RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9404
(188 letters)
>3km3_A DCTP deaminase, deoxycytidine triphosphate deaminase; ssgcid, NIH,
niaid, SBRI, UW, decode, deoxycytidine triphosp
deaminase; 2.10A {Anaplasma phagocytophilum}
Length = 206
Score = 208 bits (529), Expect = 5e-69
Identities = 108/188 (57%), Positives = 133/188 (70%), Gaps = 4/188 (2%)
Query: 1 MTIKSDNWIHNMAKYHGMIEPFVPHQVREINSRKIVSYGISSYGYDIRCANEFKIFTNIN 60
M++ D+WI A GMI PFV H+ ++SYG+SSYGYD R N+FKIF N +
Sbjct: 22 MSVMPDHWIKERALKDGMISPFVDHKEGT----GVLSYGLSSYGYDARLDNKFKIFANTH 77
Query: 61 STIIDPKNFDNKLFVDFVGDVCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYARCGII 120
S ++DPKNF FVD GD CIIPPNSF+LA+T+EYF IPR ++ +C+GKSTYARCGI+
Sbjct: 78 SVVVDPKNFSQDSFVDREGDFCIIPPNSFMLAKTVEYFNIPRDVMVVCVGKSTYARCGIV 137
Query: 121 VNVTPFEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVLFFESDETCKTSYKDRNGKYQGQ 180
VNVTP EP W GYVTLEFSNT+PLP K+Y+ EG Q LFF E C SY + GKY GQ
Sbjct: 138 VNVTPLEPGWSGYVTLEFSNTSPLPVKVYAFEGACQFLFFSGKERCSKSYDEAGGKYMGQ 197
Query: 181 TGINLPKI 188
+ + LP I
Sbjct: 198 SDVTLPII 205
>4dhk_A DCTP deaminase, deoxycytidine triphosphate deaminase; hydrolase;
2.05A {Burkholderia thailandensis}
Length = 191
Score = 205 bits (522), Expect = 3e-68
Identities = 150/188 (79%), Positives = 162/188 (86%), Gaps = 1/188 (0%)
Query: 1 MTIKSDNWIHNMAKYHGMIEPFVPHQVREI-NSRKIVSYGISSYGYDIRCANEFKIFTNI 59
M+IKSD WI MA+ H MIEPFVP QVR + R+IVSYG SSYGYDIRCA+EFKIFTNI
Sbjct: 3 MSIKSDKWIRRMAEEHKMIEPFVPDQVRAAEDGRRIVSYGTSSYGYDIRCADEFKIFTNI 62
Query: 60 NSTIIDPKNFDNKLFVDFVGDVCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYARCGI 119
NSTI+DPKNFD FVDF GDVCIIPPNSF LART+EYFRIPR +LT+C+GKSTYARCGI
Sbjct: 63 NSTIVDPKNFDEGSFVDFKGDVCIIPPNSFALARTVEYFRIPRTVLTVCLGKSTYARCGI 122
Query: 120 IVNVTPFEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVLFFESDETCKTSYKDRNGKYQG 179
IVNVTPFEPEWEGYVTLEFSNTTPLPAKIY+ EG AQVLFFESDE C SY DR GKYQG
Sbjct: 123 IVNVTPFEPEWEGYVTLEFSNTTPLPAKIYANEGVAQVLFFESDEVCDVSYADRGGKYQG 182
Query: 180 QTGINLPK 187
Q G+ LPK
Sbjct: 183 QRGVTLPK 190
>2yzj_A 167AA long hypothetical dutpase; all beta proteins, hypothetical
protein, NPPSFA; HET: DUD; 1.66A {Sulfolobus tokodaii}
PDB: 2zdc_A
Length = 169
Score = 199 bits (509), Expect = 2e-66
Identities = 38/183 (20%), Positives = 66/183 (36%), Gaps = 23/183 (12%)
Query: 1 MTIKSDNWIHNMAKYHGMIEPFVPHQVREINSRKIVSYGISSYGYDIRCANEFKIFTNIN 60
+ I S I N+ +I + VR GYD+R + K + +
Sbjct: 10 LMILSHQSIKNLLG--KVILNYSEENVR-------------ENGYDLRICGD-KYYELVQ 53
Query: 61 STIIDPKNFDNKLFVDFVGDVCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYARCGII 120
+ K + + I+ N L + E F +P + + KST AR G +
Sbjct: 54 GAELPEKKATLREIEF--KERAILSANHTYLFESCEEFNMPADLAVLITLKSTLARNGFL 111
Query: 121 VNVTPFEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVLFFESDETCKTSYKDRNGKYQGQ 180
T + ++G V + + + ++F + D+ + Y NGKYQG
