BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9409
(472 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|399021116|ref|ZP_10723235.1| tRNA modification GTPase TrmE [Herbaspirillum sp. CF444]
gi|398093100|gb|EJL83490.1| tRNA modification GTPase TrmE [Herbaspirillum sp. CF444]
Length = 468
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 256/472 (54%), Positives = 329/472 (69%), Gaps = 4/472 (0%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M SPI IAT PGRGG+G++RLSGKNLW +V+ VC K + L PR A+Y F +
Sbjct: 1 MTLDTSPIAAIATAPGRGGIGVVRLSGKNLWPVVQAVCGKDETSLAPRHASYLPFRRADG 60
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+ ID+GL IYFKAPHSYTGEDV+EL GHGGP+++ MLL+ CLE G IGLRLA PGEFT+
Sbjct: 61 SAIDQGLAIYFKAPHSYTGEDVLELQGHGGPVVMQMLLARCLEAGADIGLRLAEPGEFTQ 120
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EA+ DLI ASTE+AAKSA SLSG FSK+I+ L++K+ NLR L+E +
Sbjct: 121 RAFLNDKLDLAQAEAVADLIEASTEAAAKSASESLSGAFSKVIHDLVNKVTNLRMLVEAT 180
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + L ++D +L I+ L + + AL+R+GLNVVL G+PNVGKSSL
Sbjct: 181 LDFPEEEIDF-LEQSDARGQLAAIRATLDDVFMHASQGALLRDGLNVVLAGKPNVGKSSL 239
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N L GSDVAIVT IAGTTRDK+T+TIQI I DTAGI + +EVE+IG
Sbjct: 240 LNVLAGSDVAIVTPIAGTTRDKVTETIQIEGMPLNIIDTAGIREAGDD-GSGPDEVERIG 298
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IERTW E+ +D+I+++ DA + + D+KI + FP IPVI +WNKID SGH+ ++
Sbjct: 299 IERTWGEVAKADVILHMLDADHGPTLE-DEKITERFPDGIPVIRIWNKIDRSGHKPAVDQ 357
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
++ +IYLSA+ +GI LLR LL + QT+ES YLARERH+ +L A YL A
Sbjct: 358 MSDATHIYLSATDHLGIELLRGELLRIAGWQQTVESR-YLARERHLIALKAAREYLESAA 416
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + +K+L+L AE+LR E+LSSI GK T +DLL IFS+FCIGK
Sbjct: 417 MHASVDNQASDKSLDLFAEELRLAQERLSSITGKFTPDDLLGVIFSRFCIGK 468
>gi|152981181|ref|YP_001355383.1| tRNA modification GTPase TrmE [Janthinobacterium sp. Marseille]
gi|205829159|sp|A6T4D6.1|MNME_JANMA RecName: Full=tRNA modification GTPase MnmE
gi|151281258|gb|ABR89668.1| tRNA modification GTPase [Janthinobacterium sp. Marseille]
Length = 465
Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust.
Identities = 255/468 (54%), Positives = 333/468 (71%), Gaps = 7/468 (1%)
Query: 5 NSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIID 64
+SPI IAT PGRGG+G++R+SGKN+ SI+E VC +L+PR AT+++F + ++ID
Sbjct: 5 SSPIAAIATAPGRGGIGVVRVSGKNISSIIEAVCATKGAELQPRHATFTNFVNADGSVID 64
Query: 65 KGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFL 124
+GL IYFKAPHSYTGEDV+EL GHGGPI+L MLL+ CLE G IGLR+A PGEFT RAFL
Sbjct: 65 QGLAIYFKAPHSYTGEDVLELQGHGGPIVLQMLLTRCLEAGTDIGLRMAQPGEFTHRAFL 124
Query: 125 NNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFP 184
N+KLDL Q E +IDLI ASTE+AAKSA SLSG FSK I L+DK+ NLR L+E + DFP
Sbjct: 125 NDKLDLAQAEGVIDLIEASTEAAAKSASQSLSGAFSKTIQDLVDKITNLRMLVEATLDFP 184
Query: 185 EENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSL 244
EE + L K+D +L I++ L + Q + AL+R+GLN+VL GQPNVGKSSL N+L
Sbjct: 185 EEEIDF-LEKSDARGQLNGIREALQAVFTQASQGALLRDGLNIVLAGQPNVGKSSLLNAL 243
Query: 245 VGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304
GSDVAIVT+IAGTTRDK+ +TIQI + DTAGI D + +EVE+IGIERT
Sbjct: 244 AGSDVAIVTAIAGTTRDKVIETIQIEGIPVNVIDTAGIRDASDA----TDEVERIGIERT 299
Query: 305 WVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
W +K +D+II++ DA T D++I++ FP NIPV+ +WNKID SGH+ I+ +
Sbjct: 300 WAAVKTADVIIHMLDANRGP-TRADEQIVERFPENIPVMRIWNKIDLSGHRPAIDRMPDS 358
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
+IY+SA+ G++LLR LL LI QT ES YLARERH+ +L A+ +L A +
Sbjct: 359 THIYVSATDLQGMDLLRGELLRLIGWQQTGESL-YLARERHLVALKSAHDHLEMAAQHAA 417
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + L+L AE+LR E+LSSI G+ T++DLL IFS+FCIGK
Sbjct: 418 HDSEATDPALDLFAEELRLAQERLSSITGEFTSDDLLGVIFSRFCIGK 465
>gi|134096615|ref|YP_001101690.1| tRNA modification GTPase TrmE [Herminiimonas arsenicoxydans]
gi|205829158|sp|A4GAN2.1|MNME_HERAR RecName: Full=tRNA modification GTPase MnmE
gi|133740518|emb|CAL63569.1| tRNA modification GTPase TrmE [Herminiimonas arsenicoxydans]
Length = 466
Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust.
Identities = 252/473 (53%), Positives = 329/473 (69%), Gaps = 8/473 (1%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTK-KQLKPRFATYSSFFCKN 59
M +SPI IAT PGRGG+G++R+SGK+L S++ VC K L+ R ATY F +
Sbjct: 1 MTFDSSPIAAIATAPGRGGIGVVRISGKDLSSVMRAVCGADKGSSLQARHATYLDFVNSD 60
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFT 119
++ID+GL IYFKAPHSYTGEDV+EL GHGGP++L MLL+ CLE G IGLR+A PGEFT
Sbjct: 61 GSVIDQGLAIYFKAPHSYTGEDVLELQGHGGPVVLQMLLTRCLEAGADIGLRMAEPGEFT 120
Query: 120 KRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEF 179
RAFLN+KLDL Q E +IDLI ASTE+AAKSA SLSG FSK I L+DK+ NLR L+E
Sbjct: 121 HRAFLNDKLDLAQAEGVIDLIEASTEAAAKSATQSLSGAFSKTIQELVDKITNLRMLVEA 180
Query: 180 SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
+ DFPEE + L K+D +L I++ L ++ Q + AL+R+GLN+VL GQPNVGKSS
Sbjct: 181 TLDFPEEEIDF-LEKSDARGQLTNIREALQRVFSQAAQGALLRDGLNIVLAGQPNVGKSS 239
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N+L GSDVAIVT IAGTTRDK+ +TIQI + DTAGI D +EVE+I
Sbjct: 240 LLNALAGSDVAIVTPIAGTTRDKVIETIQIEGIPVNVIDTAGIRD----AADAGDEVERI 295
Query: 300 GIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNIN 359
GIERTW ++ +D+I+++ DA T D++I + FP N+PV+ VWNKID SGH+ I+
Sbjct: 296 GIERTWAAVQTADVIVHMLDASRGP-TRADEQITERFPANVPVMRVWNKIDLSGHRPAID 354
Query: 360 YKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCA 419
+ +IYLSA+ +G++LLR LL L+ QT ES YLARERH+ +L A+ +L A
Sbjct: 355 RMPDATHIYLSATGLLGMDLLRTELLHLVGWQQTGESL-YLARERHLVALKSAHSHLEMA 413
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + + L+L AE+LR E+LSSI G+ T++DLL IFS+FCIGK
Sbjct: 414 AQHAAHDNEATDPALDLFAEELRLAQERLSSITGEFTSDDLLGVIFSRFCIGK 466
>gi|340789626|ref|YP_004755091.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Collimonas
fungivorans Ter331]
gi|340554893|gb|AEK64268.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Collimonas
fungivorans Ter331]
Length = 465
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 248/472 (52%), Positives = 330/472 (69%), Gaps = 7/472 (1%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M +SPI IAT PGRGG+G++R+SGK L S++E VC + +L PR ATY F +
Sbjct: 1 MSFDSSPIAAIATAPGRGGIGVVRISGKQLGSLIEAVCGIAESKLTPRHATYLPFKNADG 60
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
++ID+GL IYFKAPHSYTGEDV+EL GHGGP++L MLLS CL G+ IGLR+A PGEFT+
Sbjct: 61 SVIDQGLAIYFKAPHSYTGEDVLELQGHGGPVVLQMLLSRCLAAGQDIGLRMAEPGEFTQ 120
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAF+N+KLDL Q EA+ DLI ASTE+AAKSA SLSG FSK+I+ L+ ++ NLR L+E +
Sbjct: 121 RAFINDKLDLAQAEAVADLIEASTEAAAKSASESLSGAFSKVIHALVGQVTNLRMLVEAT 180
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + L K+D +L I+ L + Q + AL+R+GLN+VL GQPNVGKSSL
Sbjct: 181 LDFPEEEIDF-LEKSDARGQLATIRSTLDNVFSQAAQGALLRDGLNIVLAGQPNVGKSSL 239
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N L GSDVAIVT IAGTTRDK+T+TIQ+ I DTAGI + + +EVE+IG
Sbjct: 240 LNVLAGSDVAIVTPIAGTTRDKVTETIQLEGIPLNIIDTAGI----REAEDANDEVERIG 295
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IERTW + N+D+I+++ DA + D+KI+ FP + P+I +WNKID SGH+ ++
Sbjct: 296 IERTWAAVANADVILHMLDANHGPSL-ADEKIVARFPNSAPIIRIWNKIDQSGHKPAVDV 354
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
N+ +IYLSA+ +GI+LLR LL + QT ES YLARERH+ +L A +L A
Sbjct: 355 MNDATHIYLSATDHLGIDLLRTELLRIAGWQQTGESR-YLARERHLIALKAARDHLEIAD 413
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + + +++L+L AE+LR ++LSSI G T +DLL IFS+FCIGK
Sbjct: 414 QHASLDNRVNDQSLDLFAEELRLAQDRLSSITGAFTPDDLLGVIFSRFCIGK 465
>gi|398832295|ref|ZP_10590456.1| tRNA modification GTPase TrmE [Herbaspirillum sp. YR522]
gi|398223392|gb|EJN09736.1| tRNA modification GTPase TrmE [Herbaspirillum sp. YR522]
Length = 466
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 238/472 (50%), Positives = 324/472 (68%), Gaps = 6/472 (1%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M +SPI IAT PGRGG+G++RLSGK+L ++ VC + +QL+PR ATY F +
Sbjct: 1 MTFDSSPIAAIATAPGRGGIGVVRLSGKDLSGVIAAVCGR--RQLQPRHATYLPFCRADG 58
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+ ID+GL I+F APHSYTGEDV+EL GHGGP+++ MLL+ CLE G IGLRLA PGEFT+
Sbjct: 59 SAIDQGLAIHFPAPHSYTGEDVLELQGHGGPVVMQMLLARCLEAGAEIGLRLAEPGEFTQ 118
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+K+DL Q EA+ DLI A+TE+AAKSA SLSG FSK+I+ L++++ +LR L+E +
Sbjct: 119 RAFLNDKIDLAQAEAVADLIEATTEAAAKSASESLSGAFSKVIHQLVEQVTSLRMLVEAT 178
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + L ++D +L I+ L + + + AL+R+GLN VL G+PNVGKSSL
Sbjct: 179 LDFPEEEIDF-LKQSDARGQLATIRATLEDVFRHAAQGALLRDGLNAVLAGKPNVGKSSL 237
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N L G+DVAIVT IAGTTRDK+T+TI I I DTAGI + ++ +EVE+IG
Sbjct: 238 LNVLAGADVAIVTPIAGTTRDKVTQTILIEGMPLNIIDTAGIRE-DAADGSGPDEVERIG 296
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IERTWVE+ +D+I+++ DA + D+ I FP +P++ +WNKID SGH+ +
Sbjct: 297 IERTWVEVAKADVILHMLDADRGPTLE-DENITARFPDGVPIVRIWNKIDRSGHKPAVEA 355
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
+ ++Y+SA++R GI+LLR LL + QT+ES YLARERH+ +L A +L A
Sbjct: 356 MPDATHVYVSAAERQGIDLLRGELLRIAGWQQTVESR-YLARERHLLALKVAGDHLELAA 414
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + L+L AE+LR E LSSI G+ T +DLL IFS+FCIGK
Sbjct: 415 AHAGLDNEGGDHALDLFAEELRLAQESLSSITGRFTPDDLLGVIFSRFCIGK 466
>gi|300313619|ref|YP_003777711.1| tRNA modification (thiophene/furan oxidation) GTPase
[Herbaspirillum seropedicae SmR1]
gi|300076404|gb|ADJ65803.1| tRNA modification (thiophene/furan oxidation) GTPase protein
[Herbaspirillum seropedicae SmR1]
Length = 479
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 242/472 (51%), Positives = 325/472 (68%), Gaps = 6/472 (1%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M +SPI IAT PGRGG+G++RLSGKNL +++ VC + L PR ATY F ++
Sbjct: 14 MTFDSSPIAAIATAPGRGGIGVVRLSGKNLAPVIQAVCGRAS--LAPRHATYLPFLNEDG 71
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+ ID+GL I+F APHSYTGEDV+EL GHGGP+++ MLL+ C++ G IGLRLA PGEFT+
Sbjct: 72 SAIDQGLAIHFPAPHSYTGEDVLELQGHGGPVVMQMLLARCVQAGSEIGLRLAEPGEFTQ 131
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+K+DL Q EA+ DLI A+TE+AAKSA SLSG FSK+I+ L+D++ LR L+E +
Sbjct: 132 RAFLNDKIDLAQAEAVADLIEATTEAAAKSASESLSGAFSKVIHELVDQVTRLRMLVEAT 191
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + L ++D +L I+ L ++ + + AL+R+GLN VL G+PNVGKSSL
Sbjct: 192 LDFPEEEIDF-LKQSDARGQLATIRSTLEEVFKHAAQGALLRDGLNAVLAGKPNVGKSSL 250
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N L GSDVAIVT IAGTTRDK+T+TIQI I DTAGI + +EVE+IG
Sbjct: 251 LNVLAGSDVAIVTPIAGTTRDKVTQTIQIEGMPLNIIDTAGIREAGDD-GSGPDEVERIG 309
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IERTW E+ +D+I+++ DA + D+KI FP +P+I +WNKID SGH+ ++
Sbjct: 310 IERTWAEVAKADVILHMLDADRGPTLE-DEKITSRFPDGVPIIRIWNKIDRSGHKAAVDK 368
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
+ ++YLSAS+ G++LLR LL + QT+ES YLARERH+ +L A+ +L+ A
Sbjct: 369 MPDATHVYLSASEGQGVDLLRAELLRIAGWQQTVESR-YLARERHLLALKAADEHLAHAA 427
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ E L+L AE+LR E+LSSI GK T +DLL IFS+FCIGK
Sbjct: 428 AHAALDNEAGEHALDLFAEELRLAQERLSSITGKFTPDDLLGVIFSRFCIGK 479
>gi|415944378|ref|ZP_11556210.1| tRNA modification GTPase mnmE [Herbaspirillum frisingense GSF30]
gi|407758529|gb|EKF68344.1| tRNA modification GTPase mnmE [Herbaspirillum frisingense GSF30]
Length = 466
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 238/472 (50%), Positives = 321/472 (68%), Gaps = 6/472 (1%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M +SPI IAT PGRGG+G++R+SGKNL ++ VC + L PR ATY F ++
Sbjct: 1 MTFDSSPIAAIATAPGRGGIGVVRISGKNLAPVIRAVCGR--DSLAPRHATYLPFLNEDG 58
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+ ID+GL I+F PHSYTGEDV+EL GHGGP+++ MLL+ C++ G IGLRLA PGEFT+
Sbjct: 59 SAIDQGLAIHFPGPHSYTGEDVLELQGHGGPVVMQMLLARCVQAGAEIGLRLAEPGEFTQ 118
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+K+DL Q EA+ DLI A+TE+AAKSA SLSG FSK+I+ L+D++ LR L+E +
Sbjct: 119 RAFLNDKIDLAQAEAVADLIEATTEAAAKSASESLSGAFSKVIHELVDQVTRLRMLVEAT 178
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + L ++D +L I+ L + + + AL+R+GLN VL G+PNVGKSSL
Sbjct: 179 LDFPEEEIDF-LKQSDARGQLATIRSTLEDVFRHAAQGALLRDGLNAVLAGKPNVGKSSL 237
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N L GSDVAIVT IAGTTRDK+T+TIQI I DTAGI + + +EVE+IG
Sbjct: 238 LNVLAGSDVAIVTPIAGTTRDKVTQTIQIEGMPLNIIDTAGIREAGAD-GSGPDEVERIG 296
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IERTW E+ +D+I+++ DA + D+ I FP +P+I +WNKID SGH+ ++
Sbjct: 297 IERTWAEVAKADVILHMLDADRGPTLE-DENITARFPEGVPIIRIWNKIDRSGHKPAVDQ 355
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
+ ++YLSA++ G+ LLR LL + QT+ES YLARERH+ +L A+ +L+ A
Sbjct: 356 MPDATHVYLSAAEGQGVELLRGELLRIAGWQQTVESR-YLARERHLLALKAADEHLAQAA 414
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ E L+L AE+LR E+LSSI GK T +DLL IFS+FCIGK
Sbjct: 415 AHAALDNEAGEHALDLFAEELRLAQERLSSITGKFTPDDLLGVIFSRFCIGK 466
>gi|409408119|ref|ZP_11256563.1| tRNA modification (thiophene/furan oxidation) GTPase
[Herbaspirillum sp. GW103]
gi|386432575|gb|EIJ45402.1| tRNA modification (thiophene/furan oxidation) GTPase
[Herbaspirillum sp. GW103]
Length = 466
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 238/472 (50%), Positives = 323/472 (68%), Gaps = 6/472 (1%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M +SPI IAT PGRGG+G++R+SGKNL ++ VC + L PR ATY F ++
Sbjct: 1 MTFDSSPIAAIATAPGRGGIGVVRISGKNLAPVMRAVCGR--DSLSPRHATYLPFLNEDG 58
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+ ID+GL I+F APHSYTGEDV+EL GHGGP+++ MLL+ C++ G IGLRLA PGEFT+
Sbjct: 59 SPIDQGLAIHFPAPHSYTGEDVLELQGHGGPVVMQMLLARCVQAGSEIGLRLAEPGEFTQ 118
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+K+DL Q EA+ DLI A+TE+AAKSA SLSG FSK+I+ L+D++ LR L+E +
Sbjct: 119 RAFLNDKIDLAQAEAVADLIEATTEAAAKSASESLSGAFSKVIHELVDQVTRLRMLVEAT 178
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + L ++D +L I+ L ++ + + AL+R+GL VL G+PNVGKSSL
Sbjct: 179 LDFPEEEIDF-LKQSDARGQLATIRATLEEVFRHAAQGALLRDGLKAVLAGKPNVGKSSL 237
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N L GSDVAIVT IAGTTRDK+T+TIQI I DTAGI + +EVE+IG
Sbjct: 238 LNVLAGSDVAIVTPIAGTTRDKVTQTIQIEGMPLNIIDTAGIREAGED-GSGPDEVERIG 296
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IERTW E+ +D+I+++ DA + D+KI FP +P+I +WNKID SGH+ ++
Sbjct: 297 IERTWAEVAKADVILHMLDADRGPTLE-DEKITARFPEGVPIIRIWNKIDRSGHKPAVDS 355
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
+ ++YLSA++ G++LLR LL + QT+ES YLARERH+ +L A+ +L+ A
Sbjct: 356 MPDATHVYLSAAEGQGVDLLRAELLRIAGWQQTVESR-YLARERHLLALKAADEHLAHAA 414
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ E L+L AE+LR ++LSSI GK T +DLL IFS+FCIGK
Sbjct: 415 AHAALDNEAGEHALDLFAEELRLAQDRLSSITGKFTPDDLLGVIFSRFCIGK 466
>gi|427400243|ref|ZP_18891481.1| tRNA modification GTPase mnmE [Massilia timonae CCUG 45783]
gi|425720983|gb|EKU83898.1| tRNA modification GTPase mnmE [Massilia timonae CCUG 45783]
Length = 459
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 242/472 (51%), Positives = 323/472 (68%), Gaps = 13/472 (2%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M SPI IAT PGRGG+G++R SGK+L +V+ + L PR ATY F N
Sbjct: 1 MKLDTSPIAAIATAPGRGGIGVVRASGKSLAFLVDALFPGVT--LAPRHATYIPFKAANG 58
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+IID+GL +YFK PHSYTGEDV+EL GHGGP++L MLL+ LE G GLRLA PGEFT+
Sbjct: 59 DIIDEGLALYFKGPHSYTGEDVLELQGHGGPVVLQMLLARVLEAGAPSGLRLAEPGEFTR 118
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EA+ DLI+ASTE+AAKSA SLSG FS++++ L+D INLR L+E +
Sbjct: 119 RAFLNDKLDLAQAEAVADLIDASTEAAAKSASQSLSGAFSQVVHKLVDGTINLRMLVEAT 178
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + L K++ +L I + L + +Q + AL+R GLNVVL+GQPNVGKSSL
Sbjct: 179 LDFPEEEIDF-LEKSNARGQLAGIIEALENVFRQAAQGALLREGLNVVLVGQPNVGKSSL 237
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G++VAIVT IAGTTRDK+++TIQI I DTAGI + + I+ VE+IG
Sbjct: 238 LNALAGAEVAIVTPIAGTTRDKVSETIQIEGIPLNIIDTAGI----RAVSEEIDVVERIG 293
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IERTW E+ +D+I+++ DA + D+ I+ FP N+PV+ +WNKID SGH+ + +
Sbjct: 294 IERTWGEVGKADVILHLLDANLGP-SAADEAIVAAFPPNVPVVRIWNKIDLSGHKPSKDE 352
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
+ ++YLSA +++GI+LLR LL + QT ES YLARERH+ +L A +L A
Sbjct: 353 SADAVHLYLSAHEKLGIDLLRAELLRIAGWQQTGESL-YLARERHLIALRAAREHLELA- 410
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q +++L+L AE+LR + LSSI G+ T +DLL IFS+FCIGK
Sbjct: 411 ---RQHAMQDDQSLDLFAEELRLAQDHLSSITGQFTPDDLLGVIFSRFCIGK 459
>gi|445499777|ref|ZP_21466632.1| tRNA modification GTPase MnmE [Janthinobacterium sp. HH01]
gi|444789772|gb|ELX11320.1| tRNA modification GTPase MnmE [Janthinobacterium sp. HH01]
Length = 459
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 240/468 (51%), Positives = 322/468 (68%), Gaps = 13/468 (2%)
Query: 5 NSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIID 64
+SPI IAT PGRGG+G++R SGKNL ++ + T L+PR ATY F + +ID
Sbjct: 5 SSPIAAIATAPGRGGIGVVRASGKNLKPLIAALFGDTA--LQPRHATYIPFKQADGALID 62
Query: 65 KGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFL 124
+G+ I+FK PHSYTGEDV+EL GHGGPI+L +LL+ LE G GLRLA PGEFT+RA+L
Sbjct: 63 QGIAIWFKGPHSYTGEDVLELQGHGGPIVLQLLLARVLEAGAEAGLRLAEPGEFTRRAYL 122
Query: 125 NNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFP 184
N+KLDL Q EA+ DLI+ASTE+AAKSA SLSG FSK +N L+D + LR L+E + DFP
Sbjct: 123 NDKLDLAQAEAVADLIDASTEAAAKSASQSLSGAFSKTVNALVDGVTGLRMLVEATLDFP 182
Query: 185 EENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSL 244
EE + L K+D +L I + L ++ +Q + AL+R GLNVVL+GQPNVGKSSL N+L
Sbjct: 183 EEEIDF-LEKSDARGQLAGIVQALEQVFKQASQGALLREGLNVVLVGQPNVGKSSLLNAL 241
Query: 245 VGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304
G+DVAIVT IAGTTRDK+T+TIQI I DTAGI I ++ VE+IGIERT
Sbjct: 242 AGTDVAIVTPIAGTTRDKVTETIQIEGIPLNIIDTAGI----RSIDDGVDVVERIGIERT 297
Query: 305 WVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
W E+ +D+I+++ DA + + D+ I+ FP +PV+ +WNKID SGH+ ++ +
Sbjct: 298 WGEVGKADVILHLLDADHGP-SRADEGIVAAFPPGVPVLRIWNKIDLSGHKPGVDPMEDA 356
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
++YLSA + IGI+LLR LL + QT ES YLARERH+ +L A +L A +
Sbjct: 357 THVYLSAHEHIGIDLLRAELLRIAGWQQTGESL-YLARERHLIALKNAGAHLERAGEHAA 415
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q+ +++L+L AE+LR +LSSI G +++DLL IFS+FCIGK
Sbjct: 416 QN----DQSLDLFAEELRLAQVQLSSITGAFSSDDLLGVIFSRFCIGK 459
>gi|395764317|ref|ZP_10444986.1| tRNA modification GTPase TrmE [Janthinobacterium lividum PAMC
25724]
Length = 459
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 242/472 (51%), Positives = 322/472 (68%), Gaps = 13/472 (2%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M +SPI IAT PGRGG+G++R SGKNL ++ + +QLK R ATY F +
Sbjct: 1 MKLDSSPIAAIATAPGRGGIGVVRASGKNLAPLMTALFGA--QQLKARHATYLPFTETDG 58
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+IID+G+ I+FK PHSYTGEDV+EL GHGGPI+L +LL+ LE GK GLRLA PGEFT+
Sbjct: 59 SIIDQGIAIHFKGPHSYTGEDVLELQGHGGPIVLQLLLARVLEAGKDSGLRLAEPGEFTR 118
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EA+ DLI+ASTE+AAKSA SLSG FS I+ L++++ LR L+E +
Sbjct: 119 RAFLNDKLDLAQAEAVADLIDASTEAAAKSASQSLSGAFSNTIHALVEQVTGLRMLVEAT 178
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + L K++ +L + + L K+ Q + AL+R GLNVVL GQPNVGKSSL
Sbjct: 179 LDFPEEEIDF-LEKSNARGQLKAVIEALNKVFAQAAQGALLREGLNVVLAGQPNVGKSSL 237
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G+DVAIVT IAGTTRDK+++TIQI I DTAGI I+ VE+IG
Sbjct: 238 LNALAGADVAIVTPIAGTTRDKVSETIQIEGIPLNIIDTAGI----RSAGDTIDAVERIG 293
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IERTW E+ +D+I+++ DA + T D+ I+ FP +PV+ VWNKID SGH+ +++
Sbjct: 294 IERTWGEIGKADVILHLLDADHGP-TQADETIVAAFPEGVPVVRVWNKIDLSGHKPSVDT 352
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
+ ++YLSA + IGI+LLR LL + QT ES YLARERH+ +L A +L+ A
Sbjct: 353 LADATHVYLSAHEHIGIDLLRAELLRIAGWQQTGESL-YLARERHLIALKSAGKHLNIAA 411
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q +++L+L AE+LR +LSSI G+ + +DLL IFS+FCIGK
Sbjct: 412 AHAAQD----DQSLDLFAEELRLAQVQLSSITGEFSPDDLLGVIFSRFCIGK 459
>gi|237747089|ref|ZP_04577569.1| tRNA modification GTPase mnmE [Oxalobacter formigenes HOxBLS]
gi|229378440|gb|EEO28531.1| tRNA modification GTPase mnmE [Oxalobacter formigenes HOxBLS]
Length = 462
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 237/474 (50%), Positives = 323/474 (68%), Gaps = 14/474 (2%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQL--KPRFATYSSFFCK 58
M T +SPI IAT PGRGGVGI+R+SGKNL + + K L KPR+A + F
Sbjct: 1 MNTDSSPIAAIATAPGRGGVGIVRISGKNLEPFISEFFRAASKDLPLKPRYAHFLPFLDA 60
Query: 59 NNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEF 118
+ NIID+G+ +YFKAPHS+TGEDV+EL GHGGP++L M+L CL++GK+I LR+A PGEF
Sbjct: 61 DGNIIDEGIALYFKAPHSFTGEDVLELQGHGGPVVLQMVLKRCLQVGKTIQLRIAEPGEF 120
Query: 119 TKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIE 178
T+RAFLN+++DL Q EAI DLI+A+TE A +SA SLSG FSK I L +I LR ++E
Sbjct: 121 TRRAFLNDRIDLAQAEAIADLIDATTEEAVRSASRSLSGVFSKEIRDLASAIIQLRMMVE 180
Query: 179 FSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKS 238
S DFPEE+ + L K + ++I I++ L II Q + AL+R G++VVL GQ NVGKS
Sbjct: 181 SSLDFPEEDIDF-LKKENVKEKIISIRESLRGIISQAAQGALLREGIHVVLAGQTNVGKS 239
Query: 239 SLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEK 298
SL N L GSD+AIVT +AGTTRDKIT+TIQ+ + DTAGI ++ +EVE+
Sbjct: 240 SLLNVLTGSDIAIVTPVAGTTRDKITETIQLEGIPVTLIDTAGIRPSTAE-----DEVER 294
Query: 299 IGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
IGIER W E++ +D+I+++ DA T D+KI +FP NIPVI +WNKID SGH+ +
Sbjct: 295 IGIERAWTEIEKADVILHLLDASLGP-TRSDEKIAADFPPNIPVIQIWNKIDISGHRPST 353
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ I +YLS GI+LL+ LL + QT ES+ YLARERH+ ++ A+ +L+
Sbjct: 354 DNMFGITQVYLSTQTGEGIDLLKTELLKIAGWVQTGEST-YLARERHLTAMKMADTHLAI 412
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
A + + +L+L+AE+LR + L+SI G+ T++DLL IFS+FCIGK
Sbjct: 413 A----TEHAVSGSPSLDLLAEELRLAQDALNSITGEFTSDDLLGLIFSRFCIGK 462
>gi|237749241|ref|ZP_04579721.1| tRNA modification GTPase mnmE [Oxalobacter formigenes OXCC13]
gi|229380603|gb|EEO30694.1| tRNA modification GTPase mnmE [Oxalobacter formigenes OXCC13]
Length = 462
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 239/474 (50%), Positives = 324/474 (68%), Gaps = 14/474 (2%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLK--PRFATYSSFFCK 58
M T +SPI+ IATPPGRGGVGI+R+SGKNL ++ + K T L PR+A + F
Sbjct: 1 MKTDSSPIVAIATPPGRGGVGIVRVSGKNLDPLINELFKDTMADLPLTPRYAHFLPFLDA 60
Query: 59 NNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEF 118
+ +IID+GL IYFKAP+S+TGEDV+EL GHGG +L M+L CL G+ I LR+A PGEF
Sbjct: 61 DKSIIDEGLAIYFKAPNSFTGEDVLELQGHGGTTVLQMVLKRCLLAGEKIDLRMAEPGEF 120
Query: 119 TKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIE 178
T+RAFLN+++DL Q EAI DLI+A+TE A +SA SLSG FSK I+ L+ +I LR ++E
Sbjct: 121 TRRAFLNDRIDLAQAEAIADLIDATTEEAVRSASRSLSGVFSKEIHELVANIIQLRMMVE 180
Query: 179 FSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKS 238
S DFPEE+ + L K + ++ I++ L II Q + AL+R G++VVL GQ NVGKS
Sbjct: 181 SSLDFPEEDIDF-LKKENVEGQIANIQEALSAIIAQSAQGALLREGIHVVLAGQTNVGKS 239
Query: 239 SLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEK 298
SL N+L GS+VAIVT IAGTTRDKIT+TIQI + DTAGI + +EVE+
Sbjct: 240 SLLNTLAGSNVAIVTPIAGTTRDKITETIQIEGVPVTLIDTAGI-----RANSAEDEVER 294
Query: 299 IGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
IGIERTW E+ +D+I+++ DA T D+KI +FP NIPVI +WNKID SGH+ ++
Sbjct: 295 IGIERTWTEIGKADVILHLLDASLGP-TRADEKIAADFPENIPVIQIWNKIDISGHRPSV 353
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ I +YLS GI+LLR+ LL + TQT ES+ YLARERH+ ++ A +L+
Sbjct: 354 DSMFGITQVYLSTQTEQGIDLLRDELLKIAGWTQTGEST-YLARERHLTAMKVAEQHLAI 412
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
A ++ +++L+AE+LR + L+SI G+ T++DLL IFS+FCIGK
Sbjct: 413 A----SEHATAANPSIDLLAEELRLAQDALNSITGEFTSDDLLGLIFSRFCIGK 462
>gi|170694075|ref|ZP_02885231.1| tRNA modification GTPase TrmE [Burkholderia graminis C4D1M]
gi|170141147|gb|EDT09319.1| tRNA modification GTPase TrmE [Burkholderia graminis C4D1M]
Length = 464
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 222/478 (46%), Positives = 320/478 (66%), Gaps = 20/478 (4%)
Query: 1 MLTKNS-PIIGIATPPGRGGVGIIRLS-GKNLWSIVEIVCKK-TKKQLKPRFATYSSFFC 57
MLT +S PI+ IAT PGRGG+G++R+S G+ + + + + T + L PR A+Y F
Sbjct: 1 MLTTDSDPIVAIATAPGRGGIGVVRISFGRAGDAAAQPLMQALTGQALAPRHASYVPFLD 60
Query: 58 KNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGE 117
N N +D+G+ +YF APHSYTGE V+EL GHGGP++L + L C++ G++ GLRLA PGE
Sbjct: 61 DNGNPLDRGIALYFPAPHSYTGEHVLELQGHGGPVVLQLALQRCIDAGRAFGLRLAEPGE 120
Query: 118 FTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLI 177
FT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L++++I LR L+
Sbjct: 121 FTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVEEVITLRMLV 180
Query: 178 EFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGK 237
E + DFPEE + L D +L +I+++L ++ + ++ AL+R GL+VVL GQPNVGK
Sbjct: 181 EATLDFPEEEIDF-LEAADARGKLARIRERLASVLAEARQGALLREGLSVVLAGQPNVGK 239
Query: 238 SSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVE 297
SSL N+L G+++AIVT IAGTTRDK+ +TIQI + DTAG+ D +EVE
Sbjct: 240 SSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDTE-------DEVE 292
Query: 298 KIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSG---H 354
KIGI RTW E++ +D+++++ DAR T D+ I K FP +PV+ V NK D G H
Sbjct: 293 KIGIARTWSEIERADVVLHLLDART-GMTAEDETIAKRFPSGVPVVRVLNKTDLVGLPPH 351
Query: 355 QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ ++ ++ + LSA + G++LLR+ LL I Q S YLARERH+ +L A
Sbjct: 352 TRALDADLELSEVRLSAKQGDGVSLLRDELLR-IAGWQAGAESVYLARERHLIALRAAQE 410
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A +Q+ + L+L AE+LR ++L+SI G+ +++DLL IFS+FCIGK
Sbjct: 411 HLATAAAHADQN----SQALDLFAEELRLAQDQLNSITGEFSSDDLLGVIFSRFCIGK 464
>gi|209519685|ref|ZP_03268474.1| tRNA modification GTPase TrmE [Burkholderia sp. H160]
gi|209499902|gb|EDZ99968.1| tRNA modification GTPase TrmE [Burkholderia sp. H160]
Length = 464
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 221/478 (46%), Positives = 323/478 (67%), Gaps = 20/478 (4%)
Query: 1 MLTKNS-PIIGIATPPGRGGVGIIRLS-GKNLWSIVEIVCKK-TKKQLKPRFATYSSFFC 57
MLT +S PI+ IAT PGRGG+G++R+S G+ + + + + T + L PR A+Y F
Sbjct: 1 MLTTDSDPIVAIATAPGRGGIGVVRISFGRAGEAAAQPLMQALTAQTLAPRHASYVPFLD 60
Query: 58 KNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGE 117
+ N +D+G+ +YF APHSYTGE V+EL GHGGP++L ++L C++ G++ GLRLA PGE
Sbjct: 61 ASGNPLDRGIALYFPAPHSYTGEHVLELQGHGGPVVLQLVLQRCIDAGRAFGLRLAEPGE 120
Query: 118 FTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLI 177
FT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L++++I LR L+
Sbjct: 121 FTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVEEVITLRMLV 180
Query: 178 EFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGK 237
E + DFPEE + L D +L +I+++L ++ + ++ AL+R GL+VVL GQPNVGK
Sbjct: 181 EATLDFPEEEIDF-LEAADARGKLTRIRERLAHVLSEARQGALLREGLSVVLAGQPNVGK 239
Query: 238 SSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVE 297
SSL N+L G+++AIVT IAGTTRDK+ +TIQI + DTAG +++ +EVE
Sbjct: 240 SSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAG-------LRETEDEVE 292
Query: 298 KIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSG---H 354
KIGIERTW E++ +D+++++ DAR D D+ I FP +PV+ V NK D +G
Sbjct: 293 KIGIERTWGEIERADVVLHLLDARAGMTAD-DETIAGRFPRGVPVVRVLNKTDLTGLAPA 351
Query: 355 QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ ++ ++ + LSA K G+ LLR+ LL I Q S YLARERH+ +L A+
Sbjct: 352 TQALDADLELSEVRLSAKKGDGVALLRDELLR-IAGWQAGAESVYLARERHLIALRAADE 410
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A +E+N + L+L AE+LR ++L+SI G+ +++DLL IFS+FCIGK
Sbjct: 411 HLATAAA---HAEQNAQA-LDLFAEELRLAQDQLNSITGEFSSDDLLGVIFSRFCIGK 464
>gi|390569550|ref|ZP_10249835.1| tRNA modification GTPase TrmE [Burkholderia terrae BS001]
gi|389938410|gb|EIN00254.1| tRNA modification GTPase TrmE [Burkholderia terrae BS001]
Length = 466
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 221/479 (46%), Positives = 317/479 (66%), Gaps = 21/479 (4%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-GKNLWSIVEIVCKK-TKKQLKPRFATYSSFFCK 58
+ T + PI+ IAT PGRGG+G++R+S G+ + + + + T + L PR A+Y F
Sbjct: 2 LATDSDPIVAIATAPGRGGIGVVRISFGRAGEAAAQPMMQALTGQPLTPRHASYVPFLDG 61
Query: 59 NNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEF 118
N +D+G+ +YF APHSYTGE V+EL GHGGPI+L ++L C++ G++ GLRLA PGEF
Sbjct: 62 GGNALDRGIALYFPAPHSYTGEHVLELQGHGGPIVLQLVLQRCIDAGRAFGLRLAEPGEF 121
Query: 119 TKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIE 178
T+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L++++I LR L+E
Sbjct: 122 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLEGAFSRDIHALVEEVITLRMLVE 181
Query: 179 FSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKS 238
+ DFPEE + L D +L +I+++L ++ + ++ AL+R GL+VVL GQPNVGKS
Sbjct: 182 ATLDFPEEEIDF-LEAADARGKLARIRERLALVLSEARQGALLREGLSVVLAGQPNVGKS 240
Query: 239 SLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEK 298
SL N+L G+++AIVT IAGTTRDK+ +TIQI + DTAG +++ +EVEK
Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAG-------LRETEDEVEK 293
Query: 299 IGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
IGIERTW E++ +D+++++ DAR TD D I FPM +PV+ V NK D +G ++
Sbjct: 294 IGIERTWGEIQRADVVLHLLDARSGMTTD-DDAIAARFPMGVPVVRVLNKTDLTGIAPSV 352
Query: 359 NYKNNI-----ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEAN 413
N + LSA + GI+LLR LL I Q + YLARERH+ +L A
Sbjct: 353 TGLNGTDEGDSCEVRLSAKRGDGIDLLRGELLR-IAGWQAGAETVYLARERHLIALRAAQ 411
Query: 414 YYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L A + +Q+ + L+L AE+LR ++L+SI G+ T++DLL IFS+FCIGK
Sbjct: 412 EHLGLAAEHADQN----AQALDLFAEELRLAQDQLNSITGEFTSDDLLGVIFSRFCIGK 466
>gi|420253420|ref|ZP_14756474.1| tRNA modification GTPase TrmE [Burkholderia sp. BT03]
gi|398052222|gb|EJL44506.1| tRNA modification GTPase TrmE [Burkholderia sp. BT03]
Length = 466
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 220/479 (45%), Positives = 316/479 (65%), Gaps = 21/479 (4%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-GKNLWSIVEIVCKK-TKKQLKPRFATYSSFFCK 58
+ T + PI+ IAT PGRGG+G++R+S G+ + + + + T + L PR A+Y F
Sbjct: 2 LATDSDPIVAIATAPGRGGIGVVRISFGRAGEAAAQPMMQVLTGQPLTPRHASYVPFLDG 61
Query: 59 NNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEF 118
N +D+G+ +YF APHSYTGE V+EL GHGGPI+L ++L C++ G++ GLRLA PGEF
Sbjct: 62 GGNALDRGIALYFPAPHSYTGEHVLELQGHGGPIVLQLVLQRCIDAGRAFGLRLAEPGEF 121
Query: 119 TKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIE 178
T+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L++++I LR L+E
Sbjct: 122 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLEGAFSRDIHALVEEVITLRMLVE 181
Query: 179 FSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKS 238
+ DFPEE + L D +L +I+++L ++ + ++ AL+R GL+VVL GQPNVGKS
Sbjct: 182 ATLDFPEEEIDF-LEAADARGKLARIRERLALVLSEARQGALLREGLSVVLAGQPNVGKS 240
Query: 239 SLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEK 298
SL N+L G+++AIVT IAGTTRDK+ +TIQI + DTAG +++ +EVEK
Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAG-------LRETEDEVEK 293
Query: 299 IGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
IGIERTW E++ +D+++++ DAR TD D I FP +PV+ V NK D +G ++
Sbjct: 294 IGIERTWGEIQRADVVLHLLDARSSMTTD-DDAIAARFPTGVPVVRVLNKTDLTGVAPDV 352
Query: 359 NYKNNIA-----NIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEAN 413
N + LSA + GI+LLR LL I Q + YLARERH+ +L A
Sbjct: 353 TSLNGAGEGDSCEVRLSAKRGDGIDLLRGELLR-IAGWQAGAETVYLARERHLIALRAAQ 411
Query: 414 YYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L A + +Q+ + L+L AE+LR ++L+SI G+ T++DLL IFS+FCIGK
Sbjct: 412 EHLGLAAEHADQN----AQALDLFAEELRLAQDQLNSITGEFTSDDLLGVIFSRFCIGK 466
>gi|295678212|ref|YP_003606736.1| tRNA modification GTPase TrmE [Burkholderia sp. CCGE1002]
gi|295438055|gb|ADG17225.1| tRNA modification GTPase TrmE [Burkholderia sp. CCGE1002]
Length = 464
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 221/478 (46%), Positives = 322/478 (67%), Gaps = 20/478 (4%)
Query: 1 MLTKNS-PIIGIATPPGRGGVGIIRLS-GKNLWSIVEIVCKK-TKKQLKPRFATYSSFFC 57
MLT +S PI+ IAT PGRGG+G++R+S G+ + + + + T + L R A+Y F
Sbjct: 1 MLTTDSDPIVAIATAPGRGGIGVVRISFGRAGAAAAQPLMQALTGQTLTARHASYVPFLD 60
Query: 58 KNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGE 117
+ N +D+G+ +YF APHSYTGE V+EL GHGGP++L ++L C++ G++ GLRLA PGE
Sbjct: 61 ASGNPLDRGIALYFPAPHSYTGEHVLELQGHGGPVVLQLVLQRCIDAGRAFGLRLAEPGE 120
Query: 118 FTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLI 177
FT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L++++I LR L+
Sbjct: 121 FTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVEEVITLRMLV 180
Query: 178 EFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGK 237
E + DFPEE + L D +L +I+++L ++ + ++ AL+R GL+VVL GQPNVGK
Sbjct: 181 EATLDFPEEEIDF-LEAADARGKLARIRERLAHVLSEARQGALLREGLSVVLAGQPNVGK 239
Query: 238 SSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVE 297
SSL N+L G+++AIVT IAGTTRDK+ +TIQI + DTAG+ D +EVE
Sbjct: 240 SSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDTE-------DEVE 292
Query: 298 KIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSG---H 354
KIGIERTW E++ +D+++++ DAR TD D+ I FP +PV+ V NK D +G
Sbjct: 293 KIGIERTWGEIERADVVLHLLDARAGMTTD-DETIAGRFPRGVPVVRVLNKTDLTGLAPA 351
Query: 355 QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ ++ ++ + LSA + G+ LLR+ LL I Q S YLARERH+ +L A+
Sbjct: 352 TQALDADLELSEVRLSAKQGDGVALLRDELLR-IAGWQAGAESVYLARERHLIALRAADE 410
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A +E+N + L+L AE+LR ++L+SI G+ +++DLL IFS+FCIGK
Sbjct: 411 HLATAAA---HAEQNAQA-LDLFAEELRLAQDQLNSITGEFSSDDLLGVIFSRFCIGK 464
>gi|161526321|ref|YP_001581333.1| tRNA modification GTPase TrmE [Burkholderia multivorans ATCC 17616]
gi|189348964|ref|YP_001944592.1| tRNA modification GTPase TrmE [Burkholderia multivorans ATCC 17616]
gi|160343750|gb|ABX16836.1| tRNA modification GTPase TrmE [Burkholderia multivorans ATCC 17616]
gi|189332986|dbj|BAG42056.1| tRNA modification GTPase [Burkholderia multivorans ATCC 17616]
Length = 464
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 217/480 (45%), Positives = 316/480 (65%), Gaps = 25/480 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-GKN----LWSIVEIVCKKTKKQLKPRFATYSSF 55
+ T + PI+ IAT GRGG+G++R+S G+ +++ +C + +L PR A+Y F
Sbjct: 2 LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPMIDALCGQ---RLAPRHASYVPF 58
Query: 56 FCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMP 115
+D+G+ +YF APHSYTGE V+EL GHGGPI++ +LL CL++G+++GLRLA P
Sbjct: 59 LDAQGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDVGRAVGLRLAEP 118
Query: 116 GEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRT 175
GEFT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L+D +INLR
Sbjct: 119 GEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVINLRM 178
Query: 176 LIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235
L+E + DFPEE + L D +L KI+ +L ++ ++ AL+R GL+VVL GQPNV
Sbjct: 179 LVEATLDFPEEEIDF-LEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNV 237
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKSSL N+L G+++AIVT IAGTTRDK+ +TIQ+ I DTAG +++ +E
Sbjct: 238 GKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAG-------LRETEDE 290
Query: 296 VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355
VE+IGI RTW E++ +D+++++ D+R D D I FP +PV+ V NK D +G
Sbjct: 291 VERIGIARTWSEIERADVVLHLLDSRTGMTAD-DDAIAARFPAGVPVVRVLNKTDLTGVP 349
Query: 356 KNINY---KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEA 412
++ + + ++ ++LSA + GI+LLR LL I Q YLARERH+ +L A
Sbjct: 350 ASVAHPAAEGDLTEVHLSAKRGDGIDLLRAELLR-IAGWQAGAEGVYLARERHLMALRAA 408
Query: 413 NYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A + Q ++L+L AE+LR E+L++I G+ T++DLL IFS+FCIGK
Sbjct: 409 QDHLARAAEHAEQR----AQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464
>gi|167587873|ref|ZP_02380261.1| tRNA modification GTPase TrmE [Burkholderia ubonensis Bu]
Length = 464
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 218/480 (45%), Positives = 315/480 (65%), Gaps = 25/480 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-GKN----LWSIVEIVCKKTKKQLKPRFATYSSF 55
+ T + PI+ IAT GRGG+G++R+S G+ +++ +C + +L PR A+Y F
Sbjct: 2 LATDSDPIVAIATAAGRGGIGVVRVSFGRRGEAAALPLIDALCGQ---RLAPRHASYVPF 58
Query: 56 FCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMP 115
++ +D+G+ +YF APHSYTGE V+EL GHGGPI++ +LL CL+ G+S GLRLA P
Sbjct: 59 LDEHGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRSAGLRLAEP 118
Query: 116 GEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRT 175
GEFT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L+D +I LR
Sbjct: 119 GEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHTLVDDVITLRM 178
