BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9404
(188 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DHK|A Chain A, Crystal Structure Of A Deoxycytidine Triphosphate
Deaminase (Dctp Deaminase) From Burkholderia
Thailandensis
pdb|4DHK|B Chain B, Crystal Structure Of A Deoxycytidine Triphosphate
Deaminase (Dctp Deaminase) From Burkholderia
Thailandensis
Length = 191
Score = 319 bits (817), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 150/188 (79%), Positives = 162/188 (86%), Gaps = 1/188 (0%)
Query: 1 MTIKSDNWIHNMAKYHGMIEPFVPHQVREI-NSRKIVSYGISSYGYDIRCANEFKIFTNI 59
M+IKSD WI MA+ H MIEPFVP QVR + R+IVSYG SSYGYDIRCA+EFKIFTNI
Sbjct: 3 MSIKSDKWIRRMAEEHKMIEPFVPDQVRAAEDGRRIVSYGTSSYGYDIRCADEFKIFTNI 62
Query: 60 NSTIIDPKNFDNKLFVDFVGDVCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYARCGI 119
NSTI+DPKNFD FVDF GDVCIIPPNSF LART+EYFRIPR +LT+C+GKSTYARCGI
Sbjct: 63 NSTIVDPKNFDEGSFVDFKGDVCIIPPNSFALARTVEYFRIPRTVLTVCLGKSTYARCGI 122
Query: 120 IVNVTPFEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVLFFESDETCKTSYKDRNGKYQG 179
IVNVTPFEPEWEGYVTLEFSNTTPLPAKIY+ EG AQVLFFESDE C SY DR GKYQG
Sbjct: 123 IVNVTPFEPEWEGYVTLEFSNTTPLPAKIYANEGVAQVLFFESDEVCDVSYADRGGKYQG 182
Query: 180 QTGINLPK 187
Q G+ LPK
Sbjct: 183 QRGVTLPK 190
>pdb|3KM3|A Chain A, Crystal Structure Of Eoxycytidine Triphosphate Deaminase
From Anaplasma Phagocytophilum At 2.1a Resolution
pdb|3KM3|B Chain B, Crystal Structure Of Eoxycytidine Triphosphate Deaminase
From Anaplasma Phagocytophilum At 2.1a Resolution
Length = 206
Score = 237 bits (604), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 108/188 (57%), Positives = 133/188 (70%), Gaps = 4/188 (2%)
Query: 1 MTIKSDNWIHNMAKYHGMIEPFVPHQVREINSRKIVSYGISSYGYDIRCANEFKIFTNIN 60
M++ D+WI A GMI PFV H+ ++SYG+SSYGYD R N+FKIF N +
Sbjct: 22 MSVMPDHWIKERALKDGMISPFVDHK----EGTGVLSYGLSSYGYDARLDNKFKIFANTH 77
Query: 61 STIIDPKNFDNKLFVDFVGDVCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYARCGII 120
S ++DPKNF FVD GD CIIPPNSF+LA+T+EYF IPR ++ +C+GKSTYARCGI+
Sbjct: 78 SVVVDPKNFSQDSFVDREGDFCIIPPNSFMLAKTVEYFNIPRDVMVVCVGKSTYARCGIV 137
Query: 121 VNVTPFEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVLFFESDETCKTSYKDRNGKYQGQ 180
VNVTP EP W GYVTLEFSNT+PLP K+Y+ EG Q LFF E C SY + GKY GQ
Sbjct: 138 VNVTPLEPGWSGYVTLEFSNTSPLPVKVYAFEGACQFLFFSGKERCSKSYDEAGGKYMGQ 197
Query: 181 TGINLPKI 188
+ + LP I
Sbjct: 198 SDVTLPII 205
>pdb|2QXX|A Chain A, Bifunctional Dctp Deaminase: Dutpase From Mycobacterium
Tuberculosis In Complex With Dttp
pdb|2QXX|B Chain B, Bifunctional Dctp Deaminase: Dutpase From Mycobacterium
Tuberculosis In Complex With Dttp
Length = 190
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 69/144 (47%), Gaps = 7/144 (4%)
Query: 46 DIRCANEFKIFTNINSTIIDPKNFDNKL--FVDFV-GDVCIIPPNSFVLARTIEYFRIPR 102
D+R F++F N T IDP ++L V V G+ ++ P FVL T+E F +P
Sbjct: 33 DVRLDCLFRVFNNTRYTHIDPAKQQDELTSLVQPVDGEPFVLHPGEFVLGSTLELFTLPD 92
