Query psy9403
Match_columns 737
No_of_seqs 343 out of 2457
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 18:18:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9403.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9403hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qtd_A PMBA protein; putative 100.0 5.7E-85 2E-89 732.9 57.0 428 277-736 17-449 (449)
2 1vl4_A PMBA-related protein; s 100.0 3.7E-84 1.3E-88 727.4 49.1 430 274-736 12-447 (447)
3 3tv9_A Putative peptide matura 100.0 1.9E-83 6.6E-88 720.4 53.8 424 277-733 29-457 (457)
4 1vpb_A Putative modulator of D 100.0 3.7E-83 1.3E-87 720.0 49.9 428 277-736 19-451 (451)
5 1khd_A Anthranilate phosphorib 100.0 2.1E-59 7.1E-64 504.3 21.7 248 1-257 55-315 (345)
6 1o17_A Anthranilate PRT, anthr 100.0 6E-59 2E-63 500.8 18.2 262 1-274 45-317 (345)
7 1vqu_A Anthranilate phosphorib 100.0 4E-58 1.4E-62 498.8 23.7 251 1-259 69-341 (374)
8 2elc_A Trp D, anthranilate pho 100.0 2.9E-58 1E-62 492.9 21.6 249 1-260 42-299 (329)
9 3r88_A Anthranilate phosphorib 100.0 7.5E-58 2.6E-62 497.2 22.9 252 1-261 68-332 (377)
10 4hkm_A Anthranilate phosphorib 100.0 2.9E-58 9.8E-63 497.6 17.9 252 1-260 48-311 (346)
11 2dsj_A Pyrimidine-nucleoside ( 100.0 8.7E-40 3E-44 356.7 13.3 243 1-285 45-307 (423)
12 3h5q_A PYNP, pyrimidine-nucleo 100.0 6.3E-39 2.1E-43 351.1 13.5 219 1-260 48-291 (436)
13 2tpt_A Thymidine phosphorylase 100.0 1.8E-37 6E-42 341.5 9.1 226 1-260 46-292 (440)
14 1brw_A PYNP, protein (pyrimidi 100.0 2.4E-36 8.2E-41 331.9 17.8 215 1-260 45-288 (433)
15 1uou_A Thymidine phosphorylase 100.0 3.5E-36 1.2E-40 332.6 18.4 215 1-260 72-316 (474)
16 4ex8_A ALNA; alpha/beta/alpha- 22.6 43 0.0015 34.5 2.8 130 5-146 79-242 (316)
No 1
>3qtd_A PMBA protein; putative modulator of gyrase (PMBA), structural genomics, PS biology, midwest center for structural genomics, MCSG; 2.70A {Pseudomonas aeruginosa}
Probab=100.00 E-value=5.7e-85 Score=732.95 Aligned_cols=428 Identities=18% Similarity=0.284 Sum_probs=395.5
Q ss_pred HHHHHHHHHHHhhCCCCEEEEEEEEEEEEEEEEECCeeeEeEEEEEeeEEEEEEECCeEEEEEcCCCCHHHHHHHHHHHH
Q psy9403 277 EKILLKILGNMFKNKVDYADFYFQFTKNENWILEEGIVKTGNFSINQGVGVRAISGDKTAFFYSDDISKNTLINAVKSTR 356 (737)
Q Consensus 277 ~~~~~~il~~a~~~g~~~~ei~~~~~~~~~i~~~~~~l~~~~~~~~~gigvRv~~~gr~G~a~t~~l~~~~l~~ai~~A~ 356 (737)
++.++++|+.+++.|++++||+++++++.++++++|+|+++..+.+.|++|||++|+|+||++++++++++|++++++|+
T Consensus 17 ~~~~~~~l~~a~~~gad~aev~~~~~~~~sv~~~~g~v~~~~~~~~~g~gvRv~~~~~~G~ast~~ls~~~l~~~v~~A~ 96 (449)
T 3qtd_A 17 REQVEQIIAEARRQGASACEVAVSLEQGLSTSVRQGEVETVEFNRDQGFGITLYAGQRKGSASTSATGEAAIRETVAAAL 96 (449)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEETTEEEEEEESCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEeeeEEEEEECCEeeEEEeeeeeeEEEEEEECCeEEEEEeCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccC-CCccccccccccccCCCCC---CCCCCCCCCHHHHHHHHHHHHHHHhccCCCEEEEE-EEEEEEEEEEEEEE
Q psy9403 357 SIANQSN-GKIKIIKNIKKIKINSLYS---FTDTISSINIREKIKLLERVEKIARLKDPRVIKVI-ANLSGEYDVILITR 431 (737)
Q Consensus 357 ~~A~~~~-~~~~~~~~~~~~~~~~~y~---~~~~~~~~~~~e~~e~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~i~n 431 (737)
++|+..+ +++..+++ +......|+ ..+|. ++++++++++++++++.++++|++|.++. ++|+....++.|+|
T Consensus 97 ~~A~~~~~d~~~~l~~--~~~~~~~~~~~~~~~p~-~~~~~e~i~ll~~~~~~a~~~d~~i~~~~~~~~~~~~~~~~~~n 173 (449)
T 3qtd_A 97 AIARHTSEDECAGLAD--AALMARELPELDLYHPW-SLSPEQAVERALACEAAAFAADKRVTKADGTTLNTHQGCRVYGN 173 (449)
T ss_dssp HHHHHSCCCTTCSCCC--GGGBCSCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHCTTEEEEEEEEEEEEEEEEEEEE
T ss_pred HHhhccCCCcccCCCC--hhhcccccCcccccCcc-cCCHHHHHHHHHHHHHHHHhcCCCEEEECcEEEEEEEEEEEEEe
Confidence 9999887 55555553 111111121 12343 78999999999999999999999999887 79999999999999
Q ss_pred cCCCeeEEeeeEEEEEEEEEEEeCCeeeeecccccccccccccccccHHHHHHHHHHHHHHhcCCCCCCCeeEEEEeCCc
Q psy9403 432 NDGLIVADIRPLVQLFVTIIVEKNGRREIGNSGCGGRYNYNYFTDMILEKCVSNSVNSALINLEAKPAPAGIMKVVLGPG 511 (737)
Q Consensus 432 S~G~~~~~~~~~~~~~~~~~a~~g~~~~~~~~~~~~r~~~~~l~~~d~~~~~~~a~~~a~~~l~a~~i~~g~y~Vil~p~ 511 (737)
|+|+++++.++.+++++++++++++.++++|++.+++. ++.+. ++++++++|+++|+.+|+++++|+|+|||||+|.
T Consensus 174 S~G~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~-~~~l~--~~~~i~~~a~~~a~~~L~a~~~~~G~~~Vvl~p~ 250 (449)
T 3qtd_A 174 SHGFIGGYASTRHSLSCVMIAEGEGQMQRDYWYDVNRR-GEALA--SAESIGRRAAERAASRLGARPVQTAEVPVLFAPE 250 (449)
T ss_dssp TTSCEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEESS-GGGSC--CHHHHHHHHHHHHHHTTTCBCCCCEEEEEEECHH
T ss_pred CCCceEEEeeceEEEEEEEEEEcCCceeeeeeeccccC-hhHcc--CHHHHHHHHHHHHHHhcCCccCCCCeEEEEECCh
Confidence 99999999999999999999999999999999887775 43332 6899999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhccccchhhcCCCccccccCccccCCceEEEEcCCCCCCCCCccccCCCccccceeEEeCceechhhcc
Q psy9403 512 WPGILLHEAIGHGLEGDFNRKGSSAFSNCIGKRIASKEITIVDNGTLANRRGSINIDDEGNPTQCTTLIENGILKGYMQD 591 (737)
Q Consensus 512 a~~~ll~~~~~~~~~a~~v~~g~S~l~~klG~~v~s~~lti~DDP~~~~~~gs~~fDdEGv~t~~~~LIe~GvLk~~l~d 591 (737)
+++.|+|++++ +++++++++|+|+|++|+|++|+|+.|||+|||++|+++||++|||||+|+++++|||||||++||||
T Consensus 251 ~~~~ll~~~~~-~~~g~~v~~g~S~l~~klG~~v~s~~vti~dDp~~~~~~gs~~fDdEGv~t~~~~lIe~GvL~~~l~d 329 (449)
T 3qtd_A 251 IAVGLFGHFLG-AISGGSLYRKSSFLEGALGQRLFPEWLSIDERPHLVGALGSASFDSDGLATYAKPFVENGELVSYVLG 329 (449)
T ss_dssp HHHHHHHHHHH-HTBHHHHHTTCCTTTTCTTCBCSCTTCCEEECTTCTTCTTCCSBCTTCBBCCCEEEEETTEECCCBCC
T ss_pred HHHHHHHHHHH-hcChhhHhcCCCcccccCCCEecCCceEEEECCCCCCCCCCCCCCCCCCcCCccEEEECCEEcccccC
Confidence 99999999887 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCccccccCcCCCCcCCceeEEEcCCCCChhHHHHcccCeEEEEecCCCccccccceEEEEeceEEEEeC
Q psy9403 592 IMNARLMNMSITGNARRESFAHIPIPRMTNTYMLNGKFHPEEIISSVKNGLYATNFSGGQVDITNGKFVFSASKAYIIKN 671 (737)
Q Consensus 592 ~~tA~k~g~~~TGna~r~~~~~~P~~~~~Nl~i~~g~~s~eeli~~~~~Gl~V~~~~g~~~np~sGdFS~~~~~g~~Ien 671 (737)
++||+++|++|||||+ +|+|++|+||+.+++|||+++++||||++++|+++||+||+||+++. ||||||
T Consensus 330 ~~~A~~~G~~~TGna~----------~~~N~~i~~G~~s~eeli~~~~~Gl~v~~~~G~~vn~~tG~fs~~~~-gy~Ien 398 (449)
T 3qtd_A 330 TYSGRKLGLPSTANAG----------GVHNLFVSHGDEDQAALIRRMERGLLVTELMGQGVNLVTGDYSRGAA-GYWVEN 398 (449)
T ss_dssp HHHHHHHTSCCCSCTT----------CCSSEEECCCSCCHHHHHHHHCSEEEEEEEESCCBCTTTCEEEEEEE-EEEEET
T ss_pred HHHHHHhCCCCCcCcc----------CcceEEEeCCCCCHHHHHHhcCCEEEEEeccCCCcCCCCceEEeEEE-EEEEEC
Confidence 9999999999999997 68999999999999999999999999999999999999999999995 999999
Q ss_pred CeeeccccceEEEecHHHHHhhchhccCcceecCCCccccCCCcceecccccceEEEeceEEecC
Q psy9403 672 GKITYPVKGATLIGHGPNILKKVSMIGNDMKLDPGVGVCGKDGQMVPVGVGQPTLKIDSITVGGT 736 (737)
Q Consensus 672 G~i~~pV~~~~isGn~~~~L~~I~~vg~d~~~~~~~~~cgk~~q~~~~~~~~Psi~v~~~~V~G~ 736 (737)
|||++||+++||+||++++|++|++||+|+++.+ +..+|+|+|++|+|+|+
T Consensus 399 Gei~~pV~~~ti~Gn~~~~l~~I~~vg~d~~~~~--------------~~~~Psi~i~~~~V~G~ 449 (449)
T 3qtd_A 399 GEIQFPVQEVTIAANLRDLFRRIVAVGKDIERRG--------------NLHTGSVLVESMMVAGR 449 (449)
T ss_dssp TEEEEEEEEEEEEEEHHHHHHTEEEECSCCCCSS--------------SEECCCEEEEEEEEECC
T ss_pred CEEeeeeeeEEEEEcHHHHHHhhHhhccCcEecC--------------CCcCCeEEECcEEEecC
Confidence 9999999999999999999999999999999874 24689999999999996
No 2
>1vl4_A PMBA-related protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS regulation; 1.95A {Thermotoga maritima} SCOP: d.283.1.1
Probab=100.00 E-value=3.7e-84 Score=727.38 Aligned_cols=430 Identities=20% Similarity=0.236 Sum_probs=388.0
Q ss_pred CCCHH-HHHHHHHHHhhCCCCEEEEEEEEEEEEEEEEECCeeeEeEEEEEeeEEEEEEECCeEEEEEcCCCCHHHHHHHH