Query: 176 LIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235
L+E + DFPEE + L D +L +I+++L ++ ++ AL+R GL+VVL GQPNV
Sbjct: 179 LVEATLDFPEEEIDF-LEAADARGKLARIREQLAHVLGDARQGALLREGLSVVLAGQPNV 237
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKSSL N+L G+++AIVT IAGTTRDK+ +TIQ+ I DTAG +++ +E
Sbjct: 238 GKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAG-------LRETEDE 290
Query: 296 VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355
VE+IGI RTW E++ +D+++++ DAR D D+ I FP +PV+ V NK D +G
Sbjct: 291 VERIGIARTWSEIERADVVLHLLDARGGMTAD-DEAIAARFPAGVPVVRVLNKTDLTGAP 349
Query: 356 KNINY---KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEA 412
++ + + ++ + LSA + GI+LLR LL I Q YLARERH+ +L A
Sbjct: 350 ASVAHPAAQGDLTEVRLSAKRGDGIDLLRGELLR-IAGWQAGAEGVYLARERHLVALRAA 408
Query: 413 NYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A Q ++L+L AE+LR E+L+SI G+ T++DLL IFS+FCIGK
Sbjct: 409 QEHLALAADHAEQR----AQSLDLFAEELRLAQEQLNSITGEFTSDDLLGVIFSRFCIGK 464
>gi|323527917|ref|YP_004230070.1| tRNA modification GTPase TrmE [Burkholderia sp. CCGE1001]
gi|323384919|gb|ADX57010.1| tRNA modification GTPase TrmE [Burkholderia sp. CCGE1001]
Length = 464
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 220/478 (46%), Positives = 318/478 (66%), Gaps = 20/478 (4%)
Query: 1 MLTKNS-PIIGIATPPGRGGVGIIRLS-GKNLWSIVEIVCKK-TKKQLKPRFATYSSFFC 57
MLT +S PI+ IAT PGRGG+G++R+S G+ + + + T + L PR A+Y F
Sbjct: 1 MLTTDSDPIVAIATAPGRGGIGVVRISFGRAGEAAAPPLMQALTGQTLAPRHASYVPFLD 60
Query: 58 KNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGE 117
+ N +D+G+ +YF APHSYTGE V+EL GHGGP++L +LL C++ G++ GLRLA PGE
Sbjct: 61 GSGNALDRGIALYFPAPHSYTGEHVLELQGHGGPVVLQLLLQRCIDAGRAFGLRLAEPGE 120
Query: 118 FTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLI 177
FT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L++++I LR L+
Sbjct: 121 FTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLEGAFSRDIHALVEEVITLRMLV 180
Query: 178 EFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGK 237
E + DFPEE + L D +L +I+++L ++ + ++ AL+R GL+VVL GQPNVGK
Sbjct: 181 EATLDFPEEEIDF-LEAADARGKLARIRERLASVLTEARQGALLREGLSVVLAGQPNVGK 239
Query: 238 SSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVE 297
SSL N+L G+++AIVT IAGTTRDK+ +TIQI + DTAG+ D +EVE
Sbjct: 240 SSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDTE-------DEVE 292
Query: 298 KIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSG---H 354
KIGI RTW E++ +D+++++ DAR T D+ I + FP +PV+ V NK D G
Sbjct: 293 KIGIARTWSEIERADVVLHLLDART-GMTAEDETIARRFPAGVPVVRVLNKTDLVGLPPE 351
Query: 355 QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ ++ +++ + LSA + G+ LLR LL I Q S YLARERH+ +L A
Sbjct: 352 TRALDADFDLSEVRLSAKQGDGVGLLRGELLR-IAGWQAGAESVYLARERHLIALRAAEE 410
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A +Q+ + L+L AE+LR ++L+SI G+ +++DLL IFS+FCIGK
Sbjct: 411 HLATAAAHADQN----SQALDLFAEELRLAQDQLNSITGEFSSDDLLGVIFSRFCIGK 464
>gi|307731534|ref|YP_003908758.1| tRNA modification GTPase TrmE [Burkholderia sp. CCGE1003]
gi|307586069|gb|ADN59467.1| tRNA modification GTPase TrmE [Burkholderia sp. CCGE1003]
Length = 464
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 219/478 (45%), Positives = 320/478 (66%), Gaps = 20/478 (4%)
Query: 1 MLTKN-SPIIGIATPPGRGGVGIIRLS-GKNLWSIVEIVCKK-TKKQLKPRFATYSSFFC 57
MLT + PI+ IAT PGRGG+G++R+S G+ + + + + T + L PR A+Y F
Sbjct: 1 MLTTDFDPIVAIATAPGRGGIGVVRISFGRTGEAAAQPLMQALTGQPLAPRHASYVPFLD 60
Query: 58 KNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGE 117
+ N +D+G+ +YF APHSYTGE V+EL GHGGP++L ++L C++ G++ GLRLA PGE
Sbjct: 61 GSGNPLDRGIALYFPAPHSYTGEHVLELQGHGGPVVLQLVLQRCIDAGRAFGLRLAEPGE 120
Query: 118 FTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLI 177
FT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L++++I LR L+
Sbjct: 121 FTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHTLVEEVITLRMLV 180
Query: 178 EFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGK 237
E + DFPEE + L D +L +I+++L ++ + ++ AL+R GL+VVL GQPNVGK
Sbjct: 181 EATLDFPEEEIDF-LEAADARGKLARIRERLASVLAEARQGALLREGLSVVLAGQPNVGK 239
Query: 238 SSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVE 297
SSL N+L G+++AIVT IAGTTRDK+ +TIQI + DTAG+ D +EVE
Sbjct: 240 SSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDTE-------DEVE 292
Query: 298 KIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSG---H 354
KIGI RTW E++ +D+++++ DAR T D+ I K FP +PV+ V NK D G
Sbjct: 293 KIGIARTWSEIERADVVLHLLDART-GMTAEDETIAKRFPAGVPVVRVLNKTDLVGLPPQ 351
Query: 355 QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ ++ +++ + LSA + G++LLR+ LL I Q S YLARERH+ +L A
Sbjct: 352 TRALDVDLDLSEVRLSAKQGDGVSLLRDELLR-IAGWQAGAESVYLARERHLIALRAAQE 410
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A +Q+ + L+L AE+LR ++L+SI G+ +++DLL IFS+FCIGK
Sbjct: 411 HLATAAAHADQN----SQALDLFAEELRLAQDQLNSITGEFSSDDLLGVIFSRFCIGK 464
>gi|221214581|ref|ZP_03587551.1| tRNA modification GTPase TrmE [Burkholderia multivorans CGD1]
gi|221165471|gb|EED97947.1| tRNA modification GTPase TrmE [Burkholderia multivorans CGD1]
Length = 464
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 217/480 (45%), Positives = 316/480 (65%), Gaps = 25/480 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-GKN----LWSIVEIVCKKTKKQLKPRFATYSSF 55
+ T + PI+ IAT GRGG+G++R+S G+ +++ +C + +L PR A+Y F
Sbjct: 2 LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPMIDALCGQ---RLAPRHASYVPF 58
Query: 56 FCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMP 115
+D+G+ +YF APHSYTGE V+EL GHGGPI++ +LL CL++G+++GLRLA P
Sbjct: 59 LDAQGVPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDVGRAVGLRLAEP 118
Query: 116 GEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRT 175
GEFT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L+D +INLR
Sbjct: 119 GEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVINLRM 178
Query: 176 LIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235
L+E + DFPEE + L D +L KI+ +L ++ ++ AL+R GL+VVL GQPNV
Sbjct: 179 LVEATLDFPEEEIDF-LEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNV 237
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKSSL N+L G+++AIVT IAGTTRDK+ +TIQ+ I DTAG +++ +E
Sbjct: 238 GKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAG-------LRETEDE 290
Query: 296 VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355
VE+IGI RTW E++ +D+++++ D+R D D I FP +PV+ V NK D +G
Sbjct: 291 VERIGIARTWSEIERADVVLHLLDSRTGMTAD-DDAIAARFPAGVPVVRVLNKTDLTGVP 349
Query: 356 KNINY---KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEA 412
++ + + ++ ++LSA + GI+LLR LL I Q YLARERH+ +L A
Sbjct: 350 ASVAHPAAEGDLTEVHLSAKRGDGIDLLRAELLR-IAGWQAGAEGVYLARERHLIALRAA 408
Query: 413 NYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A + Q ++L+L AE+LR E+L++I G+ T++DLL IFS+FCIGK
Sbjct: 409 QDHLARAAEHAEQR----AQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464
>gi|312797626|ref|YP_004030548.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
[Burkholderia rhizoxinica HKI 454]
gi|312169401|emb|CBW76404.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
[Burkholderia rhizoxinica HKI 454]
Length = 493
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 221/476 (46%), Positives = 313/476 (65%), Gaps = 18/476 (3%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS--GKNLWSIVEIVCKKTKKQLKPRFATYSSFFCK 58
M T + PI+ IAT PGRGG+G++R+S + V ++ + +L PR A Y FF
Sbjct: 32 MQTDSDPIVAIATAPGRGGIGVVRVSFGAAGADAAVRLMDALFRDRLAPRRAVYVPFFDA 91
Query: 59 NNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEF 118
+D+G+ +YF APHSYTGE V+EL GHGGP++L ++L CL+ G IGLRLA PGEF
Sbjct: 92 AGVPLDRGIGLYFPAPHSYTGEHVVELQGHGGPVVLQLVLQRCLDAGCDIGLRLAQPGEF 151
Query: 119 TKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIE 178
T+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L+D+++ LR L+E
Sbjct: 152 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLEGAFSRDIHRLVDEVVGLRMLVE 211
Query: 179 FSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKS 238
+ DFPEE + L D +L +I+ L + + K+ AL+R GL+VVL GQPNVGKS
Sbjct: 212 ATLDFPEEEIDF-LEAADARGKLARIRDALAAVQRDAKQGALLREGLSVVLAGQPNVGKS 270
Query: 239 SLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEK 298
SL N+LVG+++AIVT IAGTTRDK+ +TIQI + DTAG+ D +EVE+
Sbjct: 271 SLLNALVGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDTQ-------DEVER 323
Query: 299 IGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
+GI R+W E++ +D+++++ DAR D + D I FP +PV+ ++NKID +G + ++
Sbjct: 324 LGIARSWNEIERADVVLHLLDAR-DGMSVEDHAIAARFPAGVPVVRIFNKIDLAGVEPDV 382
Query: 359 NYKNNIA--NIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYL 416
+ A + LSA +GI+LLR LL I Q S YLARERH+ +L A +L
Sbjct: 383 RDAGDSAAREVRLSAKAALGIDLLRAELLR-IAGWQAGAESVYLARERHLRALRAAGEHL 441
Query: 417 SCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ A + + +N + L+L AE+LR E+L+SI G+ T++DLL IFS+FCIGK
Sbjct: 442 ATAAE---HAARN-AQALDLFAEELRLAQEQLNSITGEFTSDDLLGVIFSRFCIGK 493
>gi|186477840|ref|YP_001859310.1| tRNA modification GTPase TrmE [Burkholderia phymatum STM815]
gi|184194299|gb|ACC72264.1| tRNA modification GTPase TrmE [Burkholderia phymatum STM815]
Length = 466
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 219/477 (45%), Positives = 314/477 (65%), Gaps = 21/477 (4%)
Query: 3 TKNSPIIGIATPPGRGGVGIIRLS-GKNLWSIVEIVCKKTKKQL-KPRFATYSSFFCKNN 60
T + PI+ IAT PGRGG+G++R+S G+ + + + + Q PR A+Y F
Sbjct: 4 TDSDPIVAIATAPGRGGIGVVRISLGRAGEAAAQPMMQALSGQTWTPRHASYVPFLDGGG 63
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
N +D+G+ +YF APHSYTGE V+EL GHGGPI+L ++L C++ G++ GLRLA PGEFT+
Sbjct: 64 NALDRGIALYFPAPHSYTGEHVLELQGHGGPIVLQLVLQRCIDAGQAFGLRLAEPGEFTR 123
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L++ +I LR L+E +
Sbjct: 124 RAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLEGAFSRDIHALVEDVITLRMLVEAT 183
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + L D +L +I+++L ++ + ++ AL+R GL+VVL GQPNVGKSSL
Sbjct: 184 LDFPEEEIDF-LEAADARGKLARIRERLALVLSEARQGALLREGLSVVLAGQPNVGKSSL 242
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G+++AIVT IAGTTRDK+ +TIQ+ + DTAG +++ +EVEKIG
Sbjct: 243 LNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHVIDTAG-------LRETEDEVEKIG 295
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IERTW E++ +D+++++ DAR TD D+ I FP +PV+ V NK D +G ++
Sbjct: 296 IERTWGEIERADVVLHLLDAR-SGMTDDDEAIAARFPAGVPVVRVLNKTDLTGAAPHVEK 354
Query: 361 KN-----NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYY 415
N ++ + LSA GI+LLR LL I Q S YLARERH+ +L A +
Sbjct: 355 LNASGEPDLCEVRLSAKMGDGISLLRGELLR-IAGWQAGAESVYLARERHLIALRAAQNH 413
Query: 416 LSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L A + +Q+ + L+L AE+LR ++L+SI G+ T++DLL IFS+FCIGK
Sbjct: 414 LGLAAEHADQN----AQALDLFAEELRLAQDQLNSITGEFTSDDLLGVIFSRFCIGK 466
>gi|221201821|ref|ZP_03574858.1| tRNA modification GTPase TrmE [Burkholderia multivorans CGD2M]
gi|221207673|ref|ZP_03580681.1| tRNA modification GTPase TrmE [Burkholderia multivorans CGD2]
gi|421473489|ref|ZP_15921595.1| tRNA modification GTPase TrmE [Burkholderia multivorans ATCC
BAA-247]
gi|221172519|gb|EEE04958.1| tRNA modification GTPase TrmE [Burkholderia multivorans CGD2]
gi|221178241|gb|EEE10651.1| tRNA modification GTPase TrmE [Burkholderia multivorans CGD2M]
gi|400220822|gb|EJO51328.1| tRNA modification GTPase TrmE [Burkholderia multivorans ATCC
BAA-247]
Length = 464
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/480 (45%), Positives = 316/480 (65%), Gaps = 25/480 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-GKN----LWSIVEIVCKKTKKQLKPRFATYSSF 55
+ T + PI+ IAT GRGG+G++R+S G+ +++ +C + +L PR A+Y F
Sbjct: 2 LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPMIDALCGQ---RLAPRHASYVPF 58
Query: 56 FCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMP 115
+D+G+ +YF APHSYTGE V+EL GHGGPI++ +LL CL++G+++GLRLA P
Sbjct: 59 LDAQGVPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDVGRAVGLRLAEP 118
Query: 116 GEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRT 175
GEFT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L+D +I+LR
Sbjct: 119 GEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVIDLRM 178
Query: 176 LIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235
L+E + DFPEE + L D +L KI+ +L ++ ++ AL+R GL+VVL GQPNV
Sbjct: 179 LVEATLDFPEEEIDF-LEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNV 237
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKSSL N+L G+++AIVT IAGTTRDK+ +TIQ+ I DTAG +++ +E
Sbjct: 238 GKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAG-------LRETEDE 290
Query: 296 VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355
VE+IGI RTW E++ +D+++++ D+R D D I FP +PV+ V NK D +G
Sbjct: 291 VERIGIARTWSEIERADVVLHLLDSRTGMTAD-DDAIAARFPAGVPVVRVLNKTDLTGVP 349
Query: 356 KNINY---KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEA 412
++ + + ++ ++LSA + GI+LLR LL I Q YLARERH+ +L A
Sbjct: 350 ASVAHPAAEGDLTEVHLSAKRGDGIDLLRAELLR-IAGWQAGAEGVYLARERHLIALRAA 408
Query: 413 NYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A + Q ++L+L AE+LR E+L++I G+ T++DLL IFS+FCIGK
Sbjct: 409 QDHLARAAEHAEQR----AQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464
>gi|187925952|ref|YP_001897594.1| tRNA modification GTPase TrmE [Burkholderia phytofirmans PsJN]
gi|187717146|gb|ACD18370.1| tRNA modification GTPase TrmE [Burkholderia phytofirmans PsJN]
Length = 464
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 219/478 (45%), Positives = 317/478 (66%), Gaps = 20/478 (4%)
Query: 1 MLTKNS-PIIGIATPPGRGGVGIIRLS-GKNLWSIVEIVCKK-TKKQLKPRFATYSSFFC 57
MLT +S PI+ IAT PGRGG+G++R+S G+ + + + + T + L PR A+Y F
Sbjct: 1 MLTTDSDPIVAIATAPGRGGIGVVRISFGRAGEAAAQPLMQALTGQTLAPRHASYVPFLD 60
Query: 58 KNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGE 117
+ N +D+G+ +YF APHSYTGE V+EL GHGGP++L ++L C++ G++ GLRLA PGE
Sbjct: 61 VSGNALDRGIALYFPAPHSYTGEHVLELQGHGGPVVLQLVLQRCIDAGRAFGLRLAEPGE 120
Query: 118 FTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLI 177
FT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L++ +I LR L+
Sbjct: 121 FTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVEDVITLRMLV 180
Query: 178 EFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGK 237
E + DFPEE + L D +L +I+++L ++ + ++ AL+R GL+VVL GQPNVGK
Sbjct: 181 EATLDFPEEEIDF-LEAADARGKLTRIRERLAHVLSEARQGALLREGLSVVLAGQPNVGK 239
Query: 238 SSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVE 297
SSL N+L G+++AIVT IAGTTRDK+ +TIQI + DTAG+ D +EVE
Sbjct: 240 SSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDTE-------DEVE 292
Query: 298 KIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSG---H 354
KIGI RTW E++ +D+++++ DAR T D I FP +PV+ V NK D +G
Sbjct: 293 KIGIARTWSEIERADVVLHLLDART-GMTAEDDAIAGRFPRGVPVVRVLNKTDLTGLAPA 351
Query: 355 QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ ++ ++ + LSA + G+ LLR+ LL I Q S YLARERH+ +L A
Sbjct: 352 TQALDADLELSEVRLSAKQGDGVALLRDELLR-IAGWQAGAESVYLARERHLIALRAAEE 410
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A +Q+ + L+L AE+LR ++L+SI G+ +++DLL IFS+FCIGK
Sbjct: 411 HLATAAAHADQN----SQALDLFAEELRLAQDQLNSITGEFSSDDLLGVIFSRFCIGK 464
>gi|385207754|ref|ZP_10034622.1| tRNA modification GTPase TrmE [Burkholderia sp. Ch1-1]
gi|385180092|gb|EIF29368.1| tRNA modification GTPase TrmE [Burkholderia sp. Ch1-1]
Length = 464
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 217/478 (45%), Positives = 317/478 (66%), Gaps = 20/478 (4%)
Query: 1 MLTKNS-PIIGIATPPGRGGVGIIRLS-GKNLWSIVEIVCKK-TKKQLKPRFATYSSFFC 57
MLT +S PI+ IAT PGRGG+G++R+S G+ + + + + T + L R A+Y F
Sbjct: 1 MLTTDSDPIVAIATAPGRGGIGVVRISFGRAGEAAAQPLMQALTGQTLAARHASYVPFLD 60
Query: 58 KNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGE 117
N + +D+G+ +YF APHSYTGE V+EL GHGGP++L ++L C++ G++ GLRLA PGE
Sbjct: 61 ANGSALDRGIALYFPAPHSYTGEHVLELQGHGGPVVLQLVLQRCIDAGRAFGLRLAEPGE 120
Query: 118 FTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLI 177
FT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L++ +I LR L+
Sbjct: 121 FTRRAFLNDKLDLTQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVEDVITLRMLV 180
Query: 178 EFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGK 237
E + DFPEE + L D +L +I+++L ++ + ++ AL+R GL+VVL GQPNVGK
Sbjct: 181 EATLDFPEEEIDF-LEAADARGKLARIRERLAHVLSEARQGALLREGLSVVLAGQPNVGK 239
Query: 238 SSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVE 297
SSL N+L G+++AIVT IAGTTRDK+ +TIQI + DTAG+ D +EVE
Sbjct: 240 SSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDTE-------DEVE 292
Query: 298 KIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSG---H 354
KIGI RTW E++ +D+++++ DAR + D+ I FP +PV+ V NK D +G
Sbjct: 293 KIGIARTWNEIERADVVLHLLDARTGMTVE-DEAIAGRFPAGVPVVRVLNKTDLTGLAPA 351
Query: 355 QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ ++ +++ + LSA + G+ LLR LL I Q S YLARERH+ +L A
Sbjct: 352 TRALDADPDLSEVRLSAKQGDGVALLREELLR-IAGWQAGAESVYLARERHLIALRAAEE 410
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A +Q+ + L+L AE+LR ++L+SI G+ +++DLL IFS+FCIGK
Sbjct: 411 HLATAAAHADQN----SQALDLFAEELRLAQDQLNSITGEFSSDDLLGVIFSRFCIGK 464
>gi|421479878|ref|ZP_15927539.1| tRNA modification GTPase TrmE [Burkholderia multivorans CF2]
gi|400222042|gb|EJO52448.1| tRNA modification GTPase TrmE [Burkholderia multivorans CF2]
Length = 464
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 215/480 (44%), Positives = 316/480 (65%), Gaps = 25/480 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-GKN----LWSIVEIVCKKTKKQLKPRFATYSSF 55
+ T + PI+ IAT GRGG+G++R+S G+ +++ +C + +L PR A+Y F
Sbjct: 2 LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPMIDALCGQ---RLAPRHASYVPF 58
Query: 56 FCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMP 115
+D+G+ +YF AP+SYTGE V+EL GHGGPI++ +LL CL++G+++GLRLA P
Sbjct: 59 LDAQGVPLDRGIALYFPAPNSYTGEHVLELQGHGGPIVMQLLLQRCLDVGRAVGLRLAEP 118
Query: 116 GEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRT 175
GEFT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L+D +INLR
Sbjct: 119 GEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVINLRM 178
Query: 176 LIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235
L+E + DFPEE + L D +L +I+ +L ++ ++ AL+R GL+VVL GQPNV
Sbjct: 179 LVEATLDFPEEEIDF-LEAADARGKLARIRAQLAHVLGDARQGALLREGLSVVLAGQPNV 237
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKSSL N+L G+++AIVT IAGTTRDK+ +TIQ+ I DTAG +++ +E
Sbjct: 238 GKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAG-------LRETEDE 290
Query: 296 VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355
VE+IGI RTW E++ +D+++++ D+R D D I FP +PV+ V NK D +G
Sbjct: 291 VERIGIARTWSEIERADVVLHLLDSRTGMTAD-DDAIAARFPAGVPVVRVLNKTDLTGVP 349
Query: 356 KNINY---KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEA 412
++ + + ++ ++LSA + GI+LLR LL I Q YLARERH+ +L A
Sbjct: 350 ASVAHPAAEGDLTEVHLSAKRGDGIDLLRAELLR-IAGWQAGAEGVYLARERHLIALRAA 408
Query: 413 NYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A + Q ++L+L AE+LR E+L++I G+ T++DLL IFS+FCIGK
Sbjct: 409 QDHLARAAEHAEQR----AQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464
>gi|107024092|ref|YP_622419.1| tRNA modification GTPase TrmE [Burkholderia cenocepacia AU 1054]
gi|116691178|ref|YP_836801.1| tRNA modification GTPase TrmE [Burkholderia cenocepacia HI2424]
gi|123371157|sp|Q1BSF9.1|MNME_BURCA RecName: Full=tRNA modification GTPase MnmE
gi|205829125|sp|A0KBN1.1|MNME_BURCH RecName: Full=tRNA modification GTPase MnmE
gi|105894281|gb|ABF77446.1| tRNA modification GTPase trmE [Burkholderia cenocepacia AU 1054]
gi|116649267|gb|ABK09908.1| tRNA modification GTPase trmE [Burkholderia cenocepacia HI2424]
Length = 464
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 216/480 (45%), Positives = 315/480 (65%), Gaps = 25/480 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-GKN----LWSIVEIVCKKTKKQLKPRFATYSSF 55
+ T + PI+ IAT GRGG+G++R+S G+ +++ +C + +L PR A+Y F
Sbjct: 2 LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQ---KLAPRHASYVPF 58
Query: 56 FCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMP 115
+ +D+G+ +YF APHSYTGE V+EL GHGGPI++ +LL CL+ G+ GLRLA P
Sbjct: 59 LDAHGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEP 118
Query: 116 GEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRT 175
GEFT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L+D +I LR
Sbjct: 119 GEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVITLRM 178
Query: 176 LIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235
L+E + DFPEE + L D +L KI+ +L ++ ++ AL+R GL+VVL GQPNV
Sbjct: 179 LVEATLDFPEEEIDF-LEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNV 237
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKSSL N+L G+++AIVT IAGTTRDK+ +TIQ+ I DTAG +++ +E
Sbjct: 238 GKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAG-------LRETEDE 290
Query: 296 VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355
VE+IGI RTW E++ +D+++++ D+R D D+ I FP +PV+ V NK D +G
Sbjct: 291 VERIGIARTWSEIERADVVLHLLDSRTGMTAD-DETIAARFPAGVPVVRVLNKTDLTGVP 349
Query: 356 KNINY---KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEA 412
+ + + ++ ++LSA + GI++LR LL I Q YLARERH+ +L A
Sbjct: 350 ACVEHPAAEGDLTEVHLSAKRGDGIDMLRAELLR-IAGWQAGAEGVYLARERHLIALRAA 408
Query: 413 NYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A N +E+ ++L+L AE+LR E+L++I G+ T++DLL IFS+FCIGK
Sbjct: 409 QEHLAQA---ANHAEQR-AQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464
>gi|421899514|ref|ZP_16329877.1| trna modification gtpase trme protein [Ralstonia solanacearum
MolK2]
gi|206590720|emb|CAQ56332.1| trna modification gtpase trme protein [Ralstonia solanacearum
MolK2]
Length = 491
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 217/476 (45%), Positives = 308/476 (64%), Gaps = 23/476 (4%)
Query: 4 KNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNII 63
+ PI IAT PGRGG+G++R+SG ++ ++++ VC + L+PR A Y F + + I
Sbjct: 32 RTVPIAAIATAPGRGGIGVVRVSGPDVRAVMQAVCGRL---LQPRQAAYLPFLGADGHAI 88
Query: 64 DKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAF 123
D+G+ ++F APHSYTGEDV+EL GHGGP+++ +LLS CL+ G+ IG+R+A PGEFT+RAF
Sbjct: 89 DRGIALWFPAPHSYTGEDVLELQGHGGPVVMQLLLSRCLQAGREIGVRVAEPGEFTRRAF 148
Query: 124 LNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDF 183
LN+K+DL Q EA+ DLI ASTE+AA+SA SL G FS+ ++ L++++I+LR L+E + DF
Sbjct: 149 LNDKMDLAQAEAVADLIEASTEAAARSAARSLDGAFSQAVHALVERVIHLRMLVEATLDF 208
Query: 184 PEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNS 243
PEE + L D +L I+ +L ++ Q ++ AL+R GL+VVL GQPNVGKSSL N+
Sbjct: 209 PEEEIDF-LEAADARGQLADIRARLDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNA 267
Query: 244 LVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIER 303
L G+++AIVT IAGTTRDK+ +TIQI I DTAG+ D +EVE+IGIER
Sbjct: 268 LAGAELAIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTE-------DEVERIGIER 320
Query: 304 TWVELKNSDIIIYVQDAR-YDKH------TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356
TW + +D+++++ DA Y H D +I + P +P + V NKID SG
Sbjct: 321 TWAAIARADVVLHLLDAADYRAHGLSAEDAAIDARIAGHVPAGVPTLRVINKIDLSGAAT 380
Query: 357 NINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYL 416
++LSA GI LLR LL+ I Q YLARERH+ +L A +L
Sbjct: 381 PARVDAQPPEVWLSARDGSGIELLRAVLLE-IAGWQGGGEGLYLARERHLSALRTAKDHL 439
Query: 417 SCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ A +Q ++L+L AE+LR E L+SI G +++DLL IFS+FCIGK
Sbjct: 440 AIAADHADQR----AQSLDLFAEELRLAQEALNSITGAFSSDDLLGVIFSRFCIGK 491
>gi|430809707|ref|ZP_19436822.1| tRNA modification GTPase TrmE [Cupriavidus sp. HMR-1]
gi|429497854|gb|EKZ96374.1| tRNA modification GTPase TrmE [Cupriavidus sp. HMR-1]
Length = 475
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 228/490 (46%), Positives = 324/490 (66%), Gaps = 33/490 (6%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M PI IAT PGRGG+G++R+SG ++ +++ VC +T L+PR ATY F
Sbjct: 1 MTVSQIPIAAIATAPGRGGIGVVRVSGPDVGAVMRAVCGRT---LQPRHATYLPFVDARG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
N+ID GL +YF AP+SYTGE+V+EL GHGGP+++ MLLS CLE GK IGLR+A PGEFT+
Sbjct: 58 NVIDHGLALYFPAPNSYTGEEVLELQGHGGPVVMQMLLSRCLEAGKDIGLRVAEPGEFTR 117
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EA+ DLI ASTE+AA+SA S+ G+FSK I+ L++K+I+LR L+E +
Sbjct: 118 RAFLNDKLDLAQAEAVADLIEASTEAAARSAARSMEGEFSKAIHALVEKVIHLRMLVEAT 177
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + L ++ +L +I++ L +++Q ++ +L+R GL+VVL GQPNVGKSSL
Sbjct: 178 LDFPEEEIDF-LEASNARGQLTRIREDLAGVLKQARQGSLLREGLSVVLAGQPNVGKSSL 236
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L GSD+AIVT IAGTTRD++ +TIQI+ I DTAG+ D +EVE+IG
Sbjct: 237 LNALAGSDLAIVTPIAGTTRDRVRETIQIDGIPLHIIDTAGLRD------DAADEVERIG 290
Query: 301 IERTWVELKNSDIIIYVQDAR-YDKH----TD--FDKKIIKNFPMNIPVIYVWNKID--- 350
IERTW ++++DI++++ DA Y +H TD D ++ P P++ V NKID
Sbjct: 291 IERTWEAIRHADIVLHLIDAADYIEHGISETDDHIDDRLSGQLPPGSPIVRVINKIDLAP 350
Query: 351 ------YSGHQKNINYKN--NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLAR 402
+ G++ ++ N N I++SA GI+L+R+ LL LI Q+ +LAR
Sbjct: 351 SVGAMGFGGNRPHVVAANGPNPTEIWISARTGAGIDLMRSELLRLI-GWQSGNEGAFLAR 409
Query: 403 ERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLD 462
ERH+ +L A +L A S + L+L AE+LR + L+SI G+ T++DLL
Sbjct: 410 ERHLIALRNAESHLELA----EASASQHAQALDLFAEELRLAQDHLNSITGEFTSDDLLG 465
Query: 463 NIFSQFCIGK 472
IF++FCIGK
Sbjct: 466 TIFTRFCIGK 475
>gi|83747145|ref|ZP_00944188.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
[Ralstonia solanacearum UW551]
gi|83726120|gb|EAP73255.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
[Ralstonia solanacearum UW551]
Length = 491
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 217/476 (45%), Positives = 308/476 (64%), Gaps = 23/476 (4%)
Query: 4 KNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNII 63
+ PI IAT PGRGG+G++R+SG ++ ++++ VC + L+PR A Y F + + I
Sbjct: 32 RTVPIAAIATAPGRGGIGVVRVSGPDVRAVMQAVCGRL---LQPRQAAYLPFLDADGHAI 88
Query: 64 DKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAF 123
D+G+ ++F APHSYTGEDV+EL GHGGP+++ +LLS CL+ G+ IG+R+A PGEFT+RAF
Sbjct: 89 DRGIALWFPAPHSYTGEDVLELQGHGGPVVMQLLLSRCLQAGREIGVRVAEPGEFTRRAF 148
Query: 124 LNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDF 183
LN+K+DL Q EA+ DLI ASTE+AA+SA SL G FS+ ++ L++++I+LR L+E + DF
Sbjct: 149 LNDKMDLAQAEAVADLIEASTEAAARSAARSLDGAFSQAVHALVERVIHLRMLVEATLDF 208
Query: 184 PEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNS 243
PEE + L D +L I+ +L ++ Q ++ AL+R GL+VVL GQPNVGKSSL N+
Sbjct: 209 PEEEIDF-LEAADARGQLADIRARLDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNA 267
Query: 244 LVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIER 303
L G+++AIVT IAGTTRDK+ +TIQI I DTAG+ D +EVE+IGIER
Sbjct: 268 LAGAELAIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTE-------DEVERIGIER 320
Query: 304 TWVELKNSDIIIYVQDAR-YDKH------TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356
TW + +D+++++ DA Y H D +I + P +P + V NKID SG
Sbjct: 321 TWAAIARADVVLHLLDAADYRAHGLSAEDAAIDARIAGHVPAGVPTLRVINKIDLSGAAT 380
Query: 357 NINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYL 416
++LSA GI LLR LL+ I Q YLARERH+ +L A +L
Sbjct: 381 PARVDAQPPEVWLSARDGSGIELLRAVLLE-IAGWQGGGEGLYLARERHLSALRTAKDHL 439
Query: 417 SCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ A +Q ++L+L AE+LR E L+SI G +++DLL IFS+FCIGK
Sbjct: 440 AIAADHADQR----AQSLDLFAEELRLAQEALNSITGAFSSDDLLGVIFSRFCIGK 491
>gi|206558831|ref|YP_002229591.1| tRNA modification GTPase TrmE [Burkholderia cenocepacia J2315]
gi|421870338|ref|ZP_16301971.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Burkholderia
cenocepacia H111]
gi|444364032|ref|ZP_21164385.1| tRNA modification GTPase TrmE [Burkholderia cenocepacia BC7]
gi|444367833|ref|ZP_21167739.1| tRNA modification GTPase TrmE [Burkholderia cenocepacia
K56-2Valvano]
gi|198034868|emb|CAR50740.1| putative tRNA modification GTPase [Burkholderia cenocepacia J2315]
gi|358069686|emb|CCE52849.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Burkholderia
cenocepacia H111]
gi|443593642|gb|ELT62359.1| tRNA modification GTPase TrmE [Burkholderia cenocepacia BC7]
gi|443602078|gb|ELT70182.1| tRNA modification GTPase TrmE [Burkholderia cenocepacia
K56-2Valvano]
Length = 464
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 215/480 (44%), Positives = 312/480 (65%), Gaps = 25/480 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-GKN----LWSIVEIVCKKTKKQLKPRFATYSSF 55
+ T + PI+ IAT GRGG+G++R+S G+ +++ +C + +L PR A+Y F
Sbjct: 2 LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQ---KLAPRHASYVPF 58
Query: 56 FCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMP 115
+ +D+G+ +YF APHSYTGE V+EL GHGGPI++ +LL CL+ G+ GLRLA P
Sbjct: 59 LDAHGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEP 118
Query: 116 GEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRT 175
GEFT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L+D +I LR
Sbjct: 119 GEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVITLRM 178
Query: 176 LIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235
L+E + DFPEE + L D +L KI+ +L ++ ++ AL+R GL+VVL GQPNV
Sbjct: 179 LVEATLDFPEEEIDF-LEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNV 237
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKSSL N+L G+++AIVT IAGTTRDK+ +TIQ+ I DTAG +++ +E
Sbjct: 238 GKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAG-------LRETEDE 290
Query: 296 VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355
VE+IGI RTW E++ +D+++++ D+R D D+ I FP +PV+ V NK D +G
Sbjct: 291 VERIGIARTWSEIERADVVLHLLDSRTGMTAD-DETIAARFPAGVPVVRVLNKTDLTGVP 349
Query: 356 KNINY---KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEA 412
+ + + ++ ++LSA + GI++LR LL I Q YLARERH+ +L A
Sbjct: 350 ACVEHPAAEGDLTEVHLSAKRGDGIDMLRAELLR-IAGWQAGAEGVYLARERHLIALRAA 408
Query: 413 NYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A Q ++L+L AE+LR E+L++I G+ T++DLL IFS+FCIGK
Sbjct: 409 QEHLAQAADHAEQR----AQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464
>gi|421888617|ref|ZP_16319702.1| GTPase involved in tRNA modification and in thiophene and furan
oxidation [Ralstonia solanacearum K60-1]
gi|378966049|emb|CCF96450.1| GTPase involved in tRNA modification and in thiophene and furan
oxidation [Ralstonia solanacearum K60-1]
Length = 474
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 217/476 (45%), Positives = 308/476 (64%), Gaps = 23/476 (4%)
Query: 4 KNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNII 63
+ PI IAT PGRGG+G++R+SG ++ ++++ VC + L+PR A Y F + + I
Sbjct: 15 RTVPIAAIATAPGRGGIGVVRVSGPDVRAVMQAVCGRL---LQPRQAAYLPFLDVDGHAI 71
Query: 64 DKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAF 123
D+G+ ++F APHSYTGEDV+EL GHGGP+++ +LLS CL+ G+ IG+R+A PGEFT+RAF
Sbjct: 72 DRGIALWFPAPHSYTGEDVLELQGHGGPVVMQLLLSRCLQAGREIGVRVAEPGEFTRRAF 131
Query: 124 LNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDF 183
LN+K+DL Q EA+ DLI ASTE+AA+SA SL G FS+ ++ L++++I+LR L+E + DF
Sbjct: 132 LNDKMDLAQAEAVADLIEASTEAAARSAARSLDGAFSQAVHALVERVIHLRMLVEATLDF 191
Query: 184 PEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNS 243
PEE + L D +L I+ +L ++ Q ++ AL+R GL+VVL GQPNVGKSSL N+
Sbjct: 192 PEEEIDF-LEAADARGQLADIRARLDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNA 250
Query: 244 LVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIER 303
L G+++AIVT IAGTTRDK+ +TIQI I DTAG+ D +EVE+IGIER
Sbjct: 251 LAGAELAIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTE-------DEVERIGIER 303
Query: 304 TWVELKNSDIIIYVQDAR-YDKH------TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356
TW + +D+++++ DA Y H D +I + P +P + V NKID SG
Sbjct: 304 TWAAIARADVVLHLLDAADYRAHGLSAEDAAIDTRIAGHVPAGVPTLRVINKIDLSGAAT 363
Query: 357 NINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYL 416
++LSA GI LLR LL+ I Q YLARERH+ +L A +L
Sbjct: 364 AARVDAQPPEVWLSARDGSGIELLRAALLE-IAGWQGGGEGLYLARERHLSALRTAKDHL 422
Query: 417 SCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ A +Q ++L+L AE+LR E L+SI G +++DLL IFS+FCIGK
Sbjct: 423 AIAADHADQR----AQSLDLFAEELRLAQEALNSITGAFSSDDLLGVIFSRFCIGK 474
>gi|170734511|ref|YP_001766458.1| tRNA modification GTPase TrmE [Burkholderia cenocepacia MC0-3]
gi|205829124|sp|B1K0Y2.1|MNME_BURCC RecName: Full=tRNA modification GTPase MnmE
gi|169817753|gb|ACA92336.1| tRNA modification GTPase TrmE [Burkholderia cenocepacia MC0-3]
Length = 464
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 215/480 (44%), Positives = 312/480 (65%), Gaps = 25/480 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-GKN----LWSIVEIVCKKTKKQLKPRFATYSSF 55
+ T + PI+ IAT GRGG+G++R+S G+ +++ +C + +L PR A+Y F
Sbjct: 2 LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQ---KLAPRHASYVPF 58
Query: 56 FCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMP 115
+ +D+G+ +YF APHSYTGE V+EL GHGGPI++ +LL CL+ G+ GLRLA P
Sbjct: 59 LDAHGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEP 118
Query: 116 GEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRT 175
GEFT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L+D +I LR
Sbjct: 119 GEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVITLRM 178
Query: 176 LIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235
L+E + DFPEE + L D +L KI+ +L ++ ++ AL+R GL+VVL GQPNV
Sbjct: 179 LVEATLDFPEEEIDF-LEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNV 237
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKSSL N+L G+++AIVT IAGTTRDK+ +TIQ+ I DTAG +++ +E
Sbjct: 238 GKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAG-------LRETEDE 290
Query: 296 VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355
VE+IGI RTW E++ +D+++++ D+R D D+ I FP +PV+ V NK D +G
Sbjct: 291 VERIGIARTWSEIERADVVLHLLDSRTGMTPD-DETIAARFPAGVPVVRVLNKTDLTGVP 349
Query: 356 KNINY---KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEA 412
+ + + ++ ++LSA + GI++LR LL I Q YLARERH+ +L A
Sbjct: 350 ACVEHPAAEGDLTEVHLSAKRGDGIDMLRAELLR-IAGWQAGAEGVYLARERHLIALRAA 408
Query: 413 NYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A Q ++L+L AE+LR E+L++I G+ T++DLL IFS+FCIGK
Sbjct: 409 QEHLAQAADHAEQR----AQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464
>gi|254246829|ref|ZP_04940150.1| hypothetical protein BCPG_01599 [Burkholderia cenocepacia PC184]
gi|124871605|gb|EAY63321.1| hypothetical protein BCPG_01599 [Burkholderia cenocepacia PC184]
Length = 464
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 215/480 (44%), Positives = 312/480 (65%), Gaps = 25/480 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-GKN----LWSIVEIVCKKTKKQLKPRFATYSSF 55
+ T + PI+ IAT GRGG+G++R+S G+ +++ +C + +L PR A+Y F
Sbjct: 2 LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEATALPLIDALCGQ---KLAPRHASYVPF 58
Query: 56 FCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMP 115
+ +D+G+ +YF APHSYTGE V+EL GHGGPI++ +LL CL+ G+ GLRLA P
Sbjct: 59 LDAHGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEP 118
Query: 116 GEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRT 175
GEFT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L+D +I LR
Sbjct: 119 GEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVITLRM 178
Query: 176 LIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235
L+E + DFPEE + L D +L KI+ +L ++ ++ AL+R GL+VVL GQPNV
Sbjct: 179 LVEATLDFPEEEIDF-LEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNV 237
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKSSL N+L G+++AIVT IAGTTRDK+ +TIQ+ I DTAG +++ +E
Sbjct: 238 GKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAG-------LRETEDE 290
Query: 296 VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355
VE+IGI RTW E++ +D+++++ D+R D D+ I FP +PV+ V NK D +G
Sbjct: 291 VERIGIARTWSEIERADVVLHLLDSRTGMTAD-DETIAARFPAGVPVVRVLNKTDLTGVP 349
Query: 356 KNINY---KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEA 412
+ + + ++ ++LSA + GI++LR LL I Q YLARERH+ +L A
Sbjct: 350 ACVEHPAAEGDLTEVHLSAKRGDGIDMLRAELLR-IAGWQAGAEGVYLARERHLIALRAA 408
Query: 413 NYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A Q ++L+L AE+LR E+L++I G+ T++DLL IFS+FCIGK
Sbjct: 409 QDHLAQAADHAEQR----AQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464
>gi|161702952|ref|YP_370756.2| tRNA modification GTPase TrmE [Burkholderia sp. 383]
gi|205829162|sp|Q39BQ4.2|MNME_BURS3 RecName: Full=tRNA modification GTPase MnmE
Length = 464
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 215/480 (44%), Positives = 313/480 (65%), Gaps = 25/480 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-GKN----LWSIVEIVCKKTKKQLKPRFATYSSF 55
+ T + PI+ IAT GRGG+G++R+S G+ +++ +C + +L PR A+Y F
Sbjct: 2 LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQ---KLAPRHASYVPF 58
Query: 56 FCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMP 115
++ +D+G+ +YF APHSYTGE V+EL GHGGPI++ +LL CL+ G+ GLRLA P
Sbjct: 59 LDEHGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEP 118
