc-CcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEChHHHHHHHHHh
Confidence 5777888888776 555555556667889999999999877767788888999998754 23455566665
No 35
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=42.43 E-value=36 Score=35.79 Aligned_cols=55 Identities=20% Similarity=0.331 Sum_probs=37.0
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHHHHH
Q psy9403 3 IKGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYEIL 82 (737)
Q Consensus 3 ~kgEt~eEl~g~~~a~~~~~~~~~~~~~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~dvl 82 (737)
+.|++..| +..+|++.-+.-++ +| ||.|-| |-||+.||... ++++.-.||+
T Consensus 26 l~~~ss~~--~y~~aL~~GcRcvE------lD-~wdg~~-------------------~eP~v~HG~t~-t~~i~f~~v~ 76 (257)
T cd08593 26 LKGPSSTE--AYIRALKKGCRCVE------LD-CWDGPD-------------------GEPIIYHGHTL-TSKILFKDVI 76 (257)
T ss_pred ccCCccHH--HHHHHHHhCCcEEE------EE-eecCCC-------------------CCcEEeeCCcc-ccCcCHHHHH
Confidence 34565555 78888887665443 55 677654 47999999744 4558888887
Q ss_pred HHcC
Q psy9403 83 KKLG 86 (737)
Q Consensus 83 ~~lG 86 (737)
++..
T Consensus 77 ~~I~ 80 (257)
T cd08593 77 QAIR 80 (257)
T ss_pred HHHH
Confidence 7543
No 36
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=42.19 E-value=37 Score=35.65 Aligned_cols=55 Identities=22% Similarity=0.300 Sum_probs=36.7
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHHHHH
Q psy9403 3 IKGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYEIL 82 (737)
Q Consensus 3 ~kgEt~eEl~g~~~a~~~~~~~~~~~~~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~dvl 82 (737)
+.|++..| +..+|++.-+.-++ +| ||.|-| |-||+.||... ++++.-.||+
T Consensus 26 l~~~ss~e--~y~~aL~~GcRcvE------lD-~wdg~~-------------------~eP~V~HG~tl-ts~i~f~~v~ 76 (258)
T cd08629 26 LTGPSSTE--AYIRALCKGCRCLE------LD-CWDGPN-------------------QEPIIYHGYTF-TSKILFCDVL 76 (258)
T ss_pred cCCccCHH--HHHHHHHhCCcEEE------EE-eecCCC-------------------CCcEEeeCCCC-ccCcCHHHHH
Confidence 34555443 78888887665443 55 687654 47999999744 4557888887
Q ss_pred HHcC
Q psy9403 83 KKLG 86 (737)
Q Consensus 83 ~~lG 86 (737)
++..
T Consensus 77 ~~I~ 80 (258)
T cd08629 77 RAIR 80 (258)
T ss_pred HHHH
Confidence 7543
No 37
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=41.69 E-value=35 Score=35.21 Aligned_cols=54 Identities=20% Similarity=0.345 Sum_probs=36.8
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHHHHHH
Q psy9403 4 KGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYEILK 83 (737)
Q Consensus 4 kgEt~eEl~g~~~a~~~~~~~~~~~~~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~dvl~ 83 (737)
.|++..| +..+|++.=+.-++ +| ||.|-| |-||+.||... ++++.-.||++
T Consensus 27 ~~~ss~~--~y~~aL~~GcRcvE------lD-~wdg~~-------------------~ep~V~HG~t~-ts~i~f~dv~~ 77 (231)
T cd08598 27 AGDSSVE--GYIRALQRGCRCVE------ID-VWDGDD-------------------GEPVVTHGYTL-TSSVPFRDVCR 77 (231)
T ss_pred CCccCHH--HHHHHHHhCCcEEE------EE-eecCCC-------------------CCcEEeeCCCC-cCceEHHHHHH
Confidence 4554444 78888877665443 55 677654 77999999744 45588888887
Q ss_pred HcC
Q psy9403 84 KLG 86 (737)
Q Consensus 84 ~lG 86 (737)
+..
T Consensus 78 ~Ik 80 (231)
T cd08598 78 AIK 80 (231)
T ss_pred HHH
Confidence 654
No 38
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=40.54 E-value=37 Score=35.63 Aligned_cols=55 Identities=22% Similarity=0.277 Sum_probs=36.5
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHHHHH
Q psy9403 3 IKGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYEIL 82 (737)
Q Consensus 3 ~kgEt~eEl~g~~~a~~~~~~~~~~~~~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~dvl 82 (737)
+.|++..| +..+|++.=+.-++ +| ||.|-+ |-||+.||... ++++.-.||+
T Consensus 26 l~~~ss~~--~y~~aL~~GcRcvE------lD-~wdg~~-------------------~eP~V~HG~tl-ts~i~f~~v~ 76 (258)
T cd08630 26 IGGPSSTE--AYVRAFAQGCRCVE------LD-CWEGPG-------------------GEPVIYHGHTL-TSKILFRDVI 76 (258)
T ss_pred ccCcccHH--HHHHHHHcCCcEEE------EE-eecCCC-------------------CCcEEeeCCcc-ccceEHHHHH
Confidence 34555444 78888876665443 55 677543 57999999744 4558888887
Q ss_pred HHcC
Q psy9403 83 KKLG 86 (737)
Q Consensus 83 ~~lG 86 (737)
++..
