Query psy9404
Match_columns 188
No_of_seqs 144 out of 1626
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 18:20:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9404.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9404hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00416 dcd deoxycytidine tri 100.0 3.4E-51 7.3E-56 328.6 20.4 176 2-188 1-177 (177)
2 COG0717 Dcd Deoxycytidine deam 100.0 5.1E-51 1.1E-55 327.9 20.2 174 2-188 1-181 (183)
3 PHA01707 dut 2'-deoxyuridine 5 100.0 3.5E-50 7.6E-55 317.4 18.8 156 2-188 1-157 (158)
4 TIGR02274 dCTP_deam deoxycytid 100.0 4.6E-49 9.9E-54 316.7 20.3 173 3-188 1-179 (179)
5 PRK02253 deoxyuridine 5'-triph 100.0 3.5E-42 7.6E-47 274.1 17.7 159 2-181 1-166 (167)
6 PRK07559 2'-deoxycytidine 5'-t 100.0 2.4E-38 5.2E-43 277.6 18.7 170 2-188 171-361 (365)
7 PRK07559 2'-deoxycytidine 5'-t 100.0 9.4E-38 2E-42 273.9 17.1 148 1-164 8-171 (365)
8 PF06559 DCD: 2'-deoxycytidine 100.0 1.9E-30 4.1E-35 222.7 15.6 146 2-164 8-170 (364)
9 cd07557 trimeric_dUTPase Trime 99.9 6.1E-27 1.3E-31 168.3 12.1 79 81-159 13-92 (92)
10 PF00692 dUTPase: dUTPase; In 99.9 2.5E-25 5.4E-30 169.5 13.5 105 81-185 23-127 (129)
11 PHA03094 dUTPase; Provisional 99.9 2.3E-24 5E-29 167.9 13.6 86 81-166 35-121 (144)
12 TIGR00576 dut deoxyuridine 5'- 99.9 1.8E-23 4E-28 162.3 12.3 83 82-164 31-116 (141)
13 PHA02703 ORF007 dUTPase; Provi 99.9 3E-23 6.6E-28 164.8 12.9 85 81-165 43-128 (165)
14 PLN02547 dUTP pyrophosphatase 99.9 1.1E-22 2.4E-27 160.5 13.7 85 81-165 46-131 (157)
15 PRK13956 dut deoxyuridine 5'-t 99.9 6.6E-23 1.4E-27 160.0 11.4 84 81-164 36-128 (147)
16 PRK00601 dut deoxyuridine 5'-t 99.9 2.8E-22 6E-27 157.2 12.3 85 81-165 39-126 (150)
17 PTZ00143 deoxyuridine 5'-triph 99.9 3.7E-21 8.1E-26 151.3 11.8 84 81-164 36-130 (155)
18 COG0756 Dut dUTPase [Nucleotid 99.9 7E-21 1.5E-25 147.5 11.7 84 82-165 38-124 (148)
19 PHA03131 dUTPase; Provisional 99.7 1E-17 2.2E-22 143.5 11.3 84 80-166 141-225 (286)
20 PHA03123 dUTPase; Provisional 99.7 3.3E-17 7.1E-22 143.2 11.1 84 80-165 253-339 (402)
21 PF06559 DCD: 2'-deoxycytidine 99.7 1.3E-15 2.7E-20 131.6 17.5 170 2-187 170-360 (364)
22 PHA03124 dUTPase; Provisional 99.7 2.4E-16 5.1E-21 137.4 11.9 79 81-162 300-379 (418)
23 PHA03126 dUTPase; Provisional 99.7 3.3E-16 7.2E-21 134.5 10.4 84 80-165 186-270 (326)
24 PHA03131 dUTPase; Provisional 99.6 5E-15 1.1E-19 126.9 13.5 102 79-183 33-135 (286)
25 PHA03130 dUTPase; Provisional 99.6 4.8E-15 1E-19 128.1 10.3 82 80-164 222-306 (368)
26 PHA03127 dUTPase; Provisional 99.6 1E-14 2.2E-19 126.0 9.5 81 80-162 183-264 (322)
27 PHA03129 dUTPase; Provisional 99.5 6E-14 1.3E-18 124.5 11.6 82 80-163 296-378 (436)
28 KOG3370|consensus 99.5 1.7E-13 3.7E-18 104.4 7.1 84 82-165 33-117 (140)
29 PHA03129 dUTPase; Provisional 99.5 2.9E-13 6.4E-18 120.1 9.2 74 89-165 77-156 (436)
30 PHA03128 dUTPase; Provisional 99.0 1.6E-09 3.5E-14 94.3 10.6 81 79-162 217-298 (376)
31 PHA03127 dUTPase; Provisional 98.9 6.1E-09 1.3E-13 90.3 9.1 74 89-163 63-138 (322)
32 PHA03125 dUTPase; Provisional 98.8 5.2E-08 1.1E-12 84.8 12.1 82 78-162 260-342 (376)
33 PHA03128 dUTPase; Provisional 98.2 1.4E-05 3.1E-10 70.0 10.4 84 79-165 112-195 (376)
34 PHA03125 dUTPase; Provisional 97.9 9.7E-05 2.1E-09 64.7 10.4 83 79-165 158-240 (376)
35 PHA03126 dUTPase; Provisional 97.6 0.00072 1.6E-08 58.9 10.8 80 90-170 54-150 (326)
36 PF04797 Herpes_ORF11: Herpesv 96.2 0.065 1.4E-06 47.9 11.0 79 79-161 270-351 (379)
37 PHA03365 hypothetical protein; 96.0 0.089 1.9E-06 47.4 10.7 82 79-164 291-374 (419)
38 PHA03123 dUTPase; Provisional 95.4 0.14 3E-06 45.9 9.3 79 86-165 80-163 (402)
39 PHA03130 dUTPase; Provisional 95.1 0.14 3E-06 45.3 8.6 74 90-166 60-134 (368)
40 PF05784 Herpes_UL82_83: Betah 93.5 0.02 4.4E-07 50.7 0.0 76 81-162 268-343 (348)
41 PF09160 FimH_man-bind: FimH, 68.2 7.9 0.00017 30.3 3.8 34 131-165 102-135 (147)
42 PF06284 Cytomega_UL84: Cytome 56.6 32 0.0007 31.6 5.9 58 104-166 402-459 (530)
43 PF06088 TLP-20: Nucleopolyhed 51.9 29 0.00064 27.8 4.5 29 131-161 80-108 (169)
44 cd00235 TLP-20 Telokin-like pr 43.5 48 0.001 24.7 4.2 28 131-160 80-107 (108)
45 PF05784 Herpes_UL82_83: Betah 40.8 9.1 0.0002 34.1 0.0 69 81-149 18-92 (348)
46 PLN02741 riboflavin synthase 32.6 20 0.00044 29.2 0.8 54 97-154 122-181 (194)
47 PF07610 DUF1573: Protein of u 28.9 54 0.0012 19.9 2.1 16 135-150 1-16 (45)
48 PF13342 Toprim_Crpt: C-termin 26.5 2E+02 0.0042 19.0 4.8 24 3-26 15-40 (62)
49 PHA03257 Capsid triplex subuni 24.9 1.1E+02 0.0024 27.0 4.0 31 124-157 86-116 (316)
50 PF00314 Thaumatin: Thaumatin 23.8 76 0.0017 26.1 2.8 29 79-113 22-50 (213)
51 PF07070 Spo0M: SpoOM protein; 23.6 2.9E+02 0.0062 23.0 6.1 53 79-135 77-130 (218)
52 COG3895 Predicted periplasmic 23.3 1.8E+02 0.0038 21.8 4.3 41 133-177 43-83 (112)
53 cd08961 GH64-TLP-SF glycoside 22.9 83 0.0018 24.7 2.7 28 80-113 27-54 (153)
54 TIGR00187 ribE riboflavin synt 22.7 34 0.00074 28.0 0.5 54 97-154 122-180 (200)
55 PRK13202 ureB urease subunit b 22.0 1.4E+02 0.0031 22.0 3.6 24 126-149 15-38 (104)
56 PF11941 DUF3459: Domain of un 20.7 1.9E+02 0.0041 19.4 3.9 29 132-161 42-70 (89)
57 PF05506 DUF756: Domain of unk 20.2 1.4E+02 0.0031 20.5 3.2 14 132-145 20-33 (89)
58 PF12690 BsuPI: Intracellular 20.0 1.4E+02 0.003 20.7 3.1 32 133-164 3-35 (82)
No 1
>PRK00416 dcd deoxycytidine triphosphate deaminase; Reviewed
Probab=100.00 E-value=3.4e-51 Score=328.58 Aligned_cols=176 Identities=54% Similarity=0.954 Sum_probs=160.4
Q ss_pred ccCCHHHHHHHHHhCC-CcCCCCcCccccccccceeecCcceeeEEeeeCCeEEEEecCCceeecCCCCCCcceEEecCc
Q psy9404 2 TIKSDNWIHNMAKYHG-MIEPFVPHQVREINSRKIVSYGISSYGYDIRCANEFKIFTNINSTIIDPKNFDNKLFVDFVGD 80 (188)
Q Consensus 2 miLsd~~I~~~~~~~~-~I~Pf~~~~i~pa~~~~~~~~~~~~~s~DlrLg~~~~~~~~~~~~~id~~~~~~~~~~~~~~~ 80 (188)
|||||++|+++++++. +|+||+++|+||+.. |||||||+.|++|+.....++|+++..+....+++++
T Consensus 1 MiLsd~~I~~~i~~g~i~I~Pf~~~~i~p~~~-----------s~DLrlg~~~~i~~~~~~~~id~~~~~~~~~~~~~~~ 69 (177)
T PRK00416 1 MILSDRDIRKMLEEGRLMIEPFDPDQVRPNAT-----------GYDLRLGNEFRVFTNVNSTVIDPKNFDPDSFVDIEGE 69 (177)
T ss_pred CcCCHHHHHHHHHcCCcEEeCCCHHHcCcCCc-----------eEEEeecCEEEEeecCCccccCcccCCcCcEEEccCC
Confidence 8999999999998887 699999999997311 8999999999999865567889877655555556678
Q ss_pred eEEECCCCEEEEEeeeEEEcCCCeEEEEEccccccccCeEeecceeCCCCceEEEEEEEeCCCCCEEEeCCCeEEEEEEe
Q psy9404 81 VCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVLFF 160 (188)
Q Consensus 81 ~~~l~Pg~~~lv~T~E~i~lP~~~~~~i~~RSsl~R~Gl~v~~t~iDpGy~G~i~l~i~N~~~~~i~i~~G~riaQlvF~ 160 (188)
+++|+||+++|+.|.|++.+|++++|++.+|||++|+|+.+++++|||||+|+|+++++|+++.+++|++|+|||||+|+
T Consensus 70 ~~~l~pg~~~lv~t~e~i~lP~~~~~~i~~RSslar~Gl~v~~~~iD~Gy~G~i~l~l~n~~~~~i~I~~g~rIaQlvf~ 149 (177)
T PRK00416 70 VFILPPGEFALARTLEYFKLPDDVVGILEGRSSLARLGLIVHVTAIDPGWEGHITLEFSNSGPLPVKLYPGEGIGQLLFF 149 (177)
T ss_pred eEEECCCCEEEEEeeeEEECCCCeEEEEEeCchhhcCCEEecCceECcCCcCEEEEEEEeCCCCCEEECCCCEEEEEEEE
Confidence 89999999999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred eccccccccccCCCcccCCCCCCCCCCC
Q psy9404 161 ESDETCKTSYKDRNGKYQGQTGINLPKI 188 (188)
Q Consensus 161 ~~~~~~~~~Y~~~~GkYq~~~~~~~s~~ 188 (188)
+++++++.+|.++.||||+|+++++||+
T Consensus 150 ~~~~~~~~~Y~~~~gkYq~q~~~~~s~~ 177 (177)
T PRK00416 150 ELSEPAERPYNDRGGKYQGQRGVTLSRI 177 (177)
T ss_pred ECCCccccCccccCcccCCCCCCCccCC
Confidence 9998888999766699999999999985
No 2
>COG0717 Dcd Deoxycytidine deaminase [Nucleotide transport and metabolism]
Probab=100.00 E-value=5.1e-51 Score=327.90 Aligned_cols=174 Identities=41% Similarity=0.745 Sum_probs=158.2
Q ss_pred ccCCHHHHHHHHHhCC-CcCCCCcC--ccccccccceeecCcceeeEEeeeCCeEEEEecCCceeecCCCCCCc-ce---
Q psy9404 2 TIKSDNWIHNMAKYHG-MIEPFVPH--QVREINSRKIVSYGISSYGYDIRCANEFKIFTNINSTIIDPKNFDNK-LF--- 74 (188)
Q Consensus 2 miLsd~~I~~~~~~~~-~I~Pf~~~--~i~pa~~~~~~~~~~~~~s~DlrLg~~~~~~~~~~~~~id~~~~~~~-~~--- 74 (188)
|||||++|++++.++. +|+||.+. ++||+ ||||||+++|.+|...+.++||+++.... .+
T Consensus 1 milsd~~I~~~i~~~~~~i~p~~~~~~~i~p~-------------g~Dlrl~~ef~vf~~~~~~~iD~~~~~~~~~~~~~ 67 (183)
T COG0717 1 MILSDRDIRKMVEEGRLLIEPFEDKEYQIQPA-------------GYDLRLGNEFRVFRNEGAGVIDPDNPDEEDPLVEE 67 (183)
T ss_pred CccCHHHHHHHHhcCcceeccCCCcccccccc-------------cEEEEeccEEEEEeccCCcEEcCCcccccccccee
Confidence 8999999999998864 79999866 99975 99999999999999987889999877542 12
Q ss_pred EEecCceEEECCCCEEEEEeeeEEEcCCCeEEEEEccccccccCeEeecceeCCCCceEEEEEEEeCCCCCEEEeCCCeE
Q psy9404 75 VDFVGDVCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYSEEGC 154 (188)
Q Consensus 75 ~~~~~~~~~l~Pg~~~lv~T~E~i~lP~~~~~~i~~RSsl~R~Gl~v~~t~iDpGy~G~i~l~i~N~~~~~i~i~~G~ri 154 (188)
...+++.++|+|+++||+.|.|+|+||+|++|++.+|||++|+|+.+++++|||||+|++|++++|+++.|++|++|+||
T Consensus 68 ~~~e~~~~il~P~~~~L~~t~E~i~iP~~v~~~~~gRSSlaR~G~~~~~~~~DpGf~G~itle~~n~~~~p~~L~~g~rI 147 (183)
T COG0717 68 EELEDGEFILPPGEFYLAVTLEYVEIPEDVAAFCTGRSSLARLGLIVHVGVIDPGFEGRITLELVNSGPLPIRLYPGERI 147 (183)
T ss_pred eeccCCcEEECCCcEEEEEEEEEEEcCcceEEEEEccCchhhCcEEecCccCCCCcCceEEEEEEecCCCCeEEcCCCEE
Confidence 22223369999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeccccccccccCCCcccCCCCCCCCCCC
Q psy9404 155 AQVLFFESDETCKTSYKDRNGKYQGQTGINLPKI 188 (188)
Q Consensus 155 aQlvF~~~~~~~~~~Y~~~~GkYq~~~~~~~s~~ 188 (188)
|||||++++++++.+|+.++||||+|+++++||+
T Consensus 148 ~QLvF~~l~~~~~~~Y~~~~gkYq~q~gv~~~~~ 181 (183)
T COG0717 148 AQLVFLELDSPAERPYSGRGGKYQGQRGVTPSRI 181 (183)
T ss_pred EEEEEEEccccccccccCCCCccccCcCcCcccc
Confidence 9999999998889999887899999999999985
No 3
>PHA01707 dut 2'-deoxyuridine 5'-triphosphatase
Probab=100.00 E-value=3.5e-50 Score=317.44 Aligned_cols=156 Identities=33% Similarity=0.535 Sum_probs=143.8
Q ss_pred ccCCHHHHHHHHHhCC-CcCCCCcCccccccccceeecCcceeeEEeeeCCeEEEEecCCceeecCCCCCCcceEEecCc
Q psy9404 2 TIKSDNWIHNMAKYHG-MIEPFVPHQVREINSRKIVSYGISSYGYDIRCANEFKIFTNINSTIIDPKNFDNKLFVDFVGD 80 (188)
Q Consensus 2 miLsd~~I~~~~~~~~-~I~Pf~~~~i~pa~~~~~~~~~~~~~s~DlrLg~~~~~~~~~~~~~id~~~~~~~~~~~~~~~ 80 (188)
|||||++|++++++|. +|+||+++|+||+ |||||||++|++|++. ++ ...++
T Consensus 1 miLsd~~I~~~i~~g~i~I~Pf~~~~v~p~-------------s~DlrLg~~~~~~~~~----~~----------~~~~~ 53 (158)
T PHA01707 1 MILSDRDIKYYINKGWLVIEPLSEDTIREN-------------GVDLKIGNEIVRIKEN----ME----------KEVGD 53 (158)
T ss_pred CcCCHHHHHHHHHcCCeEEcCCCHHHcCCc-------------eEEEEecCeEEEEecc----cc----------cccCC
Confidence 8999999999998876 5999999999976 9999999999999752 10 11346
Q ss_pred eEEECCCCEEEEEeeeEEEcCCCeEEEEEccccccccCeEeecceeCCCCceEEEEEEEeCCCCCEEEeCCCeEEEEEEe
Q psy9404 81 VCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVLFF 160 (188)
Q Consensus 81 ~~~l~Pg~~~lv~T~E~i~lP~~~~~~i~~RSsl~R~Gl~v~~t~iDpGy~G~i~l~i~N~~~~~i~i~~G~riaQlvF~ 160 (188)
.++|+||+++|+.|.|+++||++++|++.+|||++|+|+.++.++|||||+|+|+++++| ++.|++|++|+|||||+|+
T Consensus 54 ~~~l~Pg~~~l~~T~E~i~lP~~~~~~i~~RSslaR~Gl~v~~~~iD~Gy~G~i~lel~n-~~~pi~i~~G~rIaQlvf~ 132 (158)
T PHA01707 54 EFIIYPHEHVLLTTKEYIKLPNDIIAFCNLRSTFARKGLLIPPTIVDAGFEGQLTIELVG-SSIPVKLKSGERFLHLIFA 132 (158)
T ss_pred cEEECCCCEEEEEEeEEEECCCCEEEEEECcchhhhCCEEecceeECCCCCCEEEEEEEe-CCCCEEECCCCEEEEEEEE
Confidence 899999999999999999999999999999999999999999889999999999999999 6789999999999999999
Q ss_pred eccccccccccCCCcccCCCCCCCCCCC
Q psy9404 161 ESDETCKTSYKDRNGKYQGQTGINLPKI 188 (188)
Q Consensus 161 ~~~~~~~~~Y~~~~GkYq~~~~~~~s~~ 188 (188)
++.++++++| +||||+|+|+++||+
T Consensus 133 ~~~~~~~~~Y---~gkYq~q~~~~~s~~ 157 (158)
T PHA01707 133 RTLTPVEKPY---NGKYQKQKGVTLAKE 157 (158)
T ss_pred EcccccCCCc---CCEeCCCCCCccccc
Confidence 9998888999 899999999999985
No 4
>TIGR02274 dCTP_deam deoxycytidine triphosphate deaminase. Members of this family include the Escherichia coli monofunctional deoxycytidine triphosphate deaminase (dCTP deaminase) and a Methanocaldococcus jannaschii bifunctional dCTP deaminase (3.5.4.13)/dUTP diphosphatase (EC 3.6.1.23), which has the EC number 3.5.4.30 for the overall operation.