Query: 116 GEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRT 175
GEFT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L+D +I LR
Sbjct: 119 GEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVITLRM 178
Query: 176 LIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235
L+E + DFPEE + L D +L KI+ +L ++ ++ AL+R GL+VVL GQPNV
Sbjct: 179 LVEATLDFPEEEIDF-LEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNV 237
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKSSL N+L G+++AIVT IAGTTRDK+ +TIQ+ I DTAG +++ +E
Sbjct: 238 GKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAG-------LRETEDE 290
Query: 296 VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355
VE+IGI RTW E++ +D+++++ D+R D D+ I FP +PV+ V NK D +G
Sbjct: 291 VERIGIARTWSEIERADVVLHLLDSRNGMTAD-DETIAARFPGGVPVVRVLNKTDLTGVA 349
Query: 356 KNINY---KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEA 412
+ + + ++ ++LSA + GI++LR LL I Q YLARERH+ +L A
Sbjct: 350 ACVEHPAAEGDLTEVHLSAKRGDGIDMLRAELLR-IAGWQAGAEGVYLARERHLIALRAA 408
Query: 413 NYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A Q ++L+L AE+LR E+L++I G+ T++DLL IFS+FCIGK
Sbjct: 409 QEHLAQAADHAEQR----AQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464
>gi|170697748|ref|ZP_02888835.1| tRNA modification GTPase TrmE [Burkholderia ambifaria IOP40-10]
gi|170137363|gb|EDT05604.1| tRNA modification GTPase TrmE [Burkholderia ambifaria IOP40-10]
Length = 464
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/480 (44%), Positives = 315/480 (65%), Gaps = 25/480 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-GKN----LWSIVEIVCKKTKKQLKPRFATYSSF 55
+ T + PI+ IAT GRGG+G++R+S G+ +++ +C + +L PR A+Y F
Sbjct: 2 LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQ---RLTPRHASYVPF 58
Query: 56 FCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMP 115
++ +D+G+ +YF APHSYTGE V+EL GHGGPI++ +LL CL+ G+ GLRLA P
Sbjct: 59 VDEHGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAQP 118
Query: 116 GEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRT 175
GEFT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L++ +I LR
Sbjct: 119 GEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVEDVITLRM 178
Query: 176 LIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235
L+E + DFPEE + L D +L KI+++L +++ ++ AL+R GL+VVL GQPNV
Sbjct: 179 LVEATLDFPEEEIDF-LEAADARGKLAKIREQLAQVLGDARQGALLREGLSVVLAGQPNV 237
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKSSL N+L G+++AIVT IAGTTRDK+ +TIQ+ I DTAG +++ +E
Sbjct: 238 GKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAG-------LRETEDE 290
Query: 296 VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355
VE+IGI RTW E++ +D+++++ D+R D D+ I FP +PV+ V NK D +G
Sbjct: 291 VERIGIARTWSEIERADVVLHLLDSRTGMTAD-DEVIAARFPGGVPVVRVLNKTDLTGVP 349
Query: 356 KNINY---KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEA 412
+ + + ++ ++LSA + GI++LR LL I Q YLARERH+ +L A
Sbjct: 350 ACVEHPAAEGDLTEVHLSAKRGDGIDMLRTELLR-IAGWQAGAEGVYLARERHLIALRAA 408
Query: 413 NYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A Q ++L+L AE+LR E+L++I G+ T++DLL IFS+FCIGK
Sbjct: 409 QEHLAQAADHAEQR----AQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464
>gi|94312541|ref|YP_585751.1| tRNA modification GTPase TrmE [Cupriavidus metallidurans CH34]
gi|205415800|sp|Q1LH94.1|MNME_RALME RecName: Full=tRNA modification GTPase MnmE
gi|93356393|gb|ABF10482.1| GTPase [Cupriavidus metallidurans CH34]
Length = 475
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 227/490 (46%), Positives = 323/490 (65%), Gaps = 33/490 (6%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M PI IAT PGRGG+G++R+SG ++ +++ VC + L+PR ATY F
Sbjct: 1 MTVSQIPIAAIATAPGRGGIGVVRVSGPDVGAVMRAVCGRA---LQPRHATYLPFLDARG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
N+ID GL +YF AP+SYTGE+V+EL GHGGP+++ MLLS CLE GK IGLR+A PGEFT+
Sbjct: 58 NVIDHGLALYFPAPNSYTGEEVLELQGHGGPVVMQMLLSRCLEAGKDIGLRVAEPGEFTR 117
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EA+ DLI ASTE+AA+SA S+ G+FSK I+ L++K+I+LR L+E +
Sbjct: 118 RAFLNDKLDLAQAEAVADLIEASTEAAARSAARSMEGEFSKAIHALVEKVIHLRMLVEAT 177
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + L ++ +L +I++ L +++Q ++ +L+R GL+VVL GQPNVGKSSL
Sbjct: 178 LDFPEEEIDF-LEASNARGQLTRIREDLAGVLKQARQGSLLREGLSVVLAGQPNVGKSSL 236
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L GSD+AIVT IAGTTRD++ +TIQI+ I DTAG+ D +EVE+IG
Sbjct: 237 LNALAGSDLAIVTPIAGTTRDRVRETIQIDGIPLHIIDTAGLRD------DAADEVERIG 290
Query: 301 IERTWVELKNSDIIIYVQDAR-YDKH----TD--FDKKIIKNFPMNIPVIYVWNKID--- 350
IERTW ++++DI++++ DA Y +H TD D ++ P P++ V NKID
Sbjct: 291 IERTWEAIRHADIVLHLIDAADYIEHGISETDDHIDDRLSGQLPPGSPIVRVINKIDLAP 350
Query: 351 ------YSGHQKNINYKN--NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLAR 402
+ G++ ++ N N I++SA GI+L+R+ LL LI Q+ +LAR
Sbjct: 351 SVGAMGFGGNRPHVVAANGPNPTEIWISARTGAGIDLMRSELLRLI-GWQSGNEGAFLAR 409
Query: 403 ERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLD 462
ERH+ +L A +L A S + L+L AE+LR + L+SI G+ T++DLL
Sbjct: 410 ERHLIALRNAESHLELA----EASASQHAQALDLFAEELRLAQDHLNSITGEFTSDDLLG 465
Query: 463 NIFSQFCIGK 472
IF++FCIGK
Sbjct: 466 TIFTRFCIGK 475
>gi|172062136|ref|YP_001809788.1| tRNA modification GTPase TrmE [Burkholderia ambifaria MC40-6]
gi|205829123|sp|B1YQJ5.1|MNME_BURA4 RecName: Full=tRNA modification GTPase MnmE
gi|171994653|gb|ACB65572.1| tRNA modification GTPase TrmE [Burkholderia ambifaria MC40-6]
Length = 464
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/480 (44%), Positives = 313/480 (65%), Gaps = 25/480 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-GKN----LWSIVEIVCKKTKKQLKPRFATYSSF 55
+ T + PI+ IAT GRGG+G++R+S G+ +++ +C + QL PR A+Y F
Sbjct: 2 LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQ---QLAPRHASYVPF 58
Query: 56 FCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMP 115
++ +D+G+ +YF APHSYTGE V+EL GHGGPI++ +LL CL+ G+ GLRLA P
Sbjct: 59 VDEHGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAQP 118
Query: 116 GEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRT 175
GEFT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L++ +I LR
Sbjct: 119 GEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVEDVITLRM 178
Query: 176 LIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235
L+E + DFPEE + L D +L +I+++L ++ ++ AL+R GL+VVL GQPNV
Sbjct: 179 LVEATLDFPEEEIDF-LEAADARGKLARIREQLAHVLGDARQGALLREGLSVVLAGQPNV 237
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKSSL N+L G+++AIVT IAGTTRDK+ +TIQ+ I DTAG +++ +E
Sbjct: 238 GKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAG-------LRETEDE 290
Query: 296 VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355
VE+IGI RTW E++ +D+++++ D+R D D+ I FP +PV+ V NK D +G
Sbjct: 291 VERIGIARTWSEIERADVVLHLLDSRTGMTAD-DEVIAARFPGGVPVVRVLNKTDLTGVP 349
Query: 356 KNINY---KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEA 412
+ + ++ ++LSA + GI++LR LL I Q YLARERH+ +L A
Sbjct: 350 ACVEHPAAAGDLTEVHLSAKRGDGIDMLRAELLR-IAGWQAGAEGVYLARERHLIALRAA 408
Query: 413 NYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A Q ++L+L AE+LR E+L++I G+ T++DLL IFS+FCIGK
Sbjct: 409 QEHLAQAADHAEQR----AQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464
>gi|299068431|emb|CBJ39655.1| GTPase involved in tRNA modification and in thiophene and furan
oxidation [Ralstonia solanacearum CMR15]
Length = 481
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/476 (46%), Positives = 306/476 (64%), Gaps = 23/476 (4%)
Query: 4 KNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNII 63
+ PI IAT PGRGG+G++R+SG ++ ++++ VC + L+PR ATY F + I
Sbjct: 22 RTVPIAAIATAPGRGGIGVVRVSGPDVRAVMQAVCGRL---LQPRQATYLPFLDADGAAI 78
Query: 64 DKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAF 123
D+G+ ++F APHSYTGEDV EL GHGGP+++ +LLS CL G IGLR+A PGEFT+RAF
Sbjct: 79 DRGIALWFPAPHSYTGEDVFELQGHGGPVVMQLLLSRCLRAGHGIGLRVAEPGEFTRRAF 138
Query: 124 LNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDF 183
LN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ ++ L++++I+LR L+E + DF
Sbjct: 139 LNDKLDLAQAEAVADLIEASTEAAARSAARSLDGVFSQTVHALVERVIHLRVLVEATLDF 198
Query: 184 PEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNS 243
PEE + L D +L I+ +L ++ Q ++ AL+R GL+VVL GQPNVGKSSL N+
Sbjct: 199 PEEEIDF-LEAADARGQLADIRARLDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNA 257
Query: 244 LVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIER 303
L G+++AIVT IAGTTRDK+ +TIQI I DTAG+ D +EVE+IGIER
Sbjct: 258 LAGAELAIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTE-------DEVERIGIER 310
Query: 304 TWVELKNSDIIIYVQDAR-YDKH------TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356
TW + +D+++++ DA Y H D +I ++ P +P + V NKID +G
Sbjct: 311 TWAAIARADVVLHLLDAADYRAHGLSAEDATIDARIAEHVPSGVPTLRVINKIDLAGTAA 370
Query: 357 NINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYL 416
++LSA GI LLR LL+ I Q YLARERH+ +L A +L
Sbjct: 371 PDRVDAQPPEVWLSARDGSGIELLRAALLE-IAGWQGGGEGLYLARERHLSALRTAREHL 429
Query: 417 SCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ A +Q ++L+L AE+LR E L+SI G +++DLL IFS+FCIGK
Sbjct: 430 AIAADHADQR----AQSLDLFAEELRLAQEALNSITGAFSSDDLLGVIFSRFCIGK 481
>gi|91785808|ref|YP_561014.1| tRNA modification GTPase TrmE [Burkholderia xenovorans LB400]
gi|122970036|sp|Q13SH7.1|MNME_BURXL RecName: Full=tRNA modification GTPase MnmE
gi|91689762|gb|ABE32962.1| tRNA modification GTPase trmE [Burkholderia xenovorans LB400]
Length = 464
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 216/478 (45%), Positives = 317/478 (66%), Gaps = 20/478 (4%)
Query: 1 MLTKNS-PIIGIATPPGRGGVGIIRLS-GKNLWSIVEIVCKK-TKKQLKPRFATYSSFFC 57
MLT +S PI+ IAT PGRGG+G++R+S G+ + + + + T + L R A+Y F
Sbjct: 1 MLTTDSDPIVAIATAPGRGGIGVVRISFGRAGEAAAQPLMQALTGQTLAARRASYVPFLD 60
Query: 58 KNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGE 117
+ + +D+G+ +YF APHSYTGE V+EL GHGGP++L ++L C++ G++ GLRLA PGE
Sbjct: 61 ASGDALDRGIALYFPAPHSYTGEHVLELQGHGGPVVLQLVLQRCIDAGRAFGLRLAEPGE 120
Query: 118 FTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLI 177
FT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L++ +I LR L+
Sbjct: 121 FTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVEDVITLRMLV 180
Query: 178 EFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGK 237
E + DFPEE + L D +L +I+++L ++ + ++ AL+R GL+VVL GQPNVGK
Sbjct: 181 EATLDFPEEEIDF-LEAADARGKLARIRERLGHVLSEARQGALLREGLSVVLAGQPNVGK 239
Query: 238 SSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVE 297
SSL N+L G+++AIVT IAGTTRDK+ +TIQI + DTAG+ D +EVE
Sbjct: 240 SSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDTE-------DEVE 292
Query: 298 KIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSG---H 354
KIGI RTW E++ +D+++++ DAR + D+ I FP +PV+ V NK D +G
Sbjct: 293 KIGIARTWNEIERADVVLHLLDARTGMTVE-DEAIAGRFPAGVPVVRVLNKTDLTGLAPA 351
Query: 355 QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ ++ +++ + LSA + G+ LLR LL I Q S YLARERH+ +L A
Sbjct: 352 TRALDADLDLSEVRLSAKQGDGVALLREELLR-IAGWQAGAESVYLARERHLIALRAAEE 410
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A +Q+ + L+L AE+LR ++L+SI G+ +++DLL IFS+FCIGK
Sbjct: 411 HLATAAAHADQN----SQALDLFAEELRLAQDQLNSITGEFSSDDLLGVIFSRFCIGK 464
>gi|17544724|ref|NP_518126.1| tRNA modification GTPase TrmE [Ralstonia solanacearum GMI1000]
gi|17427013|emb|CAD13533.1| probable trna modification gtpase trme protein [Ralstonia
solanacearum GMI1000]
Length = 481
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/476 (46%), Positives = 306/476 (64%), Gaps = 23/476 (4%)
Query: 4 KNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNII 63
+ PI IAT PGRGG+G++R+SG ++ ++++ VC + L PR ATY F + I
Sbjct: 22 RTVPIAAIATAPGRGGIGVVRVSGPDVRAVMQAVCGRL---LPPRQATYLPFLDADGAAI 78
Query: 64 DKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAF 123
D+G+ ++F APHSYTGEDV+EL GHGGP+++ +LLS CL G IGLR+A PGEFT+RAF
Sbjct: 79 DRGIALWFPAPHSYTGEDVLELQGHGGPVVMQLLLSRCLRAGHGIGLRVAEPGEFTRRAF 138
Query: 124 LNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDF 183
LN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ ++ L++++I+LR L+E + DF
Sbjct: 139 LNDKLDLAQAEAVADLIEASTEAAARSAARSLDGVFSQTVHALVERVIHLRMLVEATLDF 198
Query: 184 PEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNS 243
PEE + L D +L I+ +L ++ Q ++ AL+R GL+VVL GQPNVGKSSL N+
Sbjct: 199 PEEEIDF-LEAADARGQLADIRARLDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNA 257
Query: 244 LVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIER 303
L G+++AIVT IAGTTRDK+ +TIQI I DTAG+ D +EVE+IGIER
Sbjct: 258 LAGAELAIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTE-------DEVERIGIER 310
Query: 304 TWVELKNSDIIIYVQDAR-YDKH------TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356
TW + +D+++++ DA Y H D +I ++ P +P + V NKID +G
Sbjct: 311 TWAAIARADVVLHLLDAADYRAHGLSAEDAAIDARIAEHVPPGVPTLRVINKIDLAGAAV 370
Query: 357 NINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYL 416
++LSA GI LLR LL+ I Q YLARERH+ +L A +L
Sbjct: 371 PGRVDAQPPEVWLSARDGSGIELLRAALLE-IAGWQGGGEGLYLARERHLSALRSAREHL 429
Query: 417 SCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ A +Q ++L+L AE+LR E L+SI G +++DLL IFS+FCIGK
Sbjct: 430 TIAADHADQR----AQSLDLFAEELRLAQEALNSITGAFSSDDLLGVIFSRFCIGK 481
>gi|205371771|sp|Q8Y3H5.2|MNME_RALSO RecName: Full=tRNA modification GTPase MnmE
Length = 474
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 219/476 (46%), Positives = 306/476 (64%), Gaps = 23/476 (4%)
Query: 4 KNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNII 63
+ PI IAT PGRGG+G++R+SG ++ ++++ VC + L PR ATY F + I
Sbjct: 15 RTVPIAAIATAPGRGGIGVVRVSGPDVRAVMQAVCGRL---LPPRQATYLPFLDADGAAI 71
Query: 64 DKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAF 123
D+G+ ++F APHSYTGEDV+EL GHGGP+++ +LLS CL G IGLR+A PGEFT+RAF
Sbjct: 72 DRGIALWFPAPHSYTGEDVLELQGHGGPVVMQLLLSRCLRAGHGIGLRVAEPGEFTRRAF 131
Query: 124 LNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDF 183
LN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ ++ L++++I+LR L+E + DF
Sbjct: 132 LNDKLDLAQAEAVADLIEASTEAAARSAARSLDGVFSQTVHALVERVIHLRMLVEATLDF 191
Query: 184 PEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNS 243
PEE + L D +L I+ +L ++ Q ++ AL+R GL+VVL GQPNVGKSSL N+
Sbjct: 192 PEEEIDF-LEAADARGQLADIRARLDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNA 250
Query: 244 LVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIER 303
L G+++AIVT IAGTTRDK+ +TIQI I DTAG+ D +EVE+IGIER
Sbjct: 251 LAGAELAIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTE-------DEVERIGIER 303
Query: 304 TWVELKNSDIIIYVQDAR-YDKH------TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356
TW + +D+++++ DA Y H D +I ++ P +P + V NKID +G
Sbjct: 304 TWAAIARADVVLHLLDAADYRAHGLSAEDAAIDARIAEHVPPGVPTLRVINKIDLAGAAV 363
Query: 357 NINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYL 416
++LSA GI LLR LL+ I Q YLARERH+ +L A +L
Sbjct: 364 PGRVDAQPPEVWLSARDGSGIELLRAALLE-IAGWQGGGEGLYLARERHLSALRSAREHL 422
Query: 417 SCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ A +Q ++L+L AE+LR E L+SI G +++DLL IFS+FCIGK
Sbjct: 423 TIAADHADQR----AQSLDLFAEELRLAQEALNSITGAFSSDDLLGVIFSRFCIGK 474
>gi|205829166|sp|Q0BAQ4.2|MNME_BURCM RecName: Full=tRNA modification GTPase MnmE
Length = 464
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/480 (44%), Positives = 313/480 (65%), Gaps = 25/480 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-GKN----LWSIVEIVCKKTKKQLKPRFATYSSF 55
+ T + PI+ IAT GRGG+G++R+S G+ +++ +C + +L PR A+Y F
Sbjct: 2 LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQ---RLAPRHASYVPF 58
Query: 56 FCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMP 115
++ +D+G+ +YF APHSYTGE V+EL GHGGPI++ +LL CL+ G+ GLRLA P
Sbjct: 59 VDEHGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAQP 118
Query: 116 GEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRT 175
GEFT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L++ +I LR
Sbjct: 119 GEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVEDVITLRM 178
Query: 176 LIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235
L+E + DFPEE + L D +L KI+++L ++ ++ AL+R GL+VVL GQPNV
Sbjct: 179 LVEATLDFPEEEIDF-LEAADARGKLAKIREQLAHVLGDARQGALLREGLSVVLAGQPNV 237
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKSSL N+L G+++AIVT IAGTTRDK+ +TIQ+ I DTAG +++ +E
Sbjct: 238 GKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAG-------LRETEDE 290
Query: 296 VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355
VE+IGI RTW E++ +D+++++ D+R D D+ I FP +PV+ V NK D +G
Sbjct: 291 VERIGIARTWSEIERADVVLHLLDSRTGMTAD-DEVIAARFPGGVPVVRVLNKTDLTGVP 349
Query: 356 KNINY---KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEA 412
+ + ++ ++LSA + GI++LR LL I Q YLARERH+ +L A
Sbjct: 350 ACVEHPAAAGDLTEVHLSAKRGDGIDMLRAELLR-IAGWQAGAEGVYLARERHLIALRAA 408
Query: 413 NYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A Q ++L+L AE+LR E+L++I G+ T++DLL IFS+FCIGK
Sbjct: 409 QEHLAQAADHAEQR----AQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464
>gi|329908683|ref|ZP_08274923.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Oxalobacteraceae
bacterium IMCC9480]
gi|327546633|gb|EGF31597.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Oxalobacteraceae
bacterium IMCC9480]
Length = 433
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 227/439 (51%), Positives = 301/439 (68%), Gaps = 11/439 (2%)
Query: 34 VEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPII 93
EI K L+ R ATY+ F + + ID+GL +YFKAPHSYTGEDV+EL GHGGP++
Sbjct: 6 AEICAMLPGKTLQARRATYTRFVDADGSTIDQGLALYFKAPHSYTGEDVLELQGHGGPVV 65
Query: 94 LHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMI 153
+ +LL+ CL+ G I LRLA PGEFT+RAFLN+KLDL Q EA+ DLI+ASTE+AA+SA
Sbjct: 66 MQLLLARCLQAGSHIDLRLAQPGEFTQRAFLNDKLDLAQAEAVADLIDASTEAAARSASQ 125
Query: 154 SLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQ 213
SLSG FS +I L++++ +LR L+E + DFPEE + L K+D +L I+ L K+ +
Sbjct: 126 SLSGVFSGIIRTLVEQVTHLRMLVEATLDFPEEEIDF-LEKSDARGKLAAIRDTLQKVFR 184
Query: 214 QGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFL 273
Q + AL+R+GLN+VL GQPNVGKSSL N+L G+D+AIVT IAGTTRDK+T+TIQI
Sbjct: 185 QSAQGALLRDGLNIVLAGQPNVGKSSLLNALAGADIAIVTPIAGTTRDKVTETIQIEGIP 244
Query: 274 FKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKII 333
I DTAGI + I++VE+IGIERTW + +D+II++ DA T D+ I+
Sbjct: 245 LNIIDTAGI----RYDAEAIDDVERIGIERTWAAVAQADVIIHLLDACRGP-TLADESIV 299
Query: 334 KNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQT 393
FP NIPV+ VWNKID SGH+ I+ + +IYLSA+ ++G+ LLR LL L QT
Sbjct: 300 ARFPANIPVMRVWNKIDLSGHKPAIDRLVDATHIYLSATDQLGMELLREELLRLAGWQQT 359
Query: 394 IESSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIG 453
ES YLARERH+ +L A +L A + + N + L+L AE+LR E+LSSI G
Sbjct: 360 GESL-YLARERHLVALAAAQTHLQFAAE---HAALN-DHALDLFAEELRLAQEQLSSITG 414
Query: 454 KSTTNDLLDNIFSQFCIGK 472
T++DLL IFS+FCIGK
Sbjct: 415 AFTSDDLLGVIFSRFCIGK 433
>gi|407715260|ref|YP_006835825.1| tRNA modification GTPase [Burkholderia phenoliruptrix BR3459a]
gi|407237444|gb|AFT87643.1| tRNA modification GTPase [Burkholderia phenoliruptrix BR3459a]
Length = 464
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 220/478 (46%), Positives = 317/478 (66%), Gaps = 20/478 (4%)
Query: 1 MLTKNS-PIIGIATPPGRGGVGIIRLS-GKNLWSIVEIVCKK-TKKQLKPRFATYSSFFC 57
MLT +S PI+ IAT PGRGG+G++R+S G+ + + + T + L PR A+Y F
Sbjct: 1 MLTTDSDPIVAIATAPGRGGIGVVRISFGRAGEAAAHSLMQALTGQTLGPRHASYVPFLD 60
Query: 58 KNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGE 117
+ N +D+G+ +YF APHSYTGE V+EL GHGGP++L +LL C++ G++ GLRLA PGE
Sbjct: 61 GSGNALDRGIALYFPAPHSYTGEHVLELQGHGGPVVLQLLLQRCIDAGRAFGLRLAEPGE 120
Query: 118 FTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLI 177
FT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L++++I LR L+
Sbjct: 121 FTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLEGAFSRDIHALVEEVITLRMLV 180
Query: 178 EFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGK 237
E + DFPEE + L D +L +I+++L ++ + ++ AL+R GL+VVL GQPNVGK
Sbjct: 181 EATLDFPEEEIDF-LEAADARGKLARIRERLASVLAEARQGALLREGLSVVLAGQPNVGK 239
Query: 238 SSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVE 297
SSL N+L G+++AIVT IAGTTRDK+ +TIQI + DTAG+ D +EVE
Sbjct: 240 SSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDTE-------DEVE 292
Query: 298 KIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSG---H 354
KIGI RTW E++ +D+++++ DAR T D+ I + FP +PV+ V NK D G
Sbjct: 293 KIGIARTWSEIERADVVLHLLDART-GMTAEDETIARRFPAGVPVVRVLNKTDLVGLPPE 351
Query: 355 QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ + +++ + LSA + G+ LLR LL I Q S YLARERH+ +L A
Sbjct: 352 ARALGVDFDLSEVRLSAKQGDGVGLLRGELLR-IAGWQAGAESVYLARERHLIALRAAEE 410
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A +Q+ + L+L AE+LR ++L+SI G+ +++DLL IFS+FCIGK
Sbjct: 411 HLAAAAAHADQN----SQALDLFAEELRLAQDQLNSITGEFSSDDLLGVIFSRFCIGK 464
>gi|77968732|gb|ABB10112.1| tRNA modification GTPase trmE [Burkholderia sp. 383]
Length = 489
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 215/480 (44%), Positives = 313/480 (65%), Gaps = 25/480 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-GKN----LWSIVEIVCKKTKKQLKPRFATYSSF 55
+ T + PI+ IAT GRGG+G++R+S G+ +++ +C + +L PR A+Y F
Sbjct: 27 LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQ---KLAPRHASYVPF 83
Query: 56 FCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMP 115
++ +D+G+ +YF APHSYTGE V+EL GHGGPI++ +LL CL+ G+ GLRLA P
Sbjct: 84 LDEHGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEP 143
Query: 116 GEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRT 175
GEFT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L+D +I LR
Sbjct: 144 GEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVITLRM 203
Query: 176 LIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235
L+E + DFPEE + L D +L KI+ +L ++ ++ AL+R GL+VVL GQPNV
Sbjct: 204 LVEATLDFPEEEIDF-LEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNV 262
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKSSL N+L G+++AIVT IAGTTRDK+ +TIQ+ I DTAG +++ +E
Sbjct: 263 GKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAG-------LRETEDE 315
Query: 296 VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355
VE+IGI RTW E++ +D+++++ D+R D D+ I FP +PV+ V NK D +G
Sbjct: 316 VERIGIARTWSEIERADVVLHLLDSRNGMTAD-DETIAARFPGGVPVVRVLNKTDLTGVA 374
Query: 356 KNINY---KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEA 412
+ + + ++ ++LSA + GI++LR LL I Q YLARERH+ +L A
Sbjct: 375 ACVEHPAAEGDLTEVHLSAKRGDGIDMLRAELLR-IAGWQAGAEGVYLARERHLIALRAA 433
Query: 413 NYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A Q ++L+L AE+LR E+L++I G+ T++DLL IFS+FCIGK
Sbjct: 434 QEHLAQAADHAEQR----AQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 489
>gi|402565071|ref|YP_006614416.1| tRNA modification GTPase MnmE [Burkholderia cepacia GG4]
gi|402246268|gb|AFQ46722.1| tRNA modification GTPase MnmE [Burkholderia cepacia GG4]
Length = 464
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 213/480 (44%), Positives = 314/480 (65%), Gaps = 25/480 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-GKN----LWSIVEIVCKKTKKQLKPRFATYSSF 55
+ T + PI+ IAT GRGG+G++R+S G+ +++ +C + +L PR A+Y F
Sbjct: 2 LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQ---RLAPRHASYVPF 58
Query: 56 FCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMP 115
++ +D+G+ +YF APHSYTGE V+EL GHGGPI++ +LL CL+ G+ GLRLA P
Sbjct: 59 LDEHGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEP 118
Query: 116 GEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRT 175
GEFT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L++ +I LR
Sbjct: 119 GEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVEDVITLRM 178
Query: 176 LIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235
L+E + DFPEE + L D +L +I+++L ++ ++ AL+R GL+VVL GQPNV
Sbjct: 179 LVEATLDFPEEEIDF-LEAADARGKLARIREQLAHVLGDARQGALLREGLSVVLAGQPNV 237
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKSSL N+L G+++AIVT IAGTTRDK+ +TIQ+ I DTAG +++ +E
Sbjct: 238 GKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAG-------LRETEDE 290
Query: 296 VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355
VE+IGI RTW E++ +D+++++ D+R D D+ I FP +PV+ V NK D +G
Sbjct: 291 VERIGIARTWSEIERADVVLHLLDSRTGMTAD-DETIAARFPDRVPVVRVLNKTDLTGVP 349
Query: 356 KNINY---KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEA 412
+ + + ++ ++LSA + GI++LR LL I Q YLARERH+ +L A
Sbjct: 350 ACVEHPAAEGDLTEVHLSAKRGDGIDMLRAELLR-IAGWQAGAEGVYLARERHLIALRAA 408
Query: 413 NYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A Q ++L+L AE+LR E+L++I G+ T++DLL IFS+FCIGK
Sbjct: 409 QEHLAQAADHAEQR----AQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464
>gi|115353264|ref|YP_775103.1| tRNA modification GTPase TrmE [Burkholderia ambifaria AMMD]
gi|115283252|gb|ABI88769.1| tRNA modification GTPase trmE [Burkholderia ambifaria AMMD]
Length = 489
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/480 (44%), Positives = 313/480 (65%), Gaps = 25/480 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-GKN----LWSIVEIVCKKTKKQLKPRFATYSSF 55
+ T + PI+ IAT GRGG+G++R+S G+ +++ +C + +L PR A+Y F
Sbjct: 27 LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQ---RLAPRHASYVPF 83
Query: 56 FCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMP 115
++ +D+G+ +YF APHSYTGE V+EL GHGGPI++ +LL CL+ G+ GLRLA P
Sbjct: 84 VDEHGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAQP 143
Query: 116 GEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRT 175
GEFT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L++ +I LR
Sbjct: 144 GEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVEDVITLRM 203
Query: 176 LIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235
L+E + DFPEE + L D +L KI+++L ++ ++ AL+R GL+VVL GQPNV
Sbjct: 204 LVEATLDFPEEEIDF-LEAADARGKLAKIREQLAHVLGDARQGALLREGLSVVLAGQPNV 262
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKSSL N+L G+++AIVT IAGTTRDK+ +TIQ+ I DTAG +++ +E
Sbjct: 263 GKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAG-------LRETEDE 315
Query: 296 VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355
VE+IGI RTW E++ +D+++++ D+R D D+ I FP +PV+ V NK D +G
Sbjct: 316 VERIGIARTWSEIERADVVLHLLDSRTGMTAD-DEVIAARFPGGVPVVRVLNKTDLTGVP 374
Query: 356 KNINY---KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEA 412
+ + ++ ++LSA + GI++LR LL I Q YLARERH+ +L A
Sbjct: 375 ACVEHPAAAGDLTEVHLSAKRGDGIDMLRAELLR-IAGWQAGAEGVYLARERHLIALRAA 433
Query: 413 NYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A Q ++L+L AE+LR E+L++I G+ T++DLL IFS+FCIGK
Sbjct: 434 QEHLAQAADHAEQR----AQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 489
>gi|350546019|ref|ZP_08915447.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Candidatus
Burkholderia kirkii UZHbot1]
gi|350526196|emb|CCD41062.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Candidatus
Burkholderia kirkii UZHbot1]
Length = 462
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 220/479 (45%), Positives = 309/479 (64%), Gaps = 24/479 (5%)
Query: 1 MLTKNS-PIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKT-----KKQLKPRFATYSS 54
ML+ ++ PI IAT PGRGG+G++RLS E +K + L PR A+Y
Sbjct: 1 MLSNDTDPIAAIATAPGRGGIGVVRLS---FGRAGEAAAQKAMHALCGQALAPRHASYVP 57
Query: 55 FFCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAM 114
F N +D+G+ +YF APHSYTGE V+EL GHGGPI+L ++L + +G+ GLR A
Sbjct: 58 FIDGNGEALDRGIALYFPAPHSYTGEHVLELQGHGGPIVLQLVLQRAIAVGRDFGLRFAE 117
Query: 115 PGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLR 174
PGEFT+RAFLN+KLDL Q EA++DLI ASTE+AA+SA SL G FS+ I++L++ +INLR
Sbjct: 118 PGEFTRRAFLNDKLDLAQAEAVVDLIEASTEAAARSAGRSLDGPFSREIHVLVEDVINLR 177
Query: 175 TLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPN 234
+E + DFPEE + L+ D +L +I+++L + ++ AL+R GL+VVL GQPN
Sbjct: 178 MFVEATLDFPEEEIDF-LDAADARGKLARIRERLNAVFADARQGALLREGLSVVLAGQPN 236
Query: 235 VGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNIN 294
VGKSSL N+L G+++AIVTSIAGTTRDK+ +TIQ+ I DTAG +++ +
Sbjct: 237 VGKSSLLNALAGAELAIVTSIAGTTRDKVAQTIQVEGIPLHIIDTAG-------LRETQD 289
Query: 295 EVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGH 354
EVE+IGIERTW E++ +D+++++ DAR T D+ I FP +PV+ V NK D +G
Sbjct: 290 EVERIGIERTWGEIQRADVVLHLLDARAGA-TPEDQVIAARFPQGVPVVRVMNKTDLAGA 348
Query: 355 QKNINYKNNIA-NIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEAN 413
+ A + LSA GI LLR+ LL I Q S YLARERH+ +L EA
Sbjct: 349 PGALREGEGGAREVNLSAKTGEGIALLRDELLK-IAGWQAGAESVYLARERHLIALREAR 407
Query: 414 YYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A + +Q + L+L AE+LR + L++I G+ T++DLL IFS+FCIGK
Sbjct: 408 GHLALAAEHADQQ----SQVLDLFAEELRLAQDDLNAITGEFTSDDLLGVIFSRFCIGK 462
>gi|254251057|ref|ZP_04944375.1| hypothetical protein BDAG_00227 [Burkholderia dolosa AUO158]
gi|124893666|gb|EAY67546.1| hypothetical protein BDAG_00227 [Burkholderia dolosa AUO158]
Length = 495
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 217/480 (45%), Positives = 319/480 (66%), Gaps = 25/480 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-GKN----LWSIVEIVCKKTKKQLKPRFATYSSF 55
+ T + PI+ IAT GRGG+G++R+S G+ +++ +C + +L PR A+Y F
Sbjct: 33 LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQ---RLAPRHASYVPF 89
Query: 56 FCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMP 115
+ +D+G+ +YF APHSYTGE V+EL GHGGPI++ +LL CL+ G+ GLRLA P
Sbjct: 90 LDAHGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEP 149
Query: 116 GEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRT 175
GEFT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L+D +INLR
Sbjct: 150 GEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDHVINLRM 209
Query: 176 LIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235
L+E + DFPEE + L D +L KI+++L ++ ++ AL+R GL+VVL GQPNV
Sbjct: 210 LVEATLDFPEEEIDF-LEAADARGKLAKIREQLTHVLGDARQGALLREGLSVVLAGQPNV 268
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKSSL N+L G+++AIVT IAGTTRDK+ +TIQ+ I DTAG +++ +E
Sbjct: 269 GKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAG-------LRETDDE 321
Query: 296 VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355
VE+IGI RTW E++ +D+++++ D+R D D++I FP +PV+ V NK D +G
Sbjct: 322 VERIGIARTWSEIERADVVLHLLDSRTGMTAD-DERIAARFPAGVPVVRVLNKTDLTGVP 380
Query: 356 KNINY---KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEA 412
+ + + ++ +++LSA + GI+LLR LL I Q YLARERH+ +L A
Sbjct: 381 ACVEHPAAEGDLTDVHLSAKRGDGIDLLRAELLR-IAGWQAGAEGVYLARERHLIALRAA 439
Query: 413 NYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ + + +E+ ++L+L AE+LR E+L+SI G+ T++DLL IFS+FCIGK
Sbjct: 440 QAHLA---QAADHAEQR-AQSLDLFAEELRLAQEQLNSITGEFTSDDLLGVIFSRFCIGK 495
>gi|171316351|ref|ZP_02905571.1| tRNA modification GTPase TrmE [Burkholderia ambifaria MEX-5]
gi|171098480|gb|EDT43282.1| tRNA modification GTPase TrmE [Burkholderia ambifaria MEX-5]
Length = 464
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 213/480 (44%), Positives = 315/480 (65%), Gaps = 25/480 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-GKN----LWSIVEIVCKKTKKQLKPRFATYSSF 55
+ T + PI+ IAT GRGG+G++R+S G+ +++ +C + +L PR A+Y F
Sbjct: 2 LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQ---RLAPRHASYVPF 58
Query: 56 FCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMP 115
++ +D+G+ +YF APHSYTGE V+EL GHGGPI++ +LL CL+ G+ GLRLA P
Sbjct: 59 LDEHGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAQP 118
Query: 116 GEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRT 175
GEFT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L++ +I LR
Sbjct: 119 GEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVEDVITLRM 178
Query: 176 LIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235
L+E + DFPEE + L D +L +I+++L+ ++ ++ AL+R GL+VVL GQPNV
Sbjct: 179 LVEATLDFPEEEIDF-LEAADARGKLARIREQLVHVLGDARQGALLREGLSVVLAGQPNV 237
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKSSL N+L G+++AIVT IAGTTRDK+ +TIQ+ I DTAG +++ +E
Sbjct: 238 GKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAG-------LRETEDE 290
Query: 296 VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355
VE+IGI RTW E++ +D+++++ D+R T D+ I FP +PV+ V NK D +G
Sbjct: 291 VERIGIARTWSEIERADVVLHLLDSRTGM-TAEDEVIAARFPGGVPVVRVLNKTDLTGVP 349
Query: 356 KNINY---KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEA 412
+ + + ++ ++LSA + GI++LR LL I Q YLARERH+ +L A
Sbjct: 350 ACVEHPSAEGDLTEVHLSAKRGDGIDMLRAELLR-IAGWQAGAEGVYLARERHLIALRAA 408
Query: 413 NYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A Q ++L+L AE+LR E+L++I G+ T++DLL IFS+FCIGK
Sbjct: 409 QEHLAQATDHAEQR----AQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464
>gi|300692994|ref|YP_003753989.1| GTPase involved in tRNA modification and in thiophene and furan
oxidation [Ralstonia solanacearum PSI07]
gi|299080054|emb|CBJ52729.2| GTPase involved in tRNA modification and in thiophene and furan
oxidation [Ralstonia solanacearum PSI07]
Length = 474
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 217/476 (45%), Positives = 307/476 (64%), Gaps = 23/476 (4%)
Query: 4 KNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNII 63
+ PI IAT PGRGG+G++R+SG ++ ++++ VC + L+PR ATY F + + I
Sbjct: 15 RTVPIAAIATAPGRGGIGVVRVSGPDVRAVMQAVCGRL---LQPRQATYLPFLDADGSAI 71
Query: 64 DKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAF 123
D+G+ ++F APHSYTGEDV+EL GHGGP+++ +LLS CL+ G IGLR+A PGEFT+RAF
Sbjct: 72 DRGIALWFPAPHSYTGEDVLELQGHGGPVVMQLLLSRCLQAGHGIGLRVAEPGEFTRRAF 131
Query: 124 LNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDF 183
LN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ ++ L++++I+LR L+E + DF
Sbjct: 132 LNDKLDLAQAEAVADLIEASTEAAARSAARSLDGAFSQAVHALVERVIHLRMLVEATLDF 191
Query: 184 PEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNS 243
PEE + L +D +L I+ +L ++ Q ++ AL+R GL+VVL GQPNVGKSSL N+
Sbjct: 192 PEEEIDF-LEASDARGQLADIRARLDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNA 250
Query: 244 LVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIER 303
L G+++AIVT IAGTTRDK+ +TIQI I DTAG+ D +EVE+IGIER
Sbjct: 251 LAGAELAIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTE-------DEVERIGIER 303
Query: 304 TWVELKNSDIIIYVQDAR-YDKH------TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356
TW + +D+++++ DA Y H D +I + P +P + V NKID +G
Sbjct: 304 TWAAIARADVVLHLLDAADYRAHGLCAEDAAIDARIAGHVPSGVPTLRVINKIDLTGLAV 363
Query: 357 NINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYL 416
++LSA GI LR LL+ I Q YLARERH+ +L A +L
Sbjct: 364 PGRVDAQPPEVWLSARDGSGIESLRAALLE-IAGWQGGGEGLYLARERHLAALRAAKAHL 422
Query: 417 SCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ +Q ++L+L AE+LR E L+SI G +++DLL IFS+FCIGK
Sbjct: 423 AIGADHADQQ----AQSLDLFAEELRLAQEALNSITGAFSSDDLLGVIFSRFCIGK 474
>gi|377822207|ref|YP_004978578.1| tRNA modification GTPase TrmE [Burkholderia sp. YI23]
gi|357937042|gb|AET90601.1| tRNA modification GTPase TrmE [Burkholderia sp. YI23]
Length = 462
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 221/476 (46%), Positives = 310/476 (65%), Gaps = 18/476 (3%)
Query: 1 MLTKNS-PIIGIATPPGRGGVGIIRLS-GKNLWSIVEIVCKKTKKQ-LKPRFATYSSFFC 57
ML+ ++ PI+ IAT PGRGG+G++RLS G+ + + Q L PR A+Y F
Sbjct: 1 MLSNDTDPIVAIATAPGRGGIGVVRLSFGRAGEAAAQKAMHALCGQALAPRHASYVPFVD 60
Query: 58 KNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGE 117
N +D+G+ +YF APHSYTGE V+EL GHGGP++L ++L +E G+ GLRLA PGE
Sbjct: 61 GNGEALDRGIALYFPAPHSYTGEHVLELQGHGGPMVLQLILQRAIEAGRDFGLRLAEPGE 120
Query: 118 FTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLI 177
FT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L++ +I LR L+
Sbjct: 121 FTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLEGAFSREIHALVEDVITLRMLV 180
Query: 178 EFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGK 237
E + DFPEE + L D +L +I+++L ++ ++ AL+R GL+VVL GQPNVGK
Sbjct: 181 EATLDFPEEEIDF-LEAADARGKLARIRERLDTVLADARQGALLREGLSVVLAGQPNVGK 239
Query: 238 SSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVE 297
SSL N+L G+++AIVT IAGTTRDK+ +TIQ+ I DTAG+ D +EVE
Sbjct: 240 SSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRDTQ-------DEVE 292
Query: 298 KIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
+IGIERTW E++ +D+++++ DAR + T D I FP +PV+ V NK D +G
Sbjct: 293 RIGIERTWGEIERADVVLHLLDAR-EGATPEDHVIAARFPSGVPVVRVMNKTDLAGAPAA 351
Query: 358 INYK-NNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYL 416
++ + + LSA GI+LLRN LL I Q S YLARERH+ +L EA +L
Sbjct: 352 VHDSIGHAREVNLSAKTGDGISLLRNELLK-IAGWQAGAESVYLARERHLIALREARDHL 410
Query: 417 SCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ A + +Q + L+L AE+LR + L++I G+ T++DLL IFS+FCIGK
Sbjct: 411 ALAAEHADQ----HSQVLDLFAEELRLAQDNLNAITGEFTSDDLLGVIFSRFCIGK 462
>gi|387903674|ref|YP_006334013.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Burkholderia sp.
