BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9408
(219 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EFP|B Chain B, Electron Transfer Flavoprotein (Etf) From Paracoccus
Denitrificans
pdb|1EFP|D Chain D, Electron Transfer Flavoprotein (Etf) From Paracoccus
Denitrificans
Length = 252
Score = 191 bits (486), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/223 (46%), Positives = 145/223 (65%), Gaps = 7/223 (3%)
Query: 1 MSINPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILI-ETDT 59
MS+NPFDEIA+E AIRL+E + +EIIA+S G K+ E L+ A+AMG DRAIL+ D
Sbjct: 33 MSMNPFDEIAVEEAIRLKEK-GQAEEIIAVSIGVKQAAETLRTALAMGADRAILVVAADD 91
Query: 60 ILQS---LSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIV 116
+ Q L+VAK+L + + E +L+I GKQ+ID+D N TGQMLAA+L W QATFASK+
Sbjct: 92 VQQDIEPLAVAKILAAVARAEGTELIIAGKQAIDNDMNATGQMLAAILGWAQATFASKVE 151
Query: 117 LKKNNKILVTQEIEDGKETILLSLPAIITTDLRMNEPRYVTLMXXXXXXXXXXXXXXXDE 176
+ + K VT+E++ G +TI +SLPA++T DLR+NEPRY +L +
Sbjct: 152 I-EGAKAKVTREVDGGLQTIAVSLPAVVTADLRLNEPRYASLPNIMKAKKKPLDEKTAAD 210
Query: 177 LNVNINTGLNIIKVKESHKNNLGIKVKNVIELIDKLKNEAKII 219
V++ L ++ V+E GIKV +V EL+ KLK EA +I
Sbjct: 211 YGVDVAPRLEVVSVREPEGRKAGIKVGSVDELVGKLK-EAGVI 252
>pdb|1EFV|B Chain B, Three-Dimensional Structure Of Human Electron Transfer
Flavoprotein To 2.1 A Resolution
pdb|1T9G|S Chain S, Structure Of The Human Mcad:etf Complex
Length = 255
Score = 188 bits (477), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 141/221 (63%), Gaps = 6/221 (2%)
Query: 2 SINPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTI- 60
S+NPF EIA+E A+RL+E +KE+IA+SCG +C+E ++ A+AMG DR I +E
Sbjct: 37 SMNPFCEIAVEEAVRLKEK-KLVKEVIAVSCGPAQCQETIRTALAMGADRGIHVEVPPAE 95
Query: 61 ---LQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIVL 117
L L VA++L + +KE LV+LGKQ+ID D NQTGQM A L+WPQ TFAS++ L
Sbjct: 96 AERLGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTFASQVTL 155
Query: 118 KKNNKILVTQEIEDGKETILLSLPAIITTDLRMNEPRYVTLMXXXXXXXXXXXXXXXDEL 177
+ +K+ V +EI+ G ET+ L LPA++T DLR+NEPRY TL +L
Sbjct: 156 -EGDKLKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMKAKKKKIEVIKPGDL 214
Query: 178 NVNINTGLNIIKVKESHKNNLGIKVKNVIELIDKLKNEAKI 218
V++ + L++I V++ + G+KV+ +L+ KLK +I
Sbjct: 215 GVDLTSKLSVISVEDPPQRTAGVKVETTEDLVAKLKEIGRI 255
>pdb|2A1T|S Chain S, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1U|B Chain B, Crystal Structure Of The Human Etf E165betaa Mutant
Length = 255
Score = 186 bits (471), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 140/221 (63%), Gaps = 6/221 (2%)
Query: 2 SINPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTI- 60
S+NPF EIA+E A+RL+E +KE+IA+SCG +C+E ++ A+AMG DR I +E
Sbjct: 37 SMNPFCEIAVEEAVRLKEK-KLVKEVIAVSCGPAQCQETIRTALAMGADRGIHVEVPPAE 95
Query: 61 ---LQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIVL 117
L L VA++L + +KE LV+LGKQ+ID D NQTGQM A L+WPQ TFAS++ L
Sbjct: 96 AERLGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTFASQVTL 155
Query: 118 KKNNKILVTQEIEDGKETILLSLPAIITTDLRMNEPRYVTLMXXXXXXXXXXXXXXXDEL 177
+ +K+ V + I+ G ET+ L LPA++T DLR+NEPRY TL +L
Sbjct: 156 -EGDKLKVERAIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMKAKKKKIEVIKPGDL 214
Query: 178 NVNINTGLNIIKVKESHKNNLGIKVKNVIELIDKLKNEAKI 218
V++ + L++I V++ + G+KV+ +L+ KLK +I
Sbjct: 215 GVDLTSKLSVISVEDPPQRTAGVKVETTEDLVAKLKEIGRI 255
>pdb|1O94|C Chain C, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O94|E Chain E, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|C Chain C, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|E Chain E, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O96|A Chain A, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O96|C Chain C, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O96|E Chain E, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O96|Q Chain Q, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O97|C Chain C, Structure Of Electron Transferring Flavoprotein From
Methylophilus Methylotrophus, Recognition Loop Removed
By Limited Proteolysis
pdb|3CLR|C Chain C, Crystal Structure Of The R236a Etf Mutant From M.
Methylotrophus
pdb|3CLS|C Chain C, Crystal Structure Of The R236c Mutant Of Etf From
Methylophilus Methylotrophus
pdb|3CLT|C Chain C, Crystal Structure Of The R236e Mutant Of Methylophilus
Methylotrophus Etf
pdb|3CLU|C Chain C, Crystal Structure Of The R236k Mutant From Methylophilus
Methylotrophus Etf
Length = 264
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 95/160 (59%), Gaps = 4/160 (2%)
Query: 3 INPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQ 62
+N +D+ ++E A++++ESS+ E++ +S G + E L+ +A G DRA+ + D
Sbjct: 35 LNEWDDFSLEEAMKIKESSDTDVEVVVVSVGPDRVDESLRKCLAKGADRAVRVWDDAAEG 94
Query: 63 S--LSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIVLKK- 119
S + V ++L ++KKE P +V G QS D TG +A+ LNWP A + + K
Sbjct: 95 SDAIVVGRILTEVIKKEAPDMVFAGVQSSDQAYASTGISVASYLNWPHAAVVADLQYKPG 154
Query: 120 NNKILVTQEIEDGK-ETILLSLPAIITTDLRMNEPRYVTL 158
+NK ++ +E+E G + + ++ PA++T L +N+PRY +L
Sbjct: 155 DNKAVIRRELEGGMLQEVEINCPAVLTIQLGINKPRYASL 194
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.349
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,889,277
Number of Sequences: 62578
Number of extensions: 157074
Number of successful extensions: 513
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 490
Number of HSP's gapped (non-prelim): 16
length of query: 219
length of database: 14,973,337
effective HSP length: 95
effective length of query: 124
effective length of database: 9,028,427
effective search space: 1119524948
effective search space used: 1119524948
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)