RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9403
(737 letters)
>gnl|CDD|182685 PRK10735, tldD, protease TldD; Provisional.
Length = 481
Score = 637 bits (1645), Expect = 0.0
Identities = 262/482 (54%), Positives = 359/482 (74%), Gaps = 9/482 (1%)
Query: 261 PLNIARSILLEPFDLDEKILLKILGNMFKNKVDYADFYFQFTKNENWILEEGIVKTGNFS 320
LN+ LL L+ + L ILG + + ++DY D YFQ + +E+W+LE+ I+K G+++
Sbjct: 2 SLNLVSEQLLAANGLNHQDLFAILGQLAERRLDYGDLYFQSSYHESWVLEDRIIKDGSYN 61
Query: 321 INQGVGVRAISGDKTAFFYSDDISKNTLINAVKSTRSIAN-QSNGKIKIIKNIKKIKINS 379
I+QGVGVRAISG+KT F Y+D IS L + ++ R+I +GK++ + ++ +
Sbjct: 62 IDQGVGVRAISGEKTGFAYADQISLLALEQSAQAARTIVRDSGDGKVQ---TLGAVEHSP 118
Query: 380 LYSFTDTISSINIREKIKLLERVEKIARLKDPRVIKVIANLSGEYDVILITRNDGLIVAD 439
LY+ D + S++ EK+ +L RV+K+AR D RV +V A+L+G Y++IL+ DG + AD
Sbjct: 119 LYTSLDPLQSMSREEKLDILRRVDKVARAADKRVQEVTASLTGVYELILVAATDGTLAAD 178
Query: 440 IRPLVQLFVTIIVEKNGRREIGNSGCGGRYNYNYFT-----DMILEKCVSNSVNSALINL 494
+RPLV+L V+++VE++G+RE G SG GGR+ Y YF ++ + +V AL+NL
Sbjct: 179 VRPLVRLSVSVLVEEDGKRERGASGGGGRFGYEYFLADLDGEVRADAWAKEAVRMALVNL 238
Query: 495 EAKPAPAGIMKVVLGPGWPGILLHEAIGHGLEGDFNRKGSSAFSNCIGKRIASKEITIVD 554
A APAG M VVLG GWPG+LLHEA+GHGLEGDFNR+G+S FS +G+ +AS+ T+VD
Sbjct: 239 SAVAAPAGTMPVVLGAGWPGVLLHEAVGHGLEGDFNRRGTSVFSGQVGELVASELCTVVD 298
Query: 555 NGTLANRRGSINIDDEGNPTQCTTLIENGILKGYMQDIMNARLMNMSITGNARRESFAHI 614
+GT+ +RRGS+ IDDEG P Q LIENGILKGYMQD +NARLM ++ TGN RRES+AH+
Sbjct: 299 DGTMVDRRGSVAIDDEGTPGQYNVLIENGILKGYMQDKLNARLMGVAPTGNGRRESYAHL 358
Query: 615 PIPRMTNTYMLNGKFHPEEIISSVKNGLYATNFSGGQVDITNGKFVFSASKAYIIKNGKI 674
P+PRMTNTYML GK P+EII SV+ G+YA NF GGQVDIT+GKFVFS S+AY+I+NGK+
Sbjct: 359 PMPRMTNTYMLAGKSTPQEIIESVEYGIYAPNFGGGQVDITSGKFVFSTSEAYLIENGKV 418
Query: 675 TYPVKGATLIGHGPNILKKVSMIGNDMKLDPGVGVCGKDGQMVPVGVGQPTLKIDSITVG 734
T PVKGATLIG G ++++SM+GND+KLD GVGVCGK+GQ +PVGVGQPTLK+D++TVG
Sbjct: 419 TKPVKGATLIGSGIEAMQQISMVGNDLKLDNGVGVCGKEGQSLPVGVGQPTLKVDNLTVG 478
Query: 735 GT 736
GT
Sbjct: 479 GT 480
>gnl|CDD|223389 COG0312, TldD, Predicted Zn-dependent proteases and their
inactivated homologs [General function prediction only].
