RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9403
(737 letters)
>d1vpba_ d.283.1.1 (A:) Putative modulator of DNA gyrase BT3649
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 439
Score = 247 bits (632), Expect = 3e-75
Identities = 88/466 (18%), Positives = 173/466 (37%), Gaps = 35/466 (7%)
Query: 274 DLDEKILLKILGNMFKNKVDYADFYFQFTKNENWILEEGIVKTGNFSINQGVGVRAISGD 333
D ++K+ + KN A + N ++ L + + + G+ +
Sbjct: 4 DENKKLAQWAMDYALKNGCQAAKVLLYSSSNTSFELRDAKMDRLQQASEGGLSLSLYVDG 63
Query: 334 KTAFFYSDDISKNTLINAVKSTRSIANQSNGK----IKIIKNIKKIKINSLYSFTDTISS 389
+ ++ +++ L +K+ + K L + +S
Sbjct: 64 RYGSISTNRLNRKELETFIKNGIDSTRYLAKDEARVLADPSRYYKGGKPDLKLYDAKFAS 123
Query: 390 INIREKIKLLERVEKIARLKDPRVIKVIANLSGEYDVILITRNDGLIVADIRPLVQLFVT 449
+N +KI++ + V + A KD R+I V ++ D ++G L
Sbjct: 124 LNPDDKIEMAKAVAEEALGKDERIISVGSSYGDGEDFAYRLISNGFEGETKSTWYSLSAD 183
Query: 450 IIVEKNGRREIGNSGCGGRYNYNYFTDMILEKCVSNSVNSALINLEAKPAPAGIMKVVLG 509
I + G + Y D+I + ++ L L K +G +V+
Sbjct: 184 ITIRGEGEA---RPSAYWYESSLYMNDLIKKGIGQKALERVLRKLGQKKVQSGKYTMVVD 240
Query: 510 PGWPGILLHEAIGHGLEGDFNRKGSSAFSNCIGKRIASKEITIVDNGTLANRRGSINIDD 569
P LL I G ++ +S N + ++IAS +T+ D L G+ D+
Sbjct: 241 PMNSSRLLSPMISAL-NGSALQQKNSFLLNKLNEKIASDRLTLTDEPHLVKASGARYFDN 299
Query: 570 EGNPTQCTTLIENGILKGYMQDIMNARLMNMSITGNARRESFAHIPIPRMTNTYMLNGKF 629
EG T+ ++ + G+L Y D NA+ M + I + M G
Sbjct: 300 EGIATERRSIFDKGVLNTYFIDTYNAKKMGV------------DPTISGSSILVMETGDK 347
Query: 630 HPEEIISSVKNGLYATNFSGGQVDITNGKFVFSASKAYIIKNGKITYPVKGATLIGHGPN 689
+ + +I+ V+ G+ T F+GG + + G F + ++I+NGK+T PV + G+
Sbjct: 348 NLDGLIAGVEKGILVTGFNGGNNNSSTGDFSYGIE-GFLIENGKLTQPVSEMNVTGNLIT 406
Query: 690 ILKKVSMIGNDMKLDPGVGVCGKDGQMVPVGVGQPTLKIDSITVGG 735
+ + GND +L+ + P+L + + G
Sbjct: 407 LWNSLVATGNDPRLNSSWRI--------------PSLVFEGVDFSG 438
>d1vl4a_ d.283.1.1 (A:) PmbA-related protein TM0727 {Thermotoga
maritima [TaxId: 2336]}
Length = 433
Score = 235 bits (599), Expect = 2e-70
Identities = 81/462 (17%), Positives = 172/462 (37%), Gaps = 36/462 (7%)
Query: 274 DLDEKILLKILGNMFKNKVDYADFYFQFTKNENWILEEGIVKTGNFSINQGVGVRAISGD 333
+ +++ + K F T+ + L G + + V ++ +
Sbjct: 5 EFKDRLF-----ALAKKNGVEVQISFLETREFSLRLANGDLDQYTDAGKFNVEIKVLKDG 59
Query: 334 KTAFFYSDDISKNTLINAVKSTRSIANQSNGKIKIIKNIKKIKINSLYSFTDTISSINIR 393
KT F + + + S + + K + + ++ ++++
Sbjct: 60 KTGTFRTQVLEN--PEKCFEEALSNLQVKDSEEKEYFFEGGKEYREMETYVGRFEKLSVK 117
Query: 394 EKIKLLERVEKIARLKDPRVIKVIANLSGEYDVILITRNDGLIVADIRPLVQLFVTIIVE 453
EK+ + ++ + A + V+ +IT GL V LF I
Sbjct: 118 EKMDMAKKAHESAAKDERVVMVPTVMYKDMVIKKIITNTLGLDVESQMDGGFLFAMAIAR 177
Query: 454 KNGRREIGNSGCGGRYNYNYFTDMILEKCVSNSVNSALINLEAKPAPAGIMKVVLGPGWP 513
R D+ E+ + A+ + +K P+G V++
Sbjct: 178 DANPRSGSWYELARTPE-----DLNPEEIGKRAAEEAISLIGSKTIPSGKYPVLMRN-TA 231
