Query psy9406
Match_columns 312
No_of_seqs 178 out of 1193
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 18:22:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9406.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9406hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2025 FixB Electron transfer 100.0 6E-100 1E-104 704.8 34.1 306 1-312 1-311 (313)
2 PLN00022 electron transfer fla 100.0 3E-99 6E-104 715.3 35.4 312 1-312 27-353 (356)
3 PRK03363 fixB putative electro 100.0 7.5E-96 2E-100 682.8 33.9 298 3-312 7-312 (313)
4 PRK11916 electron transfer fla 100.0 2E-93 4.2E-98 666.3 35.6 298 3-312 7-311 (312)
5 KOG3954|consensus 100.0 2.8E-90 6.2E-95 612.4 24.6 310 2-312 22-334 (336)
6 PF00766 ETF_alpha: Electron t 100.0 4.4E-45 9.6E-50 276.9 7.6 86 190-275 1-86 (86)
7 cd01715 ETF_alpha The electron 100.0 6.9E-34 1.5E-38 245.3 20.6 159 2-161 1-161 (168)
8 cd01985 ETF The electron trans 100.0 3.4E-31 7.4E-36 230.9 20.8 156 2-158 1-169 (181)
9 PF01012 ETF: Electron transfe 100.0 5.7E-31 1.2E-35 226.0 16.3 153 2-154 1-164 (164)
10 cd01714 ETF_beta The electron 99.9 5.1E-24 1.1E-28 189.2 17.9 143 10-156 29-184 (202)
11 PRK12342 hypothetical protein; 99.5 1.2E-12 2.5E-17 119.9 20.1 140 13-156 32-185 (254)
12 PRK03359 putative electron tra 99.5 5.6E-12 1.2E-16 115.6 18.6 140 13-156 33-189 (256)
13 COG2086 FixA Electron transfer 99.4 1.1E-11 2.4E-16 113.4 17.6 141 12-156 33-188 (260)
14 KOG3180|consensus 98.5 2.5E-06 5.4E-11 74.3 13.6 131 12-146 36-181 (254)
15 PRK07979 acetolactate synthase 97.4 0.00065 1.4E-08 69.5 8.8 117 193-311 203-335 (574)
16 PF00205 TPP_enzyme_M: Thiamin 97.3 0.0015 3.2E-08 54.0 8.1 109 197-307 13-137 (137)
17 PRK08322 acetolactate synthase 97.2 0.0014 3E-08 66.6 8.6 117 193-311 193-324 (547)
18 PRK07789 acetolactate synthase 97.1 0.0014 3E-08 67.6 8.4 117 193-311 228-360 (612)
19 CHL00099 ilvB acetohydroxyacid 97.1 0.0014 3.1E-08 67.2 8.3 117 193-311 214-346 (585)
20 PRK06725 acetolactate synthase 97.1 0.0018 3.8E-08 66.3 8.6 117 193-311 211-343 (570)
21 TIGR02418 acolac_catab acetola 97.1 0.0018 3.9E-08 65.7 8.6 117 193-311 192-324 (539)
22 TIGR01504 glyox_carbo_lig glyo 97.1 0.0021 4.6E-08 66.0 9.0 117 193-311 199-332 (588)
23 PRK06048 acetolactate synthase 97.0 0.003 6.5E-08 64.4 9.5 116 194-311 205-336 (561)
24 PRK06112 acetolactate synthase 97.0 0.0027 5.8E-08 65.0 9.2 117 193-311 210-346 (578)
25 PRK08617 acetolactate synthase 97.0 0.0025 5.4E-08 64.9 8.1 117 193-311 198-330 (552)
26 PRK08527 acetolactate synthase 96.9 0.0028 6.1E-08 64.7 7.8 117 193-311 200-332 (563)
27 PRK06276 acetolactate synthase 96.8 0.0047 1E-07 63.3 9.1 117 193-311 200-332 (586)
28 PRK06882 acetolactate synthase 96.8 0.0039 8.4E-08 63.7 8.0 117 193-311 203-335 (574)
29 PRK08979 acetolactate synthase 96.8 0.004 8.6E-08 63.7 7.9 117 193-311 203-335 (572)
30 PRK11269 glyoxylate carboligas 96.7 0.0048 1E-07 63.4 8.2 117 193-311 200-333 (591)
31 PRK07710 acetolactate synthase 96.7 0.0059 1.3E-07 62.4 8.7 117 193-311 212-344 (571)
32 PRK06965 acetolactate synthase 96.7 0.0069 1.5E-07 62.2 9.0 117 193-311 218-351 (587)
33 PRK06466 acetolactate synthase 96.7 0.0062 1.3E-07 62.3 8.3 117 193-311 203-335 (574)
34 PRK06154 hypothetical protein; 96.7 0.0066 1.4E-07 62.1 8.4 117 193-312 211-342 (565)
35 PRK08155 acetolactate synthase 96.6 0.0063 1.4E-07 62.1 8.1 117 193-311 208-340 (564)
36 PRK06456 acetolactate synthase 96.6 0.0079 1.7E-07 61.5 8.7 117 193-311 204-337 (572)
37 PRK07282 acetolactate synthase 96.6 0.0067 1.5E-07 62.0 8.2 116 193-311 207-339 (566)
38 PRK08978 acetolactate synthase 96.5 0.0094 2E-07 60.6 8.4 116 193-311 193-325 (548)
39 PRK05858 hypothetical protein; 96.5 0.006 1.3E-07 62.0 6.7 117 193-311 200-323 (542)
40 PRK07092 benzoylformate decarb 96.5 0.0088 1.9E-07 60.6 7.9 117 193-312 203-336 (530)
41 PRK07525 sulfoacetaldehyde ace 96.4 0.013 2.7E-07 60.2 9.0 117 193-311 197-332 (588)
42 PRK07524 hypothetical protein; 96.4 0.0074 1.6E-07 61.1 7.1 116 193-312 198-329 (535)
43 TIGR00118 acolac_lg acetolacta 96.4 0.012 2.5E-07 60.0 8.3 117 193-311 198-330 (558)
44 PRK08327 acetolactate synthase 96.4 0.014 3E-07 59.8 8.7 118 193-312 217-344 (569)
45 PRK07418 acetolactate synthase 96.4 0.012 2.6E-07 60.8 8.3 116 194-311 222-353 (616)
46 PRK06546 pyruvate dehydrogenas 96.3 0.0099 2.1E-07 60.9 7.2 112 193-311 198-322 (578)
47 PRK08273 thiamine pyrophosphat 96.2 0.017 3.6E-07 59.5 8.3 115 193-312 205-333 (597)
48 PRK08199 thiamine pyrophosphat 96.2 0.018 4E-07 58.6 8.3 116 193-311 201-336 (557)
49 PRK09107 acetolactate synthase 96.1 0.021 4.6E-07 58.8 8.6 117 193-311 209-343 (595)
50 TIGR03254 oxalate_oxc oxalyl-C 96.1 0.013 2.9E-07 59.6 6.6 117 193-311 203-329 (554)
51 PRK07064 hypothetical protein; 96.0 0.018 4E-07 58.3 7.2 114 193-311 200-326 (544)
52 PRK08266 hypothetical protein; 95.9 0.016 3.4E-07 58.9 6.5 114 193-311 202-324 (542)
53 TIGR03457 sulphoacet_xsc sulfo 95.8 0.032 7E-07 57.1 8.4 117 193-311 193-328 (579)
54 PRK09259 putative oxalyl-CoA d 95.8 0.019 4.2E-07 58.6 6.7 117 193-311 210-336 (569)
55 PLN02470 acetolactate synthase 95.8 0.034 7.4E-07 57.0 8.4 115 193-311 212-342 (585)
56 PRK09124 pyruvate dehydrogenas 95.7 0.037 8E-07 56.6 8.0 113 193-311 198-323 (574)
57 TIGR00173 menD 2-succinyl-5-en 95.5 0.042 9.2E-07 54.2 7.6 113 193-311 208-336 (432)
58 PRK08611 pyruvate oxidase; Pro 95.2 0.076 1.6E-06 54.4 8.4 112 193-311 200-325 (576)
59 PRK06457 pyruvate dehydrogenas 95.0 0.097 2.1E-06 53.3 8.4 110 193-308 192-314 (549)
60 TIGR02720 pyruv_oxi_spxB pyruv 94.9 0.087 1.9E-06 54.0 7.9 111 198-312 203-326 (575)
61 COG0028 IlvB Thiamine pyrophos 94.8 0.14 3.1E-06 52.3 9.1 117 193-312 197-329 (550)
62 TIGR03393 indolpyr_decarb indo 92.1 0.3 6.5E-06 49.6 6.1 115 193-311 202-334 (539)
63 cd01408 SIRT1 SIRT1: Eukaryoti 90.6 0.36 7.8E-06 43.9 4.5 56 252-307 175-235 (235)
64 PLN02573 pyruvate decarboxylas 90.5 0.83 1.8E-05 47.0 7.5 114 193-311 221-351 (578)
65 cd01412 SIRT5_Af1_CobB SIRT5_A 90.4 0.48 1E-05 42.5 5.0 55 252-308 164-224 (224)
66 PRK00481 NAD-dependent deacety 90.2 0.58 1.3E-05 42.6 5.5 56 254-311 179-240 (242)
67 PRK14138 NAD-dependent deacety 89.8 0.71 1.5E-05 42.2 5.7 58 253-311 179-241 (244)
68 PRK00945 acetyl-CoA decarbonyl 89.5 0.94 2E-05 39.3 5.9 112 198-311 37-171 (171)
69 PTZ00408 NAD-dependent deacety 88.4 1 2.2E-05 41.2 5.6 59 252-311 172-235 (242)
70 TIGR00315 cdhB CO dehydrogenas 85.3 1.6 3.5E-05 37.5 4.9 110 197-309 29-161 (162)
71 PLN02980 2-oxoglutarate decarb 82.6 3.6 7.8E-05 47.6 7.6 111 198-309 527-659 (1655)
72 PRK07449 2-succinyl-5-enolpyru 81.6 5.2 0.00011 40.8 7.7 107 196-306 222-343 (568)
73 PRK12474 hypothetical protein; 80.4 5.3 0.00011 40.4 7.2 37 193-229 198-235 (518)
74 PRK05333 NAD-dependent deacety 79.9 3.7 8.1E-05 38.3 5.5 57 253-311 215-277 (285)
75 TIGR03394 indol_phenyl_DC indo 77.7 5.6 0.00012 40.5 6.4 110 197-311 203-330 (535)
76 PRK07586 hypothetical protein; 75.8 8.6 0.00019 38.7 7.2 36 194-229 195-231 (514)
77 PTZ00409 Sir2 (Silent Informat 72.8 6.8 0.00015 36.4 5.1 57 253-311 200-262 (271)
78 PF01884 PcrB: PcrB family; I 71.6 18 0.0004 32.8 7.4 55 4-60 156-211 (230)
79 COG2120 Uncharacterized protei 71.4 51 0.0011 29.8 10.4 93 1-94 11-120 (237)
80 TIGR01768 GGGP-family geranylg 65.2 20 0.00044 32.4 6.4 55 4-60 152-208 (223)
81 COG0846 SIR2 NAD-dependent pro 64.5 4.7 0.0001 37.1 2.2 58 253-312 183-246 (250)
82 PRK13670 hypothetical protein; 64.5 96 0.0021 30.4 11.4 102 1-107 1-118 (388)
83 TIGR03217 4OH_2_O_val_ald 4-hy 64.1 1.4E+02 0.003 28.6 12.4 88 16-106 114-211 (333)
84 PF10087 DUF2325: Uncharacteri 63.2 37 0.0008 26.0 6.8 73 34-111 2-79 (97)
85 PLN02746 hydroxymethylglutaryl 60.1 1.3E+02 0.0027 29.1 11.2 85 19-106 165-264 (347)
86 TIGR01718 Uridine-psphlse urid 59.5 28 0.00061 31.6 6.4 55 253-310 79-136 (245)
87 cd03174 DRE_TIM_metallolyase D 58.8 1.4E+02 0.0029 26.8 11.9 88 16-106 115-213 (265)
88 TIGR01428 HAD_type_II 2-haloal 55.1 1.3E+02 0.0029 25.5 9.9 90 14-109 93-187 (198)
89 smart00664 DoH Possible catech 55.1 14 0.0003 30.4 3.3 41 241-286 15-55 (148)
90 PF02585 PIG-L: GlcNAc-PI de-N 54.0 1.1E+02 0.0023 24.3 8.3 49 47-95 60-112 (128)
91 PF03351 DOMON: DOMON domain; 51.6 17 0.00037 28.7 3.2 36 243-283 19-54 (124)
92 PRK08195 4-hyroxy-2-oxovalerat 50.0 2.4E+02 0.0052 27.0 12.2 88 16-106 115-212 (337)
93 PRK12581 oxaloacetate decarbox 46.9 3.2E+02 0.007 27.6 12.9 99 2-105 120-228 (468)
94 COG3660 Predicted nucleoside-d 44.4 28 0.0006 32.6 3.7 36 1-40 1-37 (329)
95 PF06849 DUF1246: Protein of u 44.1 1.7E+02 0.0037 24.0 7.8 86 16-111 7-93 (124)
96 COG2222 AgaS Predicted phospho 43.3 44 0.00095 32.2 5.1 95 196-300 39-140 (340)
97 cd05005 SIS_PHI Hexulose-6-pho 42.6 93 0.002 26.4 6.6 88 192-298 29-126 (179)
98 PRK05692 hydroxymethylglutaryl 40.3 3.1E+02 0.0067 25.5 11.9 85 18-105 122-221 (287)
99 PRK02122 glucosamine-6-phospha 39.8 2.5E+02 0.0054 29.6 10.3 45 47-91 476-530 (652)
100 PF13180 PDZ_2: PDZ domain; PD 37.8 43 0.00093 24.5 3.3 40 244-283 3-44 (82)
101 cd07937 DRE_TIM_PC_TC_5S Pyruv 37.5 3.3E+02 0.0072 25.0 12.5 88 16-106 118-215 (275)
102 PRK04169 geranylgeranylglycery 37.5 1E+02 0.0022 28.0 6.3 56 3-60 156-213 (232)
103 PRK11178 uridine phosphorylase 37.2 1.1E+02 0.0023 28.0 6.5 56 253-311 84-142 (251)
104 cd01409 SIRT4 SIRT4: Eukaryoti 37.1 38 0.00083 31.1 3.5 50 253-304 205-260 (260)
105 PF07563 DUF1541: Protein of u 36.8 18 0.00039 25.1 0.9 13 266-278 11-23 (53)
106 PRK03692 putative UDP-N-acetyl 36.4 3.3E+02 0.0072 24.8 11.2 91 16-112 92-187 (243)
107 COG1646 Predicted phosphate-bi 35.8 1.1E+02 0.0025 27.8 6.1 69 3-79 166-236 (240)
108 PRK11557 putative DNA-binding 35.5 41 0.00088 30.8 3.5 96 192-298 124-226 (278)
109 cd07945 DRE_TIM_CMS Leptospira 35.4 3.7E+02 0.008 24.9 11.6 86 18-106 117-214 (280)
110 cd03812 GT1_CapH_like This fam 35.0 3.5E+02 0.0076 24.6 10.4 81 21-112 210-295 (358)
111 PF01972 SDH_sah: Serine dehyd 34.8 2.5E+02 0.0053 26.4 8.3 73 2-78 92-171 (285)
112 PF00682 HMGL-like: HMGL-like 34.5 3.2E+02 0.007 24.1 10.1 87 17-106 109-204 (237)
113 cd07944 DRE_TIM_HOA_like 4-hyd 34.4 3.7E+02 0.008 24.7 12.3 87 16-105 109-205 (266)
114 PF02006 DUF137: Protein of un 34.1 59 0.0013 28.2 3.9 38 274-311 110-147 (178)
115 cd07940 DRE_TIM_IPMS 2-isoprop 34.0 3.6E+02 0.0079 24.5 11.0 88 16-106 114-212 (268)
116 TIGR03134 malonate_gamma malon 33.8 2.4E+02 0.0052 25.7 8.1 74 2-78 68-154 (238)
117 COG0075 Serine-pyruvate aminot 33.4 3.8E+02 0.0082 26.3 9.8 83 30-116 81-170 (383)
118 cd07941 DRE_TIM_LeuA3 Desulfob 33.2 3.9E+02 0.0084 24.5 11.6 86 18-106 121-218 (273)
119 COG1701 Uncharacterized protei 33.0 55 0.0012 29.5 3.6 38 274-311 174-211 (256)
120 TIGR00236 wecB UDP-N-acetylglu 32.0 4.3E+02 0.0093 24.7 11.8 103 1-111 1-114 (365)
121 COG2217 ZntA Cation transport 32.0 1.9E+02 0.004 30.9 7.9 81 12-104 536-617 (713)
122 COG4015 Predicted dinucleotide 32.0 2.3E+02 0.0049 24.7 7.0 26 4-29 109-134 (217)
123 cd07938 DRE_TIM_HMGL 3-hydroxy 32.0 4.1E+02 0.0089 24.5 11.1 89 16-107 114-217 (274)
124 cd03825 GT1_wcfI_like This fam 31.7 1.7E+02 0.0038 26.6 7.1 72 235-310 249-327 (365)
125 PRK13761 hypothetical protein; 31.5 64 0.0014 29.3 3.8 38 274-311 171-208 (248)
126 cd07943 DRE_TIM_HOA 4-hydroxy- 31.2 4E+02 0.0087 24.1 12.5 87 17-106 113-208 (263)
127 KOG1185|consensus 30.7 43 0.00092 33.9 2.8 40 272-312 301-342 (571)
128 PF01745 IPT: Isopentenyl tran 30.4 50 0.0011 30.0 3.0 28 86-113 4-32 (233)
129 PLN03228 methylthioalkylmalate 30.3 6E+02 0.013 25.9 11.6 92 18-114 211-317 (503)
130 PRK14478 nitrogenase molybdenu 30.1 4.9E+02 0.011 26.0 10.4 81 17-111 335-415 (475)
131 COG0324 MiaA tRNA delta(2)-iso 30.1 55 0.0012 31.1 3.3 27 86-112 6-33 (308)
132 PF04007 DUF354: Protein of un 29.9 3.8E+02 0.0082 25.7 9.1 101 1-112 1-108 (335)
133 PRK12344 putative alpha-isopro 29.1 6.1E+02 0.013 25.9 11.0 95 18-115 128-233 (524)
134 TIGR01449 PGP_bact 2-phosphogl 29.0 3E+02 0.0066 23.3 7.8 82 13-96 85-171 (213)
135 PF13167 GTP-bdg_N: GTP-bindin 28.5 64 0.0014 25.1 3.0 59 209-282 7-65 (95)
136 COG3754 RgpF Lipopolysaccharid 28.3 2.2E+02 0.0047 29.5 7.3 90 1-95 1-97 (595)
137 cd07939 DRE_TIM_NifV Streptomy 27.9 4.6E+02 0.0099 23.7 10.9 85 18-105 112-204 (259)
138 TIGR00177 molyb_syn molybdenum 27.8 3.4E+02 0.0074 22.2 8.5 39 69-107 52-92 (144)
139 cd03518 Link_domain_HAPLN_modu 27.8 56 0.0012 25.5 2.5 32 209-240 13-54 (95)
140 TIGR00715 precor6x_red precorr 27.8 3.4E+02 0.0074 24.9 8.2 94 1-112 1-97 (256)
141 COG0299 PurN Folate-dependent 27.7 4.4E+02 0.0095 23.5 10.1 97 1-108 1-102 (200)
142 PF04748 Polysacc_deac_2: Dive 27.3 3.2E+02 0.0069 24.3 7.7 44 75-118 109-152 (213)
143 COG0159 TrpA Tryptophan syntha 27.2 5E+02 0.011 24.1 9.0 84 12-103 75-167 (265)
144 TIGR01454 AHBA_synth_RP 3-amin 27.2 3.7E+02 0.0081 22.8 8.0 79 13-93 75-158 (205)
145 PRK10481 hypothetical protein; 27.0 4.7E+02 0.01 23.6 10.1 83 29-114 129-213 (224)
146 TIGR01704 MTA/SAH-Nsdase 5'-me 26.8 90 0.0019 27.8 4.1 38 251-290 65-105 (228)
147 cd05014 SIS_Kpsf KpsF-like pro 26.8 1.1E+02 0.0023 24.1 4.2 45 253-298 48-98 (128)
148 COG2139 RPL21A Ribosomal prote 26.5 58 0.0013 25.5 2.3 28 236-281 49-76 (98)
149 PRK13374 purine nucleoside pho 26.3 1.4E+02 0.003 26.8 5.3 55 194-280 54-108 (233)
150 TIGR00977 LeuA_rel 2-isopropyl 26.0 7.2E+02 0.016 25.4 12.3 94 19-115 125-230 (526)
151 PRK12475 thiamine/molybdopteri 25.9 4.2E+02 0.0091 25.3 8.7 80 33-113 26-147 (338)
152 COG0462 PrsA Phosphoribosylpyr 25.9 5.9E+02 0.013 24.3 12.3 109 6-115 56-193 (314)
153 PRK15418 transcriptional regul 25.8 2.7E+02 0.0059 26.3 7.3 78 20-102 48-131 (318)
154 PF06722 DUF1205: Protein of u 25.3 63 0.0014 25.2 2.4 35 250-285 38-86 (97)
155 smart00445 LINK Link (Hyaluron 25.1 72 0.0016 24.8 2.7 32 209-240 14-55 (94)
156 TIGR02356 adenyl_thiF thiazole 25.0 4.6E+02 0.01 22.8 8.6 31 33-64 23-55 (202)
157 cd04951 GT1_WbdM_like This fam 25.0 5.2E+02 0.011 23.3 9.2 83 19-112 204-291 (360)
158 PRK11858 aksA trans-homoaconit 24.8 6.4E+02 0.014 24.4 12.4 87 17-106 117-211 (378)
159 cd01410 SIRT7 SIRT7: Eukaryoti 24.1 1.1E+02 0.0024 27.0 4.1 46 253-299 156-206 (206)
160 cd05710 SIS_1 A subgroup of th 23.6 1.3E+02 0.0028 23.8 4.0 46 253-299 48-99 (120)
161 PF03808 Glyco_tran_WecB: Glyc 23.5 4.5E+02 0.0098 22.2 10.5 90 17-111 36-130 (172)
162 PF13419 HAD_2: Haloacid dehal 23.5 3.8E+02 0.0082 21.3 9.0 79 13-93 77-160 (176)
163 cd02812 PcrB_like PcrB_like pr 23.5 2.3E+02 0.0049 25.5 5.9 52 4-60 151-204 (219)
164 PRK14098 glycogen synthase; Pr 23.3 6.3E+02 0.014 25.3 9.8 81 21-111 325-409 (489)
165 PF00107 ADH_zinc_N: Zinc-bind 23.3 2.8E+02 0.006 21.5 6.0 60 19-90 4-65 (130)
166 cd03520 Link_domain_CSPGs_modu 23.1 82 0.0018 24.7 2.6 32 209-240 10-51 (96)
167 PF03596 Cad: Cadmium resistan 22.8 13 0.00028 32.8 -2.1 21 248-268 163-188 (191)
168 PRK09288 purT phosphoribosylgl 22.7 78 0.0017 30.4 3.1 27 276-302 37-63 (395)
169 PLN02334 ribulose-phosphate 3- 22.6 4.6E+02 0.01 23.2 7.9 68 13-82 156-223 (229)
170 TIGR00779 cad cadmium resistan 22.6 39 0.00085 29.9 0.8 22 248-269 163-189 (193)
171 PLN02321 2-isopropylmalate syn 22.5 9.2E+02 0.02 25.4 11.7 93 18-115 212-319 (632)
172 TIGR03127 RuMP_HxlB 6-phospho 22.4 1.3E+02 0.0027 25.5 4.0 89 193-298 27-123 (179)
173 PRK08644 thiamine biosynthesis 22.2 5E+02 0.011 22.9 7.9 32 32-64 29-62 (212)
174 cd03515 Link_domain_TSG_6_like 22.2 80 0.0017 24.6 2.4 32 209-240 13-54 (93)
175 cd00758 MoCF_BD MoCF_BD: molyb 22.1 4.2E+02 0.0091 21.3 7.3 63 45-111 24-88 (133)
176 PRK07143 hypothetical protein; 21.7 6.6E+02 0.014 23.4 9.2 80 14-96 27-121 (279)
177 cd05008 SIS_GlmS_GlmD_1 SIS (S 21.7 1.4E+02 0.0029 23.4 3.8 48 252-300 46-99 (126)
178 TIGR03581 EF_0839 conserved hy 21.7 60 0.0013 29.3 1.8 49 197-245 55-117 (236)
179 TIGR01135 glmS glucosamine--fr 21.2 2.4E+02 0.0052 29.1 6.5 96 193-300 288-391 (607)
180 PF12812 PDZ_1: PDZ-like domai 21.2 2.5E+02 0.0055 20.8 4.9 30 255-284 32-61 (78)
181 cd01413 SIR2_Af2 SIR2_Af2: Arc 21.2 1.1E+02 0.0025 27.2 3.6 45 253-298 172-221 (222)
182 cd00136 PDZ PDZ domain, also c 20.9 1E+02 0.0023 21.2 2.7 31 253-283 13-43 (70)
183 PLN03243 haloacid dehalogenase 20.7 5.9E+02 0.013 23.1 8.3 81 13-95 109-194 (260)
184 PF00455 DeoRC: DeoR C termina 20.6 94 0.002 26.2 2.8 62 72-133 8-73 (161)
185 PRK00331 glucosamine--fructose 20.5 2.2E+02 0.0049 29.3 6.1 96 193-299 286-388 (604)
186 TIGR02090 LEU1_arch isopropylm 20.4 7.7E+02 0.017 23.7 12.5 89 16-107 112-208 (363)
187 PRK00676 hemA glutamyl-tRNA re 20.3 6.8E+02 0.015 24.1 8.8 65 22-91 163-234 (338)
188 cd01102 Link_Domain The link d 20.3 99 0.0021 24.0 2.6 32 209-240 13-54 (92)
189 TIGR01990 bPGM beta-phosphoglu 20.2 3.8E+02 0.0082 22.1 6.6 79 13-95 87-170 (185)
190 PRK13938 phosphoheptose isomer 20.1 1.7E+02 0.0036 25.7 4.4 98 193-297 42-163 (196)
No 1
>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=6.3e-100 Score=704.81 Aligned_cols=306 Identities=48% Similarity=0.689 Sum_probs=274.4
Q ss_pred CCEEEEEEeCCCccChHHHHHHHHHHhcCCcEEEEEEcCCchHHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHH
Q psy9406 1 MPALVIAEHDNSYLKTSTLNTITAATLCSDEIHILIIGYNIEKVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVI 80 (312)
Q Consensus 1 m~ilv~~E~~~g~l~~~slEll~~A~~Lg~~V~av~~G~~~~~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l 80 (312)
|++|||+||.+|+++++|+|+++.|++++ ++.++++|. ....++.. +|+|+||.++++.+++|.+|.|++++.++
T Consensus 1 ~~vlv~~e~~~~~l~~~s~el~~~A~~l~-~v~~vv~g~---~~~~~~~~-~Gad~v~~~~~~~~~~~~~e~~~~~l~~l 75 (313)
T COG2025 1 MKVLVVAEHDGGRLSPVSLELLTAARKLG-DVAAVVIGE---GAAAAAKA-YGADKVLVAEGPELANYLPEPYADALVDL 75 (313)
T ss_pred CeEEEEecCCCCccchhhHHHHHHHHhcC-ceEEEEech---HHHHHHhh-cCCCEEEEEcccchhccchhHHHHHHHHH
Confidence 78999999999999999999999999999 999999998 33334454 89999999999999999999999999999
Q ss_pred HhC--CcEEEEcCCCCcccHHHHHHHHcCCceeeeEEEeeCCC--eEEEEccCceEEEEEEECC-CeEEEEEcCCCCccc
Q psy9406 81 ASN--YSHILAPATIYGKNILPRVAALLNVMQISEITKVCNPS--TFERPIYSGRIIATVQSTD-IIKVITVRATNFISA 155 (312)
Q Consensus 81 ~~~--~~~IL~~aT~~GrdLaprlAarL~~~lvadv~~l~~~~--~~~R~~ygG~~~a~i~~~~-~p~v~Tvr~g~f~~~ 155 (312)
+++ |++||+|+|.+||+|+||+|+||++++++||++++.++ .++||+|||+.++++.+++ +|+|+|+||++|++.
T Consensus 76 ~~~~~p~~il~~aT~~Gk~la~rvAa~l~~~~~~D~~~l~~~~~l~~~Rp~ygG~~i~~~~~~~~~~~v~Tvr~g~~~~~ 155 (313)
T COG2025 76 AKKYKPDVVLLPATTNGKELAPRVAARLDVGLIADVTSLDVGDGLTFTRPIYGGNAIATVISPSGRPAVITVRPGVFAAA 155 (313)
T ss_pred HHhcCCCEEEEcCCCchHHHHHHHHHHcCCCceEEEEEEEcCCccEEEeeccccceeEEEecCCCCceEEEEcccccCCC
Confidence 885 59999999999999999999999999999999999888 9999999999999999954 699999999999986
Q ss_pred ccCCCcceEEEeeccccCCCCceEEEEEEeccCCCCCCCCCcEEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhc
Q psy9406 156 KKEGNKAIIHIISKINYFSNTASIFISRELIKSKRPELTSAKIVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDA 235 (312)
Q Consensus 156 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~ 235 (312)
+..... +++..+.+......+..........+++++|++|++|||+|||++++|||+++++||++|||+||||||+||+
T Consensus 156 ~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~L~~A~iVVsgGRG~gs~enf~~i~~LA~~LGa~VGaSRp~vd~ 234 (313)
T COG2025 156 AAALGG-SVETEKVVAPANAIAVVSTGFSLKKSGRVDLAEAKIVVSGGRGLGSKENFKLLEELADVLGAAVGASRPAVDA 234 (313)
T ss_pred CCCCCC-cceEEEecCccccccceeeeeeeccCCCCccccceEEEEcCcccCChhhhHHHHHHHHHhCceeeccHHHHhc
Confidence 543332 2333333212212233322344567789999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEeccCCceeCCceEEEEeeccchhhhcccCCCcEEEEEcCCCCCCcccccceEEeecHhHHHHHHHhhhC
Q psy9406 236 GYISNNLQIGQTGKIVAPQLYIAIGISGAIQHLSGMKDSKIIVAINQDEDAPIFDISDYGLVGDLFEIIPKFIKYLN 312 (312)
Q Consensus 236 gw~~~~~qIG~sG~~v~P~lYia~GISGa~qH~~G~~~s~~IvAIN~D~~ApIf~~aDygiVgD~~~vlp~l~~~l~ 312 (312)
||+|++||||||||+|+|+||||||||||+|||+||++||+|||||||||||||++||||||||+|+|+|+|+++|+
T Consensus 235 gw~p~d~QVGqTGk~V~P~LYIA~GISGAiQHlaGm~~Sk~IVAINkD~nAPIF~~ADyGiVgDl~~ivP~Lie~l~ 311 (313)
T COG2025 235 GWMPNDRQVGQTGKTVAPKLYIALGISGAIQHLAGMKDSKVIVAINKDPNAPIFQVADYGIVGDLFKIVPALIEALK 311 (313)
T ss_pred CCCCccceecCCCcEecccEEEEEecccHHHHHhhcccCcEEEEEcCCCCCCccccCCeeeeeeHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional
Probab=100.00 E-value=3e-99 Score=715.28 Aligned_cols=312 Identities=46% Similarity=0.722 Sum_probs=279.1
Q ss_pred CCEEEEEEeCCCccChHHHHHHHHHHhcCC---cEEEEEEcCCc--hHHHHHHhhc-CCccEEEEecCCCCCCCCHHHHH
Q psy9406 1 MPALVIAEHDNSYLKTSTLNTITAATLCSD---EIHILIIGYNI--EKVILDAKKV-NNIKKILLVDSLYFSNNLPENIA 74 (312)
Q Consensus 1 m~ilv~~E~~~g~l~~~slEll~~A~~Lg~---~V~av~~G~~~--~~~a~~~~~~-~Gad~V~~~~~~~l~~~~~e~~a 74 (312)
|+||||+||.+|+++++|+|||+.||+|++ +|.++++|++. ++.++++... ||+|+||+++++.|++|+++.|+
T Consensus 27 m~i~V~~E~~~g~l~~~slEll~~Ar~La~~~~~v~avv~g~~~~~~~~a~~l~~~~~Gad~V~~~~~~~l~~y~~e~~a 106 (356)
T PLN00022 27 ISTLVVAEHEGGSVKPQSLSAVAAAKSLLGESSPISLLLAGSGPSLQQAASHAASSHPSVSEVLVADSDKLTHPLAEPWA 106 (356)
T ss_pred CeEEEEEeCcCCEeCHHHHHHHHHHHHhcCCCCceEEEEEcCCcchhhHHHHHhhccCCCCEEEEecCchhcccChHHHH
Confidence 889999999999999999999999999975 79999999763 4666777643 69999999999999999999999
Q ss_pred HHHHHHHh--CCcEEEEcCCCCcccHHHHHHHHcCCceeeeEEEeeCCCeEEEEccCceEEEEEEECC-CeEEEEEcCCC
Q psy9406 75 AQISVIAS--NYSHILAPATIYGKNILPRVAALLNVMQISEITKVCNPSTFERPIYSGRIIATVQSTD-IIKVITVRATN 151 (312)
Q Consensus 75 ~~l~~l~~--~~~~IL~~aT~~GrdLaprlAarL~~~lvadv~~l~~~~~~~R~~ygG~~~a~i~~~~-~p~v~Tvr~g~ 151 (312)
+++.++++ +|++||||+|.+||||+||+|+||++++++||++++.++.++||+|||++++++.+.. +|+|+|+||++
T Consensus 107 ~al~~li~~~~P~~vL~~~T~~GrdlApRlAarL~~gl~aD~~~l~~~~~~~rp~~gG~~~a~i~~~~~~p~~~Tvrpg~ 186 (356)
T PLN00022 107 KLVVLAQQKGGYSHILAASTSFGKNVLPRAAALLDVSPITDVVRILDSNTFVRPIYAGNALATVRYKGSGPCMLSIRPTS 186 (356)
T ss_pred HHHHHHHHhcCCCEEEECCCCchhHHHHHHHHHhCCCeecCEEEEcCCCeEEEEecCCcEEEEEEeCCCCcEEEEECCCc
Confidence 99999976 6899999999999999999999999999999999986568999999999999999976 59999999999
Q ss_pred CcccccCC----CcceEEEeeccc--cCCCCceEEEEEEeccCCCCCCCCCcEEEEeCccCCCccchHHHHHHHHHhCCe
Q psy9406 152 FISAKKEG----NKAIIHIISKIN--YFSNTASIFISRELIKSKRPELTSAKIVVAGGRGLGSSKNFKILEGLADKLNAA 225 (312)
Q Consensus 152 f~~~~~~~----~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~A~vvV~~GrG~~~~e~~~~~~~LA~~lga~ 225 (312)
|++.+.+. ..++++.++.+. .......++++.....+..++|++|++||++|||++++|||+++++||++|||+
T Consensus 187 f~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~vVVsgGRGv~~~en~~l~eeLA~~LGaa 266 (356)
T PLN00022 187 FPVTPALANSESNEAPISQVDLSLLDEDSVGKSRWVGLSVQDTERPDLGSAKVVVTGGRGLKSAENFKMLEKLADKLGGA 266 (356)
T ss_pred cccccccccccCCCcceEEeccccccccccCceEEEEEEccccCCCCcccCCEEEECCCccCCHHHHHHHHHHHHHhCCc
Confidence 98765433 344565554321 111234555665555555799999999999999999999999999999999999
Q ss_pred eeecHhhHhcCCCCCCeEeccCCceeCCceEEEEeeccchhhhcccCCCcEEEEEcCCCCCCcccccceEEeecHhHHHH
Q psy9406 226 IGASRAAVDAGYISNNLQIGQTGKIVAPQLYIAIGISGAIQHLSGMKDSKIIVAINQDEDAPIFDISDYGLVGDLFEIIP 305 (312)
Q Consensus 226 vg~SRp~vd~gw~~~~~qIG~sG~~v~P~lYia~GISGa~qH~~G~~~s~~IvAIN~D~~ApIf~~aDygiVgD~~~vlp 305 (312)
+|||||+||+||+|+++|||||||+|+|+||||||||||+||++||++|++|||||||||||||++||||||||++||||
T Consensus 267 vGaSRp~vD~GW~p~~~QIGqTGk~V~P~lYIA~GISGAiQH~~Gm~~s~~IVAIN~D~~APIF~~ADygIVgD~~evlP 346 (356)
T PLN00022 267 VGASRAAVDAGFVPNDLQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKVIVAINKDADAPIFQVADYGLVADLFEAVP 346 (356)
T ss_pred eeccHHHHhCCCCChHheeccCCCCcCCcEEEEEecchHHHHHhhcccCCEEEEECCCCCCCchhhcCeeEeeeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhC
Q psy9406 306 KFIKYLN 312 (312)
Q Consensus 306 ~l~~~l~ 312 (312)
+|+|+||
T Consensus 347 ~Lie~lk 353 (356)
T PLN00022 347 ELLEKLP 353 (356)
T ss_pred HHHHHHH
Confidence 9999986
No 3
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional
Probab=100.00 E-value=7.5e-96 Score=682.77 Aligned_cols=298 Identities=24% Similarity=0.389 Sum_probs=263.5
Q ss_pred EEEEEEeCCCccChHHHHHHHHHHhcCCcEEEEEEcCCchHHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHHHh
Q psy9406 3 ALVIAEHDNSYLKTSTLNTITAATLCSDEIHILIIGYNIEKVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVIAS 82 (312)
Q Consensus 3 ilv~~E~~~g~l~~~slEll~~A~~Lg~~V~av~~G~~~~~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l~~ 82 (312)
||||+|+++ .+ +||++.|++|++++.++++|++ .++++.. ||+|+||+++++.++ |++|.|+++|.++++
T Consensus 7 v~V~aE~~~-~~----~Ell~~a~~l~~~v~av~~g~~---~~~~~~~-~Gad~V~~~~~~~~~-~~~e~~~~al~~~i~ 76 (313)
T PRK03363 7 VWVFSDTPS-RL----PELMNGAQALANQINAFVLNDA---DGAQAIQ-LGANHVWKLSGKPDD-RMIEDYAGVMADTIR 76 (313)
T ss_pred EEEEEEeCC-cH----HHHHHHHHHhcCceEEEEECcc---hHHHHHh-cCCCEEEEecCcccc-cChHHHHHHHHHHHH
Confidence 999999655 33 5999999999888999999953 2345655 899999999998655 999999999999976
Q ss_pred --CC-cEEEEcCCCCcccHHHHHHHHcCCceeeeEEEeeCC--C-eEEEEccCceEEEEEEECCCeEEEEEcCCCCcccc
Q psy9406 83 --NY-SHILAPATIYGKNILPRVAALLNVMQISEITKVCNP--S-TFERPIYSGRIIATVQSTDIIKVITVRATNFISAK 156 (312)
Q Consensus 83 --~~-~~IL~~aT~~GrdLaprlAarL~~~lvadv~~l~~~--~-~~~R~~ygG~~~a~i~~~~~p~v~Tvr~g~f~~~~ 156 (312)
+| ++||||+|.+||+|+||||+||++++++||++|+.+ + .++||+|||++++++++..+|+|+|+|||+|++.+
T Consensus 77 ~~~p~~~vl~~~T~~Gr~laprlAa~l~~gl~~D~~~l~~~~~~l~~~rp~~gG~~~a~~~~~~~~~v~tvrpg~f~~~~ 156 (313)
T PRK03363 77 QHGADGLVLLPNTRRGKLLAAKLGYRLKAAVSNDASTVSVQDGKATVKHMVYGGLAIGEERIATPYAVLTISSGTFDAAQ 156 (313)
T ss_pred hhCCCcEEEEcCCccHHHHHHHHHHHhCCCcccceEEEEecCCCcEEEEeccCCcEEEEEEECCCCeEEEECCCCccCCc
Confidence 57 799999999999999999999999999999999843 2 68999999999999999888999999999999776
Q ss_pred cCCC-cceEEEeeccccCCCCceEEEEEEeccCCCCCCCCCcEEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhc
Q psy9406 157 KEGN-KAIIHIISKINYFSNTASIFISRELIKSKRPELTSAKIVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDA 235 (312)
Q Consensus 157 ~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~ 235 (312)
.+.. +++++.+... .+....+.+.....+++.+||++||+|||+|||++++|||+++|+||++|||++|||||+||.
T Consensus 157 ~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~v~L~~A~vVVsgGRG~~~~E~~~l~eeLA~~LGaavg~SRp~vd~ 234 (313)
T PRK03363 157 PDASRTGETHTVEWQ--APAVAITRTATQARQSNSVDLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAEN 234 (313)
T ss_pred cCCCCCcceEEeccc--CCCcceEEEEEecccCCCCCcccCCEEEEcCCCCCCHHHHHHHHHHHHHhCCeEEecHHHHcc
Confidence 5443 5567665542 223345555555554567999999999999999999999999999999999999999999986
Q ss_pred -CCCCCCeEeccCCceeCCceEEEEeeccchhhhcccCCCcEEEEEcCCCCCCcccccceEEeecHhHHHHHHHhhhC
Q psy9406 236 -GYISNNLQIGQTGKIVAPQLYIAIGISGAIQHLSGMKDSKIIVAINQDEDAPIFDISDYGLVGDLFEIIPKFIKYLN 312 (312)
Q Consensus 236 -gw~~~~~qIG~sG~~v~P~lYia~GISGa~qH~~G~~~s~~IvAIN~D~~ApIf~~aDygiVgD~~~vlp~l~~~l~ 312 (312)
||+|++||||||||+|+|+||||||||||+||++||++||+|||||||||||||++||||||||++||||+|+|+||
T Consensus 235 ~gW~p~~~QIGqTGk~V~P~lYiA~GISGaiQH~~Gm~~s~~IVAIN~Dp~APIF~~ADygiVgD~~eilP~L~e~l~ 312 (313)
T PRK03363 235 EKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAALA 312 (313)
T ss_pred CCCCCHHheecCCCCCcCccEEEEEccccHHHHHhhcccCCEEEEEcCCCCCCchhhCCeeEeeeHHHHHHHHHHHhh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999986
No 4
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=100.00 E-value=2e-93 Score=666.26 Aligned_cols=298 Identities=26% Similarity=0.408 Sum_probs=259.4
Q ss_pred EEEEEEeCCCccChHHHHHHHHHHhcCCcEEEEEEcCCchHHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHHHh
Q psy9406 3 ALVIAEHDNSYLKTSTLNTITAATLCSDEIHILIIGYNIEKVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVIAS 82 (312)
Q Consensus 3 ilv~~E~~~g~l~~~slEll~~A~~Lg~~V~av~~G~~~~~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l~~ 82 (312)
||||+| .++. .+||++.|+++++++.++++|+ ..++++.. ||+|+||+++++. ..|.+|.|++++.++++
T Consensus 7 i~V~~e-~~~~----~~Ell~~A~~l~~~v~~vv~g~---~~~~~l~~-~Gad~V~~~~~~~-~~~~~e~~~~al~~~i~ 76 (312)
T PRK11916 7 VWVFSD-NPER----YAELFGGAQQWGQQVYAIVQNT---DQAQAVMP-YGPKCIYVLEQND-ALQRTENYAESIAALLK 76 (312)
T ss_pred EEEEEe-cCCc----HHHHHHHHHHcCCcEEEEEECh---hHHHHHHh-cCCCEEEEeCCcc-cccChHHHHHHHHHHHH
Confidence 999999 4444 4599999999988899999995 23456655 8999999999983 45679999999999976
Q ss_pred --CCcEEEEcCCCCcccHHHHHHHHcCCceeeeEEEeeCC-C--eEEEEccCceEEEEEEECCCeEEEEEcCCCCccccc
Q psy9406 83 --NYSHILAPATIYGKNILPRVAALLNVMQISEITKVCNP-S--TFERPIYSGRIIATVQSTDIIKVITVRATNFISAKK 157 (312)
Q Consensus 83 --~~~~IL~~aT~~GrdLaprlAarL~~~lvadv~~l~~~-~--~~~R~~ygG~~~a~i~~~~~p~v~Tvr~g~f~~~~~ 157 (312)
+|++||||+|.+||||+||+|+||++++++||++|+.+ + .++||.|||++++++.++.+|+|+|+|||+|++.+.
T Consensus 77 ~~~P~~vL~~~T~~Grdla~rlAarL~~gl~~d~~~l~~~~~~~~~~rp~~gG~~~a~i~~~~~p~v~tvrpg~f~~~~~ 156 (312)
T PRK11916 77 DKHPAMLLLAATKRGKALAARLSVQLNAALVNDATAVDIVDGHICAEHRMYGGLAFAQEKINSPLAIITLAPGVQEPCTS 156 (312)
T ss_pred hcCCCEEEECCCcchHHHHHHHHHHhCCCcccceEEEEecCCCeEEEEEcCCCcEEEEEEECCCCeEEEECCCCcCCCcC
Confidence 58999999999999999999999999999999999843 2 589999999999999998889999999999997755
Q ss_pred CCC-cceEEEeeccccCCCCceEEEEEEeccCCCCCCCCCcEEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhc-
Q psy9406 158 EGN-KAIIHIISKINYFSNTASIFISRELIKSKRPELTSAKIVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDA- 235 (312)
Q Consensus 158 ~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~- 235 (312)
+.. ..+++.+.. .......+.+.........++|++||+|||+|||++++|||+++++||++|||++|||||+||.
T Consensus 157 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~L~~A~vVV~~GrG~~~~e~~~~~~~LA~~LGaavG~SRp~vd~~ 234 (312)
T PRK11916 157 DTSHQCPTETVPY--VAPRHEILCRERRAKAASSVDLSKAKRVVGVGRGLAAQDDLKMVHELAAVLNAEVGCSRPIAEGE 234 (312)
T ss_pred CCCCCcceEEecc--cCCcceEEEEEeecccCCCCCcccCCEEEECCCCCCChHHHHHHHHHHHHhCCEEEecHHHHccC
Confidence 443 445554443 1112223333333334446899999999999999999999999999999999999999999995
Q ss_pred CCCCCCeEeccCCceeCCceEEEEeeccchhhhcccCCCcEEEEEcCCCCCCcccccceEEeecHhHHHHHHHhhhC
Q psy9406 236 GYISNNLQIGQTGKIVAPQLYIAIGISGAIQHLSGMKDSKIIVAINQDEDAPIFDISDYGLVGDLFEIIPKFIKYLN 312 (312)
Q Consensus 236 gw~~~~~qIG~sG~~v~P~lYia~GISGa~qH~~G~~~s~~IvAIN~D~~ApIf~~aDygiVgD~~~vlp~l~~~l~ 312 (312)
||+|+++|||||||+|+|+||||||||||+||++||++|++|||||+|||||||++||||||+|+++|+|+|+++||
T Consensus 235 gW~p~~~QIGqTGk~V~P~lYiA~GISGAiQH~aGm~~s~~IVAIN~Dp~APIF~~ADygiVgD~~~vlP~L~e~l~ 311 (312)
T PRK11916 235 NWMERERYIGVSGVLLKSDLYLTLGISGQIQHMVGGNGAKVIVAINKDKNAPIFNYADYGLVGDIYKVVPALISQLS 311 (312)
T ss_pred CCCChhcEECCCCCCcCccEEEEeccccHHHHHhhcccCCEEEEECCCCCCCchhhCCeeEeeeHHHHHHHHHHHhh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999986
No 5
>KOG3954|consensus
Probab=100.00 E-value=2.8e-90 Score=612.36 Aligned_cols=310 Identities=53% Similarity=0.805 Sum_probs=289.3
Q ss_pred CEEEEEEeCCCccChHHHHHHHHHHhcCCcEEEEEEcCCchHHHHHHhhcCC-ccEEEEecCCCCCCCCHHHHHHHHHHH
Q psy9406 2 PALVIAEHDNSYLKTSTLNTITAATLCSDEIHILIIGYNIEKVILDAKKVNN-IKKILLVDSLYFSNNLPENIAAQISVI 80 (312)
Q Consensus 2 ~ilv~~E~~~g~l~~~slEll~~A~~Lg~~V~av~~G~~~~~~a~~~~~~~G-ad~V~~~~~~~l~~~~~e~~a~~l~~l 80 (312)
+.|+++||.+|.++|.|+.++++|++||++|++++.|...+..++++++.+| +.||++.+++.|++..+|.+++++.+.