Probab=100.00 E-value=4.6e-49 Score=316.70 Aligned_cols=173 Identities=35% Similarity=0.612 Sum_probs=154.6
Q ss_pred cCCHHHHHHHHHhCC-CcCCCCcCccccccccceeecCcceeeEEeeeCCeEEEEecCCceeecCCCCCCcceE--Eec-
Q psy9404 3 IKSDNWIHNMAKYHG-MIEPFVPHQVREINSRKIVSYGISSYGYDIRCANEFKIFTNINSTIIDPKNFDNKLFV--DFV- 78 (188)
Q Consensus 3 iLsd~~I~~~~~~~~-~I~Pf~~~~i~pa~~~~~~~~~~~~~s~DlrLg~~~~~~~~~~~~~id~~~~~~~~~~--~~~- 78 (188)
||||++|++++++|. +|+||+++|+||+ |||||||++|++|......++|+++....... .++
T Consensus 1 iLsd~~I~~~i~~g~i~I~Pf~~~~v~p~-------------s~DLrlg~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~ 67 (179)
T TIGR02274 1 ILSDRDIKRWLEEGLLKIEPLDEEQLQPA-------------GVDLRLGNEFRVFRNHTGAVIDPENPKEAVSYLFEVEE 67 (179)
T ss_pred CCCHHHHHHHHHcCCEEEcCCCccccCCc-------------eEEEecCCEEEEEeCCCCcccCcccccccceeeeeecc
Confidence 799999999998887 5999999999976 99999999999998765578898765432221 223
Q ss_pred CceEEECCCCEEEEEeeeEEEcCCCeEEEEEccccccccCeEeecc--eeCCCCceEEEEEEEeCCCCCEEEeCCCeEEE
Q psy9404 79 GDVCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYARCGIIVNVT--PFEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQ 156 (188)
Q Consensus 79 ~~~~~l~Pg~~~lv~T~E~i~lP~~~~~~i~~RSsl~R~Gl~v~~t--~iDpGy~G~i~l~i~N~~~~~i~i~~G~riaQ 156 (188)
++.++|+||+++|+.|.|++.+|++++|++.+|||++|+|+.++++ +|||||+|+++++++|+++.+++|++|+||||
T Consensus 68 ~~~~~l~Pg~~~lv~t~e~i~lP~~~~~~i~~RSslar~Gl~v~~~~g~iD~Gy~G~i~l~l~N~~~~~i~i~~g~rIaQ 147 (179)
T TIGR02274 68 GEEFVIPPGEFALATTLEYVKLPDDVVGFLEGRSSLARLGLFIHVTAGRIDPGFEGNITLELFNAGKLPVKLRPGMRIAQ 147 (179)
T ss_pred CCcEEECCCCEEEEEeceEEEcCCCeEEEEEeccccccCCEEecCCCCcCCcCCCCEEEEEEEeCCCCCEEECCCCEEEE
Confidence 4679999999999999999999999999999999999999998865 59999999999999999999999999999999
Q ss_pred EEEeeccccccccccCCCcccCCCCCCCCCCC
Q psy9404 157 VLFFESDETCKTSYKDRNGKYQGQTGINLPKI 188 (188)
Q Consensus 157 lvF~~~~~~~~~~Y~~~~GkYq~~~~~~~s~~ 188 (188)
|+|+++.++++++|.++.||||+|+++++||+
T Consensus 148 lvf~~~~~~~~~~Y~~~~g~Yq~q~g~~~s~~ 179 (179)
T TIGR02274 148 LVFERLSSPAERPYNGRSGKYQGQRGVTPSRI 179 (179)
T ss_pred EEEEECcccccccccccCCcccCCCCcccCCC
Confidence 99999999888999655699999999999986
No 5
>PRK02253 deoxyuridine 5'-triphosphate nucleotidohydrolase; Provisional
Probab=100.00 E-value=3.5e-42 Score=274.06 Aligned_cols=159 Identities=19% Similarity=0.235 Sum_probs=132.4
Q ss_pred ccCCHHHHHHHHHhCCC-cCCC---CcCccccccccceeecCcceeeEEeeeCCeEEEEecCCceeecCCCCCC--cceE
Q psy9404 2 TIKSDNWIHNMAKYHGM-IEPF---VPHQVREINSRKIVSYGISSYGYDIRCANEFKIFTNINSTIIDPKNFDN--KLFV 75 (188)
Q Consensus 2 miLsd~~I~~~~~~~~~-I~Pf---~~~~i~pa~~~~~~~~~~~~~s~DlrLg~~~~~~~~~~~~~id~~~~~~--~~~~ 75 (188)
|||||++|++++++|.+ |+|| +++|+||+ |||||||+.++++.. ..+|.++... ....
T Consensus 1 MiLs~~~I~~~i~~g~i~i~p~~~~~~~qiqp~-------------svDlrlg~~~~~~~~---~~id~~~~~~~~~~~i 64 (167)
T PRK02253 1 SLLSKEELRKLIRSGKFVAEHVVDLEDDQVQPN-------------GVDLTLGEVEEQEGP---GRIDFDNRKLPEREPL 64 (167)
T ss_pred CcCCHHHHHHHHHcCCeEeecCCCCChhhCCCc-------------EEEEECCcEEEEecC---CeecCccCcCCcceEE
Confidence 89999999999998885 7765 66899975 999999998888754 5677665322 2233
Q ss_pred EecC-ceEEECCCCEEEEEeeeEEEcCCCeEEEEEccccccccCeEeecceeCCCCceEEEEEEEeCCCCCEEEeCCCeE
Q psy9404 76 DFVG-DVCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYSEEGC 154 (188)
Q Consensus 76 ~~~~-~~~~l~Pg~~~lv~T~E~i~lP~~~~~~i~~RSsl~R~Gl~v~~t~iDpGy~G~i~l~i~N~~~~~i~i~~G~ri 154 (188)
++.+ +.++|+||+++ +.|.|++.+|++++|++.+|||++|+|+.++++.|||||+|++++.+.|.+..+++|++|+||
T Consensus 65 ~~~~~~~~~l~pg~~l-~~t~E~v~ip~~~~~~~~~RSsl~R~Gl~v~~~~iD~Gy~G~~~i~l~~~n~~~~~i~~G~rI 143 (167)
T PRK02253 65 EFDDDGWIRLEPGIYK-VRYNEVVNIPEDHVGFAYPRSSLLRNGCTLETAVWDAGYEGRGEGLLVVHNPHGIRLERGARI 143 (167)
T ss_pred ecCCCCeEEECCCCEE-EEeeeEEECCCCcEEEEECCcHHhhCCeEcCCccCCcCCCCCCEEEEEEeCCCCEEECCCCEE
Confidence 4443 67999999865 678999999999999999999999999999877799999996655555544579999999999
Q ss_pred EEEEEeeccccccccccCCCcccCCCC
Q psy9404 155 AQVLFFESDETCKTSYKDRNGKYQGQT 181 (188)
Q Consensus 155 aQlvF~~~~~~~~~~Y~~~~GkYq~~~ 181 (188)
|||||+++.+++ ++| +||||+|+
T Consensus 144 aQlvf~~~~~~~-~~Y---~GkYqg~~ 166 (167)
T PRK02253 144 AQLVFATLDHET-EGY---SGSYQGEN 166 (167)
T ss_pred EEEEEEECccCC-CCc---CCCcCCCc
Confidence 999999999875 899 89999995
No 6
>PRK07559 2'-deoxycytidine 5'-triphosphate deaminase; Provisional
Probab=100.00 E-value=2.4e-38 Score=277.64 Aligned_cols=170 Identities=15% Similarity=0.198 Sum_probs=147.0
Q ss_pred ccCCHHHHHHHHHhCCC-cCCCCcCccccccccceeecCcceeeEEeee-CCeEEEEec-CCceeecCCCCCC---c-ce
Q psy9404 2 TIKSDNWIHNMAKYHGM-IEPFVPHQVREINSRKIVSYGISSYGYDIRC-ANEFKIFTN-INSTIIDPKNFDN---K-LF 74 (188)
Q Consensus 2 miLsd~~I~~~~~~~~~-I~Pf~~~~i~pa~~~~~~~~~~~~~s~DlrL-g~~~~~~~~-~~~~~id~~~~~~---~-~~ 74 (188)
|+|||++|+++++++.+ |+|+++++++|+ |+|||| ++.|++|+. ....+||+++... . .+
T Consensus 171 m~Lsd~di~~~~~~g~l~i~p~~~~~i~~~-------------SVDlrl~g~~~~~f~~~~~~~~iD~~~~~~~~~~~~~ 237 (365)
T PRK07559 171 ARLSDAELAALHAAEPLVDGEDPSGGGIAL-------------SVDLSGGEDGLVGYRAKRHTGVIDVDRIGAHDVLDFW 237 (365)
T ss_pred eecCHHHHHHHHHcCCeEecCCCccccceE-------------EEEEecCCCcEEEEeCCCCCceeccccccccchhhhc
Confidence 89999999999999885 999999999987 999999 899999988 6678999775432 2 22
Q ss_pred EEe--c-CceEEECCCCEEEEEeeeEEEcCCCeEEEEEccccccccCeE-ee-cceeCCCCc--------eEEEEEEEeC
Q psy9404 75 VDF--V-GDVCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYARCGII-VN-VTPFEPEWE--------GYVTLEFSNT 141 (188)
Q Consensus 75 ~~~--~-~~~~~l~Pg~~~lv~T~E~i~lP~~~~~~i~~RSsl~R~Gl~-v~-~t~iDpGy~--------G~i~l~i~N~ 141 (188)
+.+ + ++.++|+||++||+.|.|+|++|+|++|++.+||| |+|.+ +| ++.+||||. |+++||++|
T Consensus 238 e~i~~~~~~~~iL~Pgef~L~~t~E~v~lP~d~~a~~~~~~s--~~G~~~vh~Ag~~DpGf~~~~~~~~~g~~tLEi~~- 314 (365)
T PRK07559 238 EPLYARGDGELILDPGEFYILASREAVHVPPDYAAEMVPFDP--LVGEFRVHYAGFFDPGFGHAEAGGTGSRAVLEVRS- 314 (365)
T ss_pred eEEEecCCCcEEECCCCEEEEEEEEEEeCChhHeEEEeccCc--ceeeeeccccceECCCCCcccccCCCceEEEEEEe-
Confidence 222 2 57899999999999999999999999999997776 66654 54 456999999 999999998
Q ss_pred CCCCEEEeCCCeEEEEEEeeccccccccccCC-CcccCCCCCCCCCCC
Q psy9404 142 TPLPAKIYSEEGCAQVLFFESDETCKTSYKDR-NGKYQGQTGINLPKI 188 (188)
Q Consensus 142 ~~~~i~i~~G~riaQlvF~~~~~~~~~~Y~~~-~GkYq~~~~~~~s~~ 188 (188)
++.|++|++|||||||+|+++.++++++|+.+ .||||+| |+++||.
T Consensus 315 ~~~P~~L~~G~ri~qlvf~~~~~~~~~~Y~~~~~g~Yq~Q-g~~lsk~ 361 (365)
T PRK07559 315 HEVPFILEHGQIVGRLVYERMLERPDALYGAGLGSNYQGQ-GLKLSKH 361 (365)
T ss_pred CCCcEEecCCCEEEEEEEEEcCCCcccCCCCCcCCEeccC-CCCcccc
Confidence 77899999999999999999999999999643 5999999 9999984
No 7
>PRK07559 2'-deoxycytidine 5'-triphosphate deaminase; Provisional
Probab=100.00 E-value=9.4e-38 Score=273.92 Aligned_cols=148 Identities=15% Similarity=0.202 Sum_probs=126.7
Q ss_pred CccCCHHHHHHHHHhCCC-c-CCCCcCccccccccceeecCcceeeEEeeeCCeEEEEecC-----CceeecCCCCCCcc
Q psy9404 1 MTIKSDNWIHNMAKYHGM-I-EPFVPHQVREINSRKIVSYGISSYGYDIRCANEFKIFTNI-----NSTIIDPKNFDNKL 73 (188)
Q Consensus 1 MmiLsd~~I~~~~~~~~~-I-~Pf~~~~i~pa~~~~~~~~~~~~~s~DlrLg~~~~~~~~~-----~~~~id~~~~~~~~ 73 (188)
||||||++|++++++|.+ | +||+++||||+ |||||||++|++|.++ ...++|..+. ..
T Consensus 8 ~~ILsd~~I~~~i~~G~I~I~~P~~~~qIqPa-------------SvDLrLG~~~~~~~~~~~~~~~~~v~d~~~~--~~ 72 (365)
T PRK07559 8 AGILPDQAIAALIASGAITSERPLDDDQIQPA-------------SLDLRLGAKAYRVRASFLPGPGRTVADRLDR--LK 72 (365)
T ss_pred ccccCHHHHHHHHHcCCEEecCCCChhhcCCc-------------eEEEeeCCcEEEEEcccCCCccccccccccc--cc
Confidence 899999999999988875 8 89999999986 9999999999999752 1234444321 22
Q ss_pred eEEec-CceEEECCCCEEEEEeeeEEEcCCCeEEEEEccccccccCeEeec--------ceeCCCCceEEEEEEEeCCCC
Q psy9404 74 FVDFV-GDVCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYARCGIIVNV--------TPFEPEWEGYVTLEFSNTTPL 144 (188)
Q Consensus 74 ~~~~~-~~~~~l~Pg~~~lv~T~E~i~lP~~~~~~i~~RSsl~R~Gl~v~~--------t~iDpGy~G~i~l~i~N~~~~ 144 (188)
+.+++ +++++|+||++||+.|.|+++||++++|++++|||++|+|++++. +.|||||+|+|+|||+| ++.
