RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9404
(188 letters)
>d1xs1a_ b.85.4.1 (A:) Deoxycytidine triphosphate deaminase (dCTP
deaminase) {Escherichia coli [TaxId: 562]}
Length = 193
Score = 133 bits (336), Expect = 2e-40
Identities = 47/201 (23%), Positives = 76/201 (37%), Gaps = 27/201 (13%)
Query: 3 IKSDNWIHNMAKYHGM-IEPFVPHQVREINSRKIVSYGISSYGYDIRCANEFKIFTNINS 61
D I + I P P + I+ D+R N+F+ F +
Sbjct: 2 RLCDRDIEAWLDEGRLSINPRPPVER------------INGATVDVRLGNKFRTFRGHTA 49
Query: 62 TIID---PKNFDNKLFVDFV--------GDVCIIPPNSFVLARTIEYFRIPRKILTMCIG 110
ID PK+ + + G+ + P LA T+E +P ++ G
Sbjct: 50 AFIDLSGPKDEVSAALDRVMSDEIVLDEGEAFYLHPGELALAVTLESVTLPADLVGWLDG 109
Query: 111 KSTYARCGIIVNVTP--FEPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVLFFESDETCKT 168
+S+ AR G++V+VT +P W G + LEF N+ LP + + F
Sbjct: 110 RSSLARLGLMVHVTAHRIDPGWSGCIVLEFYNSGKLPLALRPGMLIGALSFEPLSGPAVR 169
Query: 169 SYKDR-NGKYQGQTGINLPKI 188
Y R + KY+ Q G +I
Sbjct: 170 PYNRREDAKYRNQQGAVASRI 190
>d1pkha_ b.85.4.1 (A:) Bifunctional dCTP deaminase/dUTPase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 182
Score = 92.2 bits (228), Expect = 2e-24
Identities = 36/180 (20%), Positives = 66/180 (36%), Gaps = 10/180 (5%)
Query: 3 IKSDNWIHNM-AKYHGMIEPFVPHQVREINSRKIVSYGISSYGYDIRCANEFKIFTNI-- 59
I SD I + +I+PF V + + Y ++ ++ + I
Sbjct: 2 ILSDKDIIDYVTSKRIIIKPFNKDFVGPCSYDVTLGDEFIIYDDEVYDLSKELNYKRIKI 61
Query: 60 -NSTIIDPKNF---DNKLFVDFVGDVCIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYA 115
NS ++ P N+ + K+ VL T EY +P I G+S+
Sbjct: 62 KNSILVCPLNYNLTEEKINYFKEKYNVDYVVEGGVLGTTNEYIELPNDISAQYQGRSSLG 121
Query: 116 RCGIIVNVTPF--EPEWEGYVTLEFSNTTPLPAKIYSEEGCAQVLFFESDETCKTSYKDR 173
R + + T + ++G +TLE P +Y + Q++F + Y +R
Sbjct: 122 RVFLTSHQTAGWIDAGFKGKITLEIVAFDK-PVILYKNQRIGQLIFSKLLSPADVGYSER 180
>d2bsya2 b.85.4.1 (A:121-256) Monomeric viral dUTPase {Epstein-barr
virus [TaxId: 10376]}
Length = 136
Score = 62.2 bits (151), Expect = 2e-13
Identities = 13/101 (12%), Positives = 26/101 (25%), Gaps = 3/101 (2%)
Query: 82 CIIPPNSFVLARTIEYFRIPRKILTMCIGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNT 141
+ P+ V G+S A GI+V + G V + +N
Sbjct: 22 LALFPHQTVSVTLTVPPPSIPHHRPTIFGRSGLAMQGILVKPCRW---RRGGVDVSLTNF 78
Query: 142 TPLPAKIYSEEGCAQVLFFESDETCKTSYKDRNGKYQGQTG 182
+ + Q+++ + G
Sbjct: 79 SDQTVFLNKYRRFCQLVYLHKHHLTSFYSPHSDAGVLGPRS 119
>d2qy0b1 b.47.1.2 (B:447-686) Complement C1R protease, catalytic
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 240
Score = 29.0 bits (63), Expect = 0.31
Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 8 WIHNMAKYHGMIEPFVPHQVREINSRKIVSYGISSYGYDIRCANEFKIFTNINS 61
++ + + VR+ N+ + V+ GI S+G C+ + +T + +
Sbjct: 178 GHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIG--CSRGYGFYTKVLN 229
>d1q42a_ d.17.4.2 (A:) mRNA transport regulator MTR2 {Yeast (Candida