T Consensus 22 StLv~aEh~~g~l~p~tls~i~AA~klg~~vs~lv~Gs~~~k~ae~~ak~~~~v~kvlvae~~k~~~~lpe~lapl~~~~ 101 (336)
T KOG3954|consen 22 STLVLAEHQNGSLSPITLSTITAAKKLGGDVSVLVAGSKASKAAEALAKVVGDVKKVLVAEDDKLEGNLPEQLAPLLLAN 101 (336)
T ss_pred heEEEEeccCCcccchhhHHHHHHHHcCCceEEEEecCcchHHHHHHHhhccchheEEEeecchhcccchHHhHHHHHHH
Confidence 3799999999999999999999999999999999999988888899988888 999999999999999999999999998
Q ss_pred Hh--CCcEEEEcCCCCcccHHHHHHHHcCCceeeeEEEeeCCCeEEEEccCceEEEEEEECCCeEEEEEcCCCCcccccC
Q psy9406 81 AS--NYSHILAPATIYGKNILPRVAALLNVMQISEITKVCNPSTFERPIYSGRIIATVQSTDIIKVITVRATNFISAKKE 158 (312)
Q Consensus 81 ~~--~~~~IL~~aT~~GrdLaprlAarL~~~lvadv~~l~~~~~~~R~~ygG~~~a~i~~~~~p~v~Tvr~g~f~~~~~~ 158 (312)
.+ +|++|+.+++.+||.+.||+|++|+...++|++.+...++|+||+|.||++.|++|..++.++|+|..+|+|.+..
T Consensus 102 ~kq~~yshi~a~~SafGK~vlPRvaA~lDV~pIsdvi~i~s~dtFvRpiYAGNa~~tv~~~~~~k~ltvR~tsF~~a~~s 181 (336)
T KOG3954|consen 102 QKQFDYSHILAGSSAFGKNVLPRVAAKLDVSPISDVIGIKSADTFVRPIYAGNAICTVKCKAPIKLLTVRATSFPPAATS 181 (336)
T ss_pred HhcCCeeEEEeccccccccchhhHHhhhcccchhheeEeccCcceeeeeeccceEEEEEcCCCceEEEEecccCCCcccC
Confidence 87 5789999999999999999999999999999999999999999999999999999999999999999999998655
Q ss_pred CCcceEEEeeccccCCCCceEEEEEEeccCCCCCCCCCcEEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCC
Q psy9406 159 GNKAIIHIISKINYFSNTASIFISRELIKSKRPELTSAKIVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYI 238 (312)
Q Consensus 159 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~ 238 (312)
++++..+.-.. -.......+|++.+..++++++|+.|++||+||||+++.|||+|+..||++|||+||+||.+||+||+
T Consensus 182 g~s~a~~~~~s-~~~~~~~se~v~~~ltkseRPdL~sAkvVVsGGR~LKs~enFkll~~LAdklgaavGAtRaaVDaGyv 260 (336)
T KOG3954|consen 182 GGSAATEVAPS-DDKPVSLSEWVSQELTKSERPDLTSAKVVVSGGRGLKSGENFKLLYDLADKLGAAVGATRAAVDAGYV 260 (336)
T ss_pred CCCcceeeccC-CCChhHHHHHHHhhcccccCCccccceEEEECCcccCCcccceehHHHHHHhchhhchhhhhhccCcC
Confidence 55543332221 13345667888888888899999999999999999999999999999999999999999999999999
Q ss_pred CCCeEeccCCceeCCceEEEEeeccchhhhcccCCCcEEEEEcCCCCCCcccccceEEeecHhHHHHHHHhhhC
Q psy9406 239 SNNLQIGQTGKIVAPQLYIAIGISGAIQHLSGMKDSKIIVAINQDEDAPIFDISDYGLVGDLFEIIPKFIKYLN 312 (312)
Q Consensus 239 ~~~~qIG~sG~~v~P~lYia~GISGa~qH~~G~~~s~~IvAIN~D~~ApIf~~aDygiVgD~~~vlp~l~~~l~ 312 (312)
|.+.|||||||.|+|+||||+|||||+||++|||+||+|||||+|||||||+.||||+|||+|+++|+|+|+|.
T Consensus 261 pNdlQiGQTGKIVAPeLYiAvGisGAIQHLAGmKDSKvIvAINkDpdAPIFqvAD~GlvgDLfkiVPELtekL~ 334 (336)
T KOG3954|consen 261 PNDLQIGQTGKIVAPELYIAVGISGAIQHLAGMKDSKVIVAINKDPDAPIFQVADYGLVGDLFKIVPELTEKLP 334 (336)
T ss_pred CCccccccccceeccceEEEEeccHHHHHhhcCccceEEEEecCCCCCCceeeecccchhhHHHHhHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999984
No 6
>PF00766 ETF_alpha: Electron transfer flavoprotein FAD-binding domain; InterPro: IPR014731 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the C-terminal domain of the alpha subunit of both Group I and Group II ETFs.; PDB: 1O96_D 3CLR_D 1O97_D 3CLT_D 3CLU_D 3CLS_D 2A1U_A 2A1T_R 1EFV_A 1EFP_C ....
Probab=100.00 E-value=4.4e-45 Score=276.88 Aligned_cols=86 Identities=64% Similarity=1.027 Sum_probs=70.2
Q ss_pred CCCCCCCcEEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCCCeEeccCCceeCCceEEEEeeccchhhhc
Q psy9406 190 RPELTSAKIVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISNNLQIGQTGKIVAPQLYIAIGISGAIQHLS 269 (312)
Q Consensus 190 ~~~l~~A~vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~~~qIG~sG~~v~P~lYia~GISGa~qH~~ 269 (312)
.++|++|++||++|||++++|||+++++||++|||++|||||++|+||+|++|||||||++|+|+||||||||||+||++
T Consensus 1 ~v~L~~A~~VV~~GrG~~~~e~~~l~~~LA~~lga~vg~SRp~vd~gw~p~~~qIG~sG~~v~P~lyia~GISGa~qH~~ 80 (86)
T PF00766_consen 1 KVDLEEAEVVVAGGRGVGSKENFELIEELAEALGAAVGASRPVVDAGWIPRERQIGQSGKTVAPKLYIAFGISGAIQHLA 80 (86)
T ss_dssp -S-TCCSSEEEEE-GGG-STGGCHHHHHHHHHHT-EEEE-HHHHHTTSS-GGGBBSTTSB--T-SEEEEES----HHHHT
T ss_pred CCCcccCCEEEEcCCCCCCHHHHHHHHHHHHHhCCchhccHHHHhCCCCchhhhcCCCCcEEeeeeeEeecchhhHHHHh
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCc
Q psy9406 270 GMKDSK 275 (312)
Q Consensus 270 G~~~s~ 275 (312)
||++||
T Consensus 81 Gi~~s~ 86 (86)
T PF00766_consen 81 GIKDSK 86 (86)
T ss_dssp TTTT-S
T ss_pred hhhcCC
Confidence 999986
No 7
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=100.00 E-value=6.9e-34 Score=245.32 Aligned_cols=159 Identities=40% Similarity=0.534 Sum_probs=146.1
Q ss_pred CEEEEEEeCCCccChHHHHHHHHHHhcCCcEEEEEEcCCchHHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHHH
Q psy9406 2 PALVIAEHDNSYLKTSTLNTITAATLCSDEIHILIIGYNIEKVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVIA 81 (312)
Q Consensus 2 ~ilv~~E~~~g~l~~~slEll~~A~~Lg~~V~av~~G~~~~~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l~ 81 (312)
+||||+||++|++++.++|+++.|++|+++|.++++|++.++.++++.. +|+|+||+++++.+..|+++.|+++|.+++
T Consensus 1 ~ilV~~E~~~g~l~~~s~el~~~A~~l~~~v~~v~~G~~~~~~~~~~~~-~Gad~v~~~~~~~~~~~~~~~~a~al~~~i 79 (168)
T cd01715 1 SVLVLAEHRNGELRELTLEAVTAARKLGGEVTALVIGSGAEAVAAALKA-YGADKVLVAEDPALAHYLAEPYAPALVALA 79 (168)
T ss_pred CEEEEEEecCCChHHHHHHHHHHHHHhCCCEEEEEECCChHHHHHHHHh-cCCCEEEEecChhhcccChHHHHHHHHHHH
Confidence 5899999999999999999999999998889999999887666777775 899999999999999999999999999997
Q ss_pred h--CCcEEEEcCCCCcccHHHHHHHHcCCceeeeEEEeeCCCeEEEEccCceEEEEEEECCCeEEEEEcCCCCcccccCC
Q psy9406 82 S--NYSHILAPATIYGKNILPRVAALLNVMQISEITKVCNPSTFERPIYSGRIIATVQSTDIIKVITVRATNFISAKKEG 159 (312)
Q Consensus 82 ~--~~~~IL~~aT~~GrdLaprlAarL~~~lvadv~~l~~~~~~~R~~ygG~~~a~i~~~~~p~v~Tvr~g~f~~~~~~~ 159 (312)
+ +|++||+|+|.+||+++||||+|||+++++||++++....++|+.|||++++++++.++|+|+|+|||+|++.+..+
T Consensus 80 ~~~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~~l~~~~~~~r~~~gG~~~~~~~~~~~p~v~tv~~g~f~~~~~~~ 159 (168)
T cd01715 80 KKEKPSHILAGATSFGKDLAPRVAAKLDVGLISDVTALEDDLTFTRPIYAGNALATVKSPDRPKVATVRPGAFPAAAAGG 159 (168)
T ss_pred HhcCCCEEEECCCccccchHHHHHHHhCCCceeeEEEEccCcEEEccccCceEEEEEEeCCCCeEEEEcCCcccCCCCCC
Confidence 7 68999999999999999999999999999999999875689999999999999999888999999999999865444
Q ss_pred Cc
Q psy9406 160 NK 161 (312)
Q Consensus 160 ~~ 161 (312)
..
T Consensus 160 ~~ 161 (168)
T cd01715 160 GS 161 (168)
T ss_pred Cc
Confidence 33
No 8
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=99.98 E-value=3.4e-31 Score=230.93 Aligned_cols=156 Identities=37% Similarity=0.448 Sum_probs=142.0
Q ss_pred CEEEEEEeCCCc----cChHHHHHHHHHHhcC---CcEEEEEEcCCchHHH-HHHhhcCCccEEEEecCCCCCCCCHHHH
Q psy9406 2 PALVIAEHDNSY----LKTSTLNTITAATLCS---DEIHILIIGYNIEKVI-LDAKKVNNIKKILLVDSLYFSNNLPENI 73 (312)
Q Consensus 2 ~ilv~~E~~~g~----l~~~slEll~~A~~Lg---~~V~av~~G~~~~~~a-~~~~~~~Gad~V~~~~~~~l~~~~~e~~ 73 (312)
+||||+||.+|. +++.++|+++.|++|+ ++|.++++|++.++.+ +++.. +|+|+||+++++.+.+|+++.|
T Consensus 1 ~ilV~~e~~~~~~~~~l~~~~~e~l~~A~~l~~~~~~v~~v~~G~~~~~~~~~~~~~-~Gad~v~~~~~~~~~~~~~~~~ 79 (181)
T cd01985 1 KILVLVEHVPDTAELVLNPLDLEAVEAALRLKEYGGEVTALVIGPPAAEVALREALA-MGADKVLLVEDPALAGYDPEAT 79 (181)
T ss_pred CEEEEEEEEcCCCccccCHhhHHHHHHHHHHhhcCCeEEEEEECChHHHHHHHHHHH-hCCCEEEEEecCcccCCChHHH
Confidence 699999999999 9999999999999997 7899999998765544 55554 8999999999999999999999
Q ss_pred HHHHHHHHh--CCcEEEEcCCCCcccHHHHHHHHcCCceeeeEEEeeCCC---eEEEEccCceEEEEEEECCCeEEEEEc
Q psy9406 74 AAQISVIAS--NYSHILAPATIYGKNILPRVAALLNVMQISEITKVCNPS---TFERPIYSGRIIATVQSTDIIKVITVR 148 (312)
Q Consensus 74 a~~l~~l~~--~~~~IL~~aT~~GrdLaprlAarL~~~lvadv~~l~~~~---~~~R~~ygG~~~a~i~~~~~p~v~Tvr 148 (312)
+++|.++++ +|++||+|+|..||+++||||+||++|+++||++++.++ .++|+.|||+.++++++.+.|+|+|+|
T Consensus 80 a~~l~~~i~~~~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsdv~~l~~~~~~~~~~r~~~~g~~~~~~~~~~~p~v~tv~ 159 (181)
T cd01985 80 AKALAALIKKEKPDLILAGATSIGKQLAPRVAALLGVPQISDVTKLEIDGGDLTVTRPIYAGNGLETVESPDLPAVITVR 159 (181)
T ss_pred HHHHHHHHHHhCCCEEEECCcccccCHHHHHHHHhCCCcceeEEEEEEeCCEEEEEEEccCCCeEEEEEECCCCEEEEec
Confidence 999999976 689999999999999999999999999999999997542 689999999999999998889999999
Q ss_pred CCCCcccccC
Q psy9406 149 ATNFISAKKE 158 (312)
Q Consensus 149 ~g~f~~~~~~ 158 (312)
|++|+|.++.
T Consensus 160 ~~~~~~~~~~ 169 (181)
T cd01985 160 PGAFEPRYPS 169 (181)
T ss_pred CCCCCCCCCC
Confidence 9999987543
No 9
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=99.97 E-value=5.7e-31 Score=225.95 Aligned_cols=153 Identities=25% Similarity=0.400 Sum_probs=130.1
Q ss_pred CEEEEEEeCCCccChHHHHHHHHHHhcC----CcEEEEEEcC-C-chHHHHHHhhcCCccEEEEecCCCCCCCCHHHHHH
Q psy9406 2 PALVIAEHDNSYLKTSTLNTITAATLCS----DEIHILIIGY-N-IEKVILDAKKVNNIKKILLVDSLYFSNNLPENIAA 75 (312)
Q Consensus 2 ~ilv~~E~~~g~l~~~slEll~~A~~Lg----~~V~av~~G~-~-~~~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~ 75 (312)
+||||+||.+|++++.++|++++|++|+ .+++++++|+ . .++.++++...+|+|+||+++++.+.+|+++.|++
T Consensus 1 ~ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~G~d~v~~~~~~~~~~~~~~~~a~ 80 (164)
T PF01012_consen 1 NILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKYGADKVYHIDDPALAEYDPEAYAD 80 (164)
T ss_dssp EEEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHSTTESEEEEEE-GGGTTC-HHHHHH
T ss_pred CEEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhcCCcEEEEecCccccccCHHHHHH
Confidence 6999999999999999999999999994 4899999995 2 23333344444899999999999999999999999
Q ss_pred HHHHHHh--CCcEEEEcCCCCcccHHHHHHHHcCCceeeeEEEeeCCC---eEEEEccCceEEEEEEECCCeEEEEEcCC
Q psy9406 76 QISVIAS--NYSHILAPATIYGKNILPRVAALLNVMQISEITKVCNPS---TFERPIYSGRIIATVQSTDIIKVITVRAT 150 (312)
Q Consensus 76 ~l~~l~~--~~~~IL~~aT~~GrdLaprlAarL~~~lvadv~~l~~~~---~~~R~~ygG~~~a~i~~~~~p~v~Tvr~g 150 (312)
+|.++++ +|++||+|+|..||+++||||++|++++++||++++.++ .++|++|||+.+++++++++|.|+|++||
T Consensus 81 ~l~~~~~~~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~~l~~~~~~~~~~r~~~gG~~~~~~~~~~~~~v~tv~~g 160 (164)
T PF01012_consen 81 ALAELIKEEGPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVTDLEVEDGGLVVTRPVYGGKVVATVRLPSPPAVVTVRPG 160 (164)
T ss_dssp HHHHHHHHHT-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEETTTTEEEEEECSSSSEEEEE-TT
T ss_pred HHHHHHHhcCCCEEEEcCcCCCCcHHHHHHHHhCCCccceEEEEEECCCeEEEEEECCCCEEEEEEECCCCCEEEEEeCC
Confidence 9999987 589999999999999999999999999999999998654 79999999999999999989999999999
Q ss_pred CCcc
Q psy9406 151 NFIS 154 (312)
Q Consensus 151 ~f~~ 154 (312)
+|+|
T Consensus 161 ~f~P 164 (164)
T PF01012_consen 161 AFEP 164 (164)
T ss_dssp SS--
T ss_pred CcCc
Confidence 9986
No 10
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=99.92 E-value=5.1e-24 Score=189.17 Aligned_cols=143 Identities=20% Similarity=0.160 Sum_probs=122.8
Q ss_pred CCCccChHHHHHHHHHHhc----CCcEEEEEEcCC-chHHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHHHh--
Q psy9406 10 DNSYLKTSTLNTITAATLC----SDEIHILIIGYN-IEKVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVIAS-- 82 (312)
Q Consensus 10 ~~g~l~~~slEll~~A~~L----g~~V~av~~G~~-~~~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l~~-- 82 (312)
-...+.+.+.++++.++++ ++++.++++|++ .+..++++.. ||+|+||+++++.+.+|+++.|+++|.++++
T Consensus 29 ~~~vi~e~~~~~l~ea~~la~~~g~~v~av~~G~~~~~~~~~~l~~-~G~d~V~~~~~~~~~~~~~e~~a~al~~~i~~~ 107 (202)
T cd01714 29 VPLIINPYDEYAVEEALRLKEKYGGEVTVVSMGPPQAEEALREALA-MGADRAILVSDRAFAGADTLATAKALAAAIKKI 107 (202)
T ss_pred CCccCChHhHHHHHHHHHhhhhcCCEEEEEEECCHHHHHHHHHHHH-cCCCEEEEEecccccCCChHHHHHHHHHHHHHh
Confidence 3456777888888777776 468999999986 4566667765 8999999999999999999999999999865
Q ss_pred CCcEEEEcCCCC---cccHHHHHHHHcCCceeeeEEEeeCC-C--eEEEEccCceEEEEEEECCCeEEEEEcCCCCcccc
Q psy9406 83 NYSHILAPATIY---GKNILPRVAALLNVMQISEITKVCNP-S--TFERPIYSGRIIATVQSTDIIKVITVRATNFISAK 156 (312)
Q Consensus 83 ~~~~IL~~aT~~---GrdLaprlAarL~~~lvadv~~l~~~-~--~~~R~~ygG~~~a~i~~~~~p~v~Tvr~g~f~~~~ 156 (312)
+|++||+|+|.. ||+++||+|+|||+++++||++++.+ + .++|+.|||+. +++++ .|+|+|+||++|++.+
T Consensus 108 ~p~lVL~~~t~~~~~grdlaprlAarLga~lvsdv~~l~~~~~~~~~~r~~~gG~~--~~~~~-~p~VitVr~g~f~~~~ 184 (202)
T cd01714 108 GVDLILTGKQSIDGDTGQVGPLLAELLGWPQITYVSKIEIEGGKVTVERELEGGVE--TVEVK-LPAVITVDLGINEPRY 184 (202)
T ss_pred CCCEEEEcCCcccCCcCcHHHHHHHHhCCCccceEEEEEEeCCEEEEEEEcCCcEE--EEEec-CCEEEEEECCCCCCCC
Confidence 689999999995 89999999999999999999999743 3 58999999994 67776 7899999999998765
No 11
>PRK12342 hypothetical protein; Provisional
Probab=99.53 E-value=1.2e-12 Score=119.93 Aligned_cols=140 Identities=19% Similarity=0.221 Sum_probs=116.2
Q ss_pred ccChHHHHHHHHHHhc---CCcEEEEEEcCCc--hH-HHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHHHh--CC
Q psy9406 13 YLKTSTLNTITAATLC---SDEIHILIIGYNI--EK-VILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVIAS--NY 84 (312)
Q Consensus 13 ~l~~~slEll~~A~~L---g~~V~av~~G~~~--~~-~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l~~--~~ 84 (312)
.++|.++..+++|.+| |++|+++.+|+.. +. +.+++.+ +|+|+.|++.++.|...++.+.+.+|++.++ +|
T Consensus 32 ~iNp~D~~AlE~AlrLk~~g~~Vtvls~Gp~~a~~~~l~r~ala-mGaD~avli~d~~~~g~D~~ata~~La~~i~~~~~ 110 (254)
T PRK12342 32 KISQFDLNAIEAASQLATDGDEIAALTVGGSLLQNSKVRKDVLS-RGPHSLYLVQDAQLEHALPLDTAKALAAAIEKIGF 110 (254)
T ss_pred cCChhhHHHHHHHHHHhhcCCEEEEEEeCCChHhHHHHHHHHHH-cCCCEEEEEecCccCCCCHHHHHHHHHHHHHHhCC
Confidence 5899999999999998 5799999999865 33 3366665 8999999999999999999999999999877 58
Q ss_pred cEEEEcCCC-Cc--ccHHHHHHHHcCCceeeeEEEeeCCC---eEEEEccCceEEEEEEECCCeEEEEEcCCCCcccc
Q psy9406 85 SHILAPATI-YG--KNILPRVAALLNVMQISEITKVCNPS---TFERPIYSGRIIATVQSTDIIKVITVRATNFISAK 156 (312)
Q Consensus 85 ~~IL~~aT~-~G--rdLaprlAarL~~~lvadv~~l~~~~---~~~R~~ygG~~~a~i~~~~~p~v~Tvr~g~f~~~~ 156 (312)
|+||+|..+ .| ..++|++|.+||+|+++.|++++.++ .++|..-+|.. ++++ ..|+++|+.++..+|.-
T Consensus 111 DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~~~~~~~~~~v~r~~e~g~e--~v~~-~lPavvtv~~~~n~PR~ 185 (254)
T PRK12342 111 DLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSKIQRQGNKLIVERTLEDDVE--VLEL-SLPAVLCVTSDINVPRI 185 (254)
T ss_pred CEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEEEEEeCCEEEEEEEcCCeEE--EEEE-cCCEEEEEeCCCCCCCC
Confidence 999999844 44 69999999999999999999987543 57888888864 4433 46899999998877653
No 12
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=99.46 E-value=5.6e-12 Score=115.60 Aligned_cols=140 Identities=20% Similarity=0.211 Sum_probs=116.7
Q ss_pred ccChHHHHHHHHHHhc----C-CcEEEEEEcCCc-h--HHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHHHh--
Q psy9406 13 YLKTSTLNTITAATLC----S-DEIHILIIGYNI-E--KVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVIAS-- 82 (312)
Q Consensus 13 ~l~~~slEll~~A~~L----g-~~V~av~~G~~~-~--~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l~~-- 82 (312)
.++|.+...+++|.+| + ++|+++.+|+.. + ...+++.+ +|+|+.|++.++.|...++...+.+|++.++
T Consensus 33 ~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a~~~~~lr~aLA-mGaD~avli~d~~~~g~D~~~tA~~La~ai~~~ 111 (256)
T PRK03359 33 KISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLS-RGPDELIVVIDDQFEQALPQQTASALAAAAQKA 111 (256)
T ss_pred ccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcchhhHHHHHHHHH-cCCCEEEEEecCcccCcCHHHHHHHHHHHHHHh
Confidence 5899999999999998 2 599999999865 2 45677776 8999999999999999999999999999977
Q ss_pred CCcEEEEcCCC-Cc--ccHHHHHHHHcCCceeeeEEEee-CC-C--eEEEEccCceEEEEEEECCCeEEEEEcCCCCccc
Q psy9406 83 NYSHILAPATI-YG--KNILPRVAALLNVMQISEITKVC-NP-S--TFERPIYSGRIIATVQSTDIIKVITVRATNFISA 155 (312)
Q Consensus 83 ~~~~IL~~aT~-~G--rdLaprlAarL~~~lvadv~~l~-~~-~--~~~R~~ygG~~~a~i~~~~~p~v~Tvr~g~f~~~ 155 (312)
+||+||+|..+ .| ..++|++|.+||+|+++.|++++ .+ + .++|...+|....++ ..|+++|+.++..+|.
T Consensus 112 ~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~l~~~~~~~v~v~r~~e~g~e~ve~---~lPavvtV~~~~n~PR 188 (256)
T PRK03359 112 GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSKIISLTDDTLTVERELEDEVETLSI---PLPAVIAVSTDINSPQ 188 (256)
T ss_pred CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEEEEEecCCEEEEEEEcCCeEEEEEE---cCCEEEEEeCCCCCCC
Confidence 58999999844 33 69999999999999999999984 23 3 579999998643333 4689999999988775
Q ss_pred c
Q psy9406 156 K 156 (312)
Q Consensus 156 ~ 156 (312)
-
T Consensus 189 ~ 189 (256)
T PRK03359 189 I 189 (256)
T ss_pred C
Confidence 3
No 13
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=99.42 E-value=1.1e-11 Score=113.44 Aligned_cols=141 Identities=19% Similarity=0.207 Sum_probs=119.7
Q ss_pred CccChHHHHHHHHHHhcC-----CcEEEEEEcCC-chHHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHHHh--C
Q psy9406 12 SYLKTSTLNTITAATLCS-----DEIHILIIGYN-IEKVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVIAS--N 83 (312)
Q Consensus 12 g~l~~~slEll~~A~~Lg-----~~V~av~~G~~-~~~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l~~--~ 83 (312)
-.+++.++..++.|.+|. ++|+++.+|+. .++.++++.+ +|+|+.|++.++.|.+.++...+.+|++.++ +
T Consensus 33 ~~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~a~~~lr~aLA-mGaDraili~d~~~~~~d~~~ta~~Laa~~~~~~ 111 (260)
T COG2086 33 LSINPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQAEEALREALA-MGADRAILITDRAFAGADPLATAKALAAAVKKIG 111 (260)
T ss_pred cccChhhHHHHHHHHHhhccCCCceEEEEEecchhhHHHHHHHHh-cCCCeEEEEecccccCccHHHHHHHHHHHHHhcC
Confidence 467899999999999993 57999999965 4677778776 8999999999999999999999999999987 5
Q ss_pred CcEEEEcCCC-Cc--ccHHHHHHHHcCCceeeeEEEeeC-CC---eEEEEccCceEEEEEEECCCeEEEEEcCCCCcccc
Q psy9406 84 YSHILAPATI-YG--KNILPRVAALLNVMQISEITKVCN-PS---TFERPIYSGRIIATVQSTDIIKVITVRATNFISAK 156 (312)
Q Consensus 84 ~~~IL~~aT~-~G--rdLaprlAarL~~~lvadv~~l~~-~~---~~~R~~ygG~~~a~i~~~~~p~v~Tvr~g~f~~~~ 156 (312)
+++||+|.-+ .| .++++++|+.||+|+++.+.+++. ++ +++|-.-+|.-..++ ..|+++|+..+.++|.-
T Consensus 112 ~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~~i~~~dg~~v~v~R~le~g~e~~e~---~LPaVvtv~~~~n~PR~ 188 (260)
T COG2086 112 PDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVSKIEIVDGGKVTVERELEGGLETVEA---PLPAVVTVDLRINEPRY 188 (260)
T ss_pred CCEEEEecccccCCccchHHHHHHHhCCceeeeEEEEEEcCCCeEEEEEEcCCceEEEEc---cCCEEEEeccccCCCCC
Confidence 7899999844 33 699999999999999999999984 44 579999998755444 46999999999888753
No 14
>KOG3180|consensus
Probab=98.53 E-value=2.5e-06 Score=74.30 Aligned_cols=131 Identities=17% Similarity=0.118 Sum_probs=105.3
Q ss_pred CccChHHHHHHHHHHhc-----CCcEEEEEEcCCc-hHHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHHHh--C
Q psy9406 12 SYLKTSTLNTITAATLC-----SDEIHILIIGYNI-EKVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVIAS--N 83 (312)
Q Consensus 12 g~l~~~slEll~~A~~L-----g~~V~av~~G~~~-~~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l~~--~ 83 (312)
-.++|+.-=.++.|-+| ..++.++.+|+.. .+..+.+.+ .|+|+-++++.+.-+...|...+.++.++++ +
T Consensus 36 ~SmNPF~eIAvEEAvrlKEk~l~eeviavs~G~aqs~~ilRt~LA-~Gadr~~hv~~~~~~~lepl~vAKiLk~~vekek 114 (254)
T KOG3180|consen 36 HSMNPFCEIAVEEAVRLKEKKLAEEVIAVSIGPAQSQEILRTALA-KGADRGVHVEVVGAEELEPLHVAKILKKLVEKEK 114 (254)
T ss_pred cccCchHHHHHHHHHhHhhhhhhheEEEEecCccchHHHHHHHHh-ccCCceeEEecCchhhccchHHHHHHHHHHHhhc
Confidence 46778877778888777 3689999999864 777888886 8999999999765677788899999999976 6
Q ss_pred CcEEEEcCCCC---cccHHHHHHHHcCCceeeeEEEeeCCC----eEEEEccCceEEEEEEECCCeEEEE
Q psy9406 84 YSHILAPATIY---GKNILPRVAALLNVMQISEITKVCNPS----TFERPIYSGRIIATVQSTDIIKVIT 146 (312)
Q Consensus 84 ~~~IL~~aT~~---GrdLaprlAarL~~~lvadv~~l~~~~----~~~R~~ygG~~~a~i~~~~~p~v~T 146 (312)
+++||+|-... ..+-++.+|+.|+||..+.|..++..+ .++|.+-||--. +.. ..|.++|
T Consensus 115 ~~lVllGKQAIDDD~nqTgqmlA~lL~WPQ~t~askV~~~~~~~~~VtREIDgGlet--l~~-~lPaVit 181 (254)
T KOG3180|consen 115 SDLVLLGKQAIDDDCNQTGQMLAALLGWPQATFASKVELEGDKRVKVTREIDGGLET--LKV-KLPAVIT 181 (254)
T ss_pred CCEEEEcccccccchhhhHHHHHHHhCCcccccceeEEEcCCCcEEEEEEecCChhh--eee-cCceEEE
Confidence 89999998664 478999999999999999999987542 689999999643 222 3466665
No 15
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=97.37 E-value=0.00065 Score=69.46 Aligned_cols=117 Identities=21% Similarity=0.277 Sum_probs=85.5
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCCC--eEeccCCcee---------CCceEEEEe
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISNN--LQIGQTGKIV---------APQLYIAIG 260 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~~--~qIG~sG~~v---------~P~lYia~G 260 (312)
|.+|+ .++-+|.|+...+..+.+.+||+++|+-|-+|-.. .|.+|.+ +.+|..|..- ..+|.|++|
T Consensus 203 L~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~g--kg~~p~~hp~~~G~~G~~~~~~~~~~l~~aDlvl~vG 280 (574)
T PRK07979 203 LVAAKKPVVYVGGGAINAACHQQLKELVEKLNLPVVSSLMG--LGAFPATHRQSLGMLGMHGTYEANMTMHNADVIFAVG 280 (574)
T ss_pred HHcCCCCEEEECCCccccchHHHHHHHHHHhCCCEEEcccc--CCCCCCCCcccccCCcCCCCHHHHHHHHhCCEEEEeC
Confidence 45564 67777888877777899999999999999887443 5777655 5778766422 359999999
Q ss_pred eccchhhhccc---CCCcEEEEEcCCCCCCccc-ccceEEeecHhHHHHHHHhhh
Q psy9406 261 ISGAIQHLSGM---KDSKIIVAINQDEDAPIFD-ISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 261 ISGa~qH~~G~---~~s~~IvAIN~D~~ApIf~-~aDygiVgD~~~vlp~l~~~l 311 (312)
.+=..+.+.+. .....+|-||.||.-.-.. ..|++|++|+.++|.+|+++|
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l 335 (574)
T PRK07979 281 VRFDDRTTNNLAKYCPNATVLHIDIDPTSISKTVTADIPIVGDARQVLEQMLELL 335 (574)
T ss_pred CCCcccccCChhhcCCCCeEEEEECCHHHhCCcccCCeEEecCHHHHHHHHHHhh
Confidence 87544443322 2234688899998753222 479999999999999998865
No 16
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=97.25 E-value=0.0015 Score=53.95 Aligned_cols=109 Identities=25% Similarity=0.342 Sum_probs=80.1
Q ss_pred cEEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCC--CCeEeccCCce---------eCCceEEEEeeccch
Q psy9406 197 KIVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYIS--NNLQIGQTGKI---------VAPQLYIAIGISGAI 265 (312)
Q Consensus 197 ~vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~--~~~qIG~sG~~---------v~P~lYia~GISGa~ 265 (312)
+-++=.|+|+...+..+.+++||+++|+-+..|-.. .|-+| +...+|..|.. =..+|.|++|.+=..