Q psy9403 274 DLDEK-ILLKILGNMFKNKVDYADFYFQFTKNENWILEEGIVKTGNFSINQGVGVRAISGDKTAFFYSDDISKNTLINAV 352 (737)
Q Consensus 274 ~~~~~-~~~~il~~a~~~g~~~~ei~~~~~~~~~i~~~~~~l~~~~~~~~~gigvRv~~~gr~G~a~t~~l~~~~l~~ai 352 (737)
.|+-+ .++++++.+++.|+| +||+++++++.++++++|+|+++..+.+.|++|||++|+|+||+++++++++ ++++
T Consensus 12 ~~~~~~~~~~~l~~a~~~gad-aev~~~~~~~~~v~~~~g~v~~~~~~~~~g~gvRv~~~~~~g~a~t~~l~~~--~~~v 88 (447)
T 1vl4_A 12 HMTFEEFKDRLFALAKKNGVE-VQISFLETREFSLRLANGDLDQYTDAGKFNVEIKVLKDGKTGTFRTQVLENP--EKCF 88 (447)
T ss_dssp --CHHHHHHHHHHHHHHHTCE-EEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEETTEEEEEEESSCCCH--HHHH
T ss_pred ccCHHHHHHHHHHHHHHcCCc-EEEEEEEeEeEEEEEECCEeEEEEeeeeeeEEEEEEECCEEEEEEeCCCChH--HHHH
Confidence 34443 479999999999999 9999999999999999999999999999999999999999999999999987 8899
Q ss_pred HHHHHHhcccC-CCccccccccccccCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHhccCCCEEEE-EEEEEEEEEEEEE
Q psy9403 353 KSTRSIANQSN-GKIKIIKNIKKIKINSLYSFTDT-ISSINIREKIKLLERVEKIARLKDPRVIKV-IANLSGEYDVILI 429 (737)
Q Consensus 353 ~~A~~~A~~~~-~~~~~~~~~~~~~~~~~y~~~~~-~~~~~~~e~~e~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~i 429 (737)
++|+++|+..+ +++..++. +......+...++ +.++++++++++++++++.+++ +++|.++ .++|+....++.|
T Consensus 89 ~~A~~~a~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~i~~~~~~~~~~~~~~~~~ 165 (447)
T 1vl4_A 89 EEALSNLQVKDSEEKEYFFE--GGKEYREMETYVGRFEKLSVKEKMDMAKKAHESAAK-DERVVMVPTVMYKDMVIKKII 165 (447)
T ss_dssp HHHHHGGGCC----CCCCCC--SCCCCCCCCCCCCCGGGSCHHHHHHHHHHHHHHHHC-STTEEEEEEEEEEEEEEEEEE
T ss_pred HHHHHHHhccCCCccccCCC--cccccccccccCCcccCCCHHHHHHHHHHHHHHHhc-CCCeEEeCcEEEEEEEEEEEE
Confidence 99999999876 55544542 1111111222223 3468999999999999999999 8999888 5899999999999
Q ss_pred EEcCCCeeEEeeeEEEEEEEEEEEeCCeeeeecccccccccccccccccHHHHHHHHHHHHHHhcCCCCCCCeeEEEEeC
Q psy9403 430 TRNDGLIVADIRPLVQLFVTIIVEKNGRREIGNSGCGGRYNYNYFTDMILEKCVSNSVNSALINLEAKPAPAGIMKVVLG 509 (737)
Q Consensus 430 ~nS~G~~~~~~~~~~~~~~~~~a~~g~~~~~~~~~~~~r~~~~~l~~~d~~~~~~~a~~~a~~~l~a~~i~~g~y~Vil~ 509 (737)
+||+|+++++.++.++++++++++++ .++++|++.++| .|+.+ ++++++++|+++|+.+|+++++++|+|||||+
T Consensus 166 ~nS~G~~~~~~~~~~~~~~~~~a~~g-~~~~~~~~~~~~-~~~~l---~~~~~~~~a~~~a~~~l~a~~~~~G~~~Vvl~ 240 (447)
T 1vl4_A 166 TNTLGLDVESQMDGGFLFAMAIARDA-NPRSGSWYELAR-TPEDL---NPEEIGKRAAEEAISLIGSKTIPSGKYPVLMR 240 (447)
T ss_dssp EETTSCEEEEEEEEEEEEEEEEECSS-SCEEEEEEEEES-SGGGC---CHHHHHHHHHHHHHHTTTCBCCCSEEEEEEEC
T ss_pred EeCCCCceEEeccEEEEEEEEEEecC-CeeeEEEeeccc-ChhhC---CHHHHHHHHHHHHHHhcCCccCCCceEEEEEC
Confidence 99999999999999999999999988 889999887777 45533 79999999999999999999999999999999
Q ss_pred CchHHHHHHHHHhhccccchhhcCCCccccccCccccCCceEEEEcCCCCCCCCCccccCCCccccceeEEeCceechhh
Q psy9403 510 PGWPGILLHEAIGHGLEGDFNRKGSSAFSNCIGKRIASKEITIVDNGTLANRRGSINIDDEGNPTQCTTLIENGILKGYM 589 (737)
Q Consensus 510 p~a~~~ll~~~~~~~~~a~~v~~g~S~l~~klG~~v~s~~lti~DDP~~~~~~gs~~fDdEGv~t~~~~LIe~GvLk~~l 589 (737)
|.+++.|+ ++++|+++++++++|+|+|++|+|++|+|+.|||+|||++|+++||++|||||+|+++++|||||||++||
T Consensus 241 p~~~~~ll-e~~g~~le~~~~~~g~S~l~~klG~~v~s~~vti~DDp~~~~~~gs~~fDdEGvpt~~~~LIe~GvL~~~l 319 (447)
T 1vl4_A 241 NTALLDLM-EMFIPMISAENVQKNLSPLKGKLGEQVGNPAVSIKDLPYHPKGLSSTPFDDEGVPTTEKFVLENGVLKTFL 319 (447)
T ss_dssp HHHHHHHG-GGGHHHHBHHHHHTTCCTTTTCTTSBCSCTTCCEEEESCCTTCTTCCSBCTTSCBCCCEEEEETTEECCCB
T ss_pred ChHHHHHH-HHHHHHcChHHHHcCCccccccCCCeecCCCcEEEECCCCCCCCcCCcCCCCCCCCcccEEEECCEEehhh
Confidence 99999999 79999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHhcCCCCCccccccCcCCCCcCCceeEEEcCCCCChhHHHHcccCeEEEEecCC-Cc-cccccceEEEEeceEE
Q psy9403 590 QDIMNARLMNMSITGNARRESFAHIPIPRMTNTYMLNGKFHPEEIISSVKNGLYATNFSG-GQ-VDITNGKFVFSASKAY 667 (737)
Q Consensus 590 ~d~~tA~k~g~~~TGna~r~~~~~~P~~~~~Nl~i~~g~~s~eeli~~~~~Gl~V~~~~g-~~-~np~sGdFS~~~~~g~ 667 (737)
+|+++|+++|++|||||+| |.|||+|++|+||+.+++|||+++++||||++++| ++ +||+||+||+++. ||
T Consensus 320 ~d~~tA~~~g~~~TGna~r------p~~r~~N~~i~~G~~s~eeli~~~~~Gl~v~~~~g~~sgvd~~tG~fs~~~~-gy 392 (447)
T 1vl4_A 320 HNLKTARKEGVEPTGNGFV------GGIRPVNLMLMPGEKSFEELLKEMDRGVVITEVEGMHAGANSISGEFSLFAK-GY 392 (447)
T ss_dssp CCHHHHHHHTCCCCSCEET------TEECCSEEEECCCSBCHHHHHHHHCSEEEEEEEECHHHHBCTTTCEEEEEEE-EE
T ss_pred hcHHHHHHcCCCCCCCCCC------CCCcceEEEEeCCCCCHHHHHhhcCCEEEEEeeeccccccCCCceeEEEEEE-EE
Confidence 9999999999999999997 99999999999999999999999999999999999 53 9999999999997 99
Q ss_pred EEeCCeeeccccceEEEecHHHHHhhchhccCcceecCCCccccCCCcceecccccceEEEeceEEecC
Q psy9403 668 IIKNGKITYPVKGATLIGHGPNILKKVSMIGNDMKLDPGVGVCGKDGQMVPVGVGQPTLKIDSITVGGT 736 (737)
Q Consensus 668 ~IenG~i~~pV~~~~isGn~~~~L~~I~~vg~d~~~~~~~~~cgk~~q~~~~~~~~Psi~v~~~~V~G~ 736 (737)
|||||||++||++++|+||++++|++|++||+|.++.+ ++++|+|+|++++|+|+
T Consensus 393 ~IenGei~~pV~~~~l~Gn~~~~L~~I~~vg~d~~~~g--------------~~~~P~i~v~~~~V~G~ 447 (447)
T 1vl4_A 393 WVENGEIAHGVEDITISGNFLDLLRKIVLVGNDVKVSQ--------------HTIAPSVLVEVLDVAGK 447 (447)
T ss_dssp EEETTEEEEEEEEEEEEEEHHHHHHTEEEEBSCCEECS--------------SEEECCEEEEEEEEC--
T ss_pred EEECCEECceecceEEEEcHHHHHHhhHhhcCCcEecC--------------CCcCceEEEeeEEEeCC
Confidence 99999999999999999999999999999999999862 35699999999999985
No 3
>3tv9_A Putative peptide maturation protein; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta, cytosol; 2.50A {Shigella flexneri}
Probab=100.00 E-value=1.9e-83 Score=720.38 Aligned_cols=424 Identities=20% Similarity=0.278 Sum_probs=388.6
Q ss_pred HHHHHHHHHHHhhCCCCEEEEEEEEEEEEEEEEECCeeeEeEEEEEeeEEEEEEECCeEEEEEcCCCCHHHHHHHHHHHH
Q psy9403 277 EKILLKILGNMFKNKVDYADFYFQFTKNENWILEEGIVKTGNFSINQGVGVRAISGDKTAFFYSDDISKNTLINAVKSTR 356 (737)
Q Consensus 277 ~~~~~~il~~a~~~g~~~~ei~~~~~~~~~i~~~~~~l~~~~~~~~~gigvRv~~~gr~G~a~t~~l~~~~l~~ai~~A~ 356 (737)
++.++++|+.+++. ++++||+++++++.++++++|+|++++.+.+.|++|||++++|+||++|+++++++|++++++|+
T Consensus 29 ~~~~~~~l~~a~~~-ad~aev~~~~~~~~sv~~~~g~ve~~~~~~~~gigvRv~~~g~~G~ast~~ls~~~l~~~v~~A~ 107 (457)
T 3tv9_A 29 EEAVSTALELASGK-SDGAEVAVSKTTGISVSTRYGEVENVEFNSDGALGITVYHQNRKGSASSTDLSPQAIARTVQAAL 107 (457)
T ss_dssp HHHHHHHHHHHHTT-CSEEEEEEEEEEEEEEEECTTSCCEEEEEEEEEEEEEEEETTEEEEEEESCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CCEEEEEEEEeEEEEEEEECCEeeEEEeeeeeeEEEEEEECCEEEEEEECCCCHHHHHHHHHHHH
Confidence 35689999999988 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccC-CCccccccccccccCCCCC---CCCCCCCCCHHHHHHHHHHHHHHHhccCCCEEEEE-EEEEEEEEEEEEEE
Q psy9403 357 SIANQSN-GKIKIIKNIKKIKINSLYS---FTDTISSINIREKIKLLERVEKIARLKDPRVIKVI-ANLSGEYDVILITR 431 (737)
Q Consensus 357 ~~A~~~~-~~~~~~~~~~~~~~~~~y~---~~~~~~~~~~~e~~e~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~i~n 431 (737)
++|+..+ +++..+++ +......|+ ..+|. ++++++++++++++++.++++|++|.++. ++++....++.|+|
T Consensus 108 ~~A~~~~~d~~~~l~~--~~~~~~~~~~~~~~~p~-~~~~~e~i~ll~~~~~~a~~~d~~I~~~~~~~~~~~~~~~~~~n 184 (457)
T 3tv9_A 108 DIARYTSPDPCAGVAD--KELLAFDAPNLDLFHPA-EVSPDEAIELAARAEQAALQADKRITNTEGGSFNSHYGVKVFGN 184 (457)
T ss_dssp HHTTSSCCCTTCSSCC--GGGBCSSCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHSCTTEEEEEEEEEEEEEEEEEEEE
T ss_pred HHHhccCCCcccCCCC--hhhccccCCcccccCcc-CCCHHHHHHHHHHHHHHHHhcCCCeeEECcEEEEEEEEEEEEEe
Confidence 9999877 55554553 111111121 12343 78999999999999999999999999887 79999999999999
Q ss_pred cCCCeeEEeeeEEEEEEEEEEEeCCeeeeecccccccccccccccccHHHHHHHHHHHHHHhcCCCCCCCeeEEEEeCCc
Q psy9403 432 NDGLIVADIRPLVQLFVTIIVEKNGRREIGNSGCGGRYNYNYFTDMILEKCVSNSVNSALINLEAKPAPAGIMKVVLGPG 511 (737)
Q Consensus 432 S~G~~~~~~~~~~~~~~~~~a~~g~~~~~~~~~~~~r~~~~~l~~~d~~~~~~~a~~~a~~~l~a~~i~~g~y~Vil~p~ 511 (737)
|+|+.+++.++.+++++++++++++.++++|++.+++. ++.+. ++++++++|+++|+.+|+++++|+|+|||||+|.