Length = 454
Score = 454 bits (1171), Expect = e-154
Identities = 185/464 (39%), Positives = 267/464 (57%), Gaps = 13/464 (2%)
Query: 276 DEKILLKILGNMFKNKVDYADFYFQFTKNENWILEEGIVKTGNFSINQGVGVRAISGDKT 335
++L K+L K D A+ + + E+ L G V+T +FSI++GVGVR I G
Sbjct: 1 MMELLEKLLELALKAGADEAEVRVERSSGESVSLRNGEVETVSFSIDRGVGVRVIKGGGW 60
Query: 336 AFFYSDDISKNTLINAVKSTRSIANQSNGKIKIIKNIKKIKINSLYSFTD--TISSINIR 393
F ++D+S+ L AV++ IA + + + + Y D +++
Sbjct: 61 GFASTNDLSEA-LEAAVEAALKIARLAGEDEEAGLAPPEPLAPASYPDLDLKDPEDVSLE 119
Query: 394 EKIKLLERVEKIARLKDPRVIKVIANLSGEYDVILITRNDGLIVADIRPLVQLFVTIIVE 453
EK++LL+R E AR DPR+ V A+ S ++I ++G V R V L V++I
Sbjct: 120 EKVELLKRAEAAARAADPRINSVSASYSDSVSEVVIANSEGSEVEYERTRVSLSVSVIAG 179
Query: 454 KNGRREIGNSGCGGRYNYNYFTDMILEKCVSNSVNSALINLEAKPAPAGIMKVVLGPGWP 513
+ GR E + GG + + E+ + AL LEA+P P+G V+L P
Sbjct: 180 EGGRGEERSGRGGGSRGFEELLEEP-EEVAEEAARRALSLLEARPVPSGRYPVILSPEAA 238
Query: 514 GILLHEAIGHGLEGDFNRKGSSA-FSNCIGKRIASKEITIVDNGTLANRRGSINIDDEGN 572
G+LLHEA+GH LEGD KG S+ ++ +GKR+AS+ +TI+D+ TL GS DDEG
Sbjct: 239 GVLLHEALGHALEGDRVYKGESSLLADKLGKRVASELLTIIDDPTLPGGLGSYPFDDEGV 298
Query: 573 PTQCTTLIENGILKGYMQDIMNARLMNMSITGNARRESFAHIPIPRMTNTYMLNGKFHPE 632
PT+ T LIENG+LKGY+ D +AR + + TGNARR S+AH+PIPRMTNTY+ G + E
Sbjct: 299 PTRRTVLIENGVLKGYLHDRYSARKLGLESTGNARRGSYAHVPIPRMTNTYIEPGDYSFE 358
Query: 633 EIISSVKNGLYATNFSGGQVDITNGKFVFSASKAYIIKNGKITYPVKGATLIGHGPNILK 692
E+I VK GLY TN GGQ DIT G F FS ++ Y+I+NG+ITYPVKG TL G+ +LK
Sbjct: 359 ELIEDVKRGLYVTNLWGGQNDITGGFFRFSGAEGYLIENGEITYPVKGITLSGNLLELLK 418
Query: 693 KVSMIGNDMKLDPGVGVCGKDGQMVPVGVGQPTLKIDSITVGGT 736
+ +G D++LD G G CGK VG P++++ + V G
Sbjct: 419 NIVAVGKDLELDEGRGFCGK--------VGGPSIRVRGVIVAGG 454
>gnl|CDD|236160 PRK08136, PRK08136, glycosyl transferase family protein;
Provisional.