T Consensus 13 rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~--kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~~~~ 90 (137)
T PF00205_consen 13 RPVILAGRGARRSGAAEELRELAEKLGIPVATTPMG--KGVIPEDHPLFLGYLGLFGSPAANEALEQADLVLAIGTRLSD 90 (137)
T ss_dssp SEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGG--TTSSTTTSTTEEEESCGGSCHHHHHHHHHSSEEEEESSSSST
T ss_pred CEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCcc--ccccCCCCchhcccCCccCCHHHHHHhcCCCEEEEECCCCcc
Confidence 456677888887788999999999999999777655 45555 56678877764 345799999976433
Q ss_pred hhhcc----cCCCcEEEEEcCCCCCCcccc-cceEEeecHhHHHHHH
Q psy9406 266 QHLSG----MKDSKIIVAINQDEDAPIFDI-SDYGLVGDLFEIIPKF 307 (312)
Q Consensus 266 qH~~G----~~~s~~IvAIN~D~~ApIf~~-aDygiVgD~~~vlp~l 307 (312)
..+.| ....+.+|-||.||..-=-.+ .|+.+++|+.++|.+|
T Consensus 91 ~~~~~~~~~~~~~~~~I~I~~d~~~~~~~~~~~~~i~~d~~~~l~~L 137 (137)
T PF00205_consen 91 FNTYGFSPAFNPDAKIIQIDPDPAEIGKNYPPDVAIVGDIKAFLRAL 137 (137)
T ss_dssp TTTTTTTGCSTTTSEEEEEESSGGGTTSSSEESEEEESHHHHHHHHH
T ss_pred ccccccccccCCCCEEEEEECCHHHhCCCCCCCEEEEECHHHHhhCC
Confidence 33433 222238999999996654444 8999999999999876
No 17
>PRK08322 acetolactate synthase; Reviewed
Probab=97.18 E-value=0.0014 Score=66.58 Aligned_cols=117 Identities=21% Similarity=0.230 Sum_probs=82.2
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCC--CCeEeccCCce--------e-CCceEEEEe
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYIS--NNLQIGQTGKI--------V-APQLYIAIG 260 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~--~~~qIG~sG~~--------v-~P~lYia~G 260 (312)
|.+|+ -+|-+|+|+...+..+.+.+||+++|+-|-.|--. .|.+| |...+|..|.. + .++|.|++|
T Consensus 193 l~~A~rPviv~G~g~~~~~a~~~l~~lae~~~~pv~tt~~g--kg~~~~~hp~~~G~~G~~~~~~~~~~l~~aDlil~lG 270 (547)
T PRK08322 193 IQAAKNPLILIGAGANRKTASKALTEFVDKTGIPFFTTQMG--KGVIPETHPLSLGTAGLSQGDYVHCAIEHADLIINVG 270 (547)
T ss_pred HHhCCCcEEEECCCcchhcHHHHHHHHHHHhCCCEEEcccc--CCcCCCCCchhccCCCCCCCHHHHHHHHhCCEEEEEC
Confidence 45554 56667788776677899999999999988776433 46666 45567765522 1 579999999
Q ss_pred eccchhhhccc--CCCcEEEEEcCCCCCCc-ccccceEEeecHhHHHHHHHhhh
Q psy9406 261 ISGAIQHLSGM--KDSKIIVAINQDEDAPI-FDISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 261 ISGa~qH~~G~--~~s~~IvAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l 311 (312)
-+=.-..+.+. +....+|-||.||+..= ...+|+.+++|+.++|++|++++
T Consensus 271 ~~l~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 324 (547)
T PRK08322 271 HDVIEKPPFFMNPNGDKKVIHINFLPAEVDPVYFPQVEVVGDIANSLWQLKERL 324 (547)
T ss_pred CCCccccccccCCCCCCeEEEEeCCHHHcCCCcCCCeEEecCHHHHHHHHHHhc
Confidence 65332222222 23346889999997632 23579999999999999998876
No 18
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=97.15 E-value=0.0014 Score=67.59 Aligned_cols=117 Identities=20% Similarity=0.240 Sum_probs=82.6
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCCC--eEeccCCc--------ee-CCceEEEEe
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISNN--LQIGQTGK--------IV-APQLYIAIG 260 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~~--~qIG~sG~--------~v-~P~lYia~G 260 (312)
|.+|+ .++-.|.|+...+..+.+.+||+.||+-|-.|=- ..|.+|.+ ..+|..|. .+ .++|.|++|
T Consensus 228 L~~AkrPlIl~G~g~~~~~a~~~l~~lae~l~~PV~tt~~--~kg~~p~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG 305 (612)
T PRK07789 228 IAAARRPVLYVGGGVIRAEASAELRELAELTGIPVVTTLM--ARGAFPDSHPQHLGMPGMHGTVAAVAALQRSDLLIALG 305 (612)
T ss_pred HHhCCCCEEEECCCccccCHHHHHHHHHHHHCCCEEEccc--ccccCCCCChhhccCCcccCcHHHHHHHHhCCEEEEEC
Confidence 45565 5677788887677889999999999998887643 36777744 36776553 23 489999999
Q ss_pred eccchhhhcc---cCCCcEEEEEcCCCCCCc-ccccceEEeecHhHHHHHHHhhh
Q psy9406 261 ISGAIQHLSG---MKDSKIIVAINQDEDAPI-FDISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 261 ISGa~qH~~G---~~~s~~IvAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l 311 (312)
-+=....+.+ +.....+|-||.|++..- ....|++|++|..++|++|+++|
T Consensus 306 ~~l~~~~t~~~~~~~~~~~~i~Id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l 360 (612)
T PRK07789 306 ARFDDRVTGKLDSFAPDAKVIHADIDPAEIGKNRHADVPIVGDVKEVIAELIAAL 360 (612)
T ss_pred CCCCccccCChhhcCCCCcEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhh
Confidence 7633322222 222335788999986321 23469999999999999999876
No 19
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=97.14 E-value=0.0014 Score=67.18 Aligned_cols=117 Identities=17% Similarity=0.234 Sum_probs=84.1
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCC--CeEeccCCc---------eeCCceEEEEe
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISN--NLQIGQTGK---------IVAPQLYIAIG 260 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~--~~qIG~sG~---------~v~P~lYia~G 260 (312)
|.+|+ .+|-+|.|+......+.+++||++||+-|-+|-.. .|.+|. ...+|..|. .-..+|.|++|
T Consensus 214 L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~PV~tt~~~--kg~~~~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG 291 (585)
T CHL00099 214 ILQSSQPLLYVGGGAIISDAHQEITELAELYKIPVTTTLMG--KGIFDEDHPLCLGMLGMHGTAYANFAVSECDLLIALG 291 (585)
T ss_pred HHcCCCcEEEECCCCchhchHHHHHHHHHHHCCCEEEcccc--CcCCCCCCCcccCCCCCCCCHHHHHHHHhCCEEEEEC
Confidence 45554 56667889876678899999999999988876544 577775 446787764 24679999999
Q ss_pred eccchhhhcc---cCCCcEEEEEcCCCCCCc-ccccceEEeecHhHHHHHHHhhh
Q psy9406 261 ISGAIQHLSG---MKDSKIIVAINQDEDAPI-FDISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 261 ISGa~qH~~G---~~~s~~IvAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l 311 (312)
-+=...++.+ ......+|-||.||+-.- ....|+++++|..++|++|++.|
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 346 (585)
T CHL00099 292 ARFDDRVTGKLDEFACNAQVIHIDIDPAEIGKNRIPQVAIVGDVKKVLQELLELL 346 (585)
T ss_pred CCCcccccCCHhHcCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHHh
Confidence 7633222222 233456888999986321 22468999999999999998865
No 20
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=97.11 E-value=0.0018 Score=66.33 Aligned_cols=117 Identities=18% Similarity=0.154 Sum_probs=82.5
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCCC--eEeccCCcee---------CCceEEEEe
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISNN--LQIGQTGKIV---------APQLYIAIG 260 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~~--~qIG~sG~~v---------~P~lYia~G 260 (312)
|.+|+ .++-+|+|+......+.+.+||+++|+-|-+|-- ..|.+|.+ ..+|..|..- ..+|.|++|
T Consensus 211 L~~A~rPvIl~G~g~~~~~a~~~l~~lae~~~~PV~tt~~--~kg~~p~~hp~~~G~~G~~~~~~~~~~l~~aDlil~vG 288 (570)
T PRK06725 211 ISKAKRPLLYIGGGVIHSGGSEELIEFARENRIPVVSTLM--GLGAYPPGDPLFLGMLGMHGTYAANMAVTECDLLLALG 288 (570)
T ss_pred HHcCCCcEEEECCCccccchHHHHHHHHHHhCCCEEECCc--cCcCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEeC
Confidence 45554 6777788887677889999999999999887643 35777654 3566655432 359999999
Q ss_pred eccchhhhcc---cCCCcEEEEEcCCCCCCc-ccccceEEeecHhHHHHHHHhhh
Q psy9406 261 ISGAIQHLSG---MKDSKIIVAINQDEDAPI-FDISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 261 ISGa~qH~~G---~~~s~~IvAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l 311 (312)
-+=..+.+.+ +.....+|-||.||...= ....|++|++|+.++|++|+++|
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l 343 (570)
T PRK06725 289 VRFDDRVTGKLELFSPHSKKVHIDIDPSEFHKNVAVEYPVVGDVKKALHMLLHMS 343 (570)
T ss_pred CCCCccccCcccccCCCCeEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHHHhc
Confidence 7633222222 222345888999988621 11369999999999999998876
No 21
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=97.10 E-value=0.0018 Score=65.68 Aligned_cols=117 Identities=21% Similarity=0.255 Sum_probs=82.0
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCCCe---EeccCCce--------e-CCceEEEE
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISNNL---QIGQTGKI--------V-APQLYIAI 259 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~~~---qIG~sG~~--------v-~P~lYia~ 259 (312)
|.+|+ -++-+|.|+...+..+.+++||+++|+-|-.| .-..|.+|.++ .+|..|.. + ..+|.|++
T Consensus 192 l~~A~rPvi~~G~g~~~~~a~~~l~~lae~~g~pv~tt--~~gkg~i~~~~~~~~~G~~G~~~~~~~~~~~~~aDlvl~l 269 (539)
T TIGR02418 192 IQNAKLPVLLLGLRASSPETTEAVRRLLKKTQLPVVET--FQGAGAVSRELEDHFFGRVGLFRNQPGDRLLKQADLVITI 269 (539)
T ss_pred HHcCCCCEEEECCCcCcccHHHHHHHHHHHhCCCEEEc--cccCcCCCCCCChhhcccCcCCCcHHHHHHHHhCCEEEEe
Confidence 45554 56666788877778899999999999998887 33467787543 67766631 2 56899999
Q ss_pred eeccchhhhccc--CCCcEEEEEcCCCCCCccc-ccceEEeecHhHHHHHHHhhh
Q psy9406 260 GISGAIQHLSGM--KDSKIIVAINQDEDAPIFD-ISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 260 GISGa~qH~~G~--~~s~~IvAIN~D~~ApIf~-~aDygiVgD~~~vlp~l~~~l 311 (312)
|-+=.--..... +....+|-||.|+...-.. ..|.+|++|+.++|++|++.+
T Consensus 270 G~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 324 (539)
T TIGR02418 270 GYDPIEYEPRNWNSENDATIVHIDVEPAQIDNNYQPDLELVGDIASTLDLLAERI 324 (539)
T ss_pred cCcccccCccccCcCCCCeEEEEeCChHHcCCccCCCeEEecCHHHHHHHHHHhh
Confidence 965221111111 1224677899999864322 369999999999999998865
No 22
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=97.09 E-value=0.0021 Score=65.99 Aligned_cols=117 Identities=17% Similarity=0.256 Sum_probs=84.2
Q ss_pred CCCC-cEEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCCC--eEeccCCcee----------CCceEEEE
Q psy9406 193 LTSA-KIVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISNN--LQIGQTGKIV----------APQLYIAI 259 (312)
Q Consensus 193 l~~A-~vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~~--~qIG~sG~~v----------~P~lYia~ 259 (312)
|.+| +-++-+|.|+...+..+.+.+||++||+-|-.|-. ..|++|++ ..+|..|-.- .-+|.|++
T Consensus 199 L~~AkrPvIl~G~g~~~~~a~~~l~~lae~~g~PV~tt~~--gkg~~p~~hpl~~G~~g~~~~~~~a~~~l~~aD~iL~l 276 (588)
T TIGR01504 199 LNAAERPLIVAGGGVINADAADLLQEFAELTGVPVIPTLM--GWGCIPDDHELMAGMVGLQTSHRYGNATLLESDFVFGI 276 (588)
T ss_pred HHhCCCcEEEECCCcchhhhHHHHHHHHHHhCCCeEEcCc--cCCCCCCCChhhCcCCCCCCCcHHHHHHHHhCCEEEEE
Confidence 3444 34555788888778889999999999999988844 37888865 4888776431 25999999
Q ss_pred eeccchhhhcc---cCCCcEEEEEcCCCCCCccc-ccceEEeecHhHHHHHHHhhh
Q psy9406 260 GISGAIQHLSG---MKDSKIIVAINQDEDAPIFD-ISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 260 GISGa~qH~~G---~~~s~~IvAIN~D~~ApIf~-~aDygiVgD~~~vlp~l~~~l 311 (312)
|.+=.-.++.+ ....+.+|-||.|+..-=.. ..|++|++|+..+|++|++.+
T Consensus 277 G~~l~~~~t~~~~~~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 332 (588)
T TIGR01504 277 GNRWANRHTGSVDVYTEGRKFVHVDIEPTQIGRVFAPDLGIVSDAKAALKLLVEVA 332 (588)
T ss_pred CCCCCccccCcccccCCCCeEEEeeCCHHHhcCcCCCCeEEEeCHHHHHHHHHHHh
Confidence 98733333333 22334577899998752211 379999999999999998865
No 23
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=97.04 E-value=0.003 Score=64.43 Aligned_cols=116 Identities=24% Similarity=0.298 Sum_probs=83.4
Q ss_pred CCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCC--CeEeccCCce---------eCCceEEEEee
Q psy9406 194 TSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISN--NLQIGQTGKI---------VAPQLYIAIGI 261 (312)
Q Consensus 194 ~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~--~~qIG~sG~~---------v~P~lYia~GI 261 (312)
.+|+ .++-+|.|.......+.+++||++||+-|-+|-- -.|.+|. ...+|..|.. =..++.|++|-
T Consensus 205 ~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~tt~~--~kg~~~~~hpl~~G~~g~~~~~~~~~~l~~aD~vl~lG~ 282 (561)
T PRK06048 205 MKAERPIIYAGGGVISSNASEELVELAETIPAPVTTTLM--GIGAIPTEHPLSLGMLGMHGTKYANYAIQESDLIIAVGA 282 (561)
T ss_pred HhCCCCEEEECCCcccccHHHHHHHHHHHhCCCEEEccc--cCccCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEECC
Confidence 4554 5666788887666788999999999999988743 4578874 4578877642 16899999997
Q ss_pred ccchhhhcc---cCCCcEEEEEcCCCCC-CcccccceEEeecHhHHHHHHHhhh
Q psy9406 262 SGAIQHLSG---MKDSKIIVAINQDEDA-PIFDISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 262 SGa~qH~~G---~~~s~~IvAIN~D~~A-pIf~~aDygiVgD~~~vlp~l~~~l 311 (312)
+=....+.+ +...+.+|-||.||.- --+...|..|++|+..+|++|++.+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 336 (561)
T PRK06048 283 RFDDRVTGKLASFAPNAKIIHIDIDPAEISKNVKVDVPIVGDAKQVLKSLIKYV 336 (561)
T ss_pred CCCccccCChhhcCCCCeEEEEECCHHHhCCCCCCCeEEEeCHHHHHHHHHHhc
Confidence 633222222 3334567889999853 1123469999999999999999876
No 24
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=97.03 E-value=0.0027 Score=64.97 Aligned_cols=117 Identities=18% Similarity=0.261 Sum_probs=81.6
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCC--CCeEeccCCce---------e-----CCce
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYIS--NNLQIGQTGKI---------V-----APQL 255 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~--~~~qIG~sG~~---------v-----~P~l 255 (312)
|.+|+ .++-+|.|+...+..+.+.+||++||+-|-+|-. -.|.+| |...+|..|-. . .++|
T Consensus 210 L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~~t~~--~kg~~p~~hp~~~G~~g~~~~~~~~~~~~~~~l~~aDl 287 (578)
T PRK06112 210 LAQAQRPVVVAGGGVHISGASAALAALQSLAGLPVATTNM--GKGAVDETHPLSLGVVGSLMGPRSPGRHLRDLVREADV 287 (578)
T ss_pred HHcCCCcEEEECCCccccchHHHHHHHHHHhCCCEEEccc--ccccCCCCCccccccccccCCCccchHHHHHHHHhCCE
Confidence 34454 4555677877677888999999999998887655 356676 34557765531 1 6899
Q ss_pred EEEEeeccchhhhccc---CCCcEEEEEcCCCCCCcccccceEEeecHhHHHHHHHhhh
Q psy9406 256 YIAIGISGAIQHLSGM---KDSKIIVAINQDEDAPIFDISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 256 Yia~GISGa~qH~~G~---~~s~~IvAIN~D~~ApIf~~aDygiVgD~~~vlp~l~~~l 311 (312)
.|++|-+=..+...+. ...+.+|-||.|+...-..+.++.|++|..++|++|+++|
T Consensus 288 vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l 346 (578)
T PRK06112 288 VLLVGTRTNQNGTDSWSLYPEQAQYIHIDVDGEEVGRNYEALRLVGDARLTLAALTDAL 346 (578)
T ss_pred EEEECCCCCccccccccccCCCCeEEEEECChHHhCccccceEEEeCHHHHHHHHHHhh
Confidence 9999965333333332 2235678899998654333448999999999999998865
No 25
>PRK08617 acetolactate synthase; Reviewed
Probab=96.96 E-value=0.0025 Score=64.85 Aligned_cols=117 Identities=21% Similarity=0.234 Sum_probs=81.4
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCCCe---EeccCCc---------eeCCceEEEE
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISNNL---QIGQTGK---------IVAPQLYIAI 259 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~~~---qIG~sG~---------~v~P~lYia~ 259 (312)
|.+|+ .+|-+|+|+...+..+.+.+||+++|+-|-.| .--.|.+|+++ .+|..|. .-.++|.|++
T Consensus 198 L~~AkrPvi~~G~g~~~~~a~~~l~~lae~~~~pV~tt--~~gkg~~~~~hp~~~~G~~g~~~~~~~~~~~~~aDlvl~l 275 (552)
T PRK08617 198 IKNAKLPVLLLGMRASSPEVTAAIRRLLERTNLPVVET--FQAAGVISRELEDHFFGRVGLFRNQPGDELLKKADLVITI 275 (552)
T ss_pred HHhCCCCEEEECCCcchhhHHHHHHHHHHHhCCCEEec--cccCccCCCCCchhhccCCcCCCcHHHHHHHHhCCEEEEe
Confidence 45554 56667888776677899999999999988876 33468888654 5777663 2368999999
Q ss_pred eeccchhhhccc--CCCcEEEEEcCCCCCCc-ccccceEEeecHhHHHHHHHhhh
Q psy9406 260 GISGAIQHLSGM--KDSKIIVAINQDEDAPI-FDISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 260 GISGa~qH~~G~--~~s~~IvAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l 311 (312)
|.+=........ ...+.+|-||.||+..= ....|..|++|+..+|+.|++.+
T Consensus 276 G~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 330 (552)
T PRK08617 276 GYDPIEYEPRNWNSEGDATIIHIDVLPAEIDNYYQPERELIGDIAATLDLLAEKL 330 (552)
T ss_pred cCccccccccccccCCCCcEEEEeCChHHhCCccCCCeEEeCCHHHHHHHHHHhh
Confidence 964321111111 12345777999987522 22469999999999999998765
No 26
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=96.89 E-value=0.0028 Score=64.66 Aligned_cols=117 Identities=21% Similarity=0.252 Sum_probs=82.2
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCC--CeEeccCCc---------eeCCceEEEEe
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISN--NLQIGQTGK---------IVAPQLYIAIG 260 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~--~~qIG~sG~---------~v~P~lYia~G 260 (312)
|.+|+ .++-+|+|+......+.+++||+.||+-|-.|-.. .|.+|. ...+|..|. .-..+|.|++|
T Consensus 200 L~~A~rPviv~G~g~~~~~a~~~l~~lae~~~~pV~tt~~~--kg~~~~~hpl~~G~~g~~~~~~~~~~l~~aD~vl~lG 277 (563)
T PRK08527 200 IKEAKKPLFYLGGGAILSNASEEIRELVKKTGIPAVETLMA--RGVLRSDDPLLLGMLGMHGSYAANMAMSECDLLISLG 277 (563)
T ss_pred HHcCCCCEEEECCCccccchHHHHHHHHHHHCCCEEEcccc--CCCCCCCChhhcCCCcccCCHHHHHHHHhCCEEEEeC
Confidence 45664 66677888877677899999999999988655433 466774 456887763 22569999999
Q ss_pred eccchhhhccc---CCCcEEEEEcCCCCCC-cccccceEEeecHhHHHHHHHhhh
Q psy9406 261 ISGAIQHLSGM---KDSKIIVAINQDEDAP-IFDISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 261 ISGa~qH~~G~---~~s~~IvAIN~D~~Ap-If~~aDygiVgD~~~vlp~l~~~l 311 (312)
-+=....+.+. .....+|-||.||..- -...+|+.|++|+.++|++|++++
T Consensus 278 ~~l~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 332 (563)
T PRK08527 278 ARFDDRVTGKLSEFAKHAKIIHVDIDPSSISKIVNADYPIVGDLKNVLKEMLEEL 332 (563)
T ss_pred CCCCccccCChhhcCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhh
Confidence 75433322221 2234588899998631 122369999999999999998876
No 27
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=96.84 E-value=0.0047 Score=63.33 Aligned_cols=117 Identities=20% Similarity=0.258 Sum_probs=82.3
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCCC--eEeccCCc---------eeCCceEEEEe
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISNN--LQIGQTGK---------IVAPQLYIAIG 260 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~~--~qIG~sG~---------~v~P~lYia~G 260 (312)
|.+|+ -++-+|.|....+..+.+.+||+++|+-|-+|- -..|.+|.+ ..+|..|. .=.++|.|++|
T Consensus 200 L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~--~~kg~~p~~hp~~~G~~G~~~~~~~~~~l~~aD~vl~lG 277 (586)
T PRK06276 200 IAEAERPVILAGGGVIISGASEELIELSELVKIPVCTTL--MGKGAFPEDHPLALGMVGMHGTKAANYSVTESDVLIAIG 277 (586)
T ss_pred HHcCCCeEEEECCCcCcccHHHHHHHHHHHHCCCEEEcC--CCCccCCCCCcccccCCCCCCCHHHHHHHHcCCEEEEEC
Confidence 45555 666778887655668899999999999998873 346788744 45776653 33579999999
Q ss_pred eccchhhhcc---cCCCcEEEEEcCCCCCCc-ccccceEEeecHhHHHHHHHhhh
Q psy9406 261 ISGAIQHLSG---MKDSKIIVAINQDEDAPI-FDISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 261 ISGa~qH~~G---~~~s~~IvAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l 311 (312)
-+=.-.++.+ +.....+|-||.||.-.= ....|..|++|...+|++|++.|
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l 332 (586)
T PRK06276 278 CRFSDRTTGDISSFAPNAKIIHIDIDPAEIGKNVRVDVPIVGDAKNVLRDLLAEL 332 (586)
T ss_pred CCCCccccCCccccCCCCeEEEEECCHHHhCCcCCCceEEecCHHHHHHHHHHhh
Confidence 7644333333 233445778999985210 11369999999999999998865
No 28
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=96.80 E-value=0.0039 Score=63.74 Aligned_cols=117 Identities=21% Similarity=0.241 Sum_probs=83.6
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCCCe--EeccCCce--------e-CCceEEEEe
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISNNL--QIGQTGKI--------V-APQLYIAIG 260 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~~~--qIG~sG~~--------v-~P~lYia~G 260 (312)
|.+|+ -++-.|.|+...+..+.+.+||+++|+-|-.|- --.|.+|.++ .+|..|.. + .++|.|++|
T Consensus 203 l~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~--~gkg~~~~~hp~~~G~~G~~~~~~~~~~l~~aDlvl~lG 280 (574)
T PRK06882 203 LLVAKKPVLFVGGGVITAECSEQLTQFAQKLNLPVTSSL--MGLGAYPSTDKQFLGMLGMHGTYEANNAMHESDLILGIG 280 (574)
T ss_pred HHhCCCCEEEECCCccccchHHHHHHHHHHhCCCEEEcC--ccCcCCCCCChhhcCCCcccccHHHHHHHHhCCEEEEEC
Confidence 34554 566778888766778899999999999998883 2478888654 47766632 2 679999999
Q ss_pred eccchhhhccc---CCCcEEEEEcCCCCCCc-ccccceEEeecHhHHHHHHHhhh
Q psy9406 261 ISGAIQHLSGM---KDSKIIVAINQDEDAPI-FDISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 261 ISGa~qH~~G~---~~s~~IvAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l 311 (312)
-+=....+.+. .....+|-||.||.-.= ....|..|++|+.++|+.|.+.|
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 335 (574)
T PRK06882 281 VRFDDRTTNNLAKYCPNAKVIHIDIDPTSISKNVPAYIPIVGSAKNVLEEFLSLL 335 (574)
T ss_pred CCCCccccCchhhcCCCCeEEEEECCHHHhcCccCCceEEecCHHHHHHHHHHHh
Confidence 76444443222 22335778999986421 11369999999999999998865
No 29
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=96.78 E-value=0.004 Score=63.72 Aligned_cols=117 Identities=22% Similarity=0.212 Sum_probs=82.9
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCCC--eEeccCCce---------eCCceEEEEe
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISNN--LQIGQTGKI---------VAPQLYIAIG 260 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~~--~qIG~sG~~---------v~P~lYia~G 260 (312)
|.+|+ -++-+|+|+......+.+.+||+++|+-|-.|-.. .|.+|++ ..+|..|.. =.-+|.|++|
T Consensus 203 L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~g--kg~~~~~hp~~~G~~G~~~~~~~~~~~~~aD~vl~vG 280 (572)
T PRK08979 203 LLAAKKPVLYVGGGAIISGADKQILQLAEKLNLPVVSTLMG--LGAFPGTHKNSLGMLGMHGRYEANMAMHNADLIFGIG 280 (572)
T ss_pred HHhCCCCEEEECCCccccChHHHHHHHHHHhCCCEEEcccc--cccCCCCCcccccCCccCCCHHHHHHHHhCCEEEEEc
Confidence 34554 56667788876667889999999999999887543 6888765 468876632 1348999999
Q ss_pred eccchhhhcc---cCCCcEEEEEcCCCCCCccc-ccceEEeecHhHHHHHHHhhh
Q psy9406 261 ISGAIQHLSG---MKDSKIIVAINQDEDAPIFD-ISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 261 ISGa~qH~~G---~~~s~~IvAIN~D~~ApIf~-~aDygiVgD~~~vlp~l~~~l 311 (312)
-+=....+.+ ......+|-||.|++-.=.. ..|..|++|+.++|++|++.|
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l 335 (572)
T PRK08979 281 VRFDDRTTNNLEKYCPNATILHIDIDPSSISKTVRVDIPIVGSADKVLDSMLALL 335 (572)
T ss_pred CCCCccccCchhhcCCCCeEEEEECCHHHhCCccCCceEEecCHHHHHHHHHHhh
Confidence 7633332222 22234688899998743221 369999999999999998865
No 30
>PRK11269 glyoxylate carboligase; Provisional
Probab=96.74 E-value=0.0048 Score=63.36 Aligned_cols=117 Identities=18% Similarity=0.258 Sum_probs=82.4
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCC--CeEeccCCc----------eeCCceEEEE
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISN--NLQIGQTGK----------IVAPQLYIAI 259 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~--~~qIG~sG~----------~v~P~lYia~ 259 (312)
|.+|+ -++-+|.|+...+..+.+.+||+.+|+-|-.|- -..|.+|. ....|..|. .-.++|.|++
T Consensus 200 L~~AkrPvil~G~g~~~~~a~~~l~~lae~~g~PV~tt~--~gkg~~p~~hpl~~G~~g~~~~~~~~~~~~~~aDlvl~l 277 (591)
T PRK11269 200 LNAAERPLIVAGGGVINADASDLLVEFAELTGVPVIPTL--MGWGAIPDDHPLMAGMVGLQTSHRYGNATLLASDFVLGI 277 (591)
T ss_pred HHhCCCcEEEECCCCcccCHHHHHHHHHHHhCCCeEecc--cccCcCCCCChhhccCCcCCCCcHHHHHHHHhCCEEEEe
Confidence 45565 566667887766678899999999999998874 34577774 456776653 2367999999
Q ss_pred eeccchhhhcc---cCCCcEEEEEcCCCCCC-cccccceEEeecHhHHHHHHHhhh
Q psy9406 260 GISGAIQHLSG---MKDSKIIVAINQDEDAP-IFDISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 260 GISGa~qH~~G---~~~s~~IvAIN~D~~Ap-If~~aDygiVgD~~~vlp~l~~~l 311 (312)
|-+=....+.+ ......+|-||.|+..- -....|++|++|..++|..|.+++
T Consensus 278 G~~~~~~~~~~~~~~~~~~~~i~Vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 333 (591)
T PRK11269 278 GNRWANRHTGSVEVYTKGRKFVHVDIEPTQIGRVFGPDLGIVSDAKAALELLVEVA 333 (591)
T ss_pred CCCCCccccCchhhcCCCCeEEEeeCCHHHhCCCCCCCeEEEeCHHHHHHHHHHHh
Confidence 97633222222 23344577899998752 112369999999999999998865
No 31
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=96.72 E-value=0.0059 Score=62.40 Aligned_cols=117 Identities=17% Similarity=0.177 Sum_probs=80.9
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCCCe--EeccCCc---------eeCCceEEEEe
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISNNL--QIGQTGK---------IVAPQLYIAIG 260 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~~~--qIG~sG~---------~v~P~lYia~G 260 (312)
|.+|+ -+|-.|.|+......+.+.+||+++|+-|-.|-.. .|.+|.++ -+|.+|. .=.++|.|++|
T Consensus 212 L~~A~rPvIl~G~g~~~~~a~~~l~~lae~~~~pv~tt~~~--kg~i~~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG 289 (571)
T PRK07710 212 VSVAKKPVILAGAGVLHAKASKELTSYAEQQEIPVVHTLLG--LGGFPADHPLFLGMAGMHGTYTANMALYECDLLINIG 289 (571)
T ss_pred HHhCCCCEEEECCCcCccchHHHHHHHHHHhCCCEEEcCcc--CccCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEeC
Confidence 34443 56666777765566889999999999998887643 57777654 6787763 22679999999
Q ss_pred eccchhhhcc---cCCCcEEEEEcCCCCCC-cccccceEEeecHhHHHHHHHhhh
Q psy9406 261 ISGAIQHLSG---MKDSKIIVAINQDEDAP-IFDISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 261 ISGa~qH~~G---~~~s~~IvAIN~D~~Ap-If~~aDygiVgD~~~vlp~l~~~l 311 (312)
-+=....+.+ +.....+|=||.||... -....|+.+++|+.++|.+|++.+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~i~id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~~ 344 (571)
T PRK07710 290 ARFDDRVTGNLAYFAKEATVAHIDIDPAEIGKNVPTEIPIVADAKQALQVLLQQE 344 (571)
T ss_pred CCCCccccCchhhcCCCCeEEEEECCHHHhcCcCCCCeEEecCHHHHHHHHHHhh
Confidence 7543333222 22233466799998631 112369999999999999998765
No 32
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=96.70 E-value=0.0069 Score=62.17 Aligned_cols=117 Identities=24% Similarity=0.270 Sum_probs=81.6
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCCCe--EeccCCce--------e-CCceEEEEe
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISNNL--QIGQTGKI--------V-APQLYIAIG 260 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~~~--qIG~sG~~--------v-~P~lYia~G 260 (312)
|.+|+ -++-+|.|+...+..+.+++||+++|+-|-.|-. ..|.+|+++ .+|..|.. + ..+|.|++|
T Consensus 218 L~~AkrPvil~G~g~~~~~a~~~l~~lae~~g~pv~tt~~--gkg~~~~~hpl~~G~~G~~~~~~a~~~~~~aDlvl~lG 295 (587)
T PRK06965 218 LLSAKRPYIYTGGGVILANASRELRQLADLLGYPVTNTLM--GLGAYPASDKKFLGMLGMHGTYEANMAMQHCDVLIAIG 295 (587)
T ss_pred HHhcCCCEEEECCCccccchHHHHHHHHHHhCCCEEEccc--cCCCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEEC
Confidence 34554 4556788888777889999999999999987755 468888765 67776642 2 479999999
Q ss_pred ec--cchhh-hccc-CCCcEEEEEcCCCCC-CcccccceEEeecHhHHHHHHHhhh
Q psy9406 261 IS--GAIQH-LSGM-KDSKIIVAINQDEDA-PIFDISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 261 IS--Ga~qH-~~G~-~~s~~IvAIN~D~~A-pIf~~aDygiVgD~~~vlp~l~~~l 311 (312)
-+ ..... ...+ +....+|-||.|+.- --....|+.+++|+.++|++|++++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 351 (587)
T PRK06965 296 ARFDDRVIGNPAHFASRPRKIIHIDIDPSSISKRVKVDIPIVGDVKEVLKELIEQL 351 (587)
T ss_pred CCCcccccCChhhcCCCCceEEEEeCCHHHhCCcCCCCeEEecCHHHHHHHHHHhh
Confidence 53 21100 0011 223567889999853 1112369999999999999999865
No 33
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=96.66 E-value=0.0062 Score=62.31 Aligned_cols=117 Identities=21% Similarity=0.227 Sum_probs=82.6
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCCC--eEeccCCce---------eCCceEEEEe
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISNN--LQIGQTGKI---------VAPQLYIAIG 260 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~~--~qIG~sG~~---------v~P~lYia~G 260 (312)
|.+|+ .++-+|.|+...+..+.+.+||++||+-|-.|-. ..|.+|++ ..+|..|.. -..+|.|++|
T Consensus 203 L~~A~rPvil~G~g~~~~~a~~~l~~lae~~g~pv~tt~~--~kg~~~~~hp~~~G~~G~~~~~~~~~~l~~aD~il~vG 280 (574)
T PRK06466 203 LLAAKRPVIYSGGGVVLGNASALLTELAHLLNLPVTNTLM--GLGGFPGTDRQFLGMLGMHGTYEANMAMHHADVILAVG 280 (574)
T ss_pred HHhCCCCEEEECCCccccChHHHHHHHHHHhCCCEEEcCc--cCCCCCCCChhhcCCCccccCHHHHHHHHhCCEEEEEC
Confidence 44554 5666677776566688999999999999887766 36788765 478877732 2569999999
Q ss_pred eccchhhhccc---CCCcEEEEEcCCCCCCc-ccccceEEeecHhHHHHHHHhhh
Q psy9406 261 ISGAIQHLSGM---KDSKIIVAINQDEDAPI-FDISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 261 ISGa~qH~~G~---~~s~~IvAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l 311 (312)
-+=....+.+. .....+|-||.||.--= ....|..+++|+.++|+.|++.|
T Consensus 281 ~~~~~~~~~~~~~~~~~~~vi~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l 335 (574)
T PRK06466 281 ARFDDRVTNGPAKFCPNAKIIHIDIDPASISKTIKADIPIVGPVESVLTEMLAIL 335 (574)
T ss_pred CCCCccccCchhhcCCCCeEEEEECCHHHhCCccCCCeEEecCHHHHHHHHHHHh
Confidence 76333322222 23346888999987421 12469999999999999998765
No 34
>PRK06154 hypothetical protein; Provisional
Probab=96.65 E-value=0.0066 Score=62.07 Aligned_cols=117 Identities=24% Similarity=0.312 Sum_probs=82.1
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCC--CeEeccCCc---------eeCCceEEEEe
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISN--NLQIGQTGK---------IVAPQLYIAIG 260 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~--~~qIG~sG~---------~v~P~lYia~G 260 (312)
|.+|+ -++-.|.|+...+..+.+.+||+.||+-|-.|--. .|.+|. ...+|..|. .-..+|.|++|
T Consensus 211 L~~A~rPvil~G~g~~~~~a~~~l~~lae~l~~PV~tt~~g--kg~~~~~hpl~~G~~g~~~~~~~~~~~~~aDlvL~lG 288 (565)
T PRK06154 211 LLAAERPVIYAGQGVLYAQATPELKELAELLEIPVMTTLNG--KSAFPEDHPLALGSGGRARPATVAHFLREADVLFGIG 288 (565)
T ss_pred HHhCCCCEEEECCCccccChHHHHHHHHHHhCCCEEECCCc--ccCCCCCCccccCCCCCCCcHHHHHHHHhCCEEEEEC
Confidence 55564 55567888877788899999999999988776332 577764 345776653 23679999999
Q ss_pred eccchhhhcc--cCCCcEEEEEcCCCCCCcc-cccceEEeecHhHHHHHHHhhhC
Q psy9406 261 ISGAIQHLSG--MKDSKIIVAINQDEDAPIF-DISDYGLVGDLFEIIPKFIKYLN 312 (312)
Q Consensus 261 ISGa~qH~~G--~~~s~~IvAIN~D~~ApIf-~~aDygiVgD~~~vlp~l~~~l~ 312 (312)
-+=.. ...| +...+.||-||.||+..=- ...|++|++|..++|++|+++|+
T Consensus 289 ~~l~~-~~~~~~~~~~~~vI~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~ 342 (565)
T PRK06154 289 CSLTR-SYYGLPMPEGKTIIHSTLDDADLNKDYPIDHGLVGDAALVLKQMIEELR 342 (565)
T ss_pred CCCcc-cccCccCCCCCeEEEEECCHHHhccccCCCeeEEcCHHHHHHHHHHHhh
Confidence 55111 1112 3445678889999974211 13599999999999999998763
No 35
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=96.63 E-value=0.0063 Score=62.10 Aligned_cols=117 Identities=17% Similarity=0.231 Sum_probs=81.6
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCCC--eEeccCCc---------eeCCceEEEEe
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISNN--LQIGQTGK---------IVAPQLYIAIG 260 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~~--~qIG~sG~---------~v~P~lYia~G 260 (312)
|.+|+ -++-+|+|+......+.+.+||+.||+-+-+|-.. .|.+|++ ..+|..|. .-.++|-|++|
T Consensus 208 L~~AkrPvIl~G~g~~~~~a~~~l~~lae~~~~pv~tt~~~--kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~lG 285 (564)
T PRK08155 208 INAAKRPVLYLGGGVINSGAPARARELAEKAQLPTTMTLMA--LGMLPKAHPLSLGMLGMHGARSTNYILQEADLLIVLG 285 (564)
T ss_pred HHhCCCCEEEECCCccccchHHHHHHHHHHHCCCEEEcccc--cccCCCCChhhccCCCCCCCHHHHHHHHhCCEEEEEC
Confidence 44565 56666778776667889999999999999887655 5777654 36777654 23489999999
Q ss_pred eccchhhhcc---cCCCcEEEEEcCCCCCCc-ccccceEEeecHhHHHHHHHhhh
Q psy9406 261 ISGAIQHLSG---MKDSKIIVAINQDEDAPI-FDISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 261 ISGa~qH~~G---~~~s~~IvAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l 311 (312)
-+=...++.+ ......+|-||.|++--- +..+|+.|++|+.++|.+|++++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 340 (564)
T PRK08155 286 ARFDDRAIGKTEQFCPNAKIIHVDIDRAELGKIKQPHVAIQADVDDVLAQLLPLV 340 (564)
T ss_pred CCCCccccCCHhhcCCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhh
Confidence 7522222211 222345777999987422 22469999999999999998865
No 36
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=96.62 E-value=0.0079 Score=61.46 Aligned_cols=117 Identities=21% Similarity=0.252 Sum_probs=81.5
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCC--CeEeccCC---c------eeCCceEEEEe
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISN--NLQIGQTG---K------IVAPQLYIAIG 260 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~--~~qIG~sG---~------~v~P~lYia~G 260 (312)
|.+|+ -++-.|.|+......+.+++||+++|+-+-.|-.. .|.+|+ .+.+|..| . .-.++|.|++|
T Consensus 204 L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~g--kg~i~~~hp~~~G~~g~~~~~~~~~~~~~aDlvl~lG 281 (572)
T PRK06456 204 LINAERPIILVGTGVVWSNATPEVLELAELLHIPIVSTFPG--KTAIPHDHPLYFGPMGYYGRAEASMAALESDAMLVVG 281 (572)
T ss_pred HHhCCCcEEEECCCCcccchHHHHHHHHHHhCCCEEEcCcc--CcCCCCCCccccccCCCCCCHHHHHHHHhCCEEEEEC
Confidence 45554 56777888876677899999999999988766443 577774 45677655 2 24689999999
Q ss_pred eccchhhhcc---cCC-CcEEEEEcCCCCCCc-ccccceEEeecHhHHHHHHHhhh
Q psy9406 261 ISGAIQHLSG---MKD-SKIIVAINQDEDAPI-FDISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 261 ISGa~qH~~G---~~~-s~~IvAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l 311 (312)
-+=.---+.+ +.. ...+|-||.||+-.= ...+|..|++|+..+|..|++.+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 337 (572)
T PRK06456 282 ARFSDRTFTSYDEMVETRKKFIMVNIDPTDGEKAIKVDVGIYGNAKIILRELIKAI 337 (572)
T ss_pred CCCchhhccccccccCCCCeEEEEeCChHHhCCccCCCeEEecCHHHHHHHHHHHh
Confidence 7622111111 111 345788999987421 12379999999999999998865
No 37
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=96.61 E-value=0.0067 Score=61.97 Aligned_cols=116 Identities=19% Similarity=0.240 Sum_probs=80.3
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCCCe--EeccCCcee---------CCceEEEEe
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISNNL--QIGQTGKIV---------APQLYIAIG 260 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~~~--qIG~sG~~v---------~P~lYia~G 260 (312)
|.+|+ -++=+|.|+......+.+.+||++||+-|-+|--. .|.+|.++ .+|..|..- ..++.|++|
T Consensus 207 L~~A~rPvil~G~g~~~~~a~~~l~~lae~l~~pv~tt~~g--kg~ip~~hpl~~G~~G~~~~~~~~~~~~~aD~vl~lG 284 (566)
T PRK07282 207 LSKAKKPVILAGGGINYAEAATELNAFAERYQIPVVTTLLG--QGTIATSHPLFLGMGGMHGSYAANIAMTEADFMINIG 284 (566)
T ss_pred HHcCCCcEEEECCCcCcccHHHHHHHHHHHhCCCEEecccc--CCCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEEC
Confidence 34454 56666778876667889999999999999887433 57777664 678766422 449999999
Q ss_pred eccchhhhcc---cCCCcEEEEEcCCCCCCccc--ccceEEeecHhHHHHHHHhhh
Q psy9406 261 ISGAIQHLSG---MKDSKIIVAINQDEDAPIFD--ISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 261 ISGa~qH~~G---~~~s~~IvAIN~D~~ApIf~--~aDygiVgD~~~vlp~l~~~l 311 (312)
-+=.-..+.+ +.....+|=||.||.- |-+ ..|..|++|+..+|.+|++.+
T Consensus 285 ~~l~~~~~~~~~~~~~~~~~i~id~d~~~-i~~~~~~~~~i~~D~~~~L~~L~~~l 339 (566)
T PRK07282 285 SRFDDRLTGNPKTFAKNAKVAHIDIDPAE-IGKIIKTDIPVVGDAKKALQMLLAEP 339 (566)
T ss_pred CCCCccccCChhhcCCCCeEEEEECCHHH-hCCCCCCCeEEecCHHHHHHHHHHhh
Confidence 7633222211 1223457779999852 211 359999999999999998865
No 38
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=96.50 E-value=0.0094 Score=60.58 Aligned_cols=116 Identities=21% Similarity=0.262 Sum_probs=81.6
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCC--CCeEeccCCc--------ee-CCceEEEEe
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYIS--NNLQIGQTGK--------IV-APQLYIAIG 260 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~--~~~qIG~sG~--------~v-~P~lYia~G 260 (312)
|.+|+ .++-+|+|+...+..+.+.+||+.||+-|-.|-.. .|.+| +....|..|. .+ .+++.|++|
T Consensus 193 L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~g--kg~~~~~hp~~~G~~g~~~~~~~~~~l~~aD~vl~lG 270 (548)
T PRK08978 193 LAQAKKPVLYVGGGVGMAGAVPALREFLAATGMPAVATLKG--LGAVEADHPYYLGMLGMHGTKAANLAVQECDLLIAVG 270 (548)
T ss_pred HHcCCCCEEEECCCccccchHHHHHHHHHHHCCCEEEcccc--CCCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEEc
Confidence 34454 56666778877777899999999999999887333 47776 3456776652 12 789999999
Q ss_pred eccchhhhcc---cCCCcEEEEEcCCCCC--CcccccceEEeecHhHHHHHHHhhh
Q psy9406 261 ISGAIQHLSG---MKDSKIIVAINQDEDA--PIFDISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 261 ISGa~qH~~G---~~~s~~IvAIN~D~~A--pIf~~aDygiVgD~~~vlp~l~~~l 311 (312)
-+=....+.+ +.....+|-||.||+- . ....|+.|++|+.++|+.|.+.+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~-~~~~~~~i~~d~~~~l~~l~~~~ 325 (548)
T PRK08978 271 ARFDDRVTGKLNTFAPHAKVIHLDIDPAEINK-LRQAHVALQGDLNALLPALQQPL 325 (548)
T ss_pred CCCCccccCCccccCCCCeEEEEECCHHHhCC-CCCCCeEEecCHHHHHHHHHHhc
Confidence 7633333322 2223468889999852 2 12469999999999999998754
No 39
>PRK05858 hypothetical protein; Provisional
Probab=96.47 E-value=0.006 Score=61.97 Aligned_cols=117 Identities=15% Similarity=0.196 Sum_probs=78.8
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCCCe--EeccCCc--eeCCceEEEEeeccchh-
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISNNL--QIGQTGK--IVAPQLYIAIGISGAIQ- 266 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~~~--qIG~sG~--~v~P~lYia~GISGa~q- 266 (312)
|.+|+ -++-+|+|....+..+.+.+||++||+-|..|-- ..|.+|.++ .+|.+.. .-+.++.|++|.+=...
T Consensus 200 L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~tt~~--~kg~~~~~hpl~~~~~~~~~l~~aD~vl~vG~~~~~~~ 277 (542)
T PRK05858 200 LAEAQRPVIMAGTDVWWGHAEAALLRLAEELGIPVLMNGM--GRGVVPADHPLAFSRARGKALGEADVVLVVGVPMDFRL 277 (542)
T ss_pred HHhCCCcEEEECCCccccChHHHHHHHHHHhCCCEEEcCC--cCCCCCCCCchhhhHHHHHHHHhCCEEEEECCCCcccc
Confidence 44553 4555677876667788999999999998887664 357777543 3454432 33779999999631000
Q ss_pred hhcccCCCcEEEEEcCCCCCCcc-cccceEEeecHhHHHHHHHhhh
Q psy9406 267 HLSGMKDSKIIVAINQDEDAPIF-DISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 267 H~~G~~~s~~IvAIN~D~~ApIf-~~aDygiVgD~~~vlp~l~~~l 311 (312)
...-....+.+|-||.||...-. ...|+++++|+.+++++|.+++
T Consensus 278 ~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l 323 (542)
T PRK05858 278 GFGVFGGTAQLVHVDDAPPQRAHHRPVAAGLYGDLSAILSALAGAG 323 (542)
T ss_pred cccccCCCCEEEEECCCHHHhcCCCCCceEEeCCHHHHHHHHHHhc
Confidence 01112223578889999854322 2469999999999999998876
No 40
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=96.47 E-value=0.0088 Score=60.57 Aligned_cols=117 Identities=17% Similarity=0.258 Sum_probs=77.9
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeec----HhhHhcCCCCCCeEeccCCc-------ee-CCceEEEE
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGAS----RAAVDAGYISNNLQIGQTGK-------IV-APQLYIAI 259 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~S----Rp~vd~gw~~~~~qIG~sG~-------~v-~P~lYia~ 259 (312)
|.+|+ .++-+|+|....+..+.+++||++||+-|-+| |.+++.. +...+|..|. .+ .++|-|++
T Consensus 203 L~~AkrPvIl~G~g~~~~~a~~~l~~lae~lg~pV~~t~~~~kg~~~~~---hp~~~G~~g~~~~~~~~~l~~aDlvl~l 279 (530)
T PRK07092 203 LDAARRPALVVGPAVDRAGAWDDAVRLAERHRAPVWVAPMSGRCSFPED---HPLFAGFLPASREKISALLDGHDLVLVI 279 (530)
T ss_pred HHcCCCcEEEECCCcchhhhHHHHHHHHHHHCCcEEEecCCCcCcCCCC---CccccCcCCccHHHHHHHHhhCCEEEEE
Confidence 45554 56667888776677889999999999988754 3333321 2234665442 22 79999999
Q ss_pred eeccchhhhccc----CCCcEEEEEcCCCCCCcccccceEEeecHhHHHHHHHhhhC
Q psy9406 260 GISGAIQHLSGM----KDSKIIVAINQDEDAPIFDISDYGLVGDLFEIIPKFIKYLN 312 (312)
Q Consensus 260 GISGa~qH~~G~----~~s~~IvAIN~D~~ApIf~~aDygiVgD~~~vlp~l~~~l~ 312 (312)
|-+=-..+..+. .....+|-||.|+...=-...|..|++|+.+++++|++.|+
T Consensus 280 G~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 336 (530)
T PRK07092 280 GAPVFTYHVEGPGPHLPEGAELVQLTDDPGEAAWAPMGDAIVGDIRLALRDLLALLP 336 (530)
T ss_pred CCcccccccCCccccCCCCCeEEEEeCChHHhcCCCCCCcccCCHHHHHHHHHHhhc
Confidence 964111222222 22456888999997521123688999999999999998763
No 41
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=96.45 E-value=0.013 Score=60.25 Aligned_cols=117 Identities=20% Similarity=0.284 Sum_probs=81.7
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCCC--eEeccCCce---------eCCceEEEEe
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISNN--LQIGQTGKI---------VAPQLYIAIG 260 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~~--~qIG~sG~~---------v~P~lYia~G 260 (312)
|.+|+ .++-+|.|+...+..+.+++||+.+|+-+-.|=.. .|.+|++ ..+|..|.. =..++-|++|
T Consensus 197 L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tT~~g--kg~~p~~hpl~~G~~g~~g~~~~~~~~~~aDlvl~lG 274 (588)
T PRK07525 197 LSEAKFPVILSGAGVVLSDAIEECKALAERLDAPVACGYLH--NDAFPGSHPLWVGPLGYNGSKAAMELIAKADVVLALG 274 (588)
T ss_pred HHhCCCCEEEECCCccccChHHHHHHHHHHhCCCeEEcccc--cccCCCCCccccccCcccCcHHHHHHHHhCCEEEEEC
Confidence 55665 36666778777788899999999999999877322 4677754 677766522 2569999999
Q ss_pred eccchhhh---cc---cCCCcEEEEEcCCCCCC-cccccceEEeecHhHHHHHHHhhh
Q psy9406 261 ISGAIQHL---SG---MKDSKIIVAINQDEDAP-IFDISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 261 ISGa~qH~---~G---~~~s~~IvAIN~D~~Ap-If~~aDygiVgD~~~vlp~l~~~l 311 (312)
-+=.-.-. .+ ......||=||.|++-. -...+|++|++|+..+|++|++.|
T Consensus 275 ~~l~~~~~~~~~~~~~~~~~~~iI~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 332 (588)
T PRK07525 275 TRLNPFGTLPQYGIDYWPKDAKIIQVDINPDRIGLTKKVSVGICGDAKAVARELLARL 332 (588)
T ss_pred CCCchhhcccccccccCCCCCeEEEEECCHHHhCCCCCCCceEecCHHHHHHHHHHhh
Confidence 65221100 01 11235688899998742 123579999999999999998876
No 42
>PRK07524 hypothetical protein; Provisional
Probab=96.42 E-value=0.0074 Score=61.14 Aligned_cols=116 Identities=21% Similarity=0.320 Sum_probs=80.1
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCC--CeEeccCCce-------eCCceEEEEeec
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISN--NLQIGQTGKI-------VAPQLYIAIGIS 262 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~--~~qIG~sG~~-------v~P~lYia~GIS 262 (312)
|.+|+ .++-.|.|.. +..+.+.+||++||+-|-.|- --.|.+|+ ...+|.+|.. =..+|.|++|-+
T Consensus 198 L~~AkrPvil~G~g~~--~a~~~l~~lae~l~~pV~tt~--~~kg~~p~~hp~~~G~~~~~~~~~~~~~~aDlvl~vG~~ 273 (535)
T PRK07524 198 LAAARRPLILAGGGAL--AAAAALRALAERLDAPVALTI--NAKGLLPAGHPLLLGASQSLPAVRALIAEADVVLAVGTE 273 (535)
T ss_pred HHhCCCcEEEECCChH--HHHHHHHHHHHHHCCCEEEcc--cccccCCCCChhhccCCCCCHHHHHHHHhCCEEEEeCCC
Confidence 45664 4555577775 457899999999999888773 23567764 4567776542 167999999965
Q ss_pred -cchh----hhcccCCCcEEEEEcCCCCCCc-ccccceEEeecHhHHHHHHHhhhC
Q psy9406 263 -GAIQ----HLSGMKDSKIIVAINQDEDAPI-FDISDYGLVGDLFEIIPKFIKYLN 312 (312)
Q Consensus 263 -Ga~q----H~~G~~~s~~IvAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l~ 312 (312)
+... +.........+|-||.||+..- .-..|..|++|..++|.+|++.++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~ 329 (535)
T PRK07524 274 LGETDYDVYFDGGFPLPGELIRIDIDPDQLARNYPPALALVGDARAALEALLARLP 329 (535)
T ss_pred cCccccccccccccCCCCCEEEEECCHHHhCCCcCCCceEecCHHHHHHHHHHhcc
Confidence 2222 1123433356889999996432 224799999999999999998763
No 43
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=96.39 E-value=0.012 Score=60.02 Aligned_cols=117 Identities=21% Similarity=0.256 Sum_probs=81.6
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCCC--eEeccCCce---------eCCceEEEEe
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISNN--LQIGQTGKI---------VAPQLYIAIG 260 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~~--~qIG~sG~~---------v~P~lYia~G 260 (312)
|.+|+ .+|-+|.|+...+..+.+.+||+.||+-|-.|- --.|.+|++ ..+|..|.. -.++|.|++|
T Consensus 198 L~~AkrPvi~~G~g~~~~~a~~~l~~lae~l~~pv~tt~--~~kg~~~e~hp~~~G~~g~~~~~~~~~~l~~aD~vl~lG 275 (558)
T TIGR00118 198 INLAKKPVILVGGGVIIAGASEELKELAERIQIPVTTTL--MGLGSFPEDHPLSLGMLGMHGTKTANLAVHECDLIIAVG 275 (558)
T ss_pred HHhCCCcEEEECCCccccchHHHHHHHHHHhCCCEEEcc--ccCCCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEEC
Confidence 34554 566667887766678899999999999998873 245778765 467766542 2479999999
Q ss_pred eccchhhhccc---CCCcEEEEEcCCCCCCcc-cccceEEeecHhHHHHHHHhhh
Q psy9406 261 ISGAIQHLSGM---KDSKIIVAINQDEDAPIF-DISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 261 ISGa~qH~~G~---~~s~~IvAIN~D~~ApIf-~~aDygiVgD~~~vlp~l~~~l 311 (312)
-+=..+.+.+. ..-..+|-||.|+.-.=. ...|..|++|..++|++|++.+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l 330 (558)
T TIGR00118 276 ARFDDRVTGNLAKFAPNAKIIHIDIDPAEIGKNVRVDIPIVGDARNVLEELLKKL 330 (558)
T ss_pred CCCCccccCchhhcCCCCcEEEEeCCHHHhCCcCCCCeEEecCHHHHHHHHHHhh
Confidence 65332333222 122357889999843111 1369999999999999998876
No 44
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=96.38 E-value=0.014 Score=59.79 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=78.5
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCCC--eEeccCCce--eCCceEEEEeeccch-h
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISNN--LQIGQTGKI--VAPQLYIAIGISGAI-Q 266 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~~--~qIG~sG~~--v~P~lYia~GISGa~-q 266 (312)
|.+|+ .++-.|.|+...+..+.+++||++||+-|-.|=- -.|-+|.+ ...|..... -..+|.|++|-+-.. +
T Consensus 217 L~~AkrPvi~~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~--gkg~~~~~hp~~~G~~~~~~~~~aDlvl~lG~~l~~~~ 294 (569)
T PRK08327 217 LAAAERPVIITWRAGRTAEGFASLRRLAEELAIPVVEYAG--EVVNYPSDHPLHLGPDPRADLAEADLVLVVDSDVPWIP 294 (569)
T ss_pred HHhCCCCEEEEecccCCcccHHHHHHHHHHhCCCEEecCC--CceeCCCCCccccccccchhhhhCCEEEEeCCCCCCcc
Confidence 34454 4555666887778899999999999998875422 23445443 456654322 258999999975322 2
Q ss_pred hhcccCCCcEEEEEcCCCCC-C---cccccceEEeecHhHHHHHHHhhhC
Q psy9406 267 HLSGMKDSKIIVAINQDEDA-P---IFDISDYGLVGDLFEIIPKFIKYLN 312 (312)
Q Consensus 267 H~~G~~~s~~IvAIN~D~~A-p---If~~aDygiVgD~~~vlp~l~~~l~ 312 (312)
+...+.....+|=||.|+.. . -.-..|+.|++|+..+|++|+++|+
T Consensus 295 ~~~~~~~~~~vi~Id~d~~~~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 344 (569)
T PRK08327 295 KKIRPDADARVIQIDVDPLKSRIPLWGFPCDLCIQADTSTALDQLEERLK 344 (569)
T ss_pred ccccCCCCCeEEEEeCChhhhcccccCcceeEEEecCHHHHHHHHHHHHh
Confidence 22222334568889999863 1 1234699999999999999998763
No 45
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=96.37 E-value=0.012 Score=60.79 Aligned_cols=116 Identities=19% Similarity=0.252 Sum_probs=80.0
Q ss_pred CCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCCC--eEeccCCc---------eeCCceEEEEee
Q psy9406 194 TSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISNN--LQIGQTGK---------IVAPQLYIAIGI 261 (312)
Q Consensus 194 ~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~~--~qIG~sG~---------~v~P~lYia~GI 261 (312)
.+|+ .++-+|.|+...+..+.+.+||++||+-|-.|-.. .|.+|.+ ..+|..|. .-..+|.|++|-
T Consensus 222 ~~AkrPvI~~G~g~~~~~a~~~l~~lae~l~~pV~tt~~g--kg~~p~~hpl~~G~~G~~g~~~~~~~l~~aDlvL~vG~ 299 (616)
T PRK07418 222 EEAERPLLYVGGGAISAGAHAELKELAERFQIPVTTTLMG--KGAFDEHHPLSVGMLGMHGTAYANFAVTECDLLIAVGA 299 (616)
T ss_pred HhCCCCEEEECCCcCcccHHHHHHHHHHHHCCCEEEccCC--CcCCCCCCcccccCCCCCCCHHHHHHHHhCCEEEEEcC
Confidence 4444 56667888876677889999999999988876653 5777654 35776663 236799999997
Q ss_pred ccchhhhc---ccCCCcEEEEEcCCCCCCc-ccccceEEeecHhHHHHHHHhhh
Q psy9406 262 SGAIQHLS---GMKDSKIIVAINQDEDAPI-FDISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 262 SGa~qH~~---G~~~s~~IvAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l 311 (312)
+=-...+. .+.....+|=||.||.--= ....|++|++|+..+|++|++++
T Consensus 300 ~~~~~~~~~~~~~~~~~~~i~id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~l 353 (616)
T PRK07418 300 RFDDRVTGKLDEFASRAKVIHIDIDPAEVGKNRRPDVPIVGDVRKVLVKLLERS 353 (616)
T ss_pred CCCccccCChhhcCCCCeEEEEeCCHHHhCCccCCCeEEecCHHHHHHHHHHhh
Confidence 52111111 1233345777999985211 12479999999999999999876
No 46
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=96.30 E-value=0.0099 Score=60.95 Aligned_cols=112 Identities=21% Similarity=0.291 Sum_probs=77.4
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCCCe--EeccCCc---------eeCCceEEEEe
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISNNL--QIGQTGK---------IVAPQLYIAIG 260 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~~~--qIG~sG~---------~v~P~lYia~G 260 (312)
|.+|+ -++-+|+|+. +..+.+.+||+++|.-+..|= -..|++|.++ .+|.+|. .-..+|-|++|
T Consensus 198 L~~A~rPvii~G~g~~--~a~~~l~~lae~~g~Pv~~t~--~gkg~~~~~hp~~~G~~G~~~~~~~~~~l~~aDlvl~lG 273 (578)
T PRK06546 198 INEAKKVTLFAGAGVR--GAHAEVLALAEKIKAPVGHSL--RGKEWIQYDNPFDVGMSGLLGYGAAHEAMHEADLLILLG 273 (578)
T ss_pred HHcCCCcEEEECcchH--HHHHHHHHHHHHhCcceEECc--ccccCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEEc
Confidence 45564 5555666664 456889999999999997762 2458887554 5776663 23678999999
Q ss_pred eccchhhhcccCCCcEEEEEcCCCCCCcc-cccceEEeecHhHHHHHHHhhh
Q psy9406 261 ISGAIQHLSGMKDSKIIVAINQDEDAPIF-DISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 261 ISGa~qH~~G~~~s~~IvAIN~D~~ApIf-~~aDygiVgD~~~vlp~l~~~l 311 (312)
-+ -..+. -.++ ..+|-||.|++.--. ...|+.|++|+..+|++|.+.|
T Consensus 274 ~~-~~~~~-~~~~-~~~I~vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~L 322 (578)
T PRK06546 274 TD-FPYDQ-FLPD-VRTAQVDIDPEHLGRRTRVDLAVHGDVAETIRALLPLV 322 (578)
T ss_pred CC-CChhh-cCCC-CcEEEEeCCHHHhCCCCCCCeEEEcCHHHHHHHHHHhh
Confidence 54 11111 1233 357889999985221 2479999999999999998876
No 47
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=96.20 E-value=0.017 Score=59.51 Aligned_cols=115 Identities=17% Similarity=0.156 Sum_probs=78.1
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCCC--eEeccCCc---------eeCCceEEEEe
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISNN--LQIGQTGK---------IVAPQLYIAIG 260 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~~--~qIG~sG~---------~v~P~lYia~G 260 (312)
|.+|+ -++-+|.|+. +..+.+.+||+++|+-|-+|-. -.|.+|.+ ..+|..|. .-..+|.|++|
T Consensus 205 L~~AkrPvi~~G~g~~--~a~~~l~~lae~~~~PV~tt~~--gkg~~~e~hp~~~G~~G~~g~~~a~~~~~~aDlvl~lG 280 (597)
T PRK08273 205 LNAGRKVAILVGAGAL--GATDEVIAVAERLGAGVAKALL--GKAALPDDLPWVTGSIGLLGTKPSYELMRECDTLLMVG 280 (597)
T ss_pred HhcCCCEEEEECcchH--hHHHHHHHHHHHhCCceeeccc--CcccCCCCCccceecCCCCccHHHHHHHHhCCEEEEeC
Confidence 45555 5666777774 4577899999999999988833 45666543 56776652 23478999999
Q ss_pred eccchhhhcccC-CCcEEEEEcCCCCCCc-ccccceEEeecHhHHHHHHHhhhC
Q psy9406 261 ISGAIQHLSGMK-DSKIIVAINQDEDAPI-FDISDYGLVGDLFEIIPKFIKYLN 312 (312)
Q Consensus 261 ISGa~qH~~G~~-~s~~IvAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l~ 312 (312)
-+=- .+...-+ ....+|-||.|++..- .-..|..|++|+.++|++|++.|+
T Consensus 281 ~~~~-~~~~~~~~~~~~~i~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 333 (597)
T PRK08273 281 SSFP-YSEFLPKEGQARGVQIDIDGRMLGLRYPMEVNLVGDAAETLRALLPLLE 333 (597)
T ss_pred CCCC-HHhcCCCCCCCeEEEEeCCHHHcCCCCCCCceEecCHHHHHHHHHHhhh
Confidence 7521 1111111 1236888999987543 223689999999999999988663
No 48
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=96.17 E-value=0.018 Score=58.62 Aligned_cols=116 Identities=16% Similarity=0.208 Sum_probs=79.8
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCCC--eEeccCCce--------e-CCceEEEEe
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISNN--LQIGQTGKI--------V-APQLYIAIG 260 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~~--~qIG~sG~~--------v-~P~lYia~G 260 (312)
|.+|+ .++-.|.|....+.++.+.+||+++|+-|-+|-. ..|.+|.+ ..+|..|.. + .++|.|++|
T Consensus 201 L~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~~pV~tt~~--~kg~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~lG 278 (557)
T PRK08199 201 LARAERPLVILGGSGWTEAAVADLRAFAERWGLPVACAFR--RQDLFDNRHPNYAGDLGLGINPALAARIREADLVLAVG 278 (557)
T ss_pred HHhCCCCEEEECCCcCchhHHHHHHHHHHHhCCCEEEcCC--cCCCCCCCChhhccCCcCcCCHHHHHHHHhCCEEEEeC
Confidence 44454 4555677877667789999999999999988733 35666654 347766542 2 689999999
Q ss_pred eccchhhhccc---C---CCcEEEEEcCCCCC--CcccccceEEeecHhHHHHHHHhhh
Q psy9406 261 ISGAIQHLSGM---K---DSKIIVAINQDEDA--PIFDISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 261 ISGa~qH~~G~---~---~s~~IvAIN~D~~A--pIf~~aDygiVgD~~~vlp~l~~~l 311 (312)
-+=....+.+. . ....+|-||.|+.. ..+ ..|+.|++|...+|++|.+.+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~i~vd~d~~~~~~~~-~~~~~i~~D~~~~l~~L~~~~ 336 (557)
T PRK08199 279 TRLGEVTTQGYTLLDIPVPRQTLVHVHPDAEELGRVY-RPDLAIVADPAAFAAALAALE 336 (557)
T ss_pred CCCccccccccccccccCCCCeEEEEeCCHHHhCCcc-CCCeEEecCHHHHHHHHHhcc
Confidence 65322222222 1 23468889999863 222 469999999999999998743
No 49
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=96.14 E-value=0.021 Score=58.77 Aligned_cols=117 Identities=16% Similarity=0.205 Sum_probs=80.5
Q ss_pred CCCCc-EEEEeCccCCCc--cchHHHHHHHHHhCCeeeecHhhHhcCCCCCC--eEeccCCc---------eeCCceEEE
Q psy9406 193 LTSAK-IVVAGGRGLGSS--KNFKILEGLADKLNAAIGASRAAVDAGYISNN--LQIGQTGK---------IVAPQLYIA 258 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~--e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~~--~qIG~sG~---------~v~P~lYia 258 (312)
|.+|+ -++-.|.|+... +..+.+.+||++||+-|-.|-. ..|.+|++ ..+|..|. .=..+|.|+
T Consensus 209 L~~A~rPvil~G~g~~~~~~~a~~~l~~lae~lg~pv~tt~~--gkg~~p~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~ 286 (595)
T PRK09107 209 LANAKRPVIYSGGGVINSGPEASRLLRELVELTGFPITSTLM--GLGAYPASGKNWLGMLGMHGTYEANMAMHDCDVMLC 286 (595)
T ss_pred HHhCCCcEEEECCcccccchhHHHHHHHHHHHHCCCEEECcc--ccccCCCCCCcccCCCCCCccHHHHHHHHhCCEEEE
Confidence 34554 566667787543 4788999999999999988765 46777754 46776663 114799999
Q ss_pred Eeeccchhhhcc---cCCCcEEEEEcCCCCCCc-ccccceEEeecHhHHHHHHHhhh
Q psy9406 259 IGISGAIQHLSG---MKDSKIIVAINQDEDAPI-FDISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 259 ~GISGa~qH~~G---~~~s~~IvAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l 311 (312)
+|-+=....+.+ ......+|=||.||.--= ....|.+|++|...+|.+|++++
T Consensus 287 lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 343 (595)
T PRK09107 287 VGARFDDRITGRLDAFSPNSKKIHIDIDPSSINKNVRVDVPIIGDVGHVLEDMLRLW 343 (595)
T ss_pred ECCCCCccccCchhhcCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhh
Confidence 996522122211 222344777999987532 22479999999999999998866
No 50
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=96.05 E-value=0.013 Score=59.62 Aligned_cols=117 Identities=11% Similarity=0.158 Sum_probs=80.0
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCCC--eEeccCCc--eeCCceEEEEeeccchhh
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISNN--LQIGQTGK--IVAPQLYIAIGISGAIQH 267 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~~--~qIG~sG~--~v~P~lYia~GISGa~qH 267 (312)
|.+|+ -++=.|.|+...+..+.+++||+++|+-|-.|--. .|.+|.+ ...|.++. .=..+|.|++|-+=....