KJ006]
gi|387578566|gb|AFJ87282.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Burkholderia sp.
KJ006]
Length = 464
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 213/477 (44%), Positives = 310/477 (64%), Gaps = 19/477 (3%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-GKNLWSIVEIVCKK-TKKQLKPRFATYSSFFCK 58
+ T + PI+ IAT GRGG+G++R+S G+ + + + ++L PR A+Y F
Sbjct: 2 LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAAQALSDALCGQRLAPRHASYVPFVDA 61
Query: 59 NNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEF 118
+ +D+G+ +YF APHSYTGE V+EL GHGGPI++ +LL CL+ G+ GLRLA PGEF
Sbjct: 62 HGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEPGEF 121
Query: 119 TKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIE 178
T+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L++ +I LR L+E
Sbjct: 122 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVEDVITLRMLVE 181
Query: 179 FSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKS 238
+ DFPEE + L D +L KI+++L ++ ++ AL+R GL+VVL GQPNVGKS
Sbjct: 182 ATLDFPEEEIDF-LEAADARGKLAKIREQLAHVLGDARQGALLREGLSVVLAGQPNVGKS 240
Query: 239 SLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEK 298
SL N+L G+++AIVT IAGTTRDK+ +TIQ+ I DTAG +++ +EVE+
Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAG-------LRETEDEVER 293
Query: 299 IGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
IGI RTW E++ +D+++++ D+R T D+ I FP +PV+ V NK D +G +
Sbjct: 294 IGIARTWSEIERADVVLHLLDSRTGM-TPEDETIAARFPDGVPVVRVLNKTDLTGVPACV 352
Query: 359 NY---KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYY 415
+ ++ ++LSA + GI++LR LL I Q YLARERH+ +L A +
Sbjct: 353 EHPAAAGDLTEVHLSAKRGDGIDMLRAELLR-IAGWQAGAEGVYLARERHLIALRAAQEH 411
Query: 416 LSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L+ A Q ++L+L AE+LR E+L++I G+ T++DLL IFS+FCIGK
Sbjct: 412 LAQAADHAEQR----AQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464
>gi|413963965|ref|ZP_11403192.1| tRNA modification GTPase TrmE [Burkholderia sp. SJ98]
gi|413929797|gb|EKS69085.1| tRNA modification GTPase TrmE [Burkholderia sp. SJ98]
Length = 462
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 219/479 (45%), Positives = 312/479 (65%), Gaps = 24/479 (5%)
Query: 1 MLTKNS-PIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKT-----KKQLKPRFATYSS 54
ML+ ++ PI+ IAT PGRGG+G++RLS E +K + L PR A+Y
Sbjct: 1 MLSNDTDPIVAIATAPGRGGIGVVRLS---FGRAGEAAAQKAMHALCGQALAPRHASYVP 57
Query: 55 FFCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAM 114
F N +D+G+ +YF AP+SYTGE V+EL GHGGPI+L ++L +E G+ GLRLA
Sbjct: 58 FSDGNGEALDRGIALYFPAPNSYTGEHVLELQGHGGPIVLQLVLQRAIEAGRDFGLRLAE 117
Query: 115 PGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLR 174
PGEFT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L++ +I LR
Sbjct: 118 PGEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLEGAFSREIHALVEDVITLR 177
Query: 175 TLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPN 234
L+E + DFPEE + L D +L +I+++L ++ ++ AL+R GL+VVL GQPN
Sbjct: 178 MLVEATLDFPEEEIDF-LEAADARGKLARIRERLDTVLADARQGALLREGLSVVLAGQPN 236
Query: 235 VGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNIN 294
VGKSSL N+L G+++AIVT IAGTTRDK+ +TIQ+ I DTAG +++ +
Sbjct: 237 VGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAG-------LRETQD 289
Query: 295 EVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGH 354
EVE+IGIERTW E++ +D+++++ DAR + T D+ I FP +PV+ V NK D +G
Sbjct: 290 EVERIGIERTWGEIERADVVLHLLDAR-EGVTPEDQAIAARFPAGVPVVRVMNKTDLAGA 348
Query: 355 QKNI-NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEAN 413
++ + + + + LSA GI+LLR+ LL I Q S YLARERH+ +L EA
Sbjct: 349 PSSVRDAEGHAREVNLSAKTGDGISLLRDELLK-IAGWQAGAESVYLARERHLIALREAR 407
Query: 414 YYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A +Q + L+L AE+LR + L++I G+ T++DLL IFS+FCIGK
Sbjct: 408 EHLALAAGHADQQ----SQVLDLFAEELRLAQDDLNAITGEFTSDDLLGVIFSRFCIGK 462
>gi|421487150|ref|ZP_15934676.1| tRNA modification GTPase TrmE [Achromobacter piechaudii HLE]
gi|400194585|gb|EJO27595.1| tRNA modification GTPase TrmE [Achromobacter piechaudii HLE]
Length = 450
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/471 (45%), Positives = 305/471 (64%), Gaps = 21/471 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ SPI IAT PGRGG+G++R+SG +L E+V + +++L PR A Y F +
Sbjct: 1 MSAYSPITAIATAPGRGGIGVVRVSGADL---SELVRRLFQRELTPRHAHYLPFKSVDGE 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ IYF+APHSYTGEDV+EL GHGGP +L +L SCL G+ +GLRLA PGEFT+R
Sbjct: 58 LLDEGIAIYFRAPHSYTGEDVLELQGHGGPAVLRRVLDSCLAAGRDLGLRLAEPGEFTRR 117
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+++DL Q EA+ DLI AS+ +AA+ A+ SLSG+FS +N L D++I+LR L+E +
Sbjct: 118 AFLNDRMDLAQAEAVADLIEASSVAAARGAVASLSGEFSARVNDLSDRIIHLRMLVEATL 177
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFPEE + L K L + L +I Q ++ ++R GL+VVL GQPNVGKSSL
Sbjct: 178 DFPEEEIDF-LEKYQARPTLDALTADLSNLIAQARQGVILREGLHVVLAGQPNVGKSSLL 236
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G D+AIVT IAGTTRDK+ + I I+ I DTAG +++ + VE IGI
Sbjct: 237 NALAGDDIAIVTPIAGTTRDKVVQEIHIDGVPLHIVDTAG-------LRETEDTVESIGI 289
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYK 361
RTW E++ +D+I+++QDA + D +I P PV+ V+NK+D + +
Sbjct: 290 ARTWQEIERADVILHLQDA-TQPGDELDAQITARLPPRTPVLKVFNKVDL----LSTAFT 344
Query: 362 NNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIK 421
+ +SA + G++ LR LL++ E SP+LARERH+H+L +A +L+ A +
Sbjct: 345 PAPGELGISAKRGAGLDALRAELLNIAGWNPGAE-SPWLARERHLHALQDAAEHLALAGE 403
Query: 422 IINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q ++ L+L AE+LR H+ LSSI GK T++DLL IFS FCIGK
Sbjct: 404 HAGQD----DRVLDLFAEELRLAHDSLSSITGKFTSDDLLGEIFSSFCIGK 450
>gi|407941465|ref|YP_006857106.1| tRNA modification GTPase TrmE [Acidovorax sp. KKS102]
gi|407899259|gb|AFU48468.1| tRNA modification GTPase TrmE [Acidovorax sp. KKS102]
Length = 473
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/490 (45%), Positives = 307/490 (62%), Gaps = 35/490 (7%)
Query: 1 MLTKN-SPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKN 59
ML ++ PI+ IAT PGRG VGI+R+SGK L ++V+ +C +T LKPR ATY F
Sbjct: 1 MLARHHDPIVAIATAPGRGAVGIVRVSGKGLAALVQALCGRT---LKPREATYLPFRDVQ 57
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSI----------G 109
ID+GL +YF PHSYTGEDV+EL HGGP++L +LL+ CLE G + G
Sbjct: 58 GQAIDQGLALYFPGPHSYTGEDVLELQAHGGPVVLQLLLARCLEAGAATDPATGQPCLPG 117
Query: 110 LRLAMPGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDK 169
LR+A PGEFT+RAFLN+K+DL Q EAI DLI+ASTE+AA+SA SL+G FS I+ L D
Sbjct: 118 LRVAQPGEFTERAFLNDKIDLAQAEAIADLIDASTEAAARSASRSLTGAFSAEIHSLRDA 177
Query: 170 LINLRTLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVL 229
LI+LR L+E + DFPEE + L K D +L +++ L ++Q+ ++ AL+R G+ VV+
Sbjct: 178 LIHLRMLVEATLDFPEEEIDF-LRKADAHGQLSNLQQTLASVMQRARQGALLREGIKVVI 236
Query: 230 IGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKI 289
GQPN GKSSL N+L G+++AIVT IAGTTRDK+ +TIQI I DTAG+ D
Sbjct: 237 AGQPNAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHIIDTAGLRD----- 291
Query: 290 KKNINEVEKIGIERTWVELKNSDIIIYVQD-ARYD------KHTDFDKKIIKNFPMNIPV 342
+ +EVE+IGI R W E+ +D ++++ D +R D D + + + P NIPV
Sbjct: 292 --SSDEVERIGIARAWDEIAGADAVLFLHDLSRQDAPEYVAADADIESALGQKLPKNIPV 349
Query: 343 IYVWNKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLAR 402
I VWNK+D + + A ++LSA G++ LR LLD + Q+ Y+AR
Sbjct: 350 IDVWNKLDCAAGEAAPARPERPA-VHLSARTGQGLDGLRKLLLD-VAGWQSAPEGIYIAR 407
Query: 403 ERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLD 462
RH+ +L + +L A + K L+L+AE+LR LS+I G+ T++DLL
Sbjct: 408 ARHVQALQAVSAHLQEAADQL----KAQGPALDLLAEELRLAQNALSAITGEFTSDDLLG 463
Query: 463 NIFSQFCIGK 472
IFS FCIGK
Sbjct: 464 VIFSSFCIGK 473
>gi|134297397|ref|YP_001121132.1| tRNA modification GTPase TrmE [Burkholderia vietnamiensis G4]
gi|205829126|sp|A4JJ44.1|MNME_BURVG RecName: Full=tRNA modification GTPase MnmE
gi|134140554|gb|ABO56297.1| tRNA modification GTPase trmE [Burkholderia vietnamiensis G4]
Length = 464
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 212/477 (44%), Positives = 309/477 (64%), Gaps = 19/477 (3%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-GKNLWSIVEIVCKK-TKKQLKPRFATYSSFFCK 58
+ T + PI+ IAT GRGG+G++R+S G+ + + + ++L PR A+Y F
Sbjct: 2 LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAAQALSDALCGQRLAPRHASYVPFVDA 61
Query: 59 NNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEF 118
+ +D+G+ +YF APHSYTGE V+EL GHGGPI++ +LL CL+ G+ GLRLA PGEF
Sbjct: 62 HGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEPGEF 121
Query: 119 TKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIE 178
T+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL FS+ I+ L++ +I LR L+E
Sbjct: 122 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDSAFSRQIHALVEDVITLRMLVE 181
Query: 179 FSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKS 238
+ DFPEE + L D +L KI+++L ++ ++ AL+R GL+VVL GQPNVGKS
Sbjct: 182 ATLDFPEEEIDF-LEAADARGKLAKIREQLAHVLGDARQGALLREGLSVVLAGQPNVGKS 240
Query: 239 SLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEK 298
SL N+L G+++AIVT IAGTTRDK+ +TIQ+ I DTAG +++ +EVE+
Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAG-------LRETEDEVER 293
Query: 299 IGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
IGI RTW E++ +D+++++ D+R T D+ I FP +PV+ V NK D +G +
Sbjct: 294 IGIARTWSEIERADVVLHLLDSRTGM-TPEDETIAARFPDGVPVVRVLNKTDLTGVPACV 352
Query: 359 NY---KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYY 415
+ ++ ++LSA + GI++LR LL I Q YLARERH+ +L A +
Sbjct: 353 EHPAAAGDLTEVHLSAKRGDGIDMLRAELLR-IAGWQAGAEGVYLARERHLIALRAAQEH 411
Query: 416 LSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L+ A Q ++L+L AE+LR E+L++I G+ T++DLL IFS+FCIGK
Sbjct: 412 LAQAADHAEQR----AQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464
>gi|344173154|emb|CCA88291.1| GTPase involved in tRNA modification and in thiophene and furan
oxidation [Ralstonia syzygii R24]
Length = 474
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 218/476 (45%), Positives = 306/476 (64%), Gaps = 23/476 (4%)
Query: 4 KNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNII 63
+ PI IAT PGRGG+G++R+SG ++ ++++ VC + L+PR ATY F + N I
Sbjct: 15 RTVPIAAIATAPGRGGIGVVRVSGPDVRAVMQAVCGRL---LQPRQATYLPFLDADGNAI 71
Query: 64 DKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAF 123
D+G+ ++F APHSYTGEDV+EL GHGGP+++ +LLS CL+ G IGLR+A PGEFT+RAF
Sbjct: 72 DRGIALWFPAPHSYTGEDVLELQGHGGPVVMQLLLSRCLQAGHGIGLRVAEPGEFTRRAF 131
Query: 124 LNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDF 183
LN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ ++ L++++I+LR L+E + DF
Sbjct: 132 LNDKLDLAQAEAVADLIEASTEAAARSAARSLDGAFSQAVHALVERVIHLRMLVEATLDF 191
Query: 184 PEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNS 243
PEE + L +D +L I+ +L ++ Q + AL+R GL+VVL GQPNVGKSSL N+
Sbjct: 192 PEEEIDF-LEASDARGQLADIRARLDGVLAQACQGALLREGLHVVLAGQPNVGKSSLLNA 250
Query: 244 LVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIER 303
L G ++AIVT IAGTTRDK+ +TIQI I DTAG+ D +EVE+IGIER
Sbjct: 251 LAGVELAIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTE-------DEVERIGIER 303
Query: 304 TWVELKNSDIIIYVQDAR-YDKH------TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356
TW + +D+++++ DA Y H D +I ++ P +P + V NKID +
Sbjct: 304 TWAAIARADVVLHLLDAADYRAHGLCAEDAAIDARIAEHVPSGVPTLRVINKIDLTDLAV 363
Query: 357 NINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYL 416
++LSA GI LR LL+ I Q YLARERH+ +L A +L
Sbjct: 364 PGRVNAQPPEVWLSARDGSGIESLRAALLE-IAGWQGGGEGLYLARERHLAALRAAKAHL 422
Query: 417 SCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ A +Q ++L+L AE+LR E L+SI G +++DLL IFS+FCIGK
Sbjct: 423 AIATDHADQQ----AQSLDLFAEELRLAQEALNSITGAFSSDDLLGVIFSRFCIGK 474
>gi|344168576|emb|CCA80870.1| GTPase involved in tRNA modification and in thiophene and furan
oxidation [blood disease bacterium R229]
Length = 474
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 216/476 (45%), Positives = 306/476 (64%), Gaps = 23/476 (4%)
Query: 4 KNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNII 63
+ PI IAT PGRGG+G++R+SG ++ ++++ VC + L+ R ATY F + + I
Sbjct: 15 RTVPIAAIATAPGRGGIGVVRVSGPDVRAVMQAVCGRL---LQSRQATYLPFLDADGSAI 71
Query: 64 DKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAF 123
D+G+ ++F APHSYTGEDV+EL GHGGP+++ +LLS CL+ G IGLR+A PGEFT+RAF
Sbjct: 72 DRGIALWFPAPHSYTGEDVLELQGHGGPVVMQLLLSRCLQAGHGIGLRVAEPGEFTRRAF 131
Query: 124 LNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDF 183
LN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ ++ L++++I+LR L+E + DF
Sbjct: 132 LNDKLDLAQAEAVADLIEASTEAAARSAARSLDGAFSQAVHALVERVIHLRMLVEATLDF 191
Query: 184 PEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNS 243
PEE + L +D +L I+ +L ++ Q ++ AL+R GL+VVL GQPNVGKSSL N+
Sbjct: 192 PEEEIDF-LEASDARGQLADIRARLDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNA 250
Query: 244 LVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIER 303
L G+++AIVT IAGTTRDK+ +TIQI I DTAG+ D +EVE+IGIER
Sbjct: 251 LAGAELAIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTE-------DEVERIGIER 303
Query: 304 TWVELKNSDIIIYVQDAR-YDKH------TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356
TW + +D+++++ DA Y H D +I + P +P + V NKID +G
Sbjct: 304 TWAAIARADVVLHLLDAADYRAHGLCAEDAAIDARIAGHVPSGVPTLRVINKIDLTGLVV 363
Query: 357 NINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYL 416
++LSA GI LR LL+ I Q YLARERH+ +L A +L
Sbjct: 364 PGRVDAQPPEVWLSARDGSGIESLRAALLE-IAGWQGGGEGLYLARERHLAALRAAKAHL 422
Query: 417 SCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ +Q ++L+L AE+LR E L+SI G +++DLL IFS+FCIGK
Sbjct: 423 AIGADHADQQ----AQSLDLFAEELRLAQEALNSITGAFSSDDLLGVIFSRFCIGK 474
>gi|416980469|ref|ZP_11937985.1| tRNA modification GTPase TrmE [Burkholderia sp. TJI49]
gi|325519719|gb|EGC99039.1| tRNA modification GTPase TrmE [Burkholderia sp. TJI49]
Length = 464
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 216/480 (45%), Positives = 313/480 (65%), Gaps = 25/480 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-GKN----LWSIVEIVCKKTKKQLKPRFATYSSF 55
+ T + PI+ IAT GRGG+G++R+S G+ +++ +C + L PR A+Y F
Sbjct: 2 LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQP---LAPRHASYVPF 58
Query: 56 FCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMP 115
+ +D+G+ +YF APHSYTGE V+EL GHGGPI++ +LL CL+ G+ GLRLA P
Sbjct: 59 LDAHGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEP 118
Query: 116 GEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRT 175
GEFT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L+D +INLR
Sbjct: 119 GEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVINLRM 178
Query: 176 LIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235
L+E + DFPEE + L D +L +I+++L ++ ++ AL+R GL+VVL GQPNV
Sbjct: 179 LVEATLDFPEEEIDF-LEAADARGKLARIREQLAHVLGDARQGALLREGLSVVLAGQPNV 237
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKSSL N L G+++AIVT IAGTTRDK+ +TIQ+ I DTAG +++ +E
Sbjct: 238 GKSSLLNVLAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAG-------LRETEDE 290
Query: 296 VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355
VE+IGI RTW E++ +D+++++ D+R D D I FP +PV+ V NK D +G
Sbjct: 291 VERIGIARTWSEIERADVVLHLLDSRTGMTAD-DVAIAARFPDGVPVVRVLNKTDLTGVP 349
Query: 356 KNINY---KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEA 412
++ + + ++ +++LSA + GI+LLR LL I Q YLARERH+ +L A
Sbjct: 350 ASVEHPAAEGDLTDVHLSAKRGDGIDLLRAELLR-IAGWQAGAEGVYLARERHLIALRAA 408
Query: 413 NYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A Q ++L+L AE+LR E+L++I G+ T++DLL IFS+FCIGK
Sbjct: 409 QAHLAHAADHAEQR----AQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464
>gi|241665032|ref|YP_002983392.1| tRNA modification GTPase TrmE [Ralstonia pickettii 12D]
gi|240867059|gb|ACS64720.1| tRNA modification GTPase TrmE [Ralstonia pickettii 12D]
Length = 481
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 215/473 (45%), Positives = 305/473 (64%), Gaps = 23/473 (4%)
Query: 7 PIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKG 66
PI IAT PGRGG+G++R+SG ++ ++++ VC + L PR ATY F N ID+G
Sbjct: 25 PIAAIATAPGRGGIGVVRVSGPDVRAVMQAVCGRV---LTPRQATYLPFLDAEGNAIDRG 81
Query: 67 LVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNN 126
+ ++F APHSYTGEDV+EL GHGGP+++ +LL CL G+ IGLR+A PGEFT+RAFLN+
Sbjct: 82 IALWFPAPHSYTGEDVLELQGHGGPVVMQLLLQRCLTAGREIGLRVAEPGEFTRRAFLND 141
Query: 127 KLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEE 186
K+DL Q EA+ DLI ASTE+AA+SA SL G FS+ ++ L++++I+LR L+E + DFPEE
Sbjct: 142 KMDLAQAEAVADLIEASTEAAARSAARSLEGAFSQAVHALVERVIHLRMLVEATLDFPEE 201
Query: 187 NQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVG 246
+ L +D +L I+ + ++ Q ++ AL+R GL+VVL GQPNVGKSSL N+L G
Sbjct: 202 EIDF-LEASDARGQLAGIRTAVDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNALAG 260
Query: 247 SDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWV 306
+++AIVT IAGTTRDK+ +TIQI I DTAG+ D +EVE+IGIERTW
Sbjct: 261 AELAIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTE-------DEVERIGIERTWA 313
Query: 307 ELKNSDIIIYVQDAR-------YDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNIN 359
+ +D+++++ DA + T D +I ++ P +P + V NKID SG
Sbjct: 314 AIARADVVLHLLDATDYRAKGLSPEDTAIDARIAEHVPAGVPTLRVINKIDLSGVAIPGR 373
Query: 360 YKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCA 419
++LSA +G+ LLR LL+ I Q YLARERH+ +L A +L+ A
Sbjct: 374 VDAEPPEVWLSARDGLGVELLRAALLE-IAGWQGGGEGLYLARERHLAALRTAREHLATA 432
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ ++L+L AE+LR E L+SI G +++DLL IFS+FCIGK
Sbjct: 433 ----AEHAAQQAQSLDLFAEELRLAQEALNSITGAFSSDDLLGVIFSRFCIGK 481
>gi|238028966|ref|YP_002913197.1| tRNA modification GTPase TrmE [Burkholderia glumae BGR1]
gi|237878160|gb|ACR30493.1| TRNA modification GTPase TrmE [Burkholderia glumae BGR1]
Length = 472
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 224/486 (46%), Positives = 316/486 (65%), Gaps = 28/486 (5%)
Query: 1 MLTKNS-PIIGIATPPGRGGVGIIRLS-GKNLWSIVEIVCKKTKKQL-KPRFATYSSFFC 57
MLT +S PI+ IAT PGRGG+G++R+S G+ S E + + QL R A+Y F
Sbjct: 1 MLTTDSDPIVAIATAPGRGGIGVVRISFGRAGASAAEALMQAVCGQLLAARHASYVPFLD 60
Query: 58 KNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGE 117
+D+G+ + F AP+SYTGE V+EL GHGGPI+L +LL CL+ G+ G+RLA PGE
Sbjct: 61 GAGEALDRGIALNFPAPNSYTGEHVLELQGHGGPIVLQLLLQRCLDAGRGHGVRLAEPGE 120
Query: 118 FTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLI 177
FT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ ++ L+D +I LR L+
Sbjct: 121 FTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDVHALVDDVIGLRMLV 180
Query: 178 EFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGK 237
E + DFPEE + L D +L +I+++L +++ ++ AL+R GL+VVL GQPNVGK
Sbjct: 181 EATLDFPEEEIDF-LEAADARGKLARIRERLARVLGDARQGALLREGLSVVLAGQPNVGK 239
Query: 238 SSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVE 297
SSL N+L G+++AIVT IAGTTRDK+ +TIQI I DTAG +++ +EVE
Sbjct: 240 SSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHIVDTAG-------LRETEDEVE 292
Query: 298 KIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYS----- 352
KIGI RTW E++ +D+++++ DAR D D+ I FP +PV+ V+NK D +
Sbjct: 293 KIGIARTWGEIERADVVLHLLDAREGLGAD-DRAIAGRFPAGVPVVRVFNKTDLTDAPPA 351
Query: 353 -----GH-QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHI 406
GH Q + +++ + LSA + GI+LLR LL I Q S YLARERH+
Sbjct: 352 VAHLGGHAQADAAGGLDLSEVRLSAKRGDGIDLLRAELLR-IAGWQAGAESVYLARERHL 410
Query: 407 HSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFS 466
+L A +L+ + +++N E L+L AE+LR E+L+SI G+ T++DLL IFS
Sbjct: 411 IALRAAQAHLA---QAAGHADQNAEA-LDLFAEELRLAQEQLNSITGEFTSDDLLGVIFS 466
Query: 467 QFCIGK 472
+FCIGK
Sbjct: 467 RFCIGK 472
>gi|221069752|ref|ZP_03545857.1| tRNA modification GTPase TrmE [Comamonas testosteroni KF-1]
gi|220714775|gb|EED70143.1| tRNA modification GTPase TrmE [Comamonas testosteroni KF-1]
Length = 475
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 221/492 (44%), Positives = 308/492 (62%), Gaps = 37/492 (7%)
Query: 1 MLTK-NSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKN 59
ML + N PI IAT PGRG VGI+R+SGK L ++V +C + +LKPR ATY F
Sbjct: 1 MLPRHNDPIAAIATAPGRGAVGIVRVSGKGLAALVRTLCGR---ELKPREATYLPFRDAG 57
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKS---------IGL 110
+ ID GL IYF PHSYTGEDV+EL HGGP++L +LL+ CLE +S GL
Sbjct: 58 GSPIDHGLAIYFPGPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAQSGSEDGRPVLTGL 117
Query: 111 RLAMPGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKL 170
RLA PGEFT+RAFLN+K+DL Q EAI DLI+ASTE+AA+SA SLSG FS+ I++L D L
Sbjct: 118 RLAQPGEFTERAFLNDKIDLAQAEAIADLIDASTEAAARSASRSLSGAFSQEIHVLRDAL 177
Query: 171 INLRTLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLI 230
++LR L+E + DFPEE + L K D F +L +++ ++ ++ + + AL+R G+ VV+
Sbjct: 178 VHLRMLVEATLDFPEEEIDF-LQKADAFGQLERLRAQVTAVLARAHQGALLREGIKVVIA 236
Query: 231 GQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIK 290
GQPN GKSSL N+L G+++AIVT IAGTTRDK+ +TIQI + DTAG+ D +
Sbjct: 237 GQPNAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRDSD---- 292
Query: 291 KNINEVEKIGIERTWVELKNSDIIIYVQD-ARYDK------HTDFDKKIIKNFPMNIPVI 343
+EVE+IGI R W E+ +D ++++ D R ++ D + + P +PVI
Sbjct: 293 ---DEVERIGIARAWDEIAAADAVLFLHDLTRVEQADYAAADADIARTLQGRLPAQVPVI 349
Query: 344 YVWNKIDYSGH--QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLA 401
+VWNK D + Q + N I LSA G++ LR LL+ + Q+ YLA
Sbjct: 350 HVWNKTDMAAADVQSRHTAQLNAQQIALSARTGDGLDALRKRLLE-VAGWQSAPEGLYLA 408
Query: 402 RERHIHSLNEANYYLSCA-IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDL 460
R RH+ +L + +L A ++ QS +L+L+AE+LR L+SI G+ +++DL
Sbjct: 409 RARHVEALQAVDVHLEMADAQLAAQS-----AHLDLLAEELRLAQLSLNSITGEFSSDDL 463
Query: 461 LDNIFSQFCIGK 472
L IFS FCIGK
Sbjct: 464 LGVIFSSFCIGK 475
>gi|187930816|ref|YP_001901303.1| tRNA modification GTPase TrmE [Ralstonia pickettii 12J]
gi|309780188|ref|ZP_07674939.1| tRNA modification GTPase TrmE [Ralstonia sp. 5_7_47FAA]
gi|404394786|ref|ZP_10986589.1| tRNA modification GTPase mnmE [Ralstonia sp. 5_2_56FAA]
gi|187727706|gb|ACD28871.1| tRNA modification GTPase TrmE [Ralstonia pickettii 12J]
gi|308920891|gb|EFP66537.1| tRNA modification GTPase TrmE [Ralstonia sp. 5_7_47FAA]
gi|348613851|gb|EGY63420.1| tRNA modification GTPase mnmE [Ralstonia sp. 5_2_56FAA]
Length = 481
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 214/473 (45%), Positives = 303/473 (64%), Gaps = 23/473 (4%)
Query: 7 PIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKG 66
PI IAT PGRGG+G++R+SG ++ +++ VC + L PR ATY F + N ID+G
Sbjct: 25 PIAAIATAPGRGGIGVVRVSGPDVRAVMHAVCGRL---LTPRQATYLPFLDADGNAIDRG 81
Query: 67 LVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNN 126
+ ++F APHSYTGEDV+EL GHGGP+++ +LL CL G+ IGLR+A PGEFT+RAFLN+
Sbjct: 82 IALWFPAPHSYTGEDVLELQGHGGPVVMQLLLQRCLTAGREIGLRVAEPGEFTRRAFLND 141
Query: 127 KLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEE 186
K+DL Q EA+ DLI ASTE+AA+SA SL G FS+ ++ L++++I+LR L+E + DFPEE
Sbjct: 142 KMDLAQAEAVADLIEASTEAAARSAARSLDGAFSQTVHALVERVIHLRMLVEATLDFPEE 201
Query: 187 NQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVG 246
+ L +D +L I+ + ++ Q ++ AL+R GL+VVL GQPNVGKSSL N+L G
Sbjct: 202 EIDF-LEASDARGQLANIRTAVDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNALAG 260
Query: 247 SDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWV 306
+++AIVT IAGTTRDK+ +TIQI I DTAG+ D +EVE+IGIERTW
Sbjct: 261 AELAIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTE-------DEVERIGIERTWA 313
Query: 307 ELKNSDIIIYVQDAR-------YDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNIN 359
+ +D+++++ DA + T D +I ++ P +P + V NKID SG
Sbjct: 314 AIARADVVLHLLDATDYRAKGLSPEDTAIDARIAEHVPAGVPTLRVINKIDLSGVAIPCR 373
Query: 360 YKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCA 419
++LSA +G+ LLR LL+ I Q YLARERH+ +L A +L
Sbjct: 374 VDAEPPEVWLSARDGLGVELLRAALLE-IAGWQGGGEGLYLARERHLAALRTAREHL--- 429
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ ++L+L AE+LR E L+SI G +++DLL IFS+FCIGK
Sbjct: 430 -ATAAEHAAQQAQSLDLFAEELRLAQEALNSITGAFSSDDLLGVIFSRFCIGK 481
>gi|163859322|ref|YP_001633620.1| tRNA modification GTPase TrmE [Bordetella petrii DSM 12804]
gi|205829119|sp|A9IJ97.1|MNME_BORPD RecName: Full=tRNA modification GTPase MnmE
gi|163263050|emb|CAP45353.1| putative tRNA modification GTPase [Bordetella petrii]
Length = 452
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/470 (44%), Positives = 299/470 (63%), Gaps = 21/470 (4%)
Query: 3 TKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNI 62
+ + PI IAT PGRGG+G++R+SG +L ++ + ++L PR A Y F +
Sbjct: 4 STHVPIAAIATAPGRGGIGVVRISGPDLSALAR---RLFGRELTPRHAHYLPFTAETGEH 60
Query: 63 IDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRA 122
+D+G+ +YF+AP SYTGEDV+EL GHGGP +L +L CL+ G +G+RLA PGEFT+RA
Sbjct: 61 LDEGIALYFRAPQSYTGEDVLELQGHGGPAVLRRILERCLQAGADLGVRLAEPGEFTRRA 120
Query: 123 FLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFD 182
FLN+++DL Q EA+ DLI+AS+ +AA+ AM SLSG+FS +N L D++++LR L+E + D
Sbjct: 121 FLNDRMDLAQAEAVADLIDASSVAAARGAMASLSGEFSARVNALSDRIVHLRMLVEATLD 180
Query: 183 FPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFN 242
FPEE + L K L + L +I Q ++ ++R GL+VVL G+PNVGKSSL N
Sbjct: 181 FPEEEIDF-LEKYQARPTLQALAADLATLIAQARQGVILREGLHVVLAGKPNVGKSSLLN 239
Query: 243 SLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302
+L G D+AIVT IAGTTRDK+ + I I+ I DTAG+ D + + VE IGI
Sbjct: 240 ALAGDDIAIVTPIAGTTRDKVVQEIHIDGVPLHIVDTAGLRDTD-------DTVESIGIA 292
Query: 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKN 362
RTW E++ +D+I+++QDA + D +I+ P P++ V+NK+D + ++
Sbjct: 293 RTWKEIERADVILHLQDA-TQPADELDAQIVARLPARTPLLTVFNKVDL----LDQPFQA 347
Query: 363 NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKI 422
+ +SA + G++ LR LL L E SP+LARERH+H+L A +L A +
Sbjct: 348 QAGQLGISAREGAGLDELRARLLALAGWNPGAE-SPWLARERHVHALQRAAEHLEAATEH 406
Query: 423 INQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q ++ L+L AE+LR H+ LSSI GK T++DLL IFS FCIGK
Sbjct: 407 AAQD----DRVLDLFAEELRLAHDSLSSITGKFTSDDLLGEIFSSFCIGK 452
>gi|330818728|ref|YP_004362433.1| tRNA modification GTPase TrmE [Burkholderia gladioli BSR3]
gi|327371121|gb|AEA62477.1| tRNA modification GTPase TrmE [Burkholderia gladioli BSR3]
Length = 468
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 214/480 (44%), Positives = 312/480 (65%), Gaps = 29/480 (6%)
Query: 5 NSPIIGIATPPGRGGVGIIRLS-GKNLWS----IVEIVCKKTKKQLKPRFATYSSFFCKN 59
+ PI+ IAT GRGG+G++R+S G+ + ++ VC + L PR A+Y F
Sbjct: 6 SDPIVAIATAAGRGGIGVVRVSFGRAGAAAAEALMRAVCGQV---LAPRHASYVPFLDAA 62
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFT 119
+D+G+ +YF AP+SYTGE V+EL GHGGPI+L ++L CL+ G+ LRLA PGEFT
Sbjct: 63 GAALDRGIALYFTAPNSYTGEHVLELQGHGGPIVLQLVLQRCLDAGREHALRLAEPGEFT 122
Query: 120 KRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEF 179
+RAFLN+KLDL Q EA+ DLI ASTE+A +SA SL G FS+ I+ L++ +I LR L+E
Sbjct: 123 RRAFLNDKLDLAQAEAVADLIEASTEAAVRSAGRSLDGVFSRDIHALVEDVIGLRMLVEA 182
Query: 180 SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
+ DFPEE + L D +L +I+++L +++ ++ AL+R G++VVL GQPNVGKSS
Sbjct: 183 TLDFPEEEIDF-LEAADARGKLARIRERLAQVLGDARQGALLREGMSVVLAGQPNVGKSS 241
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N+L G+++AIVT IAGTTRDK+ +TIQ+ I DTAG +++ +EVEKI
Sbjct: 242 LLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAG-------LRETEDEVEKI 294
Query: 300 GIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNIN 359
GI RTW E++ +D+++++ DA+ T+ D+ I + FP +PV+ V+NK D SG ++
Sbjct: 295 GIARTWGEIERADVVLHLLDAQTGLGTE-DRAIAERFPAGVPVVRVFNKTDLSGEAASVT 353
Query: 360 YKN-------NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEA 412
+ ++ + LSA + GI+LLR LL I Q S YLARERH+ +L A
Sbjct: 354 HPGSGAAGEVDLTELRLSAKQGDGIDLLRAELLR-IAGWQAGAESVYLARERHLVALRAA 412
Query: 413 NYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A +Q+ + L+L AE+LR E+L+SI G+ T++DLL IFS+FCIGK
Sbjct: 413 QEHLAQAADHADQN----AQALDLFAEELRLAQEQLNSITGEFTSDDLLGVIFSRFCIGK 468
>gi|418528261|ref|ZP_13094211.1| tRNA modification GTPase TrmE [Comamonas testosteroni ATCC 11996]
gi|371454637|gb|EHN67639.1| tRNA modification GTPase TrmE [Comamonas testosteroni ATCC 11996]
Length = 475
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 221/492 (44%), Positives = 307/492 (62%), Gaps = 37/492 (7%)
Query: 1 MLTK-NSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKN 59
ML + N PI IAT PGRG VGI+R+SGK + ++V +C K LKPR ATY F
Sbjct: 1 MLPRHNDPIAAIATAPGRGAVGIVRVSGKGIAALVRTLCGKA---LKPREATYLPFRDAG 57
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKS---------IGL 110
+ ID GL IYF PHSYTGEDV+EL HGGP++L +LL+ CLE +S GL
Sbjct: 58 GSPIDHGLAIYFPGPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAQSANEDGKPVLTGL 117
Query: 111 RLAMPGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKL 170
RLA PGEFT+RAFLN+K+DL Q EAI DLI+ASTE+AA+SA SLSG FS+ I++L D L
Sbjct: 118 RLAQPGEFTERAFLNDKIDLAQAEAIADLIDASTEAAARSASRSLSGAFSQEIHVLRDAL 177
Query: 171 INLRTLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLI 230
++LR L+E + DFPEE + L K D F +L +++ ++ ++ + + AL+R G+ VV+
Sbjct: 178 VHLRMLVEATLDFPEEEIDF-LQKADAFGQLERLRAQVTAVLARAHQGALLREGIKVVIA 236
Query: 231 GQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIK 290
GQPN GKSSL N+L G+++AIVT IAGTTRDK+ +TIQI + DTAG+ D +
Sbjct: 237 GQPNAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRDSD---- 292
Query: 291 KNINEVEKIGIERTWVELKNSDIIIYVQD-ARYDK------HTDFDKKIIKNFPMNIPVI 343
+EVE+IGI R W E+ +D ++++ D R ++ D + + P +PVI
Sbjct: 293 ---DEVERIGIARAWDEIAAADAVLFLHDLTRVEQADYAAADADIARTLQDRLPAQVPVI 349
Query: 344 YVWNKIDYSGH--QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLA 401
+VWNK D + Q + N I LSA G++ LR LL+ + Q+ YLA
Sbjct: 350 HVWNKTDMAAADVQSRHTAQLNAEQIALSARTGDGLDALRKRLLE-VAGWQSAPEGLYLA 408
Query: 402 RERHIHSLNEANYYLSCAI-KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDL 460
R RH+ +L + +L A ++ QS +L+L+AE+LR L+SI G+ +++DL
Sbjct: 409 RARHVEALQAVDAHLEMADEQLAAQS-----AHLDLLAEELRLAQLSLNSITGEFSSDDL 463
Query: 461 LDNIFSQFCIGK 472
L IFS FCIGK
Sbjct: 464 LGVIFSSFCIGK 475
>gi|427817298|ref|ZP_18984361.1| putative tRNA modification GTPase [Bordetella bronchiseptica D445]
gi|410568298|emb|CCN16331.1| putative tRNA modification GTPase [Bordetella bronchiseptica D445]
Length = 450
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/457 (45%), Positives = 295/457 (64%), Gaps = 21/457 (4%)
Query: 16 GRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPH 75
GRGG+G++R+SG +L E+ + + L PR A Y F + +ID+GL IYF+APH
Sbjct: 15 GRGGIGVVRISGPDL---AELAQRLFGRPLTPRHAHYLPFRAADGEVIDEGLAIYFRAPH 71
Query: 76 SYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVEA 135
SYTGEDV+EL GHGGP +L +L+ CL+ G +GLR A PGEFT+RAFLN +LDL Q EA
Sbjct: 72 SYTGEDVLELQGHGGPAVLRRILARCLQAGHDLGLRPAEPGEFTRRAFLNERLDLAQAEA 131
Query: 136 IIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELILNKN 195
+ DLI+AS+E+AA+ AM SLSG+FS+ +N L D++I+LR L+E + DFPEE + L K
Sbjct: 132 VADLIDASSEAAARGAMASLSGEFSQRVNDLSDRIIHLRMLVEATLDFPEEEIDF-LEKY 190
Query: 196 DFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSI 255
L + L +I Q ++ ++R GL+VVL G+PNVGKSSL N+L G D+AIVT I
Sbjct: 191 QARPTLQALTHDLDTLIAQARQGVILREGLHVVLAGKPNVGKSSLLNALAGDDIAIVTPI 250
Query: 256 AGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIII 315
AGTTRDK+ + I I+ I DTAG+ D + + VE IGIERTW E++ +D+I+
Sbjct: 251 AGTTRDKVVQEIHIDGVPLHIVDTAGLRDTD-------DAVESIGIERTWKEIERADVIL 303
Query: 316 YVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKRI 375
++QD D +I++ P PV+ V+NK+D + ++ ++ +SA I
Sbjct: 304 HLQDVTQPP-DHLDAQIVRRLPARTPVLNVFNKVDL----LDAAFQGQPDSLAISARGGI 358
Query: 376 GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLE 435
G++ LR LL L E SP+LARERH+H+L +A +L +I + + ++ L+
Sbjct: 359 GLDALRQRLLQLAGWNPGAE-SPWLARERHLHALQQAAQHL----EIATEHAREDDRVLD 413
Query: 436 LIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L AE+LR HE L+ I GK T++DLL IFS FCIGK
Sbjct: 414 LFAEELRLAHEALTGITGKFTSDDLLGEIFSSFCIGK 450
>gi|264680930|ref|YP_003280840.1| tRNA modification GTPase TrmE [Comamonas testosteroni CNB-2]
gi|262211446|gb|ACY35544.1| tRNA modification GTPase TrmE [Comamonas testosteroni CNB-2]
Length = 475
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 221/492 (44%), Positives = 308/492 (62%), Gaps = 37/492 (7%)
Query: 1 MLTK-NSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKN 59
ML + N PI IAT PGRG VGI+R+SGK + ++V +C K +LKPR ATY F
Sbjct: 1 MLPRHNDPIAAIATAPGRGAVGIVRVSGKGIAALVRTLCGK---ELKPREATYLPFRDAG 57
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKS---------IGL 110
+ ID GL IYF PHSYTGEDV+EL HGGP++L +LL+ CLE +S GL
Sbjct: 58 GSPIDHGLAIYFPGPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAQSANEDGKPVLTGL 117
Query: 111 RLAMPGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKL 170
RLA PGEFT+RAFLN+K+DL Q EAI DLI+ASTE+AA+SA SLSG FS+ I++L D L
Sbjct: 118 RLAQPGEFTERAFLNDKIDLAQAEAIADLIDASTEAAARSASRSLSGAFSQEIHVLRDAL 177
Query: 171 INLRTLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLI 230
++LR L+E + DFPEE + L K D F +L +++ ++ ++ + + AL+R G+ VV+
Sbjct: 178 VHLRMLVEATLDFPEEEIDF-LQKADAFGQLERLRHQVTAVLARAHQGALLREGIKVVIA 236
Query: 231 GQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIK 290
GQPN GKSSL N+L G+++AIVT IAGTTRDK+ +TIQI + DTAG+ D +
Sbjct: 237 GQPNAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRDSD---- 292