Query: 514 GILLHEAIGHGLEGDFNRKGSSAFSNCIGKRIASKEITIVDNGTLANRRGSINIDDEGNP 573
+ L E + + +K S +G+++ + ++I D S DDEG P
Sbjct: 232 LLDLMEMFIPMISAENVQKNLSPLKGKLGEQVGNPAVSIKDLPYHPKGLSSTPFDDEGVP 291
Query: 574 TQCTTLIENGILKGYMQDIMNARLMNMSITGNARRESFAHIPIPRMTNTYMLNGKFHPEE 633
T ++ENG+LK ++ ++ AR + TGN R N ++ G+ EE
Sbjct: 292 TTEKFVLENGVLKTFLHNLKTARKEGVEPTGNGFVGGI------RPVNLMLMPGEKSFEE 345
Query: 634 IISSVKNGLYATNFSGGQ--VDITNGKFVFSASKAYIIKNGKITYPVKGATLIGHGPNIL 691
++ + G+ T G + +G+F A Y ++NG+I + V+ T+ G+ ++L
Sbjct: 346 LLKEMDRGVVITEVEGMHAGANSISGEFSLFAK-GYWVENGEIAHGVEDITISGNFLDLL 404
Query: 692 KKVSMIGNDMKLDPGVGVCGKDGQMVPVGVGQPTLKIDSITV 733
+K+ ++GND+K+ P++ ++ + V
Sbjct: 405 RKIVLVGNDVKVSQHTIA--------------PSVLVEVLDV 432
>d2elca2 c.27.1.1 (A:66-329) Anthranilate phosphoribosyltransferase
(TrpD) {Thermus thermophilus [TaxId: 274]}
Length = 264
Score = 48.7 bits (115), Expect = 8e-07
Identities = 27/159 (16%), Positives = 64/159 (40%), Gaps = 2/159 (1%)
Query: 42 GSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYEILKKLGYFAVSSKKKAIKYLK 101
G N+ L AL+ + G+ V HG + R + ++L+ LG + ++ + ++
Sbjct: 18 GKGLM-NLSTLAALVAAAGGVAVAKHGNRAASSRAGSADLLEALGVDLEAPPERVGEAIE 76
Query: 102 LKRLVFMDISILIPELSKLLEIYYMLGIRNSSHLLVKIIQPLSIPALRLVSYTHPEYLKI 161
F+ + P + + + LG+R +LL + P + ++ PE+L
Sbjct: 77 ELGFGFLFARVFHPAMRHVAPVRAELGVRTVFNLLGPLTNP-AGADAYVLGVFSPEWLAP 135
Query: 162 LSDYFYNEKSLGDIFLMQGTEGEVIPNICNSKQIIHWFH 200
+++ + G + +G + V+ + +
Sbjct: 136 MAEALERLGARGLVVHGEGADELVLGENRVVEVGKGAYA 174
>d1o17a2 c.27.1.1 (A:71-343) Anthranilate phosphoribosyltransferase
(TrpD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 273
Score = 47.0 bits (111), Expect = 3e-06
Identities = 37/211 (17%), Positives = 75/211 (35%), Gaps = 6/211 (2%)
Query: 40 YNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYEILKKLGYFAVSSKKKAIKY 99
+G NV A+LLS PV HG + G+ + ++L+ LGY + ++A +
Sbjct: 12 GDGLGTV-NVSTASAILLSL-VNPVAKHGNRAVSGKSGSADVLEALGYNIIVPPERAKEL 69
Query: 100 LKLKRLVFMDISILIPELSKLLEIYYMLGIRNSSHLLVKIIQPLSIPALRLVSYTHPEYL 159
+ VF+ P + + + LGIR ++L + P + +L+ ++L
Sbjct: 70 VNKTNFVFLFAQYYHPAMKNVANVRKTLGIRTIFNILGPLTNPAN-AKYQLMGVFSKDHL 128
Query: 160 KILSDYFYNEKSLGDIFLMQGTEGEVIPNICNSKQIIHWFHDN--KYTKLTKEQNKEISF 217
+LS Y I L+ G G + + + + +
Sbjct: 129 DLLSKSAYELDF-NKIILVYGEPGIDEVSPIGNTFMKIVSKRGIEEVKLNVTDFGISPIP 187
Query: 218 PKNSNINDNVLWIQSVLDNKLPIPSTIINQV 248
+ +N ++ L + +
Sbjct: 188 IEKLIVNSAEDSAIKIVRAFLGKDEHVAEFI 218
>d1khda2 c.27.1.1 (A:81-344) Anthranilate phosphoribosyltransferase
(TrpD) {Pectobacterium carotovorum [TaxId: 554]}
Length = 264
Score = 38.7 bits (89), Expect = 0.001
Identities = 23/166 (13%), Positives = 54/166 (32%), Gaps = 6/166 (3%)
Query: 40 YNGSRRFMNVIPLLALLLSKKGIPVFIHGIK-KNFGRITTYEILKKLGYFAVSSKKKAIK 98
+G+ N+ A + + G V HG + + ++L+ G S + + +