T Consensus 73 ~~~~~~~eg~vL~Pg~~yL~~t~E~v~LP~dl~a~~~~RSSlgRlGl~i~~~a~~~~~~~~iDpGy~G~itLEi~~-~~~ 151 (365)
T PRK07559 73 LHEIDLTDGAVLETGCVYIVPLLESLALPADLSASANPKSSTGRLDVFTRVITDGAQEFDKIPAGYHGPLYAEISP-RTF 151 (365)
T ss_pred eeeecCCCceEEcCCeEEEEEEEEEEeCCcceEEEEeccchhhhCCeEEEEecccccccCccCCCccceEEEEEec-CCc
Confidence 33433 478999999999999999999999999999999999999998764 23899999999999998 778
Q ss_pred CEEEeCCCeEEEEEEeeccc
Q psy9404 145 PAKIYSEEGCAQVLFFESDE 164 (188)
Q Consensus 145 ~i~i~~G~riaQlvF~~~~~ 164 (188)
||+|++|+|||||+|++-..
T Consensus 152 pI~l~pG~RI~QlvF~~~~m 171 (365)
T PRK07559 152 PILVRTGSRLSQIRFRRGEA 171 (365)
T ss_pred cEEEeCCCEEEEEEEEcCce
Confidence 99999999999999998654
No 8
>PF06559 DCD: 2'-deoxycytidine 5'-triphosphate deaminase (DCD); InterPro: IPR010550 This family consists of several bacterial 2'-deoxycytidine 5'-triphosphate deaminase proteins (3.5.4.13 from EC).; GO: 0008829 dCTP deaminase activity; PDB: 2R9Q_C.
Probab=99.97 E-value=1.9e-30 Score=222.68 Aligned_cols=146 Identities=19% Similarity=0.263 Sum_probs=101.9
Q ss_pred ccCCHHHHHHHHHhCCC-cC-CCCcCccccccccceeecCcceeeEEeeeCCeEEEEecCCceeec-CCCCCC-----cc
Q psy9404 2 TIKSDNWIHNMAKYHGM-IE-PFVPHQVREINSRKIVSYGISSYGYDIRCANEFKIFTNINSTIID-PKNFDN-----KL 73 (188)
Q Consensus 2 miLsd~~I~~~~~~~~~-I~-Pf~~~~i~pa~~~~~~~~~~~~~s~DlrLg~~~~~~~~~~~~~id-~~~~~~-----~~ 73 (188)
.||||++|+++++.|.+ ++ |++++||||| |+|||||+.+++...+ .+- ++.... ..
T Consensus 8 GiL~Dr~I~~li~~G~I~~~~pl~~~QIQPA-------------SLDLRLG~~ayRVrAS---FLpG~~~~V~d~L~~~~ 71 (364)
T PF06559_consen 8 GILPDRDIKALIAAGAISIDPPLDEDQIQPA-------------SLDLRLGNKAYRVRAS---FLPGPGRTVADRLEEFE 71 (364)
T ss_dssp EE--HHHHHHHHHTTSEEESS---TT-EETT-------------EEEEEB-SEEEEESSB-------TT--HHHHHHH--
T ss_pred ccCCHHHHHHHHHCCCEecCCCCCccccCCc-------------ceeeecCceEEEEecc---cCCCCCCchhHhhhhee
Confidence 48999999999998885 77 6999999999 9999999876554432 221 111111 13
Q ss_pred eEEec-CceEEECCCCEEEEEeeeEEEcCCCeEEEEEccccccccCeEeecce--------eCCCCceEEEEEEEeCCCC
Q psy9404 74 FVDFV-GDVCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYARCGIIVNVTP--------FEPEWEGYVTLEFSNTTPL 144 (188)
Q Consensus 74 ~~~~~-~~~~~l~Pg~~~lv~T~E~i~lP~~~~~~i~~RSsl~R~Gl~v~~t~--------iDpGy~G~i~l~i~N~~~~ 144 (188)
+++++ .++.+|+||++|+++|.|++.||+++.|.+.+|||++|+|++++.++ |+|||+|.|++||+| ...
T Consensus 72 lheIDL~~GaVLE~GcVYlvpl~EsL~LP~di~A~anpKSStGRLdlftRvitd~~~~Fd~I~~Gy~GpLylEIsp-rtf 150 (364)
T PF06559_consen 72 LHEIDLTDGAVLEPGCVYLVPLMESLALPADISARANPKSSTGRLDLFTRVITDGGAEFDRIPPGYSGPLYLEISP-RTF 150 (364)
T ss_dssp -EEEE-SS-EEE-TT-EEEEEEEEEEE--TTEEEEEEE-HHHHHTTEEEEEEETT-SSTTEE-TT-EEEEEEEEEE-SSS
T ss_pred eEEEecCCCceecCCeEEEEEeEeeecCCcCcEEEEcCcccccccceEEEEeccCccccCccCCCCcccEEEEEcC-Cee
Confidence 34553 46789999999999999999999999999999999999999988654 999999999999999 689
Q ss_pred CEEEeCCCeEEEEEEeeccc
Q psy9404 145 PAKIYSEEGCAQVLFFESDE 164 (188)
Q Consensus 145 ~i~i~~G~riaQlvF~~~~~ 164 (188)
||.+++|+|++||.|.+...
T Consensus 151 pI~vrpG~rL~QirFr~g~~ 170 (364)
T PF06559_consen 151 PILVRPGMRLSQIRFRRGQA 170 (364)
T ss_dssp -EEE-TT-EEEEEEEEES--
T ss_pred eEEEcCCCceeeEEEecCCc
Confidence 99999999999999988653
No 9
>cd07557 trimeric_dUTPase Trimeric dUTP diphosphatases. Trimeric dUTP diphosphatases, or dUTPases, are the most common family of dUTPase, found in bacteria, eukaryotes, and archaea. They catalyze the hydrolysis of the dUTP-Mg complex (dUTP-Mg) into dUMP and pyrophosphate. This reaction is crucial for the preservation of chromosomal integrity as it removes dUTP and therefore reduces the cellular dUTP/dTTP ratio, and prevents dUTP from being incorporated into DNA. It also provides dUMP as the precursor for dTTP synthesis via the thymidylate synthase pathway. dUTPases are homotrimeric, except some monomeric viral dUTPases, which have been shown to mimic a trimer. Active sites are located at the subunit interface.
Probab=99.95 E-value=6.1e-27 Score=168.34 Aligned_cols=79 Identities=32% Similarity=0.492 Sum_probs=76.9
Q ss_pred eEEECCCCEEEEEeeeEEEcCCCeEEEEEccccccccCeEeec-ceeCCCCceEEEEEEEeCCCCCEEEeCCCeEEEEEE
Q psy9404 81 VCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYARCGIIVNV-TPFEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVLF 159 (188)
Q Consensus 81 ~~~l~Pg~~~lv~T~E~i~lP~~~~~~i~~RSsl~R~Gl~v~~-t~iDpGy~G~i~l~i~N~~~~~i~i~~G~riaQlvF 159 (188)
.++|+|++++++.|.|++.+|++++|++.+|||++|+|+.+++ +.|||||+|+++++++|+++.+++|++|+|||||+|
T Consensus 13 ~~~i~P~~~~~v~t~~~i~~p~~~~~~i~~RSs~~~~Gi~v~~~g~iD~gy~G~l~v~l~N~~~~~~~i~~G~~iaQlvf 92 (92)
T cd07557 13 GIVLPPGETVLVPTGEAIELPEGYVGLVFPRSSLARKGITVHNAGVIDPGYRGEITLELYNLGPEPVVIKKGDRIAQLVF 92 (92)
T ss_pred CEEEcCCCEEEEEEeEEEEcCCCeEEEEEcCchhhcCCEEecCCcccCCCCcceEEEEEEECCCCCEEECCCCEEEEEEC
Confidence 5789999999999999999999999999999999999999998 889999999999999999999999999999999997
No 10
>PF00692 dUTPase: dUTPase; InterPro: IPR008180 Synonym(s): dUTP diphosphatase, Deoxyuridine-triphosphatase The essential enzyme dUTP pyrophosphatase (3.6.1.23 from EC) is specific for dUTP and is critical for the fidelity of DNA replication and repair. dUTPase hydrolyzes dUTP to dUMP and pyrophosphate, simultaneously reducing dUTP levels and providing the dUMP for dTTP biosynthesis. dUTPase decreases the intracellular concentration of dUPT so that uracil cannot be incorporated into DNA []. The crystal structure of human dUTPase reveals that each subunit of the dUTPase trimer folds into an eight-stranded jelly-roll beta barrel, with the C-terminal beta strands interchanged among the subunits. The structure is similar to that of the Escherichia coli enzyme, despite low sequence homology between the two enzymes []. Other enzymes like deoxycytidine triphosphate deaminase (dCTP) (3.5.4.13 from EC) that specifically bind uridine also belong to this group suggesting that the signature may recognise a putative uridine-binding motif. Some retroviruses encode dUTPases. Retroviral dUTPase is synthesised as part of POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, dUTPase and RNase H. ; GO: 0016787 hydrolase activity, 0046080 dUTP metabolic process; PDB: 4DHK_A 1DUC_A 1DUN_A 3LQW_A 2BT1_A 2WE1_A 2WE0_A 2WE2_A 2BSY_A 2WE3_A ....
Probab=99.93 E-value=2.5e-25 Score=169.52 Aligned_cols=105 Identities=24% Similarity=0.372 Sum_probs=94.7
Q ss_pred eEEECCCCEEEEEeeeEEEcCCCeEEEEEccccccccCeEeecceeCCCCceEEEEEEEeCCCCCEEEeCCCeEEEEEEe
Q psy9404 81 VCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVLFF 160 (188)
Q Consensus 81 ~~~l~Pg~~~lv~T~E~i~lP~~~~~~i~~RSsl~R~Gl~v~~t~iDpGy~G~i~l~i~N~~~~~i~i~~G~riaQlvF~ 160 (188)
.++|+|++++++.|.|.+.+|++++|++.+|||++|+|+.+.++.|||||+|+|++.++|.++.+++|++|+|||||+|+
T Consensus 23 ~~~i~p~~~~~v~t~~~~~~p~~~~~~i~~RSsl~~~gl~v~~gvid~~y~G~i~i~i~N~s~~~~~i~~G~riaQlv~~ 102 (129)
T PF00692_consen 23 DFVIPPGETVLVPTGEEINIPPGYYALILPRSSLARKGLIVHPGVIDPGYRGEIKIIIYNHSDEPIRIEKGDRIAQLVFI 102 (129)
T ss_dssp SEEEETTEEEEEEEEEEEE-STTEEEEEEE-HHHHHHTEEEETEEEETTBESEEEEEEEESSSSSEEEETTSEEEEEEEE
T ss_pred CEEECCCCEEEEEeCeEEECCCCcEEEEecCchHHhcCccccCcccCCCcccceEEEEEeccceeccccCCCEEEEEEEE
Confidence 46789999999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred eccccccccccCCCcccCCCCCCCC
Q psy9404 161 ESDETCKTSYKDRNGKYQGQTGINL 185 (188)
Q Consensus 161 ~~~~~~~~~Y~~~~GkYq~~~~~~~ 185 (188)
++...+.++|...+.++.++.|+.-
T Consensus 103 ~~~~~~~~~~~~~~~~~rg~~Gfgs 127 (129)
T PF00692_consen 103 PLSTPPVEPVEEFSNTERGEGGFGS 127 (129)
T ss_dssp EBESEEEEEESSTTTSSSTTTSTTT
T ss_pred ecCccceEEccccCCccCCCCCCCC
Confidence 9998555788666788888887653
No 11
>PHA03094 dUTPase; Provisional
Probab=99.92 E-value=2.3e-24 Score=167.91 Aligned_cols=86 Identities=19% Similarity=0.239 Sum_probs=81.2
Q ss_pred eEEECCCCEEEEEeeeEEEcCCCeEEEEEcccccccc-CeEeecceeCCCCceEEEEEEEeCCCCCEEEeCCCeEEEEEE
Q psy9404 81 VCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYARC-GIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVLF 159 (188)
Q Consensus 81 ~~~l~Pg~~~lv~T~E~i~lP~~~~~~i~~RSsl~R~-Gl~v~~t~iDpGy~G~i~l~i~N~~~~~i~i~~G~riaQlvF 159 (188)
.++|+||+.+++.|++++.+|++++|++.+|||++++ ||.+..+.||+||+|+|++.++|+++.++.|++|+|||||+|
T Consensus 35 ~~~i~P~~~~lv~Tg~~i~ip~g~~g~i~~RSsla~k~Gl~v~~GvID~gYrGei~v~l~N~~~~~~~I~~G~RIaQlvf 114 (144)
T PHA03094 35 DYTVPPKERILVKTDISLSIPKFCYGRIAPRSGLSLNYGIDIGGGVIDEDYRGNIGVIFINNGKCTFNIKTGDRIAQIIF 114 (144)
T ss_pred CeEECCCCEEEEEcCeEEEcCCCEEEEEEccccccccCCeeecCceECCCCCCceEEEEEECCCCCeEECCCCEEEEEEE
Confidence 4789999999999999999999999999999999995 998888889999999999999999999999999999999999
Q ss_pred eeccccc
Q psy9404 160 FESDETC 166 (188)
Q Consensus 160 ~~~~~~~ 166 (188)
+++..+.
T Consensus 115 ~~~~~~~ 121 (144)
T PHA03094 115 ERIEYPE 121 (144)
T ss_pred EEcccCc
Confidence 9987653
No 12
>TIGR00576 dut deoxyuridine 5'-triphosphate nucleotidohydrolase (dut). Changed role from 132 to 123. RTD
Probab=99.90 E-value=1.8e-23 Score=162.27 Aligned_cols=83 Identities=16% Similarity=0.199 Sum_probs=77.7
Q ss_pred EEECCCCEEEEEeeeEEEcCCCeEEEEEcccccc-ccCeEee--cceeCCCCceEEEEEEEeCCCCCEEEeCCCeEEEEE
Q psy9404 82 CIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYA-RCGIIVN--VTPFEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVL 158 (188)
Q Consensus 82 ~~l~Pg~~~lv~T~E~i~lP~~~~~~i~~RSsl~-R~Gl~v~--~t~iDpGy~G~i~l~i~N~~~~~i~i~~G~riaQlv 158 (188)
++|+||+.+++.|+|++.+|+++++++.+|||++ |.|+.++ .+.|||||+|+|+++++|+++.++.|++|+||||||
T Consensus 31 ~~i~P~~~~lv~tg~~v~ip~g~~~~i~~RSsl~~k~gi~v~~~~GvID~gy~Gei~v~l~N~~~~~~~i~~G~rIaQlV 110 (141)
T TIGR00576 31 VTIPPGERALVPTGIAIELPDGYYGRVAPRSGLALKHGVTIDNSPGVIDSDYRGEIKVILINLGKEDFTVKKGDRIAQLV 110 (141)
T ss_pred eEECCCCEEEEEeCcEEecCCCEEEEEEecccCcccCCEEEeecCceECCCCCCceeEEEEeCCCCCEEEcCCCEEEEEE
Confidence 5689999999999999999999999999999998 8897655 456999999999999999999999999999999999
Q ss_pred Eeeccc
Q psy9404 159 FFESDE 164 (188)
Q Consensus 159 F~~~~~ 164 (188)
|+++..