T Consensus 185 S~G~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~-~~~l~--~~~~i~~~a~~~a~~~L~a~~~~~G~~~Vvl~p~ 261 (457)
T 3tv9_A 185 SHGMLQGYCSTRHSLFSCVIAEENGDMERDYAYTIGRA-MSDLQ--TPEWVGADCARRTLSRLSPRKLSTMKAPVIFANE 261 (457)
T ss_dssp TTTEEEEEEEEEEEEEEEEEEEC--CEEEEEEEEEESS-GGGSC--CHHHHHHHHHHHHHHTSSCBCCCSCEEEEEECHH
T ss_pred CCCCeEEEEeeeEEEEEEEEEeCCCceeeeEEeccccC-hhhcc--CHHHHHHHHHHHHHHhcCCcCCCCcEEEEEECcH
Confidence 99999999999999999999999988999999887775 33232 6999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhccccchhhcCCCccccccCccccCCceEEEEcCCCCCCCCCccccCCCccccceeEEeCceechhhcc
Q psy9403 512 WPGILLHEAIGHGLEGDFNRKGSSAFSNCIGKRIASKEITIVDNGTLANRRGSINIDDEGNPTQCTTLIENGILKGYMQD 591 (737)
Q Consensus 512 a~~~ll~~~~~~~~~a~~v~~g~S~l~~klG~~v~s~~lti~DDP~~~~~~gs~~fDdEGv~t~~~~LIe~GvLk~~l~d 591 (737)
+++.|+|++++ +++++++++|+|+|++|+|++|+|+.|||+|||++|+++||++|||||+|+++++|||||||++||+|
T Consensus 262 ~~~~ll~~~~~-~~~g~~~~~g~S~l~~klGe~v~s~~vti~DDp~~~~~~gs~~fDdEGv~t~~~~lIe~GvL~~~l~d 340 (457)
T 3tv9_A 262 VATGLFGHLVG-AIAGGSVYRKSTFLLDSLGKQILPDWLTIEEHPHLLKGLASTPFDSEGVRTERRDIIKDGILTQWLLT 340 (457)
T ss_dssp HHHHHHHHHHH-HSBHHHHHTTCCTTTTCTTSBCSCTTCCEEECTTCTTCSSCCSSCTTCBCCCCEEEEETTEECCCBCC
T ss_pred HHHHHHHHHHH-hcChHHHhcCCccchhcCCCeecCCceEEEECCCCCCCCCCCCCCCCCCcCCccEEEECCEEcccCcC
Confidence 99999999887 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCccccccCcCCCCcCCceeEEEcCCCCChhHHHHcccCeEEEEecCCCccccccceEEEEeceEEEEeC
Q psy9403 592 IMNARLMNMSITGNARRESFAHIPIPRMTNTYMLNGKFHPEEIISSVKNGLYATNFSGGQVDITNGKFVFSASKAYIIKN 671 (737)
Q Consensus 592 ~~tA~k~g~~~TGna~r~~~~~~P~~~~~Nl~i~~g~~s~eeli~~~~~Gl~V~~~~g~~~np~sGdFS~~~~~g~~Ien 671 (737)
+++|+++|++|||||+ +|+|++|+||+.+++|||+++++||||++++|+++||+||+||+++. ||||||
T Consensus 341 ~~~A~~~G~~~TGna~----------~~~N~~i~~G~~s~eeli~~~~~Gl~v~~~~G~~vn~~tG~Fs~~~~-gy~Ien 409 (457)
T 3tv9_A 341 SYSARKLGLKSTGHAG----------GIHNWRIAGQGLSFEQMLKEMGTGLVVTELMGQGVSAITGDYSRGAA-GFWVEN 409 (457)
T ss_dssp HHHHHHHTSCCCSCTT----------CCCCEEECCCSCCHHHHHHHHCSEEEEEEEESCCCCTTTCEEEEEEE-EEEEET
T ss_pred HHHHHHhCCCCCcccC----------CcccEEEeCCCCCHHHHHhhcCCEEEEEeccCCccCCCCceEEEEEE-EEEEEC
Confidence 9999999999999997 68999999999999999999999999999999999999999999995 999999
Q ss_pred CeeeccccceEEEecHHHHHhhchhccCcceecCCCccccCCCcceecccccceEEEeceEE
Q psy9403 672 GKITYPVKGATLIGHGPNILKKVSMIGNDMKLDPGVGVCGKDGQMVPVGVGQPTLKIDSITV 733 (737)
Q Consensus 672 G~i~~pV~~~~isGn~~~~L~~I~~vg~d~~~~~~~~~cgk~~q~~~~~~~~Psi~v~~~~V 733 (737)
|||++||++++|+||++++|++|++||+|.+|++ +..+|+|+|++|+|
T Consensus 410 Gei~~pV~~~ti~Gn~~~~l~~I~~vg~d~~~~~--------------~~~~psi~i~~m~v 457 (457)
T 3tv9_A 410 GEIQYPVSEITIAGNLKDMWRNIVTVGNDIETRS--------------NIQCGSVLLPEMKI 457 (457)
T ss_dssp TEEEEEEEEEEEEEEHHHHHHTCCEECSCCCCSS--------------SEECCCEEEEEEEC
T ss_pred CEEeeeeeeEEEEEcHHHHHHhhHhhcCCcEecC--------------CcccCeEEECCCCC
Confidence 9999999999999999999999999999999875 34689999999986
No 4
>1vpb_A Putative modulator of DNA gyrase; structural genomics, joint for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Bacteroides thetaiotaomicron} SCOP: d.283.1.1
Probab=100.00 E-value=3.7e-83 Score=719.98 Aligned_cols=428 Identities=20% Similarity=0.286 Sum_probs=389.6
Q ss_pred HHHHHHHHHHHhhCCCCEEEEEEEEEEEEEEEEECCeeeEeEEEEEeeEEEEEEECCeEEEEEcCCCCHHHHHHHHHHHH
Q psy9403 277 EKILLKILGNMFKNKVDYADFYFQFTKNENWILEEGIVKTGNFSINQGVGVRAISGDKTAFFYSDDISKNTLINAVKSTR 356 (737)
Q Consensus 277 ~~~~~~il~~a~~~g~~~~ei~~~~~~~~~i~~~~~~l~~~~~~~~~gigvRv~~~gr~G~a~t~~l~~~~l~~ai~~A~ 356 (737)
++.++++|+.+++.|++++||+++++++.++++++++|+++..+.+.|++|||++|+|+||++++++++++|++++++|+
T Consensus 19 ~~~~~~~l~~a~~~gad~aev~~~~~~~~~v~~~~g~v~~~~~~~~~g~gvRv~~~~~~g~ast~~l~~~~l~~~v~~A~ 98 (451)
T 1vpb_A 19 KKLAQWAMDYALKNGCQAAKVLLYSSSNTSFELRDAKMDRLQQASEGGLSLSLYVDGRYGSISTNRLNRKELETFIKNGI 98 (451)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEC--CCEEEEEEEEEEEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEECCEeeEEEeccceeEEEEEEECCEEEEEEeCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccC-CCcccccccccc-c-cCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHhccCCCEEEEEEEEEEEEEEEEEEEc
Q psy9403 357 SIANQSN-GKIKIIKNIKKI-K-INSLYSFTDT-ISSINIREKIKLLERVEKIARLKDPRVIKVIANLSGEYDVILITRN 432 (737)
Q Consensus 357 ~~A~~~~-~~~~~~~~~~~~-~-~~~~y~~~~~-~~~~~~~e~~e~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~nS 432 (737)
++|+..+ +++..++..... . ....+...+| +.++++++++++++++++.+++.+++|.++.++++....++.|+||
T Consensus 99 ~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~~~~~~~~~~~~~~~nS 178 (451)
T 1vpb_A 99 DSTRYLAKDEARVLADPSRYYKGGKPDLKLYDAKFASLNPDDKIEMAKAVAEEALGKDERIISVGSSYGDGEDFAYRLIS 178 (451)
T ss_dssp HHHTTSCCCTTCCCCCGGGBCCSCCCCCCCSCTTGGGCCHHHHHHHHHHHHHTTTTSCTTEEEEEEEEEEEEEEEEEEET
T ss_pred HHHhccCCCccccCCChhhccccccccccccCccccCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEEEEEC
Confidence 9999876 655445421110 0 0012222223 3478999999999999999999889998888899999999999999
Q ss_pred CCCeeEEeeeEEEEEEEE-EEEeCCeeeeecccccccccccccccccHHHHHHHHHHHHHHhcCCCCCCCeeEEEEeCCc
Q psy9403 433 DGLIVADIRPLVQLFVTI-IVEKNGRREIGNSGCGGRYNYNYFTDMILEKCVSNSVNSALINLEAKPAPAGIMKVVLGPG 511 (737)
Q Consensus 433 ~G~~~~~~~~~~~~~~~~-~a~~g~~~~~~~~~~~~r~~~~~l~~~d~~~~~~~a~~~a~~~l~a~~i~~g~y~Vil~p~ 511 (737)
+|+++++.++.+++++++ ++++++.++++|++.+++ .|+.+ ++++++++|+++|+.+|+++++++|+|||||+|.
T Consensus 179 ~G~~~~~~~~~~~~~~~~~~a~~g~~~~~~~~~~~~~-~~~~l---~~~~~~~~a~~~a~~~l~a~~~~~G~~~Vvl~p~ 254 (451)
T 1vpb_A 179 NGFEGETKSTWYSLSADITIRGEGEARPSAYWYESSL-YMNDL---IKKGIGQKALERVLRKLGQKKVQSGKYTMVVDPM 254 (451)
T ss_dssp TTEEEEEEEEEEEEEEEEEECCSTTCCCEEEEEEEES-SGGGS---CCSSHHHHHHHHHHTTTTCBCCCCEEEEEEECTT
T ss_pred CCceEEEeccEEEEEEEEEEEEcCCcccceEEeeccC-ChHhC---CHHHHHHHHHHHHHHhcCCcCCCCCeEeEEECch
Confidence 999999999999999999 998888899999887776 35544 5789999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhccccchhhcCCCccccccCccccCCceEEEEcCCCCCCCCCccccCCCccccceeEEeCceechhhcc
Q psy9403 512 WPGILLHEAIGHGLEGDFNRKGSSAFSNCIGKRIASKEITIVDNGTLANRRGSINIDDEGNPTQCTTLIENGILKGYMQD 591 (737)
Q Consensus 512 a~~~ll~~~~~~~~~a~~v~~g~S~l~~klG~~v~s~~lti~DDP~~~~~~gs~~fDdEGv~t~~~~LIe~GvLk~~l~d 591 (737)
+++.|+ ++++|+++++++++|+|+|++|+|++|+|+.|||+|||++|+++||++|||||+|+++++|||||||++||+|
T Consensus 255 ~~~~ll-~~~~~~l~~~~v~~g~S~l~~klG~~v~s~~vti~DDp~~~~~~gs~~fDdEGvpt~~~~LIe~GvL~~~l~d 333 (451)
T 1vpb_A 255 NSSRLL-SPMISALNGSALQQKNSFLLNKLNEKIASDRLTLTDEPHLVKASGARYFDNEGIATERRSIFDKGVLNTYFID 333 (451)
T ss_dssp THHHHH-HHHHHTTBHHHHHTTCCTTTTCTTSBCSCTTCCEEECTTCTTCTTCCSBCTTCBBCCCEEEEETTEECCCBCC
T ss_pred HHHHHH-HHHHHhcCcHHHHcCCccccccCCCeecCCCcEEEECCCCCCCCCCCCCCCCCcCCcccEEEECCEEeccccC
Confidence 999999 6899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCccccccCcCCCCcCCceeEEEcCCCCChhHHHHcccCeEEEEecCCCccccccceEEEEeceEEEEeC
Q psy9403 592 IMNARLMNMSITGNARRESFAHIPIPRMTNTYMLNGKFHPEEIISSVKNGLYATNFSGGQVDITNGKFVFSASKAYIIKN 671 (737)
Q Consensus 592 ~~tA~k~g~~~TGna~r~~~~~~P~~~~~Nl~i~~g~~s~eeli~~~~~Gl~V~~~~g~~~np~sGdFS~~~~~g~~Ien 671 (737)
+++|+++|++|||| ||+|++|+||+.+++|||+++++||||++++|+++||+||+||+++. ||||||
T Consensus 334 ~~tA~~~G~~~TGn------------r~~N~~i~pG~~s~eeli~~~~~Gl~v~~~~g~~vd~~tG~fs~g~~-gy~Ien 400 (451)
T 1vpb_A 334 TYNAKKMGVDPTIS------------GSSILVMETGDKNLDGLIAGVEKGILVTGFNGGNNNSSTGDFSYGIE-GFLIEN 400 (451)
T ss_dssp HHHHHHHTSCCCCS------------SCSCEEECCCSCCHHHHHHTCSEEEEEEEEEEEEECTTTCEEEEEEE-EEEEET
T ss_pred HHHHHHcCCCCCCC------------CcccEEEeCCCCCHHHHHhhcCCEEEEEeccccccCCCceeEEEEEE-EEEEEC
Confidence 99999999999999 68999999999999999999999999999999889999999999998 999999
Q ss_pred CeeeccccceEEEecHHHHHhhchhccCcceecCCCccccCCCcceecccccceEEEeceEEecC
Q psy9403 672 GKITYPVKGATLIGHGPNILKKVSMIGNDMKLDPGVGVCGKDGQMVPVGVGQPTLKIDSITVGGT 736 (737)
Q Consensus 672 G~i~~pV~~~~isGn~~~~L~~I~~vg~d~~~~~~~~~cgk~~q~~~~~~~~Psi~v~~~~V~G~ 736 (737)
|||++||++++|+||++++|++|++||+|.++.+ ++++|+|+|++|+|+|+
T Consensus 401 Gei~~pV~~~ti~Gn~~~~l~~I~~vg~d~~~~g--------------~~~~P~i~v~~~~V~G~ 451 (451)
T 1vpb_A 401 GKLTQPVSEMNVTGNLITLWNSLVATGNDPRLNS--------------SWRIPSLVFEGVDFSGL 451 (451)
T ss_dssp TEEEEEEEEEEEEEEHHHHHHTEEEECSCCCTTS--------------SEECCCEEEEEEEEEEC
T ss_pred CEECceeccEEEEecHHHHHHhhHhhcCcceecC--------------CCcCCeEEEccEEEecC
Confidence 9999999999999999999999999999999853 24699999999999995
No 5
>1khd_A Anthranilate phosphoribosyltransferase; type 3 PRT fold, nucleotide binding fold; 1.86A {Pectobacterium carotovorum} SCOP: a.46.2.1 c.27.1.1 PDB: 1kgz_A
