RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9406
         (312 letters)



>d1efva2 c.31.1.2 (A:208-331) C-terminal domain of the electron
           transfer flavoprotein alpha subunit {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 124

 Score =  179 bits (455), Expect = 2e-57
 Identities = 84/122 (68%), Positives = 109/122 (89%)

Query: 190 RPELTSAKIVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISNNLQIGQTGK 249
           RPELT AK+VV+GGRGL S +NFK+L  LAD+L+AA+GASRAAVDAG++ N++Q+GQTGK
Sbjct: 2   RPELTGAKVVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDAGFVPNDMQVGQTGK 61

Query: 250 IVAPQLYIAIGISGAIQHLSGMKDSKIIVAINQDEDAPIFDISDYGLVGDLFEIIPKFIK 309
           IVAP+LYIA+GISGAIQHL+GMKDSK IVAIN+D +APIF ++DYG+V DLF+++P+  +
Sbjct: 62  IVAPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTE 121

Query: 310 YL 311
            L
Sbjct: 122 IL 123


>d3clsd2 c.31.1.2 (D:196-318) C-terminal domain of the electron
           transfer flavoprotein alpha subunit {Methylophilus
           methylotrophus [TaxId: 17]}
          Length = 123

 Score =  169 bits (429), Expect = 2e-53
 Identities = 47/121 (38%), Positives = 77/121 (63%), Gaps = 1/121 (0%)

Query: 192 ELTSAKIVVAGGRGLGSSKNFKILEGLADKLNAAIGASRAAVDAGYISNNLQIGQTGK-I 250
           ++T+   +++ GRG+G   N +    LAD+  A +  S    DAG++  + Q+GQ+GK +
Sbjct: 3   DITTVDFIMSIGRGIGEETNVEQFRELADEAGATLCCSCPIADAGWLPKSRQVGQSGKVV 62

Query: 251 VAPQLYIAIGISGAIQHLSGMKDSKIIVAINQDEDAPIFDISDYGLVGDLFEIIPKFIKY 310
            + +LY+A+GISG+IQH++GMK    I+A+N D  A IF I+ YG+V D+F+I  +    
Sbjct: 63  GSCKLYVAMGISGSIQHMAGMKHVPTIIAVNTDPGASIFTIAKYGIVADIFDIEEELKAQ 122

Query: 311 L 311
           L
Sbjct: 123 L 123


>d1efva1 c.26.2.3 (A:20-207) Large, alpha subunit of electron
           transfer flavoprotein ETFP, N-terminal domain {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 188

 Score =  129 bits (326), Expect = 2e-37
 Identities = 75/187 (40%), Positives = 102/187 (54%), Gaps = 4/187 (2%)

Query: 4   LVIAEHDNSYLKTSTLNTITAATLCSDEIHILIIGYNIEKVILDAKKVNNIKKILLVDSL 63
           LVIAEH N  L   TLNTITAAT    E+  L+ G   +KV  D  KV  I K+L+    
Sbjct: 4   LVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAGIAKVLVAQHD 63

Query: 64  YFSNNLPENIAAQISVIA--SNYSHILAPATIYGKNILPRVAALLNVMQISEITKVCNPS 121
            +   LPE +   I       NY+HI A A+ +GKN+LPRVAA L V  IS+I  + +P 
Sbjct: 64  VYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDIIAIKSPD 123

Query: 122 TFERPIYSGRIIATVQSTDIIKVITVRATNFISAKKEGNKAIIHIISKINYFSNTASIFI 181
           TF R IY+G  + TV+  + +KV +VR T+F +A   G  A     S  +      S ++
Sbjct: 124 TFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSGGSASSEKASSTS--PVEISEWL 181

Query: 182 SRELIKS 188
            ++L KS
Sbjct: 182 DQKLTKS 188


>d1efpa1 c.26.2.3 (A:2-184) Large, alpha subunit of electron
           transfer flavoprotein ETFP, N-terminal domain
           {Paracoccus denitrificans [TaxId: 266]}
          Length = 183

 Score =  119 bits (299), Expect = 2e-33
 Identities = 59/184 (32%), Positives = 99/184 (53%), Gaps = 3/184 (1%)

Query: 4   LVIAEHDNSYLKTSTLNTITAATLCSDEIHILIIGYNIEKVILDAKKVNNIKKILLVDSL 63
           L++ E  N  L         AA     ++ +L  G + +    +A K+  + K+L+ +  
Sbjct: 3   LLLGEVTNGALNRDATAKAVAAVKALGDVTVLCAGASAKAAAEEAAKIAGVAKVLVAEDA 62

Query: 64  YFSNNLPENIAAQISVIASNYSHILAPATIYGKNILPRVAALLNVMQISEITKVCNPSTF 123
            + + L E  AA I  +A +YSHI APAT   KN++PRVAALL+VM +S+++ + +  TF
Sbjct: 63  LYGHRLAEPTAALIVGLAGDYSHIAAPATTDAKNVMPRVAALLDVMVLSDVSAILDADTF 122

Query: 124 ERPIYSGRIIATVQSTDIIKVITVRATNFISAKKEGNKAIIHIISKINYFSNTASIFISR 183
           ERPIY+G  I  V+S D  KV T+R  +F +A + G   +    +  +      S +++ 
Sbjct: 123 ERPIYAGNAIQVVKSKDAKKVFTIRTASFDAAGEGGTAPVTETAAAAD---PGLSSWVAD 179

Query: 184 ELIK 187
           E+ +
Sbjct: 180 EVAE 183


>d3clsd1 c.26.2.3 (D:1-192) Large, alpha subunit of electron
           transfer flavoprotein ETFP, N-terminal domain
           {Methylophilus methylotrophus [TaxId: 17]}
          Length = 192

 Score = 94.0 bits (233), Expect = 9e-24
 Identities = 29/171 (16%), Positives = 65/171 (38%), Gaps = 8/171 (4%)

Query: 4   LVIAEHDNSYLKTSTLNTITAATLCSD----EIHILIIGYNIEKVILDAKKVNNIKKILL 59
           LVIAEH  + L+  +L  I AA         ++ + +IG   +  +         + +++
Sbjct: 4   LVIAEHRRNDLRPVSLELIGAANGLKKSGEDKVVVAVIGSQADAFVPALSVNGVDELVVV 63

Query: 60  VDSLYFSNNLPENIAAQISVIASNYSHILAPATIYGKNILPRVAALLNVMQISEITKVC- 118
             S    +      +    + A N S +L P ++        +A+       +++  V  
Sbjct: 64  KGSSIDFDPDVFEASVSALIAAHNPSVVLLPHSVDSLGYASSLASKTGYGFATDVYIVEY 123

Query: 119 --NPSTFERPIYSGRIIATVQ-STDIIKVITVRATNFISAKKEGNKAIIHI 166
             +     R  Y+ ++   V        V+T+R + F   +  G+  + ++
Sbjct: 124 QGDELVATRGGYNQKVNVEVDFPGKSTVVLTIRPSVFKPLEGAGSPVVSNV 174


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.368 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,098,536
Number of extensions: 50284
Number of successful extensions: 157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 16
Length of query: 312
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 227
Effective length of database: 1,240,546
Effective search space: 281603942
Effective search space used: 281603942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)