T Consensus 111 ~~~~~~ 116 (141)
T TIGR00576 111 VEKIVT 116 (141)
T ss_pred EEeccc
Confidence 999976
No 13
>PHA02703 ORF007 dUTPase; Provisional
Probab=99.90 E-value=3e-23 Score=164.82 Aligned_cols=85 Identities=16% Similarity=0.150 Sum_probs=78.9
Q ss_pred eEEECCCCEEEEEeeeEEEcCCCeEEEEEccccccccC-eEeecceeCCCCceEEEEEEEeCCCCCEEEeCCCeEEEEEE
Q psy9404 81 VCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYARCG-IIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVLF 159 (188)
Q Consensus 81 ~~~l~Pg~~~lv~T~E~i~lP~~~~~~i~~RSsl~R~G-l~v~~t~iDpGy~G~i~l~i~N~~~~~i~i~~G~riaQlvF 159 (188)
.++|+||+.+++.|++++.+|++++|++.+|||++++| +.+..+.|||||+|+|++.++|+++.+++|++|+|||||||
T Consensus 43 d~vi~P~~~~lv~TGi~i~iP~g~~g~i~~RSsla~kg~i~v~~GvID~gYrGei~v~l~N~~~~~~~I~~G~RIaQLVf 122 (165)
T PHA02703 43 DCIVPAGCRCVVFTDLLIKLPDGCYGRIAPRSGLAVKHFIDVGAGVIDADYRGNVGVVLFNFGHNDFEVKKGDRIAQLIC 122 (165)
T ss_pred CeEECCCCEEEEeCCeEEEcCCCeEEEEECCccchhcCCEecccceECCCCcCceEEEEEECCCCCEEeCCCCEEEEEEE
Confidence 46789999999999999999999999999999999886 66666789999999999999999999999999999999999
Q ss_pred eecccc
Q psy9404 160 FESDET 165 (188)
Q Consensus 160 ~~~~~~ 165 (188)
+++..+
T Consensus 123 ~~~~~~ 128 (165)
T PHA02703 123 ERAAFP 128 (165)
T ss_pred EEcccc
Confidence 998653
No 14
>PLN02547 dUTP pyrophosphatase
Probab=99.89 E-value=1.1e-22 Score=160.52 Aligned_cols=85 Identities=16% Similarity=0.153 Sum_probs=79.1
Q ss_pred eEEECCCCEEEEEeeeEEEcCCCeEEEEEcccccccc-CeEeecceeCCCCceEEEEEEEeCCCCCEEEeCCCeEEEEEE
Q psy9404 81 VCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYARC-GIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVLF 159 (188)
Q Consensus 81 ~~~l~Pg~~~lv~T~E~i~lP~~~~~~i~~RSsl~R~-Gl~v~~t~iDpGy~G~i~l~i~N~~~~~i~i~~G~riaQlvF 159 (188)
.++|+|++.+++.|++++.+|++++|++.+|||++++ |+.+..+.||+||+|+|++.++|+++.++.|++|+|||||||
T Consensus 46 d~~i~P~~~~li~tgi~v~iP~g~~g~i~~RSgla~k~gi~~~~GvID~~Y~Gei~v~l~N~~~~~~~I~~G~RIaQlV~ 125 (157)
T PLN02547 46 DTVVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSIDVGAGVIDADYRGPVGVILFNHSDVDFEVKVGDRIAQLIL 125 (157)
T ss_pred CeEECCCCEEEEEeceEEEcCCCeEEEEEccccccccCcEecCCceECCCCCCceEEEEEeCCCCCEEEcCCCEEEEEEE
Confidence 4679999999999999999999999999999999976 677777889999999999999999999999999999999999
Q ss_pred eecccc
Q psy9404 160 FESDET 165 (188)
Q Consensus 160 ~~~~~~ 165 (188)
+++..+
T Consensus 126 ~~~~~~ 131 (157)
T PLN02547 126 EKIVTP 131 (157)
T ss_pred EEeeec
Confidence 987643
No 15
>PRK13956 dut deoxyuridine 5'-triphosphate nucleotidohydrolase; Provisional
Probab=99.89 E-value=6.6e-23 Score=160.02 Aligned_cols=84 Identities=17% Similarity=0.142 Sum_probs=77.4
Q ss_pred eEEECCCCEEEEEeeeEEEcCCCeEEEEEcccccccc-CeEee--cceeCCCCc------eEEEEEEEeCCCCCEEEeCC
Q psy9404 81 VCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYARC-GIIVN--VTPFEPEWE------GYVTLEFSNTTPLPAKIYSE 151 (188)
Q Consensus 81 ~~~l~Pg~~~lv~T~E~i~lP~~~~~~i~~RSsl~R~-Gl~v~--~t~iDpGy~------G~i~l~i~N~~~~~i~i~~G 151 (188)
.++|+||+.+++.|++++.+|++++|++.+|||++++ |+.+. .+.||+||+ |+|++.+.|.++.+++|++|
T Consensus 36 ~~~i~p~~~~lv~TGi~i~lP~g~~~~I~~RSsla~k~Gl~l~n~~GvIDsdYrGe~~~~G~i~v~l~N~~~~~~~I~~G 115 (147)
T PRK13956 36 RTVIAPGEIKLVPTGVKAYMQPGEVLYLYDRSSNPRKKGLVLINSVGVIDGDYYGNPANEGHIFAQMKNITDQEVVLEVG 115 (147)
T ss_pred CeEECCCCEEEEECCeEEECCCCeEEEEecCchhhhhCCEEEcCcCCeEcCCCCCCCCCCcEEEEEEEeCCCCCEEECCC
Confidence 4679999999999999999999999999999999977 99864 456999997 67999999999999999999
Q ss_pred CeEEEEEEeeccc
Q psy9404 152 EGCAQVLFFESDE 164 (188)
Q Consensus 152 ~riaQlvF~~~~~ 164 (188)
+|||||||+++..
T Consensus 116 dRIAQlv~~p~~~ 128 (147)
T PRK13956 116 ERIVQGVFMPFLI 128 (147)
T ss_pred CEEEEEEEEEEEE
Confidence 9999999999864
No 16
>PRK00601 dut deoxyuridine 5'-triphosphate nucleotidohydrolase; Provisional
Probab=99.88 E-value=2.8e-22 Score=157.17 Aligned_cols=85 Identities=19% Similarity=0.249 Sum_probs=79.6
Q ss_pred eEEECCCCEEEEEeeeEEEcCCCeEEEEEcccccc-ccCeEeec--ceeCCCCceEEEEEEEeCCCCCEEEeCCCeEEEE
Q psy9404 81 VCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYA-RCGIIVNV--TPFEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQV 157 (188)
Q Consensus 81 ~~~l~Pg~~~lv~T~E~i~lP~~~~~~i~~RSsl~-R~Gl~v~~--t~iDpGy~G~i~l~i~N~~~~~i~i~~G~riaQl 157 (188)
.++|+||+.+++.|+|++.+|+++++++.+|||++ |.|+.+.+ +.|||||+|++++++.|.++.++.|++|+|||||
T Consensus 39 ~i~i~P~~~~lv~tg~~v~~p~~~~~~i~~RSsla~k~Gl~v~~~~GvID~gy~Gei~i~l~N~~~~~v~I~~G~rIaQl 118 (150)
T PRK00601 39 PVTLAPGERALVPTGLAIHIPDGYEAQILPRSGLAHKHGIVLGNLPGTIDSDYRGELKVSLWNRGQEPFTIEPGERIAQL 118 (150)
T ss_pred CCEECCCCeEEEEcCEEEECCCCeEEEEEeCCcccccCCEEEecCcceeCCCCCCceEEEEEeCCCCCEEECCCCEEEEE
Confidence 57899999999999999999999999999999997 88998854 5699999999999999999999999999999999
Q ss_pred EEeecccc
Q psy9404 158 LFFESDET 165 (188)
Q Consensus 158 vF~~~~~~ 165 (188)
+|+++...
T Consensus 119 v~~~~~~~ 126 (150)
T PRK00601 119 VIVPVVQA 126 (150)
T ss_pred EEeccccc
Confidence 99998753
No 17
>PTZ00143 deoxyuridine 5'-triphosphate nucleotidohydrolase; Provisional
Probab=99.86 E-value=3.7e-21 Score=151.31 Aligned_cols=84 Identities=11% Similarity=0.136 Sum_probs=77.6
Q ss_pred eEEECCCCEEEEEeeeEEEcCC---------CeEEEEEccccccccCeEee--cceeCCCCceEEEEEEEeCCCCCEEEe
Q psy9404 81 VCIIPPNSFVLARTIEYFRIPR---------KILTMCIGKSTYARCGIIVN--VTPFEPEWEGYVTLEFSNTTPLPAKIY 149 (188)
Q Consensus 81 ~~~l~Pg~~~lv~T~E~i~lP~---------~~~~~i~~RSsl~R~Gl~v~--~t~iDpGy~G~i~l~i~N~~~~~i~i~ 149 (188)
.++|+||+..+|.|+.++.+|+ ++++++.+|||++++|+.+. .+.||+||+|++.+.+.|.++.+++|+
T Consensus 36 ~~~i~Pg~~~~V~tGi~i~~p~~~~~~~~~~g~~~~i~~RSsla~~gl~l~n~~GvID~gYrGei~v~l~N~~~~~~~I~ 115 (155)
T PTZ00143 36 DQTIKPGETAFIKLGIKAAAFQKDEDGSDGKNVSWLLFPRSSISKTPLRLANSIGLIDAGYRGELIAAVDNIKDEPYTIK 115 (155)
T ss_pred CeEECCCCEEEEECCeEEEcccccccccCCCCEEEEEEccCcccccCeEecccCCeECCCCCccEEEEEEECCCCCeEEC
Confidence 3678999999999999999986 99999999999999999876 456999999999999999999999999
Q ss_pred CCCeEEEEEEeeccc
Q psy9404 150 SEEGCAQVLFFESDE 164 (188)
Q Consensus 150 ~G~riaQlvF~~~~~ 164 (188)
+|+|||||||++...
T Consensus 116 ~G~RIaQlVi~~~~~ 130 (155)
T PTZ00143 116 KGDRLVQLVSFDGEP 130 (155)
T ss_pred CCCEEEEEEEEecce
Confidence 999999999987653
No 18
>COG0756 Dut dUTPase [Nucleotide transport and metabolism]
Probab=99.85 E-value=7e-21 Score=147.47 Aligned_cols=84 Identities=18% Similarity=0.178 Sum_probs=78.5
Q ss_pred EEECCCCEEEEEeeeEEEcCCCeEEEEEccccccc-cCeEeec--ceeCCCCceEEEEEEEeCCCCCEEEeCCCeEEEEE
Q psy9404 82 CIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYAR-CGIIVNV--TPFEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVL 158 (188)
Q Consensus 82 ~~l~Pg~~~lv~T~E~i~lP~~~~~~i~~RSsl~R-~Gl~v~~--t~iDpGy~G~i~l~i~N~~~~~i~i~~G~riaQlv 158 (188)
++|+||+..||+|+..+.||+++.+.+.|||+++. +|+.+-+ +.||++|+|++.+.+.|.++++++|++||||||+|
T Consensus 38 ~~i~pg~~~LVpTGl~~~ip~g~~~~v~PRSgla~k~Gi~~~Ns~G~IDsDYrGei~V~l~N~~~~~f~ie~GdRIaQ~V 117 (148)
T COG0756 38 VTIAPGERKLVPTGLAIELPEGYEAQVRPRSGLALKHGITLGNSPGTIDSDYRGEIKVLLINLGDEDFVIEKGDRIAQLV 117 (148)
T ss_pred eEECCCCeEEecCCEEEEcCCCcEEEEeccccCceeceEEEecCCceECCCCCceEEEEEEeCCCCCEEecCCCEEEEEE
Confidence 78999999999999999999999999999999985 6998764 55999999999999999999999999999999999
Q ss_pred Eeecccc
Q psy9404 159 FFESDET 165 (188)
Q Consensus 159 F~~~~~~ 165 (188)
|.+....
T Consensus 118 ~~~v~~~ 124 (148)
T COG0756 118 FVKVLQA 124 (148)
T ss_pred EEEEEec
Confidence 9998764
No 19
>PHA03131 dUTPase; Provisional
Probab=99.75 E-value=1e-17 Score=143.54 Aligned_cols=84 Identities=19% Similarity=0.192 Sum_probs=78.0
Q ss_pred ceEEECCCCEEEEEeeeEE-EcCCCeEEEEEccccccccCeEeecceeCCCCceEEEEEEEeCCCCCEEEeCCCeEEEEE
Q psy9404 80 DVCIIPPNSFVLARTIEYF-RIPRKILTMCIGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVL 158 (188)
Q Consensus 80 ~~~~l~Pg~~~lv~T~E~i-~lP~~~~~~i~~RSsl~R~Gl~v~~t~iDpGy~G~i~l~i~N~~~~~i~i~~G~riaQlv 158 (188)
+.++|+||+..++.|.-.+ .+|++++|++.+|||++++||.++++.|| +|+++++++|.++.+++|++|+||||||
T Consensus 141 ~~~~I~P~~~~~V~tg~~~~~~p~~~~~~I~~RSsla~kGl~v~~~~~~---~Gei~v~l~N~~~~~v~I~~G~RIAQlV 217 (286)
T PHA03131 141 QDLVIFPTTTFTFTLSLCCPPISPHFVPVIFGRSGLASKGLTVKPTKWR---RSGLQLKLYNYTDETIFLPAGSRICQVV 217 (286)
T ss_pred CCEEECCCCEEEEeCCeEEecCCCCEEEEEEcCchhhcCCeEEcCCeEE---CCEEEEEEEECCCCCEEECCCCEEEEEE
Confidence 5689999999999999995 99999999999999999999998877677 6999999999999999999999999999
Q ss_pred Eeeccccc
Q psy9404 159 FFESDETC 166 (188)
Q Consensus 159 F~~~~~~~ 166 (188)
|++...-+
T Consensus 218 f~~~~~~p 225 (286)
T PHA03131 218 FMHKDHLP 225 (286)
T ss_pred EEecccCc
Confidence 99987654
No 20
>PHA03123 dUTPase; Provisional
Probab=99.72 E-value=3.3e-17 Score=143.25 Aligned_cols=84 Identities=21% Similarity=0.177 Sum_probs=75.9
Q ss_pred ceEEECCCCEEEEEeee--EEEcCC-CeEEEEEccccccccCeEeecceeCCCCceEEEEEEEeCCCCCEEEeCCCeEEE
Q psy9404 80 DVCIIPPNSFVLARTIE--YFRIPR-KILTMCIGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQ 156 (188)
Q Consensus 80 ~~~~l~Pg~~~lv~T~E--~i~lP~-~~~~~i~~RSsl~R~Gl~v~~t~iDpGy~G~i~l~i~N~~~~~i~i~~G~riaQ 156 (188)
+.++|+||+..+|.|.. .+.+|. +++|++.+|||++|+||.+.++.||+||.| .+.++|+++.++.|++|+||||
T Consensus 253 eDvtI~PGEt~lV~TGI~~~i~i~~pGy~a~I~pRSGLAkKGLiV~~GvIDsGy~G--~V~L~N~~~epi~IkkGDRIAQ 330 (402)
T PHA03123 253 FEITLKANEFIKITLPFIQDLDLNHPNIDAYIFGRSSKNRIGIIVCPTAWIAGEHC--EFYIFNATGDDIIIKPGDKIAQ 330 (402)
T ss_pred CCcEECCCCEEEEeCCccceeccCCCCEEEEEEcccccccCCeEeCCceEcCCCcc--EEEEEECCCCCeEeCCCCEEEE
Confidence 45899999999999976 455644 999999999999999999988899999998 6889999999999999999999
Q ss_pred EEEeecccc
Q psy9404 157 VLFFESDET 165 (188)
Q Consensus 157 lvF~~~~~~ 165 (188)
|||++.+..
T Consensus 331 LVfm~~~~~ 339 (402)
T PHA03123 331 VLLIDHNNQ 339 (402)
T ss_pred EEEEEcccc
Confidence 999999654
No 21
>PF06559 DCD: 2'-deoxycytidine 5'-triphosphate deaminase (DCD); InterPro: IPR010550 This family consists of several bacterial 2'-deoxycytidine 5'-triphosphate deaminase proteins (3.5.4.13 from EC).; GO: 0008829 dCTP deaminase activity; PDB: 2R9Q_C.