T Consensus 77 ~~I~ 80 (258)
T cd08630 77 QAVR 80 (258)
T ss_pred HHHH
Confidence 7543
No 39
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=40.04 E-value=43 Score=35.12 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=38.4
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHHHHH
Q psy9403 3 IKGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYEIL 82 (737)
Q Consensus 3 ~kgEt~eEl~g~~~a~~~~~~~~~~~~~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~dvl 82 (737)
+.|++..| +..+|++.=+.-++ +| ||.|-++. |-||+.||... ++++.-.||+
T Consensus 26 l~g~ss~e--~y~~aL~~GcRcvE------lD-~Wdg~~~~-----------------~eP~V~HG~tl-ts~i~f~~v~ 78 (257)
T cd08591 26 FGGKSSVE--MYRQVLLSGCRCIE------LD-CWDGKGED-----------------EEPIITHGKTM-CTEILFKDVI 78 (257)
T ss_pred ccCcccHH--HHHHHHHhCCcEEE------EE-eecCCCCC-----------------CCCEEeeCCCC-ccCeEHHHHH
Confidence 34555444 88888887665443 55 67776431 68999999754 4568888888
Q ss_pred HHcC
Q psy9403 83 KKLG 86 (737)
Q Consensus 83 ~~lG 86 (737)
+++.
T Consensus 79 ~aIk 82 (257)
T cd08591 79 EAIA 82 (257)
T ss_pred HHHH
Confidence 7544
No 40
>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=38.13 E-value=42 Score=35.19 Aligned_cols=55 Identities=16% Similarity=0.321 Sum_probs=37.6
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHHHHH
Q psy9403 3 IKGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYEIL 82 (737)
Q Consensus 3 ~kgEt~eEl~g~~~a~~~~~~~~~~~~~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~dvl 82 (737)
..|++..| +..+|++.=+.-++ +| ||.|-| |-||+.||... ++++.-.||+
T Consensus 26 l~~~ss~~--~y~~aL~~GcRcvE------lD-~Wdg~~-------------------~eP~V~HG~t~-ts~i~f~dv~ 76 (254)
T cd08628 26 LRSESSTE--AYIRCLRMGCRCIE------LD-CWDGPD-------------------GKPIIYHGWTR-TTKIKFDDVV 76 (254)
T ss_pred eecCCCHH--HHHHHHHcCCcEEE------EE-eecCCC-------------------CCeEEeeCCCc-cCCcCHHHHH
Confidence 34555544 67888876665443 56 687765 47999999754 4558888888
Q ss_pred HHcC
Q psy9403 83 KKLG 86 (737)
Q Consensus 83 ~~lG 86 (737)
+++.
T Consensus 77 ~~I~ 80 (254)
T cd08628 77 QAIK 80 (254)
T ss_pred HHHH
Confidence 7654
No 41
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=35.10 E-value=50 Score=33.99 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=33.9
Q ss_pred HHHHHHHHhcCCCCCCCCCCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHHHHHHHcC
Q psy9403 12 SGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYEILKKLG 86 (737)
Q Consensus 12 ~g~~~a~~~~~~~~~~~~~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~dvl~~lG 86 (737)
.+..+|++.-+.-++ +| ||.|-+ |-||+.||....+ ++.-.||++++.