T Consensus 203 L~~AkrPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~g--kg~~p~~hp~~~g~~~~~~~~~aDlvl~lG~~~~~~~ 280 (554)
T TIGR03254 203 LKDAKRPLILLGKGAAYAQADEEIREFVEKTGIPFLPMSMA--KGLLPDTHPQSAAAARSFALAEADVVMLVGARLNWLL 280 (554)
T ss_pred HHhCCCCEEEECCCccccChHHHHHHHHHHHCCCEEEcCCc--ceeCCCCCchhhhHHHHHHHhcCCEEEEECCCCchhh
Confidence 45553 55666777766677889999999999988766543 4667654 45676664 235699999996633222
Q ss_pred hcc----cCCCcEEEEEcCCCCCC-cccccceEEeecHhHHHHHHHhhh
Q psy9406 268 LSG----MKDSKIIVAINQDEDAP-IFDISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 268 ~~G----~~~s~~IvAIN~D~~Ap-If~~aDygiVgD~~~vlp~l~~~l 311 (312)
..| ....+.||=||.||+.. .....|..|++|+.++|.+|+++|
T Consensus 281 ~~~~~~~~~~~~~vI~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 329 (554)
T TIGR03254 281 SHGKGKLWGEDAKFIQVDIEPTEMDSNRPIAAPVVGDIGSVVQALLSAA 329 (554)
T ss_pred ccCchhhcCCCCcEEEcCCCHHHhCCCcCCceEEecCHHHHHHHHHHHh
Confidence 222 12234577788887642 223458999999999999999876
No 51
>PRK07064 hypothetical protein; Provisional
Probab=95.97 E-value=0.018 Score=58.34 Aligned_cols=114 Identities=16% Similarity=0.184 Sum_probs=78.8
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCCC--eEeccCCc------e-eCCceEEEEeec
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISNN--LQIGQTGK------I-VAPQLYIAIGIS 262 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~~--~qIG~sG~------~-v~P~lYia~GIS 262 (312)
|.+|+ -++-+|.|+. +.-+.+++||+ +|+-|-+|-.. .|.+|++ ..+|..|- . -.++|-|++|-+
T Consensus 200 l~~AkrPvi~~G~g~~--~a~~~l~~lae-~~~pv~~t~~~--kg~~~~~hp~~~G~~~~~~~~~~~~~~aDlvl~iG~~ 274 (544)
T PRK07064 200 LAAARRPLLWLGGGAR--HAGAEVKRLVD-LGFGVVTSTQG--RGVVPEDHPASLGAFNNSAAVEALYKTCDLLLVVGSR 274 (544)
T ss_pred HHhCCCCEEEECCChH--hHHHHHHHHHH-cCCCEEEccCc--cccCCCCChhhcccCCCCHHHHHHHHhCCEEEEecCC
Confidence 45554 5666677765 34568899999 99999776433 4777754 46776551 1 258999999976
Q ss_pred cchhhhccc--CCCcEEEEEcCCCCCC-cccccceEEeecHhHHHHHHHhhh
Q psy9406 263 GAIQHLSGM--KDSKIIVAINQDEDAP-IFDISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 263 Ga~qH~~G~--~~s~~IvAIN~D~~Ap-If~~aDygiVgD~~~vlp~l~~~l 311 (312)
=....+.+. ...+.+|-||.||+.. -+...|+.+.+|...+|++|++.+
T Consensus 275 ~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l 326 (544)
T PRK07064 275 LRGNETLKYSLALPRPLIRVDADAAADGRGYPNDLFVHGDAARVLARLADRL 326 (544)
T ss_pred CCcccccccccCCCCceEEEeCCHHHhCCcCCCCceEecCHHHHHHHHHHhh
Confidence 443333332 1124688899998743 234579999999999999998865
No 52
>PRK08266 hypothetical protein; Provisional
Probab=95.92 E-value=0.016 Score=58.87 Aligned_cols=114 Identities=20% Similarity=0.195 Sum_probs=77.4
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCC--CeEeccCCc---eeCCceEEEEeeccchh
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISN--NLQIGQTGK---IVAPQLYIAIGISGAIQ 266 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~--~~qIG~sG~---~v~P~lYia~GISGa~q 266 (312)
|.+|+ -++-+|.|.. +..+.+.+||+++|+-|-.|... .|.+|+ ....|..+. .-.++|.|++|-+=..+
T Consensus 202 L~~AkrPvIv~G~g~~--~a~~~l~~lae~~g~pv~tt~~~--kg~~~~~hp~~~g~~~~~~~~~~aDlvl~lG~~~~~~ 277 (542)
T PRK08266 202 IAAAKNPMIFVGGGAA--GAGEEIRELAEMLQAPVVAFRSG--RGIVSDRHPLGLNFAAAYELWPQTDVVIGIGSRLELP 277 (542)
T ss_pred HHhCCCCEEEECCChh--hHHHHHHHHHHHHCCCEEEeccc--cccCCCCCccccCCHHHHHHHHhCCEEEEeCCCcCcc
Confidence 34454 5555666753 46789999999999998887644 577774 344554321 23689999999653323
Q ss_pred hhccc---CCCcEEEEEcCCCCCCcccccceEEeecHhHHHHHHHhhh
Q psy9406 267 HLSGM---KDSKIIVAINQDEDAPIFDISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 267 H~~G~---~~s~~IvAIN~D~~ApIf~~aDygiVgD~~~vlp~l~~~l 311 (312)
..+. .....+|-||.|++---....|+.|++|..++|++|+++|
T Consensus 278 -~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l 324 (542)
T PRK08266 278 -TFRWPWRPDGLKVIRIDIDPTEMRRLKPDVAIVADAKAGTAALLDAL 324 (542)
T ss_pred -cccccccCCCCcEEEEECCHHHhCCcCCCceEecCHHHHHHHHHHhh
Confidence 2222 2234688899987752113469999999999999998876
No 53
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=95.83 E-value=0.032 Score=57.13 Aligned_cols=117 Identities=19% Similarity=0.250 Sum_probs=79.2
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCC--CeEeccCCce--------e-CCceEEEEe
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISN--NLQIGQTGKI--------V-APQLYIAIG 260 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~--~~qIG~sG~~--------v-~P~lYia~G 260 (312)
|.+|+ .++-.|.|+...+..+.+.+||+++|+-|-.|-.. .|-+|+ ...+|..|.. + ..+|.|++|
T Consensus 193 L~~A~rP~i~~G~g~~~~~a~~~l~~lae~~~~PV~tt~~g--kg~~p~~hp~~~G~~g~~g~~~~~~~l~~aDlil~lG 270 (579)
T TIGR03457 193 LAEAKFPVIISGGGVVMGDAVEECKALAERLGAPVVNSYLH--NDSFPASHPLWVGPLGYQGSKAAMKLISDADVVLALG 270 (579)
T ss_pred HHhCCCCEEEECcCccccChHHHHHHHHHHhCCCEEEcccc--cccCCCCCchhccCCcCcchHHHHHHHHhCCEEEEEC
Confidence 45565 46666778777778999999999999999887433 355554 4567765532 1 579999999
Q ss_pred eccchhhh---cc---cCCCcEEEEEcCCCCCCcc-cccceEEeecHhHHHHHHHhhh
Q psy9406 261 ISGAIQHL---SG---MKDSKIIVAINQDEDAPIF-DISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 261 ISGa~qH~---~G---~~~s~~IvAIN~D~~ApIf-~~aDygiVgD~~~vlp~l~~~l 311 (312)
-+=..... .+ ......+|-||.|+.-.=. ...|++|++|+..+|++|++.|
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 328 (579)
T TIGR03457 271 TRLGPFGTLPQYGIDYWPKNAKIIQVDANAKMIGLVKKVTVGICGDAKAAAAEILQRL 328 (579)
T ss_pred CCCcccccccccccccCCCCCeEEEEeCCHHHhCCCCCCCeeEecCHHHHHHHHHHhh
Confidence 54221111 01 1223567889998864211 1379999999999999999876
No 54
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=95.83 E-value=0.019 Score=58.63 Aligned_cols=117 Identities=14% Similarity=0.167 Sum_probs=81.0
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCCCe--EeccCCc--eeCCceEEEEeeccchhh
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISNNL--QIGQTGK--IVAPQLYIAIGISGAIQH 267 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~~~--qIG~sG~--~v~P~lYia~GISGa~qH 267 (312)
|.+|+ -++-+|.|+...+..+.+.+||++||+-|-.|=.. .|.+|+++ .+|.++. .=..+|.|++|-+=....
T Consensus 210 L~~AkrPvIi~G~g~~~~~a~~~l~~lae~l~iPV~tt~~g--kg~~~e~hpl~~G~~~~~~l~~aDlvl~lG~~~~~~~ 287 (569)
T PRK09259 210 LKKAKRPLIILGKGAAYAQADEQIREFVEKTGIPFLPMSMA--KGLLPDTHPQSAAAARSLALANADVVLLVGARLNWLL 287 (569)
T ss_pred HHhCCCCEEEECcCccccChHHHHHHHHHHHCCCEEecccc--cccCCCCChhhhhHHHHHHHhcCCEEEEeCCCCchhc
Confidence 34554 56667788876678899999999999988776543 57787664 4676654 336899999996421111
Q ss_pred hcc----cCCCcEEEEEcCCCCCCc-ccccceEEeecHhHHHHHHHhhh
Q psy9406 268 LSG----MKDSKIIVAINQDEDAPI-FDISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 268 ~~G----~~~s~~IvAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l 311 (312)
..+ ...-..||=||.|++..= ....++.+++|+..+|++|++.+
T Consensus 288 ~~~~~~~~~~~~~ii~Id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l 336 (569)
T PRK09259 288 SHGKGKTWGADKKFIQIDIEPQEIDSNRPIAAPVVGDIGSVMQALLAGL 336 (569)
T ss_pred ccCchhccCCCCcEEEecCChHHhcCCccCceeEecCHHHHHHHHHHHh
Confidence 111 112245777888887532 23468999999999999999876
No 55
>PLN02470 acetolactate synthase
Probab=95.80 E-value=0.034 Score=57.04 Aligned_cols=115 Identities=16% Similarity=0.137 Sum_probs=76.6
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCCCe--EeccCCce---------eCCceEEEEe
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISNNL--QIGQTGKI---------VAPQLYIAIG 260 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~~~--qIG~sG~~---------v~P~lYia~G 260 (312)
|.+|+ .++-+|+|+. ...+.+.+||+++|+-|-.|-. ..|.+|.++ .+|..|.. -.++|.|++|
T Consensus 212 L~~A~rPvI~~G~g~~--~a~~~l~~lae~~~~pv~tt~~--gkg~~~~~hpl~~G~~G~~~~~~~~~~~~~aDlvl~lG 287 (585)
T PLN02470 212 ISESKRPVVYVGGGCL--NSSEELREFVELTGIPVASTLM--GLGAFPASDELSLQMLGMHGTVYANYAVDSADLLLAFG 287 (585)
T ss_pred HHcCCCCEEEECCChh--hhHHHHHHHHHHhCCCEEEccC--ccccCCCCCcccccCCCCCCCHHHHHHHHhCCEEEEEC
Confidence 44554 4555566775 4567899999999998866554 367787654 47776642 2479999999
Q ss_pred eccchhhhcc---cCCCcEEEEEcCCCCC-CcccccceEEeecHhHHHHHHHhhh
Q psy9406 261 ISGAIQHLSG---MKDSKIIVAINQDEDA-PIFDISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 261 ISGa~qH~~G---~~~s~~IvAIN~D~~A-pIf~~aDygiVgD~~~vlp~l~~~l 311 (312)
-+=....+.+ ......+|=||.|+.- --....|.+|++|+..+|..|+++|
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l 342 (585)
T PLN02470 288 VRFDDRVTGKLEAFASRASIVHIDIDPAEIGKNKQPHVSVCADVKLALQGLNKLL 342 (585)
T ss_pred CCCcccccCChhhcCCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhh
Confidence 7632222221 1222346779998742 0112369999999999999998876
No 56
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=95.67 E-value=0.037 Score=56.64 Aligned_cols=113 Identities=21% Similarity=0.300 Sum_probs=74.6
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCCC--eEeccCCce---------eCCceEEEEe
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISNN--LQIGQTGKI---------VAPQLYIAIG 260 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~~--~qIG~sG~~---------v~P~lYia~G 260 (312)
|.+|+ -++-+|+|.. +..+.+.+||++||+-|-+|-. -.|.+|.+ ...|..|.. -.++|-|++|
T Consensus 198 L~~AkrPvii~G~g~~--~a~~~l~~lae~l~~PV~tt~~--gkg~~~~~hp~~~G~~G~~~~~~~~~~~~~aDlvl~lG 273 (574)
T PRK09124 198 LNGSSNITLLCGSGCA--GAHDELVALAETLKAPIVHALR--GKEHVEYDNPYDVGMTGLIGFSSGYHAMMNCDTLLMLG 273 (574)
T ss_pred HHcCCCCEEEECcChH--hHHHHHHHHHHHhCCceEEccc--ccccCCCCCcccccCCccCCCHHHHHHHHhCCEEEEEC
Confidence 44554 3444556763 4567899999999999988744 34566543 467776532 2479999999
Q ss_pred eccchhhhcccCCCcEEEEEcCCCCCCc-ccccceEEeecHhHHHHHHHhhh
Q psy9406 261 ISGAIQHLSGMKDSKIIVAINQDEDAPI-FDISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 261 ISGa~qH~~G~~~s~~IvAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l 311 (312)
-+=..... ......+|-||.|+.--= ....|+.|++|+.++|.+|++++
T Consensus 274 ~~~~~~~~--~~~~~~ii~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 323 (574)
T PRK09124 274 TDFPYRQF--YPTDAKIIQIDINPGSLGRRSPVDLGLVGDVKATLAALLPLL 323 (574)
T ss_pred CCCCcccc--cCCCCcEEEeeCCHHHhCCCCCCCeEEEccHHHHHHHHHHhh
Confidence 65322111 122245777999986311 11369999999999999998765
No 57
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=95.52 E-value=0.042 Score=54.22 Aligned_cols=113 Identities=18% Similarity=0.100 Sum_probs=72.9
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeec---HhhHhcCCCCCCeEeccC---------CceeCCceEEEE
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGAS---RAAVDAGYISNNLQIGQT---------GKIVAPQLYIAI 259 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~S---Rp~vd~gw~~~~~qIG~s---------G~~v~P~lYia~ 259 (312)
|.+|+ -++-+|.|+.. ...+.+.+||+++|+-|-.| |-.++.. ..+|.- -+.+.++|.|++
T Consensus 208 l~~AkrPvi~~G~g~~~-~a~~~l~~lae~~~~PV~tt~~~~~~~~~~-----~~~G~~~~~~~~~~~~~~~~aDlvl~l 281 (432)
T TIGR00173 208 LNQAKRGVIVAGPLPPA-EDAEALAALAEALGWPLLADPLSGLRGGPH-----LVIDHYDLLLANPELREELQPDLVIRF 281 (432)
T ss_pred HhhcCCcEEEEcCCCcH-HHHHHHHHHHHhCCCeEEEeCCCCCCCCCC-----CCcCHHHHHhcCCchhhhCCCCEEEEe
Confidence 44554 35556777764 36788999999999988765 3333321 223311 123489999999
Q ss_pred eec-cchhhhccc-CCCcEEEEEcCCCCCCc-ccccceEEeecHhHHHHHHHhhh
Q psy9406 260 GIS-GAIQHLSGM-KDSKIIVAINQDEDAPI-FDISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 260 GIS-Ga~qH~~G~-~~s~~IvAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l 311 (312)
|-. +.......+ .....+|-|+.||...= +...|.+|++|..++|.+|.+.+
T Consensus 282 G~~~~~~~~~~~~~~~~~~~i~vd~d~~~~~~~~~~~~~i~~D~~~~l~~l~~~~ 336 (432)
T TIGR00173 282 GGPPVSKRLRQWLARQPAEYWVVDPDPGWLDPSHHATTRLEASPAEFAEALAGLL 336 (432)
T ss_pred CCCcchhHHHHHHhCCCCcEEEECCCCCccCCCCCceEEEEECHHHHHHHhhhcc
Confidence 965 222222222 22346788999886421 23469999999999999998776
No 58
>PRK08611 pyruvate oxidase; Provisional
Probab=95.19 E-value=0.076 Score=54.44 Aligned_cols=112 Identities=23% Similarity=0.327 Sum_probs=74.2
Q ss_pred CCCC-cEEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCC--CeEeccCCc--------ee-CCceEEEEe
Q psy9406 193 LTSA-KIVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISN--NLQIGQTGK--------IV-APQLYIAIG 260 (312)
Q Consensus 193 l~~A-~vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~--~~qIG~sG~--------~v-~P~lYia~G 260 (312)
|..| +-++-+|.|+. ...+.+.+||+++|+-|-.|-+. .|.+|. ...+|..|. .+ .++|.|++|
T Consensus 200 L~~AkrPvil~G~g~~--~a~~~l~~lae~~~~PV~tt~~g--kg~~~~~hp~~~G~~g~~~~~~a~~~l~~aDlvl~iG 275 (576)
T PRK08611 200 INKAKKPVILAGLGAK--HAKEELLAFAEKAKIPIIHTLPA--KGIIPDDHPYSLGNLGKIGTKPAYEAMQEADLLIMVG 275 (576)
T ss_pred HHcCCCcEEEECcCcc--hHHHHHHHHHHHhCCCEEEcccc--ccccCCCCccccccCCCCCcHHHHHHHHhCCEEEEeC
Confidence 3444 34555566664 34578999999999999887554 455553 345665542 23 489999999
Q ss_pred eccchhhhcccCCCcEEEEEcCCCCCCccc--ccceEEeecHhHHHHHHHhhh
Q psy9406 261 ISGAIQHLSGMKDSKIIVAINQDEDAPIFD--ISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 261 ISGa~qH~~G~~~s~~IvAIN~D~~ApIf~--~aDygiVgD~~~vlp~l~~~l 311 (312)
.+=...-. ......+|-||.|+.- |-+ ..|..|++|...+|.+|.+++
T Consensus 276 ~~~~~~~~--~~~~~~~i~id~d~~~-i~~~~~~~~~i~~D~~~~l~~L~~~l 325 (576)
T PRK08611 276 TNYPYVDY--LPKKAKAIQIDTDPAN-IGKRYPVNVGLVGDAKKALHQLTENI 325 (576)
T ss_pred CCCCcccc--CCCCCcEEEEeCCHHH-cCCccCCCeeEecCHHHHHHHHHHhc
Confidence 76321111 1112468889999853 211 369999999999999998876
No 59
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=94.96 E-value=0.097 Score=53.29 Aligned_cols=110 Identities=18% Similarity=0.158 Sum_probs=74.7
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCCC--eEeccCCc--------ee-CCceEEEEe
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISNN--LQIGQTGK--------IV-APQLYIAIG 260 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~~--~qIG~sG~--------~v-~P~lYia~G 260 (312)
|.+|+ -++-+|.|.. ...+.+++||+++|+-|-.| .--.|.+|++ ..+|..|. .+ .++|-|++|
T Consensus 192 L~~AkrPvii~G~g~~--~a~~~l~~lAe~~~~PV~tt--~~gkg~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~lG 267 (549)
T PRK06457 192 IKESEKPVLLIGGGTR--GLGKEINRFAEKIGAPIIYT--LNGKGILPDLDPKVMGGIGLLGTKPSIEAMDKADLLIMLG 267 (549)
T ss_pred HHcCCCcEEEECcchh--hHHHHHHHHHHHHCCCEEEc--ccccccCCCCChhhccCCCCCCCHHHHHHHHhCCEEEEEC
Confidence 44453 4555667765 34478999999999999888 4467888855 47777662 22 589999999
Q ss_pred eccchhhhcccCCCcEEEEEcCCCCCCc-ccccceEEeecHhHHHHHHH
Q psy9406 261 ISGAIQHLSGMKDSKIIVAINQDEDAPI-FDISDYGLVGDLFEIIPKFI 308 (312)
Q Consensus 261 ISGa~qH~~G~~~s~~IvAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~ 308 (312)
.+ .....=......+|-||.|+...= ...+|..|++|+..+|..+.
T Consensus 268 ~~--~~~~~~~~~~~~ii~id~d~~~~~~~~~~~~~i~~d~~~~l~~~~ 314 (549)
T PRK06457 268 TS--FPYVNFLNKSAKVIQVDIDNSNIGKRLDVDLSYPIPVAEFLNIDI 314 (549)
T ss_pred CC--CChhhcCCCCCcEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHh
Confidence 65 222111222356888999986421 12579999999999996543
No 60
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=94.89 E-value=0.087 Score=54.00 Aligned_cols=111 Identities=19% Similarity=0.241 Sum_probs=72.7
Q ss_pred EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCC--CCeEeccCCc---------eeCCceEEEEeeccch-
Q psy9406 198 IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYIS--NNLQIGQTGK---------IVAPQLYIAIGISGAI- 265 (312)
Q Consensus 198 vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~--~~~qIG~sG~---------~v~P~lYia~GISGa~- 265 (312)
-++-+|.|.. ...+.+.+||++||+-|-.|-.. .|-+| |....|..|. .-..+|.|++|.+=-.
T Consensus 203 Pvil~G~g~~--~a~~~l~~lae~l~~PV~tt~~g--kg~~~~~hpl~~G~~g~~~~~~~~~~l~~aDlvl~vG~~~~~~ 278 (575)
T TIGR02720 203 PVIYYGIGAR--KAGEELEALSEKLKIPLISTGLA--KGIIEDRYPAYLGSAYRVAQKPANEALFQADLVLFVGNNYPFA 278 (575)
T ss_pred cEEEECcchh--hHHHHHHHHHHHhCCCEEEcccc--cccCCCCCcccccCCcCCCcHHHHHHHHhCCEEEEeCCCCCcc
Confidence 3444466665 34578999999999988766554 34444 3455665553 2358999999975211
Q ss_pred hhhcccCCCcEEEEEcCCCCCCc-ccccceEEeecHhHHHHHHHhhhC
Q psy9406 266 QHLSGMKDSKIIVAINQDEDAPI-FDISDYGLVGDLFEIIPKFIKYLN 312 (312)
Q Consensus 266 qH~~G~~~s~~IvAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l~ 312 (312)
+..--++..+.+|-||.|++..= ....|+.|++|..++|.+|.+.|+
T Consensus 279 ~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 326 (575)
T TIGR02720 279 EVSKAFKNTKYFIQIDIDPAKLGKRHHTDIAVLADAKKALAAILAQVE 326 (575)
T ss_pred ccccccCCCceEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHHHhcc
Confidence 11111344566688999886421 124689999999999999988763
No 61
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=94.81 E-value=0.14 Score=52.27 Aligned_cols=117 Identities=24% Similarity=0.289 Sum_probs=77.7
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCCCeE--eccCCcee--------C-CceEEEEe
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISNNLQ--IGQTGKIV--------A-PQLYIAIG 260 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~~~q--IG~sG~~v--------~-P~lYia~G 260 (312)
|.+|+ -++=.|.|+...+..+.+.+||+++|+=|-+|=.. .|-+|+++- .|..|..- . -+|-|++|
T Consensus 197 L~~AkrPvIl~G~G~~~a~a~~~l~~lae~~~~Pv~~t~~g--kg~~p~~hp~~lG~~g~~g~~~a~~~~~~aDlll~vG 274 (550)
T COG0028 197 LAEAKRPVILAGGGVRRAGASEELRELAEKLGAPVVTTLMG--KGAVPEDHPLSLGMLGMHGTKAANEALEEADLLLAVG 274 (550)
T ss_pred HHhCCCCEEEECCCccccccHHHHHHHHHHHCCCEEEccCc--CccCCCCCccccccccccccHHHHHHhhcCCEEEEec
Confidence 45565 55666777777888999999999999988877443 355655544 66666553 3 78889988
Q ss_pred eccchhh--hccc-CCCcEEEEEcCCCCCCc-ccccceEEeecHhHHHHHHHhhhC
Q psy9406 261 ISGAIQH--LSGM-KDSKIIVAINQDEDAPI-FDISDYGLVGDLFEIIPKFIKYLN 312 (312)
Q Consensus 261 ISGa~qH--~~G~-~~s~~IvAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l~ 312 (312)
-.=.--. .... ...+ ||=|+.||.--- .-..|++|+||+.++|.+|+++++
T Consensus 275 ~rf~~~~~~~~~f~~~~~-ii~iDidp~ei~k~~~~~~~i~gD~~~~l~~L~~~l~ 329 (550)
T COG0028 275 ARFDDRVTGYSGFAPPAA-IIHIDIDPAEIGKNYPVDVPIVGDAKATLEALLEELK 329 (550)
T ss_pred CCCcccccchhhhCCcCC-EEEEeCChHHhCCCCCCCeeEeccHHHHHHHHHHhhh
Confidence 7311000 1111 1212 777777763211 123899999999999999998763
No 62
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=92.08 E-value=0.3 Score=49.63 Aligned_cols=115 Identities=10% Similarity=0.065 Sum_probs=72.5
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCCC--eEeccCCc----------eeCCceEEEE
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISNN--LQIGQTGK----------IVAPQLYIAI 259 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~~--~qIG~sG~----------~v~P~lYia~ 259 (312)
|.+|+ -++-+|.|+......+.+.+||+++|+-|..|--. .|.+|++ ..+|..|- .=..+|.|++
T Consensus 202 L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~g--kg~~~~~hpl~lG~~~g~~~~~~~~~~~~~aDlvl~l 279 (539)
T TIGR03393 202 LAMAKRVSLLADFLALRHGLKHALQKWVKEVPMPHATLLMG--KGILDEQQAGFYGTYSGSASTGAVKEAIEGADAVICV 279 (539)
T ss_pred HHhCCCCEEEeChhhcccChHHHHHHHHHHhCCCEEECccc--CccccCcCCCeEEEEeCCCCCHHHHHHHhhCCEEEEE
Confidence 45564 34445778865667889999999999988776543 4555544 46776531 1245999999
Q ss_pred eeccchhhhcc----cCCCcEEEEEcCCCCCC-cccccceEEeecHhHHHHHHHhhh
Q psy9406 260 GISGAIQHLSG----MKDSKIIVAINQDEDAP-IFDISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 260 GISGa~qH~~G----~~~s~~IvAIN~D~~Ap-If~~aDygiVgD~~~vlp~l~~~l 311 (312)
|-+=.--.+.+ +.. +.+|=||.|+..- -....|+.+ +|...+|.+|.+.+
T Consensus 280 G~~l~~~~~~~~~~~~~~-~~~I~id~~~~~~~~~~~~~~~i-~D~~~~l~~l~~~l 334 (539)
T TIGR03393 280 GVRFTDTITAGFTHQLTP-EQTIDVQPHAARVGNVWFTGIPM-NDAIETLVELCEHA 334 (539)
T ss_pred CCcccccccceeeccCCc-ccEEEEcCCeEEECceEeCCcCH-HHHHHHHHHHhhhc
Confidence 96411111111 222 3456677765431 122467887 99999999998865
No 63
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=90.64 E-value=0.36 Score=43.87 Aligned_cols=56 Identities=21% Similarity=0.234 Sum_probs=40.9
Q ss_pred CCceEEEEeeccchhhhccc----CCCcEEEEEcCCCCCCcc-cccceEEeecHhHHHHHH
Q psy9406 252 APQLYIAIGISGAIQHLSGM----KDSKIIVAINQDEDAPIF-DISDYGLVGDLFEIIPKF 307 (312)
Q Consensus 252 ~P~lYia~GISGa~qH~~G~----~~s~~IvAIN~D~~ApIf-~~aDygiVgD~~~vlp~l 307 (312)
+.+|.|.+|-|+++.-..++ +....+|.||.+|...-. +.+||-+-||..++||.|
T Consensus 175 ~aDlllvvGTSl~V~pa~~l~~~~~~~~~~v~iN~~~~~~~~~~~~d~~~~~~~~~~l~~~ 235 (235)
T cd01408 175 EADLLIVIGTSLKVAPFASLPSRVPSEVPRVLINREPVGHLGKRPFDVALLGDCDDGVREL 235 (235)
T ss_pred cCCEEEEECCCCeeccHHHHHHHHhCCCcEEEEeCCCCCCCCCCCcCEEEeCCHHHHHHhC
Confidence 47888889998888744332 222446679999855431 678999999999999976
No 64
>PLN02573 pyruvate decarboxylase
Probab=90.50 E-value=0.83 Score=46.95 Aligned_cols=114 Identities=21% Similarity=0.235 Sum_probs=73.4
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCCCe--EeccC-Cc--------e-eCCceEEEE
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISNNL--QIGQT-GK--------I-VAPQLYIAI 259 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~~~--qIG~s-G~--------~-v~P~lYia~ 259 (312)
|.+|+ -++-.|.|+...+..+.+.+||+++|+-|-.|=-. .|.+|.++ ..|.. |. . =..+|.|++
T Consensus 221 L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~~PV~tt~~g--kg~~pe~hpl~~G~~~G~~~~~~~~~~~~~aDlvl~l 298 (578)
T PLN02573 221 LNKAVKPVLVGGPKLRVAKACKAFVELADASGYPVAVMPSA--KGLVPEHHPHFIGTYWGAVSTPFCAEIVESADAYLFA 298 (578)
T ss_pred HHhCCCCEEEEChhhcccchHHHHHHHHHHhCCCEEECccc--CCCCCCcCCCceEEeeCCCCCHHHHHHHHhCCEEEEE
Confidence 34443 34446788876677889999999999988755332 47777654 67765 42 1 245999999
Q ss_pred eeccchhhhc----ccCCCcEEEEEcCCCCCCcccccceEEeecHhHHHHHHHhhh
Q psy9406 260 GISGAIQHLS----GMKDSKIIVAINQDEDAPIFDISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 260 GISGa~qH~~----G~~~s~~IvAIN~D~~ApIf~~aDygiVgD~~~vlp~l~~~l 311 (312)
|-+ =-++.. .......+|-||.|+.-. =+..+++++ |+..++.+|++.|
T Consensus 299 G~~-l~~~~~~~~~~~~~~~~~I~id~d~~~i-~~~~~~~~~-~~~~~l~~L~~~l 351 (578)
T PLN02573 299 GPI-FNDYSSVGYSLLLKKEKAIIVQPDRVTI-GNGPAFGCV-LMKDFLEALAKRV 351 (578)
T ss_pred CCc-cCCcccccccccCCCCcEEEEeCCEEEE-CCcceECCc-CHHHHHHHHHHHh
Confidence 953 100100 012234466788888642 222477877 8999999998876
No 65
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=90.40 E-value=0.48 Score=42.53 Aligned_cols=55 Identities=24% Similarity=0.550 Sum_probs=41.9
Q ss_pred CCceEEEEeeccchh------hhcccCCCcEEEEEcCCCCCCcccccceEEeecHhHHHHHHH
Q psy9406 252 APQLYIAIGISGAIQ------HLSGMKDSKIIVAINQDEDAPIFDISDYGLVGDLFEIIPKFI 308 (312)
Q Consensus 252 ~P~lYia~GISGa~q------H~~G~~~s~~IvAIN~D~~ApIf~~aDygiVgD~~~vlp~l~ 308 (312)
+.+|.|-+|-|+.++ +.+-.+++ .+|-||.+|. ++-+.+|+.|-||+.++||+|+
T Consensus 164 ~~dl~lvlGTsl~v~p~~~l~~~~~~~~~-~~i~iN~~~~-~~~~~~~~~i~g~~~~~l~~l~ 224 (224)
T cd01412 164 KADLFLVIGTSGVVYPAAGLPEEAKERGA-RVIEINPEPT-PLSPIADFAFRGKAGEVLPALL 224 (224)
T ss_pred cCCEEEEECcCccchhHHHHHHHHHHCCC-eEEEECCCCC-CCCCcCCEEEECCHHHHHHHhC
Confidence 578999999888776 22233444 4667999976 4558899999999999999873
No 66
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=90.21 E-value=0.58 Score=42.58 Aligned_cols=56 Identities=27% Similarity=0.437 Sum_probs=43.7
Q ss_pred ceEEEEeeccchhhhcc------cCCCcEEEEEcCCCCCCcccccceEEeecHhHHHHHHHhhh
Q psy9406 254 QLYIAIGISGAIQHLSG------MKDSKIIVAINQDEDAPIFDISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 254 ~lYia~GISGa~qH~~G------~~~s~~IvAIN~D~~ApIf~~aDygiVgD~~~vlp~l~~~l 311 (312)
+|.|.+|-|.++.-..- .+++ .+|.||.+|. ++-+.+|+.+-+|..++||.|.+.|
T Consensus 179 dl~lviGTsl~V~p~~~l~~~~~~~~~-~~i~iN~~~~-~~~~~~~~~i~~~~~~~l~~l~~~~ 240 (242)
T PRK00481 179 DLFIVIGTSLVVYPAAGLPYEAREHGA-KTVEINLEPT-PLDSLFDLVIHGKAGEVVPELVEEL 240 (242)
T ss_pred CEEEEECCCceEcCHhHHHHHHHHCCC-eEEEECCCCC-CCCCccCEEEECCHHHHHHHHHHHh
Confidence 88999999988743222 2333 4788999985 5666799999999999999998875
No 67
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=89.84 E-value=0.71 Score=42.20 Aligned_cols=58 Identities=21% Similarity=0.273 Sum_probs=43.8
Q ss_pred CceEEEEeeccchhhhccc-----CCCcEEEEEcCCCCCCcccccceEEeecHhHHHHHHHhhh
Q psy9406 253 PQLYIAIGISGAIQHLSGM-----KDSKIIVAINQDEDAPIFDISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 253 P~lYia~GISGa~qH~~G~-----~~s~~IvAIN~D~~ApIf~~aDygiVgD~~~vlp~l~~~l 311 (312)
.+|.|.+|-|.++.=...+ +....||-||.+|. |+=+.+|+-+.+|+-++||.|++.+
T Consensus 179 aDl~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN~~~t-~~d~~~~~~i~~~~~~~l~~l~~~~ 241 (244)
T PRK14138 179 ASLMIVMGSSLVVYPAAELPLITVRSGGKLVIVNLGET-PLDDIATLKYNMDVVEFANRVMSEG 241 (244)
T ss_pred CCEEEEeCcCCeeecHhHHHHHHHHcCCeEEEEcCCCC-CCCcceeEEEeCCHHHHHHHHHHHh
Confidence 5788888888887644443 12334677999854 4556789999999999999999876
No 68
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=89.52 E-value=0.94 Score=39.26 Aligned_cols=112 Identities=21% Similarity=0.239 Sum_probs=78.1
Q ss_pred EEEEeCccCCC-ccchHHHHHHHHHhCCeeeec----HhhHhcCCCCCCeEeccCCcee------------CCceEEEEe
Q psy9406 198 IVVAGGRGLGS-SKNFKILEGLADKLNAAIGAS----RAAVDAGYISNNLQIGQTGKIV------------APQLYIAIG 260 (312)
Q Consensus 198 vvV~~GrG~~~-~e~~~~~~~LA~~lga~vg~S----Rp~vd~gw~~~~~qIG~sG~~v------------~P~lYia~G 260 (312)
-++-+|.|+.. .+..+.+.+||+.+|.-+-.| +..++.|.+|...-+|..|... ..+|-|.+|
T Consensus 37 PlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~~~~~~~~kgv~~~~~~lg~lg~~~~~p~~e~~~g~~~~DlvlfvG 116 (171)
T PRK00945 37 PLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGGSYKGLIDKGVDAKYINLHELTNYLKDPNWKGLDGNGNYDLVIFIG 116 (171)
T ss_pred cEEEECcCccccchHHHHHHHHHHHHCCCEEEccccccccccCCccCCcccHHHHHhhccCchhhhhcCCCCcCEEEEec
Confidence 45556777776 778899999999999866554 4578889998877777777776 457888888
Q ss_pred ec--cchhhhcccCCCcEEEEEcCCCCCCcccccceEE----eecHhHHHHHHHhhh
Q psy9406 261 IS--GAIQHLSGMKDSKIIVAINQDEDAPIFDISDYGL----VGDLFEIIPKFIKYL 311 (312)
Q Consensus 261 IS--Ga~qH~~G~~~s~~IvAIN~D~~ApIf~~aDygi----VgD~~~vlp~l~~~l 311 (312)
++ =+-|-+++.|.---+..|.-|+.= -..|||-. -.|+++.|.+|++.|
T Consensus 117 ~~~~~~~~~l~~lk~f~~~~~~~~~~~y--~~~a~~s~~~~~~~~~~~~l~~li~~~ 171 (171)
T PRK00945 117 VTYYYASQGLSALKHFSPLKTITIDRYY--HPNADMSFPNLSKEEYLEYLDELIDNL 171 (171)
T ss_pred CCchhHHHHHHHHhhcCCceEEEecCCc--CCCCceecCCCCHHHHHHHHHHHHhhC
Confidence 73 345667777733225555555433 45778776 456788888887654
No 69
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=88.36 E-value=1 Score=41.19 Aligned_cols=59 Identities=20% Similarity=0.398 Sum_probs=44.7
Q ss_pred CCceEEEEeeccchhhhcccC-----CCcEEEEEcCCCCCCcccccceEEeecHhHHHHHHHhhh
Q psy9406 252 APQLYIAIGISGAIQHLSGMK-----DSKIIVAINQDEDAPIFDISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 252 ~P~lYia~GISGa~qH~~G~~-----~s~~IvAIN~D~~ApIf~~aDygiVgD~~~vlp~l~~~l 311 (312)
+.+|.|.+|-|+++.=.+.+- .-..||-||.+|.-.- ..+|+-+.++..++||+|.++|
T Consensus 172 ~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~~~~~-~~~~~~i~g~~~~~l~~l~~~~ 235 (242)
T PTZ00408 172 KTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEEGTNY-SQFDESIYGKASVIVPAWVDRV 235 (242)
T ss_pred hCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCCCCCC-ccCCEEEECCHHHHHHHHHHHH
Confidence 468999999999887443321 2234778999986555 3578999999999999998765
No 70
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=85.33 E-value=1.6 Score=37.47 Aligned_cols=110 Identities=22% Similarity=0.288 Sum_probs=73.5
Q ss_pred cEEEEeCccCCCccchHHHHHHHHHhCCeeee----cHhhHhcCCCCCCeEeccCCceeC------------CceEEEEe
Q psy9406 197 KIVVAGGRGLGSSKNFKILEGLADKLNAAIGA----SRAAVDAGYISNNLQIGQTGKIVA------------PQLYIAIG 260 (312)
Q Consensus 197 ~vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~----SRp~vd~gw~~~~~qIG~sG~~v~------------P~lYia~G 260 (312)
+-++-+|.|+...+..+.+++||+.+|.-+-. .||.+|.|-.++..-+|..|...+ .+|-|.+|
T Consensus 29 RPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~~~~~~~kgv~~~~~~lg~~g~~~~~p~~e~~~g~g~~DlvlfvG 108 (162)
T TIGR00315 29 RPLLIVGPENLEDEEKELIVKFIEKFDLPVVATADTYRALIEAGIESEEMNLHEITQFLADPSWEGFDGEGNYDLVLFLG 108 (162)
T ss_pred CcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCccccccccCCeecCCCCHHHHHHhccCchhhhccCCCCcCEEEEeC
Confidence 45566677777677889999999999976654 456689999888777777777554 47888888
Q ss_pred ecc--chhhhcccC-CCcEEEEEcCCCCCCcccccceEE----eecHhHHHHHHHh
Q psy9406 261 ISG--AIQHLSGMK-DSKIIVAINQDEDAPIFDISDYGL----VGDLFEIIPKFIK 309 (312)
Q Consensus 261 ISG--a~qH~~G~~-~s~~IvAIN~D~~ApIf~~aDygi----VgD~~~vlp~l~~ 309 (312)
+.= +.|-+++.| .| ++..|--|+-= -..|||-. -.++++.|.++++
T Consensus 109 ~~~y~~~~~ls~lk~f~-~~~~i~l~~~y--~pnA~~Sf~n~~~~~~~~~l~~~~~ 161 (162)
T TIGR00315 109 IIYYYLSQMLSSLKHFS-HIVTIAIDKYY--QPNADYSFPNLSKDEYLDYLRKLLA 161 (162)
T ss_pred CcchHHHHHHHHHHhhc-CcEEEEecCCC--CCCCceeccccCHHHHHHHHHHHhc
Confidence 843 356667777 44 44444444221 34788876 3445555555543
No 71
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=82.64 E-value=3.6 Score=47.62 Aligned_cols=111 Identities=11% Similarity=0.013 Sum_probs=69.1
Q ss_pred EEEEeCccCCCccchHHHHHHHHHhCCeeeecHhh-H----hcCCCCC--C--eEeccCCce---------eCCceEEEE
Q psy9406 198 IVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAA-V----DAGYISN--N--LQIGQTGKI---------VAPQLYIAI 259 (312)
Q Consensus 198 vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~-v----d~gw~~~--~--~qIG~sG~~---------v~P~lYia~ 259 (312)
-++-+|.|....+.. .+.+||+.||+-|-+|-.. . ..|.+|. + ..+|..|.. -.|++-|++
T Consensus 527 PvIvaG~G~~~~~a~-~~~~LAe~l~~PV~tt~~sg~~~~~~~g~ipe~~~~pl~~g~~g~~~~~~~~~~~~~aDlVl~i 605 (1655)
T PLN02980 527 GLLLIGAIHTEDDIW-AALLLAKHLMWPVVADILSGLRLRKLFKSFPEFELNILFVDHLDHALLSDSVRNWIQFDVVIQI 605 (1655)
T ss_pred cEEEEcCCCchHHHH-HHHHHHHhCCCeEEEeCCCCCCCCccccccccccccccccchHHHHhCchhhhccCCCCEEEEe
Confidence 344456676543333 3589999999988776432 1 1366665 2 356655531 279999999
Q ss_pred eeccchhhhccc-C--CCcEEEEEcCCCCCCc-ccccceEEeecHhHHHHHHHh
Q psy9406 260 GISGAIQHLSGM-K--DSKIIVAINQDEDAPI-FDISDYGLVGDLFEIIPKFIK 309 (312)
Q Consensus 260 GISGa~qH~~G~-~--~s~~IvAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~ 309 (312)
|-+=...++.+. . ....+|-||.||+--= ....|.+|++|+.+++..|.+
T Consensus 606 G~rl~s~~~t~~~~~~~~~~~I~ID~d~~~i~~~~~~~~~i~~D~~~~l~~L~~ 659 (1655)
T PLN02980 606 GSRITSKRVSQMLEKCFPFSYILVDKHPCRHDPSHLVTHRVQSNIVQFADCLLK 659 (1655)
T ss_pred CCccccHHHHHHHHhCCCCeEEEECCCCCccCCcccceEEEEeCHHHHHHHhhh
Confidence 954111222211 1 1234788999876421 344689999999999998865
No 72
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=81.60 E-value=5.2 Score=40.85 Aligned_cols=107 Identities=13% Similarity=0.056 Sum_probs=66.8
Q ss_pred CcEEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCCCe--EeccCC---------cee-CCceEEEEeecc
Q psy9406 196 AKIVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISNNL--QIGQTG---------KIV-APQLYIAIGISG 263 (312)
Q Consensus 196 A~vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~~~--qIG~sG---------~~v-~P~lYia~GISG 263 (312)
-+-++=.|.|..... +.+.+||+++|+-|-.|--. .|++|+++ .+|..| ..+ .+++-|++|-+=
T Consensus 222 krPvii~G~g~~~~~--~~l~~lae~~g~PV~tt~~~--~~~~~~~hp~~~G~~g~~~~~~~~~~~l~~aD~vl~vG~~l 297 (568)
T PRK07449 222 KRGVVIAGRLSAEEG--QAIAALAQLLGWPLLADPLS--PRNYAPLHPQPIPCYDLWLRNPKAAEELLQPDIVIQFGSPP 297 (568)
T ss_pred CCeEEEECCCChHHH--HHHHHHHHHCCCeEEEecCC--CCCCCCCCccccchHHHHhcCchhhhhcCCCCEEEEeCCCC
Confidence 345555566765433 88999999999988655433 35576543 566332 234 689999999641
Q ss_pred chhhhccc--CCCcEEEEEcCCCCCCc-ccccceEEeecHhHHHHH
Q psy9406 264 AIQHLSGM--KDSKIIVAINQDEDAPI-FDISDYGLVGDLFEIIPK 306 (312)
Q Consensus 264 a~qH~~G~--~~s~~IvAIN~D~~ApI-f~~aDygiVgD~~~vlp~ 306 (312)
....+.+. +..+.+|-||.|+...= ....|..|++|+.++|++
T Consensus 298 ~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~ 343 (568)
T PRK07449 298 TSKRLLQWLADCEPEYWVVDPGPGRLDPAHHATRRLTASVATWLEA 343 (568)
T ss_pred CchhHHHHHhcCCCCEEEECCCCCcCCCCCCceEEEEEcHHHHHHh
Confidence 11111111 11225667898886321 224689999999999986
No 73
>PRK12474 hypothetical protein; Provisional
Probab=80.39 E-value=5.3 Score=40.38 Aligned_cols=37 Identities=8% Similarity=-0.016 Sum_probs=26.9
Q ss_pred CCCCc-EEEEeCccCCCccchHHHHHHHHHhCCeeeec
Q psy9406 193 LTSAK-IVVAGGRGLGSSKNFKILEGLADKLNAAIGAS 229 (312)
Q Consensus 193 l~~A~-vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~S 229 (312)
|.+|+ -++-+|.|+......+.+.+||+.+|+-|-+|
T Consensus 198 L~~A~rPvil~G~g~~~~~a~~~l~~lae~~g~PV~~t 235 (518)
T PRK12474 198 LRNGKKSALLLRGSALRGAPLEAAGRIQAKTGVRLYCD 235 (518)
T ss_pred HHcCCCcEEEECCccchhhHHHHHHHHHHHHCCCEEEe
Confidence 45553 34445777766667889999999999988764
No 74
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=79.92 E-value=3.7 Score=38.32 Aligned_cols=57 Identities=11% Similarity=0.108 Sum_probs=39.8
Q ss_pred CceEEEEeeccchh------hhcccCCCcEEEEEcCCCCCCcccccceEEeecHhHHHHHHHhhh
Q psy9406 253 PQLYIAIGISGAIQ------HLSGMKDSKIIVAINQDEDAPIFDISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 253 P~lYia~GISGa~q------H~~G~~~s~~IvAIN~D~~ApIf~~aDygiVgD~~~vlp~l~~~l 311 (312)
-++.|.+|-|..+. .++--++. .+|.||.+| .+.=+.+|+.|-||..++||.|.+.|
T Consensus 215 ~DlllvvGTSl~V~p~~~~~~~a~~~g~-~~i~IN~~~-t~~~~~~~~~i~g~~~evL~~l~~~l 277 (285)
T PRK05333 215 ADAVLVVGSSLMVYSGYRFCVWAAQQGK-PIAALNLGR-TRADPLLTLKVEASCAQALAALVARL 277 (285)
T ss_pred CCEEEEECcCceecchhhhHHHHHHCCC-eEEEECCCC-CCCCcceeEEEeCCHHHHHHHHHHHh
Confidence 34555555555543 12222344 788899985 46666789999999999999998876
No 75
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=77.67 E-value=5.6 Score=40.47 Aligned_cols=110 Identities=11% Similarity=0.101 Sum_probs=70.6
Q ss_pred cEEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCCC--eEecc-CCc---------eeCCceEEEEeeccc
Q psy9406 197 KIVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISNN--LQIGQ-TGK---------IVAPQLYIAIGISGA 264 (312)
Q Consensus 197 ~vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~~--~qIG~-sG~---------~v~P~lYia~GISGa 264 (312)
+-++-+|.|+......+.+++||++||+-|-.|=-. .|.+|.+ ..+|. .|. .=..+|.|++|-+=.
