Query psy9408
Match_columns 219
No_of_seqs 185 out of 1420
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 18:25:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9408.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9408hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK03359 putative electron tra 100.0 3.8E-56 8.3E-61 381.4 27.0 213 1-215 32-255 (256)
2 PRK12342 hypothetical protein; 100.0 1.1E-54 2.4E-59 371.8 27.6 211 1-215 31-252 (254)
3 COG2086 FixA Electron transfer 100.0 4E-55 8.8E-60 374.2 24.9 218 1-219 33-260 (260)
4 KOG3180|consensus 100.0 1.7E-48 3.7E-53 315.4 20.5 216 1-217 36-253 (254)
5 cd01714 ETF_beta The electron 100.0 3.3E-34 7.2E-39 238.7 23.3 169 2-173 32-202 (202)
6 cd01985 ETF The electron trans 100.0 2E-31 4.4E-36 217.7 20.3 162 1-173 15-181 (181)
7 PF01012 ETF: Electron transfe 100.0 8.6E-31 1.9E-35 210.7 15.5 146 2-153 12-164 (164)
8 cd01715 ETF_alpha The electron 99.9 8.5E-24 1.8E-28 171.0 16.6 140 2-155 12-156 (168)
9 PLN00022 electron transfer fla 99.8 3.8E-19 8.2E-24 158.8 19.8 180 3-194 40-228 (356)
10 PRK03363 fixB putative electro 99.8 1.2E-18 2.5E-23 153.5 20.2 136 8-157 18-158 (313)
11 PRK11916 electron transfer fla 99.8 1.5E-18 3.4E-23 152.7 17.0 135 9-157 19-157 (312)
12 COG2025 FixB Electron transfer 99.8 4.3E-18 9.3E-23 149.2 18.7 139 3-157 14-158 (313)
13 KOG3954|consensus 99.3 1.2E-10 2.5E-15 99.2 14.8 140 2-155 33-179 (336)
14 cd00293 USP_Like Usp: Universa 96.6 0.09 1.9E-06 38.4 12.1 98 4-109 9-128 (130)
15 cd01988 Na_H_Antiporter_C The 95.8 0.28 6E-06 36.5 11.6 99 4-109 9-129 (132)
16 cd01987 USP_OKCHK USP domain i 95.8 0.077 1.7E-06 39.5 8.4 95 4-107 9-119 (124)
17 cd01989 STK_N The N-terminal d 94.6 0.72 1.6E-05 35.2 10.6 95 4-105 9-135 (146)
18 PF00582 Usp: Universal stress 93.7 2 4.3E-05 31.3 11.3 98 4-109 12-137 (140)
19 PRK15118 universal stress glob 92.7 2.5 5.4E-05 32.1 10.7 77 4-88 13-113 (144)
20 PRK10116 universal stress prot 92.4 3 6.5E-05 31.5 10.8 98 4-109 13-135 (142)
21 PF07355 GRDB: Glycine/sarcosi 92.0 0.68 1.5E-05 41.7 7.5 79 31-112 33-118 (349)
22 PRK15456 universal stress prot 91.7 4.6 0.0001 30.7 11.8 96 5-109 15-139 (142)
23 PRK15005 universal stress prot 91.4 4.9 0.00011 30.3 11.4 43 67-109 96-141 (144)
24 PF07287 DUF1446: Protein of u 91.3 2.1 4.7E-05 38.9 10.0 96 3-107 81-186 (362)
25 PRK10481 hypothetical protein; 91.2 1.7 3.7E-05 36.9 8.7 86 24-113 129-214 (224)
26 PRK11175 universal stress prot 90.8 2.8 6E-05 36.2 10.1 97 6-109 171-296 (305)
27 TIGR01918 various_sel_PB selen 90.7 1.1 2.4E-05 41.4 7.6 78 32-112 30-114 (431)
28 PF02585 PIG-L: GlcNAc-PI de-N 90.7 1.8 3.9E-05 32.6 7.7 51 38-88 56-110 (128)
29 TIGR01917 gly_red_sel_B glycin 90.3 1.4 3.1E-05 40.7 7.9 79 32-112 29-114 (431)
30 PRK12652 putative monovalent c 90.3 3.2 7E-05 37.6 10.2 100 4-103 15-138 (357)
31 KOG0081|consensus 89.9 0.51 1.1E-05 38.3 4.2 64 46-109 91-159 (219)
32 PRK11175 universal stress prot 89.8 3.4 7.4E-05 35.6 9.7 99 4-109 13-142 (305)
33 PRK09982 universal stress prot 89.1 4.6 0.0001 30.9 9.1 75 5-87 14-112 (142)
34 PRK10490 sensor protein KdpD; 89.0 4.1 8.9E-05 41.3 10.9 78 4-90 260-348 (895)
35 TIGR01860 VNFD nitrogenase van 88.9 3.5 7.7E-05 38.5 9.7 80 11-109 340-419 (461)
36 PF04007 DUF354: Protein of un 88.7 5.8 0.00013 35.6 10.6 97 3-112 8-110 (335)
37 TIGR01284 alt_nitrog_alph nitr 88.6 2.9 6.2E-05 39.1 8.9 33 69-110 386-418 (457)
38 PF13477 Glyco_trans_4_2: Glyc 87.5 7.8 0.00017 28.9 9.3 102 2-114 5-108 (139)
39 COG0299 PurN Folate-dependent 86.8 8.6 0.00019 32.0 9.6 76 6-86 12-87 (200)
40 TIGR01162 purE phosphoribosyla 86.6 8.1 0.00018 31.0 9.1 75 29-109 2-80 (156)
41 PRK02910 light-independent pro 85.8 6.2 0.00013 37.5 9.5 33 68-109 352-384 (519)
42 CHL00076 chlB photochlorophyll 85.6 4.7 0.0001 38.3 8.6 33 68-109 364-396 (513)
43 COG0041 PurE Phosphoribosylcar 85.2 9.7 0.00021 30.5 8.8 77 27-109 4-84 (162)
44 cd01984 AANH_like Adenine nucl 85.1 4.7 0.0001 27.9 6.5 28 65-92 35-62 (86)
45 TIGR03446 mycothiol_Mca mycoth 84.5 9.5 0.00021 33.5 9.4 48 39-86 65-129 (283)
46 TIGR01278 DPOR_BchB light-inde 84.4 5.9 0.00013 37.5 8.6 32 69-109 355-386 (511)
47 cd01977 Nitrogenase_VFe_alpha 84.3 6.7 0.00015 36.0 8.8 31 71-110 351-381 (415)
48 cd07941 DRE_TIM_LeuA3 Desulfob 82.7 28 0.0006 30.1 11.6 90 10-103 120-217 (273)
49 PF00731 AIRC: AIR carboxylase 82.4 9.5 0.00021 30.4 7.8 76 28-109 3-82 (150)
50 TIGR03445 mycothiol_MshB 1D-my 81.3 13 0.00028 32.6 9.1 47 38-84 63-129 (284)
51 cd03466 Nitrogenase_NifN_2 Nit 80.0 19 0.0004 33.3 10.1 33 68-109 362-394 (429)
52 PRK12330 oxaloacetate decarbox 79.4 34 0.00074 32.5 11.7 101 6-109 121-229 (499)
53 PLN03159 cation/H(+) antiporte 79.4 11 0.00023 38.1 8.8 79 4-87 640-751 (832)
54 TIGR01861 ANFD nitrogenase iro 79.2 16 0.00034 34.9 9.4 29 72-109 392-420 (513)
55 PRK06849 hypothetical protein; 79.0 12 0.00027 33.7 8.4 71 8-87 15-85 (389)
56 COG0503 Apt Adenine/guanine ph 78.9 6.1 0.00013 32.2 5.8 73 61-138 33-108 (179)
57 TIGR01862 N2-ase-Ialpha nitrog 78.6 15 0.00033 34.1 9.1 32 70-110 379-410 (443)
58 PRK07199 phosphoribosylpyropho 77.5 10 0.00022 33.5 7.3 69 38-109 107-187 (301)
59 PRK05692 hydroxymethylglutaryl 77.4 46 0.001 29.1 11.3 89 9-102 120-220 (287)
60 cd01981 Pchlide_reductase_B Pc 76.8 18 0.00038 33.3 8.9 35 68-111 360-394 (430)
61 cd07943 DRE_TIM_HOA 4-hydroxy- 76.4 44 0.00096 28.5 10.8 91 9-103 112-207 (263)
62 PRK08195 4-hyroxy-2-oxovalerat 76.1 50 0.0011 29.6 11.4 90 10-102 116-210 (337)
63 cd01974 Nitrogenase_MoFe_beta 75.8 27 0.00059 32.3 9.9 32 69-109 368-399 (435)
64 PRK14040 oxaloacetate decarbox 75.6 37 0.0008 33.0 11.0 94 9-107 124-225 (593)
65 PRK12331 oxaloacetate decarbox 75.6 47 0.001 31.1 11.3 95 10-109 124-226 (448)
66 cd02064 FAD_synthetase_N FAD s 75.4 14 0.00031 29.7 7.1 77 8-89 16-110 (180)
67 COG1212 KdsB CMP-2-keto-3-deox 75.4 19 0.00041 30.8 7.9 71 26-107 20-90 (247)
68 PF05728 UPF0227: Uncharacteri 75.2 15 0.00032 30.1 7.1 65 40-109 19-85 (187)
69 cd01976 Nitrogenase_MoFe_alpha 74.8 20 0.00043 33.1 8.7 32 69-109 360-391 (421)
70 COG2120 Uncharacterized protei 74.5 20 0.00043 30.4 8.0 50 39-88 67-119 (237)
71 TIGR00661 MJ1255 conserved hyp 74.3 36 0.00077 29.7 9.9 33 71-110 86-118 (321)
72 PF00107 ADH_zinc_N: Zinc-bind 74.0 10 0.00023 28.0 5.6 60 13-84 5-64 (130)
73 PRK13811 orotate phosphoribosy 73.9 20 0.00043 28.8 7.5 45 61-109 39-83 (170)
74 PRK12581 oxaloacetate decarbox 73.8 58 0.0013 30.8 11.4 98 7-109 130-235 (468)
75 PF00289 CPSase_L_chain: Carba 73.7 21 0.00046 26.6 7.1 81 10-103 14-94 (110)
76 PRK11890 phosphate acetyltrans 73.4 15 0.00034 32.7 7.2 80 2-89 27-107 (312)
77 COG0604 Qor NADPH:quinone redu 73.1 11 0.00025 33.4 6.4 77 13-107 158-234 (326)
78 PF00682 HMGL-like: HMGL-like 73.1 53 0.0011 27.3 10.8 95 10-108 109-209 (237)
79 PRK02269 ribose-phosphate pyro 72.6 16 0.00035 32.6 7.2 70 37-109 111-192 (320)
80 PRK13671 hypothetical protein; 72.1 34 0.00075 30.3 9.1 86 4-90 10-105 (298)
81 PRK09219 xanthine phosphoribos 70.6 7 0.00015 32.2 4.2 45 61-109 30-77 (189)
82 cd01971 Nitrogenase_VnfN_like 70.4 39 0.00085 31.1 9.5 32 69-109 358-393 (427)
83 PRK14041 oxaloacetate decarbox 70.2 69 0.0015 30.2 11.1 98 7-109 120-225 (467)
84 PRK00979 tetrahydromethanopter 70.0 28 0.0006 31.0 8.0 116 1-117 99-231 (308)
85 cd07945 DRE_TIM_CMS Leptospira 69.9 75 0.0016 27.7 10.9 64 37-102 149-212 (280)
86 PRK07904 short chain dehydroge 69.8 56 0.0012 27.3 9.7 74 10-86 21-95 (253)
87 PRK00726 murG undecaprenyldiph 68.8 35 0.00075 29.9 8.6 92 9-111 17-120 (357)
88 PLN02746 hydroxymethylglutaryl 68.5 73 0.0016 28.8 10.6 93 5-102 155-262 (347)
89 COG1064 AdhP Zn-dependent alco 68.4 19 0.0004 32.6 6.7 38 13-56 181-218 (339)
90 TIGR03217 4OH_2_O_val_ald 4-hy 68.3 89 0.0019 28.0 11.9 90 10-102 115-209 (333)
91 cd03411 Ferrochelatase_N Ferro 68.2 24 0.00052 27.9 6.7 79 5-83 65-152 (159)
92 TIGR01251 ribP_PPkin ribose-ph 68.0 15 0.00032 32.5 6.0 70 37-109 107-186 (308)
93 COG4126 Hydantoin racemase [Am 67.7 44 0.00096 28.4 8.3 84 25-113 110-205 (230)
94 PRK09282 pyruvate carboxylase 67.2 64 0.0014 31.4 10.5 90 8-102 122-218 (592)
95 cd03174 DRE_TIM_metallolyase D 67.2 75 0.0016 26.6 11.4 68 9-78 115-189 (265)
96 cd06353 PBP1_BmpA_Med_like Per 67.0 63 0.0014 27.4 9.6 91 5-104 14-117 (258)
97 COG1184 GCD2 Translation initi 67.0 84 0.0018 28.0 10.3 89 30-118 124-234 (301)
98 PRK05627 bifunctional riboflav 66.9 30 0.00065 30.7 7.7 77 8-89 30-125 (305)
99 cd07944 DRE_TIM_HOA_like 4-hyd 66.9 83 0.0018 27.1 11.1 47 37-83 140-186 (266)
100 cd03409 Chelatase_Class_II Cla 66.5 42 0.00092 23.6 7.3 52 5-57 14-67 (101)
101 PF02670 DXP_reductoisom: 1-de 66.2 25 0.00055 27.2 6.2 75 9-89 13-101 (129)
102 PF10087 DUF2325: Uncharacteri 66.1 23 0.0005 25.4 5.8 76 29-109 2-79 (97)
103 PLN02948 phosphoribosylaminoim 65.8 53 0.0011 31.8 9.7 78 26-109 411-492 (577)
104 TIGR01744 XPRTase xanthine pho 65.8 10 0.00022 31.3 4.2 45 61-109 30-77 (191)
105 cd07937 DRE_TIM_PC_TC_5S Pyruv 65.7 89 0.0019 27.0 11.0 96 7-107 116-219 (275)
106 PLN02293 adenine phosphoribosy 65.3 13 0.00029 30.4 4.8 41 65-109 49-89 (187)
107 cd07939 DRE_TIM_NifV Streptomy 64.8 84 0.0018 26.7 9.9 63 37-102 141-203 (259)
108 PRK09517 multifunctional thiam 64.5 71 0.0015 31.9 10.6 113 7-124 151-288 (755)
109 TIGR01286 nifK nitrogenase mol 64.2 66 0.0014 30.7 9.9 32 69-109 428-459 (515)
110 CHL00073 chlN photochlorophyll 64.1 42 0.00091 31.6 8.4 67 9-85 325-398 (457)
111 PRK01259 ribose-phosphate pyro 64.0 19 0.00042 31.8 5.9 70 37-109 106-185 (309)
112 PRK14478 nitrogenase molybdenu 63.4 58 0.0013 30.6 9.3 32 69-109 384-415 (475)
113 PRK01215 competence damage-ind 63.1 1E+02 0.0022 26.7 10.4 82 26-111 5-95 (264)
114 TIGR01283 nifE nitrogenase mol 62.6 1.1E+02 0.0024 28.4 11.0 72 28-110 329-418 (456)
115 cd08177 MAR Maleylacetate redu 62.3 61 0.0013 28.8 8.9 99 63-167 62-166 (337)
116 COG0462 PrsA Phosphoribosylpyr 61.9 76 0.0016 28.4 9.1 72 40-115 113-195 (314)
117 PRK08558 adenine phosphoribosy 61.6 11 0.00024 32.1 3.8 41 65-109 98-138 (238)
118 cd00885 cinA Competence-damage 61.3 84 0.0018 25.2 10.6 69 42-114 26-94 (170)
119 TIGR02990 ectoine_eutA ectoine 61.2 23 0.0005 30.2 5.7 87 25-114 121-215 (239)
120 PF13684 Dak1_2: Dihydroxyacet 61.2 56 0.0012 29.0 8.3 59 36-105 130-188 (313)
121 cd01965 Nitrogenase_MoFe_beta_ 60.8 1.2E+02 0.0025 27.9 10.7 75 25-109 300-393 (428)
122 PRK14571 D-alanyl-alanine synt 60.7 63 0.0014 27.9 8.5 73 28-110 3-84 (299)
123 PRK03092 ribose-phosphate pyro 60.6 27 0.00059 30.8 6.2 68 37-107 95-174 (304)
124 PRK00676 hemA glutamyl-tRNA re 60.3 50 0.0011 29.8 7.9 59 27-87 175-235 (338)
125 cd01968 Nitrogenase_NifE_I Nit 60.0 70 0.0015 29.2 9.0 32 69-109 347-378 (410)
126 TIGR01108 oadA oxaloacetate de 59.5 1.3E+02 0.0028 29.2 11.1 94 9-107 118-219 (582)
127 PF10686 DUF2493: Protein of u 59.4 46 0.00099 22.9 5.9 56 53-110 6-62 (71)
128 PRK00843 egsA NAD(P)-dependent 59.0 68 0.0015 28.7 8.7 96 64-165 73-173 (350)
129 cd07938 DRE_TIM_HMGL 3-hydroxy 58.8 1.2E+02 0.0026 26.2 11.1 41 37-77 151-191 (274)
130 PF06574 FAD_syn: FAD syntheta 58.5 91 0.002 24.7 8.5 94 8-106 22-134 (157)
131 TIGR00315 cdhB CO dehydrogenas 58.4 15 0.00032 29.7 3.8 47 68-114 18-64 (162)
132 TIGR01426 MGT glycosyltransfer 58.1 16 0.00036 32.6 4.5 37 70-112 84-120 (392)
133 PRK09213 pur operon repressor; 57.6 16 0.00034 32.0 4.1 45 61-109 110-157 (271)
134 TIGR01285 nifN nitrogenase mol 57.5 1.2E+02 0.0026 28.1 10.2 68 29-109 315-395 (432)
135 PF00205 TPP_enzyme_M: Thiamin 57.1 10 0.00022 28.9 2.6 46 69-114 3-48 (137)
136 cd01972 Nitrogenase_VnfE_like 57.0 61 0.0013 29.8 8.2 37 68-111 363-399 (426)
137 PLN00200 argininosuccinate syn 56.4 75 0.0016 29.4 8.5 74 15-90 23-125 (404)
138 TIGR01743 purR_Bsub pur operon 56.1 17 0.00036 31.8 4.0 46 61-110 108-156 (268)
139 PF13579 Glyco_trans_4_4: Glyc 55.7 14 0.0003 27.4 3.1 95 8-114 5-105 (160)
140 PF05636 HIGH_NTase1: HIGH Nuc 55.3 26 0.00057 32.1 5.4 82 4-90 11-106 (388)
141 PRK00945 acetyl-CoA decarbonyl 55.0 19 0.00041 29.3 3.9 47 68-114 25-72 (171)
142 COG1691 NCAIR mutase (PurE)-re 55.0 1.2E+02 0.0025 26.2 8.6 87 24-118 117-208 (254)
143 TIGR03679 arCOG00187 arCOG0018 54.9 1.2E+02 0.0027 25.2 9.6 70 38-110 46-117 (218)
144 COG1922 WecG Teichoic acid bio 54.8 73 0.0016 27.6 7.7 62 27-89 109-172 (253)
145 cd06337 PBP1_ABC_ligand_bindin 54.8 44 0.00096 29.4 6.7 57 52-111 43-99 (357)
146 cd03819 GT1_WavL_like This fam 54.8 1.3E+02 0.0029 25.5 9.9 96 8-115 14-111 (355)
147 PRK14569 D-alanyl-alanine synt 54.6 66 0.0014 27.9 7.6 34 76-110 54-87 (296)
148 PRK00553 ribose-phosphate pyro 54.6 47 0.001 29.8 6.8 70 37-109 115-195 (332)
149 TIGR01279 DPOR_bchN light-inde 54.5 67 0.0015 29.4 7.9 18 69-86 334-351 (407)
150 PRK02458 ribose-phosphate pyro 53.6 32 0.0007 30.7 5.5 70 37-109 115-196 (323)
151 COG1348 NifH Nitrogenase subun 53.6 39 0.00083 29.3 5.7 64 49-114 143-212 (278)
152 PF03808 Glyco_tran_WecB: Glyc 53.5 1.1E+02 0.0025 24.3 9.9 78 28-108 50-129 (172)
153 PRK14042 pyruvate carboxylase 52.7 2E+02 0.0043 28.1 11.1 96 7-107 121-224 (596)
154 TIGR00032 argG argininosuccina 52.7 79 0.0017 29.1 8.0 68 24-91 23-119 (394)
155 PF00764 Arginosuc_synth: Argi 52.6 86 0.0019 28.9 8.2 86 15-104 15-129 (388)
156 TIGR02090 LEU1_arch isopropylm 52.5 1.8E+02 0.0039 26.3 10.6 64 37-103 143-206 (363)
157 PRK02304 adenine phosphoribosy 52.3 24 0.00051 28.3 4.1 45 61-109 31-78 (175)
158 PRK01372 ddl D-alanine--D-alan 52.1 88 0.0019 26.8 8.0 36 73-109 51-86 (304)
159 cd01992 PP-ATPase N-terminal d 52.0 1.2E+02 0.0025 23.9 10.9 82 7-90 12-108 (185)
160 cd08162 MPP_PhoA_N Synechococc 51.9 33 0.00071 30.4 5.3 47 38-89 197-243 (313)
161 PRK13810 orotate phosphoribosy 51.6 34 0.00073 28.1 5.0 58 48-109 39-100 (187)
162 PRK08862 short chain dehydroge 51.6 1.4E+02 0.0029 24.6 9.2 73 9-86 17-91 (227)
163 TIGR00615 recR recombination p 51.5 85 0.0018 26.1 7.3 70 2-78 84-163 (195)
164 TIGR01133 murG undecaprenyldip 51.5 1.2E+02 0.0026 26.1 8.8 88 10-109 17-117 (348)
165 cd01967 Nitrogenase_MoFe_alpha 51.0 1.2E+02 0.0026 27.4 9.0 76 24-109 286-377 (406)
166 KOG3332|consensus 51.0 49 0.0011 28.3 5.8 59 26-84 69-142 (247)
167 PRK08190 bifunctional enoyl-Co 50.6 1E+02 0.0023 28.8 8.7 77 3-88 182-260 (466)
168 PRK00455 pyrE orotate phosphor 50.5 33 0.00072 28.1 4.8 42 64-109 48-91 (202)
169 COG0137 ArgG Argininosuccinate 50.4 1.5E+02 0.0032 27.4 9.2 73 16-90 23-124 (403)
170 TIGR01504 glyox_carbo_lig glyo 50.4 24 0.00052 34.0 4.5 52 62-114 188-239 (588)
171 PF02844 GARS_N: Phosphoribosy 50.3 46 0.00099 24.6 5.0 61 29-89 3-73 (100)
172 PRK05599 hypothetical protein; 50.1 1.3E+02 0.0029 24.7 8.6 71 11-86 14-85 (246)
173 COG1058 CinA Predicted nucleot 50.0 1.7E+02 0.0037 25.3 10.5 76 37-116 23-98 (255)
174 COG1540 Uncharacterized protei 49.8 25 0.00054 30.2 3.9 47 62-114 121-167 (252)
175 PRK07178 pyruvate carboxylase 49.8 89 0.0019 29.2 8.1 91 8-109 12-102 (472)
176 PRK05370 argininosuccinate syn 49.8 1.7E+02 0.0036 27.6 9.7 89 14-107 28-149 (447)
177 PF04273 DUF442: Putative phos 49.8 65 0.0014 24.0 5.9 52 37-88 16-67 (110)
178 TIGR00236 wecB UDP-N-acetylglu 49.5 19 0.00042 31.8 3.5 80 25-109 29-114 (365)
179 PF00148 Oxidored_nitro: Nitro 49.3 1.6E+02 0.0036 26.4 9.6 33 68-109 331-363 (398)
180 PLN02371 phosphoglucosamine mu 49.2 1.3E+02 0.0027 29.2 9.2 85 4-109 308-394 (583)
181 PRK03673 hypothetical protein; 49.1 2.2E+02 0.0047 26.3 10.7 72 40-115 26-97 (396)
182 TIGR03151 enACPred_II putative 48.7 1.7E+02 0.0038 25.7 9.4 13 204-216 288-300 (307)
183 cd03786 GT1_UDP-GlcNAc_2-Epime 48.7 74 0.0016 27.6 7.1 92 14-110 19-117 (363)
184 cd08550 GlyDH-like Glycerol_de 48.6 1.3E+02 0.0028 26.8 8.7 46 65-114 64-110 (349)
185 TIGR00200 cinA_nterm competenc 48.5 2.3E+02 0.0049 26.3 10.9 71 40-114 25-95 (413)
186 PRK14572 D-alanyl-alanine synt 48.3 47 0.001 29.6 5.8 35 75-110 85-119 (347)
187 PRK08591 acetyl-CoA carboxylas 47.9 73 0.0016 29.3 7.2 70 10-87 14-83 (451)
188 PRK07418 acetolactate synthase 47.9 29 0.00063 33.5 4.7 51 62-114 210-261 (616)
189 PRK06372 translation initiatio 47.6 1.5E+02 0.0033 25.6 8.5 88 28-118 89-198 (253)
190 cd07406 MPP_CG11883_N Drosophi 47.6 48 0.001 28.2 5.6 42 41-88 164-205 (257)
191 PF13528 Glyco_trans_1_3: Glyc 47.6 39 0.00085 29.0 5.1 37 68-111 84-120 (318)
192 TIGR01282 nifD nitrogenase mol 47.3 54 0.0012 30.8 6.2 31 69-108 395-425 (466)
193 PRK07206 hypothetical protein; 47.1 1.4E+02 0.003 27.0 8.8 40 68-111 60-99 (416)
194 TIGR00715 precor6x_red precorr 47.1 88 0.0019 26.9 7.1 86 12-112 14-99 (256)
195 PF01903 CbiX: CbiX; InterPro 47.0 27 0.00059 25.1 3.4 49 7-57 9-59 (105)
196 PRK14477 bifunctional nitrogen 47.0 1.3E+02 0.0028 30.9 9.2 32 69-109 380-411 (917)
197 PRK02842 light-independent pro 46.8 87 0.0019 28.9 7.4 18 69-86 351-368 (427)
198 cd01492 Aos1_SUMO Ubiquitin ac 46.6 1.3E+02 0.0028 24.6 7.8 75 5-81 3-91 (197)
199 PRK08462 biotin carboxylase; V 46.6 90 0.0019 28.7 7.5 37 49-87 47-85 (445)
200 PRK06725 acetolactate synthase 46.5 31 0.00067 33.1 4.6 49 62-112 200-249 (570)
201 PRK13947 shikimate kinase; Pro 46.3 15 0.00032 28.7 2.0 29 80-110 3-31 (171)
202 COG1323 Predicted nucleotidylt 46.2 1.4E+02 0.003 27.3 8.4 97 3-103 10-120 (358)
203 PF09370 TIM-br_sig_trns: TIM- 46.1 17 0.00037 31.7 2.4 58 25-86 151-220 (268)
204 PRK03670 competence damage-ind 45.9 1.9E+02 0.0042 24.8 11.2 70 41-113 26-95 (252)
205 PF06506 PrpR_N: Propionate ca 45.9 78 0.0017 25.3 6.3 37 63-109 111-147 (176)
206 PRK00934 ribose-phosphate pyro 45.7 57 0.0012 28.5 5.8 66 40-109 107-181 (285)
207 PRK09653 eutD phosphotransacet 45.5 2E+02 0.0044 25.5 9.4 39 4-49 22-61 (324)
208 COG2205 KdpD Osmosensitive K+ 45.5 1.1E+02 0.0024 31.0 8.2 78 4-90 258-346 (890)
209 TIGR01205 D_ala_D_alaTIGR D-al 45.4 71 0.0015 27.6 6.4 33 77-110 62-94 (315)
210 PRK08223 hypothetical protein; 45.4 94 0.002 27.4 7.0 86 25-111 28-150 (287)
211 TIGR03568 NeuC_NnaA UDP-N-acet 45.2 25 0.00055 31.6 3.6 83 24-109 28-121 (365)
212 cd06295 PBP1_CelR Ligand bindi 45.0 1.8E+02 0.0038 24.0 10.5 76 3-87 21-96 (275)
213 PRK05749 3-deoxy-D-manno-octul 44.9 2E+02 0.0043 25.9 9.4 88 9-110 65-152 (425)
214 PF02698 DUF218: DUF218 domain 44.7 85 0.0018 24.0 6.1 108 3-117 18-133 (155)
215 cd07410 MPP_CpdB_N Escherichia 44.6 54 0.0012 28.0 5.4 48 40-89 175-229 (277)
216 cd03784 GT1_Gtf_like This fami 44.4 35 0.00076 30.4 4.4 37 72-114 98-134 (401)
217 cd04946 GT1_AmsK_like This fam 44.4 2.4E+02 0.0052 25.4 11.6 91 9-110 247-339 (407)
218 KOG1198|consensus 44.4 72 0.0016 28.7 6.3 59 12-83 172-230 (347)
219 PRK08527 acetolactate synthase 44.3 37 0.00079 32.4 4.7 52 62-114 189-240 (563)
220 cd03812 GT1_CapH_like This fam 44.0 2E+02 0.0044 24.4 10.2 92 8-109 16-107 (358)
221 TIGR01362 KDO8P_synth 3-deoxy- 44.0 1.8E+02 0.004 25.2 8.4 41 49-89 115-155 (258)
222 cd07388 MPP_Tt1561 Thermus the 43.9 59 0.0013 27.4 5.4 43 44-86 142-187 (224)
223 PRK00509 argininosuccinate syn 43.9 1.3E+02 0.0027 27.9 7.9 74 15-90 20-121 (399)
224 cd07405 MPP_UshA_N Escherichia 43.7 56 0.0012 28.3 5.4 50 40-89 165-220 (285)
225 PRK07109 short chain dehydroge 43.6 2.3E+02 0.0049 24.9 9.4 73 10-87 21-94 (334)
226 PRK00934 ribose-phosphate pyro 43.6 64 0.0014 28.1 5.8 18 39-56 222-239 (285)
227 COG2242 CobL Precorrin-6B meth 43.4 1.2E+02 0.0025 25.1 6.9 81 23-117 57-140 (187)
228 PRK13820 argininosuccinate syn 43.3 1.2E+02 0.0025 28.1 7.6 73 17-92 22-123 (394)
229 cd07409 MPP_CD73_N CD73 ecto-5 43.2 55 0.0012 28.2 5.3 44 39-88 173-216 (281)
230 TIGR00083 ribF riboflavin kina 43.2 2.3E+02 0.005 24.9 10.2 77 8-89 15-109 (288)
231 PF03746 LamB_YcsF: LamB/YcsF 43.1 44 0.00096 28.7 4.5 57 47-110 100-161 (242)
232 TIGR01381 E1_like_apg7 E1-like 42.9 1.7E+02 0.0038 28.9 9.0 85 25-112 339-480 (664)
233 PRK12344 putative alpha-isopro 42.9 3E+02 0.0064 26.3 10.5 70 7-78 124-201 (524)
234 PRK05963 3-oxoacyl-(acyl carri 42.9 86 0.0019 27.3 6.5 62 46-108 37-103 (326)
235 cd03415 CbiX_CbiC Archaeal sir 42.9 1.4E+02 0.003 22.8 6.9 49 6-56 15-65 (125)
236 PRK04923 ribose-phosphate pyro 42.8 71 0.0015 28.5 6.0 70 37-109 113-194 (319)
237 TIGR00109 hemH ferrochelatase. 42.8 2.4E+02 0.0052 25.0 10.7 83 5-87 71-162 (322)
238 PLN02321 2-isopropylmalate syn 42.5 3.4E+02 0.0074 26.7 11.0 71 37-108 242-315 (632)
239 PRK13946 shikimate kinase; Pro 42.5 18 0.00039 29.1 2.0 29 79-109 11-39 (184)
240 PRK04527 argininosuccinate syn 42.3 1.6E+02 0.0034 27.3 8.3 91 24-115 26-146 (400)
241 cd07940 DRE_TIM_IPMS 2-isoprop 42.0 2.2E+02 0.0048 24.3 11.3 65 38-103 146-211 (268)
242 PF13439 Glyco_transf_4: Glyco 42.0 23 0.00049 26.7 2.4 87 7-111 15-107 (177)
243 PF14582 Metallophos_3: Metall 41.9 17 0.00038 31.2 1.8 24 64-87 192-215 (255)
244 TIGR00977 LeuA_rel 2-isopropyl 41.8 3.2E+02 0.007 26.1 11.4 42 37-78 156-197 (526)
245 TIGR01319 glmL_fam conserved h 41.7 3.1E+02 0.0067 25.9 10.8 26 141-166 211-236 (463)
246 cd06367 PBP1_iGluR_NMDA N-term 41.5 53 0.0012 28.9 5.1 53 60-112 45-97 (362)
247 COG2197 CitB Response regulato 41.4 1.3E+02 0.0027 24.9 7.0 60 8-74 59-118 (211)
248 TIGR00651 pta phosphate acetyl 41.4 2.5E+02 0.0054 24.8 9.2 76 6-88 7-110 (303)
249 TIGR01090 apt adenine phosphor 41.4 44 0.00096 26.5 4.1 41 65-109 33-73 (169)
250 COG2805 PilT Tfp pilus assembl 41.3 32 0.00069 30.9 3.4 45 43-88 148-208 (353)
251 PF01177 Asp_Glu_race: Asp/Glu 41.3 47 0.001 26.9 4.4 46 65-111 162-207 (216)
252 PRK12560 adenine phosphoribosy 41.2 47 0.001 27.1 4.3 40 65-109 39-78 (187)
253 PF02350 Epimerase_2: UDP-N-ac 41.1 1.3E+02 0.0029 26.8 7.6 81 24-109 8-95 (346)
254 PLN02735 carbamoyl-phosphate s 41.1 59 0.0013 34.0 5.9 64 5-85 592-656 (1102)
255 TIGR00514 accC acetyl-CoA carb 41.0 95 0.0021 28.6 6.8 68 10-87 14-83 (449)
256 PF13561 adh_short_C2: Enoyl-( 41.0 1.7E+02 0.0036 24.0 7.8 69 11-86 10-81 (241)
257 cd06338 PBP1_ABC_ligand_bindin 40.9 88 0.0019 27.0 6.3 58 52-112 45-102 (345)
258 TIGR02667 moaB_proteo molybden 40.9 1.8E+02 0.0039 23.0 10.5 78 25-104 5-89 (163)
259 cd02071 MM_CoA_mut_B12_BD meth 40.9 62 0.0013 24.2 4.7 14 75-88 99-112 (122)
260 PRK05597 molybdopterin biosynt 40.8 90 0.002 28.1 6.4 85 25-112 29-150 (355)
261 PRK05406 LamB/YcsF family prot 40.7 58 0.0013 28.1 4.9 54 51-110 105-163 (246)
262 cd03785 GT1_MurG MurG is an N- 40.6 2.4E+02 0.0051 24.2 9.2 92 9-111 15-118 (350)
263 TIGR00381 cdhD CO dehydrogenas 40.4 2.4E+02 0.0051 26.1 9.0 105 1-114 191-315 (389)
264 PRK11858 aksA trans-homoaconit 40.3 2.9E+02 0.0062 25.1 11.3 64 37-103 147-210 (378)
265 PRK10964 ADP-heptose:LPS hepto 40.2 2.3E+02 0.0049 24.6 8.8 24 78-109 253-276 (322)
266 cd07948 DRE_TIM_HCS Saccharomy 40.2 2.4E+02 0.0052 24.2 11.1 68 37-107 143-211 (262)
267 cd08551 Fe-ADH iron-containing 40.1 90 0.002 27.9 6.4 122 41-170 43-193 (370)
268 PF00862 Sucrose_synth: Sucros 40.0 21 0.00047 34.0 2.3 35 78-116 401-435 (550)
269 cd07408 MPP_SA0022_N Staphyloc 39.6 63 0.0014 27.4 5.0 46 42-89 165-212 (257)
270 COG0159 TrpA Tryptophan syntha 39.6 2.6E+02 0.0056 24.4 8.9 76 8-89 79-158 (265)
271 PRK12880 3-oxoacyl-(acyl carri 39.5 1.1E+02 0.0023 27.5 6.7 61 47-108 46-111 (353)
272 cd03089 PMM_PGM The phosphoman 39.1 2.6E+02 0.0055 25.8 9.3 62 44-110 221-294 (443)
273 TIGR02706 P_butyryltrans phosp 39.1 1.3E+02 0.0028 26.4 7.0 76 4-88 20-97 (294)
274 TIGR02432 lysidine_TilS_N tRNA 39.1 1.9E+02 0.0042 22.8 9.1 82 7-90 12-111 (189)
275 TIGR01367 pyrE_Therm orotate p 38.9 64 0.0014 26.3 4.8 42 64-109 42-85 (187)
276 PRK07742 phosphate butyryltran 38.9 2.5E+02 0.0053 24.7 8.8 77 4-88 22-100 (299)
277 cd06375 PBP1_mGluR_groupII Lig 38.7 2.9E+02 0.0064 25.5 9.7 102 2-107 153-258 (458)
278 PRK06827 phosphoribosylpyropho 38.5 1.2E+02 0.0026 27.9 6.8 68 39-109 150-234 (382)
279 cd00316 Oxidoreductase_nitroge 38.5 2.9E+02 0.0062 24.6 10.1 75 26-109 280-370 (399)
280 COG4567 Response regulator con 38.4 1.4E+02 0.003 24.2 6.3 66 44-123 3-69 (182)
281 PF13380 CoA_binding_2: CoA bi 38.2 45 0.00098 24.9 3.5 55 25-88 56-110 (116)
282 TIGR02931 anfK_nitrog Fe-only 38.0 3.1E+02 0.0068 25.6 9.7 31 70-109 378-410 (461)
283 cd08170 GlyDH Glycerol dehydro 38.0 2.1E+02 0.0045 25.4 8.3 102 64-169 63-170 (351)
284 cd03414 CbiX_SirB_C Sirohydroc 37.9 1.6E+02 0.0034 21.4 6.5 94 7-104 16-113 (117)
285 cd00886 MogA_MoaB MogA_MoaB fa 37.8 1.9E+02 0.0042 22.4 10.0 64 40-105 24-88 (152)
286 PF02254 TrkA_N: TrkA-N domain 37.7 1.1E+02 0.0023 22.0 5.4 13 7-19 73-85 (116)
287 COG0373 HemA Glutamyl-tRNA red 37.5 1.9E+02 0.0041 26.9 8.0 30 27-56 179-209 (414)
288 PRK02812 ribose-phosphate pyro 37.4 1.3E+02 0.0027 27.1 6.7 69 37-108 127-206 (330)
289 cd06274 PBP1_FruR Ligand bindi 37.4 2.3E+02 0.0049 23.1 9.4 75 4-87 11-87 (264)
290 cd06279 PBP1_LacI_like_3 Ligan 37.4 2.4E+02 0.0053 23.4 10.3 91 3-104 15-111 (283)
291 KOG0024|consensus 37.3 1.6E+02 0.0035 26.7 7.2 82 23-116 169-253 (354)
292 cd06336 PBP1_ABC_ligand_bindin 36.7 1.7E+02 0.0037 25.4 7.5 53 58-114 51-103 (347)
293 smart00854 PGA_cap Bacterial c 36.6 1.2E+02 0.0025 25.4 6.2 47 41-88 166-215 (239)
294 PLN02605 monogalactosyldiacylg 36.6 45 0.00098 29.8 3.8 46 66-115 88-139 (382)
295 PRK08155 acetolactate synthase 36.4 58 0.0013 31.0 4.7 51 62-113 197-247 (564)
296 COG0276 HemH Protoheme ferro-l 36.3 2.6E+02 0.0055 25.1 8.4 31 27-57 94-124 (320)
297 PLN00142 sucrose synthase 36.3 54 0.0012 33.1 4.6 49 64-116 391-442 (815)
298 PRK07831 short chain dehydroge 36.2 2.5E+02 0.0053 23.2 10.0 73 11-87 32-106 (262)
299 cd00419 Ferrochelatase_C Ferro 36.2 2E+02 0.0043 22.1 8.8 54 4-57 37-99 (135)
300 PF13941 MutL: MutL protein 36.0 3.8E+02 0.0083 25.3 10.6 18 149-166 223-240 (457)
301 PRK03731 aroL shikimate kinase 35.7 28 0.0006 27.2 2.1 28 80-109 4-31 (171)
302 cd01979 Pchlide_reductase_N Pc 35.7 1.9E+02 0.0041 26.3 7.8 32 69-109 336-367 (396)
303 TIGR00640 acid_CoA_mut_C methy 35.5 2E+02 0.0044 22.0 7.0 30 39-72 96-125 (132)
304 PF11548 Receptor_IA-2: Protei 35.5 50 0.0011 24.1 3.1 46 78-125 3-49 (91)
305 cd03416 CbiX_SirB_N Sirohydroc 35.4 1.6E+02 0.0035 20.8 7.3 50 6-56 14-65 (101)
306 PRK12815 carB carbamoyl phosph 35.4 74 0.0016 33.1 5.6 65 5-85 573-637 (1068)
307 PRK12879 3-oxoacyl-(acyl carri 35.4 1.5E+02 0.0034 25.5 7.0 62 46-108 38-104 (325)
308 PRK05858 hypothetical protein; 35.3 54 0.0012 31.1 4.3 53 61-114 188-240 (542)
309 PRK11914 diacylglycerol kinase 35.3 2.6E+02 0.0057 24.1 8.4 36 24-59 39-75 (306)
310 COG0353 RecR Recombinational D 35.3 1.2E+02 0.0026 25.3 5.7 75 3-78 86-164 (198)
311 TIGR02195 heptsyl_trn_II lipop 35.3 2.5E+02 0.0054 24.4 8.3 25 78-110 251-275 (334)
312 cd01999 Argininosuccinate_Synt 35.2 3.1E+02 0.0067 25.2 9.0 75 16-92 17-120 (385)
313 PRK08340 glucose-1-dehydrogena 35.2 2.6E+02 0.0055 23.1 9.0 70 11-86 14-84 (259)
314 PRK06139 short chain dehydroge 35.2 3.1E+02 0.0068 24.1 9.5 72 10-86 20-92 (330)
315 cd08171 GlyDH-like2 Glycerol d 35.2 2E+02 0.0044 25.5 7.8 69 41-114 41-111 (345)
316 PF01764 Lipase_3: Lipase (cla 35.1 52 0.0011 24.4 3.5 37 66-106 50-87 (140)
317 cd01025 TOPRIM_recR TOPRIM_rec 35.1 1.4E+02 0.003 22.5 5.7 70 2-78 6-85 (112)
318 KOG0781|consensus 34.8 1.1E+02 0.0025 29.2 6.1 50 37-87 455-505 (587)
319 TIGR00524 eIF-2B_rel eIF-2B al 34.6 2E+02 0.0042 25.5 7.4 91 28-118 121-244 (303)
320 cd08173 Gro1PDH Sn-glycerol-1- 34.6 1.9E+02 0.0042 25.5 7.5 95 63-165 63-164 (339)
321 cd06340 PBP1_ABC_ligand_bindin 34.5 1.9E+02 0.0042 25.1 7.5 59 51-112 43-101 (347)
322 TIGR02015 BchY chlorophyllide 34.5 2.3E+02 0.0049 26.2 8.2 29 72-109 349-377 (422)
323 PRK12569 hypothetical protein; 34.4 86 0.0019 27.0 4.9 56 51-112 108-168 (245)
324 TIGR03380 agmatine_aguA agmati 34.4 3.6E+02 0.0077 24.5 9.7 98 5-124 37-154 (357)
325 cd01973 Nitrogenase_VFe_beta_l 34.3 3.4E+02 0.0074 25.3 9.4 30 71-109 372-403 (454)
326 cd06364 PBP1_CaSR Ligand-bindi 34.3 3.8E+02 0.0081 25.2 9.8 102 1-107 165-270 (510)
327 PRK00923 sirohydrochlorin coba 34.3 1.9E+02 0.0042 21.4 7.3 47 9-56 19-67 (126)
328 PRK06217 hypothetical protein; 34.2 28 0.00061 27.8 1.9 27 81-109 4-30 (183)
329 cd06359 PBP1_Nba_like Type I p 34.2 1.1E+02 0.0025 26.3 5.9 58 52-112 39-96 (333)
330 TIGR01390 CycNucDiestase 2',3' 34.0 67 0.0015 31.4 4.8 54 37-90 184-240 (626)
331 cd03413 CbiK_C Anaerobic cobal 33.9 1.9E+02 0.0041 21.1 6.7 47 9-56 17-63 (103)
332 PLN02735 carbamoyl-phosphate s 33.8 1.1E+02 0.0024 32.1 6.4 17 68-84 88-104 (1102)
333 cd01486 Apg7 Apg7 is an E1-lik 33.7 2.2E+02 0.0048 25.4 7.5 76 38-115 12-143 (307)
334 TIGR03590 PseG pseudaminic aci 33.7 3.1E+02 0.0066 23.5 9.2 71 10-88 20-90 (279)
335 cd06347 PBP1_ABC_ligand_bindin 33.6 94 0.002 26.5 5.2 53 58-113 47-99 (334)
336 cd01542 PBP1_TreR_like Ligand- 33.5 2.6E+02 0.0056 22.6 10.6 74 4-86 11-86 (259)
337 PRK11081 tRNA guanosine-2'-O-m 33.5 1.3E+02 0.0029 25.4 6.0 30 27-56 20-52 (229)
338 CHL00162 thiG thiamin biosynth 33.4 2.2E+02 0.0047 24.9 7.2 64 3-76 176-240 (267)
339 PF13941 MutL: MutL protein 33.3 2.9E+02 0.0063 26.0 8.6 75 24-106 76-151 (457)
340 PF13793 Pribosyltran_N: N-ter 33.2 85 0.0018 23.6 4.3 24 82-110 3-26 (116)
341 PRK00035 hemH ferrochelatase; 33.2 3.4E+02 0.0074 23.9 9.7 53 5-57 71-127 (333)
342 cd07381 MPP_CapA CapA and rela 33.1 1.4E+02 0.0031 24.8 6.1 49 39-88 166-217 (239)
343 COG0119 LeuA Isopropylmalate/h 33.1 2.1E+02 0.0045 26.5 7.6 67 37-104 148-214 (409)
344 PRK14538 putative bifunctional 33.0 1.8E+02 0.0039 29.7 7.6 66 37-104 311-391 (838)
345 cd06361 PBP1_GPC6A_like Ligand 33.0 2.7E+02 0.006 25.2 8.4 102 1-106 150-259 (403)
346 PF05368 NmrA: NmrA-like famil 32.8 2.7E+02 0.0058 22.6 8.8 63 25-91 45-107 (233)
347 cd06348 PBP1_ABC_ligand_bindin 32.7 1.1E+02 0.0024 26.4 5.6 58 51-111 40-97 (344)
348 COG0528 PyrH Uridylate kinase 32.7 2.4E+02 0.0051 24.3 7.2 36 78-113 124-161 (238)
349 PF02608 Bmp: Basic membrane p 32.6 3E+02 0.0064 23.9 8.3 92 4-104 15-123 (306)
350 TIGR02329 propionate_PrpR prop 32.6 4.3E+02 0.0093 25.3 9.9 79 13-109 88-167 (526)
351 PRK09417 mogA molybdenum cofac 32.6 2.8E+02 0.0061 22.8 10.2 47 62-108 50-96 (193)
352 PF00072 Response_reg: Respons 32.5 64 0.0014 22.5 3.4 72 4-87 7-80 (112)
353 PRK14476 nitrogenase molybdenu 32.3 3.3E+02 0.0072 25.4 8.9 66 29-109 315-393 (455)
354 PLN02446 (5-phosphoribosyl)-5- 32.3 1.2E+02 0.0027 26.3 5.7 44 39-86 95-141 (262)
355 cd01539 PBP1_GGBP Periplasmic 32.2 3.2E+02 0.0068 23.2 11.2 79 4-87 11-91 (303)
356 TIGR02932 vnfK_nitrog V-contai 32.2 3.8E+02 0.0082 25.1 9.3 31 70-109 375-406 (457)
357 COG1454 EutG Alcohol dehydroge 32.1 3E+02 0.0066 25.2 8.4 40 63-107 71-112 (377)
358 cd06067 H2MP_MemB-H2evol Endop 32.1 1.6E+02 0.0036 22.4 5.9 48 7-57 13-60 (136)
359 cd01541 PBP1_AraR Ligand-bindi 31.9 2.9E+02 0.0062 22.6 10.6 80 3-87 10-92 (273)
360 PRK09186 flagellin modificatio 31.9 2.8E+02 0.0061 22.5 9.1 72 11-86 18-91 (256)
361 TIGR00973 leuA_bact 2-isopropy 31.8 4.5E+02 0.0098 24.9 11.5 66 37-103 148-215 (494)
362 PRK05855 short chain dehydroge 31.7 3.8E+02 0.0083 24.8 9.4 27 60-86 373-400 (582)
363 TIGR01142 purT phosphoribosylg 31.7 2.8E+02 0.006 24.6 8.1 62 10-88 11-72 (380)
364 PF13189 Cytidylate_kin2: Cyti 31.7 32 0.0007 27.6 1.9 29 82-111 2-30 (179)
365 COG0324 MiaA tRNA delta(2)-iso 31.6 37 0.00079 30.3 2.3 28 80-109 5-32 (308)
366 cd06316 PBP1_ABC_sugar_binding 31.6 3.1E+02 0.0067 22.9 10.8 76 4-86 11-89 (294)
367 PF00762 Ferrochelatase: Ferro 31.5 3.7E+02 0.008 23.8 9.6 81 5-85 66-155 (316)
368 TIGR03123 one_C_unchar_1 proba 31.5 78 0.0017 28.3 4.4 41 66-111 265-305 (318)
369 COG3150 Predicted esterase [Ge 31.4 2.5E+02 0.0054 23.2 6.8 60 46-110 26-86 (191)
370 cd00532 MGS-like MGS-like doma 31.1 2.1E+02 0.0046 20.9 10.0 91 8-113 12-107 (112)
371 PRK13011 formyltetrahydrofolat 31.0 3.6E+02 0.0078 23.5 8.6 21 66-86 153-173 (286)
372 COG2138 Sirohydrochlorin ferro 31.0 3.3E+02 0.0072 23.3 8.1 105 4-109 15-156 (245)
373 COG3453 Uncharacterized protei 30.8 1.8E+02 0.0039 22.5 5.6 84 31-114 11-96 (130)
374 PF02142 MGS: MGS-like domain 30.7 54 0.0012 23.3 2.8 88 10-110 2-95 (95)
375 TIGR01369 CPSaseII_lrg carbamo 30.7 1.5E+02 0.0033 30.8 6.9 65 5-85 572-636 (1050)
376 PRK07478 short chain dehydroge 30.7 3E+02 0.0065 22.5 9.5 72 11-87 20-92 (254)
377 PRK00536 speE spermidine synth 30.7 1.9E+02 0.0042 25.0 6.6 30 28-59 75-104 (262)
378 PRK00076 recR recombination pr 30.6 3.2E+02 0.0068 22.7 7.6 69 2-78 84-162 (196)
379 cd06346 PBP1_ABC_ligand_bindin 30.6 1.1E+02 0.0024 26.1 5.2 53 58-112 47-99 (312)
380 cd06366 PBP1_GABAb_receptor Li 30.5 85 0.0018 27.3 4.5 52 58-112 46-97 (350)
381 PRK04180 pyridoxal biosynthesi 30.5 2.9E+02 0.0064 24.5 7.7 72 6-82 190-263 (293)
382 PF00308 Bac_DnaA: Bacterial d 30.4 3.1E+02 0.0068 22.6 9.9 113 1-115 10-166 (219)
383 PRK07688 thiamine/molybdopteri 30.4 2.1E+02 0.0046 25.6 7.0 84 25-111 25-147 (339)
384 PRK06111 acetyl-CoA carboxylas 30.3 3E+02 0.0065 25.1 8.3 19 68-86 64-82 (450)
385 cd08174 G1PDH-like Glycerol-1- 30.2 3.5E+02 0.0075 23.8 8.4 130 25-165 26-161 (331)
386 TIGR03599 YloV DAK2 domain fus 30.1 2.8E+02 0.0061 26.6 8.1 58 36-105 348-405 (530)
387 cd01980 Chlide_reductase_Y Chl 30.1 3.8E+02 0.0081 24.6 8.8 29 72-109 344-372 (416)
388 TIGR03492 conserved hypothetic 30.1 1.6E+02 0.0034 26.9 6.3 94 6-110 9-118 (396)
389 PF13207 AAA_17: AAA domain; P 30.0 29 0.00062 25.2 1.2 27 81-109 2-28 (121)
390 PF01645 Glu_synthase: Conserv 29.7 1.1E+02 0.0025 27.9 5.2 47 8-54 256-302 (368)
391 PRK02277 orotate phosphoribosy 29.7 1.5E+02 0.0033 24.3 5.6 91 8-110 5-113 (200)
392 cd06341 PBP1_ABC_ligand_bindin 29.5 3.6E+02 0.0078 23.1 8.3 52 58-113 47-98 (341)
393 TIGR00534 OpcA opcA protein. T 29.4 1.8E+02 0.004 25.9 6.4 29 80-109 200-228 (311)
394 TIGR03217 4OH_2_O_val_ald 4-hy 29.4 4.1E+02 0.009 23.7 10.8 76 7-89 63-138 (333)
395 PRK07102 short chain dehydroge 29.3 3.1E+02 0.0067 22.2 9.0 71 10-86 14-84 (243)
396 PF04123 DUF373: Domain of unk 29.3 1.9E+02 0.0041 26.2 6.5 53 6-58 45-108 (344)
397 cd04962 GT1_like_5 This family 29.3 76 0.0016 27.4 4.0 94 7-112 15-118 (371)
398 COG1102 Cmk Cytidylate kinase 29.2 32 0.0007 28.1 1.4 18 93-110 13-30 (179)
399 PRK12999 pyruvate carboxylase; 29.2 5.7E+02 0.012 27.1 10.7 79 8-86 653-742 (1146)
400 PRK09420 cpdB bifunctional 2', 29.2 94 0.002 30.5 4.9 53 37-89 207-262 (649)
401 PRK13670 hypothetical protein; 29.1 1.8E+02 0.0039 26.7 6.5 77 8-88 18-104 (388)
402 PRK00131 aroK shikimate kinase 29.1 45 0.00098 25.6 2.3 30 78-109 4-33 (175)
403 PF00975 Thioesterase: Thioest 29.0 2.8E+02 0.006 22.2 7.1 42 61-106 46-89 (229)
404 PF06925 MGDG_synth: Monogalac 29.0 71 0.0015 25.1 3.4 50 63-116 74-127 (169)
405 PRK05867 short chain dehydroge 29.0 3.2E+02 0.007 22.3 9.5 72 10-86 22-94 (253)
406 PF03102 NeuB: NeuB family; I 28.9 1.9E+02 0.0042 24.7 6.3 90 26-130 114-209 (241)
407 PLN02369 ribose-phosphate pyro 28.9 2.3E+02 0.0049 25.0 6.9 70 37-109 97-179 (302)
408 TIGR01530 nadN NAD pyrophospha 28.8 93 0.002 29.8 4.7 46 38-89 172-217 (550)
409 cd08291 ETR_like_1 2-enoyl thi 28.8 1.9E+02 0.0042 24.7 6.4 13 202-214 302-314 (324)
410 PRK04182 cytidylate kinase; Pr 28.7 41 0.00089 26.1 2.0 28 81-110 3-30 (180)
411 PRK12475 thiamine/molybdopteri 28.5 2.7E+02 0.0059 24.9 7.4 84 25-111 25-147 (338)
412 cd06356 PBP1_Amide_Urea_BP_lik 28.5 1.8E+02 0.0038 25.2 6.2 50 58-110 47-96 (334)
413 PRK05647 purN phosphoribosylgl 28.5 3.3E+02 0.0072 22.3 8.7 59 25-85 29-87 (200)
414 TIGR02955 TMAO_TorT TMAO reduc 28.4 3.6E+02 0.0078 22.7 9.5 52 3-56 10-65 (295)
415 PLN02331 phosphoribosylglycina 28.3 3.5E+02 0.0075 22.5 8.1 60 25-86 27-86 (207)
416 PRK06194 hypothetical protein; 28.3 3.5E+02 0.0076 22.5 9.4 73 11-88 20-93 (287)
417 PRK07199 phosphoribosylpyropho 28.3 2.6E+02 0.0056 24.6 7.1 16 41-56 231-246 (301)
418 COG0703 AroK Shikimate kinase 28.2 58 0.0013 26.5 2.8 29 79-109 3-31 (172)
419 KOG3076|consensus 28.2 3.3E+02 0.0071 22.8 7.1 72 8-87 20-96 (206)
420 PRK00549 competence damage-ind 28.2 4.8E+02 0.01 24.0 10.8 71 41-115 26-96 (414)
421 COG0707 MurG UDP-N-acetylgluco 28.1 74 0.0016 28.8 3.7 40 72-117 85-126 (357)
422 COG3443 Predicted periplasmic 28.1 2.2E+02 0.0048 23.3 6.0 62 93-155 63-124 (193)
423 COG0157 NadC Nicotinate-nucleo 28.0 3.5E+02 0.0075 23.9 7.6 32 38-73 198-229 (280)
424 PRK12833 acetyl-CoA carboxylas 28.0 3.7E+02 0.008 25.0 8.5 38 49-86 48-85 (467)
425 PRK10834 vancomycin high tempe 28.0 2.7E+02 0.0058 23.9 6.9 99 3-109 62-165 (239)
426 cd06343 PBP1_ABC_ligand_bindin 27.9 1.5E+02 0.0033 25.8 5.7 60 51-113 47-106 (362)
427 cd01994 Alpha_ANH_like_IV This 27.8 3.4E+02 0.0073 22.1 9.4 82 24-109 23-118 (194)
428 PRK15427 colanic acid biosynth 27.7 4.6E+02 0.0099 23.7 11.0 91 9-110 239-333 (406)
429 cd00464 SK Shikimate kinase (S 27.7 48 0.001 25.1 2.1 27 81-109 2-28 (154)
430 KOG3347|consensus 27.6 72 0.0016 25.8 3.1 32 76-109 5-36 (176)
431 PF01202 SKI: Shikimate kinase 27.6 25 0.00055 27.4 0.6 14 96-109 8-21 (158)
432 PRK07677 short chain dehydroge 27.5 3.4E+02 0.0074 22.1 9.2 70 11-85 15-85 (252)
433 cd03802 GT1_AviGT4_like This f 27.5 1.4E+02 0.0029 25.2 5.2 94 8-115 23-117 (335)
434 PRK14851 hypothetical protein; 27.4 3.1E+02 0.0067 27.2 8.1 33 25-58 44-76 (679)
435 PF13460 NAD_binding_10: NADH( 27.4 2.4E+02 0.0052 21.7 6.3 51 39-91 52-103 (183)
436 TIGR01744 XPRTase xanthine pho 27.4 3.4E+02 0.0074 22.1 7.8 73 49-126 117-189 (191)
437 PRK08463 acetyl-CoA carboxylas 27.4 2.9E+02 0.0063 25.8 7.7 69 9-86 13-81 (478)
438 cd08172 GlyDH-like1 Glycerol d 27.4 3E+02 0.0066 24.4 7.6 50 62-115 60-110 (347)
439 TIGR00512 salvage_mtnA S-methy 27.3 1.8E+02 0.0039 26.2 6.0 79 36-114 166-268 (331)
440 TIGR03140 AhpF alkyl hydropero 27.3 2.7E+02 0.0058 26.2 7.5 96 5-108 130-238 (515)
441 cd06327 PBP1_SBP_like_1 Peripl 27.3 1.3E+02 0.0027 26.0 5.0 59 52-113 40-98 (334)
442 cd08199 EEVS 2-epi-5-epi-valio 27.3 3.1E+02 0.0067 24.6 7.6 71 41-115 45-124 (354)
443 PRK13397 3-deoxy-7-phosphohept 27.2 4.1E+02 0.0088 22.9 8.5 46 38-85 112-157 (250)
444 cd06345 PBP1_ABC_ligand_bindin 27.2 1.4E+02 0.003 25.8 5.3 52 58-112 47-98 (344)
445 PRK06466 acetolactate synthase 27.2 1.1E+02 0.0023 29.3 4.9 47 68-114 197-243 (574)
446 cd00830 KAS_III Ketoacyl-acyl 27.2 2E+02 0.0042 24.7 6.2 61 46-107 35-100 (320)
447 cd06281 PBP1_LacI_like_5 Ligan 27.1 3.5E+02 0.0076 22.1 10.2 93 4-104 11-111 (269)
448 PRK13789 phosphoribosylamine-- 27.1 2.7E+02 0.0059 25.6 7.4 39 68-109 58-96 (426)
449 COG0062 Uncharacterized conser 26.9 90 0.0019 26.1 3.7 24 81-105 53-76 (203)
450 COG0196 RibF FAD synthase [Coe 26.9 4.5E+02 0.0098 23.3 11.7 94 9-107 33-144 (304)
451 TIGR03853 matur_matur probable 26.8 42 0.00091 23.7 1.5 16 204-219 46-61 (77)
452 PF01008 IF-2B: Initiation fac 26.8 2.9E+02 0.0063 23.5 7.1 85 27-112 109-217 (282)
453 PF01075 Glyco_transf_9: Glyco 26.7 2.3E+02 0.005 23.2 6.3 79 11-110 127-207 (247)
454 PRK08199 thiamine pyrophosphat 26.7 98 0.0021 29.4 4.5 49 62-111 190-238 (557)
455 KOG0023|consensus 26.6 90 0.0019 28.3 3.8 35 13-52 196-230 (360)
456 PRK03482 phosphoglycerate muta 26.6 79 0.0017 25.8 3.4 44 63-109 32-75 (215)
457 TIGR02709 branched_ptb branche 26.5 4.4E+02 0.0095 23.0 8.4 97 3-118 6-108 (271)
458 TIGR02660 nifV_homocitr homoci 26.5 4.8E+02 0.01 23.5 11.7 68 38-108 145-213 (365)
459 COG0859 RfaF ADP-heptose:LPS h 26.4 4E+02 0.0086 23.4 8.1 24 78-109 251-274 (334)
460 cd06533 Glyco_transf_WecG_TagA 26.4 3.3E+02 0.0071 21.6 10.1 38 70-109 91-128 (171)
461 TIGR01835 HMG-CoA-S_prok 3-hyd 26.4 1.2E+02 0.0027 27.3 4.9 31 78-108 68-98 (379)
462 PRK08611 pyruvate oxidase; Pro 26.4 97 0.0021 29.7 4.4 48 62-112 189-236 (576)
463 TIGR02483 PFK_mixed phosphofru 26.4 4.7E+02 0.01 23.3 11.4 63 28-92 166-229 (324)
464 PRK12435 ferrochelatase; Provi 26.3 3.8E+02 0.0083 23.7 7.9 30 28-57 83-112 (311)
465 cd08551 Fe-ADH iron-containing 26.3 4.7E+02 0.01 23.3 13.3 55 30-85 4-58 (370)
466 PRK08334 translation initiatio 26.3 2.1E+02 0.0046 26.1 6.3 76 36-111 179-278 (356)
467 PLN02871 UDP-sulfoquinovose:DA 26.3 1.1E+02 0.0025 28.0 4.7 95 6-113 76-176 (465)
468 cd00758 MoCF_BD MoCF_BD: molyb 26.3 2E+02 0.0042 21.7 5.4 61 40-105 23-84 (133)
469 PRK09288 purT phosphoribosylgl 26.2 4.7E+02 0.01 23.3 8.9 21 68-88 65-85 (395)
470 cd06268 PBP1_ABC_transporter_L 26.1 2.2E+02 0.0048 23.1 6.1 52 58-113 47-98 (298)
471 PRK14498 putative molybdopteri 26.1 6.1E+02 0.013 24.6 10.5 98 2-105 164-278 (633)
472 cd00827 init_cond_enzymes "ini 26.1 1.7E+02 0.0038 25.1 5.7 45 63-107 49-98 (324)
473 KOG0745|consensus 26.0 55 0.0012 31.0 2.5 37 78-116 226-263 (564)
474 cd08182 HEPD Hydroxyethylphosp 25.9 2.4E+02 0.0052 25.2 6.7 36 64-103 63-99 (367)
475 PTZ00314 inosine-5'-monophosph 25.9 5.5E+02 0.012 24.3 9.3 45 6-54 265-309 (495)
476 cd07412 MPP_YhcR_N Bacillus su 25.9 1.4E+02 0.0029 25.9 4.9 49 40-88 183-239 (288)
477 PLN02199 shikimate kinase 25.9 80 0.0017 28.1 3.4 46 61-109 84-131 (303)
478 PRK09860 putative alcohol dehy 25.9 2E+02 0.0044 26.0 6.2 25 64-88 74-99 (383)
479 PRK15452 putative protease; Pr 25.8 4.9E+02 0.011 24.3 8.8 100 4-117 41-146 (443)
480 cd07766 DHQ_Fe-ADH Dehydroquin 25.8 4.5E+02 0.0097 22.9 10.5 94 10-110 10-109 (332)
481 PF01171 ATP_bind_3: PP-loop f 25.8 3.4E+02 0.0073 21.5 9.6 81 8-90 13-108 (182)
482 PRK08322 acetolactate synthase 25.7 87 0.0019 29.6 3.9 52 62-114 182-233 (547)
483 PRK05805 phosphate butyryltran 25.7 4.6E+02 0.0099 23.0 10.1 75 4-88 24-101 (301)
484 cd08190 HOT Hydroxyacid-oxoaci 25.6 2.6E+02 0.0056 25.6 6.9 40 44-84 47-86 (414)
485 PRK05784 phosphoribosylamine-- 25.5 2.9E+02 0.0063 26.1 7.3 20 69-88 60-79 (486)
486 TIGR00639 PurN phosphoribosylg 25.5 3.7E+02 0.0081 21.9 9.0 60 25-86 28-87 (190)
487 cd03812 GT1_CapH_like This fam 25.5 4.1E+02 0.009 22.4 9.1 86 9-110 209-295 (358)
488 PF01729 QRPTase_C: Quinolinat 25.4 3.6E+02 0.0077 21.6 8.1 45 38-87 90-136 (169)
489 KOG1200|consensus 25.4 3.4E+02 0.0073 23.1 6.8 51 25-78 39-89 (256)
490 PLN02573 pyruvate decarboxylas 25.4 1.2E+02 0.0025 29.2 4.8 47 68-114 215-261 (578)
491 cd01485 E1-1_like Ubiquitin ac 25.4 1.6E+02 0.0034 24.1 5.0 57 25-82 20-92 (198)
492 TIGR03457 sulphoacet_xsc sulfo 25.3 99 0.0021 29.6 4.3 50 62-112 182-231 (579)
493 TIGR03815 CpaE_hom_Actino heli 25.3 2.1E+02 0.0045 25.0 6.1 72 29-104 45-118 (322)
494 PRK08654 pyruvate carboxylase 25.3 3.1E+02 0.0068 25.9 7.6 70 9-86 13-82 (499)
495 TIGR03669 urea_ABC_arch urea A 25.3 4E+02 0.0087 23.8 8.0 57 51-110 41-97 (374)
496 PRK14497 putative molybdopteri 25.2 4.7E+02 0.01 25.3 8.7 98 2-105 157-271 (546)
497 PRK14072 6-phosphofructokinase 25.2 4.4E+02 0.0094 24.4 8.3 60 28-89 184-248 (416)
498 PRK07878 molybdopterin biosynt 25.2 2.3E+02 0.0051 25.8 6.5 84 25-111 43-163 (392)
499 PRK13809 orotate phosphoribosy 25.2 1.3E+02 0.0027 25.1 4.3 90 2-109 1-94 (206)
500 PRK08327 acetolactate synthase 25.1 1.3E+02 0.0029 28.7 5.1 49 62-111 206-254 (569)
No 1
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=100.00 E-value=3.8e-56 Score=381.35 Aligned_cols=213 Identities=24% Similarity=0.368 Sum_probs=198.0
Q ss_pred CCCCHhhHHHHHHHHHhhhhcCCCcEEEEEEecCcchH--HHHHHHHhCCCCEEEEEecCC--CCCHHHHHHHHHHHHHh
Q psy9408 1 MSINPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCK--EILQIAMAMGVDRAILIETDT--ILQSLSVAKLLQVIVKK 76 (219)
Q Consensus 1 ~~iNp~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~--~~lr~~~a~GaD~v~~v~~~~--~~d~~~~A~~la~~ik~ 76 (219)
|+|||||++|||+|+||||+.| |++|++++|||++++ +.+|++++||||++|+++|+. +.|++++|++||+++++
T Consensus 32 ~~iN~~D~~AlE~Alrlke~~~-g~~Vtvvs~Gp~~a~~~~~lr~aLAmGaD~avli~d~~~~g~D~~~tA~~La~ai~~ 110 (256)
T PRK03359 32 AKISQYDLNAIEAACQLKQQAA-EAQVTALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQK 110 (256)
T ss_pred cccChhhHHHHHHHHHHhhhcC-CCEEEEEEECCcchhhHHHHHHHHHcCCCEEEEEecCcccCcCHHHHHHHHHHHHHH
Confidence 5899999999999999999863 479999999998865 679999999999999999874 67999999999999999
Q ss_pred cCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccceeEEE-EeeCCeEEEEEEcCCeEEEEEEcCCEEEEEecCCCCCCC
Q psy9408 77 ENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIV-LKKNNKILVTQEIEDGKETILLSLPAIITTDLRMNEPRY 155 (219)
Q Consensus 77 ~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~-~~~~~~~~~~R~~~gG~~~~~~~~P~vvtv~~~~~~pr~ 155 (219)
.+|||||||.+|+|++++||||+||++||||++|+|.+++ ++ ++.++++|..++|.+++++++|||+||..+.|+|||
T Consensus 111 ~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~l~~~~-~~~v~v~r~~e~g~e~ve~~lPavvtV~~~~n~PR~ 189 (256)
T PRK03359 111 AGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSKIISLT-DDTLTVERELEDEVETLSIPLPAVIAVSTDINSPQI 189 (256)
T ss_pred hCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEEEEEec-CCEEEEEEEcCCeEEEEEEcCCEEEEEeCCCCCCCC
Confidence 9999999999999999999999999999999999999994 67 889999999999999999999999999999999999
Q ss_pred CCHHHHHHHccCcceEeeccccCCcCCCCeEEEEEeeccCCCCeeEe-c-----hHHHHHHHHhhc
Q psy9408 156 VTLMNIIKARKKNINIFKIDELNVNINTGLNIIKVKESHKNNLGIKV-K-----NVIELIDKLKNE 215 (219)
Q Consensus 156 p~l~~~~~A~~~~i~~~~~~~l~~~~~~~~~v~~~~~p~~~~~~~~~-~-----~~~~l~~~L~~~ 215 (219)
|||++||+|+||||++|+++|||+++.+++++.++++|++++++.++ + .+++|++.|+++
T Consensus 190 psl~~i~~A~kk~i~~~~~~dlg~~~~~~~~~~~~~~p~~~~~~~~i~~g~~~e~a~~lv~~L~~~ 255 (256)
T PRK03359 190 PSMKAILGAAKKPVQVWSAADIGFNAEPAWSEQQVAAPKQRERQRIVIEGDGEEQIAAFAENLRKI 255 (256)
T ss_pred CCHHHHHHhcCCCceEeCHHHcCCCcCCCcEEEEEecCCCCcCcEEEecCCcHHHHHHHHHHHHhh
Confidence 99999999999999999999999987678889999999988777775 3 379999999864
No 2
>PRK12342 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-54 Score=371.78 Aligned_cols=211 Identities=26% Similarity=0.364 Sum_probs=195.1
Q ss_pred CCCCHhhHHHHHHHHHhhhhcCCCcEEEEEEecCcchHHH--HHHHHhCCCCEEEEEecCC--CCCHHHHHHHHHHHHHh
Q psy9408 1 MSINPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEI--LQIAMAMGVDRAILIETDT--ILQSLSVAKLLQVIVKK 76 (219)
Q Consensus 1 ~~iNp~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~--lr~~~a~GaD~v~~v~~~~--~~d~~~~A~~la~~ik~ 76 (219)
|+|||||++|||+|+||| ++ |++|++++|||+.+++. +|++++||+|++|+++|+. +.|++++|++||+++++
T Consensus 31 ~~iNp~D~~AlE~AlrLk-~~--g~~Vtvls~Gp~~a~~~~l~r~alamGaD~avli~d~~~~g~D~~ata~~La~~i~~ 107 (254)
T PRK12342 31 AKISQFDLNAIEAASQLA-TD--GDEIAALTVGGSLLQNSKVRKDVLSRGPHSLYLVQDAQLEHALPLDTAKALAAAIEK 107 (254)
T ss_pred ccCChhhHHHHHHHHHHh-hc--CCEEEEEEeCCChHhHHHHHHHHHHcCCCEEEEEecCccCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999 55 47999999999875444 4889999999999999764 67999999999999999
Q ss_pred cCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccceeEEEEeeCCeEEEEEEcCCeEEEEEEcCCEEEEEecCCCCCCCC
Q psy9408 77 ENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIVLKKNNKILVTQEIEDGKETILLSLPAIITTDLRMNEPRYV 156 (219)
Q Consensus 77 ~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~~~~~~~~~R~~~gG~~~~~~~~P~vvtv~~~~~~pr~p 156 (219)
.+|||||||.+|.|++++||||+||++||||++|+|.+++++ ++.++++|..++|.+++++++|||+||+++.|+||||
T Consensus 108 ~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~~~~~-~~~~~v~r~~e~g~e~v~~~lPavvtv~~~~n~PR~p 186 (254)
T PRK12342 108 IGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSKIQRQ-GNKLIVERTLEDDVEVLELSLPAVLCVTSDINVPRIP 186 (254)
T ss_pred hCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEEEEEe-CCEEEEEEEcCCeEEEEEEcCCEEEEEeCCCCCCCCC
Confidence 999999999999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred CHHHHHHHccCcceEeeccccCCcC-CCCeEEEEEeeccCCCCe-eEec-----hHHHHHHHHhhc
Q psy9408 157 TLMNIIKARKKNINIFKIDELNVNI-NTGLNIIKVKESHKNNLG-IKVK-----NVIELIDKLKNE 215 (219)
Q Consensus 157 ~l~~~~~A~~~~i~~~~~~~l~~~~-~~~~~v~~~~~p~~~~~~-~~~~-----~~~~l~~~L~~~ 215 (219)
|++++|+|+|++|++|+++|||++. +|++++.++++|++++++ .+++ .+++|++.|+++
T Consensus 187 sl~~i~~A~kk~i~~~~~~dlg~~~~~~~~~v~~~~~p~~~~~~~~~~~g~~~e~a~~l~~~L~~~ 252 (254)
T PRK12342 187 SMKAILGAGKKPVTQWQASDIGWSQSAPLAELVGIRVPPQTERKHIILDNDSPEAIAELAEHLKKA 252 (254)
T ss_pred CHHHHHHhcCCCceEeCHHHcCCCCCCCceEEEEEeCCCcccCccEEecCChHHHHHHHHHHHHHh
Confidence 9999999999999999999999875 689999999999876666 6654 489999999874
No 3
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=100.00 E-value=4e-55 Score=374.25 Aligned_cols=218 Identities=43% Similarity=0.674 Sum_probs=203.7
Q ss_pred CCCCHhhHHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCC--CCCHHHHHHHHHHHHHhcC
Q psy9408 1 MSINPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDT--ILQSLSVAKLLQVIVKKEN 78 (219)
Q Consensus 1 ~~iNp~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~--~~d~~~~A~~la~~ik~~~ 78 (219)
++|||||++|||+|+||+|+ +.+++|++++|||+.+++.+|+|++||+|++|+++|+. +.|++++|++|++++++++
T Consensus 33 ~~in~~D~~AvEeAlrLke~-~~~~eV~vlt~Gp~~a~~~lr~aLAmGaDraili~d~~~~~~d~~~ta~~Laa~~~~~~ 111 (260)
T COG2086 33 LSINPFDLNAVEEALRLKEK-GYGGEVTVLTMGPPQAEEALREALAMGADRAILITDRAFAGADPLATAKALAAAVKKIG 111 (260)
T ss_pred cccChhhHHHHHHHHHhhcc-CCCceEEEEEecchhhHHHHHHHHhcCCCeEEEEecccccCccHHHHHHHHHHHHHhcC
Confidence 57999999999999999995 23689999999999999999999999999999999754 7899999999999999999
Q ss_pred CCEEEEcccccCCCcCcHHHHHHHHcCCCcccceeEEEEeeCCeEEEEEEcCCeEEEEEEcCCEEEEEecCCCCCCCCCH
Q psy9408 79 PQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIVLKKNNKILVTQEIEDGKETILLSLPAIITTDLRMNEPRYVTL 158 (219)
Q Consensus 79 ~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~~~~~~~~~R~~~gG~~~~~~~~P~vvtv~~~~~~pr~p~l 158 (219)
+||||+|.+++|++++|+|++||++||||++|+|.++++.++++++++|..++|.+++++++|||+|+..+.|+||||||
T Consensus 112 ~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~~i~~~dg~~v~v~R~le~g~e~~e~~LPaVvtv~~~~n~PR~psl 191 (260)
T COG2086 112 PDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVSKIEIVDGGKVTVERELEGGLETVEAPLPAVVTVDLRINEPRYPSL 191 (260)
T ss_pred CCEEEEecccccCCccchHHHHHHHhCCceeeeEEEEEEcCCCeEEEEEEcCCceEEEEccCCEEEEeccccCCCCCCCH
Confidence 99999999999999999999999999999999999999742779999999999999999999999999999999999999
Q ss_pred HHHHHHccCcceEeeccccC---CcCCCCeEEEEEeeccCCCCeeEech-----HHHHHHHHhhcCCCC
Q psy9408 159 MNIIKARKKNINIFKIDELN---VNINTGLNIIKVKESHKNNLGIKVKN-----VIELIDKLKNEAKII 219 (219)
Q Consensus 159 ~~~~~A~~~~i~~~~~~~l~---~~~~~~~~v~~~~~p~~~~~~~~~~~-----~~~l~~~L~~~~~~~ 219 (219)
+++|+|+|+||..|+++|+| ....|++++.++++|+.|+.+.++.+ +++|++.|++++.++
T Consensus 192 ~~im~A~kk~v~~~~~~d~g~~~~~~~s~~~v~~~~~~~~r~~~~~v~~~~~e~a~~lv~~L~~~~~i~ 260 (260)
T COG2086 192 PGIMAAKKKPVKKWSLADLGLNVGLAGSPLKVVKVTPPPERKAGVKVKDGPEEIAAELVEKLKEEGVIL 260 (260)
T ss_pred HHHHHhccCCceeccHhHhcccccccCCcceeeeccCCccccCceEecCcHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999 34579999999999999988887765 899999999987764
No 4
>KOG3180|consensus
Probab=100.00 E-value=1.7e-48 Score=315.44 Aligned_cols=216 Identities=50% Similarity=0.765 Sum_probs=205.5
Q ss_pred CCCCHhhHHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecC--CCCCHHHHHHHHHHHHHhcC
Q psy9408 1 MSINPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETD--TILQSLSVAKLLQVIVKKEN 78 (219)
Q Consensus 1 ~~iNp~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~--~~~d~~~~A~~la~~ik~~~ 78 (219)
|.|||||+-|+|+|.||+|+. -..+|+|+++|+..+++.+|.|+++|+|+.++++.. ..+.|..+|++|++++.+++
T Consensus 36 ~SmNPF~eIAvEEAvrlKEk~-l~eeviavs~G~aqs~~ilRt~LA~Gadr~~hv~~~~~~~lepl~vAKiLk~~vekek 114 (254)
T KOG3180|consen 36 HSMNPFCEIAVEEAVRLKEKK-LAEEVIAVSIGPAQSQEILRTALAKGADRGVHVEVVGAEELEPLHVAKILKKLVEKEK 114 (254)
T ss_pred cccCchHHHHHHHHHhHhhhh-hhheEEEEecCccchHHHHHHHHhccCCceeEEecCchhhccchHHHHHHHHHHHhhc
Confidence 579999999999999999974 356899999999999999999999999999999954 36899999999999999999
Q ss_pred CCEEEEcccccCCCcCcHHHHHHHHcCCCcccceeEEEEeeCCeEEEEEEcCCeEEEEEEcCCEEEEEecCCCCCCCCCH
Q psy9408 79 PQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIVLKKNNKILVTQEIEDGKETILLSLPAIITTDLRMNEPRYVTL 158 (219)
Q Consensus 79 ~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~~~~~~~~~R~~~gG~~~~~~~~P~vvtv~~~~~~pr~p~l 158 (219)
+|+||+|.|++|.|..|.++|+|+.||||+.|++..++.++++.++++|+++||-+++++++|+|+|..-..|.|||.+|
T Consensus 115 ~~lVllGKQAIDDD~nqTgqmlA~lL~WPQ~t~askV~~~~~~~~~VtREIDgGletl~~~lPaVittDLRLN~PRya~L 194 (254)
T KOG3180|consen 115 SDLVLLGKQAIDDDCNQTGQMLAALLGWPQATFASKVELEGDKRVKVTREIDGGLETLKVKLPAVITTDLRLNTPRYATL 194 (254)
T ss_pred CCEEEEcccccccchhhhHHHHHHHhCCcccccceeEEEcCCCcEEEEEEecCChhheeecCceEEEeecccCCcccccc
Confidence 99999999999999999999999999999999999999995566999999999999999999999999999999999999
Q ss_pred HHHHHHccCcceEeeccccCCcCCCCeEEEEEeeccCCCCeeEechHHHHHHHHhhcCC
Q psy9408 159 MNIIKARKKNINIFKIDELNVNINTGLNIIKVKESHKNNLGIKVKNVIELIDKLKNEAK 217 (219)
Q Consensus 159 ~~~~~A~~~~i~~~~~~~l~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~l~~~L~~~~~ 217 (219)
+++|+|+|+|+..++..||+++.+|.+++++++.|+.|+.|.+++++++|++.|++.+.
T Consensus 195 pniMKAkkkpl~k~~~~dl~Vdi~~~l~~vsv~ePp~r~~gv~v~svdelv~kLKe~g~ 253 (254)
T KOG3180|consen 195 PNIMKAKKKPLKKMTIKDLGVDITPQLETVSVEEPPQRQAGVMVKSVDELVAKLKELGA 253 (254)
T ss_pred HHHHHhccCCcccCCHHHcCcccccceEEEEecCCCcccCCceeeeHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999998765
No 5
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=100.00 E-value=3.3e-34 Score=238.67 Aligned_cols=169 Identities=46% Similarity=0.717 Sum_probs=157.0
Q ss_pred CCCHhhHHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCC--CCCHHHHHHHHHHHHHhcCC
Q psy9408 2 SINPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDT--ILQSLSVAKLLQVIVKKENP 79 (219)
Q Consensus 2 ~iNp~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~--~~d~~~~A~~la~~ik~~~~ 79 (219)
+++|++.++|+++++++++. |.+|+++++|+..+++.++++.+||+|++|+++++. .|+++.|+++|++++++.+|
T Consensus 32 vi~e~~~~~l~ea~~la~~~--g~~v~av~~G~~~~~~~~~~l~~~G~d~V~~~~~~~~~~~~~e~~a~al~~~i~~~~p 109 (202)
T cd01714 32 IINPYDEYAVEEALRLKEKY--GGEVTVVSMGPPQAEEALREALAMGADRAILVSDRAFAGADTLATAKALAAAIKKIGV 109 (202)
T ss_pred cCChHhHHHHHHHHHhhhhc--CCEEEEEEECCHHHHHHHHHHHHcCCCEEEEEecccccCCChHHHHHHHHHHHHHhCC
Confidence 78999999999999998876 368999999986456778888899999999999765 68999999999999999999
Q ss_pred CEEEEcccccCCCcCcHHHHHHHHcCCCcccceeEEEEeeCCeEEEEEEcCCeEEEEEEcCCEEEEEecCCCCCCCCCHH
Q psy9408 80 QLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIVLKKNNKILVTQEIEDGKETILLSLPAIITTDLRMNEPRYVTLM 159 (219)
Q Consensus 80 dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~~~~~~~~~R~~~gG~~~~~~~~P~vvtv~~~~~~pr~p~l~ 159 (219)
|+||+|+++.|+++++++|+||++||+|++++|++++++ ++.++++|+.|+|+.+++++.|+|+||+++.|+|+.|+|+
T Consensus 110 ~lVL~~~t~~~~~grdlaprlAarLga~lvsdv~~l~~~-~~~~~~~r~~~gG~~~~~~~~p~VitVr~g~f~~~~~~~~ 188 (202)
T cd01714 110 DLILTGKQSIDGDTGQVGPLLAELLGWPQITYVSKIEIE-GGKVTVERELEGGVETVEVKLPAVITVDLGINEPRYPSLP 188 (202)
T ss_pred CEEEEcCCcccCCcCcHHHHHHHHhCCCccceEEEEEEe-CCEEEEEEEcCCcEEEEEecCCEEEEEECCCCCCCCCCHH
Confidence 999999999988899999999999999999999999998 8999999999999987777779999999999999999999
Q ss_pred HHHHHccCcceEee
Q psy9408 160 NIIKARKKNINIFK 173 (219)
Q Consensus 160 ~~~~A~~~~i~~~~ 173 (219)
++|+|+++||+.|+
T Consensus 189 ~~~~a~~~~~~~~~ 202 (202)
T cd01714 189 GIMKAKKKPIEVVS 202 (202)
T ss_pred HHHHhcCCCCEeeC
Confidence 99999999999985
No 6
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=100.00 E-value=2e-31 Score=217.74 Aligned_cols=162 Identities=34% Similarity=0.486 Sum_probs=144.2
Q ss_pred CCCCHhhHHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCC--CCCHHHHHHHHHHHHHhcC
Q psy9408 1 MSINPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDT--ILQSLSVAKLLQVIVKKEN 78 (219)
Q Consensus 1 ~~iNp~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~--~~d~~~~A~~la~~ik~~~ 78 (219)
+++||+|.++|+.|++|++ . +++|+++++|+...+..++.+++||+|++|+++++. .++++.|+++|++++++.+
T Consensus 15 ~~l~~~~~e~l~~A~~l~~-~--~~~v~~v~~G~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~a~~l~~~i~~~~ 91 (181)
T cd01985 15 LVLNPLDLEAVEAALRLKE-Y--GGEVTALVIGPPAAEVALREALAMGADKVLLVEDPALAGYDPEATAKALAALIKKEK 91 (181)
T ss_pred cccCHhhHHHHHHHHHHhh-c--CCeEEEEEECChHHHHHHHHHHHhCCCEEEEEecCcccCCChHHHHHHHHHHHHHhC
Confidence 5799999999999999998 4 468999999987555556889999999999999764 6899999999999999999
Q ss_pred CCEEEEcccccCCCcCcHHHHHHHHcCCCcccceeEEEEeeCCeEEEEEEcCCeEE--EEEEc-CCEEEEEecCCCCCCC
Q psy9408 79 PQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIVLKKNNKILVTQEIEDGKE--TILLS-LPAIITTDLRMNEPRY 155 (219)
Q Consensus 79 ~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~~~~~~~~~R~~~gG~~--~~~~~-~P~vvtv~~~~~~pr~ 155 (219)
||+||+|+++. +++++|+||++||+|++++|++++.+ ++.++++|+.|+|+. +++++ .|+|+|++++.|+|++
T Consensus 92 p~~Vl~g~t~~---g~~la~rlA~~L~~~~vsdv~~l~~~-~~~~~~~r~~~~g~~~~~~~~~~~p~v~tv~~~~~~~~~ 167 (181)
T cd01985 92 PDLILAGATSI---GKQLAPRVAALLGVPQISDVTKLEID-GGDLTVTRPIYAGNGLETVESPDLPAVITVRPGAFEPRY 167 (181)
T ss_pred CCEEEECCccc---ccCHHHHHHHHhCCCcceeEEEEEEe-CCEEEEEEEccCCCeEEEEEECCCCEEEEecCCCCCCCC
Confidence 99999999996 56799999999999999999999998 889999999998874 66666 7999999999999999
Q ss_pred CCHHHHHHHccCcceEee
Q psy9408 156 VTLMNIIKARKKNINIFK 173 (219)
Q Consensus 156 p~l~~~~~A~~~~i~~~~ 173 (219)
|+.++ ++++|++++
T Consensus 168 ~~~~~----~~~~i~~~~ 181 (181)
T cd01985 168 PSGPG----KKKPVEKVS 181 (181)
T ss_pred CCCCC----CCCCCEecC
Confidence 99766 677777653
No 7
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=99.97 E-value=8.6e-31 Score=210.74 Aligned_cols=146 Identities=30% Similarity=0.422 Sum_probs=127.7
Q ss_pred CCCHhhHHHHHHHHHhhhhcCCCcEEEEEEecC-cchHHHHHHHHh-CCCCEEEEEecCC--CCCHHHHHHHHHHHHHhc
Q psy9408 2 SINPFDEIAIESAIRLRESSNKIKEIIAISCGN-KKCKEILQIAMA-MGVDRAILIETDT--ILQSLSVAKLLQVIVKKE 77 (219)
Q Consensus 2 ~iNp~D~~Ale~A~~l~e~~g~g~~V~av~~G~-~~~~~~lr~~~a-~GaD~v~~v~~~~--~~d~~~~A~~la~~ik~~ 77 (219)
.+||+|.++|++|++|+++. |.+|+++++|+ +++++.++++++ ||+|++|+++++. .++++.|+++|++++++.
T Consensus 12 ~l~~~~~e~l~~A~~La~~~--g~~v~av~~G~~~~~~~~l~~~l~~~G~d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~ 89 (164)
T PF01012_consen 12 RLNPVSLEALEAARRLAEAL--GGEVTAVVLGPAEEAAEALRKALAKYGADKVYHIDDPALAEYDPEAYADALAELIKEE 89 (164)
T ss_dssp EE-HHHHHHHHHHHHHHHCT--TSEEEEEEEETCCCHHHHHHHHHHSTTESEEEEEE-GGGTTC-HHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhc--CCeEEEEEEecchhhHHHHhhhhhhcCCcEEEEecCccccccCHHHHHHHHHHHHHhc
Confidence 58999999999999999987 47999999997 567888999999 9999999999775 689999999999999999
Q ss_pred CCCEEEEcccccCCCcCcHHHHHHHHcCCCcccceeEEEEeeCCeEEEEEEcCCeEEEEEEcCC---EEEEEecCCCCC
Q psy9408 78 NPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIVLKKNNKILVTQEIEDGKETILLSLP---AIITTDLRMNEP 153 (219)
Q Consensus 78 ~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~~~~~~~~~R~~~gG~~~~~~~~P---~vvtv~~~~~~p 153 (219)
+||+||+|+++.|++ ++|+||++||+|++++|++++.+ ++.++++|+.|+|+...++..| +|+|++++.|+|
T Consensus 90 ~~~lVl~~~t~~g~~---la~~lA~~L~~~~v~~v~~l~~~-~~~~~~~r~~~gG~~~~~~~~~~~~~v~tv~~g~f~P 164 (164)
T PF01012_consen 90 GPDLVLFGSTSFGRD---LAPRLAARLGAPLVTDVTDLEVE-DGGLVVTRPVYGGKVVATVRLPSPPAVVTVRPGAFEP 164 (164)
T ss_dssp T-SEEEEESSHHHHH---HHHHHHHHHT-EEEEEEEEEEEE-TTEEEEEEEETTTTEEEEEECSSSSEEEEE-TTSS--
T ss_pred CCCEEEEcCcCCCCc---HHHHHHHHhCCCccceEEEEEEC-CCeEEEEEECCCCEEEEEEECCCCCEEEEEeCCCcCc
Confidence 999999999998755 99999999999999999999998 9999999999999986666655 999999999987
No 8
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=99.92 E-value=8.5e-24 Score=171.01 Aligned_cols=140 Identities=19% Similarity=0.215 Sum_probs=120.8
Q ss_pred CCCHhhHHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCC--CCCHHHHHHHHHHHHHhcCC
Q psy9408 2 SINPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDT--ILQSLSVAKLLQVIVKKENP 79 (219)
Q Consensus 2 ~iNp~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~--~~d~~~~A~~la~~ik~~~~ 79 (219)
.++|.+.++++.|.+|+ ++|+++++|+.. ++..+++.+||+|++|+++++. .++++.|+++|++++++.+|
T Consensus 12 ~l~~~s~el~~~A~~l~------~~v~~v~~G~~~-~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~a~al~~~i~~~~p 84 (168)
T cd01715 12 ELRELTLEAVTAARKLG------GEVTALVIGSGA-EAVAAALKAYGADKVLVAEDPALAHYLAEPYAPALVALAKKEKP 84 (168)
T ss_pred ChHHHHHHHHHHHHHhC------CCEEEEEECCCh-HHHHHHHHhcCCCEEEEecChhhcccChHHHHHHHHHHHHhcCC
Confidence 36889999999988873 369999999864 4558899999999999999764 68999999999999999999
Q ss_pred CEEEEcccccCCCcCcHHHHHHHHcCCCcccceeEEEEeeCCeEEEEEEcCCeEEE--EEE-cCCEEEEEecCCCCCCC
Q psy9408 80 QLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIVLKKNNKILVTQEIEDGKET--ILL-SLPAIITTDLRMNEPRY 155 (219)
Q Consensus 80 dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~~~~~~~~~R~~~gG~~~--~~~-~~P~vvtv~~~~~~pr~ 155 (219)
++||+|+++. +++++||||++||+|++++|++++. .++++|+.|+|+.. +++ ..|+|+|++++.|+|-.