Sbjct: 14 GDGTNSI-NISTASAFVAASCGAKVAKHGNRSVCQPLAGSCDLLQAFGIRLDMSAEDSRQ 72
Query: 99 YLKLKRLVFMDISILIPELSKLLEIYYMLGIRNSSHLLVKIIQPLSIPALRLVSYTHPEY 158
L + F+ + + L R ++L +I P + P L+ PE
Sbjct: 73 ALDDLNVCFLFAPQYHTGFRHAMPVRQQLKTRTIFNVLGPLINP-ARPPKALIGVYSPEL 131
Query: 159 LKILSDYFYNEKSLGDIFLMQGTEGEVIPNICNSKQIIHWFHDNKY 204
+ ++ + G I + + ++ +
Sbjct: 132 VLPIAQALKVLGYKNAAVVHG--GGMDEVAIH-TPTQVAELNNGEI 174
>d1o17a1 a.46.2.1 (A:1-70) Anthranilate phosphoribosyltransferase
(TrpD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 70
Score = 28.9 bits (65), Expect = 0.32
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 1 MRIKGESVEEISGFLNAINSLFIPLE 26
+R+KGES EI GF A+ L I ++
Sbjct: 45 LRMKGESKNEIVGFARAMRELAIKID 70
>d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase
(TrpD) {Pectobacterium carotovorum [TaxId: 554]}
Length = 69
Score = 27.4 bits (61), Expect = 1.3
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 1 MRIKGESVEEISGFLNAI 18
M+++GE EEI+G +A+
Sbjct: 44 MKMRGERPEEIAGAASAL 61
>d2ahua1 c.124.1.3 (A:283-529) Putative enzyme YdiF C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 247
Score = 28.4 bits (63), Expect = 3.0
Identities = 18/184 (9%), Positives = 43/184 (23%), Gaps = 27/184 (14%)
Query: 541 IGKRIASKEIT---IVDNGTLANRRGSINIDDEGNPTQCTTLIENGILKGYMQDIMNARL 597
+ +R E+ + + G + +EG +E G + G +
Sbjct: 9 VARRAL-FEMRKGAVGNVGVGIADGIGLVAREEGCADDFILTVETGPIGGITSQGIAFGA 67
Query: 598 MNMSITGNARRESFAHIPIPR---------------MTNTYMLNGKFHPE----EIISSV 638
+ F + NGK +I ++
Sbjct: 68 NVNTRAILDMTSQFDFYHGGGLDVCYLSFAEVDQHGNVGVHKFNGKIMGTGGFIDISATS 127
Query: 639 KNGLYATNFSGGQVDITNGKFVFSASKAYIIK-NGKITYPVKGATLIGHGPNILKKVSMI 697
K ++ + G + + + +K + + T G
Sbjct: 128 KKIIFCGTLTAGSLKTEIADGKLNIVQEGRVKKFIRELPEI---TFSGKIALERGLDVRY 184
Query: 698 GNDM 701
+
Sbjct: 185 ITER 188
>d1wh9a_ d.52.3.1 (A:) Ribosomal protein S3 N-terminal domain {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 92
Score = 26.6 bits (59), Expect = 3.2
Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Query: 355 TRSIANQSNGKIKIIKNIKKIKINSLYSFTDTISSINIREKIKLLERVEKIARLKDPRV- 413
TR +A +++ + +I L + T + R +L V+K + V
Sbjct: 17 TRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVE 76
Query: 414 --IKVIAN 419
+ +A
Sbjct: 77 LYAEKVAT 84
>d3b8oa1 d.58.60.1 (A:55-319) Lipopolysaccharide biosynthesis
protein WzzE {Escherichia coli [TaxId: 562]}
Length = 265
Score = 27.6 bits (61), Expect = 5.5
Identities = 7/51 (13%), Positives = 18/51 (35%)
Query: 334 KTAFFYSDDISKNTLINAVKSTRSIANQSNGKIKIIKNIKKIKINSLYSFT 384
+ F+ D K ++ K+ ++ ++ I+ I +N
Sbjct: 61 RREFWLQTDYYKQRMVGNSKADAALLDEMINNIQFIPGDFTRAVNDSVKLI 111
>d1coza_ c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltransferase
{Bacillus subtilis [TaxId: 1423]}