Query: 291 KNINEVEKIGIERTWVELKNSDIIIYVQD-ARYDK------HTDFDKKIIKNFPMNIPVI 343
+EVE+IGI R W E+ +D ++++ D R ++ D + + P +PVI
Sbjct: 293 ---DEVERIGIARAWDEIAAADAVLFLHDLTRVEQADYAAADADIARTLQDKLPAQVPVI 349
Query: 344 YVWNKIDYSGH--QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLA 401
+VWNK D + Q + N I LSA G++ LR LL+ + Q+ YLA
Sbjct: 350 HVWNKTDMAAADVQSRHTAQLNAEQIALSARTGDGLDALRKRLLE-VAGWQSAPEGLYLA 408
Query: 402 RERHIHSLNEANYYLSCAI-KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDL 460
R RH+ +L + +L A ++ QS +L+L+AE+LR L+SI G+ +++DL
Sbjct: 409 RARHVEALQAVDAHLEMADEQLAAQS-----AHLDLLAEELRLAQLSLNSITGEFSSDDL 463
Query: 461 LDNIFSQFCIGK 472
L IFS FCIGK
Sbjct: 464 LGVIFSSFCIGK 475
>gi|427823032|ref|ZP_18990094.1| putative tRNA modification GTPase [Bordetella bronchiseptica Bbr77]
gi|410588297|emb|CCN03354.1| putative tRNA modification GTPase [Bordetella bronchiseptica Bbr77]
Length = 450
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 209/457 (45%), Positives = 295/457 (64%), Gaps = 21/457 (4%)
Query: 16 GRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPH 75
GRGG+G++R+SG +L E+ + + L PR A Y F + +ID+GL IYF+APH
Sbjct: 15 GRGGIGVVRISGPDL---AELAQRLFGRPLTPRHAHYLPFRAADGEVIDEGLAIYFRAPH 71
Query: 76 SYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVEA 135
SYTGEDV+EL GHGGP +L +L+ CL+ G +GLR A PGEFT+RAFLN +LDL Q EA
Sbjct: 72 SYTGEDVLELQGHGGPAVLRRILARCLQAGHDLGLRPAEPGEFTRRAFLNERLDLAQAEA 131
Query: 136 IIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELILNKN 195
+ DLI+AS+E+AA+ AM SLSG+FS+ +N L D++I+LR L+E + DFPEE + L K
Sbjct: 132 VADLIDASSEAAARGAMASLSGEFSQRVNDLSDRIIHLRMLVEATLDFPEEEIDF-LEKY 190
Query: 196 DFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSI 255
L + L +I Q ++ ++R GL+VVL G+PNVGKSSL N+L G D+AIVT I
Sbjct: 191 QARPTLQALTHGLDTLIAQARQGVILREGLHVVLAGKPNVGKSSLLNALAGDDIAIVTPI 250
Query: 256 AGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIII 315
AGTTRDK+ + I I+ I DTAG+ D + + VE IGIERTW E++ +D+I+
Sbjct: 251 AGTTRDKVVQEIHIDGVPLHIVDTAGLRDTD-------DAVESIGIERTWKEIERADVIL 303
Query: 316 YVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKRI 375
++QD D +I++ P PV+ V+NK+D + ++ ++ +SA I
Sbjct: 304 HLQDVTQPP-DHLDAQIVRRLPARTPVLNVFNKVDL----LDAAFQGQPDSLAISARGGI 358
Query: 376 GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLE 435
G++ LR LL L E SP+LARERH+H+L +A +L +I + + ++ L+
Sbjct: 359 GLDALRQRLLQLAGWNPGAE-SPWLARERHLHALQQAAQHL----EIATEHAREDDRVLD 413
Query: 436 LIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L AE+LR HE L+ I GK T++DLL IFS FCIGK
Sbjct: 414 LFAEELRLAHEALTGITGKFTSDDLLGEIFSSFCIGK 450
>gi|410422430|ref|YP_006902879.1| tRNA modification GTPase [Bordetella bronchiseptica MO149]
gi|408449725|emb|CCJ61417.1| putative tRNA modification GTPase [Bordetella bronchiseptica MO149]
Length = 450
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 209/457 (45%), Positives = 295/457 (64%), Gaps = 21/457 (4%)
Query: 16 GRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPH 75
GRGG+G++R+SG +L E+ + + L PR A Y F + +ID+GL IYF+APH
Sbjct: 15 GRGGIGVVRISGPDL---AELAQRLFGRPLTPRHAHYLPFRAADGEVIDEGLAIYFRAPH 71
Query: 76 SYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVEA 135
SYTGEDV+EL GHGGP +L +L+ CL+ G +GLR A PGEFT+RAFLN +LDL Q EA
Sbjct: 72 SYTGEDVLELQGHGGPAVLRRILARCLQAGHDLGLRPAEPGEFTRRAFLNERLDLAQAEA 131
Query: 136 IIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELILNKN 195
+ DLI+AS+E+AA+ AM SLSG+FS+ +N L D++I+LR L+E + DFPEE + L K
Sbjct: 132 VADLIDASSEAAARGAMASLSGEFSQRVNDLSDRIIHLRMLVEATLDFPEEEIDF-LEKY 190
Query: 196 DFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSI 255
L + L +I Q ++ ++R GL+VVL G+PNVGKSSL N+L G D+AIVT I
Sbjct: 191 QARPTLQALTHDLDTLIAQARQGVILREGLHVVLAGKPNVGKSSLLNALAGDDIAIVTPI 250
Query: 256 AGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIII 315
AGTTRDK+ + I I+ I DTAG+ D + + VE IGIERTW E++ +D+I+
Sbjct: 251 AGTTRDKVVQEIHIDGVPLHIVDTAGLRDTD-------DAVESIGIERTWKEIERADVIL 303
Query: 316 YVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKRI 375
++QD D +I++ P PV+ V+NK+D + ++ ++ +SA I
Sbjct: 304 HLQDVTQPP-DHLDAQIVRRLPARTPVLNVFNKVDL----LDAAFQGQPDSLAISARGGI 358
Query: 376 GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLE 435
G++ LR LL L E SP+LARERH+H+L +A +L +I + + ++ L+
Sbjct: 359 GLDALRRRLLQLAGWNPGAE-SPWLARERHLHALQQAAQHL----EIATEHAREDDRVLD 413
Query: 436 LIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L AE+LR HE L+ I GK T++DLL IFS FCIGK
Sbjct: 414 LFAEELRLAHEALTGITGKFTSDDLLGEIFSSFCIGK 450
>gi|53717720|ref|YP_106706.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei K96243]
gi|53724896|ref|YP_104852.1| tRNA modification GTPase TrmE [Burkholderia mallei ATCC 23344]
gi|126440482|ref|YP_001057151.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 668]
gi|126454342|ref|YP_001064396.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1106a]
gi|134281363|ref|ZP_01768071.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 305]
gi|167717471|ref|ZP_02400707.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei DM98]
gi|167736506|ref|ZP_02409280.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 14]
gi|167813583|ref|ZP_02445263.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 91]
gi|167822125|ref|ZP_02453596.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 9]
gi|167843730|ref|ZP_02469238.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei B7210]
gi|167892208|ref|ZP_02479610.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 7894]
gi|167900719|ref|ZP_02487924.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei NCTC
13177]
gi|167908938|ref|ZP_02496029.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 112]
gi|167916978|ref|ZP_02504069.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei BCC215]
gi|217423934|ref|ZP_03455434.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 576]
gi|226193161|ref|ZP_03788771.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei Pakistan
9]
gi|237810287|ref|YP_002894738.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei MSHR346]
gi|242317582|ref|ZP_04816598.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1106b]
gi|254184155|ref|ZP_04890746.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1655]
gi|254194641|ref|ZP_04901072.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei S13]
gi|254298579|ref|ZP_04966030.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 406e]
gi|386860210|ref|YP_006273159.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1026b]
gi|403516765|ref|YP_006650898.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei BPC006]
gi|418375507|ref|ZP_12965587.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 354a]
gi|418537438|ref|ZP_13103078.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1026a]
gi|418539577|ref|ZP_13105168.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1258a]
gi|418545737|ref|ZP_13110984.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1258b]
gi|418552151|ref|ZP_13117043.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 354e]
gi|81380766|sp|Q63YV9.1|MNME_BURPS RecName: Full=tRNA modification GTPase MnmE
gi|81603688|sp|Q62EM6.1|MNME_BURMA RecName: Full=tRNA modification GTPase MnmE
gi|205829148|sp|A3NPX5.1|MNME_BURP0 RecName: Full=tRNA modification GTPase MnmE
gi|205829149|sp|A3N480.1|MNME_BURP6 RecName: Full=tRNA modification GTPase MnmE
gi|205829160|sp|A1V7D3.2|MNME_BURMS RecName: Full=tRNA modification GTPase MnmE
gi|205829167|sp|A3MS17.2|MNME_BURM7 RecName: Full=tRNA modification GTPase MnmE
gi|205829168|sp|A2S8D8.2|MNME_BURM9 RecName: Full=tRNA modification GTPase MnmE
gi|52208134|emb|CAH34064.1| putative tRNA modification GTPase [Burkholderia pseudomallei
K96243]
gi|52428319|gb|AAU48912.1| tRNA modification GTPase TrmE [Burkholderia mallei ATCC 23344]
gi|126219975|gb|ABN83481.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 668]
gi|126227984|gb|ABN91524.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1106a]
gi|134247030|gb|EBA47116.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 305]
gi|157808553|gb|EDO85723.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 406e]
gi|169651391|gb|EDS84084.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei S13]
gi|184214687|gb|EDU11730.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1655]
gi|217392997|gb|EEC33019.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 576]
gi|225934761|gb|EEH30738.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei Pakistan
9]
gi|237505603|gb|ACQ97921.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei MSHR346]
gi|242140821|gb|EES27223.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1106b]
gi|385350147|gb|EIF56699.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1026a]
gi|385364331|gb|EIF70049.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1258a]
gi|385366400|gb|EIF72022.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1258b]
gi|385373612|gb|EIF78628.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 354e]
gi|385378295|gb|EIF82770.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 354a]
gi|385657338|gb|AFI64761.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1026b]
gi|403072409|gb|AFR13989.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei BPC006]
Length = 467
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 222/483 (45%), Positives = 311/483 (64%), Gaps = 28/483 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-----GKNLWSIVEIVCKKTKKQLKPRFATYSSF 55
+ T + PI+ IAT GRGG+G++RLS ++ + +C +L PR A+Y F
Sbjct: 2 LATDSDPIVAIATASGRGGIGVVRLSLGRAGEAAARALSDALCGA---RLMPRHASYVPF 58
Query: 56 FCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMP 115
+D+G+ +YF APHSYTGE VIEL GHGGPI+L +LL CL+ G++ GLRLA P
Sbjct: 59 LDGAGEPLDRGIALYFPAPHSYTGEHVIELQGHGGPIVLQLLLQRCLDAGRAHGLRLAEP 118
Query: 116 GEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRT 175
GEFT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L+D +I LR
Sbjct: 119 GEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVDDVIALRM 178
Query: 176 LIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235
L+E + DFPEE + L D +L I+++L ++ ++ AL+R GL+VVL GQPNV
Sbjct: 179 LVEATLDFPEEEIDF-LEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNV 237
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKSSL N+L G+++AIVT IAGTTRDK+ +TIQI I DTAG +++ +E
Sbjct: 238 GKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHIIDTAG-------LRETEDE 290
Query: 296 VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355
VEKIGI RTW E++ +D+++++ DAR D+ I FP +PV+ V NK D +G
Sbjct: 291 VEKIGIARTWGEIERADVVLHLLDARSGLGPG-DEAIAARFPDGVPVVRVLNKTDLTGAP 349
Query: 356 KNIN------YKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSL 409
++ + ++ + LSA + GI+LLR LL I Q S YLARERH+ +L
Sbjct: 350 ASVTRTGGGAARADVCEVRLSAKRGDGIDLLRGELLR-IAGWQAGAESVYLARERHLIAL 408
Query: 410 NEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFC 469
A +L+ A + +E+N + L+L AE+LR E+L+SI G+ T++DLL IFS+FC
Sbjct: 409 RAAQAHLARAAE---HAEQNAQA-LDLFAEELRLAQERLNSITGEFTSDDLLGVIFSRFC 464
Query: 470 IGK 472
IGK
Sbjct: 465 IGK 467
>gi|33598900|ref|NP_886543.1| tRNA modification GTPase TrmE [Bordetella parapertussis 12822]
gi|46577407|sp|Q7W2J0.1|MNME_BORPA RecName: Full=tRNA modification GTPase MnmE
gi|33575030|emb|CAE39696.1| putative tRNA modification GTPase [Bordetella parapertussis]
Length = 450
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 209/457 (45%), Positives = 295/457 (64%), Gaps = 21/457 (4%)
Query: 16 GRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPH 75
GRGG+G++R+SG +L E+ + + L PR A Y F + +ID+GL IYF+APH
Sbjct: 15 GRGGIGVVRISGPDL---AELAQRLFGRPLTPRHAHYLPFRAADGEVIDEGLAIYFRAPH 71
Query: 76 SYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVEA 135
SYTGEDV+EL GHGGP +L +L+ CL+ G +GLR A PGEFT+RAFLN +LDL Q EA
Sbjct: 72 SYTGEDVLELQGHGGPAVLRRILARCLQAGHDLGLRPAEPGEFTRRAFLNERLDLAQAEA 131
Query: 136 IIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELILNKN 195
+ DLI+AS+E+AA+ AM SLSG+FS+ +N L D++I+LR L+E + DFPEE + L K
Sbjct: 132 VADLIDASSEAAARGAMASLSGEFSQRVNDLSDRIIHLRMLVEATLDFPEEEIDF-LEKY 190
Query: 196 DFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSI 255
L + L +I Q ++ ++R GL+VVL G+PNVGKSSL N+L G D+AIVT I
Sbjct: 191 QARPTLQALTHDLDTLIAQARQGVILREGLHVVLAGKPNVGKSSLLNALAGDDIAIVTPI 250
Query: 256 AGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIII 315
AGTTRDK+ + I I+ I DTAG+ D + + VE IGIERTW E++ +D+I+
Sbjct: 251 AGTTRDKVVQEIHIDGVPLHIVDTAGLRDTD-------DAVESIGIERTWKEIERADLIL 303
Query: 316 YVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKRI 375
++QD D +I++ P PV+ V+NK+D + ++ ++ +SA I
Sbjct: 304 HLQDVTQPP-DHLDAQIVRRLPARTPVLNVFNKVDL----LDAAFQGQPDSLAISARGGI 358
Query: 376 GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLE 435
G++ LR LL L E SP+LARERH+H+L +A +L +I + + ++ L+
Sbjct: 359 GLDALRQRLLQLAGWNPGAE-SPWLARERHLHALQQAAQHL----EIATEHAREDDRVLD 413
Query: 436 LIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L AE+LR HE L+ I GK T++DLL IFS FCIGK
Sbjct: 414 LFAEELRLAHEALTGITGKFTSDDLLGEIFSSFCIGK 450
>gi|33594714|ref|NP_882358.1| tRNA modification GTPase TrmE [Bordetella pertussis Tohama I]
gi|384206011|ref|YP_005591750.1| tRNA modification GTPase TrmE [Bordetella pertussis CS]
gi|408417451|ref|YP_006628158.1| tRNA modification GTPase [Bordetella pertussis 18323]
gi|46577402|sp|Q7VSR5.1|MNME_BORPE RecName: Full=tRNA modification GTPase MnmE
gi|33564790|emb|CAE44118.1| putative tRNA modification GTPase [Bordetella pertussis Tohama I]
gi|332384125|gb|AEE68972.1| tRNA modification GTPase TrmE [Bordetella pertussis CS]
gi|401779621|emb|CCJ65163.1| putative tRNA modification GTPase [Bordetella pertussis 18323]
Length = 450
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 209/457 (45%), Positives = 295/457 (64%), Gaps = 21/457 (4%)
Query: 16 GRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPH 75
GRGG+G++R+SG +L E+ + + L PR A Y F + +ID+GL IYF+APH
Sbjct: 15 GRGGIGVVRISGPDL---AELAQRLFGRPLTPRHAHYLPFRAADGEVIDEGLAIYFRAPH 71
Query: 76 SYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVEA 135
SYTGEDV+EL GHGGP +L +L+ CL+ G +GLR A PGEFT+RAFLN +LDL Q EA
Sbjct: 72 SYTGEDVLELQGHGGPAVLRRILARCLQAGHDLGLRPAEPGEFTRRAFLNERLDLAQAEA 131
Query: 136 IIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELILNKN 195
+ DLI+AS+E+AA+ AM SLSG+FS+ +N L D++I+LR L+E + DFPEE + L K
Sbjct: 132 VADLIDASSEAAARGAMASLSGEFSQRVNDLSDRIIHLRMLVEATLDFPEEEIDF-LEKY 190
Query: 196 DFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSI 255
L + L +I Q ++ ++R GL+VVL G+PNVGKSSL N+L G D+AIVT I
Sbjct: 191 QARPTLQALTHDLDTLIAQARQGVILREGLHVVLAGKPNVGKSSLLNALAGDDIAIVTPI 250
Query: 256 AGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIII 315
AGTTRDK+ + I I+ I DTAG+ D + + VE IGIERTW E++ +D+I+
Sbjct: 251 AGTTRDKVVQEIHIDGVPLHIVDTAGLRDTD-------DAVESIGIERTWKEIERADLIL 303
Query: 316 YVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKRI 375
++QD D +I++ P PV+ V+NK+D + ++ ++ +SA I
Sbjct: 304 HLQDVTQPP-DHLDAQIVRRLPARTPVLNVFNKVDL----LDAAFQGQPDSLAISARGGI 358
Query: 376 GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLE 435
G++ LR LL L E SP+LARERH+H+L +A +L +I + + ++ L+
Sbjct: 359 GLDALRQHLLQLAGWNPGAE-SPWLARERHLHALQQAAQHL----EIATEHAREDDRVLD 413
Query: 436 LIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L AE+LR HE L+ I GK T++DLL IFS FCIGK
Sbjct: 414 LFAEELRLAHEALTGITGKFTSDDLLGEIFSSFCIGK 450
>gi|33603979|ref|NP_891539.1| tRNA modification GTPase TrmE [Bordetella bronchiseptica RB50]
gi|46577412|sp|Q7WDI4.1|MNME_BORBR RecName: Full=tRNA modification GTPase MnmE
gi|33568955|emb|CAE35369.1| putative tRNA modification GTPase [Bordetella bronchiseptica RB50]
Length = 450
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 209/457 (45%), Positives = 295/457 (64%), Gaps = 21/457 (4%)
Query: 16 GRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPH 75
GRGG+G++R+SG +L E+ + + L PR A Y F + +ID+GL IYF+APH
Sbjct: 15 GRGGIGVVRISGPDL---AELAQRLFGRPLTPRHAHYLPFRAADGEVIDEGLAIYFRAPH 71
Query: 76 SYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVEA 135
SYTGEDV+EL GHGGP +L +L+ CL+ G +GLR A PGEFT+RAFLN +LDL Q EA
Sbjct: 72 SYTGEDVLELQGHGGPAVLRRILARCLQAGHDLGLRPAEPGEFTRRAFLNERLDLAQAEA 131
Query: 136 IIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELILNKN 195
+ DLI+AS+E+AA+ AM SLSG+FS+ +N L D++I+LR L+E + DFPEE + L K
Sbjct: 132 VADLIDASSEAAARGAMTSLSGEFSQRVNDLSDRIIHLRMLVEATLDFPEEEIDF-LEKY 190
Query: 196 DFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSI 255
L + L +I Q ++ ++R GL+VVL G+PNVGKSSL N+L G D+AIVT I
Sbjct: 191 QARPTLQALTHDLDTLIAQARQGVILREGLHVVLAGKPNVGKSSLLNALAGDDIAIVTPI 250
Query: 256 AGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIII 315
AGTTRDK+ + I I+ I DTAG+ D + + VE IGIERTW E++ +D+I+
Sbjct: 251 AGTTRDKVVQEIHIDGVPLHIVDTAGLRDTD-------DAVESIGIERTWKEIERADLIL 303
Query: 316 YVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKRI 375
++QD D +I++ P PV+ V+NK+D + ++ ++ +SA I
Sbjct: 304 HLQDVTQPP-DHLDAQIVRRLPARTPVLNVFNKVDL----LDAAFQGQPDSLAISARGGI 358
Query: 376 GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLE 435
G++ LR LL L E SP+LARERH+H+L +A +L +I + + ++ L+
Sbjct: 359 GLDALRQRLLQLAGWNPGAE-SPWLARERHLHALQQAAQHL----EIATEHAREDDRVLD 413
Query: 436 LIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L AE+LR HE L+ I GK T++DLL IFS FCIGK
Sbjct: 414 LFAEELRLAHEALTGITGKFTSDDLLGEIFSSFCIGK 450
>gi|412340706|ref|YP_006969461.1| tRNA modification GTPase [Bordetella bronchiseptica 253]
gi|427816988|ref|ZP_18984052.1| putative tRNA modification GTPase [Bordetella bronchiseptica 1289]
gi|408770540|emb|CCJ55334.1| putative tRNA modification GTPase [Bordetella bronchiseptica 253]
gi|410567988|emb|CCN25561.1| putative tRNA modification GTPase [Bordetella bronchiseptica 1289]
Length = 450
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 209/457 (45%), Positives = 295/457 (64%), Gaps = 21/457 (4%)
Query: 16 GRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPH 75
GRGG+G++R+SG +L E+ + + L PR A Y F + +ID+GL IYF+APH
Sbjct: 15 GRGGIGVVRISGPDL---AELAQRLFGRPLTPRHAHYLPFRAADGEVIDEGLAIYFRAPH 71
Query: 76 SYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVEA 135
SYTGEDV+EL GHGGP +L +L+ CL+ G +GLR A PGEFT+RAFLN +LDL Q EA
Sbjct: 72 SYTGEDVLELQGHGGPAVLRRILARCLQAGHDLGLRPAEPGEFTRRAFLNERLDLAQAEA 131
Query: 136 IIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELILNKN 195
+ DLI+AS+E+AA+ AM SLSG+FS+ +N L D++I+LR L+E + DFPEE + L K
Sbjct: 132 VADLIDASSEAAARGAMASLSGEFSQRVNDLSDRIIHLRMLVEATLDFPEEEIDF-LEKY 190
Query: 196 DFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSI 255
L + L +I Q ++ ++R GL+VVL G+PNVGKSSL N+L G D+AIVT I
Sbjct: 191 QARPTLQALTHDLDTLIAQARQGVILREGLHVVLAGKPNVGKSSLLNALAGDDIAIVTPI 250
Query: 256 AGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIII 315
AGTTRDK+ + I I+ I DTAG+ D + + VE IGIERTW E++ +D+I+
Sbjct: 251 AGTTRDKVVQEIHIDGVPLHIVDTAGLRDTD-------DAVESIGIERTWKEIERADLIL 303
Query: 316 YVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKRI 375
++QD D +I++ P PV+ V+NK+D + ++ ++ +SA I
Sbjct: 304 HLQDVTQPP-DHLDAQIVRRLPARTPVLNVFNKVDL----LDAAFQGRPDSLAISARGGI 358
Query: 376 GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLE 435
G++ LR LL L E SP+LARERH+H+L +A +L +I + + ++ L+
Sbjct: 359 GLDALRQRLLQLAGWNPGAE-SPWLARERHLHALQQAAQHL----EIATEHAREDDRVLD 413
Query: 436 LIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L AE+LR HE L+ I GK T++DLL IFS FCIGK
Sbjct: 414 LFAEELRLAHEALTGITGKFTSDDLLGEIFSSFCIGK 450
>gi|187479888|ref|YP_787913.1| tRNA modification GTPase TrmE [Bordetella avium 197N]
gi|123513530|sp|Q2KTI2.1|MNME_BORA1 RecName: Full=tRNA modification GTPase MnmE
gi|115424475|emb|CAJ51029.1| probable tRNA modification GTPase [Bordetella avium 197N]
Length = 450
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 216/466 (46%), Positives = 299/466 (64%), Gaps = 21/466 (4%)
Query: 7 PIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKG 66
PI IAT PGRGG+G++R+SG L + + + + L PR A Y F ++ ID+G
Sbjct: 6 PIAAIATAPGRGGIGVVRVSGPRLDAYIRALLGR---DLTPRHAHYLPFLAEDGERIDEG 62
Query: 67 LVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNN 126
+ IYF+ PHSYTGEDV+EL GHGGP +L LL+ CLE G+S+G+RLA PGEFT+RAFLN+
Sbjct: 63 IAIYFQGPHSYTGEDVLELQGHGGPAVLKRLLARCLEAGRSLGMRLAEPGEFTRRAFLND 122
Query: 127 KLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEE 186
++DL Q EA+ DLI AS+E+AA+ AM SLSG+FS+ IN L ++++LR L+E + DFPEE
Sbjct: 123 RMDLAQAEAVADLIEASSEAAARGAMASLSGEFSQRINDLSGRIVHLRMLVEATLDFPEE 182
Query: 187 NQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVG 246
+ L K L +++ L +I Q ++ ++R GL+VVL GQPNVGKSSL N+L G
Sbjct: 183 EIDF-LEKYQARPTLDGLRQDLDTLIAQARQGIILREGLHVVLAGQPNVGKSSLLNALAG 241
Query: 247 SDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWV 306
D+AIVT IAGTTRDK+ + I I+ I DTAG +++ + VE IGI RTW
Sbjct: 242 DDIAIVTPIAGTTRDKVVQEIFIDGVPLHIVDTAG-------LRETEDTVESIGIARTWK 294
Query: 307 ELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIAN 366
E++ +D+I+++QDA D I P PV+ V+NKID + +N+I
Sbjct: 295 EIERADLILHLQDATAPGDI-LDVDITARLPARTPVLAVFNKIDLLTSTAQL-AENSIG- 351
Query: 367 IYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQS 426
+SA + +G+ LR LL + E SP+LARERH+H+L A +L A + +
Sbjct: 352 --ISAKQGLGLEELRARLLQMAGWNPGAE-SPWLARERHLHALQAARDHLDIAAEHASHD 408
Query: 427 EKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ L+L AE+LR HE LSSI GK T++DLL IFS FCIGK
Sbjct: 409 ----DRVLDLFAEELRLSHESLSSITGKFTSDDLLGEIFSSFCIGK 450
>gi|299530922|ref|ZP_07044336.1| tRNA modification GTPase TrmE [Comamonas testosteroni S44]
gi|298721143|gb|EFI62086.1| tRNA modification GTPase TrmE [Comamonas testosteroni S44]
Length = 475
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 220/492 (44%), Positives = 307/492 (62%), Gaps = 37/492 (7%)
Query: 1 MLTK-NSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKN 59
ML + N PI IAT PGRG VGI+R+SGK + ++V +C K +LKPR ATY F
Sbjct: 1 MLPRHNDPIAAIATAPGRGAVGIVRVSGKGIAALVRALCGK---ELKPREATYLPFRDAG 57
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSI---------GL 110
+ ID GL IYF PHSYTGEDV+EL HGGP++L +LL+ CLE +S GL
Sbjct: 58 GSPIDHGLAIYFPGPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAQSTNEDGKPVLTGL 117
Query: 111 RLAMPGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKL 170
RLA PGEFT+RAFLN+K+DL Q EAI DLI+ASTE+A +SA SLSG FS+ I++L D L
Sbjct: 118 RLAQPGEFTERAFLNDKIDLAQAEAIADLIDASTEAAVRSASRSLSGAFSQEIHVLRDAL 177
Query: 171 INLRTLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLI 230
++LR L+E + DFPEE + L K D F +L +++ ++ ++ + + AL+R G+ VV+
Sbjct: 178 VHLRMLVEATLDFPEEEIDF-LQKADAFGQLERLRHQVTAVLARAHQGALLREGIKVVIA 236
Query: 231 GQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIK 290
GQPN GKSSL N+L G+++AIVT IAGTTRDK+ +TIQI + DTAG+ D +
Sbjct: 237 GQPNAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRDSD---- 292
Query: 291 KNINEVEKIGIERTWVELKNSDIIIYVQD-ARYDK------HTDFDKKIIKNFPMNIPVI 343
+EVE+IGI R W E+ +D ++++ D R ++ D + + P +PVI
Sbjct: 293 ---DEVERIGIARAWDEIAAADAVLFLHDLTRVEQADYAAADADIARTLQDKLPAQVPVI 349
Query: 344 YVWNKIDYSGH--QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLA 401
+VWNK D + Q + N I LSA G++ LR LL+ + Q+ YLA
Sbjct: 350 HVWNKTDMAAADVQSRHTAQLNAEQIALSARTGDGLDALRKRLLE-VAGWQSAPEGLYLA 408
Query: 402 RERHIHSLNEANYYLSCAI-KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDL 460
R RH+ +L + +L A ++ QS +L+L+AE+LR L+SI G+ +++DL
Sbjct: 409 RARHVEALQAVDAHLEMADEQLAAQS-----AHLDLLAEELRLAQLSLNSITGEFSSDDL 463
Query: 461 LDNIFSQFCIGK 472
L IFS FCIGK
Sbjct: 464 LGVIFSSFCIGK 475
>gi|410474976|ref|YP_006898257.1| tRNA modification GTPase [Bordetella parapertussis Bpp5]
gi|408445086|emb|CCJ51883.1| putative tRNA modification GTPase [Bordetella parapertussis Bpp5]
Length = 450
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 208/457 (45%), Positives = 294/457 (64%), Gaps = 21/457 (4%)
Query: 16 GRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPH 75
GRGG+G++R+SG +L E+ + + L PR A Y F + +ID+GL IYF+APH
Sbjct: 15 GRGGIGVVRISGPDL---AELAQRLFGRPLTPRHAHYLPFRAADGEVIDEGLAIYFRAPH 71
Query: 76 SYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVEA 135
SYTGEDV+EL GHGGP +L +L+ CL+ G +GLR A PGEFT+RAFLN +LDL Q EA
Sbjct: 72 SYTGEDVLELQGHGGPAVLRRILARCLQAGHDLGLRPAEPGEFTRRAFLNERLDLAQAEA 131
Query: 136 IIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELILNKN 195
+ DLI+AS+E+AA+ AM SLSG+FS+ +N L D++I+LR L+E + DFPEE + L K
Sbjct: 132 VADLIDASSEAAARGAMASLSGEFSQRVNDLSDRIIHLRMLVEATLDFPEEEIDF-LEKY 190
Query: 196 DFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSI 255
L + L +I Q ++ ++R GL+VVL G+PNVGKSSL N+L G D+ IVT I
Sbjct: 191 QARPTLQALTHDLDTLIAQARQGVILREGLHVVLAGKPNVGKSSLLNALAGDDIVIVTPI 250
Query: 256 AGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIII 315
AGTTRDK+ + I I+ I DTAG+ D + + VE IGIERTW E++ +D+I+
Sbjct: 251 AGTTRDKVVQEIHIDGVPLHIVDTAGLRDTD-------DAVESIGIERTWKEIERADLIL 303
Query: 316 YVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKRI 375
++QD D +I++ P PV+ V+NK+D + ++ ++ +SA I
Sbjct: 304 HLQDVTQPP-DHLDAQIVRRLPARTPVLNVFNKVDL----LDAAFQGQPDSLAISARGGI 358
Query: 376 GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLE 435
G++ LR LL L E SP+LARERH+H+L +A +L +I + + ++ L+
Sbjct: 359 GLDALRQRLLQLAGWNPGAE-SPWLARERHLHALQQAAQHL----EIATEHAREDDRVLD 413
Query: 436 LIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L AE+LR HE L+ I GK T++DLL IFS FCIGK
Sbjct: 414 LFAEELRLAHEALTGITGKFTSDDLLGEIFSSFCIGK 450
>gi|348617846|ref|ZP_08884380.1| tRNA modification GTPase TrmE [Candidatus Glomeribacter
gigasporarum BEG34]
gi|347816790|emb|CCD29030.1| tRNA modification GTPase TrmE [Candidatus Glomeribacter
gigasporarum BEG34]
Length = 461
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 210/471 (44%), Positives = 303/471 (64%), Gaps = 18/471 (3%)
Query: 5 NSPIIGIATPPGRGGVGIIRLS--GKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNI 62
+ PI IAT PGRGG+G++R+S GK+ ++ ++ ++L PR A+Y F N
Sbjct: 6 HEPIAAIATAPGRGGIGVVRISFGGKDAHAVNALMTALFGQRLIPRHASYVPFLDANGEA 65
Query: 63 IDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRA 122
+D+G+ +YF AP SYTGE +ELHGHGGPI+L ++L CLE G++ G+RLA PGEFT+RA
Sbjct: 66 LDRGIGLYFPAPRSYTGEHTLELHGHGGPIVLQLVLQRCLEAGQAFGMRLAEPGEFTRRA 125
Query: 123 FLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFD 182
FLN+KLDL Q EA+ DLI A T +AA+SA SL G+FS+ + L+++L +LR L+E + D
Sbjct: 126 FLNDKLDLAQAEAVADLIEAHTSAAARSAQRSLEGEFSRAVCALIERLTSLRALVEATLD 185
Query: 183 FPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFN 242
FPEE + +L++ D +L +++ L +I + ++ AL+R GL +V+ G+PNVGKSSL N
Sbjct: 186 FPEEEID-VLSRADAHGQLTHLRRALEEIRRNARQGALLREGLTIVIAGRPNVGKSSLLN 244
Query: 243 SLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302
+L G++ AIVT IAGTTRD+IT++IQI I DTAG ++ +EVE++GIE
Sbjct: 245 ALAGAERAIVTPIAGTTRDQITQSIQIEGIPLHIIDTAG-------LRTAKDEVERMGIE 297
Query: 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKN 362
R W E+K + I++V DA D D D+ I P + PVI V+NK D + + N
Sbjct: 298 RAWQEIKRAGAILHVLDASTDATPD-DQAIAARLPASAPVIRVFNKTDLTPIAPCVEQVN 356
Query: 363 -NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIK 421
N+ + LSA GI+LLR LL+ I +T S Y AR+RH+ +L A +L A
Sbjct: 357 ENMRTVRLSAKFADGIDLLRAQLLE-IAGGRTASESVYSARQRHLDALAVAGQHLDAAGH 415
Query: 422 IINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ L+L AE+LR ++LSS+ G+ T +DLL IFS+FCIGK
Sbjct: 416 AARDAQA-----LDLFAEELRLAQQQLSSMSGEFTPDDLLGEIFSRFCIGK 461
>gi|293602680|ref|ZP_06685121.1| tRNA modification GTPase TrmE [Achromobacter piechaudii ATCC 43553]
gi|292818871|gb|EFF77911.1| tRNA modification GTPase TrmE [Achromobacter piechaudii ATCC 43553]
Length = 450
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 208/457 (45%), Positives = 296/457 (64%), Gaps = 21/457 (4%)
Query: 16 GRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPH 75
GRGG+G++R+SG +L E+V + ++ L PR A Y F + ++D+G+ IYF+APH
Sbjct: 15 GRGGIGVVRVSGADL---SELVRRLFQRDLTPRHAHYLPFKTSDGELLDEGIAIYFRAPH 71
Query: 76 SYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVEA 135
SYTGEDV+EL GHGGP +L +L SC+ G+ +G+RLA PGEFT+RAFLN+++DL Q EA
Sbjct: 72 SYTGEDVLELQGHGGPAVLRRVLESCVAAGRDLGVRLAEPGEFTRRAFLNDRMDLAQAEA 131
Query: 136 IIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELILNKN 195
+ DLI+AS+ +AA+ AM SLSG+FS +N L D++I+LR L+E + DFPEE + L K
Sbjct: 132 VADLIDASSVAAARGAMASLSGEFSARVNELSDRIIHLRMLVEATLDFPEEEIDF-LEKY 190
Query: 196 DFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSI 255
L + L K+I Q ++ ++R GL+VVL GQPNVGKSSL N+L G D+AIVT I
Sbjct: 191 QARPTLDALTADLSKLIAQARQGVILREGLHVVLAGQPNVGKSSLLNALAGDDIAIVTPI 250
Query: 256 AGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIII 315
AGTTRDK+ + I I+ I DTAG +++ + VE IGI RTW E++ +D+I+
Sbjct: 251 AGTTRDKVVQEIHIDGVPLHIVDTAG-------LRETEDTVESIGIARTWQEIERADVIL 303
Query: 316 YVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKRI 375
++QDA + D +I P PV+ V+NK+D + + + +SA +
Sbjct: 304 HLQDA-TQPGDELDAQITARLPPRTPVLKVFNKVDL----LSTAFAPGEGELGISAKRGA 358
Query: 376 GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLE 435
G++ LR LL + E SP+LARERH+H+L +A +L+ A + Q ++ L+
Sbjct: 359 GLDALRAALLHIAGWNPGAE-SPWLARERHLHALQQAAEHLALAGEHAGQD----DRVLD 413
Query: 436 LIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L AE+LR HE LSSI GK T++DLL IFS FCIGK
Sbjct: 414 LFAEELRLAHESLSSITGKFTSDDLLGEIFSSFCIGK 450
>gi|398802250|ref|ZP_10561466.1| tRNA modification GTPase TrmE [Polaromonas sp. CF318]
gi|398100719|gb|EJL90952.1| tRNA modification GTPase TrmE [Polaromonas sp. CF318]
Length = 470
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 216/491 (43%), Positives = 306/491 (62%), Gaps = 40/491 (8%)
Query: 1 MLTKN-SPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKN 59
ML ++ PI+ IAT PGRG VGI+R+SGK + ++E +C + L+PR ATY F
Sbjct: 1 MLARHHDPIVAIATAPGRGAVGIVRVSGKQIAPVIEALCGRP---LQPRQATYLPFRDAQ 57
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIG---------- 109
ID+GL ++F APHSYTGEDV+EL HGGP++L +LL+ CLE G ++
Sbjct: 58 GAAIDQGLALHFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAGAALDPITGQAALPR 117
Query: 110 LRLAMPGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDK 169
LR+A PGEFT+RAFLN+K+DL Q EAI DLI+ASTE+AA+SA S+SG+FS +N LL++
Sbjct: 118 LRVAQPGEFTERAFLNDKIDLAQAEAIADLIDASTETAARSAARSMSGEFSLAVNTLLEQ 177
Query: 170 LINLRTLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVL 229
LI+LR L+E + DFPEE+ + L K D +L +++ L ++Q+ + AL+R G+ VV+
Sbjct: 178 LIHLRMLVEATLDFPEEDIDF-LQKADAQGQLARLQTTLAAVMQRAVQGALLREGIKVVI 236
Query: 230 IGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKI 289
GQPN GKSSL N+L G+++AIVT IAGTTRDK+++ IQI + DTAG+ D
Sbjct: 237 AGQPNAGKSSLLNALAGAELAIVTPIAGTTRDKVSQLIQIEGVPLHVVDTAGLRD----- 291
Query: 290 KKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHT-DF---DKKII----KNFPMNIP 341
++EVEKIG+ER W E+ ++D ++++ D +HT D+ D I + P N P
Sbjct: 292 --ALDEVEKIGVERAWAEIASADAVLFLHD--LTRHTADYLAADAHIAQVLGRELPRNTP 347
Query: 342 VIYVWNKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLA 401
VI VWNK D + Q + K + +SA G+ LR+ LL + Q + ++A
Sbjct: 348 VIDVWNKCDAASAQVLGSIKG---GVLISAKTGAGLQDLRSQLLQ-VAGWQAVPEGVFMA 403
Query: 402 RERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLL 461
RERH+ +L + L A + + L+L+AEDLR L I G T +DLL
Sbjct: 404 RERHVRALRQVEEQLVKA----GMQLQAAQPALDLLAEDLRQAQLHLGEITGVFTPDDLL 459
Query: 462 DNIFSQFCIGK 472
IFS+FCIGK
Sbjct: 460 GEIFSRFCIGK 470
>gi|121598239|ref|YP_994136.1| tRNA modification GTPase TrmE [Burkholderia mallei SAVP1]
gi|124384367|ref|YP_001028207.1| tRNA modification GTPase TrmE [Burkholderia mallei NCTC 10229]
gi|126449818|ref|YP_001083053.1| tRNA modification GTPase TrmE [Burkholderia mallei NCTC 10247]
gi|238563702|ref|ZP_00438440.2| tRNA modification GTPase TrmE [Burkholderia mallei GB8 horse 4]
gi|251767367|ref|ZP_04820085.1| tRNA modification GTPase TrmE [Burkholderia mallei PRL-20]
gi|254175200|ref|ZP_04881861.1| tRNA modification GTPase TrmE [Burkholderia mallei ATCC 10399]
gi|254201961|ref|ZP_04908325.1| tRNA modification GTPase TrmE [Burkholderia mallei FMH]
gi|254207294|ref|ZP_04913645.1| tRNA modification GTPase TrmE [Burkholderia mallei JHU]
gi|254359603|ref|ZP_04975874.1| tRNA modification GTPase TrmE [Burkholderia mallei 2002721280]
gi|121227049|gb|ABM49567.1| tRNA modification GTPase TrmE [Burkholderia mallei SAVP1]
gi|124292387|gb|ABN01656.1| tRNA modification GTPase TrmE [Burkholderia mallei NCTC 10229]
gi|126242688|gb|ABO05781.1| tRNA modification GTPase TrmE [Burkholderia mallei NCTC 10247]
gi|147747855|gb|EDK54931.1| tRNA modification GTPase TrmE [Burkholderia mallei FMH]
gi|147752836|gb|EDK59902.1| tRNA modification GTPase TrmE [Burkholderia mallei JHU]
gi|148028817|gb|EDK86749.1| tRNA modification GTPase TrmE [Burkholderia mallei 2002721280]
gi|160696245|gb|EDP86215.1| tRNA modification GTPase TrmE [Burkholderia mallei ATCC 10399]
gi|238520163|gb|EEP83625.1| tRNA modification GTPase TrmE [Burkholderia mallei GB8 horse 4]
gi|243063001|gb|EES45187.1| tRNA modification GTPase TrmE [Burkholderia mallei PRL-20]
Length = 488