T Consensus 85 ~~Vl~~~t~~---g~~la~rlAa~L~~~~vtdv~~l~~----~~~~~r~~~gG~~~~~~~~~~~p~v~tv~~g~f~~~~ 156 (168)
T cd01715 85 SHILAGATSF---GKDLAPRVAAKLDVGLISDVTALED----DLTFTRPIYAGNALATVKSPDRPKVATVRPGAFPAAA 156 (168)
T ss_pred CEEEECCCcc---ccchHHHHHHHhCCCceeeEEEEcc----CcEEEccccCceEEEEEEeCCCCeEEEEcCCcccCCC
Confidence 9999999985 5679999999999999999999964 45899999999964 444 34899999999998743
No 9
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional
Probab=99.83 E-value=3.8e-19 Score=158.84 Aligned_cols=180 Identities=15% Similarity=0.129 Sum_probs=133.3
Q ss_pred CCHhhHHHHHHHHHhhhhcCCCcEEEEEEecCcc-hHHHHHHHHh--CCCCEEEEEecCC--CCCHHHHHHHHHHHHHhc
Q psy9408 3 INPFDEIAIESAIRLRESSNKIKEIIAISCGNKK-CKEILQIAMA--MGVDRAILIETDT--ILQSLSVAKLLQVIVKKE 77 (219)
Q Consensus 3 iNp~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~-~~~~lr~~~a--~GaD~v~~v~~~~--~~d~~~~A~~la~~ik~~ 77 (219)
++|...++|..|++|+++ + .+|.++.+|+.. .++...++.. ||+|++|+++++. .|.++.|+++|++++++.
T Consensus 40 l~~~slEll~~Ar~La~~-~--~~v~avv~g~~~~~~~~a~~l~~~~~Gad~V~~~~~~~l~~y~~e~~a~al~~li~~~ 116 (356)
T PLN00022 40 VKPQSLSAVAAAKSLLGE-S--SPISLLLAGSGPSLQQAASHAASSHPSVSEVLVADSDKLTHPLAEPWAKLVVLAQQKG 116 (356)
T ss_pred eCHHHHHHHHHHHHhcCC-C--CceEEEEEcCCcchhhHHHHHhhccCCCCEEEEecCchhcccChHHHHHHHHHHHHhc
Confidence 688999999999999864 2 479999999653 2455666665 6999999998764 688999999999999999
Q ss_pred CCCEEEEcccccCCCcCcHHHHHHHHcCCCcccceeEEEEeeCCeEEEEEEcCCeEE--EEEEc--CCEEEEEecCCCCC
Q psy9408 78 NPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIVLKKNNKILVTQEIEDGKE--TILLS--LPAIITTDLRMNEP 153 (219)
Q Consensus 78 ~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~~~~~~~~~R~~~gG~~--~~~~~--~P~vvtv~~~~~~p 153 (219)
+|++||+|+|..+ ++++||||.+|++++++||++++ + ++ .++|+.|+|+. ++.++ .|+|+|++++.|+|
T Consensus 117 ~P~~vL~~~T~~G---rdlApRlAarL~~gl~aD~~~l~-~-~~--~~~rp~~gG~~~a~i~~~~~~p~~~Tvrpg~f~~ 189 (356)
T PLN00022 117 GYSHILAASTSFG---KNVLPRAAALLDVSPITDVVRIL-D-SN--TFVRPIYAGNALATVRYKGSGPCMLSIRPTSFPV 189 (356)
T ss_pred CCCEEEECCCCch---hHHHHHHHHHhCCCeecCEEEEc-C-CC--eEEEEecCCcEEEEEEeCCCCcEEEEECCCcccc
Confidence 9999999999965 56999999999999999999996 3 44 48999999996 44443 48999999999975
Q ss_pred CCCCHHHHHHHccCcceEeeccccCCcCCCCeEEEEEeecc
Q psy9408 154 RYVTLMNIIKARKKNINIFKIDELNVNINTGLNIIKVKESH 194 (219)
Q Consensus 154 r~p~l~~~~~A~~~~i~~~~~~~l~~~~~~~~~v~~~~~p~ 194 (219)
..+.- --.....+++..+...+..+....+++.+..++.
T Consensus 190 ~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (356)
T PLN00022 190 TPALA--NSESNEAPISQVDLSLLDEDSVGKSRWVGLSVQD 228 (356)
T ss_pred ccccc--cccCCCcceEEeccccccccccCceEEEEEEccc
Confidence 43220 0002233455544432222222345556555443
No 10
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional
Probab=99.82 E-value=1.2e-18 Score=153.51 Aligned_cols=136 Identities=14% Similarity=0.101 Sum_probs=113.7
Q ss_pred HHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCC-CCCHHHHHHHHHHHHHhcCC-CEEEEc
Q psy9408 8 EIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDT-ILQSLSVAKLLQVIVKKENP-QLVILG 85 (219)
Q Consensus 8 ~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~-~~d~~~~A~~la~~ik~~~~-dlVl~G 85 (219)
.++|..|++|+ .++.++.+|... ..++..||+|++|+++++. .|+++.|+++|++++++.+| ++||+|
T Consensus 18 ~Ell~~a~~l~------~~v~av~~g~~~----~~~~~~~Gad~V~~~~~~~~~~~~e~~~~al~~~i~~~~p~~~vl~~ 87 (313)
T PRK03363 18 PELMNGAQALA------NQINAFVLNDAD----GAQAIQLGANHVWKLSGKPDDRMIEDYAGVMADTIRQHGADGLVLLP 87 (313)
T ss_pred HHHHHHHHHhc------CceEEEEECcch----HHHHHhcCCCEEEEecCcccccChHHHHHHHHHHHHhhCCCcEEEEc
Confidence 36777777763 368899999532 2456789999999998753 58999999999999999999 899999
Q ss_pred ccccCCCcCcHHHHHHHHcCCCcccceeEEEEeeCCeEEEEEEcCCeEE--EEEEcC-CEEEEEecCCCCCCCCC
Q psy9408 86 KQSIDSDNNQTGQMLAALLNWPQATFASKIVLKKNNKILVTQEIEDGKE--TILLSL-PAIITTDLRMNEPRYVT 157 (219)
Q Consensus 86 ~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~~~~~~~~~R~~~gG~~--~~~~~~-P~vvtv~~~~~~pr~p~ 157 (219)
+|..+ ++++|+||.+|++++++||++++++ ++.+.++|+.|+|+. +.+++. |+|+|++++.|+|..|.
T Consensus 88 ~T~~G---r~laprlAa~l~~gl~~D~~~l~~~-~~~l~~~rp~~gG~~~a~~~~~~~~~v~tvrpg~f~~~~~~ 158 (313)
T PRK03363 88 NTRRG---KLLAAKLGYRLKAAVSNDASTVSVQ-DGKATVKHMVYGGLAIGEERIATPYAVLTISSGTFDAAQPD 158 (313)
T ss_pred CCccH---HHHHHHHHHHhCCCcccceEEEEec-CCCcEEEEeccCCcEEEEEEECCCCeEEEECCCCccCCccC
Confidence 99955 5699999999999999999999998 777889999999996 445544 79999999999876444
No 11
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=99.81 E-value=1.5e-18 Score=152.66 Aligned_cols=135 Identities=17% Similarity=0.211 Sum_probs=112.7
Q ss_pred HHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecC-CCCCHHHHHHHHHHHHHhcCCCEEEEccc
Q psy9408 9 IAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETD-TILQSLSVAKLLQVIVKKENPQLVILGKQ 87 (219)
Q Consensus 9 ~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~-~~~d~~~~A~~la~~ik~~~~dlVl~G~~ 87 (219)
++|..|.++ + .+|.++.+|.. ...++..+|+|++|+++++ ..++++.|+++|++++++.+|++||+|.|
T Consensus 19 Ell~~A~~l----~--~~v~~vv~g~~----~~~~l~~~Gad~V~~~~~~~~~~~~e~~~~al~~~i~~~~P~~vL~~~T 88 (312)
T PRK11916 19 ELFGGAQQW----G--QQVYAIVQNTD----QAQAVMPYGPKCIYVLEQNDALQRTENYAESIAALLKDKHPAMLLLAAT 88 (312)
T ss_pred HHHHHHHHc----C--CcEEEEEEChh----HHHHHHhcCCCEEEEeCCcccccChHHHHHHHHHHHHhcCCCEEEECCC
Confidence 455555444 3 47999999953 2455678999999999876 46789999999999999999999999999
Q ss_pred ccCCCcCcHHHHHHHHcCCCcccceeEEEEeeCCeEEEEEEcCCeEE--EEEEc-CCEEEEEecCCCCCCCCC
Q psy9408 88 SIDSDNNQTGQMLAALLNWPQATFASKIVLKKNNKILVTQEIEDGKE--TILLS-LPAIITTDLRMNEPRYVT 157 (219)
Q Consensus 88 s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~~~~~~~~~R~~~gG~~--~~~~~-~P~vvtv~~~~~~pr~p~ 157 (219)
..+ ++++|+||.+|+.++++||++++++ ++.+.++|+.|+|+. ++..+ .|+|+|++++.|+|..++
T Consensus 89 ~~G---rdla~rlAarL~~gl~~d~~~l~~~-~~~~~~~rp~~gG~~~a~i~~~~~p~v~tvrpg~f~~~~~~ 157 (312)
T PRK11916 89 KRG---KALAARLSVQLNAALVNDATAVDIV-DGHICAEHRMYGGLAFAQEKINSPLAIITLAPGVQEPCTSD 157 (312)
T ss_pred cch---HHHHHHHHHHhCCCcccceEEEEec-CCCeEEEEEcCCCcEEEEEEECCCCeEEEECCCCcCCCcCC
Confidence 965 5699999999999999999999998 888889999999995 44444 489999999999876544
No 12
>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=99.80 E-value=4.3e-18 Score=149.18 Aligned_cols=139 Identities=20% Similarity=0.251 Sum_probs=121.3
Q ss_pred CCHhhHHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCC--CCCHHHHHHHHHHHHHhcCCC
Q psy9408 3 INPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDT--ILQSLSVAKLLQVIVKKENPQ 80 (219)
Q Consensus 3 iNp~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~--~~d~~~~A~~la~~ik~~~~d 80 (219)
++|...++++.|.++. +|.++++|. ....++..+|+|+++.++++. .|.++.|+++|.+++++++|+
T Consensus 14 l~~~s~el~~~A~~l~-------~v~~vv~g~----~~~~~~~~~Gad~v~~~~~~~~~~~~~e~~~~~l~~l~~~~~p~ 82 (313)
T COG2025 14 LSPVSLELLTAARKLG-------DVAAVVIGE----GAAAAAKAYGADKVLVAEGPELANYLPEPYADALVDLAKKYKPD 82 (313)
T ss_pred cchhhHHHHHHHHhcC-------ceEEEEech----HHHHHHhhcCCCEEEEEcccchhccchhHHHHHHHHHHHhcCCC
Confidence 6788889998876662 799999997 456778899999999999765 688999999999999999999
Q ss_pred EEEEcccccCCCcCcHHHHHHHHcCCCcccceeEEEEeeCCeEEEEEEcCCeEE--EEEE--cCCEEEEEecCCCCCCCC
Q psy9408 81 LVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIVLKKNNKILVTQEIEDGKE--TILL--SLPAIITTDLRMNEPRYV 156 (219)
Q Consensus 81 lVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~~~~~~~~~R~~~gG~~--~~~~--~~P~vvtv~~~~~~pr~p 156 (219)
+||+|+|+.| ++++|++|.+|+.++++||++++++ ++ ++++|++|+|+. ++.. +.|.|+|++++.|++..+
T Consensus 83 ~il~~aT~~G---k~la~rvAa~l~~~~~~D~~~l~~~-~~-l~~~Rp~ygG~~i~~~~~~~~~~~v~Tvr~g~~~~~~~ 157 (313)
T COG2025 83 VVLLPATTNG---KELAPRVAARLDVGLIADVTSLDVG-DG-LTFTRPIYGGNAIATVISPSGRPAVITVRPGVFAAAAA 157 (313)
T ss_pred EEEEcCCCch---HHHHHHHHHHcCCCceEEEEEEEcC-Cc-cEEEeeccccceeEEEecCCCCceEEEEcccccCCCCC
Confidence 9999999965 5699999999999999999999998 67 999999999996 4443 348999999999987544
Q ss_pred C
Q psy9408 157 T 157 (219)
Q Consensus 157 ~ 157 (219)
.
T Consensus 158 ~ 158 (313)
T COG2025 158 A 158 (313)
T ss_pred C
Confidence 4
No 13
>KOG3954|consensus
Probab=99.29 E-value=1.2e-10 Score=99.20 Aligned_cols=140 Identities=19% Similarity=0.207 Sum_probs=116.1
Q ss_pred CCCHhhHHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHH-HHhCC-CCEEEEEecCC--CCCHHHHHHHHHHHHHhc
Q psy9408 2 SINPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQI-AMAMG-VDRAILIETDT--ILQSLSVAKLLQVIVKKE 77 (219)
Q Consensus 2 ~iNp~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~-~~a~G-aD~v~~v~~~~--~~d~~~~A~~la~~ik~~ 77 (219)
.++|.-.+++++|.+| | ++|+++..|.. +++.... +-.+| ..++++.+++. +.-|+.++..|-+..|+.
T Consensus 33 ~l~p~tls~i~AA~kl----g--~~vs~lv~Gs~-~~k~ae~~ak~~~~v~kvlvae~~k~~~~lpe~lapl~~~~~kq~ 105 (336)
T KOG3954|consen 33 SLSPITLSTITAAKKL----G--GDVSVLVAGSK-ASKAAEALAKVVGDVKKVLVAEDDKLEGNLPEQLAPLLLANQKQF 105 (336)
T ss_pred cccchhhHHHHHHHHc----C--CceEEEEecCc-chHHHHHHHhhccchheEEEeecchhcccchHHhHHHHHHHHhcC
Confidence 3789999999998877 3 69999999976 4444433 34467 89999999875 567999999999999999
Q ss_pred CCCEEEEcccccCCCcCcHHHHHHHHcCCCcccceeEEEEeeCCeEEEEEEcCCeEE--EEEEcC-CEEEEEecCCCCCC
Q psy9408 78 NPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIVLKKNNKILVTQEIEDGKE--TILLSL-PAIITTDLRMNEPR 154 (219)
Q Consensus 78 ~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~~~~~~~~~R~~~gG~~--~~~~~~-P~vvtv~~~~~~pr 154 (219)
+|.-|+.|+++.+++ |-||+|++|+.-.+++++.+.-. + ++.|++|.|+. +++.+- ++++|++.-.|+|-
T Consensus 106 ~yshi~a~~SafGK~---vlPRvaA~lDV~pIsdvi~i~s~--d--tFvRpiYAGNa~~tv~~~~~~k~ltvR~tsF~~a 178 (336)
T KOG3954|consen 106 DYSHILAGSSAFGKN---VLPRVAAKLDVSPISDVIGIKSA--D--TFVRPIYAGNAICTVKCKAPIKLLTVRATSFPPA 178 (336)
T ss_pred CeeEEEecccccccc---chhhHHhhhcccchhheeEeccC--c--ceeeeeeccceEEEEEcCCCceEEEEecccCCCc
Confidence 999999999997755 99999999999999999999643 2 57899999996 555554 59999999999875
Q ss_pred C
Q psy9408 155 Y 155 (219)
Q Consensus 155 ~ 155 (219)
.
T Consensus 179 ~ 179 (336)
T KOG3954|consen 179 A 179 (336)
T ss_pred c
Confidence 3
No 14
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=96.57 E-value=0.09 Score=38.35 Aligned_cols=98 Identities=13% Similarity=0.162 Sum_probs=67.7
Q ss_pred CHhhHHHHHHHHHhhhhcCCCcEEEEEEecCcc--------------hHHHHHHHHh----CCCCEEEEEecCCCCCHHH
Q psy9408 4 NPFDEIAIESAIRLRESSNKIKEIIAISCGNKK--------------CKEILQIAMA----MGVDRAILIETDTILQSLS 65 (219)
Q Consensus 4 Np~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~--------------~~~~lr~~~a----~GaD~v~~v~~~~~~d~~~ 65 (219)
+++...+++.|.+++... +.+++++.+-+.. .++.++.... .|+.-.+.+... ++
T Consensus 9 ~~~~~~~l~~a~~~a~~~--~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~-- 81 (130)
T cd00293 9 SEESERALRWAARLARRL--GAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGVKVETVVLEG---DP-- 81 (130)
T ss_pred CHHHHHHHHHHHHHHHhc--CCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecC---CC--
Confidence 577889999999999986 4789988876531 2334444443 466544444321 22
Q ss_pred HHHHHHHHHHhcCCCEEEEcccccCC----CcCcHHHHHHHHcCCCcc
Q psy9408 66 VAKLLQVIVKKENPQLVILGKQSIDS----DNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 66 ~A~~la~~ik~~~~dlVl~G~~s~d~----~~~~v~~~lA~~Lg~p~v 109 (219)
++.|.+.+++.++|+|++|....+. -.+.++-.+...+++|++
T Consensus 82 -~~~i~~~~~~~~~dlvvig~~~~~~~~~~~~~~~~~~ll~~~~~pvl 128 (130)
T cd00293 82 -AEAILEAAEELGADLIVMGSRGRSGLRRLLLGSVAERVLRHAPCPVL 128 (130)
T ss_pred -HHHHHHHHHHcCCCEEEEcCCCCCccceeeeccHHHHHHhCCCCCEE
Confidence 6899999999999999999876544 245667777777777754
No 15
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=95.85 E-value=0.28 Score=36.47 Aligned_cols=99 Identities=19% Similarity=0.170 Sum_probs=62.2
Q ss_pred CHhhHHHHHHHHHhhhhcCCCcEEEEEEecCc--c------------hHHHHHH----HHhCCCCEEEEEecCCCCCHHH
Q psy9408 4 NPFDEIAIESAIRLRESSNKIKEIIAISCGNK--K------------CKEILQI----AMAMGVDRAILIETDTILQSLS 65 (219)
Q Consensus 4 Np~D~~Ale~A~~l~e~~g~g~~V~av~~G~~--~------------~~~~lr~----~~a~GaD~v~~v~~~~~~d~~~ 65 (219)
+++...+|+.|.+|+... +.+++++.+=+. . .++.++. +..+|.+--..+... .+
T Consensus 9 s~~~~~~l~~a~~la~~~--~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~--- 81 (132)
T cd01988 9 PNTARDLLELAAALARAQ--NGEIIPLNVIEVPNHSSPSQLEVNVQRARKLLRQAERIAASLGVPVHTIIRID--HD--- 81 (132)
T ss_pred chhHHHHHHHHHHHhhcC--CCeEEEEEEEecCCCCCcchhHHHHHHHHHHHHHHHHHhhhcCCceEEEEEec--CC---
Confidence 578889999999999875 468877776321 0 1122222 234565532222211 12
Q ss_pred HHHHHHHHHHhcCCCEEEEcccccCCC----cCcHHHHHHHHcCCCcc
Q psy9408 66 VAKLLQVIVKKENPQLVILGKQSIDSD----NNQTGQMLAALLNWPQA 109 (219)
Q Consensus 66 ~A~~la~~ik~~~~dlVl~G~~s~d~~----~~~v~~~lA~~Lg~p~v 109 (219)
.++.|.+++++.+.|+|++|.....+. -|.++-.+..+..+|++
T Consensus 82 ~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~lGs~~~~v~~~~~~pvl 129 (132)
T cd01988 82 IASGILRTAKERQADLIIMGWHGSTSLRDRLFGGVIDQVLESAPCDVA 129 (132)
T ss_pred HHHHHHHHHHhcCCCEEEEecCCCCCccceecCchHHHHHhcCCCCEE
Confidence 447788888889999999999876542 24456666666666654
No 16
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=95.83 E-value=0.077 Score=39.51 Aligned_cols=95 Identities=17% Similarity=0.173 Sum_probs=63.4
Q ss_pred CHhhHHHHHHHHHhhhhcCCCcEEEEEEecCcch-------HHHH----HHHHhCCCCEEEEEecCCCCCHHHHHHHHHH
Q psy9408 4 NPFDEIAIESAIRLRESSNKIKEIIAISCGNKKC-------KEIL----QIAMAMGVDRAILIETDTILQSLSVAKLLQV 72 (219)
Q Consensus 4 Np~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~-------~~~l----r~~~a~GaD~v~~v~~~~~~d~~~~A~~la~ 72 (219)
++...++|+.|.+++..+ +.+++.+.+-+... ++.+ +.+-..|.+.. ++.. .+ .++.|.+
T Consensus 9 s~~s~~al~~a~~la~~~--~~~l~ll~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~---~~---~~~~I~~ 79 (124)
T cd01987 9 GPNAERLIRRAARLADRL--KAPWYVVYVETPRLNRLSEAERRRLAEALRLAEELGAEVV-TLPG---DD---VAEAIVE 79 (124)
T ss_pred CcchHHHHHHHHHHHHHh--CCCEEEEEEecCccccCCHHHHHHHHHHHHHHHHcCCEEE-EEeC---Cc---HHHHHHH
Confidence 577899999999999986 46888888876542 2222 22334555432 2221 12 3688999
Q ss_pred HHHhcCCCEEEEcccccCCCc----CcHHHHHHHHc-CCC
Q psy9408 73 IVKKENPQLVILGKQSIDSDN----NQTGQMLAALL-NWP 107 (219)
Q Consensus 73 ~ik~~~~dlVl~G~~s~d~~~----~~v~~~lA~~L-g~p 107 (219)
++++.++|+|++|....+.-. |.++-++..+. .+|
T Consensus 80 ~~~~~~~dllviG~~~~~~~~~~~~Gs~~~~v~~~a~~~~ 119 (124)
T cd01987 80 FAREHNVTQIVVGKSRRSRWRELFRGSLVDRLLRRAGNID 119 (124)
T ss_pred HHHHcCCCEEEeCCCCCchHHHHhcccHHHHHHHhCCCCe
Confidence 999999999999999754322 45666666665 444
No 17
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=94.57 E-value=0.72 Score=35.18 Aligned_cols=95 Identities=15% Similarity=0.083 Sum_probs=57.9
Q ss_pred CHhhHHHHHHHHHhhhhcCCCcEEEEEEecCc-----------------------chHHHHHHHH----hCCCCEEEEEe
Q psy9408 4 NPFDEIAIESAIRLRESSNKIKEIIAISCGNK-----------------------KCKEILQIAM----AMGVDRAILIE 56 (219)
Q Consensus 4 Np~D~~Ale~A~~l~e~~g~g~~V~av~~G~~-----------------------~~~~~lr~~~----a~GaD~v~~v~ 56 (219)
++....||++|.+++... +.+++.+.+-+. ..++.++++. ..|..--..+.
T Consensus 9 S~~s~~al~~a~~~a~~~--~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 86 (146)
T cd01989 9 DKKSKNALKWALDNLATK--GQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPYRCFCSRKGVQCEDVVL 86 (146)
T ss_pred ccccHHHHHHHHHhccCC--CCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEEE
Confidence 567789999999999875 468877766332 1122233322 34443322222
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCC-----cCcHHHHHHHHcC
Q psy9408 57 TDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSD-----NNQTGQMLAALLN 105 (219)
Q Consensus 57 ~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~-----~~~v~~~lA~~Lg 105 (219)
. +-+ .++.|.+.+++.++|+|++|....++- ++.++-++...-.
T Consensus 87 ~--g~~---~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~~gssva~~Vi~~a~ 135 (146)
T cd01989 87 E--DDD---VAKAIVEYVADHGITKLVMGASSDNHFSMKFKKSDVASSVLKEAP 135 (146)
T ss_pred e--CCc---HHHHHHHHHHHcCCCEEEEeccCCCceeecccCCchhHHHHhcCC
Confidence 1 112 357788889999999999999876542 1235555555555
No 18
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=93.69 E-value=2 Score=31.30 Aligned_cols=98 Identities=18% Similarity=0.147 Sum_probs=63.8
Q ss_pred CHhhHHHHHHHHHhhhhcCCCcEEEEEEecCcchHH---------------HHH--------HHHhCCCCE-EEEEecCC
Q psy9408 4 NPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKE---------------ILQ--------IAMAMGVDR-AILIETDT 59 (219)
Q Consensus 4 Np~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~---------------~lr--------~~~a~GaD~-v~~v~~~~ 59 (219)
.+....+++.|.+++... +.+|+++.+=+..... ... .....+... ...+...
T Consensus 12 ~~~~~~al~~a~~la~~~--~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 88 (140)
T PF00582_consen 12 SEESRRALRFALELAKRS--GAEITLLHVIPPPPQYSFSAAEDEESEEEAEEEEQARQAEAEEAEAEGGIVIEVVIESG- 88 (140)
T ss_dssp SHHHHHHHHHHHHHHHHH--TCEEEEEEEEESCHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEES-
T ss_pred CHHHHHHHHHHHHHHHhh--CCeEEEEEeeccccccccccccccccccccchhhhhhhHHHHHHhhhccceeEEEEEee-
Confidence 467789999999999986 4788888776531000 000 011223333 3333322
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCc----CcHHHHHHHHcCCCcc
Q psy9408 60 ILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDN----NQTGQMLAALLNWPQA 109 (219)
Q Consensus 60 ~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~----~~v~~~lA~~Lg~p~v 109 (219)
..++.|.+.+++.++|+|++|.....+-. +.++-.+.....+|++
T Consensus 89 -----~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~~~~~~pVl 137 (140)
T PF00582_consen 89 -----DVADAIIEFAEEHNADLIVMGSRGRSGLERLLFGSVAEKLLRHAPCPVL 137 (140)
T ss_dssp -----SHHHHHHHHHHHTTCSEEEEESSSTTSTTTSSSHHHHHHHHHHTSSEEE
T ss_pred -----ccchhhhhccccccceeEEEeccCCCCccCCCcCCHHHHHHHcCCCCEE
Confidence 25588999999999999999999854433 3577777777777754
No 19
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=92.66 E-value=2.5 Score=32.15 Aligned_cols=77 Identities=17% Similarity=0.216 Sum_probs=48.4
Q ss_pred CHhhHHHHHHHHHhhhhcCCCcEEEEEEecCcc----------------------hHHHHHHH-HhCCCCE-EEEEecCC
Q psy9408 4 NPFDEIAIESAIRLRESSNKIKEIIAISCGNKK----------------------CKEILQIA-MAMGVDR-AILIETDT 59 (219)
Q Consensus 4 Np~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~----------------------~~~~lr~~-~a~GaD~-v~~v~~~~ 59 (219)
++....||+.|..|+... +.+++.+.+-++. ..+.+++. ...|.+. ..++..+
T Consensus 13 S~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G- 89 (144)
T PRK15118 13 SPESKVLVEKAVSMARPY--NAKVSLIHVDVNYSDLYTGLIDVNLGDMQKRISEETHHALTELSTNAGYPITETLSGSG- 89 (144)
T ss_pred ChhHHHHHHHHHHHHHhh--CCEEEEEEEccChhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEEec-
Confidence 467789999999999876 4688888763110 00112222 2345542 2333311
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEcccc
Q psy9408 60 ILQSLSVAKLLQVIVKKENPQLVILGKQS 88 (219)
Q Consensus 60 ~~d~~~~A~~la~~ik~~~~dlVl~G~~s 88 (219)
++ +..|.+.+++.++|+|++|...
T Consensus 90 --~p---~~~I~~~a~~~~~DLIV~Gs~~ 113 (144)
T PRK15118 90 --DL---GQVLVDAIKKYDMDLVVCGHHQ 113 (144)
T ss_pred --CH---HHHHHHHHHHhCCCEEEEeCcc
Confidence 22 3677788899999999999984
No 20
>PRK10116 universal stress protein UspC; Provisional
Probab=92.39 E-value=3 Score=31.51 Aligned_cols=98 Identities=12% Similarity=0.080 Sum_probs=57.2
Q ss_pred CHhhHHHHHHHHHhhhhcCCCcEEEEEEecCc-------------ch--------HHHHHH-HHhCCCCE-EEEEecCCC
Q psy9408 4 NPFDEIAIESAIRLRESSNKIKEIIAISCGNK-------------KC--------KEILQI-AMAMGVDR-AILIETDTI 60 (219)
Q Consensus 4 Np~D~~Ale~A~~l~e~~g~g~~V~av~~G~~-------------~~--------~~~lr~-~~a~GaD~-v~~v~~~~~ 60 (219)
++....+|+.|.+|++++ +.+++.+.+=+. .. ++.+++ ....|... ..++..
T Consensus 13 s~~s~~al~~A~~lA~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--- 87 (142)
T PRK10116 13 TPESQQLLAKAVSIARPV--NGKISLITLASDPEMYNQFAAPMLEDLRSVMQEETQSFLDKLIQDADYPIEKTFIAY--- 87 (142)
T ss_pred CcchHHHHHHHHHHHHHh--CCEEEEEEEccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEec---
Confidence 345678999999999886 468877754211 00 112222 22345432 233331
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcC--cHHHHHHHHcCCCcc
Q psy9408 61 LQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNN--QTGQMLAALLNWPQA 109 (219)
Q Consensus 61 ~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~--~v~~~lA~~Lg~p~v 109 (219)
-++. ..|.+.+++.++|+|++|....++-.+ .++..+....++|++
T Consensus 88 G~~~---~~I~~~a~~~~~DLiV~g~~~~~~~~~~~s~a~~v~~~~~~pVL 135 (142)
T PRK10116 88 GELS---EHILEVCRKHHFDLVICGNHNHSFFSRASCSAKRVIASSEVDVL 135 (142)
T ss_pred CCHH---HHHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHHhcCCCCEE
Confidence 2332 677788999999999999886433211 244566666666643
No 21
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=92.04 E-value=0.68 Score=41.69 Aligned_cols=79 Identities=20% Similarity=0.160 Sum_probs=53.8
Q ss_pred EecCcchHHHHHHHHhCCCCEEE-EEecCC--CCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHH----HHHH
Q psy9408 31 SCGNKKCKEILQIAMAMGVDRAI-LIETDT--ILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQM----LAAL 103 (219)
Q Consensus 31 ~~G~~~~~~~lr~~~a~GaD~v~-~v~~~~--~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~----lA~~ 103 (219)
.+||. ..+..++.-++.=+- +++.|. .-+.+...+-+.+.+++.+||+++||-...-+.-+...+. +.+.
T Consensus 33 ~vGp~---~~l~~~l~~~~eIv~TiiCGDnyf~en~eea~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~ 109 (349)
T PF07355_consen 33 PVGPG---LMLEKALKDDAEIVATIICGDNYFNENKEEALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEK 109 (349)
T ss_pred CCChH---HHHHHHhcCCCEEEEEEEECcchhhhCHHHHHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHh
Confidence 45653 346666654333322 345454 3378888889999999999999999998876654554444 5558
Q ss_pred cCCCcccce
Q psy9408 104 LNWPQATFA 112 (219)
Q Consensus 104 Lg~p~vt~v 112 (219)
|++|.+|..
T Consensus 110 ~~IP~vtaM 118 (349)
T PF07355_consen 110 LGIPVVTAM 118 (349)
T ss_pred hCCCEEEEe
Confidence 999998654
No 22
>PRK15456 universal stress protein UspG; Provisional
Probab=91.74 E-value=4.6 Score=30.66 Aligned_cols=96 Identities=11% Similarity=0.091 Sum_probs=56.1
Q ss_pred HhhHHHHHHHHHhhhhcCCCcEEEEEEecCcc----------------------hHHHHHHHHh-CC---CCEEEEEecC
Q psy9408 5 PFDEIAIESAIRLRESSNKIKEIIAISCGNKK----------------------CKEILQIAMA-MG---VDRAILIETD 58 (219)
Q Consensus 5 p~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~----------------------~~~~lr~~~a-~G---aD~v~~v~~~ 58 (219)
+....|+++|.++++.. .++..+.+=+.. +++.+.++.. .+ .+--.++..
T Consensus 15 ~~s~~al~~A~~la~~~---~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~v~~- 90 (142)
T PRK15456 15 ELSDKAVRHAEFLAQDD---GVIHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAEERLQTMVSHFTIDPSRIKQHVRF- 90 (142)
T ss_pred hHHHHHHHHHHHHHhcC---CeEEEEEEecCcccccccccccchhhHHHHHHHHHHHHHHHHHHHhCCCCcceEEEEcC-
Confidence 46789999999999763 377666543310 1111222222 22 221122221
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCC---cCcHHHHHHHHcCCCcc
Q psy9408 59 TILQSLSVAKLLQVIVKKENPQLVILGKQSIDSD---NNQTGQMLAALLNWPQA 109 (219)
Q Consensus 59 ~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~---~~~v~~~lA~~Lg~p~v 109 (219)
+ ++ +..|.+++++.++|+|++|....+.. -|.++-++..+..+|++
T Consensus 91 -G-~~---~~~I~~~a~~~~~DLIVmG~~g~~~~~~llGS~a~~v~~~a~~pVL 139 (142)
T PRK15456 91 -G-SV---RDEVNELAEELGADVVVIGSRNPSISTHLLGSNASSVIRHANLPVL 139 (142)
T ss_pred -C-Ch---HHHHHHHHhhcCCCEEEEcCCCCCccceecCccHHHHHHcCCCCEE
Confidence 1 22 36677888899999999999864321 15567777777777754
No 23
>PRK15005 universal stress protein F; Provisional
Probab=91.44 E-value=4.9 Score=30.34 Aligned_cols=43 Identities=9% Similarity=0.097 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCCEEEEcccccCCC---cCcHHHHHHHHcCCCcc
Q psy9408 67 AKLLQVIVKKENPQLVILGKQSIDSD---NNQTGQMLAALLNWPQA 109 (219)
Q Consensus 67 A~~la~~ik~~~~dlVl~G~~s~d~~---~~~v~~~lA~~Lg~p~v 109 (219)
+..|.+.+++.++|+|++|....+.. -|.++-.+..+..+|++
T Consensus 96 ~~~I~~~a~~~~~DLIV~Gs~~~~~~~~llGS~a~~vl~~a~cpVl 141 (144)
T PRK15005 96 KDRILELAKKIPADMIIIASHRPDITTYLLGSNAAAVVRHAECSVL 141 (144)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCchheeecchHHHHHHhCCCCEE
Confidence 37788888899999999997632211 14567777777777754
No 24
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=91.29 E-value=2.1 Score=38.87 Aligned_cols=96 Identities=14% Similarity=0.197 Sum_probs=57.6
Q ss_pred CCHhhHHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCC----------CCCHHHHHHHHHH
Q psy9408 3 INPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDT----------ILQSLSVAKLLQV 72 (219)
Q Consensus 3 iNp~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~----------~~d~~~~A~~la~ 72 (219)
+||.+ +.+..++++++.|-..+|.+|. |. +..+.+++.+..|.. .-.++... ..+.+.=+..|.+
T Consensus 81 ~np~~--~a~~v~eia~e~Gl~lkvA~V~-gD-d~~~~v~~~~~~g~~-~~~l~~~~~l~~~~~~~~~a~aylGa~pI~~ 155 (362)
T PF07287_consen 81 LNPAG--CADIVREIARELGLSLKVAVVY-GD-DLKDEVKELLAEGET-IRPLDTGPPLSEWDDRIVSANAYLGAEPIVE 155 (362)
T ss_pred CCHHH--HHHHHHHHHHhcCCCeeEEEEE-Cc-cchHhHHHHHhCCCC-CccCCCCCCcchhccccceEEEecChHHHHH
Confidence 57877 7778888888876444555444 44 456777777775532 11111111 0111111344555
Q ss_pred HHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCC
Q psy9408 73 IVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWP 107 (219)
Q Consensus 73 ~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p 107 (219)
+++ .++|+|+||+.+ |...+.+-++.++||.
T Consensus 156 AL~-~GADIVI~GR~~---D~Al~~a~~~~~~GW~ 186 (362)
T PF07287_consen 156 ALE-AGADIVITGRVA---DPALFAAPAIHEFGWS 186 (362)
T ss_pred HHH-cCCCEEEeCccc---chHHHHhHHHHHcCCC
Confidence 554 479999999988 6677777777777775
No 25
>PRK10481 hypothetical protein; Provisional
Probab=91.18 E-value=1.7 Score=36.88 Aligned_cols=86 Identities=8% Similarity=-0.031 Sum_probs=62.3
Q ss_pred CcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHH
Q psy9408 24 IKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAAL 103 (219)
Q Consensus 24 g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~ 103 (219)
+.++.+++--++......++-..+|.+-.+....+-. .+.......++.++..++|+|+++++... .+....+...
T Consensus 129 g~riGVitP~~~qi~~~~~kw~~~G~~v~~~~aspy~-~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~---~~~~~~le~~ 204 (224)
T PRK10481 129 GHQVGVIVPVEEQLAQQAQKWQVLQKPPVFALASPYH-GSEEELIDAGKELLDQGADVIVLDCLGYH---QRHRDLLQKA 204 (224)
T ss_pred CCeEEEEEeCHHHHHHHHHHHHhcCCceeEeecCCCC-CCHHHHHHHHHHhhcCCCCEEEEeCCCcC---HHHHHHHHHH
Confidence 4688888988887778888888999987766553322 33323333444455678999999998642 3789999999
Q ss_pred cCCCccccee
Q psy9408 104 LNWPQATFAS 113 (219)
Q Consensus 104 Lg~p~vt~v~ 113 (219)
||.|.+...+
T Consensus 205 lg~PVI~~n~ 214 (224)
T PRK10481 205 LDVPVLLSNV 214 (224)
T ss_pred HCcCEEcHHH
Confidence 9999987543
No 26
>PRK11175 universal stress protein UspE; Provisional
Probab=90.84 E-value=2.8 Score=36.17 Aligned_cols=97 Identities=20% Similarity=0.219 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHhhhhcCCCcEEEEEEecCc---------------c--------hHHHHHHHH-hCCCCEE-EEEecCCC
Q psy9408 6 FDEIAIESAIRLRESSNKIKEIIAISCGNK---------------K--------CKEILQIAM-AMGVDRA-ILIETDTI 60 (219)
Q Consensus 6 ~D~~Ale~A~~l~e~~g~g~~V~av~~G~~---------------~--------~~~~lr~~~-a~GaD~v-~~v~~~~~ 60 (219)
++..+|+.|.++++... +.+++.+.+-+. . ..+.+++.. .+|.+.. +++..+
T Consensus 171 ~~~~al~~a~~la~~~~-~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~G-- 247 (305)
T PRK11175 171 LNEKLVEEAIDLAEQLN-HAEVHLVNAYPVTPINIAIELPEFDPSVYNDAIRGQHLLAMKALRQKFGIDEEQTHVEEG-- 247 (305)
T ss_pred HHHHHHHHHHHHHhhCc-CCceEEEEEecCcchhccccccccchhhHHHHHHHHHHHHHHHHHHHhCCChhheeeccC--
Confidence 45789999999998751 357777765210 0 112233322 3565431 222211
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcccccCCC----cCcHHHHHHHHcCCCcc
Q psy9408 61 LQSLSVAKLLQVIVKKENPQLVILGKQSIDSD----NNQTGQMLAALLNWPQA 109 (219)
Q Consensus 61 ~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~----~~~v~~~lA~~Lg~p~v 109 (219)
++ +..|.+.+++.++|+|++|.....+- -|.++-++..+..+|++
T Consensus 248 -~~---~~~I~~~a~~~~~DLIVmG~~~~~~~~~~llGS~a~~v~~~~~~pVL 296 (305)
T PRK11175 248 -LP---EEVIPDLAEHLDAELVILGTVGRTGLSAAFLGNTAEHVIDHLNCDLL 296 (305)
T ss_pred -CH---HHHHHHHHHHhCCCEEEECCCccCCCcceeecchHHHHHhcCCCCEE
Confidence 22 36788889999999999999865432 24577778888887755
No 27
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=90.74 E-value=1.1 Score=41.43 Aligned_cols=78 Identities=13% Similarity=0.085 Sum_probs=54.1
Q ss_pred ecCcchHHHHHHHHhCCCCEEE-EEecCC--CCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHH----HHc
Q psy9408 32 CGNKKCKEILQIAMAMGVDRAI-LIETDT--ILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLA----ALL 104 (219)
Q Consensus 32 ~G~~~~~~~lr~~~a~GaD~v~-~v~~~~--~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA----~~L 104 (219)
+||. -.+..++...+.=+- +++.|. .-+.+...+-|.+.+++.+||+++||-...-+.-+...+.+| +.|
T Consensus 30 vGp~---~~l~~~l~~~~eVvaTiiCGDnYf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~ 106 (431)
T TIGR01918 30 PPIS---QMLNKLLEEDAEVVHTVVCGDSFFGENLEEAVARVLEMLKDKEPDIFIAGPAFNAGRYGVACGEICKVVQDKL 106 (431)
T ss_pred CChH---HHHHHHhccCCEEEEEEEECchhhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhh
Confidence 5653 346666653343332 345454 236788888999999999999999999887776566555554 569
Q ss_pred CCCcccce
Q psy9408 105 NWPQATFA 112 (219)
Q Consensus 105 g~p~vt~v 112 (219)
|+|.+|..
T Consensus 107 ~IP~vt~M 114 (431)
T TIGR01918 107 NVPAVTSM 114 (431)
T ss_pred CCCeEEEe
Confidence 99998765
No 28
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=90.66 E-value=1.8 Score=32.63 Aligned_cols=51 Identities=16% Similarity=0.245 Sum_probs=36.2
Q ss_pred HHHHHHHHhCCCCEEEEEecCC-C---CCHHHHHHHHHHHHHhcCCCEEEEcccc
Q psy9408 38 KEILQIAMAMGVDRAILIETDT-I---LQSLSVAKLLQVIVKKENPQLVILGKQS 88 (219)
Q Consensus 38 ~~~lr~~~a~GaD~v~~v~~~~-~---~d~~~~A~~la~~ik~~~~dlVl~G~~s 88 (219)
.+..+.+-.+|+++.+.+.-+. . ++.....+.|.+++++.+||+|++....
T Consensus 56 ~E~~~a~~~lGv~~~~~l~~~D~~~~~~~~~~~~~~l~~~i~~~~p~~V~t~~~~ 110 (128)
T PF02585_consen 56 AEARAAAEILGVENVIFLDFPDGQLPGWSWEELVRDLEDLIREFRPDVVFTPDPD 110 (128)
T ss_dssp HHHHHHHHHCT-EEEEEEEECTTSCTCHHHHHHHHHHHHHHHHH-ESEEEEE-ST
T ss_pred HHHHHHHHHcCCceEEEeecCCCCcccccHHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 3445556678998888887543 2 2468889999999999999999998765
No 29
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=90.28 E-value=1.4 Score=40.70 Aligned_cols=79 Identities=11% Similarity=0.038 Sum_probs=54.9
Q ss_pred ecCcchHHHHHHHHhCCCCEEE-EEecCC--CCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHH----HHc
Q psy9408 32 CGNKKCKEILQIAMAMGVDRAI-LIETDT--ILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLA----ALL 104 (219)
Q Consensus 32 ~G~~~~~~~lr~~~a~GaD~v~-~v~~~~--~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA----~~L 104 (219)
+||. .-.+..++...+.=+- +++.|. .-+.+...+-|.+.+++.+||+++||-...-+.-+...+.+| +.|
T Consensus 29 vGp~--~~~~~~~~~~~~eVvaTiiCGDnYf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~ 106 (431)
T TIGR01917 29 LPPI--SQNLDKLIEEDAEIVATVVCGDSFFGENLEEAKAKVLEMIKGANPDIFIAGPAFNAGRYGMAAGAITKAVQDEL 106 (431)
T ss_pred cCcH--HHHHHHHhcCCCEEEEEEEECchhhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhh
Confidence 6653 2445555555454433 344454 236788888999999999999999999887776566555555 569
Q ss_pred CCCcccce
Q psy9408 105 NWPQATFA 112 (219)
Q Consensus 105 g~p~vt~v 112 (219)
|+|.+|..
T Consensus 107 ~IP~vtaM 114 (431)
T TIGR01917 107 GIKAFTAM 114 (431)
T ss_pred CCCeEEEe
Confidence 99998765
No 30
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=90.27 E-value=3.2 Score=37.63 Aligned_cols=100 Identities=13% Similarity=0.107 Sum_probs=60.0
Q ss_pred CHhhHHHHHHHHHhhhhcCCCcEEEEEEecCc------------chHHHHHHHHh----------CCCCEEEEE-ecCC-
Q psy9408 4 NPFDEIAIESAIRLRESSNKIKEIIAISCGNK------------KCKEILQIAMA----------MGVDRAILI-ETDT- 59 (219)
Q Consensus 4 Np~D~~Ale~A~~l~e~~g~g~~V~av~~G~~------------~~~~~lr~~~a----------~GaD~v~~v-~~~~- 59 (219)
++....|+++|.+++++.|.+.+|+.+.+=+. ..++.+.++.+ .|..--..+ ..++
T Consensus 15 Se~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~~~~~~~~~~eelle~~~~~~~~~l~~~~~gV~ve~~vv~~~~~ 94 (357)
T PRK12652 15 SVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDPEGQDELAAAEELLERVEVWATEDLGDDASSVTIETALLGTDEY 94 (357)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCceEEEEEecccc
Confidence 45678899999999987411368877776532 11222332222 255433333 2111
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHH
Q psy9408 60 ILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAAL 103 (219)
Q Consensus 60 ~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~ 103 (219)
.+.+-..++.|.+.+++.+.|+|++|-.-.-+.+.++-.=+-..
T Consensus 95 ~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~~~~~~~~~~~~~~ 138 (357)
T PRK12652 95 LFGPGDYAEVLIAYAEEHGIDRVVLDPEYNPGGTAPMLQPLERE 138 (357)
T ss_pred ccCCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCcccchHHHH
Confidence 12223457899999999999999999988766655543333333
No 31
>KOG0081|consensus
Probab=89.92 E-value=0.51 Score=38.28 Aligned_cols=64 Identities=23% Similarity=0.236 Sum_probs=39.7
Q ss_pred hCCCCEEEEEecCC-CCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcH----HHHHHHHcCCCcc
Q psy9408 46 AMGVDRAILIETDT-ILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQT----GQMLAALLNWPQA 109 (219)
Q Consensus 46 a~GaD~v~~v~~~~-~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v----~~~lA~~Lg~p~v 109 (219)
+||.=-++-+.... ..+..-+-+.|...+--++||+||||+.+.=.+-++| +..||.++|+|++
T Consensus 91 AMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYf 159 (219)
T KOG0081|consen 91 AMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYF 159 (219)
T ss_pred hccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCee
Confidence 56654444444322 2244444444444444468999999998854444444 6789999999987
No 32
>PRK11175 universal stress protein UspE; Provisional
Probab=89.75 E-value=3.4 Score=35.59 Aligned_cols=99 Identities=16% Similarity=0.047 Sum_probs=58.5
Q ss_pred CHhhHHHHHHHHHhhhhcCCCcEEEEEEecC------------cc-----------hHHHHHHHH----hCCCCEEEEEe
Q psy9408 4 NPFDEIAIESAIRLRESSNKIKEIIAISCGN------------KK-----------CKEILQIAM----AMGVDRAILIE 56 (219)
Q Consensus 4 Np~D~~Ale~A~~l~e~~g~g~~V~av~~G~------------~~-----------~~~~lr~~~----a~GaD~v~~v~ 56 (219)
.+.+..||..|+++++++ +.+++.+..=+ .. ..+.+++.. ..|.+--..+.
T Consensus 13 s~~~~~al~~a~~lA~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~ 90 (305)
T PRK11175 13 NQDDQPALRRAVYLAQRN--GGKITAFLPIYDFSYEMTTLLSPDEREAMRQGVISQRTAWIREQAKPYLDAGIPIEIKVV 90 (305)
T ss_pred CccccHHHHHHHHHHHhc--CCCEEEEEeccCchhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEEEEe
Confidence 456789999999999986 35777654311 00 011123322 34554433332
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCc----CcHHHHHHHHcCCCcc
Q psy9408 57 TDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDN----NQTGQMLAALLNWPQA 109 (219)
Q Consensus 57 ~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~----~~v~~~lA~~Lg~p~v 109 (219)
.. -++ +..|.+.+++.++|+|++|....++-. |.++-+|.....+|++
T Consensus 91 ~~--g~~---~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~gs~~~~l~~~~~~pvl 142 (305)
T PRK11175 91 WH--NRP---FEAIIQEVIAGGHDLVVKMTHQHDKLESVIFTPTDWHLLRKCPCPVL 142 (305)
T ss_pred cC--CCc---HHHHHHHHHhcCCCEEEEeCCCCcHHHhhccChhHHHHHhcCCCCEE
Confidence 11 122 478888888999999999987543211 3345566677777754
No 33
>PRK09982 universal stress protein UspD; Provisional
Probab=89.12 E-value=4.6 Score=30.91 Aligned_cols=75 Identities=17% Similarity=0.213 Sum_probs=45.0
Q ss_pred HhhHHHHHHHHHhhhhcCCCcEEEEEEecCc--------------chHH--------HHHHHHh-CC-CCEEEEEecCCC
Q psy9408 5 PFDEIAIESAIRLRESSNKIKEIIAISCGNK--------------KCKE--------ILQIAMA-MG-VDRAILIETDTI 60 (219)
Q Consensus 5 p~D~~Ale~A~~l~e~~g~g~~V~av~~G~~--------------~~~~--------~lr~~~a-~G-aD~v~~v~~~~~ 60 (219)
+....|++.|.+++.+. +.+++.+.+=+. ...+ .++++.. .+ .+--+.+..
T Consensus 14 ~~s~~al~~A~~lA~~~--~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~--- 88 (142)
T PRK09982 14 EEDALLVNKALELARHN--DAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYKLTKNIQWPKTKLRIER--- 88 (142)
T ss_pred cchHHHHHHHHHHHHHh--CCeEEEEEEccCcchhchhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEEe---
Confidence 45679999999999886 468888766321 0001 1222211 12 111122221
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEccc
Q psy9408 61 LQSLSVAKLLQVIVKKENPQLVILGKQ 87 (219)
Q Consensus 61 ~d~~~~A~~la~~ik~~~~dlVl~G~~ 87 (219)
-+ .+..|.+.+++.++|+|++|..
T Consensus 89 G~---p~~~I~~~A~~~~aDLIVmG~~ 112 (142)
T PRK09982 89 GE---MPETLLEIMQKEQCDLLVCGHH 112 (142)
T ss_pred cC---HHHHHHHHHHHcCCCEEEEeCC
Confidence 12 3578888899999999999975
No 34
>PRK10490 sensor protein KdpD; Provisional
Probab=89.04 E-value=4.1 Score=41.30 Aligned_cols=78 Identities=17% Similarity=0.203 Sum_probs=59.0
Q ss_pred CHhhHHHHHHHHHhhhhcCCCcEEEEEEecCcc-----------hHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHH
Q psy9408 4 NPFDEIAIESAIRLRESSNKIKEIIAISCGNKK-----------CKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQV 72 (219)
Q Consensus 4 Np~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~-----------~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~ 72 (219)
+|..+.++..|.||++++ +.+.+|+.+-.+. ..+.++-|-..|+. +..+..+ .++..|.+
T Consensus 260 ~~~~~~lIr~~~rlA~~~--~a~~~~l~V~~~~~~~~~~~~~~~l~~~~~lA~~lGa~-~~~~~~~------dva~~i~~ 330 (895)
T PRK10490 260 NTGSEKLVRTAARLAARL--GSVWHAVYVETPRLHRLPEKKRRAILSALRLAQELGAE-TATLSDP------AEEKAVLR 330 (895)
T ss_pred CcchHHHHHHHHHHHHhc--CCCEEEEEEecCCcCcCCHHHHHHHHHHHHHHHHcCCE-EEEEeCC------CHHHHHHH
Confidence 678899999999999997 4688888886541 12234445568999 5555532 36799999
Q ss_pred HHHhcCCCEEEEcccccC
Q psy9408 73 IVKKENPQLVILGKQSID 90 (219)
Q Consensus 73 ~ik~~~~dlVl~G~~s~d 90 (219)
+++..+.+-|++|.+...
T Consensus 331 ~A~~~~vt~IViG~s~~~ 348 (895)
T PRK10490 331 YAREHNLGKIIIGRRASR 348 (895)
T ss_pred HHHHhCCCEEEECCCCCC
Confidence 999999999999998643
No 35
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=88.94 E-value=3.5 Score=38.55 Aligned_cols=80 Identities=18% Similarity=0.218 Sum_probs=43.4
Q ss_pred HHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccC
Q psy9408 11 IESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSID 90 (219)
Q Consensus 11 le~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d 90 (219)
+..+..|.+.+ |.++++++..... ++.+++....+-+..+.+++. +.. .+.+.+++.+||+++.|.
T Consensus 340 ~~~~~~l~~El--Gmevv~~~~~~~~-~~~~~~~~~~~~~~~i~i~d~---~~~----e~~~~~~~~~pDliig~s---- 405 (461)
T TIGR01860 340 WHWTKALEDDL--GMQVVAMSSKFGH-QEDFEKVIARGKEGTIYIDDG---NEL----EFFEVLDLIKPDVIFTGP---- 405 (461)
T ss_pred HHHHHHHHHhC--CCEEEEEeeecCC-HHHHHHHHHhcCCCeEEEeCC---CHH----HHHHHHHhcCCCEEEeCC----
Confidence 34445555444 3555555443221 333444444444444444422 111 233456778999988553
Q ss_pred CCcCcHHHHHHHHcCCCcc
Q psy9408 91 SDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 91 ~~~~~v~~~lA~~Lg~p~v 109 (219)
..-.+|.+||+|++
T Consensus 406 -----~~~~~A~klgiP~v 419 (461)
T TIGR01860 406 -----RVGELVKKLHIPYV 419 (461)
T ss_pred -----cchhhHhhcCCCEE
Confidence 33568999999997
No 36
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=88.68 E-value=5.8 Score=35.65 Aligned_cols=97 Identities=19% Similarity=0.234 Sum_probs=60.1
Q ss_pred CCHhhHHHHHHH-HHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCC-----CCHHHHHHHHHHHHHh
Q psy9408 3 INPFDEIAIESA-IRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTI-----LQSLSVAKLLQVIVKK 76 (219)
Q Consensus 3 iNp~D~~Ale~A-~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~-----~d~~~~A~~la~~ik~ 76 (219)
.||---+-.... .+|.++ |.+|...+=......+.|+ .+|.+-..+-..... .........|..++++
T Consensus 8 ~~p~hvhfFk~~I~eL~~~---GheV~it~R~~~~~~~LL~---~yg~~y~~iG~~g~~~~~Kl~~~~~R~~~l~~~~~~ 81 (335)
T PF04007_consen 8 THPAHVHFFKNIIRELEKR---GHEVLITARDKDETEELLD---LYGIDYIVIGKHGDSLYGKLLESIERQYKLLKLIKK 81 (335)
T ss_pred CCchHHHHHHHHHHHHHhC---CCEEEEEEeccchHHHHHH---HcCCCeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 344443333332 344443 4678777765544444444 689998877553321 1222344556677888
Q ss_pred cCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccce
Q psy9408 77 ENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFA 112 (219)
Q Consensus 77 ~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v 112 (219)
.+||++++...- -++++|..||.|++...
T Consensus 82 ~~pDv~is~~s~-------~a~~va~~lgiP~I~f~ 110 (335)
T PF04007_consen 82 FKPDVAISFGSP-------EAARVAFGLGIPSIVFN 110 (335)
T ss_pred hCCCEEEecCcH-------HHHHHHHHhCCCeEEEe
Confidence 899999965543 67899999999988544
No 37
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=88.60 E-value=2.9 Score=39.09 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=24.5
Q ss_pred HHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCccc
Q psy9408 69 LLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQAT 110 (219)
Q Consensus 69 ~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt 110 (219)
.+.+.+++.+||++|.|.. .-.+|.++|+|++.
T Consensus 386 e~~~~i~~~~pDllig~~~---------~~~~a~k~gip~~~ 418 (457)
T TIGR01284 386 ELEEIIEKYKPDIILTGIR---------EGELAKKLGVPYIN 418 (457)
T ss_pred HHHHHHHhcCCCEEEecCC---------cchhhhhcCCCEEE
Confidence 3456677789999986553 34689999999874
No 38
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=87.53 E-value=7.8 Score=28.95 Aligned_cols=102 Identities=16% Similarity=0.085 Sum_probs=61.5
Q ss_pred CCCHhhHHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCC-CCCHHHHHHHHHHHHHhcCCC
Q psy9408 2 SINPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDT-ILQSLSVAKLLQVIVKKENPQ 80 (219)
Q Consensus 2 ~iNp~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~-~~d~~~~A~~la~~ik~~~~d 80 (219)
+-|-++.+....+..|+++ |.+|..++++... ++. ....|. +++.+.-+. ..-.......+.+.+++.+||
T Consensus 5 i~~~~~~~~~~~~~~L~~~---g~~V~ii~~~~~~-~~~---~~~~~i-~~~~~~~~~k~~~~~~~~~~l~k~ik~~~~D 76 (139)
T PF13477_consen 5 IGNTPSTFIYNLAKELKKR---GYDVHIITPRNDY-EKY---EIIEGI-KVIRLPSPRKSPLNYIKYFRLRKIIKKEKPD 76 (139)
T ss_pred EecCcHHHHHHHHHHHHHC---CCEEEEEEcCCCc-hhh---hHhCCe-EEEEecCCCCccHHHHHHHHHHHHhccCCCC
Confidence 3455566788889999886 4799999997653 221 223444 344444222 111122234778889999999
Q ss_pred EEEEcccccCCCcCcHHHHHHHHcC-CCcccceeE
Q psy9408 81 LVILGKQSIDSDNNQTGQMLAALLN-WPQATFASK 114 (219)
Q Consensus 81 lVl~G~~s~d~~~~~v~~~lA~~Lg-~p~vt~v~~ 114 (219)
+|.+-.... .+-++...+..++ .|.+..+-+
T Consensus 77 vIh~h~~~~---~~~~~~l~~~~~~~~~~i~~~hg 108 (139)
T PF13477_consen 77 VIHCHTPSP---YGLFAMLAKKLLKNKKVIYTVHG 108 (139)
T ss_pred EEEEecCCh---HHHHHHHHHHHcCCCCEEEEecC
Confidence 998766532 1334545556667 777755543
No 39
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=86.79 E-value=8.6 Score=32.04 Aligned_cols=76 Identities=21% Similarity=0.252 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEc
Q psy9408 6 FDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILG 85 (219)
Q Consensus 6 ~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G 85 (219)
.+.+||-.|.+ .... +.+|.+|.-..+++ -.+..|..+|....++ +.....+-+++-..|.+.+++.+||+|++.
T Consensus 12 SNlqaiida~~-~~~~--~a~i~~Visd~~~A-~~lerA~~~gIpt~~~-~~k~~~~r~~~d~~l~~~l~~~~~dlvvLA 86 (200)
T COG0299 12 SNLQAIIDAIK-GGKL--DAEIVAVISDKADA-YALERAAKAGIPTVVL-DRKEFPSREAFDRALVEALDEYGPDLVVLA 86 (200)
T ss_pred ccHHHHHHHHh-cCCC--CcEEEEEEeCCCCC-HHHHHHHHcCCCEEEe-ccccCCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 35566666655 2222 36888888776654 5688899999998555 322234678899999999999999999875
Q ss_pred c
Q psy9408 86 K 86 (219)
Q Consensus 86 ~ 86 (219)
.
T Consensus 87 G 87 (200)
T COG0299 87 G 87 (200)
T ss_pred c
Confidence 4
No 40
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=86.60 E-value=8.1 Score=30.99 Aligned_cols=75 Identities=16% Similarity=0.203 Sum_probs=52.5
Q ss_pred EEEecCcc----hHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHc
Q psy9408 29 AISCGNKK----CKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALL 104 (219)
Q Consensus 29 av~~G~~~----~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~L 104 (219)
++.||+.+ .++....+-.+|.+.-+.+.. ..-.++.+.+.+.++ ++.++++|+++.. -.+++|+.+|...
T Consensus 2 ~IimGS~SD~~~~~~a~~~L~~~gi~~dv~V~S-aHRtp~~~~~~~~~a-~~~g~~viIa~AG----~aa~Lpgvva~~t 75 (156)
T TIGR01162 2 GIIMGSDSDLPTMKKAADILEEFGIPYELRVVS-AHRTPELMLEYAKEA-EERGIKVIIAGAG----GAAHLPGMVAALT 75 (156)
T ss_pred EEEECcHhhHHHHHHHHHHHHHcCCCeEEEEEC-cccCHHHHHHHHHHH-HHCCCeEEEEeCC----ccchhHHHHHhcc
Confidence 57888765 344556666799997777763 244555554444433 3457899998874 3588999999999
Q ss_pred CCCcc
Q psy9408 105 NWPQA 109 (219)
Q Consensus 105 g~p~v 109 (219)
.+|++
T Consensus 76 ~~PVI 80 (156)
T TIGR01162 76 PLPVI 80 (156)
T ss_pred CCCEE
Confidence 99977
No 41
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=85.77 E-value=6.2 Score=37.48 Aligned_cols=33 Identities=27% Similarity=0.346 Sum_probs=25.1
Q ss_pred HHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 68 KLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 68 ~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
.-+.+.+++.+||+|| |.+ ..-.+|.+||+|++
T Consensus 352 ~el~~~i~~~~Pdlii-G~~--------~er~~a~~lgiP~~ 384 (519)
T PRK02910 352 LEVEDAIAEAAPELVL-GTQ--------MERHSAKRLGIPCA 384 (519)
T ss_pred HHHHHHHHhcCCCEEE-Ecc--------hHHHHHHHcCCCEE
Confidence 3566778888999999 332 45568999999986
No 42
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=85.56 E-value=4.7 Score=38.29 Aligned_cols=33 Identities=9% Similarity=0.188 Sum_probs=24.4
Q ss_pred HHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 68 KLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 68 ~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
..+.+.+++.+||+||-+. ..-.+|.+||+|++
T Consensus 364 ~ei~~~I~~~~pdliiGs~---------~er~ia~~lgiP~~ 396 (513)
T CHL00076 364 TEVGDMIARVEPSAIFGTQ---------MERHIGKRLDIPCG 396 (513)
T ss_pred HHHHHHHHhcCCCEEEECc---------hhhHHHHHhCCCEE
Confidence 4556777778999999433 34456899999985
No 43
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=85.24 E-value=9.7 Score=30.53 Aligned_cols=77 Identities=16% Similarity=0.160 Sum_probs=53.5
Q ss_pred EEEEEecCcchHHH----HHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHH
Q psy9408 27 IIAISCGNKKCKEI----LQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAA 102 (219)
Q Consensus 27 V~av~~G~~~~~~~----lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~ 102 (219)
-+++.||..+.-+. ...+-.+|.+--..+-. .+-.|+..-+ .++-.++.++++|+.|.. ...++|+++|+
T Consensus 4 ~V~IIMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvS-AHRTPe~m~~-ya~~a~~~g~~viIAgAG----gAAHLPGmvAa 77 (162)
T COG0041 4 KVGIIMGSKSDWDTMKKAAEILEEFGVPYEVRVVS-AHRTPEKMFE-YAEEAEERGVKVIIAGAG----GAAHLPGMVAA 77 (162)
T ss_pred eEEEEecCcchHHHHHHHHHHHHHcCCCeEEEEEe-ccCCHHHHHH-HHHHHHHCCCeEEEecCc----chhhcchhhhh
Confidence 47899998864443 34455689887665542 2445554333 334455678999999984 46899999999
Q ss_pred HcCCCcc
Q psy9408 103 LLNWPQA 109 (219)
Q Consensus 103 ~Lg~p~v 109 (219)
+--.|++
T Consensus 78 ~T~lPVi 84 (162)
T COG0041 78 KTPLPVI 84 (162)
T ss_pred cCCCCeE
Confidence 9988877
No 44
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=85.15 E-value=4.7 Score=27.94 Aligned_cols=28 Identities=21% Similarity=0.485 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhcCCCEEEEcccccCCC
Q psy9408 65 SVAKLLQVIVKKENPQLVILGKQSIDSD 92 (219)
Q Consensus 65 ~~A~~la~~ik~~~~dlVl~G~~s~d~~ 92 (219)
..-+.+.+..++.+.|.|+.|.+..|..
T Consensus 35 ~~~~~~~~~a~~~~~~~Iv~G~~~~d~~ 62 (86)
T cd01984 35 AFVRILKRLAAEEGADVIILGHNADDVA 62 (86)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCchhhh
Confidence 5567777888888999999999876643
No 45
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=84.51 E-value=9.5 Score=33.46 Aligned_cols=48 Identities=19% Similarity=0.178 Sum_probs=33.3
Q ss_pred HHHHHHHhCCCCEEEEEecCCC-----------------CCHHHHHHHHHHHHHhcCCCEEEEcc
Q psy9408 39 EILQIAMAMGVDRAILIETDTI-----------------LQSLSVAKLLQVIVKKENPQLVILGK 86 (219)
Q Consensus 39 ~~lr~~~a~GaD~v~~v~~~~~-----------------~d~~~~A~~la~~ik~~~~dlVl~G~ 86 (219)
|..+.+-.+|++..++--.|.+ .+....+..|.+++++.+||+|++-.
T Consensus 65 E~~~Aa~~LGv~~~~Lg~~Dsgl~~~~~~~~~~~~~~~~~~~~~~~~~L~~iIr~~~PdvVvT~d 129 (283)
T TIGR03446 65 EMAEAAEILGVEHRWLGFVDSGLPEGDPLPPLPEGCFALEPLEEAAEPLVRVIREFRPHVITTYD 129 (283)
T ss_pred HHHHHHHHcCCCeEEeccccCCccccCccccCCccccccCCHHHHHHHHHHHHHHcCCEEEEecC
Confidence 3445667799987553111111 25677889999999999999999853
No 46
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=84.35 E-value=5.9 Score=37.55 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=24.9
Q ss_pred HHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 69 LLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 69 ~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
-+.+.+++.+||+||-+. ..-.+|.+||+|++
T Consensus 355 ei~~~i~~~~pdliiG~~---------~er~~a~~lgip~~ 386 (511)
T TIGR01278 355 EVADAIAALEPELVLGTQ---------MERHSAKRLDIPCG 386 (511)
T ss_pred HHHHHHHhcCCCEEEECh---------HHHHHHHHcCCCEE
Confidence 666778888999999433 55667899999986
No 47
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=84.34 E-value=6.7 Score=36.00 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=22.5
Q ss_pred HHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCccc
Q psy9408 71 QVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQAT 110 (219)
Q Consensus 71 a~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt 110 (219)
.+.+++.+||+|+.+.. .-.+|.+||+|++.
T Consensus 351 ~~~~~~~~pdliig~s~---------~~~~a~~lgip~~~ 381 (415)
T cd01977 351 FEILEMLKPDIILTGPR---------VGELVKKLHVPYVN 381 (415)
T ss_pred HHHHHhcCCCEEEecCc---------cchhhhhcCCCEEe
Confidence 34557778999885442 33689999999875
No 48
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=82.69 E-value=28 Score=30.13 Aligned_cols=90 Identities=20% Similarity=0.259 Sum_probs=53.2
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEe----cCc----chHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCE
Q psy9408 10 AIESAIRLRESSNKIKEIIAISC----GNK----KCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQL 81 (219)
Q Consensus 10 Ale~A~~l~e~~g~g~~V~av~~----G~~----~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dl 81 (219)
.+..+.+.+.+. |.+|.+-++ |+. ...+.++.+..+|+|++++.+.-....|+.+.+.+..+.++. +|+
T Consensus 120 ~~~~~i~~ak~~--G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~-~~~ 196 (273)
T cd07941 120 MIRDSVAYLKSH--GREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWLVLCDTNGGTLPHEIAEIVKEVRERL-PGV 196 (273)
T ss_pred HHHHHHHHHHHc--CCeEEEeEEeccccCCCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhC-CCC
Confidence 344555555554 356654333 311 134566888999999988766444679999988888777665 453
Q ss_pred EEEcccccCCCcCcHHHHHHHH
Q psy9408 82 VILGKQSIDSDNNQTGQMLAAL 103 (219)
Q Consensus 82 Vl~G~~s~d~~~~~v~~~lA~~ 103 (219)
-| |-..-+..+-.++-.+|+.
T Consensus 197 ~l-~~H~Hnd~Gla~An~laA~ 217 (273)
T cd07941 197 PL-GIHAHNDSGLAVANSLAAV 217 (273)
T ss_pred ee-EEEecCCCCcHHHHHHHHH
Confidence 33 3333333444566556554
No 49
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=82.45 E-value=9.5 Score=30.36 Aligned_cols=76 Identities=12% Similarity=0.193 Sum_probs=44.7
Q ss_pred EEEEecCcc----hHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHH
Q psy9408 28 IAISCGNKK----CKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAAL 103 (219)
Q Consensus 28 ~av~~G~~~----~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~ 103 (219)
++|.||+.+ +++..+.+-.+|..--+.+.. ..-.++.+.+.+..+ ++.++++|+++..- .+.+|+.+|..
T Consensus 3 V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~~V~s-aHR~p~~l~~~~~~~-~~~~~~viIa~AG~----~a~Lpgvva~~ 76 (150)
T PF00731_consen 3 VAIIMGSTSDLPIAEEAAKTLEEFGIPYEVRVAS-AHRTPERLLEFVKEY-EARGADVIIAVAGM----SAALPGVVASL 76 (150)
T ss_dssp EEEEESSGGGHHHHHHHHHHHHHTT-EEEEEE---TTTSHHHHHHHHHHT-TTTTESEEEEEEES----S--HHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHcCCCEEEEEEe-ccCCHHHHHHHHHHh-ccCCCEEEEEECCC----cccchhhheec
Confidence 567888765 344555566788666555552 244555443333322 22467888887743 57899999999
Q ss_pred cCCCcc
Q psy9408 104 LNWPQA 109 (219)
Q Consensus 104 Lg~p~v 109 (219)
...|+|
T Consensus 77 t~~PVI 82 (150)
T PF00731_consen 77 TTLPVI 82 (150)
T ss_dssp SSS-EE
T ss_pred cCCCEE
Confidence 999977
No 50
>TIGR03445 mycothiol_MshB 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase. Members of this protein family are 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase, the MshB protein of mycothiol biosynthesis in Mycobacterium tuberculosis and related species.
Probab=81.34 E-value=13 Score=32.56 Aligned_cols=47 Identities=19% Similarity=0.282 Sum_probs=34.0
Q ss_pred HHHHHHHHhCCCCEEEEEec-----CCC---------------CCHHHHHHHHHHHHHhcCCCEEEE
Q psy9408 38 KEILQIAMAMGVDRAILIET-----DTI---------------LQSLSVAKLLQVIVKKENPQLVIL 84 (219)
Q Consensus 38 ~~~lr~~~a~GaD~v~~v~~-----~~~---------------~d~~~~A~~la~~ik~~~~dlVl~ 84 (219)
+|..+.+-.+|++..+.+.. |.+ .+.......|+++|++.+||+|++
T Consensus 63 ~E~~~Aa~~LGv~~~~~L~~~~~~~Dsgl~~~p~~~~~~~~~~~~~~e~~~~l~~~Ir~~~PdvViT 129 (284)
T TIGR03445 63 GELTAALRALGVGDPRFLGGAGRWRDSGMAGTPSRSRPRAFVDADVDEAAGALVAVIREVRPHVVVT 129 (284)
T ss_pred HHHHHHHHHcCCCeEEEcCCcCcccCCCCCCCCcccCccccccCCHHHHHHHHHHHHHHhCCcEEEe
Confidence 44556677899998776642 111 123567899999999999999998
No 51
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=80.03 E-value=19 Score=33.32 Aligned_cols=33 Identities=18% Similarity=0.158 Sum_probs=25.3
Q ss_pred HHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 68 KLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 68 ~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
.-+.+.+++.+||+++.+. ..-.+|.++|+|++
T Consensus 362 ~e~~~~l~~~~~dliiG~s---------~~~~~a~~~~ip~~ 394 (429)
T cd03466 362 FDIESYAKELKIDVLIGNS---------YGRRIAEKLGIPLI 394 (429)
T ss_pred HHHHHHHHhcCCCEEEECc---------hhHHHHHHcCCCEE
Confidence 3456677778899999443 45689999999987
No 52
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=79.41 E-value=34 Score=32.53 Aligned_cols=101 Identities=13% Similarity=0.079 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHhhhhcCCCcEE-EEE--EecCcc----hHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcC
Q psy9408 6 FDEIAIESAIRLRESSNKIKEI-IAI--SCGNKK----CKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKEN 78 (219)
Q Consensus 6 ~D~~Ale~A~~l~e~~g~g~~V-~av--~~G~~~----~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~ 78 (219)
.|...++.+.+...+.| ..+ .++ ++++.. ..+.++++..+|+|.+.+.+.-....|..+...+..+-++.+
T Consensus 121 ndv~nl~~ai~~vk~ag--~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~ 198 (499)
T PRK12330 121 NDPRNLEHAMKAVKKVG--KHAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACG 198 (499)
T ss_pred ChHHHHHHHHHHHHHhC--CeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCC
Confidence 35567777777777654 444 344 446654 234578899999998777654446789988888888777665
Q ss_pred CCEEEEcccccCCCcCcHHHHHHH-HcCCCcc
Q psy9408 79 PQLVILGKQSIDSDNNQTGQMLAA-LLNWPQA 109 (219)
Q Consensus 79 ~dlVl~G~~s~d~~~~~v~~~lA~-~Lg~p~v 109 (219)
+++-+-=++- +..|-.++-.+|+ ..|+-.+
T Consensus 199 ~~ipI~~H~H-nt~GlA~An~laAieAGad~v 229 (499)
T PRK12330 199 EDTRINLHCH-STTGVTLVSLMKAIEAGVDVV 229 (499)
T ss_pred CCCeEEEEeC-CCCCcHHHHHHHHHHcCCCEE
Confidence 5655433333 2234445555544 5554433
No 53
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=79.38 E-value=11 Score=38.12 Aligned_cols=79 Identities=16% Similarity=0.182 Sum_probs=48.4
Q ss_pred CHhhHHHHHHHHHhhhhcCCCcEEEEEEecCcc-------------------------------hHHHHHHHHh--CCCC
Q psy9408 4 NPFDEIAIESAIRLRESSNKIKEIIAISCGNKK-------------------------------CKEILQIAMA--MGVD 50 (219)
Q Consensus 4 Np~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~-------------------------------~~~~lr~~~a--~GaD 50 (219)
.|.|.+||.+|.|+++. ++.++|++-+=+.+ .++.+++... .+-+
T Consensus 640 G~DDREALa~a~rma~~--p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~ef~~~~~~~~ 717 (832)
T PLN03159 640 GPDDREALAYAWRMSEH--PGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNE 717 (832)
T ss_pred CcchHHHHHHHHHHhcC--CCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcCCCC
Confidence 68999999999999975 35678877763221 1112222222 2224
Q ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEccc
Q psy9408 51 RAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQ 87 (219)
Q Consensus 51 ~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~ 87 (219)
++-..+ .--.|...+..+|.+.- .+|||++.|+.
T Consensus 718 ~v~y~E-~~V~~~~e~~~~l~~~~--~~ydL~iVGr~ 751 (832)
T PLN03159 718 SIVYTE-KVVSNGEETVAAIRSMD--SAHDLFIVGRG 751 (832)
T ss_pred ceEEEE-EecCCHHHHHHHHHHhh--ccCcEEEEecC
Confidence 444443 11346777777776653 25999999984
No 54
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=79.20 E-value=16 Score=34.86 Aligned_cols=29 Identities=14% Similarity=0.311 Sum_probs=22.8
Q ss_pred HHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 72 VIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 72 ~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
+.+++.+||++|.|... -.+|.++|+|++
T Consensus 392 ~~l~~~~~Dllig~s~~---------~~~A~k~gIP~l 420 (513)
T TIGR01861 392 EAMEMLKPDIILTGKRP---------GEVSKKMRVPYL 420 (513)
T ss_pred HHHHhcCCCEEEecCcc---------chhHhhcCCCEE
Confidence 45677899999976642 278999999985
No 55
>PRK06849 hypothetical protein; Provisional
Probab=79.03 E-value=12 Score=33.71 Aligned_cols=71 Identities=21% Similarity=0.157 Sum_probs=52.5
Q ss_pred HHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEccc
Q psy9408 8 EIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQ 87 (219)
Q Consensus 8 ~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~ 87 (219)
..+|+.|+.+++. |.+|+++..-+.. +- ..+..+|+-+.+..+ ..|...|.+.|.++++++++|+|+.+..
T Consensus 15 ~~~l~iar~l~~~---G~~Vi~~d~~~~~----~~-~~s~~~d~~~~~p~p-~~d~~~~~~~L~~i~~~~~id~vIP~~e 85 (389)
T PRK06849 15 PAALELARLFHNA---GHTVILADSLKYP----LS-RFSRAVDGFYTIPSP-RWDPDAYIQALLSIVQRENIDLLIPTCE 85 (389)
T ss_pred HHHHHHHHHHHHC---CCEEEEEeCCchH----HH-HHHHhhhheEEeCCC-CCCHHHHHHHHHHHHHHcCCCEEEECCh
Confidence 3688899999885 4788877654321 11 334567888877633 5688899999999999999999998765
No 56
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=78.85 E-value=6.1 Score=32.15 Aligned_cols=73 Identities=22% Similarity=0.150 Sum_probs=46.7
Q ss_pred CCHHHHHHH---HHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccceeEEEEeeCCeEEEEEEcCCeEEEEE
Q psy9408 61 LQSLSVAKL---LQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIVLKKNNKILVTQEIEDGKETIL 137 (219)
Q Consensus 61 ~d~~~~A~~---la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~~~~~~~~~R~~~gG~~~~~ 137 (219)
.++..+... +++..+..++|.|++-.+. |=-+|..+|..||.|++.--..-++. .+.+......+.|..+++
T Consensus 33 ~~~~~~~~~i~~~~~~~~~~~id~Iv~iea~----Gi~~a~~vA~~Lgvp~v~vRK~~kl~-~~~~~~~~~~~~~~~~l~ 107 (179)
T COG0503 33 GDPELLAKLIDELAERYKDDGIDKIVTIEAR----GIPLAAAVALELGVPFVPVRKKGKLP-EESVVETYYLEYGSETLE 107 (179)
T ss_pred cCcHHHHHHHHHHHHHhcccCCCEEEEEccc----cchhHHHHHHHhCCCEEEEEecCCCC-CcceeEEEEEeccceEEE
Confidence 344444444 5555555679999987764 56799999999999998554432332 344555556666554444
Q ss_pred E
Q psy9408 138 L 138 (219)
Q Consensus 138 ~ 138 (219)
+
T Consensus 108 ~ 108 (179)
T COG0503 108 L 108 (179)
T ss_pred E
Confidence 4
No 57
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=78.59 E-value=15 Score=34.06 Aligned_cols=32 Identities=22% Similarity=0.409 Sum_probs=23.1
Q ss_pred HHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCccc
Q psy9408 70 LQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQAT 110 (219)
Q Consensus 70 la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt 110 (219)
+.+.+++.+||+++.+. -.-.+|.+||+|++.
T Consensus 379 ~~~~i~~~~pdllig~s---------~~~~~A~~lgip~~~ 410 (443)
T TIGR01862 379 FEEILEKLKPDIIFSGI---------KEKFVAQKLGVPYRQ 410 (443)
T ss_pred HHHHHHhcCCCEEEEcC---------cchhhhhhcCCCeEe
Confidence 34456777899888433 345689999999884
No 58
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=77.52 E-value=10 Score=33.46 Aligned_cols=69 Identities=17% Similarity=0.250 Sum_probs=48.6
Q ss_pred HHHHHHHHhCCCCEEEEEecCC-------C-C----CHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcC
Q psy9408 38 KEILQIAMAMGVDRAILIETDT-------I-L----QSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLN 105 (219)
Q Consensus 38 ~~~lr~~~a~GaD~v~~v~~~~-------~-~----d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg 105 (219)
...+..++..|+|+++.++-.. + | +.......+++.+++...+.++.+ .|..+...+..+|.+||
T Consensus 107 ak~vA~ll~~~~d~vit~DlH~~~~~~~~~~f~ip~~nl~~~~~la~~l~~~~~~~vVVs---Pd~g~~~~a~~la~~l~ 183 (301)
T PRK07199 107 QRHFARLLSGSFDRLVTVDPHLHRYPSLSEVYPIPAVVLSAAPAIAAWIRAHVPRPLLIG---PDEESEQWVAAVAERAG 183 (301)
T ss_pred HHHHHHHHHhhcCeEEEEeccchhhHHhcCcccCCccccchHHHHHHHHHhcCCCcEEEE---eCCChHHHHHHHHHHhC
Confidence 4456667778999999998431 1 1 334556788888876545666665 34456779999999999
Q ss_pred CCcc
Q psy9408 106 WPQA 109 (219)
Q Consensus 106 ~p~v 109 (219)
+|+.
T Consensus 184 ~~~~ 187 (301)
T PRK07199 184 APHA 187 (301)
T ss_pred CCEE
Confidence 9985
No 59
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=77.41 E-value=46 Score=29.10 Aligned_cols=89 Identities=11% Similarity=0.077 Sum_probs=55.3
Q ss_pred HHHHHHHHhhhhcCCCcEEE---EEEecCc--------chHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhc
Q psy9408 9 IAIESAIRLRESSNKIKEII---AISCGNK--------KCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKE 77 (219)
Q Consensus 9 ~Ale~A~~l~e~~g~g~~V~---av~~G~~--------~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~ 77 (219)
..++.+.+.+.+.| .+|. ..++|.+ ...+..+++..+|+|++++.+.-....|..+.+.+..+.++.
T Consensus 120 ~~~~~~v~~ak~~g--~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~ 197 (287)
T PRK05692 120 ERFEPVAEAAKQAG--VRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEF 197 (287)
T ss_pred HHHHHHHHHHHHcC--CEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHhC
Confidence 34556666666653 5553 2234532 245677889999999888766544679999999888887766
Q ss_pred C-CCEEEEcccccCCCcCcHHHHHHH
Q psy9408 78 N-PQLVILGKQSIDSDNNQTGQMLAA 102 (219)
Q Consensus 78 ~-~dlVl~G~~s~d~~~~~v~~~lA~ 102 (219)
+ ..+-+=.+.. .+-.++-.+|+
T Consensus 198 ~~~~i~~H~Hn~---~Gla~AN~laA 220 (287)
T PRK05692 198 PAERLAGHFHDT---YGQALANIYAS 220 (287)
T ss_pred CCCeEEEEecCC---CCcHHHHHHHH
Confidence 4 3444444433 33445555544
No 60
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=76.82 E-value=18 Score=33.34 Aligned_cols=35 Identities=14% Similarity=0.285 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccc
Q psy9408 68 KLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATF 111 (219)
Q Consensus 68 ~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~ 111 (219)
.-+.+.+++.+||+|+.+. ..-.+|.++|+|++.-
T Consensus 360 ~e~~~~i~~~~pdliig~~---------~~~~~a~~~gip~~~~ 394 (430)
T cd01981 360 TEVGDMIARTEPELIFGTQ---------MERHIGKRLDIPCAVI 394 (430)
T ss_pred HHHHHHHHhhCCCEEEecc---------hhhHHHHHcCCCEEEE
Confidence 3466778888999999544 3344689999998743
No 61
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=76.41 E-value=44 Score=28.55 Aligned_cols=91 Identities=12% Similarity=0.141 Sum_probs=54.1
Q ss_pred HHHHHHHHhhhhcCCCcEEEEEE--ec---CcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy9408 9 IAIESAIRLRESSNKIKEIIAIS--CG---NKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVI 83 (219)
Q Consensus 9 ~Ale~A~~l~e~~g~g~~V~av~--~G---~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl 83 (219)
+.+..+.+.+.+.| .+|.+-. .+ ++...+.++.+.++|+|.+++.+.-....|..+.+.+..+-++.+. +-
T Consensus 112 ~~~~~~i~~ak~~G--~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~--~~ 187 (263)
T cd07943 112 DVSEQHIGAARKLG--MDVVGFLMMSHMASPEELAEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREALDP--TP 187 (263)
T ss_pred HHHHHHHHHHHHCC--CeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCC--ce
Confidence 34555555555543 4543322 22 2224455678888999988776544467899988888887766554 33
Q ss_pred EcccccCCCcCcHHHHHHHH
Q psy9408 84 LGKQSIDSDNNQTGQMLAAL 103 (219)
Q Consensus 84 ~G~~s~d~~~~~v~~~lA~~ 103 (219)
+|-..=+..+-.++-.+|+.
T Consensus 188 l~~H~Hn~~GlA~AN~laAi 207 (263)
T cd07943 188 VGFHGHNNLGLAVANSLAAV 207 (263)
T ss_pred EEEEecCCcchHHHHHHHHH
Confidence 44444444445566666554
No 62
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=76.11 E-value=50 Score=29.62 Aligned_cols=90 Identities=14% Similarity=0.149 Sum_probs=54.7
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEec-Cc----chHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy9408 10 AIESAIRLRESSNKIKEIIAISCG-NK----KCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVIL 84 (219)
Q Consensus 10 Ale~A~~l~e~~g~g~~V~av~~G-~~----~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~ 84 (219)
.+....+.+.+.| .+|.+..+- +. ...+.++.+..+|+|.+++.+.-....|+.+.+.+..+-++.+|++-+
T Consensus 116 ~~~~~i~~ak~~G--~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~i- 192 (337)
T PRK08195 116 VSEQHIGLARELG--MDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAALKPDTQV- 192 (337)
T ss_pred HHHHHHHHHHHCC--CeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCeE-
Confidence 4455555555554 565543332 21 123456778889999988877555679999999999888877666433
Q ss_pred cccccCCCcCcHHHHHHH
Q psy9408 85 GKQSIDSDNNQTGQMLAA 102 (219)
Q Consensus 85 G~~s~d~~~~~v~~~lA~ 102 (219)
|-..=+.-+-.++--+++
T Consensus 193 g~H~HnnlGla~ANslaA 210 (337)
T PRK08195 193 GFHGHNNLGLGVANSLAA 210 (337)
T ss_pred EEEeCCCcchHHHHHHHH
Confidence 333333333334544443
No 63
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=75.78 E-value=27 Score=32.26 Aligned_cols=32 Identities=22% Similarity=0.246 Sum_probs=23.7
Q ss_pred HHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 69 LLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 69 ~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
-+.+.+++.+||+++-+. ..-.+|.+||+|++
T Consensus 368 e~~~~i~~~~pDliiG~s---------~~~~~a~~~gip~v 399 (435)
T cd01974 368 HLRSLLFTEPVDLLIGNT---------YGKYIARDTDIPLV 399 (435)
T ss_pred HHHHHHhhcCCCEEEECc---------cHHHHHHHhCCCEE
Confidence 445566777899987332 45689999999986
No 64
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=75.61 E-value=37 Score=33.00 Aligned_cols=94 Identities=14% Similarity=0.177 Sum_probs=56.8
Q ss_pred HHHHHHHHhhhhcCCCcEE---EEEEecCcc----hHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCE
Q psy9408 9 IAIESAIRLRESSNKIKEI---IAISCGNKK----CKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQL 81 (219)
Q Consensus 9 ~Ale~A~~l~e~~g~g~~V---~av~~G~~~----~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dl 81 (219)
.-++.+.+.+.+.| ..+ ++.+..+.. ..+.++++..+|+|.+++.+.-....|+.+...+.++.+..+..+
T Consensus 124 ~~~~~ai~~ak~~G--~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~~~pi 201 (593)
T PRK14040 124 RNLETALKAVRKVG--AHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRVDVPL 201 (593)
T ss_pred HHHHHHHHHHHHcC--CeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhcCCeE
Confidence 35666667776654 443 233345522 456788899999998877664446799999888888876664333
Q ss_pred EEEcccccCCCcCcHHHHHH-HHcCCC
Q psy9408 82 VILGKQSIDSDNNQTGQMLA-ALLNWP 107 (219)
Q Consensus 82 Vl~G~~s~d~~~~~v~~~lA-~~Lg~p 107 (219)
=+=.+. ..+-.++-.+| ...|+-
T Consensus 202 ~~H~Hn---t~GlA~An~laAieAGa~ 225 (593)
T PRK14040 202 HLHCHA---TTGLSTATLLKAIEAGID 225 (593)
T ss_pred EEEECC---CCchHHHHHHHHHHcCCC
Confidence 333332 23344555554 344443
No 65
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=75.59 E-value=47 Score=31.13 Aligned_cols=95 Identities=13% Similarity=0.109 Sum_probs=57.8
Q ss_pred HHHHHHHhhhhcCCCcEEE---EEEecC----cchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy9408 10 AIESAIRLRESSNKIKEII---AISCGN----KKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLV 82 (219)
Q Consensus 10 Ale~A~~l~e~~g~g~~V~---av~~G~----~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlV 82 (219)
.++.+.+.+.+.| .++. +.+.++ +...+.++++.++|+|++.+.+.-....|..+...+.++-++.+..+=
T Consensus 124 n~~~~v~~ak~~G--~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~~~pi~ 201 (448)
T PRK12331 124 NLETAVKATKKAG--GHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAVTVPLE 201 (448)
T ss_pred HHHHHHHHHHHcC--CeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 4667777777664 4542 344454 123567888999999987776644467899888888877665543333
Q ss_pred EEcccccCCCcCcHHHHHHH-HcCCCcc
Q psy9408 83 ILGKQSIDSDNNQTGQMLAA-LLNWPQA 109 (219)
Q Consensus 83 l~G~~s~d~~~~~v~~~lA~-~Lg~p~v 109 (219)
+=++ +..|-.++-.+|+ ..|+-.+
T Consensus 202 ~H~H---nt~GlA~AN~laAieaGad~v 226 (448)
T PRK12331 202 VHTH---ATSGIAEMTYLKAIEAGADII 226 (448)
T ss_pred EEec---CCCCcHHHHHHHHHHcCCCEE
Confidence 3233 3334446665544 4554443
No 66
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=75.44 E-value=14 Score=29.75 Aligned_cols=77 Identities=16% Similarity=0.214 Sum_probs=51.9
Q ss_pred HHHHHHHHHhhhhcCCCcEEEEEEecCcc---------------hHHHHHHHHhCCCCEEEEEecCC---CCCHHHHHHH
Q psy9408 8 EIAIESAIRLRESSNKIKEIIAISCGNKK---------------CKEILQIAMAMGVDRAILIETDT---ILQSLSVAKL 69 (219)
Q Consensus 8 ~~Ale~A~~l~e~~g~g~~V~av~~G~~~---------------~~~~lr~~~a~GaD~v~~v~~~~---~~d~~~~A~~ 69 (219)
...|+.|.+++++. +....++++-+.. .++-++.+-++|+|.++.++-+. ..+++..