Query: 103 KILTMCIGKSTYARCGIIVNVTP--FEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVLFF 160
+ GKS+ R G++ + T +P + G++TLE SN LP ++ Q+
Sbjct: 93 NLAGRLEGKSSLGRLGLLTHSTAGFIDPGFSGHITLELSNVANLPITLWPGMKIGQLCML 152
Query: 161 ESDETCKTSY-KDRNG-KYQGQTG 182
+ Y R G KYQGQ G
Sbjct: 153 RLTSPSEHPYGSSRAGSKYQGQRG 176
>pdb|4A6A|A Chain A, A115v Variant Of Dctp Deaminase-Dutpase From Mycobacterium
Tuberculosis In Complex With Dttp
pdb|4A6A|B Chain B, A115v Variant Of Dctp Deaminase-Dutpase From Mycobacterium
Tuberculosis In Complex With Dttp
pdb|4A6A|C Chain C, A115v Variant Of Dctp Deaminase-Dutpase From Mycobacterium
Tuberculosis In Complex With Dttp
pdb|4A6A|D Chain D, A115v Variant Of Dctp Deaminase-Dutpase From Mycobacterium
Tuberculosis In Complex With Dttp
pdb|4A6A|E Chain E, A115v Variant Of Dctp Deaminase-Dutpase From Mycobacterium
Tuberculosis In Complex With Dttp
pdb|4A6A|F Chain F, A115v Variant Of Dctp Deaminase-Dutpase From Mycobacterium
Tuberculosis In Complex With Dttp
pdb|4A6A|G Chain G, A115v Variant Of Dctp Deaminase-Dutpase From Mycobacterium
Tuberculosis In Complex With Dttp
pdb|4A6A|H Chain H, A115v Variant Of Dctp Deaminase-Dutpase From Mycobacterium
Tuberculosis In Complex With Dttp
pdb|4A6A|I Chain I, A115v Variant Of Dctp Deaminase-Dutpase From Mycobacterium
Tuberculosis In Complex With Dttp
pdb|4A6A|J Chain J, A115v Variant Of Dctp Deaminase-Dutpase From Mycobacterium
Tuberculosis In Complex With Dttp
pdb|4A6A|K Chain K, A115v Variant Of Dctp Deaminase-Dutpase From Mycobacterium
Tuberculosis In Complex With Dttp
pdb|4A6A|L Chain L, A115v Variant Of Dctp Deaminase-Dutpase From Mycobacterium
Tuberculosis In Complex With Dttp
Length = 190
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 69/144 (47%), Gaps = 7/144 (4%)
Query: 46 DIRCANEFKIFTNINSTIIDPKNFDNKL--FVDFV-GDVCIIPPNSFVLARTIEYFRIPR 102
D+R F++F N T IDP ++L V V G+ ++ P FVL T+E F +P
Sbjct: 33 DVRLDCLFRVFNNTRYTHIDPAKQQDELTSLVQPVDGEPFVLHPGEFVLGSTLELFTLPD 92
Query: 103 KILTMCIGKSTYARCGIIVNVTP--FEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVLFF 160
+ GKS+ R G++ + T +P + G++TLE SN LP ++ Q+
Sbjct: 93 NLAGRLEGKSSLGRLGLLTHSTVGFIDPGFSGHITLELSNVANLPITLWPGMKIGQLCML 152
Query: 161 ESDETCKTSY-KDRNG-KYQGQTG 182
+ Y R G KYQGQ G
Sbjct: 153 RLTSPSEHPYGSSRAGSKYQGQRG 176
>pdb|2QLP|A Chain A, Bifunctional Dctp Deaminase:dutpase From Mycobacterium
Tuberculosis, Apo Form
pdb|2QLP|B Chain B, Bifunctional Dctp Deaminase:dutpase From Mycobacterium
Tuberculosis, Apo Form
pdb|2QLP|C Chain C, Bifunctional Dctp Deaminase:dutpase From Mycobacterium
Tuberculosis, Apo Form
pdb|2QLP|D Chain D, Bifunctional Dctp Deaminase:dutpase From Mycobacterium
Tuberculosis, Apo Form
pdb|2QLP|E Chain E, Bifunctional Dctp Deaminase:dutpase From Mycobacterium
Tuberculosis, Apo Form
pdb|2QLP|F Chain F, Bifunctional Dctp Deaminase:dutpase From Mycobacterium
