RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9404
(188 letters)
>gnl|CDD|234753 PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed.
Length = 177
Score = 293 bits (754), Expect = e-103
Identities = 95/187 (50%), Positives = 124/187 (66%), Gaps = 12/187 (6%)
Query: 3 IKSDNWIHNMAKYHG-MIEPFVPHQVREINSRKIVSYGISSYGYDIRCANEFKIFTNINS 61
I SD I M + MIEPF P QVR ++ GYD+R NEF++FTN+NS
Sbjct: 2 ILSDRDIRKMLEEGRLMIEPFDPDQVRP-----------NATGYDLRLGNEFRVFTNVNS 50
Query: 62 TIIDPKNFDNKLFVDFVGDVCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYARCGIIV 121
T+IDPKNFD FVD G+V I+PP F LART+EYF++P ++ + G+S+ AR G+IV
Sbjct: 51 TVIDPKNFDPDSFVDIEGEVFILPPGEFALARTLEYFKLPDDVVGILEGRSSLARLGLIV 110
Query: 122 NVTPFEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVLFFESDETCKTSYKDRNGKYQGQT 181
+VT +P WEG++TLEFSN+ PLP K+Y EG Q+LFFE E + Y DR GKYQGQ
Sbjct: 111 HVTAIDPGWEGHITLEFSNSGPLPVKLYPGEGIGQLLFFELSEPAERPYNDRGGKYQGQR 170
Query: 182 GINLPKI 188
G+ L +I
Sbjct: 171 GVTLSRI 177
>gnl|CDD|223789 COG0717, Dcd, Deoxycytidine deaminase [Nucleotide transport and
metabolism].
Length = 183
Score = 225 bits (576), Expect = 4e-76
Identities = 72/192 (37%), Positives = 99/192 (51%), Gaps = 16/192 (8%)
Query: 2 TIKSDNWIHNMA-KYHGMIEPFVPHQVREINSRKIVSYGISSYGYDIRCANEFKIFTNIN 60
I SD I M + +IEPF Y I GYD+R NEF++F N
Sbjct: 1 MILSDRDIRKMVEEGRLLIEPFED-----------KEYQIQPAGYDLRLGNEFRVFRNEG 49
Query: 61 STIIDPKNFDNKL----FVDFVGDVCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYAR 116
+ +IDP N D + + I+PP F LA T+EY IP + C G+S+ AR
Sbjct: 50 AGVIDPDNPDEEDPLVEEEELEDGEFILPPGEFYLAVTLEYVEIPEDVAAFCTGRSSLAR 109
Query: 117 CGIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVLFFESDETCKTSYKDRNGK 176
G+IV+V +P +EG +TLE N+ PLP ++Y E AQ++F E D + Y R GK
Sbjct: 110 LGLIVHVGVIDPGFEGRITLELVNSGPLPIRLYPGERIAQLVFLELDSPAERPYSGRGGK 169
Query: 177 YQGQTGINLPKI 188
YQGQ G+ +I
Sbjct: 170 YQGQRGVTPSRI 181
>gnl|CDD|233806 TIGR02274, dCTP_deam, deoxycytidine triphosphate deaminase.
Members of this family include the Escherichia coli
monofunctional deoxycytidine triphosphate deaminase
(dCTP deaminase) and a Methanocaldococcus jannaschii
bifunctional dCTP deaminase (3.5.4.13)/dUTP
diphosphatase (EC 3.6.1.23), which has the EC number
3.5.4.30 for the overall operation [Purines,
pyrimidines, nucleosides, and nucleotides,
2'-Deoxyribonucleotide metabolism].
