RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9406
(312 letters)
>1efv_A Electron transfer flavoprotein; electron transport, glutaric
acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens}
SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Length = 315
Score = 469 bits (1210), Expect = e-168
Identities = 159/314 (50%), Positives = 211/314 (67%), Gaps = 4/314 (1%)
Query: 1 MPALVIAEHDNSYLKTSTLNTITAATLCSDEIHILIIGYNIEKVILDAKKVNNIKKILLV 60
LVIAEH N L TLNTITAAT E+ L+ G +KV D KV I K+L+
Sbjct: 2 QSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAGIAKVLVA 61
Query: 61 DSLYFSNNLPENIAAQISVIAS--NYSHILAPATIYGKNILPRVAALLNVMQISEITKVC 118
+ LPE + I NY+HI A A+ +GKN+LPRVAA L V IS+I +
Sbjct: 62 QHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDIIAIK 121
Query: 119 NPSTFERPIYSGRIIATVQSTDIIKVITVRATNFISAKKEGNKAIIHIISKINYFSNTAS 178
+P TF R IY+G + TV+ + +KV +VR T+F +A G A S + S
Sbjct: 122 SPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSGGSASSEKASSTS--PVEIS 179
Query: 179 IFISRELIKSKRPELTSAKIVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYI 238
++ ++L KS RPELT AK+VV+GGRGL S +NFK+L LAD+L+AA+GASRAAVDAG++
Sbjct: 180 EWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDAGFV 239
Query: 239 SNNLQIGQTGKIVAPQLYIAIGISGAIQHLSGMKDSKIIVAINQDEDAPIFDISDYGLVG 298
N++Q+GQTGKIVAP+LYIA+GISGAIQHL+GMKDSK IVAIN+D +APIF ++DYG+V
Sbjct: 240 PNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVADYGIVA 299
Query: 299 DLFEIIPKFIKYLN 312
DLF+++P+ + L
Sbjct: 300 DLFKVVPEMTEILK 313
>1efp_A ETF, protein (electron transfer flavoprotein); electron transport,
glutaric acidemia type II; HET: FAD AMP; 2.60A
{Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2
Length = 307
Score = 464 bits (1196), Expect = e-166
Identities = 147/308 (47%), Positives = 208/308 (67%), Gaps = 3/308 (0%)
Query: 4 LVIAEHDNSYLKTSTLNTITAATLCSDEIHILIIGYNIEKVILDAKKVNNIKKILLVDSL 63
L++ E N L AA ++ +L G + + +A K+ + K+L+ +
Sbjct: 3 LLLGEVTNGALNRDATAKAVAAVKALGDVTVLCAGASAKAAAEEAAKIAGVAKVLVAEDA 62
Query: 64 YFSNNLPENIAAQISVIASNYSHILAPATIYGKNILPRVAALLNVMQISEITKVCNPSTF 123
+ + L E AA I +A +YSHI APAT KN++PRVAALL+VM +S+++ + + TF
Sbjct: 63 LYGHRLAEPTAALIVGLAGDYSHIAAPATTDAKNVMPRVAALLDVMVLSDVSAILDADTF 122
Query: 124 ERPIYSGRIIATVQSTDIIKVITVRATNFISAKKEGNKAIIHIISKINYFSNTASIFISR 183
ERPIY+G I V+S D KV T+R +F +A + G + + + S +++
Sbjct: 123 ERPIYAGNAIQVVKSKDAKKVFTIRTASFDAAGEGGTAPVTETAAAAD---PGLSSWVAD 179
Query: 184 ELIKSKRPELTSAKIVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISNNLQ 243
E+ +S RPELTSA+ VV+GGRGLGS ++F I+E LADKL AA+GASRAAVD+GY N+ Q
Sbjct: 180 EVAESDRPELTSARRVVSGGRGLGSKESFAIIEELADKLGAAVGASRAAVDSGYAPNDWQ 239
Query: 244 IGQTGKIVAPQLYIAIGISGAIQHLSGMKDSKIIVAINQDEDAPIFDISDYGLVGDLFEI 303
+GQTGK+VAP+LY+A+GISGAIQHL+GMKDSK+IVAIN+DE+APIF I+DYGLVGDLF +
Sbjct: 240 VGQTGKVVAPELYVAVGISGAIQHLAGMKDSKVIVAINKDEEAPIFQIADYGLVGDLFSV 299
Query: 304 IPKFIKYL 311
+P+ L
Sbjct: 300 VPELTGKL 307
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET:
AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP:
c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D*
3clt_D* 3clr_D* 3cls_D*
Length = 320
Score = 374 bits (962), Expect = e-131
Identities = 82/319 (25%), Positives = 153/319 (47%), Gaps = 15/319 (4%)
Query: 4 LVIAEHDNSYLKTSTLNTITAATLCSD----EIHILIIGYNIEKVILDAKKVNNIKKILL 59
LVIAEH + L+ +L I AA ++ + +IG + + + ++++
Sbjct: 4 LVIAEHRRNDLRPVSLELIGAANGLKKSGEDKVVVAVIGSQADAFVPALSVNG-VDELVV 62
Query: 60 VDSLYFSNNLPENIAAQIS--VIASNYSHILAPATIYGKNILPRVAALLNVMQISEITKV 117
V + P+ A +S + A N S +L P ++ +A+ +++ V
Sbjct: 63 VKGSSI-DFDPDVFEASVSALIAAHNPSVVLLPHSVDSLGYASSLASKTGYGFATDVYIV 121
Query: 118 C---NPSTFERPIYSGRIIATVQ-STDIIKVITVRATNFISAKKEGNKAIIHIISKINYF 173
+ R Y+ ++ V V+T+R + F + G+ + ++ +
Sbjct: 122 EYQGDELVATRGGYNQKVNVEVDFPGKSTVVLTIRPSVFKPLEGAGSPVVSNVDAPSV-- 179
Query: 174 SNTASIFISRELIKSKRPELTSAKIVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAV 233
+ + E+ ++T+ +++ GRG+G N + LAD+ A + SR
Sbjct: 180 QSRSQNKDYVEVGGGNDIDITTVDFIMSIGRGIGEETNVEQFRELADEAGATLCCSRPIA 239
Query: 234 DAGYISNNLQIGQTGKIVAP-QLYIAIGISGAIQHLSGMKDSKIIVAINQDEDAPIFDIS 292
DAG++ + Q+GQ+GK+V +LY+A+GISG+IQH++GMK I+A+N D A IF I+
Sbjct: 240 DAGWLPKSRQVGQSGKVVGSCKLYVAMGISGSIQHMAGMKHVPTIIAVNTDPGASIFTIA 299
Query: 293 DYGLVGDLFEIIPKFIKYL 311
YG+V D+F+I + L
Sbjct: 300 KYGIVADIFDIEEELKAQL 318
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha
sandwich, structural genomics, PSI-2, protein structure
initiative; 2.60A {Bacteroides thetaiotaomicron}
Length = 217
Score = 85.9 bits (213), Expect = 4e-20
Identities = 26/180 (14%), Positives = 63/180 (35%), Gaps = 22/180 (12%)
Query: 4 LVIAEHDNSYLKTSTLNTITAATLCSD----EIHILIIGYNIEKVILDAKKVNNIKKILL 59
V E + + +L +T ++ ++ ++ G ++++ + K+ +
Sbjct: 7 FVYCEIEEGIVADVSLELLTKGRSLANELNCQLEAVVAGTGLKEIEKQILPYG-VDKLHV 65
Query: 60 VDSLYFSNNLPENIAAQISVIASNY--SHILAPATIYGKNILPRVAALLNVMQISEITKV 117
D+ + + + L AT+ G+++ PRV++ L ++ T +
Sbjct: 66 FDAEGLYPYTSLPHTSILVNLFKEEQPQICLMGATVIGRDLGPRVSSALTSGLTADCTSL 125
Query: 118 --------------CNPSTFERPIYSGRIIATVQSTD-IIKVITVRATNFISAKKEGNKA 162
N RP + G I+AT+ + + ++ TVR
Sbjct: 126 EIGDHEDKKEGKVYKNLLYQIRPAFGGNIVATIVNPEHRPQMATVREGVMKKEIVSPAYQ 185
>3fet_A Electron transfer flavoprotein subunit alpha RELA protein;
alpha-beta-alpha sandwich, structural genomics, PSI-2;
HET: MSE; 2.05A {Thermoplasma acidophilum}
Length = 166
Score = 56.3 bits (135), Expect = 6e-10
Identities = 29/169 (17%), Positives = 59/169 (34%), Gaps = 22/169 (13%)
Query: 1 MPALVIAEHDNSYLKTSTLNTITAATLCSDEIHILIIGYNIEKVILDAKKVNNIKKILLV 60
M L +++ N + +TL ++ +IIG DAK + +
Sbjct: 4 MKFLTVSDDMNFLRQVNTLVAGKG------DMDSVIIGEG------DAKGLGSKVLYRAK 51
Query: 61 DSLYFSNNLPENIAAQISVIASNYSHILAPATIYGKNILPRVAALLNVMQISEITKV--- 117
+ ++ I IA NY +I +T G+ I ++ +EI +
Sbjct: 52 KGT-----PFDAVSEGILKIAGNYDYIAIGSTEVGREIAGYLSFKTGFYTATEIFSLEFN 106
Query: 118 CNPSTFERPIYSGRIIATVQSTDIIKVITVRATNFISAKKEGNKAIIHI 166
+ +R Y G+ + +S +++TV + I +
Sbjct: 107 GQKAHTKRFFYGGKTVIEEESD--ARILTVAPGVIEAKDLGTTPEIRDL 153
