RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9403
(737 letters)
>3qtd_A PMBA protein; putative modulator of gyrase (PMBA), structural
genomics, PS biology, midwest center for structural
genomics, MCSG; 2.70A {Pseudomonas aeruginosa}
Length = 449
Score = 434 bits (1118), Expect = e-146
Identities = 83/475 (17%), Positives = 174/475 (36%), Gaps = 41/475 (8%)
Query: 269 LLEPFDLDE--KILLKILGNMFKNKVDYADFYFQFTKNENWILEEGIVKTGNFSINQGVG 326
+ P L + + + +I+ + + + + + +G V+T F+ +QG G
Sbjct: 7 AVGPSVLPDLREQVEQIIAEARRQGASACEVAVSLEQGLSTSVRQGEVETVEFNRDQGFG 66
Query: 327 VRAISGDKTAFFYSDDISKNTLINAVKSTRSIANQS-----NGKIKIIKNIKKIKINSLY 381
+ +G + + + + V + +IA + G +++ LY
Sbjct: 67 ITLYAGQRKGSASTSATGEAAIRETVAAALAIARHTSEDECAGLADAALMARELPELDLY 126
Query: 382 SFTDTISSINIREKIKLLERVEKIARLKDPRVIKVIANLSGEYDVILITRN-DGLIVADI 440
++ + ++ E A D RV K + + N G I
Sbjct: 127 HPWS----LSPEQAVERALACEAAAFAADKRVTKADGTTLNTHQGCRVYGNSHGFIGGYA 182
Query: 441 RPLVQLFVTIIVEKNGRREIGNSGCGGRYNYNYFTDMILEKCVSNSVNSALINLEAKPAP 500
L +I E G+ + R + E + A L A+P
Sbjct: 183 STRHSLSCVMIAEGEGQMQRDYWYDVNRRGEALAS---AESIGRRAAERAASRLGARPVQ 239
Query: 501 AGIMKVVLGPGWPGILLHEAIGHGLEGDFNRKGSSAFSNCIGKRIASKEITIVDNGTLAN 560
+ V+ P L +G + G + SS +G+R+ + ++I + L
Sbjct: 240 TAEVPVLFAPEIAVGLFGHFLGA-ISGGSLYRKSSFLEGALGQRLFPEWLSIDERPHLVG 298
Query: 561 RRGSINIDDEGNPTQCTTLIENGILKGYMQDIMNARLMNMSITGNARRESFAHIPIPRMT 620
GS + D +G T +ENG L Y+ + R + + T NA +
Sbjct: 299 ALGSASFDSDGLATYAKPFVENGELVSYVLGTYSGRKLGLPSTANA----------GGVH 348
Query: 621 NTYMLNGKFHPEEIISSVKNGLYATNFSGGQVDITNGKFVFSASKAYIIKNGKITYPVKG 680
N ++ +G +I ++ GL T G V++ G + A+ Y ++NG+I +PV+
Sbjct: 349 NLFVSHGDEDQAALIRRMERGLLVTELMGQGVNLVTGDYSRGAA-GYWVENGEIQFPVQE 407
Query: 681 ATLIGHGPNILKKVSMIGNDMKLDPGVGVCGKDGQMVPVGVGQPTLKIDSITVGG 735
T+ + ++ +++ +G D++ + ++ ++S+ V G
Sbjct: 408 VTIAANLRDLFRRIVAVGKDIERRGNLHT--------------GSVLVESMMVAG 448
>1vpb_A Putative modulator of DNA gyrase; structural genomics, joint for
structural genomics, JCSG, protein structure initiative
hydrolase; 1.75A {Bacteroides thetaiotaomicron} SCOP:
d.283.1.1
Length = 451
Score = 428 bits (1103), Expect = e-144
Identities = 89/466 (19%), Positives = 174/466 (37%), Gaps = 35/466 (7%)
Query: 274 DLDEKILLKILGNMFKNKVDYADFYFQFTKNENWILEEGIVKTGNFSINQGVGVRAISGD 333
D ++K+ + KN A + N ++ L + + + G+ +
Sbjct: 16 DENKKLAQWAMDYALKNGCQAAKVLLYSSSNTSFELRDAKMDRLQQASEGGLSLSLYVDG 75
Query: 334 KTAFFYSDDISKNTLINAVKSTRSIANQSNGKIKII----KNIKKIKINSLYSFTDTISS 389
+ ++ +++ L +K+ + K L + +S
Sbjct: 76 RYGSISTNRLNRKELETFIKNGIDSTRYLAKDEARVLADPSRYYKGGKPDLKLYDAKFAS 135
Query: 390 INIREKIKLLERVEKIARLKDPRVIKVIANLSGEYDVILITRNDGLIVADIRPLVQLFVT 449
+N +KI++ + V + A KD R+I V ++ D ++G L
Sbjct: 136 LNPDDKIEMAKAVAEEALGKDERIISVGSSYGDGEDFAYRLISNGFEGETKSTWYSLSAD 195
Query: 450 IIVEKNGRREIGNSGCGGRYNYNYFTDMILEKCVSNSVNSALINLEAKPAPAGIMKVVLG 509
I + G Y D+I + ++ L L K +G +V+
Sbjct: 196 ITIRGEGEARPSAYWYESS---LYMNDLIKKGIGQKALERVLRKLGQKKVQSGKYTMVVD 252
Query: 510 PGWPGILLHEAIGHGLEGDFNRKGSSAFSNCIGKRIASKEITIVDNGTLANRRGSINIDD 569
P LL I L G ++ +S N + ++IAS +T+ D L G+ D+
Sbjct: 253 PMNSSRLLSPMISA-LNGSALQQKNSFLLNKLNEKIASDRLTLTDEPHLVKASGARYFDN 311
Query: 570 EGNPTQCTTLIENGILKGYMQDIMNARLMNMSITGNARRESFAHIPIPRMTNTYMLNGKF 629
EG T+ ++ + G+L Y D NA+ M + T + + M G
Sbjct: 312 EGIATERRSIFDKGVLNTYFIDTYNAKKMGVDPTISGS------------SILVMETGDK 359
Query: 630 HPEEIISSVKNGLYATNFSGGQVDITNGKFVFSASKAYIIKNGKITYPVKGATLIGHGPN 689