T Consensus 203 rPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tT~~g--kg~~pe~hpl~~G~~~G~~~~~~~~~~l~~aDliL~iG~~l~ 280 (535)
T TIGR03394 203 SPVMMVCVEVRRYGLEAKVAELAQRLGVPVVTTFMG--RGLLADAPTPPLGTYLGVAGDAELSRLVEESDGLLLLGVILS 280 (535)
T ss_pred CCEEEEChhhcccCcHHHHHHHHHHhCCCEEEcccc--CcCCCCCCccccccccCCCCCHHHHHHHHhCCEEEEECCccc
Confidence 345557888876667889999999999988766443 5777765 35662 331 224599999996611
Q ss_pred hhhhc--c--cCCCcEEEEEcCCCCCCccc--ccceEEeecHhHHHHHHHhhh
Q psy9406 265 IQHLS--G--MKDSKIIVAINQDEDAPIFD--ISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 265 ~qH~~--G--~~~s~~IvAIN~D~~ApIf~--~aDygiVgD~~~vlp~l~~~l 311 (312)
-.... + ..+.+ +|=||.|+. .|-+ ..|.++ +|..+.|.+|++++
T Consensus 281 ~~~~~~~~~~~~~~~-~I~id~~~~-~~~~~~~~~~~i-~d~~~~L~~l~~~~ 330 (535)
T TIGR03394 281 DTNFAVSQRKIDLRR-TIHAFDRAV-TLGYHVYADIPL-AGLVDALLALLCGL 330 (535)
T ss_pred ccccccccccCCCCc-EEEEeCCEE-EECCeeECCccH-HHHHHHHHHhhhcc
Confidence 11111 1 12334 555777765 2332 468888 88999988887654
No 76
>PRK07586 hypothetical protein; Validated
Probab=75.78 E-value=8.6 Score=38.70 Aligned_cols=36 Identities=17% Similarity=0.076 Sum_probs=27.8
Q ss_pred CCC-cEEEEeCccCCCccchHHHHHHHHHhCCeeeec
Q psy9406 194 TSA-KIVVAGGRGLGSSKNFKILEGLADKLNAAIGAS 229 (312)
Q Consensus 194 ~~A-~vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~S 229 (312)
.+| +-++-+|.|+...+..+.+.+||+.||+-|-+|
T Consensus 195 ~~A~rPvi~~G~g~~~~~a~~~l~~lae~l~~pV~t~ 231 (514)
T PRK07586 195 RSGEPTVLLLGGRALRERGLAAAARIAAATGARLLAE 231 (514)
T ss_pred HhcCCCEEEeCCcccchhHHHHHHHHHHHHCCCEEec
Confidence 444 356667788876777889999999999988653
No 77
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=72.80 E-value=6.8 Score=36.42 Aligned_cols=57 Identities=25% Similarity=0.359 Sum_probs=41.8
Q ss_pred CceEEEEeeccchhhhcccC-----CCcEEEEEcCCCCCCcc-cccceEEeecHhHHHHHHHhhh
Q psy9406 253 PQLYIAIGISGAIQHLSGMK-----DSKIIVAINQDEDAPIF-DISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 253 P~lYia~GISGa~qH~~G~~-----~s~~IvAIN~D~~ApIf-~~aDygiVgD~~~vlp~l~~~l 311 (312)
.++.|.+|-|+.++-.+++- .-..||-||.+|. |.- ..+|+-|-+++-++++ +.+.|
T Consensus 200 aDlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~t-~~~~~~~d~~i~~~~~~~~~-~~~~~ 262 (271)
T PTZ00409 200 CDLLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNISKT-YITNRISDYHVRAKFSELAQ-ISDIL 262 (271)
T ss_pred CCEEEEECCCCcccCHHHHHHHHHHcCCCEEEECCCCC-CCCCccccEEEECcHHHHHH-HHHHh
Confidence 57889999999887544432 2234778999987 443 4689999999999996 43554
No 78
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=71.57 E-value=18 Score=32.82 Aligned_cols=55 Identities=13% Similarity=0.136 Sum_probs=37.1
Q ss_pred EEEEEeCCCccChHHHHHHHHHHhcCCcEEEEEEcC-CchHHHHHHhhcCCccEEEEe
Q psy9406 4 LVIAEHDNSYLKTSTLNTITAATLCSDEIHILIIGY-NIEKVILDAKKVNNIKKILLV 60 (312)
Q Consensus 4 lv~~E~~~g~l~~~slEll~~A~~Lg~~V~av~~G~-~~~~~a~~~~~~~Gad~V~~~ 60 (312)
++|+|.-.|...+++-+++...+++. +...++-|. .+.+.++++.+ +|||-|++=
T Consensus 156 ~iYLEaGSGa~~~v~~~v~~~~~~~~-~~~LivGGGIrs~e~A~~~~~-aGAD~IVvG 211 (230)
T PF01884_consen 156 IIYLEAGSGAYGPVPEEVIAAVKKLS-DIPLIVGGGIRSPEQAREMAE-AGADTIVVG 211 (230)
T ss_dssp EEEEE--TTSSS-HHHHHHHHHHHSS-SSEEEEESS--SHHHHHHHHC-TTSSEEEES
T ss_pred EEEEEeCCCCCCCccHHHHHHHHhcC-CccEEEeCCcCCHHHHHHHHH-CCCCEEEEC
Confidence 79999988899999888888888885 444444443 23556667776 899977653
No 79
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=71.39 E-value=51 Score=29.82 Aligned_cols=93 Identities=13% Similarity=0.146 Sum_probs=58.5
Q ss_pred CCEEEEEEeCCCccChHHHHHHHHHHhcCCcEEEEEEcCC--------------chHHHHHHhhcCCccEEEEecCC-CC
Q psy9406 1 MPALVIAEHDNSYLKTSTLNTITAATLCSDEIHILIIGYN--------------IEKVILDAKKVNNIKKILLVDSL-YF 65 (312)
Q Consensus 1 m~ilv~~E~~~g~l~~~slEll~~A~~Lg~~V~av~~G~~--------------~~~~a~~~~~~~Gad~V~~~~~~-~l 65 (312)
|++|++.=|.+.+-.-.. -.|..-.+-|.+|.++.+-.+ .+..+.++++..|+++++.++.+ .+
T Consensus 11 ~~vL~v~aHPDDe~~g~g-gtla~~~~~G~~V~v~~lT~Ge~g~~~~~~~l~~~R~~E~~~a~~~LGv~~~~~l~~~~~~ 89 (237)
T COG2120 11 LRVLVVFAHPDDEEIGCG-GTLAKLAARGVEVTVVCLTLGEAGENGGELELGAVRRAEARAAARVLGVRETIFLGFPDTG 89 (237)
T ss_pred CcEEEEecCCcchhhccH-HHHHHHHHCCCeEEEEEccCCcccccCCccchHHHHHHHHHHHHHhcCCCcceecCCCccc
Confidence 458888888775421111 111111111456655544321 11233455566899999999887 67
Q ss_pred CCCCHHHHHHHHHHHHh--CCcEEEEcCCCC
Q psy9406 66 SNNLPENIAAQISVIAS--NYSHILAPATIY 94 (312)
Q Consensus 66 ~~~~~e~~a~~l~~l~~--~~~~IL~~aT~~ 94 (312)
..+..+.....|.++++ +|+.|+.+....
T Consensus 90 ~~~~~~~~~~~L~~ii~~~~P~~V~t~~~~d 120 (237)
T COG2120 90 ADADPEEITGALVAIIRRLRPDVVFTPYPDD 120 (237)
T ss_pred cccChHHHHHHHHHHHHHhCCCEEEecCCCC
Confidence 77889999999999876 688888888777
No 80
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=65.19 E-value=20 Score=32.36 Aligned_cols=55 Identities=7% Similarity=0.090 Sum_probs=39.5
Q ss_pred EEEEEeCCCccChHHHHHHHHHHhcCCcEEEEEEcCC--chHHHHHHhhcCCccEEEEe
Q psy9406 4 LVIAEHDNSYLKTSTLNTITAATLCSDEIHILIIGYN--IEKVILDAKKVNNIKKILLV 60 (312)
Q Consensus 4 lv~~E~~~g~l~~~slEll~~A~~Lg~~V~av~~G~~--~~~~a~~~~~~~Gad~V~~~ 60 (312)
+||+|..+|.=.+...|++...++.-+++... +|.+ ..+.++++.+ .|+|+|++-
T Consensus 152 ~vYlE~gs~~g~~v~~e~i~~v~~~~~~~pl~-vGGGIrs~e~a~~l~~-aGAD~VVVG 208 (223)
T TIGR01768 152 IIYLEAGSGAPEPVPPELVAEVKKVLDKARLF-VGGGIRSVEKAREMAE-AGADTIVTG 208 (223)
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHcCCCCEE-EecCCCCHHHHHHHHH-cCCCEEEEC
Confidence 89999988887888889999988764233333 3443 4556677776 699998874
No 81
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=64.51 E-value=4.7 Score=37.09 Aligned_cols=58 Identities=29% Similarity=0.405 Sum_probs=43.2
Q ss_pred CceEEEEeeccchhhhcc------cCCCcEEEEEcCCCCCCcccccceEEeecHhHHHHHHHhhhC
Q psy9406 253 PQLYIAIGISGAIQHLSG------MKDSKIIVAINQDEDAPIFDISDYGLVGDLFEIIPKFIKYLN 312 (312)
Q Consensus 253 P~lYia~GISGa~qH~~G------~~~s~~IvAIN~D~~ApIf~~aDygiVgD~~~vlp~l~~~l~ 312 (312)
.++.|.+|-||.+.=.++ -++++ +|-||. +.-++-..+|+-+.+++.+++|.|.+.++
T Consensus 183 ~d~liviGTSl~V~Paa~~p~~~~~~g~~-~i~iN~-~~~~~~~~~d~~i~~~a~~~~~~l~~~~~ 246 (250)
T COG0846 183 ADLLIVIGTSLKVYPAAGLPELAKRRGAK-VIEINL-EPTRLDPIADEVIRGDAGEVLPLLLEELL 246 (250)
T ss_pred CCEEEEECcceEEcChhhhhHHHHhcCCE-EEEECC-CcccCcchhHHHHHhhHHHHHHHHHHHhh
Confidence 566777777776653333 33333 667999 55688889999999999999999998763
No 82
>PRK13670 hypothetical protein; Provisional
Probab=64.47 E-value=96 Score=30.40 Aligned_cols=102 Identities=15% Similarity=0.115 Sum_probs=66.4
Q ss_pred CC-EEEEEEeCCCccChHHHHHHHHHHhcC--CcEEEEEEcC----C-----c-hHHHHHHhhcCCccEEEEecCCCCCC
Q psy9406 1 MP-ALVIAEHDNSYLKTSTLNTITAATLCS--DEIHILIIGY----N-----I-EKVILDAKKVNNIKKILLVDSLYFSN 67 (312)
Q Consensus 1 m~-ilv~~E~~~g~l~~~slEll~~A~~Lg--~~V~av~~G~----~-----~-~~~a~~~~~~~Gad~V~~~~~~~l~~ 67 (312)
|+ +=+++|.++ ++.-=..+|..++++. +-+.+|+-|. + . ..-+ +++..+|+|-|+.+.-. |..
T Consensus 1 Mk~~GIIaEfdg--~H~GH~~~i~~a~~~a~~~~~~~Vmp~~f~qrg~p~i~~~~~R~-~~a~~~GvD~vielpf~-~a~ 76 (388)
T PRK13670 1 MKVTGIIVEYNP--FHNGHLYHLNQAKKLTNADVTIAVMSGNFVQRGEPAIVDKWTRA-KMALENGVDLVVELPFL-YSV 76 (388)
T ss_pred CceeEEEeeeCC--cCHHHHHHHHHHHHHHhCCCcEEEecHHHhCCCCCCCCCHHHHH-HHHHHcCCCEEEEeCCc-hHh
Confidence 76 579999763 5666677888888874 3344554443 1 1 1223 33334899999999876 888
Q ss_pred CCHHHHHHH---HHHHHhCCcEEEEcCCCCcccHHHHHHHHcC
Q psy9406 68 NLPENIAAQ---ISVIASNYSHILAPATIYGKNILPRVAALLN 107 (312)
Q Consensus 68 ~~~e~~a~~---l~~l~~~~~~IL~~aT~~GrdLaprlAarL~ 107 (312)
..++.+++. +.+.. +.+.|.||...-.-+...+++..+.
T Consensus 77 ~sae~F~~~aV~iL~~l-~v~~lv~G~e~g~~~~L~~~~~~l~ 118 (388)
T PRK13670 77 QSADFFAEGAVSILDAL-GVDSLVFGSESGDIEDFQKIAKILN 118 (388)
T ss_pred CCHHHHHHhHHHHHHHc-CCCEEEEcCCCCCHHHHHHHHHHHH
Confidence 899999885 22222 4789999998444455555554443
No 83
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=64.06 E-value=1.4e+02 Score=28.59 Aligned_cols=88 Identities=11% Similarity=0.066 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHhcCCcEEEEEEcCC---ch---HHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHHHhC--C--c
Q psy9406 16 TSTLNTITAATLCSDEIHILIIGYN---IE---KVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVIASN--Y--S 85 (312)
Q Consensus 16 ~~slEll~~A~~Lg~~V~av~~G~~---~~---~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l~~~--~--~ 85 (312)
+.+.+.+..||++|-++.+.++-.. .+ +.++.+.. +|+|.||++|.- ....|+.+.+.+..+.+. + .
T Consensus 114 d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~-~Ga~~i~i~DT~--G~~~P~~v~~~v~~l~~~l~~~i~ 190 (333)
T TIGR03217 114 DVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMES-YGADCVYIVDSA--GAMLPDDVRDRVRALKAVLKPETQ 190 (333)
T ss_pred HHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHh-cCCCEEEEccCC--CCCCHHHHHHHHHHHHHhCCCCce
Confidence 5678999999999977766554332 13 23344444 899999999874 556788888888877553 2 2
Q ss_pred EEEEcCCCCcccHHHHHHHHc
Q psy9406 86 HILAPATIYGKNILPRVAALL 106 (312)
Q Consensus 86 ~IL~~aT~~GrdLaprlAarL 106 (312)
+=+=.+...|-.+|--+++--
T Consensus 191 ig~H~HnnlGla~ANslaAi~ 211 (333)
T TIGR03217 191 VGFHAHHNLSLAVANSIAAIE 211 (333)
T ss_pred EEEEeCCCCchHHHHHHHHHH
Confidence 555588999999999887753
No 84
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=63.22 E-value=37 Score=26.01 Aligned_cols=73 Identities=12% Similarity=-0.006 Sum_probs=45.2
Q ss_pred EEEEcC--CchHHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHHHhCCcEEEEcCCCCcc---cHHHHHHHHcCC
Q psy9406 34 ILIIGY--NIEKVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVIASNYSHILAPATIYGK---NILPRVAALLNV 108 (312)
Q Consensus 34 av~~G~--~~~~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l~~~~~~IL~~aT~~Gr---dLaprlAarL~~ 108 (312)
++++|. ......++....+|...+++-.+.... .....+.+.++++|+|++.-...+. ..+-+.|.+.+.
T Consensus 2 vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~-----~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~i 76 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDE-----KKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGI 76 (97)
T ss_pred EEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCc-----cchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCC
Confidence 566776 334444455555898877771111111 1233456666788988888877764 566777888888
Q ss_pred cee
Q psy9406 109 MQI 111 (312)
Q Consensus 109 ~lv 111 (312)
|++
T Consensus 77 p~~ 79 (97)
T PF10087_consen 77 PII 79 (97)
T ss_pred cEE
Confidence 876
No 85
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=60.09 E-value=1.3e+02 Score=29.13 Aligned_cols=85 Identities=14% Similarity=0.137 Sum_probs=58.9
Q ss_pred HHHHHHHHhcCCcEEEEE---EcCC---------chHHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHHHhCC--
Q psy9406 19 LNTITAATLCSDEIHILI---IGYN---------IEKVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVIASNY-- 84 (312)
Q Consensus 19 lEll~~A~~Lg~~V~av~---~G~~---------~~~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l~~~~-- 84 (312)
.+++..|++.|.+|.+.+ +|.. ..+.++++.. .|+|+|.+.|.-. ...|....+.+..+.+.+
T Consensus 165 ~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~-~Gad~I~l~DT~G--~a~P~~v~~lv~~l~~~~~~ 241 (347)
T PLN02746 165 REVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYD-MGCYEISLGDTIG--VGTPGTVVPMLEAVMAVVPV 241 (347)
T ss_pred HHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHH-cCCCEEEecCCcC--CcCHHHHHHHHHHHHHhCCC
Confidence 357777888887765433 4421 1244566665 7999999998753 446888888888876643
Q ss_pred -cEEEEcCCCCcccHHHHHHHHc
Q psy9406 85 -SHILAPATIYGKNILPRVAALL 106 (312)
Q Consensus 85 -~~IL~~aT~~GrdLaprlAarL 106 (312)
.+-+=.+..+|..+|--+|+-.
T Consensus 242 ~~i~~H~Hnd~GlA~AN~lAA~~ 264 (347)
T PLN02746 242 DKLAVHFHDTYGQALANILVSLQ 264 (347)
T ss_pred CeEEEEECCCCChHHHHHHHHHH
Confidence 2445588999999999997743
No 86
>TIGR01718 Uridine-psphlse uridine phosphorylase. Sequences from Clostridium, Streptomyces, Treponema, Halobacterium and Pyrobaculum were included above trusted on the basis of sequence homology and a PAM-based neighbor-joining tree. A clade including second sequences from Halobacterium and Vibrio was somewhat more distantly related and may represent a slightly different substrate specificity - these were placed below the noise cutoff. More distantly related is a clade of archaeal sequences which as related to the DeoD family of inosine phosphorylases (TIGR00107) as they are to these uridine phosphorylases. This clade includes a characterized protein from Sulfolobus solfataricus which has been mis-named as a methylthioadenosine phosphorylase, but which acts on inosine and guanosine - it is unclear whether uridine has been evaluated as a substrate.
Probab=59.52 E-value=28 Score=31.63 Aligned_cols=55 Identities=22% Similarity=0.471 Sum_probs=36.3
Q ss_pred CceEEEEeeccchhhhcccCCCcEEE---EEcCCCCCCcccccceEEeecHhHHHHHHHhh
Q psy9406 253 PQLYIAIGISGAIQHLSGMKDSKIIV---AINQDEDAPIFDISDYGLVGDLFEIIPKFIKY 310 (312)
Q Consensus 253 P~lYia~GISGa~qH~~G~~~s~~Iv---AIN~D~~ApIf~~aDygiVgD~~~vlp~l~~~ 310 (312)
|+..|-+|.+|++|-- ++--++|| |++.|-...-+.-..|-.+.| +++...|.+.
T Consensus 79 ~~~iIr~GtaG~l~~~--~~~GDiVI~~~a~~~Dg~~~~y~~~~~p~~~d-~~l~~~l~~~ 136 (245)
T TIGR01718 79 ARTFIRVGTTGAIQPH--INVGDVLITTAAVRLDGASLHYAPLEFPAVAD-FEVTTALVEA 136 (245)
T ss_pred CCEEEEeeccccCCCC--CCCCCEEEeCceecCCCcccccCCCCcCCCCC-HHHHHHHHHH
Confidence 7899999999999865 55556666 467776655554444444555 5555555544
No 87
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=58.84 E-value=1.4e+02 Score=26.80 Aligned_cols=88 Identities=18% Similarity=0.128 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHhcCCcEEEEEEcCCc--------hHHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHHHhCC---
Q psy9406 16 TSTLNTITAATLCSDEIHILIIGYNI--------EKVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVIASNY--- 84 (312)
Q Consensus 16 ~~slEll~~A~~Lg~~V~av~~G~~~--------~~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l~~~~--- 84 (312)
+...+.+..+++.|-++..-+..... .+.++.+.+ +|+|.+++.|.- ....|+.+.+.+..+.+..
T Consensus 115 ~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~-~g~~~i~l~Dt~--G~~~P~~v~~li~~l~~~~~~~ 191 (265)
T cd03174 115 ENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEE-AGADEISLKDTV--GLATPEEVAELVKALREALPDV 191 (265)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHH-cCCCEEEechhc--CCcCHHHHHHHHHHHHHhCCCC
Confidence 34556677788888766655532222 445666665 899999998774 4567888888888886633
Q ss_pred cEEEEcCCCCcccHHHHHHHHc
Q psy9406 85 SHILAPATIYGKNILPRVAALL 106 (312)
Q Consensus 85 ~~IL~~aT~~GrdLaprlAarL 106 (312)
.+-+=.+...|-.++--+++-.
T Consensus 192 ~~~~H~Hn~~gla~an~laA~~ 213 (265)
T cd03174 192 PLGLHTHNTLGLAVANSLAALE 213 (265)
T ss_pred eEEEEeCCCCChHHHHHHHHHH
Confidence 3444477888998888888753
No 88
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=55.05 E-value=1.3e+02 Score=25.52 Aligned_cols=90 Identities=8% Similarity=0.046 Sum_probs=52.7
Q ss_pred cChHHHHHHHHHHhcCCcEEEEEEcCCchHHHHHHhhcCCc----cEEEEecCCCCCCCCHHHHHHHHHHHHhCC-cEEE
Q psy9406 14 LKTSTLNTITAATLCSDEIHILIIGYNIEKVILDAKKVNNI----KKILLVDSLYFSNNLPENIAAQISVIASNY-SHIL 88 (312)
Q Consensus 14 l~~~slEll~~A~~Lg~~V~av~~G~~~~~~a~~~~~~~Ga----d~V~~~~~~~l~~~~~e~~a~~l~~l~~~~-~~IL 88 (312)
+.|-..++|...++.|-.+ .++.+......+...+..|. |.++..++-......++.|..++.++--+| ++++
T Consensus 93 ~~~~~~~~L~~L~~~g~~~--~i~Sn~~~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~~~ 170 (198)
T TIGR01428 93 PHPDVPAGLRALKERGYRL--AILSNGSPAMLKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALEALGVPPDEVLF 170 (198)
T ss_pred CCCCHHHHHHHHHHCCCeE--EEEeCCCHHHHHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHHHhCCChhhEEE
Confidence 4566677787777665333 33433333333333333564 566666654455667888888887774344 5888
Q ss_pred EcCCCCcccHHHHHHHHcCCc
Q psy9406 89 APATIYGKNILPRVAALLNVM 109 (312)
Q Consensus 89 ~~aT~~GrdLaprlAarL~~~ 109 (312)
++.+. .|+.+ |.+.|..
T Consensus 171 vgD~~--~Di~~--A~~~G~~ 187 (198)
T TIGR01428 171 VASNP--WDLGG--AKKFGFK 187 (198)
T ss_pred EeCCH--HHHHH--HHHCCCc
Confidence 88887 45555 3444443
No 89
>smart00664 DoH Possible catecholamine-binding domain present in a variety of eukaryotic proteins. A predominantly beta-sheet domain present as a regulatory N-terminal domain in dopamine beta-hydroxylase, mono-oxygenase X and SDR2. Its function remains unknown at present (Ponting, Human Molecular Genetics, in press).
Probab=55.05 E-value=14 Score=30.41 Aligned_cols=41 Identities=20% Similarity=0.350 Sum_probs=33.0
Q ss_pred CeEeccCCceeCCceEEEEeeccchhhhcccCCCcEEEEEcCCCCC
Q psy9406 241 NLQIGQTGKIVAPQLYIAIGISGAIQHLSGMKDSKIIVAINQDEDA 286 (312)
Q Consensus 241 ~~qIG~sG~~v~P~lYia~GISGa~qH~~G~~~s~~IvAIN~D~~A 286 (312)
+-++..++++.+ +=|+|+|+|-- .+|.+++.||+...+...
T Consensus 15 ~v~~~l~~~~~~-~gwvaiGfs~~----~~M~~~d~vv~~~~~~g~ 55 (148)
T smart00664 15 SIAFELSGPTST-NGWVAIGFSPD----GQMAGADVVVAWVDNNGR 55 (148)
T ss_pred eEEEEEEEecCC-CCEEEEEECCC----CCcCCCCEEEEEEcCCCC
Confidence 456777888777 77999999875 889999999998876443
No 90
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=54.01 E-value=1.1e+02 Score=24.32 Aligned_cols=49 Identities=10% Similarity=0.105 Sum_probs=31.3
Q ss_pred HHhhcCCccEEEEecCCCCCCCC--HHHHHHHHHHHHh--CCcEEEEcCCCCc
Q psy9406 47 DAKKVNNIKKILLVDSLYFSNNL--PENIAAQISVIAS--NYSHILAPATIYG 95 (312)
Q Consensus 47 ~~~~~~Gad~V~~~~~~~l~~~~--~e~~a~~l~~l~~--~~~~IL~~aT~~G 95 (312)
++.+..|+++++.++-+...... .+...+.|.++++ +|+.|+.+....+
T Consensus 60 ~a~~~lGv~~~~~l~~~D~~~~~~~~~~~~~~l~~~i~~~~p~~V~t~~~~~~ 112 (128)
T PF02585_consen 60 AAAEILGVENVIFLDFPDGQLPGWSWEELVRDLEDLIREFRPDVVFTPDPDDG 112 (128)
T ss_dssp HHHHHCT-EEEEEEEECTTSCTCHHHHHHHHHHHHHHHHH-ESEEEEE-STTS
T ss_pred HHHHHcCCceEEEeecCCCCcccccHHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 34445899888888765443333 6777777887776 5799988875544
No 91
>PF03351 DOMON: DOMON domain; InterPro: IPR005018 The DOMON domain is an 110-125 residue long domain which has been identified in the physiologically important enzyme dopamine beta-monooxygenase and in several other secreted and transmembrane proteins from both plants and animals. It has been named after DOpamine beta-MOnooxygenase N-terminal domain. The DOMON domain can be found in one to four copies and in association with other domains, such as the Cu-ascorbate dependent monooxygenase domain, the epidermal growth factor domain, the trypsin inhibitor-like domain (TIL), the SEA domain and the Reelin domain. The architectures of the DOMON domain proteins strongly suggest a function in extracellular adhesion []. The sequence conservation is predominantly centred around patches of hydrophobic residues. The secondary structure prediction of the DOMON domain points to an all-beta-strand fold with seven or eight core strands supported by a buried core of conserved hydrophobic residues. There is a chraracteristic motif with two small positions (Gly or Ser) corresponding to a conserved turn immediately C-terminal to strand three. It has been proposed that the DOMON domain might form a beta-sandwich structure, with the strands distributed into two beta sheets as is seen in many extracellular adhesion domains such as the immunoglobulin, fibronectin type III, cadherin and PKD domains [].
Probab=51.58 E-value=17 Score=28.66 Aligned_cols=36 Identities=31% Similarity=0.431 Sum_probs=28.0
Q ss_pred EeccCCceeCCceEEEEeeccchhhhcccCCCcEEEEEcCC
Q psy9406 243 QIGQTGKIVAPQLYIAIGISGAIQHLSGMKDSKIIVAINQD 283 (312)
Q Consensus 243 qIG~sG~~v~P~lYia~GISGa~qH~~G~~~s~~IvAIN~D 283 (312)
++..+|+.- ..=|+|+|.|. -.+|.+++.|+..+.|
T Consensus 19 ~~~l~~~~~-~~~w~aiGfs~----~~~M~~~Dvv~~~~~~ 54 (124)
T PF03351_consen 19 EFELTGPAN-TNGWVAIGFSD----DGGMGGSDVVVCWVDD 54 (124)
T ss_pred EEEEEeccC-CCCEEEEEEcc----ccCCCCCcEEEEEEcC
Confidence 445555444 37899999999 5679999999998886
No 92
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=50.02 E-value=2.4e+02 Score=26.99 Aligned_cols=88 Identities=14% Similarity=0.086 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHhcCCcEEEEEEcCC---ch---HHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHHHhC--Cc--
Q psy9406 16 TSTLNTITAATLCSDEIHILIIGYN---IE---KVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVIASN--YS-- 85 (312)
Q Consensus 16 ~~slEll~~A~~Lg~~V~av~~G~~---~~---~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l~~~--~~-- 85 (312)
+...+.+..||++|-++.+.+.-.. .+ +.++.+.. +|+|.++++|.- ....|+...+.+..+.+. ++
T Consensus 115 ~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~-~Ga~~i~i~DT~--G~~~P~~v~~~v~~l~~~l~~~i~ 191 (337)
T PRK08195 115 DVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMES-YGAQCVYVVDSA--GALLPEDVRDRVRALRAALKPDTQ 191 (337)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHh-CCCCEEEeCCCC--CCCCHHHHHHHHHHHHHhcCCCCe
Confidence 5688999999999977766444322 23 23344444 899999999874 566788888888887654 23
Q ss_pred EEEEcCCCCcccHHHHHHHHc
Q psy9406 86 HILAPATIYGKNILPRVAALL 106 (312)
Q Consensus 86 ~IL~~aT~~GrdLaprlAarL 106 (312)
+=+=.+...|-.+|--+++-.
T Consensus 192 ig~H~HnnlGla~ANslaAi~ 212 (337)
T PRK08195 192 VGFHGHNNLGLGVANSLAAVE 212 (337)
T ss_pred EEEEeCCCcchHHHHHHHHHH
Confidence 444477889999999887753
No 93
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=46.91 E-value=3.2e+02 Score=27.58 Aligned_cols=99 Identities=14% Similarity=0.096 Sum_probs=65.4
Q ss_pred CEEEEEEeCCCccChHHHHHHHHHHhcCCcEEEEEEc--CC------chHHHHHHhhcCCccEEEEecCCCCCCCCHHHH
Q psy9406 2 PALVIAEHDNSYLKTSTLNTITAATLCSDEIHILIIG--YN------IEKVILDAKKVNNIKKILLVDSLYFSNNLPENI 73 (312)
Q Consensus 2 ~ilv~~E~~~g~l~~~slEll~~A~~Lg~~V~av~~G--~~------~~~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~ 73 (312)
.++-+.++-|. -+...+.+..+++.|..+.+.+.- +. -.+.++++.+ +|+|.+++.|.- ....|+..
T Consensus 120 di~Rifd~lnd--~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~-~Gad~I~IkDta--G~l~P~~v 194 (468)
T PRK12581 120 DVFRIFDALND--PRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVE-MGADSICIKDMA--GILTPKAA 194 (468)
T ss_pred CEEEEcccCCC--HHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHH-cCCCEEEECCCC--CCcCHHHH
Confidence 34445554431 246778888999998654432221 22 1245667765 899999998875 34568888
Q ss_pred HHHHHHHHhCCc--EEEEcCCCCcccHHHHHHHH
Q psy9406 74 AAQISVIASNYS--HILAPATIYGKNILPRVAAL 105 (312)
Q Consensus 74 a~~l~~l~~~~~--~IL~~aT~~GrdLaprlAar 105 (312)
.+.+..+.+.++ +=+=.+.+.|..++--+++-
T Consensus 195 ~~Lv~alk~~~~~pi~~H~Hnt~GlA~An~laAi 228 (468)
T PRK12581 195 KELVSGIKAMTNLPLIVHTHATSGISQMTYLAAV 228 (468)
T ss_pred HHHHHHHHhccCCeEEEEeCCCCccHHHHHHHHH
Confidence 888888765444 44557788999999998765
No 94
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=44.40 E-value=28 Score=32.57 Aligned_cols=36 Identities=22% Similarity=0.286 Sum_probs=30.9
Q ss_pred CCEEEEEEeCCCccChHHHHHHHHHHhcC-CcEEEEEEcCC
Q psy9406 1 MPALVIAEHDNSYLKTSTLNTITAATLCS-DEIHILIIGYN 40 (312)
Q Consensus 1 m~ilv~~E~~~g~l~~~slEll~~A~~Lg-~~V~av~~G~~ 40 (312)
||||+++|.+-|. +.+.++.|.+|- ++.++.+++.+
T Consensus 1 ~ki~aisD~RtGn----t~QaiaLa~~l~r~eyttk~l~~~ 37 (329)
T COG3660 1 MKIWAISDGRTGN----THQAIALAEQLTRSEYTTKLLEYN 37 (329)
T ss_pred CceEEeecCCCcc----HHHHHHHHHHhhccceEEEEeecc
Confidence 8999999988775 459999999996 68999999876
No 95
>PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=44.05 E-value=1.7e+02 Score=23.99 Aligned_cols=86 Identities=19% Similarity=0.178 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHhcCCcEEEEEEcCCchHHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHHHhCCcEEEEcCCCCc
Q psy9406 16 TSTLNTITAATLCSDEIHILIIGYNIEKVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVIASNYSHILAPATIYG 95 (312)
Q Consensus 16 ~~slEll~~A~~Lg~~V~av~~G~~~~~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l~~~~~~IL~~aT~~G 95 (312)
-.+|+++-.|++-|-.-.+ +.-.+.+..-.+ ..=+|+++++++ |.....+...+-|. +-+.|++|+.++-
T Consensus 7 HSALqIl~GAk~EGFrT~~-ic~~~r~~~Y~~---f~~iDe~i~~d~--f~di~~~~~q~~L~----~~N~I~VPhgSfv 76 (124)
T PF06849_consen 7 HSALQILDGAKDEGFRTIA-ICQKGREKFYRR---FPFIDEVIVLDS--FSDILSEEVQEKLR----EMNAIFVPHGSFV 76 (124)
T ss_dssp TTHHHHHHHHHHTT--EEE-EEETTCHHHHHT---TTT-SEEEEESS--CGHCCSHHHHHHHH----HTTEEE--BTTHH
T ss_pred hHHHHHhhhHHHcCCcEEE-EECCCCcchhhh---cCcCcEEEEeCC--HHHHHhHHHHHHHH----HCCeEEecCCCee
Confidence 3589999999999854333 333344443322 235899999975 55555555555444 3478999998876
Q ss_pred ccHHHHHHHH-cCCcee
Q psy9406 96 KNILPRVAAL-LNVMQI 111 (312)
Q Consensus 96 rdLaprlAar-L~~~lv 111 (312)
--++..-... +..|+.
T Consensus 77 ~Y~G~d~ie~~~~vP~F 93 (124)
T PF06849_consen 77 AYVGYDRIENEFKVPIF 93 (124)
T ss_dssp HHH-HHHHHHT-SS-EE
T ss_pred EeecHHHHhhcCCCCee
Confidence 5555544444 555554
No 96
>COG2222 AgaS Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]
Probab=43.33 E-value=44 Score=32.16 Aligned_cols=95 Identities=19% Similarity=0.199 Sum_probs=61.9
Q ss_pred CcEEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCCCeEeccCCceeCCc-eEEEEeeccchhh------h
Q psy9406 196 AKIVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISNNLQIGQTGKIVAPQ-LYIAIGISGAIQH------L 268 (312)
Q Consensus 196 A~vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~~~qIG~sG~~v~P~-lYia~GISGa~qH------~ 268 (312)
.+.|+=+|+| ++---...+..|.+.-.+.. -.+++.+.++...=+-...+ |+|++.-||...- .
T Consensus 39 ~~~I~~~g~G-sS~~~~~~~~~~~~~~~~~~--------~~~~~~se~~~~~~~~~~~~~lvi~~S~SG~TpE~vaa~~~ 109 (340)
T COG2222 39 IDRILFVGCG-SSLHAATPAKYLLERELGLL--------VAAIPASEFLTNGAKYLGEDSLVIAFSQSGNTPESVAAAEL 109 (340)
T ss_pred CcEEEEEecC-chHHHHHHHHHHHHHhhCce--------eeeechhHHhccCccccCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 5789999999 55444456666666443322 13444444444444444444 9999999998553 3
Q ss_pred cccCCCcEEEEEcCCCCCCcccccceEEeecH
Q psy9406 269 SGMKDSKIIVAINQDEDAPIFDISDYGLVGDL 300 (312)
Q Consensus 269 ~G~~~s~~IvAIN~D~~ApIf~~aDygiVgD~ 300 (312)
+.-.++.+ |+|=+.+++|+-+.|||-|+=.+
T Consensus 110 a~~~ga~~-i~lT~~~dSpLa~~ad~~i~~~~ 140 (340)
T COG2222 110 AKEGGALT-IALTNEEDSPLARAADYVIPYLA 140 (340)
T ss_pred hccCCCeE-EEEecCCCChhhhcCCeeeeccC
Confidence 34445554 56666788999999999987544
No 97
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=42.57 E-value=93 Score=26.39 Aligned_cols=88 Identities=23% Similarity=0.282 Sum_probs=59.4
Q ss_pred CCCCCcEEEEeCccCCCccchHHHHHHHHHh---CCeeeecHhhHhcCCCCCCeEeccCCceeC-CceEEEEeeccchhh
Q psy9406 192 ELTSAKIVVAGGRGLGSSKNFKILEGLADKL---NAAIGASRAAVDAGYISNNLQIGQTGKIVA-PQLYIAIGISGAIQH 267 (312)
Q Consensus 192 ~l~~A~vvV~~GrG~~~~e~~~~~~~LA~~l---ga~vg~SRp~vd~gw~~~~~qIG~sG~~v~-P~lYia~GISGa~qH 267 (312)
.|.+|+.|...|.|-. ....+.++..| |-.+=+. -|. ...... -++.|++..||....