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 1e-05
Identities = 57/341 (16%), Positives = 95/341 (27%), Gaps = 93/341 (27%)
Query: 7 AEHDNSYLKTSTLNTITAATLCSDEIHILIIGYNIEKVILDAKKVNNIKKILLVDSLYFS 66
+ L L L ++IH L E K IK Y +
Sbjct: 77 VGQFDQVLNLC-LTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN-------YIT 128
Query: 67 NNLPENIAAQIS--VIASNYSHILAPATIYGKNILPRVAALL----NVMQISEITKVCNP 120
A ++ + L A G ++ A+ N
Sbjct: 129 -------ARIMAKRPFDKKSNSALFRAVGEGNA---QLVAIFGGQGN-----------TD 167
Query: 121 STFE--RPIYSGRIIATVQS--TDIIKVITVRATNFISAKKEGNKAI---IHIIS----- 168
FE R +Y T D+IK + I + K ++I+
Sbjct: 168 DYFEELRDLYQ-----TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 169 ----KINYFSNTASIFISRELIKSKRPELTSAK--IVVAGGRGLGSSKNFKILEGL---- 218
+Y SI IS LI + +V A G + L+G
Sbjct: 223 SNTPDKDYL---LSIPISCPLI-----GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 219 ADKLNA-AIGAS-------RAAVDAGYISNNLQIGQTGKIVAPQLYIAIGISGAIQHLSG 270
+ A AI + + A I+ IG P + I
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKA--ITVLFFIGVRCYEAYPNTSLPPSI--------- 323
Query: 271 MKDSKIIVAINQDEDAPIFDISDYGLVGDLFEIIPKFIKYL 311
++DS + N+ +P+ IS+ + + + K +L
Sbjct: 324 LEDS---LENNEGVPSPMLSISNLTQE-QVQDYVNKTNSHL 360
Score = 41.6 bits (97), Expect = 3e-04
Identities = 42/257 (16%), Positives = 80/257 (31%), Gaps = 89/257 (34%)
Query: 12 SYLKTSTLNTITAATLCSDEIHIL-IIGYNIEKVILDAKKVNNIKKILLVDSLYFSNNLP 70
S L+ S N + +L I E+V K N+ +LP
Sbjct: 322 SILEDSLENNEGVPS------PMLSISNLTQEQVQDYVNKTNS--------------HLP 361
Query: 71 ENIAAQISVIASNYSHILA--PATIYGKNI-----------------------------L 99
+IS++ + +++ P ++YG N+ L
Sbjct: 362 AGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL 421
Query: 100 PRVAA-----LLN------VMQISEITKVCNPSTFERPIYS---G---RIIATVQSTDII 142
P VA+ LL + + N + P+Y G R+++ S I+
Sbjct: 422 P-VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIV 480
Query: 143 KVITVRATNFISAKKEGNKAIIHIISKINYF----SNTASIFISRELIKSKRPELTSAKI 198
I + + + HI+ F ++ + R + T ++
Sbjct: 481 DCIIRLPVKWETTTQ---FKATHILD----FGPGGASGLGVLTHRNK------DGTGVRV 527
Query: 199 VVAGGRGLGSSKN--FK 213
+VAG + + FK
Sbjct: 528 IVAGTLDINPDDDYGFK 544
Score = 30.4 bits (68), Expect = 0.97
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 29/69 (42%)
Query: 24 AATLCSDEIHILI--IG-----------YN--------------IEKV--ILDAKKVNNI 54
AA+ + + ++ +G YN ++ V +L+ K+ I
Sbjct: 1818 AASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKI 1877
Query: 55 KKILLVDSL 63
I L SL
Sbjct: 1878 DIIELQKSL 1886
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.36
Identities = 57/342 (16%), Positives = 93/342 (27%), Gaps = 134/342 (39%)
Query: 44 VILD----AKKVN--NIK-KILLV--DSLYFSNNLPENIAAQISVIASNYSHI------- 87
++L AK N N+ KILL + +S A+ +HI
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFK---------QVTDFLS--AATTTHISLDHHSM 296
Query: 88 -LAPA---TIYGKNI------LPRVAALLNVMQISEITKVCNPSTFERPIYSGRIIATVQ 137
L P ++ K + LPR N ++S IIA