Probab=100.00 E-value=2.1e-59 Score=504.32 Aligned_cols=248 Identities=18% Similarity=0.224 Sum_probs=224.3
Q ss_pred CcccCCCHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCC-CCcHH
Q psy9403 1 MRIKGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFG-RITTY 79 (737)
Q Consensus 1 lr~kgEt~eEl~g~~~a~~~~~~~~~~~~~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~-~~gs~ 79 (737)
||+||||+|||+||++|||++..+++.+....+|+|||||||.+| |||||++|+|+|++|+||+|||||+.+| ++|++
T Consensus 55 lr~kget~eEiag~~~am~~~~~~~~~~~~~~vD~~gTGGdg~~t-fNiSt~~A~v~Aa~Gv~VakHGnr~~ss~~~Gsa 133 (345)
T 1khd_A 55 MKMRGERPEEIAGAASALLADAQPFPRPDYDFADIVGTGGDGTNS-INISTASAFVAASCGAKVAKHGNRSVCQPLAGSC 133 (345)
T ss_dssp HHHHCCCHHHHHHHHHHHHHTSCCCCCCSSCCEEEEECCCCSSCB-CCCHHHHHHHHHHHTCCEEEEECC---------C
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCCCCCCCeeeecCCCCCCCCc-cchHHHHHHHHHhCCCcEEEeCCCCCCCCcccHH
Confidence 589999999999999999999988765433479999999999988 9999999999999999999999999999 99999
Q ss_pred HHHHHcCCCCcCCHHHHHHHHHhCCeEeEecccccHHHHHHHHHHhHcCCCCchhhHHHhhcCCCCCCc---eEEEeeCc
Q psy9403 80 EILKKLGYFAVSSKKKAIKYLKLKRLVFMDISILIPELSKLLEIYYMLGIRNSSHLLVKIIQPLSIPAL---RLVSYTHP 156 (737)
Q Consensus 80 dvl~~lGi~~~~~~~~~~~~l~~~g~~fl~~~~~~p~l~~l~~~R~~lg~Rt~~~t~~~ll~Pl~~p~~---~v~Gv~h~ 156 (737)
|+||+||++++.++++++++|++.||+|+|+|.|||+|+++.++|++||+|| +||+|+||.||+. +|+|||||
T Consensus 134 DvLeaLGv~~~~~~~~~~~~l~~~gi~fl~a~~~hPa~k~l~~~R~~Lg~rT----vfn~lgpL~nPa~~~~~v~GV~~~ 209 (345)
T 1khd_A 134 DLLQAFGIRLDMSAEDSRQALDDLNVCFLFAPQYHTGFRHAMPVRQQLKTRT----IFNVLGPLINPARPPKALIGVYSP 209 (345)
T ss_dssp HHHHHTTCCTTCCHHHHHHHHHHHSEEEEEHHHHCGGGGGGHHHHHHHCSCC----THHHHGGGCCTTCCSEEEEECSSG
T ss_pred HHHHhCCCCCCCCHHHHHHHHHHCCEEEEehhhhCHHHHHHHHHHHHhCCCC----HHHHHHHhcCCcCCCeEEEeecCH
Confidence 9999999999999999999999999999999999999999999999999999 7777788777764 99999999
Q ss_pred ccHHHHHHHHhhccCCCeEEEEEeCCCceeecCCCCcEEEEEeeCCeEE--EEcCCCCCCcCCCCC----CCHHHHHHHH
Q psy9403 157 EYLKILSDYFYNEKSLGDIFLMQGTEGEVIPNICNSKQIIHWFHDNKYT--KLTKEQNKEISFPKN----SNINDNVLWI 230 (737)
Q Consensus 157 ~~~~~~~~~~~~~~g~~~~~vv~G~eG~de~s~~~~t~~~~~~~~g~~~--~~~p~~~g~~~~~~~----~~~~~~a~~~ 230 (737)
+|.++|+++++. +|.++++|||| ||+||+|++++|+++++ ++|+++ +|+|++||++.++.+ +++++|++++
T Consensus 210 ~~~~~~a~~l~~-lG~~~a~vv~G-dG~dEis~~~~t~v~~~-~~g~i~~~~i~p~~~G~~~~~~~~l~~g~~~e~a~~~ 286 (345)
T 1khd_A 210 ELVLPIAQALKV-LGYKNAAVVHG-GGMDEVAIHTPTQVAEL-NNGEIESYQLSPQDFGLQSYSLNALQGGTPEENRDIL 286 (345)
T ss_dssp GGHHHHHHHHHH-TTCSEEEEEEE-TTBSSCCSSSCEEEEEE-ETTEEEEEEECGGGGTCCCBCGGGGBCCSHHHHHHHH
T ss_pred HHHHHHHHHHHH-hCCCeEEEEeC-CCcceecCCCceEEEEE-eCCEEEEEEECHHHcCCCcCCccccCCCCHHHHHHHH
Confidence 999999999998 99999999999 99999999999999999 999987 899999999887754 8999999999
Q ss_pred HHHHcCCCCC-ch--hhhhhhccccccccc
Q psy9403 231 QSVLDNKLPI-PS--TIINQVKNCILISQK 257 (737)
Q Consensus 231 ~~vl~G~~~~-~~--~~~~~~~~~l~~~~~ 257 (737)
+++|+|+ .+ +. .+++|+|++|+++|+
T Consensus 287 ~~vL~G~-~~~~~~d~v~~naa~~L~~~g~ 315 (345)
T 1khd_A 287 ARLLQGK-GDAAHARQVAANVALLLKLFGQ 315 (345)
T ss_dssp HHHHTTC-SCHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHCCC-CCccHHHHHHHHHHHHHHHcCC
Confidence 9999998 44 43 689999999999998
No 6
>1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD; nucleoside-phosphorylases; 2.05A {Sulfolobus solfataricus} SCOP: a.46.2.1 c.27.1.1 PDB: 1gxb_A 1zxy_A* 1zyk_A* 2gvq_A* 3gbr_A*
Probab=100.00 E-value=6e-59 Score=500.76 Aligned_cols=262 Identities=22% Similarity=0.282 Sum_probs=236.0
Q ss_pred CcccCCCHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHHH
Q psy9403 1 MRIKGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYE 80 (737)
Q Consensus 1 lr~kgEt~eEl~g~~~a~~~~~~~~~~~~~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~d 80 (737)
||+||||+|||+||++|||++..+++.+ ..+|+|||||||.+| |||||++|+++|++ +||+|||||+.+|++|++|
T Consensus 45 lr~kget~eEiag~~~am~~~~~~~~~~--~~vD~~gTGGdg~~t-fNiSt~~A~v~Aa~-v~VaKHGnR~~ss~~GsaD 120 (345)
T 1o17_A 45 LRMKGESKNEIVGFARAMRELAIKIDVP--NAIDTAGTGGDGLGT-VNVSTASAILLSLV-NPVAKHGNRAVSGKSGSAD 120 (345)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHSCCCCCT--TCEECCC----CCCB-CCHHHHHHHHHTTT-SCEEEEECCCSSSSCSHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCCCC--CceeeCCCCCCCCCc-cchHHHHHHHHHHc-CCEEEECCCCCCCcccHHH
Confidence 5899999999999999999999887654 479999999999998 99999999999999 9999999999999999999
Q ss_pred HHHHcCCCCcCCHHHHHHHHHhCCeEeEecccccHHHHHHHHHHhHcCCCCchhhHHHhhcCCCCCCc---eEEEeeCcc
Q psy9403 81 ILKKLGYFAVSSKKKAIKYLKLKRLVFMDISILIPELSKLLEIYYMLGIRNSSHLLVKIIQPLSIPAL---RLVSYTHPE 157 (737)
Q Consensus 81 vl~~lGi~~~~~~~~~~~~l~~~g~~fl~~~~~~p~l~~l~~~R~~lg~Rt~~~t~~~ll~Pl~~p~~---~v~Gv~h~~ 157 (737)
+||+||++++.+|++++++|++.||+|+|+|.|||+|+++.++|++||+|| +||+|+||.||+. |++|||||+
T Consensus 121 vLEaLGv~~~~~~e~~~~~l~~~gi~fl~a~~~hPa~k~l~~~R~~lg~rT----vfN~lgpL~nPa~~~~ql~Gv~~~~ 196 (345)
T 1o17_A 121 VLEALGYNIIVPPERAKELVNKTNFVFLFAQYYHPAMKNVANVRKTLGIRT----IFNILGPLTNPANAKYQLMGVFSKD 196 (345)
T ss_dssp HHHHHTBCCCCCHHHHHHHHHHHSEEEEEHHHHCGGGGGTHHHHHHHCSCC----GGGGCGGGCCTTCCSEEEEECSSHH
T ss_pred HHHhCCCCCCCCHHHHHHHHHHcCEEEEehHHhChHHHHHHHHHHHhCCCC----HHHHHHHhcCccCCCeEEEEeeCHH
Confidence 999999999999999999999999999999999999999999999999999 8888888888864 999999999
Q ss_pred cHHHHHHHHhhccCCCeEEEEEeCCCceeecCCCCcEEEEEeeCCeEE--EEcCCCCCCcCCCCC----CCHHHHHHHHH
Q psy9403 158 YLKILSDYFYNEKSLGDIFLMQGTEGEVIPNICNSKQIIHWFHDNKYT--KLTKEQNKEISFPKN----SNINDNVLWIQ 231 (737)
Q Consensus 158 ~~~~~~~~~~~~~g~~~~~vv~G~eG~de~s~~~~t~~~~~~~~g~~~--~~~p~~~g~~~~~~~----~~~~~~a~~~~ 231 (737)
|.++|+++++. +|.++++||||.+|+||+++.++|.++++ ++|+++ .|+|+|||+++.|++ +++++|+++++
T Consensus 197 ~~~~~A~~l~~-lG~~~alVv~G~~G~dE~s~~~~t~v~~~-~~g~~~~~~i~p~d~Gl~~~~~~~l~~g~~~e~a~~~~ 274 (345)
T 1o17_A 197 HLDLLSKSAYE-LDFNKIILVYGEPGIDEVSPIGNTFMKIV-SKRGIEEVKLNVTDFGISPIPIEKLIVNSAEDSAIKIV 274 (345)
T ss_dssp HHHHHHHHHTT-SCCSEEEEEEETTTBSSCCSSSEEEEEEE-ETTEEEEEEEEGGGGTCCCCCGGGTBCSSHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCeEEEEECCCCHHHhcccCCcEEEEE-eCCeEEEEEEChhhcCCCCCChhccCCCCHHHHHHHHH
Confidence 99999999998 99999999999999999999999999999 889877 899999999987754 89999999999
Q ss_pred HHHcCCCCCch--hhhhhhcccccccccccCcchhhhhhcCCCCC
Q psy9403 232 SVLDNKLPIPS--TIINQVKNCILISQKNIHPLNIARSILLEPFD 274 (737)
Q Consensus 232 ~vl~G~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 274 (737)
++|+|+ ++|. .+++|+|++|+++|++-+ .....+.+.+..+
T Consensus 275 ~vL~G~-~~~~~d~v~~naa~~L~~~g~~~~-~~eg~~~A~~~i~ 317 (345)
T 1o17_A 275 RAFLGK-DEHVAEFIKINTAVALFALDRVGD-FREGYEYADHLIE 317 (345)
T ss_dssp HHHHTS-CHHHHHHHHHHHHHHHHHTTSSSS-HHHHHHHHHHHHT
T ss_pred HHHCCC-CchHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHH
Confidence 999997 4664 689999999999998866 4444444433333
No 7
>1vqu_A Anthranilate phosphoribosyltransferase 2; 17130499, structur genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI; 1.85A {Nostoc SP}
Probab=100.00 E-value=4e-58 Score=498.85 Aligned_cols=251 Identities=17% Similarity=0.226 Sum_probs=228.2
Q ss_pred CcccCCCHHHHHHHHHHHHhcCCCC--------CCCC--CCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCC
Q psy9403 1 MRIKGESVEEISGFLNAINSLFIPL--------EIPI--SKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIK 70 (737)
Q Consensus 1 lr~kgEt~eEl~g~~~a~~~~~~~~--------~~~~--~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~ 70 (737)
||+||||+|||+||++|||++..++ +.+. ...+|+|||||||.++ |||||++|+|+|++|+||+|||||
T Consensus 69 lr~kGet~eEiag~~~am~~~~~~~~~~~~~~~~~~~~~~~~vD~~gTGGdg~~t-fNiSt~~A~v~Aa~Gv~VaKHGnR 147 (374)
T 1vqu_A 69 LNFKGVSADELTGMAEVLQSQSKMGTGENYSQLPITNSPFSIIDTCGTGGDGSST-FNISTAVAFVAAAYGVPVAKHGNR 147 (374)
T ss_dssp HHHHCCCHHHHHHHHHHHHTTCCC-----------CCSSSCCEEEEECC---CCB-CCHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCccccccccccCccccCCCeeEEeCCCCCCCCc-cchHHHHHHHHHhCCCCEEEECCC
Confidence 5899999999999999999999877 4432 3479999999999998 999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHcCCCCcCCHHHHHHHHHhCCeEeEecccccHHHHHHHHHHhHcCCCCchhhHHHhhcCCCCCCc--
Q psy9403 71 KNFGRITTYEILKKLGYFAVSSKKKAIKYLKLKRLVFMDISILIPELSKLLEIYYMLGIRNSSHLLVKIIQPLSIPAL-- 148 (737)
Q Consensus 71 ~~~~~~gs~dvl~~lGi~~~~~~~~~~~~l~~~g~~fl~~~~~~p~l~~l~~~R~~lg~Rt~~~t~~~ll~Pl~~p~~-- 148 (737)
+.+|++|++|+||+||++++.++++++++|++.||+|+|+|.|||+|+++.++|++||+|| +||+|+||.||+.