Length = 179
Score = 180 bits (458), Expect = 3e-58
Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 18/188 (9%)
Query: 6 DNWIHNMAKYHGMIEPFVPHQVREINSRKIVSYGISSYGYDIRCANEFKIFTNINSTIID 65
+ + + IEP + G D+R NEF++F N +ID
Sbjct: 5 RDIKRWLEEGLLKIEPLDE-------------EQLQPAGVDLRLGNEFRVFRNHTGAVID 51
Query: 66 PKNFDNKLFVDFV---GDVCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYARCGIIVN 122
P+N + F G+ +IPP F LA T+EY ++P ++ G+S+ AR G+ ++
Sbjct: 52 PENPKEAVSYLFEVEEGEEFVIPPGEFALATTLEYVKLPDDVVGFLEGRSSLARLGLFIH 111
Query: 123 VT--PFEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVLFFESDETCKTSYKDRNGKYQGQ 180
VT +P +EG +TLE N LP K+ AQ++F + Y R+GKYQGQ
Sbjct: 112 VTAGRIDPGFEGNITLELFNAGKLPVKLRPGMRIAQLVFERLSSPAERPYNGRSGKYQGQ 171
Query: 181 TGINLPKI 188
G+ +I
Sbjct: 172 RGVTPSRI 179
>gnl|CDD|143638 cd07557, trimeric_dUTPase, Trimeric dUTP diphosphatases. Trimeric
dUTP diphosphatases, or dUTPases, are the most common
family of dUTPase, found in bacteria, eukaryotes, and
archaea. They catalyze the hydrolysis of the dUTP-Mg
complex (dUTP-Mg) into dUMP and pyrophosphate. This
reaction is crucial for the preservation of chromosomal
integrity as it removes dUTP and therefore reduces the
cellular dUTP/dTTP ratio, and prevents dUTP from being
incorporated into DNA. It also provides dUMP as the
precursor for dTTP synthesis via the thymidylate
synthase pathway. dUTPases are homotrimeric, except some
monomeric viral dUTPases, which have been shown to mimic
a trimer. Active sites are located at the subunit
interface.
Length = 92
Score = 84.5 bits (210), Expect = 8e-22
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 73 LFVDFVGDVCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYARCGIIV-NVTPFEPEWE 131
L + + ++PP VL T E +P + + +S+ AR GI V N +P +
Sbjct: 5 LRLGEDFEGIVLPPGETVLVPTGEAIELPEGYVGLVFPRSSLARKGITVHNAGVIDPGYR 64
Query: 132 GYVTLEFSNTTPLPAKIYSEEGCAQVLF 159
G +TLE N P P I + AQ++F
Sbjct: 65 GEITLELYNLGPEPVVIKKGDRIAQLVF 92
>gnl|CDD|107053 PHA01707, dut, 2'-deoxyuridine 5'-triphosphatase.
Length = 158
Score = 61.5 bits (149), Expect = 2e-12
Identities = 39/110 (35%), Positives = 61/110 (55%), Gaps = 4/110 (3%)
Query: 78 VGDVCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYARCGIIVNVTPFEPEWEGYVTLE 137
VGD II P+ VL T EY ++P I+ C +ST+AR G+++ T + +EG +T+E
Sbjct: 51 VGDEFIIYPHEHVLLTTKEYIKLPNDIIAFCNLRSTFARKGLLIPPTIVDAGFEGQLTIE 110
Query: 138 FSNTTPLPAKIYSEEGCAQVLFFESDETCKTSYKDRNGKYQGQTGINLPK 187
++ +P K+ S E ++F + + Y NGKYQ Q G+ L K
Sbjct: 111 LVGSS-IPVKLKSGERFLHLIFARTLTPVEKPY---NGKYQKQKGVTLAK 156
>gnl|CDD|201398 pfam00692, dUTPase, dUTPase. dUTPase hydrolyses dUTP to dUMP and
pyrophosphate.
Length = 129
Score = 32.6 bits (75), Expect = 0.037
Identities = 19/102 (18%), Positives = 39/102 (38%)
Query: 82 CIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNT 141
+PP VL T +P + +G+S+ A G+IV + ++ G + + N+
Sbjct: 24 FTLPPGGTVLVPTDIRIPLPPGTFGLILGRSSLAAKGLIVLPGIIDSDYRGEIKVVLFNS 83
Query: 142 TPLPAKIYSEEGCAQVLFFESDETCKTSYKDRNGKYQGQTGI 183
I + AQ++ ++ +G +G
Sbjct: 84 GKKDFTIKKGDRIAQLILLPCVHPELEPVENLERTERGDSGF 125
>gnl|CDD|227885 COG5598, COG5598, Trimethylamine:corrinoid methyltransferase
[Coenzyme metabolism].