T Consensus 33 ~~y~~aL~~GcRcvE------lD-~wdg~~-------------------~eP~v~HG~t~ts-~i~f~dv~~~Ik 80 (226)
T cd08558 33 EAYIRALLRGCRCVE------LD-CWDGPD-------------------GEPVVYHGHTLTS-KILFKDVIEAIK 80 (226)
T ss_pred HHHHHHHHhCCcEEE------EE-eecCCC-------------------CCeEEeeCCCCcc-ceEHHHHHHHHH
Confidence 477888876665443 45 577654 8899999986544 478888887654
No 42
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=34.92 E-value=13 Score=40.55 Aligned_cols=72 Identities=13% Similarity=0.028 Sum_probs=52.0
Q ss_pred cHHHHHHHcCCCCcC-------CHHHHHHHHHhCCeEeEecc------------cccHHHHHHHHHHhHcCCCCchh--h
Q psy9403 77 TTYEILKKLGYFAVS-------SKKKAIKYLKLKRLVFMDIS------------ILIPELSKLLEIYYMLGIRNSSH--L 135 (737)
Q Consensus 77 gs~dvl~~lGi~~~~-------~~~~~~~~l~~~g~~fl~~~------------~~~p~l~~l~~~R~~lg~Rt~~~--t 135 (737)
.++=++.++|+++.. +..-.++.|+..|+-.-..+ .|.++=...=.+++.+.+|.-+. |
T Consensus 90 ~~a~vlA~~G~~V~kHG~r~~~s~~Gs~d~le~LGi~~~~s~~~~~~~l~~~g~~f~~~~~~~P~~~~l~~lR~~lg~rT 169 (330)
T TIGR01245 90 ASAFVAAAAGVKVAKHGNRSVSSKSGSADVLEALGVNLDLGPEKVARSLEETGIGFLFAPLYHPAMKHVAPVRRELGVRT 169 (330)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCCccHHHHHHHcCCCCCCCHHHHHHHHHHhCcEEeechhhCHHHHHHHHHHHHhCCCC
Confidence 577889999998754 23446789999998863221 23343233446678888888877 9
Q ss_pred HHHhhcCCCCCCc
Q psy9403 136 LVKIIQPLSIPAL 148 (737)
Q Consensus 136 ~~~ll~Pl~~p~~ 148 (737)
+||+|+||.||+.
T Consensus 170 ~~N~lgpL~NP~~ 182 (330)
T TIGR01245 170 VFNLLGPLTNPAR 182 (330)
T ss_pred HHHHHHHhcCCCC
Confidence 9999999999973
No 43
>PRK08136 glycosyl transferase family protein; Provisional
Probab=34.39 E-value=21 Score=38.73 Aligned_cols=70 Identities=11% Similarity=0.063 Sum_probs=50.1
Q ss_pred cHHHHHHHcCCCCcC-------CHHHHHHHHHhCCeEeEecc------------cccHHHHHHHHHHhHcCCCCc--hhh
Q psy9403 77 TTYEILKKLGYFAVS-------SKKKAIKYLKLKRLVFMDIS------------ILIPELSKLLEIYYMLGIRNS--SHL 135 (737)
Q Consensus 77 gs~dvl~~lGi~~~~-------~~~~~~~~l~~~g~~fl~~~------------~~~p~l~~l~~~R~~lg~Rt~--~~t 135 (737)
.++=|+.+.|+++.. +..-.++.|+..|+-+-..| .|.++=.+-=.+++.+.+|.- +-|
T Consensus 100 ~aA~vlA~~G~~V~kHGnr~vssk~gsadvleaLGi~~~~~~~~~~~~l~~~g~~fl~ap~~hPa~~~~~~vR~~LG~RT 179 (317)
T PRK08136 100 LLALLLAREGVPVLVHGVSEDPTRVTSAEIFEALGIPPTLHADQAQAKLAEGQPAFIPVGVLCPPLARLLALRWRMGVRN 179 (317)
T ss_pred HHHHHHHHCCCeEEEECCCCCCCcccHHHHHHHcCCCCCCCHHHHHHHHHhcCeEEEEhHHhCHHHHHHHHHHHHhCCCC
Confidence 577888999998743 34567999999999974322 233333334466777777754 589
Q ss_pred HHHhhcCCCCC
Q psy9403 136 LVKIIQPLSIP 146 (737)
Q Consensus 136 ~~~ll~Pl~~p 146 (737)
+||+|+||.||
T Consensus 180 ~fN~lgpL~NP 190 (317)
T PRK08136 180 SAHTLAKLATP 190 (317)
T ss_pred HHHHHHHhcCc
Confidence 99999999999
No 44
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=32.22 E-value=66 Score=33.22 Aligned_cols=48 Identities=17% Similarity=0.317 Sum_probs=33.9
Q ss_pred HHHHHHHHhcCCCCCCCCCCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHHHHHHHcC
Q psy9403 12 SGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYEILKKLG 86 (737)
Q Consensus 12 ~g~~~a~~~~~~~~~~~~~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~dvl~~lG 86 (737)
.++.+|++.-+.-++ +| ||.|-| |.||+.||.... +++.-.||+++..