Length = 317
Score = 261 bits (669), Expect = 3e-81
Identities = 98/261 (37%), Positives = 150/261 (57%), Gaps = 8/261 (3%)
Query: 1 MRIKGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKK 60
+RIKGES E+ GFL+A+ + IPL P + P++IPSYNG+R+ N+ PLLALLL+++
Sbjct: 49 LRIKGESEAEMLGFLDAMQAHTIPLTPPAGRPMPVVIPSYNGARKQANLTPLLALLLARE 108
Query: 61 GIPVFIHGIKKNFGRITTYEILKKLGYFAVSSKKKAIKYLKLKRLVFMDISILIPELSKL 120
G+PV +HG+ ++ R+T+ EI + LG +A L + F+ + +L P L++L
Sbjct: 109 GVPVLVHGVSEDPTRVTSAEIFEALGIPPTLHADQAQAKLAEGQPAFIPVGVLCPPLARL 168
Query: 121 LEIYYMLGIRNSSHLLVKIIQPLSI-PALRLVSYTHPEYLKILSDYFYNEKSLGDIFLMQ 179
L + + +G+RNS+H L K+ P + ALRL SYTHPEY L+++F + LM+
Sbjct: 169 LALRWRMGVRNSAHTLAKLATPFAEGAALRLSSYTHPEYRDRLAEFFSDIG--ARALLMR 226
Query: 180 GTEGEVIPNICNSKQIIHWFHDNKYTKLTKEQNKEISF----PKNSNINDNVLWIQSVLD 235
GTEGEV N Q I W HD L + Q+ P + WI+ VL
Sbjct: 227 GTEGEVYANPRRCPQ-IDWIHDGGCRVLVERQSGSADEPPELPAAKDAATTAAWIERVLA 285
Query: 236 NKLPIPSTIINQVKNCILISQ 256
++P+P +I QV C++ +
Sbjct: 286 GEVPVPESIARQVACCLVAAG 306
>gnl|CDD|216551 pfam01523, PmbA_TldD, Putative modulator of DNA gyrase. tldD and
pmbA were found to suppress mutations in letD and
inhibitor of DNA gyrase. Therefore it has been
hypothesised that the TldD and PmbA proteins modulate
the activity of DNA gyrase. It has also been suggested
that PmbA may be involved in secretion.
Length = 289
Score = 229 bits (587), Expect = 1e-69
Identities = 96/296 (32%), Positives = 147/296 (49%), Gaps = 7/296 (2%)
Query: 293 DYADFYFQFTKNENWILEEGIVKTGNFSINQGVGVRAISGDKTAFFYSDDISKNTLINAV 352
D A+ + +++ + G V+ + S ++GVGVR I + F + D+S+ L AV
Sbjct: 1 DEAEVRVEESESTSVRFRNGKVENVSSSEDRGVGVRVIKDGRVGFASTSDLSEEALKKAV 60
Query: 353 KSTRSIANQSNGKIKIIKNIKKIKINSLYSFTDTISSINIREKIKLLERVEKIARLKDPR 412
+ ++A S + + + + + +++ EKI+LL+ +E+ A DPR
Sbjct: 61 ERALALAKLSPEDPAGLPDPSPLPPVP-DLYDPDPADLSLEEKIELLKELEEAALAVDPR 119
Query: 413 VIKVIANLSGEYDVILITRNDGLIVADIRPLVQLFVTIIVEKNGRREIGNSGCGGRYNYN 472
+ + S ++I ++GL V V L V+ + E G + G S G R+
Sbjct: 120 IS-ASGSYSDSVSEVIIANSEGLEVEYESTRVSLSVSAVAEDGGEVQSGYSYTGRRFE-- 176
Query: 473 YFTDMILEKCVSNSVNSALINLEAKPAPAGIMKVVLGPGWPGILLHEAIGHGLEGDFNRK 532
+ E+ + AL L AKP G VVL P G LLHEA GH LE D K
Sbjct: 177 ---LIDPEELAEEAAEKALALLGAKPIETGKYPVVLDPEAAGSLLHEAFGHALEADNVLK 233
Query: 533 GSSAFSNCIGKRIASKEITIVDNGTLANRRGSINIDDEGNPTQCTTLIENGILKGY 588
G S +G+++AS+ +TIVD+ TL GS DDEG PT+ T LIENG+LKGY
Sbjct: 234 GRSFLKGKLGEKVASELVTIVDDPTLPGGLGSYPFDDEGVPTRRTVLIENGVLKGY 289
>gnl|CDD|223621 COG0547, TrpD, Anthranilate phosphoribosyltransferase [Amino acid
transport and metabolism].