T Consensus 148 ~~ss~~GsaDvLEaLGv~~~~~~e~~~~~l~~~gi~fl~a~~~hPa~k~l~~~R~~lg~rT----vfNilgpL~NPa~~~ 223 (374)
T 1vqu_A 148 SASSLTGSADVLEALGVNLGASPEKVQAALQEVGITFLFAPGWHPALKAVATLRRTLRIRT----VFNLLGPLVNPLRPT 223 (374)
T ss_dssp C--CTTCHHHHHHHTTCCTTCCHHHHHHHHHHTSEEEEEETTSSGGGGGGHHHHHHHCSCC----HHHHHGGGCCTTCCS
T ss_pred CCCCCCCHHHHHHhCCCCCCCCHHHHHHHHHHCCEEEEEhHHhCHHHHHHHHHHHHhCCCC----HHHHHHHhcCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999 8888888888874
Q ss_pred -eEEEeeCcccHHHHHHHHhhccCCCeEEEEEeCCCceeecCCCCcEEEEEeeCCeEE--EEcCCCCCCcCCCCC----C
Q psy9403 149 -RLVSYTHPEYLKILSDYFYNEKSLGDIFLMQGTEGEVIPNICNSKQIIHWFHDNKYT--KLTKEQNKEISFPKN----S 221 (737)
Q Consensus 149 -~v~Gv~h~~~~~~~~~~~~~~~g~~~~~vv~G~eG~de~s~~~~t~~~~~~~~g~~~--~~~p~~~g~~~~~~~----~ 221 (737)
||+|||||+|.++|++++++ +|.++++||||.+|+||+++.++|+|+++ ++|+++ .++|++||++..+++ +
T Consensus 224 ~qv~GV~~~~~~~~~a~~l~~-lG~~~alVv~G~~G~dE~s~~~~t~v~~~-~~g~~~~~~i~p~d~Gl~~~~~~~l~~g 301 (374)
T 1vqu_A 224 GQVVGLFTPKLLTTVAQALDN-LGKQKAIVLHGRERLDEAGLGDLTDLAVL-SDGELQLTTINPQEVGVTPAPIGALRGG 301 (374)
T ss_dssp EEEEECSCGGGHHHHHHHHHH-TTCSEEEEEEETTTBSSCCSSSCEEEEEE-ETTEEEEEEECGGGGTCCCCCGGGGBCC
T ss_pred ceEEeecCHHHHHHHHHHHHH-cCCCeEEEEECCCCccccccCCceEEEEE-eCCEEEEEEECHHHCCCccccccccCCC
Confidence 99999999999999999998 99999999999999999999999999999 899987 899999999877653 7
Q ss_pred CHHHHHHHHHHHHcCCCCCc--h-hhhhhhccccccccccc
Q psy9403 222 NINDNVLWIQSVLDNKLPIP--S-TIINQVKNCILISQKNI 259 (737)
Q Consensus 222 ~~~~~a~~~~~vl~G~~~~~--~-~~~~~~~~~l~~~~~~~ 259 (737)
++++|+++++++|+|+ .+| . .+++|+|++|+++|++-
T Consensus 302 ~~~e~a~~~~~vL~G~-~~~~~d~~v~~naa~~L~~~g~~~ 341 (374)
T 1vqu_A 302 DVQENAEILKAVLQGK-GTQAQQDAVALNAALALQVAGAVP 341 (374)
T ss_dssp SHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHHTSSC
T ss_pred CHHHHHHHHHHHHCCC-CCchHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999998 556 3 68899999999999876
No 8
>2elc_A Trp D, anthranilate phosphoribosyltransferase; structural genomics, NPPSFA, national project O structural and functional analyses; 1.55A {Thermus thermophilus} SCOP: a.46.2.1 c.27.1.1 PDB: 1v8g_A
Probab=100.00 E-value=2.9e-58 Score=492.86 Aligned_cols=249 Identities=18% Similarity=0.251 Sum_probs=232.4
Q ss_pred CcccCCCHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHHH
Q psy9403 1 MRIKGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYE 80 (737)
Q Consensus 1 lr~kgEt~eEl~g~~~a~~~~~~~~~~~~~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~d 80 (737)
||+||||+|||+||++|||++..+++.+....+|+|||||||.++ |||||++|+|+|++|+||+|||||+.+|++|++|
T Consensus 42 lr~kget~~Eiag~~~am~~~~~~~~~~~~~~vD~~gTGGdg~~t-fNiSt~~a~v~Aa~Gv~V~kHGnr~~ss~~GsaD 120 (329)
T 2elc_A 42 LSLRGERPHEIAAMARAMREAARPLRVHRRPLLDIVGTGGDGKGL-MNLSTLAALVAAAGGVAVAKHGNRAASSRAGSAD 120 (329)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHSCCCCCCCSSEEEEEECCCCSSCC-CCCHHHHHHHHHHTTCEEEEEECCCTTTTCSHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCCCCCCCeeEEcCCCCCCCCc-cccHHHHHHHHHhCCCCEEEeCCCCCCCcccHHH
Confidence 589999999999999999999988765423479999999999999 9999999999999999999999999999999999
Q ss_pred HHHHcCCCCcCCHHHHHHHHHhCCeEeEecccccHHHHHHHHHHhHcCCCCchhhHHHhhcCCCCCCc---eEEEeeCcc
Q psy9403 81 ILKKLGYFAVSSKKKAIKYLKLKRLVFMDISILIPELSKLLEIYYMLGIRNSSHLLVKIIQPLSIPAL---RLVSYTHPE 157 (737)
Q Consensus 81 vl~~lGi~~~~~~~~~~~~l~~~g~~fl~~~~~~p~l~~l~~~R~~lg~Rt~~~t~~~ll~Pl~~p~~---~v~Gv~h~~ 157 (737)
+||+||++++.++++++++|++.||+|+|+|.|||+|+++.++|++||+|| +||+|+||.||+. ||+|||||+
T Consensus 121 vLeaLG~~~~~~~~~~~~~l~~~g~~fl~a~~~hPa~k~~~~~R~~lg~rT----vfn~lgpL~nPa~~~~~v~Gv~~~~ 196 (329)
T 2elc_A 121 LLEALGVDLEAPPERVGEAIEELGFGFLFARVFHPAMRHVAPVRAELGVRT----VFNLLGPLTNPAGADAYVLGVFSPE 196 (329)
T ss_dssp HHHHTTCCTTCCHHHHHHHHHHHSEEEEEHHHHCGGGGGTHHHHHHHCSCC----HHHHHTTTCCTTCCCEEEEECSSGG
T ss_pred HHHhCCCCCCCCHHHHHHHHHHCCEEEEEhHHhCHHHHHHHHHHHHhCCCC----HHHHHHHhcCccCCceeEEeeeCHH
Confidence 999999999999999999999999999999999999999999999999999 9999999998864 999999999
Q ss_pred cHHHHHHHHhhccCCCeEEEEEeCCCceeecCCCCcEEEEEeeCCeEEEEcCCCCCCcCCCCC----CCHHHHHHHHHHH
Q psy9403 158 YLKILSDYFYNEKSLGDIFLMQGTEGEVIPNICNSKQIIHWFHDNKYTKLTKEQNKEISFPKN----SNINDNVLWIQSV 233 (737)
Q Consensus 158 ~~~~~~~~~~~~~g~~~~~vv~G~eG~de~s~~~~t~~~~~~~~g~~~~~~p~~~g~~~~~~~----~~~~~~a~~~~~v 233 (737)
|.++|+++++. +| ++++|||| +|+||++ .++|+|+++ ++|+ .+++|++||++..+++ +++++|+++++++
T Consensus 197 ~~~~~a~~l~~-lG-~~alVv~G-~G~dE~~-~~~t~v~~~-~~g~-~~i~p~~~G~~~~~~~~l~~g~~~e~a~~~~~v 270 (329)
T 2elc_A 197 WLAPMAEALER-LG-ARGLVVHG-EGADELV-LGENRVVEV-GKGA-YALTPEEVGLKRAPLEALKGGGPEENAALARRL 270 (329)
T ss_dssp GHHHHHHHHHH-TT-CEEEEEEE-TTBSSCC-SSCEEEEET-TTEE-EEECGGGGTCCCCCGGGGCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cC-CCEEEEeC-CChhhhc-cCCeEEEEE-ECCE-EEECHHHcCCccCCcccCCCCCHHHHHHHHHHH
Confidence 99999999998 99 99999999 9999999 999999998 8888 7799999999877643 8999999999999
Q ss_pred HcCCCCCch--hhhhhhcccccccccccC
Q psy9403 234 LDNKLPIPS--TIINQVKNCILISQKNIH 260 (737)
Q Consensus 234 l~G~~~~~~--~~~~~~~~~l~~~~~~~~ 260 (737)
|+|+.++|. .+++|+|++|+++|++-+
T Consensus 271 L~G~~~~~~~d~v~~naa~~L~~~g~~~~ 299 (329)
T 2elc_A 271 LKGEEKGPLADAVALAAGAGFYAAGKTPS 299 (329)
T ss_dssp HTTCCCSHHHHHHHHHHHHHHHHTTSSSS
T ss_pred HCCCCCCcHHHHHHHHHHHHHHHcCCCCC
Confidence 999832664 699999999999998765
No 9
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=100.00 E-value=7.5e-58 Score=497.24 Aligned_cols=252 Identities=14% Similarity=0.206 Sum_probs=232.1
Q ss_pred CcccCCCHHHHHHHHHHHHhcCCCCCCCC--CCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcH
Q psy9403 1 MRIKGESVEEISGFLNAINSLFIPLEIPI--SKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITT 78 (737)
Q Consensus 1 lr~kgEt~eEl~g~~~a~~~~~~~~~~~~--~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs 78 (737)
||+||||+|||+||++|||++..+++.+. ...+|+|||||||++| |||||++|+|+|++|+||+|||||+.+|++|+
T Consensus 68 lr~kGet~eEi~g~~~am~~~~~~v~~~~~~~~~vD~~gTGGdg~~T-~niSt~~A~v~Aa~Gv~VaKHGnR~~ss~~Gs 146 (377)
T 3r88_A 68 MTMKAPTADEVGELAGVMLSHAHPLPADTVPDDAVDVVGTGGDGVNT-VNLSTMAAIVVAAAGVPVVKHGNRAASSLSGG 146 (377)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHSCCCCTTCSCTTCEEEEECCCCSCCB-CCHHHHHHHHHHHTTCCEEEEECCCSSSSCCH
T ss_pred HHHhCcCHHHHHHHHHHHHHhCCcCCCccCCCCCeEEeCCCCCCcCc-cccHHHHHHHHHhcCCeEEeECCCCCCCcccH
Confidence 58999999999999999999998776532 3579999999999998 99999999999999999999999999999999
Q ss_pred HHHHHHcCCCCcCCHHHHHHHHHhCCeEeEecccccHHHHHHHHHHhHcCCCCchhhHHHhhcCCCCCCc---eEEEeeC
Q psy9403 79 YEILKKLGYFAVSSKKKAIKYLKLKRLVFMDISILIPELSKLLEIYYMLGIRNSSHLLVKIIQPLSIPAL---RLVSYTH 155 (737)
Q Consensus 79 ~dvl~~lGi~~~~~~~~~~~~l~~~g~~fl~~~~~~p~l~~l~~~R~~lg~Rt~~~t~~~ll~Pl~~p~~---~v~Gv~h 155 (737)
+|+||+||+++++++++++++|++.||+|+|+|.|||+|+++.++|++||+|| +||+|+||.||+. |++||||
T Consensus 147 aDvLEaLGv~~~l~~e~~~~~l~~~gi~fl~a~~~hPa~k~l~~vR~~Lg~rT----ifN~lgpL~NPa~~~~~liGv~~ 222 (377)
T 3r88_A 147 ADTLEALGVRIDLGPDLVARSLAEVGIGFCFAPRFHPSYRHAAAVRREIGVPT----VFNLLGPLTNPARPRAGLIGCAF 222 (377)
T ss_dssp HHHHHHTTCCCCCCHHHHHHHHHHHSEEEEEHHHHCGGGHHHHHHHHHHCSCC----GGGGHHHHCCTTCCSEEEEECSC
T ss_pred HHHHHHcCCCcccchHHHHHHHHHhccccccchhhCHHHHHHHHHHHHhccCc----hhhhHHHhcCcccccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999 6666666666653 9999999
Q ss_pred cccHHHHHHHHhhccCCCeEEEEEeCCCceeecCCCCcEEEEEeeCCeEE--EEcCCCCCCcCCCCC----CCHHHHHHH
Q psy9403 156 PEYLKILSDYFYNEKSLGDIFLMQGTEGEVIPNICNSKQIIHWFHDNKYT--KLTKEQNKEISFPKN----SNINDNVLW 229 (737)
Q Consensus 156 ~~~~~~~~~~~~~~~g~~~~~vv~G~eG~de~s~~~~t~~~~~~~~g~~~--~~~p~~~g~~~~~~~----~~~~~~a~~ 229 (737)
|+|.++|+++++. ++ ++++||||.||+||+++.++|+++++ ++|+++ +++|+|||++.++.+ +++++||++
T Consensus 223 ~~l~~~~a~~l~~-~~-~~a~vv~G~dGlDEis~~~~t~v~~~-~~g~i~~~~i~P~d~Gl~~~~~~~l~gg~~~ena~~ 299 (377)
T 3r88_A 223 ADLAEVMAGVFAA-RR-SSVLVVHGDDGLDELTTTTTSTIWRV-AAGSVDKLTFDPAGFGFARAQLDQLAGGDAQANAAA 299 (377)
T ss_dssp TTTHHHHHHHHHH-TT-CEEEEEEETTSCSSCCSSSCEEEEEE-ETTEEEEEEECGGGGTCCCCCGGGGBCCSHHHHHHH
T ss_pred HHHhHHHHHHHHh-cC-CeeEEecCCCCCceeecccccceEEE-eeceeEEEeccccccCCCcCCHHhccCCCHHHHHHH
Confidence 9999999999998 77 79999999999999999999999999 999987 899999999987765 899999999
Q ss_pred HHHHHcCCCCCch--hhhhhhcccccccccccCc
Q psy9403 230 IQSVLDNKLPIPS--TIINQVKNCILISQKNIHP 261 (737)
Q Consensus 230 ~~~vl~G~~~~~~--~~~~~~~~~l~~~~~~~~~ 261 (737)
++++|+|+ ++|. .+++|+|++|+++|+....