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS-------------------IIAES- 336
Query: 138 STDIIKVITVRATNFISAKKEGNKAIIHIISK-IN---------YFSNTASIF-----IS 182
I+ N+ K + II +N F + +F I
Sbjct: 337 ----IRDGLATWDNW---KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-VFPPSAHIP 388
Query: 183 RELI-------KSKRPELTSAKIVVAGGRGL--GSSKNFKI-LEGLADKLNAAIGAS--- 229
L+ + K+ L K I + + +L +
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLH---KYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 230 -RAAVDAGYISNNLQIGQTGKIVAPQL--YIA--IGISGAIQHLSGMKDSKIIVAINQDE 284
R+ VD Y N + + ++ P L Y IG HL I E
Sbjct: 446 HRSIVDH-Y--NIPKTFDSDDLIPPYLDQYFYSHIG-----HHLK---------NIEHPE 488
Query: 285 DAPIF----------------DISDYGLVGDLFEIIPKFIKY 310
+F D + + G + + + Y
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine
biosynthesis, FEED-BACK inhibition, hexamer,
transferase; HET: NLG ADP; 2.95A {Pseudomonas
aeruginosa} SCOP: c.73.1.2
Length = 300
Score = 31.0 bits (71), Expect = 0.39
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 13/59 (22%)
Query: 258 AIGISGAIQHLSGMKDSKIIVA-----INQDEDAPIFDISDYGLVGDLFEIIPKFIKYL 311
AIG++G KD+++I A Q + +I D G VG++ + + L
Sbjct: 122 AIGLTG--------KDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLNML 172
>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics,
protein structure initiative, NYSGXRC, PSI; 2.80A
{Mycobacterium tuberculosis} SCOP: c.73.1.2
Length = 299
Score = 30.6 bits (70), Expect = 0.52
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Query: 258 AIGISGAIQHLSGMKDSKIIVAINQDEDAPIFDISDYGLVGDLFEIIPKFIKYL 311
A+GI+G +D+++ A+ + D GLVGD+ ++ + L
Sbjct: 121 AVGITG--------EDAQLFTAVRRSVTVDGVAT-DIGLVGDVDQVNTAAMLDL 165
>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid
kinase, phosphoryl group transfer, arginine metabolism,
transferase; HET: ARG NLG; 2.75A {Thermotoga maritima}
SCOP: c.73.1.2
Length = 282
Score = 29.8 bits (68), Expect = 1.1
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 14/54 (25%)
Query: 258 AIGISGAIQHLSGMKDSKIIVAINQDEDAPIFDISDYGLVGDLFEIIPKFIKYL 311
A+GI G KDSK+IVA + + D G VG + ++ P+ + L
Sbjct: 117 AVGICG--------KDSKLIVAEKETKHG------DIGYVGKVKKVNPEILHAL 156
>2egx_A Putative acetylglutamate kinase; struc genomics, NPPSFA, national
project on protein structural AN functional analyses;
1.92A {Thermus thermophilus} PDB: 3u6u_A
Length = 269
Score = 29.4 bits (67), Expect = 1.4
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 12/58 (20%)
Query: 258 AIGISGAIQHLSGMKDSKIIVA----INQDEDAPIFDISDYGLVGDLFEIIPKFIKYL 311
AIG+SG D ++ V + + + G + E+ + L
Sbjct: 97 AIGLSG--------LDGRLFVGRRKTAVKYVENGKVKVHRGDYTGTVEEVNKALLDLL 146
>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex,
regulation of arginine biosynthesis nitrogen metabolism,
kinase, transferase, transcription; HET: ARG ADP NLG
ATP; 2.51A {Arabidopsis thaliana}
Length = 298
Score = 29.1 bits (66), Expect = 1.6
Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 14/54 (25%)
Query: 258 AIGISGAIQHLSGMKDSKIIVAINQDEDAPIFDISDYGLVGDLFEIIPKFIKYL 311