Length = 526
Score = 29.3 bits (66), Expect = 1.3
Identities = 13/21 (61%), Positives = 13/21 (61%)
Query: 106 TMCIGKSTYARCGIIVNVTPF 126
TMC G YAR G V VTPF
Sbjct: 256 TMCQGLIAYARHGQPVVVTPF 276
>gnl|CDD|204979 pfam12611, DUF3766, Protein of unknown function (DUF3766). This
domain family is found in bacteria, and is
approximately 20 amino acids in length. There is a
conserved FTNID sequence motif. There is a single
completely conserved residue T that may be functionally
important.
Length = 24
Score = 24.7 bits (55), Expect = 4.6
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 55 IFTNINSTII 64
+FTNI+S +I
Sbjct: 15 VFTNIDSAVI 24
>gnl|CDD|234959 PRK01550, truB, tRNA pseudouridine synthase B; Provisional.
Length = 304
Score = 27.3 bits (61), Expect = 5.0
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
Query: 104 ILTMCIGKSTYARCGIIVN-VTPFEPEWEGYVTLEFSNTT 142
+L +C+G++T I +T +EG VTL FS TT
Sbjct: 44 VLPICVGRATK-----IAEYLTDEGKTYEGEVTLGFSTTT 78
>gnl|CDD|177443 PHA02653, PHA02653, RNA helicase NPH-II; Provisional.
Length = 675
Score = 27.2 bits (61), Expect = 5.8
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 15/74 (20%)
Query: 36 VSYGISSYGYDIRCANEFKIFTNINST-----IIDPKNFDNKLFVDFVGDVCIIPPNSFV 90
VS G Y YD+ K I+S I+ K F+ + D+ +IP N
Sbjct: 502 VSPGTYVYFYDLDLLKPIK---RIDSEFLHNYILYAKYFN----LTLPEDLFVIPSNLDR 554
Query: 91 LARTIEY---FRIP 101
L +T EY F I
Sbjct: 555 LRKTEEYIDSFNIS 568
>gnl|CDD|132845 cd07206, Pat_TGL3-4-5_SDP1, Triacylglycerol lipase 3, 4, and 5 and
Sugar-Dependent 1 lipase. Triacylglycerol lipases are
involved in triacylglycerol mobilization and
degradation; they are found in lipid particles. TGL4 is
30% homologus to TGL3, whereas TGL5 is 26% homologus to
TGL3. Sugar-Dependent 1 (SDP1) lipase has a patatin-like
acyl-hydrolase domain that initiates the breakdown of
storage oil in germinating Arabidopsis seeds. This
family includes subfamilies of proteins: TGL3, TGL4,
TGL5, and SDP1.
Length = 298
Score = 26.8 bits (60), Expect = 6.9
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 28/100 (28%)
Query: 12 MAK-YHGMIEPFVPHQVREINSRKIVSYGISSYGYDI---RCANEFKIFTNINSTIIDPK 67
MAK G I P++P RK V +S D+ R A + N+N I+
Sbjct: 185 MAKNRDGEIVPYLP-------GRKWVDGSVSD---DLPAKRLARLY----NVNHFIVSQT 230
Query: 68 N-FDNKLFVDFVGDVCIIPPNSFVLARTIEYFRIPRKILT 106
N ++ GD+ IIPP S F P K+L+
Sbjct: 231 NPHVVPFLQEYSGDITIIPPFS---------FSNPLKLLS 261
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.139 0.434
Gapped
Lambda K H
0.267 0.0656 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,655,222
Number of extensions: 883462
Number of successful extensions: 681
Number of sequences better than 10.0: 1
Number of HSP's gapped: 671
Number of HSP's successfully gapped: 22
Length of query: 188
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 97
Effective length of database: 6,901,388
Effective search space: 669434636
Effective search space used: 669434636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.5 bits)