Length = 338
Score = 120 bits (303), Expect = 1e-29
Identities = 56/256 (21%), Positives = 112/256 (43%), Gaps = 21/256 (8%)
Query: 1 MRIKGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKK 60
+RIKGE+ EEI+GF A+ L +P + I+ +G+ N+ A++ +
Sbjct: 46 LRIKGETPEEIAGFAEAMREHAPKLPVPAADPVDIVGTGGDGANTI-NISTAAAIVAAAA 104
Query: 61 GIPVFIHGIKKNFGRITTYEILKKLGYFAVSSKKKAIKYLKLKRLVFMDISILIPELSKL 120
G+PV HG + + + ++L+ LG S ++A + L+ + F+ P + +
Sbjct: 105 GVPVAKHGNRSVSSKSGSADVLEALGVNLELSPEQAARALEETGIGFLFAPAYHPAMKHV 164
Query: 121 LEIYYMLGIRNSSHLLVKIIQPLSIPALRLVSYTHPEYLKILSDYFYNEKSLG--DIFLM 178
+ LG+R +LL ++ P L+L+ HPE +++L++ LG ++
Sbjct: 165 APVRKELGVRTIFNLLGPLLNPAR-AKLQLIGVYHPELVELLAEALRL---LGVERALVV 220
Query: 179 QGTEG--EVIPNICNSKQIIHWFHDNKYTKLTKEQNKEISFPKNSNIN-------DNVLW 229
G EG EV P ++ D + + T ++ + + +N
Sbjct: 221 HGLEGLDEVTPTGTT---LVAELKDGEIREYTLTP-EDFGLERAPLEDLPGGDPEENAEI 276
Query: 230 IQSVLDNKL-PIPSTI 244
+++VL + P +
Sbjct: 277 LRAVLAGEEGPARDAV 292
>gnl|CDD|181637 PRK09071, PRK09071, hypothetical protein; Validated.
Length = 323
Score = 86.1 bits (214), Expect = 3e-18
Identities = 52/196 (26%), Positives = 98/196 (50%), Gaps = 21/196 (10%)
Query: 1 MRIKGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRR----FMNVIPLLALL 56
+R+K E+ EE++GF+ AI + + + PSY G RR ++ L A L
Sbjct: 50 LRVKEETAEELAGFVEAIRERLQAPPLAVD----LDWPSYAGKRRHLPWYL----LAAKL 101
Query: 57 LSKKGIPVFIHGIKKNF-GRITTYEILKKLGYFAVSSKKKAIKYLKLKRLVFMDISILIP 115
L++ G V +HG + GR+ T ++L+ LG S ++A + L+ + ++ + P
Sbjct: 102 LAQNGYRVLLHGGGGHTAGRLYTEQLLEALGIPIARSWQEAEQALEEHNIAYLPLEDFAP 161
Query: 116 ELSKLLEIYYMLGIRNSSHLLVKIIQPLSIPALRLVSYTHPEYLKILSDYFYNEKSLGDI 175
+L +++++ LG+R+ + L +++ PL+ A L HP Y ++ + + LGD
Sbjct: 162 QLQRMIDLRNTLGLRSPINTLARLLNPLNAKA-SLQGIFHPGYQQLHRE---AARLLGDQ 217
Query: 176 FLM----QGTEGEVIP 187
+ +G E E P
Sbjct: 218 NALVFKGEGGESERNP 233
>gnl|CDD|168934 PRK07394, PRK07394, hypothetical protein; Provisional.