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 222/483 (45%), Positives = 311/483 (64%), Gaps = 28/483 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-----GKNLWSIVEIVCKKTKKQLKPRFATYSSF 55
+ T + PI+ IAT GRGG+G++RLS ++ + +C +L PR A+Y F
Sbjct: 23 LATDSDPIVAIATASGRGGIGVVRLSLGRAGEAAARALSDALCGA---RLMPRHASYVPF 79
Query: 56 FCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMP 115
+D+G+ +YF APHSYTGE VIEL GHGGPI+L +LL CL+ G++ GLRLA P
Sbjct: 80 LDGAGEPLDRGIALYFPAPHSYTGEHVIELQGHGGPIVLQLLLQRCLDAGRAHGLRLAEP 139
Query: 116 GEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRT 175
GEFT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L+D +I LR
Sbjct: 140 GEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVDDVIALRM 199
Query: 176 LIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235
L+E + DFPEE + L D +L I+++L ++ ++ AL+R GL+VVL GQPNV
Sbjct: 200 LVEATLDFPEEEIDF-LEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNV 258
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKSSL N+L G+++AIVT IAGTTRDK+ +TIQI I DTAG +++ +E
Sbjct: 259 GKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHIIDTAG-------LRETEDE 311
Query: 296 VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355
VEKIGI RTW E++ +D+++++ DAR D+ I FP +PV+ V NK D +G
Sbjct: 312 VEKIGIARTWGEIERADVVLHLLDARSGLGPG-DEAIAARFPDGVPVVRVLNKTDLTGAP 370
Query: 356 KNIN------YKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSL 409
++ + ++ + LSA + GI+LLR LL I Q S YLARERH+ +L
Sbjct: 371 ASVTRTGGGAARADVCEVRLSAKRGDGIDLLRGELLR-IAGWQAGAESVYLARERHLIAL 429
Query: 410 NEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFC 469
A +L+ A + +E+N + L+L AE+LR E+L+SI G+ T++DLL IFS+FC
Sbjct: 430 RAAQAHLARAAE---HAEQN-AQALDLFAEELRLAQERLNSITGEFTSDDLLGVIFSRFC 485
Query: 470 IGK 472
IGK
Sbjct: 486 IGK 488
>gi|121606994|ref|YP_984323.1| tRNA modification GTPase TrmE [Polaromonas naphthalenivorans CJ2]
gi|205415792|sp|A1VUS4.1|MNME_POLNA RecName: Full=tRNA modification GTPase MnmE
gi|120595963|gb|ABM39402.1| tRNA modification GTPase trmE [Polaromonas naphthalenivorans CJ2]
Length = 478
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 215/499 (43%), Positives = 312/499 (62%), Gaps = 48/499 (9%)
Query: 1 MLTKNS-PIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKN 59
ML ++ PI+ IAT PGRGGVGI+RLSG+ + +V+ +C + +L PR ATY F +
Sbjct: 1 MLARHHHPIVAIATAPGRGGVGIVRLSGQRIAPVVQALCGR---KLSPRQATYLPFRDAH 57
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIG---------- 109
IIDKGL I+F APHSYTGEDV+EL HGGP++L +LL+ CLE G ++
Sbjct: 58 GQIIDKGLAIFFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAGAALDPATGQPVLAQ 117
Query: 110 LRLAMPGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDK 169
LR+A PGEFT+RAFLN+K+DL Q EAI DLI+ASTE+AA+SA S+SG+FS+ +N LL++
Sbjct: 118 LRVAEPGEFTERAFLNDKIDLAQAEAIADLIDASTETAARSAARSMSGEFSQAVNTLLEQ 177
Query: 170 LINLRTLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVL 229
LI+LR L+E + DFPEE+ + L + D +L++++ L ++ + + A++R G+ VV+
Sbjct: 178 LIHLRMLVEATLDFPEEDIDF-LQQADAQGQLLRLQATLASVLARATQGAILREGIKVVI 236
Query: 230 IGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKI 289
GQPNVGKSSL N+L G+++AIVT +AGTTRDK+++ IQI + DTAG +
Sbjct: 237 AGQPNVGKSSLLNALAGAELAIVTPVAGTTRDKVSQLIQIEGVPLHVVDTAG-------L 289
Query: 290 KKNINEVEKIGIERTWVELKNSDIIIYVQD-ARYDKHTD-------------FDKKIIKN 335
++ ++EVEKIGI+R W E++++D ++++ D AR+D + +
Sbjct: 290 REALDEVEKIGIQRAWTEIESADAVLFLHDLARHDATENPLYAINYIADDARLQSALALK 349
Query: 336 FPMNIPVIYVWNKIDYSGHQ--KNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQT 393
P N +I VWNK D +G + + +N + +SA G+ LR LL ++ Q
Sbjct: 350 LPKNTAIIDVWNKSDMAGPELLRQVN-----GGVLISAKTGAGLQALREQLLRVV-GWQA 403
Query: 394 IESSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIG 453
++ARERH+ +L L A NQ + L+L+AEDLR LSSI G
Sbjct: 404 APEGVFMARERHVSALRSVQIQLLTA---QNQLQAAV-PALDLLAEDLRQAQLHLSSITG 459
Query: 454 KSTTNDLLDNIFSQFCIGK 472
+DLL IFS+FCIGK
Sbjct: 460 AFNADDLLGEIFSKFCIGK 478
>gi|91790726|ref|YP_551678.1| tRNA modification GTPase TrmE [Polaromonas sp. JS666]
gi|123164107|sp|Q121L2.1|MNME_POLSJ RecName: Full=tRNA modification GTPase MnmE
gi|91699951|gb|ABE46780.1| tRNA modification GTPase trmE [Polaromonas sp. JS666]
Length = 478
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 210/497 (42%), Positives = 309/497 (62%), Gaps = 44/497 (8%)
Query: 1 MLTKN-SPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKN 59
ML ++ PI+ IAT PGRG VGI+R+SGK++ ++ +C + L PR ATY F
Sbjct: 1 MLARHHDPIVAIATAPGRGAVGIVRVSGKDIAPVIAAICGRA---LAPRQATYLPFRDAQ 57
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIG---------- 109
+ID+GL I+F APHSYTGEDV+EL HGGP++L +LL+ CLE G ++
Sbjct: 58 GQVIDQGLAIHFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAGAALNPAIGQPWLAQ 117
Query: 110 LRLAMPGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDK 169
LR+A PGEFT+RAFLN+K+DL Q EAI DLI+ASTE+AA+SA S+SG+FS +N LL++
Sbjct: 118 LRVAQPGEFTERAFLNDKIDLAQAEAIADLIDASTETAARSAARSMSGEFSLAVNTLLEQ 177
Query: 170 LINLRTLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVL 229
LI+LR L+E + DFPEE+ + L K D +L +++ L ++Q+ + A++R G+ VV+
Sbjct: 178 LIHLRMLVEATLDFPEEDIDF-LQKADAQGQLSRLQATLTGVMQRATQGAILREGIKVVI 236
Query: 230 IGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKI 289
GQPN GKSSL N+L G+++AIVT IAGTTRDK+++ IQI + DTAG +
Sbjct: 237 AGQPNAGKSSLLNALAGAELAIVTPIAGTTRDKVSELIQIEGVPLHVVDTAG-------L 289
Query: 290 KKNINEVEKIGIERTWVELKNSDIIIYVQD-ARYDK---------HTDFDKKIIKN---- 335
++ ++EVEKIG+ER W E++++D ++++ D +R D + D +I +
Sbjct: 290 REALDEVEKIGVERAWAEIESADAVLFLHDLSRRDAALPAQDTINYIAADDRIARTLANK 349
Query: 336 FPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIE 395
P N +I VWNK D + + + +SA G+ LR LL ++ Q
Sbjct: 350 LPENTAIIDVWNKSDLT---SPAGLQQVQGGVLISAKTGAGLQTLRQRLLQVV-GWQAAP 405
Query: 396 SSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKS 455
++ARERH+ +L+ L+ A + + + L+L+AEDLR +LS I G+
Sbjct: 406 EGVFMARERHVRALHHVQDQLATAGRQLQAA----RPALDLLAEDLRQAQRQLSEITGEF 461
Query: 456 TTNDLLDNIFSQFCIGK 472
T +DLL IFS+FCIGK
Sbjct: 462 TPDDLLGEIFSRFCIGK 478
>gi|194291282|ref|YP_002007189.1| tRNA modification gtpase trme [Cupriavidus taiwanensis LMG 19424]
gi|193225117|emb|CAQ71128.1| GTPase involved in tRNA modification and in thiophene and furan
oxidation [Cupriavidus taiwanensis LMG 19424]
Length = 475
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 225/490 (45%), Positives = 318/490 (64%), Gaps = 33/490 (6%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M PI IAT PGRGG+G++R+SG ++ ++ VC + LKPR ATY F N
Sbjct: 1 MTAPQLPIAAIATAPGRGGIGVVRVSGPDVGPVMRAVCGQA---LKPRHATYLPFLDGNG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+ID GL +YF AP+SYTGE+V+EL GHGGP+++ MLL+ CL+ G IGLRLA PGEFT+
Sbjct: 58 KVIDHGLALYFPAPNSYTGEEVLELQGHGGPVVMQMLLTRCLQAGDGIGLRLAEPGEFTR 117
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EA+ DLI ASTE+AA+SA S+ G+FS I L+DK+I+LR L+E +
Sbjct: 118 RAFLNDKLDLAQAEAVADLIEASTEAAARSAARSMEGEFSNAIRQLVDKVIHLRMLVEAT 177
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + L ++D +L I+ +L ++ Q ++ AL+R GL+VVL GQPNVGKSSL
Sbjct: 178 LDFPEEEIDF-LEQSDARGQLATIRDELGAVLAQARQGALLREGLSVVLAGQPNVGKSSL 236
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G+++AIVT IAGTTRD++ +TIQI+ I DTAG+ ++ +EVE+IG
Sbjct: 237 LNALAGAELAIVTPIAGTTRDRVRETIQIDGIPLHIIDTAGL------REEAADEVERIG 290
Query: 301 IERTWVELKNSDIIIYVQDAR-YDKH------TDFDKKIIKNFPMNIPVIYVWNKID--- 350
IERTW ++ +DI++++ DA Y +H D K+ P P++ + NKID
Sbjct: 291 IERTWDAIRRADIVLHLVDATDYLRHGLSEIDDAIDDKLSGQLPPGAPIVRIVNKIDKAP 350
Query: 351 ------YSGHQKNINYKN--NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLAR 402
+ G++ ++ N N I++SA GI LLR LL L+ Q+ +LAR
Sbjct: 351 AVGEMMFGGNRPHVVAANGPNPTEIWISARTGAGIELLRRELLRLV-GWQSGNEGTFLAR 409
Query: 403 ERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLD 462
ERH+ +L +A L A + QS++ + L+L AE+LR E L+SI G+ T++DLL
Sbjct: 410 ERHLTALRQAQSRLDVAAE---QSQRQAQA-LDLFAEELRLAQEHLNSITGEFTSDDLLG 465
Query: 463 NIFSQFCIGK 472
IF++FCIGK
Sbjct: 466 TIFTRFCIGK 475
>gi|205829067|sp|A1WDB4.2|MNME_ACISJ RecName: Full=tRNA modification GTPase MnmE
Length = 466
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 216/482 (44%), Positives = 305/482 (63%), Gaps = 26/482 (5%)
Query: 1 MLTKNS-PIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKN 59
ML ++S PI+ IAT PGRG VGI+R+SGK + ++V+ +C + LKPR ATY F
Sbjct: 1 MLPRHSDPIVAIATAPGRGAVGIVRVSGKQIGALVQALCGRA---LKPREATYLPFRDAA 57
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSI--GLRLAMPGE 117
ID+GL +YF APHSYTGEDV+EL HGGP++L +LL+ CLE + + LRLA PGE
Sbjct: 58 GQAIDQGLALYFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAQGLLPRLRLAEPGE 117
Query: 118 FTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLI 177
FT+RAFLN+K+DL Q EAI DLI+ASTE+AA+ A SLSG FS+ I+ L D L++LR L+
Sbjct: 118 FTERAFLNDKIDLAQAEAIADLIDASTEAAARGASRSLSGDFSREIHTLRDALVHLRMLV 177
Query: 178 EFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGK 237
E + DFPEE + L K D +L +K+ L +++Q+ + AL+R G+ VV+ GQPN GK
Sbjct: 178 EATLDFPEEEIDF-LRKADASGQLSNLKRSLARVMQRASQGALLREGIKVVIAGQPNAGK 236
Query: 238 SSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVE 297
SSL N+L G+++AIVT IAGTTRDK+ +TIQI + DTAG ++++ +EVE
Sbjct: 237 SSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAG-------LRESDDEVE 289
Query: 298 KIGIERTWVELKNSDIIIYVQD-ARYD--KHTDFDKKIIKN----FPMNIPVIYVWNKID 350
+IGI R W E+ +D ++++ D R+ ++ D D I P +PV+ VWNK D
Sbjct: 290 RIGIARAWDEIAGADAVLFLHDLTRWGSAQYQDDDAAIAHTLSNRLPAGVPVVDVWNKAD 349
Query: 351 YSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLN 410
+ + + LSA G++ LR LL I Q+ Y+AR RHI +L
Sbjct: 350 AAPQAAAPAREGESQAVLLSARTGQGLDTLRRQLLQ-IAGWQSAAEGVYIARARHIEALR 408
Query: 411 EANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCI 470
+ +L ++ Q E + L+L+AE+LR L++I G+ T++DLL IFS FCI
Sbjct: 409 AVDAHL---MEAAAQLESDG-PALDLLAEELRLAQNALNTITGEFTSDDLLGVIFSSFCI 464
Query: 471 GK 472
GK
Sbjct: 465 GK 466
>gi|326319555|ref|YP_004237227.1| tRNA modification GTPase TrmE [Acidovorax avenae subsp. avenae ATCC
19860]
gi|323376391|gb|ADX48660.1| tRNA modification GTPase TrmE [Acidovorax avenae subsp. avenae ATCC
19860]
Length = 476
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/492 (43%), Positives = 304/492 (61%), Gaps = 36/492 (7%)
Query: 1 MLTKNS-PIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKN 59
ML +++ PI IAT PGRG VGI+R+SG+ + +VE +C +T L+PR ATY F
Sbjct: 1 MLPRHTDPIAAIATAPGRGAVGIVRVSGRGVGPLVEALCGRT---LRPREATYLPFRDAA 57
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSI----------G 109
ID+GL +YF APHSYTGEDV+EL HGGP++L +LL+ CL+ G
Sbjct: 58 GQSIDQGLALYFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLQAASEPDRATGRPRLPG 117
Query: 110 LRLAMPGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDK 169
LRLA PGEFT+RAFLN+K+DL Q EAI DLI+ASTE+AA+SA SL+G FS I+ L D
Sbjct: 118 LRLARPGEFTERAFLNDKIDLAQAEAIADLIDASTEAAARSASRSLAGAFSDEIHRLRDA 177
Query: 170 LINLRTLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVL 229
L++LR L+E + DFPEE + L K D +L +++ L +++ + ++ AL+R G+ VV+
Sbjct: 178 LVHLRMLVEATLDFPEEEIDF-LRKADAHGQLAALQRTLAEVMGRTRQGALLREGIKVVI 236
Query: 230 IGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKI 289
GQPN GKSSL N+L G+++AIVT IAGTTRDK+ +TIQI + DTAG +
Sbjct: 237 AGQPNAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAG-------L 289
Query: 290 KKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFD-------KKIIKNFPMNIPV 342
+++ +EVE+IGIER W E+ +D ++++ D D++ ++ P +PV
Sbjct: 290 RESDDEVERIGIERAWQEIAAADAVLFLHDLTRAGQPDYEAADAEIAARLAGMAPAQVPV 349
Query: 343 IYVWNKIDYSGHQKNI--NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYL 400
+ VWNK D + + A + LSA G++ LR LLD I Q+ Y
Sbjct: 350 VDVWNKSDRAEGSSGAAPDAPGRAAAVRLSARTGEGLDGLRRVLLD-IAGWQSAPEGIYT 408
Query: 401 ARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDL 460
AR RH+ +L + +L ++ Q E + L+L+AE+LR + L++I G+ T++DL
Sbjct: 409 ARARHLEALQAVDAHL---MEAAAQLESDG-PALDLLAEELRLAQQALNAITGEFTSDDL 464
Query: 461 LDNIFSQFCIGK 472
L IFS FCIGK
Sbjct: 465 LGVIFSSFCIGK 476
>gi|121596419|ref|YP_988315.1| tRNA modification GTPase TrmE [Acidovorax sp. JS42]
gi|120608499|gb|ABM44239.1| tRNA modification GTPase trmE [Acidovorax sp. JS42]
Length = 486
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 216/482 (44%), Positives = 305/482 (63%), Gaps = 26/482 (5%)
Query: 1 MLTKNS-PIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKN 59
ML ++S PI+ IAT PGRG VGI+R+SGK + ++V+ +C + LKPR ATY F
Sbjct: 21 MLPRHSDPIVAIATAPGRGAVGIVRVSGKQIGALVQALCGRA---LKPREATYLPFRDAA 77
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSI--GLRLAMPGE 117
ID+GL +YF APHSYTGEDV+EL HGGP++L +LL+ CLE + + LRLA PGE
Sbjct: 78 GQAIDQGLALYFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAQGLLPRLRLAEPGE 137
Query: 118 FTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLI 177
FT+RAFLN+K+DL Q EAI DLI+ASTE+AA+ A SLSG FS+ I+ L D L++LR L+
Sbjct: 138 FTERAFLNDKIDLAQAEAIADLIDASTEAAARGASRSLSGDFSREIHTLRDALVHLRMLV 197
Query: 178 EFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGK 237
E + DFPEE + L K D +L +K+ L +++Q+ + AL+R G+ VV+ GQPN GK
Sbjct: 198 EATLDFPEEEIDF-LRKADASGQLSNLKRSLARVMQRASQGALLREGIKVVIAGQPNAGK 256
Query: 238 SSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVE 297
SSL N+L G+++AIVT IAGTTRDK+ +TIQI + DTAG ++++ +EVE
Sbjct: 257 SSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAG-------LRESDDEVE 309
Query: 298 KIGIERTWVELKNSDIIIYVQD-ARYD--KHTDFDKKIIKN----FPMNIPVIYVWNKID 350
+IGI R W E+ +D ++++ D R+ ++ D D I P +PV+ VWNK D
Sbjct: 310 RIGIARAWDEIAGADAVLFLHDLTRWGSAQYQDDDAAIAHTLSNRLPAGVPVVDVWNKAD 369
Query: 351 YSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLN 410
+ + + LSA G++ LR LL I Q+ Y+AR RHI +L
Sbjct: 370 AAPQAAAPAREGESQAVLLSARTGQGLDTLRRQLLQ-IAGWQSAAEGVYIARARHIEALR 428
Query: 411 EANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCI 470
+ +L ++ Q E + L+L+AE+LR L++I G+ T++DLL IFS FCI
Sbjct: 429 AVDAHL---MEAAAQLESDG-PALDLLAEELRLAQNALNTITGEFTSDDLLGVIFSSFCI 484
Query: 471 GK 472
GK
Sbjct: 485 GK 486
>gi|421749571|ref|ZP_16186985.1| tRNA modification GTPase TrmE [Cupriavidus necator HPC(L)]
gi|409771534|gb|EKN53800.1| tRNA modification GTPase TrmE [Cupriavidus necator HPC(L)]
Length = 477
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 216/483 (44%), Positives = 309/483 (63%), Gaps = 33/483 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT PGRGG+G++R+SG +I VC + L PR ATY F +ID G+
Sbjct: 10 IAAIATAPGRGGIGVVRVSGPEAGTIARAVCGQP---LTPRRATYLPFLDGKGEVIDHGI 66
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F PHSYTGEDV+EL GHGGP+++ MLL+ CL+ G+ +GLRLA PGEFT+RAFLN+K
Sbjct: 67 ALFFPGPHSYTGEDVLELQGHGGPVVMQMLLTRCLQAGREVGLRLAEPGEFTRRAFLNDK 126
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EA+ DLI ASTE+AA+SA S+ G FS+ I L++++I+LR L+E + DFPEE
Sbjct: 127 LDLAQAEAVADLIEASTEAAARSAARSMEGAFSQAIRALVEQVIHLRMLVEATLDFPEEE 186
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +D +L I+ L ++ Q ++ +L+R GL+VVL GQPNVGKSSL N+L G+
Sbjct: 187 IDF-LEASDARGQLDTIRTALGGVLAQARQGSLLREGLSVVLAGQPNVGKSSLLNALAGA 245
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
++AIVT IAGTTRD++ +TIQI I DTAG+ + ++EVE+IGIERTW
Sbjct: 246 ELAIVTPIAGTTRDRVRETIQIEGIPLHIIDTAGLRE------DAVDEVERIGIERTWEA 299
Query: 308 LKNSDIIIYVQDAR-YDKH------TDFDKKIIKNFPMNIPVIYVWNKID---------Y 351
+ +D+++++ DA Y +H D ++ + P P++ V NKID +
Sbjct: 300 IGRADVVLHLIDATDYLQHGLSEIDDAIDDRLSGHLPPGAPILRVVNKIDLAPAVGAITF 359
Query: 352 SGHQKNINYKN--NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSL 409
G++ ++ N N I++SA GI+LLR LL +I Q +LARERH+++L
Sbjct: 360 GGNRPHVVVANGPNPTEIWISARTGAGIDLLRRELLRVI-GWQAGNEGAFLARERHLNAL 418
Query: 410 NEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFC 469
A +L A + +Q +K L+L AE+LR E L+SI G+ T++DLL IF++FC
Sbjct: 419 RSAQSHLDLAAERADQQ----DKALDLFAEELRLAQEHLNSITGEFTSDDLLGTIFTRFC 474
Query: 470 IGK 472
IGK
Sbjct: 475 IGK 477
>gi|393775040|ref|ZP_10363354.1| tRNA modification GTPase TrmE [Ralstonia sp. PBA]
gi|392717617|gb|EIZ05177.1| tRNA modification GTPase TrmE [Ralstonia sp. PBA]
Length = 479
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 222/495 (44%), Positives = 314/495 (63%), Gaps = 39/495 (7%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-----GKNLWSIVEIVCKKTKKQLKPRFATYSSF 55
M PI+ IAT PGRGG+G++RLS + ++E VC + L+PR A Y F
Sbjct: 1 MTVSAPPIVAIATAPGRGGIGVVRLSFGSLDAAAIAPLIEGVCGQA---LEPRHAHYLGF 57
Query: 56 FCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMP 115
+ ++ID+GL +YF APHSYTGE V+EL GHGGP+++ +LL+ CL +G SIGLRLA P
Sbjct: 58 RDDDGSVIDRGLALYFPAPHSYTGETVLELQGHGGPVVMQLLLARCLRLGDSIGLRLAEP 117
Query: 116 GEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRT 175
GEFT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA S+ G FS ++ L+DK+I+LR
Sbjct: 118 GEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAARSMDGAFSDAVHALVDKVIHLRM 177
Query: 176 LIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235
L+E + DFPEE + + N +L +I+ +L +++Q + AL+R GLNVVL GQPNV
Sbjct: 178 LVEATLDFPEEEIDFLEAAN-ARGQLAEIQTQLADVLRQSTQGALLREGLNVVLAGQPNV 236
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKSSL N+L G+++AIVT I GTTRDK+ +TIQI I DTAG+ D +E
Sbjct: 237 GKSSLLNALAGAELAIVTPIPGTTRDKVQQTIQIEGIPLNIVDTAGLRDTQ-------DE 289
Query: 296 VEKIGIERTWVELKNSDIIIYVQDA-RYDKH------TDFDKKIIKNFPMNIPVIYVWNK 348
VE+IGI+ TW + +D+++++ DA Y +H + + +I P P++ V NK
Sbjct: 290 VERIGIQHTWDAIGKADVVLHLIDAPSYAQHGLSAADDEINDRIAGMIPAGTPILRVVNK 349
Query: 349 ID---------YSGHQKNINYKN--NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESS 397
ID + G++ ++ N N I++SA + GI+LLR TLL + Q
Sbjct: 350 IDLAPAAGDMTFGGNRPHVVAANGPNPTEIWVSAKQNKGIDLLRATLLR-VAGWQAGGGG 408
Query: 398 PYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTT 457
YLARERH+ +L A YL A N+ ++L+L AE+LR E+L+SI G+ T+
Sbjct: 409 VYLARERHLVALRAAQRYLREAEDRANEQ----AQSLDLFAEELRLAQEQLNSITGEFTS 464
Query: 458 NDLLDNIFSQFCIGK 472
+DLL IF++FCIGK
Sbjct: 465 DDLLGVIFTRFCIGK 479
>gi|161723129|ref|YP_443727.2| tRNA modification GTPase TrmE [Burkholderia thailandensis E264]
gi|167620891|ref|ZP_02389522.1| tRNA modification GTPase TrmE [Burkholderia thailandensis Bt4]
gi|205829163|sp|Q2STM2.2|MNME_BURTA RecName: Full=tRNA modification GTPase MnmE
Length = 467
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 215/480 (44%), Positives = 310/480 (64%), Gaps = 22/480 (4%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-GK-NLWSIVEIVCKKTKKQLKPRFATYSSFFCK 58
+ T + PI+ IAT GRGG+G++R+S G+ + + + +L PR A+Y F
Sbjct: 2 LATDSDPIVAIATASGRGGIGVVRISLGRAGEAAALALSDALCGARLTPRHASYVPFLDG 61
Query: 59 NNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEF 118
+D+G+ +YF APHSYTGE V+EL GHGGPI+L ++L CL+ G++ GLRLA PGEF
Sbjct: 62 AGEPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVLQLVLQRCLDAGRAYGLRLAEPGEF 121
Query: 119 TKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIE 178
T+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L+D +I LR L+E
Sbjct: 122 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVDDVIALRMLVE 181
Query: 179 FSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKS 238
+ DFPEE + L D +L I+++L ++ ++ AL+R GL+VVL GQPNVGKS
Sbjct: 182 ATLDFPEEEIDF-LEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGKS 240
Query: 239 SLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEK 298
SL N+L G+++AIVT IAGTTRDK+ +TIQ+ I DTAG +++ +EVEK
Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAG-------LRETEDEVEK 293
Query: 299 IGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
IGI RTW E++ +D+++++ DAR D D+ I FP +PV+ V NK D + ++
Sbjct: 294 IGIARTWGEIERADVVLHLLDARSGLGPD-DEAIAARFPAGVPVVRVLNKTDLTEAPASV 352
Query: 359 NY------KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEA 412
+ ++ + LSA + GI+LLR LL I Q S YLARERH+ +L A
Sbjct: 353 ARVGSGAERADLCEVRLSAKRGDGIDLLRGELLR-IAGWQAGAESVYLARERHLIALRAA 411
Query: 413 NYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ A + +Q+ + L+L AE+LR E+L+SI G+ +++DLL IFS+FCIGK
Sbjct: 412 QAHVARAAEHADQN----AQALDLFAEELRLAQEQLNSITGEFSSDDLLGVIFSRFCIGK 467
>gi|167834937|ref|ZP_02461820.1| tRNA modification GTPase TrmE [Burkholderia thailandensis MSMB43]
Length = 467
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 216/480 (45%), Positives = 309/480 (64%), Gaps = 22/480 (4%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-GK-NLWSIVEIVCKKTKKQLKPRFATYSSFFCK 58
+ T + I+ IAT GRGG+G++R+S G+ + + + +L PR A+Y F
Sbjct: 2 LATDSDSIVAIATASGRGGIGVVRISFGRAGEAAALALSEALCGARLAPRHASYVPFLDG 61
Query: 59 NNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEF 118
+D+G+ +YF APHSYTGE V+EL GHGGPI+L +LL CL+ G++ GLRLA PGEF
Sbjct: 62 AGEPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVLQLLLQRCLDAGRAYGLRLAEPGEF 121
Query: 119 TKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIE 178
T+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ +++L+D +I LR L+E
Sbjct: 122 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGVFSRDVHVLVDDVIALRMLVE 181
Query: 179 FSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKS 238
+ DFPEE + L D +L I+++L ++ ++ AL+R GL+VVL GQPNVGKS
Sbjct: 182 ATLDFPEEEIDF-LEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGKS 240
Query: 239 SLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEK 298
SL N+L G+++AIVT IAGTTRDK+ +TIQ+ I DTAG +++ +EVEK
Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIVDTAG-------LRETEDEVEK 293
Query: 299 IGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
IGI RTW E++ +D+++++ DAR + D D+ I FP +PV+ V NK D + ++
Sbjct: 294 IGIARTWGEIERADVVLHLLDARSGRGPD-DEVIAARFPAGVPVVRVLNKTDLTDAPASV 352
Query: 359 NYKN------NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEA 412
++ + LSA + GI+LLR LL I Q S YLARERH+ +L A
Sbjct: 353 ARVGGGAACADVCEVRLSAKRGDGIDLLRGELLR-IAGWQAGAESVYLARERHLIALRAA 411
Query: 413 NYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A +Q+ + L+L AE+LR E+L+SI G+ T++DLL IFS+FCIGK
Sbjct: 412 QAHLARAAGHADQN----AQALDLFAEELRLAQEQLNSITGEFTSDDLLGVIFSRFCIGK 467
>gi|167568262|ref|ZP_02361136.1| tRNA modification GTPase TrmE [Burkholderia oklahomensis C6786]
Length = 467
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 217/480 (45%), Positives = 307/480 (63%), Gaps = 22/480 (4%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-GKNLWSIVEIVCKK-TKKQLKPRFATYSSFFCK 58
+ T + PI+ IAT GRGG+G++R+S G+ + + +L PR A+Y F
Sbjct: 2 LATDSDPIVAIATASGRGGIGVVRISLGRAAEAAALALSDALCGTRLAPRHASYVPFLDG 61
Query: 59 NNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEF 118
+D+G+ +YF APHSYTGE V+EL GHGGPI+L ++L CL+ G++ GLRLA PGEF
Sbjct: 62 AGEPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVLQLVLQRCLDAGRAYGLRLAEPGEF 121
Query: 119 TKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIE 178
T+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L+D +I LR L+E
Sbjct: 122 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVDDVIALRMLVE 181
Query: 179 FSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKS 238
+ DFPEE + L D +L I+++L ++ ++ AL+R GL+VVL GQPNVGKS
Sbjct: 182 ATLDFPEEEIDF-LEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGKS 240
Query: 239 SLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEK 298
SL N+L G+++AIVT IAGTTRDK+ +TIQ+ I DTAG +++ +EVEK
Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAG-------LRETEDEVEK 293
Query: 299 IGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
IGI RTW E++ +D+++++ DAR D D+ I FP +PV+ V NK D + ++
Sbjct: 294 IGIARTWGEIERADVVLHLLDARSRLGAD-DQAIAARFPAGVPVVRVLNKTDLTDVPASV 352
Query: 359 N------YKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEA 412
+ + LSA + GI+LLR LL I Q S YLARERH+ +L A
Sbjct: 353 ARGGGGEGGAEVCEVRLSAKRGDGIDLLRGELLR-IAGWQAGAESVYLARERHLIALRAA 411
Query: 413 NYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A + +Q+ + L+L AE+LR E+L+SI G+ T++DLL IFS+FCIGK
Sbjct: 412 QAHLARAAEHADQN----AQALDLFAEELRLAQEQLNSITGEFTSDDLLGVIFSRFCIGK 467
>gi|167582764|ref|ZP_02375638.1| tRNA modification GTPase TrmE [Burkholderia thailandensis TXDOH]
Length = 467
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 216/480 (45%), Positives = 310/480 (64%), Gaps = 22/480 (4%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-GK-NLWSIVEIVCKKTKKQLKPRFATYSSFFCK 58
+ T + PI+ IAT GRGG+G++R+S G+ + + + +L PR A+Y F
Sbjct: 2 LATDSDPIVAIATASGRGGIGVVRISLGRAGEAAALALSDALCGARLTPRHASYVPFLDG 61
Query: 59 NNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEF 118
+D+G+ +YF APHSYTGE V+EL GHGGPI+L ++L CL+ G++ GLRLA PGEF
Sbjct: 62 AGEPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVLQLVLQRCLDAGRAYGLRLAEPGEF 121
Query: 119 TKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIE 178
T+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L+D +I LR L+E
Sbjct: 122 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVDDVIALRMLVE 181
Query: 179 FSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKS 238
+ DFPEE + L D +L I+++L ++ ++ AL+R GL+VVL GQPNVGKS
Sbjct: 182 ATLDFPEEEIDF-LEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGKS 240
Query: 239 SLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEK 298
SL N+L G+++AIVT IAGTTRDK+ +TIQ+ I DTAG +++ +EVEK
Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAG-------LRETEDEVEK 293
Query: 299 IGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
IGI RTW E++ +D+++++ DAR D D+ I FP +PV+ V NK D + ++
Sbjct: 294 IGIARTWGEIERADVVLHLLDARSGLGPD-DEAIAARFPAGVPVVRVLNKTDLTEAPASV 352
Query: 359 NY------KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEA 412
+ ++ + LSA + GI+LLR LL I Q S YLARERH+ +L A
Sbjct: 353 ARVGGGAERADLCEVRLSAKRGDGIDLLRGELLR-IAGWQAGAESVYLARERHLIALRAA 411
Query: 413 NYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A + +Q+ + L+L AE+LR E+L+SI G+ +++DLL IFS+FCIGK
Sbjct: 412 QAHLARAAEHADQN----AQALDLFAEELRLAQEQLNSITGEFSSDDLLGVIFSRFCIGK 467
>gi|167560998|ref|ZP_02353914.1| tRNA modification GTPase TrmE [Burkholderia oklahomensis EO147]
Length = 467
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 217/480 (45%), Positives = 307/480 (63%), Gaps = 22/480 (4%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-GKNLWSIVEIVCKK-TKKQLKPRFATYSSFFCK 58
+ T + PI+ IAT GRGG+G++R+S G+ + + +L PR A+Y F
Sbjct: 2 LATDSDPIVAIATASGRGGIGVVRISLGRAAEAAALALSDALCGTRLAPRHASYVPFLDG 61
Query: 59 NNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEF 118
+D+G+ +YF APHSYTGE V+EL GHGGPI+L ++L CL+ G++ GLRLA PGEF
Sbjct: 62 AGEPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVLQLVLQRCLDAGRAYGLRLAEPGEF 121
Query: 119 TKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIE 178
T+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L+D +I LR L+E
Sbjct: 122 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHTLVDDVIALRMLVE 181
Query: 179 FSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKS 238
+ DFPEE + L D +L I+++L ++ ++ AL+R GL+VVL GQPNVGKS
Sbjct: 182 ATLDFPEEEIDF-LEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGKS 240
Query: 239 SLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEK 298
SL N+L G+++AIVT IAGTTRDK+ +TIQ+ I DTAG +++ +EVEK
Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAG-------LRETEDEVEK 293
Query: 299 IGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
IGI RTW E++ +D+++++ DAR D D+ I FP +PV+ V NK D + ++
Sbjct: 294 IGIARTWGEIERADVVLHLLDARSRLGAD-DQAIAARFPAGVPVVRVLNKTDLTDVPASV 352
Query: 359 N------YKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEA 412
+ + LSA + GI+LLR LL I Q S YLARERH+ +L A
Sbjct: 353 ARGGGEEGGAEVCEVRLSAKRGDGIDLLRGELLR-IAGWQAGAESVYLARERHLIALRAA 411
Query: 413 NYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A + +Q+ + L+L AE+LR E+L+SI G+ T++DLL IFS+FCIGK
Sbjct: 412 QAHLARAAEHADQN----AQALDLFAEELRLAQEQLNSITGEFTSDDLLGVIFSRFCIGK 467
>gi|120613418|ref|YP_973096.1| tRNA modification GTPase TrmE [Acidovorax citrulli AAC00-1]
gi|205829049|sp|A1TWI4.1|MNME_ACIAC RecName: Full=tRNA modification GTPase MnmE
gi|120591882|gb|ABM35322.1| tRNA modification GTPase trmE [Acidovorax citrulli AAC00-1]
Length = 482
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 211/498 (42%), Positives = 306/498 (61%), Gaps = 42/498 (8%)
Query: 1 MLTKNS-PIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKN 59
ML +++ PI IAT PGRG VGI+R+SG+ + +VE +C + L+PR ATY F
Sbjct: 1 MLPRHTDPIAAIATAPGRGAVGIVRVSGRGIGPLVEALCGRA---LRPREATYLPFRDAG 57
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSI----------G 109
ID+GL +YF APHSYTGEDV+EL HGGP++L +LL+ CL+ G
Sbjct: 58 GQAIDQGLALYFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLQAAGEADRATGRPRLPG 117
Query: 110 LRLAMPGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDK 169
LRLA PGEFT+RAFLN+K+DL Q EAI DLI+ASTE+AA+SA SL+G FS I+ L D
Sbjct: 118 LRLARPGEFTERAFLNDKIDLAQAEAIADLIDASTEAAARSASRSLAGAFSDEIHRLRDA 177
Query: 170 LINLRTLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVL 229
L++LR L+E + DFPEE + L K D +L +++ L +++ + ++ AL+R G+ VV+
Sbjct: 178 LVHLRMLVEATLDFPEEEIDF-LRKADAHGQLAALQRTLAEVMGRTRQGALLREGIKVVI 236
Query: 230 IGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKI 289
GQPN GKSSL N+L G+++AIVT IAGTTRDK+ +TIQI + DTAG +
Sbjct: 237 AGQPNAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAG-------L 289
Query: 290 KKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFD-------KKIIKNFPMNIPV 342
+++ +EVE+IGIER W E+ +D ++++ D D++ ++ + P ++PV
Sbjct: 290 RESDDEVERIGIERAWQEIAAADAVLFLHDLTRAGQPDYEAADAEIAARLARMAPAHVPV 349
Query: 343 IYVWNKIDYS--------GHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTI 394
+ VWNK D + G + A + LSA G++ LR LLD I Q+
Sbjct: 350 VDVWNKSDRAEGSAAAGQGGVATASASGRAAAVRLSARTGEGLDGLRRVLLD-IAGWQSA 408
Query: 395 ESSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGK 454
Y AR RH+ +L + +L ++ Q + + L+L+AE+LR + L++I G+
Sbjct: 409 PEGIYTARARHLEALRAVDMHL---MEAAAQLQCDG-PALDLLAEELRLAQQALNAITGE 464
Query: 455 STTNDLLDNIFSQFCIGK 472
T++DLL IFS FCIGK
Sbjct: 465 FTSDDLLGVIFSSFCIGK 482
>gi|393758338|ref|ZP_10347161.1| tRNA modification GTPase TrmE [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
gi|393165126|gb|EJC65176.1| tRNA modification GTPase TrmE [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
Length = 457
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 222/474 (46%), Positives = 314/474 (66%), Gaps = 20/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ +SPI+ IAT PGRGG+G+IR+SGK L ++++ + +T L+ R A + F
Sbjct: 1 MSSSSPIVAIATAPGRGGIGVIRVSGKELDTLIQTLFGRT---LQARHAHFLPFKDAQGQ 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
ID+G+ ++FK PHSYTGEDV+EL GHGGP +L LL CLE GK +GLRLA PGEFT+R
Sbjct: 58 AIDEGIALFFKGPHSYTGEDVLELQGHGGPAVLRRLLDRCLEAGKEMGLRLAEPGEFTQR 117
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN++LDL Q EA+ DLI+AS+E+AA+SA+ SLSG FS +N L D++I+LR L+E +
Sbjct: 118 AFLNDRLDLAQAEAVADLIDASSEAAARSAVASLSGVFSNKVNALADRIIHLRMLVEATL 177
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFPEE + L K L I+ +L I+Q ++ A++R GL+VVL GQPNVGKSSL
Sbjct: 178 DFPEEEIDF-LEKYQAAATLQGIQDELESILQHSRQGAILREGLHVVLAGQPNVGKSSLL 236
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G DVAIVT IAGTTRD++ + I I+ I DTAG +++ + VE+IGI
Sbjct: 237 NALAGEDVAIVTDIAGTTRDRVMQLIHIDGIPLHIVDTAG-------LRETEDTVERIGI 289
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDY--SGHQKNIN 359
RTW E+ +++I+++ DAR + + D I P ++PV+ V+NKID + Q +
Sbjct: 290 ARTWDEIAKANVIVHLLDAR-NPQDELDSAITTRLPSHVPVLRVYNKIDLLSAEQQAALP 348
Query: 360 YKNNIANIY-LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ + A + +SA K +G++ LR TLLD+ E SP+LARERH+ +L A Y+LS
Sbjct: 349 AQESGATVLPISARKDVGLDTLRRTLLDIAGWNPGSE-SPWLARERHLRALERAEYHLSL 407
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
A + S ++ L+L AE+LR H L SI G+ +++DLL IFS FCIGK
Sbjct: 408 AAEHATHS----DQVLDLFAEELRLAHLDLCSITGEFSSDDLLGEIFSSFCIGK 457
>gi|73543138|ref|YP_297658.1| tRNA modification GTPase TrmE [Ralstonia eutropha JMP134]
gi|123623715|sp|Q46VM0.1|MNME_CUPPJ RecName: Full=tRNA modification GTPase MnmE
gi|72120551|gb|AAZ62814.1| tRNA modification GTPase trmE [Ralstonia eutropha JMP134]
Length = 475
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 224/490 (45%), Positives = 317/490 (64%), Gaps = 33/490 (6%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M PI IAT PGRGG+G++R+SG ++ ++ +C + LKPR ATY F +
Sbjct: 1 MTAPLPPIAAIATAPGRGGIGVVRVSGPDVRPVMHAICGQA---LKPRHATYLPFLDGHG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+ID GL +YF P+SYTGE+V+EL GHGGP+++ MLL+ CL+ G IGLRLA PGEFT+
Sbjct: 58 KVIDHGLALYFPGPNSYTGEEVLELQGHGGPVVMQMLLTRCLQAGHGIGLRLAEPGEFTR 117
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EA+ DLI ASTE+AA+SA S+ G+FS I+ L++K+I+LR L+E +
Sbjct: 118 RAFLNDKLDLAQAEAVADLIEASTEAAARSAARSMEGEFSHAIHTLVEKVIHLRMLVEAT 177
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + L +D +L I+ L ++ Q ++ AL+R GL+VVL GQPNVGKSSL
Sbjct: 178 LDFPEEEIDF-LEASDARGQLATIRNDLGNVLAQARQGALLREGLSVVLAGQPNVGKSSL 236
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G+++AIVT IAGTTRD++ +TIQI I DTAG+ D + +EVE+IG
Sbjct: 237 LNALAGAELAIVTPIAGTTRDRVKETIQIEGIPLHIIDTAGLRD------EATDEVERIG 290
Query: 301 IERTWVELKNSDIIIYVQDAR-YDKHT------DFDKKIIKNFPMNIPVIYVWNKID--- 350
IERTW ++ +DI++++ DA Y +H D ++ P P++ V NKID
Sbjct: 291 IERTWDAIRRADIVLHLVDATDYLRHGLSEIDDAIDDRLSGQLPPGAPIVRVVNKIDVAP 350
Query: 351 ------YSGHQKNINYKN--NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLAR 402
+SG++ ++ N N I++SA GI LLR LL L+ Q+ +LAR