T Consensus 300 ~~~vL~G~-~~~~~d~v~lNaa~~l~~~g~~~~~ 332 (377)
T 3r88_A 300 VRAVLGGA-RGPVRDAVVLNAAGAIVAHAGLSSR 332 (377)
T ss_dssp HHHHHTTC-CSHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHCCC-CcHHHHHHHHHHHHHHHHhcCcccc
Confidence 99999998 6774 6899999999998876553
No 10
>4hkm_A Anthranilate phosphoribosyltransferase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; HET: MSE CXS; 1.95A {Xanthomonas campestris PV}
Probab=100.00 E-value=2.9e-58 Score=497.60 Aligned_cols=252 Identities=17% Similarity=0.242 Sum_probs=216.8
Q ss_pred CcccCCCHHHHHHHHHHHHhcCCCCCCCC-CCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHH
Q psy9403 1 MRIKGESVEEISGFLNAINSLFIPLEIPI-SKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTY 79 (737)
Q Consensus 1 lr~kgEt~eEl~g~~~a~~~~~~~~~~~~-~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~ 79 (737)
||+||||+||++||++|||++..+++.+. ...+|+|||||||++| |||||++|+|+|++|+||+|||||+.++++|++
T Consensus 48 lr~kget~eEi~g~~~am~~~~~~v~~~~~~~~vD~~gTGGdg~~t-~niSt~~a~v~Aa~G~~V~khG~r~~ss~~Gsa 126 (346)
T 4hkm_A 48 LRVKKETIGEIAGAATVMREFSRRVEVTDRRHMVDIVGTGGDGSHT-FNISTCAMFVAAAGGAKVAKHGNRSVSSKSGSA 126 (346)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHSCCCCCSCCTTEEEEECC------C-CCHHHHHHHHHHHTTCEEEEEC---------CH
T ss_pred HHHHCcCHHHHHHHHHHHHHhCCCCCCCCCccceeecCCCCCCccc-cCcHHHHHHHHHhcCCCeeecCCCCCCCCcCHH
Confidence 58999999999999999999998887543 3468999999999998 999999999999999999999999999999999
Q ss_pred HHHHHcCCCCcCCHHHHHHHHHhCCeEeEecccccHHHHHHHHHHhHcCCCCchhhHHHhhcCCCCCCc---eEEEeeCc
Q psy9403 80 EILKKLGYFAVSSKKKAIKYLKLKRLVFMDISILIPELSKLLEIYYMLGIRNSSHLLVKIIQPLSIPAL---RLVSYTHP 156 (737)
Q Consensus 80 dvl~~lGi~~~~~~~~~~~~l~~~g~~fl~~~~~~p~l~~l~~~R~~lg~Rt~~~t~~~ll~Pl~~p~~---~v~Gv~h~ 156 (737)
|+||+||+++++++++++++|++.||+|+|+|.|||+|+++.++|++||+|| +||+|+||.||+. |++|||||
T Consensus 127 D~LeaLG~~~~ls~~~~~~~l~~~g~~fl~a~~~~Pa~k~l~~~R~~lg~rT----~fn~lgpL~nPa~~~~~v~Gv~~~ 202 (346)
T 4hkm_A 127 DALEALGAVIELQPEQVAASLAQTGIGFMYAPVHHPAMKVVAPVRREMGVRT----IFNILGPLTNPAGSPNILMGVFHP 202 (346)
T ss_dssp HHHHTTTCCCCCCHHHHHHHHHHHSEEEECHHHHCGGGGGTHHHHHHHCSCC----THHHHGGGCCTTCCSEEEEECSST
T ss_pred HHHHHcCCCcccCHHHHHHHHHhcCcchhchhhhChhHHHHhhheeccCCCc----hhhhcccccCCCCCcceEeeccCH
Confidence 9999999999999999999999999999999999999999999999999999 6666666666653 99999999
Q ss_pred ccHHHHHHHHhhccCCCeEEEEEeCCCceeecCCCCcEEEEEeeCCeEE--EEcCCCCCCcCCCCC----CCHHHHHHHH
Q psy9403 157 EYLKILSDYFYNEKSLGDIFLMQGTEGEVIPNICNSKQIIHWFHDNKYT--KLTKEQNKEISFPKN----SNINDNVLWI 230 (737)
Q Consensus 157 ~~~~~~~~~~~~~~g~~~~~vv~G~eG~de~s~~~~t~~~~~~~~g~~~--~~~p~~~g~~~~~~~----~~~~~~a~~~ 230 (737)
+|.++|+++++. +|.++++||||.||+||+++.++|+++++ ++|+++ .++|+|||++..+.+ +++++|++++
T Consensus 203 ~~~~~~a~~l~~-lg~~~a~vv~g~~G~dEis~~~~t~v~~~-~~g~i~~~~i~P~d~Gl~~~~~~~~~~g~~~e~a~~~ 280 (346)
T 4hkm_A 203 DLVGIQARVLQE-LGAERALVVWGRDGMDELSLGAGTLVGEL-RDGQVHEYEVHPEDFGIAMSASRNLKVADAAESRAML 280 (346)
T ss_dssp HHHHHHHHHHHH-TTCSEEEEEEETTTBSSCCSSSCEEEEEE-ETTEEEEEEECGGGGTCCCCC---------CCHHHHH
T ss_pred HHhHHHHHHHHH-cCCCeEEEEecCCCchhhhhccCceEEEE-eCCceeEecCCHHHcCCccCcccccCCCCHHHHHHHH
Confidence 999999999998 99999999999999999999999999999 999987 899999999977654 8999999999
Q ss_pred HHHHcCCCCCch--hhhhhhcccccccccccC
Q psy9403 231 QSVLDNKLPIPS--TIINQVKNCILISQKNIH 260 (737)
Q Consensus 231 ~~vl~G~~~~~~--~~~~~~~~~l~~~~~~~~ 260 (737)
+++|+|+ ++|. .+++|+|++|+++|++-+
T Consensus 281 ~~vl~g~-~~~~~d~v~lnaa~~L~~~g~a~s 311 (346)
T 4hkm_A 281 LQVLDNV-PGPALDIVALNAGAALYVAGVADS 311 (346)
T ss_dssp HHHHTTC-CSHHHHHHHHHHHHHHHHTTSSSS
T ss_pred HHHHCCC-CCHHHHHHHHHHHHHHHHcCCCCC
Confidence 9999998 6774 689999999999999877
No 11
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=100.00 E-value=8.7e-40 Score=356.67 Aligned_cols=243 Identities=13% Similarity=0.059 Sum_probs=201.2
Q ss_pred CcccCCCHHHHHHHHHHHHhcCCCCCCCC-CCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcHH
Q psy9403 1 MRIKGESVEEISGFLNAINSLFIPLEIPI-SKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTY 79 (737)
Q Consensus 1 lr~kgEt~eEl~g~~~a~~~~~~~~~~~~-~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs~ 79 (737)
||+||||+||++||++|||++..+++.+. ...+|+|||||||. ||||++|+++|+||+||+|||||+.+|++|++
T Consensus 45 l~~kGet~eEiag~a~aM~~~~~~l~~~~~~~~vD~~gTGGdG~----niSt~~a~vvAa~Gv~VaKhGnR~~ss~~Gsa 120 (423)
T 2dsj_A 45 AFLRGLDPEETLWLTETMARSGKVLDLSGLPHPVDKHSSGGVGD----KVSLVVGPILAASGCTFAKMSGRGLAHTGGTI 120 (423)
T ss_dssp HHHHCCCHHHHHHHHHHHHTSSBCCCCTTSSSBEEEEEESSSCC----STHHHHHHHHHTTTCBEEEECCCCBTTBCCHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCCccccCCceeEecCCCCCc----cHHHHHHHHHHhCCCcEEEECCCCCCCCccHH
Confidence 58999999999999999999988776542 12799999999987 79999999999999999999999999999999
Q ss_pred HHHHHc-CCCCcCCHHHHHHHHHhCCeEeEec-ccccHHHHHHHHHHhHcC-CCCchhhHHHhhcCCCC---CC---ceE
Q psy9403 80 EILKKL-GYFAVSSKKKAIKYLKLKRLVFMDI-SILIPELSKLLEIYYMLG-IRNSSHLLVKIIQPLSI---PA---LRL 150 (737)
Q Consensus 80 dvl~~l-Gi~~~~~~~~~~~~l~~~g~~fl~~-~~~~p~l~~l~~~R~~lg-~Rt~~~t~~~ll~Pl~~---p~---~~v 150 (737)
|+||+| |++++++++++.++|++.||+|+++ |.|||+|+++.++|++|| +|| +||+++|+.| |+ ++|
T Consensus 121 DvLEaL~Gv~i~l~~e~~~~~l~~~Gi~f~~~~~~~~PA~k~l~~lR~~lgtv~T----i~nilgpl~nkK~pag~~~~v 196 (423)
T 2dsj_A 121 DKLESVPGWRGEMTEAEFLERARRVGLVIAAQSPDLAPLDGKLYALRDVTATVES----VPLIASSIMSKKLAAGARSIV 196 (423)
T ss_dssp HHHTTSTTCCCCCCHHHHHHHHHHTSEEEESCGGGBSHHHHHHHHHHHTTTCCCC----HHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHhCCCCCCCCCHHHHHHHHHHcCEEEEecccccChHHHHHHHHHHHhcccCc----HHHhHHHHhcCccCCCCCeEE
Confidence 999999 9999999999999999999999877 799999999999999999 799 9999999887 43 389
Q ss_pred E------Eee--CcccHHHHHHHHhhccCCCeEEEEEeCCCceeecCCCCcEEEEEeeCCeEEEEcCCCCCCcCCCCCCC
Q psy9403 151 V------SYT--HPEYLKILSDYFYNEKSLGDIFLMQGTEGEVIPNICNSKQIIHWFHDNKYTKLTKEQNKEISFPKNSN 222 (737)
Q Consensus 151 ~------Gv~--h~~~~~~~~~~~~~~~g~~~~~vv~G~eG~de~s~~~~t~~~~~~~~g~~~~~~p~~~g~~~~~~~~~ 222 (737)
+ |+| ++++.+.+++++.. +|.. .+.++++++ ++|+ +.+|+ .-++
T Consensus 197 ldV~~G~Gaf~~~~~~~~~lA~~l~~-lg~~----------------~G~~~v~~l-~dg~------~plg~----~~G~ 248 (423)
T 2dsj_A 197 LDVKVGRGAFMKTLEEARLLAKTMVA-IGQG----------------AGRRVRALL-TSME------APLGR----AVGN 248 (423)
T ss_dssp EEEEESSSTTCBCHHHHHHHHHHHHH-HHHH----------------TTCEEEEEE-EECS------SCSSS----EEES
T ss_pred EEeccCCCcccCCHHHHHHHHHHHHH-HHHH----------------cCCeEEEEE-cCCC------Ccccc----cCCC
Confidence 8 669 89999999999987 7642 267778888 6665 22443 1279
Q ss_pred HHHHHHHHHHHHcCCCCCc--hhhhhhhcccccccccccCcchhhhhhcCCCCCCCHHHHHHHHH
Q psy9403 223 INDNVLWIQSVLDNKLPIP--STIINQVKNCILISQKNIHPLNIARSILLEPFDLDEKILLKILG 285 (737)
Q Consensus 223 ~~~~a~~~~~vl~G~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 285 (737)
+.+|+++++ +|+|+.+.+ ..+++|++++|+++|+ +. .+++++|-+ |--.+.++++++
T Consensus 249 a~E~ae~i~-vL~G~g~~~~~d~vl~nAa~~L~~ag~--~l-~~A~~~l~s--G~A~~kl~~li~ 307 (423)
T 2dsj_A 249 AIEVREAIE-ALKGEGPGDLLEVALALAEEALRLEGL--DP-ALARKALEG--GAALEKFRAFLE 307 (423)
T ss_dssp HHHHHHHHH-HHTTCSCHHHHHHHHHHHHHHHHHTTC--CT-HHHHHHHHT--SHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHCCCCchhHHHHHHHHHHHHHHHcCC--CH-HHHHHHHhc--CcHHHHHHHHHH
Confidence 999999995 999973322 2588999999999998 42 555555543 333333444433
No 12
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=100.00 E-value=6.3e-39 Score=351.14 Aligned_cols=219 Identities=12% Similarity=0.052 Sum_probs=193.9
Q ss_pred CcccCCCHHHHHHHHHHHHhcCCCCCCCC--CCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcH
Q psy9403 1 MRIKGESVEEISGFLNAINSLFIPLEIPI--SKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITT 78 (737)
Q Consensus 1 lr~kgEt~eEl~g~~~a~~~~~~~~~~~~--~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs 78 (737)
||+||||+|||+||++||+++..+++.+. ...+|+|||||||.++ ||++|+++|++|+||+|||||+.+|++|+
T Consensus 48 lr~kGet~eEiag~~~Am~~~~~~~~~~~~~~~~vD~~gTGGdG~~t----St~~A~vvAa~Gv~VaKHGnRa~ss~~Gs 123 (436)
T 3h5q_A 48 IYFQDMNDDERVALTMAMVNSGDMIDLSDIKGVKVDKHSTGGVGDTT----TLVLAPLVAAVDVPVAKMSGRGLGHTGGT 123 (436)
T ss_dssp HHHHCCCHHHHHHHHHHHHTTSCCCCCTTSCSCCEEEEECCCTTCCH----HHHHHHHHHHTTCCEEEECCCCSSSSCCH
T ss_pred HHHcCCCHHHHHHHHHHHHHhCCcCCccccCCCceeecCCCCCCCCh----HHHHHHHHHhCCCCEEeECCCCCCCcccH
Confidence 58999999999999999999988776542 3579999999999865 99999999999999999999999999999
Q ss_pred HHHHHHc-CCCCcCCHHHHHHHHHhCCeEeEe-cccccHHHHHHHHHHhHcCCCCchhhHHHhhcCCCC--------CCc
Q psy9403 79 YEILKKL-GYFAVSSKKKAIKYLKLKRLVFMD-ISILIPELSKLLEIYYMLGIRNSSHLLVKIIQPLSI--------PAL 148 (737)
Q Consensus 79 ~dvl~~l-Gi~~~~~~~~~~~~l~~~g~~fl~-~~~~~p~l~~l~~~R~~lg~Rt~~~t~~~ll~Pl~~--------p~~ 148 (737)
+|+||+| |++++++++++.++|++.||+|++ +|.|||+|+++.++|++ +|| |||+ ||.| |+.