+ + +I+ V+ G+ T F+GG + + G F + ++I+NGK+T PV + G+
Sbjct: 360 NLDGLIAGVEKGILVTGFNGGNNNSSTGDFSYGIE-GFLIENGKLTQPVSEMNVTGNLIT 418
Query: 690 ILKKVSMIGNDMKLDPGVGVCGKDGQMVPVGVGQPTLKIDSITVGG 735
+ + GND +L+ + P+L + + G
Sbjct: 419 LWNSLVATGNDPRLNSSWRI--------------PSLVFEGVDFSG 450
>3tv9_A Putative peptide maturation protein; structural genomics, center
for structural genomics of infec diseases, csgid,
alpha-beta, cytosol; 2.50A {Shigella flexneri}
Length = 457
Score = 378 bits (974), Expect = e-125
Identities = 87/470 (18%), Positives = 178/470 (37%), Gaps = 48/470 (10%)
Query: 274 DLDEKILLKILGNMFKNKVDYADFYFQFTKNENWILEEGIVKTGNFSINQGVGVRAISGD 333
+ E+ + L + K D A+ T + G V+ F+ + +G+ +
Sbjct: 26 KILEEAVSTAL-ELASGKSDGAEVAVSKTTGISVSTRYGEVENVEFNSDGALGITVYHQN 84
Query: 334 KTAFFYSDDISKNTLINAVKSTRSIANQSNG--------KIKIIKNIKKIKINSLYSFTD 385
+ S D+S + V++ IA ++ K + + + L+ +
Sbjct: 85 RKGSASSTDLSPQAIARTVQAALDIARYTSPDPCAGVADKELLAFDAPNLD---LFHPAE 141
Query: 386 TISSINIREKIKLLERVEKIARLKDPRVIKV-IANLSGEYDVILITRNDGLIVADIRPLV 444
++ E I+L R E+ A D R+ + + Y V + + G++
Sbjct: 142 ----VSPDEAIELAARAEQAALQADKRITNTEGGSFNSHYGVKVFGNSHGMLQGYCSTRH 197
Query: 445 QLFVTIIVEKNGRREIGNSGCGGRYNYNYFTDMIL-EKCVSNSVNSALINLEAKPAPAGI 503
LF +I E+NG E + GR +D+ E ++ L L +
Sbjct: 198 SLFSCVIAEENGDMERDYAYTIGRA----MSDLQTPEWVGADCARRTLSRLSPRKLSTMK 253
Query: 504 MKVVLGPGWPGILLHEAIGHGLEGDFNRKGSSAFSNCIGKRIASKEITIVDNGTLANRRG 563
V+ L +G + G + S+ + +GK+I +TI ++ L
Sbjct: 254 APVIFANEVATGLFGHLVGA-IAGGSVYRKSTFLLDSLGKQILPDWLTIEEHPHLLKGLA 312
Query: 564 SINIDDEGNPTQCTTLIENGILKGYMQDIMNARLMNMSITGNARRESFAHIPIPRMTNTY 623
S D EG T+ +I++GIL ++ +AR + + TG+A + N
Sbjct: 313 STPFDSEGVRTERRDIIKDGILTQWLLTSYSARKLGLKSTGHA----------GGIHNWR 362
Query: 624 MLNGKFHPEEIISSVKNGLYATNFSGGQVDITNGKFVFSASKAYIIKNGKITYPVKGATL 683
+ E+++ + GL T G V G + A+ + ++NG+I YPV T+
Sbjct: 363 IAGQGLSFEQMLKEMGTGLVVTELMGQGVSAITGDYSRGAA-GFWVENGEIQYPVSEITI 421
Query: 684 IGHGPNILKKVSMIGNDMKLDPGVGVCGKDGQMVPVGVGQPTLKIDSITV 733
G+ ++ + + +GND++ + ++ + + +
Sbjct: 422 AGNLKDMWRNIVTVGNDIETRSNIQC--------------GSVLLPEMKI 457
>1vl4_A PMBA-related protein; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS regulation; 1.95A {Thermotoga maritima} SCOP:
d.283.1.1
Length = 447
Score = 294 bits (754), Expect = 3e-92
Identities = 90/452 (19%), Positives = 178/452 (39%), Gaps = 37/452 (8%)
Query: 289 KNKVDYADFYFQFTKNENWILEEGIVKTGNFSINQGVGVRAISGDKTAFFYSDDIS--KN 346
K F T+ + L G + + V ++ + KT F + + +
Sbjct: 27 KKNGVEVQISFLETREFSLRLANGDLDQYTDAGKFNVEIKVLKDGKTGTFRTQVLENPEK 86
Query: 347 TLINAVKSTRSIANQSNGKIKIIKNIKKIKINSLYSFTDTISSINIREKIKLLERVEKIA 406
A+ + + S K + K+ + Y ++++EK+ + ++ + A
Sbjct: 87 CFEEALSNLQ--VKDSEEKEYFFEGGKEYREMETYV--GRFEKLSVKEKMDMAKKAHESA 142
Query: 407 RLKDPRVIKVI-ANLSGEYDVILITRNDGLIVADIRPLVQLFVTIIVEKNGRREIGNSGC 465
KD RV+ V +IT GL V LF I ++ G+
Sbjct: 143 A-KDERVVMVPTVMYKDMVIKKIITNTLGLDVESQMDGGFLFAMAIA-RDANPRSGSWYE 200
Query: 466 GGRYNYNYFTDMILEKCVSNSVNSALINLEAKPAPAGIMKVVLGPGWPGILLHEAIGHGL 525
R D+ E+ + A+ + +K P+G V++ + L E +
Sbjct: 201 LART----PEDLNPEEIGKRAAEEAISLIGSKTIPSGKYPVLMRN-TALLDLMEMFIPMI 255
Query: 526 EGDFNRKGSSAFSNCIGKRIASKEITIVDNGTLANRRGSINIDDEGNPTQCTTLIENGIL 585
+ +K S +G+++ + ++I D S DDEG PT ++ENG+L
Sbjct: 256 SAENVQKNLSPLKGKLGEQVGNPAVSIKDLPYHPKGLSSTPFDDEGVPTTEKFVLENGVL 315
Query: 586 KGYMQDIMNARLMNMSITGNARRESFAHIPIPRMTNTYMLNGKFHPEEIISSVKNGLYAT 645
K ++ ++ AR + TGN R N ++ G+ EE++ + G+ T