Length = 126
Score = 26.8 bits (58), Expect = 5.6
Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 333 DKTAFFYSDDISKNTLINAVKSTRSIANQSNGKIKIIKNIKKIKINSLYSFTDTISSINI 392
D+ + + K +I+ + + GK +K+ ++ T+ IS+ I
Sbjct: 66 DEVIPEKNWEQKKQDIIDHNIDVFVMGDDWEGKFDFLKDQCEVVYLP---RTEGISTTKI 122
Query: 393 REKI 396
+E+I
Sbjct: 123 KEEI 126
>d1uoua1 a.46.2.1 (A:33-100) Thymidine phosphorylase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 25.6 bits (56), Expect = 5.6
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 1 MRIKGESVEEISGFLNAI 18
+R++G +EE S A+
Sbjct: 46 IRLRGMDLEETSVLTQAL 63
>d2tpta1 a.46.2.1 (A:1-70) Thymidine phosphorylase {Escherichia
coli [TaxId: 562]}
Length = 70
Score = 25.5 bits (56), Expect = 6.0
Identities = 2/17 (11%), Positives = 5/17 (29%)
Query: 1 MRIKGESVEEISGFLNA 17
+ ++ E A
Sbjct: 46 IFFHDMTMPERVSLTMA 62
>d2ooka1 c.13.2.2 (A:2-126) Hypothetical protein Sfri0576
{Shewanella frigidimarina [TaxId: 56812]}
Length = 125
Score = 26.3 bits (58), Expect = 6.1
Identities = 7/61 (11%), Positives = 24/61 (39%), Gaps = 6/61 (9%)
Query: 368 IIKNIKKIKINSLYSFTD----TISSI--NIREKIKLLERVEKIARLKDPRVIKVIANLS 421
+ + + K++ T+ + + +++ +K E++A L + + A +
Sbjct: 43 ALSQVDQPKVSLFLDATELDGWDLRAAWDDLKLGLKHKSEFERVAILGNKDWQEWAAKIG 102
Query: 422 G 422
Sbjct: 103 S 103
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 27.6 bits (61), Expect = 6.2
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 95 KAIKYLKLKRLVFMDISILIPELSKLL-EIYYMLGIRNSSHLLVKII 140
+AI L+L++L ++ L+ E +LL +I +L I S+ L+++I
Sbjct: 427 QAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVI 473
>d1brwa1 a.46.2.1 (A:1-70) Pyrimidine nucleoside phosphorylase
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 70
Score = 25.5 bits (56), Expect = 6.7
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 1 MRIKGESVEEISGFLNAI 18
+ +G + EE + A+
Sbjct: 45 IYFRGMTEEETAALTMAM 62
>d2elca1 a.46.2.1 (A:1-52) Anthranilate phosphoribosyltransferase
(TrpD) {Thermus thermophilus [TaxId: 274]}
Length = 52
Score = 24.9 bits (55), Expect = 6.7
Identities = 4/11 (36%), Positives = 7/11 (63%)
Query: 1 MRIKGESVEEI 11
+ ++GE EI
Sbjct: 42 LSLRGERPHEI 52
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.139 0.399
Gapped
Lambda K H
0.267 0.0567 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,830,327
Number of extensions: 144299
Number of successful extensions: 389
Number of sequences better than 10.0: 1
Number of HSP's gapped: 382
Number of HSP's successfully gapped: 24
Length of query: 737
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 645
Effective length of database: 1,144,436
Effective search space: 738161220
Effective search space used: 738161220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.7 bits)