T Consensus 16 ~~ll~~a~~~a~~~--~~~~vvv~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~~l~vd~v~~~~f~~~~~~~s~~~F--- 90 (180)
T cd02064 16 QALIKTLKKIARER--GLPSAVLTFDPHPREVFLPDKAPPRLTTLEEKLELLESLGVDYLLVLPFDKEFASLSAEEF--- 90 (180)
T ss_pred HHHHHHHHHHHHHc--CCCeEEEEECCCHHHHhCCCCCCCcCCCHHHHHHHHHHcCCCEEEEeCCCHHHHcCCHHHH---
Confidence 45788999999875 3566777766421 24456677789999999987432 3455533
Q ss_pred HHHHHHhcCCCEEEEccccc
Q psy9408 70 LQVIVKKENPQLVILGKQSI 89 (219)
Q Consensus 70 la~~ik~~~~dlVl~G~~s~ 89 (219)
+..++.+.+++.|++|.-..
T Consensus 91 i~~il~~~~~~~ivvG~Df~ 110 (180)
T cd02064 91 VEDLLVKLNAKHVVVGFDFR 110 (180)
T ss_pred HHHHHhhcCCeEEEEccCCC
Confidence 33344445899999999775
No 67
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=75.41 E-value=19 Score=30.82 Aligned_cols=71 Identities=17% Similarity=0.195 Sum_probs=40.0
Q ss_pred EEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcC
Q psy9408 26 EIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLN 105 (219)
Q Consensus 26 ~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg 105 (219)
+--+-.-|-+-.....+.+..-|+|++++..|+ .-+++++++.+...|++...-..| -+=-...+.+|+
T Consensus 20 KPLadI~GkpmI~rV~e~a~~s~~~rvvVATDd---------e~I~~av~~~G~~avmT~~~h~SG--TdR~~Ev~~~l~ 88 (247)
T COG1212 20 KPLADIGGKPMIVRVAERALKSGADRVVVATDD---------ERIAEAVQAFGGEAVMTSKDHQSG--TDRLAEVVEKLG 88 (247)
T ss_pred CchhhhCCchHHHHHHHHHHHcCCCeEEEEcCC---------HHHHHHHHHhCCEEEecCCCCCCc--cHHHHHHHHhcC
Confidence 334445565666777888888888888888865 234444455555555554443322 122334444555
Q ss_pred CC
Q psy9408 106 WP 107 (219)
Q Consensus 106 ~p 107 (219)
+|
T Consensus 89 ~~ 90 (247)
T COG1212 89 LP 90 (247)
T ss_pred CC
Confidence 54
No 68
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=75.18 E-value=15 Score=30.15 Aligned_cols=65 Identities=17% Similarity=0.178 Sum_probs=44.7
Q ss_pred HHHHH-HhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCC-CEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 40 ILQIA-MAMGVDRAILIETDTILQSLSVAKLLQVIVKKENP-QLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 40 ~lr~~-~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~-dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
.+++. -..|.+--+... +-..++......+-+++++..+ .++|+|.+- ||-.+.+||++.++|.+
T Consensus 19 ~l~~~~~~~~~~~~~~~p-~l~~~p~~a~~~l~~~i~~~~~~~~~liGSSl----GG~~A~~La~~~~~~av 85 (187)
T PF05728_consen 19 ALKQYFAEHGPDIQYPCP-DLPPFPEEAIAQLEQLIEELKPENVVLIGSSL----GGFYATYLAERYGLPAV 85 (187)
T ss_pred HHHHHHHHhCCCceEECC-CCCcCHHHHHHHHHHHHHhCCCCCeEEEEECh----HHHHHHHHHHHhCCCEE
Confidence 34443 345655433322 2256777777888888888765 488999864 56799999999999863
No 69
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=74.82 E-value=20 Score=33.08 Aligned_cols=32 Identities=22% Similarity=0.291 Sum_probs=24.6
Q ss_pred HHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 69 LLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 69 ~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
.+.+.+++.+||++|.+.. .-.+|.++|+|+.
T Consensus 360 e~~~~i~~~~pDliig~~~---------~~~~a~k~giP~~ 391 (421)
T cd01976 360 ELEEFVKRLKPDLIGSGIK---------EKYVFQKMGIPFR 391 (421)
T ss_pred HHHHHHHHhCCCEEEecCc---------chhhhhhcCCCeE
Confidence 4556778889999995543 4568999999993
No 70
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=74.48 E-value=20 Score=30.42 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=39.7
Q ss_pred HHHHHHHhCCCCEEEEEecCC---CCCHHHHHHHHHHHHHhcCCCEEEEcccc
Q psy9408 39 EILQIAMAMGVDRAILIETDT---ILQSLSVAKLLQVIVKKENPQLVILGKQS 88 (219)
Q Consensus 39 ~~lr~~~a~GaD~v~~v~~~~---~~d~~~~A~~la~~ik~~~~dlVl~G~~s 88 (219)
+..+.+-.+|++..+.++... .++......+|.+++++.+|++|++-.--
T Consensus 67 E~~~a~~~LGv~~~~~l~~~~~~~~~~~~~~~~~L~~ii~~~~P~~V~t~~~~ 119 (237)
T COG2120 67 EARAAARVLGVRETIFLGFPDTGADADPEEITGALVAIIRRLRPDVVFTPYPD 119 (237)
T ss_pred HHHHHHHhcCCCcceecCCCccccccChHHHHHHHHHHHHHhCCCEEEecCCC
Confidence 344556679999888888652 57999999999999999999988875543
No 71
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=74.33 E-value=36 Score=29.73 Aligned_cols=33 Identities=30% Similarity=0.399 Sum_probs=26.7
Q ss_pred HHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCccc
Q psy9408 71 QVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQAT 110 (219)
Q Consensus 71 a~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt 110 (219)
.+++++.+||+|++ +++-.+...|..+|+|++.
T Consensus 86 ~~~l~~~~pDlVi~-------d~~~~~~~aA~~~~iP~i~ 118 (321)
T TIGR00661 86 INIIREYNPDLIIS-------DFEYSTVVAAKLLKIPVIC 118 (321)
T ss_pred HHHHHhcCCCEEEE-------CCchHHHHHHHhcCCCEEE
Confidence 35677789999996 3455789999999999883
No 72
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=73.96 E-value=10 Score=27.98 Aligned_cols=60 Identities=22% Similarity=0.285 Sum_probs=37.7
Q ss_pred HHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy9408 13 SAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVIL 84 (219)
Q Consensus 13 ~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~ 84 (219)
.+.+++...| .+|+++.-. ++-++.+..+|++.++.-++ .+ ..+.+.++....++|+|+=
T Consensus 5 ~a~q~ak~~G--~~vi~~~~~----~~k~~~~~~~Ga~~~~~~~~---~~---~~~~i~~~~~~~~~d~vid 64 (130)
T PF00107_consen 5 MAIQLAKAMG--AKVIATDRS----EEKLELAKELGADHVIDYSD---DD---FVEQIRELTGGRGVDVVID 64 (130)
T ss_dssp HHHHHHHHTT--SEEEEEESS----HHHHHHHHHTTESEEEETTT---SS---HHHHHHHHTTTSSEEEEEE
T ss_pred HHHHHHHHcC--CEEEEEECC----HHHHHHHHhhcccccccccc---cc---cccccccccccccceEEEE
Confidence 3566676654 688877744 23456677889998866442 22 4455555555557898883
No 73
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=73.88 E-value=20 Score=28.79 Aligned_cols=45 Identities=9% Similarity=-0.003 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 61 LQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 61 ~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
.+|..+......+.++.++|.|+.... .+-.++..+|..||.|++
T Consensus 39 ~~p~~~~~l~~~l~~~~~~d~Vvg~~~----gGi~~A~~~a~~l~~p~~ 83 (170)
T PRK13811 39 THPALLKEIAAEVAKRYDFDVVAGVAV----GGVPLAVAVSLAAGKPYA 83 (170)
T ss_pred cCHHHHHHHHHHHHhhCCCCEEEecCc----CcHHHHHHHHHHHCCCEE
Confidence 356655554444445567898865443 457799999999999965
No 74
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=73.76 E-value=58 Score=30.77 Aligned_cols=98 Identities=17% Similarity=0.154 Sum_probs=57.2
Q ss_pred hHHHHHHHHHhhhhcCCCcEEE---EEEecCcc----hHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCC
Q psy9408 7 DEIAIESAIRLRESSNKIKEII---AISCGNKK----CKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENP 79 (219)
Q Consensus 7 D~~Ale~A~~l~e~~g~g~~V~---av~~G~~~----~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~ 79 (219)
|...++.+.+...+.| ..+. +.+..|.. ..+.++++.++|+|.+++.+.-....|..+...+.++-+ .+
T Consensus 130 d~~n~~~ai~~ak~~G--~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~--~~ 205 (468)
T PRK12581 130 DPRNIQQALRAVKKTG--KEAQLCIAYTTSPVHTLNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKA--MT 205 (468)
T ss_pred CHHHHHHHHHHHHHcC--CEEEEEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHh--cc
Confidence 6667777777777664 4432 22223332 346788899999998777664446788888888877743 34
Q ss_pred CEEEEcccccCCCcCcHHHHHH-HHcCCCcc
Q psy9408 80 QLVILGKQSIDSDNNQTGQMLA-ALLNWPQA 109 (219)
Q Consensus 80 dlVl~G~~s~d~~~~~v~~~lA-~~Lg~p~v 109 (219)
++-+ +-.+-+..+-.++-.+| ...|+-.+
T Consensus 206 ~~pi-~~H~Hnt~GlA~An~laAieAGad~v 235 (468)
T PRK12581 206 NLPL-IVHTHATSGISQMTYLAAVEAGADRI 235 (468)
T ss_pred CCeE-EEEeCCCCccHHHHHHHHHHcCCCEE
Confidence 5433 22222333344555553 34444433
No 75
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=73.74 E-value=21 Score=26.62 Aligned_cols=81 Identities=17% Similarity=0.126 Sum_probs=53.1
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEccccc
Q psy9408 10 AIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSI 89 (219)
Q Consensus 10 Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~ 89 (219)
|+...+.+++. |.+.+++---++......+ =+|++|.+.......++...+.|.+++++.+.|.++-|....
T Consensus 14 a~r~~ra~r~~---Gi~tv~v~s~~d~~s~~~~-----~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~~~i~pGyg~l 85 (110)
T PF00289_consen 14 AVRIIRALREL---GIETVAVNSNPDTVSTHVD-----MADEAYFEPPGPSPESYLNIEAIIDIARKEGADAIHPGYGFL 85 (110)
T ss_dssp HHHHHHHHHHT---TSEEEEEEEGGGTTGHHHH-----HSSEEEEEESSSGGGTTTSHHHHHHHHHHTTESEEESTSSTT
T ss_pred HHHHHHHHHHh---CCcceeccCchhccccccc-----ccccceecCcchhhhhhccHHHHhhHhhhhcCcccccccchh
Confidence 66666666654 4677777665542111111 279999999444445666678888889999999999887664
Q ss_pred CCCcCcHHHHHHHH
Q psy9408 90 DSDNNQTGQMLAAL 103 (219)
Q Consensus 90 d~~~~~v~~~lA~~ 103 (219)
. ..+.+|.+
T Consensus 86 s-----e~~~fa~~ 94 (110)
T PF00289_consen 86 S-----ENAEFAEA 94 (110)
T ss_dssp T-----THHHHHHH
T ss_pred H-----HHHHHHHH
Confidence 3 55666654
No 76
>PRK11890 phosphate acetyltransferase; Provisional
Probab=73.37 E-value=15 Score=32.68 Aligned_cols=80 Identities=20% Similarity=0.254 Sum_probs=53.7
Q ss_pred CCCHhhHHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCE-EEEEecCCCCCHHHHHHHHHHHHHhcCCC
Q psy9408 2 SINPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDR-AILIETDTILQSLSVAKLLQVIVKKENPQ 80 (219)
Q Consensus 2 ~iNp~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~-v~~v~~~~~~d~~~~A~~la~~ik~~~~d 80 (219)
+.+|.|...|+++.+..++ | =+..+.+|.+ ++.-+.+-..|.|- -+-+-+. .++..+++.-..+++..+.|
T Consensus 27 va~a~D~~vl~Aa~~a~~~-g---l~~piLvG~~--~~I~~~a~~~g~dl~~~eII~~--~~~~~~a~~av~mV~~G~AD 98 (312)
T PRK11890 27 VAHPCDESSLRGAVEAAQL-G---LITPILVGPR--ARIEAVAAECGLDLSGYEIVDA--PHSHAAAAKAVELVREGEAE 98 (312)
T ss_pred EECCCCHHHHHHHHHHHHc-C---CEEEEEECCH--HHHHHHHHHcCCCcCCCEEECC--CChHHHHHHHHHHHHcCCCC
Confidence 3578899999999988875 2 3567788975 34444566678761 1122211 23344566666788888999
Q ss_pred EEEEccccc
Q psy9408 81 LVILGKQSI 89 (219)
Q Consensus 81 lVl~G~~s~ 89 (219)
.++.|...+
T Consensus 99 ~lmkG~i~T 107 (312)
T PRK11890 99 ALMKGSLHT 107 (312)
T ss_pred EEecCCccc
Confidence 999999764
No 77
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=73.12 E-value=11 Score=33.42 Aligned_cols=77 Identities=14% Similarity=0.165 Sum_probs=47.5
Q ss_pred HHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCC
Q psy9408 13 SAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSD 92 (219)
Q Consensus 13 ~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~ 92 (219)
.|.||+...| ..+++++..+ ++.. .+.+.|+|.++...+ .| +++.+.++....++|+|+-..
T Consensus 158 ~aiQlAk~~G--~~~v~~~~s~---~k~~-~~~~lGAd~vi~y~~---~~---~~~~v~~~t~g~gvDvv~D~v------ 219 (326)
T COG0604 158 AAIQLAKALG--ATVVAVVSSS---EKLE-LLKELGADHVINYRE---ED---FVEQVRELTGGKGVDVVLDTV------ 219 (326)
T ss_pred HHHHHHHHcC--CcEEEEecCH---HHHH-HHHhcCCCEEEcCCc---cc---HHHHHHHHcCCCCceEEEECC------
Confidence 5778888774 3555555443 2333 788889999887442 12 667777777666899999544
Q ss_pred cCcHHHHHHHHcCCC
Q psy9408 93 NNQTGQMLAALLNWP 107 (219)
Q Consensus 93 ~~~v~~~lA~~Lg~p 107 (219)
+++.....-..|..+
T Consensus 220 G~~~~~~~l~~l~~~ 234 (326)
T COG0604 220 GGDTFAASLAALAPG 234 (326)
T ss_pred CHHHHHHHHHHhccC
Confidence 333444444444433
No 78
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=73.11 E-value=53 Score=27.28 Aligned_cols=95 Identities=19% Similarity=0.146 Sum_probs=52.7
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEecC-----cchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy9408 10 AIESAIRLRESSNKIKEIIAISCGN-----KKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVIL 84 (219)
Q Consensus 10 Ale~A~~l~e~~g~g~~V~av~~G~-----~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~ 84 (219)
.+..+.+.+.+. |.+|..-.+-. +...+..+.+..+|+|.+++.+.-....|..+.+.+..+-+..+. +-+
T Consensus 109 ~~~~~v~~ak~~--g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~--~~l 184 (237)
T PF00682_consen 109 RIEEAVKYAKEL--GYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLADTVGIMTPEDVAELVRALREALPD--IPL 184 (237)
T ss_dssp HHHHHHHHHHHT--TSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTT--SEE
T ss_pred HHHHHHHHHHhc--CCceEeCccccccccHHHHHHHHHHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccC--CeE
Confidence 344445555554 35662222111 124456788888999998888765567999999999888877663 334
Q ss_pred cccccCCCcCcHHHHHHH-HcCCCc
Q psy9408 85 GKQSIDSDNNQTGQMLAA-LLNWPQ 108 (219)
Q Consensus 85 G~~s~d~~~~~v~~~lA~-~Lg~p~ 108 (219)
|-..-+..+-.++-.+++ ..|+-.
T Consensus 185 ~~H~Hnd~Gla~An~laA~~aGa~~ 209 (237)
T PF00682_consen 185 GFHAHNDLGLAVANALAALEAGADR 209 (237)
T ss_dssp EEEEBBTTS-HHHHHHHHHHTT-SE
T ss_pred EEEecCCccchhHHHHHHHHcCCCE
Confidence 444434344445555544 344443
No 79
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=72.61 E-value=16 Score=32.57 Aligned_cols=70 Identities=21% Similarity=0.316 Sum_probs=48.8
Q ss_pred hHHHHHHHHhCCCCEEEEEecCC---------CCCHHHHHHHHHHHHHhcC---CCEEEEcccccCCCcCcHHHHHHHHc
Q psy9408 37 CKEILQIAMAMGVDRAILIETDT---------ILQSLSVAKLLQVIVKKEN---PQLVILGKQSIDSDNNQTGQMLAALL 104 (219)
Q Consensus 37 ~~~~lr~~~a~GaD~v~~v~~~~---------~~d~~~~A~~la~~ik~~~---~dlVl~G~~s~d~~~~~v~~~lA~~L 104 (219)
+.-.++.+-++|+|+++.++-.. ..+....+..+++.+++.+ .+.++++- |..+-..+..+|..|
T Consensus 111 ak~~a~ll~~~g~d~vit~D~H~~~~~~~f~~p~~~l~~~p~l~~~i~~~~~~~~~~vvVsP---d~G~~~~A~~lA~~l 187 (320)
T PRK02269 111 SKLVANMLEVAGVDRLLTVDLHAAQIQGFFDIPVDHLMGAPLIADYFDRRGLVGDDVVVVSP---DHGGVTRARKLAQFL 187 (320)
T ss_pred HHHHHHHHhhcCCCEEEEECCChHHHhccccCCchhhhhHHHHHHHHHHhCCCCCCcEEEEE---CccHHHHHHHHHHHh
Confidence 34445555577999999998532 1244566678888887654 35566654 346678999999999
Q ss_pred CCCcc
Q psy9408 105 NWPQA 109 (219)
Q Consensus 105 g~p~v 109 (219)
|+|+.
T Consensus 188 g~~~~ 192 (320)
T PRK02269 188 KTPIA 192 (320)
T ss_pred CCCEE
Confidence 99975
No 80
>PRK13671 hypothetical protein; Provisional
Probab=72.14 E-value=34 Score=30.29 Aligned_cols=86 Identities=26% Similarity=0.290 Sum_probs=57.3
Q ss_pred CHhhHHHHHHHHHhhhhcCCCcEEEEEEecCc---------chHHHHHHHHhCCCCEEEEEecC-CCCCHHHHHHHHHHH
Q psy9408 4 NPFDEIAIESAIRLRESSNKIKEIIAISCGNK---------KCKEILQIAMAMGVDRAILIETD-TILQSLSVAKLLQVI 73 (219)
Q Consensus 4 Np~D~~Ale~A~~l~e~~g~g~~V~av~~G~~---------~~~~~lr~~~a~GaD~v~~v~~~-~~~d~~~~A~~la~~ 73 (219)
||+-.-=+..+.+.++.++ ...|+++--|.. +...=++.+...|+|=|+-+... ....++..|..--.+
T Consensus 10 NP~H~GHl~~~~~a~~~~~-~d~vi~vpSg~~~qrg~pa~~~~~~R~~ma~~~G~DLViELP~~~a~~sAe~FA~gaV~l 88 (298)
T PRK13671 10 NPFHNGHIYQINYIKNKFP-NEKIIVILSGKYTQRGEIAVASFEKRKKIALKYGVDKVIKLPFEYATQAAHIFAKGAIKK 88 (298)
T ss_pred CCccHHHHHHHHHHHHhcC-CCEEEEEECcCCCCCCCCCCCCHHHHHHHHHHcCCCEEEeccHHHHhhchHHHHHHHHHH
Confidence 6665555566666677654 346777665543 12344678888999988766532 123455666666677
Q ss_pred HHhcCCCEEEEcccccC
Q psy9408 74 VKKENPQLVILGKQSID 90 (219)
Q Consensus 74 ik~~~~dlVl~G~~s~d 90 (219)
+.+.+.|.+.+|..+.|
T Consensus 89 L~~lgvd~l~FGsE~~d 105 (298)
T PRK13671 89 LNKEKIDKLIFGSESND 105 (298)
T ss_pred HHHcCCCEEEECCCCCC
Confidence 88888999999999855
No 81
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=70.61 E-value=7 Score=32.19 Aligned_cols=45 Identities=16% Similarity=0.113 Sum_probs=32.3
Q ss_pred CCHH---HHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 61 LQSL---SVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 61 ~d~~---~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
.||+ .++..+++.++..++|.|++-.+ .+--+|..+|..||.|++
T Consensus 30 ~~P~~l~~i~~~la~~~~~~~~D~Ivg~e~----~GiplA~~lA~~Lg~p~v 77 (189)
T PRK09219 30 VDPKLMNEIGKEFARRFKDEGITKILTIEA----SGIAPAVMAALALGVPVV 77 (189)
T ss_pred cCHHHHHHHHHHHHHHhccCCCCEEEEEcc----ccHHHHHHHHHHHCCCEE
Confidence 4554 45556666666668999876444 346799999999999986
No 82
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=70.37 E-value=39 Score=31.13 Aligned_cols=32 Identities=13% Similarity=0.108 Sum_probs=23.2
Q ss_pred HHHHHHHhcC----CCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 69 LLQVIVKKEN----PQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 69 ~la~~ik~~~----~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
-+.+.+++.+ ||+||.+. ..-.+|.+||+|++
T Consensus 358 ~~~~~i~~~~~~~~~dliig~s---------~~~~~a~~~~ip~i 393 (427)
T cd01971 358 AIGQSLRQSDFKYKPPIIFGSS---------WERDLAKELGGKIL 393 (427)
T ss_pred HHHHHHHhCCCCCCCCEEEech---------HHHHHHHHcCCCeE
Confidence 4555666654 99998443 56678999999986
No 83
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=70.16 E-value=69 Score=30.21 Aligned_cols=98 Identities=15% Similarity=0.125 Sum_probs=59.1
Q ss_pred hHHHHHHHHHhhhhcCCCcEEE---EEEecCc----chHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCC
Q psy9408 7 DEIAIESAIRLRESSNKIKEII---AISCGNK----KCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENP 79 (219)
Q Consensus 7 D~~Ale~A~~l~e~~g~g~~V~---av~~G~~----~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~ 79 (219)
|...+..+.+.+.+.| .+|. +.+++|. ...+.++++.++|+|++.+.+.-....|..+...+..+-++.+.
T Consensus 120 d~~n~~~~i~~ak~~G--~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~v 197 (467)
T PRK14041 120 DIRNLEKSIEVAKKHG--AHVQGAISYTVSPVHTLEYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKKFGV 197 (467)
T ss_pred HHHHHHHHHHHHHHCC--CEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhcCC
Confidence 3455667777777664 4554 2234542 24456788999999987776644467899888888877666553
Q ss_pred CEEEEcccccCCCcCcHHHHHHH-HcCCCcc
Q psy9408 80 QLVILGKQSIDSDNNQTGQMLAA-LLNWPQA 109 (219)
Q Consensus 80 dlVl~G~~s~d~~~~~v~~~lA~-~Lg~p~v 109 (219)
.+=+=.+ +..|-.++-.+|+ ..|+-.+
T Consensus 198 pI~~H~H---nt~GlA~AN~laAieaGad~v 225 (467)
T PRK14041 198 PVEVHSH---CTTGLASLAYLAAVEAGADMF 225 (467)
T ss_pred ceEEEec---CCCCcHHHHHHHHHHhCCCEE
Confidence 3333333 3344456666644 4554443
No 84
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=70.01 E-value=28 Score=31.03 Aligned_cols=116 Identities=9% Similarity=0.008 Sum_probs=69.3
Q ss_pred CCCCHhhHHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCC-CCCHHH---HHHH-------
Q psy9408 1 MSINPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDT-ILQSLS---VAKL------- 69 (219)
Q Consensus 1 ~~iNp~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~-~~d~~~---~A~~------- 69 (219)
|.|+-.+..++++|++.....|..++.+.=|+..+.-++.+.-+..||+.-++.+.-+. ..+++. .+.-
T Consensus 99 l~IDSt~p~a~eaaLk~~~e~G~~gR~IiNSIn~e~~~eel~llk~yg~aavIvLa~d~~~pt~e~Rl~i~~~~~~~~~~ 178 (308)
T PRK00979 99 FLIDSTSPEARIAAAKYATELGLADRAIYNSINPSIEEEEIEALKESDIKAAIVLAFDPMDPSVEGRLKMLEEGGKGQDK 178 (308)
T ss_pred EEEeCCCHHHHHHHHHHhhhcCCCCceEEEeccCCCCHHHHHHHHHhCCceEEEEEcCCCCCCHHHHHHHHHhccccchH
Confidence 35778899999999999876432346665566654434568888899988777665443 334443 3332
Q ss_pred -HHHHHHhcCC-----CEEEEcccccCCCcCcHHHHHHHHcCCCcccceeEEEE
Q psy9408 70 -LQVIVKKENP-----QLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIVL 117 (219)
Q Consensus 70 -la~~ik~~~~-----dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~ 117 (219)
|-+.+++.+. |..++.-++ .+.+-..--.+-+++|+|....+.++..
T Consensus 179 gll~~a~~~GI~diliDplVlpvs~-~~~tl~aI~~iK~~~G~pt~~GlSNiS~ 231 (308)
T PRK00979 179 GMLPLAEEAGIERPLVDTAVTPLPG-SGAAIRAIFAVKAKFGYPVGCAPHNAPS 231 (308)
T ss_pred HHHHHHHHcCCCcEEeccCCCcCcc-HHHHHHHHHHHHHHcCCCeEEEEeCCch
Confidence 3344455553 333333322 2222233344556788888888888754
No 85
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=69.92 E-value=75 Score=27.68 Aligned_cols=64 Identities=19% Similarity=0.248 Sum_probs=40.6
Q ss_pred hHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHH
Q psy9408 37 CKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAA 102 (219)
Q Consensus 37 ~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~ 102 (219)
..+.++.+..+|+|++.+.+.-...+|..+.+.+..+.+.. |++-|- -..-+..+-.++-.+|+
T Consensus 149 ~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~~-~~~~i~-~H~Hnd~Gla~AN~laA 212 (280)
T cd07945 149 VFQLVDFLSDLPIKRIMLPDTLGILSPFETYTYISDMVKRY-PNLHFD-FHAHNDYDLAVANVLAA 212 (280)
T ss_pred HHHHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHhhC-CCCeEE-EEeCCCCCHHHHHHHHH
Confidence 45677889999999988766544679999888888876654 343332 22222233445555544
No 86
>PRK07904 short chain dehydrogenase; Provisional
Probab=69.78 E-value=56 Score=27.32 Aligned_cols=74 Identities=12% Similarity=0.144 Sum_probs=44.5
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEecCcc-hHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcc
Q psy9408 10 AIESAIRLRESSNKIKEIIAISCGNKK-CKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGK 86 (219)
Q Consensus 10 Ale~A~~l~e~~g~g~~V~av~~G~~~-~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~ 86 (219)
..+.|+++.++ | |.+|+++.-.+.. .++..+++...|.+++..+..| -.|...+.+.+.++.+..+.|+++.+.
T Consensus 21 G~~la~~l~~~-g-g~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D-~~~~~~~~~~~~~~~~~g~id~li~~a 95 (253)
T PRK07904 21 GLAICERYLKN-A-PARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFD-ALDTDSHPKVIDAAFAGGDVDVAIVAF 95 (253)
T ss_pred HHHHHHHHHhc-C-CCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEec-CCChHHHHHHHHHHHhcCCCCEEEEee
Confidence 34566777665 2 3577766544432 4455566666676666666544 346666666666666544689888654
No 87
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=68.85 E-value=35 Score=29.90 Aligned_cols=92 Identities=17% Similarity=0.153 Sum_probs=52.1
Q ss_pred HHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCC--CCC----------HHHHHHHHHHHHHh
Q psy9408 9 IAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDT--ILQ----------SLSVAKLLQVIVKK 76 (219)
Q Consensus 9 ~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~--~~d----------~~~~A~~la~~ik~ 76 (219)
.+++.|..|.++ |.+|++++.+.....+.++ ..|++ ++.+.... ... .......+.+++++
T Consensus 17 ~~~~la~~L~~~---g~ev~vv~~~~~~~~~~~~---~~g~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ik~ 89 (357)
T PRK00726 17 PALALAEELKKR---GWEVLYLGTARGMEARLVP---KAGIE-FHFIPSGGLRRKGSLANLKAPFKLLKGVLQARKILKR 89 (357)
T ss_pred HHHHHHHHHHhC---CCEEEEEECCCchhhhccc---cCCCc-EEEEeccCcCCCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356777778765 4789888765421111111 14765 45554321 111 13334455677888
Q ss_pred cCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccc
Q psy9408 77 ENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATF 111 (219)
Q Consensus 77 ~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~ 111 (219)
.+||+|++-... ..-.+...+...+.|++..
T Consensus 90 ~~pDvv~~~~~~----~~~~~~~~~~~~~~p~v~~ 120 (357)
T PRK00726 90 FKPDVVVGFGGY----VSGPGGLAARLLGIPLVIH 120 (357)
T ss_pred cCCCEEEECCCc----chhHHHHHHHHcCCCEEEE
Confidence 899999987532 1223344456678888754
No 88
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=68.48 E-value=73 Score=28.83 Aligned_cols=93 Identities=12% Similarity=0.039 Sum_probs=56.0
Q ss_pred HhhHHHHH---HHHHhhhhcCCCcEEE---EEEecCc--------chHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHH
Q psy9408 5 PFDEIAIE---SAIRLRESSNKIKEII---AISCGNK--------KCKEILQIAMAMGVDRAILIETDTILQSLSVAKLL 70 (219)
Q Consensus 5 p~D~~Ale---~A~~l~e~~g~g~~V~---av~~G~~--------~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~l 70 (219)
-.-+++++ ...+++.+. |.+|. ...+|.+ ...+..+.+..+|+|++.+.+.-...+|..+.+.+
T Consensus 155 ~t~~e~l~~~~~~v~~Ak~~--Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv 232 (347)
T PLN02746 155 CSIEESLVRYREVALAAKKH--SIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPML 232 (347)
T ss_pred CCHHHHHHHHHHHHHHHHHc--CCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHH
Confidence 33455555 455555554 45663 2345522 14466788999999998876644467999999988
Q ss_pred HHHHHhcCC-CEEEEcccccCCCcCcHHHHHHH
Q psy9408 71 QVIVKKENP-QLVILGKQSIDSDNNQTGQMLAA 102 (219)
Q Consensus 71 a~~ik~~~~-dlVl~G~~s~d~~~~~v~~~lA~ 102 (219)
..+.+..+. .+=+=++.. .+-.++-.+|+
T Consensus 233 ~~l~~~~~~~~i~~H~Hnd---~GlA~AN~lAA 262 (347)
T PLN02746 233 EAVMAVVPVDKLAVHFHDT---YGQALANILVS 262 (347)
T ss_pred HHHHHhCCCCeEEEEECCC---CChHHHHHHHH
Confidence 888776542 243433333 33445555544
No 89
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=68.45 E-value=19 Score=32.57 Aligned_cols=38 Identities=26% Similarity=0.363 Sum_probs=23.4
Q ss_pred HHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEe
Q psy9408 13 SAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIE 56 (219)
Q Consensus 13 ~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~ 56 (219)
.|.|++..+ |.+|+|++.+++ -++.+..+|||.++.-.
T Consensus 181 ~avQ~Aka~--ga~Via~~~~~~----K~e~a~~lGAd~~i~~~ 218 (339)
T COG1064 181 MAVQYAKAM--GAEVIAITRSEE----KLELAKKLGADHVINSS 218 (339)
T ss_pred HHHHHHHHc--CCeEEEEeCChH----HHHHHHHhCCcEEEEcC
Confidence 455666655 367777777643 24445566777776644
No 90
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=68.35 E-value=89 Score=27.97 Aligned_cols=90 Identities=12% Similarity=0.138 Sum_probs=54.4
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEecCc-----chHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy9408 10 AIESAIRLRESSNKIKEIIAISCGNK-----KCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVIL 84 (219)
Q Consensus 10 Ale~A~~l~e~~g~g~~V~av~~G~~-----~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~ 84 (219)
.+....+.+.+. |.+|.+..+-.. ...+.++.+..+|+|.+++.+.-....|+.+.+.+..+-+..++++-+
T Consensus 115 ~~~~~i~~ak~~--G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~i- 191 (333)
T TIGR03217 115 VSEQHIGMAREL--GMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIVDSAGAMLPDDVRDRVRALKAVLKPETQV- 191 (333)
T ss_pred HHHHHHHHHHHc--CCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCCceE-
Confidence 345555555554 356654443322 234566788899999988877555679999999888887777766322
Q ss_pred cccccCCCcCcHHHHHHH
Q psy9408 85 GKQSIDSDNNQTGQMLAA 102 (219)
Q Consensus 85 G~~s~d~~~~~v~~~lA~ 102 (219)
|-..-+..+-.++--+++
T Consensus 192 g~H~HnnlGla~ANslaA 209 (333)
T TIGR03217 192 GFHAHHNLSLAVANSIAA 209 (333)
T ss_pred EEEeCCCCchHHHHHHHH
Confidence 333322233335554544
No 91
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=68.19 E-value=24 Score=27.90 Aligned_cols=79 Identities=24% Similarity=0.291 Sum_probs=51.9
Q ss_pred HhhHHHHHHHHHhhhhcCC---CcE-EEEEEecCcchHHHHHHHHhCCCCEEEEEecCC---CCCHHHHHHHHHHHHHhc
Q psy9408 5 PFDEIAIESAIRLRESSNK---IKE-IIAISCGNKKCKEILQIAMAMGVDRAILIETDT---ILQSLSVAKLLQVIVKKE 77 (219)
Q Consensus 5 p~D~~Ale~A~~l~e~~g~---g~~-V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~---~~d~~~~A~~la~~ik~~ 77 (219)
|.-.+.-+.+.+|++.++. ... -.+.-.|++..++.++++.+.|+++++++.--. ...+-.+-+.+.+.+++.
T Consensus 65 PL~~~t~~q~~~l~~~L~~~~~~~~v~~amry~~P~i~~~l~~l~~~g~~~iivlPl~P~~S~~Tt~s~~~~~~~~~~~~ 144 (159)
T cd03411 65 PLNEITRAQAEALEKALDERGIDVKVYLAMRYGPPSIEEALEELKADGVDRIVVLPLYPQYSASTTGSYLDEVERALKKL 144 (159)
T ss_pred ccHHHHHHHHHHHHHHHhccCCCcEEEehHhcCCCCHHHHHHHHHHcCCCEEEEEECCcccccccHHHHHHHHHHHHHhc
Confidence 4445556666667766531 122 345668888899999999999999999998532 335555666666666654
Q ss_pred --CCCEEE
Q psy9408 78 --NPQLVI 83 (219)
Q Consensus 78 --~~dlVl 83 (219)
.+++-+
T Consensus 145 ~~~~~~~~ 152 (159)
T cd03411 145 RPAPELRV 152 (159)
T ss_pred CCCCcEEE
Confidence 244444
No 92
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=68.00 E-value=15 Score=32.45 Aligned_cols=70 Identities=19% Similarity=0.319 Sum_probs=46.3
Q ss_pred hHHHHHHHHhCCCCEEEEEecCC-----CC----CHHHHHHHHHHHHHhc-CCCEEEEcccccCCCcCcHHHHHHHHcCC
Q psy9408 37 CKEILQIAMAMGVDRAILIETDT-----IL----QSLSVAKLLQVIVKKE-NPQLVILGKQSIDSDNNQTGQMLAALLNW 106 (219)
Q Consensus 37 ~~~~lr~~~a~GaD~v~~v~~~~-----~~----d~~~~A~~la~~ik~~-~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~ 106 (219)
+.-.++.+-++|+|+++.++-.. .+ +....+..|++.+++. ..+.++.|-. ..+-..+..+|..||.
T Consensus 107 ~~~~a~ll~~~g~d~vit~DlHs~~~~~~f~ip~~~l~a~~~l~~~i~~~~~~~~viv~pd---~g~~~~A~~lA~~Lg~ 183 (308)
T TIGR01251 107 AKLVANLLETAGADRVLTVDLHSPQIQGFFDVPVDNLYASPVLAEYLKKKILDNPVVVSPD---AGGVERAKKVADALGC 183 (308)
T ss_pred HHHHHHHHHHcCCCEEEEecCChHHhcCcCCCceecccCHHHHHHHHHhhCCCCCEEEEEC---CchHHHHHHHHHHhCC
Confidence 34455556678999999998532 11 2344456777777654 2355555543 3556799999999999
Q ss_pred Ccc
Q psy9408 107 PQA 109 (219)
Q Consensus 107 p~v 109 (219)
|+.
T Consensus 184 ~~~ 186 (308)
T TIGR01251 184 PLA 186 (308)
T ss_pred CEE
Confidence 874
No 93
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=67.66 E-value=44 Score=28.43 Aligned_cols=84 Identities=15% Similarity=0.212 Sum_probs=52.1
Q ss_pred cEEEEEEecCcchHHHHHHHH-hCCCCEEEE--EecCC----CCC-HH----HHHHHHHHHHHhcCCCEEEEcccccCCC
Q psy9408 25 KEIIAISCGNKKCKEILQIAM-AMGVDRAIL--IETDT----ILQ-SL----SVAKLLQVIVKKENPQLVILGKQSIDSD 92 (219)
Q Consensus 25 ~~V~av~~G~~~~~~~lr~~~-a~GaD~v~~--v~~~~----~~d-~~----~~A~~la~~ik~~~~dlVl~G~~s~d~~ 92 (219)
-++.+++--+. ....+.+.+ .||..+-+. .+.|- ..+ ++ ......++.+++.+.|.|++|..-.
T Consensus 110 rrfsViTtt~r-s~~il~~lv~~~g~s~~~~~vrstdl~vL~l~~~~~~~~~~l~~~~~~a~~edgAeaIiLGCAGm--- 185 (230)
T COG4126 110 RRFSVITTTER-SRPILEELVRSYGLSRHCRSVRSTDLPVLALEGPPEEAEALLVIEAAEALKEDGAEAIILGCAGM--- 185 (230)
T ss_pred ceEEEEecCcc-cHHHHHHHHHhcCccccccceeeCCCCcccccCChHHHHHHHHHHHHHHhhhcCCCEEEEcCccH---
Confidence 45666666554 455666544 577655433 22221 112 22 2223344566777899999999864
Q ss_pred cCcHHHHHHHHcCCCccccee
Q psy9408 93 NNQTGQMLAALLNWPQATFAS 113 (219)
Q Consensus 93 ~~~v~~~lA~~Lg~p~vt~v~ 113 (219)
..++.+|....|+|.+-.|.
T Consensus 186 -s~la~~Lq~~~gvPVIDgv~ 205 (230)
T COG4126 186 -SDLADQLQKAFGVPVIDGVA 205 (230)
T ss_pred -HHHHHHHHHHhCCCcccchH
Confidence 45899999999999986554
No 94
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=67.19 E-value=64 Score=31.37 Aligned_cols=90 Identities=16% Similarity=0.190 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhhhcCCCcEEE-EE--EecC----cchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCC
Q psy9408 8 EIAIESAIRLRESSNKIKEII-AI--SCGN----KKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQ 80 (219)
Q Consensus 8 ~~Ale~A~~l~e~~g~g~~V~-av--~~G~----~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~d 80 (219)
...+..+.+.+.+.| ..|. ++ +.+| ....+.++++..+|+|.+++.+.-....|..+...+.++-++.+
T Consensus 122 ~~n~~~~i~~ak~~G--~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~-- 197 (592)
T PRK09282 122 VRNMEVAIKAAKKAG--AHVQGTISYTTSPVHTIEKYVELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEVD-- 197 (592)
T ss_pred HHHHHHHHHHHHHcC--CEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhCC--
Confidence 345566666666654 4443 33 3343 23456788899999998777654446789988888887766554
Q ss_pred EEEEcccccCCCcCcHHHHHHH
Q psy9408 81 LVILGKQSIDSDNNQTGQMLAA 102 (219)
Q Consensus 81 lVl~G~~s~d~~~~~v~~~lA~ 102 (219)
+-+|-.+-+..+-.++-.+|+
T Consensus 198 -~pi~~H~Hnt~Gla~An~laA 218 (592)
T PRK09282 198 -LPVQLHSHCTSGLAPMTYLKA 218 (592)
T ss_pred -CeEEEEEcCCCCcHHHHHHHH
Confidence 223444444445556666654
No 95
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=67.15 E-value=75 Score=26.61 Aligned_cols=68 Identities=18% Similarity=0.127 Sum_probs=43.8
Q ss_pred HHHHHHHHhhhhcCCCcEEEEEE--ecC-----cchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcC
Q psy9408 9 IAIESAIRLRESSNKIKEIIAIS--CGN-----KKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKEN 78 (219)
Q Consensus 9 ~Ale~A~~l~e~~g~g~~V~av~--~G~-----~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~ 78 (219)
..+..+.+.+.+.| .++..-. +.. ....+.++.+..+|+|.+++.+.-....|+.+.+.+..+.+..+
T Consensus 115 ~~~~~~i~~a~~~G--~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~ 189 (265)
T cd03174 115 ENAEEAIEAAKEAG--LEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALREALP 189 (265)
T ss_pred HHHHHHHHHHHHCC--CeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHhCC
Confidence 33444444555443 5554433 222 12356788899999999998765446789999888888776554
No 96
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=67.03 E-value=63 Score=27.44 Aligned_cols=91 Identities=9% Similarity=-0.003 Sum_probs=54.2
Q ss_pred HhhHHHHHHHHHhhhhcCCCcEEEEEEec--CcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcC-CCE
Q psy9408 5 PFDEIAIESAIRLRESSNKIKEIIAISCG--NKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKEN-PQL 81 (219)
Q Consensus 5 p~D~~Ale~A~~l~e~~g~g~~V~av~~G--~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~-~dl 81 (219)
+|...+.+-..+++++. |.++.-+--. +...++.++.+.+.|+|=++... ..+..++.++++++. ...
T Consensus 14 ~~n~~~~~G~~~~~~~~--gv~~~~~e~~~~~~~~~~~i~~~~~~g~dlIi~~g-------~~~~~~~~~vA~~~p~~~F 84 (258)
T cd06353 14 GWNYAHDEGRKAAEKAL--GVEVTYVENVPEGADAERVLRELAAQGYDLIFGTS-------FGFMDAALKVAKEYPDVKF 84 (258)
T ss_pred chhHHHHHHHHHHHHhc--CCeEEEEecCCchHhHHHHHHHHHHcCCCEEEECc-------hhhhHHHHHHHHHCCCCEE
Confidence 46666677777777765 4566554444 23357788999999999777733 345566677776653 334
Q ss_pred EEEccccc----------CCCcCcHHHHHHHHc
Q psy9408 82 VILGKQSI----------DSDNNQTGQMLAALL 104 (219)
Q Consensus 82 Vl~G~~s~----------d~~~~~v~~~lA~~L 104 (219)
+++..... ...++.+++.+|+++
T Consensus 85 ~~~d~~~~~~Nv~~~~~~~~e~~ylaG~~Aa~~ 117 (258)
T cd06353 85 EHCSGYKTAPNVGSYFARIYEGRYLAGVVAGKM 117 (258)
T ss_pred EECCCCCCCCCeeeEechhhHHHHHHHHHHHHh
Confidence 44433221 112345777777665
No 97
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=66.97 E-value=84 Score=27.96 Aligned_cols=89 Identities=18% Similarity=0.143 Sum_probs=61.1
Q ss_pred EEecCc-chHHHHHHHHhCCCC-EEEEEecCCCCCHHHHHHHHHHHHHh-------------cCCCEEEEcccccCCCcC
Q psy9408 30 ISCGNK-KCKEILQIAMAMGVD-RAILIETDTILQSLSVAKLLQVIVKK-------------ENPQLVILGKQSIDSDNN 94 (219)
Q Consensus 30 v~~G~~-~~~~~lr~~~a~GaD-~v~~v~~~~~~d~~~~A~~la~~ik~-------------~~~dlVl~G~~s~d~~~~ 94 (219)
++.+.. .+.+.++.+...|-+ ++|+.+.-..+.....|+.|++.--. ...|.||+|..++..+|.
T Consensus 124 lTh~~S~~v~~~l~~A~~~~k~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~Dsa~~~~~~~vd~VivGad~I~~nG~ 203 (301)
T COG1184 124 LTHSFSKTVLEVLKTAADRGKRFKVIVTESRPRGEGRIMAKELRQSGIPVTVIVDSAVGAFMSRVDKVLVGADAILANGA 203 (301)
T ss_pred EEecCcHHHHHHHHHhhhcCCceEEEEEcCCCcchHHHHHHHHHHcCCceEEEechHHHHHHHhCCEEEECccceecCCc
Confidence 344433 357778888887765 45555543356677777777765211 157999999999888743
Q ss_pred -------cHHHHHHHHcCCCcccceeEEEEe
Q psy9408 95 -------QTGQMLAALLNWPQATFASKIVLK 118 (219)
Q Consensus 95 -------~v~~~lA~~Lg~p~vt~v~~l~~~ 118 (219)
..=+..|..++.|++.-+.+.++.
T Consensus 204 lvnkiGT~~lA~~A~e~~~Pf~v~aesyKf~ 234 (301)
T COG1184 204 LVNKIGTSPLALAARELRVPFYVVAESYKFV 234 (301)
T ss_pred EEeccchHHHHHHHHHhCCCEEEEeeeeccc
Confidence 345778999999999877777655
No 98
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=66.93 E-value=30 Score=30.66 Aligned_cols=77 Identities=14% Similarity=0.193 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhhhcCCCcEEEEEEecCcc---------------hHHHHHHHHhCCCCEEEEEecCC---CCCHHHHHHH
Q psy9408 8 EIAIESAIRLRESSNKIKEIIAISCGNKK---------------CKEILQIAMAMGVDRAILIETDT---ILQSLSVAKL 69 (219)
Q Consensus 8 ~~Ale~A~~l~e~~g~g~~V~av~~G~~~---------------~~~~lr~~~a~GaD~v~~v~~~~---~~d~~~~A~~ 69 (219)
...|+.|++++++. +...+++++-+.. .++-+..+-++|+|.++.++-+. ..+++..-+
T Consensus 30 q~Ll~~a~~~a~~~--~~~~~vitFd~~p~~~~~~~~~~~~l~t~eeR~~~l~~~gVD~~~~~~F~~~~~~ls~e~Fi~- 106 (305)
T PRK05627 30 QALLARAREIARER--GLPSVVMTFEPHPREVFAPDKAPARLTPLRDKAELLAELGVDYVLVLPFDEEFAKLSAEEFIE- 106 (305)
T ss_pred HHHHHHHHHHHHhc--CCCEEEEEecCCHHHHcCCCCCCcCCCCHHHHHHHHHHcCCCEEEEecCCHHHhcCCHHHHHH-
Confidence 46789999999876 3567777765421 24445667789999999987542 445664433
Q ss_pred HHHH-HHhcCCCEEEEccccc
Q psy9408 70 LQVI-VKKENPQLVILGKQSI 89 (219)
Q Consensus 70 la~~-ik~~~~dlVl~G~~s~ 89 (219)
.+ +++.+++.|++|.-..
T Consensus 107 --~~l~~~l~~~~iVvG~Df~ 125 (305)
T PRK05627 107 --DLLVKGLNAKHVVVGFDFR 125 (305)
T ss_pred --HHHHhccCCCEEEECCCCC
Confidence 32 4557899999998764
No 99
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=66.92 E-value=83 Score=27.09 Aligned_cols=47 Identities=6% Similarity=0.205 Sum_probs=34.8
Q ss_pred hHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy9408 37 CKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVI 83 (219)
Q Consensus 37 ~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl 83 (219)
..+.++.+..+|+|++++.+.-....|+.+...+..+-+..++++-+
T Consensus 140 ~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~i 186 (266)
T cd07944 140 LLELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSNLDKDIKL 186 (266)
T ss_pred HHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceE
Confidence 44567788889999988877544679999988888887666644433
No 100
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=66.45 E-value=42 Score=23.64 Aligned_cols=52 Identities=17% Similarity=0.215 Sum_probs=37.9
Q ss_pred HhhHHHHHHHHHhhhhcCCCcEEE-EEEec-CcchHHHHHHHHhCCCCEEEEEec
Q psy9408 5 PFDEIAIESAIRLRESSNKIKEII-AISCG-NKKCKEILQIAMAMGVDRAILIET 57 (219)
Q Consensus 5 p~D~~Ale~A~~l~e~~g~g~~V~-av~~G-~~~~~~~lr~~~a~GaD~v~~v~~ 57 (219)
|+....-..+.+|+++.+ ...|. +..-. .+..++.++++.+.|.++++++.-
T Consensus 14 ~~~~~~~~~~~~l~~~~~-~~~v~~a~~~~~~P~i~~~l~~l~~~g~~~vvvvPl 67 (101)
T cd03409 14 PYKKDIEAQAHNLAESLP-DFPYYVGFQSGLGPDTEEAIRELAEEGYQRVVIVPL 67 (101)
T ss_pred cHHHHHHHHHHHHHHHCC-CCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeC
Confidence 666777778888888752 23443 33333 466889999999999999999874
No 101
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=66.18 E-value=25 Score=27.20 Aligned_cols=75 Identities=12% Similarity=0.228 Sum_probs=47.0
Q ss_pred HHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCH--------------HHHHHHHHHHH
Q psy9408 9 IAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQS--------------LSVAKLLQVIV 74 (219)
Q Consensus 9 ~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~--------------~~~A~~la~~i 74 (219)
++|.-.++..++ .+|.+++.|. +.+...+.+..+....+++-+.. .+.. ..-.+.|.+++
T Consensus 13 qtLdVi~~~~d~----f~v~~Lsa~~-n~~~L~~q~~~f~p~~v~i~~~~-~~~~l~~~~~~~~~~~~v~~G~~~l~~~~ 86 (129)
T PF02670_consen 13 QTLDVIRKHPDK----FEVVALSAGS-NIEKLAEQAREFKPKYVVIADEE-AYEELKKALPSKGPGIEVLSGPEGLEELA 86 (129)
T ss_dssp HHHHHHHHCTTT----EEEEEEEESS-THHHHHHHHHHHT-SEEEESSHH-HHHHHHHHHHHTTSSSEEEESHHHHHHHH
T ss_pred HHHHHHHhCCCc----eEEEEEEcCC-CHHHHHHHHHHhCCCEEEEcCHH-HHHHHHHHhhhcCCCCEEEeChHHHHHHh
Confidence 455555555554 5899999986 47888888999988877764421 1110 01135577788
Q ss_pred HhcCCCEEEEccccc
Q psy9408 75 KKENPQLVILGKQSI 89 (219)
Q Consensus 75 k~~~~dlVl~G~~s~ 89 (219)
...++|+|+.+-.-.
T Consensus 87 ~~~~~D~vv~Ai~G~ 101 (129)
T PF02670_consen 87 EEPEVDIVVNAIVGF 101 (129)
T ss_dssp THTT-SEEEE--SSG
T ss_pred cCCCCCEEEEeCccc
Confidence 778999999987653
No 102
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=66.13 E-value=23 Score=25.44 Aligned_cols=76 Identities=16% Similarity=0.076 Sum_probs=41.7
Q ss_pred EEEecC--cchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCC
Q psy9408 29 AISCGN--KKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNW 106 (219)
Q Consensus 29 av~~G~--~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~ 106 (219)
++.+|+ ......-+.+-.+|....++ ..+...... ...|.+.++ ++|+|++--...+=+.-.-.-..|.+.|.
T Consensus 2 vliVGG~~~~~~~~~~~~~~~G~~~~~h-g~~~~~~~~--~~~l~~~i~--~aD~VIv~t~~vsH~~~~~vk~~akk~~i 76 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILEKYGGKLIHH-GRDGGDEKK--ASRLPSKIK--KADLVIVFTDYVSHNAMWKVKKAAKKYGI 76 (97)
T ss_pred EEEEcCCcccHHHHHHHHHHcCCEEEEE-ecCCCCccc--hhHHHHhcC--CCCEEEEEeCCcChHHHHHHHHHHHHcCC
Confidence 456776 33333444455688888777 322222211 122444443 57777766555544445566677777788
Q ss_pred Ccc
Q psy9408 107 PQA 109 (219)
Q Consensus 107 p~v 109 (219)
|++
T Consensus 77 p~~ 79 (97)
T PF10087_consen 77 PII 79 (97)
T ss_pred cEE
Confidence 765
No 103
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=65.82 E-value=53 Score=31.75 Aligned_cols=78 Identities=17% Similarity=0.233 Sum_probs=55.3
Q ss_pred EEEEEEecCcc----hHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHH
Q psy9408 26 EIIAISCGNKK----CKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLA 101 (219)
Q Consensus 26 ~V~av~~G~~~----~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA 101 (219)
..++|.||+.+ +++..+.+-.+|.+--+.+.. ..-.+..+.+.+.+ .++.+.++|+++.. -.+++|+.+|
T Consensus 411 ~~v~i~~gs~sd~~~~~~~~~~l~~~g~~~~~~v~s-ahr~~~~~~~~~~~-~~~~~~~v~i~~ag----~~~~l~~~~a 484 (577)
T PLN02948 411 PLVGIIMGSDSDLPTMKDAAEILDSFGVPYEVTIVS-AHRTPERMFSYARS-AHSRGLQVIIAGAG----GAAHLPGMVA 484 (577)
T ss_pred CeEEEEECchhhHHHHHHHHHHHHHcCCCeEEEEEC-CccCHHHHHHHHHH-HHHCCCCEEEEEcC----ccccchHHHh
Confidence 34778888865 445566677899988777773 34555554444333 34457889998874 4588999999
Q ss_pred HHcCCCcc
Q psy9408 102 ALLNWPQA 109 (219)
Q Consensus 102 ~~Lg~p~v 109 (219)
..-.+|++
T Consensus 485 ~~t~~pvi 492 (577)
T PLN02948 485 SMTPLPVI 492 (577)
T ss_pred hccCCCEE
Confidence 99999977
No 104
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=65.77 E-value=10 Score=31.26 Aligned_cols=45 Identities=9% Similarity=0.052 Sum_probs=31.6
Q ss_pred CCHH---HHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 61 LQSL---SVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 61 ~d~~---~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
.||. .++..+++.+++.++|.|++..+ .+--++..+|.+||.|++
T Consensus 30 ~~p~~l~~v~~~l~~~~~~~~~d~Vv~~ea----~Gi~la~~lA~~Lg~p~v 77 (191)
T TIGR01744 30 IDPKLMQEVGEEFARRFADDGITKIVTIEA----SGIAPAIMTGLKLGVPVV 77 (191)
T ss_pred cCHHHHHHHHHHHHHHhccCCCCEEEEEcc----ccHHHHHHHHHHHCCCEE
Confidence 4565 44555555555567999875443 346789999999999977
No 105
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=65.66 E-value=89 Score=26.98 Aligned_cols=96 Identities=17% Similarity=0.167 Sum_probs=56.6
Q ss_pred hHHHHHHHHHhhhhcCCCcEEEE-EEe--cCc----chHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCC
Q psy9408 7 DEIAIESAIRLRESSNKIKEIIA-ISC--GNK----KCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENP 79 (219)
Q Consensus 7 D~~Ale~A~~l~e~~g~g~~V~a-v~~--G~~----~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~ 79 (219)
|...+..+.+.+.+. |.+|.. +.+ ++. ...+..+++.++|+|++++.+.-....|..+.+.+..+-+..+.
T Consensus 116 ~~~~~~~~i~~ak~~--G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~ 193 (275)
T cd07937 116 DVRNLEVAIKAVKKA--GKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMAGLLTPYAAYELVKALKKEVGL 193 (275)
T ss_pred hHHHHHHHHHHHHHC--CCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 444555666666554 355543 433 221 23456778899999998887754467899999988888776653
Q ss_pred CEEEEcccccCCCcCcHHHHHHH-HcCCC
Q psy9408 80 QLVILGKQSIDSDNNQTGQMLAA-LLNWP 107 (219)
Q Consensus 80 dlVl~G~~s~d~~~~~v~~~lA~-~Lg~p 107 (219)
.+=+=.+ +..+-.++-.+++ ..|+-
T Consensus 194 ~l~~H~H---nd~GlA~aN~laA~~aGa~ 219 (275)
T cd07937 194 PIHLHTH---DTSGLAVATYLAAAEAGVD 219 (275)
T ss_pred eEEEEec---CCCChHHHHHHHHHHhCCC
Confidence 3333333 3233445555544 33433
No 106
>PLN02293 adenine phosphoribosyltransferase
Probab=65.29 E-value=13 Score=30.42 Aligned_cols=41 Identities=10% Similarity=-0.069 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 65 SVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 65 ~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
..+..+++.+++.++|+|+.... .|-.++..+|.+||.|++
T Consensus 49 ~~~~~l~~~~~~~~~d~Ivg~e~----~Gi~lA~~lA~~Lg~p~v 89 (187)
T PLN02293 49 DTIDLFVERYRDMGISVVAGIEA----RGFIFGPPIALAIGAKFV 89 (187)
T ss_pred HHHHHHHHHHhhcCCCEEEEeCC----CchHHHHHHHHHHCCCEE
Confidence 46677777777778998875432 356699999999999976
No 107
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=64.80 E-value=84 Score=26.73 Aligned_cols=63 Identities=22% Similarity=0.244 Sum_probs=42.0
Q ss_pred hHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHH
Q psy9408 37 CKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAA 102 (219)
Q Consensus 37 ~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~ 102 (219)
..+..+.+..+|+|.+++.+.-....|+.+...+..+.+..+..+ |-..-+..+-.++-.+|+
T Consensus 141 ~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~l---~~H~Hn~~Gla~An~laA 203 (259)
T cd07939 141 LIEFAEVAQEAGADRLRFADTVGILDPFTTYELIRRLRAATDLPL---EFHAHNDLGLATANTLAA 203 (259)
T ss_pred HHHHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCeE---EEEecCCCChHHHHHHHH
Confidence 345667788999999888775456799999999988887665333 434333333445555544
No 108
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=64.48 E-value=71 Score=31.89 Aligned_cols=113 Identities=12% Similarity=0.079 Sum_probs=79.4
Q ss_pred hHHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecC-CCCCHHHHHHHHHHHHHhc--------
Q psy9408 7 DEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETD-TILQSLSVAKLLQVIVKKE-------- 77 (219)
Q Consensus 7 D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~-~~~d~~~~A~~la~~ik~~-------- 77 (219)
....+.+..++.++ .++=++.+|+-. .+-++++.+.|++-+-.++.= ...|+.+.++.+.+.++..
T Consensus 151 G~~~l~~~~~~~~~----~~iPv~AiGGI~-~~~~~~~~~~Ga~giAvisai~~a~d~~~a~~~l~~~~~~~~~~~~~~~ 225 (755)
T PRK09517 151 GVDGIAEIAAVAQD----HGIASVAIGGVG-LRNAAELAATGIDGLCVVSAIMAAANPAAAARELRTAFQPTRSPETQTE 225 (755)
T ss_pred CHHHHHHHHHhcCc----CCCCEEEECCCC-HHHHHHHHHcCCCEEEEehHhhCCCCHHHHHHHHHHHHHHhhccccccc
Confidence 34455554444332 125566788765 456889999999999988741 2457888888777766643
Q ss_pred ----------------CCCEEEEcccccCCCcCcHHHHHHHHcCCCcccceeEEEEeeCCeEE
Q psy9408 78 ----------------NPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIVLKKNNKIL 124 (219)
Q Consensus 78 ----------------~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~~~~~~~ 124 (219)
..=|.+.|.-+++|.|-|-=-+..+.||+-..+-++.+...+..++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~vLtIaGsD~sggAGi~aDlkt~~alg~~~~~viTaltaQn~~~v~ 288 (755)
T PRK09517 226 LSQTELQGAFVNSPSAPRVLSIAGTDPTGGAGIQADLKSIAAGGGYGMCVVTALVAQNTHGVN 288 (755)
T ss_pred cccccccccccccCCCCeEEEEeccCCCcHHHHHHHHHHHHHcCCcccchheeEeeEccccee
Confidence 11378888888888777788899999999999999999988333343
No 109
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=64.23 E-value=66 Score=30.68 Aligned_cols=32 Identities=19% Similarity=0.144 Sum_probs=23.5
Q ss_pred HHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 69 LLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 69 ~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
-+.+++++.+||++|-+. -+-.+|.++|+|++
T Consensus 428 ~l~~~l~~~~~DlliG~s---------~~k~~a~~~giPli 459 (515)
T TIGR01286 428 HLRSLVFTEPVDFLIGNS---------YGKYIQRDTLVPLI 459 (515)
T ss_pred HHHHHHhhcCCCEEEECc---------hHHHHHHHcCCCEE
Confidence 344566777899998322 45688999999986
No 110
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=64.13 E-value=42 Score=31.57 Aligned_cols=67 Identities=18% Similarity=0.137 Sum_probs=38.7
Q ss_pred HHHHHHHHhhhhcCCCcEEEEEEecCc--c----hHHHHHHHH-hCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCE
Q psy9408 9 IAIESAIRLRESSNKIKEIIAISCGNK--K----CKEILQIAM-AMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQL 81 (219)
Q Consensus 9 ~Ale~A~~l~e~~g~g~~V~av~~G~~--~----~~~~lr~~~-a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dl 81 (219)
.++..++-|.+ + |.+++.+..... . ..+.+++.. .+|.+..+++++ .|.+ -+.+.+++.+||+
T Consensus 325 ~~i~LarfL~e-l--GmevV~vgt~~~~~~~~~~d~~~l~~~~~~~~~~~~vive~---~D~~----el~~~i~~~~pDL 394 (457)
T CHL00073 325 LEISLARFLIR-C--GMIVYEIGIPYMDKRYQAAELALLEDTCRKMNVPMPRIVEK---PDNY----NQIQRIRELQPDL 394 (457)
T ss_pred HHHHHHHHHHH-C--CCEEEEEEeCCCChhhhHHHHHHHHHHhhhcCCCCcEEEeC---CCHH----HHHHHHhhCCCCE
Confidence 45566666776 5 467766655522 2 112233332 366666666663 2433 3446778889999
Q ss_pred EEEc
Q psy9408 82 VILG 85 (219)
Q Consensus 82 Vl~G 85 (219)
+++|
T Consensus 395 lIgG 398 (457)
T CHL00073 395 AITG 398 (457)
T ss_pred EEcc
Confidence 9988
No 111
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=64.04 E-value=19 Score=31.84 Aligned_cols=70 Identities=21% Similarity=0.273 Sum_probs=46.1
Q ss_pred hHHHHHHHHhCCCCEEEEEecCC----C-C----CHHHHHHHHHHHHHhcC-CCEEEEcccccCCCcCcHHHHHHHHcCC
Q psy9408 37 CKEILQIAMAMGVDRAILIETDT----I-L----QSLSVAKLLQVIVKKEN-PQLVILGKQSIDSDNNQTGQMLAALLNW 106 (219)
Q Consensus 37 ~~~~lr~~~a~GaD~v~~v~~~~----~-~----d~~~~A~~la~~ik~~~-~dlVl~G~~s~d~~~~~v~~~lA~~Lg~ 106 (219)
+.-.++.+-++|+|+++.++... + + +...-...+++.+++.+ .+.+++|- |..+-..+..+|..||+
T Consensus 106 ak~~a~lL~~~g~d~vitvD~H~~~~~~~f~~p~~~l~~~~~l~~~i~~~~~~~~vvv~p---d~Gg~~~A~~la~~Lg~ 182 (309)
T PRK01259 106 AKLVANLLETAGADRVLTMDLHADQIQGFFDIPVDNLYGSPILLEDIKQKNLENLVVVSP---DVGGVVRARALAKRLDA 182 (309)
T ss_pred HHHHHHHHhhcCCCEEEEEcCChHHHcCcCCCCceeeeecHHHHHHHHhcCCCCcEEEEE---CCCcHHHHHHHHHHhCC
Confidence 34445555567999999998532 1 1 23334577888886643 23444443 34567899999999999
Q ss_pred Ccc
Q psy9408 107 PQA 109 (219)
Q Consensus 107 p~v 109 (219)
|+.
T Consensus 183 ~~~ 185 (309)
T PRK01259 183 DLA 185 (309)
T ss_pred CEE
Confidence 876
No 112
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=63.39 E-value=58 Score=30.56 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=24.3
Q ss_pred HHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 69 LLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 69 ~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
-+.+.+++.+||++|.+. -.-.+|.++|+|++
T Consensus 384 e~~~~i~~~~pDliig~s---------~~~~~a~k~giP~~ 415 (475)
T PRK14478 384 ELYKMLKEAKADIMLSGG---------RSQFIALKAGMPWL 415 (475)
T ss_pred HHHHHHhhcCCCEEEecC---------chhhhhhhcCCCEE
Confidence 344567778999999752 44578999999987
No 113
>PRK01215 competence damage-inducible protein A; Provisional
Probab=63.08 E-value=1e+02 Score=26.70 Aligned_cols=82 Identities=11% Similarity=0.042 Sum_probs=50.9
Q ss_pred EEEEEEecCc-------c--hHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcH
Q psy9408 26 EIIAISCGNK-------K--CKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQT 96 (219)
Q Consensus 26 ~V~av~~G~~-------~--~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v 96 (219)
++..++.|.+ + ..-..+.+..+|++-.....- .-|.+.+.++|.++.+ ..|+|++.....-+..-.+
T Consensus 5 ~v~Ii~~GdEll~G~i~dtn~~~l~~~L~~~G~~v~~~~~v--~Dd~~~I~~~l~~a~~--~~DlVIttGG~g~t~dD~t 80 (264)
T PRK01215 5 FAWIITIGNELLIGRTVNTNASWIARRLTYLGYTVRRITVV--MDDIEEIVSAFREAID--RADVVVSTGGLGPTYDDKT 80 (264)
T ss_pred EEEEEEEChhccCCeEEEhhHHHHHHHHHHCCCeEEEEEEe--CCCHHHHHHHHHHHhc--CCCEEEEeCCCcCChhhhH
Confidence 5666677764 1 112334566789875443321 2356677888888775 4688776555444444566
Q ss_pred HHHHHHHcCCCcccc
Q psy9408 97 GQMLAALLNWPQATF 111 (219)
Q Consensus 97 ~~~lA~~Lg~p~vt~ 111 (219)
...+|..+|.++.-+
T Consensus 81 ~eaia~~~g~~l~~~ 95 (264)
T PRK01215 81 NEGFAKALGVELELN 95 (264)
T ss_pred HHHHHHHhCCCCCCC
Confidence 667778889888876
No 114
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=62.63 E-value=1.1e+02 Score=28.43 Aligned_cols=72 Identities=17% Similarity=0.147 Sum_probs=43.0
Q ss_pred EEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHH------------------HHHHHHHHHHhcCCCEEEEccccc
Q psy9408 28 IAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLS------------------VAKLLQVIVKKENPQLVILGKQSI 89 (219)
Q Consensus 28 ~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~------------------~A~~la~~ik~~~~dlVl~G~~s~ 89 (219)
.++..|+...-...+.+..+|.+-+...... .+.+. -..-+.+.+++.+||+++.+.
T Consensus 329 v~i~~g~~~~~~l~~~l~elGmevv~~~t~~--~~~~d~~~l~~~~~~~~~v~~~~d~~e~~~~i~~~~pDl~ig~~--- 403 (456)
T TIGR01283 329 AAIYTGGVKSWSLVSALQDLGMEVVATGTQK--GTEEDYARIRELMGEGTVMLDDANPRELLKLLLEYKADLLIAGG--- 403 (456)
T ss_pred EEEEcCCchHHHHHHHHHHCCCEEEEEeeec--CCHHHHHHHHHHcCCCeEEEeCCCHHHHHHHHhhcCCCEEEEcc---
Confidence 3555665544556666667787754443211 11110 123466677888999999542
Q ss_pred CCCcCcHHHHHHHHcCCCccc
Q psy9408 90 DSDNNQTGQMLAALLNWPQAT 110 (219)
Q Consensus 90 d~~~~~v~~~lA~~Lg~p~vt 110 (219)
..-.+|.++|+|++.
T Consensus 404 ------~~~~~a~k~giP~i~ 418 (456)
T TIGR01283 404 ------KERYTALKLGIPFCD 418 (456)
T ss_pred ------chHHHHHhcCCCEEE
Confidence 446788899999873
No 115
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=62.26 E-value=61 Score=28.76 Aligned_cols=99 Identities=17% Similarity=0.157 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHhcCCCEEE-EcccccCCCcCcHHHHHHHHcCCCcccceeEEEEee-CCeEEEEEEcCCeEEEEEE--
Q psy9408 63 SLSVAKLLQVIVKKENPQLVI-LGKQSIDSDNNQTGQMLAALLNWPQATFASKIVLKK-NNKILVTQEIEDGKETILL-- 138 (219)
Q Consensus 63 ~~~~A~~la~~ik~~~~dlVl-~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~~-~~~~~~~R~~~gG~~~~~~-- 138 (219)
+......+++..++.++|.|+ +|..|. -+++-.+|.+++.|+++=-|...-.+ .....++.. +.+..+..
T Consensus 62 ~~~~v~~~~~~~~~~~~d~IIaiGGGs~----iD~aK~ia~~~~~p~i~IPTtatgse~t~~avit~~--g~K~~i~~~~ 135 (337)
T cd08177 62 PVEVTEAAVAAAREAGADGIVAIGGGST----IDLAKAIALRTGLPIIAIPTTLSGSEMTPIAGVTEN--GVKTTGRDPE 135 (337)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCcHH----HHHHHHHHHHhcCCEEEEcCCchhhhhcCeEEEecC--CceeEeeCcc
Confidence 344666777777788999888 666443 34888888888999886555442111 111222322 44444433
Q ss_pred cCCEEEEEecCCCC--CCCCCHHHHHHHccC
Q psy9408 139 SLPAIITTDLRMNE--PRYVTLMNIIKARKK 167 (219)
Q Consensus 139 ~~P~vvtv~~~~~~--pr~p~l~~~~~A~~~ 167 (219)
-.|-++-+.+.... |+.-+....|.|-..
T Consensus 136 ~~P~~~i~Dp~l~~~~P~~~~~~~g~Dal~h 166 (337)
T cd08177 136 VLPRTVIYDPELTLTTPRRLWLSSGIRAIDH 166 (337)
T ss_pred ccCCEEEEChHHhcCCCHHHHHHHHHHHHHH
Confidence 35777777765443 333333344444433
No 116
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=61.88 E-value=76 Score=28.40 Aligned_cols=72 Identities=21% Similarity=0.312 Sum_probs=49.0
Q ss_pred HHHHHHhCCCCEEEEEecCC----C-----CCHHHHHHHHHHHHHhc-CC-CEEEEcccccCCCcCcHHHHHHHHcCCCc
Q psy9408 40 ILQIAMAMGVDRAILIETDT----I-----LQSLSVAKLLQVIVKKE-NP-QLVILGKQSIDSDNNQTGQMLAALLNWPQ 108 (219)
Q Consensus 40 ~lr~~~a~GaD~v~~v~~~~----~-----~d~~~~A~~la~~ik~~-~~-dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~ 108 (219)
.++.+-..|+|+++.++-.. + .|..-....+++.+++. .. |.|+. |.|..+-.-+-.+|..||.|
T Consensus 113 vA~lL~~aG~drv~TvDlH~~qiqgfFdipvdnl~a~p~l~~~~~~~~~~~d~vVV---SPD~Ggv~RAr~~A~~L~~~- 188 (314)
T COG0462 113 VANLLETAGADRVLTVDLHAPQIQGFFDIPVDNLYAAPLLAEYIREKYDLDDPVVV---SPDKGGVKRARALADRLGAP- 188 (314)
T ss_pred HHHHHHHcCCCeEEEEcCCchhhcccCCCccccccchHHHHHHHHHhcCCCCcEEE---CCCccHHHHHHHHHHHhCCC-
Confidence 34444556999999998532 1 24445678899998886 33 55555 34556778899999999999
Q ss_pred ccceeEE
Q psy9408 109 ATFASKI 115 (219)
Q Consensus 109 vt~v~~l 115 (219)
+..+.+-
T Consensus 189 ~a~i~K~ 195 (314)
T COG0462 189 LAIIDKR 195 (314)
T ss_pred EEEEEEe
Confidence 4444433
No 117
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=61.63 E-value=11 Score=32.11 Aligned_cols=41 Identities=10% Similarity=0.042 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 65 SVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 65 ~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
..+..+++..+..++|.|++-.+ .|=.+|..+|.+||.|++
T Consensus 98 ~v~~~la~~~~~~~~D~Vvtv~~----~GI~lA~~lA~~L~~p~v 138 (238)
T PRK08558 98 LIAPVVAERFMGLRVDVVLTAAT----DGIPLAVAIASYFGADLV 138 (238)
T ss_pred HHHHHHHHHccCCCCCEEEEECc----ccHHHHHHHHHHHCcCEE
Confidence 34455666555567999987655 356788999999999977
No 118
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=61.33 E-value=84 Score=25.19 Aligned_cols=69 Identities=13% Similarity=0.067 Sum_probs=43.9
Q ss_pred HHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccceeE
Q psy9408 42 QIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASK 114 (219)
Q Consensus 42 r~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~ 114 (219)
+.+...|++-....-- .-|.+.+.++|.++.+ .+|+|++...+.-+..-.+...++..+|.++.-+-..
T Consensus 26 ~~L~~~G~~v~~~~~v--~Dd~~~I~~~l~~~~~--~~dlVIttGG~G~t~~D~t~ea~~~~~~~~l~~~~e~ 94 (170)
T cd00885 26 KELAELGIEVYRVTVV--GDDEDRIAEALRRASE--RADLVITTGGLGPTHDDLTREAVAKAFGRPLVLDEEA 94 (170)
T ss_pred HHHHHCCCEEEEEEEe--CCCHHHHHHHHHHHHh--CCCEEEECCCCCCCCCChHHHHHHHHhCCCcccCHHH
Confidence 3455678764332111 2255677788887775 5788776555444455678888888999998755444
No 119
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=61.24 E-value=23 Score=30.24 Aligned_cols=87 Identities=7% Similarity=0.032 Sum_probs=55.8
Q ss_pred cEEEEEEecCcchHHHHHH-HHhCCCCEEEEEecC----C---CCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcH
Q psy9408 25 KEIIAISCGNKKCKEILQI-AMAMGVDRAILIETD----T---ILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQT 96 (219)
Q Consensus 25 ~~V~av~~G~~~~~~~lr~-~~a~GaD~v~~v~~~----~---~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v 96 (219)
.+|..++-=.++..+.+++ .-+.|.+-+-....+ . ..+++.+.+.+.++ ...++|.||+.+|.. .+-.+
T Consensus 121 ~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~-~~~~aDAifisCTnL--rt~~v 197 (239)
T TIGR02990 121 RRISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAA-FDPDADALFLSCTAL--RAATC 197 (239)
T ss_pred CEEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHh-cCCCCCEEEEeCCCc--hhHHH
Confidence 4676666434444455555 444676644332211 1 24666666655554 245799999998875 57889
Q ss_pred HHHHHHHcCCCcccceeE
Q psy9408 97 GQMLAALLNWPQATFASK 114 (219)
Q Consensus 97 ~~~lA~~Lg~p~vt~v~~ 114 (219)
-+.+-..||.|++|....
T Consensus 198 i~~lE~~lGkPVlsSNqa 215 (239)
T TIGR02990 198 AQRIEQAIGKPVVTSNQA 215 (239)
T ss_pred HHHHHHHHCCCEEEHHHH
Confidence 999999999999976543
No 120
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=61.23 E-value=56 Score=29.02 Aligned_cols=59 Identities=22% Similarity=0.300 Sum_probs=38.8
Q ss_pred chHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcC
Q psy9408 36 KCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLN 105 (219)
Q Consensus 36 ~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg 105 (219)
+.++.++..-+.+++++|++.+ +.+....|+..+++.++. ++++....+ ++..+|+.+.
T Consensus 130 S~~dl~~Ai~~~~a~~VivLPN--n~ni~~aa~qa~~~~~~~--~v~VipTks-------~~qGlaAl~~ 188 (313)
T PF13684_consen 130 STEDLLNAIEKVGADEVIVLPN--NKNIILAAEQAARLSEDK--NVVVIPTKS-------IPQGLAALLV 188 (313)
T ss_pred CHHHHHHHHHhCCCCeEEEEeC--CchHHHHHHHHHHHhcCC--CEEEEecCC-------HHHHHHHHHH
Confidence 4566666666668888888875 456666777777777543 577776554 6666666644
No 121
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=60.84 E-value=1.2e+02 Score=27.95 Aligned_cols=75 Identities=20% Similarity=0.178 Sum_probs=43.8
Q ss_pred cEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCC-CCCHHH------------------HHHHHHHHHHhcCCCEEEEc
Q psy9408 25 KEIIAISCGNKKCKEILQIAMAMGVDRAILIETDT-ILQSLS------------------VAKLLQVIVKKENPQLVILG 85 (219)
Q Consensus 25 ~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~-~~d~~~------------------~A~~la~~ik~~~~dlVl~G 85 (219)
.+| +|..++..+-...+-+..+|.+-+.++.... ..+.+. -..-+.+.+++.+||+|+.+
T Consensus 300 k~v-~i~~~~~~~~~l~~~L~e~G~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~el~~~i~~~~pdliig~ 378 (428)
T cd01965 300 KRV-AIAGDPDLLLGLSRFLLEMGAEPVAAVTGTDNPPFEKRMELLASLEGIPAEVVFVGDLWDLESLAKEEPVDLLIGN 378 (428)
T ss_pred CEE-EEEcChHHHHHHHHHHHHcCCcceEEEEcCCCchhHHHHHHhhhhcCCCceEEECCCHHHHHHHhhccCCCEEEEC
Confidence 344 3444444344455666677877655544211 110000 11445567888899999964
Q ss_pred ccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 86 KQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 86 ~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
. ..-.+|.++|+|++
T Consensus 379 ~---------~~~~~a~~~~ip~i 393 (428)
T cd01965 379 S---------HGRYLARDLGIPLV 393 (428)
T ss_pred c---------hhHHHHHhcCCCEE
Confidence 4 34688999999996
No 122
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=60.74 E-value=63 Score=27.92 Aligned_cols=73 Identities=11% Similarity=0.137 Sum_probs=40.5
Q ss_pred EEEEecCcch---------HHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHH
Q psy9408 28 IAISCGNKKC---------KEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQ 98 (219)
Q Consensus 28 ~av~~G~~~~---------~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~ 98 (219)
++|.+|+.+. ...++.+-..|.+ +.++..+..+ .. ...+..++|+||.-.....+..+++ +
T Consensus 3 v~v~~gg~s~e~~~sl~s~~~i~~al~~~g~~-~~~i~~~~~~-----~~---~~~~~~~~D~v~~~~~g~~ge~~~~-~ 72 (299)
T PRK14571 3 VALLMGGVSREREISLRSGERVKKALEKLGYE-VTVFDVDEDF-----LK---KVDQLKSFDVVFNVLHGTFGEDGTL-Q 72 (299)
T ss_pred EEEEeCCCCCCccchHHHHHHHHHHHHHcCCe-EEEEccCchH-----HH---HhhhccCCCEEEEeCCCCCCCccHH-H
Confidence 4667776542 2334444466766 4445433211 11 1112236898887765544444665 5
Q ss_pred HHHHHcCCCccc
Q psy9408 99 MLAALLNWPQAT 110 (219)
Q Consensus 99 ~lA~~Lg~p~vt 110 (219)
.+.+.+|+|++.
T Consensus 73 ~~le~~gip~~G 84 (299)
T PRK14571 73 AILDFLGIRYTG 84 (299)
T ss_pred HHHHHcCCCccC
Confidence 677789999873
No 123
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=60.60 E-value=27 Score=30.85 Aligned_cols=68 Identities=18% Similarity=0.267 Sum_probs=45.1
Q ss_pred hHHHHHHHHhCCCCEEEEEecCC----C-C----CHHHHHHHHHHHHHhc--CCCEEEEcccccCCCcCcHHHHHHHHcC
Q psy9408 37 CKEILQIAMAMGVDRAILIETDT----I-L----QSLSVAKLLQVIVKKE--NPQLVILGKQSIDSDNNQTGQMLAALLN 105 (219)
Q Consensus 37 ~~~~lr~~~a~GaD~v~~v~~~~----~-~----d~~~~A~~la~~ik~~--~~dlVl~G~~s~d~~~~~v~~~lA~~Lg 105 (219)
+.-.++.+-++|+|+++.++-.. + + +....+..+++.+++. ..+.++++- |..+-..+..+|..|+
T Consensus 95 ak~va~lL~~~g~d~vitvD~H~~~~~~~f~~p~~~l~~~~~la~~i~~~~~~~~~vvVsp---d~Ga~~~a~~la~~L~ 171 (304)
T PRK03092 95 ARLVADLFKTAGADRIMTVDLHTAQIQGFFDGPVDHLFAMPLLADYVRDKYDLDNVTVVSP---DAGRVRVAEQWADRLG 171 (304)
T ss_pred HHHHHHHHHhcCCCeEEEEecChHHHHhhcCCCeeeEechHHHHHHHHHhcCCCCcEEEEe---cCchHHHHHHHHHHcC
Confidence 44455556677999999999532 1 2 2234456777777553 356666654 3456678999999999
Q ss_pred -CC
Q psy9408 106 -WP 107 (219)
Q Consensus 106 -~p 107 (219)
+|
T Consensus 172 ~~~ 174 (304)
T PRK03092 172 GAP 174 (304)
T ss_pred CCC
Confidence 66
No 124
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=60.28 E-value=50 Score=29.83 Aligned_cols=59 Identities=8% Similarity=0.155 Sum_probs=34.8
Q ss_pred EEEEEecCcc-hHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHH-hcCCCEEEEccc
Q psy9408 27 IIAISCGNKK-CKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVK-KENPQLVILGKQ 87 (219)
Q Consensus 27 V~av~~G~~~-~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik-~~~~dlVl~G~~ 87 (219)
-.++.+|.++ .+-.++.+.+.|+.++++.. +.+....+...-.+.+. ..++|+|+++.+
T Consensus 175 k~vLvIGaGem~~l~a~~L~~~g~~~i~v~n--Rt~~~~~~~~~~~~~~~~~~~~DvVIs~t~ 235 (338)
T PRK00676 175 ASLLFIGYSEINRKVAYYLQRQGYSRITFCS--RQQLTLPYRTVVREELSFQDPYDVIFFGSS 235 (338)
T ss_pred CEEEEEcccHHHHHHHHHHHHcCCCEEEEEc--CCccccchhhhhhhhhhcccCCCEEEEcCC
Confidence 4666777654 45577888899998888776 23222222222112222 146899998743
No 125
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=60.01 E-value=70 Score=29.22 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=23.9
Q ss_pred HHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 69 LLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 69 ~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
.+.+.+++.+||+++.+. ..-.+|.++|+|++
T Consensus 347 e~~~~i~~~~pDl~ig~s---------~~~~~a~~~gip~~ 378 (410)
T cd01968 347 ELKKLLKEKKADLLVAGG---------KERYLALKLGIPFC 378 (410)
T ss_pred HHHHHHhhcCCCEEEECC---------cchhhHHhcCCCEE
Confidence 455667777899988653 33478999999987
No 126
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=59.47 E-value=1.3e+02 Score=29.22 Aligned_cols=94 Identities=16% Similarity=0.176 Sum_probs=55.3
Q ss_pred HHHHHHHHhhhhcCCCcEEEE-EE--ecC----cchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCE
Q psy9408 9 IAIESAIRLRESSNKIKEIIA-IS--CGN----KKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQL 81 (219)
Q Consensus 9 ~Ale~A~~l~e~~g~g~~V~a-v~--~G~----~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dl 81 (219)
.-+..+.+.+.+.| ..|.+ ++ ..| ....+.++++..+|+|.+++.+.-....|..+...+.++-+..+..+
T Consensus 118 ~n~~~~i~~ak~~G--~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~~~pi 195 (582)
T TIGR01108 118 RNLQAAIQAAKKHG--AHAQGTISYTTSPVHTLETYLDLAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKRFGLPV 195 (582)
T ss_pred HHHHHHHHHHHHcC--CEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhCCCce
Confidence 44666677776654 45543 23 222 22346788899999998777664446789988888888766654333
Q ss_pred EEEcccccCCCcCcHHHHHHH-HcCCC
Q psy9408 82 VILGKQSIDSDNNQTGQMLAA-LLNWP 107 (219)
Q Consensus 82 Vl~G~~s~d~~~~~v~~~lA~-~Lg~p 107 (219)
=+ .+-+..+-.++-.+|+ ..|+-
T Consensus 196 ~~---H~Hnt~Gla~An~laAveaGa~ 219 (582)
T TIGR01108 196 HL---HSHATTGMAEMALLKAIEAGAD 219 (582)
T ss_pred EE---EecCCCCcHHHHHHHHHHhCCC
Confidence 33 3333334445555543 33433
No 127
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=59.40 E-value=46 Score=22.87 Aligned_cols=56 Identities=11% Similarity=0.076 Sum_probs=38.4
Q ss_pred EEEecCCCC-CHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCccc
Q psy9408 53 ILIETDTIL-QSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQAT 110 (219)
Q Consensus 53 ~~v~~~~~~-d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt 110 (219)
+++...+.+ |-..+-.+|-++.++...-+|+.|....+ ...++.+-|...|++++.
T Consensus 6 Vli~GgR~~~D~~~i~~~Ld~~~~~~~~~~lvhGga~~G--aD~iA~~wA~~~gv~~~~ 62 (71)
T PF10686_consen 6 VLITGGRDWTDHELIWAALDKVHARHPDMVLVHGGAPKG--ADRIAARWARERGVPVIR 62 (71)
T ss_pred EEEEECCccccHHHHHHHHHHHHHhCCCEEEEECCCCCC--HHHHHHHHHHHCCCeeEE
Confidence 445545544 77778888888887775445555655333 346999999999998874
No 128
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=59.03 E-value=68 Score=28.67 Aligned_cols=96 Identities=10% Similarity=0.106 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhcCCCEEE-EcccccCCCcCcHHHHHHHHcCCCcccceeEEEEe-e-CCeEEEEEEcCCeEEEEEEcC
Q psy9408 64 LSVAKLLQVIVKKENPQLVI-LGKQSIDSDNNQTGQMLAALLNWPQATFASKIVLK-K-NNKILVTQEIEDGKETILLSL 140 (219)
Q Consensus 64 ~~~A~~la~~ik~~~~dlVl-~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~-~-~~~~~~~R~~~gG~~~~~~~~ 140 (219)
......+.+.+++.++|+|+ +|..+. .+++..+|.+.|+|++.=-|.+..+ + ++...+.. .+++.......
T Consensus 73 ~~~v~~~~~~~~~~~~d~IIaiGGGsv----~D~ak~vA~~rgip~I~IPTT~~tds~~s~~a~i~~--~~~~~~~~~~~ 146 (350)
T PRK00843 73 MEEVEKVEEKAKDVNAGFLIGVGGGKV----IDVAKLAAYRLGIPFISVPTAASHDGIASPRASIKG--GGKPVSVKAKP 146 (350)
T ss_pred HHHHHHHHHHhhccCCCEEEEeCCchH----HHHHHHHHHhcCCCEEEeCCCccCCcccCCceEEEe--CCceeeecCCC
Confidence 34455566666667889888 665443 4589999999999987655554321 0 12222222 23333333346
Q ss_pred CEEEEEecCCCC--CCCCCHHHHHHHc
Q psy9408 141 PAIITTDLRMNE--PRYVTLMNIIKAR 165 (219)
Q Consensus 141 P~vvtv~~~~~~--pr~p~l~~~~~A~ 165 (219)
|..+-+.+.... |..-...+++.+-
T Consensus 147 P~~vivD~~~l~tlP~~~~~sg~~d~l 173 (350)
T PRK00843 147 PLAVIADTEIIAKAPYRLLAAGCGDII 173 (350)
T ss_pred CeEEEEcHHHHhcCCHHHHHHHHHHHH
Confidence 866667664332 3333444444444
No 129
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=58.76 E-value=1.2e+02 Score=26.22 Aligned_cols=41 Identities=20% Similarity=0.318 Sum_probs=32.5
Q ss_pred hHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhc
Q psy9408 37 CKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKE 77 (219)
Q Consensus 37 ~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~ 77 (219)
..+.++.+.++|+|++++.+.-....|..+.+.+..+.++.
T Consensus 151 ~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~ 191 (274)
T cd07938 151 VAEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLERF 191 (274)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHHC
Confidence 34567888999999988876545679999999988887665
No 130
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=58.50 E-value=91 Score=24.67 Aligned_cols=94 Identities=19% Similarity=0.216 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhhhcCCCcEEEEEEecCcc---------------hHHHHHHHHhCCCCEEEEEecCC---CCCHHHHHHH
Q psy9408 8 EIAIESAIRLRESSNKIKEIIAISCGNKK---------------CKEILQIAMAMGVDRAILIETDT---ILQSLSVAKL 69 (219)
Q Consensus 8 ~~Ale~A~~l~e~~g~g~~V~av~~G~~~---------------~~~~lr~~~a~GaD~v~~v~~~~---~~d~~~~A~~ 69 (219)
...++.|.+++++. +....++++-+.. -++-++.+-.+|+|.++.++-+. ..+++..-
T Consensus 22 q~Li~~~~~~a~~~--~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~Gvd~~~~~~F~~~~~~ls~~~Fi-- 97 (157)
T PF06574_consen 22 QKLIKKAVEIAKEK--GLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESLGVDYVIVIPFTEEFANLSPEDFI-- 97 (157)
T ss_dssp HHHHHHHHHHHHHC--T-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHTTESEEEEE-CCCHHCCS-HHHHH--
T ss_pred HHHHHHHhhhhhhc--ccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHcCCCEEEEecchHHHHcCCHHHHH--
Confidence 35788899999876 4788899998632 23446677889999999998553 45666433
Q ss_pred HHHHHH-hcCCCEEEEcccccCCCcCcHHHHHHHHcCC
Q psy9408 70 LQVIVK-KENPQLVILGKQSIDSDNNQTGQMLAALLNW 106 (219)
Q Consensus 70 la~~ik-~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~ 106 (219)
-.+++ +.+...|++|.-..=|..+.--...-..++-
T Consensus 98 -~~iL~~~l~~~~ivvG~DfrFG~~~~G~~~~L~~~~~ 134 (157)
T PF06574_consen 98 -EKILKEKLNVKHIVVGEDFRFGKNRSGDVELLKELGK 134 (157)
T ss_dssp -HHHCCCHCTEEEEEEETT-EESGGGEEEHHHHHHCTT
T ss_pred -HHHHHhcCCccEEEEccCccCCCCCCCCHHHHHHhcc
Confidence 34444 5788999999876555545444444444443
No 131
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=58.41 E-value=15 Score=29.66 Aligned_cols=47 Identities=17% Similarity=0.394 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccceeE
Q psy9408 68 KLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASK 114 (219)
Q Consensus 68 ~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~ 114 (219)
+.+++.+++-+-=+|++|.........+.--.+|+++++|+++....