Sbjct: 351 TVGGMMFSGNRPHVVAANGPNPTEIWISARTGSGIELLRKELLRLV-GWQSGNEGTFLAR 409
Query: 403 ERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLD 462
ERH+ +L +A +L A + QSE+ + L+L AE+LR E L+SI G+ T++DLL
Sbjct: 410 ERHLTALRQAQSHLDVAAE---QSERQAQA-LDLFAEELRLAQEHLNSITGEFTSDDLLG 465
Query: 463 NIFSQFCIGK 472
IF++FCIGK
Sbjct: 466 TIFTRFCIGK 475
>gi|424901674|ref|ZP_18325190.1| tRNA modification GTPase TrmE [Burkholderia thailandensis MSMB43]
gi|390932049|gb|EIP89449.1| tRNA modification GTPase TrmE [Burkholderia thailandensis MSMB43]
Length = 479
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 216/480 (45%), Positives = 309/480 (64%), Gaps = 22/480 (4%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-GK-NLWSIVEIVCKKTKKQLKPRFATYSSFFCK 58
+ T + I+ IAT GRGG+G++R+S G+ + + + +L PR A+Y F
Sbjct: 14 LATDSDSIVAIATASGRGGIGVVRISFGRAGEAAALALSEALCGARLAPRHASYVPFLDG 73
Query: 59 NNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEF 118
+D+G+ +YF APHSYTGE V+EL GHGGPI+L +LL CL+ G++ GLRLA PGEF
Sbjct: 74 AGEPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVLQLLLQRCLDAGRAYGLRLAEPGEF 133
Query: 119 TKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIE 178
T+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ +++L+D +I LR L+E
Sbjct: 134 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGVFSRDVHVLVDDVIALRMLVE 193
Query: 179 FSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKS 238
+ DFPEE + L D +L I+++L ++ ++ AL+R GL+VVL GQPNVGKS
Sbjct: 194 ATLDFPEEEIDF-LEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGKS 252
Query: 239 SLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEK 298
SL N+L G+++AIVT IAGTTRDK+ +TIQ+ I DTAG +++ +EVEK
Sbjct: 253 SLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIVDTAG-------LRETEDEVEK 305
Query: 299 IGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
IGI RTW E++ +D+++++ DAR + D D+ I FP +PV+ V NK D + ++
Sbjct: 306 IGIARTWGEIERADVVLHLLDARSGRGPD-DEVIAARFPAGVPVVRVLNKTDLTDAPASV 364
Query: 359 NYKN------NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEA 412
++ + LSA + GI+LLR LL I Q S YLARERH+ +L A
Sbjct: 365 ARVGGGAACADVCEVRLSAKRGDGIDLLRGELLR-IAGWQAGAESVYLARERHLIALRAA 423
Query: 413 NYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A +Q+ + L+L AE+LR E+L+SI G+ T++DLL IFS+FCIGK
Sbjct: 424 QAHLARAAGHADQN----AQALDLFAEELRLAQEQLNSITGEFTSDDLLGVIFSRFCIGK 479
>gi|222112656|ref|YP_002554920.1| tRNA modification GTPase trme [Acidovorax ebreus TPSY]
gi|221732100|gb|ACM34920.1| tRNA modification GTPase TrmE [Acidovorax ebreus TPSY]
Length = 467
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 217/483 (44%), Positives = 304/483 (62%), Gaps = 27/483 (5%)
Query: 1 MLTKNS-PIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKN 59
ML ++S PI+ IAT PGRG VGI+R+SGK + ++V+ +C + LKPR ATY F
Sbjct: 1 MLPRHSDPIVAIATAPGRGAVGIVRVSGKQIGALVQALCGRA---LKPREATYLPFRDAA 57
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEI---GKSIGLRLAMPG 116
ID+GL +YF APHSYTGEDV+EL HGGP++L +LL+ CLE G LRLA PG
Sbjct: 58 GQAIDQGLALYFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAATGGVLDRLRLAEPG 117
Query: 117 EFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTL 176
EFT+RAFLNNK+DL Q EAI DLI+ASTE+AA+ A SLSG FS+ I+ L D L++LR L
Sbjct: 118 EFTERAFLNNKIDLAQAEAIADLIDASTEAAARGASRSLSGDFSREIHTLRDALVHLRML 177
Query: 177 IEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVG 236
+E + DFPEE + L K D +L +++ L +++Q+ + AL+R G+ VV+ GQPN G
Sbjct: 178 VEATLDFPEEEIDF-LRKADARGQLSNLQQSLARVMQRAGQGALLREGIKVVIAGQPNAG 236
Query: 237 KSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEV 296
KSSL N+L G+++AIVT IAGTTRDK+ +TIQI + DTAG ++++ +EV
Sbjct: 237 KSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAG-------LRESDDEV 289
Query: 297 EKIGIERTWVELKNSDIIIYVQD-ARYD--KHTDFDKKIIKN----FPMNIPVIYVWNKI 349
E+IGI R W E+ +D ++++ D R+ ++ D D I P +PV+ VWNK
Sbjct: 290 ERIGIARAWDEIAGADAVLFLHDLTRWGSAQYQDDDAAIAHTLSTRLPAGVPVVDVWNKA 349
Query: 350 DYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSL 409
D + + + LSA G++ LR LL I Q+ Y+AR RHI +L
Sbjct: 350 DAAPQAAAPAREGESQAVLLSARTGQGLDTLRRQLLQ-IAGWQSAAEGVYIARARHIEAL 408
Query: 410 NEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFC 469
+ +L ++ Q E + L+L+AE+LR L++I G+ T++DLL IFS FC
Sbjct: 409 RAVDAHL---MEAAAQLESDG-PALDLLAEELRLAQNALNTITGEFTSDDLLGVIFSSFC 464
Query: 470 IGK 472
IGK
Sbjct: 465 IGK 467
>gi|83655357|gb|ABC39420.1| tRNA modification GTPase TrmE [Burkholderia thailandensis E264]
Length = 540
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 215/480 (44%), Positives = 310/480 (64%), Gaps = 22/480 (4%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-GK-NLWSIVEIVCKKTKKQLKPRFATYSSFFCK 58
+ T + PI+ IAT GRGG+G++R+S G+ + + + +L PR A+Y F
Sbjct: 75 LATDSDPIVAIATASGRGGIGVVRISLGRAGEAAALALSDALCGARLTPRHASYVPFLDG 134
Query: 59 NNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEF 118
+D+G+ +YF APHSYTGE V+EL GHGGPI+L ++L CL+ G++ GLRLA PGEF
Sbjct: 135 AGEPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVLQLVLQRCLDAGRAYGLRLAEPGEF 194
Query: 119 TKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIE 178
T+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L+D +I LR L+E
Sbjct: 195 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVDDVIALRMLVE 254
Query: 179 FSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKS 238
+ DFPEE + L D +L I+++L ++ ++ AL+R GL+VVL GQPNVGKS
Sbjct: 255 ATLDFPEEEIDF-LEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGKS 313
Query: 239 SLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEK 298
SL N+L G+++AIVT IAGTTRDK+ +TIQ+ I DTAG +++ +EVEK
Sbjct: 314 SLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAG-------LRETEDEVEK 366
Query: 299 IGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
IGI RTW E++ +D+++++ DAR D D+ I FP +PV+ V NK D + ++
Sbjct: 367 IGIARTWGEIERADVVLHLLDARSGLGPD-DEAIAARFPAGVPVVRVLNKTDLTEAPASV 425
Query: 359 NY------KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEA 412
+ ++ + LSA + GI+LLR LL I Q S YLARERH+ +L A
Sbjct: 426 ARVGSGAERADLCEVRLSAKRGDGIDLLRGELLR-IAGWQAGAESVYLARERHLIALRAA 484
Query: 413 NYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ A + +Q+ + L+L AE+LR E+L+SI G+ +++DLL IFS+FCIGK
Sbjct: 485 QAHVARAAEHADQN----AQALDLFAEELRLAQEQLNSITGEFSSDDLLGVIFSRFCIGK 540
>gi|452126738|ref|ZP_21939321.1| tRNA modification GTPase TrmE [Bordetella holmesii F627]
gi|452130113|ref|ZP_21942686.1| tRNA modification GTPase TrmE [Bordetella holmesii H558]
gi|451921833|gb|EMD71978.1| tRNA modification GTPase TrmE [Bordetella holmesii F627]
gi|451922973|gb|EMD73117.1| tRNA modification GTPase TrmE [Bordetella holmesii H558]
Length = 450
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 216/466 (46%), Positives = 298/466 (63%), Gaps = 21/466 (4%)
Query: 7 PIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKG 66
PI IAT PGRGG+G++R+SG +L + V + + +L PR A Y F + ID+G
Sbjct: 6 PIAAIATAPGRGGIGVVRVSGPSLHTYVRALLGR---ELAPRHAHYLPFTDAHGQAIDEG 62
Query: 67 LVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNN 126
+ IYF+ P SYTGEDV+EL GHGGP +L LL+ CLE G+ IGLRLA PGEFT+RAFLN+
Sbjct: 63 IAIYFRGPSSYTGEDVLELQGHGGPAVLKRLLARCLEAGRDIGLRLAEPGEFTRRAFLND 122
Query: 127 KLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEE 186
++DL Q EA+ DLI+AS+E+AA+ AM SLSG+FS+ + L D++++LR L+E + DFPEE
Sbjct: 123 RIDLAQAEAVADLIDASSEAAARGAMASLSGEFSQRVTALADRIVHLRMLVEATLDFPEE 182
Query: 187 NQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVG 246
+ L K L ++ L +I Q ++ ++R GL+VVL GQPNVGKSSL N+L G
Sbjct: 183 EIDF-LEKYQARPTLDGLRTDLDTLIVQARQGVILREGLHVVLAGQPNVGKSSLLNALAG 241
Query: 247 SDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWV 306
DVAIVT IAGTTRDK+ + I I+ I DTAG+ D + VE IGI R+W
Sbjct: 242 DDVAIVTPIAGTTRDKVVQEIHIDGVPLHIVDTAGLRDTE-------DTVESIGIARSWK 294
Query: 307 ELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIAN 366
E++ +D+I+++QDA D +I P PV+ V NKID + +
Sbjct: 295 EIERADVILHLQDASAPGDI-LDAEITARLPARTPVLTVLNKIDL----LTLPAELRADQ 349
Query: 367 IYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQS 426
I +SA + +G++ LR LL L E SP+LARERH+H+L A+ +L I ++ S
Sbjct: 350 IGISAKQGLGLDALRARLLRLAGWNPGAE-SPWLARERHLHALQAAHEHLD--IAALHAS 406
Query: 427 EKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + L+L AE+LR H+ LSSI G+ T++DLL IFS FCIGK
Sbjct: 407 HDD--RVLDLFAEELRLAHDSLSSITGRFTSDDLLGEIFSSFCIGK 450
>gi|424778673|ref|ZP_18205617.1| tRNA modification GTPase TrmE [Alcaligenes sp. HPC1271]
gi|422886491|gb|EKU28909.1| tRNA modification GTPase TrmE [Alcaligenes sp. HPC1271]
Length = 457
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 222/474 (46%), Positives = 313/474 (66%), Gaps = 20/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ +SPI+ IAT PGRGG+G+IR+SGK L ++++ + +T L+ R A + F
Sbjct: 1 MSSSSPIVAIATAPGRGGIGVIRVSGKELDALIQTLFGRT---LQARHAHFLPFKDAQGE 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
ID+G+ ++FK PHSYTGEDV+EL GHGGP +L LL CLE GK GLRLA PGEFT+R
Sbjct: 58 AIDEGIALFFKGPHSYTGEDVLELQGHGGPAVLRRLLDRCLEAGKDQGLRLAEPGEFTQR 117
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN++LDL Q EA+ DLI+AS+E+AA+SA+ SLSG FS +N L D++I+LR L+E +
Sbjct: 118 AFLNDRLDLAQAEAVADLIDASSEAAARSAVASLSGVFSNNVNALADRIIHLRMLVEATL 177
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFPEE + L K L I+ +L +I+Q ++ A++R GL+VVL GQPNVGKSSL
Sbjct: 178 DFPEEEIDF-LEKYQAAATLQGIQDELERILQHSRQGAILREGLHVVLAGQPNVGKSSLL 236
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G DVAIVT IAGTTRD++ + I I+ I DTAG +++ + VE+IGI
Sbjct: 237 NALAGEDVAIVTDIAGTTRDRVMQLIHIDGIPLHIVDTAG-------LRETEDTVERIGI 289
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDY--SGHQKNIN 359
RTW E+ +++I+++ DAR + + D I P ++PV+ V+NKID + Q +
Sbjct: 290 ARTWDEIAKANVIVHLLDAR-NPQDELDSAITTRLPSHVPVLRVYNKIDLLTAEQQAALP 348
Query: 360 YKNNIANIY-LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ + A + +SA K IG++ LR TLLD+ E SP+LARERH+ +L A Y+L
Sbjct: 349 AQESGATVLPISARKDIGLDTLRRTLLDIAGWNPGSE-SPWLARERHLRALERAEYHLGL 407
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
A + S ++ L+L AE+LR H L SI G+ +++DLL IFS FCIGK
Sbjct: 408 AAEHATHS----DQVLDLFAEELRLAHLDLCSITGEFSSDDLLGEIFSSFCIGK 457
>gi|160901486|ref|YP_001567068.1| tRNA modification GTPase TrmE [Delftia acidovorans SPH-1]
gi|160367070|gb|ABX38683.1| tRNA modification GTPase TrmE [Delftia acidovorans SPH-1]
Length = 473
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 212/489 (43%), Positives = 300/489 (61%), Gaps = 33/489 (6%)
Query: 1 MLTK-NSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKN 59
ML + N PI IAT PGRG VGI+R+SGK + +V +C + LKPR ATY F
Sbjct: 1 MLPRHNDPIAAIATAPGRGAVGIVRVSGKGVAPLVRALCGR---DLKPREATYLPFRDAQ 57
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSI---------GL 110
ID GL ++F APHSYTGEDV+EL HGGP++L +LL+ CLE + GL
Sbjct: 58 GGPIDHGLALFFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAQDPREGHRSVLPGL 117
Query: 111 RLAMPGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKL 170
RLA PGEFT+RAFLN+K+DL Q EAI DLI+ASTE+AA+SA SLSG FS+ I+ L D L
Sbjct: 118 RLAQPGEFTERAFLNDKIDLAQAEAIADLIDASTEAAARSASRSLSGAFSEEIHGLRDAL 177
Query: 171 INLRTLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLI 230
++LR L+E + DFPEE + L K D +L +++ KL +++ + + AL+R G+ VV+
Sbjct: 178 VHLRMLVEATLDFPEEEIDF-LQKADASGQLARLRGKLDQVLSRAHQGALLREGIKVVIA 236
Query: 231 GQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIK 290
GQPN GKSSL N+L G+++AIVT IAGTTRDK+ +TIQI + DTAG ++
Sbjct: 237 GQPNAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAG-------LR 289
Query: 291 KNINEVEKIGIERTWVELKNSDIIIYVQD-ARYDKH------TDFDKKIIKNFPMNIPVI 343
++ +EVE+IGI R W E+ +D ++++ D R +H + + + P +PVI
Sbjct: 290 ESSDEVERIGIARAWDEIAAADAVLFLHDLTRMGEHDYLAADAAIAETLAQKLPRQVPVI 349
Query: 344 YVWNKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARE 403
VWNK D + + + ++ LSA G++ LR LLD + Q+ YLAR
Sbjct: 350 DVWNKTDRAEPARMQEHGGREGSVALSARTGDGLDALRRRLLD-VAGWQSAPEGLYLARA 408
Query: 404 RHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDN 463
RH+ +L ++ ++ +L+L+AE+LR L+SI G+ +++DLL
Sbjct: 409 RHVEALQ----AVAAHLQEAELQLAAQAAHLDLLAEELRLAQVSLNSITGEFSSDDLLGV 464
Query: 464 IFSQFCIGK 472
IFS FCIGK
Sbjct: 465 IFSSFCIGK 473
>gi|333917524|ref|YP_004491256.1| tRNA modification GTPase mnmE [Delftia sp. Cs1-4]
gi|333747724|gb|AEF92901.1| tRNA modification GTPase mnmE [Delftia sp. Cs1-4]
Length = 473
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 212/489 (43%), Positives = 301/489 (61%), Gaps = 33/489 (6%)
Query: 1 MLTK-NSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKN 59
ML + N PI IAT PGRG VGI+R+SGK + +V +C + LKPR ATY F
Sbjct: 1 MLPRHNDPIAAIATAPGRGAVGIVRVSGKGVAPLVRALCGR---DLKPREATYLPFRDAQ 57
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKS---------IGL 110
ID GL ++F APHSYTGEDV+EL HGGP++L +LL+ CLE ++ GL
Sbjct: 58 GGPIDHGLALFFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAQASAEGHRSVLPGL 117
Query: 111 RLAMPGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKL 170
RLA PGEFT+RAFLN+K+DL Q EAI DLI+ASTE+AA+SA SLSG FS+ I+ L D L
Sbjct: 118 RLAQPGEFTERAFLNDKIDLAQAEAIADLIDASTEAAARSASRSLSGAFSEEIHGLRDAL 177
Query: 171 INLRTLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLI 230
++LR L+E + DFPEE + L K D +L +++ KL +++ + + AL+R G+ VV+
Sbjct: 178 VHLRMLVEATLDFPEEEIDF-LQKADASGQLARLRGKLDQVLSRAHQGALLREGIKVVIA 236
Query: 231 GQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIK 290
GQPN GKSSL N+L G+++AIVT IAGTTRDK+ +TIQI + DTAG ++
Sbjct: 237 GQPNAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAG-------LR 289
Query: 291 KNINEVEKIGIERTWVELKNSDIIIYVQD-ARYDKH------TDFDKKIIKNFPMNIPVI 343
++ +EVE+IGI R W E+ +D ++++ D R +H + + + P +PVI
Sbjct: 290 ESSDEVERIGIARAWDEIAAADAVLFLHDLTRMGEHDYLAADAAIAETLAQKLPRQVPVI 349
Query: 344 YVWNKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARE 403
VWNK D + + + ++ LSA G++ LR LLD + Q+ YLAR
Sbjct: 350 DVWNKTDRAEPAQMQAHGGREGSVALSARTGDGLDALRRRLLD-VAGWQSAPEGLYLARA 408
Query: 404 RHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDN 463
RH+ +L ++ ++ +L+L+AE+LR L+SI G+ +++DLL
Sbjct: 409 RHVEALQ----AVAAHLQEAELQLAAQAAHLDLLAEELRLAQVSLNSITGEFSSDDLLGV 464
Query: 464 IFSQFCIGK 472
IFS FCIGK
Sbjct: 465 IFSSFCIGK 473
>gi|224827182|ref|ZP_03700277.1| tRNA modification GTPase TrmE [Pseudogulbenkiania ferrooxidans
2002]
gi|224600575|gb|EEG06763.1| tRNA modification GTPase TrmE [Pseudogulbenkiania ferrooxidans
2002]
Length = 450
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 209/465 (44%), Positives = 295/465 (63%), Gaps = 24/465 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT PGRGGVG+IR+SG+ L + + Q PR+ATYS F + ID GL
Sbjct: 10 ICAIATAPGRGGVGVIRVSGRGLLPFAQAISGGKTPQ--PRYATYSDFVAADGTAIDNGL 67
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++YF P+S+TGEDV+EL GHGGP++L+MLLS CLE+G RLA PGEFTKRAFLN+K
Sbjct: 68 MLYFPGPNSFTGEDVLELQGHGGPVVLNMLLSRCLELGA----RLAEPGEFTKRAFLNDK 123
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q E++ DLI+AS+E+AAKSA+ SL G FS I+ L+D+LI LR L+E + DFP+E
Sbjct: 124 LDLAQAESVADLIDASSETAAKSALKSLKGAFSHEIHQLVDELITLRMLVEATLDFPDEE 183
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L D +L ++ +L ++ ++ A++R G++VVL+GQPNVGKSSL N+L G
Sbjct: 184 IDF-LEAADARGKLGGVRARLSQVQATARQGAILREGMHVVLVGQPNVGKSSLLNALAGD 242
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
DVAIVT IAGTTRD + + I I+ + DTAG+ D + + VEKIGIERTW
Sbjct: 243 DVAIVTDIAGTTRDTLREEIVIDGVPVHVIDTAGLRDTD-------DVVEKIGIERTWQA 295
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANI 367
++ +D+++ + D+R + I+ P +P ++V+NK+D SG + ++ +
Sbjct: 296 VQRADLVLVLVDSREGVGAEV-SAILAKLPERLPRVFVFNKVDLSGEAPGLAEEDGHPVV 354
Query: 368 YLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSE 427
LSA G+ LLR LL++I E +LARERH+ ++ A +L+ A + Q
Sbjct: 355 RLSARTLAGVELLRAKLLEMIGYRGASEGV-FLARERHLDAIRRAAEHLALAETVWQQ-- 411
Query: 428 KNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+EL AE+LR LS + G+ T +DLL IFS+FCIGK
Sbjct: 412 ------VELFAEELRLAQHALSEVTGEFTPDDLLGVIFSRFCIGK 450
>gi|347541847|ref|YP_004849274.1| tRNA modification GTPase TrmE [Pseudogulbenkiania sp. NH8B]
gi|345645027|dbj|BAK78860.1| tRNA modification GTPase TrmE [Pseudogulbenkiania sp. NH8B]
Length = 450
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 209/465 (44%), Positives = 295/465 (63%), Gaps = 24/465 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT PGRGGVG+IR+SG+ L + + Q PR+ATYS F + ID GL
Sbjct: 10 ICAIATAPGRGGVGVIRVSGRGLLPFAQAISGGKTPQ--PRYATYSDFVATDGTAIDNGL 67
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++YF P+S+TGEDV+EL GHGGP++L+MLLS CLE+G RLA PGEFTKRAFLN+K
Sbjct: 68 MLYFPGPNSFTGEDVLELQGHGGPVVLNMLLSRCLELGA----RLAEPGEFTKRAFLNDK 123
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q E++ DLI+AS+E+AAKSA+ SL G FS I+ L+D+LI LR L+E + DFP+E
Sbjct: 124 LDLAQAESVADLIDASSETAAKSALKSLKGAFSHEIHQLVDELITLRMLVEATLDFPDEE 183
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L D +L ++ +L ++ ++ A++R G++VVL+GQPNVGKSSL N+L G
Sbjct: 184 IDF-LEAADARGKLGGVRARLSQVQATARQGAILREGMHVVLVGQPNVGKSSLLNALAGD 242
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
DVAIVT IAGTTRD + + I I+ + DTAG+ D + + VEKIGIERTW
Sbjct: 243 DVAIVTDIAGTTRDTLREEIVIDGVPVHVIDTAGLRDTD-------DVVEKIGIERTWQA 295
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANI 367
++ +D+++ + D+R + I+ P +P ++V+NK+D SG + ++ +
Sbjct: 296 VQRADLVLVLVDSREGVGAEV-SAILAKLPERLPRVFVFNKVDLSGDAPGLAEEDGHPVV 354
Query: 368 YLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSE 427
LSA G+ LLR LL++I E +LARERH+ ++ A +L+ A + Q
Sbjct: 355 RLSARTLAGVELLRAKLLEMIGYRGASEGV-FLARERHLDAIRRAAEHLALAETVWQQ-- 411
Query: 428 KNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+EL AE+LR LS + G+ T +DLL IFS+FCIGK
Sbjct: 412 ------VELFAEELRLAQHALSEVTGEFTPDDLLGVIFSRFCIGK 450
>gi|339324251|ref|YP_004683944.1| tRNA modification GTPase MnmE [Cupriavidus necator N-1]
gi|338164408|gb|AEI75463.1| tRNA modification GTPase MnmE [Cupriavidus necator N-1]
Length = 475
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 225/490 (45%), Positives = 318/490 (64%), Gaps = 33/490 (6%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M PI IAT PGRGG+G++R+SG N+ ++ VC + LKPR ATY F +
Sbjct: 1 MTAPQVPIAAIATAPGRGGIGVVRVSGPNVGPVMRAVCGQA---LKPRHATYLPFLDGHG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+ID GL +YF AP+SYTGE+V+EL GHGGP+++ MLL+ CL+ G IGLRLA PGEFT+
Sbjct: 58 KVIDHGLALYFPAPNSYTGEEVLELQGHGGPVVMQMLLTRCLQAGDGIGLRLAEPGEFTR 117
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EA+ DLI ASTE+AA+SA S+ G+FS I L+DK+I+LR L+E +
Sbjct: 118 RAFLNDKLDLAQAEAVADLIEASTEAAARSAARSMEGEFSNAIRQLVDKVIHLRMLVEAT 177
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + L ++D +L I+ +L ++ Q ++ AL+R GL+VVL GQPNVGKSSL
Sbjct: 178 LDFPEEEIDF-LEQSDARGQLATIRTELGGVLAQARQGALLREGLSVVLAGQPNVGKSSL 236
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G+++AIVT IAGTTRD++ +TIQI+ I DTAG+ + +EVE+IG
Sbjct: 237 LNALAGAELAIVTPIAGTTRDRVRETIQIDGIPLHIIDTAGL------REHAADEVERIG 290
Query: 301 IERTWVELKNSDIIIYVQDAR-YDKH----TD--FDKKIIKNFPMNIPVIYVWNKID--- 350
IERTW ++ +DI++++ DA Y +H TD D ++ P P++ + NKID
Sbjct: 291 IERTWDAIRRADIVLHLVDATDYLRHGLSETDDAIDDQLSGQLPPGSPIVRIVNKIDKAP 350
Query: 351 ------YSGHQKNINYKN--NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLAR 402
+ G++ ++ N N I++SA GI LLR LL L+ Q+ +LAR
Sbjct: 351 AVGDVVFGGNRPHVVAANGPNPTEIWISARTGAGIELLRRELLRLV-GWQSGNEGNFLAR 409
Query: 403 ERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLD 462
ERH+ +L A +L A + Q+E + L+L AE+LR + L+SI G+ T++DLL
Sbjct: 410 ERHLTALRNAQSHLDIAAE---QAEHQAQA-LDLFAEELRLAQDCLNSITGEFTSDDLLG 465
Query: 463 NIFSQFCIGK 472
IF++FCIGK
Sbjct: 466 TIFTRFCIGK 475
>gi|311109664|ref|YP_003982517.1| tRNA modification GTPase TrmE [Achromobacter xylosoxidans A8]
gi|310764353|gb|ADP19802.1| tRNA modification GTPase TrmE [Achromobacter xylosoxidans A8]
Length = 450
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 207/457 (45%), Positives = 291/457 (63%), Gaps = 21/457 (4%)
Query: 16 GRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPH 75
GRGG+G++R+SG +L E+V + +++L PR A Y F ++D+G+ IYF+APH
Sbjct: 15 GRGGIGVVRISGTDL---SELVRRLFQRELTPRHAHYLPFKSGAGELLDEGIAIYFRAPH 71
Query: 76 SYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVEA 135
SYTGEDV+EL GHGGP +L +L SCL G+ + +RLA PGEFT+RAFLN+++DL Q EA
Sbjct: 72 SYTGEDVLELQGHGGPAVLRRVLESCLAAGRDLDIRLAEPGEFTRRAFLNDRMDLAQAEA 131
Query: 136 IIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELILNKN 195
+ DLI AS+ +AA+ AM SLSG FS +N L D++I+LR L+E + DFPEE + L K
Sbjct: 132 VADLIEASSVAAARGAMASLSGDFSARVNDLSDRIIHLRMLVEATLDFPEEEIDF-LEKY 190
Query: 196 DFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSI 255
L + L K+I Q ++ ++R GL+VVL GQPNVGKSSL N+L G D+AIVT I
Sbjct: 191 QARPTLEALTADLSKLIAQARQGVILREGLHVVLAGQPNVGKSSLLNALAGDDIAIVTPI 250
Query: 256 AGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIII 315
AGTTRDK+ + I I+ I DTAG +++ + VE IGI RTW E++ +D+I+
Sbjct: 251 AGTTRDKVVQEIHIDGVPLHIVDTAG-------LRETEDTVESIGIARTWQEIERADVIL 303
Query: 316 YVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKRI 375
++QDA + D +I P PV+ V+NK+D + + + +SA +
Sbjct: 304 HLQDA-TQPGDELDAQITARLPPRTPVLKVFNKVDL----LSTPFAAGPQELGISAKRGA 358
Query: 376 GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLE 435
G++ LR LL + E SP+LARERH+H+L +A +L A Q ++ L+
Sbjct: 359 GLDELRAELLRIAGWNPGGE-SPWLARERHLHALQDAAEHLELAGAHAEQD----DRVLD 413
Query: 436 LIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L AE+LR H+ LSSI GK T++DLL IFS FCIGK
Sbjct: 414 LFAEELRLAHDSLSSITGKFTSDDLLGEIFSSFCIGK 450
>gi|359795266|ref|ZP_09297891.1| tRNA modification GTPase TrmE [Achromobacter arsenitoxydans SY8]
gi|359366685|gb|EHK68357.1| tRNA modification GTPase TrmE [Achromobacter arsenitoxydans SY8]
Length = 450
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 204/457 (44%), Positives = 292/457 (63%), Gaps = 21/457 (4%)
Query: 16 GRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPH 75
GRGG+G++R+SG +L +V + +++L PR A + F ++D+G+ +YF+APH
Sbjct: 15 GRGGIGVVRISGADLSGLVR---RLFQRELTPRHAHFLPFKSAAGELLDEGIALYFRAPH 71
Query: 76 SYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVEA 135
SYTGEDV+EL GHGGP +L +L +CL G+ +GLRLA PGEFT+RAFLN+++DL Q EA
Sbjct: 72 SYTGEDVLELQGHGGPAVLRRILDNCLAAGRDLGLRLAEPGEFTRRAFLNDRMDLAQAEA 131
Query: 136 IIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELILNKN 195
+ DLI AS+ +AA+ AM SLSG+FS +N L D++I+LR L+E + DFPEE + L K
Sbjct: 132 VADLIEASSVAAARGAMASLSGEFSARVNDLSDRIIHLRMLVEATLDFPEEEIDF-LEKY 190
Query: 196 DFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSI 255
L + L +I Q ++ ++R GL+VVL GQPNVGKSSL N+L G DVAIVT I
Sbjct: 191 QARPTLDALTADLSTLIAQARQGVILREGLHVVLAGQPNVGKSSLLNALAGDDVAIVTPI 250
Query: 256 AGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIII 315
AGTTRDK+ + I I+ I DTAG +++ + VE IGI RTW E++ +D+I+
Sbjct: 251 AGTTRDKVVQEIHIDGVPLHIVDTAG-------LRETEDTVESIGIARTWQEIERADVIL 303
Query: 316 YVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKRI 375
++QDA + D +I P PV+ V+NK+D + + + +SA +
Sbjct: 304 HLQDA-TQPGDELDAQITARLPARTPVLKVFNKVDL----LPAPFTASPGELGISAKRGA 358
Query: 376 GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLE 435
G++ LR LL + E SP+LARERH+H+L +A +L A + +Q ++ L+
Sbjct: 359 GLDGLRAELLRIAGWNPGGE-SPWLARERHLHALQDAAEHLDLAAQHASQD----DRVLD 413
Query: 436 LIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L AE+LR H+ LS I GK T++DLL IFS FCIGK
Sbjct: 414 LFAEELRLAHDSLSGITGKFTSDDLLGEIFSSFCIGK 450
>gi|113866134|ref|YP_724623.1| tRNA modification GTPase TrmE [Ralstonia eutropha H16]
gi|113524910|emb|CAJ91255.1| Predicted GTPase [Ralstonia eutropha H16]
Length = 488
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 224/490 (45%), Positives = 318/490 (64%), Gaps = 33/490 (6%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M PI IAT PGRGG+G++R+SG ++ ++ VC + LKPR ATY F +
Sbjct: 14 MTAPQVPIAAIATAPGRGGIGVVRVSGPDVGPVMRSVCGQA---LKPRHATYLPFLDGHG 70
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+ID GL +YF AP+SYTGE+V+EL GHGGP+++ MLL+ CL+ G IGLRLA PGEFT+
Sbjct: 71 KVIDHGLALYFPAPNSYTGEEVLELQGHGGPVVMQMLLTRCLQAGDGIGLRLAEPGEFTR 130
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EA+ DLI ASTE+AA+SA S+ G+FS I L+DK+I+LR L+E +
Sbjct: 131 RAFLNDKLDLAQAEAVADLIEASTEAAARSAARSMEGEFSNAIRQLVDKVIHLRMLVEAT 190
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + L ++D +L I+ +L ++ Q ++ AL+R GL+VVL GQPNVGKSSL
Sbjct: 191 LDFPEEEIDF-LEQSDARGQLATIRTELSGVLAQARQGALLREGLSVVLAGQPNVGKSSL 249
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G+++AIVT IAGTTRD++ +TIQI+ I DTAG+ + +EVE+IG
Sbjct: 250 LNALAGAELAIVTPIAGTTRDRVRETIQIDGIPLHIIDTAGL------REHAADEVERIG 303
Query: 301 IERTWVELKNSDIIIYVQDAR-YDKH----TD--FDKKIIKNFPMNIPVIYVWNKID--- 350
IERTW ++ +DI++++ DA Y +H TD D ++ P P++ + NKID
Sbjct: 304 IERTWDAIRRADIVLHLVDATDYLRHGLSETDDAIDDQLSGQLPPGSPIVRIVNKIDKAP 363
Query: 351 ------YSGHQKNINYKN--NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLAR 402
+ G++ ++ N N I++SA GI LLR LL L+ Q+ +LAR
Sbjct: 364 AVGDVVFGGNRPHVVAANGPNPTEIWISARTGAGIELLRRELLRLV-GWQSGNEGNFLAR 422
Query: 403 ERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLD 462
ERH+ +L A +L A + Q+E + L+L AE+LR + L+SI G+ T++DLL
Sbjct: 423 ERHLTALRNAQSHLDIAAE---QAEHQAQA-LDLFAEELRLAQDCLNSITGEFTSDDLLG 478
Query: 463 NIFSQFCIGK 472
IF++FCIGK
Sbjct: 479 TIFTRFCIGK 488
>gi|205422374|sp|Q0KFG6.2|MNME_CUPNH RecName: Full=tRNA modification GTPase MnmE
Length = 475
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 224/490 (45%), Positives = 318/490 (64%), Gaps = 33/490 (6%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M PI IAT PGRGG+G++R+SG ++ ++ VC + LKPR ATY F +
Sbjct: 1 MTAPQVPIAAIATAPGRGGIGVVRVSGPDVGPVMRSVCGQA---LKPRHATYLPFLDGHG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+ID GL +YF AP+SYTGE+V+EL GHGGP+++ MLL+ CL+ G IGLRLA PGEFT+
Sbjct: 58 KVIDHGLALYFPAPNSYTGEEVLELQGHGGPVVMQMLLTRCLQAGDGIGLRLAEPGEFTR 117
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EA+ DLI ASTE+AA+SA S+ G+FS I L+DK+I+LR L+E +
Sbjct: 118 RAFLNDKLDLAQAEAVADLIEASTEAAARSAARSMEGEFSNAIRQLVDKVIHLRMLVEAT 177
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + L ++D +L I+ +L ++ Q ++ AL+R GL+VVL GQPNVGKSSL
Sbjct: 178 LDFPEEEIDF-LEQSDARGQLATIRTELSGVLAQARQGALLREGLSVVLAGQPNVGKSSL 236
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G+++AIVT IAGTTRD++ +TIQI+ I DTAG+ + +EVE+IG
Sbjct: 237 LNALAGAELAIVTPIAGTTRDRVRETIQIDGIPLHIIDTAGL------REHAADEVERIG 290
Query: 301 IERTWVELKNSDIIIYVQDAR-YDKH----TD--FDKKIIKNFPMNIPVIYVWNKID--- 350
IERTW ++ +DI++++ DA Y +H TD D ++ P P++ + NKID
Sbjct: 291 IERTWDAIRRADIVLHLVDATDYLRHGLSETDDAIDDQLSGQLPPGSPIVRIVNKIDKAP 350
Query: 351 ------YSGHQKNINYKN--NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLAR 402
+ G++ ++ N N I++SA GI LLR LL L+ Q+ +LAR
Sbjct: 351 AVGDVVFGGNRPHVVAANGPNPTEIWISARTGAGIELLRRELLRLV-GWQSGNEGNFLAR 409
Query: 403 ERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLD 462
ERH+ +L A +L A + Q+E + L+L AE+LR + L+SI G+ T++DLL
Sbjct: 410 ERHLTALRNAQSHLDIAAE---QAEHQAQA-LDLFAEELRLAQDCLNSITGEFTSDDLLG 465
Query: 463 NIFSQFCIGK 472
IF++FCIGK
Sbjct: 466 TIFTRFCIGK 475
>gi|226942147|ref|YP_002797221.1| tRNA modification GTPase TrmE [Laribacter hongkongensis HLHK9]
gi|254811488|sp|C1D6H7.1|MNME_LARHH RecName: Full=tRNA modification GTPase MnmE
gi|226717074|gb|ACO76212.1| tRNA modification GTPase trmE [Laribacter hongkongensis HLHK9]
Length = 450
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 201/458 (43%), Positives = 288/458 (62%), Gaps = 22/458 (4%)
Query: 15 PGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAP 74
PGRGGVG+IRLSG+NL + + +Q +PR A Y+ F + ID GL++YF AP
Sbjct: 15 PGRGGVGVIRLSGRNLLPLAGQLSGG--RQPRPRHALYTDFVASDGQAIDSGLLLYFPAP 72
Query: 75 HSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVE 134
HS+TGEDV+EL GHGGP+IL MLL+ CLE+G RLA PGEFTKRAFLN+K+DL++ E
Sbjct: 73 HSFTGEDVLELQGHGGPVILRMLLARCLELGA----RLAEPGEFTKRAFLNDKMDLVEAE 128
Query: 135 AIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELILNK 194
++ DLI+A +E+AA+SA+ SL G FS I+ L+D LI+LR L E + DFPEE+ L K
Sbjct: 129 SVADLIDAQSETAARSALKSLKGAFSAEIHRLVDTLIDLRMLTEATLDFPEEDDVEWLEK 188
Query: 195 NDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTS 254
D L ++++L ++ ++ A++R G++VVL+GQPNVGKSSL N+L G ++AIVT
Sbjct: 189 ADALGRLAAVRRQLATVLATARQGAILREGMHVVLVGQPNVGKSSLMNALAGDEIAIVTD 248
Query: 255 IAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDII 314
IAGTTRD + + I ++ I DTAG +++ + VE+IGIERTW ++ +D++
Sbjct: 249 IAGTTRDTVREQIVLDGVPLHIIDTAG-------LRETTDTVERIGIERTWQAVERADVV 301
Query: 315 IYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKR 374
+ + D R D T D I+ P +P ++V NKID +G ++ ++ + LSA
Sbjct: 302 LLLVDGR-DGVTAADAAILARLPERLPRVFVHNKIDLTGETAGVSEEDGHVVVRLSARGG 360
Query: 375 IGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNL 434
G++ LR LL+ + Q +LARERH+ ++ A L A + +
Sbjct: 361 AGVDALRQVLLEAV-GWQGESEGLFLARERHLDAIRRAEAELEAA-------GQAYGLAA 412
Query: 435 ELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
EL AE LR LS I G+ + +DLL IFS+FCIGK
Sbjct: 413 ELFAEHLRQAQACLSEITGEFSADDLLGVIFSRFCIGK 450
>gi|34499858|ref|NP_904073.1| tRNA modification GTPase TrmE [Chromobacterium violaceum ATCC
12472]
gi|46577367|sp|Q7NPT9.1|MNME_CHRVO RecName: Full=tRNA modification GTPase MnmE
gi|34105708|gb|AAQ62062.1| thiophene and furan oxidation protein ThdF [Chromobacterium
violaceum ATCC 12472]
Length = 450
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 205/467 (43%), Positives = 305/467 (65%), Gaps = 24/467 (5%)
Query: 6 SPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDK 65
+ I +AT PGRGGVG+IR+SGK+L + + K KPR+ATY+ FF + +D
Sbjct: 8 ATICAVATAPGRGGVGVIRVSGKDLLPFAQAISGG--KTPKPRYATYTDFFDAHGQALDN 65
Query: 66 GLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLN 125
GL+++F P+S+TGEDVIEL GHGGP++L MLL+ C+E+G RLA PGEFTKRAFLN
Sbjct: 66 GLLLFFPGPNSFTGEDVIELQGHGGPVVLKMLLARCVELGA----RLAEPGEFTKRAFLN 121
Query: 126 NKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPE 185
+KLDL Q E++ DLI+AS+E+AA+SA+ SL G FS+ ++ L+D+LINLR L+E + DFPE
Sbjct: 122 DKLDLAQAESVADLIDASSETAARSALKSLKGAFSREVHGLVDELINLRMLVEATLDFPE 181
Query: 186 ENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLV 245
E + L + D L +++ +L+ + K+ A++R G++VVL+GQPNVGKSSL N+L
Sbjct: 182 EEIDF-LKQADAIGRLRRLRAQLVGVQATAKQGAILREGMHVVLVGQPNVGKSSLMNALA 240
Query: 246 GSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTW 305
G D+AIVT IAGTTRD + + I I+ I DTAG+ D + + VEKIGIERTW
Sbjct: 241 GDDIAIVTDIAGTTRDTVREEIVIDGVPVHIIDTAGLRDTD-------DVVEKIGIERTW 293
Query: 306 VELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIA 365
++ +D+ + + D+R + + I++ P +P + V+NK+D SG + ++
Sbjct: 294 QAVERADLALLLVDSREGLTAEV-QSILERLPPALPRVQVFNKVDLSGEAAGLAEQDGHP 352
Query: 366 NIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQ 425
+ LSA G+++L+ LL++I + E +LAR+RH+ ++ A +L A
Sbjct: 353 LVRLSARTHDGVDILKAKLLEMIGYSGADEGV-FLARQRHLDAIARAADHLELA------ 405
Query: 426 SEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
E ++E+ +E+ AE+LR LS I G+ + +DLL IFS+FCIGK
Sbjct: 406 -EADWEQ-VEIFAEELRMAQNALSEITGEFSADDLLGVIFSRFCIGK 450
>gi|422323373|ref|ZP_16404412.1| tRNA modification GTPase mnmE [Achromobacter xylosoxidans C54]
gi|317401615|gb|EFV82241.1| tRNA modification GTPase mnmE [Achromobacter xylosoxidans C54]
Length = 450
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 208/457 (45%), Positives = 294/457 (64%), Gaps = 21/457 (4%)
Query: 16 GRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPH 75
GRGG+G++R+SG +L E+V + +++L PR A Y F + ++D+G+ +YFK PH
Sbjct: 15 GRGGIGVVRVSGADL---SELVRRLFQRELTPRHAHYLPFKAVDGELLDEGIALYFKGPH 71
Query: 76 SYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVEA 135
SYTGEDV+EL GHGGP +L +L SCL G+ +GLRLA PGEFT+RAFLN+++DL Q EA
Sbjct: 72 SYTGEDVLELQGHGGPAVLRRVLDSCLAAGRDLGLRLAEPGEFTRRAFLNDRMDLAQAEA 131
Query: 136 IIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELILNKN 195
+ DLI AS+ +AA+ AM SLSG FS +N L D++I+LR L+E + DFPEE + L K
Sbjct: 132 VADLIEASSVAAARGAMASLSGDFSARVNDLSDRIIHLRMLVEATLDFPEEEIDF-LEKY 190
Query: 196 DFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSI 255
L K+ L +I Q ++ ++R GL+VVL GQPNVGKSSL N+L G DVAIVT I
Sbjct: 191 QARPTLEKLAGDLGHLIAQARQGVILREGLHVVLAGQPNVGKSSLLNALAGDDVAIVTPI 250
Query: 256 AGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIII 315
AGTTRDK+ + I I+ I DTAG +++ + VE IGI R+W E++ +D+I+
Sbjct: 251 AGTTRDKVVQQIHIDGVPLHIVDTAG-------LRETEDTVESIGIARSWQEIERADVIL 303
Query: 316 YVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKRI 375
++QDA + D +I P PV+ V+NK+D + + + +SA +
Sbjct: 304 HLQDA-TQPGDELDAQITARLPPRTPVLKVFNKVDL----LSTAFAAGPGELGISAKRGA 358
Query: 376 GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLE 435
G++ LR LL + E SP+LARERH+H+L +A +L+ A + Q ++ L+
Sbjct: 359 GLDALRAELLRIAGWNPGAE-SPWLARERHLHALQDAADHLALAAEHAEQD----DRVLD 413
Query: 436 LIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L AE+LR H+ LSSI GK T++DLL IFS FCIGK
Sbjct: 414 LFAEELRLAHDSLSSITGKFTSDDLLGEIFSSFCIGK 450
>gi|89902988|ref|YP_525459.1| tRNA modification GTPase TrmE [Rhodoferax ferrireducens T118]
gi|122478002|sp|Q21QM5.1|MNME_RHOFD RecName: Full=tRNA modification GTPase MnmE
gi|89347725|gb|ABD71928.1| tRNA modification GTPase trmE [Rhodoferax ferrireducens T118]