Probab=99.70 E-value=1.3e-15 Score=131.55 Aligned_cols=170 Identities=18% Similarity=0.322 Sum_probs=96.1
Q ss_pred ccCCHHHHHHHHHhCCCcCCCCcCccccccccceeecCcceeeEEeeeC--CeEEEEec-CCceeecCCCCC---C-cce
Q psy9404 2 TIKSDNWIHNMAKYHGMIEPFVPHQVREINSRKIVSYGISSYGYDIRCA--NEFKIFTN-INSTIIDPKNFD---N-KLF 74 (188)
Q Consensus 2 miLsd~~I~~~~~~~~~I~Pf~~~~i~pa~~~~~~~~~~~~~s~DlrLg--~~~~~~~~-~~~~~id~~~~~---~-~~~ 74 (188)
..|+|.+++++.++..+++. +..++ . |+.- |+||+.. +.+.-|+. .+.++||.++.. . +.|
T Consensus 170 ~~l~d~~l~~lh~~~~lv~~--~~~~~--~-------g~~~-svdL~~~~~~~lvGyRak~htgviD~d~~~~~~~~dfW 237 (364)
T PF06559_consen 170 AVLSDAELRALHAAEPLVDG--PAVID--D-------GLAL-SVDLSGEGGDGLVGYRAKRHTGVIDVDKIGAYDPEDFW 237 (364)
T ss_dssp -B--HHHHHHHHHHS-SBSS----B-------------EEE-EB--S-CTTTTEEEEEE-SS---EETTSGGGS-GGGTE
T ss_pred ccCCHHHHHHhhhcCccccC--CcccC--C-------ceEE-EEEcCCCCCCCceEeecCCCCCcEeccccCCCChHHcC
Confidence 36899999999987777655 33333 1 2222 8899986 34666765 356789987642 2 344
Q ss_pred EEe---cCceEEECCCCEEEEEeeeEEEcCCCeEEEEEccccccccCeE-e-ecceeCCCC-------ce-EEEEEEEeC
Q psy9404 75 VDF---VGDVCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYARCGII-V-NVTPFEPEW-------EG-YVTLEFSNT 141 (188)
Q Consensus 75 ~~~---~~~~~~l~Pg~~~lv~T~E~i~lP~~~~~~i~~RSsl~R~Gl~-v-~~t~iDpGy-------~G-~i~l~i~N~ 141 (188)
+.+ .+..++|.||+||+..+.|.|.+|++++|.+.|=- +..|-+ + .+++.|||| .| +-.||+..+
T Consensus 238 epi~~~~~~~liLdP~eFYil~Sre~v~iPp~~aAEM~p~~--~~vGEfRvHYAGFFDPGFG~~~agg~Gsr~VLEVR~h 315 (364)
T PF06559_consen 238 EPIYSRGGRELILDPGEFYILASREAVHIPPDYAAEMVPFD--PLVGEFRVHYAGFFDPGFGHAEAGGAGSRAVLEVRSH 315 (364)
T ss_dssp EEEEE-SSSEEEE-TT--EEEEEEEEE-B-TTEEEEEEE-G--GGTTTEEEES--EE-TTTT-S-TTSS-EEEEEEEEES
T ss_pred cccccCCCCeEEECCcceEEEeecccccCChhHhhhccccc--cccCceEEeeccccCCCCCcccccCCCceEEEEEecC
Confidence 444 24569999999999999999999999999999854 455543 4 568899999 33 678999985
Q ss_pred CCCCEEEeCCCeEEEEEEeeccccccccccCC-CcccCCCCCCCCCC
Q psy9404 142 TPLPAKIYSEEGCAQVLFFESDETCKTSYKDR-NGKYQGQTGINLPK 187 (188)
Q Consensus 142 ~~~~i~i~~G~riaQlvF~~~~~~~~~~Y~~~-~GkYq~~~~~~~s~ 187 (188)
+.|+.|+.|+.|++|||.++...++..|+.. ..+||+| |.+.||
T Consensus 316 -evPF~lehGQ~vgrLvyE~m~~~P~~lYG~~~gSnYq~Q-gLkLsK 360 (364)
T PF06559_consen 316 -EVPFILEHGQIVGRLVYERMAERPERLYGAGIGSNYQGQ-GLKLSK 360 (364)
T ss_dssp -SS-EEEETT-EEEEEEEEEBSS----TTSS----------------
T ss_pred -CCCeeeeCCcEEEEEEehhhccCccccccccccccchhh-hhhhhh
Confidence 6799999999999999999999999999864 5799999 888876
No 22
>PHA03124 dUTPase; Provisional
Probab=99.69 E-value=2.4e-16 Score=137.40 Aligned_cols=79 Identities=16% Similarity=0.278 Sum_probs=73.9
Q ss_pred eEEECCCCEEEEEeeeEEEcCCCeEEEEEccccccccCeEeec-ceeCCCCceEEEEEEEeCCCCCEEEeCCCeEEEEEE
Q psy9404 81 VCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYARCGIIVNV-TPFEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVLF 159 (188)
Q Consensus 81 ~~~l~Pg~~~lv~T~E~i~lP~~~~~~i~~RSsl~R~Gl~v~~-t~iDpGy~G~i~l~i~N~~~~~i~i~~G~riaQlvF 159 (188)
.++|+||+..+|.|...+.+|+++++++.+|||++.+|+.+.. ++||++| +.+.++|.++.++.|++|+|||||||
T Consensus 300 DvvI~PGEt~lIpTGIaIeIP~G~~glI~pRSGLAlKGILV~~~GVIDSDY---I~ViL~Nlsdep~tI~kGDRIAQLVI 376 (418)
T PHA03124 300 DCTILPGGSTRIILPQKLACGKFRAAFILGRSSMNLKGLLVDPEHVQDDDW---ISFNITNIRDAAAFFHAGDRIAQLIA 376 (418)
T ss_pred CeEECCCCeEEEECCEEEecCCCeEEEEEeccccccCCeEeCCCceECCCc---EEEEEEECCCCCEEECCCCEEEEEEE
Confidence 5889999999999999999999999999999999999998763 5799999 88999999999999999999999999
Q ss_pred eec
Q psy9404 160 FES 162 (188)
Q Consensus 160 ~~~ 162 (188)
.+.
T Consensus 377 lP~ 379 (418)
T PHA03124 377 LED 379 (418)
T ss_pred eec
Confidence 973
No 23
>PHA03126 dUTPase; Provisional
Probab=99.67 E-value=3.3e-16 Score=134.48 Aligned_cols=84 Identities=20% Similarity=0.220 Sum_probs=76.7
Q ss_pred ceEEECCCCEEEEEeeeEEEcC-CCeEEEEEccccccccCeEeecceeCCCCceEEEEEEEeCCCCCEEEeCCCeEEEEE
Q psy9404 80 DVCIIPPNSFVLARTIEYFRIP-RKILTMCIGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVL 158 (188)
Q Consensus 80 ~~~~l~Pg~~~lv~T~E~i~lP-~~~~~~i~~RSsl~R~Gl~v~~t~iDpGy~G~i~l~i~N~~~~~i~i~~G~riaQlv 158 (188)
+.++|+||+.++|.|+..+.+| +++.++|.+|||++.+|+.+.++.||.| +++.+.++|++++++.|++|+||||||
T Consensus 186 edvvI~Pge~~lV~TGIai~ip~~g~~~~I~pRSGLA~KGL~V~~g~id~G--eeI~V~L~N~g~e~~~I~kGDRIAQLV 263 (326)
T PHA03126 186 TDATIEPDESHFVDLPIVFASSNPAVTPCIFGRSSMNRRGLIVLPTRWVAG--RTCCFFILNVNKYPVSITKGQRVAQLL 263 (326)
T ss_pred CCcEECCCCEEEEEcCeEEEcCCCCeEEEEeCccccccCCeEecCcceecC--CeEEEEEEeCCCCCEEECCCCEEEEEE
Confidence 3589999999999999999998 5999999999999999999988888888 478999999999999999999999999
Q ss_pred Eeecccc
Q psy9404 159 FFESDET 165 (188)
Q Consensus 159 F~~~~~~ 165 (188)
|+....+
T Consensus 264 Im~~~~~ 270 (326)
T PHA03126 264 LTEDIDD 270 (326)
T ss_pred Ecccchh
Confidence 9988543
No 24
>PHA03131 dUTPase; Provisional
Probab=99.63 E-value=5e-15 Score=126.93 Aligned_cols=102 Identities=16% Similarity=0.203 Sum_probs=86.2
Q ss_pred CceEEECCCCEEEEEeeeEEEcCCCeEEEEEccccccccCeEeecceeCCCCceEEEEEEEeCCCCCEEEeCCCeEEEEE
Q psy9404 79 GDVCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVL 158 (188)
Q Consensus 79 ~~~~~l~Pg~~~lv~T~E~i~lP~~~~~~i~~RSsl~R~Gl~v~~t~iDpGy~G~i~l~i~N~~~~~i~i~~G~riaQlv 158 (188)
.+.++|+||+..+|.|+.++.+|+++++.+.++++ +. +.++.+.|||||+|+|.+.+.|.++.++.|++|+|+|||+
T Consensus 33 ~~~i~I~Pge~~lV~TGi~i~iP~g~~~~i~gla~--K~-i~~~~GvIDsdYrGEI~V~l~N~~~~~~~I~~Gd~~~qlv 109 (286)
T PHA03131 33 KTPILVRPGEPTVVPLGLYIRRPPGFAFILWGSTS--KN-VTCHTGLIDPGYRGELKLILLNKTKYNVTLRPGELKVSLL 109 (286)
T ss_pred CCCEEECCCCEEEEeCCeEEEcCCCEEEEEeeccc--Cc-EEccceeECCCCCcceEEEEEeCCCCCEEECCCCEEEEEE
Confidence 45689999999999999999999999999997653 33 7777888999999999999999999999999999999999
Q ss_pred EeeccccccccccCC-CcccCCCCCC
Q psy9404 159 FFESDETCKTSYKDR-NGKYQGQTGI 183 (188)
Q Consensus 159 F~~~~~~~~~~Y~~~-~GkYq~~~~~ 183 (188)
|+++..+....|..- -=+|.+..|.
T Consensus 110 ~~~~~~p~~~~v~~l~~P~~~~dAG~ 135 (286)
T PHA03131 110 AFTYATPILTDDSLLNPPQYPDDAGF 135 (286)
T ss_pred EEEeecCceEeccccCCCCccccCCc
Confidence 999998766666432 2356555443
No 25
>PHA03130 dUTPase; Provisional
Probab=99.60 E-value=4.8e-15 Score=128.14 Aligned_cols=82 Identities=21% Similarity=0.276 Sum_probs=73.0
Q ss_pred ceEEECCCCEEEEEeeeEEEcCC-CeEE-EEEccccccccCeEeecceeCCCCceEE-EEEEEeCCCCCEEEeCCCeEEE
Q psy9404 80 DVCIIPPNSFVLARTIEYFRIPR-KILT-MCIGKSTYARCGIIVNVTPFEPEWEGYV-TLEFSNTTPLPAKIYSEEGCAQ 156 (188)
Q Consensus 80 ~~~~l~Pg~~~lv~T~E~i~lP~-~~~~-~i~~RSsl~R~Gl~v~~t~iDpGy~G~i-~l~i~N~~~~~i~i~~G~riaQ 156 (188)
+.++|+||+..+|.|...+.+|+ ++.+ +|.+|||++.+|+.+.++.||+ |++ .+.|+|+++++++|++|+||||
T Consensus 222 edVvI~PGet~lV~TGLaIeIP~~G~~g~~I~PRSGLA~KGI~V~pG~id~---GEI~~ViL~N~g~ep~tIekGDRIAQ 298 (368)
T PHA03130 222 KRVEVPAGGTVVIQPSLRVLLAAGGPEAYYVLGRSSLNARGVLVTPTRWLP---GRQCAFSVHNITGAPVTLEAGSKVAQ 298 (368)
T ss_pred CCeEECCCCEEEEcCCeEEEcCCCCceEEEEeCccchhhCCeeecccEEcc---CCEEEEEEEECCCCCEEECCCCEEEE
Confidence 46899999999999999999985 6666 9999999998999988787876 766 5889999999999999999999
Q ss_pred EEEeeccc
Q psy9404 157 VLFFESDE 164 (188)
Q Consensus 157 lvF~~~~~ 164 (188)
|||.+-+.
T Consensus 299 LVI~~~~~ 306 (368)
T PHA03130 299 LLVAGSDA 306 (368)
T ss_pred EEEeeccc
Confidence 99988754
No 26
>PHA03127 dUTPase; Provisional
Probab=99.57 E-value=1e-14 Score=125.98 Aligned_cols=81 Identities=20% Similarity=0.254 Sum_probs=69.8
Q ss_pred ceEEECCCCEEEEEeeeEEEc-CCCeEEEEEccccccccCeEeecceeCCCCceEEEEEEEeCCCCCEEEeCCCeEEEEE
Q psy9404 80 DVCIIPPNSFVLARTIEYFRI-PRKILTMCIGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVL 158 (188)
Q Consensus 80 ~~~~l~Pg~~~lv~T~E~i~l-P~~~~~~i~~RSsl~R~Gl~v~~t~iDpGy~G~i~l~i~N~~~~~i~i~~G~riaQlv 158 (188)
+.++|+||+..++.+...... +..++++|.+|||++.+|+.+.++.||+|| ++.+.++|++++++.|++|+||||||
T Consensus 183 edvvI~Pge~~~V~lpv~~~~~~~~~~~~I~pRSGLA~KGIiV~~gvID~G~--ei~V~L~N~~~e~~~I~kGDRIAQLV 260 (322)
T PHA03127 183 YTAVLAPGENLHVRLPVAYAAGAHAAAPYVFGRSSLNLRGIVVLPTAWPPGE--PCRFVIRNVTQEPVVAAAGQRVAQLL 260 (322)
T ss_pred CCeEECCCCEEEEECCCcccCCCccceEEEEccCCcccCCEEecCccCcCCC--eEEEEEEeCCCCCEEECCCCEEEEEE
Confidence 468999999999987765432 334478999999999889999888999887 67789999999999999999999999
Q ss_pred Eeec
Q psy9404 159 FFES 162 (188)
Q Consensus 159 F~~~ 162 (188)
|.+.