Sbjct: 316 KTFLHNLKTARKEGVEPTGNGFVGG------IRPVNLMLMPGEKSFEELLKEMDRGVVIT 369
Query: 646 NFSG--GQVDITNGKFVFSASKAYIIKNGKITYPVKGATLIGHGPNILKKVSMIGNDMKL 703
G + +G+F A Y ++NG+I + V+ T+ G+ ++L+K+ ++GND+K+
Sbjct: 370 EVEGMHAGANSISGEFSLFAK-GYWVENGEIAHGVEDITISGNFLDLLRKIVLVGNDVKV 428
Query: 704 DPGVGVCGKDGQMVPVGVGQPTLKIDSITVGG 735
P++ ++ + V G
Sbjct: 429 SQHTIA--------------PSVLVEVLDVAG 446
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 66.8 bits (162), Expect = 2e-11
Identities = 61/502 (12%), Positives = 137/502 (27%), Gaps = 133/502 (26%)
Query: 59 KKGIPVFIHGIKKNFG---------RITTYEILKKLGYFAVSSKKKAIKYL------KLK 103
K + VF NF I + E + + L K +
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI--IMSKDAVSGTLRLFWTLLSKQE 76
Query: 104 RLV--FMDISI---------------LIPELSKLLEIYYMLGIRNSSHLLVKIIQPLSIP 146
+V F++ + P + + I R+ + ++ ++
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ----RDRLYNDNQVFAKYNVS 132
Query: 147 ALRLVSYTHPEYLKILSDYFYNEKSLGDIFL--MQGTEGE--VIPNICNSKQI------- 195
R + L + ++ + + G+ G+ V ++C S ++
Sbjct: 133 --R------LQPYLKLRQALLELRPAKNVLIDGVLGS-GKTWVALDVCLSYKVQCKMDFK 183
Query: 196 IHWFH--------------DNKYTKLTKEQNKEISFPKNSNINDNVLWIQSVLDNKLPIP 241
I W + ++ SNI + IQ+ L L
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS--SNIKLRIHSIQAELRRLLKSK 241
Query: 242 STIINQVKNCILISQKNIHPL-NIARSILLEPFDLDEKILL--------KILGNMFKNKV 292
+NC+L+ L N+ + F+L KILL L +
Sbjct: 242 -----PYENCLLV-------LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 293 DYADFYFQFTKNE------NWI------LEEGIVKTGNFSINQGVGVRAISGDKTAFFYS 340
T +E ++ L ++ T ++ + +I +
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI-IA-ESIRDGLATWDNW 347
Query: 341 DDISKNTLINAVKSTRSIANQSNGKIK-------II-KNIKKIKINSLYSFTDTISSINI 392
++ + L ++S S+ + + + + I L + ++
Sbjct: 348 KHVNCDKLTTIIES--SLNVLEPAEYRKMFDRLSVFPPSA-HIPTILLSLIWFDVIKSDV 404
Query: 393 REKIKLLERVEKIARLKDPRVIKVIANLSGEYDVILITRNDGLIVADIRPLVQLFVTIIV 452
+ L + + + I + + L + + L +I+
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISI-------PSIYLELK------VKLENEYALHRSIVD 451
Query: 453 EKNGRREIGNSGCGGRYNYNYF 474
N + + Y YF
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYF 473
Score = 66.8 bits (162), Expect = 2e-11
Identities = 90/553 (16%), Positives = 169/553 (30%), Gaps = 137/553 (24%)
Query: 1 MRIKGES-----VEEIS----GFL-NAINSLFIPLEIPISKYAPIIIPSYNGSRRF--MN 48
+ K E VEE+ FL + I + + Y YN ++ F N
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 49 VI---PLLAL---LLS-KKGIPVFIHGIKKNFGR-------ITTYEILKKLGYFAVSSKK 94
V P L L LL + V I G G+ +Y++ K+ +
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDG-VLGSGKTWVALDVCLSYKVQCKMDF------- 182
Query: 95 KAIKYLKLKRLVFMDISILIPELSKLLEIYYMLGIRNSSHLLVKIIQPLSIPALR--LVS 152
I +L LK ++L L +I R+ +K+ LR L S
Sbjct: 183 -KIFWLNLKN-CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 153 YTHPEYLKILSDYFYNEKSLGDIFLMQ-----GTEGEVIPNICNSKQIIHWFHDNKYTKL 207
+ L +L + N K+ + F + T + + + ++ H D+ L
Sbjct: 241 KPYENCLLVLLN-VQNAKAW-NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 208 TKEQNKEISFPKNSNINDNVLWIQSVLDNKLPIPSTIINQVKNCILISQKNIHPLNIARS 267
T ++ K + K ++ LP +V +P
Sbjct: 299 TPDEVKSL-LLK---------YL-DCRPQDLP------REV--------LTTNPR----- 328
Query: 268 ILLEPFDLDEKILLKILGNMFKNKVDYADFYFQFTKNENWILEEGIVKTGNFSINQ--GV 325
L I+ ++ + D + ++ L I+++ S+N
Sbjct: 329 ------------RLSIIAESIRDGLATWDNWKHVNCDK---LTT-IIES---SLNVLEPA 369
Query: 326 GVRAISGDKTAFFYSDDISKNTL----INAVKS-TRSIANQSNGKIKIIKNIKKIKINSL 380