Length = 342
Score = 50.7 bits (122), Expect = 1e-06
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 11/92 (11%)
Query: 2 RIKGESVEEISGFLNAINSLFIPLEIPISKYAPII--IPSYNGSRRFMNVIPLLALLLSK 59
RIK + EE++G L+ + L L+ P ++ PI+ +P Y+G R + PL AL+L+
Sbjct: 52 RIKRPTPEELAGMLDTYDELGPKLQSPSNQRPPIVFGMP-YDGRSRTAPIYPLTALILAA 110
Query: 60 KGIPVFIHG-----IKKNFGRITTYEILKKLG 86
G PV +HG K +G + E+ + LG
Sbjct: 111 AGQPVVLHGGDRMPTK--YG-VPLVELWQGLG 139
>gnl|CDD|182922 PRK11040, PRK11040, peptidase PmbA; Provisional.
Length = 446
Score = 48.2 bits (115), Expect = 1e-05
Identities = 43/176 (24%), Positives = 84/176 (47%), Gaps = 12/176 (6%)
Query: 527 GDFNRKGSSAFSNCIGKRIASKEITIVDNGTLANRRGSINIDDEGNPTQCTTLIENGILK 586
G RK S+ + +GK+I + +TI ++ L S D EG T+ +I++G+L+
Sbjct: 263 GSVYRK-STFLLDSLGKQILPEWLTIEEHPHLLKGLASTPFDSEGVRTERRDIIKDGVLQ 321
Query: 587 GYMQDIMNARLMNMSITGNARRESFAHIPIPRMTNTYMLNGKFHPEEIISSVKNGLYATN 646
++ +AR + + TG+A + N + E+++ + GL T
Sbjct: 322 TWLLTSYSARKLGLKSTGHA----------GGIHNWRIAGQGLSFEQMLKEMGTGLVVTE 371
Query: 647 FSGGQVDITNGKFVFSASKAYIIKNGKITYPVKGATLIGHGPNILKKVSMIGNDMK 702
G V G + A+ + ++NG+I YPV T+ G+ ++ + + +GND++
Sbjct: 372 LMGQGVSAVTGDYSRGAA-GFWVENGEIQYPVSEITIAGNLKDMWRNIVTVGNDIE 426
>gnl|CDD|237764 PRK14607, PRK14607, bifunctional glutamine
amidotransferase/anthranilate phosphoribosyltransferase;
Provisional.
Length = 534
Score = 44.3 bits (105), Expect = 2e-04
Identities = 36/168 (21%), Positives = 72/168 (42%), Gaps = 7/168 (4%)
Query: 1 MRIKGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKK 60
+R+KGE+ +E++GF + + + P + +G F N+ A +++
Sbjct: 237 LRMKGETADELAGFASVMREKSRHIPAPSPRTVDTCGTGGDGFGTF-NISTTSAFVVAAA 295
Query: 61 GIPVFIHGIKKNFGRITTYEILKKLGYFAVSSKKKAIKYLKLKRLVFMDISILIPELSKL 120
G+PV HG + + + ++L+ LG + ++A L+ F+ + P +
Sbjct: 296 GVPVAKHGNRAVSSKSGSADVLEALGVKLEMTPEEAASVLRETGFSFLFAPLFHPAMKHA 355
Query: 121 LEIYYMLGIRNSSHLLVKIIQPLSIPALRL----VSYTHP--EYLKIL 162
LGIR + +LL + P + + SY P + L+ L
Sbjct: 356 APARRELGIRTAFNLLGPLTNPARVKYQIVGVFDPSYAEPLAQALQRL 403
>gnl|CDD|233329 TIGR01245, trpD, anthranilate phosphoribosyltransferase. In many
widely different species, including E. coli, Thermotoga
maritima, and Archaeoglobus fulgidus, this enzymatic
domain (anthranilate phosphoribosyltransferase) is found
C-terminal to glutamine amidotransferase; the fusion
protein is designated anthranilate synthase component II
(EC 4.1.3.27) [Amino acid biosynthesis, Aromatic amino
acid family].