Sbjct: 112 APPTVIDAGYKGKVNVAITAVYNS--SLKKGMATHHLIFLKLDKPTERLY---NGKYQGG 166
Query: 181 TGI 183
I
Sbjct: 167 ILI 169
>2qxx_A DCTP deaminase, deoxycytidine triphosphate deaminase; distorted
beta barrel, hydrolase, nucleotide metabolism; HET: TTP
1PE; 2.00A {Mycobacterium tuberculosis} PDB: 2qlp_A*
Length = 190
Score = 200 bits (509), Expect = 4e-66
Identities = 48/194 (24%), Positives = 75/194 (38%), Gaps = 21/194 (10%)
Query: 3 IKSDNWIHNMA-KYHGMIEPFVPHQVREINSRKIVSYGISSYGYDIRCANEFKIFTNINS 61
+ SD + I+PF V+ D+R F++F N
Sbjct: 2 LLSDRDLRAEISSGRLGIDPFDDTLVQP-------------SSIDVRLDCLFRVFNNTRY 48
Query: 62 TIIDPKNFDN---KLFVDFVGDVCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYARCG 118
T IDP + L G+ ++ P FVL T+E F +P + GKS+ R G
Sbjct: 49 THIDPAKQQDELTSLVQPVDGEPFVLHPGEFVLGSTLELFTLPDNLAGRLEGKSSLGRLG 108
Query: 119 IIVNVTP--FEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVLFFESDETCKTSYKDR--N 174
++ + T +P + G++TLE SN LP ++ Q+ + Y
Sbjct: 109 LLTHSTAGFIDPGFSGHITLELSNVANLPITLWPGMKIGQLCMLRLTSPSEHPYGSSRAG 168
Query: 175 GKYQGQTGINLPKI 188
KYQGQ G +
Sbjct: 169 SKYQGQRGPTPSRS 182
>1xs1_A DCTP deaminase, deoxycytidine triphosphate deaminase; nucleotide
metabolism, trimer, hydrolase; HET: DUT; 1.80A
{Escherichia coli} SCOP: b.85.4.1 PDB: 2v9x_A* 1xs6_A*
1xs4_A* 2j4q_A* 2j4h_A*
Length = 193
Score = 191 bits (487), Expect = 1e-62
Identities = 47/201 (23%), Positives = 75/201 (37%), Gaps = 27/201 (13%)
Query: 3 IKSDNWIHNMAKYHGM-IEPFVPHQVREINSRKIVSYGISSYGYDIRCANEFKIFTNINS 61
D I + I P P I+ D+R N+F+ F +
Sbjct: 2 RLCDRDIEAWLDEGRLSINPRPP------------VERINGATVDVRLGNKFRTFRGHTA 49
Query: 62 TIID---PKNFDNKLFVDFV--------GDVCIIPPNSFVLARTIEYFRIPRKILTMCIG 110
ID PK+ + + G+ + P LA T+E +P ++ G
Sbjct: 50 AFIDLSGPKDEVSAALDRVMSDEIVLDEGEAFYLHPGELALAVTLESVTLPADLVGWLDG 109
Query: 111 KSTYARCGIIVNVTPF--EPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVLFFESDETCKT 168
+S+ AR G++V+VT +P W G + LEF N+ LP + + F
Sbjct: 110 RSSLARLGLMVHVTAHRIDPGWSGCIVLEFYNSGKLPLALRPGMLIGALSFEPLSGPAVR 169
Query: 169 SYKDR-NGKYQGQTGINLPKI 188
Y R + KY+ Q G +I
Sbjct: 170 PYNRREDAKYRNQQGAVASRI 190
>1pkh_A Bifunctional deaminase/diphosphatase; DCTP deaminase, dutpase,
DCD-DUT, MJ0430, DCTP, DUTP, hydrolase; 1.42A
{Methanocaldococcus jannaschii} SCOP: b.85.4.1 PDB:
1ogh_A 1pkj_A* 1pkk_A* 2hxb_A 2hxe_A 3gf0_A 2hxd_A*
Length = 204
Score = 163 bits (414), Expect = 1e-51
Identities = 43/209 (20%), Positives = 71/209 (33%), Gaps = 37/209 (17%)
Query: 3 IKSDNWIHNM-AKYHGMIEPFVPHQVREINSRKIVSYGISSYGYDIRCANEFKIFTN--- 58
I SD I + +I+PF V YD+ +EF I+ +
Sbjct: 2 ILSDKDIIDYVTSKRIIIKPFNKDFVG-------------PCSYDVTLGDEFIIYDDEVY 48
Query: 59 -------------INSTIIDPKNF---DNKLFVDFVGDVCIIPPNSFVLARTIEYFRIPR 102
NS ++ P N+ + K+ VL T EY +P
Sbjct: 49 DLSKELNYKRIKIKNSILVCPLNYNLTEEKINYFKEKYNVDYVVEGGVLGTTNEYIELPN 108