R + + F S I L + +KS + N+ + + K K+ I S+
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI-SI 428
Query: 381 YSFTDTISSINIREKIKLLERVEK----IARLKDPRVIKVIANLSGEYDVILITRNDG-- 434
SI + K+KL + P+ + D ++ D
Sbjct: 429 P-------SIYLELKVKLENEYALHRSIVDHYNIPKTF--------DSDDLIPPYLDQYF 473
Query: 435 -------LIVADIRPLVQLFVTIIVE----KNGRREIGNSGCGGRYNYNYFTDMILEK-- 481
L + + LF + ++ + R + N + K
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 482 -CVSNSVNSALIN 493
C ++ L+N
Sbjct: 534 ICDNDPKYERLVN 546
Score = 37.1 bits (85), Expect = 0.026
Identities = 47/384 (12%), Positives = 108/384 (28%), Gaps = 117/384 (30%)
Query: 381 YSFTDTISSINIREKIKLLE--RVEKIARLKDPRVIKVIANLSGEYDVILITRND----- 433
Y + D I S+ + + V+ + + ++ E D I+++++
Sbjct: 16 YQYKD-ILSVFEDAFVDNFDCKDVQDMPK----SILS-----KEEIDHIIMSKDAVSGTL 65
Query: 434 ---GLIVADIRPLVQLFVTIIVEKNGRREIGNSGCGGRYNYNYFTDMILEKCVSNSVN-- 488
+++ +VQ FV ++ N Y + I + S+
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRIN---------------YKFLMSPIKTEQRQPSMMTR 110
Query: 489 ---SALINLEAKPAPAGIMKVV--------------LGPGWPGILLHEAIGHGLEGDFNR 531
L V L P +L+ G+ G
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA-KNVLI-----DGVLG---- 160
Query: 532 KGSSAFSNCIGKRIASKEITIVDNGTLANRRGSINIDDEG---NPTQCTTLIENGILKGY 588
GK T V + + +D + N C + +L+
Sbjct: 161 ---------SGK-------TWVALDVCLSYKVQCKMDFKIFWLNLKNCNS--PETVLE-- 200
Query: 589 MQDIMNARLMNMSITGNARRESFAHIPIP----RMTNTYMLNGKFHPEE--IISSVKNGL 642
++ L + +R + ++I + + +L K + ++ +V+N
Sbjct: 201 ---MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257
Query: 643 YATNFSGG-QVDI-TNGKFVFSASKAYIIKNGKITYPVKG----------ATLIGHGPNI 690
F+ ++ + T K V A + + + + P
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 691 LKK---------VSMIGNDMKLDP 705
L + +S+I ++
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGL 341
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.8 bits (121), Expect = 2e-06
Identities = 40/210 (19%), Positives = 70/210 (33%), Gaps = 69/210 (32%)
Query: 1 M-RIKGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVI---PL---- 52
M I + E++ ++N NS +P K + I NG++ V+ P
Sbjct: 338 MLSISNLTQEQVQDYVNKTNS-----HLPAGK--QVEISLVNGAKNL--VVSGPPQSLYG 388
Query: 53 LALLLSKKGIPVFIHGIKKNFGRITTYEILKKLGYFAVSSKKKAIKYLKLKRLVFMDISI 112
L L L K P G+ ++ RI F S +K F+ ++
Sbjct: 389 LNLTLRKAKAP---SGLDQS--RIP----------F--SERKLKFSN------RFLPVA- 424
Query: 113 LIPELSKLLEIYYMLGIRNSSHLLVKIIQPLSIPALRLVSYTHPEYLKILSDYFYNEKSL 172
P S LL +S L I + L + + + ++I Y+
Sbjct: 425 -SPFHSHLLV--------PASDL---INKDLVKNNVSF----NAKDIQI---PVYDTFDG 465
Query: 173 GDIFLMQGTEGEVIPNICNSKQI----IHW 198
D ++ G + I + I + W
Sbjct: 466 SD---LRVLSGSISERIVD--CIIRLPVKW 490
Score = 44.3 bits (104), Expect = 2e-04
Identities = 64/370 (17%), Positives = 126/370 (34%), Gaps = 122/370 (32%)
Query: 12 SGFL--NAINSLFIPL----EIPISKYAPIIIPSYNGSRRFMNVIPLL-----ALLLSKK 60
+ +L N I++L L + + K +I +Y +R P AL +
Sbjct: 93 NCYLEGNDIHALAAKLLQENDTTLVK-TKELIKNYITARIMAK-RPFDKKSNSALFRAVG 150
Query: 61 GIPVFIHGIKKNF---GRITTY--EILKKLGYFAVSSKKKAIKYLKLKRLVFMDISILIP 115
+ I F G Y E L+ L + Y L + + +
Sbjct: 151 EGNAQLVAI---FGGQGNTDDYFEE-LRDL--YQT--------YHVLVGDLIKFSAETLS 196
Query: 116 ELSKL---LEIYYMLGI------RNSSHL-----LVKIIQPLSIPALRLVSYTHPEYLKI 161
EL + E + G+ N S+ L+ I P+S P + ++ H
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI--PISCPLIGVIQLAH------ 248