Tuberculosis, Apo Form
Length = 161
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 5/117 (4%)
Query: 46 DIRCANEFKIFTNINSTIIDPKNFDNKL--FVDFV-GDVCIIPPNSFVLARTIEYFRIPR 102
D+R F++F N T IDP ++L V V G+ ++ P FVL T+E F +P
Sbjct: 33 DVRLDCLFRVFNNTRYTHIDPAKQQDELTSLVQPVDGEPFVLHPGEFVLGSTLELFTLPD 92
Query: 103 KILTMCIGKSTYARCGIIVNVTP--FEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQV 157
+ GKS+ R G++ + T +P + G++TLE SN LP ++ Q+
Sbjct: 93 NLAGRLEGKSSLGRLGLLTHSTAGFIDPGFSGHITLELSNVANLPITLWPGMKIGQL 149
>pdb|1XS1|A Chain A, Dctp Deaminase From Escherichia Coli In Complex With Dutp
pdb|1XS1|B Chain B, Dctp Deaminase From Escherichia Coli In Complex With Dutp
pdb|1XS1|C Chain C, Dctp Deaminase From Escherichia Coli In Complex With Dutp
pdb|1XS1|D Chain D, Dctp Deaminase From Escherichia Coli In Complex With Dutp
pdb|1XS1|E Chain E, Dctp Deaminase From Escherichia Coli In Complex With Dutp
pdb|1XS1|F Chain F, Dctp Deaminase From Escherichia Coli In Complex With Dutp
Length = 193
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 81/185 (43%), Gaps = 17/185 (9%)
Query: 19 IEPFVPHQVREINSRKIVSYGISSYGYDIRCANEFKIFTNINSTIID---PKN-----FD 70
IE ++ IN R V I+ D+R N+F+ F + ID PK+ D
Sbjct: 8 IEAWLDEGRLSINPRPPVER-INGATVDVRLGNKFRTFRGHTAAFIDLSGPKDEVSAALD 66
Query: 71 NKLFVDFV---GDVCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYARCGIIVNVTP-- 125
+ + V G+ + P LA T+E +P ++ G+S+ AR G++V+VT
Sbjct: 67 RVMSDEIVLDEGEAFYLHPGELALAVTLESVTLPADLVGWLDGRSSLARLGLMVHVTAHR 126
Query: 126 FEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVLFFE--SDETCKTSYKDRNGKYQGQTGI 183
+P W G + LEF N+ LP + L FE S + + + KY+ Q G
Sbjct: 127 IDPGWSGCIVLEFYNSGKLPLALRPGM-LIGALSFEPLSGPAVRPYNRREDAKYRNQQGA 185
Query: 184 NLPKI 188
+I
Sbjct: 186 VASRI 190
>pdb|2J4H|A Chain A, Crystal Structure Of A H121a Escherichia Coli Dctp
Deaminase Mutant Enzyme
pdb|2J4H|B Chain B, Crystal Structure Of A H121a Escherichia Coli Dctp
Deaminase Mutant Enzyme
Length = 193
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 80/185 (43%), Gaps = 17/185 (9%)
Query: 19 IEPFVPHQVREINSRKIVSYGISSYGYDIRCANEFKIFTNINSTIID---PKN-----FD 70
IE ++ IN R V I+ D+R N+F+ F + ID PK+ D
Sbjct: 8 IEAWLDEGRLSINPRPPVER-INGATVDVRLGNKFRTFRGHTAAFIDLSGPKDEVSAALD 66
Query: 71 NKLFVDFV---GDVCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYARCGIIVNVTP-- 125
+ + V G+ + P LA T+E +P ++ G+S+ AR G++V VT
Sbjct: 67 RVMSDEIVLDEGEAFYLHPGELALAVTLESVTLPADLVGWLDGRSSLARLGLMVAVTAHR 126
Query: 126 FEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVLFFE--SDETCKTSYKDRNGKYQGQTGI 183
+P W G + LEF N+ LP + L FE S + + + KY+ Q G
Sbjct: 127 IDPGWSGCIVLEFYNSGKLPLALRPGM-LIGALSFEPLSGPAVRPYNRREDAKYRNQQGA 185
Query: 184 NLPKI 188
+I
Sbjct: 186 VASRI 190
>pdb|2V9X|A Chain A, E138d Variant Of Escherichia Coli Dctp Deaminase In
Complex With Dutp
pdb|2V9X|B Chain B, E138d Variant Of Escherichia Coli Dctp Deaminase In
Complex With Dutp