T Consensus 33 eay~~AL~~GcR~vE------lD-vwdg~d-------------------gePvV~HG~tlt-s~i~f~dv~~~I~ 80 (229)
T cd08592 33 EAYARCLRMGCRCIE------LD-CWDGPD-------------------GMPIIYHGHTLT-SKIKFMDVLKTIK 80 (229)
T ss_pred HHHHHHHHhCCCEEE------EE-eecCCC-------------------CCEEEEeCCcCC-CCcCHHHHHHHHH
Confidence 478888876665443 55 577655 589999997654 4488888887654
No 45
>PRK10444 UMP phosphatase; Provisional
Probab=31.57 E-value=85 Score=32.72 Aligned_cols=71 Identities=10% Similarity=0.001 Sum_probs=51.3
Q ss_pred CccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHHHHHHHcCCCCcCC-----HHHHHHHHHhC
Q psy9403 32 YAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYEILKKLGYFAVSS-----KKKAIKYLKLK 103 (737)
Q Consensus 32 ~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~dvl~~lGi~~~~~-----~~~~~~~l~~~ 103 (737)
..|++||=++|..- ++-..-+---|.+.|.+++.=-|++..++....+-|+.+|+++..+ ..-+++.|.+.
T Consensus 5 ~~DlDGtL~~~~~~-~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~~~~i~ts~~~~~~~L~~~ 80 (248)
T PRK10444 5 ICDIDGVLMHDNVA-VPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYTSAMATADFLRRQ 80 (248)
T ss_pred EEeCCCceEeCCee-CccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCHhhEecHHHHHHHHHHhC
Confidence 46888998888744 5544443445778899999988888666567788889999976542 45667778775
No 46
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=30.55 E-value=75 Score=33.46 Aligned_cols=57 Identities=14% Similarity=0.149 Sum_probs=37.2
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHHHHH
Q psy9403 3 IKGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYEIL 82 (737)
Q Consensus 3 ~kgEt~eEl~g~~~a~~~~~~~~~~~~~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~dvl 82 (737)
+.|++.-| +..+|++.=+.-++ +| ||.|.+. .|-||+.||... ++++.-.||+
T Consensus 26 l~~~ss~e--~y~~aL~~GcRcvE------lD-~wdg~~~-----------------~~eP~v~Hg~t~-t~~i~f~dv~ 78 (258)
T cd08625 26 LTGLSSVE--MYRQVLLTGCRCIE------LD-CWKGRPP-----------------EEEPFITHGFTM-TTEIPFKDVI 78 (258)
T ss_pred cCCccCHH--HHHHHHHcCCCEEE------EE-ecCCCCC-----------------CCCCEEeeCCcc-ccCcCHHHHH
Confidence 34555533 78888876665443 55 6776541 357999999754 4558888887
Q ss_pred HHcC
Q psy9403 83 KKLG 86 (737)
Q Consensus 83 ~~lG 86 (737)
++..
T Consensus 79 ~~I~ 82 (258)
T cd08625 79 EAIA 82 (258)
T ss_pred HHHH
Confidence 7654
No 47
>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=29.76 E-value=82 Score=33.13 Aligned_cols=57 Identities=19% Similarity=0.215 Sum_probs=37.1
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHHHHH
Q psy9403 3 IKGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYEIL 82 (737)
Q Consensus 3 ~kgEt~eEl~g~~~a~~~~~~~~~~~~~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~dvl 82 (737)
+.|++.-| +..+|++.-+.-++ +| ||.|-++ .|-||+.||.. .++++.-.||+
T Consensus 26 l~g~ss~e--~y~~aL~~GcRcvE------lD-~wdG~~~-----------------~~ePiV~HG~t-lts~i~f~dv~ 78 (258)
T cd08623 26 LAGNSSVE--MYRQVLLSGCRCVE------LD-CWKGRTA-----------------EEEPVITHGFT-MTTEISFKEVI 78 (258)
T ss_pred cCCccCHH--HHHHHHHcCCCEEE------EE-eeCCCCC-----------------CCCCEEeeCCC-cccCcCHHHHH
Confidence 34555433 78888877665443 55 6776532 26799999974 45668888887
Q ss_pred HHcC
Q psy9403 83 KKLG 86 (737)
Q Consensus 83 ~~lG 86 (737)
+++.
T Consensus 79 ~~I~ 82 (258)
T cd08623 79 EAIA 82 (258)
T ss_pred HHHH
Confidence 7544
No 48
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=27.72 E-value=2.5e+02 Score=31.71 Aligned_cols=92 Identities=14% Similarity=0.140 Sum_probs=56.2
Q ss_pred CCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHHHHHH----HcCCCCc--CCHHHHHHHHHh--
Q psy9403 31 KYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYEILK----KLGYFAV--SSKKKAIKYLKL-- 102 (737)
Q Consensus 31 ~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~dvl~----~lGi~~~--~~~~~~~~~l~~-- 102 (737)
..+-++|++|-||.|+ +.-++ ..+...|.+|..--.+ +.|.++.+-|. .+|+++. .+++...+.++.