Query: 162 LSDYFYNEKSLGDIFLMQGTEGEVIPNIC----NSKQII---------HW--FHDNKYTK 206
Y K LG T GE+ + +S+ ++ W F +
Sbjct: 249 ---YVVTAKLLG------FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 207 LT-------KEQNKEISFPKNSNINDNVLWIQSVLDNKLPIPS--------------TII 245
+T + ++P N+++ ++L + L+N +PS +
Sbjct: 300 ITVLFFIGVRCYE---AYP-NTSLPPSIL--EDSLENNEGVPSPMLSISNLTQEQVQDYV 353
Query: 246 NQVKNCILISQKNIH-PL-NIARSILL--EPFDLD------EKILLKILGNMFKNKVDYA 295
N+ N L + K + L N A+++++ P L K K + ++++ ++
Sbjct: 354 NKT-NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKA--KAPSGLDQSRIPFS 410
Query: 296 D----FYFQF 301
+ F +F
Sbjct: 411 ERKLKFSNRF 420
Score = 42.3 bits (99), Expect = 6e-04
Identities = 37/240 (15%), Positives = 65/240 (27%), Gaps = 60/240 (25%)
Query: 438 ADIRPLVQLFVTI--IVEKN-GRREIGNSGCGGRYNYNYFTDMILEKCVSNSVNSALINL 494
AD +I IV N I G G+ ++ MI E V + + I
Sbjct: 1649 ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFK 1708
Query: 495 EAKPAPAGIMKVVLGPGW---------PGILLHE-AIGHGLEGDFNRKGSSAF---SNCI 541
E P + L E A L+ + F S +
Sbjct: 1709 EINEHSTSYTFR--SEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS--L 1764
Query: 542 GKRIASKEITIVDNGTLANRRGSINIDDE-------GNPTQCTTLIENGILKGYMQDIMN 594
G E LA+ ++I+ G Q + L ++
Sbjct: 1765 G------EYA-----ALASLADVMSIESLVEVVFYRGMTMQ--VAVPRDELGRSNYGMIA 1811
Query: 595 ARLMNMSITGNARRESFAHI--PIPRMTNTYMLNGKFHPEEIISSVKNGLYATNFSGGQV 652
++ + + E+ ++ + + T ++ V N Y N Q
Sbjct: 1812 INPGRVAASFSQ--EALQYVVERVGKRTG-----------WLVEIV-N--Y--NVENQQY 1853
Score = 40.0 bits (93), Expect = 0.003
Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 45/102 (44%)
Query: 300 QFTKNENWILEEGIVKTGNFSIN----QGVGVRAISGDKTAFFYSDDISKNTLINAVKST 355
+ K W++E IV N+ N Q V +GD A +T+ N +
Sbjct: 1832 RVGKRTGWLVE--IV---NY--NVENQQYV----AAGDLRAL--------DTVTNVLN-- 1870
Query: 356 RSIANQSNGKIKIIKNIKKIKINSLYSFTDTISSINIREKIK 397
IK+ + I I++ S E+++
Sbjct: 1871 ---------FIKL-QKIDIIELQKSLSL----------EEVE 1892
>1vqu_A Anthranilate phosphoribosyltransferase 2; 17130499, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative, PSI; 1.85A {Nostoc SP}
Length = 374
Score = 35.7 bits (83), Expect = 0.052
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 1 MRIKGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYN 41
+ KG S +E++G + S PI ++
Sbjct: 69 LNFKGVSADELTGMAEVLQSQSKMGTGENYSQLPITNSPFS 109
>2elc_A Trp D, anthranilate phosphoribosyltransferase; structural
genomics, NPPSFA, national project O structural and
functional analyses; 1.55A {Thermus thermophilus} SCOP:
a.46.2.1 c.27.1.1 PDB: 1v8g_A
Length = 329
Score = 35.2 bits (82), Expect = 0.064
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 1 MRIKGESVEEISGFLNAINSLFIPLEIP 28
+ ++GE EI+ A+ PL +
Sbjct: 42 LSLRGERPHEIAAMARAMREAARPLRVH 69
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces
cerevisiae} SCOP: d.14.1.8
Length = 288
Score = 34.5 bits (80), Expect = 0.091
Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 261 PLNIARSILLEPFDLD------EKILLKILGNMFKNKVDYADFYFQFTKNENWILEEGI 313
PLN++R +L + + K L++ + ++ + FY F+KN ++ G+
Sbjct: 103 PLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAEDSEQFEKFYSAFSKN----IKLGV 157
>1usu_A Heat shock protein HSP82; chaperone/complex, chaperone, activator,
HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.14.1.8
PDB: 1usv_A
Length = 260
Score = 34.5 bits (80), Expect = 0.093
Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 261 PLNIARSILLEPFDLD------EKILLKILGNMFKNKVDYADFYFQFTKNENWILEEGI 313