T Consensus 18 ~~aa~lLk~AKRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~ 64 (162)
T TIGR00315 18 KLVAMMIKRAKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATADT 64 (162)
T ss_pred HHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCcc
Confidence 34455555555557777877654456778889999999999977754
No 132
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=58.05 E-value=16 Score=32.62 Aligned_cols=37 Identities=27% Similarity=0.368 Sum_probs=27.1
Q ss_pred HHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccce
Q psy9408 70 LQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFA 112 (219)
Q Consensus 70 la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v 112 (219)
+.+++++.+||+|++.... -.+..+|+.+|+|+++..
T Consensus 84 l~~~~~~~~pDlVi~d~~~------~~~~~~A~~~giP~v~~~ 120 (392)
T TIGR01426 84 LEEAYKGDRPDLIVYDIAS------WTGRLLARKWDVPVISSF 120 (392)
T ss_pred HHHHhcCCCCCEEEECCcc------HHHHHHHHHhCCCEEEEe
Confidence 3444556689999986543 267889999999998653
No 133
>PRK09213 pur operon repressor; Provisional
Probab=57.58 E-value=16 Score=31.98 Aligned_cols=45 Identities=11% Similarity=0.113 Sum_probs=32.4
Q ss_pred CCHH---HHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 61 LQSL---SVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 61 ~d~~---~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
.+|. .+++.++..++..++|.|++-.+. |--++..+|..||.|++
T Consensus 110 ~~P~~l~~i~~~la~~~~~~~iD~Vvtvet~----GIplA~~vA~~L~vp~v 157 (271)
T PRK09213 110 GNPSILRKIGRIIASAFADKKIDAVMTVETK----GIPLAYAVANYLNVPFV 157 (271)
T ss_pred CCHHHHHHHHHHHHHHhcccCCCEEEEEccc----cHHHHHHHHHHHCCCEE
Confidence 4554 445555655666679988865553 56799999999999976
No 134
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=57.47 E-value=1.2e+02 Score=28.05 Aligned_cols=68 Identities=21% Similarity=0.198 Sum_probs=44.8
Q ss_pred EEEecCcchHHHHHHHHhCCCCEEEEEecCC-------------CCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCc
Q psy9408 29 AISCGNKKCKEILQIAMAMGVDRAILIETDT-------------ILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQ 95 (219)
Q Consensus 29 av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~-------------~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~ 95 (219)
++..++..+-...+-+..+|.+-+..+.++. ..|. .-+.+.+++.++|+|+.+.
T Consensus 315 ai~~~~~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~~~~~~~~~~D~----~~l~~~i~~~~~dliig~s--------- 381 (432)
T TIGR01285 315 AIAAEPDLLAAWATFFTSMGAQIVAAVTTTGSPLLQKLPVETVVIGDL----EDLEDLACAAGADLLITNS--------- 381 (432)
T ss_pred EEEcCHHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHhCCcCcEEeCCH----HHHHHHHhhcCCCEEEECc---------
Confidence 5555555455566666777877666555321 1133 3567788888999999433
Q ss_pred HHHHHHHHcCCCcc
Q psy9408 96 TGQMLAALLNWPQA 109 (219)
Q Consensus 96 v~~~lA~~Lg~p~v 109 (219)
-+-.+|.+||+|++
T Consensus 382 ~~k~~A~~l~ip~i 395 (432)
T TIGR01285 382 HGRALAQRLALPLV 395 (432)
T ss_pred chHHHHHHcCCCEE
Confidence 44679999999986
No 135
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=57.06 E-value=10 Score=28.86 Aligned_cols=46 Identities=17% Similarity=0.165 Sum_probs=33.6
Q ss_pred HHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccceeE
Q psy9408 69 LLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASK 114 (219)
Q Consensus 69 ~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~ 114 (219)
.+++++++-+-=+|++|......+...---++|+++|+|+++.-..
T Consensus 3 ~~~~~L~~A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~ 48 (137)
T PF00205_consen 3 EAADLLSSAKRPVILAGRGARRSGAAEELRELAEKLGIPVATTPMG 48 (137)
T ss_dssp HHHHHHHH-SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGG
T ss_pred HHHHHHHhCCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCcc
Confidence 4556666555458899998875567788899999999999876655
No 136
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=57.01 E-value=61 Score=29.81 Aligned_cols=37 Identities=14% Similarity=0.210 Sum_probs=25.8
Q ss_pred HHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccc
Q psy9408 68 KLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATF 111 (219)
Q Consensus 68 ~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~ 111 (219)
..+.+++++.+||+++.+... .-...|.++|+|++..
T Consensus 363 ~e~~~~l~~~~pDl~i~~~~~-------~~~~~~~~~gip~~~~ 399 (426)
T cd01972 363 YQFYNLLKRVKPDFIIFRHGG-------LFPDATVYLGIPVVPL 399 (426)
T ss_pred HHHHHHHHHhCCCEEEEcCCC-------ccHHHHHhcCCCEEec
Confidence 357788889999988864432 2344557799998743
No 137
>PLN00200 argininosuccinate synthase; Provisional
Probab=56.38 E-value=75 Score=29.40 Aligned_cols=74 Identities=18% Similarity=0.153 Sum_probs=49.9
Q ss_pred HHhhhhcCCCcEEEEEEecCcc----hHHHHHHHHhCCCCEEEEEecCCC-----------CCH--------------HH
Q psy9408 15 IRLRESSNKIKEIIAISCGNKK----CKEILQIAMAMGVDRAILIETDTI-----------LQS--------------LS 65 (219)
Q Consensus 15 ~~l~e~~g~g~~V~av~~G~~~----~~~~lr~~~a~GaD~v~~v~~~~~-----------~d~--------------~~ 65 (219)
..+++++ |.+|+++++..+. .+..-+.|..+|++..++++-... .++ ..
T Consensus 23 ~~L~e~~--G~eViav~id~Gq~~~el~~a~~~A~~lGi~~~~v~dl~~ef~~~~i~p~i~~Na~ye~~Y~~~tsl~Rp~ 100 (404)
T PLN00200 23 KWLRENY--GCEVVCFTADVGQGIEELEGLEAKAKASGAKQLVVKDLREEFVRDYIFPCLRANAIYEGKYLLGTSMARPL 100 (404)
T ss_pred HHHHHhh--CCeEEEEEEECCCChHHHHHHHHHHHHcCCCEEEEEeCHHHHHHhhcCHHHHcCCcccceeccccchhhHH
Confidence 3445554 3689999887542 234556677999998777762100 011 15
Q ss_pred HHHHHHHHHHhcCCCEEEEcccccC
Q psy9408 66 VAKLLQVIVKKENPQLVILGKQSID 90 (219)
Q Consensus 66 ~A~~la~~ik~~~~dlVl~G~~s~d 90 (219)
.+..|.+.+++.+.+.|.-|.+..+
T Consensus 101 i~~~lv~~A~~~G~~~VahG~tgkG 125 (404)
T PLN00200 101 IAKAMVDIAKEVGADAVAHGATGKG 125 (404)
T ss_pred HHHHHHHHHHHcCCCEEEeCCcCCC
Confidence 5788888899999999999998743
No 138
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=56.05 E-value=17 Score=31.76 Aligned_cols=46 Identities=15% Similarity=0.171 Sum_probs=33.0
Q ss_pred CCHH---HHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCccc
Q psy9408 61 LQSL---SVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQAT 110 (219)
Q Consensus 61 ~d~~---~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt 110 (219)
.||. ..++.++..+++.++|.|++-.+. |--+|..+|.+||.|++-
T Consensus 108 ~~P~~l~~ig~~la~~~~~~~iD~Vvgvetk----GIpLA~avA~~L~vp~vi 156 (268)
T TIGR01743 108 GKPSILSKIGKILASVFAEREIDAVMTVATK----GIPLAYAVASVLNVPLVI 156 (268)
T ss_pred cCHHHHHHHHHHHHHHhcCCCCCEEEEEccc----hHHHHHHHHHHHCCCEEE
Confidence 4554 445566666666689988865553 567999999999999773
No 139
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=55.73 E-value=14 Score=27.40 Aligned_cols=95 Identities=17% Similarity=0.127 Sum_probs=46.3
Q ss_pred HHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCC---CCHHHHHHHHHHHH--HhcCCCEE
Q psy9408 8 EIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTI---LQSLSVAKLLQVIV--KKENPQLV 82 (219)
Q Consensus 8 ~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~---~d~~~~A~~la~~i--k~~~~dlV 82 (219)
.+..+.+..|.+. |.+|++++.++..... +...-|+ +++.+.-... +........+..++ ++.+||+|
T Consensus 5 ~~~~~l~~~L~~~---G~~V~v~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Dvv 77 (160)
T PF13579_consen 5 RYVRELARALAAR---GHEVTVVTPQPDPEDD---EEEEDGV-RVHRLPLPRRPWPLRLLRFLRRLRRLLAARRERPDVV 77 (160)
T ss_dssp HHHHHHHHHHHHT---T-EEEEEEE---GGG----SEEETTE-EEEEE--S-SSSGGGHCCHHHHHHHHCHHCT---SEE
T ss_pred HHHHHHHHHHHHC---CCEEEEEecCCCCccc---ccccCCc-eEEeccCCccchhhhhHHHHHHHHHHHhhhccCCeEE
Confidence 3566778888876 4799999987654311 1111232 2334332221 11222345666666 67789999
Q ss_pred EEcccccCCCcCcHHHHHHH-HcCCCcccceeE
Q psy9408 83 ILGKQSIDSDNNQTGQMLAA-LLNWPQATFASK 114 (219)
Q Consensus 83 l~G~~s~d~~~~~v~~~lA~-~Lg~p~vt~v~~ 114 (219)
.+-... .. ..+.++. ..+.|++..+-+
T Consensus 78 ~~~~~~----~~-~~~~~~~~~~~~p~v~~~h~ 105 (160)
T PF13579_consen 78 HAHSPT----AG-LVAALARRRRGIPLVVTVHG 105 (160)
T ss_dssp EEEHHH----HH-HHHHHHHHHHT--EEEE-SS
T ss_pred Eecccc----hh-HHHHHHHHccCCcEEEEECC
Confidence 987732 22 4455555 889998866654
No 140
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=55.34 E-value=26 Score=32.13 Aligned_cols=82 Identities=18% Similarity=0.234 Sum_probs=22.6
Q ss_pred CHhh---HHHHHHHHHhhhhcCCCcEEEEEEecCc-------c-hHH--HHHHHHhCCCCEEEEEecCC-CCCHHHHHHH
Q psy9408 4 NPFD---EIAIESAIRLRESSNKIKEIIAISCGNK-------K-CKE--ILQIAMAMGVDRAILIETDT-ILQSLSVAKL 69 (219)
Q Consensus 4 Np~D---~~Ale~A~~l~e~~g~g~~V~av~~G~~-------~-~~~--~lr~~~a~GaD~v~~v~~~~-~~d~~~~A~~ 69 (219)
|||- .+-|++++++. | ..+++++|.+. . ... =.+.|+..|||=|+-+...- ...++..|..
T Consensus 11 NPFHnGH~y~i~~~k~~~---~--ad~ii~vMSGnFvQRGEPAi~dKw~RA~~AL~~GaDLViELP~~~a~qsA~~FA~g 85 (388)
T PF05636_consen 11 NPFHNGHLYQIEQAKKIT---G--ADVIIAVMSGNFVQRGEPAIIDKWTRAEMALKNGADLVIELPVVYALQSAEYFARG 85 (388)
T ss_dssp TT--HHHHHHHHHHH------T--SSEEEEEE--TTSBTSSB-SS-HHHHHHHHHHHT-SEEEE---G------------
T ss_pred CCccHHHHHHHHHHhccC---C--CCEEEEEECCCcccCCCeeeCCHHHHHHHHHHcCCCEEEECCCccccccccccccc
Confidence 6654 45566665443 3 34555566542 1 122 35679999999988766321 2244455555
Q ss_pred HHHHHHhcCCCEEEEcccccC
Q psy9408 70 LQVIVKKENPQLVILGKQSID 90 (219)
Q Consensus 70 la~~ik~~~~dlVl~G~~s~d 90 (219)
--.++.+.+.|-+.||..+.|
T Consensus 86 aV~lL~~lgvd~l~FGsE~~~ 106 (388)
T PF05636_consen 86 AVSLLNALGVDYLSFGSESGD 106 (388)
T ss_dssp ---------------------
T ss_pred ccccccccccccccccccccc
Confidence 556777778999999998855
No 141
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=54.98 E-value=19 Score=29.29 Aligned_cols=47 Identities=21% Similarity=0.326 Sum_probs=33.9
Q ss_pred HHHHHHHHhcCCCEEEEcccccC-CCcCcHHHHHHHHcCCCcccceeE
Q psy9408 68 KLLQVIVKKENPQLVILGKQSID-SDNNQTGQMLAALLNWPQATFASK 114 (219)
Q Consensus 68 ~~la~~ik~~~~dlVl~G~~s~d-~~~~~v~~~lA~~Lg~p~vt~v~~ 114 (219)
+.+++.+++-+-=+|++|....+ ....+-.-.+|+++++|+++....
T Consensus 25 ~~aa~lI~~AKrPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~~ 72 (171)
T PRK00945 25 KIAAMMIKKAKRPLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGGS 72 (171)
T ss_pred HHHHHHHHhCCCcEEEECcCccccchHHHHHHHHHHHHCCCEEEcccc
Confidence 34555566555558888988765 445566788999999999977663
No 142
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=54.95 E-value=1.2e+02 Score=26.18 Aligned_cols=87 Identities=16% Similarity=0.215 Sum_probs=57.0
Q ss_pred CcEEEEEEecCcc---hHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHH--HHHHhcCCCEEEEcccccCCCcCcHHH
Q psy9408 24 IKEIIAISCGNKK---CKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQ--VIVKKENPQLVILGKQSIDSDNNQTGQ 98 (219)
Q Consensus 24 g~~V~av~~G~~~---~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la--~~ik~~~~dlVl~G~~s~d~~~~~v~~ 98 (219)
++.|-+++.|..+ ++++.-.+-.+|..-.-..+ =. .-...+.+. +..+..++++++.-.. --|.+|.
T Consensus 117 ~g~vgvlsAGTSDlPvAeEa~~tae~lG~ev~~~~D-vG---VAGiHRLl~~l~r~~~~~~~~lIVvAG----MEGaLPs 188 (254)
T COG1691 117 GGKVGVLSAGTSDLPVAEEAAVTAEELGVEVQKVYD-VG---VAGIHRLLSALKRLKIEDADVLIVVAG----MEGALPS 188 (254)
T ss_pred CceEEEEecCCCCcchHHHHHHHHHHhCceEEEEEe-ec---cchHHhhhhHHHHHHhhCCCeEEEEcc----cccchHH
Confidence 3578899999865 67777788888986443333 21 112335555 3445556775544321 1267999
Q ss_pred HHHHHcCCCcccceeEEEEe
Q psy9408 99 MLAALLNWPQATFASKIVLK 118 (219)
Q Consensus 99 ~lA~~Lg~p~vt~v~~l~~~ 118 (219)
-+|.+.++|.|.-=+++-+-
T Consensus 189 vvagLvD~PVIavPTsVGYG 208 (254)
T COG1691 189 VVAGLVDVPVIAVPTSVGYG 208 (254)
T ss_pred HHHhccCCCeEecccccccC
Confidence 99999999999777776553
No 143
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=54.86 E-value=1.2e+02 Score=25.16 Aligned_cols=70 Identities=13% Similarity=0.064 Sum_probs=42.1
Q ss_pred HHHHHHHHhCCCCEEEEEecCC--CCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCccc
Q psy9408 38 KEILQIAMAMGVDRAILIETDT--ILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQAT 110 (219)
Q Consensus 38 ~~~lr~~~a~GaD~v~~v~~~~--~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt 110 (219)
+.+-+.|-++|.... .++-+. ....+....+|.++.++ +.+.|++|.-..+. -..-.-+++..+|++.++
T Consensus 46 ~~~~~~A~~lgip~~-~i~~~~~~~~~~~~l~~~l~~~~~~-g~~~vv~G~i~sd~-~~~~~e~v~~~~gl~~~~ 117 (218)
T TIGR03679 46 ELTRLQAEALGIPLV-KIETSGEKEKEVEDLKGALKELKRE-GVEGIVTGAIASRY-QKSRIERICEELGLKVFA 117 (218)
T ss_pred HHHHHHHHHhCCCEE-EEECCCCChHHHHHHHHHHHHHHHc-CCCEEEECCcccHh-HHHHHHHHHHhCCCeEEe
Confidence 444566778898743 333221 22233466666666554 89999999988753 244444666666665543
No 144
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=54.85 E-value=73 Score=27.58 Aligned_cols=62 Identities=11% Similarity=0.070 Sum_probs=40.3
Q ss_pred EEEEEecCcc--hHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEccccc
Q psy9408 27 IIAISCGNKK--CKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSI 89 (219)
Q Consensus 27 V~av~~G~~~--~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~ 89 (219)
-.+..+|+.. ++++...+-+...--.+.-.++.-+++..- +++.+-|++.+||+++.|..+.
T Consensus 109 ~~vfllGgkp~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~-~~i~~~I~~s~pdil~VgmG~P 172 (253)
T COG1922 109 KRVFLLGGKPGVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEE-EAIVERIAASGPDILLVGMGVP 172 (253)
T ss_pred ceEEEecCCHHHHHHHHHHHHHHCCCceEEEecCCCCChhhH-HHHHHHHHhcCCCEEEEeCCCc
Confidence 3445677543 445555555555544444444444565555 7888889999999999999764
No 145
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=54.79 E-value=44 Score=29.42 Aligned_cols=57 Identities=11% Similarity=0.058 Sum_probs=40.4
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccc
Q psy9408 52 AILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATF 111 (219)
Q Consensus 52 v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~ 111 (219)
+-++.-|...++.....+..+++.+.+.++|+.+.+|. . ..-...+++..++|+++-
T Consensus 43 i~lv~~D~~~~p~~a~~~a~~li~~d~v~~iiG~~~s~--~-~~a~~~~~~~~~ip~i~~ 99 (357)
T cd06337 43 VEIIVRDSQSNPNRAGLVAQELILTDKVDLLLAGGTPD--T-TNPVSDQCEANGVPCIST 99 (357)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHhccCccEEEecCCcc--h-hhHHHHHHHHhCCCeEEe
Confidence 44444345789999999999999988899998765542 1 112235788999999874
No 146
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=54.79 E-value=1.3e+02 Score=25.49 Aligned_cols=96 Identities=18% Similarity=0.106 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecC--CCCCHHHHHHHHHHHHHhcCCCEEEEc
Q psy9408 8 EIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETD--TILQSLSVAKLLQVIVKKENPQLVILG 85 (219)
Q Consensus 8 ~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~--~~~d~~~~A~~la~~ik~~~~dlVl~G 85 (219)
.+..+.|..|++. |.+|+.++-++.. ....-..|.+- +.+... ..+........+...+++.+||+|++-
T Consensus 14 ~~~~~l~~~L~~~---g~~v~v~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dii~~~ 85 (355)
T cd03819 14 RGTLELARALVER---GHRSLVASAGGRL----VAELEAEGSRH-IKLPFISKNPLRILLNVARLRRLIREEKVDIVHAR 85 (355)
T ss_pred HHHHHHHHHHHHc---CCEEEEEcCCCch----HHHHHhcCCeE-EEccccccchhhhHHHHHHHHHHHHHcCCCEEEEC
Confidence 5667788888764 4788877755432 22233346652 222211 122334455677888889999999985
Q ss_pred ccccCCCcCcHHHHHHHHcCCCcccceeEE
Q psy9408 86 KQSIDSDNNQTGQMLAALLNWPQATFASKI 115 (219)
Q Consensus 86 ~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l 115 (219)
... ..-.+...+..++.|++...-+.
T Consensus 86 ~~~----~~~~~~~~~~~~~~~~i~~~h~~ 111 (355)
T cd03819 86 SRA----PAWSAYLAARRTRPPFVTTVHGF 111 (355)
T ss_pred CCc----hhHHHHHHHHhcCCCEEEEeCCc
Confidence 432 12344455667788887655543
No 147
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=54.62 E-value=66 Score=27.91 Aligned_cols=34 Identities=15% Similarity=0.304 Sum_probs=23.2
Q ss_pred hcCCCEEEEcccccCCCcCcHHHHHHHHcCCCccc
Q psy9408 76 KENPQLVILGKQSIDSDNNQTGQMLAALLNWPQAT 110 (219)
Q Consensus 76 ~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt 110 (219)
+.+||+++-+-.-.++..++++. +.+++|+|++.
T Consensus 54 ~~~~d~vf~~lhG~~ge~~~i~~-~le~~gip~~G 87 (296)
T PRK14569 54 ELKPDKCFVALHGEDGENGRVSA-LLEMLEIKHTS 87 (296)
T ss_pred ccCCCEEEEeCCCCCCCChHHHH-HHHHcCCCeeC
Confidence 45788888766655555566654 66888888763
No 148
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=54.61 E-value=47 Score=29.77 Aligned_cols=70 Identities=19% Similarity=0.259 Sum_probs=46.0
Q ss_pred hHHHHHHHHhCCCCEEEEEecCC----C-CC----HHHHHHHHHHHHHhc-C-CCEEEEcccccCCCcCcHHHHHHHHcC
Q psy9408 37 CKEILQIAMAMGVDRAILIETDT----I-LQ----SLSVAKLLQVIVKKE-N-PQLVILGKQSIDSDNNQTGQMLAALLN 105 (219)
Q Consensus 37 ~~~~lr~~~a~GaD~v~~v~~~~----~-~d----~~~~A~~la~~ik~~-~-~dlVl~G~~s~d~~~~~v~~~lA~~Lg 105 (219)
+.-.++-+-.+|+|+++.++-.. + |+ .......+++.+.+. + .++++.|-. ..+-..+-.+|..||
T Consensus 115 ak~vA~ll~~~g~d~vit~DlH~~~i~~~F~ipv~~l~a~~~~~~~~~~~~~~~~~vvVsPD---~gg~~rA~~lA~~lg 191 (332)
T PRK00553 115 SKLVADLLTKAGVTRVTLTDIHSDQTQGFFDIPVDILRTYHVFLSRVLELLGKKDLVVVSPD---YGGVKRARLIAESLE 191 (332)
T ss_pred HHHHHHHHHhcCCCEEEEEeCChHHHHhhcCCCcceeechHHHHHHHHHhcCCCCeEEEEEC---CCcHHHHHHHHHHhC
Confidence 33445555567999999998532 1 22 222345667777542 2 467777654 466789999999999
Q ss_pred CCcc
Q psy9408 106 WPQA 109 (219)
Q Consensus 106 ~p~v 109 (219)
.|++
T Consensus 192 ~~~~ 195 (332)
T PRK00553 192 LPLA 195 (332)
T ss_pred CCEE
Confidence 9975
No 149
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=54.47 E-value=67 Score=29.44 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=13.8
Q ss_pred HHHHHHHhcCCCEEEEcc
Q psy9408 69 LLQVIVKKENPQLVILGK 86 (219)
Q Consensus 69 ~la~~ik~~~~dlVl~G~ 86 (219)
-+.+.+++.+||+++.|.
T Consensus 334 ~l~~~i~~~~pDllig~~ 351 (407)
T TIGR01279 334 RQLQRIRATRPDLVVTGL 351 (407)
T ss_pred HHHHHHHhcCCCEEecCc
Confidence 344677888999999765
No 150
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=53.62 E-value=32 Score=30.70 Aligned_cols=70 Identities=20% Similarity=0.306 Sum_probs=46.4
Q ss_pred hHHHHHHHHhCCCCEEEEEecCC----C-C----CHHHHHHHHHHHHHhcC---CCEEEEcccccCCCcCcHHHHHHHHc
Q psy9408 37 CKEILQIAMAMGVDRAILIETDT----I-L----QSLSVAKLLQVIVKKEN---PQLVILGKQSIDSDNNQTGQMLAALL 104 (219)
Q Consensus 37 ~~~~lr~~~a~GaD~v~~v~~~~----~-~----d~~~~A~~la~~ik~~~---~dlVl~G~~s~d~~~~~v~~~lA~~L 104 (219)
+.-.++-+-++|+|+++.++-.. + + +..-.+..+++.+++.+ .++++.|- |..+-..+..+|.+|
T Consensus 115 ak~~a~lL~~~g~d~vitvD~H~~~i~~~F~~p~~nl~~~p~~~~~l~~~~~~~~~~vvV~p---d~Ga~~~A~~la~~L 191 (323)
T PRK02458 115 AKLVANMLVKAGVDRVLTLDLHAVQVQGFFDIPVDNLFTVPLFAKHYCKKGLSGSDVVVVSP---KNSGIKRARSLAEYL 191 (323)
T ss_pred HHHHHHHHhhcCCCeEEEEecCcHHhhccccCCceEEEEHHHHHHHHHHhCCCCCceEEEEE---CCChHHHHHHHHHHh
Confidence 33444555567999999999532 1 1 22233456777776543 45666654 446788999999999
Q ss_pred CCCcc
Q psy9408 105 NWPQA 109 (219)
Q Consensus 105 g~p~v 109 (219)
|+|+.
T Consensus 192 ~~~~~ 196 (323)
T PRK02458 192 DAPIA 196 (323)
T ss_pred CCCEE
Confidence 99875
No 151
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=53.56 E-value=39 Score=29.32 Aligned_cols=64 Identities=16% Similarity=0.200 Sum_probs=48.0
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHHHHhc----C--CCEEEEcccccCCCcCcHHHHHHHHcCCCcccceeE
Q psy9408 49 VDRAILIETDTILQSLSVAKLLQVIVKKE----N--PQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASK 114 (219)
Q Consensus 49 aD~v~~v~~~~~~d~~~~A~~la~~ik~~----~--~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~ 114 (219)
||++|++.+. ++.+.--|..|++-++++ + .--|+|-..+.|.+ ..+-...|.++|.+++..+=.
T Consensus 143 AdeiyIVtSg-e~MalYAANNI~kgi~k~a~~~~~rLgGiIcNsr~~~~e-~e~v~~fa~~igt~li~~vPr 212 (278)
T COG1348 143 ADEIYIVTSG-EMMALYAANNIAKGIRKYAKTGGVRLGGIICNSRSVDRE-RELVEAFAERLGTQLIHFVPR 212 (278)
T ss_pred CcEEEEEecC-chHHHHHHHHHHHHHHHHhhcCCcceeeEEecCCCcccH-HHHHHHHHHHhCCceEeeccc
Confidence 7999999854 566666667777766665 2 45688888887754 789999999999999866543
No 152
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=53.47 E-value=1.1e+02 Score=24.29 Aligned_cols=78 Identities=8% Similarity=-0.065 Sum_probs=47.4
Q ss_pred EEEEecCcc--hHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcC
Q psy9408 28 IAISCGNKK--CKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLN 105 (219)
Q Consensus 28 ~av~~G~~~--~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg 105 (219)
....+|+.+ .++..+.+.....+--+.-..+..+ .......+.+.|++.+||+|++|..+... -.+......+|+
T Consensus 50 ~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f-~~~~~~~i~~~I~~~~pdiv~vglG~PkQ--E~~~~~~~~~l~ 126 (172)
T PF03808_consen 50 RIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYF-DEEEEEAIINRINASGPDIVFVGLGAPKQ--ERWIARHRQRLP 126 (172)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCC-ChhhHHHHHHHHHHcCCCEEEEECCCCHH--HHHHHHHHHHCC
Confidence 334666542 2333344555444433332323233 34445666777888899999999987642 468888888888
Q ss_pred CCc
Q psy9408 106 WPQ 108 (219)
Q Consensus 106 ~p~ 108 (219)
.++
T Consensus 127 ~~v 129 (172)
T PF03808_consen 127 AGV 129 (172)
T ss_pred CCE
Confidence 883
No 153
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=52.72 E-value=2e+02 Score=28.11 Aligned_cols=96 Identities=14% Similarity=0.101 Sum_probs=54.2
Q ss_pred hHHHHHHHHHhhhhcCCCcEEEE---EEecCcc----hHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCC
Q psy9408 7 DEIAIESAIRLRESSNKIKEIIA---ISCGNKK----CKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENP 79 (219)
Q Consensus 7 D~~Ale~A~~l~e~~g~g~~V~a---v~~G~~~----~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~ 79 (219)
|...++.+.+...+.| ..+.+ .++.|.. ..+.++++..+|+|.+.+.+.-....|..+...+.++-++.+.
T Consensus 121 d~~n~~~~i~~~k~~G--~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~~i 198 (596)
T PRK14042 121 DARNLKVAIDAIKSHK--KHAQGAICYTTSPVHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQATGL 198 (596)
T ss_pred chHHHHHHHHHHHHcC--CEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhhcCC
Confidence 4455666666666654 34333 3444432 3356788899999977765543467888888877777655543
Q ss_pred CEEEEcccccCCCcCcHHHHH-HHHcCCC
Q psy9408 80 QLVILGKQSIDSDNNQTGQML-AALLNWP 107 (219)
Q Consensus 80 dlVl~G~~s~d~~~~~v~~~l-A~~Lg~p 107 (219)
.+=+=++ +..|-.++-.+ |...|+-
T Consensus 199 pi~~H~H---nt~Gla~an~laAieaGad 224 (596)
T PRK14042 199 PVHLHSH---STSGLASICHYEAVLAGCN 224 (596)
T ss_pred EEEEEeC---CCCCcHHHHHHHHHHhCCC
Confidence 3333333 32333455544 4444544
No 154
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=52.70 E-value=79 Score=29.11 Aligned_cols=68 Identities=22% Similarity=0.213 Sum_probs=46.2
Q ss_pred CcEEEEEEecCcc----hHHHHHHHHhCCCCEEEEEecCCCC---------------CH----------HHHHHHHHHHH
Q psy9408 24 IKEIIAISCGNKK----CKEILQIAMAMGVDRAILIETDTIL---------------QS----------LSVAKLLQVIV 74 (219)
Q Consensus 24 g~~V~av~~G~~~----~~~~lr~~~a~GaD~v~~v~~~~~~---------------d~----------~~~A~~la~~i 74 (219)
|.+|+++++-.+. .+..-+.|..+|+.+.++++-...+ .- ...+..|.+++
T Consensus 23 g~~V~av~id~Gq~~~e~~~a~~~a~~lGi~~~~viD~~~ef~~~~~~~~i~~n~~y~~~Y~l~t~laR~li~~~l~~~A 102 (394)
T TIGR00032 23 GYEVIAYTADVGQPEEDIDAIPEKALEYGAENHYTIDAREEFVKDYGFAAIQANAFYEGTYPLSTALARPLIAKKLVEAA 102 (394)
T ss_pred CCEEEEEEEecCCChHHHHHHHHHHHHhCCCeEEEEeCHHHHHHhhchhhhcCCccccCcccccchhhHHHHHHHHHHHH
Confidence 3689999886432 3334467888999767776642111 00 35666778888
Q ss_pred HhcCCCEEEEcccccCC
Q psy9408 75 KKENPQLVILGKQSIDS 91 (219)
Q Consensus 75 k~~~~dlVl~G~~s~d~ 91 (219)
++.+.+.|..|.+..+.
T Consensus 103 ~~~G~~~Ia~G~t~~gn 119 (394)
T TIGR00032 103 KKEGANAVAHGCTGKGN 119 (394)
T ss_pred HHcCCCEEEECccCCcc
Confidence 88999999999987643
No 155
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=52.59 E-value=86 Score=28.89 Aligned_cols=86 Identities=22% Similarity=0.267 Sum_probs=54.8
Q ss_pred HHhhhhcCCCcEEEEEEec--Cc--chHHHHHHHHhCCCCEEEEEecCC------------------C-------CCHHH
Q psy9408 15 IRLRESSNKIKEIIAISCG--NK--KCKEILQIAMAMGVDRAILIETDT------------------I-------LQSLS 65 (219)
Q Consensus 15 ~~l~e~~g~g~~V~av~~G--~~--~~~~~lr~~~a~GaD~v~~v~~~~------------------~-------~d~~~ 65 (219)
..|+++. +.+|+++++- .+ +.+..-++|+..||.+.++++-.. + ..-..
T Consensus 15 ~~L~e~~--~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~~~~i~~aI~anA~Yeg~YpL~tsl~Rpl 92 (388)
T PF00764_consen 15 KWLKEEG--GYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDARDEFAEDYIFPAIKANALYEGRYPLSTSLARPL 92 (388)
T ss_dssp HHHHHTT--TEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-HHHHHHHTHHHHHHTT--BTTTB--CCCCHHHH
T ss_pred HHHHhhc--CceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchHHHHHHHHHHHHHHHHHHhCCCccccccchHHH
Confidence 4567763 4799998874 33 335556679999999999998410 0 12336
Q ss_pred HHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHc
Q psy9408 66 VAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALL 104 (219)
Q Consensus 66 ~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~L 104 (219)
+|+.+.+++++.+.++|.=|+|..+ +.|+=.-++.+.
T Consensus 93 Ia~~~v~~A~~~ga~~vaHG~TgkG--NDqvRFe~~~~a 129 (388)
T PF00764_consen 93 IAKKLVEVAREEGADAVAHGCTGKG--NDQVRFELSIRA 129 (388)
T ss_dssp HHHHHHHHHHHHT-SEEE----TTS--SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCeEEeccCCcCC--CchhHHHHHHHH
Confidence 7888889999999999998888754 457766666653
No 156
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=52.49 E-value=1.8e+02 Score=26.26 Aligned_cols=64 Identities=14% Similarity=0.208 Sum_probs=41.3
Q ss_pred hHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHH
Q psy9408 37 CKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAAL 103 (219)
Q Consensus 37 ~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~ 103 (219)
..+.++.+..+|+|++++.+.-....|..+.+.+..+.+..+ +-+|-..-+..+-.++-.+|+.
T Consensus 143 l~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~~~---~~l~~H~Hnd~GlA~AN~laA~ 206 (363)
T TIGR02090 143 LIKVFKRAEEAGADRINIADTVGVLTPQKMEELIKKLKENVK---LPISVHCHNDFGLATANSIAGV 206 (363)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhcccC---ceEEEEecCCCChHHHHHHHHH
Confidence 344567788999999888775446799999998888866544 3333333333344455555544
No 157
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=52.27 E-value=24 Score=28.28 Aligned_cols=45 Identities=13% Similarity=-0.044 Sum_probs=30.7
Q ss_pred CCHHHH---HHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 61 LQSLSV---AKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 61 ~d~~~~---A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
.+|..+ ++.+++.+++.++|+|++-.. .+-.++..+|..||+|++
T Consensus 31 ~~p~~~~~~~~~la~~~~~~~~d~Ivgv~~----~Gi~~a~~la~~l~~p~~ 78 (175)
T PRK02304 31 ADPEAFREVIDALVERYKDADIDKIVGIEA----RGFIFGAALAYKLGIGFV 78 (175)
T ss_pred cCHHHHHHHHHHHHHHhccCCCCEEEEEcc----chHHHHHHHHHHhCCCEE
Confidence 355544 444444454457899886543 356799999999999986
No 158
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=52.07 E-value=88 Score=26.85 Aligned_cols=36 Identities=19% Similarity=0.151 Sum_probs=18.2
Q ss_pred HHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 73 IVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 73 ~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
.+++.++|+||.......+..+.+ +.+.+++|+|++
T Consensus 51 ~~~~~~~D~v~~~~~g~~~~~~~~-~~~le~~gi~~~ 86 (304)
T PRK01372 51 QLKELGFDRVFNALHGRGGEDGTI-QGLLELLGIPYT 86 (304)
T ss_pred HhccCCCCEEEEecCCCCCCccHH-HHHHHHcCCCcc
Confidence 344556777776432222222333 345566677765
No 159
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=52.02 E-value=1.2e+02 Score=23.92 Aligned_cols=82 Identities=11% Similarity=0.129 Sum_probs=49.8
Q ss_pred hHHHHHHHHHhhhhcCCCcEEEEEEecCc-------chHHHHHHHHhCCCCEEEE--EecCC-CCCHHHHH-----HHHH
Q psy9408 7 DEIAIESAIRLRESSNKIKEIIAISCGNK-------KCKEILQIAMAMGVDRAIL--IETDT-ILQSLSVA-----KLLQ 71 (219)
Q Consensus 7 D~~Ale~A~~l~e~~g~g~~V~av~~G~~-------~~~~~lr~~~a~GaD~v~~--v~~~~-~~d~~~~A-----~~la 71 (219)
...++..+.++.... +.+|.++++... ..+..-+.+..+|.+-.++ ..+.. .......+ ..+.
T Consensus 12 S~vl~~l~~~~~~~~--~~~v~~v~id~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~r~~~l~ 89 (185)
T cd01992 12 SMALLHLLSELKPRL--GLRLVAVHVDHGLRPESDEEAAFVADLCAKLGIPLYILVVALAPKPGGNLEAAAREARYDFFA 89 (185)
T ss_pred HHHHHHHHHHHHHHc--CCcEEEEEecCCCCchHHHHHHHHHHHHHHcCCcEEEEeeccccCCCCCHHHHHHHHHHHHHH
Confidence 334555555555443 358999988643 1223334456789866554 11111 33444444 5666
Q ss_pred HHHHhcCCCEEEEcccccC
Q psy9408 72 VIVKKENPQLVILGKQSID 90 (219)
Q Consensus 72 ~~ik~~~~dlVl~G~~s~d 90 (219)
+++++.+++.|++|+...|
T Consensus 90 ~~a~~~~~~~i~~Gh~~dD 108 (185)
T cd01992 90 EIAKEHGADVLLTAHHADD 108 (185)
T ss_pred HHHHHcCCCEEEEcCCcHH
Confidence 7788889999999999865
No 160
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=51.88 E-value=33 Score=30.39 Aligned_cols=47 Identities=15% Similarity=0.292 Sum_probs=30.4
Q ss_pred HHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEccccc
Q psy9408 38 KEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSI 89 (219)
Q Consensus 38 ~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~ 89 (219)
.+.++++.+.|+|-+|++++-..++.+ ..||+-+ .+.|+||.|++-.
T Consensus 197 ~~~v~~Lr~~gvD~II~LsH~g~~~~d---~~lA~~v--~gIDvIigGHsH~ 243 (313)
T cd08162 197 QPSIDALTAQGINKIILLSHLQQISIE---QALAALL--SGVDVIIAGGSNT 243 (313)
T ss_pred HHHHHHHHHCCCCEEEEEecccccchH---HHHHhcC--CCCCEEEeCCCCc
Confidence 345566667899999999975334332 3343332 2689999998754
No 161
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=51.65 E-value=34 Score=28.06 Aligned_cols=58 Identities=10% Similarity=0.051 Sum_probs=39.8
Q ss_pred CCCEEEEEecCC-CCCHH---HHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 48 GVDRAILIETDT-ILQSL---SVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 48 GaD~v~~v~~~~-~~d~~---~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
|-...+.++-.. ..+|. .++..+++.++..++|.|+.-... +--++..+|..||.|++
T Consensus 39 G~~s~~yiD~~~~~~~p~~~~~i~~~la~~~~~~~~d~I~g~~~~----GiplA~~vA~~l~~p~v 100 (187)
T PRK13810 39 GKKSKYYIDIKKASTDPKTLKLIARQAALRIKEMDVDTVAGVELG----GVPLATAVSLETGLPLL 100 (187)
T ss_pred CCcCCEEEECchhcCCHHHHHHHHHHHHHHhccCCCCEEEEEccc----hHHHHHHHHHHhCCCEE
Confidence 555556665433 33554 566677777777789998875543 45689999999999977
No 162
>PRK08862 short chain dehydrogenase; Provisional
Probab=51.62 E-value=1.4e+02 Score=24.63 Aligned_cols=73 Identities=10% Similarity=0.064 Sum_probs=44.4
Q ss_pred HHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhc--CCCEEEEcc
Q psy9408 9 IAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKE--NPQLVILGK 86 (219)
Q Consensus 9 ~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~--~~dlVl~G~ 86 (219)
-..+.|++|+++ |.+|+.+.-.....++..++....|.+-..+.. | ..+.+.+.+.+.++.++. .+|+++...
T Consensus 17 IG~aia~~la~~---G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~-D-~~~~~~~~~~~~~~~~~~g~~iD~li~na 91 (227)
T PRK08862 17 LGRTISCHFARL---GATLILCDQDQSALKDTYEQCSALTDNVYSFQL-K-DFSQESIRHLFDAIEQQFNRAPDVLVNNW 91 (227)
T ss_pred HHHHHHHHHHHC---CCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEc-c-CCCHHHHHHHHHHHHHHhCCCCCEEEECC
Confidence 455678888875 467766544333333444445455655333322 2 357788888888887774 489888765
No 163
>TIGR00615 recR recombination protein RecR. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=51.51 E-value=85 Score=26.10 Aligned_cols=70 Identities=16% Similarity=0.210 Sum_probs=49.0
Q ss_pred CCCHhhHHHHHHHHHhhhhcCCCcEEEEE--------EecCcc--hHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHH
Q psy9408 2 SINPFDEIAIESAIRLRESSNKIKEIIAI--------SCGNKK--CKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQ 71 (219)
Q Consensus 2 ~iNp~D~~Ale~A~~l~e~~g~g~~V~av--------~~G~~~--~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la 71 (219)
|=||.|..++|..-..+- .-.++ -+||++ .+..+...-.-++.++|+..++ ..+.++||.-|+
T Consensus 84 VE~~~Dv~aiE~~~~y~G------~YhVL~G~iSPldgigp~~l~i~~L~~Ri~~~~v~EVIlAt~~-tvEGe~Ta~yi~ 156 (195)
T TIGR00615 84 VEDPKDVFALEKTKEFRG------RYHVLGGHISPLDGIGPEDLTIAALLKRLQEESVKEVILATNP-TVEGEATALYIA 156 (195)
T ss_pred ECCHHHHHHHHhhCccce------EEEEccCccCccCCCChhhcCHHHHHHHHhcCCCcEEEEeCCC-CchHHHHHHHHH
Confidence 347899999998755542 33444 355543 3445555555679999998854 678899999999
Q ss_pred HHHHhcC
Q psy9408 72 VIVKKEN 78 (219)
Q Consensus 72 ~~ik~~~ 78 (219)
+.++..+
T Consensus 157 ~~lk~~~ 163 (195)
T TIGR00615 157 RLLQPFG 163 (195)
T ss_pred HHhhhcC
Confidence 9998643
No 164
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=51.47 E-value=1.2e+02 Score=26.12 Aligned_cols=88 Identities=19% Similarity=0.130 Sum_probs=48.8
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHH-hCCCCEEEEEecCC--CCC----------HHHHHHHHHHHHHh
Q psy9408 10 AIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAM-AMGVDRAILIETDT--ILQ----------SLSVAKLLQVIVKK 76 (219)
Q Consensus 10 Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~-a~GaD~v~~v~~~~--~~d----------~~~~A~~la~~ik~ 76 (219)
++..|..|.++ |.+|++++ ++.... .... .+|.+ ++.+.... ... .......+.+++++
T Consensus 17 ~~~La~~L~~~---g~eV~vv~-~~~~~~---~~~~~~~g~~-~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~i~~ 88 (348)
T TIGR01133 17 ALAVAEELIKR---GVEVLWLG-TKRGLE---KRLVPKAGIE-FYFIPVGGLRRKGSFRLIKTPLKLLKAVFQARRILKK 88 (348)
T ss_pred HHHHHHHHHhC---CCEEEEEe-CCCcch---hcccccCCCc-eEEEeccCcCCCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34677777765 47898885 332211 1111 24543 44444322 111 12344567788999
Q ss_pred cCCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 77 ENPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 77 ~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
.+||+|++-.. .....+..++..++.|.+
T Consensus 89 ~~pDvVi~~~~----~~~~~~~~~~~~~~~p~v 117 (348)
T TIGR01133 89 FKPDAVIGFGG----YVSGPAGLAAKLLGIPLF 117 (348)
T ss_pred cCCCEEEEcCC----cccHHHHHHHHHcCCCEE
Confidence 99999998532 122344445777888886
No 165
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=51.05 E-value=1.2e+02 Score=27.39 Aligned_cols=76 Identities=18% Similarity=0.188 Sum_probs=42.8
Q ss_pred CcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCC---CC---------CHH----HHHHHHHHHHHhcCCCEEEEccc
Q psy9408 24 IKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDT---IL---------QSL----SVAKLLQVIVKKENPQLVILGKQ 87 (219)
Q Consensus 24 g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~---~~---------d~~----~~A~~la~~ik~~~~dlVl~G~~ 87 (219)
|.+| +|..++......++-+..+|.+-+....+-. .+ ++. .--..+.+.+++.+||+++.+.
T Consensus 286 gkrv-~I~~~~~~~~~~~~~l~elG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdl~ig~~- 363 (406)
T cd01967 286 GKKV-IIYTGGARSWHVIAALRELGMEVVAAGYEFGHDDDYERIRKILDEGTLLVDDYNDLELEELVEKLKPDLILSGI- 363 (406)
T ss_pred CCEE-EEEccCcchHHHHHHHHHcCCEEEEEEEecCCHHHHHHHHhcCCCCcEEEeCCCHHHHHHHHHhcCCCEEEeCC-
Confidence 3344 4454554445555666668887554443210 00 000 0012455567778999999543
Q ss_pred ccCCCcCcHHHHHHHHcCCCcc
Q psy9408 88 SIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 88 s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
..-.+|.++|+|++
T Consensus 364 --------~~~~~a~~~gip~~ 377 (406)
T cd01967 364 --------KEKYVAQKLGIPFL 377 (406)
T ss_pred --------cchHHHHhcCCCEE
Confidence 34578899999995
No 166
>KOG3332|consensus
Probab=50.97 E-value=49 Score=28.29 Aligned_cols=59 Identities=22% Similarity=0.346 Sum_probs=43.3
Q ss_pred EEEEEEecCc------chHHHHHHHHhCCCC--EEEEEecC-------CCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy9408 26 EIIAISCGNK------KCKEILQIAMAMGVD--RAILIETD-------TILQSLSVAKLLQVIVKKENPQLVIL 84 (219)
Q Consensus 26 ~V~av~~G~~------~~~~~lr~~~a~GaD--~v~~v~~~-------~~~d~~~~A~~la~~ik~~~~dlVl~ 84 (219)
.+-+++-|.. ..+|..|.|.-+|.+ .++.++.+ ..+|++.+++.|-+.+...+.+.|++
T Consensus 69 ~iLClSnGN~dg~G~iR~kEL~ra~~~lgi~~s~v~~l~~~~f~Dg~~~~Wd~~~v~~~l~~~ie~~~~~~iiT 142 (247)
T KOG3332|consen 69 HILCLSNGNADGLGKIREKELHRACAVLGIPLSNVVVLDTPFFQDGPGEDWDPDAVASILLQHIEVLNIDTIIT 142 (247)
T ss_pred EEEEecCCCccccchHHHHHHHHHHHHHCCchhheEEecCCcCCCCcccccCHHHHHHHHHHHHHccCccEEEE
Confidence 4555554432 245667778888975 67777643 15899999999999999999998885
No 167
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=50.57 E-value=1e+02 Score=28.81 Aligned_cols=77 Identities=17% Similarity=0.252 Sum_probs=48.7
Q ss_pred CCHhhHHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCC--EEEEEecCCCCCHHHHHHHHHHHHHhcCCC
Q psy9408 3 INPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVD--RAILIETDTILQSLSVAKLLQVIVKKENPQ 80 (219)
Q Consensus 3 iNp~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD--~v~~v~~~~~~d~~~~A~~la~~ik~~~~d 80 (219)
..|.|+..|+.|.+..++ | -+..+.+|+++ ...+.+-..|.| ++=+++ ... +...+..-..++++.+.|
T Consensus 182 ~~~ed~~vl~Aa~~a~~~-~---~~~~iLvG~~~--~I~~~~~~~g~~~~~~eIi~-~~~--~~~s~~~a~~lv~~G~aD 252 (466)
T PRK08190 182 VHPCDAESLRGALEAAEA-G---LIEPVLVGPEA--KIRAAAEEAGLDLSGVRIVD-VPH--SHAAAARAVALARAGEVE 252 (466)
T ss_pred EcCCCHHHHHHHHHHHHc-C---CeeEEEECCHH--HHHHHHHHcCCCcCCCEEEC-CCC--CHHHHHHHHHHHHCCCCC
Confidence 467899999999988776 2 36778899853 333334455643 222222 211 233345556788888999
Q ss_pred EEEEcccc
Q psy9408 81 LVILGKQS 88 (219)
Q Consensus 81 lVl~G~~s 88 (219)
.++.|..+
T Consensus 253 ~~v~G~~~ 260 (466)
T PRK08190 253 ALMKGSLH 260 (466)
T ss_pred EEEeCCCC
Confidence 99998544
No 168
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=50.48 E-value=33 Score=28.13 Aligned_cols=42 Identities=14% Similarity=0.146 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhc--CCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 64 LSVAKLLQVIVKKE--NPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 64 ~~~A~~la~~ik~~--~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
...+..+++.+++. ++|+|++-.. .+-.++..+|..|+.|++
T Consensus 48 ~~~~~~la~~i~~~~~~~d~Ivgi~~----gG~~~A~~la~~L~~~~~ 91 (202)
T PRK00455 48 ALLGRFLAEAIKDSGIEFDVVAGPAT----GGIPLAAAVARALDLPAI 91 (202)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEeccc----CcHHHHHHHHHHhCCCEE
Confidence 45566666666665 7897765433 457799999999999987
No 169
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=50.42 E-value=1.5e+02 Score=27.42 Aligned_cols=73 Identities=26% Similarity=0.325 Sum_probs=50.1
Q ss_pred HhhhhcCCCcEEEEEEe--cC--cchHHHHHHHHhCCCCEEEEEecCC------------------C-C---C---HHHH
Q psy9408 16 RLRESSNKIKEIIAISC--GN--KKCKEILQIAMAMGVDRAILIETDT------------------I-L---Q---SLSV 66 (219)
Q Consensus 16 ~l~e~~g~g~~V~av~~--G~--~~~~~~lr~~~a~GaD~v~~v~~~~------------------~-~---d---~~~~ 66 (219)
.|+++. |.+|+++++ |. ++-+..-++|+.+||.+.++++..+ + | . --.+
T Consensus 23 wL~e~~--~~eVia~tadvGQ~eed~~~i~eKA~~~Ga~~~~viD~reeF~~~yi~~~i~ana~Yeg~YpL~TalaRPLI 100 (403)
T COG0137 23 WLKEKG--GAEVIAVTADVGQPEEDLDAIREKALELGAEEAYVIDAREEFVEDYIFPAIKANALYEGVYPLGTALARPLI 100 (403)
T ss_pred HHHHhc--CceEEEEEEeCCCChHHhHHHHHHHHHhCCceEEEeecHHHHHHHHHHHHHHhhceeeccccccchhhHHHH
Confidence 467764 479988886 43 2234455789999999999988411 0 1 1 1245
Q ss_pred HHHHHHHHHhcCCCEEEEcccccC
Q psy9408 67 AKLLQVIVKKENPQLVILGKQSID 90 (219)
Q Consensus 67 A~~la~~ik~~~~dlVl~G~~s~d 90 (219)
|+.+-+++++.+.+.|-=|+|.-+
T Consensus 101 ak~lVe~A~k~ga~avaHGcTGKG 124 (403)
T COG0137 101 AKKLVEAAKKEGADAVAHGCTGKG 124 (403)
T ss_pred HHHHHHHHHHcCCCEEEecCCCCC
Confidence 666777888889999988888654
No 170
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=50.39 E-value=24 Score=33.96 Aligned_cols=52 Identities=21% Similarity=0.287 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccceeE
Q psy9408 62 QSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASK 114 (219)
Q Consensus 62 d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~ 114 (219)
++..+..+...+.+...| +|++|......+..+---.+|++||+|+++....
T Consensus 188 ~~~~i~~~~~~L~~AkrP-vIl~G~g~~~~~a~~~l~~lae~~g~PV~tt~~g 239 (588)
T TIGR01504 188 TRAQIEKAVEMLNAAERP-LIVAGGGVINADAADLLQEFAELTGVPVIPTLMG 239 (588)
T ss_pred CHHHHHHHHHHHHhCCCc-EEEECCCcchhhhHHHHHHHHHHhCCCeEEcCcc
Confidence 455554444444444566 8888988765555677899999999999876544
No 171
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=50.30 E-value=46 Score=24.60 Aligned_cols=61 Identities=11% Similarity=0.213 Sum_probs=37.2
Q ss_pred EEEecCcchHHHHHHHHhCC--CCEEEEEecCCC-------CC-HHHHHHHHHHHHHhcCCCEEEEccccc
Q psy9408 29 AISCGNKKCKEILQIAMAMG--VDRAILIETDTI-------LQ-SLSVAKLLQVIVKKENPQLVILGKQSI 89 (219)
Q Consensus 29 av~~G~~~~~~~lr~~~a~G--aD~v~~v~~~~~-------~d-~~~~A~~la~~ik~~~~dlVl~G~~s~ 89 (219)
++.+|...=|.++-..++.- .+++|......+ .+ ...-...|.+++++.+.|+|+.|-...
T Consensus 3 VLviGsGgREHAia~~l~~s~~v~~v~~aPGN~G~~~~~~~~~~~~~d~~~l~~~a~~~~idlvvvGPE~p 73 (100)
T PF02844_consen 3 VLVIGSGGREHAIAWKLSQSPSVEEVYVAPGNPGTAELGKNVPIDITDPEELADFAKENKIDLVVVGPEAP 73 (100)
T ss_dssp EEEEESSHHHHHHHHHHTTCTTEEEEEEEE--TTGGGTSEEE-S-TT-HHHHHHHHHHTTESEEEESSHHH
T ss_pred EEEECCCHHHHHHHHHHhcCCCCCEEEEeCCCHHHHhhceecCCCCCCHHHHHHHHHHcCCCEEEECChHH
Confidence 35566655566666666443 566776653210 00 122246788899999999999998763
No 172
>PRK05599 hypothetical protein; Provisional
Probab=50.05 E-value=1.3e+02 Score=24.74 Aligned_cols=71 Identities=10% Similarity=0.054 Sum_probs=44.7
Q ss_pred HHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhc-CCCEEEEcc
Q psy9408 11 IESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKE-NPQLVILGK 86 (219)
Q Consensus 11 le~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~-~~dlVl~G~ 86 (219)
.+.|++++ + | .+|+.+.-..+..++..+++...|.+++..+..| -.|.+.+...+.++.+.. +.|+++...
T Consensus 14 ~aia~~l~-~-g--~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~D-v~d~~~v~~~~~~~~~~~g~id~lv~na 85 (246)
T PRK05599 14 GEIATLLC-H-G--EDVVLAARRPEAAQGLASDLRQRGATSVHVLSFD-AQDLDTHRELVKQTQELAGEISLAVVAF 85 (246)
T ss_pred HHHHHHHh-C-C--CEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcc-cCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 34566666 2 3 5777665444444555555656676666555543 567778888888777665 478888644
No 173
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=50.00 E-value=1.7e+02 Score=25.33 Aligned_cols=76 Identities=14% Similarity=0.110 Sum_probs=47.9
Q ss_pred hHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccceeEEE
Q psy9408 37 CKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIV 116 (219)
Q Consensus 37 ~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~ 116 (219)
+.-..+++..+|.+--....- .-++..+.++|..+.++ +|+|++...----..-...--+|..||.|++-+-..++
T Consensus 23 a~~la~~L~~~G~~v~~~~~V--gD~~~~I~~~l~~a~~r--~D~vI~tGGLGPT~DDiT~e~vAka~g~~lv~~~~al~ 98 (255)
T COG1058 23 AAFLADELTELGVDLARITTV--GDNPDRIVEALREASER--ADVVITTGGLGPTHDDLTAEAVAKALGRPLVLDEEALA 98 (255)
T ss_pred HHHHHHHHHhcCceEEEEEec--CCCHHHHHHHHHHHHhC--CCEEEECCCcCCCccHhHHHHHHHHhCCCcccCHHHHH
Confidence 445677888889774333221 23677788888888775 89888643211111124566788999999987755543
No 174
>COG1540 Uncharacterized proteins, homologs of lactam utilization protein B [General function prediction only]
Probab=49.81 E-value=25 Score=30.20 Aligned_cols=47 Identities=17% Similarity=0.132 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccceeE
Q psy9408 62 QSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASK 114 (219)
Q Consensus 62 d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~ 114 (219)
.-...+.++++.++..+|+|+|+|-..+ ---+.|.+.|.+....+..
T Consensus 121 ~D~~la~av~~av~~~dp~L~l~~Lags------~~~~~a~~~GL~~~~EvFA 167 (252)
T COG1540 121 KDRALADAVAEAVAAFDPSLILMGLAGS------ELLRAAKRAGLPVAEEVFA 167 (252)
T ss_pred cCHHHHHHHHHHHHHhCCCceEEecCcH------HHHHHHHHcCchhHHHHhc
Confidence 3457899999999999999999998643 5678999999998865543
No 175
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=49.77 E-value=89 Score=29.16 Aligned_cols=91 Identities=16% Similarity=0.069 Sum_probs=46.1
Q ss_pred HHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEccc
Q psy9408 8 EIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQ 87 (219)
Q Consensus 8 ~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~ 87 (219)
+.++...+.+++. |.+++++.--+.. ... .-.-+|+.|.+.... ...+.-...|.+++++.++|.|+.|..
T Consensus 12 eia~~ii~a~~~~---Gi~~v~v~~~~d~--~a~---~~~~aD~~~~i~~~~-~~~y~d~~~i~~~a~~~~~D~I~pg~g 82 (472)
T PRK07178 12 EIAVRIVRACAEM---GIRSVAIYSEADR--HAL---HVKRADEAYSIGADP-LAGYLNPRRLVNLAVETGCDALHPGYG 82 (472)
T ss_pred HHHHHHHHHHHHc---CCeEEEEeCCCcc--CCc---cHhhCCEEEEcCCCc-hhhhcCHHHHHHHHHHHCCCEEEeCCC
Confidence 3455555555553 3566655433221 000 011268888876321 111112347778889899999998863
Q ss_pred ccCCCcCcHHHHHHHHcCCCcc
Q psy9408 88 SIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 88 s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
....+ .. .+.+++.+|++++
T Consensus 83 ~lse~-~~-~a~~~e~~Gi~~i 102 (472)
T PRK07178 83 FLSEN-AE-LAEICAERGIKFI 102 (472)
T ss_pred CcccC-HH-HHHHHHHcCCCcc
Confidence 22211 22 2345555665543
No 176
>PRK05370 argininosuccinate synthase; Validated
Probab=49.77 E-value=1.7e+02 Score=27.56 Aligned_cols=89 Identities=18% Similarity=0.169 Sum_probs=61.5
Q ss_pred HHHhhhhcCCCcEEEEEEec--C---cchHHHHHHHHhCCCCEEEEEecCC--------------CC-------------
Q psy9408 14 AIRLRESSNKIKEIIAISCG--N---KKCKEILQIAMAMGVDRAILIETDT--------------IL------------- 61 (219)
Q Consensus 14 A~~l~e~~g~g~~V~av~~G--~---~~~~~~lr~~~a~GaD~v~~v~~~~--------------~~------------- 61 (219)
...|+++ +.+|+++++- . ++.+..-++|...||++.++++--. .|
T Consensus 28 l~wL~e~---~~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDlr~eF~e~~i~aI~anA~Y~~~~e~~Y~l~t~ 104 (447)
T PRK05370 28 LLWMRQK---GAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRAQLVAEGIAAIQCGAFHISTGGVTYFNTTP 104 (447)
T ss_pred HHHHHhc---CCeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEeccHHHHHHHHHHHHHcCCccccccCccccCCCc
Confidence 4567776 3789988864 3 2234667889999999999987311 01
Q ss_pred -CHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCC
Q psy9408 62 -QSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWP 107 (219)
Q Consensus 62 -d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p 107 (219)
.-...|..+.+++++.+.+.|-=|+|-. .+.|+=.-++.+.=.|
T Consensus 105 LaRplia~~lv~~A~~~ga~aIAHG~TGK--GNDQvRFE~~~~aL~P 149 (447)
T PRK05370 105 LGRAVTGTMLVAAMKEDGVNIWGDGSTYK--GNDIERFYRYGLLTNP 149 (447)
T ss_pred chHHHHHHHHHHHHHHhCCcEEEEcCCCC--CCchHHHHHHHHHhCC
Confidence 2345778888888999999998888754 4457777776554444
No 177
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=49.76 E-value=65 Score=24.04 Aligned_cols=52 Identities=15% Similarity=0.024 Sum_probs=21.4
Q ss_pred hHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccc
Q psy9408 37 CKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQS 88 (219)
Q Consensus 37 ~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s 88 (219)
..+.++.+.+.|...||.+..|.+-........+++++++.+-.++-++...
T Consensus 16 ~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~ 67 (110)
T PF04273_consen 16 SPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDG 67 (110)
T ss_dssp -HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----T
T ss_pred CHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCC
Confidence 3455666666677766666543322122233445555555665555555554
No 178
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=49.46 E-value=19 Score=31.77 Aligned_cols=80 Identities=15% Similarity=0.217 Sum_probs=46.2
Q ss_pred cEEEEEEecCcchHHHHHHHH-hCCCCEEE--EEecCCCCCHHHHHH---HHHHHHHhcCCCEEEEcccccCCCcCcHHH
Q psy9408 25 KEIIAISCGNKKCKEILQIAM-AMGVDRAI--LIETDTILQSLSVAK---LLQVIVKKENPQLVILGKQSIDSDNNQTGQ 98 (219)
Q Consensus 25 ~~V~av~~G~~~~~~~lr~~~-a~GaD~v~--~v~~~~~~d~~~~A~---~la~~ik~~~~dlVl~G~~s~d~~~~~v~~ 98 (219)
.++..+.-|.. .+...+.. .+|.+.-+ .+..+...-...++. .+++++++.+||+|++-.. ....-.+.
T Consensus 29 ~~~~~~~tg~h--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiv~~~gd---~~~~la~a 103 (365)
T TIGR00236 29 IDSYVIVTAQH--REMLDQVLDLFHLPPDYDLNIMSPGQTLGEITSNMLEGLEELLLEEKPDIVLVQGD---TTTTLAGA 103 (365)
T ss_pred CCEEEEEeCCC--HHHHHHHHHhcCCCCCeeeecCCCCCCHHHHHHHHHHHHHHHHHHcCCCEEEEeCC---chHHHHHH
Confidence 46666676754 23444433 35654323 333221222334444 4666778889999998742 23344577
Q ss_pred HHHHHcCCCcc
Q psy9408 99 MLAALLNWPQA 109 (219)
Q Consensus 99 ~lA~~Lg~p~v 109 (219)
..|.++|+|++
T Consensus 104 ~aa~~~~ipv~ 114 (365)
T TIGR00236 104 LAAFYLQIPVG 114 (365)
T ss_pred HHHHHhCCCEE
Confidence 88888999976
No 179
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=49.29 E-value=1.6e+02 Score=26.37 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=21.8
Q ss_pred HHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 68 KLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 68 ~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
..+.+.+++.+||+++.+. -.-.+|.++++|++
T Consensus 331 ~~~~~~l~~~~pdl~ig~~---------~~~~~a~~~~~~~~ 363 (398)
T PF00148_consen 331 EEIEELLEELKPDLLIGSS---------HERYLAKKLGIPLI 363 (398)
T ss_dssp HHHHHHHHHHT-SEEEESH---------HHHHHHHHTT--EE
T ss_pred HHHHHHHHhcCCCEEEech---------hhHHHHHHhCCCeE
Confidence 3566677888999998654 46678899966655
No 180
>PLN02371 phosphoglucosamine mutase family protein
Probab=49.22 E-value=1.3e+02 Score=29.16 Aligned_cols=85 Identities=15% Similarity=0.236 Sum_probs=49.3
Q ss_pred CHhhHHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCC-CCCHHHHHHHHHHHHHhcCCC-E
Q psy9408 4 NPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDT-ILQSLSVAKLLQVIVKKENPQ-L 81 (219)
Q Consensus 4 Np~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~-~~d~~~~A~~la~~ik~~~~d-l 81 (219)
||.+.++|+...++..+.+ ..+ ++.+-+. +||+.+++... ..+.+.+...++..+-+..+. .
T Consensus 308 ~P~~~~~l~~l~~~v~~~~--aDl-Gia~DgD-------------aDR~~vvD~~G~~i~gd~l~aLla~~ll~~~~g~~ 371 (583)
T PLN02371 308 NPEDKAAMSATTQAVLANK--ADL-GIIFDTD-------------VDRSAVVDSSGREINRNRLIALMSAIVLEEHPGTT 371 (583)
T ss_pred CCCCHHHHHHHHHHHHhcC--CCE-EEEECCC-------------ccceeEECCCCEEECHHHHHHHHHHHHHHhCCCCE
Confidence 5555666666666555432 232 2233221 57777765332 358888888888776554444 5
Q ss_pred EEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 82 VILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 82 Vl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
|+....++ .+--.+|...|..++
T Consensus 372 VV~~v~sS-----~~l~~ia~~~G~~v~ 394 (583)
T PLN02371 372 IVTDSVTS-----DGLTTFIEKKGGKHH 394 (583)
T ss_pred EEEecccc-----hhHHHHHHHcCCeEE
Confidence 66665553 366777888776553
No 181
>PRK03673 hypothetical protein; Provisional
Probab=49.07 E-value=2.2e+02 Score=26.27 Aligned_cols=72 Identities=6% Similarity=-0.038 Sum_probs=45.0
Q ss_pred HHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccceeEE
Q psy9408 40 ILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKI 115 (219)
Q Consensus 40 ~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l 115 (219)
..+.+..+|++-.....- .-|.+....+|.++.+ ..|+|++.....-+..-.+...+|..+|.|++-+-..+
T Consensus 26 la~~L~~~G~~v~~~~~v--~D~~~~i~~~l~~a~~--~~DlVI~tGGlGpt~dD~t~~avA~a~g~~L~~d~e~~ 97 (396)
T PRK03673 26 LADFFFHQGLPLSRRNTV--GDNLDALVAILRERSQ--HADVLIVNGGLGPTSDDLSALAAATAAGEGLVLHEEWL 97 (396)
T ss_pred HHHHHHHCCCEEEEEEEc--CCCHHHHHHHHHHHhc--cCCEEEEcCCCCCCCcccHHHHHHHHcCCCceeCHHHH
Confidence 445577788774333221 2356677777777654 46766654433334446788889999999988665544
No 182
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=48.68 E-value=1.7e+02 Score=25.72 Aligned_cols=13 Identities=31% Similarity=0.488 Sum_probs=9.0
Q ss_pred hHHHHHHHHhhcC
Q psy9408 204 NVIELIDKLKNEA 216 (219)
Q Consensus 204 ~~~~l~~~L~~~~ 216 (219)
.+++|++.|.++.
T Consensus 288 ~~~eiv~~l~~e~ 300 (307)
T TIGR03151 288 PAKEIIEDIMSEA 300 (307)
T ss_pred cHHHHHHHHHHHH
Confidence 4778888776653
No 183
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=48.66 E-value=74 Score=27.64 Aligned_cols=92 Identities=18% Similarity=0.251 Sum_probs=48.6
Q ss_pred HHHhhhhcCCCcEEEEEEecCcchHHH---HHH-HHhCCCCEEEEEecCCC---CCHHHHHHHHHHHHHhcCCCEEEEcc
Q psy9408 14 AIRLRESSNKIKEIIAISCGNKKCKEI---LQI-AMAMGVDRAILIETDTI---LQSLSVAKLLQVIVKKENPQLVILGK 86 (219)
Q Consensus 14 A~~l~e~~g~g~~V~av~~G~~~~~~~---lr~-~~a~GaD~v~~v~~~~~---~d~~~~A~~la~~ik~~~~dlVl~G~ 86 (219)
.+.|++.. +.++.++.-|....... ..+ ....+.|--..+..+.. .........+.+.+++.+||+|++-.
T Consensus 19 ~~~l~~~~--~~~~~~~~tg~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvV~~~g 96 (363)
T cd03786 19 IRALKKDP--GFELVLVVTGQHYDMEMGVTFFEILFIIKPDYDLLLGSDSQSLGAQTAGLLIGLEAVLLEEKPDLVLVLG 96 (363)
T ss_pred HHHHhcCC--CCCEEEEEeCCCCChhhhHHHHHhhCCCCCCEEEecCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 34455542 46888878785432221 222 22334454222222211 12333445566677888999999853
Q ss_pred cccCCCcCcHHHHHHHHcCCCccc
Q psy9408 87 QSIDSDNNQTGQMLAALLNWPQAT 110 (219)
Q Consensus 87 ~s~d~~~~~v~~~lA~~Lg~p~vt 110 (219)
. ......+...|.++|+|++.
T Consensus 97 ~---~~~~~~~~~aa~~~~iPvv~ 117 (363)
T cd03786 97 D---TNETLAAALAAFKLGIPVAH 117 (363)
T ss_pred C---chHHHHHHHHHHHcCCCEEE
Confidence 1 12223356667778999873
No 184
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=48.65 E-value=1.3e+02 Score=26.78 Aligned_cols=46 Identities=13% Similarity=0.143 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhcCCCEEE-EcccccCCCcCcHHHHHHHHcCCCcccceeE
Q psy9408 65 SVAKLLQVIVKKENPQLVI-LGKQSIDSDNNQTGQMLAALLNWPQATFASK 114 (219)
Q Consensus 65 ~~A~~la~~ik~~~~dlVl-~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~ 114 (219)
.....+.+.+++.++|.|+ +|..|. -+++-.+|..++.|++.=-+.
T Consensus 64 ~~v~~~~~~~~~~~~d~IIavGGGs~----~D~aK~ia~~~~~p~i~VPTt 110 (349)
T cd08550 64 EEVVKALCGAEEQEADVIIGVGGGKT----LDTAKAVADRLDKPIVIVPTI 110 (349)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCcHH----HHHHHHHHHHcCCCEEEeCCc
Confidence 4456667777888999888 665443 348888888899998765554
No 185
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=48.50 E-value=2.3e+02 Score=26.28 Aligned_cols=71 Identities=7% Similarity=0.053 Sum_probs=45.0
Q ss_pred HHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccceeE
Q psy9408 40 ILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASK 114 (219)
Q Consensus 40 ~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~ 114 (219)
..+.+..+|.+-.....- .-|.+.+..+|.++.+ .+|+|++.....-+..-.+...+|..+|.|++-+=..
T Consensus 25 l~~~L~~~G~~v~~~~~v--~Dd~~~i~~~l~~a~~--~~DlVIttGGlgpt~dD~t~eava~~~g~~l~~~~~~ 95 (413)
T TIGR00200 25 LADFLAHQGLPLSRRTTV--GDNPERLKTIIRIASE--RADVLIFNGGLGPTSDDLTAETIATAKGEPLVLNEAW 95 (413)
T ss_pred HHHHHHHCCCeEEEEEEe--CCCHHHHHHHHHHHhc--CCCEEEEcCCCCCCCcccHHHHHHHHhCCCcEECHHH
Confidence 344567789875433221 2245666777776653 5888777655444455677888889999988765433
No 186
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=48.29 E-value=47 Score=29.60 Aligned_cols=35 Identities=14% Similarity=0.268 Sum_probs=29.0
Q ss_pred HhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCccc
Q psy9408 75 KKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQAT 110 (219)
Q Consensus 75 k~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt 110 (219)
+..++|+++.+-....|+.|.+.+++. .+|+|++.
T Consensus 85 ~~~~~d~~f~~~hg~~gEdg~iq~~le-~~gipy~G 119 (347)
T PRK14572 85 SQLDADIAFLGLHGGAGEDGRIQGFLD-TLGIPYTG 119 (347)
T ss_pred cccCcCEEEEecCCCCCCCcHHHHHHH-HcCcCcCC
Confidence 345799999999888888899988887 89999863
No 187
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=47.88 E-value=73 Score=29.26 Aligned_cols=70 Identities=11% Similarity=0.068 Sum_probs=37.4
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEccc
Q psy9408 10 AIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQ 87 (219)
Q Consensus 10 Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~ 87 (219)
++..++.+++. |.+++++...+.. .. .... -+|+.+.+......+.+.-...|.+++++.++|.|+.|..
T Consensus 14 a~~i~~aa~~~---G~~vv~~~~~~d~--~a--~~~~-~ad~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~p~~~ 83 (451)
T PRK08591 14 ALRIIRACKEL---GIKTVAVHSTADR--DA--LHVQ-LADEAVCIGPAPSKKSYLNIPAIISAAEITGADAIHPGYG 83 (451)
T ss_pred HHHHHHHHHHc---CCeEEEEcChhhc--cC--CCHh-HCCEEEEeCCCCcccccCCHHHHHHHHHHhCCCEEEECCC
Confidence 44444444443 4677765443211 00 0011 2788887742211122222356778888899999998763
No 188
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=47.88 E-value=29 Score=33.55 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHHh-cCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccceeE
Q psy9408 62 QSLSVAKLLQVIVKK-ENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASK 114 (219)
Q Consensus 62 d~~~~A~~la~~ik~-~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~ 114 (219)
++..+.++ ++++++ ..| +|++|......+...---.+|++||+|+++....
T Consensus 210 ~~~~v~~~-~~~L~~AkrP-vI~~G~g~~~~~a~~~l~~lae~l~~pV~tt~~g 261 (616)
T PRK07418 210 NPRQINAA-LKLIEEAERP-LLYVGGGAISAGAHAELKELAERFQIPVTTTLMG 261 (616)
T ss_pred CHHHHHHH-HHHHHhCCCC-EEEECCCcCcccHHHHHHHHHHHHCCCEEEccCC
Confidence 45544444 444544 445 8888888764444566678999999999965433
No 189
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=47.61 E-value=1.5e+02 Score=25.63 Aligned_cols=88 Identities=18% Similarity=0.237 Sum_probs=52.1
Q ss_pred EEEEecCcchHHHHHHHH-hCCC-CEEEEEecCCCCCHHHHHHHHHHH-H----------H--hcCCCEEEEcccccCCC
Q psy9408 28 IAISCGNKKCKEILQIAM-AMGV-DRAILIETDTILQSLSVAKLLQVI-V----------K--KENPQLVILGKQSIDSD 92 (219)
Q Consensus 28 ~av~~G~~~~~~~lr~~~-a~Ga-D~v~~v~~~~~~d~~~~A~~la~~-i----------k--~~~~dlVl~G~~s~d~~ 92 (219)
+.+++|.... ++..+ ..+. .++|+.+.........+|+.|++. + . -.+.|.||+|..+.-.+
T Consensus 89 vILT~s~S~~---v~~~l~~~~~~~~V~v~ESrP~~eG~~~a~~L~~~GI~vtli~Dsa~~~~m~~vd~VlvGAd~V~~n 165 (253)
T PRK06372 89 VIGTISSSQV---LKAFISSSEKIKSVYILESRPMLEGIDMAKLLVKSGIDVVLLTDASMCEAVLNVDAVIVGSDSVLYD 165 (253)
T ss_pred EEEEeCCcHH---HHHHHHhcCCCCEEEEecCCCchHHHHHHHHHHHCCCCEEEEehhHHHHHHHhCCEEEECccEEecC
Confidence 6678886433 33332 2223 477777753333445555555532 0 0 01479999999887555
Q ss_pred cC-------cHHHHHHHHcCCCcccceeEEEEe
Q psy9408 93 NN-------QTGQMLAALLNWPQATFASKIVLK 118 (219)
Q Consensus 93 ~~-------~v~~~lA~~Lg~p~vt~v~~l~~~ 118 (219)
|+ ..-+++|...+.|++.-|...++.
T Consensus 166 G~v~nkvGT~~~Al~A~~~~vPv~V~~~s~Kf~ 198 (253)
T PRK06372 166 GGLIHKNGTFPLALCARYLKKPFYSLTISMKIE 198 (253)
T ss_pred CCEeehhhHHHHHHHHHHcCCCEEEEeeccccC
Confidence 43 334678899999988766555554
No 190
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=47.59 E-value=48 Score=28.16 Aligned_cols=42 Identities=19% Similarity=0.173 Sum_probs=25.6
Q ss_pred HHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccc
Q psy9408 41 LQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQS 88 (219)
Q Consensus 41 lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s 88 (219)
++.+.+.|+|-++++.+... +.. ..|++.+ -+.|+||.|++-
T Consensus 164 v~~~~~~~~D~iVvl~H~g~-~~d---~~la~~~--~~iD~IlgGH~H 205 (257)
T cd07406 164 VDELREQGADLIIALTHMRL-PND---KRLAREV--PEIDLILGGHDH 205 (257)
T ss_pred HHHHHhCCCCEEEEEeccCc-hhh---HHHHHhC--CCCceEEecccc
Confidence 44556778999998885432 111 2333333 368899888865
No 191
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=47.57 E-value=39 Score=28.95 Aligned_cols=37 Identities=16% Similarity=0.103 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccc
Q psy9408 68 KLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATF 111 (219)
Q Consensus 68 ~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~ 111 (219)
+.+.+.+++.+||+|++= ..-++...|...|+|++.-
T Consensus 84 ~~~~~~l~~~~pDlVIsD-------~~~~~~~aa~~~giP~i~i 120 (318)
T PF13528_consen 84 RREIRWLREFRPDLVISD-------FYPLAALAARRAGIPVIVI 120 (318)
T ss_pred HHHHHHHHhcCCCEEEEc-------ChHHHHHHHHhcCCCEEEE
Confidence 344566777899999963 3446789999999998743
No 192
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=47.35 E-value=54 Score=30.75 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=23.7
Q ss_pred HHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCc
Q psy9408 69 LLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQ 108 (219)
Q Consensus 69 ~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~ 108 (219)
.+.+.+++.+||+++.|.. .-.+|.++|+|+
T Consensus 395 el~~~i~~~~pDl~ig~~~---------~~~~a~k~gIP~ 425 (466)
T TIGR01282 395 EFEEFVEKLKPDLVGSGIK---------EKYVFQKMGVPF 425 (466)
T ss_pred HHHHHHHHhCCCEEEecCC---------ccceeeecCCCc
Confidence 4456777889999997653 245899999998
No 193
>PRK07206 hypothetical protein; Provisional
Probab=47.14 E-value=1.4e+02 Score=27.00 Aligned_cols=40 Identities=23% Similarity=0.249 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccc
Q psy9408 68 KLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATF 111 (219)
Q Consensus 68 ~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~ 111 (219)
..+.+.+++.++|.|+.|... .-.++.++++.|+.|+..+
T Consensus 60 ~~l~~~~~~~~~d~vi~~~e~----~~~~~a~l~~~l~l~~~~~ 99 (416)
T PRK07206 60 DDLVEFLRKLGPEAIIAGAES----GVELADRLAEILTPQYSND 99 (416)
T ss_pred HHHHHHHHHcCCCEEEECCCc----cHHHHHHHHHhcCCCcCCC
Confidence 466677888999999998532 3557888999999885433
No 194
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=47.09 E-value=88 Score=26.93 Aligned_cols=86 Identities=12% Similarity=0.077 Sum_probs=53.7
Q ss_pred HHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCC
Q psy9408 12 ESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDS 91 (219)
Q Consensus 12 e~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~ 91 (219)
..+.+|.++ |.+|++.+.+.... +. +...|...++. + .+|.. .+++++++.++|+|+--....-.
T Consensus 14 ~la~~L~~~---g~~v~~s~~t~~~~-~~---~~~~g~~~v~~---g-~l~~~----~l~~~l~~~~i~~VIDAtHPfA~ 78 (256)
T TIGR00715 14 AIAKGLIAQ---GIEILVTVTTSEGK-HL---YPIHQALTVHT---G-ALDPQ----ELREFLKRHSIDILVDATHPFAA 78 (256)
T ss_pred HHHHHHHhC---CCeEEEEEccCCcc-cc---ccccCCceEEE---C-CCCHH----HHHHHHHhcCCCEEEEcCCHHHH
Confidence 334444443 46888877776431 22 22344444332 1 34543 37788899999999977666544
Q ss_pred CcCcHHHHHHHHcCCCcccce
Q psy9408 92 DNNQTGQMLAALLNWPQATFA 112 (219)
Q Consensus 92 ~~~~v~~~lA~~Lg~p~vt~v 112 (219)
.-.+-+...+..+|+|++-.-
T Consensus 79 ~is~~a~~a~~~~~ipylR~e 99 (256)
T TIGR00715 79 QITTNATAVCKELGIPYVRFE 99 (256)
T ss_pred HHHHHHHHHHHHhCCcEEEEE
Confidence 455677888999999998664
No 195
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiX protein, which functions as a cobalt-chelatase in the anaerobic biosynthesis of cobalamin. It catalyses the insertion of cobalt into sirohydrochlorin. The structure of CbiX from Archaeoglobus fulgidus consists of a central mixed beta-sheet flanked by four alpha-helices, although it is about half the size of other Class II tetrapyrrole chelatases []. The CbiX proteins found in archaea appear to be shorter than those found in eubacteria [].; GO: 0016829 lyase activity, 0046872 metal ion binding, 0009236 cobalamin biosynthetic process; PDB: 2XWQ_C 2DJ5_A 1TJN_A 2XWS_A 3LYH_B 2JH3_D.
Probab=47.03 E-value=27 Score=25.07 Aligned_cols=49 Identities=20% Similarity=0.180 Sum_probs=36.9
Q ss_pred hHHHHHHHHHhhhhcCCCcEEEEEEe--cCcchHHHHHHHHhCCCCEEEEEec
Q psy9408 7 DEIAIESAIRLRESSNKIKEIIAISC--GNKKCKEILQIAMAMGVDRAILIET 57 (219)
Q Consensus 7 D~~Ale~A~~l~e~~g~g~~V~av~~--G~~~~~~~lr~~~a~GaD~v~~v~~ 57 (219)
....-+.|.+|+++.+ ..|....+ +.++..+.++++.+.|+++++++.-
T Consensus 9 ~~~~~~la~~l~~~~~--~~v~~~fle~~~P~l~~~l~~l~~~g~~~ivvvP~ 59 (105)
T PF01903_consen 9 NAELEDLADRLRERLP--VPVEVAFLEFAEPSLEEALERLVAQGARRIVVVPY 59 (105)
T ss_dssp HHHHHHHHHHHHHHTS--SEEEEEESSCCCSCCHHCCHHHHCCTCSEEEEEEE
T ss_pred HHHHHHHHHHHHhhcC--CeEEEEEEecCCCCHHHHHHHHHHcCCCeEEEEee
Confidence 4455667888888753 56655554 5677889999999999999999873
No 196
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=46.95 E-value=1.3e+02 Score=30.90 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=24.5
Q ss_pred HHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 69 LLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 69 ~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
-+.+.+++.+||+++.|.. .-.+|.++|+|++
T Consensus 380 el~~~i~~~~pDLlig~~~---------~~~~a~k~giP~~ 411 (917)
T PRK14477 380 GLLRVMREKMPDLIVAGGK---------TKFLALKTRTPFL 411 (917)
T ss_pred HHHHHHHhcCCCEEEecCc---------hhhHHHHcCCCeE
Confidence 4456677789999997543 3468899999998
No 197
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=46.80 E-value=87 Score=28.88 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=14.0
Q ss_pred HHHHHHHhcCCCEEEEcc
Q psy9408 69 LLQVIVKKENPQLVILGK 86 (219)
Q Consensus 69 ~la~~ik~~~~dlVl~G~ 86 (219)
-+.+.+++.+||+++.|.
T Consensus 351 ~l~~~i~~~~pDllig~~ 368 (427)
T PRK02842 351 RQLDRIRALRPDLVVCGL 368 (427)
T ss_pred HHHHHHHHcCCCEEEccC
Confidence 345677888999999774
No 198
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=46.60 E-value=1.3e+02 Score=24.57 Aligned_cols=75 Identities=13% Similarity=0.135 Sum_probs=45.2
Q ss_pred HhhHHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCC----C------CCHH----HHHHHH
Q psy9408 5 PFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDT----I------LQSL----SVAKLL 70 (219)
Q Consensus 5 p~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~----~------~d~~----~~A~~l 70 (219)
-||.+..-++.+--+++. +.+|..+-+|+-. -+.++.+..+|+.++.++++|. + ++.+ .-+.++
T Consensus 3 ~Y~Rqi~l~G~e~Q~~L~-~s~VlIiG~gglG-~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~ 80 (197)
T cd01492 3 LYDRQIRLWGLEAQKRLR-SARILLIGLKGLG-AEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEAS 80 (197)
T ss_pred hhhHHHHHhCHHHHHHHH-hCcEEEEcCCHHH-HHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHH
Confidence 355554333333333331 3467766666543 5788999999999999999763 1 1212 346677
Q ss_pred HHHHHhcCCCE
Q psy9408 71 QVIVKKENPQL 81 (219)
Q Consensus 71 a~~ik~~~~dl 81 (219)
++.+++..|++
T Consensus 81 ~~~L~~lNp~v 91 (197)
T cd01492 81 LERLRALNPRV 91 (197)
T ss_pred HHHHHHHCCCC
Confidence 77776665544
No 199
>PRK08462 biotin carboxylase; Validated
Probab=46.57 E-value=90 Score=28.68 Aligned_cols=37 Identities=16% Similarity=0.045 Sum_probs=26.3
Q ss_pred CCEEEEEecCCCCCHHHH--HHHHHHHHHhcCCCEEEEccc
Q psy9408 49 VDRAILIETDTILQSLSV--AKLLQVIVKKENPQLVILGKQ 87 (219)
Q Consensus 49 aD~v~~v~~~~~~d~~~~--A~~la~~ik~~~~dlVl~G~~ 87 (219)
||+.+.+... .+...| ...|.+++++.++|.|+.|..
T Consensus 47 ad~~~~~~~~--~~~~~y~~~~~l~~~~~~~~~D~i~pg~g 85 (445)
T PRK08462 47 ADAKICIGGA--KSSESYLNIPAIISAAEIFEADAIFPGYG 85 (445)
T ss_pred CCEEEEeCCC--chhcccCCHHHHHHHHHHcCCCEEEECCC
Confidence 7888887522 222344 467888899999999998863
No 200
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=46.54 E-value=31 Score=33.09 Aligned_cols=49 Identities=18% Similarity=0.250 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHHh-cCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccce
Q psy9408 62 QSLSVAKLLQVIVKK-ENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFA 112 (219)
Q Consensus 62 d~~~~A~~la~~ik~-~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v 112 (219)
++....++ ++.+++ ..| +|++|..........---+||+++|+|+++.-
T Consensus 200 ~~~~~~~~-~~~L~~A~rP-vIl~G~g~~~~~a~~~l~~lae~~~~PV~tt~ 249 (570)
T PRK06725 200 DSMKLREV-AKAISKAKRP-LLYIGGGVIHSGGSEELIEFARENRIPVVSTL 249 (570)
T ss_pred CHHHHHHH-HHHHHcCCCc-EEEECCCccccchHHHHHHHHHHhCCCEEECC
Confidence 44444443 344444 456 88888887544445666789999999998643
No 201
>PRK13947 shikimate kinase; Provisional
Probab=46.33 E-value=15 Score=28.71 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=24.0
Q ss_pred CEEEEcccccCCCcCcHHHHHHHHcCCCccc
Q psy9408 80 QLVILGKQSIDSDNNQTGQMLAALLNWPQAT 110 (219)
Q Consensus 80 dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt 110 (219)
.++++|...+|+ ..++-+||.+||+|++.
T Consensus 3 ~I~l~G~~GsGK--st~a~~La~~lg~~~id 31 (171)
T PRK13947 3 NIVLIGFMGTGK--TTVGKRVATTLSFGFID 31 (171)
T ss_pred eEEEEcCCCCCH--HHHHHHHHHHhCCCEEE
Confidence 478888877765 57999999999999873
No 202
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=46.16 E-value=1.4e+02 Score=27.28 Aligned_cols=97 Identities=22% Similarity=0.198 Sum_probs=53.3
Q ss_pred CCHhh---HHHHHHHHHhhhhcCCCcEEEEEEecC------c---chHHHHHHHHhCCCCEEEEEecCC-CCCHHHHHHH
Q psy9408 3 INPFD---EIAIESAIRLRESSNKIKEIIAISCGN------K---KCKEILQIAMAMGVDRAILIETDT-ILQSLSVAKL 69 (219)
Q Consensus 3 iNp~D---~~Ale~A~~l~e~~g~g~~V~av~~G~------~---~~~~~lr~~~a~GaD~v~~v~~~~-~~d~~~~A~~ 69 (219)
.||++ .+-|..|+++- + +..++++.-|. + .--+-.+.++..|+|-|+-+..-- .....-.|.-
T Consensus 10 yNPfHnGH~y~i~~Ar~~~---~-~d~~i~~msgdf~qRgepai~~k~~r~~~aL~~g~D~VIelP~~~s~q~a~~fa~~ 85 (358)
T COG1323 10 YNPFHNGHQYHINKAREEF---K-GDEIIAVMSGDFTQRGEPAIGHKWERKKMALEGGADLVIELPLERSGQGAPYFATR 85 (358)
T ss_pred cCcccccHHHHHHHHHHhc---c-CCceEEeeecchhhcCCCccccHHHHHhhhhhcCceEEEEcceEEecCCCchhhHH
Confidence 58887 67788876632 2 23455544443 1 123456779999999988765321 1122222222
Q ss_pred HHHHHHhcCCCEEEEcccccCC-CcCcHHHHHHHH
Q psy9408 70 LQVIVKKENPQLVILGKQSIDS-DNNQTGQMLAAL 103 (219)
Q Consensus 70 la~~ik~~~~dlVl~G~~s~d~-~~~~v~~~lA~~ 103 (219)
=..++...++|-|++|..+.|- +.++.+=.+.+.
T Consensus 86 av~il~~l~~~~i~fgse~~~i~~~~~~a~~~~~~ 120 (358)
T COG1323 86 AVRILNALGGDDIAFGSPPMGIMGLGQYAECLAEM 120 (358)
T ss_pred HHHHHHhcCCCeEEEeCCCCchHHHHHHHHHHHhh
Confidence 2334445578888888887443 234444444443
No 203
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=46.06 E-value=17 Score=31.71 Aligned_cols=58 Identities=12% Similarity=0.135 Sum_probs=26.8
Q ss_pred cEEEEEEecCcchHHHHHHHHhCCCCEEEE-Eec---C----C-CC---CHHHHHHHHHHHHHhcCCCEEEEcc
Q psy9408 25 KEIIAISCGNKKCKEILQIAMAMGVDRAIL-IET---D----T-IL---QSLSVAKLLQVIVKKENPQLVILGK 86 (219)
Q Consensus 25 ~~V~av~~G~~~~~~~lr~~~a~GaD~v~~-v~~---~----~-~~---d~~~~A~~la~~ik~~~~dlVl~G~ 86 (219)
---++.++.++ ..+.....|+|-++. +-- . . .. +.-..++.+.+++++..||+|++-+
T Consensus 151 l~T~~yvf~~e----~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~h 220 (268)
T PF09370_consen 151 LFTTAYVFNEE----QARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCH 220 (268)
T ss_dssp -EE--EE-SHH----HHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEE
T ss_pred CeeeeeecCHH----HHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 45566666543 234444669996542 210 0 0 11 3345566667777788999877654
No 204
>PRK03670 competence damage-inducible protein A; Provisional
Probab=45.94 E-value=1.9e+02 Score=24.79 Aligned_cols=70 Identities=10% Similarity=0.031 Sum_probs=43.2
Q ss_pred HHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCccccee
Q psy9408 41 LQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFAS 113 (219)
Q Consensus 41 lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~ 113 (219)
.+.+...|.+-....-- .-|.+.+..+|.++.+ ..+|+||+.....-+..-.+.-.+|..+|.|++-+=.