pdb|2V9X|C Chain C, E138d Variant Of Escherichia Coli Dctp Deaminase In
Complex With Dutp
pdb|2V9X|D Chain D, E138d Variant Of Escherichia Coli Dctp Deaminase In
Complex With Dutp
pdb|2V9X|E Chain E, E138d Variant Of Escherichia Coli Dctp Deaminase In
Complex With Dutp
pdb|2V9X|F Chain F, E138d Variant Of Escherichia Coli Dctp Deaminase In
Complex With Dutp
pdb|2V9X|G Chain G, E138d Variant Of Escherichia Coli Dctp Deaminase In
Complex With Dutp
pdb|2V9X|H Chain H, E138d Variant Of Escherichia Coli Dctp Deaminase In
Complex With Dutp
pdb|2V9X|I Chain I, E138d Variant Of Escherichia Coli Dctp Deaminase In
Complex With Dutp
pdb|2V9X|J Chain J, E138d Variant Of Escherichia Coli Dctp Deaminase In
Complex With Dutp
pdb|2V9X|K Chain K, E138d Variant Of Escherichia Coli Dctp Deaminase In
Complex With Dutp
pdb|2V9X|L Chain L, E138d Variant Of Escherichia Coli Dctp Deaminase In
Complex With Dutp
Length = 193
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 81/185 (43%), Gaps = 17/185 (9%)
Query: 19 IEPFVPHQVREINSRKIVSYGISSYGYDIRCANEFKIFTNINSTIID---PKN-----FD 70
IE ++ IN R V I+ D+R N+F+ F + ID PK+ D
Sbjct: 8 IEAWLDEGRLSINPRPPVER-INGATVDVRLGNKFRTFRGHTAAFIDLSGPKDEVSAALD 66
Query: 71 NKLFVDFV---GDVCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYARCGIIVNVTP-- 125
+ + V G+ + P LA T+E +P ++ G+S+ AR G++V+VT
Sbjct: 67 RVMSDEIVLDEGEAFYLHPGELALAVTLESVTLPADLVGWLDGRSSLARLGLMVHVTAHR 126
Query: 126 FEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVLFFE--SDETCKTSYKDRNGKYQGQTGI 183
+P W G + L+F N+ LP + L FE S + + + KY+ Q G
Sbjct: 127 IDPGWSGCIVLDFYNSGKLPLALRPGM-LIGALSFEPLSGPAVRPYNRREDAKYRNQQGA 185
Query: 184 NLPKI 188
+I
Sbjct: 186 VASRI 190
>pdb|1XS6|A Chain A, Dctp Deaminase From Escherichia Coli. E138a Mutant Enzyme
In Complex With Dutp
pdb|1XS6|B Chain B, Dctp Deaminase From Escherichia Coli. E138a Mutant Enzyme
In Complex With Dutp
pdb|1XS6|C Chain C, Dctp Deaminase From Escherichia Coli. E138a Mutant Enzyme
In Complex With Dutp
pdb|1XS6|D Chain D, Dctp Deaminase From Escherichia Coli. E138a Mutant Enzyme
In Complex With Dutp
pdb|1XS6|E Chain E, Dctp Deaminase From Escherichia Coli. E138a Mutant Enzyme
In Complex With Dutp
pdb|1XS6|F Chain F, Dctp Deaminase From Escherichia Coli. E138a Mutant Enzyme
In Complex With Dutp
pdb|2J4Q|A Chain A, Crystal Structure Of A E138a Escherichia Coli Dctp
Deaminase Mutant Enzyme In Complex With Dttp
pdb|2J4Q|B Chain B, Crystal Structure Of A E138a Escherichia Coli Dctp
Deaminase Mutant Enzyme In Complex With Dttp
Length = 193
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 80/185 (43%), Gaps = 17/185 (9%)
Query: 19 IEPFVPHQVREINSRKIVSYGISSYGYDIRCANEFKIFTNINSTIID---PKN-----FD 70
IE ++ IN R V I+ D+R N+F+ F + ID PK+ D
Sbjct: 8 IEAWLDEGRLSINPRPPVER-INGATVDVRLGNKFRTFRGHTAAFIDLSGPKDEVSAALD 66
Query: 71 NKLFVDFV---GDVCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYARCGIIVNVTP-- 125