T Consensus 29 ~i~~a~~I~i~G~G~S----~~~A~~~~~~l~~~g~~~~~~---~~~-----------~~~~~~~~D~vI~iS~sG~t~~ 90 (179)
T cd05005 29 AILNAKRIFVYGAGRS----GLVAKAFAMRLMHLGLNVYVV---GET-----------TTPAIGPGDLLIAISGSGETSS 90 (179)
T ss_pred HHHhCCeEEEEecChh----HHHHHHHHHHHHhCCCeEEEe---CCC-----------CCCCCCCCCEEEEEcCCCCcHH
Confidence 3567899999999854 45677777766 3222111 110 012333 479999999998886
Q ss_pred hccc------CCCcEEEEEcCCCCCCcccccceEEee
Q psy9406 268 LSGM------KDSKIIVAINQDEDAPIFDISDYGLVG 298 (312)
Q Consensus 268 ~~G~------~~s~~IvAIN~D~~ApIf~~aDygiVg 298 (312)
+.-+ ++++ ||+|-..++.|+-+.||+-+.-
T Consensus 91 ~i~~~~~ak~~g~~-iI~IT~~~~s~la~~ad~~l~~ 126 (179)
T cd05005 91 VVNAAEKAKKAGAK-VVLITSNPDSPLAKLADVVVVI 126 (179)
T ss_pred HHHHHHHHHHCCCe-EEEEECCCCCchHHhCCEEEEe
Confidence 5433 4444 7889999999999999998853
No 98
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=40.31 E-value=3.1e+02 Score=25.53 Aligned_cols=85 Identities=15% Similarity=0.128 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcCCcEEEEE---EcCC-----c----hHHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHHHhCC-
Q psy9406 18 TLNTITAATLCSDEIHILI---IGYN-----I----EKVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVIASNY- 84 (312)
Q Consensus 18 slEll~~A~~Lg~~V~av~---~G~~-----~----~~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l~~~~- 84 (312)
..+.+..|++.|..+.+-+ +|.. . .+.++++.. .|+|++++.|.- ....|+.+.+.+..+.+..
T Consensus 122 ~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~d~i~l~DT~--G~~~P~~v~~lv~~l~~~~~ 198 (287)
T PRK05692 122 FEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFA-LGCYEISLGDTI--GVGTPGQVRAVLEAVLAEFP 198 (287)
T ss_pred HHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHH-cCCcEEEecccc--CccCHHHHHHHHHHHHHhCC
Confidence 4567777888876654322 2321 1 244556665 799999999875 3457888888888886643
Q ss_pred --cEEEEcCCCCcccHHHHHHHH
Q psy9406 85 --SHILAPATIYGKNILPRVAAL 105 (312)
Q Consensus 85 --~~IL~~aT~~GrdLaprlAar 105 (312)
.+-+=.+...|..++--+|+-
T Consensus 199 ~~~i~~H~Hn~~Gla~AN~laA~ 221 (287)
T PRK05692 199 AERLAGHFHDTYGQALANIYASL 221 (287)
T ss_pred CCeEEEEecCCCCcHHHHHHHHH
Confidence 355558899999999999774
No 99
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=39.84 E-value=2.5e+02 Score=29.57 Aligned_cols=45 Identities=9% Similarity=0.167 Sum_probs=28.5
Q ss_pred HHhhcCCcc--EEEEecCCCCCC------CCHHHHHHHHHHHHh--CCcEEEEcC
Q psy9406 47 DAKKVNNIK--KILLVDSLYFSN------NLPENIAAQISVIAS--NYSHILAPA 91 (312)
Q Consensus 47 ~~~~~~Gad--~V~~~~~~~l~~------~~~e~~a~~l~~l~~--~~~~IL~~a 91 (312)
.+++..|++ +++.++-|.++. ...+...+.+.++++ +|+.|+.+.
T Consensus 476 ~A~~~lGv~~~~v~fL~lP~y~~g~~~~~p~~~~~v~~i~~li~~~kP~~V~~~~ 530 (652)
T PRK02122 476 AACRYVGLPDEHVHFLDLPFYETGTVRKNPIGEADVEIVMDLLEEIKPHQIFVAG 530 (652)
T ss_pred HHHHhcCCCccceEECCCCCccCCccccCcccHHHHHHHHHHHHHcCCCEEEECC
Confidence 344557887 788787664332 233455666777766 689998873
No 100
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=37.83 E-value=43 Score=24.48 Aligned_cols=40 Identities=25% Similarity=0.367 Sum_probs=32.7
Q ss_pred eccCCceeCC--ceEEEEeeccchhhhcccCCCcEEEEEcCC
Q psy9406 244 IGQTGKIVAP--QLYIAIGISGAIQHLSGMKDSKIIVAINQD 283 (312)
Q Consensus 244 IG~sG~~v~P--~lYia~GISGa~qH~~G~~~s~~IvAIN~D 283 (312)
+|.+=....+ .+||.-=..|++-.-+|++.-|.|++||.-
T Consensus 3 lGv~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~ 44 (82)
T PF13180_consen 3 LGVTVQNLSDTGGVVVVSVIPGSPAAKAGLQPGDIILAINGK 44 (82)
T ss_dssp -SEEEEECSCSSSEEEEEESTTSHHHHTTS-TTEEEEEETTE
T ss_pred ECeEEEEccCCCeEEEEEeCCCCcHHHCCCCCCcEEEEECCE
Confidence 5555566666 899999999999999999999999999973
No 101
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=37.54 E-value=3.3e+02 Score=25.04 Aligned_cols=88 Identities=13% Similarity=0.037 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHhcCCcEEEEE-E--cC-Cc----hHHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHHHhCCc--
Q psy9406 16 TSTLNTITAATLCSDEIHILI-I--GY-NI----EKVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVIASNYS-- 85 (312)
Q Consensus 16 ~~slEll~~A~~Lg~~V~av~-~--G~-~~----~~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l~~~~~-- 85 (312)
+...+.+..|++.|-.+..-+ . ++ .. .+.++++.+ +|+|++++.|.- ....|+.+.+.+..+.+..+
T Consensus 118 ~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~-~Ga~~i~l~DT~--G~~~P~~v~~lv~~l~~~~~~~ 194 (275)
T cd07937 118 RNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELED-MGADSICIKDMA--GLLTPYAAYELVKALKKEVGLP 194 (275)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHH-cCCCEEEEcCCC--CCCCHHHHHHHHHHHHHhCCCe
Confidence 446678888999886665422 2 12 11 244556665 799999999874 55678888888888866533
Q ss_pred EEEEcCCCCcccHHHHHHHHc
Q psy9406 86 HILAPATIYGKNILPRVAALL 106 (312)
Q Consensus 86 ~IL~~aT~~GrdLaprlAarL 106 (312)
+=+=.+...|..++--+++.-
T Consensus 195 l~~H~Hnd~GlA~aN~laA~~ 215 (275)
T cd07937 195 IHLHTHDTSGLAVATYLAAAE 215 (275)
T ss_pred EEEEecCCCChHHHHHHHHHH
Confidence 444477889999999887753
No 102
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=37.45 E-value=1e+02 Score=27.97 Aligned_cols=56 Identities=16% Similarity=0.089 Sum_probs=38.0
Q ss_pred EEEEEEeCCCccChHHHHHHHHHHhcCCcEEEEEEcCC--chHHHHHHhhcCCccEEEEe
Q psy9406 3 ALVIAEHDNSYLKTSTLNTITAATLCSDEIHILIIGYN--IEKVILDAKKVNNIKKILLV 60 (312)
Q Consensus 3 ilv~~E~~~g~l~~~slEll~~A~~Lg~~V~av~~G~~--~~~~a~~~~~~~Gad~V~~~ 60 (312)
-++|.|...+.-.+...|++...++.-. .+-+++|.+ ..+.++++.. .|+|.|++-
T Consensus 156 ~~vYle~gs~~g~~~~~e~I~~v~~~~~-~~pvivGGGIrs~e~a~~~l~-~GAD~VVVG 213 (232)
T PRK04169 156 PIVYLEYGGGAGDPVPPEMVKAVKKALD-ITPLIYGGGIRSPEQARELMA-AGADTIVVG 213 (232)
T ss_pred CeEEEECCCCCCCCCCHHHHHHHHHhcC-CCcEEEECCCCCHHHHHHHHH-hCCCEEEEC
Confidence 3789998776667778899998888642 212344554 3445667565 799998874
No 103
>PRK11178 uridine phosphorylase; Provisional
Probab=37.15 E-value=1.1e+02 Score=27.96 Aligned_cols=56 Identities=23% Similarity=0.419 Sum_probs=37.4
Q ss_pred CceEEEEeeccchhhhcccCCCcEEEE---EcCCCCCCcccccceEEeecHhHHHHHHHhhh
Q psy9406 253 PQLYIAIGISGAIQHLSGMKDSKIIVA---INQDEDAPIFDISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 253 P~lYia~GISGa~qH~~G~~~s~~IvA---IN~D~~ApIf~~aDygiVgD~~~vlp~l~~~l 311 (312)
|+..|-+|.+|++|.= ++--++||+ +..|-+...+....|-.+.| +++.++|++.+
T Consensus 84 ~~~iI~~GtaG~l~~~--l~~GDvVI~~~a~~~Dg~s~~y~~~~~p~~~~-~~~~~~L~~~~ 142 (251)
T PRK11178 84 VRTFLRIGTTGAIQPH--INVGDVLVTTASVRLDGASLHFAPLEFPAVAD-FECTTALVEAA 142 (251)
T ss_pred CCEEEEEeccccCCCC--CCCCCEEEecceecCCCCccccCCCCcCCCCC-HHHHHHHHHHH
Confidence 8999999999999864 666777775 45565544443333444444 56777777654
No 104
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=37.09 E-value=38 Score=31.15 Aligned_cols=50 Identities=10% Similarity=0.011 Sum_probs=36.0
Q ss_pred CceEEEEeeccchhhhcc------cCCCcEEEEEcCCCCCCcccccceEEeecHhHHH
Q psy9406 253 PQLYIAIGISGAIQHLSG------MKDSKIIVAINQDEDAPIFDISDYGLVGDLFEII 304 (312)
Q Consensus 253 P~lYia~GISGa~qH~~G------~~~s~~IvAIN~D~~ApIf~~aDygiVgD~~~vl 304 (312)
.+|.|.+|-|.++.=... -+++ .||-||.+|. |.=..||+-+-+++-++|
T Consensus 205 aDlllviGTSl~V~pa~~l~~~a~~~g~-~viiIN~~~t-~~d~~a~~~i~~~~~~~l 260 (260)
T cd01409 205 ADALLVLGSSLMVYSGYRFVLAAAEAGL-PIAIVNIGPT-RADHLATLKVDARCGEVL 260 (260)
T ss_pred CCEEEEeCcCceecchhhHHHHHHHCCC-cEEEEcCCCC-CCCccccEEEeCChhhhC
Confidence 688889999988763222 2333 3677999984 455678999999988764
No 105
>PF07563 DUF1541: Protein of unknown function (DUF1541); InterPro: IPR011438 This domain is found in several hypothetical bacterial proteins as a tandem repeat.; PDB: 2KY9_A 4FIB_B.
Probab=36.80 E-value=18 Score=25.10 Aligned_cols=13 Identities=31% Similarity=0.698 Sum_probs=9.7
Q ss_pred hhhcccCCCcEEE
Q psy9406 266 QHLSGMKDSKIIV 278 (312)
Q Consensus 266 qH~~G~~~s~~Iv 278 (312)
.||.||++++-.|
T Consensus 11 dHM~GM~gA~AtI 23 (53)
T PF07563_consen 11 DHMPGMKGATATI 23 (53)
T ss_dssp -SSTTGTT-EEEE
T ss_pred ccCCccCCCEEEE
Confidence 6999999998765
No 106
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=36.42 E-value=3.3e+02 Score=24.77 Aligned_cols=91 Identities=11% Similarity=0.047 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHhcCCcEEEEEEcCCc---hHHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHHHh-CCcEEEEcC
Q psy9406 16 TSTLNTITAATLCSDEIHILIIGYNI---EKVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVIAS-NYSHILAPA 91 (312)
Q Consensus 16 ~~slEll~~A~~Lg~~V~av~~G~~~---~~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l~~-~~~~IL~~a 91 (312)
+...++++.+.+-+ ..+.++|... +.+++.+.+.||.+ +.-..++-| .++...+++.++.. ++|+++++-
T Consensus 92 dl~~~ll~~~~~~~--~~v~llG~~~~v~~~a~~~l~~~y~l~-i~g~~~Gyf---~~~e~~~i~~~I~~s~~dil~Vgl 165 (243)
T PRK03692 92 DLWEALMARAGKEG--TPVFLVGGKPEVLAQTEAKLRTQWNVN-IVGSQDGYF---TPEQRQALFERIHASGAKIVTVAM 165 (243)
T ss_pred HHHHHHHHHHHhcC--CeEEEECCCHHHHHHHHHHHHHHhCCE-EEEEeCCCC---CHHHHHHHHHHHHhcCCCEEEEEC
Confidence 44556777766554 5667788754 33444444446755 333334323 45555555555544 689999987
Q ss_pred -CCCcccHHHHHHHHcCCceee
Q psy9406 92 -TIYGKNILPRVAALLNVMQIS 112 (312)
Q Consensus 92 -T~~GrdLaprlAarL~~~lva 112 (312)
++.--.+..+...+++.+++-
T Consensus 166 G~PkQE~~~~~~~~~~~~~v~~ 187 (243)
T PRK03692 166 GSPKQEIFMRDCRLVYPDALYM 187 (243)
T ss_pred CCcHHHHHHHHHHHhCCCCEEE
Confidence 566677888889998887653
No 107
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=35.83 E-value=1.1e+02 Score=27.85 Aligned_cols=69 Identities=10% Similarity=0.114 Sum_probs=44.6
Q ss_pred EEEEEEeCCCccChHHHHHHHHHHhcCCcEEEEEEcCC--chHHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHH
Q psy9406 3 ALVIAEHDNSYLKTSTLNTITAATLCSDEIHILIIGYN--IEKVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISV 79 (312)
Q Consensus 3 ilv~~E~~~g~l~~~slEll~~A~~Lg~~V~av~~G~~--~~~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~ 79 (312)
=++|.|..+|.-.|+.-|.++..++.. -++.|.+ +.+.+++++. .|||-+++=+ - -+-+++...+.+..
T Consensus 166 ~~~YlEagsga~~Pv~~e~v~~v~~~~----~LivGGGIrs~E~A~~~a~-agAD~IVtG~-i--iee~~~~~~~~v~~ 236 (240)
T COG1646 166 PVVYLEAGSGAGDPVPVEMVSRVLSDT----PLIVGGGIRSPEQAREMAE-AGADTIVTGT-I--IEEDPDKALETVEA 236 (240)
T ss_pred eEEEEEecCCCCCCcCHHHHHHhhccc----eEEEcCCcCCHHHHHHHHH-cCCCEEEECc-e--eecCHHHHHHHHHH
Confidence 379999999999999988885544432 5566665 3566777776 6999776532 2 22234555555543
No 108
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=35.50 E-value=41 Score=30.77 Aligned_cols=96 Identities=23% Similarity=0.172 Sum_probs=59.5
Q ss_pred CCCCCcEEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCCCeEeccCCcee-CCceEEEEeeccchh----
Q psy9406 192 ELTSAKIVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISNNLQIGQTGKIV-APQLYIAIGISGAIQ---- 266 (312)
Q Consensus 192 ~l~~A~vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~~~qIG~sG~~v-~P~lYia~GISGa~q---- 266 (312)
-|.+|+.|...|.|.. ..+.+.|+..|. .+|- ++. +.+..+..-.....+ ..++.|++..||-..
T Consensus 124 ~i~~a~~I~i~G~G~s----~~~A~~~~~~l~-~~g~--~~~---~~~d~~~~~~~~~~~~~~Dv~I~iS~sg~~~~~~~ 193 (278)
T PRK11557 124 MLRSARRIILTGIGAS----GLVAQNFAWKLM-KIGI--NAV---AERDMHALLATVQALSPDDLLLAISYSGERRELNL 193 (278)
T ss_pred HHhcCCeEEEEecChh----HHHHHHHHHHHh-hCCC--eEE---EcCChHHHHHHHHhCCCCCEEEEEcCCCCCHHHHH
Confidence 4678999999999953 557777777664 1111 110 000000000111122 468999999999666
Q ss_pred --hhcccCCCcEEEEEcCCCCCCcccccceEEee
Q psy9406 267 --HLSGMKDSKIIVAINQDEDAPIFDISDYGLVG 298 (312)
Q Consensus 267 --H~~G~~~s~~IvAIN~D~~ApIf~~aDygiVg 298 (312)
..+=-++++ ||+|=..++.|+-+.||+-+..
T Consensus 194 ~~~~ak~~ga~-iI~IT~~~~s~la~~ad~~l~~ 226 (278)
T PRK11557 194 AADEALRVGAK-VLAITGFTPNALQQRASHCLYT 226 (278)
T ss_pred HHHHHHHcCCC-EEEEcCCCCCchHHhCCEEEEe
Confidence 233345555 6778888999999999999863
No 109
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=35.42 E-value=3.7e+02 Score=24.94 Aligned_cols=86 Identities=20% Similarity=0.130 Sum_probs=58.2
Q ss_pred HHHHHHHHHhcCCcEEEEEEc-----C-Cc---hHHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHHHhCC---c
Q psy9406 18 TLNTITAATLCSDEIHILIIG-----Y-NI---EKVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVIASNY---S 85 (312)
Q Consensus 18 slEll~~A~~Lg~~V~av~~G-----~-~~---~~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l~~~~---~ 85 (312)
..+++..|++.|-+|.+-+.- . .. .+.++++.. +|+|++.+.|.- ....|+...+.+..+.+.+ .
T Consensus 117 ~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~-~G~~~i~l~DT~--G~~~P~~v~~l~~~l~~~~~~~~ 193 (280)
T cd07945 117 IREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSD-LPIKRIMLPDTL--GILSPFETYTYISDMVKRYPNLH 193 (280)
T ss_pred HHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHH-cCCCEEEecCCC--CCCCHHHHHHHHHHHHhhCCCCe
Confidence 345577788887666655442 1 11 234555555 799999999874 4457888888888876543 3
Q ss_pred EEEEcCCCCcccHHHHHHHHc
Q psy9406 86 HILAPATIYGKNILPRVAALL 106 (312)
Q Consensus 86 ~IL~~aT~~GrdLaprlAarL 106 (312)
+=+=.+..+|..+|--+|+-.
T Consensus 194 i~~H~Hnd~Gla~AN~laA~~ 214 (280)
T cd07945 194 FDFHAHNDYDLAVANVLAAVK 214 (280)
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 445578899999999887743
No 110
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=34.98 E-value=3.5e+02 Score=24.58 Aligned_cols=81 Identities=15% Similarity=0.164 Sum_probs=50.4
Q ss_pred HHHHHHhc---CCcEEEEEEcCCc-hHHHHHHhhcCCcc-EEEEecCCCCCCCCHHHHHHHHHHHHhCCcEEEEcCCCCc
Q psy9406 21 TITAATLC---SDEIHILIIGYNI-EKVILDAKKVNNIK-KILLVDSLYFSNNLPENIAAQISVIASNYSHILAPATIYG 95 (312)
Q Consensus 21 ll~~A~~L---g~~V~av~~G~~~-~~~a~~~~~~~Gad-~V~~~~~~~l~~~~~e~~a~~l~~l~~~~~~IL~~aT~~G 95 (312)
++...++| ..++..+++|++. ....++.....+.+ +|.... . . +. +.++....|+.++|+...|
T Consensus 210 li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g-~-~-----~~----~~~~~~~adi~v~ps~~E~ 278 (358)
T cd03812 210 LIEIFAELLKKNPNAKLLLVGDGELEEEIKKKVKELGLEDKVIFLG-V-R-----ND----VPELLQAMDVFLFPSLYEG 278 (358)
T ss_pred HHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEec-c-c-----CC----HHHHHHhcCEEEecccccC
Confidence 44444444 3578999999754 33333443334544 454432 1 1 11 3334456799999998888
Q ss_pred ccHHHHHHHHcCCceee
Q psy9406 96 KNILPRVAALLNVMQIS 112 (312)
Q Consensus 96 rdLaprlAarL~~~lva 112 (312)
--+..-=|..+|.|+++
T Consensus 279 ~~~~~lEAma~G~PvI~ 295 (358)
T cd03812 279 LPLVLIEAQASGLPCIL 295 (358)
T ss_pred CCHHHHHHHHhCCCEEE
Confidence 88888888999999874
No 111
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=34.80 E-value=2.5e+02 Score=26.41 Aligned_cols=73 Identities=8% Similarity=0.066 Sum_probs=46.9
Q ss_pred CEEEEEEeCCCccChHHHHHHHHHHhcCCcEEEEEEcCCchHHHHHHhhcCCccEEEEecC-------CCCCCCCHHHHH
Q psy9406 2 PALVIAEHDNSYLKTSTLNTITAATLCSDEIHILIIGYNIEKVILDAKKVNNIKKILLVDS-------LYFSNNLPENIA 74 (312)
Q Consensus 2 ~ilv~~E~~~g~l~~~slEll~~A~~Lg~~V~av~~G~~~~~~a~~~~~~~Gad~V~~~~~-------~~l~~~~~e~~a 74 (312)
.|-++.++.+|.+ ..+.++...-++...++++++-.. .-.+..+.+ .++|++|-..+ |.+.++.+..+.
T Consensus 92 ~IdLii~TpGG~v-~AA~~I~~~l~~~~~~v~v~VP~~--A~SAGTlIA-LaADeIvM~p~a~LGpiDPqi~~~pA~sil 167 (285)
T PF01972_consen 92 PIDLIIHTPGGLV-DAAEQIARALREHPAKVTVIVPHY--AMSAGTLIA-LAADEIVMGPGAVLGPIDPQIGQYPAASIL 167 (285)
T ss_pred ceEEEEECCCCcH-HHHHHHHHHHHhCCCCEEEEECcc--cccHHHHHH-HhCCeEEECCCCccCCCCccccCCChHHHH
Confidence 4667777766654 577777777777777888877543 233456676 78999998764 445555554444
Q ss_pred HHHH
Q psy9406 75 AQIS 78 (312)
Q Consensus 75 ~~l~ 78 (312)
+++.
T Consensus 168 ~~~~ 171 (285)
T PF01972_consen 168 KAVE 171 (285)
T ss_pred HHHH
Confidence 4443
No 112
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=34.50 E-value=3.2e+02 Score=24.05 Aligned_cols=87 Identities=14% Similarity=0.073 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCCcEEEEEEcCC--c----hHHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHHHhCC---cEE
Q psy9406 17 STLNTITAATLCSDEIHILIIGYN--I----EKVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVIASNY---SHI 87 (312)
Q Consensus 17 ~slEll~~A~~Lg~~V~av~~G~~--~----~~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l~~~~---~~I 87 (312)
...+++..|++++.++..-..-.. . .+.++.+.. +|+|.+++.|.- ....|+.+.+.+..+.+.. .+=
T Consensus 109 ~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~i~l~Dt~--G~~~P~~v~~lv~~~~~~~~~~~l~ 185 (237)
T PF00682_consen 109 RIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAE-AGADIIYLADTV--GIMTPEDVAELVRALREALPDIPLG 185 (237)
T ss_dssp HHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHH-HT-SEEEEEETT--S-S-HHHHHHHHHHHHHHSTTSEEE
T ss_pred HHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHH-cCCeEEEeeCcc--CCcCHHHHHHHHHHHHHhccCCeEE
Confidence 456777888888876633222111 1 134455554 699999999874 4567888888888886643 355
Q ss_pred EEcCCCCcccHHHHHHHHc
Q psy9406 88 LAPATIYGKNILPRVAALL 106 (312)
Q Consensus 88 L~~aT~~GrdLaprlAarL 106 (312)
+=.+...|..+|--+++-.
T Consensus 186 ~H~Hnd~Gla~An~laA~~ 204 (237)
T PF00682_consen 186 FHAHNDLGLAVANALAALE 204 (237)
T ss_dssp EEEBBTTS-HHHHHHHHHH
T ss_pred EEecCCccchhHHHHHHHH
Confidence 5578899999998887754
No 113
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=34.44 E-value=3.7e+02 Score=24.66 Aligned_cols=87 Identities=20% Similarity=0.219 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHhcCCcEEEEEEc---CCch---HHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHHHhCC----c
Q psy9406 16 TSTLNTITAATLCSDEIHILIIG---YNIE---KVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVIASNY----S 85 (312)
Q Consensus 16 ~~slEll~~A~~Lg~~V~av~~G---~~~~---~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l~~~~----~ 85 (312)
+...+++..|++.|-+|.+-+.- .+.+ +.++++.+ +|+|+++++|.- ....|+...+.+..+.+.. .
T Consensus 109 ~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~-~g~~~i~l~DT~--G~~~P~~v~~lv~~l~~~~~~~~~ 185 (266)
T cd07944 109 DEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNE-IKPDVFYIVDSF--GSMYPEDIKRIISLLRSNLDKDIK 185 (266)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHh-CCCCEEEEecCC--CCCCHHHHHHHHHHHHHhcCCCce
Confidence 45678888899988665543332 2222 34455555 799999999874 5567888888888876532 2
Q ss_pred EEEEcCCCCcccHHHHHHHH
Q psy9406 86 HILAPATIYGKNILPRVAAL 105 (312)
Q Consensus 86 ~IL~~aT~~GrdLaprlAar 105 (312)
+=+=.+...|-.+|--+++-
T Consensus 186 i~~H~Hn~~Gla~AN~laA~ 205 (266)
T cd07944 186 LGFHAHNNLQLALANTLEAI 205 (266)
T ss_pred EEEEeCCCccHHHHHHHHHH
Confidence 44557788898888888764
No 114
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=34.06 E-value=59 Score=28.16 Aligned_cols=38 Identities=18% Similarity=0.364 Sum_probs=30.6
Q ss_pred CcEEEEEcCCCCCCcccccceEEeecHhHHHHHHHhhh
Q psy9406 274 SKIIVAINQDEDAPIFDISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 274 s~~IvAIN~D~~ApIf~~aDygiVgD~~~vlp~l~~~l 311 (312)
-|++|+|.-||=.---+.|++-||..+---+|.|++..
T Consensus 110 GK~VIaIDLNPLSRTar~AtitIVDni~RA~p~~~~~~ 147 (178)
T PF02006_consen 110 GKTVIAIDLNPLSRTARTATITIVDNITRAIPNMIEFA 147 (178)
T ss_pred CCeEEEEeCCCcccccccCceeeehhHHHHHHHHHHHH
Confidence 36788888888887788888888888888888887753
No 115
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=34.04 E-value=3.6e+02 Score=24.50 Aligned_cols=88 Identities=14% Similarity=0.094 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHhcCCcEEEEEEcC--Cc----hHHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHHHhCCc----
Q psy9406 16 TSTLNTITAATLCSDEIHILIIGY--NI----EKVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVIASNYS---- 85 (312)
Q Consensus 16 ~~slEll~~A~~Lg~~V~av~~G~--~~----~~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l~~~~~---- 85 (312)
+...+++..|++.|.+|..-..-. .. ...++++.. +|+|.+++.|.- ....|+...+.+..+.+..+
T Consensus 114 ~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~-~G~~~i~l~DT~--G~~~P~~v~~lv~~l~~~~~~~~i 190 (268)
T cd07940 114 ERAVEAVEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIE-AGATTINIPDTV--GYLTPEEFGELIKKLKENVPNIKV 190 (268)
T ss_pred HHHHHHHHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHH-cCCCEEEECCCC--CCCCHHHHHHHHHHHHHhCCCCce
Confidence 344567778888886655322211 11 234455555 799999999874 45678888888888766432
Q ss_pred -EEEEcCCCCcccHHHHHHHHc
Q psy9406 86 -HILAPATIYGKNILPRVAALL 106 (312)
Q Consensus 86 -~IL~~aT~~GrdLaprlAarL 106 (312)
+-+=.+...|..++--+++-.
T Consensus 191 ~l~~H~Hn~~GlA~An~laAi~ 212 (268)
T cd07940 191 PISVHCHNDLGLAVANSLAAVE 212 (268)
T ss_pred eEEEEecCCcchHHHHHHHHHH
Confidence 334477889999998887653
No 116
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=33.85 E-value=2.4e+02 Score=25.67 Aligned_cols=74 Identities=16% Similarity=0.165 Sum_probs=48.2
Q ss_pred CEEEEEEeCCCccChHHHHHH-------------HHHHhcCCcEEEEEEcCCchHHHHHHhhcCCccEEEEecCCCCCCC
Q psy9406 2 PALVIAEHDNSYLKTSTLNTI-------------TAATLCSDEIHILIIGYNIEKVILDAKKVNNIKKILLVDSLYFSNN 68 (312)
Q Consensus 2 ~ilv~~E~~~g~l~~~slEll-------------~~A~~Lg~~V~av~~G~~~~~~a~~~~~~~Gad~V~~~~~~~l~~~ 68 (312)
.|+.+.++.+-.+.... |.. ..+++++.++..+++|.......-.. .+++|++|..++..+.--
T Consensus 68 PIv~lvDtpG~~~g~~a-E~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lam--g~~ad~v~Alp~A~i~vm 144 (238)
T TIGR03134 68 PIVVLVDTPSQAYGRRE-ELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFLAH--GLQADRIIALPGAMVHVM 144 (238)
T ss_pred CEEEEEeCCCCCCCHHH-HHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHH--ccCcCeEEEcCCcEEEec
Confidence 37788887765553322 322 23444457889999998754332222 267999999988877777
Q ss_pred CHHHHHHHHH
Q psy9406 69 LPENIAAQIS 78 (312)
Q Consensus 69 ~~e~~a~~l~ 78 (312)
.+|..+.++.
T Consensus 145 ~~e~aa~I~~ 154 (238)
T TIGR03134 145 DLESMARVTK 154 (238)
T ss_pred CHHHHHHHHc
Confidence 8887766664
No 117
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=33.44 E-value=3.8e+02 Score=26.33 Aligned_cols=83 Identities=12% Similarity=0.151 Sum_probs=49.5
Q ss_pred CcEEEEEEcCCchHHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHHHhCCcEEEEcC--CCCcc-----cHHHHH
Q psy9406 30 DEIHILIIGYNIEKVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVIASNYSHILAPA--TIYGK-----NILPRV 102 (312)
Q Consensus 30 ~~V~av~~G~~~~~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l~~~~~~IL~~a--T~~Gr-----dLaprl 102 (312)
++|.++.-|.-.+-.++ .++.||++ |..++-+.-....++.+.++|.+ -+++++|.+-+ |+.|. +++. +
T Consensus 81 dkVLv~~nG~FG~R~~~-ia~~~g~~-v~~~~~~wg~~v~p~~v~~~L~~-~~~~~~V~~vH~ETSTGvlnpl~~I~~-~ 156 (383)
T COG0075 81 DKVLVVVNGKFGERFAE-IAERYGAE-VVVLEVEWGEAVDPEEVEEALDK-DPDIKAVAVVHNETSTGVLNPLKEIAK-A 156 (383)
T ss_pred CeEEEEeCChHHHHHHH-HHHHhCCc-eEEEeCCCCCCCCHHHHHHHHhc-CCCccEEEEEeccCcccccCcHHHHHH-H
Confidence 44555555544344443 33346665 44445555567788888887761 12456777755 88883 4444 4
Q ss_pred HHHcCCceeeeEEE
Q psy9406 103 AALLNVMQISEITK 116 (312)
Q Consensus 103 AarL~~~lvadv~~ 116 (312)
+...|.=++-|+++
T Consensus 157 ~k~~g~l~iVDaVs 170 (383)
T COG0075 157 AKEHGALLIVDAVS 170 (383)
T ss_pred HHHcCCEEEEEecc
Confidence 44558989999876
No 118
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=33.20 E-value=3.9e+02 Score=24.54 Aligned_cols=86 Identities=15% Similarity=0.160 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcCCcEEEEEE----cCC-c----hHHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHHHhCC---c
Q psy9406 18 TLNTITAATLCSDEIHILII----GYN-I----EKVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVIASNY---S 85 (312)
Q Consensus 18 slEll~~A~~Lg~~V~av~~----G~~-~----~~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l~~~~---~ 85 (312)
..+++..|++.|-+|.+-.. +.. . .+.++++.. +|+|++++.|.- ....|+...+.+..+.+.. .
T Consensus 121 ~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~-~g~~~i~l~DT~--G~~~P~~v~~lv~~l~~~~~~~~ 197 (273)
T cd07941 121 IRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAE-AGADWLVLCDTN--GGTLPHEIAEIVKEVRERLPGVP 197 (273)
T ss_pred HHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHh-CCCCEEEEecCC--CCCCHHHHHHHHHHHHHhCCCCe
Confidence 45677788888866655322 211 1 233445554 799999998864 4567888888888776542 3
Q ss_pred EEEEcCCCCcccHHHHHHHHc
Q psy9406 86 HILAPATIYGKNILPRVAALL 106 (312)
Q Consensus 86 ~IL~~aT~~GrdLaprlAarL 106 (312)
+=+=.+...|..+|--+|+..
T Consensus 198 l~~H~Hnd~Gla~An~laA~~ 218 (273)
T cd07941 198 LGIHAHNDSGLAVANSLAAVE 218 (273)
T ss_pred eEEEecCCCCcHHHHHHHHHH
Confidence 445577889999999987764
No 119
>COG1701 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.01 E-value=55 Score=29.48 Aligned_cols=38 Identities=16% Similarity=0.398 Sum_probs=34.5
Q ss_pred CcEEEEEcCCCCCCcccccceEEeecHhHHHHHHHhhh
Q psy9406 274 SKIIVAINQDEDAPIFDISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 274 s~~IvAIN~D~~ApIf~~aDygiVgD~~~vlp~l~~~l 311 (312)
-|++|+|.-||=.---+.|+.-||..+---+|.|++..
T Consensus 174 GK~ViaIDLNPLSRTar~AsItIVDnivRA~p~li~~~ 211 (256)
T COG1701 174 GKTVIAIDLNPLSRTARKASITIVDNIVRAVPNLIEFV 211 (256)
T ss_pred CCeEEEEeCCccccccccCceeeeHHHHHHHHHHHHHH
Confidence 36799999999999999999999999999999999864
No 120
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=32.04 E-value=4.3e+02 Score=24.74 Aligned_cols=103 Identities=8% Similarity=0.019 Sum_probs=54.1
Q ss_pred CCEEEEEEeCCC--ccChHHHHHHHHHHhc-CCcEEEEEEcCCchHHHHHHhhcCCccEEE--EecCCCCCCCCHHHHHH
Q psy9406 1 MPALVIAEHDNS--YLKTSTLNTITAATLC-SDEIHILIIGYNIEKVILDAKKVNNIKKIL--LVDSLYFSNNLPENIAA 75 (312)
Q Consensus 1 m~ilv~~E~~~g--~l~~~slEll~~A~~L-g~~V~av~~G~~~~~~a~~~~~~~Gad~V~--~~~~~~l~~~~~e~~a~ 75 (312)
|+|+++.-++.. .+.| ++.+-++- +-++.+++-|... ...++..+.+|.+.-+ .+.+ -.....+....
T Consensus 1 ~~i~~~~gtr~~~~~~~p----~~~~l~~~~~~~~~~~~tg~h~-~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~ 73 (365)
T TIGR00236 1 LKVSIVLGTRPEAIKMAP----LIRALKKYPEIDSYVIVTAQHR-EMLDQVLDLFHLPPDYDLNIMS--PGQTLGEITSN 73 (365)
T ss_pred CeEEEEEecCHHHHHHHH----HHHHHhhCCCCCEEEEEeCCCH-HHHHHHHHhcCCCCCeeeecCC--CCCCHHHHHHH
Confidence 888888887642 1221 22222221 2257777777654 3334444335654222 2222 12334555555
Q ss_pred HHHHHHh-----CCcEEEEcCCCCcccH-HHHHHHHcCCcee
Q psy9406 76 QISVIAS-----NYSHILAPATIYGKNI-LPRVAALLNVMQI 111 (312)
Q Consensus 76 ~l~~l~~-----~~~~IL~~aT~~GrdL-aprlAarL~~~lv 111 (312)
.+.++.+ +||+|+.-.+. .--+ +..+|.+++.|++
T Consensus 74 ~~~~l~~~l~~~~pDiv~~~gd~-~~~la~a~aa~~~~ipv~ 114 (365)
T TIGR00236 74 MLEGLEELLLEEKPDIVLVQGDT-TTTLAGALAAFYLQIPVG 114 (365)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCc-hHHHHHHHHHHHhCCCEE
Confidence 5555532 68988886543 3345 4555667888875
No 121
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=31.99 E-value=1.9e+02 Score=30.90 Aligned_cols=81 Identities=19% Similarity=0.215 Sum_probs=57.2
Q ss_pred CccChHHHHHHHHHHhcCCcEEEEEEcCCchHHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHHHhCC-cEEEEc
Q psy9406 12 SYLKTSTLNTITAATLCSDEIHILIIGYNIEKVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVIASNY-SHILAP 90 (312)
Q Consensus 12 g~l~~~slEll~~A~~Lg~~V~av~~G~~~~~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l~~~~-~~IL~~ 90 (312)
..+++.+.|.+..=+++|-+ +..+-|++ +..++..++..|.|+++ .+-.||.-++.+.++.++. .+.++|
T Consensus 536 D~~R~~a~~aI~~L~~~Gi~-~~mLTGDn-~~~A~~iA~~lGId~v~-------AellPedK~~~V~~l~~~g~~VamVG 606 (713)
T COG2217 536 DELRPDAKEAIAALKALGIK-VVMLTGDN-RRTAEAIAKELGIDEVR-------AELLPEDKAEIVRELQAEGRKVAMVG 606 (713)
T ss_pred CCCChhHHHHHHHHHHCCCe-EEEEcCCC-HHHHHHHHHHcChHhhe-------ccCCcHHHHHHHHHHHhcCCEEEEEe
Confidence 37899999999999999866 55555554 45566666668988764 4678999999999997654 566666
Q ss_pred CCCCcccHHHHHHH
Q psy9406 91 ATIYGKNILPRVAA 104 (312)
Q Consensus 91 aT~~GrdLaprlAa 104 (312)
...+. ||.||+
T Consensus 607 DGIND---APALA~ 617 (713)
T COG2217 607 DGIND---APALAA 617 (713)
T ss_pred CCchh---HHHHhh
Confidence 54432 454443
No 122
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=31.98 E-value=2.3e+02 Score=24.68 Aligned_cols=26 Identities=15% Similarity=-0.045 Sum_probs=23.1
Q ss_pred EEEEEeCCCccChHHHHHHHHHHhcC
Q psy9406 4 LVIAEHDNSYLKTSTLNTITAATLCS 29 (312)
Q Consensus 4 lv~~E~~~g~l~~~slEll~~A~~Lg 29 (312)
.|+.+..+|.-.|+|.+++..|++-|
T Consensus 109 Vvvi~IAGGdT~PvTaaii~ya~~rG 134 (217)
T COG4015 109 VVVICIAGGDTIPVTAAIINYAKERG 134 (217)
T ss_pred EEEEEecCCCcchhHHHHHHHHHHcC
Confidence 46677889999999999999999986
No 123
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=31.96 E-value=4.1e+02 Score=24.47 Aligned_cols=89 Identities=15% Similarity=0.096 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHhcCCcEEEE---EEcC-----Cc-h---HHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHHHhC
Q psy9406 16 TSTLNTITAATLCSDEIHIL---IIGY-----NI-E---KVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVIASN 83 (312)
Q Consensus 16 ~~slEll~~A~~Lg~~V~av---~~G~-----~~-~---~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l~~~ 83 (312)
+...+.+..|++.|..+.+- .+|. .. + +.++++.+ +|+|++++.|.- ....|+.+.+.+..+.+.
T Consensus 114 ~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~-~Ga~~i~l~DT~--G~~~P~~v~~lv~~l~~~ 190 (274)
T cd07938 114 ERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLD-LGCDEISLGDTI--GVATPAQVRRLLEAVLER 190 (274)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHH-cCCCEEEECCCC--CccCHHHHHHHHHHHHHH
Confidence 34556677788887665432 2331 11 1 44556665 799999999874 445788888888888664
Q ss_pred C---cEEEEcCCCCcccHHHHHHHHcC
Q psy9406 84 Y---SHILAPATIYGKNILPRVAALLN 107 (312)
Q Consensus 84 ~---~~IL~~aT~~GrdLaprlAarL~ 107 (312)
. .+-+=.+...|..+|--+++-..
T Consensus 191 ~~~~~i~~H~Hnd~GlA~AN~laA~~a 217 (274)
T cd07938 191 FPDEKLALHFHDTRGQALANILAALEA 217 (274)
T ss_pred CCCCeEEEEECCCCChHHHHHHHHHHh
Confidence 3 34555788999999998877543
No 124
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=31.70 E-value=1.7e+02 Score=26.62 Aligned_cols=72 Identities=14% Similarity=0.125 Sum_probs=41.9
Q ss_pred cCCCCCCe----EeccCCceeCCceEEEEeeccchhhhcccCCCcEEEEEcCCCCCCcccccceEEee---cHhHHHHHH
Q psy9406 235 AGYISNNL----QIGQTGKIVAPQLYIAIGISGAIQHLSGMKDSKIIVAINQDEDAPIFDISDYGLVG---DLFEIIPKF 307 (312)
Q Consensus 235 ~gw~~~~~----qIG~sG~~v~P~lYia~GISGa~qH~~G~~~s~~IvAIN~D~~ApIf~~aDygiVg---D~~~vlp~l 307 (312)
.||++... ..-.+--.+.|..+=++|. --+..|.-..-+|+-|...-..+.+.-+.|++- |..++..++
T Consensus 249 ~g~~~~~~~~~~~~~~ad~~l~ps~~e~~g~----~~~Eam~~g~PvI~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~l 324 (365)
T cd03825 249 LGSLNDDESLALIYSAADVFVVPSLQENFPN----TAIEALACGTPVVAFDVGGIPDIVDHGVTGYLAKPGDPEDLAEGI 324 (365)
T ss_pred cCCcCCHHHHHHHHHhCCEEEeccccccccH----HHHHHHhcCCCEEEecCCCChhheeCCCceEEeCCCCHHHHHHHH
Confidence 36666322 2445555666665544443 245667666668888776666677655566653 566666555
Q ss_pred Hhh
Q psy9406 308 IKY 310 (312)
Q Consensus 308 ~~~ 310 (312)
.+.
T Consensus 325 ~~l 327 (365)
T cd03825 325 EWL 327 (365)
T ss_pred HHH
Confidence 543
No 125
>PRK13761 hypothetical protein; Provisional
Probab=31.55 E-value=64 Score=29.34 Aligned_cols=38 Identities=16% Similarity=0.340 Sum_probs=34.4
Q ss_pred CcEEEEEcCCCCCCcccccceEEeecHhHHHHHHHhhh
Q psy9406 274 SKIIVAINQDEDAPIFDISDYGLVGDLFEIIPKFIKYL 311 (312)
Q Consensus 274 s~~IvAIN~D~~ApIf~~aDygiVgD~~~vlp~l~~~l 311 (312)
-|++|+|.-||=.---+.|++-||..+---+|.|++..
T Consensus 171 GK~VI~IDLNPLSRTar~A~itIVDni~RA~p~m~~~~ 208 (248)
T PRK13761 171 GKTVIAIDLNPLSRTARTATITIVDNITRAVPNMTEYA 208 (248)
T ss_pred CCeEEEEeCCCcccccccCceeeehhHHHHHHHHHHHH
Confidence 47899999999999999999999999999999998753
No 126
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=31.20 E-value=4e+02 Score=24.14 Aligned_cols=87 Identities=13% Similarity=0.098 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhcCCcEEEEE--EcCCc-h---HHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHHHhCCc---EE
Q psy9406 17 STLNTITAATLCSDEIHILI--IGYNI-E---KVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVIASNYS---HI 87 (312)
Q Consensus 17 ~slEll~~A~~Lg~~V~av~--~G~~~-~---~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l~~~~~---~I 87 (312)
...+++..|++.|-++.+-+ .+... + +.++++.+ .|+|.+++.|. +....|+...+.+..+.+..+ +=
T Consensus 113 ~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~-~G~d~i~l~DT--~G~~~P~~v~~lv~~l~~~~~~~~l~ 189 (263)
T cd07943 113 VSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMES-YGADCVYVTDS--AGAMLPDDVRERVRALREALDPTPVG 189 (263)
T ss_pred HHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHH-cCCCEEEEcCC--CCCcCHHHHHHHHHHHHHhCCCceEE
Confidence 46778888999887665544 22222 2 34455554 79999998876 456678888888888866432 33
Q ss_pred EEcCCCCcccHHHHHHHHc
Q psy9406 88 LAPATIYGKNILPRVAALL 106 (312)
Q Consensus 88 L~~aT~~GrdLaprlAarL 106 (312)
+=.+...|..+|--+|+-.
T Consensus 190 ~H~Hn~~GlA~AN~laAi~ 208 (263)
T cd07943 190 FHGHNNLGLAVANSLAAVE 208 (263)
T ss_pred EEecCCcchHHHHHHHHHH
Confidence 4477889999999998764
No 127
>KOG1185|consensus
Probab=30.69 E-value=43 Score=33.87 Aligned_cols=40 Identities=20% Similarity=0.339 Sum_probs=30.8
Q ss_pred CCCcEEEEEcCCCCCCc--ccccceEEeecHhHHHHHHHhhhC
Q psy9406 272 KDSKIIVAINQDEDAPI--FDISDYGLVGDLFEIIPKFIKYLN 312 (312)
Q Consensus 272 ~~s~~IvAIN~D~~ApI--f~~aDygiVgD~~~vlp~l~~~l~ 312 (312)
+++| +|.||.+|+-== |-.+|++|.||+..++-+|.++|+
T Consensus 301 kd~K-fIqvd~n~Eel~~n~~k~~v~i~gDig~~~~~L~e~l~ 342 (571)
T KOG1185|consen 301 KDVK-FIQVDINPEELGNNFVKPDVAIQGDIGLFVLQLVEELQ 342 (571)
T ss_pred CCce-EEEEeCCHHHHhcccCCCCceeeecHHHHHHHHHHHhc
Confidence 3555 456888774322 558999999999999999999874
No 128
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=30.39 E-value=50 Score=29.95 Aligned_cols=28 Identities=21% Similarity=0.083 Sum_probs=22.3
Q ss_pred EEEEcCCCCcc-cHHHHHHHHcCCceeee
Q psy9406 86 HILAPATIYGK-NILPRVAALLNVMQISE 113 (312)
Q Consensus 86 ~IL~~aT~~Gr-dLaprlAarL~~~lvad 113 (312)
++++|+|..|| ++|-.||.++++|++++
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~~ 32 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVISL 32 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEEE
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEEe
Confidence 57899999997 89999999999999864
No 129
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=30.32 E-value=6e+02 Score=25.88 Aligned_cols=92 Identities=14% Similarity=0.177 Sum_probs=58.9
Q ss_pred HHHHHHHHHhcCCcEEEEEEcCC-----ch----HHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHHHhCC----
Q psy9406 18 TLNTITAATLCSDEIHILIIGYN-----IE----KVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVIASNY---- 84 (312)
Q Consensus 18 slEll~~A~~Lg~~V~av~~G~~-----~~----~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l~~~~---- 84 (312)
..+.+..|++.|... +.+|.+ .. ..++++.. +|+|++.++|.- ....|+.+.+.+..+.+..