T Consensus 261 f~~~ 264 (322)
T PHA03127 261 LLEE 264 (322)
T ss_pred Eccc
Confidence 9976
No 27
>PHA03129 dUTPase; Provisional
Probab=99.54 E-value=6e-14 Score=124.47 Aligned_cols=82 Identities=21% Similarity=0.291 Sum_probs=72.3
Q ss_pred ceEEECCCCEEEEEeeeEEE-cCCCeEEEEEccccccccCeEeecceeCCCCceEEEEEEEeCCCCCEEEeCCCeEEEEE
Q psy9404 80 DVCIIPPNSFVLARTIEYFR-IPRKILTMCIGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVL 158 (188)
Q Consensus 80 ~~~~l~Pg~~~lv~T~E~i~-lP~~~~~~i~~RSsl~R~Gl~v~~t~iDpGy~G~i~l~i~N~~~~~i~i~~G~riaQlv 158 (188)
+.++|+||+..++.+...+. +|+++.|+|.+|||++.+|+.+..+.||.| +++.+.++|.+++++.|++|+||||||
T Consensus 296 edvvI~Pge~~~Iai~i~~~~iP~G~~g~I~pRSGLA~KGIiVl~g~id~G--eeI~V~L~N~g~e~v~I~kGDRIAQLV 373 (436)
T PHA03129 296 RDIELEPLSSTTIKIQQRYNCKDSSVIPCIFGRSSMNLRGLIVLPSRWLPN--SWLTLTICNLTEKTVFIKAGDRIAQLL 373 (436)
T ss_pred CCeEECCCCEEEEEEecccccCCCCeEEEEECccccccCCeEeccccEeCC--CeEEEEEEeCCCCCeEeCCCCEEEEEE
Confidence 35889999988876665444 699999999999999999999888888877 469999999999999999999999999
Q ss_pred Eeecc
Q psy9404 159 FFESD 163 (188)
Q Consensus 159 F~~~~ 163 (188)
|.+.+
T Consensus 374 Ii~~~ 378 (436)
T PHA03129 374 LVDQD 378 (436)
T ss_pred Eeecc
Confidence 99876
No 28
>KOG3370|consensus
Probab=99.46 E-value=1.7e-13 Score=104.42 Aligned_cols=84 Identities=15% Similarity=0.125 Sum_probs=77.5
Q ss_pred EEECCCCEEEEEeeeEEEcCCCeEEEEEcccccc-ccCeEeecceeCCCCceEEEEEEEeCCCCCEEEeCCCeEEEEEEe
Q psy9404 82 CIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYA-RCGIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVLFF 160 (188)
Q Consensus 82 ~~l~Pg~~~lv~T~E~i~lP~~~~~~i~~RSsl~-R~Gl~v~~t~iDpGy~G~i~l~i~N~~~~~i~i~~G~riaQlvF~ 160 (188)
..++|..-.+|.|...+.+|..+.+.+.+||.|| +.++.+-.+.|||+|+|++.+.++|+++..+.+++|+|||||+++
T Consensus 33 ~~vpa~gk~~V~td~q~~vP~g~ygRvaprsglA~k~~I~~gagvVd~dyrgeV~v~LfN~~~~~F~~k~Gdriaqli~~ 112 (140)
T KOG3370|consen 33 GTVPARGKAVVDTDLQIAVPSGYYGRVAPRSGLAWKHFIDVGAGVVDPDYRGEVGVLLFNHSDRDFEYKKGDRIAQLIVE 112 (140)
T ss_pred cccCcccceeccccceeecCcceeeeecccccchhhccccccCceecccccceeEEEEecCCCcceeeecCCcceeeEEE
Confidence 4467777789999999999999999999999997 578888889999999999999999999999999999999999999
Q ss_pred ecccc
Q psy9404 161 ESDET 165 (188)
Q Consensus 161 ~~~~~ 165 (188)
++-.+
T Consensus 113 ~i~~~ 117 (140)
T KOG3370|consen 113 KIVTP 117 (140)
T ss_pred ecCCC
Confidence 98763
No 29
>PHA03129 dUTPase; Provisional
Probab=99.45 E-value=2.9e-13 Score=120.11 Aligned_cols=74 Identities=9% Similarity=0.035 Sum_probs=69.0
Q ss_pred EEEEEeeeEEEcCCCeEEEEE------ccccccccCeEeecceeCCCCceEEEEEEEeCCCCCEEEeCCCeEEEEEEeec
Q psy9404 89 FVLARTIEYFRIPRKILTMCI------GKSTYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVLFFES 162 (188)
Q Consensus 89 ~~lv~T~E~i~lP~~~~~~i~------~RSsl~R~Gl~v~~t~iDpGy~G~i~l~i~N~~~~~i~i~~G~riaQlvF~~~ 162 (188)
..++.|+..+.+|+++++++. |||+ +-+|+.+.++.||+||+|+|.+.++|. .+++|.+|+||||||+.++
T Consensus 77 ~~lV~TGlaiaiP~Gy~~~V~~~~~~~PRSG-a~kgI~v~NGvIDSdYRGEIkviL~N~--~~~tI~~GdRIAQLVi~~v 153 (436)
T PHA03129 77 ICLLDLGVRVAVPQNYVVVLAKLTDPDPTSR-GIPVIRVANGVIDSGYRGTIRAVLFYE--KSCTIPKNGLAIRLALVKL 153 (436)
T ss_pred EEEECCceEEecCCCEEEEEEecCCCCCCcc-CcCceEeccccccCCCCcEEEEEEEcC--CCEEeCCCCEEEEEEEEEe
Confidence 459999999999999999999 9999 777999888999999999999999998 6999999999999999998
Q ss_pred ccc
Q psy9404 163 DET 165 (188)
Q Consensus 163 ~~~ 165 (188)
..+
T Consensus 154 ~~~ 156 (436)
T PHA03129 154 ASP 156 (436)
T ss_pred eec
Confidence 854
No 30
>PHA03128 dUTPase; Provisional
Probab=99.04 E-value=1.6e-09 Score=94.32 Aligned_cols=81 Identities=20% Similarity=0.252 Sum_probs=67.8
Q ss_pred CceEEECCCCEEEEEeeeEEEcCCCeEEEEEccccccccCeEeecceeCCCCceEE-EEEEEeCCCCCEEEeCCCeEEEE
Q psy9404 79 GDVCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYARCGIIVNVTPFEPEWEGYV-TLEFSNTTPLPAKIYSEEGCAQV 157 (188)
Q Consensus 79 ~~~~~l~Pg~~~lv~T~E~i~lP~~~~~~i~~RSsl~R~Gl~v~~t~iDpGy~G~i-~l~i~N~~~~~i~i~~G~riaQl 157 (188)
...+.|+|+....+.-...-.-++.++|+|.+||.|+.+||.|..+.|-+| .+ .+.|+|+++..+.|.+|+||||+
T Consensus 217 ~~~l~I~P~~t~tv~fda~p~~~p~~~aLI~GrsgLA~kGLlV~PtiW~~~---tlp~lki~N~T~~Tv~i~agsrIAQV 293 (376)
T PHA03128 217 RQTIIIQPGHTQTVYFDAAYVHAPGICALIVGTRQFSQSDLIIRPTIWLPG---TVATVTVVNTSSTTVCISPTTTVAKV 293 (376)
T ss_pred CCcEEECCCCcEEEEEeccCCCCCcceeEEEcCchhhhCCcEEeeeEeCCC---CcceEEEEeCCCceEEecCCCEEEEE
Confidence 457889999876555443333368999999999999999999999987774 45 89999999999999999999999
Q ss_pred EEeec
Q psy9404 158 LFFES 162 (188)
Q Consensus 158 vF~~~ 162 (188)
||..-
T Consensus 294 VFth~ 298 (376)
T PHA03128 294 VFTTR 298 (376)
T ss_pred EEeeC
Confidence 99764
No 31
>PHA03127 dUTPase; Provisional
Probab=98.91 E-value=6.1e-09 Score=90.33 Aligned_cols=74 Identities=9% Similarity=-0.102 Sum_probs=64.1
Q ss_pred EEEEEeeeEEEcCCCeEEEEEc-ccccc-ccCeEeecceeCCCCceEEEEEEEeCCCCCEEEeCCCeEEEEEEeecc
Q psy9404 89 FVLARTIEYFRIPRKILTMCIG-KSTYA-RCGIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVLFFESD 163 (188)
Q Consensus 89 ~~lv~T~E~i~lP~~~~~~i~~-RSsl~-R~Gl~v~~t~iDpGy~G~i~l~i~N~~~~~i~i~~G~riaQlvF~~~~ 163 (188)
..++.|+.++.+|+++++++.+ ||+++ +.|+.++++.||+||+|+|.+.+.|.+. ...|.+|.-=-+|.|.++.
T Consensus 63 ~~lV~tGl~i~~P~Gy~~~v~p~RSGla~k~gi~~~nG~IDsgYRGei~vil~N~~~-~~~~~pg~l~l~l~l~~~~ 138 (322)
T PHA03127 63 SRLVNLGLRAAAPGGYAILMSQMCSGQTPSRPPAVAVGIVDSGYRGILRAIVWAPPC-IETIPEAGLALRLTLARLA 138 (322)
T ss_pred EEEecCceEEecCCCEEEEEeeccCCccccCCcccccCCCCCCCCceEEEEEEeCCC-CeeecCCceEEEEEEeeee
Confidence 3589999999999999999999 99997 5699998899999999999999999998 9999999544455554443
No 32
>PHA03125 dUTPase; Provisional
Probab=98.83 E-value=5.2e-08 Score=84.82 Aligned_cols=82 Identities=13% Similarity=0.248 Sum_probs=67.4
Q ss_pred cCceEEECCCCEEEEEeeeEEEcCCCeEEEEEccccccccCeEeecceeCCCCceEE-EEEEEeCCCCCEEEeCCCeEEE
Q psy9404 78 VGDVCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYARCGIIVNVTPFEPEWEGYV-TLEFSNTTPLPAKIYSEEGCAQ 156 (188)
Q Consensus 78 ~~~~~~l~Pg~~~lv~T~E~i~lP~~~~~~i~~RSsl~R~Gl~v~~t~iDpGy~G~i-~l~i~N~~~~~i~i~~G~riaQ 156 (188)
....+.|+|+.+......-...-|+..+|++.+||.++.+||.|.++.|-|| .+ .+.++|+++..+.+.+|+||||
T Consensus 260 l~r~l~I~P~~~~~~~f~~a~~CPp~~~aLI~GrsgLA~kGLlV~PtiW~~~---tlp~lki~N~T~~Tv~i~AgsrIAQ 336 (376)
T PHA03125 260 TNREFIVKPNSYTIQNFDAMYVCADELKALMIPSKEILKLGLLIETYIWNKD---TIPSIKIFNSTRKTIYIPTGICIAR 336 (376)
T ss_pred eCccEEECCCccceeeeEEEeeCCCcceeEEEcCchhhhCCcEEeeeEeCCC---CcceEEEEecCCceEEecCCCEEEE
Confidence 3456999999544433333445688889999999999999999999988774 45 8899999999999999999999
Q ss_pred EEEeec
Q psy9404 157 VLFFES 162 (188)
Q Consensus 157 lvF~~~ 162 (188)
+||...
T Consensus 337 VVFth~ 342 (376)
T PHA03125 337 IIFTCG 342 (376)
T ss_pred EEEEeC
Confidence 999763
No 33
>PHA03128 dUTPase; Provisional
Probab=98.19 E-value=1.4e-05 Score=69.98 Aligned_cols=84 Identities=10% Similarity=0.025 Sum_probs=75.6
Q ss_pred CceEEECCCCEEEEEeeeEEEcCCCeEEEEEccccccccCeEeecceeCCCCceEEEEEEEeCCCCCEEEeCCCeEEEEE
Q psy9404 79 GDVCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVL 158 (188)
Q Consensus 79 ~~~~~l~Pg~~~lv~T~E~i~lP~~~~~~i~~RSsl~R~Gl~v~~t~iDpGy~G~i~l~i~N~~~~~i~i~~G~riaQlv 158 (188)
..-++|.|++...+.++.++.+|++++|++..+++- .++..+.+.|||||+| +.|.+.|.+..++.|.+|+-=..|.
T Consensus 112 k~iI~V~p~~~~Iv~LGI~L~iPeG~fgi~L~~~s~--~~v~ChtgLIdpGy~g-ikLiL~N~Ts~~v~L~PGeLevsI~ 188 (376)
T PHA03128 112 KHIIWLSRERKTPTSLGISLYIPEGFFGITFYKCLD--AQFVCMPELIEPGLQN-PQMDVVNLNYTFQAIFPGTIEGDIG 188 (376)
T ss_pred ceeEEEeCCCceEEcceeEEecCCCeEEEEEecCCC--CCeEecccccCCCCcc-eEEEEEeCCCccceecCCceEEEEE
Confidence 346889999999999999999999999999988875 7788888899999999 9999999999999999999888888
Q ss_pred Eeecccc
Q psy9404 159 FFESDET 165 (188)
Q Consensus 159 F~~~~~~ 165 (188)
+|...-+
T Consensus 189 aFpy~vP 195 (376)
T PHA03128 189 VFPCFCP 195 (376)
T ss_pred EEEccCC
Confidence 8887755
No 34
>PHA03125 dUTPase; Provisional
Probab=97.93 E-value=9.7e-05 Score=64.69 Aligned_cols=83 Identities=10% Similarity=0.079 Sum_probs=75.1
Q ss_pred CceEEECCCCEEEEEeeeEEEcCCCeEEEEEccccccccCeEeecceeCCCCceEEEEEEEeCCCCCEEEeCCCeEEEEE
Q psy9404 79 GDVCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVL 158 (188)
Q Consensus 79 ~~~~~l~Pg~~~lv~T~E~i~lP~~~~~~i~~RSsl~R~Gl~v~~t~iDpGy~G~i~l~i~N~~~~~i~i~~G~riaQlv 158 (188)
..-+++.|++...+..+.++.+|+++++.+.++++ --++..+.+.|||| |.+.|.+.|.+..++.|.||+-=..|.
T Consensus 158 k~iI~V~p~r~~IvpLGI~L~iPeG~fgIL~gkss--~v~cvchtgLIdpG--geikLiL~N~Ts~~v~L~PGeLeVsI~ 233 (376)
T PHA03125 158 RELIWVPHDQVRIVKLDISLNIPDGFFGVITGHSN--DVFCECVTEIITDE--TDISVFLMNLSEHSLMLLPGDVEFSIN 233 (376)
T ss_pred ceeEEEeCCCceEEeceEEEecCCCeEEEEECCCC--CCceeecceeECCC--CcEEEEEEeCCCCcceecCCceEEEEE
Confidence 35688999999999999999999999999999999 66666787889999 999999999999999999999888888
Q ss_pred Eeecccc
Q psy9404 159 FFESDET 165 (188)
Q Consensus 159 F~~~~~~ 165 (188)
+|...-|
T Consensus 234 aFpy~vP 240 (376)
T PHA03125 234 FLPCYIP 240 (376)
T ss_pred EEEccCC
Confidence 8887765
No 35
>PHA03126 dUTPase; Provisional
Probab=97.62 E-value=0.00072 Score=58.87 Aligned_cols=80 Identities=6% Similarity=-0.060 Sum_probs=64.5
Q ss_pred EEEEeeeEEEcCCCeEEEEEccccc---------ccc--------CeEeecceeCCCCceEEEEEEEeCCCCCEEEeCCC
Q psy9404 90 VLARTIEYFRIPRKILTMCIGKSTY---------ARC--------GIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYSEE 152 (188)
Q Consensus 90 ~lv~T~E~i~lP~~~~~~i~~RSsl---------~R~--------Gl~v~~t~iDpGy~G~i~l~i~N~~~~~i~i~~G~ 152 (188)
.++.++.++.=|++++-++...+++ .+. -.+.|.+.|||||+|.|.+. .|..+....|.+|+
T Consensus 54 ~~~~lGv~~~~~~gyA~~L~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~GlID~GYrG~lk~i-~~~~~~~~~i~~g~ 132 (326)
T PHA03126 54 VLTDVGVRVACSSGYAIVLTQISGLLPVEPEPGNFSNVTFPGNSAKYYTAYGIVDSGYRGVVKAV-QFAPGVNTSVPPGQ 132 (326)
T ss_pred EEecceeEEeCCCCeEEEEEeccCCCccccccccccccccccccccceeeeceECCCcceEEEeE-eccCCCceeecCCc
Confidence 3677888888899999999888864 221 12668888999999999999 78888889999999
Q ss_pred eEEEEEEeeccccccccc
Q psy9404 153 GCAQVLFFESDETCKTSY 170 (188)
Q Consensus 153 riaQlvF~~~~~~~~~~Y 170 (188)
-=.+|+-+++..+....+
T Consensus 133 L~v~L~~~~~~t~~~~~~ 150 (326)
T PHA03126 133 MSLGLVLVKLATETIHVT 150 (326)
T ss_pred eEEEEEEEEeecceeecc
Confidence 888999989887655444
No 36
>PF04797 Herpes_ORF11: Herpesvirus dUTPase protein; InterPro: IPR006882 This family of proteins are found in Herpesvirus. This family includes proteins called ORF10 and ORF11 amongst others.
Probab=96.20 E-value=0.065 Score=47.92 Aligned_cols=79 Identities=18% Similarity=0.261 Sum_probs=52.4
Q ss_pred CceEEECCCCEEEEEeeeEEEcCCC--eEEEEEccccccccC-eEeecceeCCCCceEEEEEEEeCCCCCEEEeCCCeEE
Q psy9404 79 GDVCIIPPNSFVLARTIEYFRIPRK--ILTMCIGKSTYARCG-IIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYSEEGCA 155 (188)
Q Consensus 79 ~~~~~l~Pg~~~lv~T~E~i~lP~~--~~~~i~~RSsl~R~G-l~v~~t~iDpGy~G~i~l~i~N~~~~~i~i~~G~ria 155 (188)
+...+|+||+..-+.-.-.+..+.. ..+++. .+.+... +.+..+.|-|| +.+.|.|+|.++.+++|++|+++|
T Consensus 270 ~~~~~IpP~es~~v~~~~~y~~~~~~~~~~~~I--~~~~~~~~~~i~p~~W~P~--~~~~ltv~N~s~~p~~I~~gt~la 345 (379)
T PF04797_consen 270 GPEKTIPPGESTKVKYNNMYEQGNPSKITAFFI--CGLNDNSDFVISPCEWLPG--SPLQLTVHNPSNFPITISRGTPLA 345 (379)
T ss_pred CCceEECCCCEEEEEEccEEEecCCCccceEEE--EcCCCCceEEEeeeEECCC--CceEEEEEcCCCceEEecCCCEEE
Confidence 5567778887776665555554322 222111 1233332 33445556666 568888999999999999999999
Q ss_pred EEEEee
Q psy9404 156 QVLFFE 161 (188)
Q Consensus 156 QlvF~~ 161 (188)
+-+|+.