+ + V G+ + P LA T+E +P ++ G+S+ AR G++V+VT
Sbjct: 67 RVMSDEIVLDEGEAFYLHPGELALAVTLESVTLPADLVGWLDGRSSLARLGLMVHVTAHR 126
Query: 126 FEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVLFFE--SDETCKTSYKDRNGKYQGQTGI 183
+P W G + L F N+ LP + L FE S + + + KY+ Q G
Sbjct: 127 IDPGWSGCIVLAFYNSGKLPLALRPGM-LIGALSFEPLSGPAVRPYNRREDAKYRNQQGA 185
Query: 184 NLPKI 188
+I
Sbjct: 186 VASRI 190
>pdb|1XS4|A Chain A, Dctp Deaminase From Escherichia Coli- E138a Mutant Enzyme
In Complex With Dctp
pdb|1XS4|B Chain B, Dctp Deaminase From Escherichia Coli- E138a Mutant Enzyme
In Complex With Dctp
pdb|1XS4|C Chain C, Dctp Deaminase From Escherichia Coli- E138a Mutant Enzyme
In Complex With Dctp
pdb|1XS4|D Chain D, Dctp Deaminase From Escherichia Coli- E138a Mutant Enzyme
In Complex With Dctp
pdb|1XS4|E Chain E, Dctp Deaminase From Escherichia Coli- E138a Mutant Enzyme
In Complex With Dctp
pdb|1XS4|F Chain F, Dctp Deaminase From Escherichia Coli- E138a Mutant Enzyme
In Complex With Dctp
Length = 193
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 80/186 (43%), Gaps = 19/186 (10%)
Query: 19 IEPFVPHQVREINSRKIVSYGISSYGYDIRCANEFKIFTNINSTIID---PKN------- 68
IE ++ IN R V I+ D+R N+F+ F + ID PK+
Sbjct: 8 IEAWLDEGRLSINPRPPVER-INGATVDVRLGNKFRTFRGHTAAFIDLSGPKDEVSAALD 66
Query: 69 --FDNKLFVDFVGDVCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYARCGIIVNVTP- 125
+++ +D G+ + P LA T+E +P ++ G+S+ AR G+ V+VT
Sbjct: 67 RVXSDEIVLD-EGEAFYLHPGELALAVTLESVTLPADLVGWLDGRSSLARLGLXVHVTAH 125
Query: 126 -FEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVLFFE--SDETCKTSYKDRNGKYQGQTG 182
+P W G + L F N+ LP + L FE S + + + KY+ Q G
Sbjct: 126 RIDPGWSGCIVLAFYNSGKLPLALRPGX-LIGALSFEPLSGPAVRPYNRREDAKYRNQQG 184
Query: 183 INLPKI 188
+I
Sbjct: 185 AVASRI 190
>pdb|1FST|A Chain A, Crystal Structure Of Truncated Human Rhogdi Triple Mutant
pdb|1FST|B Chain B, Crystal Structure Of Truncated Human Rhogdi Triple Mutant
Length = 182
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 73 LFVDFVGDVCIIPPNSFVLARTIEY-----FRIPRKILT-MCIGKSTYARCGIIVNVTPF 126
L +D GD+ SFVL +EY FR+ R+I++ M + TY R G+ ++ T +
Sbjct: 64 LELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTY-RAGVAIDATDY 122
>pdb|1FSO|A Chain A, Crystal Structure Of Truncated Human Rhogdi Quadruple
Mutant
Length = 139
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 73 LFVDFVGDVCIIPPNSFVLARTIEY-----FRIPRKILT-MCIGKSTYARCGIIVNVTPF 126
L +D GD+ SFVL +EY FR+ R+I++ M + TY R G+ ++ T +
Sbjct: 21 LELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTY-RAGVAIDATDY 79
>pdb|2JHT|A Chain A, Crystal Structure Of Rhogdi K135t,K138t,K141t Mutant
pdb|2JHT|B Chain B, Crystal Structure Of Rhogdi K135t,K138t,K141t Mutant
pdb|2JHT|C Chain C, Crystal Structure Of Rhogdi K135t,K138t,K141t Mutant
pdb|2JHT|D Chain D, Crystal Structure Of Rhogdi K135t,K138t,K141t Mutant
Length = 138