T Consensus 26 a~~L~~~G~~v~~~~iV--~Dd~~~I~~~l~~a~~-~~~DlVIttGGlGpt~dD~T~eava~a~g~~l~~~~e 95 (252)
T PRK03670 26 AQKLTEKGYWVRRITTV--GDDVEEIKSVVLEILS-RKPEVLVISGGLGPTHDDVTMLAVAEALGRELVLCED 95 (252)
T ss_pred HHHHHHCCCEEEEEEEc--CCCHHHHHHHHHHHhh-CCCCEEEECCCccCCCCCchHHHHHHHhCCCCcCCHH
Confidence 34566788774322111 2245666777766554 3468777655544444467888899999998876544
No 205
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=45.89 E-value=78 Score=25.25 Aligned_cols=37 Identities=16% Similarity=0.163 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 63 SLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 63 ~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
.+..-..+.++. +.++|+|+.|. +...+|.++|.|.+
T Consensus 111 ~~e~~~~i~~~~-~~G~~viVGg~---------~~~~~A~~~gl~~v 147 (176)
T PF06506_consen 111 EEEIEAAIKQAK-AEGVDVIVGGG---------VVCRLARKLGLPGV 147 (176)
T ss_dssp HHHHHHHHHHHH-HTT--EEEESH---------HHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHH-HcCCcEEECCH---------HHHHHHHHcCCcEE
Confidence 444444444443 46799999655 56899999999975
No 206
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=45.69 E-value=57 Score=28.45 Aligned_cols=66 Identities=21% Similarity=0.210 Sum_probs=42.1
Q ss_pred HHHHHHhCCCCEEEEEecCC----C-C----CHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 40 ILQIAMAMGVDRAILIETDT----I-L----QSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 40 ~lr~~~a~GaD~v~~v~~~~----~-~----d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
..+-+-++| |+++.++... + + +....++.|++.+++.-.+.+++| .|..+-.++..+|.+||+|+.
T Consensus 107 ~a~ll~~~~-d~vitvD~H~~~~~~~f~~~~~~l~a~~~la~~i~~~~~~~vvv~---pd~Ga~~~a~~lA~~l~~~~~ 181 (285)
T PRK00934 107 IAKIISAYY-DRIITINIHEPSILEFFPIPFINLDAAPLIAEYIGDKLDDPLVLA---PDKGALELAKEAAEILGCEYD 181 (285)
T ss_pred HHHHHHHhc-CEEEEEcCChHHHcCcCCCcEeEeecHHHHHHHHHhcCCCCEEEE---eCCchHHHHHHHHHHhCCCEE
Confidence 334444667 9999998532 1 1 233446788888854212334444 344667899999999999964
No 207
>PRK09653 eutD phosphotransacetylase; Reviewed
Probab=45.51 E-value=2e+02 Score=25.48 Aligned_cols=39 Identities=26% Similarity=0.353 Sum_probs=26.2
Q ss_pred CHhhHHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHH-HHhCCC
Q psy9408 4 NPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQI-AMAMGV 49 (219)
Q Consensus 4 Np~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~-~~a~Ga 49 (219)
...|+..|++|.++.++ | -+..+.+|+++ .+++ +-.+|.
T Consensus 22 e~~d~~vl~Aa~~a~~e-g---~~~piLvG~~~---~I~~~~~~~g~ 61 (324)
T PRK09653 22 EGEDERVLKAAKRLQKE-G---LVEPILLGNPE---EIRAKAKELGL 61 (324)
T ss_pred CCCCHHHHHHHHHHHHC-C---CceEEEECCHH---HHHHHHHHcCC
Confidence 34699999999998876 3 35677899753 3433 444564
No 208
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=45.49 E-value=1.1e+02 Score=31.02 Aligned_cols=78 Identities=22% Similarity=0.285 Sum_probs=54.2
Q ss_pred CHhhHHHHHHHHHhhhhcCCCcEEEEEEecCcch-----------HHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHH
Q psy9408 4 NPFDEIAIESAIRLRESSNKIKEIIAISCGNKKC-----------KEILQIAMAMGVDRAILIETDTILQSLSVAKLLQV 72 (219)
Q Consensus 4 Np~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~-----------~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~ 72 (219)
+|+.+..+-.|.|+++++ .++-+||.+-.++. .+.++-+-..|+.-+.+..+ .++++|++
T Consensus 258 ~~~~e~liR~a~RlA~~~--~a~~~av~v~~~~~~~~~~~~~~~l~~~~~Lae~lGae~~~l~~~-------dv~~~i~~ 328 (890)
T COG2205 258 SPGSEKLIRRAARLASRL--HAKWTAVYVETPELHRLSEKEARRLHENLRLAEELGAEIVTLYGG-------DVAKAIAR 328 (890)
T ss_pred CCchHHHHHHHHHHHHHh--CCCeEEEEEeccccccccHHHHHHHHHHHHHHHHhCCeEEEEeCC-------cHHHHHHH
Confidence 567888899999999987 36777775544321 12234455678775555432 46788999
Q ss_pred HHHhcCCCEEEEcccccC
Q psy9408 73 IVKKENPQLVILGKQSID 90 (219)
Q Consensus 73 ~ik~~~~dlVl~G~~s~d 90 (219)
+++..+..-|++|.....
T Consensus 329 ya~~~~~TkiViG~~~~~ 346 (890)
T COG2205 329 YAREHNATKIVIGRSRRS 346 (890)
T ss_pred HHHHcCCeeEEeCCCcch
Confidence 999999999999987654
No 209
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=45.43 E-value=71 Score=27.57 Aligned_cols=33 Identities=18% Similarity=0.155 Sum_probs=17.0
Q ss_pred cCCCEEEEcccccCCCcCcHHHHHHHHcCCCccc
Q psy9408 77 ENPQLVILGKQSIDSDNNQTGQMLAALLNWPQAT 110 (219)
Q Consensus 77 ~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt 110 (219)
.++|+|+-......+..+++ +.+.+.+|+|++.
T Consensus 62 ~~~D~v~~~~~g~~~~~~~~-~~~le~~gip~~g 94 (315)
T TIGR01205 62 EGIDVVFPVLHGRYGEDGTI-QGLLELMGIPYTG 94 (315)
T ss_pred CCCCEEEEecCCCCCCCcHH-HHHHHHcCCCccC
Confidence 35676665433333333444 4455666766654
No 210
>PRK08223 hypothetical protein; Validated
Probab=45.36 E-value=94 Score=27.39 Aligned_cols=86 Identities=13% Similarity=0.083 Sum_probs=54.8
Q ss_pred cEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCC----------CCCHH----HHHHHHHHHHHhc-------------
Q psy9408 25 KEIIAISCGNKKCKEILQIAMAMGVDRAILIETDT----------ILQSL----SVAKLLQVIVKKE------------- 77 (219)
Q Consensus 25 ~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~----------~~d~~----~~A~~la~~ik~~------------- 77 (219)
.+|..+-+|+-. -..+..+.+.|+-++.++++|. .++.. .-+.+.++.+++.
T Consensus 28 s~VlIvG~GGLG-s~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~l 106 (287)
T PRK08223 28 SRVAIAGLGGVG-GIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEGI 106 (287)
T ss_pred CCEEEECCCHHH-HHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEeccc
Confidence 578877777654 4678889999999999999863 12222 2344444444433
Q ss_pred ----------CCCEEEEcccccCCCcCcHHHHHHHHcCCCcccc
Q psy9408 78 ----------NPQLVILGKQSIDSDNNQTGQMLAALLNWPQATF 111 (219)
Q Consensus 78 ----------~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~ 111 (219)
++|+|+-+......+++.+--..|..+++|+++.
T Consensus 107 ~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~ 150 (287)
T PRK08223 107 GKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTA 150 (287)
T ss_pred CccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEE
Confidence 4677773332110135566777889999998864
No 211
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=45.20 E-value=25 Score=31.58 Aligned_cols=83 Identities=24% Similarity=0.240 Sum_probs=48.1
Q ss_pred CcEEEEEEecCcchHH---HHHHHHhCCCC--EE--EEEecCC-CCCHHHHHHH---HHHHHHhcCCCEEEEcccccCCC
Q psy9408 24 IKEIIAISCGNKKCKE---ILQIAMAMGVD--RA--ILIETDT-ILQSLSVAKL---LQVIVKKENPQLVILGKQSIDSD 92 (219)
Q Consensus 24 g~~V~av~~G~~~~~~---~lr~~~a~GaD--~v--~~v~~~~-~~d~~~~A~~---la~~ik~~~~dlVl~G~~s~d~~ 92 (219)
+.++..+.-|..-..+ .+......|.+ .- +.+..+. ..-...++.. +.+++++.+||+||.-... .
T Consensus 28 ~~~~~lv~tGqH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pd~vlv~GD~---~ 104 (365)
T TIGR03568 28 DLELQLIVTGMHLSPEYGNTVNEIEKDGFDIDEKIEILLDSDSNAGMAKSMGLTIIGFSDAFERLKPDLVVVLGDR---F 104 (365)
T ss_pred CCcEEEEEeCCCCChhhccHHHHHHHcCCCCCCccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCCc---h
Confidence 3577777777543222 35666655542 22 2233222 2224445544 4456778899988875522 2
Q ss_pred cCcHHHHHHHHcCCCcc
Q psy9408 93 NNQTGQMLAALLNWPQA 109 (219)
Q Consensus 93 ~~~v~~~lA~~Lg~p~v 109 (219)
+.--++..|.+|++|++
T Consensus 105 ~~la~alaA~~~~IPv~ 121 (365)
T TIGR03568 105 EMLAAAIAAALLNIPIA 121 (365)
T ss_pred HHHHHHHHHHHhCCcEE
Confidence 34456888999999987
No 212
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=44.98 E-value=1.8e+02 Score=24.00 Aligned_cols=76 Identities=13% Similarity=0.102 Sum_probs=42.7
Q ss_pred CCHhhHHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy9408 3 INPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLV 82 (219)
Q Consensus 3 iNp~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlV 82 (219)
-|||-...++...+.+++. |.++..+..+....+...+.+.+.++|-+++...+ .+. ..+.. +++.+.-+|
T Consensus 21 ~~~~~~~~~~gi~~~~~~~--g~~~~v~~~~~~~~~~~~~~l~~~~~dgiii~~~~--~~~----~~~~~-~~~~~ipvV 91 (275)
T cd06295 21 SDPFFLSLLGGIADALAER--GYDLLLSFVSSPDRDWLARYLASGRADGVILIGQH--DQD----PLPER-LAETGLPFV 91 (275)
T ss_pred CCchHHHHHHHHHHHHHHc--CCEEEEEeCCchhHHHHHHHHHhCCCCEEEEeCCC--CCh----HHHHH-HHhCCCCEE
Confidence 4677777777777767665 46777666554322233344456789877775422 121 12332 344455666
Q ss_pred EEccc
Q psy9408 83 ILGKQ 87 (219)
Q Consensus 83 l~G~~ 87 (219)
+++..
T Consensus 92 ~~~~~ 96 (275)
T cd06295 92 VWGRP 96 (275)
T ss_pred EECCc
Confidence 66653
No 213
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=44.86 E-value=2e+02 Score=25.93 Aligned_cols=88 Identities=15% Similarity=0.050 Sum_probs=46.3
Q ss_pred HHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccc
Q psy9408 9 IAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQS 88 (219)
Q Consensus 9 ~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s 88 (219)
.++..+.+|++.. ++.+|.+.++.+.. .+.+++....++.. +.+. +|.. ..+..++++.+||+|++-.+.
T Consensus 65 ~~~~l~~~l~~~~-~~~~i~~t~~t~~~-~~~~~~~~~~~~~~-~~~P----~d~~---~~~~~~l~~~~Pd~v~~~~~~ 134 (425)
T PRK05749 65 AAIPLIRALRKRY-PDLPILVTTMTPTG-SERAQALFGDDVEH-RYLP----YDLP---GAVRRFLRFWRPKLVIIMETE 134 (425)
T ss_pred HHHHHHHHHHHhC-CCCcEEEeCCCccH-HHHHHHhcCCCceE-EEec----CCcH---HHHHHHHHhhCCCEEEEEecc
Confidence 4555666666652 34555544444433 34444433333322 2222 2222 577788999999999886442
Q ss_pred cCCCcCcHHHHHHHHcCCCccc
Q psy9408 89 IDSDNNQTGQMLAALLNWPQAT 110 (219)
Q Consensus 89 ~d~~~~~v~~~lA~~Lg~p~vt 110 (219)
. .--....+.+.|+|.+-
T Consensus 135 ~----~~~~l~~~~~~~ip~vl 152 (425)
T PRK05749 135 L----WPNLIAELKRRGIPLVL 152 (425)
T ss_pred h----hHHHHHHHHHCCCCEEE
Confidence 1 11112235678899763
No 214
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=44.72 E-value=85 Score=24.04 Aligned_cols=108 Identities=13% Similarity=0.193 Sum_probs=56.7
Q ss_pred CCHhhHHHHHHHHHhhhhcCCCcEEEEEEec------CcchHHHHHHHHhCCCC-EEEEEecCCCCCHHHHHHHHHHHHH
Q psy9408 3 INPFDEIAIESAIRLRESSNKIKEIIAISCG------NKKCKEILQIAMAMGVD-RAILIETDTILQSLSVAKLLQVIVK 75 (219)
Q Consensus 3 iNp~D~~Ale~A~~l~e~~g~g~~V~av~~G------~~~~~~~lr~~~a~GaD-~v~~v~~~~~~d~~~~A~~la~~ik 75 (219)
.+|....=+..|.+|..+ |. ...+.+|=| ..+++...+.+...|++ ..++++ +...++..-+...+++++
T Consensus 18 ~~~~~~~R~~~a~~L~~~-g~-~~~il~SGg~~~~~~~~ea~~~~~~l~~~gvp~~~I~~e-~~s~~T~ena~~~~~~~~ 94 (155)
T PF02698_consen 18 LSPESRERLDEAARLYKA-GY-APRILFSGGYGHGDGRSEAEAMRDYLIELGVPEERIILE-PKSTNTYENARFSKRLLK 94 (155)
T ss_dssp ---S-HHHHHHHHHHHH--HH-T--EEEE--SSTTHTS-HHHHHHHHHHHT---GGGEEEE-----SHHHHHHHHHHHHH
T ss_pred ccHhHHHHHHHHHHHHhc-CC-CCeEEECCCCCCCCCCCHHHHHHHHHHhcccchheeEcc-CCCCCHHHHHHHHHHHHH
Confidence 457777888999999886 32 234444431 23455666778889965 455555 346789999999999999
Q ss_pred hcCC-CEEEEcccccCCCcCcHHHHHHHHcCCCcccceeEEEE
Q psy9408 76 KENP-QLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIVL 117 (219)
Q Consensus 76 ~~~~-dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~ 117 (219)
+.+. .++|+....- -.=+-+++.+.+.+....+.....
T Consensus 95 ~~~~~~iilVT~~~H----~~Ra~~~~~~~~~~~~~~~~~~~~ 133 (155)
T PF02698_consen 95 ERGWQSIILVTSPYH----MRRARMIFRKVGPDAVFIPAPPPT 133 (155)
T ss_dssp T-SSS-EEEE--CCC----HHHHHHHHHHHH--BTTC-SEEE-
T ss_pred hhcCCeEEEECCHHH----HHHHHHHHHHhCCCCeEEEeccCC
Confidence 8764 6777655432 122447777777776666665543
No 215
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=44.56 E-value=54 Score=28.02 Aligned_cols=48 Identities=17% Similarity=0.112 Sum_probs=28.8
Q ss_pred HHHHHHhCCCCEEEEEecCC-CCC------HHHHHHHHHHHHHhcCCCEEEEccccc
Q psy9408 40 ILQIAMAMGVDRAILIETDT-ILQ------SLSVAKLLQVIVKKENPQLVILGKQSI 89 (219)
Q Consensus 40 ~lr~~~a~GaD~v~~v~~~~-~~d------~~~~A~~la~~ik~~~~dlVl~G~~s~ 89 (219)
.++++-..|+|-++++.+-. ..+ .+..+..|++.+ .+.|+||.|++-.
T Consensus 175 ~v~~lr~~~~D~IIvl~H~g~~~~~~~~~~~~~~~~~la~~~--~~vD~IlgGHsH~ 229 (277)
T cd07410 175 YVPKLRAEGADVVVVLAHGGFERDLEESLTGENAAYELAEEV--PGIDAILTGHQHR 229 (277)
T ss_pred HHHHHHHcCCCEEEEEecCCcCCCcccccCCccHHHHHHhcC--CCCcEEEeCCCcc
Confidence 34445456899999988642 222 223334444333 4789999998753
No 216
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=44.42 E-value=35 Score=30.41 Aligned_cols=37 Identities=19% Similarity=0.263 Sum_probs=27.2
Q ss_pred HHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccceeE
Q psy9408 72 VIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASK 114 (219)
Q Consensus 72 ~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~ 114 (219)
+.+++.+||+|+..... ..+..+|+++|+|+++-...
T Consensus 98 ~~~~~~~pDlvi~d~~~------~~~~~~A~~~giP~v~~~~~ 134 (401)
T cd03784 98 AAARDWGPDLVVADPLA------FAGAVAAEALGIPAVRLLLG 134 (401)
T ss_pred HHhcccCCCEEEeCcHH------HHHHHHHHHhCCCeEEeecc
Confidence 33445689999987643 25678999999998866554
No 217
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=44.41 E-value=2.4e+02 Score=25.41 Aligned_cols=91 Identities=12% Similarity=0.053 Sum_probs=54.5
Q ss_pred HHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHH-hCCCC-EEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcc
Q psy9408 9 IAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAM-AMGVD-RAILIETDTILQSLSVAKLLQVIVKKENPQLVILGK 86 (219)
Q Consensus 9 ~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~-a~GaD-~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~ 86 (219)
..+++..++++.. +..++.-+.+|++...+.+++.. ..+.+ ++.... ..+. ..+.++.+..+.|+++...
T Consensus 247 ~li~a~~~l~~~~-p~~~l~~~iiG~g~~~~~l~~~~~~~~~~~~V~f~G---~v~~----~e~~~~~~~~~~~v~v~~S 318 (407)
T cd04946 247 LIIKALAALAKAR-PSIKIKWTHIGGGPLEDTLKELAESKPENISVNFTG---ELSN----SEVYKLYKENPVDVFVNLS 318 (407)
T ss_pred HHHHHHHHHHHhC-CCceEEEEEEeCchHHHHHHHHHHhcCCCceEEEec---CCCh----HHHHHHHhhcCCCEEEeCC
Confidence 5677888888763 23456666777765556666655 34443 444332 1121 3344555556788888776
Q ss_pred cccCCCcCcHHHHHHHHcCCCccc
Q psy9408 87 QSIDSDNNQTGQMLAALLNWPQAT 110 (219)
Q Consensus 87 ~s~d~~~~~v~~~lA~~Lg~p~vt 110 (219)
.+. +--+..+=|-..|.|+++
T Consensus 319 ~~E---g~p~~llEAma~G~PVIa 339 (407)
T cd04946 319 ESE---GLPVSIMEAMSFGIPVIA 339 (407)
T ss_pred ccc---cccHHHHHHHHcCCCEEe
Confidence 553 334666678889999774
No 218
>KOG1198|consensus
Probab=44.38 E-value=72 Score=28.75 Aligned_cols=59 Identities=19% Similarity=0.353 Sum_probs=32.1
Q ss_pred HHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy9408 12 ESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVI 83 (219)
Q Consensus 12 e~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl 83 (219)
.+|.||+...+ -..|+ +.+.. +.++-+..+|||+++-..+ ..+.+.+.+.. ..++|+||
T Consensus 172 ~~aiQlAk~~~-~~~v~--t~~s~---e~~~l~k~lGAd~vvdy~~------~~~~e~~kk~~-~~~~DvVl 230 (347)
T KOG1198|consen 172 TAAIQLAKHAG-AIKVV--TACSK---EKLELVKKLGADEVVDYKD------ENVVELIKKYT-GKGVDVVL 230 (347)
T ss_pred HHHHHHHHhcC-CcEEE--EEccc---chHHHHHHcCCcEeecCCC------HHHHHHHHhhc-CCCccEEE
Confidence 56788887652 12333 33443 3344455668888775442 33333333333 34799998
No 219
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=44.27 E-value=37 Score=32.40 Aligned_cols=52 Identities=21% Similarity=0.224 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccceeE
Q psy9408 62 QSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASK 114 (219)
Q Consensus 62 d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~ 114 (219)
++..+.++...+.+...| +|++|......+..+.--.+|++||+|+++....
T Consensus 189 ~~~~i~~~~~~L~~A~rP-viv~G~g~~~~~a~~~l~~lae~~~~pV~tt~~~ 240 (563)
T PRK08527 189 NSRQIKKAAEAIKEAKKP-LFYLGGGAILSNASEEIRELVKKTGIPAVETLMA 240 (563)
T ss_pred CHHHHHHHHHHHHcCCCC-EEEECCCccccchHHHHHHHHHHHCCCEEEcccc
Confidence 455444444443333455 8888887765455667789999999999866544
No 220
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=44.03 E-value=2e+02 Score=24.41 Aligned_cols=92 Identities=13% Similarity=0.015 Sum_probs=57.5
Q ss_pred HHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEccc
Q psy9408 8 EIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQ 87 (219)
Q Consensus 8 ~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~ 87 (219)
....+.+..|++. |.+|+.++..+... .........|.. ++.+. ........+...+.+.+++.+||+|.+...
T Consensus 16 ~~~~~l~~~L~~~---~~~v~~i~~~~~~~-~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dvv~~~~~ 89 (358)
T cd03812 16 TFIMNYYRNLDRS---KIQFDFLVTSKEEG-DYDDEIEKLGGK-IYYIP-ARKKNPLKYFKKLYKLIKKNKYDIVHVHGS 89 (358)
T ss_pred HHHHHHHHhcCcc---ceEEEEEEeCCCCc-chHHHHHHcCCe-EEEec-CCCccHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence 3455666667643 47899888876531 223334445554 33333 224456677778888888899999998655
Q ss_pred ccCCCcCcHHHHHHHHcCCCcc
Q psy9408 88 SIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 88 s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
. ...++..++.+++.|.+
T Consensus 90 ~----~~~~~~~~~~~~~~~~~ 107 (358)
T cd03812 90 S----ASGFILLAAKKAGVKVR 107 (358)
T ss_pred c----hhHHHHHHHhhCCCCeE
Confidence 4 24466677777777753
No 221
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=44.01 E-value=1.8e+02 Score=25.24 Aligned_cols=41 Identities=7% Similarity=0.280 Sum_probs=30.8
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEccccc
Q psy9408 49 VDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSI 89 (219)
Q Consensus 49 aD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~ 89 (219)
.++.+++.-....+++.+-.++-.+....+.++|||=+..+
T Consensus 115 t~kpV~lKrG~~~t~~e~l~aaeyi~~~Gn~~viLcERG~t 155 (258)
T TIGR01362 115 TGRIVNVKKGQFLSPWDMKNVVEKVLSTGNKNILLCERGTS 155 (258)
T ss_pred cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 48888988655678888777777776666799999966553
No 222
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=43.92 E-value=59 Score=27.45 Aligned_cols=43 Identities=14% Similarity=0.218 Sum_probs=29.7
Q ss_pred HHhCCCCEEEEEecCCCCCH---HHHHHHHHHHHHhcCCCEEEEcc
Q psy9408 44 AMAMGVDRAILIETDTILQS---LSVAKLLQVIVKKENPQLVILGK 86 (219)
Q Consensus 44 ~~a~GaD~v~~v~~~~~~d~---~~~A~~la~~ik~~~~dlVl~G~ 86 (219)
+.+.....-+++.....+.+ ..=+.+++++|++.+|.+++||+
T Consensus 142 ~~~~~~~~~VLv~H~PP~g~g~~h~GS~alr~~I~~~~P~l~i~GH 187 (224)
T cd07388 142 LWELKDYRKVFLFHTPPYHKGLNEQGSHEVAHLIKTHNPLVVLVGG 187 (224)
T ss_pred HHhCCCCCeEEEECCCCCCCCCCccCHHHHHHHHHHhCCCEEEEcC
Confidence 33444556677775432222 45578899999999999999994
No 223
>PRK00509 argininosuccinate synthase; Provisional
Probab=43.89 E-value=1.3e+02 Score=27.89 Aligned_cols=74 Identities=22% Similarity=0.190 Sum_probs=50.1
Q ss_pred HHhhhhcCCCcEEEEEEecCcc---hHHHHHHHHhCCCCEEEEEecCC-------------C--C-CHH---------HH
Q psy9408 15 IRLRESSNKIKEIIAISCGNKK---CKEILQIAMAMGVDRAILIETDT-------------I--L-QSL---------SV 66 (219)
Q Consensus 15 ~~l~e~~g~g~~V~av~~G~~~---~~~~lr~~~a~GaD~v~~v~~~~-------------~--~-d~~---------~~ 66 (219)
..+++++ |.+|+++++.-+. .+.+-+.|..+|+.+.++++-.. + + .-. ..
T Consensus 20 ~~l~e~l--G~eViavt~d~Gq~~dle~a~~~A~~lGi~~~~viD~~~ef~~~~i~~~i~~n~~y~g~ypl~~~lcr~~i 97 (399)
T PRK00509 20 KWLKETY--GCEVIAFTADVGQGEELEPIREKALKSGASEIYVEDLREEFVRDYVFPAIRANALYEGKYPLGTALARPLI 97 (399)
T ss_pred HHHHHhh--CCeEEEEEEecCCHHHHHHHHHHHHHcCCCeEEEEcCHHHHHHHhHHHHHHhChHhcCcCCCchHHHHHHH
Confidence 3455655 3689999987653 33445678889998777764220 0 1 111 44
Q ss_pred HHHHHHHHHhcCCCEEEEcccccC
Q psy9408 67 AKLLQVIVKKENPQLVILGKQSID 90 (219)
Q Consensus 67 A~~la~~ik~~~~dlVl~G~~s~d 90 (219)
+..|.+++++.+.+.|..|.+..+
T Consensus 98 ~~~l~~~A~~~G~~~IA~G~t~kG 121 (399)
T PRK00509 98 AKKLVEIARKEGADAVAHGCTGKG 121 (399)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcCC
Confidence 777888888899999999999844
No 224
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=43.69 E-value=56 Score=28.32 Aligned_cols=50 Identities=8% Similarity=-0.073 Sum_probs=27.8
Q ss_pred HHHHHHhCCCCEEEEEecCCC-CCH-----HHHHHHHHHHHHhcCCCEEEEccccc
Q psy9408 40 ILQIAMAMGVDRAILIETDTI-LQS-----LSVAKLLQVIVKKENPQLVILGKQSI 89 (219)
Q Consensus 40 ~lr~~~a~GaD~v~~v~~~~~-~d~-----~~~A~~la~~ik~~~~dlVl~G~~s~ 89 (219)
.++++-+.|+|-+|++.+-.. .+- ......||+.+...+.|+||.|++-.
T Consensus 165 ~v~~lk~~~~D~VI~lsH~G~~~~~~~~~~~~~~~~lA~~~~~~giD~IigGHsH~ 220 (285)
T cd07405 165 VVPELKQEKPDIVIAATHMGHYDNGEHGSNAPGDVEMARALPAGGLDLIVGGHSQD 220 (285)
T ss_pred HHHHHHHcCCCEEEEEecccccCCccccccCchHHHHHHhcCCCCCCEEEeCCCCc
Confidence 344444568999998886431 110 01112444444334789999888653
No 225
>PRK07109 short chain dehydrogenase; Provisional
Probab=43.64 E-value=2.3e+02 Score=24.90 Aligned_cols=73 Identities=10% Similarity=0.077 Sum_probs=44.7
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhc-CCCEEEEccc
Q psy9408 10 AIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKE-NPQLVILGKQ 87 (219)
Q Consensus 10 Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~-~~dlVl~G~~ 87 (219)
..+.|.+|+++ |.+|+.+.-.+...++..+++...|.+ +..+..| -.|.+.+..++.++.++. ..|+++....
T Consensus 21 G~~la~~la~~---G~~Vvl~~R~~~~l~~~~~~l~~~g~~-~~~v~~D-v~d~~~v~~~~~~~~~~~g~iD~lInnAg 94 (334)
T PRK07109 21 GRATARAFARR---GAKVVLLARGEEGLEALAAEIRAAGGE-ALAVVAD-VADAEAVQAAADRAEEELGPIDTWVNNAM 94 (334)
T ss_pred HHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEEec-CCCHHHHHHHHHHHHHHCCCCCEEEECCC
Confidence 34566777765 467776655444344445555566765 4344323 467777878777777765 4798886543
No 226
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=43.59 E-value=64 Score=28.13 Aligned_cols=18 Identities=11% Similarity=0.207 Sum_probs=8.4
Q ss_pred HHHHHHHhCCCCEEEEEe
Q psy9408 39 EILQIAMAMGVDRAILIE 56 (219)
Q Consensus 39 ~~lr~~~a~GaD~v~~v~ 56 (219)
...+.+...|+.+++.+.
T Consensus 222 ~aa~~Lk~~GA~~V~~~~ 239 (285)
T PRK00934 222 TAIKILKEQGAKKVYVAC 239 (285)
T ss_pred HHHHHHHHCCCCEEEEEE
Confidence 334444445555554444
No 227
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=43.41 E-value=1.2e+02 Score=25.14 Aligned_cols=81 Identities=17% Similarity=0.148 Sum_probs=53.1
Q ss_pred CCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhc-CCCEEEEcccccCCCcCcHHHHHH
Q psy9408 23 KIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKE-NPQLVILGKQSIDSDNNQTGQMLA 101 (219)
Q Consensus 23 ~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~-~~dlVl~G~~s~d~~~~~v~~~lA 101 (219)
+.++|+|+=--++..+-.-+.+-++|+|.+.++..+. |+ ++.+. .||.||+|.+- .--.+--...
T Consensus 57 p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~A---p~--------~L~~~~~~daiFIGGg~---~i~~ile~~~ 122 (187)
T COG2242 57 PSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDA---PE--------ALPDLPSPDAIFIGGGG---NIEEILEAAW 122 (187)
T ss_pred CCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccc---hH--------hhcCCCCCCEEEECCCC---CHHHHHHHHH
Confidence 3468999876665555566779999999999998542 22 12244 59999999872 2234555555
Q ss_pred HHcCC--CcccceeEEEE
Q psy9408 102 ALLNW--PQATFASKIVL 117 (219)
Q Consensus 102 ~~Lg~--p~vt~v~~l~~ 117 (219)
++|.- -+|.++..++.
T Consensus 123 ~~l~~ggrlV~naitlE~ 140 (187)
T COG2242 123 ERLKPGGRLVANAITLET 140 (187)
T ss_pred HHcCcCCeEEEEeecHHH
Confidence 55544 46777766653
No 228
>PRK13820 argininosuccinate synthase; Provisional
Probab=43.30 E-value=1.2e+02 Score=28.06 Aligned_cols=73 Identities=19% Similarity=0.229 Sum_probs=46.6
Q ss_pred hhhhcCCCc-EEEEEEecCc----chHHHHHHHHhCCCCEEEEEecCCCC------------------------CHHHHH
Q psy9408 17 LRESSNKIK-EIIAISCGNK----KCKEILQIAMAMGVDRAILIETDTIL------------------------QSLSVA 67 (219)
Q Consensus 17 l~e~~g~g~-~V~av~~G~~----~~~~~lr~~~a~GaD~v~~v~~~~~~------------------------d~~~~A 67 (219)
+++.+ |. +|+++++-.. +.+...+.|..+|+ +.++++-...+ .-...+
T Consensus 22 L~e~~--g~~~Viav~vd~g~~~~e~~~a~~~a~~lGi-~~~vvd~~eef~~~~i~~~i~~n~~~~gYpl~~~~cR~~i~ 98 (394)
T PRK13820 22 LKEKY--GYDEVITVTVDVGQPEEEIKEAEEKAKKLGD-KHYTIDAKEEFAKDYIFPAIKANALYEGYPLGTALARPLIA 98 (394)
T ss_pred HHHhc--CCCEEEEEEEECCCChHHHHHHHHHHHHcCC-CEEEEeCHHHHHHHHHHHHHHhCccccCCcCcHHHHHHHHH
Confidence 45655 34 8888877532 23445677889999 55556542111 122345
Q ss_pred HHHHHHHHhcCCCEEEEcccccCCC
Q psy9408 68 KLLQVIVKKENPQLVILGKQSIDSD 92 (219)
Q Consensus 68 ~~la~~ik~~~~dlVl~G~~s~d~~ 92 (219)
..+.+++++.+.+.|..|++..+.|
T Consensus 99 ~~l~e~A~e~G~~~IA~G~t~~gnD 123 (394)
T PRK13820 99 EKIVEVAEKEGASAIAHGCTGKGND 123 (394)
T ss_pred HHHHHHHHHcCCCEEEECCCCCcch
Confidence 5677778888999999999876443
No 229
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=43.19 E-value=55 Score=28.25 Aligned_cols=44 Identities=16% Similarity=0.202 Sum_probs=26.5
Q ss_pred HHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccc
Q psy9408 39 EILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQS 88 (219)
Q Consensus 39 ~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s 88 (219)
+.++++-..|+|-+|++.+-. .+. ...||+.+ .+.|+|+.|++=
T Consensus 173 ~~v~~lr~~~~D~II~l~H~G-~~~---d~~la~~~--~giD~IiggH~H 216 (281)
T cd07409 173 KEADKLKAQGVNKIIALSHSG-YEV---DKEIARKV--PGVDVIVGGHSH 216 (281)
T ss_pred HHHHHHHhcCCCEEEEEeccC-chh---HHHHHHcC--CCCcEEEeCCcC
Confidence 344555556899988888542 221 13333333 368999988864
No 230
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=43.16 E-value=2.3e+02 Score=24.85 Aligned_cols=77 Identities=10% Similarity=0.159 Sum_probs=54.0
Q ss_pred HHHHHHHHHhhhhcCCCcEEEEEEecCcc--------------hHHHHHHHHhCCCCEEEEEecCC---CCCHHHHHHHH
Q psy9408 8 EIAIESAIRLRESSNKIKEIIAISCGNKK--------------CKEILQIAMAMGVDRAILIETDT---ILQSLSVAKLL 70 (219)
Q Consensus 8 ~~Ale~A~~l~e~~g~g~~V~av~~G~~~--------------~~~~lr~~~a~GaD~v~~v~~~~---~~d~~~~A~~l 70 (219)
...|+.+++++++. +...+++++-|.. .++-++.+..+|+|.++++.-+. ..+++..-+
T Consensus 15 q~Li~~~~~~a~~~--~~~~~V~tF~phP~~~~~~~~~~~l~~~~~k~~~l~~~Gvd~~~~~~F~~~~a~ls~e~Fi~-- 90 (288)
T TIGR00083 15 QALLQELKQIAEEK--GLPPAVLLFEPHPSEQFNWLTAPALTPLEDKARQLQIKGVEQLLVVVFDEEFANLSALQFID-- 90 (288)
T ss_pred HHHHHHHHHHHHHh--CCCEEEEEeCCChHHHhCccCCCCCCCHHHHHHHHHHcCCCEEEEeCCCHHHHcCCHHHHHH--
Confidence 45788888888876 3567777776531 14556677789999999998543 467775554
Q ss_pred HHHH-HhcCCCEEEEccccc
Q psy9408 71 QVIV-KKENPQLVILGKQSI 89 (219)
Q Consensus 71 a~~i-k~~~~dlVl~G~~s~ 89 (219)
+++ ++.++.-|++|.-..
T Consensus 91 -~~l~~~l~~~~ivvG~Df~ 109 (288)
T TIGR00083 91 -QLIVKHLHVKFLVVGDDFR 109 (288)
T ss_pred -HHHHhccCCcEEEECCCcc
Confidence 333 446889999998775
No 231
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This entry represents the uncharacterised protein family UPF0271, including LamB. The lam locus of Emericella nidulans (Aspergillus nidulans) consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression []. The exact molecular function of the proteins in this family is unknown.; PDB: 1V6T_A 1XW8_A 2XU2_A 2DFA_A.
Probab=43.12 E-value=44 Score=28.73 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=35.6
Q ss_pred CCCCEEEEEecCC-C----CCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCccc
Q psy9408 47 MGVDRAILIETDT-I----LQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQAT 110 (219)
Q Consensus 47 ~GaD~v~~v~~~~-~----~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt 110 (219)
.|. ++-+|..-. - ..-..+|+++++++++.+|+++|+|-. +..-...|..+|++++.
T Consensus 100 ~g~-~l~hVKPHGALYn~~~~d~~lA~~i~~ai~~~~~~l~l~~~a------gs~~~~~A~~~Gl~~~~ 161 (242)
T PF03746_consen 100 EGV-PLHHVKPHGALYNMAAKDEELARAIAEAIKAFDPDLPLYGLA------GSELEKAAKELGLPVVF 161 (242)
T ss_dssp TT---EEEE---HHHHHHHHH-HHHHHHHHHHHHHH-TT-EEEEET------TSHHHHHHHHCT--EEE
T ss_pred cCC-eeEEecccHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEEcC------CcHHHHHHHHCCCcEEE
Confidence 444 355666322 1 245689999999999999999998875 33677889999998774
No 232
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=42.94 E-value=1.7e+02 Score=28.89 Aligned_cols=85 Identities=13% Similarity=0.133 Sum_probs=57.6
Q ss_pred cEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCC----------CCCH-------HHHHHHHHHHHHhc----------
Q psy9408 25 KEIIAISCGNKKCKEILQIAMAMGVDRAILIETDT----------ILQS-------LSVAKLLQVIVKKE---------- 77 (219)
Q Consensus 25 ~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~----------~~d~-------~~~A~~la~~ik~~---------- 77 (219)
.+|-.+-.|+-. -..++.+++.|+-++.++++|. .|+. ..-|.+.++.+++.
T Consensus 339 ~kVLIvGaGGLG-s~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~~~ 417 (664)
T TIGR01381 339 LKVLLLGAGTLG-CNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQATGHR 417 (664)
T ss_pred CeEEEECCcHHH-HHHHHHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEEee
Confidence 466666666544 3678999999999999999763 1221 12333444444433
Q ss_pred ------------------------------CCCEEEEcccccCCCcCcHHHHHHHHcCCCcccce
Q psy9408 78 ------------------------------NPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFA 112 (219)
Q Consensus 78 ------------------------------~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v 112 (219)
++|+|+...-+. .++.++-.++...+.|+|+.+
T Consensus 418 ~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~--esR~L~n~~c~~~~kplI~aA 480 (664)
T TIGR01381 418 LTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSR--EARWLPTVLCSRHKKIAISAA 480 (664)
T ss_pred eeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCH--HHHHHHHHHHHHhCCCEEEEE
Confidence 356666665543 578899999999999999875
No 233
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=42.91 E-value=3e+02 Score=26.34 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=43.0
Q ss_pred hHHHHHHHHHhhhhcCCCcEEEEEEe----cC----cchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcC
Q psy9408 7 DEIAIESAIRLRESSNKIKEIIAISC----GN----KKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKEN 78 (219)
Q Consensus 7 D~~Ale~A~~l~e~~g~g~~V~av~~----G~----~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~ 78 (219)
+...+..+.+.+.+.| .+|..=.. |. +-..+..+.+..+|+|++++.+.-....|..+.+.+..+.+..+
T Consensus 124 ~l~~~~~~v~~ak~~G--~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~Gad~i~l~DTvG~~~P~~v~~li~~l~~~~~ 201 (524)
T PRK12344 124 NLAMIRDSVAYLKAHG--REVIFDAEHFFDGYKANPEYALATLKAAAEAGADWVVLCDTNGGTLPHEVAEIVAEVRAAPG 201 (524)
T ss_pred HHHHHHHHHHHHHHcC--CeEEEccccccccccCCHHHHHHHHHHHHhCCCCeEEEccCCCCcCHHHHHHHHHHHHHhcC
Confidence 3344455556666553 45532111 21 11345567788999999887654345789999988888776654
No 234
>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=42.89 E-value=86 Score=27.32 Aligned_cols=62 Identities=16% Similarity=0.090 Sum_probs=41.7
Q ss_pred hCCCCEEEEEecCCCCCHHHHHHHHHHHHHhc-----CCCEEEEcccccCCCcCcHHHHHHHHcCCCc
Q psy9408 46 AMGVDRAILIETDTILQSLSVAKLLQVIVKKE-----NPQLVILGKQSIDSDNNQTGQMLAALLNWPQ 108 (219)
Q Consensus 46 a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~-----~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~ 108 (219)
..|..+..+..++ +..++--+.+..+++++. +.|+|+++.++.|...-..+.+|+.+||.+-
T Consensus 37 ~~Gi~~r~~~~~~-e~~~~la~~Aa~~aL~~ag~~~~~Id~li~~t~~~d~~~p~~a~~v~~~Lg~~~ 103 (326)
T PRK05963 37 RTGIRCRRWAAPD-ETLSDLAASAGDMALSDAGIERSDIALTLLATSTPDHLLPPSAPLLAHRLGLQN 103 (326)
T ss_pred ccCCeEEEEcCCC-CCHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCcHHHHHHHHhCCCC
Confidence 4577777666532 334444455555666654 3689999888776555667889999999864
No 235
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=42.85 E-value=1.4e+02 Score=22.80 Aligned_cols=49 Identities=16% Similarity=0.139 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHhhhhcCCCcEEEEEE--ecCcchHHHHHHHHhCCCCEEEEEe
Q psy9408 6 FDEIAIESAIRLRESSNKIKEIIAIS--CGNKKCKEILQIAMAMGVDRAILIE 56 (219)
Q Consensus 6 ~D~~Ale~A~~l~e~~g~g~~V~av~--~G~~~~~~~lr~~~a~GaD~v~~v~ 56 (219)
+.+...+.|.++++.. +..|..-. +..++..+.++++.+.|+++++++-
T Consensus 15 ~~~~~~~la~~l~~~~--~~~v~~afle~~~P~l~~~l~~l~~~G~~~ivVvP 65 (125)
T cd03415 15 FNEDMEEWAAYLERKL--GVPVYLTYNEYAEPNWRDLLNELLSEGYGHIIIAL 65 (125)
T ss_pred HHHHHHHHHHHHHhcc--CCceEEEEeecCCCCHHHHHHHHHHCCCCEEEEeh
Confidence 3444556666676543 33443322 3556688999999999999999884
No 236
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=42.81 E-value=71 Score=28.49 Aligned_cols=70 Identities=19% Similarity=0.261 Sum_probs=43.9
Q ss_pred hHHHHHHHHhCCCCEEEEEecCC----C-C----CHHHHHHHHHHHHHhc-C-CCEEEEcccccCCCcCcHHHHHHHHcC
Q psy9408 37 CKEILQIAMAMGVDRAILIETDT----I-L----QSLSVAKLLQVIVKKE-N-PQLVILGKQSIDSDNNQTGQMLAALLN 105 (219)
Q Consensus 37 ~~~~lr~~~a~GaD~v~~v~~~~----~-~----d~~~~A~~la~~ik~~-~-~dlVl~G~~s~d~~~~~v~~~lA~~Lg 105 (219)
+.-.++-+-++|+|+++.++-.. + + +....+..|++.+.+. + .+.++++- |..+...+..+|.+||
T Consensus 113 ak~va~ll~~~g~d~vitvD~H~~~~~~~f~~p~~~l~~~~~l~~~i~~~~~~~~~vVVsP---D~Ga~~rA~~lA~~L~ 189 (319)
T PRK04923 113 AKVAAKMISAMGADRVLTVDLHADQIQGFFDVPVDNVYASPLLLADIWRAYGTDNLIVVSP---DVGGVVRARAVAKRLD 189 (319)
T ss_pred HHHHHHHHHhcCCCEEEEEeCChHHHHhhcCCCceeeeChHHHHHHHHHhcCCCCCEEEEE---CCchHHHHHHHHHHcC
Confidence 44445555577999999999532 1 1 2223345677777432 2 34555543 4456789999999997
Q ss_pred -CCcc
Q psy9408 106 -WPQA 109 (219)
Q Consensus 106 -~p~v 109 (219)
+|++
T Consensus 190 ~~~~~ 194 (319)
T PRK04923 190 DADLA 194 (319)
T ss_pred CCCEE
Confidence 6653
No 237
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=42.77 E-value=2.4e+02 Score=24.97 Aligned_cols=83 Identities=20% Similarity=0.214 Sum_probs=51.7
Q ss_pred HhhHHHHHHHHHhhhhcCC--CcE-EEEEEecCcchHHHHHHHHhCCCCEEEEEecCCC---CCHHHHHHHHHHHHHhcC
Q psy9408 5 PFDEIAIESAIRLRESSNK--IKE-IIAISCGNKKCKEILQIAMAMGVDRAILIETDTI---LQSLSVAKLLQVIVKKEN 78 (219)
Q Consensus 5 p~D~~Ale~A~~l~e~~g~--g~~-V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~---~d~~~~A~~la~~ik~~~ 78 (219)
|.-...-..|..|++.+.. +.. ..+...|++..++.++++.+.|+++++++.--.. ..+-.+-..+.+.+++..
T Consensus 71 Pl~~~t~~q~~~l~~~l~~~~~~~V~~amry~~P~i~~~l~~l~~~G~~~iv~lPL~PqyS~~t~gs~~~~~~~~l~~~~ 150 (322)
T TIGR00109 71 PLLQITEQQAHALEKRLPNEIDFKVYIAMRYGEPFTEEAVKELLKDGVERAVVLPLYPHFSSSTTGSSFNELAEALKKLR 150 (322)
T ss_pred cHHHHHHHHHHHHHHHhccCCCceEEEeeccCCCCHHHHHHHHHhcCCCeEEEEeCCcccccccHHHHHHHHHHHHHhcc
Confidence 4445555666667766521 123 3567789889999999999999999999985322 233444444445555442
Q ss_pred ---CCEEEEccc
Q psy9408 79 ---PQLVILGKQ 87 (219)
Q Consensus 79 ---~dlVl~G~~ 87 (219)
|++-+.-.-
T Consensus 151 ~~~~~~~~i~~~ 162 (322)
T TIGR00109 151 SLRPTISVIESW 162 (322)
T ss_pred cCCCeEEEeCcc
Confidence 455554433
No 238
>PLN02321 2-isopropylmalate synthase
Probab=42.53 E-value=3.4e+02 Score=26.73 Aligned_cols=71 Identities=17% Similarity=0.064 Sum_probs=44.4
Q ss_pred hHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCC--CEEEEcccccCCCcCcHHHHH-HHHcCCCc
Q psy9408 37 CKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENP--QLVILGKQSIDSDNNQTGQML-AALLNWPQ 108 (219)
Q Consensus 37 ~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~--dlVl~G~~s~d~~~~~v~~~l-A~~Lg~p~ 108 (219)
..+.++.+..+|+|.+.+.+.-....|..+...+..+.+..+. ++.|--+.-.| .+-.++--+ |-..|+-+
T Consensus 242 l~~~~~~a~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~vH~HND-~GlAvANslaAv~AGA~~ 315 (632)
T PLN02321 242 LYRILGEVIKAGATTLNIPDTVGYTLPSEFGQLIADIKANTPGIENVIISTHCQND-LGLSTANTLAGAHAGARQ 315 (632)
T ss_pred HHHHHHHHHHcCCCEEEecccccCCCHHHHHHHHHHHHHhcCCCCCceEEEEeCCC-CCHHHHHHHHHHHhCCCE
Confidence 3456788999999987776543467999999999988776542 34444444333 333444444 33444443
No 239
>PRK13946 shikimate kinase; Provisional
Probab=42.49 E-value=18 Score=29.06 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=23.9
Q ss_pred CCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 79 PQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 79 ~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
..++|+|...+|+ ..++-.||.+||+|++
T Consensus 11 ~~I~l~G~~GsGK--sti~~~LA~~Lg~~~i 39 (184)
T PRK13946 11 RTVVLVGLMGAGK--STVGRRLATMLGLPFL 39 (184)
T ss_pred CeEEEECCCCCCH--HHHHHHHHHHcCCCeE
Confidence 4688889877664 4799999999999976
No 240
>PRK04527 argininosuccinate synthase; Provisional
Probab=42.31 E-value=1.6e+02 Score=27.30 Aligned_cols=91 Identities=7% Similarity=0.037 Sum_probs=54.8
Q ss_pred CcEEEEEEecCcc-----hHHHHHHHHhCCCCEEEEEecCCCC------------------------CHHHHHHHHHHHH
Q psy9408 24 IKEIIAISCGNKK-----CKEILQIAMAMGVDRAILIETDTIL------------------------QSLSVAKLLQVIV 74 (219)
Q Consensus 24 g~~V~av~~G~~~-----~~~~lr~~~a~GaD~v~~v~~~~~~------------------------d~~~~A~~la~~i 74 (219)
|.+|+++++-.+. .+.+.+.|..+|+.+.++++-...+ +--..+..|.+.+
T Consensus 26 G~~Viavt~d~gq~~~~El~~a~~~A~~lG~~~~~viD~~eef~e~vi~p~i~aNa~y~G~yPl~~~nR~~~~~~l~e~A 105 (400)
T PRK04527 26 GYAVHTVFADTGGVDAEERDFIEKRAAELGAASHVTVDGGPAIWEGFVKPLVWAGEGYQGQYPLLVSDRYLIVDAALKRA 105 (400)
T ss_pred CCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHHHHHHHHhcchhhcCCCCCccccHHHHHHHHHHHH
Confidence 4689999985433 3344577888999877666643211 2233566778888
Q ss_pred HhcCCCEEEEccccc-CCCcCcHHHHHHHHcCCCcccceeEE
Q psy9408 75 KKENPQLVILGKQSI-DSDNNQTGQMLAALLNWPQATFASKI 115 (219)
Q Consensus 75 k~~~~dlVl~G~~s~-d~~~~~v~~~lA~~Lg~p~vt~v~~l 115 (219)
++.+.+.|..|.+.. +...+.=++.-|.. ....++-..+.
T Consensus 106 ~~~G~~~IA~G~tgkgnDq~rfrpg~~Al~-el~ViaPlre~ 146 (400)
T PRK04527 106 EELGTRIIAHGCTGMGNDQVRFDLAVKALG-DYQIVAPIREI 146 (400)
T ss_pred HHCCCCEEEecCcCCCCchhhccHHHHHhh-cCCccchHHHh
Confidence 889999999999833 21223333333333 44455444443
No 241
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=42.02 E-value=2.2e+02 Score=24.28 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=41.7
Q ss_pred HHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcC-CCEEEEcccccCCCcCcHHHHHHHH
Q psy9408 38 KEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKEN-PQLVILGKQSIDSDNNQTGQMLAAL 103 (219)
Q Consensus 38 ~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~-~dlVl~G~~s~d~~~~~v~~~lA~~ 103 (219)
.+.++++..+|+|.+++.+.-....|..+...+..+-+..+ +++-| |-..-+..+-.++-.+++.
T Consensus 146 ~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l-~~H~Hn~~GlA~An~laAi 211 (268)
T cd07940 146 IEVVEAAIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPI-SVHCHNDLGLAVANSLAAV 211 (268)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCceeE-EEEecCCcchHHHHHHHHH
Confidence 45678889999999888775446789999888888776654 12333 3333333344455555443
No 242
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=41.97 E-value=23 Score=26.71 Aligned_cols=87 Identities=21% Similarity=0.242 Sum_probs=47.2
Q ss_pred hHHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEE-EEec-----CCCCCHHHHHHHHHHHHHhcCCC
Q psy9408 7 DEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAI-LIET-----DTILQSLSVAKLLQVIVKKENPQ 80 (219)
Q Consensus 7 D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~-~v~~-----~~~~d~~~~A~~la~~ik~~~~d 80 (219)
..++++.+..|+++ |.+|+.++.+..+... .+... .... ............+...+++.+||
T Consensus 15 e~~~~~l~~~l~~~---G~~v~v~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D 82 (177)
T PF13439_consen 15 ERVVLNLARALAKR---GHEVTVVSPGVKDPIE---------EELVKIFVKIPYPIRKRFLRSFFFMRRLRRLIKKEKPD 82 (177)
T ss_dssp HHHHHHHHHHHHHT---T-EEEEEESS-TTS-S---------STEEEE---TT-SSTSS--HHHHHHHHHHHHHHHHT-S
T ss_pred HHHHHHHHHHHHHC---CCEEEEEEcCCCccch---------hhccceeeeeecccccccchhHHHHHHHHHHHHHcCCC
Confidence 45778888899885 5799999877653211 11111 1110 01234556678888999999999
Q ss_pred EEEEcccccCCCcCcHHHHHHHHcCCCcccc
Q psy9408 81 LVILGKQSIDSDNNQTGQMLAALLNWPQATF 111 (219)
Q Consensus 81 lVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~ 111 (219)
+|.+-... ......++.+ +.|.+..
T Consensus 83 iVh~~~~~-----~~~~~~~~~~-~~~~v~~ 107 (177)
T PF13439_consen 83 IVHIHGPP-----AFWIALLACR-KVPIVYT 107 (177)
T ss_dssp EEECCTTH-----CCCHHHHHHH-CSCEEEE
T ss_pred eEEecccc-----hhHHHHHhcc-CCCEEEE
Confidence 99433322 2234444545 6666533
No 243
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=41.87 E-value=17 Score=31.16 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhcCCCEEEEccc
Q psy9408 64 LSVAKLLQVIVKKENPQLVILGKQ 87 (219)
Q Consensus 64 ~~~A~~la~~ik~~~~dlVl~G~~ 87 (219)
..=+++++.+|++.+|+++|||+-
T Consensus 192 h~GS~~V~dlIk~~~P~ivl~Ghi 215 (255)
T PF14582_consen 192 HVGSAAVRDLIKTYNPDIVLCGHI 215 (255)
T ss_dssp TTSBHHHHHHHHHH--SEEEE-SS
T ss_pred cccHHHHHHHHHhcCCcEEEeccc
Confidence 344578999999999999999986
No 244
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=41.84 E-value=3.2e+02 Score=26.15 Aligned_cols=42 Identities=14% Similarity=0.170 Sum_probs=32.6
Q ss_pred hHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcC
Q psy9408 37 CKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKEN 78 (219)
Q Consensus 37 ~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~ 78 (219)
..+.++.+...|+|++++.+.-....|..+...+..+.+..+
T Consensus 156 l~~~~~~a~~aGad~i~i~DTvG~~~P~~v~~li~~l~~~~~ 197 (526)
T TIGR00977 156 ALATLATAQQAGADWLVLCDTNGGTLPHEISEITTKVKRSLK 197 (526)
T ss_pred HHHHHHHHHhCCCCeEEEecCCCCcCHHHHHHHHHHHHHhCC
Confidence 556778888999999888764446789999998888876544
No 245
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=41.72 E-value=3.1e+02 Score=25.94 Aligned_cols=26 Identities=15% Similarity=0.089 Sum_probs=15.9
Q ss_pred CEEEEEecCCCCCCCCCHHHHHHHcc
Q psy9408 141 PAIITTDLRMNEPRYVTLMNIIKARK 166 (219)
Q Consensus 141 P~vvtv~~~~~~pr~p~l~~~~~A~~ 166 (219)
|-+=-+..-...+.+||-...|++-+
T Consensus 211 kGl~~i~~~~~~~i~PTP~AV~~a~~ 236 (463)
T TIGR01319 211 KGLDNAEDFIGEELMPTPAAVFEAAK 236 (463)
T ss_pred CCHHHHHHHhCCcccCCHHHHHHHHH
Confidence 33333334445577888888887765
No 246
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=41.53 E-value=53 Score=28.86 Aligned_cols=53 Identities=9% Similarity=0.006 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccce
Q psy9408 60 ILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFA 112 (219)
Q Consensus 60 ~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v 112 (219)
..|+...+.++.+.+.+.+..+|+.+..|.-.........+++.+++|+++..
T Consensus 45 ~~d~~~~~~~~~~~l~~~~v~~iig~~~s~~~~~~~~~~~v~~~~~iP~Is~~ 97 (362)
T cd06367 45 DTDPISLLLSVCDLLVVQVVAGVVFSDPTDEEAVAQILDFTSAQTRIPVVGIS 97 (362)
T ss_pred CCCHHHHHHHHHHHhcccceEEEEecCCCCccchhhhhhhhhhhhcCcEEEee
Confidence 56888888888888876666666655554210113456888999999999853
No 247
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=41.42 E-value=1.3e+02 Score=24.85 Aligned_cols=60 Identities=12% Similarity=0.214 Sum_probs=41.7
Q ss_pred HHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHH
Q psy9408 8 EIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIV 74 (219)
Q Consensus 8 ~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~i 74 (219)
...++...+|++.. +..+|..+++-.. .....+++..|++ .|+.. ..+++....+|..+.
T Consensus 59 ~~G~e~~~~l~~~~-p~~~vvvlt~~~~--~~~v~~al~~Ga~-Gyl~K---~~~~~~l~~ai~~v~ 118 (211)
T COG2197 59 MDGLEALKQLRARG-PDIKVVVLTAHDD--PAYVIRALRAGAD-GYLLK---DASPEELVEAIRAVA 118 (211)
T ss_pred CChHHHHHHHHHHC-CCCcEEEEeccCC--HHHHHHHHHcCCC-EEEeC---CCCHHHHHHHHHHHH
Confidence 45677778888664 4567888887764 6789999999999 55555 255665556555554
No 248
>TIGR00651 pta phosphate acetyltransferase. Model contains a gene from E.coli coding for ethanolamine utilization protein (euti) and also contains similarity to malate oxidoreductases
Probab=41.39 E-value=2.5e+02 Score=24.84 Aligned_cols=76 Identities=17% Similarity=0.256 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCC--EEEEEec--CC----------------CCCHHH
Q psy9408 6 FDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVD--RAILIET--DT----------------ILQSLS 65 (219)
Q Consensus 6 ~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD--~v~~v~~--~~----------------~~d~~~ 65 (219)
.|+..|++|.++.++ | =+..+.+|.++ ...+.+-..|.| .+=.++. +. +.+.++
T Consensus 7 ~d~~vl~Aa~~~~~e-g---i~~pILvG~~~--~I~~~~~~~gl~l~~~eIid~~~~~~~~~~~~~~~~lr~~kG~~~~~ 80 (303)
T TIGR00651 7 WEPRVLKAAALLAER-G---IATPVVLGNPE--EIVPSAAGCNLDLGHVVIIDPDVSPDRESYAERYYELRKHKGMTLAQ 80 (303)
T ss_pred CCHHHHHHHHHHHHc-C---CeeEEEECCHH--HHHHHHHHcCCCcCCcEEECCCCchHHHHHHHHHHHHHhcCCCCHHH
Confidence 588999999998875 2 46778899863 333334455654 2222221 10 112332
Q ss_pred HH--------HHHHHHHHhcCCCEEEEcccc
Q psy9408 66 VA--------KLLQVIVKKENPQLVILGKQS 88 (219)
Q Consensus 66 ~A--------~~la~~ik~~~~dlVl~G~~s 88 (219)
| ..-+.+++..+.|.+++|...
T Consensus 81 -A~~~~~~~~~~a~~lv~~G~aD~lv~G~~~ 110 (303)
T TIGR00651 81 -ARKQLRDESYFATMMVALGEADGLVSGAVH 110 (303)
T ss_pred -HHHHhhccHHHHHHHHHCCCCCEEEeCCCC
Confidence 3 223456777789999999854
No 249
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=41.35 E-value=44 Score=26.54 Aligned_cols=41 Identities=20% Similarity=0.067 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 65 SVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 65 ~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
..++.|++.+++.++|+|+. -.. .+-.++..+|.+||+|++
T Consensus 33 ~~~~~la~~i~~~~~d~ivg-i~~---~G~~~A~~la~~L~~~~~ 73 (169)
T TIGR01090 33 FLIDLLVERYKDANIDYIVG-PEA---RGFIFGAALAYKLGVGFV 73 (169)
T ss_pred HHHHHHHHHhccCCCCEEEe-ehh---ccHHHHHHHHHHHCCCEE
Confidence 44555555565567787664 333 334799999999999975
No 250
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=41.32 E-value=32 Score=30.94 Aligned_cols=45 Identities=20% Similarity=0.338 Sum_probs=35.4
Q ss_pred HHHhCCCCEEEEEecCC----------------CCCHHHHHHHHHHHHHhcCCCEEEEcccc
Q psy9408 43 IAMAMGVDRAILIETDT----------------ILQSLSVAKLLQVIVKKENPQLVILGKQS 88 (219)
Q Consensus 43 ~~~a~GaD~v~~v~~~~----------------~~d~~~~A~~la~~ik~~~~dlVl~G~~s 88 (219)
..-..-.-+++.++|+= +.|+..++.+|..+++ ++||+||.|.--
T Consensus 148 ~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALR-eDPDVIlvGEmR 208 (353)
T COG2805 148 YINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALR-EDPDVILVGEMR 208 (353)
T ss_pred HHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhh-cCCCEEEEeccc
Confidence 33345577888999751 4689999999999997 699999999863
No 251
>PF01177 Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro: IPR015942 This entry represents a group of related proteins that includes aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase. Aspartate racemase (5.1.1.13 from EC) and glutamate racemase (5.1.1.3 from EC) are two evolutionary related bacterial enzymes that do not seem to require a cofactor for their activity []. Glutamate racemase, which interconverts L-glutamate into D-glutamate, is required for the biosynthesis of peptidoglycan and some peptide-based antibiotics such as gramicidin S. In addition to characterised aspartate and glutamate racemases, this family also includes a hypothetical protein from Erwinia carotovora and one from Escherichia coli (ygeA). Two conserved cysteines are present in the sequence of these enzymes. They are expected to play a role in catalytic activity by acting as bases in proton abstraction from the substrate.; PDB: 3S7Z_A 3S81_C 3OUT_A 3EIS_B 3IXL_A 3IP8_A 2VLB_D 3DTV_A 3IXM_A 3DG9_A ....
Probab=41.26 E-value=47 Score=26.86 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccc
Q psy9408 65 SVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATF 111 (219)
Q Consensus 65 ~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~ 111 (219)
.+.+.+.+++++.++|.|++|++.... -......+...+|+|+++.
T Consensus 162 ~~~~~~~~l~~~~~~d~iiLgCt~l~~-~~~~~~~l~~~~gipVid~ 207 (216)
T PF01177_consen 162 ILAEAARELIKEDGADAIILGCTHLPL-LLGAIEALEEELGIPVIDS 207 (216)
T ss_dssp HHHHHHHHHHHCTTSSEEEEESTTGGG-GHHHHHHHHHTCSSEEEEH
T ss_pred HHHHHHHHHhccCCCCEEEECCCchHH-HHHHHHhhcccCCCEEEcc
Confidence 334444444457789999999987431 0134566677789998854
No 252
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=41.19 E-value=47 Score=27.08 Aligned_cols=40 Identities=13% Similarity=0.144 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 65 SVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 65 ~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
..+..+++.+ ..++|+|+.... .+-.++..+|..|+.|++
T Consensus 39 ~~~~~l~~~~-~~~~D~Ivg~e~----~Gi~lA~~vA~~l~~p~~ 78 (187)
T PRK12560 39 ETAKEIIKYI-DKDIDKIVTEED----KGAPLATPVSLLSGKPLA 78 (187)
T ss_pred HHHHHHHHHh-CCCCCEEEEEcc----ccHHHHHHHHHhhCCCEE
Confidence 3455566655 457999986544 457799999999999964
No 253
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=41.14 E-value=1.3e+02 Score=26.82 Aligned_cols=81 Identities=21% Similarity=0.295 Sum_probs=42.6
Q ss_pred CcEEEEEEecCcchH---HHHHHHHhCCC-CEEEEEecCCCCCHHHHHHHH---HHHHHhcCCCEEEEcccccCCCcCcH
Q psy9408 24 IKEIIAISCGNKKCK---EILQIAMAMGV-DRAILIETDTILQSLSVAKLL---QVIVKKENPQLVILGKQSIDSDNNQT 96 (219)
Q Consensus 24 g~~V~av~~G~~~~~---~~lr~~~a~Ga-D~v~~v~~~~~~d~~~~A~~l---a~~ik~~~~dlVl~G~~s~d~~~~~v 96 (219)
+-++..+.-|..-.. ..+.+ .+|. .--+.+..+.......++..+ ++++++.+||+||+=. |..+.-.
T Consensus 8 ~~~~~li~tG~H~~~~~g~~~~~--~f~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Pd~Vlv~G---D~~~~la 82 (346)
T PF02350_consen 8 GFELILIVTGQHLDPEMGDTFFE--GFGIPKPDYLLDSDSQSMAKSTGLAIIELADVLEREKPDAVLVLG---DRNEALA 82 (346)
T ss_dssp TEEEEEEEECSS--CHHHHHHHH--HTT--SEEEE--STTS-HHHHHHHHHHHHHHHHHHHT-SEEEEET---TSHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHh--hCCCCCCCcccccccchHHHHHHHHHHHHHHHHHhcCCCEEEEEc---CCchHHH
Confidence 468888888875222 23344 4555 334455533322334444443 4556777999877533 2233445
Q ss_pred HHHHHHHcCCCcc
Q psy9408 97 GQMLAALLNWPQA 109 (219)
Q Consensus 97 ~~~lA~~Lg~p~v 109 (219)
++..|.++++|++
T Consensus 83 ~alaA~~~~ipv~ 95 (346)
T PF02350_consen 83 AALAAFYLNIPVA 95 (346)
T ss_dssp HHHHHHHTT-EEE
T ss_pred HHHHHHHhCCCEE
Confidence 6888899999944
No 254
>PLN02735 carbamoyl-phosphate synthase
Probab=41.11 E-value=59 Score=34.04 Aligned_cols=64 Identities=16% Similarity=0.217 Sum_probs=42.2
Q ss_pred HhhHHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCC-CCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy9408 5 PFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMG-VDRAILIETDTILQSLSVAKLLQVIVKKENPQLVI 83 (219)
Q Consensus 5 p~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~G-aD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl 83 (219)
+||.+++.....|++. |.+++++-..|+.. .. .+. +|+.|... .+...+.++++++++|.|+
T Consensus 592 efd~~~v~~~~alr~~---G~~tI~v~~npetv-st-----d~~~aD~~y~~p--------l~~e~vl~i~~~e~~d~Vi 654 (1102)
T PLN02735 592 EFDYCCCHASFALQDA---GYETIMMNSNPETV-ST-----DYDTSDRLYFEP--------LTVEDVLNVIDLERPDGII 654 (1102)
T ss_pred ccceeHHHHHHHHHHc---CCeEEEEeCCCccc-cC-----CcccCCeEEEEe--------CCHHHHHHHHHHhCCCEEE
Confidence 5777777777777764 46777766665421 00 111 67777753 2257778899999999999
Q ss_pred Ec
Q psy9408 84 LG 85 (219)
Q Consensus 84 ~G 85 (219)
.+
T Consensus 655 ~~ 656 (1102)
T PLN02735 655 VQ 656 (1102)
T ss_pred EC
Confidence 64
No 255
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=41.00 E-value=95 Score=28.62 Aligned_cols=68 Identities=12% Similarity=0.086 Sum_probs=37.8
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHH--HHHHHHHHHhcCCCEEEEccc
Q psy9408 10 AIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSV--AKLLQVIVKKENPQLVILGKQ 87 (219)
Q Consensus 10 Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~--A~~la~~ik~~~~dlVl~G~~ 87 (219)
++..++.+++ + |.+++++...+.. .. ... .-+|+.+.+... .+...| ...|.+++++.++|.|+.|..
T Consensus 14 ~~~~~~aa~~-l--G~~vv~~~~~~d~--~a--~~~-~~aD~~~~~~~~--~~~~~y~d~~~l~~~a~~~~id~I~pg~g 83 (449)
T TIGR00514 14 ALRILRACKE-L--GIKTVAVHSTADR--DA--LHV-LLADEAVCIGPA--PSAKSYLNIPNIISAAEITGADAIHPGYG 83 (449)
T ss_pred HHHHHHHHHH-c--CCeEEEEEChhhh--cc--ccc-ccCCEEEEcCCC--CchhchhCHHHHHHHHHHhCCCEEEeCCC
Confidence 4444444444 3 4677776543221 10 011 127888877421 222233 346888888899999998763
No 256
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=40.98 E-value=1.7e+02 Score=23.95 Aligned_cols=69 Identities=19% Similarity=0.176 Sum_probs=45.4
Q ss_pred HHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHh-CCCCEEEEEecCCCCCHHHHHHHHHHHHHhc--CCCEEEEcc
Q psy9408 11 IESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMA-MGVDRAILIETDTILQSLSVAKLLQVIVKKE--NPQLVILGK 86 (219)
Q Consensus 11 le~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a-~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~--~~dlVl~G~ 86 (219)
...|+++.+. |.+|+...-..+..++.++++.. +| .+++.+ | ..+.+.+...+.++.++. ..|+++...
T Consensus 10 ~aia~~l~~~---Ga~V~~~~~~~~~~~~~~~~l~~~~~-~~~~~~--D-~~~~~~v~~~~~~~~~~~~g~iD~lV~~a 81 (241)
T PF13561_consen 10 RAIARALAEE---GANVILTDRNEEKLADALEELAKEYG-AEVIQC--D-LSDEESVEALFDEAVERFGGRIDILVNNA 81 (241)
T ss_dssp HHHHHHHHHT---TEEEEEEESSHHHHHHHHHHHHHHTT-SEEEES--C-TTSHHHHHHHHHHHHHHHCSSESEEEEEE
T ss_pred HHHHHHHHHC---CCEEEEEeCChHHHHHHHHHHHHHcC-CceEee--c-CcchHHHHHHHHHHHhhcCCCeEEEEecc
Confidence 4567777765 47888777665544455666655 55 445332 2 458888888888888885 589877543
No 257
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=40.87 E-value=88 Score=26.99 Aligned_cols=58 Identities=12% Similarity=0.053 Sum_probs=39.6
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccce
Q psy9408 52 AILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFA 112 (219)
Q Consensus 52 v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v 112 (219)
+-++..|...|+........+++.+.+++.|+-+..+. ...-...+++..++|+++..
T Consensus 45 i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviG~~~s~---~~~a~~~~~~~~~vp~i~~~ 102 (345)
T cd06338 45 VELIYYDDQSNPARAARAYERLITQDKVDFLLGPYSSG---LTLAAAPVAEKYGVPMVAGS 102 (345)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHhhcCccEEecCCcch---hHHHHHHHHHHhCCcEEecC
Confidence 33333344678888888888898877888887655432 22334457788999999754
No 258
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=40.85 E-value=1.8e+02 Score=23.01 Aligned_cols=78 Identities=10% Similarity=0.075 Sum_probs=44.4
Q ss_pred cEEEEEEecCcc------hHHHHHH-HHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHH
Q psy9408 25 KEIIAISCGNKK------CKEILQI-AMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTG 97 (219)
Q Consensus 25 ~~V~av~~G~~~------~~~~lr~-~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~ 97 (219)
-++..++.|.+. ....+.. +-.+|++-...--- .-|.+...++|.+++...++|+|++...+.-+..-.++
T Consensus 5 ~rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~~~iv--~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~~D~t~ 82 (163)
T TIGR02667 5 LRIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLADRAIV--KDDIYQIRAQVSAWIADPDVQVILITGGTGFTGRDVTP 82 (163)
T ss_pred cEEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEEEEEc--CCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCCcH
Confidence 356777777632 1224444 44578764432211 23567788888888765679988776555444434444
Q ss_pred HHHHHHc
Q psy9408 98 QMLAALL 104 (219)
Q Consensus 98 ~~lA~~L 104 (219)
..++..+
T Consensus 83 eal~~l~ 89 (163)
T TIGR02667 83 EALEPLF 89 (163)
T ss_pred HHHHHHH
Confidence 4444443
No 259
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=40.85 E-value=62 Score=24.18 Aligned_cols=14 Identities=14% Similarity=-0.064 Sum_probs=7.9
Q ss_pred HhcCCCEEEEcccc
Q psy9408 75 KKENPQLVILGKQS 88 (219)
Q Consensus 75 k~~~~dlVl~G~~s 88 (219)
++.+.|-++-+.++
T Consensus 99 ~~~G~d~~~~~~~~ 112 (122)
T cd02071 99 KEMGVAEIFGPGTS 112 (122)
T ss_pred HHCCCCEEECCCCC
Confidence 34566666655554
No 260
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=40.78 E-value=90 Score=28.09 Aligned_cols=85 Identities=18% Similarity=0.220 Sum_probs=55.9
Q ss_pred cEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCC----C------CCH----HHHHHHHHHHHHhc-------------
Q psy9408 25 KEIIAISCGNKKCKEILQIAMAMGVDRAILIETDT----I------LQS----LSVAKLLQVIVKKE------------- 77 (219)
Q Consensus 25 ~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~----~------~d~----~~~A~~la~~ik~~------------- 77 (219)
.+|..+-+|+-. -+.++.+...|+.++.++++|. + ++. ..-+.++++.+++.
T Consensus 29 ~~VlivG~GGlG-s~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~~i 107 (355)
T PRK05597 29 AKVAVIGAGGLG-SPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVRRL 107 (355)
T ss_pred CeEEEECCCHHH-HHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEeec
Confidence 467777777654 4678889999999999999763 1 111 12233333333322
Q ss_pred ----------CCCEEEEcccccCCCcCcHHHHHHHHcCCCcccce
Q psy9408 78 ----------NPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFA 112 (219)
Q Consensus 78 ----------~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v 112 (219)
++|+|+...... .++.+--..+..+++|++...
T Consensus 108 ~~~~~~~~~~~~DvVvd~~d~~--~~r~~~n~~c~~~~ip~v~~~ 150 (355)
T PRK05597 108 TWSNALDELRDADVILDGSDNF--DTRHLASWAAARLGIPHVWAS 150 (355)
T ss_pred CHHHHHHHHhCCCEEEECCCCH--HHHHHHHHHHHHcCCCEEEEE
Confidence 578888775443 456677788999999988654
No 261
>PRK05406 LamB/YcsF family protein; Provisional
Probab=40.74 E-value=58 Score=28.10 Aligned_cols=54 Identities=15% Similarity=0.179 Sum_probs=40.6
Q ss_pred EEEEEecCC-C----CCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCccc
Q psy9408 51 RAILIETDT-I----LQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQAT 110 (219)
Q Consensus 51 ~v~~v~~~~-~----~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt 110 (219)
++-+|.... - ..-..+|+++.++++..+|++++++.. +..-...|..+|++++.
T Consensus 105 ~l~hVKPHGALYN~~~~d~~~a~av~~ai~~~~~~l~l~~~~------~s~~~~~A~~~Gl~~~~ 163 (246)
T PRK05406 105 RVSHVKPHGALYNMAAKDPALADAVAEAVAAVDPSLILVGLA------GSELIRAAEEAGLRTAS 163 (246)
T ss_pred eeEEeCccHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEecC------ChHHHHHHHHcCCcEEE
Confidence 466666322 2 245689999999999999999999853 23678999999999873
No 262
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=40.58 E-value=2.4e+02 Score=24.23 Aligned_cols=92 Identities=20% Similarity=0.107 Sum_probs=49.5
Q ss_pred HHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCC--CCC-------H---HHHHHHHHHHHHh
Q psy9408 9 IAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDT--ILQ-------S---LSVAKLLQVIVKK 76 (219)
Q Consensus 9 ~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~--~~d-------~---~~~A~~la~~ik~ 76 (219)
.+++.|..|.++ |.+|+.++.+.....+. .-..|.+ ++.+.... ... . ......+.+++++
T Consensus 15 ~~~~la~~l~~~---G~ev~v~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 87 (350)
T cd03785 15 PALALAEELRER---GAEVLFLGTKRGLEARL---VPKAGIP-LHTIPVGGLRRKGSLKKLKAPFKLLKGVLQARKILKK 87 (350)
T ss_pred HHHHHHHHHHhC---CCEEEEEECCCcchhhc---ccccCCc-eEEEEecCcCCCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777765 47898887654321111 1123554 45544321 111 1 1223346677888
Q ss_pred cCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccc
Q psy9408 77 ENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATF 111 (219)
Q Consensus 77 ~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~ 111 (219)
.+||+|++-... ..-.+...|...+.|++..
T Consensus 88 ~~pDvI~~~~~~----~~~~~~~~a~~~~~p~v~~ 118 (350)
T cd03785 88 FKPDVVVGFGGY----VSGPVGLAAKLLGIPLVIH 118 (350)
T ss_pred cCCCEEEECCCC----cchHHHHHHHHhCCCEEEE
Confidence 899999863221 1223345566678998754
No 263
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=40.37 E-value=2.4e+02 Score=26.08 Aligned_cols=105 Identities=16% Similarity=0.138 Sum_probs=0.0
Q ss_pred CCCC-----HhhHHHHHHHHHhhhhcCCCcEEEEEEecCc-chHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHH
Q psy9408 1 MSIN-----PFDEIAIESAIRLRESSNKIKEIIAISCGNK-KCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIV 74 (219)
Q Consensus 1 ~~iN-----p~D~~Ale~A~~l~e~~g~g~~V~av~~G~~-~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~i 74 (219)
++|. ..|...|++|++..+ |.+...-+.-.+ ..++..+-+..||+ .+.+. ..+-..-++.+...+
T Consensus 191 LIL~gsg~~~kD~eVLeaaLe~~~----G~kpLL~SAt~e~Ny~~ia~lAk~yg~--~Vvv~---s~~Din~ak~Ln~kL 261 (389)
T TIGR00381 191 IVIGGSGNPEKDPLVLEKAAEVAE----GERCLLASANLDLDYEKIANAAKKYGH--VVLSW---TIMDINMQKTLNRYL 261 (389)
T ss_pred EEEeCCCCCcCCHHHHHHHHHHhC----CCCcEEEecCchhhHHHHHHHHHHhCC--eEEEE---cCCcHHHHHHHHHHH
Q ss_pred HhcC-C--CEEEEcccccCCCcCcHHHHHHHH-----------cCCCcccceeE
Q psy9408 75 KKEN-P--QLVILGKQSIDSDNNQTGQMLAAL-----------LNWPQATFASK 114 (219)
Q Consensus 75 k~~~-~--dlVl~G~~s~d~~~~~v~~~lA~~-----------Lg~p~vt~v~~ 114 (219)
.+.+ + |+||=..+..-+.+-.-+-..-++ ||+|.++++++
T Consensus 262 ~~~Gv~~eDIVlDP~t~alG~Gieya~s~~erIRraALkgD~~L~~Pii~~~~~ 315 (389)
T TIGR00381 262 LKRGLMPRDIVMDPTTCALGYGIEFSITNMERIRLSGLKGDTDLNMPMSSGTTN 315 (389)
T ss_pred HHcCCCHHHEEEcCCCccccCCHHHHHHHHHHHHHHHhcCCcCCCCCeeccchh
No 264
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=40.28 E-value=2.9e+02 Score=25.10 Aligned_cols=64 Identities=20% Similarity=0.249 Sum_probs=43.3
Q ss_pred hHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHH
Q psy9408 37 CKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAAL 103 (219)
Q Consensus 37 ~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~ 103 (219)
..+.++.+..+|+|++++.+.-....|..+...+..+.+..+..+=+=++.. .+-.++--+|+.
T Consensus 147 l~~~~~~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd---~GlA~AN~laAv 210 (378)
T PRK11858 147 LIEFAKAAEEAGADRVRFCDTVGILDPFTMYELVKELVEAVDIPIEVHCHND---FGMATANALAGI 210 (378)
T ss_pred HHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCeEEEEecCC---cCHHHHHHHHHH
Confidence 3456778889999998887654567999999999988776644444444433 334455555554
No 265
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=40.24 E-value=2.3e+02 Score=24.58 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=18.7
Q ss_pred CCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 78 NPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 78 ~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
..|+++...+ -+..+|..+|.|.+
T Consensus 253 ~a~l~I~nDS--------Gp~HlA~A~g~p~v 276 (322)
T PRK10964 253 GAKAVVSVDT--------GLSHLTAALDRPNI 276 (322)
T ss_pred hCCEEEecCC--------cHHHHHHHhCCCEE
Confidence 4688886655 46789999999977
No 266
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=40.17 E-value=2.4e+02 Score=24.22 Aligned_cols=68 Identities=15% Similarity=0.129 Sum_probs=43.4
Q ss_pred hHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHH-HcCCC
Q psy9408 37 CKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAA-LLNWP 107 (219)
Q Consensus 37 ~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~-~Lg~p 107 (219)
..+..+.+...|+|++++.+.-....|+.+.+.+..+-+..+..+-+=++-. .+-.++-.+++ ..|+-
T Consensus 143 l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~~~i~~H~Hn~---~Gla~an~~~a~~aG~~ 211 (262)
T cd07948 143 LLRVYRAVDKLGVNRVGIADTVGIATPRQVYELVRTLRGVVSCDIEFHGHND---TGCAIANAYAALEAGAT 211 (262)
T ss_pred HHHHHHHHHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC---CChHHHHHHHHHHhCCC
Confidence 4556688889999988776654467999999888888666554443433332 33345555544 44444
No 267
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=40.10 E-value=90 Score=27.94 Aligned_cols=122 Identities=17% Similarity=0.178 Sum_probs=63.5
Q ss_pred HHHHH-hCCCCEEEEEecCC-CCCHHHHHHHHHHHHHhcCCCEEE-EcccccCCCcCcHHHHHHHHc-------------
Q psy9408 41 LQIAM-AMGVDRAILIETDT-ILQSLSVAKLLQVIVKKENPQLVI-LGKQSIDSDNNQTGQMLAALL------------- 104 (219)
Q Consensus 41 lr~~~-a~GaD~v~~v~~~~-~~d~~~~A~~la~~ik~~~~dlVl-~G~~s~d~~~~~v~~~lA~~L------------- 104 (219)
+...+ ..|.+- ...++-. +.+.+ ....+.+.+++.++|.|+ +|..|. -+++-.+|..+
T Consensus 43 v~~~L~~~~~~~-~~~~~~~~~p~~~-~v~~~~~~~~~~~~d~IiaiGGGs~----~D~AK~va~~~~~~~~~~~~~~~~ 116 (370)
T cd08551 43 VIDSLKEAGIEV-VIFDGVEPNPTLS-NVDAAVAAYREEGCDGVIAVGGGSV----LDTAKAIALLATNPGDIWDYEGGK 116 (370)
T ss_pred HHHHHHHcCCeE-EEECCCCCCCCHH-HHHHHHHHHHhcCCCEEEEeCCchH----HHHHHHHHHHHhCCCcHHHHhCcc
Confidence 44444 456653 3333222 33444 444455566778899888 555442 33777777777
Q ss_pred -----CCCcccceeEE----EEeeCCeEEEEEEcCCeEEEEEEc--CCEEEEEecCCC--CCCCCCHHHHHHHccCcce
Q psy9408 105 -----NWPQATFASKI----VLKKNNKILVTQEIEDGKETILLS--LPAIITTDLRMN--EPRYVTLMNIIKARKKNIN 170 (219)
Q Consensus 105 -----g~p~vt~v~~l----~~~~~~~~~~~R~~~gG~~~~~~~--~P~vvtv~~~~~--~pr~p~l~~~~~A~~~~i~ 170 (219)
+.|+++=-+.. ++. ....+..+..+.+..+..+ .|..+-+.+... -|+.-...+.|.|-.+-++
T Consensus 117 ~~~~~~~p~i~VPTt~gtgse~t--~~avi~d~~~~~K~~~~~~~~~P~~~i~Dp~l~~~~P~~~~~a~~~Dal~h~~E 193 (370)
T cd08551 117 PVIKPALPLIAIPTTAGTGSEVT--PFAVITDEETGEKYGIASPELLPDVAILDPELTYTLPPALTAATGMDALTHAIE 193 (370)
T ss_pred cccCCCCCEEEecCCCcchhhcC--CeEEEEECCCCeeEEEeCCCccCCEEEEChHhhcCCCHHHHHHHHHHHHHHHHH
Confidence 66766444433 221 2233333332334443322 576666666433 3666666667776665444
No 268
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=39.95 E-value=21 Score=34.01 Aligned_cols=35 Identities=31% Similarity=0.461 Sum_probs=24.9
Q ss_pred CCCEEEEcccccCCCcCcHHHHHHHHcCCCcccceeEEE
Q psy9408 78 NPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIV 116 (219)
Q Consensus 78 ~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~ 116 (219)
.||+ +.|+-| |++.+|.+||.+||+|+.+-.-+++
T Consensus 401 ~Pdl-I~GnYs---DgnlvA~LLs~~lgv~~~~iaHsLe 435 (550)
T PF00862_consen 401 KPDL-IIGNYS---DGNLVASLLSRKLGVTQCFIAHSLE 435 (550)
T ss_dssp --SE-EEEEHH---HHHHHHHHHHHHHT-EEEEE-SS-H
T ss_pred CCcE-EEeccC---cchHHHHHHHhhcCCceehhhhccc
Confidence 5997 558887 5688999999999999987766664
No 269
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=39.61 E-value=63 Score=27.36 Aligned_cols=46 Identities=17% Similarity=0.040 Sum_probs=28.6
Q ss_pred HHHHhCCCCEEEEEecCC-CCC-HHHHHHHHHHHHHhcCCCEEEEccccc
Q psy9408 42 QIAMAMGVDRAILIETDT-ILQ-SLSVAKLLQVIVKKENPQLVILGKQSI 89 (219)
Q Consensus 42 r~~~a~GaD~v~~v~~~~-~~d-~~~~A~~la~~ik~~~~dlVl~G~~s~ 89 (219)
..+...|+|-++++.+-. ..+ .......||+. -.++|+||.|++-.
T Consensus 165 ~~l~~~~~D~iIvl~H~G~~~~~~~~~~~~la~~--~~giDvIigGH~H~ 212 (257)
T cd07408 165 AALKAKGADVIVALGHLGVDRTSSPWTSTELAAN--VTGIDLIIDGHSHT 212 (257)
T ss_pred HHHHhCCCCEEEEEeCcCcCCCCCCccHHHHHHh--CCCceEEEeCCCcc
Confidence 445567999999998643 222 22223444442 24799999998764
No 270
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=39.56 E-value=2.6e+02 Score=24.41 Aligned_cols=76 Identities=17% Similarity=0.151 Sum_probs=49.5
Q ss_pred HHHHHHHHHhhhhcCCCcEEEEEEecCc----chHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy9408 8 EIAIESAIRLRESSNKIKEIIAISCGNK----KCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVI 83 (219)
Q Consensus 8 ~~Ale~A~~l~e~~g~g~~V~av~~G~~----~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl 83 (219)
+..++...+++++. ....++.++.-.+ ..+..++.+...|+|-+++.+-+ ...+.-+.+.+++++-|+|+
T Consensus 79 ~~~lel~~~~r~~~-~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP-----~ee~~~~~~~~~~~gi~~I~ 152 (265)
T COG0159 79 EDTLELVEEIRAKG-VKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLP-----PEESDELLKAAEKHGIDPIF 152 (265)
T ss_pred HHHHHHHHHHHhcC-CCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCC-----hHHHHHHHHHHHHcCCcEEE
Confidence 34566677777652 2334555554433 35667889999999999987743 23455677777888888777
Q ss_pred Eccccc
Q psy9408 84 LGKQSI 89 (219)
Q Consensus 84 ~G~~s~ 89 (219)
+-.-++
T Consensus 153 lvaPtt 158 (265)
T COG0159 153 LVAPTT 158 (265)
T ss_pred EeCCCC
Confidence 655443
No 271
>PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=39.54 E-value=1.1e+02 Score=27.51 Aligned_cols=61 Identities=18% Similarity=0.126 Sum_probs=43.9
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHHHHhc-----CCCEEEEcccccCCCcCcHHHHHHHHcCCCc
Q psy9408 47 MGVDRAILIETDTILQSLSVAKLLQVIVKKE-----NPQLVILGKQSIDSDNNQTGQMLAALLNWPQ 108 (219)
Q Consensus 47 ~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~-----~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~ 108 (219)
.|..+-++..++ ....+--+++..+++++. +.|+|+++.++.|...-..+.+++.+||.+.
T Consensus 46 ~Gi~~R~~~~~~-e~~~~la~~Aa~~aL~~a~~~~~dId~lI~~t~t~d~~~P~~a~~v~~~Lg~~~ 111 (353)
T PRK12880 46 IGLNTRYICDEN-TCVSDLGKHAANTLLQGLNIDKNSLDALIVVTQSPDFFMPSTACYLHQLLNLSS 111 (353)
T ss_pred cCceEEEeCCCC-CCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCCcHHHHHHHHhCCCC
Confidence 577766665532 333444455555666654 4699999999988888999999999999873
No 272
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=39.14 E-value=2.6e+02 Score=25.77 Aligned_cols=62 Identities=15% Similarity=0.100 Sum_probs=37.4
Q ss_pred HHhCCCCEEEEEecCC-----------CCCHHHHHHHHHHHHHhcCCC-EEEEcccccCCCcCcHHHHHHHHcCCCccc
Q psy9408 44 AMAMGVDRAILIETDT-----------ILQSLSVAKLLQVIVKKENPQ-LVILGKQSIDSDNNQTGQMLAALLNWPQAT 110 (219)
Q Consensus 44 ~~a~GaD~v~~v~~~~-----------~~d~~~~A~~la~~ik~~~~d-lVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt 110 (219)
....|+|=++..+.|. ..++..+...++..+-+..+. .|+..-.++ .+--++|..+|..++.
T Consensus 221 v~~~~adlgia~D~DaDR~~ivd~~G~~l~~d~~~~lla~~ll~~~~~~~vv~~v~ss-----~~~~~ia~~~g~~v~~ 294 (443)
T cd03089 221 VKENGADLGIAFDGDGDRLGVVDEKGEIIWGDRLLALFARDILKRNPGATIVYDVKCS-----RNLYDFIEEAGGKPIM 294 (443)
T ss_pred HHHcCCCEEEEecCCcceeEEECCCCcEeCHHHHHHHHHHHHHHHCCCCeEEEecccc-----hHHHHHHHHcCCeEEE
Confidence 4445666555554331 257888888888776544332 355444432 3777888888877643
No 273
>TIGR02706 P_butyryltrans phosphate butyryltransferase. Members of this family are phosphate butyryltransferase, also called phosphotransbutyrylase. In general, this enzyme is found in butyrate-producing anaerobic bacteria, encoded next to the gene for butyrate kinase. Together, these two enzymes represent what may be the less common of two pathways for butyrate production from butyryl-CoA. The alternative is transfer of the CoA group to acetate by butyryl-CoA:acetate CoA transferase. Cutoffs for this model are set such that the homolog from Thermotoga maritima, whose activity on butyryl-CoA is only 30 % of its activity with acetyl-CoA, scores in the zone between trusted and noice cutoffs.
Probab=39.13 E-value=1.3e+02 Score=26.38 Aligned_cols=76 Identities=18% Similarity=0.216 Sum_probs=45.9
Q ss_pred CHhhHHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHH-HHhCCCCE-EEEEecCCCCCHHHHHHHHHHHHHhcCCCE
Q psy9408 4 NPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQI-AMAMGVDR-AILIETDTILQSLSVAKLLQVIVKKENPQL 81 (219)
Q Consensus 4 Np~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~-~~a~GaD~-v~~v~~~~~~d~~~~A~~la~~ik~~~~dl 81 (219)
.+.|+..|+++.++.+. | -+..+.+|+++ .+++ +-.+|.+. -+.+-+.. +...-+..-..++++.+.|.
T Consensus 20 ~~~d~~vl~A~~~~~~~-~---~~~~iLvG~~~---~I~~~~~~~~l~~~~ieIi~~~--~~~~s~~~a~~lv~~G~aD~ 90 (294)
T TIGR02706 20 VAQDEPVLEAVKEAKEH-G---IARAILVGDEE---KINEIAKKIGMNLDDVEIVNAP--SPKKAALLAVRLVSTGKADM 90 (294)
T ss_pred CCCCHHHHHHHHHHHHC-C---CceEEEECCHH---HHHHHHHHcCCCccCcEEECCC--CcHHHHHHHHHHHHCCCCCE
Confidence 46799999999998774 2 35677899753 3443 33455431 12222221 22223344456788889999
Q ss_pred EEEcccc
Q psy9408 82 VILGKQS 88 (219)
Q Consensus 82 Vl~G~~s 88 (219)
++.|..+
T Consensus 91 ~vsg~~~ 97 (294)
T TIGR02706 91 LMKGLVD 97 (294)
T ss_pred EEeCCcC
Confidence 9998843
No 274
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=39.12 E-value=1.9e+02 Score=22.81 Aligned_cols=82 Identities=12% Similarity=0.128 Sum_probs=48.5
Q ss_pred hHHHHHHHHHhhhhcCCCcEEEEEEecCc-------chHHHHHHHHhCCCCEEEEEecCC------CCCHHHHH-----H
Q psy9408 7 DEIAIESAIRLRESSNKIKEIIAISCGNK-------KCKEILQIAMAMGVDRAILIETDT------ILQSLSVA-----K 68 (219)
Q Consensus 7 D~~Ale~A~~l~e~~g~g~~V~av~~G~~-------~~~~~lr~~~a~GaD~v~~v~~~~------~~d~~~~A-----~ 68 (219)
...++..+.++.... +.++.++++... +.+.+-+.+-.+|.+-.+.--+.. ..+....+ .