A+G+SG D +++ A P+ + + G VG++ + P ++ L
Sbjct: 132 AVGLSG--------HDGRLLTA------RPVPNSAQLGFVGEVARVDPSVLRPL 171
>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription
regulation, transfera cyanobacteria, transcription; HET:
NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*
Length = 321
Score = 28.7 bits (65), Expect = 2.3
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 15/54 (27%)
Query: 258 AIGISGAIQHLSGMKDSKIIVAINQDEDAPIFDISDYGLVGDLFEIIPKFIKYL 311
A+G G D ++++A D++ G VG++ + + I+ L
Sbjct: 145 AVGFCG--------TDGRLVLARPHDQE-------GIGFVGEVNSVNSEVIEPL 183
>3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine
biosynthesi binding, nucleotide-binding, transferase;
HET: ADP NLG; 2.06A {Streptococcus mutans}
Length = 279
Score = 27.9 bits (63), Expect = 4.5
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 15/54 (27%)
Query: 258 AIGISGAIQHLSGMKDSKIIVAINQDEDAPIFDISDYGLVGDLFEIIPKFIKYL 311
+ ++ A D+D YG VGD+ I + I+
Sbjct: 130 CQQLKS--------DIKHVVAADYLDKD-------TYGYVGDVTHINKRVIEEF 168
>1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase,
arginine biosynthesis, phosphoryl group transfer,
protein crystallography; HET: NLG ANP; 1.5A {Escherichia
coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A*
1ohb_A* 2wxb_A 2x2w_A* 3t7b_A*
Length = 258
Score = 27.4 bits (62), Expect = 5.5
Identities = 12/54 (22%), Positives = 16/54 (29%), Gaps = 16/54 (29%)
Query: 258 AIGISGAIQHLSGMKDSKIIVAINQDEDAPIFDISDYGLVGDLFEIIPKFIKYL 311
A+G+ D + DE+ G VG PK I L
Sbjct: 99 AVGLFL--------GDGDSVKVTQLDEE--------LGHVGLAQPGSPKLINSL 136
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane,
transport protein; HET: NAG BMA MAN; 2.50A {Rattus
norvegicus}
Length = 384
Score = 27.0 bits (59), Expect = 9.1
Identities = 20/182 (10%), Positives = 50/182 (27%), Gaps = 13/182 (7%)
Query: 22 ITAATLCSDEIHILII---GYNIEKVILDA--KKVNNIKKILLVDSLYFSNNLPENIAAQ 76
I + I I + + E ++ K+L + ++ E
Sbjct: 1 IEERGAMPNNIQIGGLFPNQQSQEHAAFRFALSQLTEPPKLLPQIDIVNISDSFEMTYRF 60
Query: 77 ISVIASNYSHILAPATIYGKNILPRVAALLNVMQISEITKVCNPSTFE---RPIYSGRII 133
S + I N+L L+V I+ V + F RP +I
Sbjct: 61 CSQFSKGVYAIFGFYERRTVNMLTSFCGALHVCFITPSFPVDTSNQFVLQLRPELQEALI 120
Query: 134 ATVQSTDIIKVITVRATNFISAK-----KEGNKAIIHIISKINYFSNTASIFISRELIKS 188
+ + + + + + + + + + + + ++
Sbjct: 121 SIIDHYKWQTFVYIYDADRGLSVLQRVLDTAAEKNWQVTAVNILTTTEEGYRMLFQDLEK 180
Query: 189 KR 190
K+
Sbjct: 181 KK 182
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.368
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,684,481
Number of extensions: 295330
Number of successful extensions: 659
Number of sequences better than 10.0: 1
Number of HSP's gapped: 648
Number of HSP's successfully gapped: 27
Length of query: 312
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 219
Effective length of database: 4,105,140
Effective search space: 899025660
Effective search space used: 899025660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.9 bits)