albicans) [TaxId: 5476]}
Length = 174
Score = 26.5 bits (58), Expect = 1.7
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 109 IGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNT 141
+G + IIVN P P + L+F
Sbjct: 40 LGSNLKRSSAIIVNGQPIIPSPQEDCKLQFQKK 72
>d3duea1 d.98.2.1 (A:20-145) Putative periplasmic protein BVU2987
{Bacteroides vulgatus [TaxId: 821]}
Length = 126
Score = 24.8 bits (54), Expect = 4.6
Identities = 11/67 (16%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 4 KSDNWIHNMAKYHGMIEPFVPHQVREINSRKIVSYGI-----SSYGYDIRCANEFKIFTN 58
K W KY + VP +++ + + + Y+++ +N ++I +
Sbjct: 57 KKGIWTEVNCKYSAVPVAVVPDAIKKYVATNYPDAKMLKIERDKHDYEVKLSNGWEIKFD 116
Query: 59 INSTIID 65
+ +ID
Sbjct: 117 MQFNVID 123
>d2o8sa1 a.295.1.1 (A:54-278) Uncharacterized protein AGR_C_984p
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 225
Score = 24.8 bits (54), Expect = 6.0
Identities = 8/44 (18%), Positives = 18/44 (40%)
Query: 30 INSRKIVSYGISSYGYDIRCANEFKIFTNINSTIIDPKNFDNKL 73
+ ++ +Y + ++G + + I + D F NKL
Sbjct: 49 MADTRLYNYALKAHGLEDMAYAKAFIRKVLTEGASDKNAFANKL 92
>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen
E) {Cow (Bos taurus) [TaxId: 9913]}
Length = 232
Score = 24.7 bits (52), Expect = 7.2
Identities = 9/63 (14%), Positives = 19/63 (30%), Gaps = 2/63 (3%)
Query: 1 MTIKSDNWIHNMAKYHGMIEPFVPHQVREINSRKIVSYGISSYGYDIRCANEFK--IFTN 58
+T+K G +G++S+ C K +FT
Sbjct: 158 ITVKKTMVCAGGDTRSGCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTR 217
Query: 59 INS 61
+++
Sbjct: 218 VSA 220
>d1dl2a_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 511
Score = 25.0 bits (54), Expect = 7.7
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 6/51 (11%)
Query: 54 KIFTNINSTIIDPKNFDNKLFVDFVGDVCIIPPN------SFVLARTIEYF 98
+I T+ N + D +P SF LA T++Y
Sbjct: 420 EIATSFFENTCVDCNDPKLRRFTSLSDCITLPTKKSNNMESFWLAETLKYL 470
>d3elga1 d.98.2.1 (A:20-146) Putative periplasmic protein BVU2443
{Bacteroides vulgatus [TaxId: 821]}
Length = 127
Score = 24.0 bits (52), Expect = 8.8
Identities = 7/67 (10%), Positives = 20/67 (29%), Gaps = 5/67 (7%)
Query: 4 KSDNWIHNMAKYHGMIEPFVPHQVREINSRKIVSYGI-----SSYGYDIRCANEFKIFTN 58
W+ K + F+P + + + + GY++ N ++ +
Sbjct: 58 SKGEWLEIDCKNKSVPSTFIPQAISKYMKANYNGHKTVKIERNRKGYELTLENGLEVDFD 117
Query: 59 INSTIID 65
+
Sbjct: 118 QFGGFLK 124
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.434
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 767,075
Number of extensions: 36483
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 18
Length of query: 188
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 108
Effective length of database: 1,309,196
Effective search space: 141393168
Effective search space used: 141393168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.2 bits)