T Consensus 346 ~Aif~~ 351 (379)
T PF04797_consen 346 QAIFIY 351 (379)
T ss_pred EEEEEe
Confidence 999995
No 37
>PHA03365 hypothetical protein; Provisional
Probab=96.00 E-value=0.089 Score=47.44 Aligned_cols=82 Identities=21% Similarity=0.325 Sum_probs=60.7
Q ss_pred CceEEECCCCEEEEEeeeEE--EcCCCeEEEEEccccccccCeEeecceeCCCCceEEEEEEEeCCCCCEEEeCCCeEEE
Q psy9404 79 GDVCIIPPNSFVLARTIEYF--RIPRKILTMCIGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQ 156 (188)
Q Consensus 79 ~~~~~l~Pg~~~lv~T~E~i--~lP~~~~~~i~~RSsl~R~Gl~v~~t~iDpGy~G~i~l~i~N~~~~~i~i~~G~riaQ 156 (188)
+..+.|+|++...|+.+-+. .+..++.|.|..-.+ ...+.+..+-|-||- ...+.+.|.++.|++|..|+.+||
T Consensus 291 Gp~V~IP~~~~t~V~YnN~Y~~~~~~~iTAiI~n~~~--~~~f~i~~ceW~p~~--ta~I~V~N~S~fp~~i~~Gt~lg~ 366 (419)
T PHA03365 291 GPPVIIPPNCSTVVEYNNTYYSPLSLKITAIIVNHET--NPDFYIYDCEWKPGQ--TAKLMVTNTSNFPITISTGTHLGQ 366 (419)
T ss_pred CCcEEeCCCceEEEEeCCEEEeccCCceEEEEEcCCC--CCcEEEEeeecCCCC--eeEEEEEecCCCcEEeeCCCEeeE
Confidence 55688888887776655544 456778888885544 344556656566653 466788999999999999999999
Q ss_pred EEEeeccc
Q psy9404 157 VLFFESDE 164 (188)
Q Consensus 157 lvF~~~~~ 164 (188)
.+|+-...
T Consensus 367 A~Fi~A~k 374 (419)
T PHA03365 367 AIFILAPK 374 (419)
T ss_pred EEEEEccc
Confidence 99987543
No 38
>PHA03123 dUTPase; Provisional
Probab=95.35 E-value=0.14 Score=45.93 Aligned_cols=79 Identities=8% Similarity=-0.012 Sum_probs=57.4
Q ss_pred CCCEE--EEEeeeEEEcCCCeEEEEEcc-cc-ccccC-eEeecceeCCCCceEEEEEEEeCCCCCEEEeCCCeEEEEEEe
Q psy9404 86 PNSFV--LARTIEYFRIPRKILTMCIGK-ST-YARCG-IIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVLFF 160 (188)
Q Consensus 86 Pg~~~--lv~T~E~i~lP~~~~~~i~~R-Ss-l~R~G-l~v~~t~iDpGy~G~i~l~i~N~~~~~i~i~~G~riaQlvF~ 160 (188)
+|++| ++.++.++..|++++-.+.-= +| ....| +.+.+++||+||+|.|...++-.. .-..|.||.--.+|...
T Consensus 80 ~~~~y~~~ldlgvr~A~p~~Yavll~q~~~~~~~~~~~~~iAnGviDsGYRG~i~avl~~~~-~~t~ipp~~l~i~L~lv 158 (402)
T PHA03123 80 CGDFYIQQLDLGVKAAPPNEYALLLIQCIDSALADEDDFFIANGVIDAGYRGRICALLYYKK-GVTIILPGDLMIYLFPV 158 (402)
T ss_pred CCceEEEEeccceeeecCCCeEEEEEeecCCCCCCCcceEEEeeeeccCccceEEEEEEecC-cceeeCCCceEEEEEee
Confidence 34444 667788888899988766543 33 23344 457789999999999998888643 23449999999999999
Q ss_pred ecccc
Q psy9404 161 ESDET 165 (188)
Q Consensus 161 ~~~~~ 165 (188)
|+...
T Consensus 159 kL~~~ 163 (402)
T PHA03123 159 KLAQS 163 (402)
T ss_pred eeecc
Confidence 88753
No 39
>PHA03130 dUTPase; Provisional
Probab=95.13 E-value=0.14 Score=45.30 Aligned_cols=74 Identities=8% Similarity=0.009 Sum_probs=57.2
Q ss_pred EEEEeeeEEEcCCCeEEEEE-ccccccccCeEeecceeCCCCceEEEEEEEeCCCCCEEEeCCCeEEEEEEeeccccc
Q psy9404 90 VLARTIEYFRIPRKILTMCI-GKSTYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVLFFESDETC 166 (188)
Q Consensus 90 ~lv~T~E~i~lP~~~~~~i~-~RSsl~R~Gl~v~~t~iDpGy~G~i~l~i~N~~~~~i~i~~G~riaQlvF~~~~~~~ 166 (188)
.++....++.+|.++|+.+. +-+| --+-.+..+.||.||+|.+...++.. +..-.+.||.-=.+|.|.++...+
T Consensus 60 ~~v~~~lr~a~p~~~~~~~~~~~~~--~~~~~~~~g~idsgyrg~~~av~~ap-~~~~~~~pg~l~~~l~~~~~~~~~ 134 (368)
T PHA03130 60 GRVPLDLRVAMPTDFCAVVHAPPTA--GAPYRVALGLIDSGYRGTVQAVVLAP-GETRRFAPGELRVDLTFLRVSGSP 134 (368)
T ss_pred EEecCceEEecCCCeEEEEeccccC--CCCceeEEEEeccCccceEEEEEEcC-CcccccCCCceEeeeEEEEeecCC
Confidence 46777889999999999999 5444 22223345779999999988777654 346778999999999999998654
No 40
>PF05784 Herpes_UL82_83: Betaherpesvirus UL82/83 protein N terminus; InterPro: IPR008649 This family represents the N-terminal region of the UL82 and UL83 proteins from Betaherpesvirus sp., such as Human cytomegalovirus (HHV-5) (Human herpesvirus 5). As viruses are reliant upon their host cell to serve as proper environments for their replication, many have evolved mechanisms to alter intracellular conditions to suit their own needs. HHV-5 induces quiescent cells to enter the cell cycle and then arrests them in late G(1), before they enter the S phase, a cell cycle compartment that is presumably favourable for viral replication. The protein product of the HHV-5 UL82 gene, pp71, can accelerate the movement of cells through the G(1) phase of the cell cycle. This activity would help infected cells reach the late G(1) arrest point sooner and thus may stimulate the infectious cycle. pp71 also induces DNA synthesis in quiescent cells, but a pp71 mutant protein that is unable to induce quiescent cells to enter the cell cycle still retains the ability to accelerate the G(1) phase. Thus, the mechanism through which pp71 accelerates G(1) cell cycle progression appears to be distinct from the one that it employs to induce quiescent cells to exit G(0) and subsequently enter the S phase [].; GO: 0009405 pathogenesis; PDB: 3BW9_C.
Probab=93.55 E-value=0.02 Score=50.73 Aligned_cols=76 Identities=13% Similarity=0.169 Sum_probs=0.0
Q ss_pred eEEECCCCEEEEEeeeEEEcCCCeEEEEEccccccccCeEeecceeCCCCceEEEEEEEeCCCCCEEEeCCCeEEEEEEe
Q psy9404 81 VCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVLFF 160 (188)
Q Consensus 81 ~~~l~Pg~~~lv~T~E~i~lP~~~~~~i~~RSsl~R~Gl~v~~t~iDpGy~G~i~l~i~N~~~~~i~i~~G~riaQlvF~ 160 (188)
.+.|.||+.+.+...-.++-..+++|++.|+.- -|+.++.+.|.++ =.|+++|.|.+. .+.|.+++.++.+-||
T Consensus 268 ~i~l~pg~~~~v~id~~feS~~~~~~lF~Pk~i---pGlsis~~~w~~~--~~l~i~i~a~~~-~v~i~~~q~LG~lhFf 341 (348)
T PF05784_consen 268 NIHLKPGKTSHVTIDNAFESDQTYIGLFFPKDI---PGLSISCGPWMER--QPLFIEIRATGK-NVEIRYGQPLGSLHFF 341 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceecCCCCeEEEEEeeeEecCCceEEEEecccC---CCceeeeeccCCC--ceEEEEEEeccc-ceeecccceeeeEEEe
Confidence 477899999888888888887779999999854 7888887777765 369999999876 9999999999999998
Q ss_pred ec
Q psy9404 161 ES 162 (188)
Q Consensus 161 ~~ 162 (188)
+-
T Consensus 342 ~r 343 (348)
T PF05784_consen 342 PR 343 (348)
T ss_dssp --
T ss_pred ec
Confidence 74
No 41
>PF09160 FimH_man-bind: FimH, mannose binding; InterPro: IPR015243 This domain adopts a secondary structure consisting of a beta sandwich, with nine strands arranged in two sheets in a Greek key topology. It is predominantly found in bacterial mannose-specific adhesins, and is capable of binding to D-mannose []. ; PDB: 3MCY_C 1KLF_D 1QUN_L 1KIU_L 3RFZ_D 2VCO_B 1TR7_A 1UWF_A 3JWN_N.
Probab=68.21 E-value=7.9 Score=30.34 Aligned_cols=34 Identities=9% Similarity=-0.087 Sum_probs=24.3
Q ss_pred ceEEEEEEEeCCCCCEEEeCCCeEEEEEEeecccc
Q psy9404 131 EGYVTLEFSNTTPLPAKIYSEEGCAQVLFFESDET 165 (188)
Q Consensus 131 ~G~i~l~i~N~~~~~i~i~~G~riaQlvF~~~~~~ 165 (188)
-.++.|..... -..+.|++|+.||+|.|+|....
T Consensus 102 p~~LYLtp~~~-a~Gv~I~~G~~iAtl~~~k~~t~ 135 (147)
T PF09160_consen 102 PIKLYLTPVSA-AGGVVINKGDLIATLNMHKTNTY 135 (147)
T ss_dssp -EEEEEEESTT-SSEEEE-TTSEEEEEEEEEEESS
T ss_pred cEEEEEEEccC-CCcEEEeCCCEEEEEEEEEeccc
Confidence 34666666543 33699999999999999997753
No 42
>PF06284 Cytomega_UL84: Cytomegalovirus UL84 protein; InterPro: IPR010436 This family consists of several Cytomegalovirus UL84 proteins. The open reading frame UL84 of human cytomegalovirus encodes a multifunctional regulatory protein which is required for viral DNA replication and binds with high affinity to the immediate-early transactivator IE2-p86 [].
Probab=56.64 E-value=32 Score=31.63 Aligned_cols=58 Identities=24% Similarity=0.236 Sum_probs=44.3
Q ss_pred eEEEEEccccccccCeEeecceeCCCCceEEEEEEEeCCCCCEEEeCCCeEEEEEEeeccccc
Q psy9404 104 ILTMCIGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVLFFESDETC 166 (188)
Q Consensus 104 ~~~~i~~RSsl~R~Gl~v~~t~iDpGy~G~i~l~i~N~~~~~i~i~~G~riaQlvF~~~~~~~ 166 (188)
+.|++.|+ -|.|+.+.+|+|.|---=+|++...|.. +++|.+|+-++||-|.......
T Consensus 402 ~LGLFvP~---~r~~l~mpVtiWlPRTWLEi~l~~~~~~--g~tl~R~~vLG~LYFiss~ht~ 459 (530)
T PF06284_consen 402 FLGLFVPK---NRQGLKMPVTIWLPRTWLEITLVGSNEH--GVTLPRDDVLGRLYFISSKHTL 459 (530)
T ss_pred ceeEeccc---CccceeeeEEeeeccceEEEEEEeeccc--ccccccCceeeEEEEecchhhh
Confidence 44555554 4578888888899876667777777744 8999999999999998876554
No 43
>PF06088 TLP-20: Nucleopolyhedrovirus telokin-like protein-20 (TLP20); InterPro: IPR009092 The baculovirus, Autographa californica nuclear polyhedrosis virus (AcMNPV), telokin-like protein (Tlp20) lies in a region of the baculoviral genome that is expressed late in the viral replication cycle, however its function is unknown. Tlp20 was discovered using anti-telokin antibodies, telokin being the C-terminal domain of smooth-muscle myosin light-chain kinase []. Both Tlp20 and telokin display a seven-stranded antiparallel beta-barrel structure, although the 3-dimensional structures of the beta-barrels are different and there is no sequence homology between the two. Tlp20 is structurally similar to dUTPase in its fold and trimeric assembly [].; PDB: 1TUL_A.
Probab=51.89 E-value=29 Score=27.80 Aligned_cols=29 Identities=7% Similarity=0.173 Sum_probs=20.8
Q ss_pred ceEEEEEEEeCCCCCEEEeCCCeEEEEEEee
Q psy9404 131 EGYVTLEFSNTTPLPAKIYSEEGCAQVLFFE 161 (188)
Q Consensus 131 ~G~i~l~i~N~~~~~i~i~~G~riaQlvF~~ 161 (188)
.+.+...++|.. |+.|++|+-|+|++++.
T Consensus 80 ~~~ln~iLfn~k--~~~lkK~~~iF~i~~~~ 108 (169)
T PF06088_consen 80 SNGLNAILFNIK--PIVLKKGQCIFKIVYWN 108 (169)
T ss_dssp SS--EEEEEESS---EEE-TT-EEEEEEEE-
T ss_pred CCCceEEEEEec--ceeeecCceEEEEEecC
Confidence 467888999976 99999999999999998
No 44
>cd00235 TLP-20 Telokin-like protein-20 (TLP-20) domain; a baculovirus protein that shares some antigenic similarities to the smooth muscle protein telokin, a kinase-related protein
Probab=43.51 E-value=48 Score=24.66 Aligned_cols=28 Identities=7% Similarity=0.159 Sum_probs=24.0
Q ss_pred ceEEEEEEEeCCCCCEEEeCCCeEEEEEEe
Q psy9404 131 EGYVTLEFSNTTPLPAKIYSEEGCAQVLFF 160 (188)
Q Consensus 131 ~G~i~l~i~N~~~~~i~i~~G~riaQlvF~ 160 (188)
++.+...++|.. |+.|++|+.|.|++.+
T Consensus 80 ~~~i~viLfn~k--p~~lkk~~~iFki~~~ 107 (108)
T cd00235 80 SNGINVILFNKK--PIILKKGSCIFKIKYW 107 (108)
T ss_pred CCCeEEEEEEcc--ceEEEcCcEEEEEEec
Confidence 346888999966 9999999999999875
No 45
>PF05784 Herpes_UL82_83: Betaherpesvirus UL82/83 protein N terminus; InterPro: IPR008649 This family represents the N-terminal region of the UL82 and UL83 proteins from Betaherpesvirus sp., such as Human cytomegalovirus (HHV-5) (Human herpesvirus 5). As viruses are reliant upon their host cell to serve as proper environments for their replication, many have evolved mechanisms to alter intracellular conditions to suit their own needs. HHV-5 induces quiescent cells to enter the cell cycle and then arrests them in late G(1), before they enter the S phase, a cell cycle compartment that is presumably favourable for viral replication. The protein product of the HHV-5 UL82 gene, pp71, can accelerate the movement of cells through the G(1) phase of the cell cycle. This activity would help infected cells reach the late G(1) arrest point sooner and thus may stimulate the infectious cycle. pp71 also induces DNA synthesis in quiescent cells, but a pp71 mutant protein that is unable to induce quiescent cells to enter the cell cycle still retains the ability to accelerate the G(1) phase. Thus, the mechanism through which pp71 accelerates G(1) cell cycle progression appears to be distinct from the one that it employs to induce quiescent cells to exit G(0) and subsequently enter the S phase [].; GO: 0009405 pathogenesis; PDB: 3BW9_C.