Length = 330
Score = 33.8 bits (78), Expect = 0.30
Identities = 36/165 (21%), Positives = 79/165 (47%), Gaps = 5/165 (3%)
Query: 1 MRIKGESVEEISGFLNAI--NSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLS 58
+RIKGE+ EEI+GF A+ +++ +P P+ I+ +G+ N+ A + +
Sbjct: 39 LRIKGETPEEITGFAKAMREHAVKVPGR-PVEDLVDIVGTGGDGANTI-NISTASAFVAA 96
Query: 59 KKGIPVFIHGIKKNFGRITTYEILKKLGYFAVSSKKKAIKYLKLKRLVFMDISILIPELS 118
G+ V HG + + + ++L+ LG +K + L+ + F+ + P +
Sbjct: 97 AAGVKVAKHGNRSVSSKSGSADVLEALGVNLDLGPEKVARSLEETGIGFLFAPLYHPAMK 156
Query: 119 KLLEIYYMLGIRNSSHLLVKIIQPLSIPALRLVSYTHPEYLKILS 163
+ + LG+R +LL + P P +++ P+ +++++
Sbjct: 157 HVAPVRRELGVRTVFNLLGPLTNPAR-PKYQVIGVYDPDLVEVMA 200
>gnl|CDD|145834 pfam02885, Glycos_trans_3N, Glycosyl transferase family, helical
bundle domain. This family includes anthranilate
phosphoribosyltransferase (TrpD), thymidine
phosphorylase. All these proteins can transfer a
phosphorylated ribose substrate.
Length = 66
Score = 30.6 bits (70), Expect = 0.37
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 1 MRIKGESVEEISGFLNAI 18
+RIKGE+ EEI+G A+
Sbjct: 44 LRIKGETPEEIAGAAKAM 61
>gnl|CDD|234682 PRK00188, trpD, anthranilate phosphoribosyltransferase;
Provisional.
Length = 339
Score = 33.1 bits (77), Expect = 0.43
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 1 MRIKGESVEEISGFLNAINSLFIPLEIP 28
+R+KGE+V+EI+G A+ +P+ P
Sbjct: 45 LRVKGETVDEIAGAARAMREHAVPVPDP 72
>gnl|CDD|227588 COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General
function prediction only].
Length = 313
Score = 32.9 bits (75), Expect = 0.53
Identities = 10/51 (19%), Positives = 12/51 (23%)
Query: 332 GDKTAFFYSDDISKNTLINAVKSTRSIANQSNGKIKIIKNIKKIKINSLYS 382
DK F + K + A K S A Q Y
Sbjct: 43 SDKKDFDFDKVAGKMKIGGAYKPKPSTAIQIGTSPNTTSGEVSQYGAWYYF 93
>gnl|CDD|219671 pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.
Length = 249
Score = 32.0 bits (73), Expect = 0.92
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 325 VGVRAISGDKTAFFYSDDISKNTLINA-VKSTRSIANQSNGKIKIIKNIKKIKINSLYSF 383
+ ++ S D D + KN V T G +++ K+ K+ N +++
Sbjct: 52 ISIQNTSNDNVNIL--DYLPKNKNEEYEVSQTLGY--SIGGSVEVNKSGPKLGGNGSFNY 107
Query: 384 TDTIS 388
+ TIS
Sbjct: 108 SKTIS 112
>gnl|CDD|117021 pfam08444, Gly_acyl_tr_C, Aralkyl acyl-CoA:amino acid
N-acyltransferase, C-terminal region. This family
features the C-terminal region of several mammalian
specific aralkyl acyl-CoA:amino acid N-acyltransferase
(glycine N-acyltransferase) proteins EC:2.3.1.13.