T Consensus 124 aDvLEaLpGi~~~ls~e~~~~~l~~~g~~fl~~a~~~~Pa~~~l~~lR~~--~~T----vfni--PLinaSimSKKlpag 195 (436)
T 3h5q_A 124 IDKLEAIDGFHVEIDEATFVKLVNENKVAVVGQSGNLTPADKKLYALRDV--TGT----VNSI--PLIASSIMSKKIAAG 195 (436)
T ss_dssp HHHHTTSTTCCCCCCHHHHHHHHHHHSEEEECCCSSSCHHHHHHHHHHHT--TTC----SSCH--HHHHHHHHHHHHHTT
T ss_pred HHHHHhCcCCCCCCCHHHHHHHHHHcCCEEEccccccCHHHHHHHHHHhc--cCC----cCCh--hhhccchhccccccC
Confidence 9999999 999999999999999999999998 79999999999999999 688 6666 6666 442
Q ss_pred ---eEEEee--------CcccHHHHHHHHhhccCCCeEEEEEeCCCceeecCCCCcEEEEEeeCCeEEEEcCCCCCCcCC
Q psy9403 149 ---RLVSYT--------HPEYLKILSDYFYNEKSLGDIFLMQGTEGEVIPNICNSKQIIHWFHDNKYTKLTKEQNKEISF 217 (737)
Q Consensus 149 ---~v~Gv~--------h~~~~~~~~~~~~~~~g~~~~~vv~G~eG~de~s~~~~t~~~~~~~~g~~~~~~p~~~g~~~~ 217 (737)
+|+||| +++..+.++++|.. +|.+. |+++++++ ++|. +| ||+.
T Consensus 196 ~~~~vlgV~~G~gaf~~~~~~a~~lA~~l~~-lG~~~----------------G~~~v~~l-t~~~----~P--lG~~-- 249 (436)
T 3h5q_A 196 ADAIVLDVKTGSGAFMKTLEDAEALAHAMVR-IGNNV----------------GRNTMAII-SDMN----QP--LGRA-- 249 (436)
T ss_dssp CSEEEEEEEESTTSSBCSHHHHHHHHHHHHH-HHHHH----------------TCCEEEEE-EECS----SC--SSSE--
T ss_pred CCeEEEeeecCccccCCCHHHHHHHHHHHHH-hhhhc----------------CCeEEEEE-cCCC----CC--CCCC--
Confidence 999999 99999999999998 87543 88888998 7776 67 8875
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCCch--hhhhhhcccccccccccC
Q psy9403 218 PKNSNINDNVLWIQSVLDNKLPIPS--TIINQVKNCILISQKNIH 260 (737)
Q Consensus 218 ~~~~~~~~~a~~~~~vl~G~~~~~~--~~~~~~~~~l~~~~~~~~ 260 (737)
-+++.+|++ ++++|+|+.+.+. .+++|++++|+++|++-+
T Consensus 250 --~G~~~E~ae-~~~vL~G~~~~~~~d~vl~nAa~~L~~ag~a~~ 291 (436)
T 3h5q_A 250 --IGNALELQE-AIDTLKGQGPKDLTELVLTLGSQMVVLANKAET 291 (436)
T ss_dssp --EESHHHHHH-HHHHHTTCSCHHHHHHHHHHHHHHHHHTTSCSS
T ss_pred --CCCHHHHHH-HHHHHCCCCCccHHHHHHHHHHHHHHhcCCcCC
Confidence 478999999 9999999854442 588999999999999866
No 13
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=100.00 E-value=1.8e-37 Score=341.51 Aligned_cols=226 Identities=12% Similarity=0.025 Sum_probs=181.5
Q ss_pred CcccCCCHHHHHHHHHHHHhcCCCCCCCC----CCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCC
Q psy9403 1 MRIKGESVEEISGFLNAINSLFIPLEIPI----SKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRI 76 (737)
Q Consensus 1 lr~kgEt~eEl~g~~~a~~~~~~~~~~~~----~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~ 76 (737)
||+||||+|||+||++|||++..+++.+. ...+|+|||||||.+ |||++|+++|++|+||+|||||+.+|++
T Consensus 46 lr~kGet~eEiag~~~Am~~~~~~~~~~~~~~~~~~vD~~gTGGdG~~----iSt~~A~vvAa~Gv~VaKHGnR~~ss~~ 121 (440)
T 2tpt_A 46 IFFHDMTMPERVSLTMAMRDSGTVLDWKSLHLNGPIVDKHSTGGVGDV----TSLMLGPMVAACGGYIPMISGRGLGHTG 121 (440)
T ss_dssp HHHHCCCHHHHHHHHHHHHHTSBCCCCTTTTCSSCBEEEEECCCSSCC----HHHHHHHHHHHTTCBEEEEECCCCTTSC
T ss_pred HHHcCCCHHHHHHHHHHHHHhCCcCCCcccccCCCeeeeCCCCCCCcc----HHHHHHHHHHhCCCcEEEECCCCCCCcc
Confidence 58999999999999999999998876542 147999999999876 8999999999999999999999999999
Q ss_pred cHHHHHHHc-CCCCcCCHHHHHHHHHhCCeEeEec-ccccHHHHHHHHHHhHcCCCCchhhHHHhhcCCCCCCceEEEee
Q psy9403 77 TTYEILKKL-GYFAVSSKKKAIKYLKLKRLVFMDI-SILIPELSKLLEIYYMLGIRNSSHLLVKIIQPLSIPALRLVSYT 154 (737)
Q Consensus 77 gs~dvl~~l-Gi~~~~~~~~~~~~l~~~g~~fl~~-~~~~p~l~~l~~~R~~lg~Rt~~~t~~~ll~Pl~~p~~~v~Gv~ 154 (737)
|++|+||+| |++++++++++.++|++.||+|+++ |.|||+|+++.++|++| || +||+ ||.||
T Consensus 122 GsaDvLEaL~Gv~~~ls~e~~~~~l~~~G~~fl~a~~~~hPA~k~l~~lR~~l--rT----vfNi--PLin~-------- 185 (440)
T 2tpt_A 122 GTLDKLESIPGFDIFPDDNRFREIIKDVGVAIIGQTSSLAPADKRFYATRDIT--AT----VDSI--PLITA-------- 185 (440)
T ss_dssp CHHHHHTTSTTCCSCCCHHHHHHHHHHTSEEEEECCTTBSHHHHHHHHHHHHT--TC----CCCH--HHHHH--------
T ss_pred cHHHHHHhCcCCCCCCCHHHHHHHHHHcCEEEEcCchhhCHHHHHHHHHHHhh--CC----ccCh--hhcCC--------
Confidence 999999999 9999999999999999999999999 79999999999999999 88 7777 88774
Q ss_pred CcccHHHHHHHHhhccCCCeEEEE---EeC----CCceeecCCCCcEEEEEeeCCeEE--EEcCCCCCCcCCCC---CCC
Q psy9403 155 HPEYLKILSDYFYNEKSLGDIFLM---QGT----EGEVIPNICNSKQIIHWFHDNKYT--KLTKEQNKEISFPK---NSN 222 (737)
Q Consensus 155 h~~~~~~~~~~~~~~~g~~~~~vv---~G~----eG~de~s~~~~t~~~~~~~~g~~~--~~~p~~~g~~~~~~---~~~ 222 (737)
..|.+-+.. |.+ ++|+ ||. +|+||+++.+++.++....-|.-+ .++.- . .|+ -++
T Consensus 186 -----s~lskk~A~--G~~-alVvdVk~G~gaf~~~~de~~~la~t~v~~~~~~G~~~~a~itd~---~--~plg~~~G~ 252 (440)
T 2tpt_A 186 -----SILAKKLAE--GLD-ALVMDVKVGSGAFMPTYELSEALAEAIVGVANGAGVRTTALLTDM---N--QVLASSAGN 252 (440)
T ss_dssp -----HHHHHHHTT--CCS-EEEEEEEESTTSSSSSHHHHHHHHHHHHHHHHHTTCEEEEEEEEC---S--SCSSSCEES
T ss_pred -----HHHHHHHhc--CCC-eEEEEeccCCccccCCHHHHHHHHHHHHHHHHHcCCceEEEecCC---C--CchhhcCCC
Confidence 233333332 655 7777 886 578888877766433320111111 22110 0 222 279
Q ss_pred HHHHHHHHHHHHcCCCC-Cc--hhhhhhhcccccccccccC
Q psy9403 223 INDNVLWIQSVLDNKLP-IP--STIINQVKNCILISQKNIH 260 (737)
Q Consensus 223 ~~~~a~~~~~vl~G~~~-~~--~~~~~~~~~~l~~~~~~~~ 260 (737)
+.+|+++ +++|+|+.+ .+ ..+++|++++|+++|++-+
T Consensus 253 a~E~ae~-~~vL~G~g~~~~~~d~vl~nAa~~L~~ag~a~~ 292 (440)
T 2tpt_A 253 AVEVREA-VQFLTGEYRNPRLFDVTMALCVEMLISGKLAKD 292 (440)
T ss_dssp HHHHHHH-HHHHHTSCCCHHHHHHHHHHHHHHHHHTTSCSS
T ss_pred HHHHHHH-HHHHCCCCCchHHHHHHHHHHHHHHHhcCCCCC
Confidence 9999998 999999833 11 2588999999999998876
No 14
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=100.00 E-value=2.4e-36 Score=331.89 Aligned_cols=215 Identities=14% Similarity=0.093 Sum_probs=181.8
Q ss_pred CcccCCCHHHHHHHHHHHHhcCCCCCCCC--CCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCcH
Q psy9403 1 MRIKGESVEEISGFLNAINSLFIPLEIPI--SKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITT 78 (737)
Q Consensus 1 lr~kgEt~eEl~g~~~a~~~~~~~~~~~~--~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~gs 78 (737)
||+||||+|||+||++||+++..+++.+. ...+|+|||||||.+ |||++|+++|++|+||+|||||+.++++|+
T Consensus 45 lr~kGet~eEiag~a~AM~~~~~~v~~~~~~~~~vD~~gTGGdG~~----iSt~~A~vvAa~Gv~VaKHGnRa~ss~~Gs 120 (433)
T 1brw_A 45 IYFRGMTEEETAALTMAMVQSGEMLDLSSIRGVKVDKHSTGGVGDT----TTLVLGPLVASVGVPVAKMSGRGLGHTGGT 120 (433)
T ss_dssp HHHHCCCHHHHHHHHHHHHHTSCCCCCTTSCSCCEEEEECCCSSCC----HHHHHHHHHHTTTCCEEEEECCCBTTBCCH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCCcccccCCceeeCCCCCCCcc----hHHHHHHHHHhCCCcEEEECCCCCCCCCCH
Confidence 58999999999999999999998876542 247999999999885 899999999999999999999999999999
Q ss_pred HHHHHHc-CCCCcCCHHHHHHHHHhCCeEeEec-ccccHHHHHHHHHHhHcCCCCchhhHHHhhcCCCCC----------
Q psy9403 79 YEILKKL-GYFAVSSKKKAIKYLKLKRLVFMDI-SILIPELSKLLEIYYMLGIRNSSHLLVKIIQPLSIP---------- 146 (737)
Q Consensus 79 ~dvl~~l-Gi~~~~~~~~~~~~l~~~g~~fl~~-~~~~p~l~~l~~~R~~lg~Rt~~~t~~~ll~Pl~~p---------- 146 (737)
+|+||+| |++++++++++.++|++.||+|+++ |.|||+|+++.++|++| || +||+ ||.||
T Consensus 121 aDvLEaL~Gv~i~ls~e~~~~~l~~~Gi~fl~a~~~~hPA~k~l~~lR~~l--rT----vfNi--PLin~s~lskklA~G 192 (433)
T 1brw_A 121 IDKLESVPGFHVEISKDEFIRLVNENGIAIIGQTGDLTPADKKLYALRDVT--AT----VNSI--PLIASSIMSKKIAAG 192 (433)
T ss_dssp HHHHTTSTTCCCCCCHHHHHHHHHHHSEEEEECCTTSCHHHHHHHHHHHHH--TC----CCCH--HHHHHHHHHHHHHHC
T ss_pred HHHHHHCcCceecCCHHHHHHHHHHcCeeEecCchhhCHHHHHHHHHHHhh--CC----ccCh--hhcCcHhhHHHHhcC