Probab=40.79 E-value=9.1 Score=34.08 Aligned_cols=69 Identities=14% Similarity=0.103 Sum_probs=0.0
Q ss_pred eEEECCCCEEEEEeeeEEEcCCCeE---EEEEccccccc---cCeEeecceeCCCCceEEEEEEEeCCCCCEEEe
Q psy9404 81 VCIIPPNSFVLARTIEYFRIPRKIL---TMCIGKSTYAR---CGIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIY 149 (188)
Q Consensus 81 ~~~l~Pg~~~lv~T~E~i~lP~~~~---~~i~~RSsl~R---~Gl~v~~t~iDpGy~G~i~l~i~N~~~~~i~i~ 149 (188)
...++|+++.++.|+..|.++.-.+ +...+.|.-.. .+|.+..+.+|+.=.+++.++++|.++.++...
T Consensus 18 ~~~~~p~E~k~l~tgl~V~v~~psVicv~q~~~~~~~~~~~~~~L~vkft~~~~~~~~nl~v~V~N~s~r~l~~~ 92 (348)
T PF05784_consen 18 DTPFKPHETKILKTGLSVKVSQPSVICVTQETPSSQPPHRDDTDLQVKFTVFDGQEIDNLTVDVHNPSDRPLSPS 92 (348)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred CCccCCCcEEEEecCceEEeCCCeEEEEEeccCCCCCcccccccceeeEEEeccccccceEEEEECCCCCcCCCC
Confidence 4568999999999999999876432 33333333222 246777777887656689999999997775544
No 46
>PLN02741 riboflavin synthase
Probab=32.61 E-value=20 Score=29.22 Aligned_cols=54 Identities=11% Similarity=0.041 Sum_probs=36.7
Q ss_pred EEEcCCCeEEEEEccccccccCeEeecceeC--CCCceEE----EEEEEeCCCCCEEEeCCCeE
Q psy9404 97 YFRIPRKILTMCIGKSTYARCGIIVNVTPFE--PEWEGYV----TLEFSNTTPLPAKIYSEEGC 154 (188)
Q Consensus 97 ~i~lP~~~~~~i~~RSsl~R~Gl~v~~t~iD--pGy~G~i----~l~i~N~~~~~i~i~~G~ri 154 (188)
.+.+|+++..++.+|-|.+=.|+++...-++ .++---. |++.+|.+. +++|+++
T Consensus 122 ~i~~p~~~~~yi~~KGsIavdGvSLTV~~v~~~~~~f~v~lIP~T~~~T~l~~----~k~Gd~V 181 (194)
T PLN02741 122 KVKADPELLKYIVPKGFIAVDGTSLTVVDVDDEEGCFNFMLVPYTQQKVVIPL----KKVGDKV 181 (194)
T ss_pred EEEECHHHHcccccCcEEEEeeEEEEEEEeecCCCEEEEEEcHHHHhhccccc----CCCCCEE
Confidence 5778999999999999999999987655566 3321111 345556553 4566654
No 47
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=28.93 E-value=54 Score=19.91 Aligned_cols=16 Identities=44% Similarity=0.549 Sum_probs=12.9
Q ss_pred EEEEEeCCCCCEEEeC
Q psy9404 135 TLEFSNTTPLPAKIYS 150 (188)
Q Consensus 135 ~l~i~N~~~~~i~i~~ 150 (188)
++++.|.++.++.|..
T Consensus 1 ~F~~~N~g~~~L~I~~ 16 (45)
T PF07610_consen 1 TFEFTNTGDSPLVITD 16 (45)
T ss_pred CEEEEECCCCcEEEEE
Confidence 3688999999988864
No 48
>PF13342 Toprim_Crpt: C-terminal repeat of topoisomerase
Probab=26.49 E-value=2e+02 Score=18.99 Aligned_cols=24 Identities=13% Similarity=0.219 Sum_probs=19.7
Q ss_pred cCCHHHHHHHHHhCC--CcCCCCcCc
Q psy9404 3 IKSDNWIHNMAKYHG--MIEPFVPHQ 26 (188)
Q Consensus 3 iLsd~~I~~~~~~~~--~I~Pf~~~~ 26 (188)
-||+.++++++++|. +|..|.-..
T Consensus 15 ~lt~~~~~~Ll~~gkT~~ikGF~SK~ 40 (62)
T PF13342_consen 15 KLTDEEVKELLEKGKTGLIKGFKSKK 40 (62)
T ss_pred CCCHHHHHHHHHcCCccCccCcccCC
Confidence 489999999998875 699997644
No 49
>PHA03257 Capsid triplex subunit 2; Provisional
Probab=24.90 E-value=1.1e+02 Score=26.98 Aligned_cols=31 Identities=10% Similarity=-0.025 Sum_probs=23.3
Q ss_pred ceeCCCCceEEEEEEEeCCCCCEEEeCCCeEEEE
Q psy9404 124 TPFEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQV 157 (188)
Q Consensus 124 t~iDpGy~G~i~l~i~N~~~~~i~i~~G~riaQl 157 (188)
+.+++|.+|... .|.|++ |+.+..|+.+|-+
T Consensus 86 ~~L~~g~~~~~y-~IkNTg--PF~w~nGD~Lcll 116 (316)
T PHA03257 86 VALGVGPLPPGL-FLQNTG--PFDLCNGDAVCLL 116 (316)
T ss_pred EeccCCCCCCce-EEEecC--CeeecCCCEEEEe
Confidence 346777777743 389988 7999999988865
No 50
>PF00314 Thaumatin: Thaumatin family; InterPro: IPR001938 Thaumatin [] is an intensely sweet-tasting protein, 100 000 times sweeter than sucrose on a molar basis [] found in berries from Thaumatococcus daniellii, a tropical flowering plant known as Katemfe, it is induced by attack by viroids, which are single-stranded unencapsulated RNA molecules that do not code for protein. Thaumatin consists of about 200 residues and contains 8 disulphide bonds. Like other PR proteins, thaumatin is predicted to have a mainly beta structure, with a high content of beta-turns and little helix []. Several stress-induced proteins of plants have been found to be related to thaumatins: A maize alpha-amylase/trypsin inhibitor Two tobacco pathogenesis-related proteins: PR-R major and minor forms,which are induced after infection with viruses Salt-induced protein NP24 from tomato Osmotin, a salt-induced protein from tobacco[] Osmotin-like proteins OSML13, OSML15 and OSML81 from potato [] P21, a leaf protein from soybean PWIR2, a leaf protein from wheat [] Zeamatin, a maize antifunal protein [] This protein is also referred to as pathogenesis-related group 5 (PR5), as many thaumatin-like proteins accumulate in plants in response to infection by a pathogen and possess antifungal activity []. The proteins are involved in systematically acquired resistance and stress response in plants, although their precise role is unknown [].; PDB: 3G7M_A 2I0W_A 1AUN_A 1Z3Q_A 1KWN_A 2OQN_A 1THW_A 1LY0_A 2D8O_A 1LR3_A ....
Probab=23.75 E-value=76 Score=26.14 Aligned_cols=29 Identities=7% Similarity=0.006 Sum_probs=20.1
Q ss_pred CceEEECCCCEEEEEeeeEEEcCCCeEEEEEcccc
Q psy9404 79 GDVCIIPPNSFVLARTIEYFRIPRKILTMCIGKST 113 (188)
Q Consensus 79 ~~~~~l~Pg~~~lv~T~E~i~lP~~~~~~i~~RSs 113 (188)
..++.|.||+.. .+.+|.++.|.|++|..
T Consensus 22 ~~g~~l~~g~s~------~~~~p~~WsGriW~RTg 50 (213)
T PF00314_consen 22 TGGFRLDPGQSW------SLTVPAGWSGRIWARTG 50 (213)
T ss_dssp EEEEEE-TTEEE------EEE--TTESEEEEEEEE
T ss_pred CCCEEcCCCCeE------EEecCccccceeeecCC
Confidence 357999999873 34589999999998843
No 51
>PF07070 Spo0M: SpoOM protein; InterPro: IPR009776 This family consists of several bacterial SpoOM proteins which are thought to control sporulation in Bacillus subtilis.Spo0M exerts certain negative effects on sporulation and its gene expression is controlled by sigmaH [].
Probab=23.63 E-value=2.9e+02 Score=22.97 Aligned_cols=53 Identities=15% Similarity=0.120 Sum_probs=29.4
Q ss_pred CceEEECCCCEEEEEeeeEEEcCCCeEEEEEccccc-cccCeEeecceeCCCCceEEE
Q psy9404 79 GDVCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTY-ARCGIIVNVTPFEPEWEGYVT 135 (188)
Q Consensus 79 ~~~~~l~Pg~~~lv~T~E~i~lP~~~~~~i~~RSsl-~R~Gl~v~~t~iDpGy~G~i~ 135 (188)
.+.++|+||+..-++. .+.||.+.=... ++..+ -|-+|.+. .++||+=.-.|.
T Consensus 77 ~~~f~I~~ge~~~iPF--~~~lP~etPiT~-~~~~v~l~T~LdI~-~avD~~D~D~i~ 130 (218)
T PF07070_consen 77 SGPFTIEPGEEKEIPF--SFPLPWETPITE-GGMRVWLRTGLDIA-GAVDPGDLDPIE 130 (218)
T ss_pred CCCEEECCCCEEEEeE--EEECCCCCCccC-CCcEEEEEEEEEeC-CCCCCCCceeEE
Confidence 5679999999876655 345554433332 22222 34455444 457776654444
No 52
>COG3895 Predicted periplasmic protein [General function prediction only]
Probab=23.30 E-value=1.8e+02 Score=21.79 Aligned_cols=41 Identities=12% Similarity=0.305 Sum_probs=28.6
Q ss_pred EEEEEEEeCCCCCEEEeCCCeEEEEEEeeccccccccccCCCccc
Q psy9404 133 YVTLEFSNTTPLPAKIYSEEGCAQVLFFESDETCKTSYKDRNGKY 177 (188)
Q Consensus 133 ~i~l~i~N~~~~~i~i~~G~riaQlvF~~~~~~~~~~Y~~~~GkY 177 (188)
.|++...|.++.++++-...+ +|||-++.......|. +|.|
T Consensus 43 ~ltvky~n~gd~sv~~v~Dg~--tlv~~nviSaSGAkYa--~G~Y 83 (112)
T COG3895 43 TLTVKYNNAGDISVSFVLDGK--TLVLSNVISASGAKYA--DGIY 83 (112)
T ss_pred eEEEEEecCCCceEEEEecCC--EEEEeeeeeccCcccc--CcEE
Confidence 588899999887666655554 5788887776655664 4555
No 53
>cd08961 GH64-TLP-SF glycoside hydrolase family 64 (beta-1,3-glucanases which produce specific pentasaccharide oligomers) and thaumatin-like proteins. This superfamily includes glycoside hydrolases of family 64 (GH64), these are mostly bacterial beta-1,3-glucanases which cleave long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers and are implicated in fungal cell wall degradation. Also included in this superfamily are thaumatin, the sweet-tasting protein from the African berry Thaumatococcus daniellii, and thaumatin-like proteins (TLPs) which are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Like GH64s, some TLPs also hydrolyze the beta-1,3-glucans of the type commonly found in fungal walls. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. Several members of the plant TLP
Probab=22.88 E-value=83 Score=24.68 Aligned_cols=28 Identities=11% Similarity=0.033 Sum_probs=22.6
Q ss_pred ceEEECCCCEEEEEeeeEEEcCCCeEEEEEcccc
Q psy9404 80 DVCIIPPNSFVLARTIEYFRIPRKILTMCIGKST 113 (188)
Q Consensus 80 ~~~~l~Pg~~~lv~T~E~i~lP~~~~~~i~~RSs 113 (188)
..+.|.||+.. .|.+|..+.|.|+.|..
T Consensus 27 gg~~L~pG~s~------si~vP~~wsGRIW~Rtg 54 (153)
T cd08961 27 SGPGLAPGRST------TIQIPKGFSGRIWFRTG 54 (153)
T ss_pred cccccCCCCcE------EEEecCCceEEEEEecC
Confidence 57889999854 45689999999999854
No 54
>TIGR00187 ribE riboflavin synthase, alpha subunit. The name ribE was selected, from among alternatives including ribB and ribC, to match the usage in EcoCyc.
Probab=22.72 E-value=34 Score=28.00 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=36.3
Q ss_pred EEEc-CCCeEEEEEccccccccCeEeecceeCCCCceEE----EEEEEeCCCCCEEEeCCCeE
Q psy9404 97 YFRI-PRKILTMCIGKSTYARCGIIVNVTPFEPEWEGYV----TLEFSNTTPLPAKIYSEEGC 154 (188)
Q Consensus 97 ~i~l-P~~~~~~i~~RSsl~R~Gl~v~~t~iDpGy~G~i----~l~i~N~~~~~i~i~~G~ri 154 (188)
++.+ |+.++.++.+|-|.+=.|+++...-++..+---. |++.+|.+. +++|+++
T Consensus 122 ~~~~~p~~~~~yiv~KGsIaidGvSLTV~~v~~~~f~v~lIP~T~~~T~l~~----~~~Gd~V 180 (200)
T TIGR00187 122 WFKLQDSELMKYIVEKGSIAVDGISLTIGKVTETRFCVSLIPHTLENTILGL----KKLGDRV 180 (200)
T ss_pred EEEECCHHHHhccccCCEEEEeeeEEEEEeEcCCEEEEEEehHhHhhCcccc----CCCCCEE
Confidence 5778 8999999999999999999876555665432111 344455442 4566654
No 55
>PRK13202 ureB urease subunit beta; Reviewed
Probab=22.00 E-value=1.4e+02 Score=21.97 Aligned_cols=24 Identities=8% Similarity=0.112 Sum_probs=18.3
Q ss_pred eCCCCceEEEEEEEeCCCCCEEEe
Q psy9404 126 FEPEWEGYVTLEFSNTTPLPAKIY 149 (188)
Q Consensus 126 iDpGy~G~i~l~i~N~~~~~i~i~ 149 (188)
+.+|-+-.++|++.|.++.||.+-
T Consensus 15 ln~grr~~~~l~V~NtGDRPIQVG 38 (104)
T PRK13202 15 MNAAALSRLQMRIINAGDRPVQVG 38 (104)
T ss_pred eCCCCCceEEEEEEeCCCCceEEc
Confidence 556654578999999998887664
No 56
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=20.69 E-value=1.9e+02 Score=19.41 Aligned_cols=29 Identities=28% Similarity=0.233 Sum_probs=21.4
Q ss_pred eEEEEEEEeCCCCCEEEeCCCeEEEEEEee
Q psy9404 132 GYVTLEFSNTTPLPAKIYSEEGCAQVLFFE 161 (188)
Q Consensus 132 G~i~l~i~N~~~~~i~i~~G~riaQlvF~~ 161 (188)
|.-.+.+.|.++.++++. ...-.|++|-.
T Consensus 42 ~~~l~v~~Nls~~~~~~~-~~~~~~~l~~s 70 (89)
T PF11941_consen 42 GERLLVAFNLSDEPVTVP-EGPWGEVLFSS 70 (89)
T ss_dssp TEEEEEEEE-SSS-EEEE-TSCCEEEEEEC
T ss_pred CceEEEEEecCCCcEEcc-CCCCCeEEEcC
Confidence 467889999999999999 66667777744
No 57
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=20.22 E-value=1.4e+02 Score=20.51 Aligned_cols=14 Identities=29% Similarity=0.411 Sum_probs=7.4
Q ss_pred eEEEEEEEeCCCCC
Q psy9404 132 GYVTLEFSNTTPLP 145 (188)
Q Consensus 132 G~i~l~i~N~~~~~ 145 (188)
|.|.|.|.|.+..+
T Consensus 20 g~l~l~l~N~g~~~ 33 (89)
T PF05506_consen 20 GNLRLTLSNPGSAA 33 (89)
T ss_pred CEEEEEEEeCCCCc
Confidence 45555555555443
No 58
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=20.03 E-value=1.4e+02 Score=20.70 Aligned_cols=32 Identities=13% Similarity=0.161 Sum_probs=17.8
Q ss_pred EEEEEEEeCCCCCEEEe-CCCeEEEEEEeeccc
Q psy9404 133 YVTLEFSNTTPLPAKIY-SEEGCAQVLFFESDE 164 (188)
Q Consensus 133 ~i~l~i~N~~~~~i~i~-~G~riaQlvF~~~~~ 164 (188)
.++|.+.|.++.++.|. +.-.-+-++...-++
T Consensus 3 ~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g 35 (82)
T PF12690_consen 3 EFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEG 35 (82)
T ss_dssp EEEEEEEE-SSS-EEEEESSS--EEEEEE-TT-
T ss_pred EEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCC
Confidence 47899999999998887 333444555543333
Done!