Score = 30.4 bits (67), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 73 LFVDFVGDVCIIPPNSFVLARTIEY-----FRIPRKILT-MCIGKSTYARCGIIVNVTPF 126
L +D GD+ SFVL +EY FR+ R+I++ M + TY R G+ ++ T +
Sbjct: 22 LELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTY-RTGVTIDTTDY 80
>pdb|4F38|B Chain B, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 204
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 73 LFVDFVGDVCIIPPNSFVLARTIEY-----FRIPRKILT-MCIGKSTYARCGIIVNVTPF 126
L +D GD+ SFVL +EY FR+ R+I++ M + TY R G+ ++ T +
Sbjct: 86 LELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTY-RKGVKIDKTDY 144
>pdb|1DOA|B Chain B, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 219
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 73 LFVDFVGDVCIIPPNSFVLARTIEY-----FRIPRKILT-MCIGKSTYARCGIIVNVTPF 126
L +D GD+ SFVL +EY FR+ R+I++ M + TY R G+ ++ T +
Sbjct: 101 LELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTY-RKGVKIDKTDY 159
>pdb|1OGH|A Chain A, Structure Of The Bifunctional Dctp Deaminase-Dutpase From
Methanocaldococcus Jannaschii
pdb|1OGH|B Chain B, Structure Of The Bifunctional Dctp Deaminase-Dutpase From
Methanocaldococcus Jannaschii
pdb|1PKH|A Chain A, Structural Basis For Recognition And Catalysis By The
Bifunctional Dctp Deaminase And Dutpase From
Methanococcus Jannaschii
pdb|1PKH|B Chain B, Structural Basis For Recognition And Catalysis By The
Bifunctional Dctp Deaminase And Dutpase From
Methanococcus Jannaschii
pdb|1PKJ|A Chain A, Structural Basis For Recognition And Catalysis By The
Bifunctional Dctp Deaminase And Dutpase From
Methanococcus Jannaschii
pdb|1PKJ|B Chain B, Structural Basis For Recognition And Catalysis By The
Bifunctional Dctp Deaminase And Dutpase From
Methanococcus Jannaschii
pdb|1PKK|A Chain A, Structural Basis For Recognition And Catalysis By The
Bifunctional Dctp Deaminase And Dutpase From
Methanococcus Jannaschii
pdb|1PKK|B Chain B, Structural Basis For Recognition And Catalysis By The
Bifunctional Dctp Deaminase And Dutpase From
Methanococcus Jannaschii
pdb|2HXB|A Chain A, Dctp Deaminase-Dutpase From Methanocaldococcus Jannaschii
Length = 204
Score = 30.0 bits (66), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
Query: 90 VLARTIEYFRIPRKILTMCIGKSTYARCGIIVNVTP--FEPEWEGYVTLEFSNTTPLPAK 147
VL T EY +P I G+S+ R + + T + ++G +TLE P
Sbjct: 96 VLGTTNEYIELPNDISAQYQGRSSLGRVFLTSHQTAGWIDAGFKGKITLEIVAFDK-PVI 154
Query: 148 IYSEEGCAQVLFFESDETCKTSYKDRN-GKYQGQTGI 183
+Y + Q++F + Y +R KY Q +
Sbjct: 155 LYKNQRIGQLIFSKLLSPADVGYSERKTSKYAYQKSV 191
>pdb|1FT3|A Chain A, Crystal Structure Of Truncated Rhogdi K141a Mutant
pdb|1FT3|B Chain B, Crystal Structure Of Truncated Rhogdi K141a Mutant
Length = 139
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 73 LFVDFVGDVCIIPPNSFVLARTIEY-----FRIPRKILT-MCIGKSTYARCGIIVNVTPF 126
L +D GD+ SFVL +EY FR+ R+I++ M + TY R G+ ++ T +
Sbjct: 21 LELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTY-RKGVKIDATDY 79