T Consensus 242 ~vI~LVGptGvGKTTT--iaKLA-~~L~~~GkkVglI~aD--t~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 242 QTIALIGPTGVGKTTT--LAKMA-WQFHGKKKTVGFITTD--HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred cEEEEECCCCCcHHHH--HHHHH-HHHHHcCCcEEEEecC--CcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 3567899999999882 22222 2345678888765443 34444544444 4788864 577777777642
Q ss_pred ----CCeEeEecccccHH-HHHHHHHHhHc
Q psy9403 103 ----KRLVFMDISILIPE-LSKLLEIYYML 127 (737)
Q Consensus 103 ----~g~~fl~~~~~~p~-l~~l~~~R~~l 127 (737)
..+.+++.+--++. ...+..+++.+
T Consensus 317 ~~~~~DvVLIDTaGRs~kd~~lm~EL~~~l 346 (436)
T PRK11889 317 EEARVDYILIDTAGKNYRASETVEEMIETM 346 (436)
T ss_pred hccCCCEEEEeCccccCcCHHHHHHHHHHH
Confidence 47899998866552 23344454443
No 49
>PF13486 Dehalogenase: Reductive dehalogenase subunit
Probab=27.22 E-value=44 Score=36.14 Aligned_cols=29 Identities=14% Similarity=-0.010 Sum_probs=24.3
Q ss_pred EEcCCCCCCcCCCCCCCHHHHHHHHHHHHcC
Q psy9403 206 KLTKEQNKEISFPKNSNINDNVLWIQSVLDN 236 (737)
Q Consensus 206 ~~~p~~~g~~~~~~~~~~~~~a~~~~~vl~G 236 (737)
..+|++.|.+ ..+++||||++.+++++.=
T Consensus 125 ~~tPe~~GvP--kWqGTPEEN~~miRaA~r~ 153 (308)
T PF13486_consen 125 APTPEELGVP--KWQGTPEENLRMIRAAARF 153 (308)
T ss_pred CcchhhcCCC--cccCCHHHHHHHHHHHHHH
Confidence 3579999987 5779999999999988763
No 50
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=26.95 E-value=3e+02 Score=30.88 Aligned_cols=81 Identities=14% Similarity=-0.018 Sum_probs=54.1
Q ss_pred CCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHHHHHHH----cCCCC--cCCHHHHHHHHHh--
Q psy9403 31 KYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYEILKK----LGYFA--VSSKKKAIKYLKL-- 102 (737)
Q Consensus 31 ~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~dvl~~----lGi~~--~~~~~~~~~~l~~-- 102 (737)
..+-++|+.|-||.|+ +.-++ ..+...|.+|..--.+ +-|+|+.+-|.. +|+++ ..+|++..+.++.
T Consensus 207 ~ii~lvGptGvGKTTt--~akLA-~~l~~~g~~V~lItaD--tyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 207 RIISLIGQTGVGKTTT--LVKLG-WQLLKQNRTVGFITTD--TFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred eEEEEECCCCCCHHHH--HHHHH-HHHHHcCCeEEEEeCC--ccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 4566889999999882 22232 2345568888875554 445666666554 78776 3578777776653
Q ss_pred ----CCeEeEecccccHH
Q psy9403 103 ----KRLVFMDISILIPE 116 (737)
Q Consensus 103 ----~g~~fl~~~~~~p~ 116 (737)
..+.+++.+-.+|-
T Consensus 282 ~~~~~D~VLIDTAGr~~~ 299 (407)
T PRK12726 282 YVNCVDHILIDTVGRNYL 299 (407)
T ss_pred hcCCCCEEEEECCCCCcc
Confidence 47899999988764
No 51
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=26.75 E-value=4.1e+02 Score=30.17 Aligned_cols=133 Identities=17% Similarity=0.116 Sum_probs=71.5
Q ss_pred CccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHHHHH----HHcCCCCcC--CHHHHHHHHHh--C
Q psy9403 32 YAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYEIL----KKLGYFAVS--SKKKAIKYLKL--K 103 (737)
Q Consensus 32 ~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~dvl----~~lGi~~~~--~~~~~~~~l~~--~ 103 (737)
.+-++|++|-||.|+ ..-+++......|.+|..-..+. -|.++.+.| +.+|+++.. .+..+.+.+++ .