PLN++R +L + + K L++ + ++ + FY F+KN ++ G+
Sbjct: 105 PLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAEDSEQFEKFYSAFSKN----IKLGV 159
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics,
stress response protein, chaperone, structural GE
consortium, SGC; 2.50A {Leishmania major}
Length = 444
Score = 35.0 bits (81), Expect = 0.094
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
Query: 261 PLNIARSILLEPFDLD------EKILLKILGNMFKNKVDYADFYFQFTKNENWILEEGIV 314
PLNI+R L + L K L++ + +NK DY FY QF KN ++ GI
Sbjct: 121 PLNISRENLQQNKILKVIRKNIVKKCLEMFDEVAENKEDYKQFYEQFGKN----IKLGIH 176
>1khd_A Anthranilate phosphoribosyltransferase; type 3 PRT fold,
nucleotide binding fold; 1.86A {Pectobacterium
carotovorum} SCOP: a.46.2.1 c.27.1.1 PDB: 1kgz_A
Length = 345
Score = 34.4 bits (80), Expect = 0.10
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 1 MRIKGESVEEISGFLNAINSLFIPLEIP 28
M+++GE EEI+G +A+ + P P
Sbjct: 55 MKMRGERPEEIAGAASALLADAQPFPRP 82
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural
genomics consortium, SGC, HE protein, chaperone; 2.28A
{Homo sapiens}
Length = 268
Score = 34.4 bits (80), Expect = 0.10
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 10/59 (16%)
Query: 261 PLNIARSILLEPFDLD------EKILLKILGNMFKNKVDYADFYFQFTKNENWILEEGI 313
PLNI+R +L + L K L++ + ++K +Y FY F+KN L+ GI
Sbjct: 105 PLNISREMLQQSKILKVIRKNIVKKCLELFSELAEDKENYKKFYEAFSKN----LKLGI 159
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat
shock protein, CO-chaperone, ATP-binding, heat shock;
3.0A {Saccharomyces cerevisiae}
Length = 405
Score = 34.6 bits (80), Expect = 0.12
Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 261 PLNIARSILLEPFDLD------EKILLKILGNMFKNKVDYADFYFQFTKNENWILEEGI 313
PLN++R +L + + K L++ + ++ + FY F+KN ++ G+
Sbjct: 103 PLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAEDSEQFEKFYSAFSKN----IKLGV 157
>1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD;
nucleoside-phosphorylases; 2.05A {Sulfolobus
solfataricus} SCOP: a.46.2.1 c.27.1.1 PDB: 1gxb_A
1zxy_A* 1zyk_A* 2gvq_A* 3gbr_A*
Length = 345
Score = 34.1 bits (79), Expect = 0.14
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 1 MRIKGESVEEISGFLNAINSLFIPLEIP 28
+R+KGES EI GF A+ L I +++P
Sbjct: 45 LRMKGESKNEIVGFARAMRELAIKIDVP 72
>3qr9_A Anthranilate phosphoribosyltransferase; anthranilic acids, M
tryptophan, magnesium binding, phosphoribosyl
pyrophosphate transferase; 1.87A {Mycobacterium
tuberculosis} PDB: 1zvw_A* 2bpq_A
Length = 377
Score = 34.1 bits (79), Expect = 0.14
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 1 MRIKGESVEEISGFLNAINSLFIPLEIP 28
M +K + +E+ + S PL
Sbjct: 68 MTMKAPTADEVGELAGVMLSHAHPLPAD 95
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer,
hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Length = 448
Score = 33.8 bits (78), Expect = 0.22
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 10/60 (16%)
Query: 261 PLNIARSILLEPFDLD------EKILLKILGNMFKNKVDYADFYFQFTKNENWILEEGIV 314
PLNI+R +L + L K L++ + ++K +Y FY QF+KN ++ GI
Sbjct: 105 PLNISREMLQQSKILKVIRKNLVKKCLELFTELAEDKENYKKFYEQFSKN----IKLGIH 160
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.27
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 33/58 (56%)
Query: 93 KKKAIKYLKLKRLVFMDISILIPELSKLLEIYYMLGIRNSSHLLVKIIQPLSIPALRL 150
+K+A+K KL + S L++Y S PAL +
Sbjct: 18 EKQALK--KL-------------QAS--LKLY----------------ADDSAPALAI 42
