RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9408
         (219 letters)



>d1efpb_ c.26.2.3 (B:) Small, beta subunit of electron transfer
           flavoprotein ETFP {Paracoccus denitrificans [TaxId:
           266]}
          Length = 246

 Score =  173 bits (439), Expect = 1e-54
 Identities = 104/216 (48%), Positives = 150/216 (69%), Gaps = 6/216 (2%)

Query: 1   MSINPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILI----E 56
           MS+NPFDEIA+E AIRL+E   + +EIIA+S G K+  E L+ A+AMG DRAIL+    +
Sbjct: 33  MSMNPFDEIAVEEAIRLKEK-GQAEEIIAVSIGVKQAAETLRTALAMGADRAILVVAADD 91

Query: 57  TDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIV 116
               ++ L+VAK+L  + + E  +L+I GKQ+ID+D N TGQMLAA+L W QATFASK+ 
Sbjct: 92  VQQDIEPLAVAKILAAVARAEGTELIIAGKQAIDNDMNATGQMLAAILGWAQATFASKVE 151

Query: 117 LKKNNKILVTQEIEDGKETILLSLPAIITTDLRMNEPRYVTLMNIIKARKKNINIFKIDE 176
           ++   K  VT+E++ G +TI +SLPA++T DLR+NEPRY +L NI+KA+KK ++     +
Sbjct: 152 IE-GAKAKVTREVDGGLQTIAVSLPAVVTADLRLNEPRYASLPNIMKAKKKPLDEKTAAD 210

Query: 177 LNVNINTGLNIIKVKESHKNNLGIKVKNVIELIDKL 212
             V++   L ++ V+E      GIKV +V EL+ KL
Sbjct: 211 YGVDVAPRLEVVSVREPEGRKAGIKVGSVDELVGKL 246


>d1efvb_ c.26.2.3 (B:) Small, beta subunit of electron transfer
           flavoprotein ETFP {Human (Homo sapiens) [TaxId: 9606]}
          Length = 252

 Score =  172 bits (438), Expect = 2e-54
 Identities = 104/222 (46%), Positives = 152/222 (68%), Gaps = 6/222 (2%)

Query: 1   MSINPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETD-- 58
            S+NPF EIA+E A+RL+E    +KE+IA+SCG  +C+E ++ A+AMG DR I +E    
Sbjct: 33  HSMNPFCEIAVEEAVRLKEK-KLVKEVIAVSCGPAQCQETIRTALAMGADRGIHVEVPPA 91

Query: 59  --TILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIV 116
               L  L VA++L  + +KE   LV+LGKQ+ID D NQTGQM A  L+WPQ TFAS++ 
Sbjct: 92  EAERLGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTFASQVT 151

Query: 117 LKKNNKILVTQEIEDGKETILLSLPAIITTDLRMNEPRYVTLMNIIKARKKNINIFKIDE 176
           L+  +K+ V +EI+ G ET+ L LPA++T DLR+NEPRY TL NI+KA+KK I + K  +
Sbjct: 152 LE-GDKLKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMKAKKKKIEVIKPGD 210

Query: 177 LNVNINTGLNIIKVKESHKNNLGIKVKNVIELIDKLKNEAKI 218
           L V++ + L++I V++  +   G+KV+   +L+ KLK   +I
Sbjct: 211 LGVDLTSKLSVISVEDPPQRTAGVKVETTEDLVAKLKEIGRI 252


>d3clsc1 c.26.2.3 (C:1-262) Small, beta subunit of electron transfer
           flavoprotein ETFP {Methylophilus methylotrophus [TaxId:
           17]}
          Length = 262

 Score =  137 bits (347), Expect = 8e-41
 Identities = 63/230 (27%), Positives = 118/230 (51%), Gaps = 13/230 (5%)

Query: 1   MSINPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIET--D 58
             +N +D+ ++E A++++ESS+   E++ +S G  +  E L+  +A G DRA+ +     
Sbjct: 33  YDLNEWDDFSLEEAMKIKESSDTDVEVVVVSVGPDRVDESLRKCLAKGADRAVRVWDDAA 92

Query: 59  TILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIVLK 118
               ++ V ++L  ++KKE P +V  G QS D     TG  +A+ LNWP A   + +  K
Sbjct: 93  EGSDAIVVGRILTEVIKKEAPDMVFAGVQSSDQAYASTGISVASYLNWPHAAVVADLQYK 152

Query: 119 -KNNKILVTQEIEDG-KETILLSLPAIITTDLRMNEPRYVTLMNIIKARKKNINIFKIDE 176
             +NK ++ +E+E G  + + ++ PA++T  L +N+PRY +L  I +A  K I    + +
Sbjct: 153 PGDNKAVIRRELEGGMLQEVEINCPAVLTIQLGINKPRYASLRGIKQAATKPIEEVSLAD 212

Query: 177 LNVNINT-GLN-----IIKVKESHKNNLGIKVKNVIELIDKLK---NEAK 217
           + ++ N  G       + ++    K    +    + E   K+    NE K
Sbjct: 213 IGLSANDVGAAQSMSRVRRMYIPEKGRATMIEGTISEQAAKIIQIINEFK 262


>d2hjea1 d.110.6.3 (A:52-270) Autoinducer 2 sensor
           kinase/phosphatase LuxQ {Vibrio harveyi [TaxId: 669]}
          Length = 219

 Score = 25.5 bits (56), Expect = 4.4
 Identities = 19/105 (18%), Positives = 44/105 (41%), Gaps = 16/105 (15%)

Query: 93  NNQTGQMLAALLNWPQATFASKIVLKKNNKILVTQEIEDG---KETILLSLPAIITTDLR 149
           +  TG++L    N         +VL  +N   + ++++        +L++    +   L 
Sbjct: 125 DPSTGEVLGFSFN--------AVVL--DNNFALMEKLKSESNVDNVVLVANSVPLANSLI 174

Query: 150 MNEPRYVTLMNIIKARKKNINIFKIDELNVNIN---TGLNIIKVK 191
            +EP  V  +   K+  K ++   + E  + +N   T L ++ V+
Sbjct: 175 GDEPYNVADVLQRKSSDKRLDKLLVIETPIVVNAVTTELCLLTVQ 219


>d2i47a1 d.92.1.10 (A:220-473) TNF-alpha converting enzyme, TACE,
           catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 254

 Score = 25.6 bits (55), Expect = 4.4
 Identities = 4/38 (10%), Positives = 9/38 (23%)

Query: 156 VTLMNIIKARKKNINIFKIDELNVNINTGLNIIKVKES 193
           + L++ +    +N            I      I     
Sbjct: 33  IELIDRVDDIYRNTAWDNAGFKGYGIQIEQIRILKSPQ 70


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.134    0.351 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 755,059
Number of extensions: 34153
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 19
Length of query: 219
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 137
Effective length of database: 1,281,736
Effective search space: 175597832
Effective search space used: 175597832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.6 bits)