Query: 103 KILTMCIGKSTYARCGIIVNVTP--FEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVLFF 160
I G+S+ R + + T + ++G +TLE P +Y + Q++F
Sbjct: 109 DISAQYQGRSSLGRVFLTSHQTAGWIDAGFKGKITLEIVAFDK-PVILYKNQRIGQLIFS 167
Query: 161 ESDETCKTSYKDR-NGKYQGQTGINLPKI 188
+ Y +R KY Q + I
Sbjct: 168 KLLSPADVGYSERKTSKYAYQKSVMPSLI 196
>2r9q_A AGR_C_764P, 2'-deoxycytidine 5'-triphosphate deaminase; structural
genom MCSG, PSI-2, protein structure initiative; 2.20A
{Agrobacterium tumefaciens str}
Length = 370
Score = 84.2 bits (207), Expect = 1e-19
Identities = 26/200 (13%), Positives = 50/200 (25%), Gaps = 28/200 (14%)
Query: 3 IKSDNWIHNMAKYHGMI--EPFVPHQVREINSRKIVSYGISSYGYDIRCANEFKIFTNIN 60
I +D I + + QV+ S D+R ++
Sbjct: 12 ILADGAIRALFAGDKLKSEADLDVDQVQP-AS------------LDLRLGSKAYRVRASF 58
Query: 61 STIIDPKNFDNKLFVDFV----GDVCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYAR 116
+ D ++ + +E +P + KS+ R
Sbjct: 59 MPGPGTRVIDKLNRFSLHEVDLSQGAVLETGCVYIVPLMESLALPADMSASANPKSSTGR 118
Query: 117 CGIIVNVTP--------FEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVLFFESDETCKT 168
I V + G + LE S T P + +Q+ F
Sbjct: 119 LDIFTRVMTDNAQEFDKIPAGYTGPLYLEISPRTF-PIVVRRGSRLSQIRFRIGHALLNE 177
Query: 169 SYKDRNGKYQGQTGINLPKI 188
S + + + P +
Sbjct: 178 SEVLKLHETETLVASENPNV 197
Score = 51.8 bits (123), Expect = 2e-08
Identities = 19/189 (10%), Positives = 51/189 (26%), Gaps = 10/189 (5%)
Query: 1 MTIKSDNWIHNMAKYHGMIEPFVPHQVREINSRKIVSYGISSYGYDIRCANEFKIFTNIN 60
+ +++ + + + ++ P+ + I G G +++
Sbjct: 172 HALLNESEVLKLHETETLVASENPNVTGGGIALSIDLKGFGENGLIGYRGKHHTAVVDVD 231
Query: 61 STIIDPKNFDNKLFVDFVGDVCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYARCGII 120
+ I+ P+ F + + E +P +
Sbjct: 232 KKAQHDVLDFWEPLFARGRAELILDPDEFYILVSREAVHVPPLYAAEMTPFDPLVGEFRV 291
Query: 121 VNVTPFEPEWE--------GYVTLEFSNTTPLPAKIYSEEGCAQVLFFESDETCKTSY-K 171
F+P + LE + +P + + ++++ E + Y
Sbjct: 292 HYAGFFDPGFGHAQAGGTGSRAVLEV-RSHEVPFILEHGQIVGRLVYEHMLEKPEGLYGT 350
Query: 172 DRNGKYQGQ 180
YQ Q
Sbjct: 351 GLGSNYQAQ 359
>2bsy_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; dutpase, monomer,
nucleotide metabolism, structural proteomics in europe,
spine; HET: UMP; 1.5A {Human herpesvirus 4} SCOP:
b.85.4.1 b.85.4.1 PDB: 2bt1_A* 2we1_A* 2we0_A* 2we2_A*
2we3_A*
Length = 278
Score = 55.5 bits (133), Expect = 1e-09
Identities = 19/136 (13%), Positives = 36/136 (26%), Gaps = 5/136 (3%)
Query: 47 IRCANEFKIFTNINSTIIDPKNF-DNKLFVDFVGDVCIIPPNSFVLARTIEYFRIPRKIL 105
I P+ D L V D+ + P + + T+
Sbjct: 107 AAFRYATPQMEEDKGPINHPQYPGDVGLDVSLPKDLALFPHQTVSVTLTVPPP-SIPHHR 165
Query: 106 TMCIGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVLFFESDET 165
G+S A GI+V + G V + +N + + Q+++
Sbjct: 166 PTIFGRSGLAMQGILVKPCRWRR---GGVDVSLTNFSDQTVFLNKYRRFCQLVYLHKHHL 222
Query: 166 CKTSYKDRNGKYQGQT 181
+ G
Sbjct: 223 TSFYSPHSDAGVLGPR 238
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 3e-05