Score = 28.8 bits (63), Expect = 4.6
Identities = 7/31 (22%), Positives = 10/31 (32%), Gaps = 13/31 (41%)
Query: 25 LEIPISKYAPIIIPSYNGSRRFMNVIPLLAL 55
L+ + YA S P LA+
Sbjct: 25 LQASLKLYAD-------DS------APALAI 42
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme,
ATP-binding, DNA-binding, H nucleotide-binding, serine
protease, stress respo; 2.60A {Escherichia coli}
Length = 252
Score = 31.3 bits (72), Expect = 0.83
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 17/73 (23%)
Query: 367 KIIKNIKKI---------KINSLYSFTDTISS---INIREKIKLLERVEKIARLKDPRVI 414
IK KKI I+ DTI++ + + +K +LE + RL+
Sbjct: 147 GYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLE----- 201
Query: 415 KVIANLSGEYDVI 427
++A + E D++
Sbjct: 202 YLMAMMESEIDLL 214
>1y6z_A Heat shock protein, putative; chaperone, structural genomics,
structural genom consortium, SGC, unknown function;
1.88A {Plasmodium falciparum}
Length = 263
Score = 31.4 bits (72), Expect = 0.85
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 11/60 (18%)
Query: 261 PLNIARSILLEPFDLD------EKILLKILGNMFKNKVD-YADFYFQFTKNENWILEEGI 313
PLN+ R IL + L + ++ + + D + F F K L+ G+
Sbjct: 107 PLNVGREILQKSKMLSIINKRIVLKSISMMKGLKETGGDKWTKFLNTFGKY----LKIGV 162
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA
bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB:
3ez6_A* 3ez7_A
Length = 398
Score = 30.9 bits (70), Expect = 1.7
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 394 EKIKLLERVEKIARLKDPRVIKVIANLSGEYDVILI 429
+ +L + VI L +YD IL+
Sbjct: 215 DWRELCNEHLPGQNIHAVLKENVIDKLKSDYDFILV 250
>3m65_A ATP-dependent protease LA 1; coiled-coil, ATP-binding, hydrolase,
nucleotide-binding, Pro serine protease, stress
response; 2.60A {Bacillus subtilis}
Length = 209
Score = 30.1 bits (69), Expect = 1.9
Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 12/70 (17%)
Query: 363 NGKIK--IIKNIKKIKINSLYSFTDTISS---INIREKIKLLERVEKIARLKDPRVIKVI 417
+ KI + I+ D ++S + +++K +LE + RL KVI
Sbjct: 143 SKKISAETYAAVTDIE--EPGRMADIVASHLPLKLKDKQDILETADVKDRLN-----KVI 195
Query: 418 ANLSGEYDVI 427
++ E +V+
Sbjct: 196 DFINNEKEVL 205
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural
genomics, protein structure initiativ midwest center for
structural genomics; HET: MSE; 2.10A {Helicobacter
pylori}
Length = 229
Score = 30.1 bits (68), Expect = 2.0
Identities = 17/110 (15%), Positives = 38/110 (34%), Gaps = 16/110 (14%)
Query: 22 FIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYEI 81
+ PLE+ + + +I S N + + L + IP + T +
Sbjct: 28 YYPLELDPTPFNALIFTSKNAVFSLLETLKNSPKLKMLQNIPAYALSEP-------TAKT 80
Query: 82 LKKLGYFAVSSKKKA---------IKYLKLKRLVFMDISILIPELSKLLE 122
L+ + +KA L+ K ++++ ++ L +L
Sbjct: 81 LQDHHFKVAFMGEKAHGKEFVQEIFPLLEKKSVLYLRAKEIVSSLDTILL 130
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli,
hydrolase; 1.90A {Escherichia coli}
Length = 303
Score = 30.3 bits (69), Expect = 2.4
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 11/60 (18%)
Query: 261 PLNIARSILLEPFDLD------EKILLKILGNMFKN-KVDYADFYFQFTKNENWILEEGI 313
PLN++R IL + K +L++L + K+ Y F+ QF L+EG
Sbjct: 103 PLNVSREILQDSTVTRNLRNALTKRVLQMLEKLAKDDAEKYQTFWQQFGLV----LKEGP 158
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96;
HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A*
2o1w_A 2o1t_A
Length = 666
Score = 29.6 bits (67), Expect = 4.4
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 11/60 (18%)