T Consensus 12 S~~ll~ll~~~~~~~--~~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~ 89 (189)
T TIGR02432 12 SMALLHLLLKLQPKL--KIRLIAAHVDHGLRPESDEEAEFVQQFCKKLNIPLEIKKVDVKALAKGKKKNLEEAAREARYD 89 (189)
T ss_pred HHHHHHHHHHHHHHc--CCCEEEEEeCCCCChhHHHHHHHHHHHHHHcCCCEEEEEecchhhccccCCCHHHHHHHHHHH
Confidence 344555666665554 357999988632 223344556778987544322111 11223222 3
Q ss_pred HHHHHHHhcCCCEEEEcccccC
Q psy9408 69 LLQVIVKKENPQLVILGKQSID 90 (219)
Q Consensus 69 ~la~~ik~~~~dlVl~G~~s~d 90 (219)
.+.+++++.+++.|++|+...|
T Consensus 90 ~l~~~a~~~g~~~i~~Gh~~~D 111 (189)
T TIGR02432 90 FFEEIAKKHGADYILTAHHADD 111 (189)
T ss_pred HHHHHHHHcCCCEEEEcCccHH
Confidence 5556777889999999999866
No 275
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=38.95 E-value=64 Score=26.31 Aligned_cols=42 Identities=10% Similarity=0.015 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhc--CCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 64 LSVAKLLQVIVKKE--NPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 64 ~~~A~~la~~ik~~--~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
...++.|++.+++. ++|+|+.- +..+-.++..+|.+|+.|++
T Consensus 42 ~~~~~~La~~i~~~~~~~d~Ivgi----~~gGi~~A~~la~~L~~~~i 85 (187)
T TIGR01367 42 MELGGELAQKILDYGLKVDFIVGP----AMGGVILGYEVARQLSVRSI 85 (187)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEE----ccCcHHHHHHHHHHhCCCeE
Confidence 35666677777665 67888743 23467789999999999964
No 276
>PRK07742 phosphate butyryltransferase; Validated
Probab=38.87 E-value=2.5e+02 Score=24.67 Aligned_cols=77 Identities=21% Similarity=0.202 Sum_probs=46.6
Q ss_pred CHhhHHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCC--CEEEEEecCCCCCHHHHHHHHHHHHHhcCCCE
Q psy9408 4 NPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGV--DRAILIETDTILQSLSVAKLLQVIVKKENPQL 81 (219)
Q Consensus 4 Np~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~Ga--D~v~~v~~~~~~d~~~~A~~la~~ik~~~~dl 81 (219)
...|+..|+.|.+..++ + -+..+.+|+++ ..-+.+-.+|. ..-+.+-+. .++..-+..-..++++.+.|.
T Consensus 22 ~~~d~~vl~Aa~~a~~e-~---~~~~iLvG~~~--~I~~~~~~~~l~~~~~~~Ii~~--~~~~~s~~~a~~lV~~G~aD~ 93 (299)
T PRK07742 22 VAEDEEVIEAVAKAIEL-Q---LARFRLYGNQE--KIMGMLQEHGLQTSEHIEIIHA--QSSAEAAELAVKAVRNGEADV 93 (299)
T ss_pred CCCCHHHHHHHHHHHHc-C---CceEEEECCHH--HHHHHHHHCCCCCCCCcEEECC--CCHHHHHHHHHHHHHCCCCCE
Confidence 35689999999988776 2 26677899753 32233444554 111222222 122333344456888889999
Q ss_pred EEEcccc
Q psy9408 82 VILGKQS 88 (219)
Q Consensus 82 Vl~G~~s 88 (219)
++.|..+
T Consensus 94 lvsG~~t 100 (299)
T PRK07742 94 LMKGNVP 100 (299)
T ss_pred EEECCcC
Confidence 9998874
No 277
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=38.72 E-value=2.9e+02 Score=25.46 Aligned_cols=102 Identities=16% Similarity=0.075 Sum_probs=51.6
Q ss_pred CCCHhhHHHHHHHHHhhhhcCCCcEEEEEEecC----cchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhc
Q psy9408 2 SINPFDEIAIESAIRLRESSNKIKEIIAISCGN----KKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKE 77 (219)
Q Consensus 2 ~iNp~D~~Ale~A~~l~e~~g~g~~V~av~~G~----~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~ 77 (219)
.+.|.|...-.+..++...+| -..|..+.... ...+...+.+-..|..-+....-+...+...+...|.++.++.
T Consensus 153 Rt~psd~~qa~ai~~ll~~~~-W~~Vaii~~~~~yG~~~~~~~~~~~~~~gi~i~~~~~i~~~~~~~d~~~~l~~l~~~~ 231 (458)
T cd06375 153 RTVPPDFYQAKAMAEILRFFN-WTYVSTVASEGDYGETGIEAFEQEARLRNICIATSEKVGRSADRKSYDSVIRKLLQKP 231 (458)
T ss_pred EecCCcHHHHHHHHHHHHHCC-CeEEEEEEeCchHHHHHHHHHHHHHHHCCeeEEEEEEecCCCCHHHHHHHHHHHhccC
Confidence 445666655555555655554 24566665422 2233333445556655433322122234456666777766556
Q ss_pred CCCEEEEcccccCCCcCcHHHHHHHHcCCC
Q psy9408 78 NPQLVILGKQSIDSDNNQTGQMLAALLNWP 107 (219)
Q Consensus 78 ~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p 107 (219)
++++|++..... +...+ -+-|.++|+.
T Consensus 232 ~a~vVvl~~~~~--~~~~l-l~~a~~~g~~ 258 (458)
T cd06375 232 NARVVVLFTRSE--DAREL-LAAAKRLNAS 258 (458)
T ss_pred CCEEEEEecChH--HHHHH-HHHHHHcCCc
Confidence 899866655432 21222 2345667764
No 278
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=38.55 E-value=1.2e+02 Score=27.89 Aligned_cols=68 Identities=18% Similarity=0.239 Sum_probs=40.9
Q ss_pred HHHHHHHhCCCCEEEEEecCC-----CCC-----HHHHHHHHHHHHHhc-------CCCEEEEcccccCCCcCcHHHHHH
Q psy9408 39 EILQIAMAMGVDRAILIETDT-----ILQ-----SLSVAKLLQVIVKKE-------NPQLVILGKQSIDSDNNQTGQMLA 101 (219)
Q Consensus 39 ~~lr~~~a~GaD~v~~v~~~~-----~~d-----~~~~A~~la~~ik~~-------~~dlVl~G~~s~d~~~~~v~~~lA 101 (219)
-.++.+-++|+|+++.++-.. .++ ...-+..+++++++. ..+.+++|- |..+...+-.+|
T Consensus 150 ~vA~lL~~~G~d~vitvDlHs~~i~~~F~~~pvdnl~a~~~l~~~i~~~i~~l~~d~~~~VVVsP---D~Gg~~rA~~~A 226 (382)
T PRK06827 150 LALQELEELGVDNIITFDAHDPRIENAIPLMGFENLYPSYQIIKALLKNEKDLEIDKDHLMVISP---DTGAMDRAKYYA 226 (382)
T ss_pred HHHHHHHHcCCCeEEEecCChHHhcccCCCCCcCCcCchHHHHHHHHHhcccccccCCCcEEEEE---CccchHHHHHHH
Confidence 344555567999999998532 122 112223455555432 134555544 335677899999
Q ss_pred HHcCCCcc
Q psy9408 102 ALLNWPQA 109 (219)
Q Consensus 102 ~~Lg~p~v 109 (219)
..||.|++
T Consensus 227 ~~Lg~~~a 234 (382)
T PRK06827 227 SVLGVDLG 234 (382)
T ss_pred HHhCCCEE
Confidence 99999865
No 279
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=38.53 E-value=2.9e+02 Score=24.63 Aligned_cols=75 Identities=17% Similarity=0.226 Sum_probs=42.6
Q ss_pred EEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHH----------------HHHHHHHHHHHhcCCCEEEEccccc
Q psy9408 26 EIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSL----------------SVAKLLQVIVKKENPQLVILGKQSI 89 (219)
Q Consensus 26 ~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~----------------~~A~~la~~ik~~~~dlVl~G~~s~ 89 (219)
+-.++..++...-...+-+..+|.+-+...........+ .--.-+.+.+++.+||+++.+.
T Consensus 280 ~~~~i~~~~~~~~~~~~~l~e~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~pdl~ig~~--- 356 (399)
T cd00316 280 KKVAIFGDGDLLLALARFLLELGMEVVAAGTTFGHKADYERREELLGEGTEVVDDGDLEELEELIRELKPDLIIGGS--- 356 (399)
T ss_pred CEEEEECCCcHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHhcCCCCEEEeCCCHHHHHHHHhhcCCCEEEECC---
Confidence 333444444333445556667888765555421100000 1113445567777999999654
Q ss_pred CCCcCcHHHHHHHHcCCCcc
Q psy9408 90 DSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 90 d~~~~~v~~~lA~~Lg~p~v 109 (219)
....++.++|+|++
T Consensus 357 ------~~~~~~~~~~ip~~ 370 (399)
T cd00316 357 ------KGRYIAKKLGIPLV 370 (399)
T ss_pred ------cHHHHHHHhCCCEE
Confidence 45678888999986
No 280
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=38.40 E-value=1.4e+02 Score=24.22 Aligned_cols=66 Identities=20% Similarity=0.273 Sum_probs=46.8
Q ss_pred HHhCCCCE-EEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccceeEEEEeeCCe
Q psy9408 44 AMAMGVDR-AILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIVLKKNNK 122 (219)
Q Consensus 44 ~~a~GaD~-v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~~~~~ 122 (219)
+...|.|+ .++++|| ..+++.|+....+.++++..+.. +.-.|+..--.|-.--|+++...+|.+
T Consensus 3 ~~~~~pd~~lllvdDD-----~~f~~~LaRa~e~RGf~v~~a~~---------~~eal~~art~~PayAvvDlkL~~gsG 68 (182)
T COG4567 3 LMMIGPDKSLLLVDDD-----TPFLRTLARAMERRGFAVVTAES---------VEEALAAARTAPPAYAVVDLKLGDGSG 68 (182)
T ss_pred ccccCCCceeEEecCC-----hHHHHHHHHHHhccCceeEeecc---------HHHHHHHHhcCCCceEEEEeeecCCCc
Confidence 34567888 6666655 36789999999999999999765 444556555666667788888873333
Q ss_pred E
Q psy9408 123 I 123 (219)
Q Consensus 123 ~ 123 (219)
+
T Consensus 69 L 69 (182)
T COG4567 69 L 69 (182)
T ss_pred h
Confidence 3
No 281
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=38.18 E-value=45 Score=24.87 Aligned_cols=55 Identities=18% Similarity=0.272 Sum_probs=29.0
Q ss_pred cEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccc
Q psy9408 25 KEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQS 88 (219)
Q Consensus 25 ~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s 88 (219)
.++..+.+.+....+.++++.+.|+..+++... .....+.+.+++ .++-++|..+
T Consensus 56 iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g-------~~~~~~~~~a~~--~gi~vigp~C 110 (116)
T PF13380_consen 56 IDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG-------AESEELIEAARE--AGIRVIGPNC 110 (116)
T ss_dssp -SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT-------S--HHHHHHHHH--TT-EEEESS-
T ss_pred CCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc-------hHHHHHHHHHHH--cCCEEEeCCc
Confidence 356666666666777888888888888887663 222444445554 4455555443
No 282
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=37.98 E-value=3.1e+02 Score=25.61 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=22.5
Q ss_pred HHHHHHh--cCCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 70 LQVIVKK--ENPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 70 la~~ik~--~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
+.+.+++ .+||+++-+. -.-.+|.+||+|++
T Consensus 378 l~~~i~~~~~~~Dliig~s---------~~~~~a~k~gip~~ 410 (461)
T TIGR02931 378 LESRIKNQGLELDLILGHS---------KGRFISIDYNIPMV 410 (461)
T ss_pred HHHHHHhcCCCCCEEEECc---------chHHHHHHcCCCEE
Confidence 4445664 5799998543 45688999999986
No 283
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=37.97 E-value=2.1e+02 Score=25.40 Aligned_cols=102 Identities=17% Similarity=0.152 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhcCCCEEEE-cccccCCCcCcHHHHHHHHcCCCcccceeEEEEe-eCCeEEEEEEcCCeEEEEEE--c
Q psy9408 64 LSVAKLLQVIVKKENPQLVIL-GKQSIDSDNNQTGQMLAALLNWPQATFASKIVLK-KNNKILVTQEIEDGKETILL--S 139 (219)
Q Consensus 64 ~~~A~~la~~ik~~~~dlVl~-G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~-~~~~~~~~R~~~gG~~~~~~--~ 139 (219)
......+++.+++.++|.|+. |..| .-+++=.+|..++.|+++=-+..-.. +-..+.+.-...++...... .
T Consensus 63 ~~~v~~~~~~~~~~~~D~IIavGGGS----~iD~aK~ia~~~~~P~iaIPTTagTgse~t~~avi~~~~~~~k~~~~~~~ 138 (351)
T cd08170 63 RAEIERLAEIARDNGADVVIGIGGGK----TLDTAKAVADYLGAPVVIVPTIASTDAPTSALSVIYTDDGEFEEYLFLPR 138 (351)
T ss_pred HHHHHHHHHHHhhcCCCEEEEecCch----hhHHHHHHHHHcCCCEEEeCCccccCcccccceEEECCCCceeeeeeccC
Confidence 345566777788889997764 3322 23477788888899987655443111 00111111111122211111 2
Q ss_pred CCEEEEEecCCC--CCCCCCHHHHHHHccCcc
Q psy9408 140 LPAIITTDLRMN--EPRYVTLMNIIKARKKNI 169 (219)
Q Consensus 140 ~P~vvtv~~~~~--~pr~p~l~~~~~A~~~~i 169 (219)
.|.++-+.+... -|+.-+....|.|-.+-+
T Consensus 139 ~P~~ai~Dp~l~~t~P~~~~a~~~~Dal~h~~ 170 (351)
T cd08170 139 NPDLVLVDTDVIAKAPVRFLVAGIGDALATYF 170 (351)
T ss_pred CCCEEEEChHHHhhCCHHHHHHHHHHHHHHHH
Confidence 476666666433 244445555665554433
No 284
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=37.88 E-value=1.6e+02 Score=21.43 Aligned_cols=94 Identities=12% Similarity=0.133 Sum_probs=49.7
Q ss_pred hHHHHHHHHHhhhhcCCCcEEEEE--EecCcchHHHHHHHHhCCCCEEEEEecC--CCCCHHHHHHHHHHHHHhcCCCEE
Q psy9408 7 DEIAIESAIRLRESSNKIKEIIAI--SCGNKKCKEILQIAMAMGVDRAILIETD--TILQSLSVAKLLQVIVKKENPQLV 82 (219)
Q Consensus 7 D~~Ale~A~~l~e~~g~g~~V~av--~~G~~~~~~~lr~~~a~GaD~v~~v~~~--~~~d~~~~A~~la~~ik~~~~dlV 82 (219)
....-+.+.+++++.+ +..|..- ..+.++..+.++++.+.|+++++++.-= .+.-.......+.++-++.+.++.
T Consensus 16 ~~~~~~l~~~l~~~~~-~~~v~~afle~~~P~~~~~l~~l~~~g~~~i~vvP~fL~~G~h~~~i~~~~~~~~~~~~~~i~ 94 (117)
T cd03414 16 NADVAKIARLLEEGTG-FARVETAFAAATRPSLPEALERLRALGARRVVVLPYLLFTGVLMDRIEEQVAELAAEPGIEFV 94 (117)
T ss_pred HHHHHHHHHHHHHhcC-CCeEEEEEecCCCCCHHHHHHHHHHcCCCEEEEEechhcCCchHHHHHHHHHHHHhCCCceEE
Confidence 3444555666666642 2445433 3446678899999999999999987631 122222334444444332123444
Q ss_pred EEcccccCCCcCcHHHHHHHHc
Q psy9408 83 ILGKQSIDSDNNQTGQMLAALL 104 (219)
Q Consensus 83 l~G~~s~d~~~~~v~~~lA~~L 104 (219)
++ . ..+ ....+...++.++
T Consensus 95 ~~-~-pLG-~~~~l~~~l~~r~ 113 (117)
T cd03414 95 LA-P-PLG-PHPELAEALLERV 113 (117)
T ss_pred EC-C-CCC-CCHHHHHHHHHHH
Confidence 43 2 222 2344555555544
No 285
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=37.79 E-value=1.9e+02 Score=22.40 Aligned_cols=64 Identities=11% Similarity=0.003 Sum_probs=38.4
Q ss_pred HHHH-HHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcC
Q psy9408 40 ILQI-AMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLN 105 (219)
Q Consensus 40 ~lr~-~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg 105 (219)
.++. +-.+|++-...--- .-|++.+.++|.+++++.++|+|++...+.-+.--.++..++..++
T Consensus 24 ~l~~~l~~~G~~v~~~~~v--~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~g~~D~t~~al~~~~~ 88 (152)
T cd00886 24 ALVELLEEAGHEVVAYEIV--PDDKDEIREALIEWADEDGVDLILTTGGTGLAPRDVTPEATRPLLD 88 (152)
T ss_pred HHHHHHHHcCCeeeeEEEc--CCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCcCcHHHHHHHhC
Confidence 3443 55688764332111 2366788888888877547898887665555554455555565554
No 286
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=37.74 E-value=1.1e+02 Score=22.04 Aligned_cols=13 Identities=38% Similarity=0.350 Sum_probs=5.3
Q ss_pred hHHHHHHHHHhhh
Q psy9408 7 DEIAIESAIRLRE 19 (219)
Q Consensus 7 D~~Ale~A~~l~e 19 (219)
|...+..++.+++
T Consensus 73 d~~n~~~~~~~r~ 85 (116)
T PF02254_consen 73 DEENLLIALLARE 85 (116)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 287
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=37.47 E-value=1.9e+02 Score=26.93 Aligned_cols=30 Identities=10% Similarity=0.135 Sum_probs=19.7
Q ss_pred EEEEEecCcc-hHHHHHHHHhCCCCEEEEEe
Q psy9408 27 IIAISCGNKK-CKEILQIAMAMGVDRAILIE 56 (219)
Q Consensus 27 V~av~~G~~~-~~~~lr~~~a~GaD~v~~v~ 56 (219)
-.++.+|-++ .+-.++.+...|+.+++.+.
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaN 209 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIAN 209 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEc
Confidence 3456666543 34566777788888777766
No 288
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=37.42 E-value=1.3e+02 Score=27.07 Aligned_cols=69 Identities=14% Similarity=0.222 Sum_probs=46.0
Q ss_pred hHHHHHHHHhCCCCEEEEEecCC----C-C----CHHHHHHHHHHHHHhc-CCCEEEEcccccCCCcCcHHHHHHHHcC-
Q psy9408 37 CKEILQIAMAMGVDRAILIETDT----I-L----QSLSVAKLLQVIVKKE-NPQLVILGKQSIDSDNNQTGQMLAALLN- 105 (219)
Q Consensus 37 ~~~~lr~~~a~GaD~v~~v~~~~----~-~----d~~~~A~~la~~ik~~-~~dlVl~G~~s~d~~~~~v~~~lA~~Lg- 105 (219)
+.-.++-+-++|+|+++.++-.. + | +....+..+++++++. -.++++.|--. .+...+-.+|..|+
T Consensus 127 ak~vA~lL~~~g~d~vitvDlH~~~~~~fF~ipv~nl~~~~~l~~~i~~~~~~~~vvVsPD~---gg~~ra~~~A~~L~~ 203 (330)
T PRK02812 127 AKLVANLITKAGADRVLAMDLHSAQIQGYFDIPCDHVYGSPVLLDYLASKNLEDIVVVSPDV---GGVARARAFAKKLND 203 (330)
T ss_pred HHHHHHHHHhcCCCEEEEEECCchHHcCccCCCceeeeChHHHHHHHHhcCCCCeEEEEECC---ccHHHHHHHHHHhCC
Confidence 33445555577999999999532 1 2 2234456777887654 35777776644 56778999999995
Q ss_pred CCc
Q psy9408 106 WPQ 108 (219)
Q Consensus 106 ~p~ 108 (219)
.|+
T Consensus 204 ~~~ 206 (330)
T PRK02812 204 APL 206 (330)
T ss_pred CCE
Confidence 664
No 289
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=37.39 E-value=2.3e+02 Score=23.12 Aligned_cols=75 Identities=13% Similarity=0.069 Sum_probs=43.5
Q ss_pred CHhhHHHHHHHHHhhhhcCCCcEEEEEEecCcc--hHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCE
Q psy9408 4 NPFDEIAIESAIRLRESSNKIKEIIAISCGNKK--CKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQL 81 (219)
Q Consensus 4 Np~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~--~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dl 81 (219)
|||-...+....+.+++. |.++......... ..+.++.+..+++|-+++...+ .++.. +..+ ++.+.-+
T Consensus 11 ~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~--~~~~~----~~~~-~~~~ipv 81 (264)
T cd06274 11 NRSFARIAKRLEALARER--GYQLLIACSDDDPETERETVETLIARQVDALIVAGSL--PPDDP----YYLC-QKAGLPV 81 (264)
T ss_pred CchHHHHHHHHHHHHHHC--CCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCC--CchHH----HHHH-HhcCCCE
Confidence 677777776666666665 4676665553222 2356778889999988876532 12221 3333 3344446
Q ss_pred EEEccc
Q psy9408 82 VILGKQ 87 (219)
Q Consensus 82 Vl~G~~ 87 (219)
|+++..
T Consensus 82 V~~~~~ 87 (264)
T cd06274 82 VALDRP 87 (264)
T ss_pred EEecCc
Confidence 666554
No 290
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=37.38 E-value=2.4e+02 Score=23.44 Aligned_cols=91 Identities=10% Similarity=0.147 Sum_probs=55.3
Q ss_pred CCHhhHHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy9408 3 INPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLV 82 (219)
Q Consensus 3 iNp~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlV 82 (219)
=|||-...+....+.+++. |.++..+.-.. ..+.++.+...++|-+++...+.. + ..+.. +++.+.-+|
T Consensus 15 ~~~~~~~~~~gi~~~a~~~--g~~~~~~~~~~--~~~~~~~~~~~~~dgiii~~~~~~-~-----~~~~~-~~~~~ipvV 83 (283)
T cd06279 15 SDPVASQFLAGVAEVLDAA--GVNLLLLPASS--EDSDSALVVSALVDGFIVYGVPRD-D-----PLVAA-LLRRGLPVV 83 (283)
T ss_pred cCccHHHHHHHHHHHHHHC--CCEEEEecCcc--HHHHHHHHHhcCCCEEEEeCCCCC-h-----HHHHH-HHHcCCCEE
Confidence 4888888888888878776 46777665443 346778889999998888653211 1 22333 344555677
Q ss_pred EEcccc------cCCCcCcHHHHHHHHc
Q psy9408 83 ILGKQS------IDSDNNQTGQMLAALL 104 (219)
Q Consensus 83 l~G~~s------~d~~~~~v~~~lA~~L 104 (219)
+++... .+.+..+.+-.++.+|
T Consensus 84 ~~~~~~~~~~~~v~~d~~~~g~~~~~~L 111 (283)
T cd06279 84 VVDQPLPPGVPSVGIDDRAAAREAARHL 111 (283)
T ss_pred EEecCCCCCCCEEeeCcHHHHHHHHHHH
Confidence 776532 2334444444444443
No 291
>KOG0024|consensus
Probab=37.27 E-value=1.6e+02 Score=26.71 Aligned_cols=82 Identities=13% Similarity=0.089 Sum_probs=50.0
Q ss_pred CCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHH
Q psy9408 23 KIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAA 102 (219)
Q Consensus 23 ~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~ 102 (219)
.|.+|-++-+||-. .-.+..|-++||.+++..+-.+ ..| +.+|+.+++.++--.... +...++..+-.
T Consensus 169 ~Gs~vLV~GAGPIG-l~t~l~Aka~GA~~VVi~d~~~--------~Rl-e~Ak~~Ga~~~~~~~~~~--~~~~~~~~v~~ 236 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIG-LLTGLVAKAMGASDVVITDLVA--------NRL-ELAKKFGATVTDPSSHKS--SPQELAELVEK 236 (354)
T ss_pred cCCeEEEECCcHHH-HHHHHHHHHcCCCcEEEeecCH--------HHH-HHHHHhCCeEEeeccccc--cHHHHHHHHHh
Confidence 35788888888764 4567889999999999987421 112 234557777777555443 23345555555
Q ss_pred HcC---CCcccceeEEE
Q psy9408 103 LLN---WPQATFASKIV 116 (219)
Q Consensus 103 ~Lg---~p~vt~v~~l~ 116 (219)
.+| .-+.-+|+.++
T Consensus 237 ~~g~~~~d~~~dCsG~~ 253 (354)
T KOG0024|consen 237 ALGKKQPDVTFDCSGAE 253 (354)
T ss_pred hccccCCCeEEEccCch
Confidence 566 33444444443
No 292
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=36.70 E-value=1.7e+02 Score=25.42 Aligned_cols=53 Identities=11% Similarity=-0.008 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccceeE
Q psy9408 58 DTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASK 114 (219)
Q Consensus 58 ~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~ 114 (219)
|..+++....+...+++.+.++++|+-+.++. .... ..+++..++|+++....
T Consensus 51 D~~~~p~~a~~~~~~li~~~~v~~iiG~~~s~---~~~~-~~~~~~~~ip~i~~~~~ 103 (347)
T cd06336 51 DDKYDPAEAAANARRLVQQDGVKFILGPIGGG---ITAA-QQITERNKVLLLTAYSS 103 (347)
T ss_pred cCCCCHHHHHHHHHHHHhhcCceEEEeCCCCc---hhhh-hhhhhhcCceEEeccCC
Confidence 34678888889999999888898888665442 2333 66888889999976643
No 293
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=36.58 E-value=1.2e+02 Score=25.41 Aligned_cols=47 Identities=13% Similarity=0.000 Sum_probs=27.5
Q ss_pred HHHHHhCCCCEEEEEecCC-CC--CHHHHHHHHHHHHHhcCCCEEEEcccc
Q psy9408 41 LQIAMAMGVDRAILIETDT-IL--QSLSVAKLLQVIVKKENPQLVILGKQS 88 (219)
Q Consensus 41 lr~~~a~GaD~v~~v~~~~-~~--d~~~~A~~la~~ik~~~~dlVl~G~~s 88 (219)
++++-. ++|-+|++.+-. ++ .|...-..+|+.+-+.+.|+|+.|++=
T Consensus 166 i~~lr~-~~D~vIv~~H~G~e~~~~p~~~~~~~A~~l~~~G~DvIiG~H~H 215 (239)
T smart00854 166 IARARK-KADVVIVSLHWGVEYQYEPTDEQRELAHALIDAGADVVIGHHPH 215 (239)
T ss_pred HHHHhc-cCCEEEEEecCccccCCCCCHHHHHHHHHHHHcCCCEEEcCCCC
Confidence 444433 688888877532 22 233333556655555678988877753
No 294
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=36.56 E-value=45 Score=29.81 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHH------cCCCcccceeEE
Q psy9408 66 VAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAAL------LNWPQATFASKI 115 (219)
Q Consensus 66 ~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~------Lg~p~vt~v~~l 115 (219)
.+..+.+++++++||+|++-+-.. ..++..++.+ ++.|+++.++++
T Consensus 88 ~~~~l~~~i~~~~pDvIi~thp~~----~~~~~~~l~~~~~~~~~~~p~~~~~tD~ 139 (382)
T PLN02605 88 VAREVAKGLMKYKPDIIVSVHPLM----QHVPLRVLRWQGKELGKKIPFTTVVTDL 139 (382)
T ss_pred HHHHHHHHHHhcCcCEEEEeCcCc----ccCHHHHHHHHhhccCCCCCEEEEECCC
Confidence 345677889999999999944221 1233333332 478988877776
No 295
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=36.45 E-value=58 Score=31.00 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCccccee
Q psy9408 62 QSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFAS 113 (219)
Q Consensus 62 d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~ 113 (219)
++.... .+++.+.+-+-=+|++|...........--++|++||+|+++...
T Consensus 197 ~~~~i~-~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~~~~pv~tt~~ 247 (564)
T PRK08155 197 DEESIR-DAAAMINAAKRPVLYLGGGVINSGAPARARELAEKAQLPTTMTLM 247 (564)
T ss_pred CHHHHH-HHHHHHHhCCCCEEEECCCccccchHHHHHHHHHHHCCCEEEccc
Confidence 444443 344555544434888887765433456668899999999986433
No 296
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=36.35 E-value=2.6e+02 Score=25.14 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=26.6
Q ss_pred EEEEEecCcchHHHHHHHHhCCCCEEEEEec
Q psy9408 27 IIAISCGNKKCKEILQIAMAMGVDRAILIET 57 (219)
Q Consensus 27 V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~ 57 (219)
-.+...|++..+++++++.+.|+++++.+.-
T Consensus 94 ~~amry~~P~i~~~v~~l~~~gv~~iv~~pL 124 (320)
T COG0276 94 YLAMRYGPPFIEEAVEELKKDGVERIVVLPL 124 (320)
T ss_pred EEeecCCCCcHHHHHHHHHHcCCCeEEEEEC
Confidence 4778888888899999999999999998874
No 297
>PLN00142 sucrose synthase
Probab=36.27 E-value=54 Score=33.14 Aligned_cols=49 Identities=27% Similarity=0.245 Sum_probs=35.3
Q ss_pred HHHHHHHHHHH-Hhc--CCCEEEEcccccCCCcCcHHHHHHHHcCCCcccceeEEE
Q psy9408 64 LSVAKLLQVIV-KKE--NPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIV 116 (219)
Q Consensus 64 ~~~A~~la~~i-k~~--~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~ 116 (219)
..++..+.+.+ ++. .||+|..- ..+++.+|..+|.+||+|++.-.=++.
T Consensus 391 ~~f~~~~~~~~~~~~~~~PDlIHaH----Ywdsg~vA~~La~~lgVP~v~T~HsL~ 442 (815)
T PLN00142 391 ETFAEDAASEILAELQGKPDLIIGN----YSDGNLVASLLAHKLGVTQCTIAHALE 442 (815)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEC----CccHHHHHHHHHHHhCCCEEEEcccch
Confidence 34555566554 333 49998854 347889999999999999997666664
No 298
>PRK07831 short chain dehydrogenase; Provisional
Probab=36.23 E-value=2.5e+02 Score=23.17 Aligned_cols=73 Identities=15% Similarity=0.188 Sum_probs=40.8
Q ss_pred HHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHh-CCCCEEEEEecCCCCCHHHHHHHHHHHHHhc-CCCEEEEccc
Q psy9408 11 IESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMA-MGVDRAILIETDTILQSLSVAKLLQVIVKKE-NPQLVILGKQ 87 (219)
Q Consensus 11 le~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a-~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~-~~dlVl~G~~ 87 (219)
...+.+++++ |.+|+++.-.....++...+... +|..++..+..| -.+...+..++.++.++. ..|+++.-..
T Consensus 32 ~~ia~~l~~~---G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-l~~~~~~~~~~~~~~~~~g~id~li~~ag 106 (262)
T PRK07831 32 SATARRALEE---GARVVISDIHERRLGETADELAAELGLGRVEAVVCD-VTSEAQVDALIDAAVERLGRLDVLVNNAG 106 (262)
T ss_pred HHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEcc-CCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 3455666654 35666554443322233332222 566666665543 456777778887777764 4787766543
No 299
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=36.16 E-value=2e+02 Score=22.08 Aligned_cols=54 Identities=15% Similarity=0.194 Sum_probs=40.7
Q ss_pred CHhhHHHHHHHHHhhhhcCC-CcEEEEEEec--------CcchHHHHHHHHhCCCCEEEEEec
Q psy9408 4 NPFDEIAIESAIRLRESSNK-IKEIIAISCG--------NKKCKEILQIAMAMGVDRAILIET 57 (219)
Q Consensus 4 Np~D~~Ale~A~~l~e~~g~-g~~V~av~~G--------~~~~~~~lr~~~a~GaD~v~~v~~ 57 (219)
+||-.+..+.+..+++.++. ...+....+. .+..++.++++.+.|+.+++++.-
T Consensus 37 d~Y~~~~~~~~~~v~~~l~~~~~~~~~~fqS~~g~~~Wl~P~~~~~l~~l~~~G~~~i~v~p~ 99 (135)
T cd00419 37 DPYPDQCEETARLVAERLGLPFDEYELAYQSRFGPGEWLEPSTDDALEELAKEGVKNVVVVPI 99 (135)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEECC
Confidence 68888899999999988741 1235444442 345889999999999999998874
No 300
>PF13941 MutL: MutL protein
Probab=35.96 E-value=3.8e+02 Score=25.29 Aligned_cols=18 Identities=17% Similarity=0.285 Sum_probs=12.8
Q ss_pred CCCCCCCCCHHHHHHHcc
Q psy9408 149 RMNEPRYVTLMNIIKARK 166 (219)
Q Consensus 149 ~~~~pr~p~l~~~~~A~~ 166 (219)
-...+.+||-..+|++-+
T Consensus 223 ~~~~~i~PTP~AVl~~~~ 240 (457)
T PF13941_consen 223 MVDGPIMPTPAAVLRAAE 240 (457)
T ss_pred HhCCcccCCHHHHHHHHH
Confidence 334577888888888765
No 301
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=35.67 E-value=28 Score=27.24 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=22.4
Q ss_pred CEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 80 QLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 80 dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
.++|+|...+|+ ..++-.||.+||+|++
T Consensus 4 ~i~~~G~~GsGK--st~~~~la~~lg~~~~ 31 (171)
T PRK03731 4 PLFLVGARGCGK--TTVGMALAQALGYRFV 31 (171)
T ss_pred eEEEECCCCCCH--HHHHHHHHHHhCCCEE
Confidence 367888776654 4699999999999987
No 302
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=35.66 E-value=1.9e+02 Score=26.30 Aligned_cols=32 Identities=13% Similarity=0.049 Sum_probs=21.6
Q ss_pred HHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 69 LLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 69 ~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
-+.+.+++.+||+++.|... + + --.+.|.|..
T Consensus 336 ~l~~~i~~~~pDlli~~~~~-----a-~---pl~r~G~P~~ 367 (396)
T cd01979 336 RQLDRIRELRPDLVVTGLGL-----A-N---PLEARGITTK 367 (396)
T ss_pred HHHHHHHhcCCCEEEecccc-----c-C---cHHhCCCcce
Confidence 44567788899999987331 1 1 3567777765
No 303
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=35.52 E-value=2e+02 Score=21.99 Aligned_cols=30 Identities=17% Similarity=-0.010 Sum_probs=16.2
Q ss_pred HHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHH
Q psy9408 39 EILQIAMAMGVDRAILIETDTILQSLSVAKLLQV 72 (219)
Q Consensus 39 ~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~ 72 (219)
+..+++.++|+|+.|... .+...+...|.+
T Consensus 96 ~~~~~l~~~Gvd~~~~~g----t~~~~i~~~l~~ 125 (132)
T TIGR00640 96 QDFDELKEMGVAEIFGPG----TPIPESAIFLLK 125 (132)
T ss_pred HhHHHHHHCCCCEEECCC----CCHHHHHHHHHH
Confidence 445556667777766532 344544444444
No 304
>PF11548 Receptor_IA-2: Protein-tyrosine phosphatase receptor IA-2; InterPro: IPR021613 IA-2 is a protein-tyrosine phosphatase receptor that upon exocytosis, the cytoplasmic domain is cleaved and moves to the nucleus where it enhances transcription of the insulin gene. The mature exodomain of IA-2 participates in adhesion to the extracellular matrix and is self-proteolyzed in vitro by reactive oxygen species which may be a new shedding mechanism. ; PDB: 2QT7_B 3N01_B 3N4W_B 3NG8_A.
Probab=35.45 E-value=50 Score=24.07 Aligned_cols=46 Identities=15% Similarity=0.242 Sum_probs=26.7
Q ss_pred CCCEEEEcccccCC-CcCcHHHHHHHHcCCCcccceeEEEEeeCCeEEE
Q psy9408 78 NPQLVILGKQSIDS-DNNQTGQMLAALLNWPQATFASKIVLKKNNKILV 125 (219)
Q Consensus 78 ~~dlVl~G~~s~d~-~~~~v~~~lA~~Lg~p~vt~v~~l~~~~~~~~~~ 125 (219)
.|-.|++++..... +|.++--.||++|++|.- .-+++.+. +..+++
T Consensus 3 ~yGYIvt~nd~ls~~~G~~l~~~la~~l~l~s~-~F~~i~V~-g~avTF 49 (91)
T PF11548_consen 3 EYGYIVTGNDPLSWDEGSRLMEKLAELLHLPSS-SFINISVV-GPAVTF 49 (91)
T ss_dssp -EEEEEES-TT--HHHHHHHHHHHHHHHTS-GG-GEEEEEEE-TTEEEE
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHHhCCCcc-cceeeeec-CceEEE
Confidence 34567777544332 677889999999999943 34455555 444443
No 305
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=35.42 E-value=1.6e+02 Score=20.79 Aligned_cols=50 Identities=26% Similarity=0.223 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHhhhhcCCCcEEE-E-EEecCcchHHHHHHHHhCCCCEEEEEe
Q psy9408 6 FDEIAIESAIRLRESSNKIKEII-A-ISCGNKKCKEILQIAMAMGVDRAILIE 56 (219)
Q Consensus 6 ~D~~Ale~A~~l~e~~g~g~~V~-a-v~~G~~~~~~~lr~~~a~GaD~v~~v~ 56 (219)
.....-+.+.++++..+ +..|. + +....+..++.++++.+.|+++++++.
T Consensus 14 ~~~~~~~l~~~l~~~~~-~~~v~~afle~~~p~~~~~l~~l~~~g~~~v~vvP 65 (101)
T cd03416 14 AAEALEALAERLRERLP-GDEVELAFLELAEPSLAEALDELAAQGATRIVVVP 65 (101)
T ss_pred HHHHHHHHHHHHHhhCC-CCcEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEe
Confidence 34455566777877652 33443 3 333356678899999999999999876
No 306
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=35.42 E-value=74 Score=33.13 Aligned_cols=65 Identities=22% Similarity=0.223 Sum_probs=41.1
Q ss_pred HhhHHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy9408 5 PFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVIL 84 (219)
Q Consensus 5 p~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~ 84 (219)
++|.+++..++.|++. |.+++.+...|... ..... -+|+.|.-. . +...+.+++++++||.|+.
T Consensus 573 efdy~~v~~~~aLk~~---G~~vI~vn~npetv----s~~~~-~aD~~y~ep----~----~~e~vl~I~~~e~~dgVI~ 636 (1068)
T PRK12815 573 EFDYSSVHAAFALKKE---GYETIMINNNPETV----STDYD-TADRLYFEP----L----TLEDVLNVAEAENIKGVIV 636 (1068)
T ss_pred ccchhHHHHHHHHHHc---CCEEEEEeCCcccc----ccccc-cCceEEEcc----C----CHHHHHHHHhhcCCCEEEE
Confidence 5788888888888765 46777777665321 11111 256665421 1 2466778889999999986
Q ss_pred c
Q psy9408 85 G 85 (219)
Q Consensus 85 G 85 (219)
+
T Consensus 637 ~ 637 (1068)
T PRK12815 637 Q 637 (1068)
T ss_pred e
Confidence 4
No 307
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=35.37 E-value=1.5e+02 Score=25.54 Aligned_cols=62 Identities=16% Similarity=0.168 Sum_probs=40.9
Q ss_pred hCCCCEEEEEecCCCCCHHHHHHHHHHHHHhc-----CCCEEEEcccccCCCcCcHHHHHHHHcCCCc
Q psy9408 46 AMGVDRAILIETDTILQSLSVAKLLQVIVKKE-----NPQLVILGKQSIDSDNNQTGQMLAALLNWPQ 108 (219)
Q Consensus 46 a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~-----~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~ 108 (219)
..|.++..+..++ ....+--+.++.+++++. +.|+|+++.++.+......+.+++..||++.
T Consensus 38 ~~Gi~~r~~~~~~-~~~~~la~~A~~~al~~ag~~~~~Id~li~~~~~~~~~~~~~a~~l~~~lg~~~ 104 (325)
T PRK12879 38 RTGIKERRIAHVE-EYTSDLAIKAAERALARAGLDAEDIDLIIVATTTPDYLFPSTASQVQARLGIPN 104 (325)
T ss_pred ccCceEEEECCCC-CCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCChHHHHHHHHhCCCC
Confidence 3577777766432 333444455555666543 4688888887766666778899999999863
No 308
>PRK05858 hypothetical protein; Provisional
Probab=35.34 E-value=54 Score=31.10 Aligned_cols=53 Identities=11% Similarity=0.057 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccceeE
Q psy9408 61 LQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASK 114 (219)
Q Consensus 61 ~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~ 114 (219)
.++..+.++ ++.+.+-+.=+|++|......+...---++|++||+|+++...+
T Consensus 188 ~~~~~i~~~-~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~tt~~~ 240 (542)
T PRK05858 188 PDPDALARA-AGLLAEAQRPVIMAGTDVWWGHAEAALLRLAEELGIPVLMNGMG 240 (542)
T ss_pred CCHHHHHHH-HHHHHhCCCcEEEECCCccccChHHHHHHHHHHhCCCEEEcCCc
Confidence 355555444 55555545557777876543344556678999999999977655
No 309
>PRK11914 diacylglycerol kinase; Reviewed
Probab=35.34 E-value=2.6e+02 Score=24.12 Aligned_cols=36 Identities=17% Similarity=0.373 Sum_probs=24.2
Q ss_pred CcEEEEE-EecCcchHHHHHHHHhCCCCEEEEEecCC
Q psy9408 24 IKEIIAI-SCGNKKCKEILQIAMAMGVDRAILIETDT 59 (219)
Q Consensus 24 g~~V~av-~~G~~~~~~~lr~~~a~GaD~v~~v~~~~ 59 (219)
+.++..+ +-.+.++.+.++++...|+|.++.+-.|.
T Consensus 39 g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GGDG 75 (306)
T PRK11914 39 GVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGDG 75 (306)
T ss_pred CCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECCch
Confidence 3565433 33344577888888889999888777553
No 310
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=35.33 E-value=1.2e+02 Score=25.29 Aligned_cols=75 Identities=17% Similarity=0.181 Sum_probs=46.7
Q ss_pred CCHhhHHHHHHHHHhhhhcC-CCcEEEEE-EecCcc--hHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcC
Q psy9408 3 INPFDEIAIESAIRLRESSN-KIKEIIAI-SCGNKK--CKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKEN 78 (219)
Q Consensus 3 iNp~D~~Ale~A~~l~e~~g-~g~~V~av-~~G~~~--~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~ 78 (219)
=.|-|..|+|.+...+-.+- -++.+.-+ -+||++ ....++.+.....+++|+..++ ..+.++||.-|++.++..+
T Consensus 86 e~p~Dv~a~E~~~~f~G~YhVL~G~lspl~gigpe~l~i~~L~~Rl~~~~~~EvIlAtnp-TvEGeaTA~YI~~~l~~~~ 164 (198)
T COG0353 86 EEPKDVLALEKTGEFRGLYHVLGGLLSPLDGIGPEDLNIDELLQRLAEGSIKEVILATNP-TVEGEATALYIARLLKPLG 164 (198)
T ss_pred cchHHHHHHHHhcccCeeEEEecCccCcccCCCcccccHHHHHHHHhcCCCceEEEecCC-CccchHHHHHHHHHHhhcC
Confidence 35889999999876653320 00011111 125543 3445555555556699998854 6788999999999998764
No 311
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=35.26 E-value=2.5e+02 Score=24.39 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=18.2
Q ss_pred CCCEEEEcccccCCCcCcHHHHHHHHcCCCccc
Q psy9408 78 NPQLVILGKQSIDSDNNQTGQMLAALLNWPQAT 110 (219)
Q Consensus 78 ~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt 110 (219)
..|+++...| =+..+|+.+|.|.++
T Consensus 251 ~a~l~I~~DS--------Gp~HlAaA~~~P~i~ 275 (334)
T TIGR02195 251 LAKAVVTNDS--------GLMHVAAALNRPLVA 275 (334)
T ss_pred hCCEEEeeCC--------HHHHHHHHcCCCEEE
Confidence 3577775554 367899999999774
No 312
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=35.24 E-value=3.1e+02 Score=25.15 Aligned_cols=75 Identities=21% Similarity=0.280 Sum_probs=48.2
Q ss_pred HhhhhcCCCcEEEEEEecCcc---h-HHHHHHHHhCCCCEEEEEecCC------------------C-C------CHHHH
Q psy9408 16 RLRESSNKIKEIIAISCGNKK---C-KEILQIAMAMGVDRAILIETDT------------------I-L------QSLSV 66 (219)
Q Consensus 16 ~l~e~~g~g~~V~av~~G~~~---~-~~~lr~~~a~GaD~v~~v~~~~------------------~-~------d~~~~ 66 (219)
.++++. +.+|+++++.-+. . +..-+.|..+|+.+.++++-.. . | .-...
T Consensus 17 ~l~e~~--~~eV~av~~d~Gq~~~~~e~a~~~a~~lG~~~~~viD~~~ef~~~~i~~~i~an~~~~g~y~l~t~l~R~~i 94 (385)
T cd01999 17 WLKEKG--GYEVIAVTADVGQPEEEIEAIEEKALKLGAKKHVVVDLREEFVEDYIFPAIQANALYEGTYPLGTALARPLI 94 (385)
T ss_pred HHHHhC--CCeEEEEEEECCCcchhHHHHHHHHHHcCCCEEEEeccHHHHHHHhhHHHHHhCccccCCCcCCcHhHHHHH
Confidence 345553 3489999886432 2 3344678889998666664210 1 1 12235
Q ss_pred HHHHHHHHHhcCCCEEEEcccccCCC
Q psy9408 67 AKLLQVIVKKENPQLVILGKQSIDSD 92 (219)
Q Consensus 67 A~~la~~ik~~~~dlVl~G~~s~d~~ 92 (219)
+..+.+++++.+.+.|..|.+..+.|
T Consensus 95 ~~~l~~~A~~~Ga~~VA~G~t~~gnD 120 (385)
T cd01999 95 AKALVEVAKEEGADAVAHGCTGKGND 120 (385)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCCCc
Confidence 66777888889999999999875444
No 313
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=35.19 E-value=2.6e+02 Score=23.06 Aligned_cols=70 Identities=10% Similarity=0.107 Sum_probs=40.7
Q ss_pred HHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhc-CCCEEEEcc
Q psy9408 11 IESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKE-NPQLVILGK 86 (219)
Q Consensus 11 le~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~-~~dlVl~G~ 86 (219)
.+.|.+++++ |.+|+.+.-.+...++...++...| +++.+..| -.|.+.+.+.+.++.++. .+|+++.-.
T Consensus 14 ~aia~~l~~~---G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~D-v~d~~~~~~~~~~~~~~~g~id~li~na 84 (259)
T PRK08340 14 FNVARELLKK---GARVVISSRNEENLEKALKELKEYG--EVYAVKAD-LSDKDDLKNLVKEAWELLGGIDALVWNA 84 (259)
T ss_pred HHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEcC-CCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 4567777775 4677665443332233333333333 44444433 457788888888877765 589888643
No 314
>PRK06139 short chain dehydrogenase; Provisional
Probab=35.17 E-value=3.1e+02 Score=24.08 Aligned_cols=72 Identities=10% Similarity=0.098 Sum_probs=43.5
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhc-CCCEEEEcc
Q psy9408 10 AIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKE-NPQLVILGK 86 (219)
Q Consensus 10 Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~-~~dlVl~G~ 86 (219)
..+.|.+++++ |.+|+.+.-.....++..+++-..|.+-.+ +..| -.|.+.+.+++.++.+.. +.|+++.-.
T Consensus 20 G~aia~~la~~---G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~-~~~D-v~d~~~v~~~~~~~~~~~g~iD~lVnnA 92 (330)
T PRK06139 20 GQATAEAFARR---GARLVLAARDEEALQAVAEECRALGAEVLV-VPTD-VTDADQVKALATQAASFGGRIDVWVNNV 92 (330)
T ss_pred HHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCcEEE-EEee-CCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 34567777765 467776655544444455566667775433 3322 457777777766666553 579887654
No 315
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=35.15 E-value=2e+02 Score=25.50 Aligned_cols=69 Identities=17% Similarity=0.187 Sum_probs=41.8
Q ss_pred HHHHH-hCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEE-EcccccCCCcCcHHHHHHHHcCCCcccceeE
Q psy9408 41 LQIAM-AMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVI-LGKQSIDSDNNQTGQMLAALLNWPQATFASK 114 (219)
Q Consensus 41 lr~~~-a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl-~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~ 114 (219)
+.+.+ ..|.+-.+......+. +......+.+..++.++|.|+ +|..|. -+++-.+|..++.|+++=-+.
T Consensus 41 v~~~l~~~~~~~~~~~~~~~~p-~~~~v~~~~~~~~~~~~d~iiavGGGs~----~D~aK~ia~~~~~p~i~VPTt 111 (345)
T cd08171 41 IKAALEQSGIEITDFIWYGGES-TYENVERLKKNPAVQEADMIFAVGGGKA----IDTVKVLADKLGKPVFTFPTI 111 (345)
T ss_pred HHHHHHHCCCeEEEEEecCCCC-CHHHHHHHHHHHhhcCCCEEEEeCCcHH----HHHHHHHHHHcCCCEEEecCc
Confidence 33444 4576543332212233 345555666778888999888 555443 348888888899998755543
No 316
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=35.13 E-value=52 Score=24.44 Aligned_cols=37 Identities=24% Similarity=0.235 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcC-CCEEEEcccccCCCcCcHHHHHHHHcCC
Q psy9408 66 VAKLLQVIVKKEN-PQLVILGKQSIDSDNNQTGQMLAALLNW 106 (219)
Q Consensus 66 ~A~~la~~ik~~~-~dlVl~G~~s~d~~~~~v~~~lA~~Lg~ 106 (219)
....|.++.++.+ +.++++|++. ||.++..+|..|.-
T Consensus 50 ~~~~l~~~~~~~~~~~i~itGHSL----GGalA~l~a~~l~~ 87 (140)
T PF01764_consen 50 ILDALKELVEKYPDYSIVITGHSL----GGALASLAAADLAS 87 (140)
T ss_dssp HHHHHHHHHHHSTTSEEEEEEETH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCccchhhccch----HHHHHHHHHHhhhh
Confidence 3455555555543 7899999975 45577777766543
No 317
>cd01025 TOPRIM_recR TOPRIM_recR: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in Escherichia coli RecR. RecR participates in the RecFOR pathway of homologous recombinational repair in prokaryotes. This pathway provides a single-stranded DNA molecule coated with RecA to allow invasion of a homologous molecule. The RecFOR system directs the loading of RecA onto gapped DNA coated with SSB protein. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). In RecR sequences this glutamate in the first turn of the TOPRIM domain is semiconserved, the DXD motif is not conserved.
Probab=35.08 E-value=1.4e+02 Score=22.51 Aligned_cols=70 Identities=19% Similarity=0.197 Sum_probs=45.1
Q ss_pred CCCHhhHHHHHHHHHhhhhcCCCcEEEEE--------EecCc--chHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHH
Q psy9408 2 SINPFDEIAIESAIRLRESSNKIKEIIAI--------SCGNK--KCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQ 71 (219)
Q Consensus 2 ~iNp~D~~Ale~A~~l~e~~g~g~~V~av--------~~G~~--~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la 71 (219)
|=||.|..++|..-..+- .=.++ -+|++ ..+...+.+-..+.+++|+..++ ..+.+++|.-|+
T Consensus 6 VE~~~Dv~~iE~~~~y~G------~Y~VL~G~ispl~gi~p~~l~i~~L~~ri~~~~i~EVIlA~~p-t~EGe~Ta~yi~ 78 (112)
T cd01025 6 VEEPRDVLAIEESGEYRG------LYHVLGGLISPLDGIGPDDLNIDKLLERIAKGQVKEVILATNP-TVEGEATALYIA 78 (112)
T ss_pred ECCHHHHHHHHhhCccce------EEEEeCCCcCCCCCCCccccCHHHHHHHHhcCCCcEEEEecCC-CchHHHHHHHHH
Confidence 347899999988655442 22222 01222 23444445555678999998854 678899999999
Q ss_pred HHHHhcC
Q psy9408 72 VIVKKEN 78 (219)
Q Consensus 72 ~~ik~~~ 78 (219)
+.++..+
T Consensus 79 ~~l~~~~ 85 (112)
T cd01025 79 KLLKDFG 85 (112)
T ss_pred HHHhHcC
Confidence 9998643
No 318
>KOG0781|consensus
Probab=34.76 E-value=1.1e+02 Score=29.20 Aligned_cols=50 Identities=26% Similarity=0.431 Sum_probs=36.1
Q ss_pred hHHHHHHHHhCCCCEEEEEecCC-CCCHHHHHHHHHHHHHhcCCCEEEEccc
Q psy9408 37 CKEILQIAMAMGVDRAILIETDT-ILQSLSVAKLLQVIVKKENPQLVILGKQ 87 (219)
Q Consensus 37 ~~~~lr~~~a~GaD~v~~v~~~~-~~d~~~~A~~la~~ik~~~~dlVl~G~~ 87 (219)
+.++++++-..|.| +++++... --|-...-..|+++++...||+||+=..
T Consensus 455 ak~AI~~a~~~gfD-VvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vge 505 (587)
T KOG0781|consen 455 AKEAIQEARNQGFD-VVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGE 505 (587)
T ss_pred HHHHHHHHHhcCCC-EEEEeccccccCChhHHHHHHHHHhcCCCceEEEehh
Confidence 46677778888999 56666432 3355566788999999999998876433
No 319
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=34.65 E-value=2e+02 Score=25.48 Aligned_cols=91 Identities=21% Similarity=0.149 Sum_probs=57.8
Q ss_pred EEEEecCc---------chHHHHHHHHhCCC-CEEEEEecCCCCCH-HHHHHHHHH---------------HHHhcCCCE
Q psy9408 28 IAISCGNK---------KCKEILQIAMAMGV-DRAILIETDTILQS-LSVAKLLQV---------------IVKKENPQL 81 (219)
Q Consensus 28 ~av~~G~~---------~~~~~lr~~~a~Ga-D~v~~v~~~~~~d~-~~~A~~la~---------------~ik~~~~dl 81 (219)
+.++.|.. -+...++.|...|- -++|+.+....... ..+++.|++ ++++.+.|.
T Consensus 121 ~ILT~~~Sg~lat~~~~tv~~~l~~A~~~g~~~~V~v~EsrP~~~G~~~~a~~L~~~gI~vtlI~Dsa~~~~m~~~~vd~ 200 (303)
T TIGR00524 121 TVLTHCNAGALATSDYGTALGVIRSAWEDGKRIRVIACETRPRNQGSRLTAWELMQDGIDVTLITDSMAAYFMQKGEIDA 200 (303)
T ss_pred EEEEecCCccccccCcchHHHHHHHHHHcCCceEEEECCCCCccchHHHHHHHHHHCCCCEEEEChhHHHHHccccCCCE
Confidence 46677654 35678888888875 44555443223333 556666553 333346899
Q ss_pred EEEcccccCCCcCc-------HHHHHHHHcCCCcccceeEEEEe
Q psy9408 82 VILGKQSIDSDNNQ-------TGQMLAALLNWPQATFASKIVLK 118 (219)
Q Consensus 82 Vl~G~~s~d~~~~~-------v~~~lA~~Lg~p~vt~v~~l~~~ 118 (219)
||+|..+.-.+|+- .-+.+|...+.|++.-+...+++
T Consensus 201 VlvGAd~v~~nG~v~nk~GT~~lA~~Ak~~~vPv~V~a~s~K~~ 244 (303)
T TIGR00524 201 VIVGADRIARNGDVANKIGTYQLAVLAKEFRIPFFVAAPLSTFD 244 (303)
T ss_pred EEEcccEEecCCCEeEhhhHHHHHHHHHHhCCCEEEeccccccc
Confidence 99999888766533 34578888999988666555444
No 320
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=34.60 E-value=1.9e+02 Score=25.55 Aligned_cols=95 Identities=12% Similarity=0.120 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHhcCCCEEE-EcccccCCCcCcHHHHHHHHcCCCcccceeEEE----EeeCCeEEEEEEcCCeEEEEE
Q psy9408 63 SLSVAKLLQVIVKKENPQLVI-LGKQSIDSDNNQTGQMLAALLNWPQATFASKIV----LKKNNKILVTQEIEDGKETIL 137 (219)
Q Consensus 63 ~~~~A~~la~~ik~~~~dlVl-~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~----~~~~~~~~~~R~~~gG~~~~~ 137 (219)
+......+.+.+++.++|.|+ +|.-+. .+++-.+|.++++|++.-=|... .. ...+. .. .+.+....
T Consensus 63 ~~~~v~~~~~~~~~~~~d~iIaiGGGs~----~D~aK~~a~~~~~p~i~iPTT~~t~s~~s-~~a~i-~~--~~~k~~~~ 134 (339)
T cd08173 63 TYEEVEKVESSARDIGADFVIGVGGGRV----IDVAKVAAYKLGIPFISVPTAASHDGIAS-PRASI-KG--NGKPISIK 134 (339)
T ss_pred CHHHHHHHHHHhhhcCCCEEEEeCCchH----HHHHHHHHHhcCCCEEEecCcccCCcccC-CceEE-Ee--CCceEEec
Confidence 445556666677777899888 665443 45888999999999876555442 11 12211 11 13343333
Q ss_pred EcCCEEEEEecCCCC--CCCCCHHHHHHHc
Q psy9408 138 LSLPAIITTDLRMNE--PRYVTLMNIIKAR 165 (219)
Q Consensus 138 ~~~P~vvtv~~~~~~--pr~p~l~~~~~A~ 165 (219)
...|.++-+.+.... |+.-...+++.+-
T Consensus 135 ~~~P~~vi~Dp~l~~tlP~~~~~sg~~Dal 164 (339)
T cd08173 135 AKPPLAVIADTGIIAKAPRRLLAAGCGDII 164 (339)
T ss_pred CCCCeEEEEcHHHHHhCCHHHHHHhHHHHH
Confidence 346877777765432 5555556666664
No 321
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=34.52 E-value=1.9e+02 Score=25.11 Aligned_cols=59 Identities=14% Similarity=-0.020 Sum_probs=37.9
Q ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccce
Q psy9408 51 RAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFA 112 (219)
Q Consensus 51 ~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v 112 (219)
++-++.-|...++........+++++.+.+.|+-+.+|. ....+. .+++..++|+++..
T Consensus 43 ~v~lv~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~--~~~a~~-~~~~~~~ip~i~~~ 101 (347)
T cd06340 43 KLELVFGDSQGNPDIGATEAERLITEEGVVALVGAYQSA--VTLAAS-QVAERYGVPFVVDG 101 (347)
T ss_pred eEEEEEecCCCCHHHHHHHHHHHhccCCceEEecccchH--hHHHHH-HHHHHhCCCEEecc
Confidence 344443344568888888888888877888777655442 222333 46667799998643
No 322
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=34.48 E-value=2.3e+02 Score=26.21 Aligned_cols=29 Identities=21% Similarity=0.063 Sum_probs=22.8
Q ss_pred HHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 72 VIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 72 ~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
+.+++.+||+++.|. -...+|.++|+|++
T Consensus 349 ~~l~~~~pDllig~s---------~~~~~A~k~gIP~v 377 (422)
T TIGR02015 349 EAVLEFEPDLAIGTT---------PLVQFAKEHGIPAL 377 (422)
T ss_pred HHHhhCCCCEEEcCC---------cchHHHHHcCCCEE
Confidence 556778999999763 24568999999987
No 323
>PRK12569 hypothetical protein; Provisional
Probab=34.39 E-value=86 Score=27.04 Aligned_cols=56 Identities=16% Similarity=0.194 Sum_probs=41.0
Q ss_pred EEEEEecCC-C----CCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccce
Q psy9408 51 RAILIETDT-I----LQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFA 112 (219)
Q Consensus 51 ~v~~v~~~~-~----~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v 112 (219)
++-+|.... - .....+|.++.++++..+|++++++-. +..-...|...|++++..+
T Consensus 108 ~l~hVKPHGALYN~~~~d~~la~av~~ai~~~~~~l~l~~~~------~s~~~~~A~~~Gl~~~~E~ 168 (245)
T PRK12569 108 RLQHVKPHGALYMHAARDEALARLLVEALARLDPLLILYCMD------GSATERAARELGQPVVREF 168 (245)
T ss_pred eeEEecCCHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEecC------CcHHHHHHHHcCCCeEEEE
Confidence 566666322 1 245678999999999999999998843 2367789999999887433
No 324
>TIGR03380 agmatine_aguA agmatine deiminase. Members of this family are agmatine deiminase (3.5.3.12), as characterized in Pseudomonas aeruginosa and plants. Related deiminases include the peptidyl-arginine deiminase (3.5.3.15) as found in Porphyromonas gingivalis.
Probab=34.38 E-value=3.6e+02 Score=24.50 Aligned_cols=98 Identities=13% Similarity=0.133 Sum_probs=52.8
Q ss_pred HhhHHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy9408 5 PFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVIL 84 (219)
Q Consensus 5 p~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~ 84 (219)
+....-++.|..|++- ..|+.++ -+. ..+.++..+. +.+.++.-+ .-|.+ ++..+|-.|+-
T Consensus 37 ~~~~~~~~ia~aia~~----e~V~~~~-~~~-~~~~~~~~l~---~~v~~~~~p-~~D~W---------~RD~GP~fv~~ 97 (357)
T TIGR03380 37 PAQKAFAEVAEAIAEF----EPVTMLV-SPA-QYENARAQLP---SNIRVVEMS-SNDAW---------MRDTGPTFVVN 97 (357)
T ss_pred HHHHHHHHHHHHHhCC----CCEEEEE-CHH-HHHHHHHhcc---cCeEEEECC-CCCch---------hhcCCCEEEEc
Confidence 3344456677777652 4677665 333 2334444432 455555532 23433 55566654442
Q ss_pred ccc--------------------ccCCCcCcHHHHHHHHcCCCcccceeEEEEeeCCeEE
Q psy9408 85 GKQ--------------------SIDSDNNQTGQMLAALLNWPQATFASKIVLKKNNKIL 124 (219)
Q Consensus 85 G~~--------------------s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~~~~~~~ 124 (219)
+.. ..-....+++.++|+.+|+|.+.. .+-.+ ||.+.
T Consensus 98 ~~g~~~~vdf~FNgWG~k~~~k~~~~~~D~~v~~~ia~~~g~~~~~~--~lvlE-GG~ie 154 (357)
T TIGR03380 98 DKGEIRGVDWEFNAWGGLVDGLYFPWDKDDLVARKVCELEGIDRYRA--DFVLE-GGSIH 154 (357)
T ss_pred CCCCEEEEeeeeecccCcccCccCCcchHHHHHHHHHHHcCCCcccc--CeEEe-CCcEE
Confidence 221 011123589999999999997764 55555 55544
No 325
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=34.35 E-value=3.4e+02 Score=25.31 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=21.5
Q ss_pred HHHHHh--cCCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 71 QVIVKK--ENPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 71 a~~ik~--~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
.+.+++ .+||+++.+. ..-.+|.++|+|++
T Consensus 372 ~~~i~~~~~~~dliig~s---------~~~~~A~~~gip~~ 403 (454)
T cd01973 372 EKRIKNKGLELDLILGHS---------KGRYIAIDNNIPMV 403 (454)
T ss_pred HHHHHhcCCCCCEEEECC---------ccHHHHHHcCCCEE
Confidence 345555 3699999443 45678999999986
No 326
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=34.28 E-value=3.8e+02 Score=25.24 Aligned_cols=102 Identities=10% Similarity=0.025 Sum_probs=54.5
Q ss_pred CCCCHhhHHHHHHHHHhhhhcCCCcEEEEEEecC----cchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHh
Q psy9408 1 MSINPFDEIAIESAIRLRESSNKIKEIIAISCGN----KKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKK 76 (219)
Q Consensus 1 ~~iNp~D~~Ale~A~~l~e~~g~g~~V~av~~G~----~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~ 76 (219)
|...|.|.....+..++.+.++ -..|..|.... ...+...+.+-..|..=+....-....+...+...|.++ ++
T Consensus 165 fRt~psd~~q~~Ai~~l~~~f~-wk~VaiI~~dd~yG~~~~~~~~~~~~~~Gi~I~~~~~i~~~~~~~d~~~~l~kl-k~ 242 (510)
T cd06364 165 LRTIPNDEHQATAMADIIEYFR-WNWVGTIAADDDYGRPGIEKFREEAEERDICIDFSELISQYSDEEEIQRVVEVI-QN 242 (510)
T ss_pred eEcCCChHHHHHHHHHHHHHcC-CeEEEEEEecCcchHHHHHHHHHHHHHCCcEEEEEEEeCCCCCHHHHHHHHHHH-Hh
Confidence 3456777766666667777664 23556554333 223333344555675433332222223555666777665 55
Q ss_pred cCCCEEEEcccccCCCcCcHHHHHHHHcCCC
Q psy9408 77 ENPQLVILGKQSIDSDNNQTGQMLAALLNWP 107 (219)
Q Consensus 77 ~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p 107 (219)
.++|+|++.....+ .. .-.+=|.++|+.
T Consensus 243 ~~a~vVvl~~~~~~--~~-~ll~qa~~~g~~ 270 (510)
T cd06364 243 STAKVIVVFSSGPD--LE-PLIKEIVRRNIT 270 (510)
T ss_pred cCCeEEEEEeCcHH--HH-HHHHHHHHhCCC
Confidence 78999988665532 12 222344556653
No 327
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=34.25 E-value=1.9e+02 Score=21.40 Aligned_cols=47 Identities=15% Similarity=0.280 Sum_probs=32.0
Q ss_pred HHHHHHHHhhhhcCCCcEEEE--EEecCcchHHHHHHHHhCCCCEEEEEe
Q psy9408 9 IAIESAIRLRESSNKIKEIIA--ISCGNKKCKEILQIAMAMGVDRAILIE 56 (219)
Q Consensus 9 ~Ale~A~~l~e~~g~g~~V~a--v~~G~~~~~~~lr~~~a~GaD~v~~v~ 56 (219)
..-+.+.+++++.+ +..|.. +.++.++.++.++.+.+.|+++++++.
T Consensus 19 ~~~~~~~~l~~~~~-~~~v~~afle~~~P~l~~~l~~l~~~g~~~v~vvP 67 (126)
T PRK00923 19 VVTKIAEKIKEKHP-FYIVEVGFMEFNEPTIPEALKKLIGTGADKIIVVP 67 (126)
T ss_pred HHHHHHHHHHHhCC-CCeEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEc
Confidence 33444555666532 344543 335677789999999999999999876
No 328
>PRK06217 hypothetical protein; Validated
Probab=34.21 E-value=28 Score=27.78 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=22.1
Q ss_pred EEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 81 LVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 81 lVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
++|+|...+|+. .++-+||++||+|++
T Consensus 4 I~i~G~~GsGKS--Tla~~L~~~l~~~~~ 30 (183)
T PRK06217 4 IHITGASGSGTT--TLGAALAERLDIPHL 30 (183)
T ss_pred EEEECCCCCCHH--HHHHHHHHHcCCcEE
Confidence 788888776653 599999999999865
No 329
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=34.20 E-value=1.1e+02 Score=26.34 Aligned_cols=58 Identities=9% Similarity=-0.148 Sum_probs=37.8
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccce
Q psy9408 52 AILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFA 112 (219)
Q Consensus 52 v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v 112 (219)
+-++.-|...++........+++.+.+++.|+-+.+|. . ..-...+++..++|+++..
T Consensus 39 i~l~~~D~~~~p~~a~~~~~~lv~~~~v~~viG~~~s~--~-~~a~~~~~~~~~ip~i~~~ 96 (333)
T cd06359 39 VEVVVEDDGLKPDVAKQAAERLIKRDKVDFVTGVVFSN--V-LLAVVPPVLESGTFYISTN 96 (333)
T ss_pred EEEEecCCCCChHHHHHHHHHHHhhcCCcEEEccCCcH--H-HHHHHHHHHHcCCeEEecC
Confidence 33333344678887778888888887899888544431 1 2222347788899999754
No 330
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=34.04 E-value=67 Score=31.35 Aligned_cols=54 Identities=13% Similarity=0.111 Sum_probs=33.0
Q ss_pred hHHHHHHHHhCCCCEEEEEecCC-CCCH-HHHHHHHHHHHHh-cCCCEEEEcccccC
Q psy9408 37 CKEILQIAMAMGVDRAILIETDT-ILQS-LSVAKLLQVIVKK-ENPQLVILGKQSID 90 (219)
Q Consensus 37 ~~~~lr~~~a~GaD~v~~v~~~~-~~d~-~~~A~~la~~ik~-~~~dlVl~G~~s~d 90 (219)
+++.+.++-+.|+|-+|++.+.. ..|+ ...+...+..+++ .+.|+||.|++-.-
T Consensus 184 a~~~v~~Lr~~gaDvII~LsH~G~~~d~~~~~~en~~~~l~~v~gID~Il~GHsH~~ 240 (626)
T TIGR01390 184 ARKYVPEMKAKGADIIVALAHSGISADPYQPGAENSAYYLTKVPGIDAVLFGHSHAV 240 (626)
T ss_pred HHHHHHHHHHcCCCEEEEEeccCcCCCccccccchHHHHHhcCCCCCEEEcCCCCcc
Confidence 34455666678999999999753 2221 1122223333444 37999999997643
No 331
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=33.94 E-value=1.9e+02 Score=21.14 Aligned_cols=47 Identities=15% Similarity=0.185 Sum_probs=30.0
Q ss_pred HHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEe
Q psy9408 9 IAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIE 56 (219)
Q Consensus 9 ~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~ 56 (219)
.--+.+..+++..+....+.-+= |.+..++.++++...|+.+++++.
T Consensus 17 ~~~~l~~~l~~~~~~~v~~~~lE-~~P~i~~~l~~l~~~G~~~i~lvP 63 (103)
T cd03413 17 VYAALEYVLREEDPANVFVGTVE-GYPGLDDVLAKLKKAGIKKVTLMP 63 (103)
T ss_pred HHHHHHHHHHhcCCCcEEEEEEc-CCCCHHHHHHHHHHcCCCEEEEEe
Confidence 33445555655421112333333 666788999999999999999876
No 332
>PLN02735 carbamoyl-phosphate synthase
Probab=33.75 E-value=1.1e+02 Score=32.12 Aligned_cols=17 Identities=24% Similarity=0.583 Sum_probs=14.2
Q ss_pred HHHHHHHHhcCCCEEEE
Q psy9408 68 KLLQVIVKKENPQLVIL 84 (219)
Q Consensus 68 ~~la~~ik~~~~dlVl~ 84 (219)
..+.+++++++||.|+.
T Consensus 88 e~v~~ii~~e~~D~Iip 104 (1102)
T PLN02735 88 ELVEQVIAKERPDALLP 104 (1102)
T ss_pred HHHHHHHHHhCCCEEEE
Confidence 34778888999999998
No 333
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=33.72 E-value=2.2e+02 Score=25.40 Aligned_cols=76 Identities=13% Similarity=0.115 Sum_probs=49.9
Q ss_pred HHHHHHHHhCCCCEEEEEecCC----------CC---C---HHHHHHHHHHHHHhcC-----------------------
Q psy9408 38 KEILQIAMAMGVDRAILIETDT----------IL---Q---SLSVAKLLQVIVKKEN----------------------- 78 (219)
Q Consensus 38 ~~~lr~~~a~GaD~v~~v~~~~----------~~---d---~~~~A~~la~~ik~~~----------------------- 78 (219)
-+.++.+...|+-++.++++|. .+ | ...-|.++++.+++..
T Consensus 12 s~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~Ipmpgh~~~~~~ 91 (307)
T cd01486 12 CNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSIPMPGHPISESE 91 (307)
T ss_pred HHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeecccccccccccc
Confidence 3578888889999999888652 11 2 1123444444444433
Q ss_pred -----------------CCEEEEcccccCCCcCcHHHHHHHHcCCCcccceeEE
Q psy9408 79 -----------------PQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKI 115 (219)
Q Consensus 79 -----------------~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l 115 (219)
.|+||...-+ ..++.++-.++...+.|+++.+..+
T Consensus 92 ~~~~~~~~~~l~~li~~~DvV~d~tDn--~esR~L~~~~~~~~~k~~I~aalGf 143 (307)
T cd01486 92 VPSTLKDVKRLEELIKDHDVIFLLTDS--RESRWLPTLLSAAKNKLVINAALGF 143 (307)
T ss_pred ccccccCHHHHHHHHhhCCEEEECCCC--HHHHHHHHHHHHHhCCcEEEEEecc
Confidence 4666655543 3578899999999999999855444
No 334
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=33.66 E-value=3.1e+02 Score=23.50 Aligned_cols=71 Identities=11% Similarity=0.136 Sum_probs=43.3
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccc
Q psy9408 10 AIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQS 88 (219)
Q Consensus 10 Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s 88 (219)
.+..|..|+++ |.+|+=++-..+ ..........|.+ ++.+++... ...-+..+.+.+++.+||+|++=+-.
T Consensus 20 cl~LA~~l~~~---g~~v~f~~~~~~--~~~~~~i~~~g~~-v~~~~~~~~--~~~d~~~~~~~l~~~~~d~vV~D~y~ 90 (279)
T TIGR03590 20 CLTLARALHAQ---GAEVAFACKPLP--GDLIDLLLSAGFP-VYELPDESS--RYDDALELINLLEEEKFDILIVDHYG 90 (279)
T ss_pred HHHHHHHHHHC---CCEEEEEeCCCC--HHHHHHHHHcCCe-EEEecCCCc--hhhhHHHHHHHHHhcCCCEEEEcCCC
Confidence 45566666543 367776665543 3334555677875 666664322 22234457778888899999986654
No 335
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=33.56 E-value=94 Score=26.47 Aligned_cols=53 Identities=13% Similarity=0.053 Sum_probs=37.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCccccee
Q psy9408 58 DTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFAS 113 (219)
Q Consensus 58 ~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~ 113 (219)
|...++......+.+++.+.++++|+-+.++ + .......++...++|+++...
T Consensus 47 D~~~~~~~~~~~~~~li~~~~v~aiiG~~~s-~--~~~~v~~~~~~~~ip~i~~~~ 99 (334)
T cd06347 47 DNKSDKEEAANAATRLIDQDKVVAIIGPVTS-G--ATLAAGPIAEDAKVPMITPSA 99 (334)
T ss_pred cCCCChHHHHHHHHHHhcccCeEEEEcCCcc-H--hHHHhHHHHHHCCCeEEcCCC
Confidence 4467888888888899977788998644333 2 222334688899999998544
No 336
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=33.52 E-value=2.6e+02 Score=22.61 Aligned_cols=74 Identities=16% Similarity=0.168 Sum_probs=41.0
Q ss_pred CHhhHHHHHHHHHhhhhcCCCcEEEEEEecCcc--hHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCE
Q psy9408 4 NPFDEIAIESAIRLRESSNKIKEIIAISCGNKK--CKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQL 81 (219)
Q Consensus 4 Np~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~--~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dl 81 (219)
|||-...++...+-+++. |.++..+.-+... ..+.++.+.+.++|-+++...+ .+. ..+ +.+++.+.-+
T Consensus 11 ~~~~~~~~~gi~~~~~~~--g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~~~--~~~----~~~-~~~~~~~ipv 81 (259)
T cd01542 11 SFSTSRTVKGILAALYEN--GYQMLLMNTNFSIEKEIEALELLARQKVDGIILLATT--ITD----EHR-EAIKKLNVPV 81 (259)
T ss_pred cchHHHHHHHHHHHHHHC--CCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCC--CCH----HHH-HHHhcCCCCE
Confidence 677666666555555555 4676655443222 2345777888899988886532 111 122 2333445556
Q ss_pred EEEcc
Q psy9408 82 VILGK 86 (219)
Q Consensus 82 Vl~G~ 86 (219)
|+++.
T Consensus 82 v~~~~ 86 (259)
T cd01542 82 VVVGQ 86 (259)
T ss_pred EEEec
Confidence 66665
No 337
>PRK11081 tRNA guanosine-2'-O-methyltransferase; Provisional
Probab=33.46 E-value=1.3e+02 Score=25.42 Aligned_cols=30 Identities=17% Similarity=0.141 Sum_probs=17.1
Q ss_pred EEEEEecCc---chHHHHHHHHhCCCCEEEEEe
Q psy9408 27 IIAISCGNK---KCKEILQIAMAMGVDRAILIE 56 (219)
Q Consensus 27 V~av~~G~~---~~~~~lr~~~a~GaD~v~~v~ 56 (219)
++++.-+.. +.-..+|.|.++|+++++++.
T Consensus 20 l~vvLd~V~~p~NlGAIiRta~AfGv~~V~~v~ 52 (229)
T PRK11081 20 LTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVW 52 (229)
T ss_pred eEEEEeCCCCcchHHHHHHHHHHhCCCeEEEec
Confidence 444444432 234456777777777776664
No 338
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=33.42 E-value=2.2e+02 Score=24.88 Aligned_cols=64 Identities=19% Similarity=0.144 Sum_probs=40.9
Q ss_pred CCHhhHHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecC-CCCCHHHHHHHHHHHHHh
Q psy9408 3 INPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETD-TILQSLSVAKLLQVIVKK 76 (219)
Q Consensus 3 iNp~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~-~~~d~~~~A~~la~~ik~ 76 (219)
.||+....+ .+.. .|-++.-++-..-+....++.+|+|-+.+-+.= ...||...|++++.+++.
T Consensus 176 ~n~~~l~~i------~e~~----~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~A 240 (267)
T CHL00162 176 QNLLNLQII------IENA----KIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQA 240 (267)
T ss_pred CCHHHHHHH------HHcC----CCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHHHH
Confidence 466665555 4432 233334344444566888999999987765421 246888889988888753
No 339
>PF13941 MutL: MutL protein
Probab=33.32 E-value=2.9e+02 Score=26.05 Aligned_cols=75 Identities=15% Similarity=0.124 Sum_probs=38.7
Q ss_pred CcEEEEEEecCcchHHHHHH-HHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHH
Q psy9408 24 IKEIIAISCGNKKCKEILQI-AMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAA 102 (219)
Q Consensus 24 g~~V~av~~G~~~~~~~lr~-~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~ 102 (219)
|-+++++-+-+.-..++.|+ ++..|+-=....+. .+.. .-|.+ +++.+||+||+-.... +......-..|+
T Consensus 76 GLrmvv~Glv~~~Ta~AAk~AAlgAGA~V~~v~s~--~l~~----~~l~~-i~~~~PDiILLaGGtD-gG~~~~il~nA~ 147 (457)
T PF13941_consen 76 GLRMVVIGLVPDLTAEAAKRAALGAGARVLQVYSY--ELTE----EDLEE-IREIRPDIILLAGGTD-GGNKEVILHNAE 147 (457)
T ss_pred cceEEEEecCHHHHHHHHHHHHhcCCcEEEEEecc--CCCH----HHHHH-HhccCCCEEEEeCCcc-CCchHHHHHHHH
Confidence 34555555555444444443 45555543333332 2222 22333 5667888877655443 344667777777
Q ss_pred HcCC
Q psy9408 103 LLNW 106 (219)
Q Consensus 103 ~Lg~ 106 (219)
+|.-
T Consensus 148 ~La~ 151 (457)
T PF13941_consen 148 MLAE 151 (457)
T ss_pred HHHh
Confidence 7653
No 340
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=33.18 E-value=85 Score=23.60 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=17.1
Q ss_pred EEEcccccCCCcCcHHHHHHHHcCCCccc
Q psy9408 82 VILGKQSIDSDNNQTGQMLAALLNWPQAT 110 (219)
Q Consensus 82 Vl~G~~s~d~~~~~v~~~lA~~Lg~p~vt 110 (219)
|+.|..+ ..++-++|+.||++...
T Consensus 3 I~~g~~~-----~~La~~ia~~L~~~~~~ 26 (116)
T PF13793_consen 3 IFSGSSS-----QDLAERIAEALGIPLGK 26 (116)
T ss_dssp EEESSSG-----HHHHHHHHHHTTS-EE-
T ss_pred EEECCCC-----HHHHHHHHHHhCCceee
Confidence 5555544 56999999999998763
No 341
>PRK00035 hemH ferrochelatase; Reviewed
Probab=33.17 E-value=3.4e+02 Score=23.89 Aligned_cols=53 Identities=23% Similarity=0.259 Sum_probs=36.0
Q ss_pred HhhHHHHHHHHHhhhhcC---CCcE-EEEEEecCcchHHHHHHHHhCCCCEEEEEec
Q psy9408 5 PFDEIAIESAIRLRESSN---KIKE-IIAISCGNKKCKEILQIAMAMGVDRAILIET 57 (219)
Q Consensus 5 p~D~~Ale~A~~l~e~~g---~g~~-V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~ 57 (219)
|.-.+.-+.+..|++.++ .... -.++-.+++..+++++++.+.|+++++++.-
T Consensus 71 Pl~~~t~~q~~~L~~~l~~~~~~~~V~~am~y~~P~i~eal~~l~~~G~~~IivlPL 127 (333)
T PRK00035 71 PLNVITRRQAEALQAELAARGPDLPVYLGMRYWNPSIEEALEALKADGVDRIVVLPL 127 (333)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCceEEEeecCCCCCHHHHHHHHHhcCCCEEEEEEC
Confidence 333344455555665542 1122 3567778888999999999999999999874
No 342
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=33.15 E-value=1.4e+02 Score=24.76 Aligned_cols=49 Identities=14% Similarity=-0.039 Sum_probs=30.3
Q ss_pred HHHHHHHhCCCCEEEEEecCC-C--CCHHHHHHHHHHHHHhcCCCEEEEcccc
Q psy9408 39 EILQIAMAMGVDRAILIETDT-I--LQSLSVAKLLQVIVKKENPQLVILGKQS 88 (219)
Q Consensus 39 ~~lr~~~a~GaD~v~~v~~~~-~--~d~~~~A~~la~~ik~~~~dlVl~G~~s 88 (219)
+.++++-.. +|-++++.+-. + ..|...-..+|+.+-+.+.|+|+.|++=
T Consensus 166 ~~i~~lr~~-~D~vIv~~H~G~e~~~~p~~~~~~la~~l~~~G~D~IiG~H~H 217 (239)
T cd07381 166 ADIAEAKKK-ADIVIVSLHWGVEYSYYPTPEQRELARALIDAGADLVIGHHPH 217 (239)
T ss_pred HHHHHHhhc-CCEEEEEecCcccCCCCCCHHHHHHHHHHHHCCCCEEEcCCCC
Confidence 345555444 88888777532 2 2344455667766656689999977753
No 343
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=33.06 E-value=2.1e+02 Score=26.53 Aligned_cols=67 Identities=19% Similarity=0.215 Sum_probs=47.3
Q ss_pred hHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHc
Q psy9408 37 CKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALL 104 (219)
Q Consensus 37 ~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~L 104 (219)
..+..+.+...|++++.+.+.-...+|..+...+..+.+...++..+-.+.-.| .+-.||--+|+..
T Consensus 148 l~~~~~~~~~~ga~~i~l~DTvG~~~P~~~~~~i~~l~~~v~~~~~l~~H~HnD-~G~AvANslaAv~ 214 (409)
T COG0119 148 LAEVVKAAIEAGADRINLPDTVGVATPNEVADIIEALKANVPNKVILSVHCHND-LGMAVANSLAAVE 214 (409)
T ss_pred HHHHHHHHHHcCCcEEEECCCcCccCHHHHHHHHHHHHHhCCCCCeEEEEecCC-cchHHHHHHHHHH
Confidence 345667788889999888765446799999999999988776566666666555 3445555555543
No 344
>PRK14538 putative bifunctional signaling protein/50S ribosomal protein L9; Provisional
Probab=33.04 E-value=1.8e+02 Score=29.68 Aligned_cols=66 Identities=23% Similarity=0.282 Sum_probs=42.5
Q ss_pred hHHHHHHHHhCCCCEEEEEec-CC-----------CCCHHHHHHHHHHHHHhc--C-CCEEEEcccccCCCcCcHHHHHH
Q psy9408 37 CKEILQIAMAMGVDRAILIET-DT-----------ILQSLSVAKLLQVIVKKE--N-PQLVILGKQSIDSDNNQTGQMLA 101 (219)
Q Consensus 37 ~~~~lr~~~a~GaD~v~~v~~-~~-----------~~d~~~~A~~la~~ik~~--~-~dlVl~G~~s~d~~~~~v~~~lA 101 (219)
|...+.-|+.+|=|.+++=+. +. +-.+..-|+++++.+.+. + -.++++|+...|+| .+|..+|
T Consensus 311 A~~aldlAlgRGGDQvvvk~~~~~~~fyGGks~~~eKrtrVraRvia~~L~elI~~~d~ViI~gH~nPD~D--AlGSala 388 (838)
T PRK14538 311 SQNAIELAQKRGGDQAVVNIENEKIKYFGAKIASLSKQSKVNARVNAQNLVDILKKNPHCFIMGHNHTDLD--SLGSMIA 388 (838)
T ss_pred HHHHHHHHhccCCCEEEEEcCCCCceEeCCCCCcccchhhHHHHHHHHHHHHHHhcCCeEEEEecCCCCch--HHHHHHH
Confidence 455677889999999966553 21 123455555555554432 2 37999999999887 5666665
Q ss_pred HHc
Q psy9408 102 ALL 104 (219)
Q Consensus 102 ~~L 104 (219)
-+.
T Consensus 389 L~~ 391 (838)
T PRK14538 389 FYK 391 (838)
T ss_pred HHH
Confidence 443
No 345
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=33.02 E-value=2.7e+02 Score=25.16 Aligned_cols=102 Identities=13% Similarity=0.010 Sum_probs=54.6
Q ss_pred CCCCHhhHHHHHHHHHhhhhcCCCcEEEEEEecCc----chHHHHHHHHhCCCCEEEEEecCCC-CCH---HHHHHHHHH
Q psy9408 1 MSINPFDEIAIESAIRLRESSNKIKEIIAISCGNK----KCKEILQIAMAMGVDRAILIETDTI-LQS---LSVAKLLQV 72 (219)
Q Consensus 1 ~~iNp~D~~Ale~A~~l~e~~g~g~~V~av~~G~~----~~~~~lr~~~a~GaD~v~~v~~~~~-~d~---~~~A~~la~ 72 (219)
|.+.|.|.+.-....++...+| -..|..|...+. ..+...+.+-..|..=+....-+.. .+. ...-..+.+
T Consensus 150 fRt~p~D~~qa~ai~~li~~~~-w~~Vaii~~~d~yG~~~~~~f~~~~~~~GicIa~~e~~~~~~~~~~~~~~~~~~~~~ 228 (403)
T cd06361 150 LRTVPSDFYQTKAMAHLIKKSG-WNWVGIIITDDDYGRSALETFIIQAEANGVCIAFKEILPASLSDNTKLNRIIRTTEK 228 (403)
T ss_pred eECCCchHhHHHHHHHHHHHcC-CcEEEEEEecCchHHHHHHHHHHHHHHCCeEEEEEEEecCccCcchhHHHHHHHHHH
Confidence 4566777777777777766665 346777754332 2333334444566433222211111 111 134445666
Q ss_pred HHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCC
Q psy9408 73 IVKKENPQLVILGKQSIDSDNNQTGQMLAALLNW 106 (219)
Q Consensus 73 ~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~ 106 (219)
.+++.++|+|++.....+ ...--+=|.++|+
T Consensus 229 ~ik~~~a~vVvv~~~~~~---~~~l~~~a~~~g~ 259 (403)
T cd06361 229 IIEENKVNVIVVFARQFH---VFLLFNKAIERNI 259 (403)
T ss_pred HHhcCCCeEEEEEeChHH---HHHHHHHHHHhCC
Confidence 677789999998776532 1223334566776
No 346
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=32.76 E-value=2.7e+02 Score=22.59 Aligned_cols=63 Identities=19% Similarity=0.158 Sum_probs=41.5
Q ss_pred cEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCC
Q psy9408 25 KEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDS 91 (219)
Q Consensus 25 ~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~ 91 (219)
.+++...+. ..+.+.+++. |+|.++.+..............|.+++++.+...++...-..+.
T Consensus 45 ~~vv~~d~~---~~~~l~~al~-g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~ 107 (233)
T PF05368_consen 45 AEVVEADYD---DPESLVAALK-GVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFGADY 107 (233)
T ss_dssp TEEEES-TT----HHHHHHHHT-TCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEESSGT
T ss_pred ceEeecccC---CHHHHHHHHc-CCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEEecccc
Confidence 455433333 3567888887 99999988753335566777888888888889888865544443
No 347
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=32.68 E-value=1.1e+02 Score=26.42 Aligned_cols=58 Identities=14% Similarity=0.048 Sum_probs=37.6
Q ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccc
Q psy9408 51 RAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATF 111 (219)
Q Consensus 51 ~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~ 111 (219)
++-++..|...++....++..+++.+.+.+.|+-+..+. ......-++...++|+++.