>pdb|1WXD|A Chain A, Crystal Structure Of Shikimate 5-dehydrogenase (aroe) From
Thermus Thermophilus Hb8
pdb|1WXD|B Chain B, Crystal Structure Of Shikimate 5-dehydrogenase (aroe) From
Thermus Thermophilus Hb8
pdb|2CY0|A Chain A, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Nadp
pdb|2CY0|B Chain B, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Nadp
pdb|2D5C|A Chain A, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Shikimate
pdb|2D5C|B Chain B, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Shikimate
pdb|2EV9|A Chain A, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Nadp(H) And
Shikimate
pdb|2EV9|B Chain B, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Nadp(H) And
Shikimate
Length = 263
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 19/68 (27%)
Query: 97 YFRIPRKILTMC---------IGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPAK 147
+ R P++ L + + K+ AR ++VN T V LE + +PLPA+
Sbjct: 145 WNRTPQRALALAEEFGLRAVPLEKAREAR--LLVNAT--------RVGLEDPSASPLPAE 194
Query: 148 IYSEEGCA 155
++ EEG A
Sbjct: 195 LFPEEGAA 202
>pdb|2BXW|A Chain A, Crystal Structure Of Rhogdi Lys(135,138,141)tyr Mutant
pdb|2BXW|B Chain B, Crystal Structure Of Rhogdi Lys(135,138,141)tyr Mutant
Length = 141
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 73 LFVDFVGDVCIIPPNSFVLARTIEY-----FRIPRKILT-MCIGKSTYARCGIIVNVTPF 126
L +D GD+ SFVL +EY FR+ R+I++ M + TY R G+ ++ T +
Sbjct: 23 LELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTY-RYGVYIDYTDY 81
>pdb|1AJW|A Chain A, Structure Of Rhogdi: A C-Terminal Binding Domain Targets
An N-Terminal Inhibitory Peptide To Gtpases, Nmr, 20
Structures
pdb|1GDF|A Chain A, Structure Of Rhogdi: A C-Terminal Binding Domain Targets
An N-Terminal Inhibitory Peptide To Gtpases, Nmr,
Minimized Average Structure
Length = 145
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 73 LFVDFVGDVCIIPPNSFVLARTIEY-----FRIPRKILT-MCIGKSTYARCGIIVNVTPF 126
L +D GD+ SFVL +EY FR+ R+I++ M + TY R G+ ++ T +
Sbjct: 27 LELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTY-RKGVKIDKTDY 85
Query: 127 EPEWEGYVTLEFSNTTPL 144
G E+ TP+
Sbjct: 86 MVGSYGPRAEEYEFLTPM 103
>pdb|3GF0|A Chain A, Bifunctional Dctp Deaminase-Dutpase Mutant Enzyme Variant
E145q From Methanocaldococcus Jannaschii In Complex With
Pyrophosphate And Magnesium
Length = 204
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
Query: 90 VLARTIEYFRIPRKILTMCIGKSTYARCGIIVNVTP--FEPEWEGYVTLEFSNTTPLPAK 147
VL T EY +P I G+S+ R + + T + ++G +TL+ P
Sbjct: 96 VLGTTNEYIELPNDISAQYQGRSSLGRVFLTSHQTAGWIDAGFKGKITLQIVAFDK-PVI 154
Query: 148 IYSEEGCAQVLFFESDETCKTSYKDRN-GKYQGQTGI 183
+Y + Q++F + Y +R KY Q +
Sbjct: 155 LYKNQRIGQLIFSKLLSPADVGYSERKTSKYAYQKSV 191
>pdb|2JI0|A Chain A, Crystal Structure Of Rhogdi K138y, K141y Mutant
Length = 138
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 73 LFVDFVGDVCIIPPNSFVLARTIEY-----FRIPRKILT-MCIGKSTYARCGIIVNVTPF 126