Query: 261 PLNIARSILLEPFDLD------EKILLKILGNMFKNKVDYADFYFQFTKNENWILEEGIV 314
PLN++R L + L + L ++ + K F+ +F N ++ G++
Sbjct: 355 PLNVSRETLQQHKLLKVIRKKLVRKTLDMIKKIADEK-YNDTFWKEFGTN----IKLGVI 409
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell
division, cell cycle; 2.60A {Archaeoglobus fulgidus}
SCOP: c.37.1.10
Length = 263
Score = 28.7 bits (65), Expect = 6.3
Identities = 4/28 (14%), Positives = 14/28 (50%)
Query: 402 VEKIARLKDPRVIKVIANLSGEYDVILI 429
+E + + ++ V+ + D++L+
Sbjct: 89 LEGLRKANPEKLEDVLTQIMESTDILLL 116
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A
{Escherichia coli} PDB: 2iop_A
Length = 624
Score = 29.1 bits (66), Expect = 6.9
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 11/61 (18%)
Query: 261 PLNIARSILLEPFDLD------EKILLKILGNMFKN-KVDYADFYFQFTKNENWILEEGI 313
PLN++R IL + K +L++L + K+ Y F+ QF L+EG
Sbjct: 331 PLNVSREILQDSTVTRNLRNALTKRVLQMLEKLAKDDAEKYQTFWQQFGLV----LKEGP 386
Query: 314 V 314
Sbjct: 387 A 387
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A
{Drosophila melanogaster} SCOP: a.238.1.1
Length = 244
Score = 28.3 bits (62), Expect = 8.9
Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 7/101 (6%)
Query: 57 LSKKGIPVFIHGIKKNFGRITTYEILKKLGYFAVSSKKKAIKYLKLKRLVFMDISILIPE 116
+++ + ++K+ GR +IL+ LG + + F
Sbjct: 1 MTENKGIMLAKSVQKHAGR-AKEKILQNLG---KVDRTADEIFDDHLNN-FNRQQASANR 55
Query: 117 LSKLLEIY--YMLGIRNSSHLLVKIIQPLSIPALRLVSYTH 155
L K Y + + +S L+ + + P
Sbjct: 56 LQKEFNNYIRCVRAAQAASKTLMDSVCEIYEPQWSGYDALQ 96
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV,
GRAM-positive bacteria, quinolone target, DNA binding,
DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae}
PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A*
3rad_A* 3rae_A* 3raf_A*
Length = 496
Score = 28.6 bits (65), Expect = 9.1
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 95 KAIKYLKLKRLVFMDISILIPELSKLLE-IYYMLGIRNSSHLLVKII 140
+AI L+L RL D+ +L E ++L E I + I + ++
Sbjct: 417 EAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLM 463
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein;
2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Length = 403
Score = 28.6 bits (64), Expect = 9.3
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 396 IKLLERVEKIARLKDPRVIKVIANLSGEYDVILI 429
+L+E + +I ++ +YD I I
Sbjct: 220 RELVEEHLPGQNQYEILRRNIIDRVADDYDFIFI 253
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation,
protein-protein interaction, PR kinase, cell cycle,
transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP:
d.144.1.7
Length = 346
Score = 28.3 bits (64), Expect = 9.6
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 14/56 (25%)
Query: 372 IKKIKINSLYSFTDTISSINIREKIKLLERVEKIARLKDPRVIKVIANLSGEYDVI 427
IKKIK+ D I+ +RE IKLL+ L P +I + D
Sbjct: 40 IKKIKLGHRSEAKDGINRTALRE-IKLLQ------ELSHPNIIGL-------LDAF 81
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.139 0.399
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,429,137
Number of extensions: 736450
Number of successful extensions: 1703
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1653
Number of HSP's successfully gapped: 56
Length of query: 737
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 636
Effective length of database: 3,881,772
Effective search space: 2468806992
Effective search space used: 2468806992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.4 bits)