Length = 89
Score = 29.7 bits (67), Expect = 1.1
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 37 IPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYEILKKLGYFAVSS 92
+P Y +VI A L K G PV+ H K N + ++ LG+ +
Sbjct: 28 LPKYRRQGLMSHVIYHQAQYLEKLGFPVYSHVDKANE---ISQKMSGNLGHVPMPC 80
>gnl|CDD|224934 COG2023, RPR2, RNase P subunit RPR2 [Translation, ribosomal
structure and biogenesis].
Length = 105
Score = 29.6 bits (67), Expect = 1.9
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 367 KIIKNIKKIKINSLYSFTDTISSINI---REKIKLLERVEKIARLKDPRVIK 415
K +K I +I+ LYS + R +KL R+ R++ PR IK
Sbjct: 4 KRMKKIAAERIDYLYSLAEETFRTGPDLARRYVKLARRISMKYRVRLPREIK 55
>gnl|CDD|163667 cd07424, MPP_PrpA_PrpB, PrpA and PrpB, metallophosphatase domain.
PrpA and PrpB are bacterial type I serine/threonine and
tyrosine phosphatases thought to modulate the expression
of proteins that protect the cell upon accumulation of
misfolded proteins in the periplasm. The PPP
(phosphoprotein phosphatase) family, to which PrpA and
PrpB belong, is one of two known protein phosphatase
families specific for serine and threonine. This family
also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5,
PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP
catalytic domain is defined by three conserved motifs
(-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family
is ancient with members found in all eukaryotes, and in
most bacterial and archeal genomes. Dephosphorylation
of phosphoserines and phosphothreonines on target
proteins plays a central role in the regulation of many
cellular processes. PPPs belong to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 207
Score = 30.3 bits (69), Expect = 2.3
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 675 TYPVKGATLIGHGPNILKKVSMIGNDMKLDPGVGVCGK 712
T P+KG + HG +K+ +GN + +D G G
Sbjct: 163 TQPIKGVDAVVHGHTPVKRPLRLGNVLYIDTGAVFDGN 200
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 31.2 bits (70), Expect = 2.6
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 16/55 (29%)
Query: 261 PLNIARSILLEPFDLDEKILLKILGNMFK-----------NKVDYADFYFQFTKN 304
PLNI+R L + KIL I N+ K NK DY FY QF KN
Sbjct: 367 PLNISRENLQQ-----NKILKVIRKNIVKKCLEMFDEVAENKEDYKQFYEQFGKN 416
>gnl|CDD|219638 pfam07914, DUF1679, Protein of unknown function (DUF1679). The
region featured in this family is found in a number of
C. elegans proteins, in one case as a repeat. In many of
the family members, this region is associated with the
CHK region described by SMART as being found in ZnF_C4
and HLH domain-containing kinases. In fact, one member
of this family is annotated as being a member of the
nuclear hormone receptor family, and contains regions
typical of such proteins (Interpro:IPR000536,
Interpro:IPR008946, and Interpro:IPR001628).
Length = 413
Score = 30.3 bits (69), Expect = 3.6
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 18/83 (21%)
Query: 156 PEYLKILSDYFYNEKSLGDIFLMQGTEGEVIPNICNSKQIIHWFHDNKYTKLTK--EQ-- 211
++L+ + + F +E+ L IF + I + K +L E
Sbjct: 202 ADFLEQMFETFMSEEGLKGIFD-------------QLRNIFGAEYPEKVEELVDIFEHYG 248
Query: 212 NKEISFPKNSNINDNVLWIQSVL 234
+ + F K +N++ VL I+ VL
Sbjct: 249 PEILIFKKYTNLSK-VLGIKPVL 270
>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 7.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 7 (CDK7) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK7 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK7
plays essential roles in the cell cycle and in
transcription. It associates with cyclin H and MAT1 and
acts as a CDK-Activating Kinase (CAK) by phosphorylating
and activating cell cycle CDKs (CDK1/2/4/6). In the
brain, it activates CDK5. CDK7 is also a component of
the general transcription factor TFIIH, which
phosphorylates the C-terminal domain (CTD) of RNA
polymerase II when it is bound with unphosphorylated
DNA, as present in the pre-initiation complex. Following
phosphorylation, the CTD dissociates from the DNA which
allows transcription initiation.