T Consensus 40 ~v~lv~~D~~~~p~~a~~~~~~li~~~~v~~iiG~~~s~---~~~a~~~~~~~~~ip~i~~ 97 (344)
T cd06348 40 PIKLVIEDSGGDEAEAINAFQTLINKDRVLAIIGPTLSQ---QAFAADPIAERAGVPVVGP 97 (344)
T ss_pred EEEEEEecCCCChHHHHHHHHHHhhhcCceEEECCCCcH---HHHhhhHHHHhCCCCEEec
Confidence 333333344678988888999999877887777444331 1122234778899999864
No 348
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=32.66 E-value=2.4e+02 Score=24.28 Aligned_cols=36 Identities=14% Similarity=0.111 Sum_probs=28.4
Q ss_pred CCCEEEEcc--cccCCCcCcHHHHHHHHcCCCccccee
Q psy9408 78 NPQLVILGK--QSIDSDNNQTGQMLAALLNWPQATFAS 113 (219)
Q Consensus 78 ~~dlVl~G~--~s~d~~~~~v~~~lA~~Lg~p~vt~v~ 113 (219)
+-.+|+||. ....-.|-.+++..|+.++.-.+-.++
T Consensus 124 ~grVvIf~gGtg~P~fTTDt~AALrA~ei~ad~ll~at 161 (238)
T COG0528 124 KGRVVIFGGGTGNPGFTTDTAAALRAEEIEADVLLKAT 161 (238)
T ss_pred cCCEEEEeCCCCCCCCchHHHHHHHHHHhCCcEEEEec
Confidence 357888888 666667788999999999998776555
No 349
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=32.60 E-value=3e+02 Score=23.91 Aligned_cols=92 Identities=22% Similarity=0.200 Sum_probs=55.3
Q ss_pred CHhhHHHHHHHHHhhhhcCCCcEEEEEEecC---cchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCC
Q psy9408 4 NPFDEIAIESAIRLRESSNKIKEIIAISCGN---KKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQ 80 (219)
Q Consensus 4 Np~D~~Ale~A~~l~e~~g~g~~V~av~~G~---~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~d 80 (219)
+.|...+.+-..++++++ .+.++.-+--.+ ...++.++.+...|+|=++.... .+...+.++.+++ ||
T Consensus 15 ~g~n~~~~~G~~~~~~~~-~~i~~~~~e~~~~~~~~~~~~~~~~~~~g~dlIi~~g~-------~~~~~~~~vA~~y-Pd 85 (306)
T PF02608_consen 15 KGFNQSAYEGLKRAEKEL-DGIEIIYVENVPETDADYEEAIRQLADQGYDLIIGHGF-------EYSDALQEVAKEY-PD 85 (306)
T ss_dssp SSHHHHHHHHHHHHHHHC-TTEEEEEEES-S-TCHHHHHHHHHHHHTT-SEEEEESG-------GGHHHHHHHHTC--TT
T ss_pred ccHHHHHHHHHHHHHHHc-CCceEEEEecCCccHHHHHHHHHHHHHcCCCEEEEccH-------HHHHHHHHHHHHC-CC
Confidence 356777888888888887 245655544433 45677889999999998877652 3456666777665 55
Q ss_pred --EEEEcccccCC------------CcCcHHHHHHHHc
Q psy9408 81 --LVILGKQSIDS------------DNNQTGQMLAALL 104 (219)
Q Consensus 81 --lVl~G~~s~d~------------~~~~v~~~lA~~L 104 (219)
.+++..+.... +++-+++.+|+++
T Consensus 86 ~~F~~~d~~~~~~~~Nv~~~~f~~~e~~fLaG~~Aa~~ 123 (306)
T PF02608_consen 86 TKFIIIDGYIDAPEPNVISITFREEEASFLAGYLAALM 123 (306)
T ss_dssp SEEEEESS---ST-TTEEEEEE-HHHHHHHHHHHHHHH
T ss_pred CEEEEEecCcCCCCCcEEEEEccccchhHHHHHHHHHH
Confidence 44554433222 1344666666665
No 350
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=32.57 E-value=4.3e+02 Score=25.27 Aligned_cols=79 Identities=10% Similarity=-0.021 Sum_probs=44.1
Q ss_pred HHHHhhhhcCCCcEEEEEEecCcc-hHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCC
Q psy9408 13 SAIRLRESSNKIKEIIAISCGNKK-CKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDS 91 (219)
Q Consensus 13 ~A~~l~e~~g~g~~V~av~~G~~~-~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~ 91 (219)
.|+.+++.. +.++..|.++.-- ....+..++ |.+=.+..- .+.+..-..+. -+++.++++|++|.
T Consensus 88 ~al~~a~~~--~~~ia~vg~~~~~~~~~~~~~ll--~~~i~~~~~----~~~~e~~~~~~-~l~~~G~~~viG~~----- 153 (526)
T TIGR02329 88 QALARARRI--ASSIGVVTHQDTPPALRRFQAAF--NLDIVQRSY----VTEEDARSCVN-DLRARGIGAVVGAG----- 153 (526)
T ss_pred HHHHHHHhc--CCcEEEEecCcccHHHHHHHHHh--CCceEEEEe----cCHHHHHHHHH-HHHHCCCCEEECCh-----
Confidence 445555554 3577777776431 122344444 444222211 12233334443 44567999999654
Q ss_pred CcCcHHHHHHHHcCCCcc
Q psy9408 92 DNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 92 ~~~~v~~~lA~~Lg~p~v 109 (219)
+...+|.++|++.+
T Consensus 154 ----~~~~~A~~~gl~~i 167 (526)
T TIGR02329 154 ----LITDLAEQAGLHGV 167 (526)
T ss_pred ----HHHHHHHHcCCceE
Confidence 67789999999965
No 351
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=32.55 E-value=2.8e+02 Score=22.78 Aligned_cols=47 Identities=13% Similarity=0.051 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCc
Q psy9408 62 QSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQ 108 (219)
Q Consensus 62 d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~ 108 (219)
|.+.+.++|.+++++.++|+||+...+.-+..-.++..+...++-.+
T Consensus 50 d~~~I~~aL~~a~~~~~~DlIITTGGtg~g~rDvTpeAv~~l~~kei 96 (193)
T PRK09417 50 EQDLIEQTLIELVDEMGCDLVLTTGGTGPARRDVTPEATLAVADKEM 96 (193)
T ss_pred CHHHHHHHHHHHhhcCCCCEEEECCCCCCCCCCcHHHHHHHHhCCcC
Confidence 56678888888877667998887655554455566667777777543
No 352
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=32.49 E-value=64 Score=22.50 Aligned_cols=72 Identities=14% Similarity=0.198 Sum_probs=33.6
Q ss_pred CHhhHHHHHHHHHhhhhcCCCc-EEEEEEecCcchHHHHHHHHhCCCCEEEEEecCC-CCCHHHHHHHHHHHHHhcCCCE
Q psy9408 4 NPFDEIAIESAIRLRESSNKIK-EIIAISCGNKKCKEILQIAMAMGVDRAILIETDT-ILQSLSVAKLLQVIVKKENPQL 81 (219)
Q Consensus 4 Np~D~~Ale~A~~l~e~~g~g~-~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~-~~d~~~~A~~la~~ik~~~~dl 81 (219)
||.-...++..++ .. |. .|. ++.. ..+.+..+.....| +++++..- ..+...+.+.|.+.- ...-+
T Consensus 7 ~~~~~~~l~~~l~---~~--~~~~v~--~~~~--~~~~~~~~~~~~~d-~iiid~~~~~~~~~~~~~~i~~~~--~~~~i 74 (112)
T PF00072_consen 7 DPEIRELLEKLLE---RA--GYEEVT--TASS--GEEALELLKKHPPD-LIIIDLELPDGDGLELLEQIRQIN--PSIPI 74 (112)
T ss_dssp SHHHHHHHHHHHH---HT--TEEEEE--EESS--HHHHHHHHHHSTES-EEEEESSSSSSBHHHHHHHHHHHT--TTSEE
T ss_pred CHHHHHHHHHHHH---hC--CCCEEE--EECC--HHHHHHHhcccCce-EEEEEeeecccccccccccccccc--ccccE
Confidence 3444555555555 21 23 333 3333 34556555555544 55555321 445555555443322 24456
Q ss_pred EEEccc
Q psy9408 82 VILGKQ 87 (219)
Q Consensus 82 Vl~G~~ 87 (219)
|+++..
T Consensus 75 i~~t~~ 80 (112)
T PF00072_consen 75 IVVTDE 80 (112)
T ss_dssp EEEESS
T ss_pred EEecCC
Confidence 666544
No 353
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=32.34 E-value=3.3e+02 Score=25.39 Aligned_cols=66 Identities=18% Similarity=0.160 Sum_probs=38.3
Q ss_pred EEEecCcchHHHHHHHHhCCCCEEEEEecCCC-------------CCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCc
Q psy9408 29 AISCGNKKCKEILQIAMAMGVDRAILIETDTI-------------LQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQ 95 (219)
Q Consensus 29 av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~-------------~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~ 95 (219)
+|..++..+-...+-+..+|.+-+..+..+.. -|.+ .+.+.++ +||++|.+.
T Consensus 315 ai~~~~~~~~~la~~L~elG~~v~~~~~~~~~~~~~~~~~~~i~~~D~~----~le~~~~--~~dliig~s--------- 379 (455)
T PRK14476 315 AIAAEPDLLLALGSFLAEMGAEIVAAVTTTKSPALEDLPAEEVLIGDLE----DLEELAE--GADLLITNS--------- 379 (455)
T ss_pred EEEeCHHHHHHHHHHHHHCCCEEEEEEeCCCcHHHHhCCcCcEEeCCHH----HHHHhcc--CCCEEEECc---------
Confidence 44444443444455566677666555543210 1222 3444454 799999544
Q ss_pred HHHHHHHHcCCCcc
Q psy9408 96 TGQMLAALLNWPQA 109 (219)
Q Consensus 96 v~~~lA~~Lg~p~v 109 (219)
-.-.+|.++|+|++
T Consensus 380 ~~~~~a~~~gip~~ 393 (455)
T PRK14476 380 HGRQAAERLGIPLL 393 (455)
T ss_pred hhHHHHHHcCCCEE
Confidence 34678999999997
No 354
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=32.32 E-value=1.2e+02 Score=26.29 Aligned_cols=44 Identities=16% Similarity=0.102 Sum_probs=24.0
Q ss_pred HHHHHHHhCCCCEEEEEecC---CCCCHHHHHHHHHHHHHhcCCCEEEEcc
Q psy9408 39 EILQIAMAMGVDRAILIETD---TILQSLSVAKLLQVIVKKENPQLVILGK 86 (219)
Q Consensus 39 ~~lr~~~a~GaD~v~~v~~~---~~~d~~~~A~~la~~ik~~~~dlVl~G~ 86 (219)
+.+++++..|+||+++=+-. ...||+ .+.+++++++++-|+++-
T Consensus 95 e~i~~~l~~Ga~rViigT~Av~~~~~~p~----~v~~~~~~~G~~~Ivvsi 141 (262)
T PLN02446 95 ENAMSYLDAGASHVIVTSYVFRDGQIDLE----RLKDLVRLVGKQRLVLDL 141 (262)
T ss_pred HHHHHHHHcCCCEEEEchHHHhCCCCCHH----HHHHHHHHhCCCCEEEEE
Confidence 66777888888888772210 012354 344445555555555443
No 355
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=32.21 E-value=3.2e+02 Score=23.21 Aligned_cols=79 Identities=14% Similarity=0.225 Sum_probs=46.4
Q ss_pred CHhhHHHHHHHHHhhhhcCCCcEEEEEEecCcc--hHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCE
Q psy9408 4 NPFDEIAIESAIRLRESSNKIKEIIAISCGNKK--CKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQL 81 (219)
Q Consensus 4 Np~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~--~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dl 81 (219)
|||-...+....+.+++++.|.+++........ ..+.++.++..++|-+++... ++......+.++ ++.+.-+
T Consensus 11 ~~~~~~~~~gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~----~~~~~~~~~~~~-~~~giPv 85 (303)
T cd01539 11 DTFISLVRKNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLV----DPTAAQTVINKA-KQKNIPV 85 (303)
T ss_pred ChHHHHHHHHHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecC----chhhHHHHHHHH-HHCCCCE
Confidence 788887777766667663213455544433221 124678899999998887542 233334555544 4455557
Q ss_pred EEEccc
Q psy9408 82 VILGKQ 87 (219)
Q Consensus 82 Vl~G~~ 87 (219)
|+++..
T Consensus 86 V~~~~~ 91 (303)
T cd01539 86 IFFNRE 91 (303)
T ss_pred EEeCCC
Confidence 777653
No 356
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=32.19 E-value=3.8e+02 Score=25.06 Aligned_cols=31 Identities=26% Similarity=0.298 Sum_probs=22.3
Q ss_pred HHHHHH-hcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 70 LQVIVK-KENPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 70 la~~ik-~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
+.+.++ +.+||+++.+. -.-.+|.+||+|++
T Consensus 375 l~~~l~~~~~~dllig~s---------~~~~~A~klgip~~ 406 (457)
T TIGR02932 375 LEKRIKAKLDIDLIMGHS---------KGRYVAIDANIPMV 406 (457)
T ss_pred HHHHHhhcCCCCEEEECC---------chHHHHHHcCCCEE
Confidence 334444 46899999544 35688999999987
No 357
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=32.14 E-value=3e+02 Score=25.20 Aligned_cols=40 Identities=20% Similarity=0.350 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhcCCCEEEE-c-ccccCCCcCcHHHHHHHHcCCC
Q psy9408 63 SLSVAKLLQVIVKKENPQLVIL-G-KQSIDSDNNQTGQMLAALLNWP 107 (219)
Q Consensus 63 ~~~~A~~la~~ik~~~~dlVl~-G-~~s~d~~~~~v~~~lA~~Lg~p 107 (219)
+......-++..++.+||.|+. | .++.| ++=.++....-|
T Consensus 71 ~~~~v~~~~~~~~~~~~D~iIalGGGS~~D-----~AK~i~~~~~~~ 112 (377)
T COG1454 71 TIETVEAGAEVAREFGPDTIIALGGGSVID-----AAKAIALLAENP 112 (377)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCccHHH-----HHHHHHHHhhCC
Confidence 3455566667778889998774 3 33332 555566555555
No 358
>cd06067 H2MP_MemB-H2evol Endopeptidases belonging to membrane-bound hydrogen evolving hydrogenase group. In hydrogenase 3 from E coli, the maturation of the large subunit (HycE) requires the cleavage of a C-terminal peptide by the endopeptidase HycI, before the final formation of the [NiFe] metallocenter. HycI protease is a monomer and lacks characteristic signature motifs of serine, zinc, cysteine, or acid proteases and thus its cleavage reaction is not inhibited by conventional inhibitors of serine and metalloproteases. Such hydrogenases as those from Methanosarcina barkeri (EchCE) and Rhodospirillum rubrum (CooLH) also belong to this group of membrane-bound hydrogen evolving hydrogenase. Sequence comparison of the large subunits from related hydrogenase indicates that in contrast to EchE (358 amino acids) and CooH (361 amino acids), the large subunit HycE (569 amino acids) contains an extra carboxy-terminal stretch of 32 amino acids that is cleaved during the maturation process. In
Probab=32.12 E-value=1.6e+02 Score=22.35 Aligned_cols=48 Identities=15% Similarity=0.135 Sum_probs=32.8
Q ss_pred hHHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEec
Q psy9408 7 DEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIET 57 (219)
Q Consensus 7 D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~ 57 (219)
|-..+..+.+|++... ..|.++-.|.. -...+......|.|++++++.
T Consensus 13 DgvG~~v~~~L~~~~~--~~v~vid~gt~-~~~~~~~l~~~~~d~vIiVDA 60 (136)
T cd06067 13 DGAGPLLAEKLEDLPN--PNWLVIDGGTV-PENFTGKIREEKPDLIVIVDA 60 (136)
T ss_pred CcHHHHHHHHHHhcCC--CCEEEEECCCC-HHHHHHHHHhcCCCEEEEEEC
Confidence 7778888999987642 34777766653 344444444469999999984
No 359
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=31.92 E-value=2.9e+02 Score=22.64 Aligned_cols=80 Identities=14% Similarity=0.121 Sum_probs=48.0
Q ss_pred CCHhhHHHHHHHHHhhhhcCCCcEEEEEEecCcc--hHHHHHHHHhCCCCEEEEEecCC-CCCHHHHHHHHHHHHHhcCC
Q psy9408 3 INPFDEIAIESAIRLRESSNKIKEIIAISCGNKK--CKEILQIAMAMGVDRAILIETDT-ILQSLSVAKLLQVIVKKENP 79 (219)
Q Consensus 3 iNp~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~--~~~~lr~~~a~GaD~v~~v~~~~-~~d~~~~A~~la~~ik~~~~ 79 (219)
-|||-...++...+.++++ |..+.....+... ..+.++.++++++|-+++..... ..++. ...+.++ ++.+.
T Consensus 10 ~~~~~~~~~~gi~~~~~~~--g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~--~~~~~~~-~~~~i 84 (273)
T cd01541 10 SDYIFPSIIRGIESVLSEK--GYSLLLASTNNDPERERKCLENMLSQGIDGLIIEPTKSALPNPN--IDLYLKL-EKLGI 84 (273)
T ss_pred cchhHHHHHHHHHHHHHHc--CCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecccccccccc--HHHHHHH-HHCCC
Confidence 4788888888888888876 4666554433221 23567889999999888754221 11111 1233333 44455
Q ss_pred CEEEEccc
Q psy9408 80 QLVILGKQ 87 (219)
Q Consensus 80 dlVl~G~~ 87 (219)
-+|+++..
T Consensus 85 pvV~~~~~ 92 (273)
T cd01541 85 PYVFINAS 92 (273)
T ss_pred CEEEEecC
Confidence 67777653
No 360
>PRK09186 flagellin modification protein A; Provisional
Probab=31.92 E-value=2.8e+02 Score=22.54 Aligned_cols=72 Identities=17% Similarity=0.103 Sum_probs=43.0
Q ss_pred HHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHH-hCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcC-CCEEEEcc
Q psy9408 11 IESAIRLRESSNKIKEIIAISCGNKKCKEILQIAM-AMGVDRAILIETDTILQSLSVAKLLQVIVKKEN-PQLVILGK 86 (219)
Q Consensus 11 le~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~-a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~-~dlVl~G~ 86 (219)
...|.+|.++ |.+|+.+.-.++..++..+++. .+|...+..+..| -.|+..+..++.++.++.+ +|+|+.-.
T Consensus 18 ~~~a~~l~~~---g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D-l~d~~~~~~~~~~~~~~~~~id~vi~~A 91 (256)
T PRK09186 18 SALVKAILEA---GGIVIAADIDKEALNELLESLGKEFKSKKLSLVELD-ITDQESLEEFLSKSAEKYGKIDGAVNCA 91 (256)
T ss_pred HHHHHHHHHC---CCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEec-CCCHHHHHHHHHHHHHHcCCccEEEECC
Confidence 4557777765 4688776555444444444442 2354555443423 4577778888887766554 69888654
No 361
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=31.84 E-value=4.5e+02 Score=24.89 Aligned_cols=66 Identities=12% Similarity=0.114 Sum_probs=42.5
Q ss_pred hHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcC-C-CEEEEcccccCCCcCcHHHHHHHH
Q psy9408 37 CKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKEN-P-QLVILGKQSIDSDNNQTGQMLAAL 103 (219)
Q Consensus 37 ~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~-~-dlVl~G~~s~d~~~~~v~~~lA~~ 103 (219)
..+.++.+...|+|.+.+.+.-....|..+.+.+..+.+..+ + ++.| |-..-+..+-.++-.+|+.
T Consensus 148 l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l-~~H~HND~GlAvANalaAv 215 (494)
T TIGR00973 148 LARIVEAAINAGATTINIPDTVGYALPAEYGNLIKGLRENVPNIDKAIL-SVHCHNDLGLAVANSLAAV 215 (494)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCCCCHHHHHHHHHHHHHhhccccCceE-EEEeCCCCChHHHHHHHHH
Confidence 456678888999998777654446799999999988877653 2 3333 3333333344555555554
No 362
>PRK05855 short chain dehydrogenase; Validated
Probab=31.74 E-value=3.8e+02 Score=24.77 Aligned_cols=27 Identities=7% Similarity=0.201 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHHHHhc-CCCEEEEcc
Q psy9408 60 ILQSLSVAKLLQVIVKKE-NPQLVILGK 86 (219)
Q Consensus 60 ~~d~~~~A~~la~~ik~~-~~dlVl~G~ 86 (219)
-.|+....+.+.++.++. .+|+++.-.
T Consensus 373 v~~~~~~~~~~~~~~~~~g~id~lv~~A 400 (582)
T PRK05855 373 VSDADAMEAFAEWVRAEHGVPDIVVNNA 400 (582)
T ss_pred CCCHHHHHHHHHHHHHhcCCCcEEEECC
Confidence 346667777777766554 468777654
No 363
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=31.71 E-value=2.8e+02 Score=24.57 Aligned_cols=62 Identities=23% Similarity=0.379 Sum_probs=36.4
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccc
Q psy9408 10 AIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQS 88 (219)
Q Consensus 10 Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s 88 (219)
+...+..+++. |.+|+++...+.. . +..+ +|+.+.++ ..|+ ..|.++++++++|+|+.+...
T Consensus 11 ~~~l~~aa~~~---G~~v~~~d~~~~~--~----~~~~-ad~~~~~~---~~d~----~~l~~~~~~~~id~v~~~~e~ 72 (380)
T TIGR01142 11 GKEVAIEAQRL---GVEVIAVDRYANA--P----AMQV-AHRSYVIN---MLDG----DALRAVIEREKPDYIVPEIEA 72 (380)
T ss_pred HHHHHHHHHHc---CCEEEEEeCCCCC--c----hhhh-CceEEEcC---CCCH----HHHHHHHHHhCCCEEEeccCc
Confidence 44444444443 4688888776532 1 1122 67776654 2344 456677888889999876543
No 364
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=31.70 E-value=32 Score=27.57 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=18.5
Q ss_pred EEEcccccCCCcCcHHHHHHHHcCCCcccc
Q psy9408 82 VILGKQSIDSDNNQTGQMLAALLNWPQATF 111 (219)
Q Consensus 82 Vl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~ 111 (219)
|-.+.+. +..+..++-+||++||++++..
T Consensus 2 ITIsr~~-Gsgg~~Ia~~LA~~Lg~~~~d~ 30 (179)
T PF13189_consen 2 ITISRQY-GSGGREIAERLAEKLGYPYYDR 30 (179)
T ss_dssp EEEEE-T-TSSHHHHHHHHHHHCT--EE-H
T ss_pred EEECCCC-CCChHHHHHHHHHHcCCccCCH
Confidence 3444444 3456889999999999999755
No 365
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=31.62 E-value=37 Score=30.28 Aligned_cols=28 Identities=21% Similarity=0.125 Sum_probs=24.6
Q ss_pred CEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 80 QLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 80 dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
-++++|-|++|+. +++-.||.++|.+.|
T Consensus 5 ~i~I~GPTAsGKT--~lai~LAk~~~~eII 32 (308)
T COG0324 5 LIVIAGPTASGKT--ALAIALAKRLGGEII 32 (308)
T ss_pred EEEEECCCCcCHH--HHHHHHHHHcCCcEE
Confidence 4789999999874 799999999999877
No 366
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=31.60 E-value=3.1e+02 Score=22.93 Aligned_cols=76 Identities=14% Similarity=0.129 Sum_probs=42.9
Q ss_pred CHhhHHHHHHHHHhhhhcCCCcEEEEEEecCcch---HHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCC
Q psy9408 4 NPFDEIAIESAIRLRESSNKIKEIIAISCGNKKC---KEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQ 80 (219)
Q Consensus 4 Np~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~---~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~d 80 (219)
|||....+....+.+++. |.++..+..+..+. .+.++.+++.++|-+++...+. ......+.++ ++.+.-
T Consensus 11 ~~~~~~~~~gi~~~a~~~--g~~~~~~~~~~~~~~~~~~~l~~~~~~~~dgiii~~~~~----~~~~~~i~~~-~~~~iP 83 (294)
T cd06316 11 SDWSNAQVRGAKDEFAKL--GIEVVATTDAQFDPAKQVADIETTISQKPDIIISIPVDP----VSTAAAYKKV-AEAGIK 83 (294)
T ss_pred ChHHHHHHHHHHHHHHHc--CCEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCc----hhhhHHHHHH-HHcCCc
Confidence 678777776666666665 45665443332222 3567788899999888754221 1222344443 334444
Q ss_pred EEEEcc
Q psy9408 81 LVILGK 86 (219)
Q Consensus 81 lVl~G~ 86 (219)
+|+++.
T Consensus 84 vV~~~~ 89 (294)
T cd06316 84 LVFMDN 89 (294)
T ss_pred EEEecC
Confidence 666654
No 367
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=31.54 E-value=3.7e+02 Score=23.80 Aligned_cols=81 Identities=23% Similarity=0.290 Sum_probs=47.3
Q ss_pred HhhHHHHHHHHHhhhhcCC---CcE-EEEEEecCcchHHHHHHHHhCCCCEEEEEecCC---CCCHHHHHHHHHHHHHhc
Q psy9408 5 PFDEIAIESAIRLRESSNK---IKE-IIAISCGNKKCKEILQIAMAMGVDRAILIETDT---ILQSLSVAKLLQVIVKKE 77 (219)
Q Consensus 5 p~D~~Ale~A~~l~e~~g~---g~~-V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~---~~d~~~~A~~la~~ik~~ 77 (219)
|.-...-..|.+|++.++. ..+ ..|...|++..++.++++.+.|+|+++++.--. ...+-.+-+.+.+++++.
T Consensus 66 PL~~~t~~qa~~l~~~L~~~~~~~~V~~amry~~P~i~~~l~~l~~~g~~~ivvlPLyPqyS~~ttgs~~~~~~~~~~~~ 145 (316)
T PF00762_consen 66 PLNEITRRQAEALQQRLDERGVDVEVYYAMRYGPPSIEDALEELKADGVDRIVVLPLYPQYSSSTTGSYLDEVERALKKS 145 (316)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-EEEEEEEEESSSSSBHHHHHHHHHHTT-SEEEEEESSSS--TTTHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHhcCCCeeEEEEeccCCCCHHHHHHHHHHcCCCeEEEEeCCCchhHhhHHHHHHHHHHHHHhc
Confidence 3344444555556655420 122 367888999999999999999999999998422 223444444444444442
Q ss_pred --CCCEEEEc
Q psy9408 78 --NPQLVILG 85 (219)
Q Consensus 78 --~~dlVl~G 85 (219)
.+.+-+..
T Consensus 146 ~~~~~~~~i~ 155 (316)
T PF00762_consen 146 RPNPKVRFIP 155 (316)
T ss_dssp HSSSEEEEE-
T ss_pred CCCCeEEEeC
Confidence 34444443
No 368
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=31.47 E-value=78 Score=28.33 Aligned_cols=41 Identities=10% Similarity=0.098 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccc
Q psy9408 66 VAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATF 111 (219)
Q Consensus 66 ~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~ 111 (219)
.++++.+...+.++|-|.+|. -+..++..+|.+||+|+++.
T Consensus 265 m~~ai~~v~~~~G~Dpv~~gG-----aG~~~a~~lA~~lg~~~v~~ 305 (318)
T TIGR03123 265 LTEAIEEVLERYGLKTVVAAG-----AGEFLAKEAAARLGRECIDV 305 (318)
T ss_pred HHHHHHHHHHHcCCCCeEEec-----chHHHHHHHHHHcCCCeecH
Confidence 444455555556666555443 34679999999999997743
No 369
>COG3150 Predicted esterase [General function prediction only]
Probab=31.35 E-value=2.5e+02 Score=23.17 Aligned_cols=60 Identities=13% Similarity=-0.018 Sum_probs=42.8
Q ss_pred hCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcC-CCEEEEcccccCCCcCcHHHHHHHHcCCCccc
Q psy9408 46 AMGVDRAILIETDTILQSLSVAKLLQVIVKKEN-PQLVILGKQSIDSDNNQTGQMLAALLNWPQAT 110 (219)
Q Consensus 46 a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~-~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt 110 (219)
..+-+--|.+-.. .-++...++-|-++|.+.+ .+..+||..- ||-.+-+|+++.|++.+-
T Consensus 26 ~~~~~i~y~~p~l-~h~p~~a~~ele~~i~~~~~~~p~ivGssL----GGY~At~l~~~~Girav~ 86 (191)
T COG3150 26 EDVRDIEYSTPHL-PHDPQQALKELEKAVQELGDESPLIVGSSL----GGYYATWLGFLCGIRAVV 86 (191)
T ss_pred ccccceeeecCCC-CCCHHHHHHHHHHHHHHcCCCCceEEeecc----hHHHHHHHHHHhCChhhh
Confidence 3444444443321 4578877777888888765 7899999864 567999999999999763
No 370
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=31.09 E-value=2.1e+02 Score=20.88 Aligned_cols=91 Identities=13% Similarity=0.126 Sum_probs=56.2
Q ss_pred HHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHh-cCCCEEEE--
Q psy9408 8 EIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKK-ENPQLVIL-- 84 (219)
Q Consensus 8 ~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~-~~~dlVl~-- 84 (219)
+.+++.|.++.+. |.++.| + +...+.|++ .|.+--.+.....+-+ ..+.+.+++ .+.|+|+.
T Consensus 12 ~~~~~~a~~l~~~---G~~i~A-T---~gTa~~L~~---~Gi~~~~v~~~~~~g~-----~~i~~~i~~~g~idlVIn~~ 76 (112)
T cd00532 12 AMLVDLAPKLSSD---GFPLFA-T---GGTSRVLAD---AGIPVRAVSKRHEDGE-----PTVDAAIAEKGKFDVVINLR 76 (112)
T ss_pred HHHHHHHHHHHHC---CCEEEE-C---cHHHHHHHH---cCCceEEEEecCCCCC-----cHHHHHHhCCCCEEEEEEcC
Confidence 6678888888854 467764 2 223455554 6876333322111122 346778888 89999887
Q ss_pred -ccccc-CCCcCcHHHHHHHHcCCCccccee
Q psy9408 85 -GKQSI-DSDNNQTGQMLAALLNWPQATFAS 113 (219)
Q Consensus 85 -G~~s~-d~~~~~v~~~lA~~Lg~p~vt~v~ 113 (219)
|.+.. ....+..-=|.|...++|++|+..
T Consensus 77 ~~~~~~~~~~dg~~iRR~A~~~~Ip~~T~~~ 107 (112)
T cd00532 77 DPRRDRCTDEDGTALLRLARLYKIPVTTPNA 107 (112)
T ss_pred CCCcccccCCChHHHHHHHHHcCCCEEECHH
Confidence 33311 122366777889999999999864
No 371
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=31.04 E-value=3.6e+02 Score=23.55 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhcCCCEEEEcc
Q psy9408 66 VAKLLQVIVKKENPQLVILGK 86 (219)
Q Consensus 66 ~A~~la~~ik~~~~dlVl~G~ 86 (219)
+...+.+.+++.+||+|++..
T Consensus 153 ~~~~~~~~l~~~~~Dlivlag 173 (286)
T PRK13011 153 QEAQVLDVVEESGAELVVLAR 173 (286)
T ss_pred hHHHHHHHHHHhCcCEEEEeC
Confidence 344566667777777777643
No 372
>COG2138 Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]
Probab=31.03 E-value=3.3e+02 Score=23.27 Aligned_cols=105 Identities=25% Similarity=0.227 Sum_probs=64.1
Q ss_pred CHhhHHHHHHHHHhhhhcCCCcEEEEEE--ecCcchHHHHHHHHhCCCCEEEEEec----------C--------C-CC-
Q psy9408 4 NPFDEIAIESAIRLRESSNKIKEIIAIS--CGNKKCKEILQIAMAMGVDRAILIET----------D--------T-IL- 61 (219)
Q Consensus 4 Np~D~~Ale~A~~l~e~~g~g~~V~av~--~G~~~~~~~lr~~~a~GaD~v~~v~~----------~--------~-~~- 61 (219)
+++-+.+...+-+++++.. ...|..-. +..++.++.++.+.++|+++++++.- | . .+
T Consensus 15 p~~~~~~~~~a~~~~~~~~-~~~v~~~f~e~~~P~l~~~~~al~~~G~~~ivvVPlfl~~g~H~~~DIP~~L~~~~~~~~ 93 (245)
T COG2138 15 PRGREVAEAIAARLEERGD-FPPVRVAFLELAEPSLREALQALVARGVDRIVVVPLFLAAGYHTKRDIPAELGLARQAHP 93 (245)
T ss_pred ccHHHHHHHHHHHHHhhcC-CccchhHHHHhcCCCHHHHHHHHHhcCCCeEEEeehhhccCchhhcccHHHHHHhhhcCC
Confidence 4445555555557777642 22332222 23346788999999999999998862 0 0 01
Q ss_pred --C--H----HHHHHHHHHHHHhcC--C--C---EEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 62 --Q--S----LSVAKLLQVIVKKEN--P--Q---LVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 62 --d--~----~~~A~~la~~ik~~~--~--d---lVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
+ + ..+.+.+.+-+.+.. + + +++.+..|++.+....-..++..|+-...
T Consensus 94 ~~~~~p~G~~~~~~~~~~~r~~~~~~~~~~~~~~vv~~~~Gs~~~~~~~~~~~va~~l~~~~~ 156 (245)
T COG2138 94 QVDLSPLGTHPAVLDLLGQRLEDAGADEADDAERVVLEPRGSSDPIANAAVYRVARLLGEGTA 156 (245)
T ss_pred cccccccCCchHHHHHHHHHHHHhccccccccceEEEeccCCCcccchhHHHHHHHHHHhccC
Confidence 1 1 123344444333322 1 2 89999999998888888888888876553
No 373
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.76 E-value=1.8e+02 Score=22.48 Aligned_cols=84 Identities=7% Similarity=-0.018 Sum_probs=50.3
Q ss_pred EecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHH--HHcCCCc
Q psy9408 31 SCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLA--ALLNWPQ 108 (219)
Q Consensus 31 ~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA--~~Lg~p~ 108 (219)
++.+.-..+.++...+.|...+|.--.|.+-....-...+++++++-+.++-+.+.+..+-.-.+|=.+.. ..++-|+
T Consensus 11 sVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~f~~Al~eaegPV 90 (130)
T COG3453 11 SVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGGITEADVEAFQRALDEAEGPV 90 (130)
T ss_pred eecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCCCCHHHHHHHHHHHHHhCCCE
Confidence 44444345668888899999988876554323333456677778877777666666553333333433322 3456677
Q ss_pred ccceeE
Q psy9408 109 ATFASK 114 (219)
Q Consensus 109 vt~v~~ 114 (219)
+.+|.+
T Consensus 91 layCrs 96 (130)
T COG3453 91 LAYCRS 96 (130)
T ss_pred EeeecC
Confidence 766654
No 374
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=30.75 E-value=54 Score=23.31 Aligned_cols=88 Identities=18% Similarity=0.120 Sum_probs=51.3
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEe--cCC-CCCHHHHHHHHHHHHHhcCCCEEEEcc
Q psy9408 10 AIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIE--TDT-ILQSLSVAKLLQVIVKKENPQLVILGK 86 (219)
Q Consensus 10 Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~--~~~-~~d~~~~A~~la~~ik~~~~dlVl~G~ 86 (219)
+++.|.+|.+. |.++.| +- .+.+.+...|.+-.-+++ ... ..+... .+.+.+++.+.|+|++=.
T Consensus 2 ~~~~a~~l~~l---G~~i~A-T~------gTa~~L~~~Gi~~~~v~~~~~~~~~~~g~~---~i~~~i~~~~IdlVIn~~ 68 (95)
T PF02142_consen 2 IVPLAKRLAEL---GFEIYA-TE------GTAKFLKEHGIEVTEVVNKIGEGESPDGRV---QIMDLIKNGKIDLVINTP 68 (95)
T ss_dssp HHHHHHHHHHT---TSEEEE-EH------HHHHHHHHTT--EEECCEEHSTG-GGTHCH---HHHHHHHTTSEEEEEEE-
T ss_pred HHHHHHHHHHC---CCEEEE-Ch------HHHHHHHHcCCCceeeeeecccCccCCchh---HHHHHHHcCCeEEEEEeC
Confidence 67889999875 477775 22 334555578987322222 111 122221 677888989999888744
Q ss_pred cccCCC---cCcHHHHHHHHcCCCccc
Q psy9408 87 QSIDSD---NNQTGQMLAALLNWPQAT 110 (219)
Q Consensus 87 ~s~d~~---~~~v~~~lA~~Lg~p~vt 110 (219)
...... .+..--++|...++|++|
T Consensus 69 ~~~~~~~~~dg~~irr~a~~~~Ip~~T 95 (95)
T PF02142_consen 69 YPFSDQEHTDGYKIRRAAVEYNIPLFT 95 (95)
T ss_dssp -THHHHHTHHHHHHHHHHHHTTSHEEC
T ss_pred CCCcccccCCcHHHHHHHHHcCCCCcC
Confidence 332211 244557889999999876
No 375
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=30.70 E-value=1.5e+02 Score=30.82 Aligned_cols=65 Identities=23% Similarity=0.241 Sum_probs=35.4
Q ss_pred HhhHHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy9408 5 PFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVIL 84 (219)
Q Consensus 5 p~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~ 84 (219)
++|.+++..++.+++. |.+++.+-..|..... -. .-+|+.|.- + .+...+.++++++++|.|++
T Consensus 572 efd~~~v~~i~al~~~---G~~vI~v~~npetvs~----d~-~~~D~ly~e-------p-~~~e~vl~i~~~e~idgVI~ 635 (1050)
T TIGR01369 572 EFDYCCVHAVLALREL---GYETIMINYNPETVST----DY-DTSDRLYFE-------P-LTFEDVMNIIELEKPEGVIV 635 (1050)
T ss_pred ccchHHHHHHHHHHhC---CCEEEEEecCCccccc----cc-cccceEEEe-------c-CCHHHHHHHHhhcCCCEEEE
Confidence 4677777777777664 3666666555432100 00 013444431 1 12456667777888888874
Q ss_pred c
Q psy9408 85 G 85 (219)
Q Consensus 85 G 85 (219)
+
T Consensus 636 ~ 636 (1050)
T TIGR01369 636 Q 636 (1050)
T ss_pred c
Confidence 4
No 376
>PRK07478 short chain dehydrogenase; Provisional
Probab=30.70 E-value=3e+02 Score=22.48 Aligned_cols=72 Identities=10% Similarity=0.097 Sum_probs=43.2
Q ss_pred HHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhc-CCCEEEEccc
Q psy9408 11 IESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKE-NPQLVILGKQ 87 (219)
Q Consensus 11 le~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~-~~dlVl~G~~ 87 (219)
.+.|.+|++. |.+|+.+.-.++..++...+....|.+ +..+..| -.+++.+...+.++.++. .+|.++....
T Consensus 20 ~~ia~~l~~~---G~~v~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~D-~~~~~~~~~~~~~~~~~~~~id~li~~ag 92 (254)
T PRK07478 20 RAAAKLFARE---GAKVVVGARRQAELDQLVAEIRAEGGE-AVALAGD-VRDEAYAKALVALAVERFGGLDIAFNNAG 92 (254)
T ss_pred HHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHhcCCc-EEEEEcC-CCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 4556677764 467766654444344444555555654 4344323 457777888888877765 4788876553
No 377
>PRK00536 speE spermidine synthase; Provisional
Probab=30.69 E-value=1.9e+02 Score=25.00 Aligned_cols=30 Identities=7% Similarity=0.083 Sum_probs=23.7
Q ss_pred EEEEecCcchHHHHHHHHhCCCCEEEEEecCC
Q psy9408 28 IAISCGNKKCKEILQIAMAMGVDRAILIETDT 59 (219)
Q Consensus 28 ~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~ 59 (219)
-++.+|+++ -.++|+.+.+- +++..++-|.
T Consensus 75 ~VLIiGGGD-Gg~~REvLkh~-~~v~mVeID~ 104 (262)
T PRK00536 75 EVLIVDGFD-LELAHQLFKYD-THVDFVQADE 104 (262)
T ss_pred eEEEEcCCc-hHHHHHHHCcC-CeeEEEECCH
Confidence 567888775 57899999996 5999998654
No 378
>PRK00076 recR recombination protein RecR; Reviewed
Probab=30.60 E-value=3.2e+02 Score=22.73 Aligned_cols=69 Identities=20% Similarity=0.229 Sum_probs=47.2
Q ss_pred CCCHhhHHHHHHHHHhhhhcCCCcEEEEE--------EecCc--chHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHH
Q psy9408 2 SINPFDEIAIESAIRLRESSNKIKEIIAI--------SCGNK--KCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQ 71 (219)
Q Consensus 2 ~iNp~D~~Ale~A~~l~e~~g~g~~V~av--------~~G~~--~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la 71 (219)
|=||.|..++|..-..+- .-.++ -+||+ ..+..++.. ..++.++|+..++ ..+.++||.-|+
T Consensus 84 VE~~~Dv~aiE~s~~y~G------~YhVL~G~ispl~gi~p~~l~i~~L~~ri-~~~v~EVIlA~~p-t~EGe~Ta~yi~ 155 (196)
T PRK00076 84 VESPADVLAIERTGEYRG------LYHVLGGLLSPLDGIGPEDLNIDELLERL-DGEVKEVILATNP-TVEGEATAHYIA 155 (196)
T ss_pred ECCHHHHHHHHhhCcCce------EEEEecCCcCCCCCCCccccCHHHHHHHH-hCCCCEEEEeCCC-CchHHHHHHHHH
Confidence 347899999998755542 22222 13333 244556666 6679999998854 678899999999
Q ss_pred HHHHhcC
Q psy9408 72 VIVKKEN 78 (219)
Q Consensus 72 ~~ik~~~ 78 (219)
+.++..+
T Consensus 156 ~~lk~~~ 162 (196)
T PRK00076 156 RLLKPLG 162 (196)
T ss_pred HHHHHcC
Confidence 9998643
No 379
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=30.58 E-value=1.1e+02 Score=26.12 Aligned_cols=53 Identities=9% Similarity=-0.135 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccce
Q psy9408 58 DTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFA 112 (219)
Q Consensus 58 ~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v 112 (219)
|...++....++..+++++.+++.|+-+..|. .+..++..+++..++|+++..
T Consensus 47 D~~~~p~~a~~~a~~li~~~~v~~viG~~~s~--~~~a~~~~~~~~~~vp~i~~~ 99 (312)
T cd06346 47 DTQTDPAAGVAAATKLVNVDGVPGIVGAACSG--VTIAALTSVAVPNGVVMISPS 99 (312)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCEEEccccch--hhHhhhhhhhccCCcEEEecC
Confidence 44678998889999999888899888554442 122232468888899998644
No 380
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=30.51 E-value=85 Score=27.26 Aligned_cols=52 Identities=17% Similarity=0.089 Sum_probs=36.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccce
Q psy9408 58 DTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFA 112 (219)
Q Consensus 58 ~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v 112 (219)
|...++....+...+++.+.+++.|+-+..|. .......++...++|+++..
T Consensus 46 D~~~~~~~a~~~a~~l~~~~~v~~viG~~~s~---~~~a~~~~~~~~~ip~i~~~ 97 (350)
T cd06366 46 DSKCDPVQAASAALDLLENKPVVAIIGPQCSS---VAEFVAEVANEWNVPVLSFA 97 (350)
T ss_pred CCCCCHHHHHHHHHHHhccCCceEEECCCcHH---HHHHHHHHhhcCCeeEEecc
Confidence 44678888888888888877888877554432 23334568889999988754
No 381
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=30.46 E-value=2.9e+02 Score=24.47 Aligned_cols=72 Identities=10% Similarity=0.081 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecC-CCCCHHHHHHHHHHHHHhcC-CCEE
Q psy9408 6 FDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETD-TILQSLSVAKLLQVIVKKEN-PQLV 82 (219)
Q Consensus 6 ~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~-~~~d~~~~A~~la~~ik~~~-~dlV 82 (219)
.|.+.|.+.. +.. ...|+-+..|+-..-+.++.++..|+|-+++.+.= ...||...++.+.+++++++ |+++
T Consensus 190 ~~~elL~ei~---~~~--~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~~~~~~~~ 263 (293)
T PRK04180 190 APYELVKEVA---ELG--RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTHYDDPEVL 263 (293)
T ss_pred CCHHHHHHHH---HhC--CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 3445555543 332 24555568887645677888999999999987631 13589999999999998864 5433
No 382
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=30.42 E-value=3.1e+02 Score=22.62 Aligned_cols=113 Identities=14% Similarity=0.143 Sum_probs=60.5
Q ss_pred CCCCHhhHHHHHHHHHhhhhcCCCcEEEEEEecCcch--HHHHHH----HHhC--CC-----------------------
Q psy9408 1 MSINPFDEIAIESAIRLRESSNKIKEIIAISCGNKKC--KEILQI----AMAM--GV----------------------- 49 (219)
Q Consensus 1 ~~iNp~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~--~~~lr~----~~a~--Ga----------------------- 49 (219)
|+.++..+.|+..+.++++..+..... .+..|+.+. ...+.. +... |.
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~~~~~~~-l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~ 88 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENPGERYNP-LFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEI 88 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHSTTTSSSE-EEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSH
T ss_pred CCcCCcHHHHHHHHHHHHhcCCCCCCc-eEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccc
Confidence 678899999999999999864311112 356777532 112221 1111 11
Q ss_pred ---------CEEEEEecCC-CCCHHHHHHHHHHHHHh---cCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccceeEE
Q psy9408 50 ---------DRAILIETDT-ILQSLSVAKLLQVIVKK---ENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKI 115 (219)
Q Consensus 50 ---------D~v~~v~~~~-~~d~~~~A~~la~~ik~---~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l 115 (219)
-.+++++|=. -.+...+-..+-.++.. .+--+|+++....+.- ..+.++|..||.|+.+..+...
T Consensus 89 ~~~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l-~~~~~~L~SRl~~Gl~~~l~~p 166 (219)
T PF00308_consen 89 EEFKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL-SGLLPDLRSRLSWGLVVELQPP 166 (219)
T ss_dssp HHHHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT-TTS-HHHHHHHHCSEEEEE---
T ss_pred hhhhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc-cccChhhhhhHhhcchhhcCCC
Confidence 1233444322 12233344555554433 3557899998887643 4578999999999988555433
No 383
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=30.37 E-value=2.1e+02 Score=25.60 Aligned_cols=84 Identities=13% Similarity=0.143 Sum_probs=53.0
Q ss_pred cEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCC----------CCCHH------HHHHHHHHHHHhc-----------
Q psy9408 25 KEIIAISCGNKKCKEILQIAMAMGVDRAILIETDT----------ILQSL------SVAKLLQVIVKKE----------- 77 (219)
Q Consensus 25 ~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~----------~~d~~------~~A~~la~~ik~~----------- 77 (219)
.+|..+-+|+-. -..+..+...|+-++.++++|. .++.. .-+.++++.+++.
T Consensus 25 ~~VlVvG~GglG-s~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~~ 103 (339)
T PRK07688 25 KHVLIIGAGALG-TANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIVQ 103 (339)
T ss_pred CcEEEECCCHHH-HHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEec
Confidence 467777777544 4677888899999999999763 12222 1223333333322
Q ss_pred ------------CCCEEEEcccccCCCcCcHHHHHHHHcCCCcccc
Q psy9408 78 ------------NPQLVILGKQSIDSDNNQTGQMLAALLNWPQATF 111 (219)
Q Consensus 78 ------------~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~ 111 (219)
++|+|+...... .++.+--..+..++.|++..
T Consensus 104 ~~~~~~~~~~~~~~DlVid~~Dn~--~~r~~ln~~~~~~~iP~i~~ 147 (339)
T PRK07688 104 DVTAEELEELVTGVDLIIDATDNF--ETRFIVNDAAQKYGIPWIYG 147 (339)
T ss_pred cCCHHHHHHHHcCCCEEEEcCCCH--HHHHHHHHHHHHhCCCEEEE
Confidence 457777664432 34566677788999998853
No 384
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=30.30 E-value=3e+02 Score=25.09 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=15.0
Q ss_pred HHHHHHHHhcCCCEEEEcc
Q psy9408 68 KLLQVIVKKENPQLVILGK 86 (219)
Q Consensus 68 ~~la~~ik~~~~dlVl~G~ 86 (219)
..|.+++++.++|+|+.|.
T Consensus 64 ~~l~~~~~~~~id~I~p~~ 82 (450)
T PRK06111 64 EKIIEIAKKTGAEAIHPGY 82 (450)
T ss_pred HHHHHHHHHhCCCEEEeCC
Confidence 4567788888999999874
No 385
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=30.21 E-value=3.5e+02 Score=23.77 Aligned_cols=130 Identities=18% Similarity=0.182 Sum_probs=64.8
Q ss_pred cEEEEEEecCcchHHHHHH-HHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhc-CCCEEE-EcccccCCCcCcHHHHHH
Q psy9408 25 KEIIAISCGNKKCKEILQI-AMAMGVDRAILIETDTILQSLSVAKLLQVIVKKE-NPQLVI-LGKQSIDSDNNQTGQMLA 101 (219)
Q Consensus 25 ~~V~av~~G~~~~~~~lr~-~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~-~~dlVl-~G~~s~d~~~~~v~~~lA 101 (219)
.++..|+ |+. ..+.+++ +...|...+..+..... .....+.+.+++. ++|.|+ +|.-+. .+++-.+|
T Consensus 26 ~r~livt-d~~-~~~~~~~~L~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~d~iIaiGGGsv----~D~aK~vA 95 (331)
T cd08174 26 GRVAVVS-GPG-VGEQVAESLKTSFSAEVEAVEEVSN----SDAEEIGARARSIPNVDAVVGIGGGKV----IDVAKYAA 95 (331)
T ss_pred CceEEEE-CCc-HHHHHHHHHHhccCceEEEecCCCc----cCHHHHHHHHHhccCCCEEEEeCCcHH----HHHHHHHH
Confidence 4555554 543 3333444 43456533333331112 2223334444444 589887 665443 45888999
Q ss_pred HHcCCCcccceeEEEEe-eCCeEEEEEEcCCeEEEEEEcCCEEEEEecCCCC--CCCCCHHHHHHHc
Q psy9408 102 ALLNWPQATFASKIVLK-KNNKILVTQEIEDGKETILLSLPAIITTDLRMNE--PRYVTLMNIIKAR 165 (219)
Q Consensus 102 ~~Lg~p~vt~v~~l~~~-~~~~~~~~R~~~gG~~~~~~~~P~vvtv~~~~~~--pr~p~l~~~~~A~ 165 (219)
.+.++|+++--|...-. ....+.+.-. .+|+...-...|..+-+.+.... |+.-...+++.+-
T Consensus 96 ~~~~~p~i~vPTt~~tgs~~s~~a~i~~-~~~k~~~~~~~P~~vi~D~~~l~tlP~~~~~aG~~Dal 161 (331)
T cd08174 96 FLRGIPLSVPTTNLNDDGIASPVAVLTD-EGGKRSSLAAIPIGVVIDLDVIRSAPRRLILAGIGDLI 161 (331)
T ss_pred hhcCCCEEEecCccccCccccCceEEEe-CCCeeeecCCCCcEEEEcHHHHHhCCHHHHHhhHHHHH
Confidence 99999988766655321 1223332222 23443221126766666664332 5444455565555
No 386
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=30.15 E-value=2.8e+02 Score=26.63 Aligned_cols=58 Identities=17% Similarity=0.253 Sum_probs=31.2
Q ss_pred chHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcC
Q psy9408 36 KCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLN 105 (219)
Q Consensus 36 ~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg 105 (219)
++++.++..-+.+++++|++.++ .+....|+..+++. +-+++++...+ ++..+|+++.
T Consensus 348 S~~dll~ai~~~~a~~V~iLPNn--~nii~aA~qa~~~~---~~~v~vvpT~s-------~~qgiaAl~~ 405 (530)
T TIGR03599 348 STEDILKAIEKVNAKNVFVLPNN--KNIILAAEQAAELA---DKNVVVIPTKT-------IVQGLAALLV 405 (530)
T ss_pred CHHHHHHHHHhCCCCeEEEecCC--ccHHHHHHHHHHHh---CCcEEEEeCCC-------HHHHHHHHHh
Confidence 34555555566666666666542 34444444444432 45666665554 5555555544
No 387
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=30.12 E-value=3.8e+02 Score=24.57 Aligned_cols=29 Identities=21% Similarity=0.106 Sum_probs=22.0
Q ss_pred HHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 72 VIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 72 ~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
+.+++.+||+++.+. =+..+|.+||+|++
T Consensus 344 ~~~~~~~pDl~Ig~s---------~~~~~a~~~giP~~ 372 (416)
T cd01980 344 AAVEEYRPDLAIGTT---------PLVQYAKEKGIPAL 372 (416)
T ss_pred HHHhhcCCCEEEeCC---------hhhHHHHHhCCCEE
Confidence 345677999999542 35678999999986
No 388
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=30.09 E-value=1.6e+02 Score=26.85 Aligned_cols=94 Identities=17% Similarity=0.064 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHhhhhcCCCcEEEEE-EecCcchHHHHHHHHhCCCCEEEEEecCC--CCCHHHHHHHHH-----------
Q psy9408 6 FDEIAIESAIRLRESSNKIKEIIAI-SCGNKKCKEILQIAMAMGVDRAILIETDT--ILQSLSVAKLLQ----------- 71 (219)
Q Consensus 6 ~D~~Ale~A~~l~e~~g~g~~V~av-~~G~~~~~~~lr~~~a~GaD~v~~v~~~~--~~d~~~~A~~la----------- 71 (219)
-|..|+..|.+|++.. +|.+|.|+ .+|.+..-+ -+..-..| ....+.... .+.....-..+.
T Consensus 9 ed~~a~ai~~~l~~~~-~~~~v~~~p~vG~~~~~e-~~~ip~~g--~~~~~~sgg~~~~~~~~~~~~~~~gl~~~~~~~~ 84 (396)
T TIGR03492 9 EDLIAARIAKALLQLS-PDLNLEALPLVGEGRAYQ-NLGIPIIG--PTKELPSGGFSYQSLRGLLRDLRAGLVGLTLGQW 84 (396)
T ss_pred HHHHHHHHHHHHHhhC-CCCCeEEeCcccCCHHHh-hCCCceeC--CCCCCCCCCccCCCHHHHHHHHHhhHHHHHHHHH
Confidence 4888999999998754 24566655 566543211 11111233 233333221 122222221111
Q ss_pred HHHHhc--CCCEEEEcccccCCCcCcHHHHHHHHcCCCccc
Q psy9408 72 VIVKKE--NPQLVILGKQSIDSDNNQTGQMLAALLNWPQAT 110 (219)
Q Consensus 72 ~~ik~~--~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt 110 (219)
.++++. +||+|+. -|+-++...|..+|.|++-
T Consensus 85 ~~~~~~~~~p~~v~~-------~Gg~v~~~aA~~~~~p~~~ 118 (396)
T TIGR03492 85 RALRKWAKKGDLIVA-------VGDIVPLLFAWLSGKPYAF 118 (396)
T ss_pred HHHHHHhhcCCEEEE-------ECcHHHHHHHHHcCCCceE
Confidence 245666 8999984 2345788888889999876
No 389
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=29.96 E-value=29 Score=25.21 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=21.1
Q ss_pred EEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 81 LVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 81 lVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
++++|...+|++ .++-+||+++|++++
T Consensus 2 I~I~G~~gsGKS--T~a~~La~~~~~~~i 28 (121)
T PF13207_consen 2 IIISGPPGSGKS--TLAKELAERLGFPVI 28 (121)
T ss_dssp EEEEESTTSSHH--HHHHHHHHHHTCEEE
T ss_pred EEEECCCCCCHH--HHHHHHHHHHCCeEE
Confidence 567787777654 599999999998864
No 390
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=29.73 E-value=1.1e+02 Score=27.88 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEE
Q psy9408 8 EIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAIL 54 (219)
Q Consensus 8 ~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~ 54 (219)
+++|..+.+.-.+.|.-.+|..+.-|+-......-+++++|||.++.
T Consensus 256 ~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~i 302 (368)
T PF01645_consen 256 EYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALGADAVYI 302 (368)
T ss_dssp HHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-
T ss_pred HHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEe
Confidence 45666666665555433468888888766666677899999998876
No 391
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=29.67 E-value=1.5e+02 Score=24.28 Aligned_cols=91 Identities=20% Similarity=0.176 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhhhcCCCcEEEEEEecCc-----chHHHHHHHHhCCC-------CEEEEEecCC-CCCH---HHHHHHHH
Q psy9408 8 EIAIESAIRLRESSNKIKEIIAISCGNK-----KCKEILQIAMAMGV-------DRAILIETDT-ILQS---LSVAKLLQ 71 (219)
Q Consensus 8 ~~Ale~A~~l~e~~g~g~~V~av~~G~~-----~~~~~lr~~~a~Ga-------D~v~~v~~~~-~~d~---~~~A~~la 71 (219)
+..++.|++|++. | ++.|.- -+.+.+..++..+- ..-++++-.. ..++ ..+++.++
T Consensus 5 ~~l~~~a~~l~~~-~-------~~~~~ia~el~vs~~t~~~l~~~~~~~~~~~~~~~~yid~~~~~~~~~~l~~i~~~la 76 (200)
T PRK02277 5 EELIEKAAELKNK-G-------LSTGEIADELNVSRETATWLLTRAKKLEKAPAPKDIHIDWSSIGSSSSRLRYIASAMA 76 (200)
T ss_pred HHHHHHHHHHHHc-C-------CChhhhhhhhcchHHHHHHHHhcccCCCCCCCCCCEEEEChhhccCHHHHHHHHHHHH
Confidence 4678999999985 3 112211 02344555554432 2244444322 3455 46777777
Q ss_pred HHHHh--cCCCEEEEcccccCCCcCcHHHHHHHHcCCCccc
Q psy9408 72 VIVKK--ENPQLVILGKQSIDSDNNQTGQMLAALLNWPQAT 110 (219)
Q Consensus 72 ~~ik~--~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt 110 (219)
+.+.. .++|+|+.-.. .+-.++..+|..||.|+..
T Consensus 77 ~~i~~~~~~~D~Ivgi~~----gG~~~A~~lA~~L~~~~~~ 113 (200)
T PRK02277 77 DMLEKEDEEVDVVVGIAK----SGVPLATLVADELGKDLAI 113 (200)
T ss_pred HHHHhcCCCCCEEEeecc----CCHHHHHHHHHHhCCCcEE
Confidence 77743 46898875333 4567999999999999753
No 392
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=29.55 E-value=3.6e+02 Score=23.08 Aligned_cols=52 Identities=17% Similarity=0.033 Sum_probs=37.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCccccee
Q psy9408 58 DTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFAS 113 (219)
Q Consensus 58 ~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~ 113 (219)
|...++....+++.+++.+.+.+.|+.+.++.. .... .++...++|+++...
T Consensus 47 D~~~~~~~~~~~~~~li~~~~V~~iig~~~s~~---~~~~-~~~~~~~ip~v~~~~ 98 (341)
T cd06341 47 DDQGDPASAAACARDLVEDDKVVAVVGGSSGAG---GSAL-PYLAGAGIPVIGGAG 98 (341)
T ss_pred cCCCChhHHHHHHHHHHHhcCceEEEecccccc---hhHH-HHHhhcCCceecCCC
Confidence 335688877888888888778999988876532 2233 566788999887553
No 393
>TIGR00534 OpcA opcA protein. The opcA gene is found immediately downstream of zwf, the glucose-6-phosphate dehydrogenase (G6PDH) gene, in a number of species, including Mycobacterium tuberculosis, Streptomyces coelicolor, Nostoc punctiforme, and Synechococcus sp. PCC 7942. In the latter, disruption of opcA was shown to block assembly of G6PDH into active oligomeric forms.
Probab=29.42 E-value=1.8e+02 Score=25.90 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=19.0
Q ss_pred CEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 80 QLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 80 dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
.+.+.|....- ...-+++-||.+||||+.
T Consensus 200 ~v~V~g~~~~P-s~~LLagWLa~RLg~~v~ 228 (311)
T TIGR00534 200 SAVVDYEKGNP-AQALLAGWLASRLGWQYR 228 (311)
T ss_pred EEEEEeCCCCH-HHHHHHHHHHHhcCCeeE
Confidence 35555554321 234578999999999964
No 394
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=29.40 E-value=4.1e+02 Score=23.70 Aligned_cols=76 Identities=14% Similarity=-0.009 Sum_probs=46.0
Q ss_pred hHHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcc
Q psy9408 7 DEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGK 86 (219)
Q Consensus 7 D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~ 86 (219)
|++.++..++. .. ..++.++..-+....+.++.+...|+|.+-+....... ..+....+.+|+.++++.++-.
T Consensus 63 ~~e~i~~~~~~---~~-~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~e~---d~~~~~i~~ak~~G~~v~~~l~ 135 (333)
T TIGR03217 63 DLEYIEAAADV---VK-RAKVAVLLLPGIGTVHDLKAAYDAGARTVRVATHCTEA---DVSEQHIGMARELGMDTVGFLM 135 (333)
T ss_pred hHHHHHHHHHh---CC-CCEEEEEeccCccCHHHHHHHHHCCCCEEEEEeccchH---HHHHHHHHHHHHcCCeEEEEEE
Confidence 45555554433 21 35777666432223466899999999976655432222 2355666777888888877666
Q ss_pred ccc
Q psy9408 87 QSI 89 (219)
Q Consensus 87 ~s~ 89 (219)
.+.
T Consensus 136 ~s~ 138 (333)
T TIGR03217 136 MSH 138 (333)
T ss_pred ccc
Confidence 553
No 395
>PRK07102 short chain dehydrogenase; Provisional
Probab=29.35 E-value=3.1e+02 Score=22.21 Aligned_cols=71 Identities=20% Similarity=0.177 Sum_probs=41.2
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcc
Q psy9408 10 AIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGK 86 (219)
Q Consensus 10 Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~ 86 (219)
....+.+|.++ |.+|+++.-.+...++........+-.++..+..| -.|...+.+.+.++.+ ++|+++...
T Consensus 14 G~~~a~~l~~~---G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D-l~~~~~~~~~~~~~~~--~~d~vv~~a 84 (243)
T PRK07102 14 ARACARRYAAA---GARLYLAARDVERLERLADDLRARGAVAVSTHELD-ILDTASHAAFLDSLPA--LPDIVLIAV 84 (243)
T ss_pred HHHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecC-CCChHHHHHHHHHHhh--cCCEEEECC
Confidence 34567777765 46888777665444444444444445566666543 3455556566555543 468888643
No 396
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=29.34 E-value=1.9e+02 Score=26.21 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHhhhhcC-CCcEE-EEEEecCcc--------hHHHHHHHH-hCCCCEEEEEecC
Q psy9408 6 FDEIAIESAIRLRESSN-KIKEI-IAISCGNKK--------CKEILQIAM-AMGVDRAILIETD 58 (219)
Q Consensus 6 ~D~~Ale~A~~l~e~~g-~g~~V-~av~~G~~~--------~~~~lr~~~-a~GaD~v~~v~~~ 58 (219)
.|.|++=+|.++-+++- .|.+| +|+.-|.++ ..+.+.+.+ .+++|.+|+++|.
T Consensus 45 SD~N~if~avkiydeL~~~GedveVA~VsG~~~~~v~ad~~I~~qld~vl~~~~~~~~i~VsDG 108 (344)
T PF04123_consen 45 SDVNAIFGAVKIYDELKAEGEDVEVAVVSGSPDVGVEADRKIAEQLDEVLSKFDPDSAIVVSDG 108 (344)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCchhhHHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 46777777777766541 12344 344445443 122344444 4778888888863
No 397
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=29.32 E-value=76 Score=27.36 Aligned_cols=94 Identities=15% Similarity=0.099 Sum_probs=50.0
Q ss_pred hHHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCC----CC--CHHHHHHHHHHHHHhcCCC
Q psy9408 7 DEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDT----IL--QSLSVAKLLQVIVKKENPQ 80 (219)
Q Consensus 7 D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~----~~--d~~~~A~~la~~ik~~~~d 80 (219)
...+.+.|..|.++ |.+|+.++.+++.. . .. ...|. ..+.+.-.. .. -.......+.+.+++.+||
T Consensus 15 ~~~~~~la~~L~~~---G~~v~v~~~~~~~~-~--~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~d 86 (371)
T cd04962 15 GVVATELGKALARR---GHEVHFITSSRPFR-L--DE-YSPNI-FFHEVEVPQYPLFQYPPYDLALASKIAEVAKRYKLD 86 (371)
T ss_pred cchHHHHHHHHHhc---CCceEEEecCCCcc-h--hh-hccCe-EEEEecccccchhhcchhHHHHHHHHHHHHhcCCcc
Confidence 34677888888875 47898888764321 1 11 11111 111111110 01 1123457778888889999
Q ss_pred EEEEcccccCCCcCcHHHHHHHHc----CCCcccce
Q psy9408 81 LVILGKQSIDSDNNQTGQMLAALL----NWPQATFA 112 (219)
Q Consensus 81 lVl~G~~s~d~~~~~v~~~lA~~L----g~p~vt~v 112 (219)
+|.+-. +.. ..++..++.++ ++|.+...
T Consensus 87 ivh~~~-~~~---~~~~~~~~~~~~~~~~~~~i~~~ 118 (371)
T cd04962 87 LLHVHY-AVP---HAVAAYLAREILGKKDLPVVTTL 118 (371)
T ss_pred EEeecc-cCC---ccHHHHHHHHhcCcCCCcEEEEE
Confidence 998743 221 23555566543 67776543
No 398
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=29.18 E-value=32 Score=28.08 Aligned_cols=18 Identities=17% Similarity=0.167 Sum_probs=12.5
Q ss_pred cCcHHHHHHHHcCCCccc
Q psy9408 93 NNQTGQMLAALLNWPQAT 110 (219)
Q Consensus 93 ~~~v~~~lA~~Lg~p~vt 110 (219)
+-.|+.+||++||+++++
T Consensus 13 ~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 13 KTTVARELAEHLGLKLVS 30 (179)
T ss_pred hhHHHHHHHHHhCCceee
Confidence 345777777777777775
No 399
>PRK12999 pyruvate carboxylase; Reviewed
Probab=29.16 E-value=5.7e+02 Score=27.14 Aligned_cols=79 Identities=11% Similarity=0.140 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhhhcCCCcEEEEEEecC---c-----c---hHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHh
Q psy9408 8 EIAIESAIRLRESSNKIKEIIAISCGN---K-----K---CKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKK 76 (219)
Q Consensus 8 ~~Ale~A~~l~e~~g~g~~V~av~~G~---~-----~---~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~ 76 (219)
...++.+.+...+.|...++..-..|. + . ..+.++++.++|+|.+.+-+.-....|..+...+..+-++
T Consensus 653 ~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~ 732 (1146)
T PRK12999 653 VENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAGAHILAIKDMAGLLKPAAAYELVSALKEE 732 (1146)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCCCHHHHHHHHHHHHHH
Confidence 455777777776654222333333321 0 1 1356788999999977765543457888888877777665
Q ss_pred cCCCEEEEcc
Q psy9408 77 ENPQLVILGK 86 (219)
Q Consensus 77 ~~~dlVl~G~ 86 (219)
.+..+=+=++
T Consensus 733 ~~ipi~~H~H 742 (1146)
T PRK12999 733 VDLPIHLHTH 742 (1146)
T ss_pred cCCeEEEEeC
Confidence 5433434333
No 400
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=29.16 E-value=94 Score=30.54 Aligned_cols=53 Identities=9% Similarity=0.134 Sum_probs=31.8
Q ss_pred hHHHHHHHHhCCCCEEEEEecCC-CCCH-HHHHHHHHHHHHh-cCCCEEEEccccc
Q psy9408 37 CKEILQIAMAMGVDRAILIETDT-ILQS-LSVAKLLQVIVKK-ENPQLVILGKQSI 89 (219)
Q Consensus 37 ~~~~lr~~~a~GaD~v~~v~~~~-~~d~-~~~A~~la~~ik~-~~~dlVl~G~~s~ 89 (219)
++..+.++-+.|+|-+|++.+.. ..++ ...+.-.+..+.+ .+.|+||.|++-.
T Consensus 207 a~~~v~~Lk~~gaDvII~LsH~G~~~d~~~~~aen~~~~l~~v~gID~Il~GHsH~ 262 (649)
T PRK09420 207 ARKYVPEMKEKGADIVVAIPHSGISADPYKAMAENSVYYLSEVPGIDAIMFGHSHA 262 (649)
T ss_pred HHHHHHHHHHcCCCEEEEEecCCcCCCCccccccchhHHHhcCCCCCEEEeCCCCc
Confidence 34556666678999999999753 1121 1122222222333 3799999999754
No 401
>PRK13670 hypothetical protein; Provisional
Probab=29.11 E-value=1.8e+02 Score=26.70 Aligned_cols=77 Identities=17% Similarity=0.167 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhhhcCCCcEEEEEEecC----c-----chHHHHHHHHhCCCCEEEEEecCC-CCCHHHHHHHHHHHHHhc
Q psy9408 8 EIAIESAIRLRESSNKIKEIIAISCGN----K-----KCKEILQIAMAMGVDRAILIETDT-ILQSLSVAKLLQVIVKKE 77 (219)
Q Consensus 8 ~~Ale~A~~l~e~~g~g~~V~av~~G~----~-----~~~~~lr~~~a~GaD~v~~v~~~~-~~d~~~~A~~la~~ik~~ 77 (219)
.+.|+.+++++.. + ..+.++ -|. + +-.+-.+.+..+|+|-++.+.-.- ...++..++.--+++++.
T Consensus 18 ~~~i~~a~~~a~~-~--~~~~Vm-p~~f~qrg~p~i~~~~~R~~~a~~~GvD~vielpf~~a~~sae~F~~~aV~iL~~l 93 (388)
T PRK13670 18 LYHLNQAKKLTNA-D--VTIAVM-SGNFVQRGEPAIVDKWTRAKMALENGVDLVVELPFLYSVQSADFFAEGAVSILDAL 93 (388)
T ss_pred HHHHHHHHHHHhC-C--CcEEEe-cHHHhCCCCCCCCCHHHHHHHHHHcCCCEEEEeCCchHhCCHHHHHHhHHHHHHHc
Confidence 4678888888764 2 334433 121 0 123446778999999999988542 346776776433345667
Q ss_pred CCCEEEEcccc
Q psy9408 78 NPQLVILGKQS 88 (219)
Q Consensus 78 ~~dlVl~G~~s 88 (219)
+.+.|++|..+
T Consensus 94 ~v~~lv~G~e~ 104 (388)
T PRK13670 94 GVDSLVFGSES 104 (388)
T ss_pred CCCEEEEcCCC
Confidence 89999999984
No 402
>PRK00131 aroK shikimate kinase; Reviewed
Probab=29.06 E-value=45 Score=25.64 Aligned_cols=30 Identities=23% Similarity=0.468 Sum_probs=23.4
Q ss_pred CCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 78 NPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 78 ~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
+.-++|+|...+|+ ..++-.||.+||++++
T Consensus 4 ~~~i~l~G~~GsGK--stla~~La~~l~~~~~ 33 (175)
T PRK00131 4 GPNIVLIGFMGAGK--STIGRLLAKRLGYDFI 33 (175)
T ss_pred CCeEEEEcCCCCCH--HHHHHHHHHHhCCCEE
Confidence 34678888877765 4688899999999877
No 403
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=29.02 E-value=2.8e+02 Score=22.16 Aligned_cols=42 Identities=14% Similarity=0.077 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHHHhcCCC--EEEEcccccCCCcCcHHHHHHHHcCC
Q psy9408 61 LQSLSVAKLLQVIVKKENPQ--LVILGKQSIDSDNNQTGQMLAALLNW 106 (219)
Q Consensus 61 ~d~~~~A~~la~~ik~~~~d--lVl~G~~s~d~~~~~v~~~lA~~Lg~ 106 (219)
.+-+..|...++.|++.+++ ++|+|.+. ||-++-.+|.+|.-
T Consensus 46 ~si~~la~~y~~~I~~~~~~gp~~L~G~S~----Gg~lA~E~A~~Le~ 89 (229)
T PF00975_consen 46 DSIEELASRYAEAIRARQPEGPYVLAGWSF----GGILAFEMARQLEE 89 (229)
T ss_dssp SSHHHHHHHHHHHHHHHTSSSSEEEEEETH----HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhhhCCCCCeeehccCc----cHHHHHHHHHHHHH
Confidence 36777888888888877665 99999986 56788888888843
No 404
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=28.97 E-value=71 Score=25.14 Aligned_cols=50 Identities=24% Similarity=0.208 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcH-HHHH--HHHc-CCCcccceeEEE
Q psy9408 63 SLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQT-GQML--AALL-NWPQATFASKIV 116 (219)
Q Consensus 63 ~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v-~~~l--A~~L-g~p~vt~v~~l~ 116 (219)
.....+.|.+++++.+||+|+|=.-.. .++ ...+ -..+ +.|+++-+++..
T Consensus 74 ~~~~~~~l~~~l~~~~PD~IIsThp~~----~~~~l~~lk~~~~~~~~p~~tvvTD~~ 127 (169)
T PF06925_consen 74 SRLFARRLIRLLREFQPDLIISTHPFP----AQVPLSRLKRRGRLPNIPVVTVVTDFD 127 (169)
T ss_pred HHHHHHHHHHHHhhcCCCEEEECCcch----hhhHHHHHHHhhcccCCcEEEEEcCCC
Confidence 345566788888899999999877642 223 2212 2335 578888888764
No 405
>PRK05867 short chain dehydrogenase; Provisional
Probab=28.96 E-value=3.2e+02 Score=22.31 Aligned_cols=72 Identities=10% Similarity=0.098 Sum_probs=41.2
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhc-CCCEEEEcc
Q psy9408 10 AIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKE-NPQLVILGK 86 (219)
Q Consensus 10 Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~-~~dlVl~G~ 86 (219)
..+.|.+|.+. |.+|+.+.-.....++...++-..|. ++..+..| -.|.......+.++.++. ..|+++.-.
T Consensus 22 G~~ia~~l~~~---G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D-~~~~~~~~~~~~~~~~~~g~id~lv~~a 94 (253)
T PRK05867 22 GKRVALAYVEA---GAQVAIAARHLDALEKLADEIGTSGG-KVVPVCCD-VSQHQQVTSMLDQVTAELGGIDIAVCNA 94 (253)
T ss_pred HHHHHHHHHHC---CCEEEEEcCCHHHHHHHHHHHHhcCC-eEEEEEcc-CCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 34566777764 46776654433333333344444553 44444433 457777777777777665 578888654
No 406
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=28.92 E-value=1.9e+02 Score=24.65 Aligned_cols=90 Identities=10% Similarity=0.185 Sum_probs=38.8
Q ss_pred EEEEEEecCcchHH---HHHHHHhCCCCEEEEEecCCCCCH---HHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHH
Q psy9408 26 EIIAISCGNKKCKE---ILQIAMAMGVDRAILIETDTILQS---LSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQM 99 (219)
Q Consensus 26 ~V~av~~G~~~~~~---~lr~~~a~GaD~v~~v~~~~~~d~---~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~ 99 (219)
+-+.++.|....++ +++.....|.+.++++-.-..|.+ +.-=+.|..+-+..+.-+ |-+ |=..+..++.
T Consensus 114 kPvIlSTG~stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~~~v---G~S--DHt~g~~~~~ 188 (241)
T PF03102_consen 114 KPVILSTGMSTLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFGVPV---GYS--DHTDGIEAPI 188 (241)
T ss_dssp S-EEEE-TT--HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHHSTSEE---EEE--E-SSSSHHHH
T ss_pred CcEEEECCCCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHhcCCCE---EeC--CCCCCcHHHH
Confidence 34667777654333 333333557777776653333211 111122333333344222 322 2233678899
Q ss_pred HHHHcCCCcccceeEEEEeeCCeEEEEEEcC
Q psy9408 100 LAALLNWPQATFASKIVLKKNNKILVTQEIE 130 (219)
Q Consensus 100 lA~~Lg~p~vt~v~~l~~~~~~~~~~~R~~~ 130 (219)
.|..||+-++ +.+++..|...
T Consensus 189 ~AvalGA~vI----------EKHfTldr~~~ 209 (241)
T PF03102_consen 189 AAVALGARVI----------EKHFTLDRNLK 209 (241)
T ss_dssp HHHHTT-SEE----------EEEB-S-TTSC
T ss_pred HHHHcCCeEE----------EEEEECCCCCC
Confidence 9999998775 45565555443
No 407
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=28.90 E-value=2.3e+02 Score=25.00 Aligned_cols=70 Identities=16% Similarity=0.274 Sum_probs=45.0
Q ss_pred hHHHHHHHHhCCCCEEEEEecCC-----CC----CHHHHHHHHHHHHHhcC---CCEEEEcccccCCCcCcHHHHHHHHc
Q psy9408 37 CKEILQIAMAMGVDRAILIETDT-----IL----QSLSVAKLLQVIVKKEN---PQLVILGKQSIDSDNNQTGQMLAALL 104 (219)
Q Consensus 37 ~~~~lr~~~a~GaD~v~~v~~~~-----~~----d~~~~A~~la~~ik~~~---~dlVl~G~~s~d~~~~~v~~~lA~~L 104 (219)
+.-..+-+-.+|+|+++.++-.. .| +.......+++++++.. .+++++|-- ..+-..+-.+|..|
T Consensus 97 ak~va~lL~~~g~d~vi~vDlHs~~i~~~F~ip~~~l~~~~~~~~~i~~~~~~~~~~vvVspd---~gg~~~a~~~a~~l 173 (302)
T PLN02369 97 AKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKTISSPDLVVVSPD---VGGVARARAFAKKL 173 (302)
T ss_pred HHHHHHHHHhcCCCEEEEEECCchHHhhccCCceecccchHHHHHHHHHhCCCCCceEEEEEC---cChHHHHHHHHHHc
Confidence 33445555577999999998532 12 23344566777776542 467777654 35567888899999
Q ss_pred -CCCcc
Q psy9408 105 -NWPQA 109 (219)
Q Consensus 105 -g~p~v 109 (219)
+.|+.
T Consensus 174 ~~~~~~ 179 (302)
T PLN02369 174 SDAPLA 179 (302)
T ss_pred CCCCEE
Confidence 66653
No 408
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=28.78 E-value=93 Score=29.78 Aligned_cols=46 Identities=9% Similarity=0.198 Sum_probs=29.7
Q ss_pred HHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEccccc
Q psy9408 38 KEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSI 89 (219)
Q Consensus 38 ~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~ 89 (219)
.+..+++-+.|+|-++++.+.. ++.+ ..||+-+ .+.|+||.|++-.
T Consensus 172 ~~~v~~Lk~~g~D~II~lsH~g-~~~d---~~la~~~--~~iD~IigGHsH~ 217 (550)
T TIGR01530 172 QIAANALKQQGINKIILLSHAG-FEKN---CEIAQKI--NDIDVIVSGDSHY 217 (550)
T ss_pred HHHHHHHHhCCCCEEEEEecCC-cHHH---HHHHhcC--CCCCEEEeCCCCc
Confidence 3445666678999999999643 3222 2333332 2699999998754
No 409
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=28.77 E-value=1.9e+02 Score=24.73 Aligned_cols=13 Identities=15% Similarity=0.128 Sum_probs=7.3
Q ss_pred echHHHHHHHHhh
Q psy9408 202 VKNVIELIDKLKN 214 (219)
Q Consensus 202 ~~~~~~l~~~L~~ 214 (219)
++.+.+.++.+.+
T Consensus 302 l~~~~~a~~~~~~ 314 (324)
T cd08291 302 LALTLEAIAFYSK 314 (324)
T ss_pred HHHHHHHHHHHHh
Confidence 3456666666654
No 410
>PRK04182 cytidylate kinase; Provisional
Probab=28.66 E-value=41 Score=26.12 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=18.8
Q ss_pred EEEEcccccCCCcCcHHHHHHHHcCCCccc
Q psy9408 81 LVILGKQSIDSDNNQTGQMLAALLNWPQAT 110 (219)
Q Consensus 81 lVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt 110 (219)
++++|...+|+ ..++..||.+||+|++.
T Consensus 3 I~i~G~~GsGK--stia~~la~~lg~~~id 30 (180)
T PRK04182 3 ITISGPPGSGK--TTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEECCCCCCH--HHHHHHHHHHcCCcEec
Confidence 45666665553 46778888888887765
No 411
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=28.53 E-value=2.7e+02 Score=24.89 Aligned_cols=84 Identities=14% Similarity=0.111 Sum_probs=53.2
Q ss_pred cEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCC----C------CCHH------HHHHHHHHHHHhc-----------
Q psy9408 25 KEIIAISCGNKKCKEILQIAMAMGVDRAILIETDT----I------LQSL------SVAKLLQVIVKKE----------- 77 (219)
Q Consensus 25 ~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~----~------~d~~------~~A~~la~~ik~~----------- 77 (219)
.+|..+-+|+-. -..++.+..+|+.++.++++|. + ++.. .-+.++++.+++.
T Consensus 25 ~~VlIiG~GglG-s~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~~ 103 (338)
T PRK12475 25 KHVLIVGAGALG-AANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVVT 103 (338)
T ss_pred CcEEEECCCHHH-HHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEec
Confidence 467766666543 4678889999999999999763 1 2211 1233333333332
Q ss_pred ------------CCCEEEEcccccCCCcCcHHHHHHHHcCCCcccc
Q psy9408 78 ------------NPQLVILGKQSIDSDNNQTGQMLAALLNWPQATF 111 (219)
Q Consensus 78 ------------~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~ 111 (219)
++|+|+.+... ..++.+--.++...++|++..
T Consensus 104 ~~~~~~~~~~~~~~DlVid~~D~--~~~r~~in~~~~~~~ip~i~~ 147 (338)
T PRK12475 104 DVTVEELEELVKEVDLIIDATDN--FDTRLLINDLSQKYNIPWIYG 147 (338)
T ss_pred cCCHHHHHHHhcCCCEEEEcCCC--HHHHHHHHHHHHHcCCCEEEE
Confidence 46777776533 245666777888999998754
No 412
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=28.53 E-value=1.8e+02 Score=25.24 Aligned_cols=50 Identities=12% Similarity=-0.013 Sum_probs=31.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCccc
Q psy9408 58 DTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQAT 110 (219)
Q Consensus 58 ~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt 110 (219)
|...+|........+++.+.+++.|+-+..|.. ......+++..+.|+++
T Consensus 47 D~~~~p~~a~~~~~~Li~~~~V~aiiG~~~s~~---~~a~~~~~~~~~vp~i~ 96 (334)
T cd06356 47 DTQSDNERYQQYAQRLALQDKVDVVWGGISSAS---REAIRPIMDRTKQLYFY 96 (334)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEeCcchHH---HHHHHHHHHhcCceEEe
Confidence 335677777777778887777887776655421 11223356677777764
No 413
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=28.49 E-value=3.3e+02 Score=22.33 Aligned_cols=59 Identities=20% Similarity=0.282 Sum_probs=35.8
Q ss_pred cEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEc
Q psy9408 25 KEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILG 85 (219)
Q Consensus 25 ~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G 85 (219)
.+|.++.-..+++ .....|...|.. ++.++.....+...+...+.+.+++.+||++++-
T Consensus 29 ~~I~~vvs~~~~~-~~~~~a~~~gIp-~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~iv~~ 87 (200)
T PRK05647 29 AEIVAVISDRPDA-YGLERAEAAGIP-TFVLDHKDFPSREAFDAALVEALDAYQPDLVVLA 87 (200)
T ss_pred cEEEEEEecCccc-hHHHHHHHcCCC-EEEECccccCchhHhHHHHHHHHHHhCcCEEEhH
Confidence 4565544333332 345667778888 3444422223445566778888888999999863
No 414
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=28.40 E-value=3.6e+02 Score=22.69 Aligned_cols=52 Identities=12% Similarity=0.065 Sum_probs=35.4
Q ss_pred CCHhhHHHHHHHHHhhhhcCCCcEEEEEEecC--c--chHHHHHHHHhCCCCEEEEEe
Q psy9408 3 INPFDEIAIESAIRLRESSNKIKEIIAISCGN--K--KCKEILQIAMAMGVDRAILIE 56 (219)
Q Consensus 3 iNp~D~~Ale~A~~l~e~~g~g~~V~av~~G~--~--~~~~~lr~~~a~GaD~v~~v~ 56 (219)
-|||=...+....+.+++. |..+.....+. . ...+.++.++..++|-+++..
T Consensus 10 ~n~f~~~~~~gi~~~a~~~--g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~ 65 (295)
T TIGR02955 10 KDSYWLSINYGMVEQAKHL--GVELKVLEAGGYPNLDKQLAQIEQCKSWGADAILLGT 65 (295)
T ss_pred CcHHHHHHHHHHHHHHHHh--CCEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 4788777777666666665 46777666542 1 123577888999999988764
No 415
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=28.34 E-value=3.5e+02 Score=22.48 Aligned_cols=60 Identities=8% Similarity=0.024 Sum_probs=34.9
Q ss_pred cEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcc
Q psy9408 25 KEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGK 86 (219)
Q Consensus 25 ~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~ 86 (219)
.+|.+|.--.+. ...++.|..+|..-.. .+.....+.......+.+.+++.+||+|++-.
T Consensus 27 ~~i~~visn~~~-~~~~~~A~~~gIp~~~-~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~ag 86 (207)
T PLN02331 27 GDVVVVVTNKPG-CGGAEYARENGIPVLV-YPKTKGEPDGLSPDELVDALRGAGVDFVLLAG 86 (207)
T ss_pred eEEEEEEEeCCC-ChHHHHHHHhCCCEEE-eccccCCCcccchHHHHHHHHhcCCCEEEEeC
Confidence 466665555443 3557888899988543 33211111112224556667888999999744
No 416
>PRK06194 hypothetical protein; Provisional
Probab=28.28 E-value=3.5e+02 Score=22.53 Aligned_cols=73 Identities=11% Similarity=0.062 Sum_probs=41.7
Q ss_pred HHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhc-CCCEEEEcccc
Q psy9408 11 IESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKE-NPQLVILGKQS 88 (219)
Q Consensus 11 le~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~-~~dlVl~G~~s 88 (219)
.+.|.+|.++ |.+|+++.-.....++...+....|. ++..+..| -.|......++.++.++. ++|+|+.-...
T Consensus 20 ~~la~~l~~~---G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D-~~d~~~~~~~~~~~~~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 20 LAFARIGAAL---GMKLVLADVQQDALDRAVAELRAQGA-EVLGVRTD-VSDAAQVEALADAALERFGAVHLLFNNAGV 93 (287)
T ss_pred HHHHHHHHHC---CCEEEEEeCChHHHHHHHHHHHhcCC-eEEEEECC-CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 3456677764 46777655433323344444444454 45555533 457777777777776665 47888765543
No 417
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=28.27 E-value=2.6e+02 Score=24.64 Aligned_cols=16 Identities=13% Similarity=-0.006 Sum_probs=6.9
Q ss_pred HHHHHhCCCCEEEEEe
Q psy9408 41 LQIAMAMGVDRAILIE 56 (219)
Q Consensus 41 lr~~~a~GaD~v~~v~ 56 (219)
.+.+...||.+++.+.
T Consensus 231 a~~Lk~~GA~~V~~~~ 246 (301)
T PRK07199 231 ARQLRAAGAASPDCVV 246 (301)
T ss_pred HHHHHHCCCcEEEEEE
Confidence 3334444444444443
No 418
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=28.19 E-value=58 Score=26.49 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=25.2
Q ss_pred CCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 79 PQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 79 ~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
..+||+|-...|++ .++-+||..|+.|++
T Consensus 3 ~~IvLiG~mGaGKS--TIGr~LAk~L~~~F~ 31 (172)
T COG0703 3 MNIVLIGFMGAGKS--TIGRALAKALNLPFI 31 (172)
T ss_pred ccEEEEcCCCCCHh--HHHHHHHHHcCCCcc
Confidence 46899999887764 599999999999988
No 419
>KOG3076|consensus
Probab=28.18 E-value=3.3e+02 Score=22.77 Aligned_cols=72 Identities=17% Similarity=0.129 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecC----C-CCCHHHHHHHHHHHHHhcCCCEE
Q psy9408 8 EIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETD----T-ILQSLSVAKLLQVIVKKENPQLV 82 (219)
Q Consensus 8 ~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~----~-~~d~~~~A~~la~~ik~~~~dlV 82 (219)
..||-.|-+--.. |+...|+-|.-..+ ....|..+...|... .++..- + .+| .-|++.+++.++|+|
T Consensus 20 lqaLid~~r~~~l-~~~a~VvlviSnk~-~~~GL~rA~~~gIPt-~vip~k~~a~R~~~d-----~eL~~~l~e~~~d~v 91 (206)
T KOG3076|consen 20 LQALIDATRDGSL-GPNADVVLVISNKK-GVYGLERAADAGIPT-LVIPHKRFASREKYD-----NELAEVLLELGTDLV 91 (206)
T ss_pred HHHHHHhhcCCCc-CCCceEEEEEeccc-cchhhhHHHHCCCCE-EEeccccccccccCc-----HHHHHHHHHhCCCEE
Confidence 4455554433222 32345554444433 345677888888776 444431 1 345 678889999999999
Q ss_pred EEccc
Q psy9408 83 ILGKQ 87 (219)
Q Consensus 83 l~G~~ 87 (219)
+|+.-
T Consensus 92 ~lAG~ 96 (206)
T KOG3076|consen 92 CLAGY 96 (206)
T ss_pred Eehhh
Confidence 98763
No 420
>PRK00549 competence damage-inducible protein A; Provisional
Probab=28.16 E-value=4.8e+02 Score=24.05 Aligned_cols=71 Identities=13% Similarity=0.062 Sum_probs=41.2
Q ss_pred HHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccceeEE
Q psy9408 41 LQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKI 115 (219)
Q Consensus 41 lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l 115 (219)
.+.+..+|++-.....- .-|.+.+.++|.++. .+.|+|++.....-+..-.+...++..+|.++.-+-..+
T Consensus 26 ~~~L~~~G~~v~~~~~v--~Dd~~~I~~~l~~a~--~~~DlVItTGGlGpt~dD~t~ea~a~~~g~~l~~~~~~~ 96 (414)
T PRK00549 26 SEKLAELGIDVYHQTVV--GDNPERLLSALEIAE--ERSDLIITTGGLGPTKDDLTKETVAKFLGRELVLDEEAL 96 (414)
T ss_pred HHHHHHCCCeEEEEEEe--CCCHHHHHHHHHHhc--cCCCEEEECCCCCCCCCccHHHHHHHHhCCCCcCCHHHH
Confidence 34566788764432221 124566677776654 367877765544333435566677777998877544333
No 421
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=28.09 E-value=74 Score=28.82 Aligned_cols=40 Identities=30% Similarity=0.288 Sum_probs=28.0
Q ss_pred HHHHhcCCCEEEE-cccccCCCcCcHHH-HHHHHcCCCcccceeEEEE
Q psy9408 72 VIVKKENPQLVIL-GKQSIDSDNNQTGQ-MLAALLNWPQATFASKIVL 117 (219)
Q Consensus 72 ~~ik~~~~dlVl~-G~~s~d~~~~~v~~-~lA~~Lg~p~vt~v~~l~~ 117 (219)
+++++.+||+|+. |.-.+ +|+ ..|..+++|.+..-++...
T Consensus 85 ~il~~~kPd~vig~Ggyvs------~P~~~Aa~~~~iPv~ihEqn~~~ 126 (357)
T COG0707 85 KILKKLKPDVVIGTGGYVS------GPVGIAAKLLGIPVIIHEQNAVP 126 (357)
T ss_pred HHHHHcCCCEEEecCCccc------cHHHHHHHhCCCCEEEEecCCCc
Confidence 4678889999997 44442 444 4556689999877776643
No 422
>COG3443 Predicted periplasmic or secreted protein [General function prediction only]
Probab=28.07 E-value=2.2e+02 Score=23.26 Aligned_cols=62 Identities=13% Similarity=0.036 Sum_probs=46.5
Q ss_pred cCcHHHHHHHHcCCCcccceeEEEEeeCCeEEEEEEcCCeEEEEEEcCCEEEEEecCCCCCCC
Q psy9408 93 NNQTGQMLAALLNWPQATFASKIVLKKNNKILVTQEIEDGKETILLSLPAIITTDLRMNEPRY 155 (219)
Q Consensus 93 ~~~v~~~lA~~Lg~p~vt~v~~l~~~~~~~~~~~R~~~gG~~~~~~~~P~vvtv~~~~~~pr~ 155 (219)
+...+...=+...-++.|+|..|.++ ++.+++.|.-.--..+.....--++|-..|....||
T Consensus 63 ~~ktaaeyk~YY~kGY~Tdv~~I~I~-~~tvtF~k~g~~~s~~Y~y~G~kILtY~kGnRGVRy 124 (193)
T COG3443 63 GKKTAAEYKAYYRKGYKTDVERIGID-GDTVTFFKNGKPTSGKYAYDGYKILTYKKGNRGVRY 124 (193)
T ss_pred ccccHHHHHHHHhcccccceeEEEEc-CCEEEEEECCceeeEEEccCCEEEEeecCCCCceEE
Confidence 44567788888999999999999999 999999884322223455566678888887666664
No 423
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=27.98 E-value=3.5e+02 Score=23.87 Aligned_cols=32 Identities=16% Similarity=0.270 Sum_probs=24.3
Q ss_pred HHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHH
Q psy9408 38 KEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVI 73 (219)
Q Consensus 38 ~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ 73 (219)
.+.+.+++..|+|-+.+ + +++++.+-+++..+
T Consensus 198 le~~~eAl~agaDiImL-D---Nm~~e~~~~av~~l 229 (280)
T COG0157 198 LEEAEEALEAGADIIML-D---NMSPEELKEAVKLL 229 (280)
T ss_pred HHHHHHHHHcCCCEEEe-c---CCCHHHHHHHHHHh
Confidence 56689999999995554 4 68888777776654
No 424
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=27.97 E-value=3.7e+02 Score=24.98 Aligned_cols=38 Identities=13% Similarity=0.122 Sum_probs=23.1
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcc
Q psy9408 49 VDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGK 86 (219)
Q Consensus 49 aD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~ 86 (219)
+|+.+.+..+.....+.-...|.+++++.++|.|+.|.