T Consensus 225 vi~lvGptGvGKTTt--aaKLA~~~~~~~G~~V~Lit~Dt--~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~ 300 (432)
T PRK12724 225 VVFFVGPTGSGKTTS--IAKLAAKYFLHMGKSVSLYTTDN--YRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGS 300 (432)
T ss_pred EEEEECCCCCCHHHH--HHHHHHHHHHhcCCeEEEecccc--hhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCC
Confidence 356889999999982 22222333345688888766544 334444433 567887643 24556666653 4
Q ss_pred CeEeEecccccHH-HHHHHHHHhHcCCCCchhhHHHhhcCCC--CCCceEEEeeCcccHHHHHHHHhhccCCCeEEEEE
Q psy9403 104 RLVFMDISILIPE-LSKLLEIYYMLGIRNSSHLLVKIIQPLS--IPALRLVSYTHPEYLKILSDYFYNEKSLGDIFLMQ 179 (737)
Q Consensus 104 g~~fl~~~~~~p~-l~~l~~~R~~lg~Rt~~~t~~~ll~Pl~--~p~~~v~Gv~h~~~~~~~~~~~~~~~g~~~~~vv~ 179 (737)
.+.+++.+-+.|. ...+-.+.+. .+..+|.. .....+-..++..-+....+.++. +++.+.++=+
T Consensus 301 D~VLIDTaGr~~rd~~~l~eL~~~----------~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~-~~~~glIlTK 368 (432)
T PRK12724 301 ELILIDTAGYSHRNLEQLERMQSF----------YSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYES-LNYRRILLTK 368 (432)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHH----------HHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcC-CCCCEEEEEc
Confidence 6778887777642 3333333332 22222211 111133334455455566666665 7776555544
No 52
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=25.84 E-value=91 Score=32.75 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=36.4
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHHHHHH
Q psy9403 4 KGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYEILK 83 (737)
Q Consensus 4 kgEt~eEl~g~~~a~~~~~~~~~~~~~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~dvl~ 83 (737)
.|++. ..+..+|++.=+.-++ +| ||.|-+ ..|-||+.||... ++++.-.||++
T Consensus 27 ~~~ss--~~~y~~aL~~GcRcvE------lD-~wdg~~-----------------~~~eP~V~HG~tl-ts~i~f~dv~~ 79 (257)
T cd08626 27 GGKSS--VEMYRQVLLAGCRCIE------LD-CWDGKG-----------------EDQEPIITHGKAM-CTDILFKDVIQ 79 (257)
T ss_pred cCCcc--HHHHHHHHHcCCcEEE------EE-ecCCCC-----------------CCCCCEEeeCCCC-ccCcCHHHHHH
Confidence 44543 3377888876654443 55 676542 1368999999865 55688888887
Q ss_pred HcC
Q psy9403 84 KLG 86 (737)
Q Consensus 84 ~lG 86 (737)
+..
T Consensus 80 aI~ 82 (257)
T cd08626 80 AIK 82 (257)
T ss_pred HHH
Confidence 654
No 53
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=25.80 E-value=90 Score=32.91 Aligned_cols=48 Identities=21% Similarity=0.322 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCCCCCCCCCCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHHHHHHHcC
Q psy9403 12 SGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYEILKKLG 86 (737)
Q Consensus 12 ~g~~~a~~~~~~~~~~~~~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~dvl~~lG 86 (737)
.++.+|++.-+.-++ +| ||.|-| |.||+.||... ++++.-.||++++.
T Consensus 33 ~~y~~aL~~GcR~vE------lD-~w~g~~-------------------gepvV~Hg~tl-ts~i~f~dv~~~I~ 80 (260)
T cd08597 33 EGYVRALQRGCRCVE------LD-CWDGPN-------------------GEPVIYHGHTL-TSKISFRSVIEAIN 80 (260)
T ss_pred HHHHHHHHhCCCEEE------EE-eEcCCC-------------------CCEEEEeCCcc-ccceEHHHHHHHHH
Confidence 478888876665443 55 587654 58999999754 44578888877543
No 54
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=25.64 E-value=2.8e+02 Score=31.44 Aligned_cols=93 Identities=17% Similarity=0.061 Sum_probs=54.7
Q ss_pred CCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHHHHH----HHcCCCC--cCCHHHHHHHHH---
Q psy9403 31 KYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYEIL----KKLGYFA--VSSKKKAIKYLK--- 101 (737)
Q Consensus 31 ~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~dvl----~~lGi~~--~~~~~~~~~~l~--- 101 (737)
..+-++|++|-||.|+ -...++.+.+...|.+|+.--.+ +-|+++.+-| +.+|+++ ..++++..+.|+
T Consensus 222 ~~i~~vGptGvGKTTt-~~kLA~~~~~~~~g~~V~li~~D--~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~ 298 (424)
T PRK05703 222 GVVALVGPTGVGKTTT-LAKLAARYALLYGKKKVALITLD--TYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR 298 (424)
T ss_pred cEEEEECCCCCCHHHH-HHHHHHHHHHhcCCCeEEEEECC--ccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC
Confidence 3567889999999982 22222222223557777765443 3345555554 3478876 346666555554
Q ss_pred hCCeEeEecccccHH-HHHHHHHHhH
Q psy9403 102 LKRLVFMDISILIPE-LSKLLEIYYM 126 (737)
Q Consensus 102 ~~g~~fl~~~~~~p~-l~~l~~~R~~ 126 (737)
...+.+++.+-+.|. ...+..+++-
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~l 324 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKAL 324 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHH
Confidence 457899999987665 3333344443
No 55
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=25.51 E-value=1.1e+02 Score=30.09 Aligned_cols=91 Identities=16% Similarity=0.098 Sum_probs=59.8
Q ss_pred cEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCC---C--CCCCc--HHHHHHHcC-CCCcCCHHHHHHHHHhC--
Q psy9403 34 PIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKK---N--FGRIT--TYEILKKLG-YFAVSSKKKAIKYLKLK-- 103 (737)
Q Consensus 34 di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~---~--~~~~g--s~dvl~~lG-i~~~~~~~~~~~~l~~~-- 103 (737)
=|.|++|.||.| .|..+.+..|++=+--|+-- . ....| ...++++=+ ++=...-..+.+.|++.