T Consensus 211 ~~~~V~~Ak~~G~~~--v~f~~EDa~Rtd~efl~~~~~~a~~-~Gad~I~l~DTv--G~~tP~~v~~lV~~l~~~~~~~~ 285 (503)
T PLN03228 211 AVSSIRYAKSLGFHD--IQFGCEDGGRSDKEFLCKILGEAIK-AGATSVGIADTV--GINMPHEFGELVTYVKANTPGID 285 (503)
T ss_pred HHHHHHHHHHcCCce--EEeccccccccCHHHHHHHHHHHHh-cCCCEEEEecCC--CCCCHHHHHHHHHHHHHHhcccc
Confidence 356777788887442 233331 11 33445554 799999999874 4557888888888775532
Q ss_pred c--EEEEcCCCCcccHHHHHHHHcCCceeeeE
Q psy9406 85 S--HILAPATIYGKNILPRVAALLNVMQISEI 114 (312)
Q Consensus 85 ~--~IL~~aT~~GrdLaprlAarL~~~lvadv 114 (312)
+ +=+=.+...|..+|--+|+-....-.-|+
T Consensus 286 ~i~I~~H~HND~GlAvANslaAi~aGa~~Vd~ 317 (503)
T PLN03228 286 DIVFSVHCHNDLGLATANTIAGICAGARQVEV 317 (503)
T ss_pred CceeEecccCCcChHHHHHHHHHHhCCCEEEE
Confidence 2 44557788999999999876544333344
No 130
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=30.09 E-value=4.9e+02 Score=26.04 Aligned_cols=81 Identities=9% Similarity=0.032 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhcCCcEEEEEEcCCchHHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHHHhCCcEEEEcCCCCcc
Q psy9406 17 STLNTITAATLCSDEIHILIIGYNIEKVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVIASNYSHILAPATIYGK 96 (312)
Q Consensus 17 ~slEll~~A~~Lg~~V~av~~G~~~~~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l~~~~~~IL~~aT~~Gr 96 (312)
..+.+....++||-++..+..........+.+....+ +.++++++ ++.....+.+.+ .++|++|-+
T Consensus 335 ~~~~la~~l~ElGm~v~~~~~~~~~~~~~~~l~~~~~-~~~~v~~d-----~~~~e~~~~i~~--~~pDliig~------ 400 (475)
T PRK14478 335 KSWSVVKALQELGMEVVGTSVKKSTDEDKERIKELMG-PDAHMIDD-----ANPRELYKMLKE--AKADIMLSG------ 400 (475)
T ss_pred hHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHcC-CCcEEEeC-----CCHHHHHHHHhh--cCCCEEEec------
Confidence 3455666667777777766665543332223322222 23444443 334444444443 257888753
Q ss_pred cHHHHHHHHcCCcee
Q psy9406 97 NILPRVAALLNVMQI 111 (312)
Q Consensus 97 dLaprlAarL~~~lv 111 (312)
.....+|.++++|++
T Consensus 401 s~~~~~a~k~giP~~ 415 (475)
T PRK14478 401 GRSQFIALKAGMPWL 415 (475)
T ss_pred CchhhhhhhcCCCEE
Confidence 344478888999998
No 131
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=30.09 E-value=55 Score=31.11 Aligned_cols=27 Identities=30% Similarity=0.218 Sum_probs=24.4
Q ss_pred EEEEcCCCCcc-cHHHHHHHHcCCceee
Q psy9406 86 HILAPATIYGK-NILPRVAALLNVMQIS 112 (312)
Q Consensus 86 ~IL~~aT~~Gr-dLaprlAarL~~~lva 112 (312)
++++|.|..|| +||=.||-+++..+++
T Consensus 6 i~I~GPTAsGKT~lai~LAk~~~~eIIs 33 (308)
T COG0324 6 IVIAGPTASGKTALAIALAKRLGGEIIS 33 (308)
T ss_pred EEEECCCCcCHHHHHHHHHHHcCCcEEe
Confidence 78889999998 9999999999997774
No 132
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=29.92 E-value=3.8e+02 Score=25.70 Aligned_cols=101 Identities=13% Similarity=0.017 Sum_probs=56.1
Q ss_pred CCEEEEEEeCCCccChHHHHHHHHHHhcCCcEEEEEEcCCchHHHHHHhhcCCccEEEEecCCCCCCCCH--HHH---HH
Q psy9406 1 MPALVIAEHDNSYLKTSTLNTITAATLCSDEIHILIIGYNIEKVILDAKKVNNIKKILLVDSLYFSNNLP--ENI---AA 75 (312)
Q Consensus 1 m~ilv~~E~~~g~l~~~slEll~~A~~Lg~~V~av~~G~~~~~~a~~~~~~~Gad~V~~~~~~~l~~~~~--e~~---a~ 75 (312)
|+||+=+-|.. .+ ..-..++..-++-|-+|.+..= +.+ ...++...||.+-..+-.+. ..... ... ..
T Consensus 1 MkIwiDi~~p~-hv-hfFk~~I~eL~~~GheV~it~R--~~~-~~~~LL~~yg~~y~~iG~~g--~~~~~Kl~~~~~R~~ 73 (335)
T PF04007_consen 1 MKIWIDITHPA-HV-HFFKNIIRELEKRGHEVLITAR--DKD-ETEELLDLYGIDYIVIGKHG--DSLYGKLLESIERQY 73 (335)
T ss_pred CeEEEECCCch-HH-HHHHHHHHHHHhCCCEEEEEEe--ccc-hHHHHHHHcCCCeEEEcCCC--CCHHHHHHHHHHHHH
Confidence 89999887764 11 1333444333444545544333 322 33456667999987776543 11111 011 11
Q ss_pred HHHHHHh--CCcEEEEcCCCCcccHHHHHHHHcCCceee
Q psy9406 76 QISVIAS--NYSHILAPATIYGKNILPRVAALLNVMQIS 112 (312)
Q Consensus 76 ~l~~l~~--~~~~IL~~aT~~GrdLaprlAarL~~~lva 112 (312)
.+.++++ +||+++...+ --++|+|.-|+.|.+.
T Consensus 74 ~l~~~~~~~~pDv~is~~s----~~a~~va~~lgiP~I~ 108 (335)
T PF04007_consen 74 KLLKLIKKFKPDVAISFGS----PEAARVAFGLGIPSIV 108 (335)
T ss_pred HHHHHHHhhCCCEEEecCc----HHHHHHHHHhCCCeEE
Confidence 1222233 6888885544 3479999999999885
No 133
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=29.09 E-value=6.1e+02 Score=25.86 Aligned_cols=95 Identities=15% Similarity=0.146 Sum_probs=61.1
Q ss_pred HHHHHHHHHhcCCcEEEEEE----cCCc--h---HHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHHHhCCc--E
Q psy9406 18 TLNTITAATLCSDEIHILII----GYNI--E---KVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVIASNYS--H 86 (312)
Q Consensus 18 slEll~~A~~Lg~~V~av~~----G~~~--~---~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l~~~~~--~ 86 (312)
..+.+..|++.+.+|..-.. +... + +.++.+.. .|+|++++.|.- ....|+.+.+.+..+.+..+ +
T Consensus 128 ~~~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~-~Gad~i~l~DTv--G~~~P~~v~~li~~l~~~~~v~i 204 (524)
T PRK12344 128 IRDSVAYLKAHGREVIFDAEHFFDGYKANPEYALATLKAAAE-AGADWVVLCDTN--GGTLPHEVAEIVAEVRAAPGVPL 204 (524)
T ss_pred HHHHHHHHHHcCCeEEEccccccccccCCHHHHHHHHHHHHh-CCCCeEEEccCC--CCcCHHHHHHHHHHHHHhcCCeE
Confidence 44666777887766543111 1111 1 33444554 799999998874 55678899988888866443 4
Q ss_pred EEEcCCCCcccHHHHHHHHcCCceeeeEE
Q psy9406 87 ILAPATIYGKNILPRVAALLNVMQISEIT 115 (312)
Q Consensus 87 IL~~aT~~GrdLaprlAarL~~~lvadv~ 115 (312)
=+=.+..+|..+|--+++-....-.-|++
T Consensus 205 ~~H~HND~GlA~ANslaAi~aGa~~Vd~T 233 (524)
T PRK12344 205 GIHAHNDSGCAVANSLAAVEAGARQVQGT 233 (524)
T ss_pred EEEECCCCChHHHHHHHHHHhCCCEEEEe
Confidence 44578889999999998876543333443
No 134
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=29.01 E-value=3e+02 Score=23.34 Aligned_cols=82 Identities=7% Similarity=-0.019 Sum_probs=45.3
Q ss_pred ccChHHHHHHHHHHhcCCcEEEEEEcCCchHHHHHHhhcCCc----cEEEEecCCCCCCCCHHHHHHHHHHHHhCC-cEE
Q psy9406 13 YLKTSTLNTITAATLCSDEIHILIIGYNIEKVILDAKKVNNI----KKILLVDSLYFSNNLPENIAAQISVIASNY-SHI 87 (312)
Q Consensus 13 ~l~~~slEll~~A~~Lg~~V~av~~G~~~~~~a~~~~~~~Ga----d~V~~~~~~~l~~~~~e~~a~~l~~l~~~~-~~I 87 (312)
.+.|-..|+|...++-|-++.. +.+......+...+..|. |.++..++.......++.+..++.++--++ +++
T Consensus 85 ~~~~g~~~~L~~l~~~g~~~~i--~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~ 162 (213)
T TIGR01449 85 SVFPGVEATLGALRAKGLRLGL--VTNKPTPLARPLLELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQQMV 162 (213)
T ss_pred ccCCCHHHHHHHHHHCCCeEEE--EeCCCHHHHHHHHHHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHcCCChhHeE
Confidence 4566677777777665544333 322233333333333453 444444443344567788888877763334 588
Q ss_pred EEcCCCCcc
Q psy9406 88 LAPATIYGK 96 (312)
Q Consensus 88 L~~aT~~Gr 96 (312)
+++.|..+-
T Consensus 163 ~igDs~~d~ 171 (213)
T TIGR01449 163 YVGDSRVDI 171 (213)
T ss_pred EeCCCHHHH
Confidence 888876443
No 135
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=28.51 E-value=64 Score=25.10 Aligned_cols=59 Identities=22% Similarity=0.312 Sum_probs=38.3
Q ss_pred ccchHHHHHHHHHhCCeeeecHhhHhcCCCCCCeEeccCCceeCCceEEEEeeccchhhhcccCCCcEEEEEcC
Q psy9406 209 SKNFKILEGLADKLNAAIGASRAAVDAGYISNNLQIGQTGKIVAPQLYIAIGISGAIQHLSGMKDSKIIVAINQ 282 (312)
Q Consensus 209 ~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~~~qIG~sG~~v~P~lYia~GISGa~qH~~G~~~s~~IvAIN~ 282 (312)
.+.++-+++||+.+|.++- ..+=|.-++..|+-||+-|===.+..+.=..+++.|| +|.
T Consensus 7 ~~~l~El~~L~~t~g~~vv--------------~~~~q~~~~~~p~~~iG~GK~eei~~~~~~~~~d~vv-fd~ 65 (95)
T PF13167_consen 7 EESLEELEELAETAGYEVV--------------GTVVQKRRKPDPKTYIGSGKVEEIKELIEELDADLVV-FDN 65 (95)
T ss_pred HHHHHHHHHHHHHCCCeEE--------------EEEEecCCCCCcceeechhHHHHHHHHHhhcCCCEEE-ECC
Confidence 3566778888888887773 3456777889999999855333333333345667665 444
No 136
>COG3754 RgpF Lipopolysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]
Probab=28.25 E-value=2.2e+02 Score=29.53 Aligned_cols=90 Identities=9% Similarity=0.122 Sum_probs=65.6
Q ss_pred CC-EEEEEEe-CCCccChHHHHHHHHHHhcCCcEEEEEEcCCchHHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHH
Q psy9406 1 MP-ALVIAEH-DNSYLKTSTLNTITAATLCSDEIHILIIGYNIEKVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQIS 78 (312)
Q Consensus 1 m~-ilv~~E~-~~g~l~~~slEll~~A~~Lg~~V~av~~G~~~~~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~ 78 (312)
|+ +.++.-. .+|.+.+.-.-++..=|.+-+++.++.=|+-++.....+. .+.|+-++-++- .++.-+|.+.+.
T Consensus 1 m~rli~~~~~d~~g~vd~yv~~ll~~lr~~~~kiv~v~ng~~s~~~~~rl~--~~~De~i~reN~---gfd~~ayr~~~e 75 (595)
T COG3754 1 MRRLILYFHYDKRGKVDAYVIYLLESLRPLVEKIVVVSNGEVSELALGRLR--SGVDEFIVRENK---GFDVWAYRDGLE 75 (595)
T ss_pred CeeEEEEEeeCCCCcccHHHHHHHHHHHhhhhcEEEEECCccCHHHHHHHH--hhhhhhhhcccc---cchhhhhhhhhh
Confidence 44 4455543 5789999999999999999888888877766666555655 489999888774 455677888877
Q ss_pred HH----HhCCc-EEEEcCCCCc
Q psy9406 79 VI----ASNYS-HILAPATIYG 95 (312)
Q Consensus 79 ~l----~~~~~-~IL~~aT~~G 95 (312)
.+ +++|| +.++..|..|
T Consensus 76 ~~g~d~l~~~del~~~n~t~yg 97 (595)
T COG3754 76 QVGFDKLAEFDELLLMNDTCYG 97 (595)
T ss_pred hhchhhhcCcceeeeecCceee
Confidence 76 34665 6666777777
No 137
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=27.91 E-value=4.6e+02 Score=23.72 Aligned_cols=85 Identities=9% Similarity=-0.033 Sum_probs=57.1
Q ss_pred HHHHHHHHHhcCCcEEEEEEcCC--c-h---HHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHHHhCC--cEEEE
Q psy9406 18 TLNTITAATLCSDEIHILIIGYN--I-E---KVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVIASNY--SHILA 89 (312)
Q Consensus 18 slEll~~A~~Lg~~V~av~~G~~--~-~---~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l~~~~--~~IL~ 89 (312)
..+++..|++.|-+|..-..-.. . + +.++++.. +|+|.++++|.- ....|+.+.+.+..+.+.+ .+=+=
T Consensus 112 ~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~-~G~~~i~l~DT~--G~~~P~~v~~lv~~l~~~~~~~l~~H 188 (259)
T cd07939 112 LRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQE-AGADRLRFADTV--GILDPFTTYELIRRLRAATDLPLEFH 188 (259)
T ss_pred HHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHH-CCCCEEEeCCCC--CCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 44677788888866553222211 1 1 33445554 799999999874 5567888888888887653 34445
Q ss_pred cCCCCcccHHHHHHHH
Q psy9406 90 PATIYGKNILPRVAAL 105 (312)
Q Consensus 90 ~aT~~GrdLaprlAar 105 (312)
.+...|-.+|--+++-
T Consensus 189 ~Hn~~Gla~An~laAi 204 (259)
T cd07939 189 AHNDLGLATANTLAAV 204 (259)
T ss_pred ecCCCChHHHHHHHHH
Confidence 7788999888888764
No 138
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=27.83 E-value=3.4e+02 Score=22.20 Aligned_cols=39 Identities=21% Similarity=0.282 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHHhCCcEEEE-cCCCCc-ccHHHHHHHHcC
Q psy9406 69 LPENIAAQISVIASNYSHILA-PATIYG-KNILPRVAALLN 107 (312)
Q Consensus 69 ~~e~~a~~l~~l~~~~~~IL~-~aT~~G-rdLaprlAarL~ 107 (312)
+.+.+.+.+.++.+++|+|+. |.+..| +|+.+..-.+++
T Consensus 52 d~~~i~~~l~~~~~~~DliIttGG~g~g~~D~t~~ai~~~g 92 (144)
T TIGR00177 52 DPEEIREILRKAVDEADVVLTTGGTGVGPRDVTPEALEELG 92 (144)
T ss_pred CHHHHHHHHHHHHhCCCEEEECCCCCCCCCccHHHHHHHhC
Confidence 356778888887777897777 445555 799999999988
No 139
>cd03518 Link_domain_HAPLN_module_1 Link_domain_HAPLN_module_1; this link domain is found in the first link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding domain. HAPLNs contain two contiguous link modules. Both link modules of cartilage link protein are involved in interaction with HA. In cartilage, a chondroitin sulfate proteoglycan core protein (CSPG) aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggregates with other CSPGs substituting for aggregan may contribute to the structural integrity of many different tissues. Members of the vertebrate HAPLN gene family are physically linked adjacent to CSPG genes.
Probab=27.82 E-value=56 Score=25.53 Aligned_cols=32 Identities=19% Similarity=0.386 Sum_probs=25.8
Q ss_pred ccchHHHHHHHHHhCCeeeecHhh----------HhcCCCCC
Q psy9406 209 SKNFKILEGLADKLNAAIGASRAA----------VDAGYISN 240 (312)
Q Consensus 209 ~e~~~~~~~LA~~lga~vg~SRp~----------vd~gw~~~ 240 (312)
+=||..+++..+.+||.++..--+ ||.||+..
T Consensus 13 ~l~f~eA~~aC~~~ga~lAs~~QL~~Aw~~Gld~C~~GWL~D 54 (95)
T cd03518 13 NLNFHEAQQACEEQDATLASFEQLYQAWTEGLDWCNAGWLSD 54 (95)
T ss_pred ccCHHHHHHHHHHcCCeeCCHHHHHHHHHcCccccCcccccC
Confidence 347899999999999999765444 78899965
No 140
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=27.76 E-value=3.4e+02 Score=24.86 Aligned_cols=94 Identities=9% Similarity=0.057 Sum_probs=55.4
Q ss_pred CCEEEEEEeCCCccChHHHHHHHHHHhcCCcEEEEEEcCCchHHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHH
Q psy9406 1 MPALVIAEHDNSYLKTSTLNTITAATLCSDEIHILIIGYNIEKVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVI 80 (312)
Q Consensus 1 m~ilv~~E~~~g~l~~~slEll~~A~~Lg~~V~av~~G~~~~~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l 80 (312)
|+|||+.=+.+| .+|...-.+.|-+|.+.+.+...... +.. .|...|+. ..++.+...+.+.+
T Consensus 1 m~ILvlGGT~eg------r~la~~L~~~g~~v~~s~~t~~~~~~---~~~-~g~~~v~~------g~l~~~~l~~~l~~- 63 (256)
T TIGR00715 1 MTVLLMGGTVDS------RAIAKGLIAQGIEILVTVTTSEGKHL---YPI-HQALTVHT------GALDPQELREFLKR- 63 (256)
T ss_pred CeEEEEechHHH------HHHHHHHHhCCCeEEEEEccCCcccc---ccc-cCCceEEE------CCCCHHHHHHHHHh-
Confidence 889999876543 34444434445577777666543321 222 34444442 12334444333331
Q ss_pred HhCCcEEEEcCCCCcc---cHHHHHHHHcCCceee
Q psy9406 81 ASNYSHILAPATIYGK---NILPRVAALLNVMQIS 112 (312)
Q Consensus 81 ~~~~~~IL~~aT~~Gr---dLaprlAarL~~~lva 112 (312)
.++++|+-...++-. .-+.+.+.+++.|++.
T Consensus 64 -~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR 97 (256)
T TIGR00715 64 -HSIDILVDATHPFAAQITTNATAVCKELGIPYVR 97 (256)
T ss_pred -cCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEE
Confidence 257888888888874 6677888899999884
No 141
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=27.74 E-value=4.4e+02 Score=23.46 Aligned_cols=97 Identities=16% Similarity=0.143 Sum_probs=54.8
Q ss_pred CCEEEEEEeCCCccChHHHHHHHHHHhc---CCcEEEEEEcCCchHHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHH
Q psy9406 1 MPALVIAEHDNSYLKTSTLNTITAATLC---SDEIHILIIGYNIEKVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQI 77 (312)
Q Consensus 1 m~ilv~~E~~~g~l~~~slEll~~A~~L---g~~V~av~~G~~~~~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l 77 (312)
|+|.|++-..+ . .+|.|-.|.+- ..++.+++-.....-..+.+.+ +|.... +++...|. .-++|-..|
T Consensus 1 ~ki~VlaSG~G-S----Nlqaiida~~~~~~~a~i~~Visd~~~A~~lerA~~-~gIpt~-~~~~k~~~--~r~~~d~~l 71 (200)
T COG0299 1 KKIAVLASGNG-S----NLQAIIDAIKGGKLDAEIVAVISDKADAYALERAAK-AGIPTV-VLDRKEFP--SREAFDRAL 71 (200)
T ss_pred CeEEEEEeCCc-c----cHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHH-cCCCEE-EeccccCC--CHHHHHHHH
Confidence 57888887544 2 24555444442 3467777665434444555554 788764 44444343 456777777
Q ss_pred HHHHh--CCcEEEEcCCCCcccHHHHHHHHcCC
Q psy9406 78 SVIAS--NYSHILAPATIYGKNILPRVAALLNV 108 (312)
Q Consensus 78 ~~l~~--~~~~IL~~aT~~GrdLaprlAarL~~ 108 (312)
.+.++ ++|+|++.. +=|-|+|.+=.++..
T Consensus 72 ~~~l~~~~~dlvvLAG--yMrIL~~~fl~~~~g 102 (200)
T COG0299 72 VEALDEYGPDLVVLAG--YMRILGPEFLSRFEG 102 (200)
T ss_pred HHHHHhcCCCEEEEcc--hHHHcCHHHHHHhhc
Confidence 77766 578777643 124445554444443
No 142
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=27.30 E-value=3.2e+02 Score=24.29 Aligned_cols=44 Identities=11% Similarity=0.062 Sum_probs=26.9
Q ss_pred HHHHHHHhCCcEEEEcCCCCcccHHHHHHHHcCCceeeeEEEee
Q psy9406 75 AQISVIASNYSHILAPATIYGKNILPRVAALLNVMQISEITKVC 118 (312)
Q Consensus 75 ~~l~~l~~~~~~IL~~aT~~GrdLaprlAarL~~~lvadv~~l~ 118 (312)
..+.+.+++..+.|+-+.+.++..++++|.+++.|....=+-|+
T Consensus 109 ~~vl~~l~~~gl~FvDS~T~~~s~a~~~A~~~gvp~~~rdvfLD 152 (213)
T PF04748_consen 109 RWVLEVLKERGLFFVDSRTTPRSVAPQVAKELGVPAARRDVFLD 152 (213)
T ss_dssp HHHHHHHHHTT-EEEE-S--TT-SHHHHHHHCT--EEE-SEETT
T ss_pred HHHHHHHHHcCCEEEeCCCCcccHHHHHHHHcCCCEEeeceecC
Confidence 33334445568999999999999999999999999887544444
No 143
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=27.25 E-value=5e+02 Score=24.14 Aligned_cols=84 Identities=19% Similarity=0.196 Sum_probs=50.1
Q ss_pred CccChHHHHHHHHHHhcCCcEEEEEEcCC-------chHHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHHHhCC
Q psy9406 12 SYLKTSTLNTITAATLCSDEIHILIIGYN-------IEKVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVIASNY 84 (312)
Q Consensus 12 g~l~~~slEll~~A~~Lg~~V~av~~G~~-------~~~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l~~~~ 84 (312)
|--.+.++|++...|+-+.++-.++++.- .+...+.+.+ .|+|-+++.|-|.- ..+-+.+.++++
T Consensus 75 g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~-~GvdGlivpDLP~e-------e~~~~~~~~~~~ 146 (265)
T COG0159 75 GVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKE-AGVDGLLVPDLPPE-------ESDELLKAAEKH 146 (265)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHH-cCCCEEEeCCCChH-------HHHHHHHHHHHc
Confidence 33346788999999877656556666642 3455667776 79999999876521 233334444433
Q ss_pred --cEEEEcCCCCcccHHHHHH
Q psy9406 85 --SHILAPATIYGKNILPRVA 103 (312)
Q Consensus 85 --~~IL~~aT~~GrdLaprlA 103 (312)
+.|++-+-+...+...+++
T Consensus 147 gi~~I~lvaPtt~~~rl~~i~ 167 (265)
T COG0159 147 GIDPIFLVAPTTPDERLKKIA 167 (265)
T ss_pred CCcEEEEeCCCCCHHHHHHHH
Confidence 5666544333444444443
No 144
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=27.15 E-value=3.7e+02 Score=22.83 Aligned_cols=79 Identities=4% Similarity=-0.015 Sum_probs=44.9
Q ss_pred ccChHHHHHHHHHHhcCCcEEEEEEcCCchHHHHHHhhcCCc----cEEEEecCCCCCCCCHHHHHHHHHHHHhCC-cEE
Q psy9406 13 YLKTSTLNTITAATLCSDEIHILIIGYNIEKVILDAKKVNNI----KKILLVDSLYFSNNLPENIAAQISVIASNY-SHI 87 (312)
Q Consensus 13 ~l~~~slEll~~A~~Lg~~V~av~~G~~~~~~a~~~~~~~Ga----d~V~~~~~~~l~~~~~e~~a~~l~~l~~~~-~~I 87 (312)
.+.+-..++|...++.+-++ .++.+.....+.......|. |.++..++-......++.+..++.++--++ +++
T Consensus 75 ~~~~g~~~~L~~L~~~g~~~--~i~Sn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~l 152 (205)
T TIGR01454 75 EVFPGVPELLAELRADGVGT--AIATGKSGPRARSLLEALGLLPLFDHVIGSDEVPRPKPAPDIVREALRLLDVPPEDAV 152 (205)
T ss_pred ccCCCHHHHHHHHHHCCCeE--EEEeCCchHHHHHHHHHcCChhheeeEEecCcCCCCCCChHHHHHHHHHcCCChhheE
Confidence 45666777887777665333 33333333333333333565 455555543344557778877777663233 588
Q ss_pred EEcCCC
Q psy9406 88 LAPATI 93 (312)
Q Consensus 88 L~~aT~ 93 (312)
+++.+.
T Consensus 153 ~igD~~ 158 (205)
T TIGR01454 153 MVGDAV 158 (205)
T ss_pred EEcCCH
Confidence 888875
No 145
>PRK10481 hypothetical protein; Provisional
Probab=27.01 E-value=4.7e+02 Score=23.59 Aligned_cols=83 Identities=7% Similarity=0.011 Sum_probs=56.6
Q ss_pred CCcEEEEEEcCCc-hHHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHHHh-CCcEEEEcCCCCcccHHHHHHHHc
Q psy9406 29 SDEIHILIIGYNI-EKVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVIAS-NYSHILAPATIYGKNILPRVAALL 106 (312)
Q Consensus 29 g~~V~av~~G~~~-~~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l~~-~~~~IL~~aT~~GrdLaprlAarL 106 (312)
+.++-++..-... +...++... +|.+-.+.+.+| +. ...+.+.++..++.. +.|+|++.-+-...+..+.+...+
T Consensus 129 g~riGVitP~~~qi~~~~~kw~~-~G~~v~~~~asp-y~-~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~~~~~~le~~l 205 (224)
T PRK10481 129 GHQVGVIVPVEEQLAQQAQKWQV-LQKPPVFALASP-YH-GSEEELIDAGKELLDQGADVIVLDCLGYHQRHRDLLQKAL 205 (224)
T ss_pred CCeEEEEEeCHHHHHHHHHHHHh-cCCceeEeecCC-CC-CCHHHHHHHHHHhhcCCCCEEEEeCCCcCHHHHHHHHHHH
Confidence 4566666665543 344445554 688877766655 22 344456666666643 689999999888879999999999
Q ss_pred CCceeeeE
Q psy9406 107 NVMQISEI 114 (312)
Q Consensus 107 ~~~lvadv 114 (312)
|.|++.-.
T Consensus 206 g~PVI~~n 213 (224)
T PRK10481 206 DVPVLLSN 213 (224)
T ss_pred CcCEEcHH
Confidence 99998643
No 146
>TIGR01704 MTA/SAH-Nsdase 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase. There are homologs of this enzyme in plants, some of which score between trusted and noise cutoffs here, but there is no experimental evidence to validate this function at this time.
Probab=26.84 E-value=90 Score=27.82 Aligned_cols=38 Identities=26% Similarity=0.480 Sum_probs=28.9
Q ss_pred eCCceEEEEeeccchhhhcccCCCcEEEE---EcCCCCCCccc
Q psy9406 251 VAPQLYIAIGISGAIQHLSGMKDSKIIVA---INQDEDAPIFD 290 (312)
Q Consensus 251 v~P~lYia~GISGa~qH~~G~~~s~~IvA---IN~D~~ApIf~ 290 (312)
-+|++-|-+|++|+.+. +++--|+||+ ++.|-+...|.
T Consensus 65 ~~p~~II~~G~aG~l~~--~l~~GDvvi~~~~~~~d~~~~~~~ 105 (228)
T TIGR01704 65 CKPDVIINTGSAGGLAP--TLKVGDIVVSDEARYHDADVTAFG 105 (228)
T ss_pred CCCCEEEEEeeccCCCC--CCccCCEEEEEEEEEccCcccccC
Confidence 45999999999999998 5666677776 45676665543
No 147
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=26.75 E-value=1.1e+02 Score=24.07 Aligned_cols=45 Identities=27% Similarity=0.305 Sum_probs=35.1
Q ss_pred CceEEEEeeccchhhhc------ccCCCcEEEEEcCCCCCCcccccceEEee
Q psy9406 253 PQLYIAIGISGAIQHLS------GMKDSKIIVAINQDEDAPIFDISDYGLVG 298 (312)
Q Consensus 253 P~lYia~GISGa~qH~~------G~~~s~~IvAIN~D~~ApIf~~aDygiVg 298 (312)
-++.|++..||..+-+. =-++++ ||+|=.+++.|+-+.||+-+.-
T Consensus 48 ~d~vi~iS~sG~t~~~~~~~~~a~~~g~~-vi~iT~~~~s~la~~ad~~l~~ 98 (128)
T cd05014 48 GDVVIAISNSGETDELLNLLPHLKRRGAP-IIAITGNPNSTLAKLSDVVLDL 98 (128)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCe-EEEEeCCCCCchhhhCCEEEEC
Confidence 47999999999887332 223333 8889999999999999998864
No 148
>COG2139 RPL21A Ribosomal protein L21E [Translation, ribosomal structure and biogenesis]
Probab=26.48 E-value=58 Score=25.46 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=23.9
Q ss_pred CCCCCCeEeccCCceeCCceEEEEeeccchhhhcccCCCcEEEEEc
Q psy9406 236 GYISNNLQIGQTGKIVAPQLYIAIGISGAIQHLSGMKDSKIIVAIN 281 (312)
Q Consensus 236 gw~~~~~qIG~sG~~v~P~lYia~GISGa~qH~~G~~~s~~IvAIN 281 (312)
.|||+-|.=|-||++| |+++.-++|+||
T Consensus 49 kGmPh~rf~G~TG~Vv------------------g~~g~ay~V~v~ 76 (98)
T COG2139 49 KGMPHPRFQGKTGTVV------------------GVRGRAYKVEVY 76 (98)
T ss_pred cCCCCccccCcceEEE------------------eccCCEEEEEEe
Confidence 5699999999999875 777888888887
No 149
>PRK13374 purine nucleoside phosphorylase; Provisional
Probab=26.27 E-value=1.4e+02 Score=26.83 Aligned_cols=55 Identities=25% Similarity=0.357 Sum_probs=39.1
Q ss_pred CCCcEEEEeCccCCCccchHHHHHHHHHhCCeeeecHhhHhcCCCCCCeEeccCCceeCCceEEEEeeccchhhhcccCC
Q psy9406 194 TSAKIVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISNNLQIGQTGKIVAPQLYIAIGISGAIQHLSGMKD 273 (312)
Q Consensus 194 ~~A~vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~vd~gw~~~~~qIG~sG~~v~P~lYia~GISGa~qH~~G~~~ 273 (312)
..-+++| ..-|||.+..=-.+++|.+.+| |+..|-+|.+|+.|. .++-
T Consensus 54 ~g~~v~v-~~~GiG~~~Aai~~~eLi~~~g-----------------------------~~~iI~~GtaG~l~~--~l~~ 101 (233)
T PRK13374 54 KGKKVSV-MGHGMGIPSMVIYVHELIATFG-----------------------------VKNIIRVGSCGATQD--DVKL 101 (233)
T ss_pred CCEEEEE-EeCCCCHhHHHHHHHHHHHHcC-----------------------------CcEEEEEeccccCCC--CCCC
Confidence 3445444 4556776544457788887776 899999999999995 5776
Q ss_pred CcEEEEE
Q psy9406 274 SKIIVAI 280 (312)
Q Consensus 274 s~~IvAI 280 (312)
-|+||+=
T Consensus 102 GDvVI~~ 108 (233)
T PRK13374 102 MDVIIAQ 108 (233)
T ss_pred CCEEEEe
Confidence 7777754
No 150
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=26.02 E-value=7.2e+02 Score=25.39 Aligned_cols=94 Identities=15% Similarity=0.148 Sum_probs=61.1
Q ss_pred HHHHHHHHhcCCcEEEEEE----cC-Cc----hHHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHHHhCCc---E
Q psy9406 19 LNTITAATLCSDEIHILII----GY-NI----EKVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVIASNYS---H 86 (312)
Q Consensus 19 lEll~~A~~Lg~~V~av~~----G~-~~----~~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l~~~~~---~ 86 (312)
.+.+..|++.+.+|..... +. .. .+.++.+.. .|+|+++++|. .....|+.+.+.+..+.+..+ +
T Consensus 125 ~~~v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~~-aGad~i~i~DT--vG~~~P~~v~~li~~l~~~~~~~~i 201 (526)
T TIGR00977 125 YDTVAYLKRQGDEVIYDAEHFFDGYKANPEYALATLATAQQ-AGADWLVLCDT--NGGTLPHEISEITTKVKRSLKQPQL 201 (526)
T ss_pred HHHHHHHHHcCCeEEEEeeeeeecccCCHHHHHHHHHHHHh-CCCCeEEEecC--CCCcCHHHHHHHHHHHHHhCCCCEE
Confidence 4456677777766653222 21 11 234455554 79999999976 456689999999998876533 3
Q ss_pred EEEcCCCCcccHHHHHHHHcCCceeeeEE
Q psy9406 87 ILAPATIYGKNILPRVAALLNVMQISEIT 115 (312)
Q Consensus 87 IL~~aT~~GrdLaprlAarL~~~lvadv~ 115 (312)
=+=.+..+|..+|--+|+-....-.-||+
T Consensus 202 ~vH~HND~GlAvANslaAv~AGA~~Vd~T 230 (526)
T TIGR00977 202 GIHAHNDSGTAVANSLLAVEAGATMVQGT 230 (526)
T ss_pred EEEECCCCChHHHHHHHHHHhCCCEEEEe
Confidence 44478899999998887765443334443
No 151
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=25.93 E-value=4.2e+02 Score=25.30 Aligned_cols=80 Identities=15% Similarity=0.199 Sum_probs=47.7
Q ss_pred EEEEEcCCc--hHHHHHHhhcCCccEEEEecCCCCCC------------------CCHHHHHHHHHHH------------
Q psy9406 33 HILIIGYNI--EKVILDAKKVNNIKKILLVDSLYFSN------------------NLPENIAAQISVI------------ 80 (312)
Q Consensus 33 ~av~~G~~~--~~~a~~~~~~~Gad~V~~~~~~~l~~------------------~~~e~~a~~l~~l------------ 80 (312)
.++++|.+. ...++.++. .|+.++.++|.+..+. +-+++.++.+.++
T Consensus 26 ~VlIiG~GglGs~va~~La~-aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~~~ 104 (338)
T PRK12475 26 HVLIVGAGALGAANAEALVR-AGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVVTD 104 (338)
T ss_pred cEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEecc
Confidence 566777653 567777776 8999999998764321 1122222333332
Q ss_pred ---------HhCCcEEEEcCCCC-cccHHHHHHHHcCCceeee
Q psy9406 81 ---------ASNYSHILAPATIY-GKNILPRVAALLNVMQISE 113 (312)
Q Consensus 81 ---------~~~~~~IL~~aT~~-GrdLaprlAarL~~~lvad 113 (312)
.+++|+|+-..... -|.+.-.++.+.+.|++..
T Consensus 105 ~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~ 147 (338)
T PRK12475 105 VTVEELEELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIYG 147 (338)
T ss_pred CCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 33456666554332 3666677777778777643
No 152
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=25.89 E-value=5.9e+02 Score=24.31 Aligned_cols=109 Identities=14% Similarity=0.154 Sum_probs=65.8
Q ss_pred EEEeCCCccChHHHHHHHHHHhc---C-CcEEEEEE--cCCc------------hHHHHHHhhcCCccEEEEecCC--CC
Q psy9406 6 IAEHDNSYLKTSTLNTITAATLC---S-DEIHILII--GYNI------------EKVILDAKKVNNIKKILLVDSL--YF 65 (312)
Q Consensus 6 ~~E~~~g~l~~~slEll~~A~~L---g-~~V~av~~--G~~~------------~~~a~~~~~~~Gad~V~~~~~~--~l 65 (312)
+......-.++.-.|||-..-.+ + .++++++- |+.. ..+...+...+|+|+|+.+|-. +.
T Consensus 56 I~qs~~~pvnd~lmELLi~idA~k~asA~~It~ViPY~gYARQDk~~~~repIsaklvA~lL~~aG~drv~TvDlH~~qi 135 (314)
T COG0462 56 IIQSTSPPVNDNLMELLIMIDALKRASAKRITAVIPYFGYARQDKAFKPREPISAKLVANLLETAGADRVLTVDLHAPQI 135 (314)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHhcCCceEEEEeecchhhccCcccCCCCCEeHHHHHHHHHHcCCCeEEEEcCCchhh
Confidence 44545555677777887654443 3 57777763 3211 1223344445799999999732 22
Q ss_pred CCCCH-----HHHHHHHHHHHhC---C-cEEEEcCCCCcccHHHHHHHHcCCceeeeEE
Q psy9406 66 SNNLP-----ENIAAQISVIASN---Y-SHILAPATIYGKNILPRVAALLNVMQISEIT 115 (312)
Q Consensus 66 ~~~~~-----e~~a~~l~~l~~~---~-~~IL~~aT~~GrdLaprlAarL~~~lvadv~ 115 (312)
++|-. .-..+.+.+..++ . +.++++...-|..-|..+|.+|+.+ .+-.-
T Consensus 136 qgfFdipvdnl~a~p~l~~~~~~~~~~~d~vVVSPD~Ggv~RAr~~A~~L~~~-~a~i~ 193 (314)
T COG0462 136 QGFFDIPVDNLYAAPLLAEYIREKYDLDDPVVVSPDKGGVKRARALADRLGAP-LAIID 193 (314)
T ss_pred cccCCCccccccchHHHHHHHHHhcCCCCcEEECCCccHHHHHHHHHHHhCCC-EEEEE
Confidence 22211 0123444544332 2 6788888899999999999999999 44333
No 153
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=25.82 E-value=2.7e+02 Score=26.34 Aligned_cols=78 Identities=6% Similarity=0.088 Sum_probs=43.5
Q ss_pred HHHHHHHhcCCcEEEEEEcC--CchHHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHH----HHHHhCCcEEEEcCCC
Q psy9406 20 NTITAATLCSDEIHILIIGY--NIEKVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQI----SVIASNYSHILAPATI 93 (312)
Q Consensus 20 Ell~~A~~Lg~~V~av~~G~--~~~~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l----~~l~~~~~~IL~~aT~ 93 (312)
-||..||+.| =|..-+-.+ ...++.+++.+.+|.++++++.++. .....+..+.+. .+..++.+.|=+ .
T Consensus 48 RlL~~Ar~~G-iV~I~I~~~~~~~~~Le~~L~~~fgLk~~iVvp~~~-~~~~~~~vg~~aA~~L~~~l~~~~~IGv---s 122 (318)
T PRK15418 48 RLLEKGRQSG-IIRVQINSRFEGCLELENALRQHFSLQHIRVLPALA-DADIGGRLGIGAAHMLMSLLQPQQLLAV---G 122 (318)
T ss_pred HHHHHHHHcC-cEEEEEeCCCccHHHHHHHHHHHhCCCEEEEEeCCC-cccHHHHHHHHHHHHHHHhcCCCCEEEE---c
Confidence 5788888887 233322222 2345667777779999999997542 111223333333 333333344433 4
Q ss_pred CcccHHHHH
Q psy9406 94 YGKNILPRV 102 (312)
Q Consensus 94 ~GrdLaprl 102 (312)
+|+.+...+
T Consensus 123 wG~Tl~~~~ 131 (318)
T PRK15418 123 FGEATMNTL 131 (318)
T ss_pred chHHHHHHH
Confidence 777776666
No 154
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=25.32 E-value=63 Score=25.16 Aligned_cols=35 Identities=23% Similarity=0.458 Sum_probs=27.6
Q ss_pred eeCCceEEEEeeccchh--------------hhcccCCCcEEEEEcCCCC
Q psy9406 250 IVAPQLYIAIGISGAIQ--------------HLSGMKDSKIIVAINQDED 285 (312)
Q Consensus 250 ~v~P~lYia~GISGa~q--------------H~~G~~~s~~IvAIN~D~~ 285 (312)
.=+|++|+.+|.|.... -++|+ +.++|++++.+.-
T Consensus 38 ~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~l-dvEvV~a~~~~~~ 86 (97)
T PF06722_consen 38 PGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGL-DVEVVVALPAAQR 86 (97)
T ss_dssp TSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTS-SSEEEEEETTCCC
T ss_pred CCCCEEEEEcCCCccccccccchHHHHHHHHHHhhC-CcEEEEECCHHHH
Confidence 34789999999988763 26778 8999999996543
No 155
>smart00445 LINK Link (Hyaluronan-binding).
Probab=25.14 E-value=72 Score=24.85 Aligned_cols=32 Identities=16% Similarity=0.268 Sum_probs=26.1
Q ss_pred ccchHHHHHHHHHhCCeeeecHhh----------HhcCCCCC
Q psy9406 209 SKNFKILEGLADKLNAAIGASRAA----------VDAGYISN 240 (312)
Q Consensus 209 ~e~~~~~~~LA~~lga~vg~SRp~----------vd~gw~~~ 240 (312)
+=||..+++..+.+||.++..--+ ||.||+..
T Consensus 14 ~l~f~eA~~aC~~~ga~lAs~~QL~~Aw~~Gld~C~~GWL~D 55 (94)
T smart00445 14 KLTFAEAREACRAQGATLATVGQLYAAWQDGFDTCDAGWLAD 55 (94)
T ss_pred ccCHHHHHHHHHHcCCEeCCHHHHHHHHHhchhhcCcccccC
Confidence 458899999999999999765443 78899974
No 156
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=24.98 E-value=4.6e+02 Score=22.78 Aligned_cols=31 Identities=29% Similarity=0.345 Sum_probs=23.0
Q ss_pred EEEEEcCCc--hHHHHHHhhcCCccEEEEecCCC
Q psy9406 33 HILIIGYNI--EKVILDAKKVNNIKKILLVDSLY 64 (312)
Q Consensus 33 ~av~~G~~~--~~~a~~~~~~~Gad~V~~~~~~~ 64 (312)
.++++|-+. ...++.++. .|+.++.++|++.
T Consensus 23 ~VlviG~GglGs~ia~~La~-~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 23 HVLIIGAGGLGSPAALYLAG-AGVGTIVIVDDDH 55 (202)
T ss_pred CEEEECCCHHHHHHHHHHHH-cCCCeEEEecCCE
Confidence 556677653 567777776 8999999998764
No 157
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=24.97 E-value=5.2e+02 Score=23.35 Aligned_cols=83 Identities=13% Similarity=0.116 Sum_probs=48.5
Q ss_pred HHHHHHHHhcC---CcEEEEEEcCCc-hHHHHHHhhcCCc-cEEEEecCCCCCCCCHHHHHHHHHHHHhCCcEEEEcCCC
Q psy9406 19 LNTITAATLCS---DEIHILIIGYNI-EKVILDAKKVNNI-KKILLVDSLYFSNNLPENIAAQISVIASNYSHILAPATI 93 (312)
Q Consensus 19 lEll~~A~~Lg---~~V~av~~G~~~-~~~a~~~~~~~Ga-d~V~~~~~~~l~~~~~e~~a~~l~~l~~~~~~IL~~aT~ 93 (312)
.+++.+++++. .++..+++|.+. .+..++.....+. +.|..... . +. +.++....|++++|+..
T Consensus 204 ~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~------~-~~----~~~~~~~ad~~v~~s~~ 272 (360)
T cd04951 204 PNLLKAFAKLLSDYLDIKLLIAGDGPLRATLERLIKALGLSNRVKLLGL------R-DD----IAAYYNAADLFVLSSAW 272 (360)
T ss_pred HHHHHHHHHHHhhCCCeEEEEEcCCCcHHHHHHHHHhcCCCCcEEEecc------c-cc----HHHHHHhhceEEecccc
Confidence 35666666663 258888888754 2222333332443 34555431 1 11 23334456888998877
Q ss_pred CcccHHHHHHHHcCCceee
Q psy9406 94 YGKNILPRVAALLNVMQIS 112 (312)
Q Consensus 94 ~GrdLaprlAarL~~~lva 112 (312)
.|--+..-=|..+|.|+++
T Consensus 273 e~~~~~~~Ea~a~G~PvI~ 291 (360)
T cd04951 273 EGFGLVVAEAMACELPVVA 291 (360)
T ss_pred cCCChHHHHHHHcCCCEEE
Confidence 7766777777888888874
No 158
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=24.82 E-value=6.4e+02 Score=24.38 Aligned_cols=87 Identities=7% Similarity=-0.006 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhcCCcEEEEEEcC--Cch----HHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHHHhCC--cEEE
Q psy9406 17 STLNTITAATLCSDEIHILIIGY--NIE----KVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVIASNY--SHIL 88 (312)
Q Consensus 17 ~slEll~~A~~Lg~~V~av~~G~--~~~----~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l~~~~--~~IL 88 (312)
...+.+..|++.|-+|..-..-. ... +.++.+.. +|+|+++++|.- ....|+.+.+.+..+.+.. .+=+
T Consensus 117 ~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~-~Ga~~I~l~DT~--G~~~P~~v~~lv~~l~~~~~~~l~~ 193 (378)
T PRK11858 117 RMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEE-AGADRVRFCDTV--GILDPFTMYELVKELVEAVDIPIEV 193 (378)
T ss_pred HHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHh-CCCCEEEEeccC--CCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 34457777888886655432111 111 33445444 799999999874 4567888888888886643 3555
Q ss_pred EcCCCCcccHHHHHHHHc
Q psy9406 89 APATIYGKNILPRVAALL 106 (312)
Q Consensus 89 ~~aT~~GrdLaprlAarL 106 (312)
=.+...|..+|--+|+-.