T Consensus 48 aD~~~~i~p~~~~~~y~d~~~i~~~a~~~~~daI~pg~ 85 (467)
T PRK12833 48 ADEAVHIGPSHAAKSYLNPAAILAAARQCGADAIHPGY 85 (467)
T ss_pred CCEEEecCCCCccccccCHHHHHHHHHHhCCCEEEECC
Confidence 78888775321111111124677788888999998765
No 425
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=27.96 E-value=2.7e+02 Score=23.88 Aligned_cols=99 Identities=16% Similarity=0.203 Sum_probs=59.5
Q ss_pred CCHhhHHHHHHHHHhhhhcCCCcEEEEEEecC-----cchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhc
Q psy9408 3 INPFDEIAIESAIRLRESSNKIKEIIAISCGN-----KKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKE 77 (219)
Q Consensus 3 iNp~D~~Ale~A~~l~e~~g~g~~V~av~~G~-----~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~ 77 (219)
.||+=.+=|.+|.+|-++ |. .....+|=|. .+++..-+.++++|++.--.+-++..++++.-+...+++.+.
T Consensus 62 ps~~l~~Rl~~A~~LYk~-gk-~~~ilvSGg~~~~~~~Ea~~M~~yLi~~GVp~e~Ii~e~~s~nT~en~~~a~~i~~~- 138 (239)
T PRK10834 62 INQYYRYRIQGAINAYNS-GK-VNYLLLSGDNALQSYNEPMTMRKDLIAAGVDPSDIVLDYAGFRTLDSIVRTRKVFDT- 138 (239)
T ss_pred cCHHHHHHHHHHHHHHHh-CC-CCEEEEeCCCCCCCCCHHHHHHHHHHHcCCCHHHEEecCCCCCHHHHHHHHHHHhCC-
Confidence 466666778899998876 32 2334444331 234555677999997654333335678888777776676653
Q ss_pred CCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 78 NPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 78 ~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
-.++++-... .-.=+-.+|.++|+..+
T Consensus 139 -~~~iIVTq~f----Hm~RA~~ia~~~Gi~~~ 165 (239)
T PRK10834 139 -NDFIIITQRF----HCERALFIALHMGIQAQ 165 (239)
T ss_pred -CCEEEECCHH----HHHHHHHHHHHcCCceE
Confidence 2355554332 12235677888888543
No 426
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=27.93 E-value=1.5e+02 Score=25.80 Aligned_cols=60 Identities=18% Similarity=0.061 Sum_probs=38.7
Q ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCccccee
Q psy9408 51 RAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFAS 113 (219)
Q Consensus 51 ~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~ 113 (219)
++-++.-|...++........+++.+.+.+.|+-+..|.. ..-...+++..++|+++...
T Consensus 47 ~i~l~~~D~~~~~~~a~~~a~~li~~~~v~avvG~~~s~~---~~~~~~~~~~~~ip~i~~~~ 106 (362)
T cd06343 47 KIELIVEDDGYSPPKTVEQTRKLVESDEVFAMVGGLGTPT---NLAVQKYLNEKKVPQLFPAS 106 (362)
T ss_pred EEEEEEecCCCChHHHHHHHHHHHhhcCeEEEEecCCcHH---HHHhHHHHHhcCCceEeccc
Confidence 3433333446788888888888888777777775544421 22334566788999997543
No 427
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=27.80 E-value=3.4e+02 Score=22.14 Aligned_cols=82 Identities=15% Similarity=0.111 Sum_probs=50.6
Q ss_pred CcEEEEEEecCc-----------chHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhc---CCCEEEEccccc
Q psy9408 24 IKEIIAISCGNK-----------KCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKE---NPQLVILGKQSI 89 (219)
Q Consensus 24 g~~V~av~~G~~-----------~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~---~~dlVl~G~~s~ 89 (219)
|.+|.++++=.+ +.+.+-+.|-++|..-.+. +.+. +.+.+.+.+...+++. +++.|++|.-.+
T Consensus 23 G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i-~~~~--~~e~~~~~l~~~l~~~~~~g~~~vv~G~i~s 99 (194)
T cd01994 23 GHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRI-EISG--EEEDEVEDLKELLRKLKEEGVDAVVFGAILS 99 (194)
T ss_pred CCEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEE-eCCC--CchHHHHHHHHHHHHHHHcCCCEEEECcccc
Confidence 367777764311 2334446678899985433 3221 3334445555555443 599999999987
Q ss_pred CCCcCcHHHHHHHHcCCCcc
Q psy9408 90 DSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 90 d~~~~~v~~~lA~~Lg~p~v 109 (219)
|. -+..--+++.++|+-.+
T Consensus 100 d~-~~~~~e~~~~~~gl~~~ 118 (194)
T cd01994 100 EY-QRTRVERVCERLGLEPL 118 (194)
T ss_pred HH-HHHHHHHHHHHcCCEEE
Confidence 74 46667778888887655
No 428
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=27.71 E-value=4.6e+02 Score=23.66 Aligned_cols=91 Identities=14% Similarity=0.191 Sum_probs=51.1
Q ss_pred HHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHH-HHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEccc
Q psy9408 9 IAIESAIRLRESSNKIKEIIAISCGNKKCKEILQI-AMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQ 87 (219)
Q Consensus 9 ~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~-~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~ 87 (219)
.+|++..+|+++. ..+..+.+|.+...+.+++ +-.+|.+..+.+.. ..+... +.++.+ ..|+.++...
T Consensus 239 ~ll~a~~~l~~~~---~~~~l~ivG~G~~~~~l~~~~~~~~l~~~V~~~G--~~~~~e----l~~~l~--~aDv~v~pS~ 307 (406)
T PRK15427 239 VAIEACRQLKEQG---VAFRYRILGIGPWERRLRTLIEQYQLEDVVEMPG--FKPSHE----VKAMLD--DADVFLLPSV 307 (406)
T ss_pred HHHHHHHHHHhhC---CCEEEEEEECchhHHHHHHHHHHcCCCCeEEEeC--CCCHHH----HHHHHH--hCCEEEECCc
Confidence 4677777777652 3566667776554455554 44578655454442 122222 333343 4688888764
Q ss_pred c-cCC--CcCcHHHHHHHHcCCCccc
Q psy9408 88 S-IDS--DNNQTGQMLAALLNWPQAT 110 (219)
Q Consensus 88 s-~d~--~~~~v~~~lA~~Lg~p~vt 110 (219)
. .++ ++--+...=|-.+|.|+|+
T Consensus 308 ~~~~g~~Eg~p~~llEAma~G~PVI~ 333 (406)
T PRK15427 308 TGADGDMEGIPVALMEAMAVGIPVVS 333 (406)
T ss_pred cCCCCCccCccHHHHHHHhCCCCEEE
Confidence 3 222 3333455567778888774
No 429
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=27.67 E-value=48 Score=25.06 Aligned_cols=27 Identities=26% Similarity=0.505 Sum_probs=22.1
Q ss_pred EEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 81 LVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 81 lVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
++|+|...+|+ ..++-.||+.||++++
T Consensus 2 i~l~G~~GsGK--stla~~la~~l~~~~~ 28 (154)
T cd00464 2 IVLIGMMGAGK--TTVGRLLAKALGLPFV 28 (154)
T ss_pred EEEEcCCCCCH--HHHHHHHHHHhCCCEE
Confidence 67888877665 4689999999999977
No 430
>KOG3347|consensus
Probab=27.64 E-value=72 Score=25.82 Aligned_cols=32 Identities=16% Similarity=0.285 Sum_probs=26.8
Q ss_pred hcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 76 KENPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 76 ~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
...|+++++|.--.|.. .++-+||+++|++++
T Consensus 5 r~~PNILvtGTPG~GKs--tl~~~lae~~~~~~i 36 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKS--TLAERLAEKTGLEYI 36 (176)
T ss_pred hcCCCEEEeCCCCCCch--hHHHHHHHHhCCceE
Confidence 46799999998766653 699999999999976
No 431
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=27.59 E-value=25 Score=27.42 Aligned_cols=14 Identities=36% Similarity=0.518 Sum_probs=13.4
Q ss_pred HHHHHHHHcCCCcc
Q psy9408 96 TGQMLAALLNWPQA 109 (219)
Q Consensus 96 v~~~lA~~Lg~p~v 109 (219)
+|-+||.+||+|++
T Consensus 8 vg~~lA~~L~~~fi 21 (158)
T PF01202_consen 8 VGKLLAKRLGRPFI 21 (158)
T ss_dssp HHHHHHHHHTSEEE
T ss_pred HHHHHHHHhCCCcc
Confidence 89999999999988
No 432
>PRK07677 short chain dehydrogenase; Provisional
Probab=27.55 E-value=3.4e+02 Score=22.14 Aligned_cols=70 Identities=16% Similarity=0.136 Sum_probs=41.8
Q ss_pred HHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhc-CCCEEEEc
Q psy9408 11 IESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKE-NPQLVILG 85 (219)
Q Consensus 11 le~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~-~~dlVl~G 85 (219)
...|.++.+. |..|+++.-.....++...++...+ +++..+..| -.|++...+.+.++.++. .+|.|+.-
T Consensus 15 ~~ia~~l~~~---G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D-~~~~~~~~~~~~~~~~~~~~id~lI~~ 85 (252)
T PRK07677 15 KAMAKRFAEE---GANVVITGRTKEKLEEAKLEIEQFP-GQVLTVQMD-VRNPEDVQKMVEQIDEKFGRIDALINN 85 (252)
T ss_pred HHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEec-CCCHHHHHHHHHHHHHHhCCccEEEEC
Confidence 4456667764 4677776655443333333343344 455555533 457788888888877765 47988854
No 433
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=27.48 E-value=1.4e+02 Score=25.20 Aligned_cols=94 Identities=12% Similarity=0.043 Sum_probs=51.0
Q ss_pred HHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEe-cCCCCCHHHHHHHHHHHHHhcCCCEEEEcc
Q psy9408 8 EIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIE-TDTILQSLSVAKLLQVIVKKENPQLVILGK 86 (219)
Q Consensus 8 ~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~-~~~~~d~~~~A~~la~~ik~~~~dlVl~G~ 86 (219)
.+..+.+..|.++ |.+|+.++.+.......... .+.. .+... ....+........+.+.+++.+||+|.+-.
T Consensus 23 ~~~~~l~~~L~~~---g~~V~v~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Divh~~~ 95 (335)
T cd03802 23 RVVAALTEGLVAR---GHEVTLFASGDSKTAAPLVP---VVPE-PLRLDAPGRDRAEAEALALAERALAAGDFDIVHNHS 95 (335)
T ss_pred HHHHHHHHHHHhc---CceEEEEecCCCCcccceee---ccCC-CcccccchhhHhhHHHHHHHHHHHhcCCCCEEEecC
Confidence 4566777777764 46888888776431111100 0000 00000 000123455667788888989999998754
Q ss_pred cccCCCcCcHHHHHHHHcCCCcccceeEE
Q psy9408 87 QSIDSDNNQTGQMLAALLNWPQATFASKI 115 (219)
Q Consensus 87 ~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l 115 (219)
.... .. ++..++.|++...-+.
T Consensus 96 ~~~~----~~---~~~~~~~~~v~~~h~~ 117 (335)
T cd03802 96 LHLP----LP---FARPLPVPVVTTLHGP 117 (335)
T ss_pred cccc----hh---hhcccCCCEEEEecCC
Confidence 3321 11 6778888877554433
No 434
>PRK14851 hypothetical protein; Provisional
Probab=27.45 E-value=3.1e+02 Score=27.23 Aligned_cols=33 Identities=15% Similarity=0.170 Sum_probs=25.9
Q ss_pred cEEEEEEecCcchHHHHHHHHhCCCCEEEEEecC
Q psy9408 25 KEIIAISCGNKKCKEILQIAMAMGVDRAILIETD 58 (219)
Q Consensus 25 ~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~ 58 (219)
.+|.++-+|+-. -..+..+...|+.+..++++|
T Consensus 44 ~~VlIvG~GGlG-s~va~~Lar~GVG~l~LvD~D 76 (679)
T PRK14851 44 AKVAIPGMGGVG-GVHLITMVRTGIGRFHIADFD 76 (679)
T ss_pred CeEEEECcCHHH-HHHHHHHHHhCCCeEEEEcCC
Confidence 577777777643 356788889999999999976
No 435
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=27.44 E-value=2.4e+02 Score=21.71 Aligned_cols=51 Identities=20% Similarity=0.232 Sum_probs=27.8
Q ss_pred HHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcC-CCEEEEcccccCC
Q psy9408 39 EILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKEN-PQLVILGKQSIDS 91 (219)
Q Consensus 39 ~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~-~dlVl~G~~s~d~ 91 (219)
+.++.+++ |+|.+|..-.....+ ...+..+.+++++.+ .-+|+++..+..+
T Consensus 52 ~~~~~al~-~~d~vi~~~~~~~~~-~~~~~~~~~a~~~~~~~~~v~~s~~~~~~ 103 (183)
T PF13460_consen 52 DSVKAALK-GADAVIHAAGPPPKD-VDAAKNIIEAAKKAGVKRVVYLSSAGVYR 103 (183)
T ss_dssp HHHHHHHT-TSSEEEECCHSTTTH-HHHHHHHHHHHHHTTSSEEEEEEETTGTT
T ss_pred hhhhhhhh-hcchhhhhhhhhccc-ccccccccccccccccccceeeeccccCC
Confidence 35666666 788777765432223 344445555555544 4566666555443
No 436
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=27.44 E-value=3.4e+02 Score=22.13 Aligned_cols=73 Identities=22% Similarity=0.272 Sum_probs=41.7
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccceeEEEEeeCCeEEEE
Q psy9408 49 VDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIVLKKNNKILVT 126 (219)
Q Consensus 49 aD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~~~~~~~~~ 126 (219)
-+++++++| -..+=.+..++.+++++.+..++=++.= .|...-.-...+ ..+|+|+.+-++--+++ +|.+++.
T Consensus 117 G~rVLIVDD--vvtTGgT~~a~~~ll~~aGa~Vvgv~~l-vd~~~~~g~~~l-~~~gvpv~sL~~~~~l~-~g~~~~~ 189 (191)
T TIGR01744 117 QDRVLIIDD--FLANGQAAHGLVDIAKQAGAKIAGIGIV-IEKSFQNGRQEL-VELGYRVESLARIQSLE-EGKVTFV 189 (191)
T ss_pred cCEEEEEEe--hhccChHHHHHHHHHHHCCCEEEEEEEE-EEecCccHHHHH-HhcCCcEEEEEEEeeEe-CCEEEEe
Confidence 356666663 3344566777888888877654433331 121100012233 34799988777666687 7776654
No 437
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=27.41 E-value=2.9e+02 Score=25.80 Aligned_cols=69 Identities=23% Similarity=0.180 Sum_probs=36.5
Q ss_pred HHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcc
Q psy9408 9 IAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGK 86 (219)
Q Consensus 9 ~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~ 86 (219)
.++..++..++ + |.+++++..-+.. ... .. .-||+.|.+.... ...+.-...|.+++++.++|.|+.|.
T Consensus 13 ~a~~~i~aa~~-l--G~~~v~v~~~~d~--~~~--~~-~~AD~~~~i~~~~-~~~y~d~~~i~~~a~~~~iDaI~pg~ 81 (478)
T PRK08463 13 IAVRVIRACRD-L--HIKSVAIYTEPDR--ECL--HV-KIADEAYRIGTDP-IKGYLDVKRIVEIAKACGADAIHPGY 81 (478)
T ss_pred HHHHHHHHHHH-c--CCeEEEEECCCcc--CCc--ch-hhcCEEEEcCCCc-hhcccCHHHHHHHHHHhCCCEEEECC
Confidence 34444444444 3 4677766654321 100 01 1278888876421 11111124667788888899998765
No 438
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=27.37 E-value=3e+02 Score=24.37 Aligned_cols=50 Identities=20% Similarity=0.226 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHHhcCCCEEE-EcccccCCCcCcHHHHHHHHcCCCcccceeEE
Q psy9408 62 QSLSVAKLLQVIVKKENPQLVI-LGKQSIDSDNNQTGQMLAALLNWPQATFASKI 115 (219)
Q Consensus 62 d~~~~A~~la~~ik~~~~dlVl-~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l 115 (219)
.+......+.+..++.++|.|+ +|..|. -+++-.+|..++.|++.=-|..
T Consensus 60 p~~~~v~~~~~~~~~~~~D~iIavGGGs~----~D~aK~ia~~~~~p~i~VPTT~ 110 (347)
T cd08172 60 CSEENIERLAAQAKENGADVIIGIGGGKV----LDTAKAVADRLGVPVITVPTLA 110 (347)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCcHH----HHHHHHHHHHhCCCEEEecCcc
Confidence 5555666677777888999887 555443 4488889999999987655554
No 439
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=27.35 E-value=1.8e+02 Score=26.20 Aligned_cols=79 Identities=22% Similarity=0.147 Sum_probs=46.7
Q ss_pred chHHHHHHHHhCCCC-EEEEEecCCCCCHH-HHHHHH---------------HHHHHhcCCCEEEEcccccCCCcC----
Q psy9408 36 KCKEILQIAMAMGVD-RAILIETDTILQSL-SVAKLL---------------QVIVKKENPQLVILGKQSIDSDNN---- 94 (219)
Q Consensus 36 ~~~~~lr~~~a~GaD-~v~~v~~~~~~d~~-~~A~~l---------------a~~ik~~~~dlVl~G~~s~d~~~~---- 94 (219)
.+...++.+...|-. ++|+.+........ .+|..| +.++++.+.|.|++|..+.-.+|+
T Consensus 166 tal~~l~~A~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VivGAd~v~~nG~v~nk 245 (331)
T TIGR00512 166 TALGVIRSAHEKGRLEHVYADETRPRLQGARLTAWELVQEGIPATLITDSMAAHLMKHGEVDAVIVGADRIAANGDTANK 245 (331)
T ss_pred hHHHHHHHHHHcCCceEEEECCCCchhhHHHHHHHHHHHCCCCEEEEcccHHHHHhcccCCCEEEEcccEEecCCCEeeh
Confidence 356677888777754 44444432222221 234433 334444578999999988765543
Q ss_pred ---cHHHHHHHHcCCCcccceeE
Q psy9408 95 ---QTGQMLAALLNWPQATFASK 114 (219)
Q Consensus 95 ---~v~~~lA~~Lg~p~vt~v~~ 114 (219)
..-+.+|...+.|++.-+-.
T Consensus 246 iGT~~lA~~Ak~~~vPfyV~a~~ 268 (331)
T TIGR00512 246 IGTYQLAVLAKHHGVPFYVAAPT 268 (331)
T ss_pred hhHHHHHHHHHHhCCCEEEeccc
Confidence 34467888889997754443
No 440
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=27.35 E-value=2.7e+02 Score=26.23 Aligned_cols=96 Identities=8% Similarity=0.052 Sum_probs=54.6
Q ss_pred HhhHHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCC----CCCHHHHHHHHHHH-------
Q psy9408 5 PFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDT----ILQSLSVAKLLQVI------- 73 (219)
Q Consensus 5 p~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~----~~d~~~~A~~la~~------- 73 (219)
||...++..+-+++..+ ..|++-.+-...-.+.+.+.--|++-.++. .+.. ..........+...
T Consensus 130 p~Cp~~v~~~~~~a~~~---p~i~~~~id~~~~~~~~~~~~v~~VP~~~i-~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 205 (515)
T TIGR03140 130 QNCPDVVQALNQMALLN---PNISHTMIDGALFQDEVEALGIQGVPAVFL-NGEEFHNGRMDLAELLEKLEETAGVEAAS 205 (515)
T ss_pred CCCHHHHHHHHHHHHhC---CCceEEEEEchhCHHHHHhcCCcccCEEEE-CCcEEEecCCCHHHHHHHHhhccCcccch
Confidence 67788898998998875 245544444333344444444455666654 3221 23344443333322
Q ss_pred --HHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCc
Q psy9408 74 --VKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQ 108 (219)
Q Consensus 74 --ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~ 108 (219)
.++..+|+++.|.... |.-++.-++++|.-.
T Consensus 206 ~~~~~~~~dVvIIGgGpA----Gl~AA~~la~~G~~v 238 (515)
T TIGR03140 206 ALEQLDPYDVLVVGGGPA----GAAAAIYAARKGLRT 238 (515)
T ss_pred hccccCCCCEEEECCCHH----HHHHHHHHHHCCCcE
Confidence 2234589999999764 456666667777543
No 441
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=27.32 E-value=1.3e+02 Score=26.00 Aligned_cols=59 Identities=12% Similarity=0.007 Sum_probs=38.5
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCccccee
Q psy9408 52 AILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFAS 113 (219)
Q Consensus 52 v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~ 113 (219)
+-++.-|...|+....+...+++++.+.+.|+-+.+|. . ..-...+++..++|+++...
T Consensus 40 v~l~~~D~~~~p~~a~~~~~~l~~~~~V~aviG~~~s~--~-~~a~~~~~~~~~vp~i~~~s 98 (334)
T cd06327 40 IELVVADHQNKADVAAAKAREWIDRDGVDMIVGGPNSA--V-ALAVQEVAREKKKIYIVTGA 98 (334)
T ss_pred EEEEEecCCCCchHHHHHHHHHHhhcCceEEECCccHH--H-HHHHHHHHHHhCceEEecCC
Confidence 33333344678888888888999877888887544331 1 11223467888999987553
No 442
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=27.29 E-value=3.1e+02 Score=24.63 Aligned_cols=71 Identities=8% Similarity=0.124 Sum_probs=41.3
Q ss_pred HHHHH-hCCCCEEE-EEecCCCCCHHHHHHHHHHHHHhcCC----CEEE-EcccccCCCcCcHHHHHH--HHcCCCcccc
Q psy9408 41 LQIAM-AMGVDRAI-LIETDTILQSLSVAKLLQVIVKKENP----QLVI-LGKQSIDSDNNQTGQMLA--ALLNWPQATF 111 (219)
Q Consensus 41 lr~~~-a~GaD~v~-~v~~~~~~d~~~~A~~la~~ik~~~~----dlVl-~G~~s~d~~~~~v~~~lA--~~Lg~p~vt~ 111 (219)
+++.+ ..|.+--. ++++.+...+......+.+.+.+.++ |+|+ +|..+. .+++..+| .+.|+|++.-
T Consensus 45 v~~~l~~~g~~~~~~v~~~~e~~~s~~~v~~~~~~l~~~~~~r~~d~IVaiGGG~v----~D~ak~~A~~~~rg~p~i~V 120 (354)
T cd08199 45 LREYFAHHNIPLTILVLRAGEAAKTMDTVLKIVDALDAFGISRRREPVLAIGGGVL----TDVAGLAASLYRRGTPYVRI 120 (354)
T ss_pred HHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCEEEEECCcHH----HHHHHHHHHHhcCCCCEEEE
Confidence 44444 45665332 34543333344445555555666666 8888 666443 44888888 5789998866
Q ss_pred eeEE
Q psy9408 112 ASKI 115 (219)
Q Consensus 112 v~~l 115 (219)
=|.+
T Consensus 121 PTT~ 124 (354)
T cd08199 121 PTTL 124 (354)
T ss_pred cCcc
Confidence 6643
No 443
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=27.23 E-value=4.1e+02 Score=22.93 Aligned_cols=46 Identities=13% Similarity=0.199 Sum_probs=31.4
Q ss_pred HHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEc
Q psy9408 38 KEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILG 85 (219)
Q Consensus 38 ~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G 85 (219)
.+.|+.+.. .++-++++.+...+.+.+-.++..+.+....+++||=
T Consensus 112 ~~LL~~va~--tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~e 157 (250)
T PRK13397 112 FEFLKTLSH--IDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCE 157 (250)
T ss_pred HHHHHHHHc--cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEc
Confidence 345555554 4678888865456777777777766655567899995
No 444
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=27.22 E-value=1.4e+02 Score=25.83 Aligned_cols=52 Identities=19% Similarity=0.058 Sum_probs=36.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccce
Q psy9408 58 DTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFA 112 (219)
Q Consensus 58 ~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v 112 (219)
|...++....+...+++.+.+++.|+-+..|. ...-...++...++|+++..
T Consensus 47 D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~---~~~a~~~~~~~~~vp~i~~~ 98 (344)
T cd06345 47 DTEGSPEDAVRAFERLVSQDKVDAVVGGYSSE---VVLALQDVAAENKVPFIVTG 98 (344)
T ss_pred cCCCCHHHHHHHHHHHhccCCceEEECCcchH---HHHHHHHHHHHcCCcEEecc
Confidence 44678888888888888776778777655442 12234567888899998753
No 445
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=27.19 E-value=1.1e+02 Score=29.29 Aligned_cols=47 Identities=15% Similarity=0.112 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccceeE
Q psy9408 68 KLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASK 114 (219)
Q Consensus 68 ~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~ 114 (219)
+.+++.+.+-+-=+|++|....-....+.--+||++||+|+++....
T Consensus 197 ~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~g~pv~tt~~~ 243 (574)
T PRK06466 197 RKAVEMLLAAKRPVIYSGGGVVLGNASALLTELAHLLNLPVTNTLMG 243 (574)
T ss_pred HHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCEEEcCcc
Confidence 34445555445458888887754444567799999999999865443
No 446
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=27.17 E-value=2e+02 Score=24.71 Aligned_cols=61 Identities=13% Similarity=0.096 Sum_probs=39.7
Q ss_pred hCCCCEEEEEecCCCCCHHHHHHHHHHHHHhc-----CCCEEEEcccccCCCcCcHHHHHHHHcCCC
Q psy9408 46 AMGVDRAILIETDTILQSLSVAKLLQVIVKKE-----NPQLVILGKQSIDSDNNQTGQMLAALLNWP 107 (219)
Q Consensus 46 a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~-----~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p 107 (219)
..|.++-.+...+ ....+-...++.+++++. +.|.|+++..+.+......+.+++.+||.+
T Consensus 35 ~~Gi~~r~~~~~~-~~~~~la~~A~~~al~~ag~~~~~Id~li~~~~~~~~~~~~~~~~l~~~lg~~ 100 (320)
T cd00830 35 RTGIRERRIADPG-ETTSDLAVEAAKKALEDAGIDADDIDLIIVATSTPDYLFPATACLVQARLGAK 100 (320)
T ss_pred ccCceEEeeCCCC-CCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCCcHHHHHHHHhCCC
Confidence 3577776665532 233444455556666543 468898888766544566888999999986
No 447
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.11 E-value=3.5e+02 Score=22.10 Aligned_cols=93 Identities=16% Similarity=0.094 Sum_probs=52.5
Q ss_pred CHhhHHHHHHHHHhhhhcCCCcEEEEEEecCcc--hHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCE
Q psy9408 4 NPFDEIAIESAIRLRESSNKIKEIIAISCGNKK--CKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQL 81 (219)
Q Consensus 4 Np~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~--~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dl 81 (219)
|||....+....+.+++. |..+....-+... ..+.++.+...++|-+++.... .+.. .+.+.+++.+.-+
T Consensus 11 ~~~~~~~~~~i~~~a~~~--g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~--~~~~----~~~~~~~~~~ipv 82 (269)
T cd06281 11 NPLLAQLFSGAEDRLRAA--GYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPGD--ERDP----ELVDALASLDLPI 82 (269)
T ss_pred cccHHHHHHHHHHHHHHc--CCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCC--CCcH----HHHHHHHhCCCCE
Confidence 788888887777777776 4666544333211 2356677888899988886532 1212 1223344455566
Q ss_pred EEEccc------ccCCCcCcHHHHHHHHc
Q psy9408 82 VILGKQ------SIDSDNNQTGQMLAALL 104 (219)
Q Consensus 82 Vl~G~~------s~d~~~~~v~~~lA~~L 104 (219)
|+++.. +.+.|..+.+-.++.+|
T Consensus 83 V~i~~~~~~~~~~V~~d~~~~g~~a~~~l 111 (269)
T cd06281 83 VLLDRDMGGGADAVLFDHAAGMRQAVEYL 111 (269)
T ss_pred EEEecccCCCCCEEEECcHHHHHHHHHHH
Confidence 776643 23334444444444444
No 448
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=27.06 E-value=2.7e+02 Score=25.64 Aligned_cols=39 Identities=21% Similarity=0.115 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 68 KLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 68 ~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
..|.+++++.++|+|++|....- -+--...++.+|+|++
T Consensus 58 ~~l~~~a~~~~iD~Vv~g~E~~l---~~glad~~~~~Gip~~ 96 (426)
T PRK13789 58 SSVQSFLKSNPFDLIVVGPEDPL---VAGFADWAAELGIPCF 96 (426)
T ss_pred HHHHHHHHHcCCCEEEECCchHH---HHHHHHHHHHcCCCcC
Confidence 35566888899999999875421 0111234556888865
No 449
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=26.92 E-value=90 Score=26.09 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=12.3
Q ss_pred EEEEcccccCCCcCcHHHHHHHHcC
Q psy9408 81 LVILGKQSIDSDNNQTGQMLAALLN 105 (219)
Q Consensus 81 lVl~G~~s~d~~~~~v~~~lA~~Lg 105 (219)
+|+||.--.+|| +-|++|.....|
T Consensus 53 ~vlcG~GnNGGD-G~VaAR~L~~~G 76 (203)
T COG0062 53 LVLCGPGNNGGD-GLVAARHLKAAG 76 (203)
T ss_pred EEEECCCCccHH-HHHHHHHHHhCC
Confidence 555555555544 444444444444
No 450
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=26.92 E-value=4.5e+02 Score=23.34 Aligned_cols=94 Identities=17% Similarity=0.210 Sum_probs=67.2
Q ss_pred HHHHHHHHhhhhcCCCcEEEEEEecCcc---------------hHHHHHHHHhCCCCEEEEEecCC---CCCHHHHHHHH
Q psy9408 9 IAIESAIRLRESSNKIKEIIAISCGNKK---------------CKEILQIAMAMGVDRAILIETDT---ILQSLSVAKLL 70 (219)
Q Consensus 9 ~Ale~A~~l~e~~g~g~~V~av~~G~~~---------------~~~~lr~~~a~GaD~v~~v~~~~---~~d~~~~A~~l 70 (219)
..|+.|++.+++. +..++++++-|.. .++-++.+-.+|+|.++++.-+. ..+++..-.
T Consensus 33 ~ll~~a~~~a~~~--~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l~~~gvd~~~v~~F~~~fa~ls~~~Fv~-- 108 (304)
T COG0196 33 KLLAQALEAAEKR--GLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLLAGYGVDALVVLDFDLEFANLSAEEFVE-- 108 (304)
T ss_pred HHHHHHHHHHHHh--CCceEEEEecCCCHHHcCCCCCccccCCHHHHHHHHHhcCCcEEEEEeCCHhHhhCCHHHHHH--
Confidence 4688888888876 4678888886532 34446678899999999998663 456775555
Q ss_pred HHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCC
Q psy9408 71 QVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWP 107 (219)
Q Consensus 71 a~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p 107 (219)
.+++...+.-|++|.-..=|..++-...+-..++-+
T Consensus 109 -~lv~~l~~k~ivvG~DF~FGk~~~g~~~~L~~~~~~ 144 (304)
T COG0196 109 -LLVEKLNVKHIVVGFDFRFGKGRQGNAELLRELGQK 144 (304)
T ss_pred -HHHhccCCcEEEEecccccCCCCCCCHHHHHHhccC
Confidence 567778899999997766555566666665666543
No 451
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=26.84 E-value=42 Score=23.69 Aligned_cols=16 Identities=31% Similarity=0.364 Sum_probs=13.7
Q ss_pred hHHHHHHHHhhcCCCC
Q psy9408 204 NVIELIDKLKNEAKII 219 (219)
Q Consensus 204 ~~~~l~~~L~~~~~~~ 219 (219)
++++|++.|.+++|+|
T Consensus 46 ~a~~Li~FL~~kgKfi 61 (77)
T TIGR03853 46 TADELLQFLLKKGKFI 61 (77)
T ss_pred CHHHHHHHHHHCCCEe
Confidence 3889999999999875
No 452
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=26.83 E-value=2.9e+02 Score=23.54 Aligned_cols=85 Identities=19% Similarity=0.246 Sum_probs=41.4
Q ss_pred EEEEEecCcc-hHHHHHHHHhCCCC-EEEEEecCCCCCHHHHHHHHHH---------------HHHhcCCCEEEEccccc
Q psy9408 27 IIAISCGNKK-CKEILQIAMAMGVD-RAILIETDTILQSLSVAKLLQV---------------IVKKENPQLVILGKQSI 89 (219)
Q Consensus 27 V~av~~G~~~-~~~~lr~~~a~GaD-~v~~v~~~~~~d~~~~A~~la~---------------~ik~~~~dlVl~G~~s~ 89 (219)
-+.++.|... ....++.+...|-. ++|+++..........|+.|++ ++++ +.|.|++|..+.
T Consensus 109 ~~ILT~~~S~~v~~~l~~a~~~~~~~~V~v~es~P~~eG~~~a~~L~~~gi~v~~i~d~~~~~~m~~-~vd~VliGad~v 187 (282)
T PF01008_consen 109 DTILTHGYSSTVERFLLSAKKKGKKFRVIVLESRPYNEGRLMAKELAEAGIPVTLIPDSAVGYVMPR-DVDKVLIGADAV 187 (282)
T ss_dssp EEEEEES--SHHHHHHHHHHHTTEEEEEEEE--TTTTHHHTHHHHHHHTT-EEEEE-GGGHHHHHHC-TESEEEEE-SEE
T ss_pred eEEEEeCCchHHHHHHHHHHHcCCeEEEEEccCCcchhhhhHHHHhhhcceeEEEEechHHHHHHHH-hCCeeEEeeeEE
Confidence 3566777654 46677777776633 3555554333344444444443 2222 367777777766
Q ss_pred CCCcCc-------HHHHHHHHcCCCcccce
Q psy9408 90 DSDNNQ-------TGQMLAALLNWPQATFA 112 (219)
Q Consensus 90 d~~~~~-------v~~~lA~~Lg~p~vt~v 112 (219)
-.+|+- .-+.+|...+.|++.-+
T Consensus 188 ~~nG~v~nk~Gt~~~a~~Ak~~~vPv~v~~ 217 (282)
T PF01008_consen 188 LANGGVVNKVGTLQLALAAKEFNVPVYVLA 217 (282)
T ss_dssp ETTS-EEEETTHHHHHHHHHHTT-EEEEE-
T ss_pred ecCCCEeehhhHHHHHHHHHhhCCCEEEEc
Confidence 555421 23455666666655333
No 453
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=26.74 E-value=2.3e+02 Score=23.20 Aligned_cols=79 Identities=22% Similarity=0.190 Sum_probs=38.7
Q ss_pred HHHHHHhhhhcCCCcEEEEEEecCcch-HHHHHHHHhCCCC-EEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccc
Q psy9408 11 IESAIRLRESSNKIKEIIAISCGNKKC-KEILQIAMAMGVD-RAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQS 88 (219)
Q Consensus 11 le~A~~l~e~~g~g~~V~av~~G~~~~-~~~lr~~~a~GaD-~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s 88 (219)
.+.+.+|.+. + ..++.+|+++. ++...+.+.-+.. .++.+.. ..+-. .++.+++ ..|+++++.+.
T Consensus 127 ~~l~~~l~~~---~--~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~----e~~ali~--~a~~~I~~Dtg 193 (247)
T PF01075_consen 127 AELIERLKER---G--YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAG--KTSLR----ELAALIS--RADLVIGNDTG 193 (247)
T ss_dssp HHHHHHHCCC---T---EEEE--SSHHHHHHHHHHHHTTHTTTTEEETT--TS-HH----HHHHHHH--TSSEEEEESSH
T ss_pred HHHHHHHHhh---C--ceEEEEccchHHHHHHHHHHHHhcccceEeecC--CCCHH----HHHHHHh--cCCEEEecCCh
Confidence 3455566553 2 34455565543 2233333343432 3444432 22333 2444554 57899987764
Q ss_pred cCCCcCcHHHHHHHHcCCCccc
Q psy9408 89 IDSDNNQTGQMLAALLNWPQAT 110 (219)
Q Consensus 89 ~d~~~~~v~~~lA~~Lg~p~vt 110 (219)
+..||..+|.|.++
T Consensus 194 --------~~HlA~a~~~p~v~ 207 (247)
T PF01075_consen 194 --------PMHLAAALGTPTVA 207 (247)
T ss_dssp --------HHHHHHHTT--EEE
T ss_pred --------HHHHHHHHhCCEEE
Confidence 67999999999763
No 454
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=26.68 E-value=98 Score=29.41 Aligned_cols=49 Identities=20% Similarity=0.207 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccc
Q psy9408 62 QSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATF 111 (219)
Q Consensus 62 d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~ 111 (219)
++..+. .+++.+.+-+-=+|++|......+..+.--+||+++|+|+++.
T Consensus 190 ~~~~i~-~~~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~~pV~tt 238 (557)
T PRK08199 190 GAADLA-RLAELLARAERPLVILGGSGWTEAAVADLRAFAERWGLPVACA 238 (557)
T ss_pred CHHHHH-HHHHHHHhCCCCEEEECCCcCchhHHHHHHHHHHHhCCCEEEc
Confidence 444444 4455565545557778876543344567789999999999974
No 455
>KOG0023|consensus
Probab=26.60 E-value=90 Score=28.29 Aligned_cols=35 Identities=23% Similarity=0.287 Sum_probs=22.8
Q ss_pred HHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEE
Q psy9408 13 SAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRA 52 (219)
Q Consensus 13 ~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v 52 (219)
.|.+++.++ |.+|++++-|...-++.++. +|||.=
T Consensus 196 ~aVq~AKAM--G~rV~vis~~~~kkeea~~~---LGAd~f 230 (360)
T KOG0023|consen 196 MAVQYAKAM--GMRVTVISTSSKKKEEAIKS---LGADVF 230 (360)
T ss_pred HHHHHHHHh--CcEEEEEeCCchhHHHHHHh---cCccee
Confidence 467777777 47888888876444444443 588753
No 456
>PRK03482 phosphoglycerate mutase; Provisional
Probab=26.58 E-value=79 Score=25.82 Aligned_cols=44 Identities=11% Similarity=0.024 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 63 SLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 63 ~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
...-|..+++.+++.++|.|+++... .+.|.+-.++..++.|+.
T Consensus 32 G~~qA~~~~~~l~~~~~~~I~sSpl~---Ra~qTA~~i~~~~~~~~~ 75 (215)
T PRK03482 32 GEQQAMQVAERAKELGITHIISSDLG---RTRRTAEIIAQACGCDII 75 (215)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCcH---HHHHHHHHHHHhcCCCee
Confidence 34567778888887789999987776 457788888888887743
No 457
>TIGR02709 branched_ptb branched-chain phosphotransacylase. This model distinguishes branched-chain phosphotransacylases like that of Enterococcus faecalis from closely related subfamilies of phosphate butyryltransferase (EC 2.3.1.19) (TIGR02706) and phosphate acetyltransferase (EC 2.3.1.8) (TIGR00651). Members of this family and of TIGR02706 show considerable crossreactivity, and the occurrence of a member of either family near an apparent leucine dehydrogenase will suggest activity on branched chain-acyl-CoA compounds.
Probab=26.53 E-value=4.4e+02 Score=23.04 Aligned_cols=97 Identities=11% Similarity=0.077 Sum_probs=57.6
Q ss_pred CCHhhHHHHHHHHHhhhhcCCCc-EEEEEEecCcchHHHHHHHHhCCCCEE--EEEecCCCCCHHHHHHHHHHHHHhcCC
Q psy9408 3 INPFDEIAIESAIRLRESSNKIK-EIIAISCGNKKCKEILQIAMAMGVDRA--ILIETDTILQSLSVAKLLQVIVKKENP 79 (219)
Q Consensus 3 iNp~D~~Ale~A~~l~e~~g~g~-~V~av~~G~~~~~~~lr~~~a~GaD~v--~~v~~~~~~d~~~~A~~la~~ik~~~~ 79 (219)
..+.|++.|++..+-.++ |. -+..+.+|+.. |.|.- +-+-+ ..|+..-|+.-..+++..+.
T Consensus 6 a~a~d~~~l~av~~a~~~---g~~~~~~ilvg~~~-----------~~~~~~~~~ii~--~~~~~~aa~~av~lv~~G~a 69 (271)
T TIGR02709 6 AGGSQPEILQLVKKALKE---AEQPLQFIVFDTNE-----------NLDTENLWKYVH--CSDEAAVAQEAVSLVATGQA 69 (271)
T ss_pred EecCCHHHHHHHHHHHHc---CCceeEEEEEcCcc-----------cCCcccCeeEEE--CCChHHHHHHHHHHHHCCCC
Confidence 346789999877666654 22 36788889731 33311 11111 23555566666778888899
Q ss_pred CEEEEcccccCCCcCcHHHHHHHHcC---CCcccceeEEEEe
Q psy9408 80 QLVILGKQSIDSDNNQTGQMLAALLN---WPQATFASKIVLK 118 (219)
Q Consensus 80 dlVl~G~~s~d~~~~~v~~~lA~~Lg---~p~vt~v~~l~~~ 118 (219)
|.++.|.-.++ .-+-+.+-...| -+.+|.+.=++..
T Consensus 70 D~lmkG~i~T~---~~lravl~~~~gl~~~~~~S~v~i~~~p 108 (271)
T TIGR02709 70 QILLKGIIQTH---TLLKEMLKSEHQLKNKPILSHVAMVELP 108 (271)
T ss_pred CEEEcCCcCcH---HHHHHHHHHHcCCCCCCeeEEEEEEEec
Confidence 99999997643 223344433334 3466666555553
No 458
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=26.50 E-value=4.8e+02 Score=23.46 Aligned_cols=68 Identities=22% Similarity=0.237 Sum_probs=42.8
Q ss_pred HHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHH-HcCCCc
Q psy9408 38 KEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAA-LLNWPQ 108 (219)
Q Consensus 38 ~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~-~Lg~p~ 108 (219)
.+..+.+..+|+|++.+.+.-....|..+++.+..+.+..+..+ |-..-+..+-.++-.+|+ ..|+-+
T Consensus 145 ~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~v~l---~~H~HNd~GlA~ANalaA~~aGa~~ 213 (365)
T TIGR02660 145 VELAEVAAEAGADRFRFADTVGILDPFSTYELVRALRQAVDLPL---EMHAHNDLGMATANTLAAVRAGATH 213 (365)
T ss_pred HHHHHHHHHcCcCEEEEcccCCCCCHHHHHHHHHHHHHhcCCeE---EEEecCCCChHHHHHHHHHHhCCCE
Confidence 44567788899998777664446799999999988876654333 333333334446655544 444443
No 459
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=26.43 E-value=4e+02 Score=23.43 Aligned_cols=24 Identities=33% Similarity=0.279 Sum_probs=17.0
Q ss_pred CCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 78 NPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 78 ~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
..|+++...+ =+..||+.+|.|.|
T Consensus 251 ~a~l~I~~DS--------g~~HlAaA~~~P~I 274 (334)
T COG0859 251 GADLVIGNDS--------GPMHLAAALGTPTI 274 (334)
T ss_pred cCCEEEccCC--------hHHHHHHHcCCCEE
Confidence 4577665444 36688999999877
No 460
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=26.43 E-value=3.3e+02 Score=21.58 Aligned_cols=38 Identities=11% Similarity=0.052 Sum_probs=30.3
Q ss_pred HHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 70 LQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 70 la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
+.+.|++.+||+|++|..+.-. -.+..+...+++.+++
T Consensus 91 i~~~I~~~~pdiv~vglG~PkQ--E~~~~~~~~~l~~~v~ 128 (171)
T cd06533 91 IIERINASGADILFVGLGAPKQ--ELWIARHKDRLPVPVA 128 (171)
T ss_pred HHHHHHHcCCCEEEEECCCCHH--HHHHHHHHHHCCCCEE
Confidence 7788888999999999987642 3678888888877655
No 461
>TIGR01835 HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade. This clade of hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found in a limited spectrum of mostly gram-positive bacteria which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway. This pathway is found primarily in eukaryotes and archaea, but the bacterial homologs are distinct, having aparrently diverged after being laterally transferred from an early eukaryote. HMG-CoA synthase is the first step in the pathway and joins acetyl-CoA with acetoacetyl-CoA with the release of one molecule of CoA. The Borellia sequence may have resulted from a separate lateral transfer event.
Probab=26.41 E-value=1.2e+02 Score=27.33 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=24.7
Q ss_pred CCCEEEEcccccCCCcCcHHHHHHHHcCCCc
Q psy9408 78 NPQLVILGKQSIDSDNNQTGQMLAALLNWPQ 108 (219)
Q Consensus 78 ~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~ 108 (219)
+.|+|++|.++.+......+..++..||++-
T Consensus 68 ~Id~li~~t~s~~~~~~s~a~~v~~~Lgl~~ 98 (379)
T TIGR01835 68 KIDMVIFGTESGIDQSKAAAVYVHGLLGLQP 98 (379)
T ss_pred hCCEEEEEeCCCCCCCCCHHHHHHHHhCCCC
Confidence 5688888888877555788999999999763
No 462
>PRK08611 pyruvate oxidase; Provisional
Probab=26.39 E-value=97 Score=29.66 Aligned_cols=48 Identities=10% Similarity=0.135 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccce
Q psy9408 62 QSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFA 112 (219)
Q Consensus 62 d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v 112 (219)
++..+.++ ++.+++-+-=+|++|.... ..++.--.+|++||+|+++.-
T Consensus 189 ~~~~i~~~-~~~L~~AkrPvil~G~g~~--~a~~~l~~lae~~~~PV~tt~ 236 (576)
T PRK08611 189 KPKDIKKA-AKLINKAKKPVILAGLGAK--HAKEELLAFAEKAKIPIIHTL 236 (576)
T ss_pred CHHHHHHH-HHHHHcCCCcEEEECcCcc--hHHHHHHHHHHHhCCCEEEcc
Confidence 45555444 4455543334888888664 234566889999999999753
No 463
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=26.37 E-value=4.7e+02 Score=23.32 Aligned_cols=63 Identities=14% Similarity=0.137 Sum_probs=45.0
Q ss_pred EEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHh-cCCCEEEEcccccCCC
Q psy9408 28 IAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKK-ENPQLVILGKQSIDSD 92 (219)
Q Consensus 28 ~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~-~~~dlVl~G~~s~d~~ 92 (219)
++=+||...---++..+++-|+|-+++=+ ..++.+...+.+.+..++ .++-+|++.....+.+
T Consensus 166 ivEvMGR~~G~LAl~~ala~~a~~iliPE--~~~~~~~l~~~v~~~~~~g~~~~vvvvsEG~~~~~ 229 (324)
T TIGR02483 166 VVEVMGRHAGWIALHSGIAGGADVILIPE--IPFDIDSVCEKVRERFARGKRFAIVVVAEGAKPKG 229 (324)
T ss_pred EEEEcCCChhHHHHHHHhccCCCEEEecC--CCCCHHHHHHHHHHHHHhCCCceEEEEecCccccc
Confidence 44578865434457888999999888744 357888787878777776 5688999887765433
No 464
>PRK12435 ferrochelatase; Provisional
Probab=26.35 E-value=3.8e+02 Score=23.68 Aligned_cols=30 Identities=13% Similarity=0.153 Sum_probs=26.1
Q ss_pred EEEEecCcchHHHHHHHHhCCCCEEEEEec
Q psy9408 28 IAISCGNKKCKEILQIAMAMGVDRAILIET 57 (219)
Q Consensus 28 ~av~~G~~~~~~~lr~~~a~GaD~v~~v~~ 57 (219)
.|.--|++..++.++++.+.|+++++++.-
T Consensus 83 ~amry~~P~i~~~l~~l~~~g~~~iv~lpL 112 (311)
T PRK12435 83 LGLKHIEPFIEDAVEQMHNDGIEEAISIVL 112 (311)
T ss_pred EEecCCCCCHHHHHHHHHHcCCCeEEEEEC
Confidence 456668888999999999999999999983
No 465
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=26.34 E-value=4.7e+02 Score=23.30 Aligned_cols=55 Identities=15% Similarity=0.233 Sum_probs=32.5
Q ss_pred EEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEc
Q psy9408 30 ISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILG 85 (219)
Q Consensus 30 v~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G 85 (219)
+.+|+...++....+..+|.++++++.+...++ ..+.+.+.+.+++.+.+.+++.
T Consensus 4 i~~G~g~l~~l~~~l~~~~~~~~lvv~~~~~~~-~~~~~~v~~~L~~~~~~~~~~~ 58 (370)
T cd08551 4 IIFGAGAIEKLGEEIKNLGGRKALIVTDPGLVK-TGVLDKVIDSLKEAGIEVVIFD 58 (370)
T ss_pred EEECcCHHHHHHHHHHHcCCCeEEEEeCcchhh-CccHHHHHHHHHHcCCeEEEEC
Confidence 456766555555556667778888877543222 2444555556666666666554
No 466
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=26.32 E-value=2.1e+02 Score=26.07 Aligned_cols=76 Identities=16% Similarity=0.202 Sum_probs=45.5
Q ss_pred chHHHHHHHHhCCCCEEEEEecCC-CCCH-HHHHHHH---------------HHHHHhcCCCEEEEcccccCCCcCcH--
Q psy9408 36 KCKEILQIAMAMGVDRAILIETDT-ILQS-LSVAKLL---------------QVIVKKENPQLVILGKQSIDSDNNQT-- 96 (219)
Q Consensus 36 ~~~~~lr~~~a~GaD~v~~v~~~~-~~d~-~~~A~~l---------------a~~ik~~~~dlVl~G~~s~d~~~~~v-- 96 (219)
-+...++.+...|-...+.+...+ .+.. ..+|..| +.++++...|.|++|...+-.+|+-+
T Consensus 179 Tal~vi~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsav~~~M~~~~Vd~VivGAd~I~~nG~v~NK 258 (356)
T PRK08334 179 TVGAVLRVMHKDGTLKLLWVDETRPVLQGARLSAWEYHYDGIPLKLISDNMAGFVMQQGKVDAIIVGADRIVANGDFANK 258 (356)
T ss_pred hHHHHHHHHHHcCCeEEEEECCCCchhhHHHHHHHHHHHCCCCEEEEehhHHHHHhhhcCCCEEEECccEEecCCCEeeh
Confidence 356778888888865444433112 2222 1223333 33455557899999988876654322
Q ss_pred -----HHHHHHHcCCCcccc
Q psy9408 97 -----GQMLAALLNWPQATF 111 (219)
Q Consensus 97 -----~~~lA~~Lg~p~vt~ 111 (219)
-+.+|...|.|++--
T Consensus 259 iGTy~lA~~Ak~~~vPfyV~ 278 (356)
T PRK08334 259 IGTYTLAVLAKEHGIPFFTV 278 (356)
T ss_pred hhHHHHHHHHHHhCCCEEEE
Confidence 267888899997743
No 467
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=26.30 E-value=1.1e+02 Score=28.02 Aligned_cols=95 Identities=17% Similarity=0.080 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCC--CC----CHHHHHHHHHHHHHhcCC
Q psy9408 6 FDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDT--IL----QSLSVAKLLQVIVKKENP 79 (219)
Q Consensus 6 ~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~--~~----d~~~~A~~la~~ik~~~~ 79 (219)
+-....+.+..|++. |.+|+.++..+...++ -.|.. ++.+..-. .+ -.......+.+.+++.+|
T Consensus 76 ~~~~~~~l~~~L~~~---G~eV~vlt~~~~~~~~------~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~kp 145 (465)
T PLN02871 76 YKNRFQNFIRYLREM---GDEVLVVTTDEGVPQE------FHGAK-VIGSWSFPCPFYQKVPLSLALSPRIISEVARFKP 145 (465)
T ss_pred HHHHHHHHHHHHHHC---CCeEEEEecCCCCCcc------ccCce-eeccCCcCCccCCCceeeccCCHHHHHHHHhCCC
Confidence 345667777788764 4788888866532111 12322 22111100 00 011122256678888999
Q ss_pred CEEEEcccccCCCcCcHHHHHHHHcCCCccccee
Q psy9408 80 QLVILGKQSIDSDNNQTGQMLAALLNWPQATFAS 113 (219)
Q Consensus 80 dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~ 113 (219)
|+|.+.... ...-.+..+|..+++|++...-
T Consensus 146 DiIh~~~~~---~~~~~~~~~ak~~~ip~V~~~h 176 (465)
T PLN02871 146 DLIHASSPG---IMVFGALFYAKLLCVPLVMSYH 176 (465)
T ss_pred CEEEECCCc---hhHHHHHHHHHHhCCCEEEEEe
Confidence 999885421 1122344567788999886443
No 468
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=26.27 E-value=2e+02 Score=21.73 Aligned_cols=61 Identities=13% Similarity=-0.003 Sum_probs=34.1
Q ss_pred HHHH-HHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcC
Q psy9408 40 ILQI-AMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLN 105 (219)
Q Consensus 40 ~lr~-~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg 105 (219)
.++. +..+|.+-.+...- .-|++...+.|.+++++ +|+|++...+.-+. .++.+..-+.++
T Consensus 23 ~l~~~l~~~G~~v~~~~~v--~Dd~~~i~~~i~~~~~~--~DlvittGG~g~g~-~D~t~~ai~~~g 84 (133)
T cd00758 23 ALEALLEDLGCEVIYAGVV--PDDADSIRAALIEASRE--ADLVLTTGGTGVGR-RDVTPEALAELG 84 (133)
T ss_pred HHHHHHHHCCCEEEEeeec--CCCHHHHHHHHHHHHhc--CCEEEECCCCCCCC-CcchHHHHHHhc
Confidence 3444 55578664332111 23677788888888764 88877654443333 344444444444
No 469
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=26.23 E-value=4.7e+02 Score=23.26 Aligned_cols=21 Identities=14% Similarity=0.504 Sum_probs=16.5
Q ss_pred HHHHHHHHhcCCCEEEEcccc
Q psy9408 68 KLLQVIVKKENPQLVILGKQS 88 (219)
Q Consensus 68 ~~la~~ik~~~~dlVl~G~~s 88 (219)
..|.+++++.++|+|+.+...
T Consensus 65 ~~l~~~~~~~~id~vi~~~e~ 85 (395)
T PRK09288 65 DALRAVIEREKPDYIVPEIEA 85 (395)
T ss_pred HHHHHHHHHhCCCEEEEeeCc
Confidence 457777888899999987664
No 470
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=26.14 E-value=2.2e+02 Score=23.12 Aligned_cols=52 Identities=17% Similarity=-0.001 Sum_probs=33.8
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCccccee
Q psy9408 58 DTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFAS 113 (219)
Q Consensus 58 ~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~ 113 (219)
+...++.....++.+++++ +++.|+.+..+. ........+...++|+++...
T Consensus 47 d~~~~~~~~~~~~~~l~~~-~v~~iig~~~~~---~~~~~~~~~~~~~ip~i~~~~ 98 (298)
T cd06268 47 DTQGDPEAAAAAARELVDD-GVDAVIGPLSSG---VALAAAPVAEEAGVPLISPGA 98 (298)
T ss_pred cCCCCHHHHHHHHHHHHhC-CceEEEcCCcch---hHHhhHHHHHhCCCcEEccCC
Confidence 3356777777777777764 788887554432 122344677788999887544
No 471
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=26.07 E-value=6.1e+02 Score=24.57 Aligned_cols=98 Identities=16% Similarity=0.090 Sum_probs=55.7
Q ss_pred CCCHhhHHHHHHHHHhhhh-cCCCcEEEEEEecCcc---------------hHHHHHH-HHhCCCCEEEEEecCCCCCHH
Q psy9408 2 SINPFDEIAIESAIRLRES-SNKIKEIIAISCGNKK---------------CKEILQI-AMAMGVDRAILIETDTILQSL 64 (219)
Q Consensus 2 ~iNp~D~~Ale~A~~l~e~-~g~g~~V~av~~G~~~---------------~~~~lr~-~~a~GaD~v~~v~~~~~~d~~ 64 (219)
+|||.+.-+|..+ -+.+- .-.--+|..++.|.+- ....++. +..+|++-...--- .-|.+
T Consensus 164 ~i~p~~i~~las~-g~~~v~v~~~prv~vi~tG~El~~~~~~~~~g~i~dsn~~~l~~~l~~~g~~~~~~~~v--~Dd~~ 240 (633)
T PRK14498 164 RLTPRDIGALAAG-GVAEVPVYKKPRVGIISTGDELVEPGEPLKPGKIYDVNSYTLAAAVEEAGGEPVRYGIV--PDDEE 240 (633)
T ss_pred CCCHHHHHHHHHC-CCCEEEEecCcEEEEEecCccccCCCCCCCCCEEEEChHHHHHHHHHHCCCEEEEEEEe--CCCHH
Confidence 5788888777433 21110 0001267788888541 1224444 55688865443111 23566
Q ss_pred HHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcC
Q psy9408 65 SVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLN 105 (219)
Q Consensus 65 ~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg 105 (219)
.+.++|.++++ ++|+|++...++-+ ..++.+.+-..+|
T Consensus 241 ~i~~~l~~~~~--~~D~iIttGG~s~g-~~D~~~~~l~~~g 278 (633)
T PRK14498 241 ELEAALRKALK--ECDLVLLSGGTSAG-AGDVTYRVIEELG 278 (633)
T ss_pred HHHHHHHHHHh--cCCEEEECCCCcCC-CcccHHHHHHhcC
Confidence 77788877764 68987765554333 3567777777777
No 472
>cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes. They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues.
Probab=26.06 E-value=1.7e+02 Score=25.08 Aligned_cols=45 Identities=16% Similarity=0.201 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhc-----CCCEEEEcccccCCCcCcHHHHHHHHcCCC
Q psy9408 63 SLSVAKLLQVIVKKE-----NPQLVILGKQSIDSDNNQTGQMLAALLNWP 107 (219)
Q Consensus 63 ~~~~A~~la~~ik~~-----~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p 107 (219)
.+-.+.++.+++++. +.|.|++|.++.+......+.+++..||.+
T Consensus 49 ~~l~~~a~~~aL~~ag~~~~~Id~li~~~~~~~~~~~~~~~~i~~~lg~~ 98 (324)
T cd00827 49 PTMAVEAARRALERAGIDPDDIGLLIVATESPIDKGKSAATYLAELLGLT 98 (324)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCccHHHHHHHHcCCC
Confidence 444455555666553 468999998876655667899999999986
No 473
>KOG0745|consensus
Probab=25.98 E-value=55 Score=30.98 Aligned_cols=37 Identities=19% Similarity=0.317 Sum_probs=30.5
Q ss_pred CCCEEEEcccccCCCcCcHHHHHHHHcCCC-cccceeEEE
Q psy9408 78 NPQLVILGKQSIDSDNNQTGQMLAALLNWP-QATFASKIV 116 (219)
Q Consensus 78 ~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p-~vt~v~~l~ 116 (219)
+-+++|+|-+-++. --++.-||..|+.| .|+||+.+.
T Consensus 226 KSNvLllGPtGsGK--TllaqTLAr~ldVPfaIcDcTtLT 263 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGK--TLLAQTLARVLDVPFAICDCTTLT 263 (564)
T ss_pred cccEEEECCCCCch--hHHHHHHHHHhCCCeEEecccchh
Confidence 35799999987665 36888999999999 678998885
No 474
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=25.93 E-value=2.4e+02 Score=25.20 Aligned_cols=36 Identities=28% Similarity=0.324 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhcCCCEEE-EcccccCCCcCcHHHHHHHH
Q psy9408 64 LSVAKLLQVIVKKENPQLVI-LGKQSIDSDNNQTGQMLAAL 103 (219)
Q Consensus 64 ~~~A~~la~~ik~~~~dlVl-~G~~s~d~~~~~v~~~lA~~ 103 (219)
......+++.+++.++|.|+ +|..|. -+++-.+|..
T Consensus 63 ~~~v~~~~~~~~~~~~D~IIavGGGs~----~D~aK~ia~~ 99 (367)
T cd08182 63 LEDLAAGIRLLREFGPDAVLAVGGGSV----LDTAKALAAL 99 (367)
T ss_pred HHHHHHHHHHHHhcCcCEEEEeCCcHH----HHHHHHHHHH
Confidence 44556677788888999988 665443 2355555554
No 475
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=25.91 E-value=5.5e+02 Score=24.32 Aligned_cols=45 Identities=20% Similarity=0.205 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEE
Q psy9408 6 FDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAIL 54 (219)
Q Consensus 6 ~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~ 54 (219)
...++++.-.+|++.+. +..|.| |.-...+..+.+...|||-+.+
T Consensus 265 ~s~~~~~~i~~ik~~~~-~~~v~a---G~V~t~~~a~~~~~aGad~I~v 309 (495)
T PTZ00314 265 NSIYQIDMIKKLKSNYP-HVDIIA---GNVVTADQAKNLIDAGADGLRI 309 (495)
T ss_pred CchHHHHHHHHHHhhCC-CceEEE---CCcCCHHHHHHHHHcCCCEEEE
Confidence 44556667777777642 223333 5544456778888888886543
No 476
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=25.89 E-value=1.4e+02 Score=25.92 Aligned_cols=49 Identities=16% Similarity=0.251 Sum_probs=26.7
Q ss_pred HHHHHHhCCCCEEEEEecCC-CCC--H---HHHHHHHHHHHHh--cCCCEEEEcccc
Q psy9408 40 ILQIAMAMGVDRAILIETDT-ILQ--S---LSVAKLLQVIVKK--ENPQLVILGKQS 88 (219)
Q Consensus 40 ~lr~~~a~GaD~v~~v~~~~-~~d--~---~~~A~~la~~ik~--~~~dlVl~G~~s 88 (219)
.++++-+.|+|-+|++.+-. ..+ + .....-..+++.+ .+.|+||.|++=
T Consensus 183 ~v~~lr~~~~D~IIvL~H~G~~~~~~~~~~~~~~~~~~~l~~~~~~~iD~IlgGHsH 239 (288)
T cd07412 183 VAPELKAGGVDAIVVLAHEGGSTKGGDDTCSAASGPIADIVNRLDPDVDVVFAGHTH 239 (288)
T ss_pred HHHHHHHCCCCEEEEEeCCCCCCCCCCccccccChhHHHHHhhcCCCCCEEEeCccC
Confidence 34455557899999988643 111 0 0000112233333 268999999874
No 477
>PLN02199 shikimate kinase
Probab=25.87 E-value=80 Score=28.10 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHHhc--CCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 61 LQSLSVAKLLQVIVKKE--NPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 61 ~d~~~~A~~la~~ik~~--~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
+|.+ .-+..++.++.. +..++|+|....|+ -.|+-.||..||+|++
T Consensus 84 ~de~-~Lk~~a~~i~~~l~~~~I~LIG~~GSGK--STVgr~LA~~Lg~~fI 131 (303)
T PLN02199 84 FDED-ILKRKAEEVKPYLNGRSMYLVGMMGSGK--TTVGKLMSKVLGYTFF 131 (303)
T ss_pred CCHH-HHHHHHHHHHHHcCCCEEEEECCCCCCH--HHHHHHHHHHhCCCEE
Confidence 3444 233344444443 46799999987765 3699999999999987
No 478
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=25.86 E-value=2e+02 Score=26.02 Aligned_cols=25 Identities=28% Similarity=0.202 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhcCCCEEE-Ecccc
Q psy9408 64 LSVAKLLQVIVKKENPQLVI-LGKQS 88 (219)
Q Consensus 64 ~~~A~~la~~ik~~~~dlVl-~G~~s 88 (219)
.......++.+++.++|.|+ +|..|
T Consensus 74 ~~~v~~~~~~~~~~~~D~IiaiGGGS 99 (383)
T PRK09860 74 TENVAAGLKLLKENNCDSVISLGGGS 99 (383)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCch
Confidence 44456677788889999998 66644
No 479
>PRK15452 putative protease; Provisional
Probab=25.84 E-value=4.9e+02 Score=24.33 Aligned_cols=100 Identities=17% Similarity=0.177 Sum_probs=57.2
Q ss_pred CHhhHHHHHHHHHhhhhcCCCcEEEEE---EecCcc---hHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhc
Q psy9408 4 NPFDEIAIESAIRLRESSNKIKEIIAI---SCGNKK---CKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKE 77 (219)
Q Consensus 4 Np~D~~Ale~A~~l~e~~g~g~~V~av---~~G~~~---~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~ 77 (219)
++|+.+-|+++++++.+. |.+|.+. .+-..+ ..+.++.+...|+|.+++-+ --+..++++.
T Consensus 41 ~~f~~edl~eav~~ah~~--g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gvDgvIV~d-----------~G~l~~~ke~ 107 (443)
T PRK15452 41 NEFNHENLALGINEAHAL--GKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKPDALIMSD-----------PGLIMMVREH 107 (443)
T ss_pred cCCCHHHHHHHHHHHHHc--CCEEEEEecCcCCHHHHHHHHHHHHHHHhCCCCEEEEcC-----------HHHHHHHHHh
Confidence 356666788888888775 3566543 222211 22346667788888766533 2334566666
Q ss_pred CCCEEEEcccccCCCcCcHHHHHHHHcCCCcccceeEEEE
Q psy9408 78 NPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIVL 117 (219)
Q Consensus 78 ~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~ 117 (219)
.|++-+-+.+...- ....+.+.-..+|+--++-..++.+
T Consensus 108 ~p~l~ih~stqlni-~N~~a~~f~~~lG~~rvvLSrELsl 146 (443)
T PRK15452 108 FPEMPIHLSVQANA-VNWATVKFWQQMGLTRVILSRELSL 146 (443)
T ss_pred CCCCeEEEEecccC-CCHHHHHHHHHCCCcEEEECCcCCH
Confidence 67777766665442 3445555555667655555555543
No 480
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=25.82 E-value=4.5e+02 Score=22.91 Aligned_cols=94 Identities=16% Similarity=0.038 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEecCc---chHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEE-Ec
Q psy9408 10 AIESAIRLRESSNKIKEIIAISCGNK---KCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVI-LG 85 (219)
Q Consensus 10 Ale~A~~l~e~~g~g~~V~av~~G~~---~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl-~G 85 (219)
+++.--+.-... +.+=..++.|+. ...+.+.+.+... -.+........--+......+.+.+++.++|.|+ +|
T Consensus 10 ~l~~l~~~~~~~--g~~~~liv~~~~~~~~~~~~v~~~l~~~-~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiG 86 (332)
T cd07766 10 AIEKIGEEIKRG--GFDRALVVSDEGVVKGVGEKVADSLKKL-IAVHIFDGVGPNPTFEEVKEAVERARAAEVDAVIAVG 86 (332)
T ss_pred HHHHHHHHHHhc--CCCeEEEEeCCchhhhHHHHHHHHHHhc-CcEEEeCCcCCCcCHHHHHHHHHHHHhcCcCEEEEeC
Q ss_pred ccccCCCcCcHHHHHHHHc--CCCccc
Q psy9408 86 KQSIDSDNNQTGQMLAALL--NWPQAT 110 (219)
Q Consensus 86 ~~s~d~~~~~v~~~lA~~L--g~p~vt 110 (219)
..|. -+++-.+|..+ +.|++.
T Consensus 87 GGs~----~D~aK~ia~~~~~~~p~i~ 109 (332)
T cd07766 87 GGST----LDTAKAVAALLNRGLPIII 109 (332)
T ss_pred CchH----HHHHHHHHHHhcCCCCEEE
No 481
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=25.77 E-value=3.4e+02 Score=21.46 Aligned_cols=81 Identities=19% Similarity=0.191 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhhhcCCCcEEEEEEecCc----c---hHHHHHHHHhCCCCEEEEEecC---CCCCHHHHHH-----HHHH
Q psy9408 8 EIAIESAIRLRESSNKIKEIIAISCGNK----K---CKEILQIAMAMGVDRAILIETD---TILQSLSVAK-----LLQV 72 (219)
Q Consensus 8 ~~Ale~A~~l~e~~g~g~~V~av~~G~~----~---~~~~lr~~~a~GaD~v~~v~~~---~~~d~~~~A~-----~la~ 72 (219)
..+|....+++... +.++.++.+... + ++...+-+-.+|.+-.+.-.+. .....+..|+ .|.+
T Consensus 13 ~~Ll~~l~~~~~~~--~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~ 90 (182)
T PF01171_consen 13 MALLHLLKELRRRN--GIKLIAVHVDHGLREESDEEAEFVEEICEQLGIPLYIVRIDEDRKKGSNIEECARELRYQFLRE 90 (182)
T ss_dssp HHHHHHHHHHHTTT--TTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEEEEE--CHCCTTSTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCeEEEEEecCCCcccchhHHHHHHHHHhcCCceEEEEeeeeecccCCHHHHHHHHHHHHHHH
Confidence 34555566666654 458888887632 1 2224455777888766654432 1345555665 5667
Q ss_pred HHHhcCCCEEEEcccccC
Q psy9408 73 IVKKENPQLVILGKQSID 90 (219)
Q Consensus 73 ~ik~~~~dlVl~G~~s~d 90 (219)
++++.+.+.|++|++..|
T Consensus 91 ~a~~~g~~~i~~GHh~dD 108 (182)
T PF01171_consen 91 IAKEEGCNKIALGHHLDD 108 (182)
T ss_dssp HHHTTT-CEEE---BHHH
T ss_pred hhhcccccceeecCcCCc
Confidence 788889999999999876
No 482
>PRK08322 acetolactate synthase; Reviewed
Probab=25.75 E-value=87 Score=29.59 Aligned_cols=52 Identities=8% Similarity=0.073 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccceeE
Q psy9408 62 QSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASK 114 (219)
Q Consensus 62 d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~ 114 (219)
++..+ +.+++.+++-+-=+|++|.........+---.+|++||+|+++.-..
T Consensus 182 ~~~~i-~~~~~~l~~A~rPviv~G~g~~~~~a~~~l~~lae~~~~pv~tt~~g 233 (547)
T PRK08322 182 SPKAI-ERAAEAIQAAKNPLILIGAGANRKTASKALTEFVDKTGIPFFTTQMG 233 (547)
T ss_pred CHHHH-HHHHHHHHhCCCcEEEECCCcchhcHHHHHHHHHHHhCCCEEEcccc
Confidence 44444 33445555545457888876654344566689999999999975444
No 483
>PRK05805 phosphate butyryltransferase; Validated
Probab=25.73 E-value=4.6e+02 Score=23.01 Aligned_cols=75 Identities=20% Similarity=0.202 Sum_probs=44.5
Q ss_pred CHhhHHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHH-HHhCCC--CEEEEEecCCCCCHHHHHHHHHHHHHhcCCC
Q psy9408 4 NPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQI-AMAMGV--DRAILIETDTILQSLSVAKLLQVIVKKENPQ 80 (219)
Q Consensus 4 Np~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~-~~a~Ga--D~v~~v~~~~~~d~~~~A~~la~~ik~~~~d 80 (219)
.+.|+..|+++.++.+. + .+..+.+|++ +.++. +-.+|. +++-.+. ... .......=.+++++.+.|
T Consensus 24 ~~~d~~vl~Aa~~~~~~-~---~~~~iLVGd~---~~I~~~l~~~~l~~~~ieIi~-a~d--~i~a~~~A~~lVk~GeAD 93 (301)
T PRK05805 24 VAQDEPVLEAVKEAKEL-G---IANAILVGDK---EKIKEIAKEIDMDLEDFEIID-EKD--NRKAALKAVELVSSGKAD 93 (301)
T ss_pred CCCCHHHHHHHHHHHHC-C---CceEEEECCH---HHHHHHHHHcCCCccCcEEEC-CCC--cHHHHHHHHHHHHCCCCC
Confidence 45689999999887764 2 4566788975 33444 334454 2222222 211 111113335678888999
Q ss_pred EEEEcccc
Q psy9408 81 LVILGKQS 88 (219)
Q Consensus 81 lVl~G~~s 88 (219)
.+++|...
T Consensus 94 a~v~G~~~ 101 (301)
T PRK05805 94 MVMKGLVD 101 (301)
T ss_pred EEecCccC
Confidence 99999975
No 484
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=25.63 E-value=2.6e+02 Score=25.64 Aligned_cols=40 Identities=13% Similarity=0.052 Sum_probs=22.1
Q ss_pred HHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy9408 44 AMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVIL 84 (219)
Q Consensus 44 ~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~ 84 (219)
+-..|.+-.++ ++-..-.+......+++.+++.++|+|+.
T Consensus 47 L~~~gi~~~~f-~~v~~~p~~~~v~~~~~~~~~~~~D~IIa 86 (414)
T cd08190 47 LEAAGINFEVY-DDVRVEPTDESFKDAIAFAKKGQFDAFVA 86 (414)
T ss_pred HHHcCCcEEEe-CCCCCCcCHHHHHHHHHHHHhcCCCEEEE
Confidence 33567664333 32121223344555667788889998764
No 485
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=25.54 E-value=2.9e+02 Score=26.11 Aligned_cols=20 Identities=30% Similarity=0.634 Sum_probs=16.0
Q ss_pred HHHHHHHhcCCCEEEEcccc
Q psy9408 69 LLQVIVKKENPQLVILGKQS 88 (219)
Q Consensus 69 ~la~~ik~~~~dlVl~G~~s 88 (219)
.|.+++++.++|+|+.|.+.
T Consensus 60 ~l~~~a~~~~id~Vi~g~E~ 79 (486)
T PRK05784 60 EVKKVAKEVNPDLVVIGPEE 79 (486)
T ss_pred HHHHHHHHhCCCEEEECCch
Confidence 46777888899999998754
No 486
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=25.47 E-value=3.7e+02 Score=21.87 Aligned_cols=60 Identities=10% Similarity=0.152 Sum_probs=35.5
Q ss_pred cEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcc
Q psy9408 25 KEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGK 86 (219)
Q Consensus 25 ~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~ 86 (219)
.+|.+|.-..+++ ..+..|..+|..-. .++.....+...+...+.+.+++.+||++++-.
T Consensus 28 ~~I~~vi~~~~~~-~~~~~A~~~gip~~-~~~~~~~~~~~~~~~~~~~~l~~~~~D~iv~~~ 87 (190)
T TIGR00639 28 ASVVLVISNKPDA-YGLERAAQAGIPTF-VLSLKDFPSREAFDQAIIEELRAHEVDLVVLAG 87 (190)
T ss_pred ceEEEEEECCccc-hHHHHHHHcCCCEE-EECccccCchhhhhHHHHHHHHhcCCCEEEEeC
Confidence 3555544443333 45677888898843 333221123344456677888888999988643
No 487
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=25.45 E-value=4.1e+02 Score=22.41 Aligned_cols=86 Identities=9% Similarity=0.074 Sum_probs=48.2
Q ss_pred HHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHH-HhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEccc
Q psy9408 9 IAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIA-MAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQ 87 (219)
Q Consensus 9 ~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~-~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~ 87 (219)
..+++..+|+++. ..+..+.+|+....+.+++. ..+|.+.-+..... .. -+.++++ ..|+.++...
T Consensus 209 ~li~a~~~l~~~~---~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~-~~-------~~~~~~~--~adi~v~ps~ 275 (358)
T cd03812 209 FLIEIFAELLKKN---PNAKLLLVGDGELEEEIKKKVKELGLEDKVIFLGV-RN-------DVPELLQ--AMDVFLFPSL 275 (358)
T ss_pred HHHHHHHHHHHhC---CCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEecc-cC-------CHHHHHH--hcCEEEeccc
Confidence 3566677777652 35667777765544444443 35665443333321 11 1233343 4688888765
Q ss_pred ccCCCcCcHHHHHHHHcCCCccc
Q psy9408 88 SIDSDNNQTGQMLAALLNWPQAT 110 (219)
Q Consensus 88 s~d~~~~~v~~~lA~~Lg~p~vt 110 (219)
. ++--+...=|-.+|.|+|+
T Consensus 276 ~---E~~~~~~lEAma~G~PvI~ 295 (358)
T cd03812 276 Y---EGLPLVLIEAQASGLPCIL 295 (358)
T ss_pred c---cCCCHHHHHHHHhCCCEEE
Confidence 4 3344677777788888763
No 488
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=25.45 E-value=3.6e+02 Score=21.64 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=28.4
Q ss_pred HHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCC--CEEEEccc
Q psy9408 38 KEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENP--QLVILGKQ 87 (219)
Q Consensus 38 ~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~--dlVl~G~~ 87 (219)
.+.+.+++..|+|-+-+ + +++++.+.+++..+ +...+ .+.+.|+-
T Consensus 90 ~ee~~ea~~~g~d~I~l-D---~~~~~~~~~~v~~l-~~~~~~v~ie~SGGI 136 (169)
T PF01729_consen 90 LEEAEEALEAGADIIML-D---NMSPEDLKEAVEEL-RELNPRVKIEASGGI 136 (169)
T ss_dssp HHHHHHHHHTT-SEEEE-E---S-CHHHHHHHHHHH-HHHTTTSEEEEESSS
T ss_pred HHHHHHHHHhCCCEEEe-c---CcCHHHHHHHHHHH-hhcCCcEEEEEECCC
Confidence 56688999999996544 4 57888777777765 44444 44444443
No 489
>KOG1200|consensus
Probab=25.42 E-value=3.4e+02 Score=23.14 Aligned_cols=51 Identities=10% Similarity=0.058 Sum_probs=20.9
Q ss_pred cEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcC
Q psy9408 25 KEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKEN 78 (219)
Q Consensus 25 ~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~ 78 (219)
.+|.+.-.-...+++..+.+-.+|-...+-.+ -.++..+...+.+..+..+
T Consensus 39 arv~v~dl~~~~A~ata~~L~g~~~h~aF~~D---VS~a~~v~~~l~e~~k~~g 89 (256)
T KOG1200|consen 39 ARVAVADLDSAAAEATAGDLGGYGDHSAFSCD---VSKAHDVQNTLEEMEKSLG 89 (256)
T ss_pred cEEEEeecchhhHHHHHhhcCCCCccceeeec---cCcHHHHHHHHHHHHHhcC
Confidence 44444444433344444433333322222222 2334444455555555543
No 490
>PLN02573 pyruvate decarboxylase
Probab=25.38 E-value=1.2e+02 Score=29.22 Aligned_cols=47 Identities=15% Similarity=0.111 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccceeE
Q psy9408 68 KLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASK 114 (219)
Q Consensus 68 ~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~ 114 (219)
+.+++.+++-+-=+|++|......+..+---++|++||+|++|.-..
T Consensus 215 ~~a~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~~PV~tt~~g 261 (578)
T PLN02573 215 EAAAEFLNKAVKPVLVGGPKLRVAKACKAFVELADASGYPVAVMPSA 261 (578)
T ss_pred HHHHHHHHhCCCCEEEEChhhcccchHHHHHHHHHHhCCCEEECccc
Confidence 33445555545567788887754455677889999999998865544
No 491
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=25.36 E-value=1.6e+02 Score=24.06 Aligned_cols=57 Identities=18% Similarity=0.297 Sum_probs=38.3
Q ss_pred cEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCC----C------CCH------HHHHHHHHHHHHhcCCCEE
Q psy9408 25 KEIIAISCGNKKCKEILQIAMAMGVDRAILIETDT----I------LQS------LSVAKLLQVIVKKENPQLV 82 (219)
Q Consensus 25 ~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~----~------~d~------~~~A~~la~~ik~~~~dlV 82 (219)
.+|..+-+|+-. -+.++.+...|+.++.++++|. + +.. ..-+.++++.+++..|++-
T Consensus 20 s~VlviG~gglG-sevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~ 92 (198)
T cd01485 20 AKVLIIGAGALG-AEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVK 92 (198)
T ss_pred CcEEEECCCHHH-HHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCE
Confidence 477777777643 5788999999999999999763 1 111 1345566666766666543
No 492
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=25.34 E-value=99 Score=29.58 Aligned_cols=50 Identities=18% Similarity=0.152 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccce
Q psy9408 62 QSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFA 112 (219)
Q Consensus 62 d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v 112 (219)
++..+. .+++.+++-+-=+|++|......+...---++|++||+|+++.-
T Consensus 182 ~~~~i~-~~~~~L~~A~rP~i~~G~g~~~~~a~~~l~~lae~~~~PV~tt~ 231 (579)
T TIGR03457 182 GATSLA-QAARLLAEAKFPVIISGGGVVMGDAVEECKALAERLGAPVVNSY 231 (579)
T ss_pred CHHHHH-HHHHHHHhCCCCEEEECcCccccChHHHHHHHHHHhCCCEEEcc
Confidence 444443 44455555454578888877655556677899999999999643
No 493
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=25.34 E-value=2.1e+02 Score=24.98 Aligned_cols=72 Identities=13% Similarity=0.094 Sum_probs=39.4
Q ss_pred EEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhc--CCCEEEEcccccCCCcCcHHHHHHHHc
Q psy9408 29 AISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKE--NPQLVILGKQSIDSDNNQTGQMLAALL 104 (219)
Q Consensus 29 av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~--~~dlVl~G~~s~d~~~~~v~~~lA~~L 104 (219)
++.+|.....+.++.++..|+.+.+... .+.....++|+.+.... ...+|.+-+..-|-..-.++..||..|
T Consensus 45 v~v~~~~~~~~~~~~a~~~Ga~~~l~~P----~~~~~l~~~l~~~~~~~~~~~~vIav~~~KGGvGkTT~a~nLA~~l 118 (322)
T TIGR03815 45 VLVGGGEPGGALWRAAAAVGAEHVAVLP----EAEGWLVELLADLDQSPPARGVVVAVIGGRGGAGASTLAAALALAA 118 (322)
T ss_pred EEEeCCCCCHHHHHHHHHhChhheeeCC----CCHHHHHHHHHhhccCCCCCceEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 3344544446789999999999877755 23445556666553211 223444333332222233466666655
No 494
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=25.33 E-value=3.1e+02 Score=25.89 Aligned_cols=70 Identities=20% Similarity=0.080 Sum_probs=36.5
Q ss_pred HHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcc
Q psy9408 9 IAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGK 86 (219)
Q Consensus 9 ~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~ 86 (219)
.|+...+.+++ + |.+++++.--+ +. ... . ..-||+.+.+..+...+.+.-...|.+++++.++|.|+.|.
T Consensus 13 ia~~iiraar~-l--Gi~~V~v~s~~-d~-~a~--~-~~~AD~~~~i~~~~~~~syld~~~i~~~a~~~~~daI~pg~ 82 (499)
T PRK08654 13 IAIRVMRACRE-L--GIKTVAVYSEA-DK-NAL--F-VKYADEAYPIGPAPPSKSYLNIERIIDVAKKAGADAIHPGY 82 (499)
T ss_pred HHHHHHHHHHH-c--CCeEEEEeccc-cc-ccc--c-hhhCCEEEEcCCCCcccCccCHHHHHHHHHHhCCCEEEECC
Confidence 35555444444 3 46766664222 11 100 0 11278888876332112222234567778888899888774
No 495
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=25.30 E-value=4e+02 Score=23.81 Aligned_cols=57 Identities=11% Similarity=0.066 Sum_probs=32.7
Q ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCccc
Q psy9408 51 RAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQAT 110 (219)
Q Consensus 51 ~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt 110 (219)
++-++.-|...++........+++.+.+.+.|+.+..|.. +-.+ ..+++..+.|++.
T Consensus 41 ~ielv~~D~~~~p~~a~~~a~~li~~d~v~~viG~~~S~~--~~A~-~~~~~~~~~~~i~ 97 (374)
T TIGR03669 41 QIELIDPDPQSDNERYQELTRRLLNRDKVDALWAGYSSAT--REAI-RPIIDRNEQLYFY 97 (374)
T ss_pred eeEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEcCCchHH--HHHH-HHHHHhcCceEEc
Confidence 3333333445677777777777777677777766655421 1122 2355667777663
No 496
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=25.23 E-value=4.7e+02 Score=25.30 Aligned_cols=98 Identities=11% Similarity=0.024 Sum_probs=55.3
Q ss_pred CCCHhhHHHHHHHHHhhhhc-CCCcEEEEEEecCcch---------------HHHHHH-HHhCCCCEEEEEecCCCCCHH
Q psy9408 2 SINPFDEIAIESAIRLRESS-NKIKEIIAISCGNKKC---------------KEILQI-AMAMGVDRAILIETDTILQSL 64 (219)
Q Consensus 2 ~iNp~D~~Ale~A~~l~e~~-g~g~~V~av~~G~~~~---------------~~~lr~-~~a~GaD~v~~v~~~~~~d~~ 64 (219)
+|||.|.-+|..+ -+.+-. -.--+|..++.|.+-. .-.+.. +..+|++-.. ... -.-|.+
T Consensus 157 ~L~p~~IglLas~-Gi~~V~V~~rprV~IisTGdELv~pg~~l~~G~I~dsNs~~L~a~l~~~G~~v~~-~~i-v~Dd~e 233 (546)
T PRK14497 157 VISHEKIGLLASL-GISSVKVYEKPKIYLIATGDELVEPGNSLSPGKIYESNLHYLYSKLKSEGYKIVG-LSL-LSDDKE 233 (546)
T ss_pred CCCHHHHHHHHhC-CCCEEeeccCCEEEEEEcCCcccCCCCCCCCCcEEEhHHHHHHHHHHHCCCEEEE-EEE-eCCCHH
Confidence 5888888888432 222110 0001567777775311 113444 5558987332 221 023566
Q ss_pred HHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcC
Q psy9408 65 SVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLN 105 (219)
Q Consensus 65 ~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg 105 (219)
.+.++|.++++ +.|+|++...++-+ ..++.+.+-..||
T Consensus 234 ~i~~~l~~al~--~~DlVIttGGtS~G-~~D~~~~al~~lG 271 (546)
T PRK14497 234 SIKNEIKRAIS--VADVLILTGGTSAG-EKDFVHQAIRELG 271 (546)
T ss_pred HHHHHHHHhhh--cCCEEEEcCCccCC-CCccHHHHHhhcC
Confidence 77777777764 58887776555443 3667777778888
No 497
>PRK14072 6-phosphofructokinase; Provisional
Probab=25.19 E-value=4.4e+02 Score=24.44 Aligned_cols=60 Identities=17% Similarity=0.039 Sum_probs=42.9
Q ss_pred EEEEecCcchHHHHHHHHh-----CCCCEEEEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEccccc
Q psy9408 28 IAISCGNKKCKEILQIAMA-----MGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSI 89 (219)
Q Consensus 28 ~av~~G~~~~~~~lr~~~a-----~GaD~v~~v~~~~~~d~~~~A~~la~~ik~~~~dlVl~G~~s~ 89 (219)
++=+||-..--=++..+++ -|+|-+++=+ ..++.+.+.+.|.+..++.++-+|++.....
T Consensus 184 iVEvMGR~aG~LAl~a~lA~~~~~~gad~iliPE--~~~~~~~~~~~i~~~~~~~~~~ivvVaEG~~ 248 (416)
T PRK14072 184 ILEVMGRHAGWLAAAAALAKQNPDDAPHLIYLPE--RPFDEEKFLADVRAIVKRYGYCVVVVSEGIR 248 (416)
T ss_pred EEEEeCcchhHHHHHHhhccccCCCCccEEEccC--CCCCHHHHHHHHHHHHHhCCCeEEEEecCcc
Confidence 4457886432234677888 7888777733 2588888888888888777888999876653
No 498
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=25.19 E-value=2.3e+02 Score=25.78 Aligned_cols=84 Identities=18% Similarity=0.104 Sum_probs=53.9
Q ss_pred cEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCC----C------CCHH----HHHHHHHHHHHhc-------------
Q psy9408 25 KEIIAISCGNKKCKEILQIAMAMGVDRAILIETDT----I------LQSL----SVAKLLQVIVKKE------------- 77 (219)
Q Consensus 25 ~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~----~------~d~~----~~A~~la~~ik~~------------- 77 (219)
.+|..+-+|+-. -+.++.+...|+-++.++++|. + ++.. .-+.++++.+++.
T Consensus 43 ~~VlviG~GGlG-s~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i 121 (392)
T PRK07878 43 ARVLVIGAGGLG-SPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEFRL 121 (392)
T ss_pred CCEEEECCCHHH-HHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEeccC
Confidence 467777777654 4678888899999999999763 1 1211 2334444444333
Q ss_pred ----------CCCEEEEcccccCCCcCcHHHHHHHHcCCCcccc
Q psy9408 78 ----------NPQLVILGKQSIDSDNNQTGQMLAALLNWPQATF 111 (219)
Q Consensus 78 ----------~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~ 111 (219)
++|+|+....+. .++.+--.++..++.|++..
T Consensus 122 ~~~~~~~~~~~~D~Vvd~~d~~--~~r~~ln~~~~~~~~p~v~~ 163 (392)
T PRK07878 122 DPSNAVELFSQYDLILDGTDNF--ATRYLVNDAAVLAGKPYVWG 163 (392)
T ss_pred ChhHHHHHHhcCCEEEECCCCH--HHHHHHHHHHHHcCCCEEEE
Confidence 467777654432 35566677889999998743
No 499
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=25.18 E-value=1.3e+02 Score=25.11 Aligned_cols=90 Identities=18% Similarity=0.114 Sum_probs=52.7
Q ss_pred CCCHhhHHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCC-CCCHHH---HHHHHHHHHHhc
Q psy9408 2 SINPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDT-ILQSLS---VAKLLQVIVKKE 77 (219)
Q Consensus 2 ~iNp~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~-~~d~~~---~A~~la~~ik~~ 77 (219)
+||-.|.....+-+++-.+. -|+-+|+= .++-|...=|.++-.. ..+|.. ++..+++.+++.
T Consensus 1 ~~~~~~~~~~~~l~~~l~~~------gal~~g~F--------~L~SG~~S~~y~D~~~i~~~p~~l~~i~~~l~~~~~~~ 66 (206)
T PRK13809 1 MMNYEDAKLRDQAVAILYQI------GAIKFGKF--------ILASGEETPIYVDMRLVISSPEVLQTIATLIWRLRPSF 66 (206)
T ss_pred CcchhhhhhHHHHHHHHHHc------CCEEECCE--------EECCcCCCCEEEEChhhccCHHHHHHHHHHHHHHhccC
Confidence 36666666665444433332 24556631 2344655556665333 335543 444555555555
Q ss_pred CCCEEEEcccccCCCcCcHHHHHHHHcCCCcc
Q psy9408 78 NPQLVILGKQSIDSDNNQTGQMLAALLNWPQA 109 (219)
Q Consensus 78 ~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~v 109 (219)
++|+|+.... .+-.++..+|..+|.|++
T Consensus 67 ~~d~IvG~~~----~Gi~~A~~vA~~l~~p~~ 94 (206)
T PRK13809 67 NSSLLCGVPY----TALTLATSISLKYNIPMV 94 (206)
T ss_pred CCCEEEEecC----ccHHHHHHHHHHhCCCEE
Confidence 7888776554 356799999999999976
No 500
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=25.12 E-value=1.3e+02 Score=28.67 Aligned_cols=49 Identities=12% Similarity=0.144 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccc
Q psy9408 62 QSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATF 111 (219)
Q Consensus 62 d~~~~A~~la~~ik~~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~ 111 (219)
+...+. .+++++++-+-=+|++|......+..+---.+|++||+|+++.
T Consensus 206 ~~~~~~-~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~l~~Pv~tt 254 (569)
T PRK08327 206 DPEDIA-RAAEMLAAAERPVIITWRAGRTAEGFASLRRLAEELAIPVVEY 254 (569)
T ss_pred CHHHHH-HHHHHHHhCCCCEEEEecccCCcccHHHHHHHHHHhCCCEEec
Confidence 344433 4444555434345677777654455667789999999999973
Done!