T Consensus 4 iilG~pGaGK~T------~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~ 77 (178)
T COG0563 4 LILGPPGAGKST------LAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADC 77 (178)
T ss_pred EEECCCCCCHHH------HHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcc
Confidence 378999999987 57888888888776655421 1 11111 223344444 33333445666667665
Q ss_pred --CeEeEecccccHHHHHHHHHHhHcCCC
Q psy9403 104 --RLVFMDISILIPELSKLLEIYYMLGIR 130 (737)
Q Consensus 104 --g~~fl~~~~~~p~l~~l~~~R~~lg~R 130 (737)
+|-|..-|...+.++.+-..-+++|.+
T Consensus 78 ~~~~I~dg~PR~~~qa~~l~r~l~~~g~~ 106 (178)
T COG0563 78 KAGFILDGFPRTLCQARALKRLLKELGVR 106 (178)
T ss_pred cCeEEEeCCCCcHHHHHHHHHHHHHcCCC
Confidence 799999999999998888877777733
No 56
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=25.42 E-value=1.8e+02 Score=30.19 Aligned_cols=70 Identities=16% Similarity=0.152 Sum_probs=48.4
Q ss_pred CccEEecCCCCCCCCCchhHHHHH-HHHcCCCcEEEeCCCCCCCCCcHHHHHHHcCCCCc-----CCHHHHHHHHHhC
Q psy9403 32 YAPIIIPSYNGSRRFMNVIPLLAL-LLSKKGIPVFIHGIKKNFGRITTYEILKKLGYFAV-----SSKKKAIKYLKLK 103 (737)
Q Consensus 32 ~~di~g~~~dg~~~~~n~s~~~a~-vla~~G~~V~~HG~~~~~~~~gs~dvl~~lGi~~~-----~~~~~~~~~l~~~ 103 (737)
.+|++||=++|... ++- ..-++ -|.+.|++++.=-|.+..+.....+.|+.+|+++. .+...+.+.|.+.
T Consensus 5 ~~D~DGtl~~~~~~-i~~-a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~~~~iit~~~~~~~~l~~~ 80 (249)
T TIGR01457 5 LIDLDGTMYKGKER-IPE-AETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPATLETVFTASMATADYMNDL 80 (249)
T ss_pred EEeCCCceEcCCee-CcC-HHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEeeHHHHHHHHHHhc
Confidence 46888999998876 663 33333 47788999988766554444567889999999875 2334455667765
No 57
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=24.88 E-value=95 Score=32.64 Aligned_cols=54 Identities=22% Similarity=0.258 Sum_probs=36.0
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHHHHHH
Q psy9403 4 KGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYEILK 83 (737)
Q Consensus 4 kgEt~eEl~g~~~a~~~~~~~~~~~~~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~dvl~ 83 (737)
.|++.. .+..+|++.=+.-++ +| ||.|-| |-||+.||... ++++.-.||++
T Consensus 27 ~~~ss~--e~y~~aL~~GcRcvE------lD-~wdg~~-------------------~ep~v~HG~tl-t~~i~f~~v~~ 77 (257)
T cd08595 27 VGPSDL--DGYVSALRKGCRCLE------ID-CWDGAD-------------------NEPVVYHGYTL-TSKILFKEVIT 77 (257)
T ss_pred cCcccH--HHHHHHHHhCCcEEE------EE-eecCCC-------------------CCcEEecCCCc-ccccCHHHHHH
Confidence 444443 468888877665443 56 687554 47999999754 56688888877
Q ss_pred HcC
Q psy9403 84 KLG 86 (737)
Q Consensus 84 ~lG 86 (737)
+..