Length = 298
Score = 29.9 bits (68), Expect = 5.0
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 372 IKKIKINSLYSFTDTISSINIREKIKLLERVEKIARLKDPRVIKVIA 418
IKKIK+ D I+ +RE IKLL+ LK P +I ++
Sbjct: 30 IKKIKLGERKEAKDGINFTALRE-IKLLQ------ELKHPNIIGLLD 69
>gnl|CDD|178032 PLN02410, PLN02410, UDP-glucoronosyl/UDP-glucosyl transferase
family protein.
Length = 451
Score = 30.0 bits (67), Expect = 5.0
Identities = 18/78 (23%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 94 KKAIKYL---KLKRLVFMDI-SILIPELSKLLEIYYMLGIRNSSHLLVKIIQPLSIPALR 149
K I++L K ++F+ + S+ + E+++++E G+ +S+ + +I+P S+
Sbjct: 252 KSCIEWLNKQKKNSVIFVSLGSLALMEINEVMET--ASGLDSSNQQFLWVIRPGSVRGSE 309
Query: 150 LVSYTHPEYLKILSDYFY 167
+ E+ KI+S Y
Sbjct: 310 WIESLPKEFSKIISGRGY 327
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 29.7 bits (67), Expect = 5.6
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 261 PLNIARSILLEPFDLD--EKILLKILGNMFK----NKVDYADFYFQFTKN 304
PLNI+R +L + L K L+K MF +K Y FY +F+KN
Sbjct: 192 PLNISREMLQQNKILKVIRKNLVKKCLEMFNEIAEDKEQYKKFYEEFSKN 241
>gnl|CDD|234631 PRK00098, PRK00098, GTPase RsgA; Reviewed.
Length = 298
Score = 29.4 bits (67), Expect = 5.9
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 15/72 (20%)
Query: 395 KIKLLERVEKIARLKDPRVIKVIANLSGEYDVILITRNDGLIVADIRPLVQLFVTIIVEK 454
KI LL+ +E+ L + YDV+ ++ +G + +++PL+ VT++
Sbjct: 120 KIDLLDDLEEARELLAL-----YRAIG--YDVLELSAKEGEGLDELKPLLAGKVTVL--- 169
Query: 455 NGRREIGNSGCG 466
G SG G
Sbjct: 170 -----AGQSGVG 176
>gnl|CDD|217990 pfam04257, Exonuc_V_gamma, Exodeoxyribonuclease V, gamma subunit.
The Exodeoxyribonuclease V enzyme is a multi-subunit
enzyme comprised of the proteins RecB, RecC (this
family) and RecD. This enzyme plays an important role in
homologous genetic recombination, repair of double
strand DNA breaks resistance to UV irradiation and
chemical DNA-damage. The enzyme (EC:3.1.11.5) catalyzes
ssDNA or dsDNA-dependent ATP hydrolysis, hydrolysis of
ssDNA or dsDNA and unwinding of dsDNA. This family
consists of two AAA domains.
Length = 756
Score = 29.5 bits (67), Expect = 8.4
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 110 ISILIPELSKLLEIYYMLGIRNSSHLLVK-IIQPLS----IPALRLVSYTHPEYLK 160
S+L+ EL L + LG L+V+ +QP S RL SY E+L
Sbjct: 670 PSVLVSELLDYLAQNFYLGDEALKALVVEHPLQPFSPRYFTEDGRLFSY-DREWLA 724
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.139 0.399
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 38,246,206
Number of extensions: 3952373
Number of successful extensions: 3844
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3806
Number of HSP's successfully gapped: 80
Length of query: 737
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 633
Effective length of database: 6,324,786
Effective search space: 4003589538
Effective search space used: 4003589538
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.0 bits)