T Consensus 194 H~Hnd~GlA~AN~laAv~ 211 (378)
T PRK11858 194 HCHNDFGMATANALAGIE 211 (378)
T ss_pred EecCCcCHHHHHHHHHHH
Confidence 578889999999988764
No 159
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=24.14 E-value=1.1e+02 Score=27.02 Aligned_cols=46 Identities=20% Similarity=0.395 Sum_probs=32.2
Q ss_pred CceEEEEeeccchhhhccc-----CCCcEEEEEcCCCCCCcccccceEEeec
Q psy9406 253 PQLYIAIGISGAIQHLSGM-----KDSKIIVAINQDEDAPIFDISDYGLVGD 299 (312)
Q Consensus 253 P~lYia~GISGa~qH~~G~-----~~s~~IvAIN~D~~ApIf~~aDygiVgD 299 (312)
-+|.|.+|-|+++.=..++ +.-..||-||.+|. |.=+.+|+-+-+|
T Consensus 156 aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~~~-~~d~~~d~~~~~~ 206 (206)
T cd01410 156 ADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQPT-PKDKLADLVIHGD 206 (206)
T ss_pred CCEEEEECcCceehhHHHHHHHHHhcCCeEEEECCCCC-CCCccccEEEeCC
Confidence 5789999999988755554 22345777999874 4446678877664
No 160
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=23.61 E-value=1.3e+02 Score=23.81 Aligned_cols=46 Identities=24% Similarity=0.440 Sum_probs=35.0
Q ss_pred CceEEEEeeccchhhhccc------CCCcEEEEEcCCCCCCcccccceEEeec
Q psy9406 253 PQLYIAIGISGAIQHLSGM------KDSKIIVAINQDEDAPIFDISDYGLVGD 299 (312)
Q Consensus 253 P~lYia~GISGa~qH~~G~------~~s~~IvAIN~D~~ApIf~~aDygiVgD 299 (312)
.++.|++--||..+.+.-. +++ .+|+|=.+++.|+-+.||+-+.-.
T Consensus 48 ~dl~I~iS~SG~t~~~~~~~~~a~~~g~-~vi~iT~~~~s~la~~ad~~l~~~ 99 (120)
T cd05710 48 KSVVILASHSGNTKETVAAAKFAKEKGA-TVIGLTDDEDSPLAKLADYVIVYG 99 (120)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHcCC-eEEEEECCCCCcHHHhCCEEEEcc
Confidence 3799999999988755321 334 478888899999999999987543
No 161
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=23.54 E-value=4.5e+02 Score=22.19 Aligned_cols=90 Identities=17% Similarity=0.088 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCCcEEEEEEcCCch---HHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHHHh-CCcEEEEcC-
Q psy9406 17 STLNTITAATLCSDEIHILIIGYNIE---KVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVIAS-NYSHILAPA- 91 (312)
Q Consensus 17 ~slEll~~A~~Lg~~V~av~~G~~~~---~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l~~-~~~~IL~~a- 91 (312)
...+++..+.+-+ ....++|...+ .+++.+.+.|.=-++.-..++.+ +.+...+++..+.+ +||+|+++-
T Consensus 36 l~~~l~~~~~~~~--~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f---~~~~~~~i~~~I~~~~pdiv~vglG 110 (172)
T PF03808_consen 36 LFPDLLRRAEQRG--KRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYF---DEEEEEAIINRINASGPDIVFVGLG 110 (172)
T ss_pred HHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCC---ChhhHHHHHHHHHHcCCCEEEEECC
Confidence 3445555554433 46677887543 23334444343224444555544 44444555555543 689999987
Q ss_pred CCCcccHHHHHHHHcCCcee
Q psy9406 92 TIYGKNILPRVAALLNVMQI 111 (312)
Q Consensus 92 T~~GrdLaprlAarL~~~lv 111 (312)
++..-.++.+...+|+.++.
T Consensus 111 ~PkQE~~~~~~~~~l~~~v~ 130 (172)
T PF03808_consen 111 APKQERWIARHRQRLPAGVI 130 (172)
T ss_pred CCHHHHHHHHHHHHCCCCEE
Confidence 55667899999999999844
No 162
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=23.53 E-value=3.8e+02 Score=21.30 Aligned_cols=79 Identities=6% Similarity=-0.021 Sum_probs=51.8
Q ss_pred ccChHHHHHHHHHHhcCCcEEEEEEcCCchHHHHHHhhcCC----ccEEEEecCCCCCCCCHHHHHHHHHHHHhCC-cEE
Q psy9406 13 YLKTSTLNTITAATLCSDEIHILIIGYNIEKVILDAKKVNN----IKKILLVDSLYFSNNLPENIAAQISVIASNY-SHI 87 (312)
Q Consensus 13 ~l~~~slEll~~A~~Lg~~V~av~~G~~~~~~a~~~~~~~G----ad~V~~~~~~~l~~~~~e~~a~~l~~l~~~~-~~I 87 (312)
.+.+-..++|...++-+-++. ++.+......+.....+| .|.++..++-......++.|..++.++--++ +++
T Consensus 77 ~~~~~~~~~L~~l~~~~~~~~--i~Sn~~~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~~~ 154 (176)
T PF13419_consen 77 QPYPGVRELLERLKAKGIPLV--IVSNGSRERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPEEIL 154 (176)
T ss_dssp EESTTHHHHHHHHHHTTSEEE--EEESSEHHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGGEE
T ss_pred chhhhhhhhhhhcccccceeE--EeecCCcccccccccccccccccccccccchhhhhhhHHHHHHHHHHHcCCCcceEE
Confidence 556677888888876664444 444444433333333345 5678877766667778899988888873233 689
Q ss_pred EEcCCC
Q psy9406 88 LAPATI 93 (312)
Q Consensus 88 L~~aT~ 93 (312)
+++.+.
T Consensus 155 ~vgD~~ 160 (176)
T PF13419_consen 155 FVGDSP 160 (176)
T ss_dssp EEESSH
T ss_pred EEeCCH
Confidence 999888
No 163
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=23.47 E-value=2.3e+02 Score=25.54 Aligned_cols=52 Identities=10% Similarity=0.121 Sum_probs=32.6
Q ss_pred EEEEEeCCCccChHHHHHHHHHHhcCCcEEEEEEcCC--chHHHHHHhhcCCccEEEEe
Q psy9406 4 LVIAEHDNSYLKTSTLNTITAATLCSDEIHILIIGYN--IEKVILDAKKVNNIKKILLV 60 (312)
Q Consensus 4 lv~~E~~~g~l~~~slEll~~A~~Lg~~V~av~~G~~--~~~~a~~~~~~~Gad~V~~~ 60 (312)
+||.| ..|.. ...+++...++.-+.+... +|.+ ..+.++++.. +|+|.|++=
T Consensus 151 ivyLe-~SG~~--~~~e~I~~v~~~~~~~pl~-vGGGIrs~e~a~~l~~-aGAD~VVVG 204 (219)
T cd02812 151 IVYLE-YSGAY--GPPEVVRAVKKVLGDTPLI-VGGGIRSGEQAKEMAE-AGADTIVVG 204 (219)
T ss_pred EEEeC-CCCCc--CCHHHHHHHHHhcCCCCEE-EeCCCCCHHHHHHHHH-cCCCEEEEC
Confidence 68889 44443 5678888877653122333 3443 3556677776 799998764
No 164
>PRK14098 glycogen synthase; Provisional
Probab=23.33 E-value=6.3e+02 Score=25.30 Aligned_cols=81 Identities=12% Similarity=0.150 Sum_probs=50.3
Q ss_pred HHHHHHhc-CCcEEEEEEcCCch---HHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHHHhCCcEEEEcCCCCcc
Q psy9406 21 TITAATLC-SDEIHILIIGYNIE---KVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVIASNYSHILAPATIYGK 96 (312)
Q Consensus 21 ll~~A~~L-g~~V~av~~G~~~~---~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l~~~~~~IL~~aT~~Gr 96 (312)
|+.++.++ ...+..+++|.+.. +..+++.+.++ ++|.... .+. +. .+.++....|++++|+-..+.
T Consensus 325 li~a~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~-~~V~~~g-----~~~-~~---~~~~~~a~aDi~l~PS~~E~~ 394 (489)
T PRK14098 325 LAESLEKLVELDIQLVICGSGDKEYEKRFQDFAEEHP-EQVSVQT-----EFT-DA---FFHLAIAGLDMLLMPGKIESC 394 (489)
T ss_pred HHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHHHHCC-CCEEEEE-----ecC-HH---HHHHHHHhCCEEEeCCCCCCc
Confidence 44444555 23688889997642 33445444343 6666543 122 22 223333456999999988888
Q ss_pred cHHHHHHHHcCCcee
Q psy9406 97 NILPRVAALLNVMQI 111 (312)
Q Consensus 97 dLaprlAarL~~~lv 111 (312)
-+..--|.+.|++++
T Consensus 395 Gl~~lEAma~G~ppV 409 (489)
T PRK14098 395 GMLQMFAMSYGTIPV 409 (489)
T ss_pred hHHHHHHHhCCCCeE
Confidence 888888999998655
No 165
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=23.25 E-value=2.8e+02 Score=21.49 Aligned_cols=60 Identities=13% Similarity=0.063 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCcEEEEEEcCCchHHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHHHhC--CcEEEEc
Q psy9406 19 LNTITAATLCSDEIHILIIGYNIEKVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVIASN--YSHILAP 90 (312)
Q Consensus 19 lEll~~A~~Lg~~V~av~~G~~~~~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l~~~--~~~IL~~ 90 (312)
+-++..|+.+|.+|.+ .... +.-.+.+. .+|++.++..+++. +.+.+.++..+ +|+++=.
T Consensus 4 ~~a~q~ak~~G~~vi~--~~~~-~~k~~~~~-~~Ga~~~~~~~~~~--------~~~~i~~~~~~~~~d~vid~ 65 (130)
T PF00107_consen 4 LMAIQLAKAMGAKVIA--TDRS-EEKLELAK-ELGADHVIDYSDDD--------FVEQIRELTGGRGVDVVIDC 65 (130)
T ss_dssp HHHHHHHHHTTSEEEE--EESS-HHHHHHHH-HTTESEEEETTTSS--------HHHHHHHHTTTSSEEEEEES
T ss_pred HHHHHHHHHcCCEEEE--EECC-HHHHHHHH-hhcccccccccccc--------cccccccccccccceEEEEe
Confidence 4456778888844433 3333 22233333 48999887765432 56666666543 5666643
No 166
>cd03520 Link_domain_CSPGs_modules_2_4 Link_domain_CSPGs_modules_2_4; this link domain is found in the second and fourth link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan and, in the second link module of three other CSPGs: versican, neurocan, and brevican. The link domain is a hyaluronan (HA)-binding domain. CSPGs are characterized by an N-terminal globular domain (G1 domain) containing two contiguous link modules (modules 1 and 2). Both link modules of the G1 domain of aggrecan are involved in interaction with HA. Aggrecan in addition contains a second globular domain (G2) having link modules 3 and 4 which lack HA-binding activity. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggregan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and
Probab=23.06 E-value=82 Score=24.65 Aligned_cols=32 Identities=16% Similarity=0.335 Sum_probs=25.7
Q ss_pred ccchHHHHHHHHHhCCeeeecHhh----------HhcCCCCC
Q psy9406 209 SKNFKILEGLADKLNAAIGASRAA----------VDAGYISN 240 (312)
Q Consensus 209 ~e~~~~~~~LA~~lga~vg~SRp~----------vd~gw~~~ 240 (312)
+=+|..+++..+.+||.++..--+ ||.||+..
T Consensus 10 ~l~f~eA~~aC~~~ga~lAs~~QL~~Aw~~Gld~C~~GWL~D 51 (96)
T cd03520 10 KFTFQEARAECRSLGAVLATTGQLYAAWRQGLDQCDPGWLAD 51 (96)
T ss_pred CcCHHHHHHHHHHcCCEeCCHHHHHHHHHhccccccCccccc
Confidence 347889999999999999765444 78899964
No 167
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=22.76 E-value=13 Score=32.76 Aligned_cols=21 Identities=57% Similarity=1.089 Sum_probs=18.7
Q ss_pred CceeCCceEEEEee-----ccchhhh
Q psy9406 248 GKIVAPQLYIAIGI-----SGAIQHL 268 (312)
Q Consensus 248 G~~v~P~lYia~GI-----SGa~qH~ 268 (312)
|+.+-|=+||++|+ ||.+||+
T Consensus 163 g~~l~p~v~I~LGi~Il~esgti~~l 188 (191)
T PF03596_consen 163 GRWLVPIVYIGLGIYILIESGTIQHL 188 (191)
T ss_pred cccHHHHHHHHhCceeeEeCCHHHHH
Confidence 67789999999998 8999997
No 168
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=22.69 E-value=78 Score=30.39 Aligned_cols=27 Identities=19% Similarity=0.448 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCCcccccceEEeecHhH
Q psy9406 276 IIVAINQDEDAPIFDISDYGLVGDLFE 302 (312)
Q Consensus 276 ~IvAIN~D~~ApIf~~aDygiVgD~~~ 302 (312)
.++.++.+|++|-+++||.-++.|..+
T Consensus 37 ~v~~~~~~~~~~~~~~ad~~~~~~~~d 63 (395)
T PRK09288 37 EVIAVDRYANAPAMQVAHRSHVIDMLD 63 (395)
T ss_pred EEEEEeCCCCCchHHhhhheEECCCCC
Confidence 577899999999999999887765443
No 169
>PLN02334 ribulose-phosphate 3-epimerase
Probab=22.59 E-value=4.6e+02 Score=23.17 Aligned_cols=68 Identities=13% Similarity=0.047 Sum_probs=43.9
Q ss_pred ccChHHHHHHHHHHhcCCcEEEEEEcCCchHHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHHHh
Q psy9406 13 YLKTSTLNTITAATLCSDEIHILIIGYNIEKVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVIAS 82 (312)
Q Consensus 13 ~l~~~slEll~~A~~Lg~~V~av~~G~~~~~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l~~ 82 (312)
...+..++.+...+++-.++..++.|.-..+-..++.+ .|+|-+.+.. ..+...+++..++.+.+..+
T Consensus 156 ~~~~~~~~~i~~~~~~~~~~~I~a~GGI~~e~i~~l~~-aGad~vvvgs-ai~~~~d~~~~~~~l~~~~~ 223 (229)
T PLN02334 156 SFIPSMMDKVRALRKKYPELDIEVDGGVGPSTIDKAAE-AGANVIVAGS-AVFGAPDYAEVISGLRASVE 223 (229)
T ss_pred ccCHHHHHHHHHHHHhCCCCcEEEeCCCCHHHHHHHHH-cCCCEEEECh-HHhCCCCHHHHHHHHHHHHH
Confidence 46678888998888874344566677655555567776 7999776654 34554566655555555443
No 170
>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein. These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).
Probab=22.56 E-value=39 Score=29.86 Aligned_cols=22 Identities=32% Similarity=0.661 Sum_probs=19.6
Q ss_pred CceeCCceEEEEee-----ccchhhhc
Q psy9406 248 GKIVAPQLYIAIGI-----SGAIQHLS 269 (312)
Q Consensus 248 G~~v~P~lYia~GI-----SGa~qH~~ 269 (312)
|+.+-|-+||.+|+ ||.+||+-
T Consensus 163 g~~lvp~VlIgLGi~Il~esg~~~~l~ 189 (193)
T TIGR00779 163 SRWIMPIVFIGLGIYIIIENDTIQALL 189 (193)
T ss_pred CCeeeeeeEhhcCeeeeEeCCHHHHHH
Confidence 68899999999998 89999964
No 171
>PLN02321 2-isopropylmalate synthase
Probab=22.49 E-value=9.2e+02 Score=25.37 Aligned_cols=93 Identities=14% Similarity=0.079 Sum_probs=59.1
Q ss_pred HHHHHHHHHhcCCcEEEEEEcCC-----c----hHHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHHHhCC----
Q psy9406 18 TLNTITAATLCSDEIHILIIGYN-----I----EKVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVIASNY---- 84 (312)
Q Consensus 18 slEll~~A~~Lg~~V~av~~G~~-----~----~~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l~~~~---- 84 (312)
..+.+..|++++.. .+.++.+ . .+.++.+.. .|+|.+.++|.- ....|+.+.+.+..+.+..
T Consensus 212 ~~~~V~~Ak~~G~~--~v~fs~EDa~rtd~d~l~~~~~~a~~-aGa~~I~L~DTv--G~~~P~~v~~li~~l~~~~~~~~ 286 (632)
T PLN02321 212 ARDMVKYARSLGCE--DVEFSPEDAGRSDPEFLYRILGEVIK-AGATTLNIPDTV--GYTLPSEFGQLIADIKANTPGIE 286 (632)
T ss_pred HHHHHHHHHHcCCc--eEEEecccCCCCCHHHHHHHHHHHHH-cCCCEEEecccc--cCCCHHHHHHHHHHHHHhcCCCC
Confidence 45566677777643 2233432 1 134555555 799999999874 4567889999998886642
Q ss_pred c--EEEEcCCCCcccHHHHHHHHcCCceeeeEE
Q psy9406 85 S--HILAPATIYGKNILPRVAALLNVMQISEIT 115 (312)
Q Consensus 85 ~--~IL~~aT~~GrdLaprlAarL~~~lvadv~ 115 (312)
+ +=+=.+..+|..+|--+|+-....-.-||+
T Consensus 287 ~v~i~vH~HND~GlAvANslaAv~AGA~~Vd~T 319 (632)
T PLN02321 287 NVIISTHCQNDLGLSTANTLAGAHAGARQVEVT 319 (632)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 2 333366788999998887754443333444
No 172
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=22.44 E-value=1.3e+02 Score=25.47 Aligned_cols=89 Identities=20% Similarity=0.219 Sum_probs=57.1
Q ss_pred CCCCcEEEEeCccCCCccchHHHHHHHHHhCCeeee-cHhhHhcCCCCCCeEeccCCcee-CCceEEEEeeccchhhhcc
Q psy9406 193 LTSAKIVVAGGRGLGSSKNFKILEGLADKLNAAIGA-SRAAVDAGYISNNLQIGQTGKIV-APQLYIAIGISGAIQHLSG 270 (312)
Q Consensus 193 l~~A~vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~-SRp~vd~gw~~~~~qIG~sG~~v-~P~lYia~GISGa~qH~~G 270 (312)
|.+|+.|...|.|.. ..+++.++..|- .+|- +....| +. . ..+ +-++.|++-.||....+.=
T Consensus 27 l~~a~~I~i~G~G~S----~~~A~~~~~~l~-~~g~~~~~~~~--~~--------~-~~~~~~Dv~I~iS~sG~t~~~i~ 90 (179)
T TIGR03127 27 IIKAKRIFVAGAGRS----GLVGKAFAMRLM-HLGFNVYVVGE--TT--------T-PSIKKGDLLIAISGSGETESLVT 90 (179)
T ss_pred HHhCCEEEEEecCHH----HHHHHHHHHHHH-hCCCeEEEeCC--cc--------c-CCCCCCCEEEEEeCCCCcHHHHH
Confidence 457889999998843 346677777662 1110 001111 10 1 234 3479999999998775532
Q ss_pred c------CCCcEEEEEcCCCCCCcccccceEEee
Q psy9406 271 M------KDSKIIVAINQDEDAPIFDISDYGLVG 298 (312)
Q Consensus 271 ~------~~s~~IvAIN~D~~ApIf~~aDygiVg 298 (312)
+ ++++ ||+|=.+++.|+-+.||+-+.-
T Consensus 91 ~~~~ak~~g~~-ii~IT~~~~s~la~~ad~~l~~ 123 (179)
T TIGR03127 91 VAKKAKEIGAT-VAAITTNPESTLGKLADVVVEI 123 (179)
T ss_pred HHHHHHHCCCe-EEEEECCCCCchHHhCCEEEEe
Confidence 2 3343 7789889999999999998854
No 173
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=22.22 E-value=5e+02 Score=22.87 Aligned_cols=32 Identities=16% Similarity=0.178 Sum_probs=23.5
Q ss_pred EEEEEEcCCc--hHHHHHHhhcCCccEEEEecCCC
Q psy9406 32 IHILIIGYNI--EKVILDAKKVNNIKKILLVDSLY 64 (312)
Q Consensus 32 V~av~~G~~~--~~~a~~~~~~~Gad~V~~~~~~~ 64 (312)
-.++++|.+. ...++.+.. .|+.++.++|++.
T Consensus 29 ~~V~ViG~GglGs~ia~~La~-~Gvg~i~lvD~D~ 62 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALAR-SGVGNLKLVDFDV 62 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHH-cCCCeEEEEeCCE
Confidence 3566777653 567777776 8999999998764
No 174
>cd03515 Link_domain_TSG_6_like This is the extracellular link domain of the type found in human TSG-6. The link domain is a hyaluronan (HA)-binding domain. TSG-6 is the protein product of tumor necrosis factor-stimulated gene-6. TSG-6 is up-regulated in inflammatory lesions and in the ovary during ovulation. It has a strong anti-inflammatory and chondroprotective effect in models of acute inflammation and autoimmune arthritis and plays an essential role in female fertility. Also included in this group are the stabilins: stabilin-1 (FEEL-1, CLEVER-1) and stabilin-2 (FEEL-2). Stabilin-2 functions as the major liver and lymph node-scavenging receptor for HA and related glycosaminoglycans. Stabilin-2 is a scavenger receptor with a broad range of ligands including advanced glycation end (AGE) products, acetylated low density lipoprotein and procollagen peptides. In contrast, stabilin-1 does not bind HA, but binds acetylated low density lipoprotein and AGEs with lower affinity. As AGEs accum
Probab=22.16 E-value=80 Score=24.57 Aligned_cols=32 Identities=9% Similarity=0.212 Sum_probs=25.9
Q ss_pred ccchHHHHHHHHHhCCeeeecHhh----------HhcCCCCC
Q psy9406 209 SKNFKILEGLADKLNAAIGASRAA----------VDAGYISN 240 (312)
Q Consensus 209 ~e~~~~~~~LA~~lga~vg~SRp~----------vd~gw~~~ 240 (312)
+=||..+++..+..||.++..--+ ||.||+..
T Consensus 13 ~l~f~eA~~aC~~~ga~lAs~~QL~~Aw~~G~d~C~~GWL~D 54 (93)
T cd03515 13 KLTYTEAKAACEAEGAHLATYSQLSAAQQLGFHLCAAGWLAK 54 (93)
T ss_pred ccCHHHHHHHHHHcCCccCCHHHHHHHHHcCccccCcccccC
Confidence 458899999999999999765443 78899974
No 175
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=22.11 E-value=4.2e+02 Score=21.25 Aligned_cols=63 Identities=14% Similarity=0.079 Sum_probs=39.6
Q ss_pred HHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHHHhCCcEEEE-cCCCCc-ccHHHHHHHHcCCcee
Q psy9406 45 ILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVIASNYSHILA-PATIYG-KNILPRVAALLNVMQI 111 (312)
Q Consensus 45 a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l~~~~~~IL~-~aT~~G-rdLaprlAarL~~~lv 111 (312)
..++...+|.+-.+..- -.-+.+...+.+.++.+++|+|+. |.|..| +|+.+..-.+++-..+
T Consensus 24 l~~~l~~~G~~v~~~~~----v~Dd~~~i~~~i~~~~~~~DlvittGG~g~g~~D~t~~ai~~~g~~~~ 88 (133)
T cd00758 24 LEALLEDLGCEVIYAGV----VPDDADSIRAALIEASREADLVLTTGGTGVGRRDVTPEALAELGEREA 88 (133)
T ss_pred HHHHHHHCCCEEEEeee----cCCCHHHHHHHHHHHHhcCCEEEECCCCCCCCCcchHHHHHHhcCEEe
Confidence 34444447765333211 122467778888888777897777 456665 7999998888874333
No 176
>PRK07143 hypothetical protein; Provisional
Probab=21.72 E-value=6.6e+02 Score=23.39 Aligned_cols=80 Identities=19% Similarity=0.203 Sum_probs=53.2
Q ss_pred cChHHHHHHHHHHhcCCcEEEEEEcCCc-------------hHHHHHHhhcCCccEEEEecC-CCCCCCCHHHHHHHHHH
Q psy9406 14 LKTSTLNTITAATLCSDEIHILIIGYNI-------------EKVILDAKKVNNIKKILLVDS-LYFSNNLPENIAAQISV 79 (312)
Q Consensus 14 l~~~slEll~~A~~Lg~~V~av~~G~~~-------------~~~a~~~~~~~Gad~V~~~~~-~~l~~~~~e~~a~~l~~ 79 (312)
++.-=..|+..|++.+.+..++.+.+.. ++-.+.+. .+|+|.+++++- +.+....++.+.+-+.+
T Consensus 27 vH~GHq~Ll~~a~~~~~~~vV~tF~~P~~~~~~~~~~l~~~~er~~~l~-~~Gvd~~~~~~F~~~~a~ls~e~Fi~~ll~ 105 (279)
T PRK07143 27 FHLGHLELFKKAKESNDEIVIVIFKNPENLPKNTNKKFSDLNSRLQTLA-NLGFKNIILLDFNEELQNLSGNDFIEKLTK 105 (279)
T ss_pred CCHHHHHHHHHHHHCCCcEEEEEeCChHHhcccCcccCCCHHHHHHHHH-HCCCCEEEEeCCCHHHhCCCHHHHHHHHHh
Confidence 4555568899999887666665553211 12233344 489999999974 36788889988876544
Q ss_pred HHhCCcEEEEcCCCC-cc
Q psy9406 80 IASNYSHILAPATIY-GK 96 (312)
Q Consensus 80 l~~~~~~IL~~aT~~-Gr 96 (312)
-.++.|++|..-+ |+
T Consensus 106 --l~~~~iVvG~Df~FG~ 121 (279)
T PRK07143 106 --NQVSFFVVGKDFRFGK 121 (279)
T ss_pred --cCCCEEEECCCcccCC
Confidence 3567888887554 53
No 177
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=21.71 E-value=1.4e+02 Score=23.38 Aligned_cols=48 Identities=29% Similarity=0.226 Sum_probs=35.9
Q ss_pred CCceEEEEeeccchhhhc------ccCCCcEEEEEcCCCCCCcccccceEEeecH
Q psy9406 252 APQLYIAIGISGAIQHLS------GMKDSKIIVAINQDEDAPIFDISDYGLVGDL 300 (312)
Q Consensus 252 ~P~lYia~GISGa~qH~~------G~~~s~~IvAIN~D~~ApIf~~aDygiVgD~ 300 (312)
+.++.|++--||..+-+. --++++ ||+|=.+++.|+-+.||+-+.-..
T Consensus 46 ~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~-vi~iT~~~~s~la~~ad~~l~~~~ 99 (126)
T cd05008 46 EDTLVIAISQSGETADTLAALRLAKEKGAK-TVAITNVVGSTLAREADYVLYLRA 99 (126)
T ss_pred CCcEEEEEeCCcCCHHHHHHHHHHHHcCCe-EEEEECCCCChHHHhCCEEEEecC
Confidence 457999999999877432 224444 677777799999999999886544
No 178
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=21.67 E-value=60 Score=29.34 Aligned_cols=49 Identities=22% Similarity=0.346 Sum_probs=36.9
Q ss_pred cEEEEeCccCCCccchHHHHHHHHHhCC--------eeeecHhhH------hcCCCCCCeEec
Q psy9406 197 KIVVAGGRGLGSSKNFKILEGLADKLNA--------AIGASRAAV------DAGYISNNLQIG 245 (312)
Q Consensus 197 ~vvV~~GrG~~~~e~~~~~~~LA~~lga--------~vg~SRp~v------d~gw~~~~~qIG 245 (312)
+.=||+|-|-|++..|+++-++|..+.- .+|.||.+. =++.+++.-|+|
T Consensus 55 ~~avSVGLGaGdp~Q~~~Va~Ia~~~~P~HVNQvFtgag~sr~~Lg~~~T~vN~LvsPTG~~G 117 (236)
T TIGR03581 55 DNAVSVGLGAGDPNQSAMVADISAHTQPQHINQVFTGVGTSRALLGQADTVINGLVSPTGTPG 117 (236)
T ss_pred CCceEEecCCCCHHHHHHHHHHHHHcCCccccccccchHHHHHHhCCccceEEEeecCCCccc
Confidence 3349999999999999999999999963 578999876 224455544444
No 179
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=21.24 E-value=2.4e+02 Score=29.05 Aligned_cols=96 Identities=19% Similarity=0.145 Sum_probs=58.2
Q ss_pred CCCCcEEEEeCccCCCccchHHHHHHHHHhCCeeeec-HhhHhcCCCCCCeEeccCCcee-CCceEEEEeeccchhhhcc
Q psy9406 193 LTSAKIVVAGGRGLGSSKNFKILEGLADKLNAAIGAS-RAAVDAGYISNNLQIGQTGKIV-APQLYIAIGISGAIQHLSG 270 (312)
Q Consensus 193 l~~A~vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~S-Rp~vd~gw~~~~~qIG~sG~~v-~P~lYia~GISGa~qH~~G 270 (312)
+.+++.|+-.|.|-..- .-..++.+...+.. +++. -+.-+..+ ..... +.+|.|++--||....+.-
T Consensus 288 l~~~~~I~~~G~GsS~~-aa~~a~~~~~~~~~-i~~~~~~~~~~~~---------~~~~~~~~dlvI~iS~SG~T~e~v~ 356 (607)
T TIGR01135 288 LKNVDRIQIVACGTSYH-AGLVAKYLIERLAG-IPVEVEIASEFRY---------RKPVVDKDTLVIAISQSGETADTLA 356 (607)
T ss_pred hccCCEEEEEEeechHH-HHHHHHHHHHHhcC-CCEEEecHHHHhh---------cCCCCCCCCEEEEEeCCCCCHHHHH
Confidence 67789999999995421 12244555555532 2221 11111111 11122 4579999999998875521
Q ss_pred c------CCCcEEEEEcCCCCCCcccccceEEeecH
Q psy9406 271 M------KDSKIIVAINQDEDAPIFDISDYGLVGDL 300 (312)
Q Consensus 271 ~------~~s~~IvAIN~D~~ApIf~~aDygiVgD~ 300 (312)
. +++ .+|+|=++++.|+-+.|||.+.-..
T Consensus 357 a~~~ak~~ga-~~IaIT~~~~S~La~~ad~~l~~~~ 391 (607)
T TIGR01135 357 ALRLAKELGA-KTLGICNVPGSTLVRESDHTLYTRA 391 (607)
T ss_pred HHHHHHHcCC-cEEEEECCCCChHHhhcCceEEecC
Confidence 1 234 3788999999999999999888543
No 180
>PF12812 PDZ_1: PDZ-like domain
Probab=21.23 E-value=2.5e+02 Score=20.76 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=23.1
Q ss_pred eEEEEeeccchhhhcccCCCcEEEEEcCCC
Q psy9406 255 LYIAIGISGAIQHLSGMKDSKIIVAINQDE 284 (312)
Q Consensus 255 lYia~GISGa~qH~~G~~~s~~IvAIN~D~ 284 (312)
+|+..=-+|..+|-.|+..--+|-.||.-|
T Consensus 32 gv~v~~~~g~~~~~~~i~~g~iI~~Vn~kp 61 (78)
T PF12812_consen 32 GVYVAVSGGSLAFAGGISKGFIITSVNGKP 61 (78)
T ss_pred EEEEEecCCChhhhCCCCCCeEEEeECCcC
Confidence 444444699999998898777777999866
No 181
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=21.23 E-value=1.1e+02 Score=27.19 Aligned_cols=45 Identities=24% Similarity=0.366 Sum_probs=31.0
Q ss_pred CceEEEEeeccchhhhccc-----CCCcEEEEEcCCCCCCcccccceEEee
Q psy9406 253 PQLYIAIGISGAIQHLSGM-----KDSKIIVAINQDEDAPIFDISDYGLVG 298 (312)
Q Consensus 253 P~lYia~GISGa~qH~~G~-----~~s~~IvAIN~D~~ApIf~~aDygiVg 298 (312)
.+|.|.+|-|+++.-...+ +.-..+|-||.+|. |.-+.+|+-|-+
T Consensus 172 ~Dl~lvvGTSl~V~p~~~l~~~a~~~g~~~i~iN~~~~-~~~~~~~~~i~~ 221 (222)
T cd01413 172 ADLFIVLGSSLVVYPANLLPLIAKENGAKLVIVNADET-PFDYIADLVIQD 221 (222)
T ss_pred CCEEEEEccCCEeccHhHHHHHHHHcCCeEEEEcCCCC-CCCcceeEEEeC
Confidence 4788899999888755542 22345778999985 666667876643
No 182
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=20.87 E-value=1e+02 Score=21.21 Aligned_cols=31 Identities=16% Similarity=0.276 Sum_probs=25.4
Q ss_pred CceEEEEeeccchhhhcccCCCcEEEEEcCC
Q psy9406 253 PQLYIAIGISGAIQHLSGMKDSKIIVAINQD 283 (312)
Q Consensus 253 P~lYia~GISGa~qH~~G~~~s~~IvAIN~D 283 (312)
+.++|.-=..|+.-+.+|++--|.|++||..
T Consensus 13 ~~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~ 43 (70)
T cd00136 13 GGVVVLSVEPGSPAERAGLQAGDVILAVNGT 43 (70)
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCEEEEECCE
Confidence 3567765567888888999999999999976
No 183
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=20.67 E-value=5.9e+02 Score=23.09 Aligned_cols=81 Identities=11% Similarity=0.054 Sum_probs=48.0
Q ss_pred ccChHHHHHHHHHHhcCCcEEEEEEcCCchHHHHHHhhcCCc----cEEEEecCCCCCCCCHHHHHHHHHHHHhCC-cEE
Q psy9406 13 YLKTSTLNTITAATLCSDEIHILIIGYNIEKVILDAKKVNNI----KKILLVDSLYFSNNLPENIAAQISVIASNY-SHI 87 (312)
Q Consensus 13 ~l~~~slEll~~A~~Lg~~V~av~~G~~~~~~a~~~~~~~Ga----d~V~~~~~~~l~~~~~e~~a~~l~~l~~~~-~~I 87 (312)
.+.+-..|+|...++.|-++. ++.+.....++...+.+|. |.++..++-......++.|..++..+--++ +++
T Consensus 109 ~l~pg~~e~L~~L~~~g~~l~--I~Tn~~~~~~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~~l 186 (260)
T PLN03243 109 RLRPGSREFVQALKKHEIPIA--VASTRPRRYLERAIEAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAERLGFIPERCI 186 (260)
T ss_pred ccCCCHHHHHHHHHHCCCEEE--EEeCcCHHHHHHHHHHcCCHhhCcEEEecccCCCCCCCHHHHHHHHHHhCCChHHeE
Confidence 355667778877777653333 3333333333333333454 556666654456778888888887763334 588
Q ss_pred EEcCCCCc
Q psy9406 88 LAPATIYG 95 (312)
Q Consensus 88 L~~aT~~G 95 (312)
+++.|..+
T Consensus 187 ~IgDs~~D 194 (260)
T PLN03243 187 VFGNSNSS 194 (260)
T ss_pred EEcCCHHH
Confidence 88888653
No 184
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=20.60 E-value=94 Score=26.21 Aligned_cols=62 Identities=11% Similarity=0.143 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhCCcEEEEcCCCCcccHHHHHHHHcCCceeeeEEEeeC----CCeEEEEccCceEE
Q psy9406 72 NIAAQISVIASNYSHILAPATIYGKNILPRVAALLNVMQISEITKVCN----PSTFERPIYSGRII 133 (312)
Q Consensus 72 ~~a~~l~~l~~~~~~IL~~aT~~GrdLaprlAarL~~~lvadv~~l~~----~~~~~R~~ygG~~~ 133 (312)
..++...+++++.+.|++.+++.-..++..|..+.+.-++|+-..+-. .....--+-||.+.
T Consensus 8 ~IA~~A~~~I~~~~~Ifld~GtT~~~la~~L~~~~~ltVvTnsl~ia~~l~~~~~~~vi~~GG~~~ 73 (161)
T PF00455_consen 8 AIARKAASLIEDGDTIFLDSGTTTLELAKYLPDKKNLTVVTNSLPIANELSENPNIEVILLGGEVN 73 (161)
T ss_pred HHHHHHHHhCCCCCEEEEECchHHHHHHHHhhcCCceEEEECCHHHHHHHHhcCceEEEEeCCEEE
Confidence 456666777777899999999999999999999998888888665421 11233345566554
No 185
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=20.46 E-value=2.2e+02 Score=29.27 Aligned_cols=96 Identities=22% Similarity=0.138 Sum_probs=57.0
Q ss_pred CCCCcEEEEeCccCCCccchHHHHHHHHHhCCeeeec-HhhHhcCCCCCCeEeccCCceeCCceEEEEeeccchhhhc--
Q psy9406 193 LTSAKIVVAGGRGLGSSKNFKILEGLADKLNAAIGAS-RAAVDAGYISNNLQIGQTGKIVAPQLYIAIGISGAIQHLS-- 269 (312)
Q Consensus 193 l~~A~vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~S-Rp~vd~gw~~~~~qIG~sG~~v~P~lYia~GISGa~qH~~-- 269 (312)
|.+++.|+-.|.| .+--....++.+...++. ++++ .+.-+..+ .....=+.+|.|++--||...-+.
T Consensus 286 l~~a~~I~~~G~G-sS~~aa~~a~~~~~~~~~-~~~~~~~~~~~~~--------~~~~~~~~dlvI~iS~SG~T~e~i~a 355 (604)
T PRK00331 286 LKKIDRIYIVACG-TSYHAGLVAKYLIESLAG-IPVEVEIASEFRY--------RDPVLSPKTLVIAISQSGETADTLAA 355 (604)
T ss_pred HhcCCEEEEEEee-cHHHHHHHHHHHHHHHcC-CCEEEEehhhhhc--------cCCCCCCCeEEEEEcCCCCCHHHHHH
Confidence 4678999999999 332223355555566542 2221 11111111 111222457999999999876431
Q ss_pred ----ccCCCcEEEEEcCCCCCCcccccceEEeec
Q psy9406 270 ----GMKDSKIIVAINQDEDAPIFDISDYGLVGD 299 (312)
Q Consensus 270 ----G~~~s~~IvAIN~D~~ApIf~~aDygiVgD 299 (312)
=-+++. +|+|=++++.|+-+.||+.+.-.
T Consensus 356 ~~~ak~~ga~-~IaIT~~~~S~La~~aD~~l~~~ 388 (604)
T PRK00331 356 LRLAKELGAK-TLAICNVPGSTIARESDAVLYTH 388 (604)
T ss_pred HHHHHHCCCC-EEEEECCCCChhHHhcCcEEEec
Confidence 112444 67788889999999999988744
No 186
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=20.41 E-value=7.7e+02 Score=23.67 Aligned_cols=89 Identities=12% Similarity=0.121 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHhcCCcEEEEEEcC--Cc-h---HHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHHHHHhCCc--EE
Q psy9406 16 TSTLNTITAATLCSDEIHILIIGY--NI-E---KVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQISVIASNYS--HI 87 (312)
Q Consensus 16 ~~slEll~~A~~Lg~~V~av~~G~--~~-~---~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~~l~~~~~--~I 87 (312)
+...+.+..|++.|-+|..-..-. .. + +.++++.. +|+|+++++|.- ....|+...+.+..+.+..+ +=
T Consensus 112 ~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~-~g~~~i~l~DT~--G~~~P~~v~~li~~l~~~~~~~l~ 188 (363)
T TIGR02090 112 EKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEE-AGADRINIADTV--GVLTPQKMEELIKKLKENVKLPIS 188 (363)
T ss_pred HHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHh-CCCCEEEEeCCC--CccCHHHHHHHHHHHhcccCceEE
Confidence 345577778888886665433221 11 2 33445554 799999999874 55678888888888866443 33
Q ss_pred EEcCCCCcccHHHHHHHHcC
Q psy9406 88 LAPATIYGKNILPRVAALLN 107 (312)
Q Consensus 88 L~~aT~~GrdLaprlAarL~ 107 (312)
+=.+...|..+|--+++-..
T Consensus 189 ~H~Hnd~GlA~AN~laA~~a 208 (363)
T TIGR02090 189 VHCHNDFGLATANSIAGVKA 208 (363)
T ss_pred EEecCCCChHHHHHHHHHHC
Confidence 44678889999998877654
No 187
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=20.28 E-value=6.8e+02 Score=24.09 Aligned_cols=65 Identities=14% Similarity=0.166 Sum_probs=37.8
Q ss_pred HHHHHhcC--CcEEEEEEcCCc--hHHHHHHhhcCCccEEEEecCCCCCCCCHHHHHHHHH---HHHhCCcEEEEcC
Q psy9406 22 ITAATLCS--DEIHILIIGYNI--EKVILDAKKVNNIKKILLVDSLYFSNNLPENIAAQIS---VIASNYSHILAPA 91 (312)
Q Consensus 22 l~~A~~Lg--~~V~av~~G~~~--~~~a~~~~~~~Gad~V~~~~~~~l~~~~~e~~a~~l~---~l~~~~~~IL~~a 91 (312)
+..+++++ ..-.++++|.+. +..++.+.+ .|+.++++++-. +. ...|.+... +...++|+|+.++
T Consensus 163 v~~~~~~~~l~~k~vLvIGaGem~~l~a~~L~~-~g~~~i~v~nRt-~~---~~~~~~~~~~~~~~~~~~DvVIs~t 234 (338)
T PRK00676 163 QQELRRRQKSKKASLLFIGYSEINRKVAYYLQR-QGYSRITFCSRQ-QL---TLPYRTVVREELSFQDPYDVIFFGS 234 (338)
T ss_pred HHHHHHhCCccCCEEEEEcccHHHHHHHHHHHH-cCCCEEEEEcCC-cc---ccchhhhhhhhhhcccCCCEEEEcC
Confidence 34455554 345888999764 445666665 799999888532 11 222332211 2234679998764
No 188
>cd01102 Link_Domain The link domain is a hyaluronan (HA)-binding domain. It functions to mediate adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It is found in the CD44 receptor and in human TSG-6. TSG-6 is the protein product of the tumor necrosis factor-stimulated gene-6. TSG-6 has a strong anti-inflammatory effect in models of acute inflammation and autoimmune arthritis and plays an essential role in female fertility. This group also contains the link domains of the chondroitin sulfate proteoglycan core proteins (CSPG) including aggrecan, versican, neurocan, and brevican and the link domains of the vertebrate HAPLN (HA and proteoglycan binding link) protein family. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggregates in which other CSPGs substitute for aggregan might contribute to the structural integrity of many different tissues. Members of
Probab=20.26 E-value=99 Score=23.97 Aligned_cols=32 Identities=13% Similarity=0.180 Sum_probs=25.6
Q ss_pred ccchHHHHHHHHHhCCeeeecHhh----------HhcCCCCC
Q psy9406 209 SKNFKILEGLADKLNAAIGASRAA----------VDAGYISN 240 (312)
Q Consensus 209 ~e~~~~~~~LA~~lga~vg~SRp~----------vd~gw~~~ 240 (312)
+=||..+++..+.+||.++..=-+ ||.||+..
T Consensus 13 ~l~f~eA~~aC~~~ga~lAs~~QL~~Aw~~G~~~C~~GWL~D 54 (92)
T cd01102 13 KLTFAEAALACKARGAHLATPGQLEAAWQDGFDVCTAGWLAD 54 (92)
T ss_pred ccCHHHHHHHHHHcCCEeCCHHHHHHHHHcchhhcCCccccC
Confidence 458899999999999999754333 78899974
No 189
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=20.16 E-value=3.8e+02 Score=22.08 Aligned_cols=79 Identities=11% Similarity=-0.030 Sum_probs=45.5
Q ss_pred ccChHHHHHHHHHHhcCCcEEEEEEcCCchHHHHHHhhcCC----ccEEEEecCCCCCCCCHHHHHHHHHHHHhCC-cEE
Q psy9406 13 YLKTSTLNTITAATLCSDEIHILIIGYNIEKVILDAKKVNN----IKKILLVDSLYFSNNLPENIAAQISVIASNY-SHI 87 (312)
Q Consensus 13 ~l~~~slEll~~A~~Lg~~V~av~~G~~~~~~a~~~~~~~G----ad~V~~~~~~~l~~~~~e~~a~~l~~l~~~~-~~I 87 (312)
.+.|-..|+|..-++.+-.+.++.-+..... .....| .|.++..++-....+.++.|..++.++--++ +++
T Consensus 87 ~~~pg~~~~L~~L~~~g~~~~i~s~~~~~~~----~l~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~v 162 (185)
T TIGR01990 87 DVLPGIKNLLDDLKKNNIKIALASASKNAPT----VLEKLGLIDYFDAIVDPAEIKKGKPDPEIFLAAAEGLGVSPSECI 162 (185)
T ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCccHHH----HHHhcCcHhhCcEEEehhhcCCCCCChHHHHHHHHHcCCCHHHeE
Confidence 4566677888777766644443332222221 222244 3555555544455678888888887763233 588
Q ss_pred EEcCCCCc
Q psy9406 88 LAPATIYG 95 (312)
Q Consensus 88 L~~aT~~G 95 (312)
+++.|..+
T Consensus 163 ~vgD~~~d 170 (185)
T TIGR01990 163 GIEDAQAG 170 (185)
T ss_pred EEecCHHH
Confidence 88988643
No 190
>PRK13938 phosphoheptose isomerase; Provisional
Probab=20.09 E-value=1.7e+02 Score=25.74 Aligned_cols=98 Identities=14% Similarity=0.139 Sum_probs=60.5
Q ss_pred CCCCcEEEEeCccCCCccchHHHHHHHHHhCCeeeecHhh------HhcCCC-----------C-CCeEeccCCceeCCc
Q psy9406 193 LTSAKIVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAA------VDAGYI-----------S-NNLQIGQTGKIVAPQ 254 (312)
Q Consensus 193 l~~A~vvV~~GrG~~~~e~~~~~~~LA~~lga~vg~SRp~------vd~gw~-----------~-~~~qIG~sG~~v~P~ 254 (312)
|.+...|+..|.|= .-...+.++..|-...+--||. ...++. . ..+|+ ....=+.+
T Consensus 42 l~~g~rI~i~G~G~----S~~~A~~fa~~L~~~~~~~r~~lg~~~l~~~~~~~~a~~nd~~~~~~~~~~~--~~~~~~~D 115 (196)
T PRK13938 42 YRAGARVFMCGNGG----SAADAQHFAAELTGHLIFDRPPLGAEALHANSSHLTAVANDYDYDTVFARAL--EGSARPGD 115 (196)
T ss_pred HHCCCEEEEEeCcH----HHHHHHHHHHHcCCCccCCcCccceEEEeCChHHHHHhhccccHHHHHHHHH--HhcCCCCC
Confidence 55678888888773 2346778888776554445542 111111 0 00111 12333457
Q ss_pred eEEEEeeccchhhhccc------CCCcEEEEEcCCCCCCcccccceEEe
Q psy9406 255 LYIAIGISGAIQHLSGM------KDSKIIVAINQDEDAPIFDISDYGLV 297 (312)
Q Consensus 255 lYia~GISGa~qH~~G~------~~s~~IvAIN~D~~ApIf~~aDygiV 297 (312)
+.|++--||....+.-+ ++. .+|+|=.+++.|+.+.||+-+.
T Consensus 116 llI~iS~SG~t~~vi~a~~~Ak~~G~-~vI~iT~~~~s~La~~aD~~l~ 163 (196)
T PRK13938 116 TLFAISTSGNSMSVLRAAKTARELGV-TVVAMTGESGGQLAEFADFLIN 163 (196)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCCC-EEEEEeCCCCChhhhhCCEEEE
Confidence 99999999977654221 233 3788988999999999999885
Done!