T Consensus 78 ~I~ 80 (257)
T cd08595 78 TVE 80 (257)
T ss_pred HHH
Confidence 543
No 58
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=21.99 E-value=1.4e+02 Score=31.14 Aligned_cols=74 Identities=16% Similarity=0.065 Sum_probs=50.1
Q ss_pred CccEEecCCCCCCC---CCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHHHHHHHcCCCCcC----C-HHHHHHHHHhC
Q psy9403 32 YAPIIIPSYNGSRR---FMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYEILKKLGYFAVS----S-KKKAIKYLKLK 103 (737)
Q Consensus 32 ~~di~g~~~dg~~~---~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~dvl~~lGi~~~~----~-~~~~~~~l~~~ 103 (737)
..|++||=++|... -++-..-+---|.+.|++++.=-|++..++....+.|+.+|+++.. | ...+.+.|.+.
T Consensus 5 ~~D~DGtl~~~~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~~~~i~ts~~~~~~~l~~~ 84 (257)
T TIGR01458 5 LLDISGVLYISDAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDISEDEVFTPAPAARQLLEEK 84 (257)
T ss_pred EEeCCCeEEeCCCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCCCHHHeEcHHHHHHHHHHhc
Confidence 35788888876551 2442333333466789999998888876656788899999998642 2 24556777776
Q ss_pred Ce
Q psy9403 104 RL 105 (737)
Q Consensus 104 g~ 105 (737)
++
T Consensus 85 ~~ 86 (257)
T TIGR01458 85 QL 86 (257)
T ss_pred CC
Confidence 54
No 59
>PLN02641 anthranilate phosphoribosyltransferase
Probab=21.75 E-value=36 Score=37.44 Aligned_cols=70 Identities=13% Similarity=0.121 Sum_probs=47.7
Q ss_pred cHHHHHHHcCCCCcC-------CHHHHHHHHHhCCeEeEecc--------------cccHHHHHHHHHHhHcCCCCc--h
Q psy9403 77 TTYEILKKLGYFAVS-------SKKKAIKYLKLKRLVFMDIS--------------ILIPELSKLLEIYYMLGIRNS--S 133 (737)
Q Consensus 77 gs~dvl~~lGi~~~~-------~~~~~~~~l~~~g~~fl~~~--------------~~~p~l~~l~~~R~~lg~Rt~--~ 133 (737)
.++=++.++|+++.. +..-.++.|+..|+..-..| .|.|.++ -.+++.+.+|.- +
T Consensus 94 ~aa~v~A~~G~~V~kHGnr~~ss~~GsaDvLeaLGi~~~~~~~~~~~~l~~~g~~fl~a~~~h--Pa~~~~~~~R~~LG~ 171 (343)
T PLN02641 94 GSSILAAACGAKVAKQGNRSSSSACGSADVLEALGVAIDLGPEGVKRCVEEVGIGFMMAPKYH--PAMKIVAPVRKKLKV 171 (343)
T ss_pred HHHHHHHhCCCeEEEeCCCCCCCccCHHHHHHHcCCCCCCCHHHHHHHHHhcCcEEEechhhC--HHHHHHHHHHHHhCC
Confidence 466688999998754 23557889999998752221 1333333 345556666654 5
Q ss_pred hhHHHhhcCCCCCCc
Q psy9403 134 HLLVKIIQPLSIPAL 148 (737)
Q Consensus 134 ~t~~~ll~Pl~~p~~ 148 (737)
-|+||+|+||.||++
T Consensus 172 RT~fN~lgpL~NPa~ 186 (343)
T PLN02641 172 KTVFNILGPMLNPAR 186 (343)
T ss_pred CcHHHHHHHhcCCCC
Confidence 899999999999984
No 60
>COG4815 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.32 E-value=73 Score=29.52 Aligned_cols=45 Identities=11% Similarity=0.209 Sum_probs=34.7
Q ss_pred CccccCCCccccceeEEeCceechhh-ccHHHHHhcCC-CCCccccc
Q psy9403 564 SINIDDEGNPTQCTTLIENGILKGYM-QDIMNARLMNM-SITGNARR 608 (737)
Q Consensus 564 s~~fDdEGv~t~~~~LIe~GvLk~~l-~d~~tA~k~g~-~~TGna~r 608 (737)
..|||++|....-..+|-|+++.+++ ..+..-...|+ .++++-..
T Consensus 67 n~Pfs~~~~a~~LlI~V~de~~~G~F~Fpre~L~ekGI~ts~~~~GK 113 (145)
T COG4815 67 NQPFSDDGMAAGLLIFVIDEVLRGVFRFPREHLAEKGITTSDGQPGK 113 (145)
T ss_pred cCCCCcccccCeeEEEEEccccceEEEecHHHHHHhCeeeccCCCCc
Confidence 57999999999999999999999865 55666666676 45555433
Done!