L +D GD+ SFVL +EY FR+ R+I++ M + TY R G+ ++ T +
Sbjct: 22 LELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTY-RKGVYIDYTDY 80
>pdb|2HXD|A Chain A, Bifunctional Dctp Deaminase-Dutpase Mutant Enzyme Variant
E145a From Methanocaldococcus Jannaschii In Complex With
Alpha,Beta-Imido Dutp And Magnesium
Length = 204
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 4/97 (4%)
Query: 90 VLARTIEYFRIPRKILTMCIGKSTYARCGIIVNVTP--FEPEWEGYVTLEFSNTTPLPAK 147
VL T EY +P I G+S+ R + + T + ++G +TL P
Sbjct: 96 VLGTTNEYIELPNDISAQYQGRSSLGRVFLTSHQTAGWIDAGFKGKITLAIVAFDK-PVI 154
Query: 148 IYSEEGCAQVLFFESDETCKTSYKDRN-GKYQGQTGI 183
+Y + Q++F + Y +R KY Q +
Sbjct: 155 LYKNQRIGQLIFSKLLSPADVGYSERKTSKYAYQKSV 191
>pdb|1DUC|A Chain A, Eiav Dutpase DudpSTRONTIUM COMPLEX
pdb|1DUN|A Chain A, Eiav Dutpase Native
Length = 134
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/114 (19%), Positives = 47/114 (41%), Gaps = 10/114 (8%)
Query: 80 DVCI-----IPPNSFVLARTIEYFRIPRKILTMCIGKSTYARCGIIVNVTPFEPEWEGYV 134
D+C+ IP + + T ++P GKS+ A+ G+++N + + G +
Sbjct: 20 DLCVPYDIMIPVSDTKIIPTDVKIQVPPNSFGWVTGKSSMAKQGLLINGGIIDEGYTGEI 79
Query: 135 TLEFSNTTPLPAKIYSEEGCAQVLFFESDETCKTSYKD-----RNGKYQGQTGI 183
+ +N K+ + AQ++ + + + + R K G TG+
Sbjct: 80 QVICTNIGKSNIKLIEGQKFAQLIILQHHSNSRQPWDENKISQRGDKGFGSTGV 133
>pdb|3QQY|A Chain A, Crystal Structure Of A Novel Laglidadg Homing
Endonuclease, I-Onui (From Ophiostoma Novo-Ulmi Subsp.
Americana)
Length = 307
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 30/72 (41%)
Query: 113 TYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVLFFESDETCKTSYKD 172
TY CG I E W +V +FS+ ++ E V + ++ CK +
Sbjct: 221 TYLGCGYIKEKNKSEFSWLDFVVTKFSDINDKIIPVFQENTLIGVKLEDFEDWCKVAKLI 280
Query: 173 RNGKYQGQTGIN 184
K+ ++G++
Sbjct: 281 EEKKHLTESGLD 292
>pdb|1QHO|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, MaltoseACARBOSE COMPLEX
pdb|1QHP|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, Maltose Complex
Length = 686
Score = 26.9 bits (58), Expect = 7.4, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 12/76 (15%)
Query: 2 TIKSDNWIHNMAKYHGMIEPFVPHQVREINSRKIVSYGISS--YGYDIRCANEFKIFTNI 59
T+KS W N IE +VP+ + K+ + G+SS Y Y+I + + +
Sbjct: 537 TVKS--WTSNR------IEVYVPNMAAGLTDVKVTAGGVSSNLYSYNILSGTQTSVVFTV 588
Query: 60 NSTIIDPKNFDNKLFV 75
S P N +K+++
Sbjct: 589 KSA--PPTNLGDKIYL 602
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,991,039
Number of Sequences: 62578
Number of extensions: 245764
Number of successful extensions: 382
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 358
Number of HSP's gapped (non-prelim): 26
length of query: 188
length of database: 14,973,337
effective HSP length: 93
effective length of query: 95
effective length of database: 9,153,583
effective search space: 869590385
effective search space used: 869590385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)