Confidence 9999999 9999999999999999999999999 59999999999999999 89 5555 55555
Q ss_pred C-ceEEEe------e------CcccHHHHHHHHhhccCCCeEEEEEeCCCceeecCCCCcEEEEEeeCCeEEEEcCCCCC
Q psy9403 147 A-LRLVSY------T------HPEYLKILSDYFYNEKSLGDIFLMQGTEGEVIPNICNSKQIIHWFHDNKYTKLTKEQNK 213 (737)
Q Consensus 147 ~-~~v~Gv------~------h~~~~~~~~~~~~~~~g~~~~~vv~G~eG~de~s~~~~t~~~~~~~~g~~~~~~p~~~g 213 (737)
+ .+|+|| | |+.+.+.|.++++. +|..+.+++++. + +.+|
T Consensus 193 ~~~~VlgVk~G~gaf~~~~de~~~l~~~~v~~~~~-~G~~~~~~i~~~---~------------------------~plg 244 (433)
T 1brw_A 193 ADAIVLDVKTGAGAFMKKLDEARRLARVMVDIGKR-VGRRTMAVISDM---S------------------------QPLG 244 (433)
T ss_dssp CSEEEEEEEESTTSSCCSHHHHHHHHHHHHHHHHH-TTCEEEEEEEEC---S------------------------SCSS
T ss_pred CCEEEEEeecccccccCCHHHHHHHHHHHHHHHHH-cCCEEEEEEcCC---C------------------------Cccc
Confidence 1 278888 7 78888888888876 787777777742 1 1123
Q ss_pred CcCCCCCCCHHHHHHHHHHHHcCCCCCc--hhhhhhhcccccccccccC
Q psy9403 214 EISFPKNSNINDNVLWIQSVLDNKLPIP--STIINQVKNCILISQKNIH 260 (737)
Q Consensus 214 ~~~~~~~~~~~~~a~~~~~vl~G~~~~~--~~~~~~~~~~l~~~~~~~~ 260 (737)
.. .+++.+|+++ +++|+|+.+.+ ..+++|++++|+++|++-+
T Consensus 245 ~~----~G~a~E~a~~-~~vL~G~g~~~~~d~vl~nAa~~L~~~g~a~~ 288 (433)
T 1brw_A 245 YA----VGNALEVKEA-IETLKGNGPHDLTELCLTLGSHMVYLAEKAPS 288 (433)
T ss_dssp SE----ESSHHHHHHH-HHHHTTCSCHHHHHHHHHHHHHHHHHTTSSSS
T ss_pred cc----CCCHHHHHHH-HHHHCCCCChhHHHHHHHHHHHHHHhcCCCCC
Confidence 21 2789999966 99999973321 2588999999999998876
No 15
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=100.00 E-value=3.5e-36 Score=332.64 Aligned_cols=215 Identities=16% Similarity=0.071 Sum_probs=183.6
Q ss_pred CcccCCCHHHHHHHHHHHHhcCCCCCCCC---CCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCCCc
Q psy9403 1 MRIKGESVEEISGFLNAINSLFIPLEIPI---SKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRIT 77 (737)
Q Consensus 1 lr~kgEt~eEl~g~~~a~~~~~~~~~~~~---~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~~g 77 (737)
||+||||+|||+||++|||++..+++.+. ...+|+|||||||.+ |||++|+|+|++|+||+|||||+.+|++|
T Consensus 72 lr~kGeT~eEiag~a~AMr~~~~~v~~~~~~~~~~vD~~gTGGdG~~----iSt~~A~vvAa~Gv~VaKHGnRa~ss~~G 147 (474)
T 1uou_A 72 IRLRGMDLEETSVLTQALAQSGQQLEWPEAWRQQLVDKHSTGGVGDK----VSLVLAPALAACGCKVPMISGRGLGHTGG 147 (474)
T ss_dssp HHHHCCCHHHHHHHHHHHHTTSCCCCCCGGGGGGBEEEEESCCTTCC----HHHHHHHHHHTTTCBEEEECCCCBTTBCC
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCCcccccCCCeeEeCCCCCCCce----eHHHHHHHHHhCCCCEEEECCCCCCCCCC
Confidence 58999999999999999999998876542 147999999999887 99999999999999999999999999999
Q ss_pred HHHHHHHc-CCCCcCCHHHHHHHHHhCCeEeEec-ccccHHHHHHHHHHhHcCCCCchhhHHHhhcCCCCC--------C
Q psy9403 78 TYEILKKL-GYFAVSSKKKAIKYLKLKRLVFMDI-SILIPELSKLLEIYYMLGIRNSSHLLVKIIQPLSIP--------A 147 (737)
Q Consensus 78 s~dvl~~l-Gi~~~~~~~~~~~~l~~~g~~fl~~-~~~~p~l~~l~~~R~~lg~Rt~~~t~~~ll~Pl~~p--------~ 147 (737)
++|+||+| |++++++++++.++|++.||+|+++ |.|||+|+++.++|+++ || +||+ ||.|| .
T Consensus 148 SaDvLEaLpGv~i~ls~e~~~~~l~~~Gi~fl~a~~~~hPA~k~l~~lR~~l--rT----vfNi--PLinpsi~skklA~ 219 (474)
T 1uou_A 148 TLDKLESIPGFNVIQSPEQMQVLLDQAGCCIVGQSEQLVPADGILYAARDVT--AT----VDSL--PLITASILSKKLVE 219 (474)
T ss_dssp HHHHHTTSTTCCCCCCHHHHHHHHHHHSEEEECCCSSSSHHHHHHHHHHHHT--TC----SSCH--HHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCCCCHHHHHHHHHHcCeEEecCchhhCHHHHHHHHHHhhh--CC----ccch--hhcCcHHHHHHHhh
Confidence 99999999 9999999999999999999999999 69999999999999994 89 5555 55555 1
Q ss_pred ---ceEEEe------e------CcccHHHHHHHHhhccCCCeEEEEEeCCCceeecCCCCcEEEEEeeCCeEEEEcCCCC
Q psy9403 148 ---LRLVSY------T------HPEYLKILSDYFYNEKSLGDIFLMQGTEGEVIPNICNSKQIIHWFHDNKYTKLTKEQN 212 (737)
Q Consensus 148 ---~~v~Gv------~------h~~~~~~~~~~~~~~~g~~~~~vv~G~eG~de~s~~~~t~~~~~~~~g~~~~~~p~~~ 212 (737)
.+|+|| | |+.+.+.|.++++. +|..+.+++++. ++ | +
T Consensus 220 g~~~~VlgVk~G~gafm~~lde~~~la~~~v~~~~~-~G~~~~~vitd~---~~----------------------p--l 271 (474)
T 1uou_A 220 GLSALVVDVKFGGAAVFPNQEQARELAKTLVGVGAS-LGLRVAAALTAM---DK----------------------P--L 271 (474)
T ss_dssp TCSEEEEEEEEC--CCCCSHHHHHHHHHHHHHHHHH-TTCCEEEEEEEC---SS----------------------C--S
T ss_pred cCCeEEEEeccccccccCCHHHHHHHHHHHHHHHHH-CCCEEEEEEecC---CC----------------------c--c
Confidence 278888 7 78888888888887 888888888863 21 1 2
Q ss_pred CCcCCCCCCCHHHHHHHHHHHHcCCCCCc--hhhhhhhcccccccccccC
Q psy9403 213 KEISFPKNSNINDNVLWIQSVLDNKLPIP--STIINQVKNCILISQKNIH 260 (737)
Q Consensus 213 g~~~~~~~~~~~~~a~~~~~vl~G~~~~~--~~~~~~~~~~l~~~~~~~~ 260 (737)
|.. -+++.+|++++ ++|+|+.+.+ ..+++|++++|+++|++-+
T Consensus 272 g~~----~G~a~E~ae~~-~vL~G~g~~~~~d~vl~nAa~~L~~aG~a~~ 316 (474)
T 1uou_A 272 GRC----VGHALEVEEAL-LCMDGAGPPDLRDLVTTLGGALLWLSGHAGT 316 (474)
T ss_dssp TTE----ESSHHHHHHHH-HHHTTCSCHHHHHHHHHHHHHHHHHHTSCSS
T ss_pred ccc----CCCHHHHHHHH-HHHCCCCchhHHHHHHHHHHHHHHhcCCCCC
Confidence 211 27899999765 9999984433 2688999999999998776
No 16
>4ex8_A ALNA; alpha/beta/alpha-domain, C-glycosynthase, divalent metal ION ligase; 2.10A {Streptomyces SP} PDB: 4ex9_A*
Probab=22.61 E-value=43 Score=34.48 Aligned_cols=130 Identities=13% Similarity=0.112 Sum_probs=83.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCCCCCCCCchhHHHHHHHHcCCCcEEEeCCCCCCCC------CcH
Q psy9403 5 GESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGR------ITT 78 (737)
Q Consensus 5 gEt~eEl~g~~~a~~~~~~~~~~~~~~~~di~g~~~dg~~~~~n~s~~~a~vla~~G~~V~~HG~~~~~~~------~gs 78 (737)
|-|.+||.-++++ +...++. ..+.--++..+.+|..| + .+..+++..+|++|+--|+-+--.| -=|
T Consensus 79 GL~~~eLe~la~~--~~~~K~S--rRDl~~~~a~g~~GaTT---V-aaTm~lA~~AGI~VFaTGGiGGVHRgae~t~DIS 150 (316)
T 4ex8_A 79 GLTDSLIERFAST--KGIPKIS--ARDIGGALAGGGLGATT---V-AGTIVIAERAGIQVFTTAGIGGVHRRGEDTLDIS 150 (316)
T ss_dssp SCCHHHHHHHHHC--TTCCEEC--GGGHHHHHHHCSCBEEC---H-HHHHHHHHHHTCCEEECSCBCCBBTTHHHHCCBC
T ss_pred cCCHHHHHHHhcC--CCccccc--hhhHHHHHhCCCCcccc---H-HHHHHHHHHCCCcEEEeCCccccCCCCCCCcchh
Confidence 6788999888762 2222322 11222245678888877 2 2336777888999999887541111 115
Q ss_pred HHHHHH---------cCCCCcCCHHHHHHHHHhCCeEeE-ecccccH------------------HHHHHHHHHhHcCCC
Q psy9403 79 YEILKK---------LGYFAVSSKKKAIKYLKLKRLVFM-DISILIP------------------ELSKLLEIYYMLGIR 130 (737)
Q Consensus 79 ~dvl~~---------lGi~~~~~~~~~~~~l~~~g~~fl-~~~~~~p------------------~l~~l~~~R~~lg~R 130 (737)
+|+-|- -|+.--++.....+.||.+|+..+ |....+| ...+++..+++||++
T Consensus 151 aDL~eLarTpV~VVcaG~KsILDi~~TLE~LET~GV~Vvgy~td~fPaFy~r~Sg~~~pr~d~~~e~A~~~~a~~~lgl~ 230 (316)
T 4ex8_A 151 PDLLQFRKTKMTVVSGGAKSILDHRLTAEYLETAGVPVYGYRTDKLAAFVVREADVPVTRMDDLHTAARAAEAHWQVNGP 230 (316)
T ss_dssp THHHHTTTCCEEEEESBBCTTBCHHHHHHHHHHTTCCEEEETCSBCCBTTBSCCSCBCEEESSHHHHHHHHHHHHHHHCS
T ss_pred hhHHHhcCCCeEEEecccchhhcchHHHHHHHhCCceEEEecCCCCceeeeCCCCCcCCCCCCHHHHHHHHHHHHHhCCC
Confidence 665552 255566788899999999988665 3334444 456788899999999
Q ss_pred CchhhHHHhhcCCCCC
Q psy9403 131 NSSHLLVKIIQPLSIP 146 (737)
Q Consensus 131 t~~~t~~~ll~Pl~~p 146 (737)
+ =.-+.||.-..
T Consensus 231 ~----g~lvanPiP~e 242 (316)
T 4ex8_A 231 G----TVLLTSPIDEQ 242 (316)
T ss_dssp C----EEEEECCCCGG
T ss_pred C----eEEEEcCCChh
Confidence 8 56677776543
Done!