Identities = 31/204 (15%), Positives = 60/204 (29%), Gaps = 46/204 (22%)
Query: 2 TIKSDNWIHNMAKYHGMIEPFVPHQV-RE-------------INSRKIVSYGISSYG--- 44
++ + +I + + + F + V R ++ ++ G+ G
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165
Query: 45 --------YDIRCANEFKIF----TNINSTIIDPKNFDNKLFVDFVGDVCIIPPNSFVLA 92
Y ++C +FKIF N NS + KL + +S +
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML-QKLLYQIDPNWTSRSDHSSNIK 224
Query: 93 RTIEYFRIPRKILTMCIGKSTYARCGIIV-NVTPFEPE-WEGY--------VTLEFSNTT 142
I + + L + Y C +++ NV + W + T T
Sbjct: 225 LRIHSIQAELRRL---LKSKPYENCLLVLLNV--QNAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 143 PLPAKIYSEEGCAQVLF-FESDET 165
L A + DE
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEV 303
Score = 39.1 bits (90), Expect = 5e-04
Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 24/118 (20%)
Query: 13 AKYHGMIEPFVPHQVREINSRKI------VSYGISSYGYDIRCANEFKIFTNINSTI--I 64
KY +P +V N R++ + G++++ + N K+ T I S++ +
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN-WKHVNCDKLTTIIESSLNVL 366
Query: 65 DPKNFDNKLFVDFVGDVCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYARCGIIVN 122
+P + K+F + PP++ IP +L++ + ++VN
Sbjct: 367 EPAEY-RKMFDRLS----VFPPSA----------HIPTILLSLIWFDVIKSDVMVVVN 409
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta
sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1
c.72.2.1
Length = 452
Score = 27.5 bits (62), Expect = 3.2
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 20 EPFVPHQVREINSRKIVSYGISSYGYDIRCAN 51
+ I SRK+ + ++ D N
Sbjct: 221 NNDWLNWQSVIGSRKVWRFSPNAANSDFTATN 252
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1
domain, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
d.58.7.1
Length = 112
Score = 25.4 bits (56), Expect = 6.2
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 115 ARCGIIVNVTPFEPEWEGYVTLEFSNT 141
++ G I + F+ +G ++ F +
Sbjct: 48 SKFGQIRKLLLFDRHPDGVASVSFRDP 74
>1qfx_A Protein (PH 2.5 acid phosphatase); phosphomonoesterase, hydrolase;
HET: NAG BMA MAN; 2.40A {Aspergillus niger} SCOP:
c.60.1.2
Length = 460
Score = 26.3 bits (57), Expect = 8.2
Identities = 9/51 (17%), Positives = 14/51 (27%)
Query: 35 IVSYGISSYGYDIRCANEFKIFTNINSTIIDPKNFDNKLFVDFVGDVCIIP 85
+ Y + G A + + LF +F D I P
Sbjct: 274 LNYYYCAGPGDKNMAAVGAVYANASLTLLNQGPKEAGSLFFNFAHDTNITP 324
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.434
Gapped
Lambda K H
0.267 0.0491 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,993,112
Number of extensions: 172343
Number of successful extensions: 427
Number of sequences better than 10.0: 1
Number of HSP's gapped: 400
Number of HSP's successfully gapped: 17
Length of query: 188
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 100
Effective length of database: 4,244,745
Effective search space: 424474500
Effective search space used: 424474500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.1 bits)