Length = 469
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 207/486 (42%), Positives = 306/486 (62%), Gaps = 41/486 (8%)
Query: 5 NSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIID 64
PI+ IAT PGRG VGI+R+SGK++ S+++ + + QL+ R ATY F ++ ID
Sbjct: 7 QDPIVAIATAPGRGAVGIVRVSGKSIGSLMQALLGR---QLRAREATYLPFLDRSQLAID 63
Query: 65 KGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIG----------KSIGLRLAM 114
+G+ +YF APHS+TGEDV+EL HGGP++L +LL+ CLE G + +GLR A+
Sbjct: 64 QGIALYFPAPHSFTGEDVLELQAHGGPVVLQLLLARCLEAGAELDPVSQMPRLVGLRPAL 123
Query: 115 PGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLR 174
PGEF++RAFLN+K+DL Q EAI DLI+ASTE+AA+SA SLSG FS+ I+IL + LI+LR
Sbjct: 124 PGEFSERAFLNDKIDLAQAEAIADLIDASTEAAARSASRSLSGAFSQEIHILREALIHLR 183
Query: 175 TLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPN 234
L+E + DFPEE + L + D +L +++ L ++Q+ + AL+R G+ VV+ GQPN
Sbjct: 184 MLVEATLDFPEEEIDF-LRQADARGQLSDLQQSLQSVLQKASQGALLREGITVVIAGQPN 242
Query: 235 VGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNIN 294
VGKSSL N+L G+++AIVT IAGTTRDK+ +TIQI + DTAG+ D + +
Sbjct: 243 VGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPVHVIDTAGLRDSD-------D 295
Query: 295 EVEKIGIERTWVELKNSDIIIYVQDARYDKHTDF-------DKKIIKNFPMNIPVIYVWN 347
+EKIGI RTW ++ +D ++++ D TD+ + I ++PVI +WN
Sbjct: 296 VIEKIGIARTWDVIEAADAVLFLHDLTRKNATDYIAADAVIAEAIAGKLSASVPVIEIWN 355
Query: 348 KIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIH 407
K D I+ A + LSA G++ LR LL+L+ Q+ Y+ARERH+
Sbjct: 356 KADV------IDRPCQQAGLQLSAKTGAGLDTLRRKLLELV-GWQSKPEGVYMARERHVQ 408
Query: 408 SLNE-ANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFS 466
+L+ A + ++ + +++ L+L+AE+LR L I G +++DLL IFS
Sbjct: 409 ALHRTAAHLMTAGFHLEAKAQA-----LDLLAEELRLAQNALGEITGDFSSDDLLGVIFS 463
Query: 467 QFCIGK 472
+FCIGK
Sbjct: 464 RFCIGK 469
>gi|76811890|ref|YP_331723.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1710b]
gi|254186626|ref|ZP_04893143.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei Pasteur
52237]
gi|254261025|ref|ZP_04952079.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1710a]
gi|123600728|sp|Q3JXI0.1|MNME_BURP1 RecName: Full=tRNA modification GTPase MnmE
gi|76581343|gb|ABA50818.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1710b]
gi|157934311|gb|EDO89981.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei Pasteur
52237]
gi|254219714|gb|EET09098.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1710a]
Length = 467
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 221/483 (45%), Positives = 311/483 (64%), Gaps = 28/483 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-----GKNLWSIVEIVCKKTKKQLKPRFATYSSF 55
+ T + PI+ IAT GRGG+G++RLS ++ + +C +L PR A+Y F
Sbjct: 2 LATDSDPIVAIATASGRGGIGVVRLSLGRAGEAAARALSDALCGA---RLMPRHASYVPF 58
Query: 56 FCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMP 115
+D+G+ +YF APHSYTGE VIEL GHGGPI+L +LL CL+ G++ GLRLA P
Sbjct: 59 LDGAGEPLDRGIALYFPAPHSYTGEHVIELQGHGGPIVLQLLLQRCLDAGRAHGLRLAEP 118
Query: 116 GEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRT 175
GEFT+RAFLN+KLDL Q EA+ DLI AS+E+AA+SA SL G FS+ I+ L+D +I LR
Sbjct: 119 GEFTRRAFLNDKLDLAQAEAVADLIEASSEAAARSAGRSLDGAFSRDIHALVDDVIALRM 178
Query: 176 LIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235
L+E + DFPEE + L D +L I+++L ++ ++ AL+R GL+VVL GQPNV
Sbjct: 179 LVEATLDFPEEEIDF-LEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNV 237
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKSSL N+L G+++AIVT IAGTTRDK+ +TIQI I DTAG +++ +E
Sbjct: 238 GKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHIIDTAG-------LRETEDE 290
Query: 296 VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355
VEKIGI RTW E++ +D+++++ DAR D+ I FP +PV+ V NK D +G
Sbjct: 291 VEKIGIARTWGEIERADVVLHLLDARSGLGPG-DEAIAARFPDGVPVVRVLNKTDLTGAP 349
Query: 356 KNIN------YKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSL 409
++ + ++ + LSA + GI+LLR LL I Q S YLARERH+ +L
Sbjct: 350 ASVTRTGGGAARADVCEVRLSAKRGDGIDLLRGELLR-IAGWQAGAESVYLARERHLIAL 408
Query: 410 NEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFC 469
A +L+ A + +E+N + L+L AE+LR E+L+SI G+ T++DLL IFS+FC
Sbjct: 409 RAAQAHLARAAE---HAEQNAQA-LDLFAEELRLAQERLNSITGEFTSDDLLGVIFSRFC 464
Query: 470 IGK 472
IGK
Sbjct: 465 IGK 467
>gi|351731842|ref|ZP_08949533.1| tRNA modification GTPase TrmE [Acidovorax radicis N35]
Length = 475
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 214/492 (43%), Positives = 294/492 (59%), Gaps = 37/492 (7%)
Query: 1 MLTKNS-PIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKN 59
ML ++ PI+ IAT PGRG VGI+R+SG+ + +V+ +C + LKPR ATY F
Sbjct: 1 MLARHQDPIVAIATAPGRGAVGIVRVSGRAIGGLVQALCGRA---LKPREATYLPFRDAQ 57
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSI----------G 109
ID+GL +YF PHSYTGEDV+EL HGGP++L +LL+ CLE G + G
Sbjct: 58 GQAIDQGLALYFPGPHSYTGEDVLELQAHGGPVVLQLLLARCLEAGATADPATGQPCLPG 117
Query: 110 LRLAMPGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDK 169
LRLA PGEFT+RAFLN+K+DL Q EAI DLI+ASTE+AA+SA SL+G FS I+ L D
Sbjct: 118 LRLAQPGEFTERAFLNDKIDLAQAEAIADLIDASTEAAARSASRSLTGAFSAEIHSLRDA 177
Query: 170 LINLRTLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVL 229
LI+LR L+E + DFPEE + L K D +L K+++ L ++Q+ ++ AL+R G+ VV+
Sbjct: 178 LIHLRMLVEATLDFPEEEIDF-LRKADAHGQLSKLQQTLASVMQRARQGALLREGIKVVI 236
Query: 230 IGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKI 289
GQPN GKSSL N+L G+++AIVT IAGTTRDK+ +TIQI I DTAG+ D
Sbjct: 237 AGQPNAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHIIDTAGLRD----- 291
Query: 290 KKNINEVEKIGIERTWVELKNSDIIIYVQD-ARYDK------HTDFDKKIIKNFPMNIPV 342
+ +EVE+IGI R W E+ +D ++++ D R D + + P +IPV
Sbjct: 292 --SSDEVERIGIARAWDEIAGADAVLFLHDLERVDAPEYIAGDASIASAMAQKMPKSIPV 349
Query: 343 IYVWNKIDYSGHQKNINYK-NNIANIYLSASKRIG-INLLRNTLLDLIEKTQTIESSPYL 400
I VWNK+D + + LSA R G LL + Q+ Y+
Sbjct: 350 IDVWNKLDRAPAGAPAPAAVETRPGVRLSA--RTGEGLDGLRRLLLQVAGWQSAPEGLYI 407
Query: 401 ARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDL 460
AR RH+ +L +L A + L+L+AE+LR LS+I G+ +++DL
Sbjct: 408 ARARHVEALQAVGAHLQEAADQLQAQ----GPALDLLAEELRLAQNALSAITGEFSSDDL 463
Query: 461 LDNIFSQFCIGK 472
L IFS FCIGK
Sbjct: 464 LGVIFSSFCIGK 475
>gi|300705596|ref|YP_003747199.1| GTPase [Ralstonia solanacearum CFBP2957]
gi|299073260|emb|CBJ44619.1| GTPase involved in tRNA modification and in thiophene and furan
oxidation [Ralstonia solanacearum CFBP2957]
Length = 434
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 202/448 (45%), Positives = 288/448 (64%), Gaps = 23/448 (5%)
Query: 32 SIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGP 91
++++ VC + L+PR ATY F + + ID+G+ ++F APHSYTGEDV+EL GHGGP
Sbjct: 3 AVMQAVCGRL---LQPRQATYLPFLDADGHAIDRGIALWFPAPHSYTGEDVLELQGHGGP 59
Query: 92 IILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSA 151
+++ +LLS CL+ G+ IG+R+A PGEFT+RAFLN+K+DL Q EA+ DLI ASTE+AA+SA
Sbjct: 60 VVMQLLLSRCLQTGREIGVRVAEPGEFTRRAFLNDKMDLAQAEAVADLIEASTEAAARSA 119
Query: 152 MISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKI 211
SL G FS+ ++ L++++I+LR L+E + DFPEE + L D +L I+ +L +
Sbjct: 120 ARSLDGAFSQAVHALVERVIHLRMLVEATLDFPEEEIDF-LEAADARGQLADIRARLDGV 178
Query: 212 IQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK 271
+ Q ++ AL+R GL+VVL GQPNVGKSSL N+L G+++AIVT IAGTTRDK+ +TIQI
Sbjct: 179 LAQARQGALLREGLHVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEG 238
Query: 272 FLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDAR-------YDK 324
I DTAG+ D +EVE+IGIERTW + +D+++++ DA +
Sbjct: 239 IPLNIVDTAGLRDTE-------DEVERIGIERTWAAIARADVVLHLLDAADYRALGLSAE 291
Query: 325 HTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTL 384
D +I + P +P + V NKID SG + ++LSA GI LLR L
Sbjct: 292 DAAIDARIAGHVPAGVPTLRVINKIDLSGAATPVRVDAQPPEVWLSARDGSGIELLRAAL 351
Query: 385 LDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFC 444
L+ I Q YLARERH+ +L A +L+ A +Q ++L+L AE+LR
Sbjct: 352 LE-IAGWQGGGEGLYLARERHLSALRAAKDHLAIAADHADQR----AQSLDLFAEELRLA 406
Query: 445 HEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
E L+SI G +++DLL IFS+FCIGK
Sbjct: 407 QEALNSITGAFSSDDLLGVIFSRFCIGK 434
>gi|388566795|ref|ZP_10153237.1| tRNA modification GTPase MnmE [Hydrogenophaga sp. PBC]
gi|388265973|gb|EIK91521.1| tRNA modification GTPase MnmE [Hydrogenophaga sp. PBC]
Length = 459
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 213/478 (44%), Positives = 299/478 (62%), Gaps = 25/478 (5%)
Query: 1 MLTKNS-PIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKN 59
ML ++ PI IAT PGRGGVGI+R+SGK L V + + +LKPR ATY + +
Sbjct: 1 MLPHHADPIAAIATAPGRGGVGIVRVSGKGLAPFVRALLGR---ELKPREATYGPWRGAD 57
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSI--GLRLAMPGE 117
ID GL ++F APHSYTGEDV+EL GHGGP++L +LL+ CLE+ ++ GLRLA GE
Sbjct: 58 GQPIDHGLSLWFPAPHSYTGEDVLELQGHGGPVVLQLLLARCLEVARATLPGLRLARAGE 117
Query: 118 FTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLI 177
FT+RAFLN+KLDL Q EA+ DLI+ASTE+AA+SA SL G FS+ ++ L + L NLR L+
Sbjct: 118 FTERAFLNDKLDLAQAEAVADLIDASTEAAARSAARSLDGAFSRRVHTLQEALTNLRMLV 177
Query: 178 EFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGK 237
E + DFPEE + L K D +L ++++ L + + ++ AL+R+GL VV+ GQPN GK
Sbjct: 178 EATLDFPEEEIDF-LQKADAQGQLDRLREALSVLRAEARQGALLRDGLQVVIAGQPNAGK 236
Query: 238 SSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVE 297
SSL N+L G+++AIVT IAGTTRD + +TIQI +TDTAG+ D I+EVE
Sbjct: 237 SSLLNALAGAELAIVTPIAGTTRDVVQQTIQIEGVPLHVTDTAGLRD-----SPEIDEVE 291
Query: 298 KIGIERTWVELKNSDIIIYVQD-ARYD--KHTDFDKKIIKNFPMNIPVIYVWNKIDYSGH 354
+IGIER W ++ +D ++++ D R+ ++ D I + P +PV++VWNK+D +
Sbjct: 292 RIGIERAWQRIRGADAVLFLHDLTRWGEPRYRYADANIARGLPAGVPVLHVWNKLDQAD- 350
Query: 355 QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+I LSA G++ LR LL L Q ++ARERH+ L +
Sbjct: 351 ----AAPQGADDIALSAKHGTGLDALRQRLLQLA-GWQPGGDGLFMARERHLQVLARVDE 405
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L A + L+L+AE+LR + L I G+ T +DLL IFS+FCIGK
Sbjct: 406 HLELAAA----RLREAAAQLDLLAEELRLAQQALGEITGEFTADDLLGVIFSRFCIGK 459
>gi|332531204|ref|ZP_08407117.1| tRNA modification GTPase TrmE [Hylemonella gracilis ATCC 19624]
gi|332039311|gb|EGI75724.1| tRNA modification GTPase TrmE [Hylemonella gracilis ATCC 19624]
Length = 452
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 206/479 (43%), Positives = 300/479 (62%), Gaps = 34/479 (7%)
Query: 1 MLTKN-SPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKN 59
ML ++ PI+ IAT PGRG VGI+R SG++L ++V VC K L PR ATY
Sbjct: 1 MLARHHEPIVAIATAPGRGAVGIVRASGRDLTTLVHAVCGKA---LMPRHATYLPLRDAR 57
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFT 119
ID GL I+F APHSYTGE+V+EL HGGP++L +LL+ CLE G R+A+PGEFT
Sbjct: 58 GEAIDHGLAIHFPAPHSYTGEEVLELQVHGGPVVLQLLLARCLE--ALPGSRIALPGEFT 115
Query: 120 KRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEF 179
+RAFLN KLDL Q EA+ DLI+ASTE+AA+SA SL G FS+ I L + L++LR L+E
Sbjct: 116 QRAFLNGKLDLAQAEAVADLIDASTEAAARSAGRSLEGAFSREIAQLREALVHLRMLVEA 175
Query: 180 SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
+ DFPEE+ + L + D +L +++ +L I++Q ++ +L+R G+ VV+ GQPN GKSS
Sbjct: 176 TLDFPEEDIDF-LRQADAQGQLSRLQVQLQVILRQAQQGSLLREGIKVVIAGQPNAGKSS 234
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N+L G+++AIVT IAGTTRD + +TIQI + DTAG ++++ +EVE+I
Sbjct: 235 LLNALAGAELAIVTPIAGTTRDVVQQTIQIEGVPLHVVDTAG-------LRESQDEVERI 287
Query: 300 GIERTWVELKNSDIIIYVQDARYDKHTDF---DKKIIKNFPMNIPVIYVWNKIDYSGHQK 356
GIER W ++ ++D ++++ D D+ D+ + + P ++PVI++WNK D +
Sbjct: 288 GIERAWAQIASADAVLFLHDLTRQIQADYLASDEALAQRLPSDVPVIHIWNKHDQA---- 343
Query: 357 NINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP---YLARERHIHSLNEAN 413
N I LSA G++LLR LL +T +S+P +LARERH+ +L +
Sbjct: 344 --PEAVNRPGISLSAKTGAGLDLLRQALL----RTVGWQSAPEGLFLARERHVQALRSVS 397
Query: 414 YYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L A +++ + E + R L+ I G+ T++DLL IFS+FCIGK
Sbjct: 398 RHLQAAECHLDEKALALDLLAEEL----RLAQNALNEITGEFTSDDLLGVIFSRFCIGK 452
>gi|319765051|ref|YP_004128988.1| tRNA modification gtpase trme [Alicycliphilus denitrificans BC]
gi|317119612|gb|ADV02101.1| tRNA modification GTPase TrmE [Alicycliphilus denitrificans BC]
Length = 465
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 212/482 (43%), Positives = 301/482 (62%), Gaps = 27/482 (5%)
Query: 1 MLTKNS-PIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKN 59
ML ++ PI IAT PGRG VGI+R+SG+ L V+ + ++ L+PR A Y F
Sbjct: 1 MLARHQDPIAAIATAPGRGAVGIVRVSGRGLAPFVQGLLGRS---LQPRQAHYLPFPDAA 57
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSI--GLRLAMPGE 117
ID+GL ++F APHSYTGEDV+EL HGGP++L +LL+ CLE +++ LRLA PGE
Sbjct: 58 GRSIDQGLALFFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAQAVLPRLRLAEPGE 117
Query: 118 FTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLI 177
FT+RAFLN+KLDL Q EAI DLI+ASTE+AA+SA SLSG FS+ I+ L D L++LR L+
Sbjct: 118 FTERAFLNDKLDLAQAEAIADLIDASTEAAARSAGRSLSGAFSQEIHGLRDALVHLRMLV 177
Query: 178 EFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGK 237
E + DFPEE + L K D +L +++ L ++Q+ + AL+R G+ VV+ GQPN GK
Sbjct: 178 EATLDFPEEEIDF-LRKADARGQLSNLQQTLAAVMQRASQGALLREGIKVVIAGQPNAGK 236
Query: 238 SSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVE 297
SSL N+L G+++AIVT IAGTTRDK+ +TIQI I DTAG ++++ +EVE
Sbjct: 237 SSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHIIDTAG-------LRESADEVE 289
Query: 298 KIGIERTWVELKNSDIIIYVQD-ARYD--KHTDFDKKI----IKNFPMNIPVIYVWNKID 350
+IGI R W E+ +D ++++ D R D ++ D I ++ ++PVI VWNK D
Sbjct: 290 RIGIARAWDEITQADAVLFLHDLTRLDAPEYIAADALIASTLVQKLSESVPVIDVWNKTD 349
Query: 351 YSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLN 410
+ + A + LSA G++ LR LL + Q+ Y+AR RHI +L
Sbjct: 350 AA-ARPAPAATAGRAAVQLSARTGQGLDALRRELLR-VAGWQSAAEGVYIARARHIEALR 407
Query: 411 EANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCI 470
+ +L A + + L+L+AE+LR L++I G+ T++DLL IFS FCI
Sbjct: 408 AVDAHLMEAAAQLEST----GPALDLLAEELRLAQSALNAITGEFTSDDLLGVIFSSFCI 463
Query: 471 GK 472
GK
Sbjct: 464 GK 465
>gi|330827243|ref|YP_004390546.1| tRNA modification GTPase mnmE [Alicycliphilus denitrificans K601]
gi|329312615|gb|AEB87030.1| tRNA modification GTPase mnmE [Alicycliphilus denitrificans K601]
Length = 465
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 212/482 (43%), Positives = 301/482 (62%), Gaps = 27/482 (5%)
Query: 1 MLTKNS-PIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKN 59
ML ++ PI IAT PGRG VGI+R+SG+ L V+ + ++ L+PR A Y F
Sbjct: 1 MLARHQDPIAAIATAPGRGAVGIVRVSGRGLAPFVQGLLGRS---LQPRQAHYLPFPDAA 57
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSI--GLRLAMPGE 117
ID+GL ++F APHSYTGEDV+EL HGGP++L +LL+ CLE +++ LRLA PGE
Sbjct: 58 GRSIDQGLALFFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAQAVLPRLRLAEPGE 117
Query: 118 FTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLI 177
FT+RAFLN+KLDL Q EAI DLI+ASTE+AA+SA SLSG FS+ I+ L D L++LR L+
Sbjct: 118 FTERAFLNDKLDLAQAEAIADLIDASTEAAARSAGRSLSGAFSQEIHGLRDALVHLRMLV 177
Query: 178 EFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGK 237
E + DFPEE + L K D +L +++ L ++Q+ + AL+R G+ VV+ GQPN GK
Sbjct: 178 EATLDFPEEEIDF-LRKADARGQLSNLQQTLAAVMQRASQGALLREGIKVVIAGQPNAGK 236
Query: 238 SSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVE 297
SSL N+L G+++AIVT IAGTTRDK+ +TIQI I DTAG ++++ +EVE
Sbjct: 237 SSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHIIDTAG-------LRESADEVE 289
Query: 298 KIGIERTWVELKNSDIIIYVQD-ARYD--KHTDFDKKI----IKNFPMNIPVIYVWNKID 350
+IGI R W E+ +D ++++ D R D ++ D I ++ ++PVI VWNK D
Sbjct: 290 RIGIARAWDEITQADAVLFLHDLTRLDAPEYIAADALIASTLVQKLSESVPVIDVWNKTD 349
Query: 351 YSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLN 410
+ + A + LSA G++ LR LL + Q+ Y+AR RHI +L
Sbjct: 350 AA-ARPAPAATAGRAAVQLSARTGQGLDALRRELLR-VAGWQSAAEGVYIARARHIEALR 407
Query: 411 EANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCI 470
+ +L A + + L+L+AE+LR L++I G+ T++DLL IFS FCI
Sbjct: 408 AVDAHLMEAAAQLEST----GPALDLLAEELRLAQNALNAITGEFTSDDLLGVIFSSFCI 463
Query: 471 GK 472
GK
Sbjct: 464 GK 465
>gi|406976904|gb|EKD99205.1| hypothetical protein ACD_23C00080G0002 [uncultured bacterium]
Length = 468
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 203/485 (41%), Positives = 298/485 (61%), Gaps = 40/485 (8%)
Query: 5 NSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIID 64
+ PI+ IAT PGR VG++R+SG+ L +V +C + LKPR ATY++F ID
Sbjct: 7 SDPIVAIATAPGRAAVGMVRVSGRGLQQLVLALCGRP---LKPREATYTAFLDATGQPID 63
Query: 65 KGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIG---------LRLAMP 115
GL +YF APHS+TGE+V+EL HGGP++L +LL+ CL+ G LR+A+P
Sbjct: 64 HGLALYFVAPHSFTGEEVLELQAHGGPVVLQLLLARCLQAAAEPGANGSSRLAHLRVALP 123
Query: 116 GEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRT 175
GEF++RAFLN+K+DL Q EAI DLI+ASTE+AA+SA SL+G FS+ I+ L D LI+LR
Sbjct: 124 GEFSERAFLNDKIDLAQAEAIADLIDASTEAAARSASRSLAGAFSQEIHQLRDALIHLRM 183
Query: 176 LIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235
L+E + DFPEE + L K D +L +++ L K+ + ++ +L+R G+ VV+ GQPN
Sbjct: 184 LVEATLDFPEEEIDF-LQKADAQGQLSRLELSLAKVQARAQQGSLLREGIKVVIAGQPNA 242
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKSSL N+L G+++AIVT+I GTTRDK+ +TIQI + DTAG ++++ +E
Sbjct: 243 GKSSLLNALAGAELAIVTAIPGTTRDKVQQTIQIEGVPVHVIDTAG-------LRESEDE 295
Query: 296 VEKIGIERTWVELKNSDIIIYVQD-ARYDK------HTDFDKKIIKNFPMNIPVIYVWNK 348
VEKIGIE W + +D ++++ D R D+ I K P +PVI VWNK
Sbjct: 296 VEKIGIEHAWEAIAQADAVLFLHDLTRIDQAAYRADDAAIAHTIAKKVPRQVPVIEVWNK 355
Query: 349 IDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHS 408
+ + ++LSA +G++ LR+ LL + Q+ ++ARERH+ +
Sbjct: 356 L------DAAAAADLPEGLHLSAKTGLGLDALRHQLLQ-VAGWQSGSEGVFMARERHVQA 408
Query: 409 LNEANYYLSCA-IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQ 467
L+ +L A + + Q++ L+L+AE+LR L I G+ T++DLL IFS
Sbjct: 409 LHLTQNHLQAAQMHLTAQAQA-----LDLLAEELRLAQNALGEITGEFTSDDLLGVIFSS 463
Query: 468 FCIGK 472
FCIGK
Sbjct: 464 FCIGK 468
>gi|239818256|ref|YP_002947166.1| tRNA modification GTPase TrmE [Variovorax paradoxus S110]
gi|239804833|gb|ACS21900.1| tRNA modification GTPase TrmE [Variovorax paradoxus S110]
Length = 471
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 203/490 (41%), Positives = 298/490 (60%), Gaps = 37/490 (7%)
Query: 1 MLTKNS-PIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKN 59
ML + + PI+ IAT GRG VGI+R+SG L +V+ +C + LKPR ATY F
Sbjct: 1 MLARTTDPIVAIATASGRGAVGIVRVSGARLAPLVDALCGRP---LKPREATYLPFRDAA 57
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSI----------G 109
+D GL I+F +PHS+TGEDV+EL HGG ++L +LL+ CLE G
Sbjct: 58 GEPVDHGLAIHFPSPHSFTGEDVLELQAHGGTVVLQLLLARCLEAAAEADPVTGRPRLPG 117
Query: 110 LRLAMPGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDK 169
LR+A PGEF++RAFLN K+DL Q EAI DLI+ASTE+AA+SA SLSG FS+ I+ L D
Sbjct: 118 LRVAEPGEFSQRAFLNGKIDLAQAEAIADLIDASTEAAARSAGRSLSGAFSREIHALRDA 177
Query: 170 LINLRTLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVL 229
LI+LR L+E + DFPEE + L K D +L K++ +L + Q+ K+ AL+R G+ VV+
Sbjct: 178 LIHLRMLVEATLDFPEEEIDF-LQKADATGQLAKLQAQLAAVQQRAKQGALLREGIKVVI 236
Query: 230 IGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKI 289
GQPN GKSSL N+L G+++AIV+++AGTTRD +++TIQI+ + DTAG +
Sbjct: 237 AGQPNAGKSSLLNALAGAELAIVSAVAGTTRDVVSETIQIHGVPLHVVDTAG-------L 289
Query: 290 KKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDF---DKKIIK----NFPMNIPV 342
+++ +EVE+IG+ R W +++ +D ++++ D ++ D +I++ P ++PV
Sbjct: 290 RESSDEVEQIGVARAWGQIEGADAVLFLHDLTRTGQPEYAAADAEILRVLQHKLPASVPV 349
Query: 343 IYVWNKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLAR 402
+ VWNK D + + IA LSA +GI LR LL + Q + YLAR
Sbjct: 350 LDVWNKQDAAPMPETAGAAQGIA---LSAKTGLGIEALREQLLAMA-GWQAVPEGVYLAR 405
Query: 403 ERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLD 462
RH+ +L + + + + + L+L+AE+LR L+ I G+ +DLL
Sbjct: 406 ARHVQALGQ----VETHLALAASHLAAQAQLLDLLAEELRLAQNALNEITGEFGADDLLG 461
Query: 463 NIFSQFCIGK 472
IFS+FCIGK
Sbjct: 462 VIFSRFCIGK 471
>gi|241767064|ref|ZP_04764843.1| tRNA modification GTPase TrmE [Acidovorax delafieldii 2AN]
gi|241362387|gb|EER58354.1| tRNA modification GTPase TrmE [Acidovorax delafieldii 2AN]
Length = 473
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 214/490 (43%), Positives = 301/490 (61%), Gaps = 35/490 (7%)
Query: 1 MLTKNS-PIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKN 59
ML ++ PI+ IAT PGRG VGI+R+SGK L ++V +C + LKPR ATY F
Sbjct: 1 MLARHQDPIVAIATAPGRGAVGIVRVSGKGLTALVWALCGRA---LKPREATYLPFRDAR 57
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLE--------IGKSI--G 109
ID+GL +YF PHSYTGEDV+EL HGGP++L +LL+ CLE G+ G
Sbjct: 58 GEAIDQGLALYFPGPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAAAPDAATGQPCLAG 117
Query: 110 LRLAMPGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDK 169
LR+A PGEFT+RAFLN+K+DL Q EAI DLI+AST +AA+SA SL+G FS I+ L D
Sbjct: 118 LRVAQPGEFTERAFLNDKIDLAQAEAIADLIDASTAAAARSASRSLTGAFSAEIHGLRDA 177
Query: 170 LINLRTLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVL 229
LI+LR L+E + DFPEE + L K D +L ++ L K++Q+ ++ AL+R G+ VV+
Sbjct: 178 LIHLRMLVEATLDFPEEEIDF-LRKADARGQLSNLEHTLAKVMQRAQQGALLREGIKVVI 236
Query: 230 IGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKI 289
GQPN GKSSL N+L G+++AIVT IAGTTRDK+ +TIQI + DTAG+ D
Sbjct: 237 AGQPNAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRD----- 291
Query: 290 KKNINEVEKIGIERTWVELKNSDIIIYVQD-ARYD------KHTDFDKKIIKNFPMNIPV 342
+++EVE+IGI R W E+ +D ++++ D AR+D + + P +PV
Sbjct: 292 --SVDEVERIGIARAWDEIAAADAVLFLHDLARWDCADYRAADAAIEGALADKLPTTVPV 349
Query: 343 IYVWNKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLAR 402
I VWNK+D S + ++ LSA G+ LR+ LL + Q+ Y+AR
Sbjct: 350 IDVWNKVD-SVSAATVPGAPQRPSVALSARTGQGLEALRSVLLQ-VAGWQSAPEGVYIAR 407
Query: 403 ERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLD 462
RH+ +L +L+ A ++ L+L+AE+LR L++I G+ +++DLL
Sbjct: 408 ARHVQALQAVQAHLAEAAAQLDAR----GPALDLLAEELRLAQNALNAITGEFSSDDLLG 463
Query: 463 NIFSQFCIGK 472
IFS FCIGK
Sbjct: 464 VIFSSFCIGK 473
>gi|260221780|emb|CBA30686.1| tRNA modification GTPase mnmE [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 469
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 213/491 (43%), Positives = 302/491 (61%), Gaps = 41/491 (8%)
Query: 1 MLTKNS-PIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKN 59
ML+++S PI IAT GRG VGI+RLSGK+L + + + K L+PR ATY F +
Sbjct: 1 MLSRHSDPIAAIATASGRGAVGIVRLSGKSLGAFTQALLGKA---LRPREATYLPFPDEK 57
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSI----------- 108
ID GL ++F PHS+TGEDV+EL HGGP++L +L++ CL + S+
Sbjct: 58 GQPIDHGLALFFPGPHSFTGEDVLELQAHGGPVVLQLLVARCLALANSVQTEGVSSVLLP 117
Query: 109 GLRLAMPGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLD 168
GLR+A GEFT+RAFLNNKLDL Q EAI DLI+ASTE+AA+SA SLSG FSK I IL D
Sbjct: 118 GLRIAEAGEFTQRAFLNNKLDLAQAEAIADLIDASTEAAARSASQSLSGAFSKEIGILRD 177
Query: 169 KLINLRTLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVV 228
LI+LR L+E + DFPEE + L K D +L ++++ L +++ + + AL+R GL VV
Sbjct: 178 ALIHLRMLVEATLDFPEEEIDF-LQKADAVGQLQRLQQALQQVLAKATQGALLREGLKVV 236
Query: 229 LIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSK 288
+ GQPN GKSSL N+L G+++AIVT IAGTTRDK+ +TIQI I DTAG
Sbjct: 237 IAGQPNAGKSSLLNALAGAELAIVTPIAGTTRDKVQETIQIEGVPLHIIDTAG------- 289
Query: 289 IKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDF-------DKKIIKNFPMNIP 341
++ + + VEKIGIER W ++ +D ++++ D ++ I + P +IP
Sbjct: 290 LRASDDAVEKIGIERAWQAIEAADAVLFLHDLTRSSAIEYIAADADIAGAIAEKLPASIP 349
Query: 342 VIYVWNKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLA 401
VI+VWNK D + + + I+LSA +G++ LR LL Q +S ++A
Sbjct: 350 VIHVWNKSDAA------TPETGLEGIFLSAKTGVGLDALRQNLLT-AAGWQPAQSGAFMA 402
Query: 402 RERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLL 461
R+RH+ +L+ +L A +++ L+L+AE+LR L+SI G+ +DLL
Sbjct: 403 RQRHVQALHLVGQHLDMASELLASG----SAALDLLAEELRLGQNALNSITGEFGADDLL 458
Query: 462 DNIFSQFCIGK 472
IFS+FCIGK
Sbjct: 459 GVIFSKFCIGK 469
>gi|124269008|ref|YP_001023012.1| tRNA modification GTPase TrmE [Methylibium petroleiphilum PM1]
gi|124261783|gb|ABM96777.1| putative thiophene and furan oxidation protein [Methylibium
petroleiphilum PM1]
Length = 480
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 204/481 (42%), Positives = 294/481 (61%), Gaps = 29/481 (6%)
Query: 5 NSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIID 64
+ PI+ IAT PGRG VGI+R+SG+ L +++E VC + L+PR A Y F ID
Sbjct: 16 HDPIVAIATAPGRGAVGIVRVSGRGLGALIEAVCGRA---LQPRHAHYGPFLDAQGEAID 72
Query: 65 KGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSI----------GLRLAM 114
+GL ++F APHSYTGE+V+EL HGGP++L +LL+ CLE GLR+A
Sbjct: 73 QGLALHFPAPHSYTGEEVLELQAHGGPVLLQLLLARCLEAAAQPDARSGLPRLRGLRVAE 132
Query: 115 PGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLR 174
PGEFT+RAFLN+KLDL Q EA+ DLI+ASTE+AA+SA +L+G FS+ ++ L D+LI LR
Sbjct: 133 PGEFTERAFLNDKLDLAQAEAVADLIDASTEAAARSAGRALAGAFSQQVDTLRDRLIELR 192
Query: 175 TLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPN 234
L+E + DFPEE + L K D L +I + L ++ + K+ AL+R GL VVL GQPN
Sbjct: 193 MLVEATLDFPEEEIDF-LEKADARGRLARIAEALDAVLARAKQGALLREGLRVVLAGQPN 251
Query: 235 VGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNIN 294
VGKSSL N+L G+++AIVT IAGTTRDK+ +TIQI + DTAG+ +
Sbjct: 252 VGKSSLLNALAGAELAIVTPIAGTTRDKVAETIQIEGVPLHVVDTAGL----RAEDDARD 307
Query: 295 EVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFD---KKIIKNFPMNIPVIYVWNKIDY 351
EVE+IG++R+W + +D +I++ D +D + I + P + V+ V NK D
Sbjct: 308 EVERIGMQRSWGAIGEADAVIFLHDLTRAGDPGYDAAERDIEQRLPAGVHVLDVHNKADA 367
Query: 352 SGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNE 411
+ + LSA G++ LR LL L Q ++AR RH+ +L
Sbjct: 368 A---AAGAAALAPQALRLSARTGEGLDTLRRRLLQLA-GWQAGSEGVFIARTRHLQALQA 423
Query: 412 ANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIG 471
+L A ++ +++ + L+L+AE+LR H+ L +I G+ T ++LL +IFS+FCIG
Sbjct: 424 TAEHLVRARQLADRA----DAALDLLAEELRLAHDALGAITGRYTPDELLGDIFSRFCIG 479
Query: 472 K 472
K
Sbjct: 480 K 480
>gi|114332120|ref|YP_748342.1| tRNA modification GTPase TrmE [Nitrosomonas eutropha C91]
gi|114309134|gb|ABI60377.1| tRNA modification GTPase trmE [Nitrosomonas eutropha C91]
Length = 459
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 204/473 (43%), Positives = 291/473 (61%), Gaps = 22/473 (4%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
++ N I IATPPGRGG+GI+R+SG NL + + + K PR A +F +NN
Sbjct: 8 LVKNNDTIAAIATPPGRGGIGIVRISGTNLEQLAQTILGKLPD---PRHAGLFNFLDQNN 64
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+ID+G+V+YF +P+SYTGEDV+ELHGHGGP ++++LL+ CL++G RLA PGEFT
Sbjct: 65 QVIDQGIVLYFPSPNSYTGEDVLELHGHGGPAVMNLLLTRCLQLGA----RLAEPGEFTL 120
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN KLDL Q E + DLI AST +AA+ A+ SL G+FS I+ L+ LI+LR L+E +
Sbjct: 121 RAFLNEKLDLAQAEGVADLIEASTANAARCAVRSLHGEFSSAIHQLVSALIDLRVLVEAT 180
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + L +L I+ KL +++ ++ L++ G+ VVL GQPNVGKSSL
Sbjct: 181 LDFPEEEIDF-LQSAHAVEQLASIQTKLEQVLSASRRGNLLQEGIKVVLTGQPNVGKSSL 239
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N L G ++AIVT I GTTRD I ++I+I + DTAG +++ + VE+ G
Sbjct: 240 LNRLAGDEIAIVTEIPGTTRDTIRQSIEIEGIPLHLIDTAG-------LRETSDIVEQHG 292
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
I R + ++ +D+++ + D RY T D ++ P +PV+ V NKID SG I
Sbjct: 293 IARAYAAIEQADLVLLLVDGRYGV-TKEDHSVLARLPKELPVLTVHNKIDLSGQLSRIEE 351
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIE-KTQTIESSPYLARERHIHSLNEANYYLSCA 419
+ IYLS GI LLR LL + +T Y+AR+RH+ +L A L A
Sbjct: 352 DTSGTAIYLSVKSGEGIELLRTVLLKTVGWQTNIAGEGAYMARQRHLQALLHAKELLKRA 411
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ +++ LE++AE+LR + LSSI G+ T++DLL IFS FCIGK
Sbjct: 412 ETWLHTADQ-----LEILAEELRLAQQALSSITGEFTSDDLLGEIFSNFCIGK 459
>gi|205422403|sp|A2SMI8.2|MNME_METPP RecName: Full=tRNA modification GTPase MnmE
Length = 471
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 204/482 (42%), Positives = 297/482 (61%), Gaps = 31/482 (6%)
Query: 5 NSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIID 64
+ PI+ IAT PGRG VGI+R+SG+ L +++E VC + L+PR A Y F ID
Sbjct: 7 HDPIVAIATAPGRGAVGIVRVSGRGLGALIEAVCGRA---LQPRHAHYGPFLDAQGEAID 63
Query: 65 KGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSI----------GLRLAM 114
+GL ++F APHSYTGE+V+EL HGGP++L +LL+ CLE GLR+A
Sbjct: 64 QGLALHFPAPHSYTGEEVLELQAHGGPVLLQLLLARCLEAAAQPDARSGLPRLRGLRVAE 123
Query: 115 PGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLR 174
PGEFT+RAFLN+KLDL Q EA+ DLI+ASTE+AA+SA +L+G FS+ ++ L D+LI LR
Sbjct: 124 PGEFTERAFLNDKLDLAQAEAVADLIDASTEAAARSAGRALAGAFSQQVDTLRDRLIELR 183
Query: 175 TLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPN 234
L+E + DFPEE + L K D L +I + L ++ + K+ AL+R GL VVL GQPN
Sbjct: 184 MLVEATLDFPEEEIDF-LEKADARGRLARIAEALDAVLARAKQGALLREGLRVVLAGQPN 242
Query: 235 VGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNI- 293
VGKSSL N+L G+++AIVT IAGTTRDK+ +TIQI + DTAG+ + + +
Sbjct: 243 VGKSSLLNALAGAELAIVTPIAGTTRDKVAETIQIEGVPLHVVDTAGL-----RAEDDAR 297
Query: 294 NEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFD---KKIIKNFPMNIPVIYVWNKID 350
+EVE+IG++R+W + +D +I++ D +D + I + P + V+ V NK D
Sbjct: 298 DEVERIGMQRSWGAIGEADAVIFLHDLTRAGDPGYDAAERDIEQRLPAGVHVLDVHNKAD 357
Query: 351 YSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLN 410
+ + LSA G++ LR LL L Q ++AR RH+ +L
Sbjct: 358 AA---AAGAAALAPQALRLSARTGEGLDTLRRRLLQLA-GWQAGSEGVFIARTRHLQALQ 413
Query: 411 EANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCI 470
+L A ++ +++ + L+L+AE+LR H+ L +I G+ T ++LL +IFS+FCI
Sbjct: 414 ATAEHLVRARQLADRA----DAALDLLAEELRLAHDALGAITGRYTPDELLGDIFSRFCI 469
Query: 471 GK 472
GK
Sbjct: 470 GK 471
>gi|205422392|sp|Q0AE55.2|MNME_NITEC RecName: Full=tRNA modification GTPase MnmE
Length = 451
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 204/469 (43%), Positives = 289/469 (61%), Gaps = 22/469 (4%)
Query: 5 NSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIID 64
N I IATPPGRGG+GI+R+SG NL + + + K PR A +F +NN +ID
Sbjct: 4 NDTIAAIATPPGRGGIGIVRISGTNLEQLAQTILGKLPD---PRHAGLFNFLDQNNQVID 60
Query: 65 KGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFL 124
+G+V+YF +P+SYTGEDV+ELHGHGGP ++++LL+ CL++G RLA PGEFT RAFL
Sbjct: 61 QGIVLYFPSPNSYTGEDVLELHGHGGPAVMNLLLTRCLQLGA----RLAEPGEFTLRAFL 116
Query: 125 NNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFP 184
N KLDL Q E + DLI AST +AA+ A+ SL G+FS I+ L+ LI+LR L+E + DFP
Sbjct: 117 NEKLDLAQAEGVADLIEASTANAARCAVRSLHGEFSSAIHQLVSALIDLRVLVEATLDFP 176
Query: 185 EENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSL 244
EE + L +L I+ KL +++ ++ L++ G+ VVL GQPNVGKSSL N L
Sbjct: 177 EEEIDF-LQSAHAVEQLASIQTKLEQVLSASRRGNLLQEGIKVVLTGQPNVGKSSLLNRL 235
Query: 245 VGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304
G ++AIVT I GTTRD I ++I+I + DTAG +++ + VE+ GI R
Sbjct: 236 AGDEIAIVTEIPGTTRDTIRQSIEIEGIPLHLIDTAG-------LRETSDIVEQHGIARA 288
Query: 305 WVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
+ ++ +D+++ + D RY T D ++ P +PV+ V NKID SG I +
Sbjct: 289 YAAIEQADLVLLLVDGRYGV-TKEDHSVLARLPKELPVLTVHNKIDLSGQLSRIEEDTSG 347
Query: 365 ANIYLSASKRIGINLLRNTLLDLIE-KTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
IYLS GI LLR LL + +T Y+AR+RH+ +L A L A +
Sbjct: 348 TAIYLSVKSGEGIELLRTVLLKTVGWQTNIAGEGAYMARQRHLQALLHAKELLKRAETWL 407
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ +++ LE++AE+LR + LSSI G+ T++DLL IFS FCIGK
Sbjct: 408 HTADQ-----LEILAEELRLAQQALSSITGEFTSDDLLGEIFSNFCIGK 451
>gi|30248403|ref|NP_840473.1| tRNA modification GTPase TrmE [Nitrosomonas europaea ATCC 19718]
gi|46577435|sp|Q82XA1.1|MNME_NITEU RecName: Full=tRNA modification GTPase MnmE
gi|30138289|emb|CAD84297.1| GTP-binding protein (HSR1-related):tRNA modification GTPase TrmE
[Nitrosomonas europaea ATCC 19718]
Length = 451
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 204/472 (43%), Positives = 293/472 (62%), Gaps = 22/472 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
+T N I IATPPGRGG+GI+R+SG NL S+ + K PR A SF +N+
Sbjct: 1 MTSNDTIAAIATPPGRGGIGIVRISGTNLESLARGILGKLPD---PRHAGLFSFLDQNSQ 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
IID+G+ +YF +PHSYTGE+V+EL GHGGP ++++LL CL++G RLA PGEFT R
Sbjct: 58 IIDQGIALYFPSPHSYTGEEVLELQGHGGPAVMNLLLDRCLQLGA----RLAEPGEFTLR 113
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q E + DLI AST +AA+ A+ SL G+FS I+ L+ LI+LR L+E +
Sbjct: 114 AFLNDKLDLAQAEGVADLIAASTANAARCAVRSLHGEFSSTIHQLVSALIDLRVLVEATL 173
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFPEE + L +L I+ KL +++ ++ L++ G+ VVL GQPNVGKSSL
Sbjct: 174 DFPEEEIDF-LQSAHAAEQLATIRAKLEQVLVASRQGNLLQEGIKVVLAGQPNVGKSSLL 232
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N L G +VAIVT I GTTRD + ++I+I + DTAG +++ + VE+ GI
Sbjct: 233 NRLAGDEVAIVTDIPGTTRDTVRQSIEIEGIPLHLIDTAG-------LRETSDIVEQHGI 285
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYK 361
RT+ ++ +D+++ + D+R+ T+ D+ ++ P +PV+ V NKID S +
Sbjct: 286 ARTYAAIEQADLVLLLVDSRHGV-TEEDRSVLTRLPERLPVLTVHNKIDLSAQPPRLEEN 344
Query: 362 NNIANIYLSASKRIGINLLRNTLLDLIEKTQTIES-SPYLARERHIHSLNEANYYLSCAI 420
+ IYLSA GI LLR LL I Y+AR+RH+ +L +A L A
Sbjct: 345 TSGPTIYLSAINGEGIELLRAALLKTAGWQANIAGEGAYMARQRHLQALIQAKELLERAA 404
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++++++ LE++AE+LR + LSSI G+ T++DLL IFS FCIGK
Sbjct: 405 AWLHRADQ-----LEILAEELRLAQQALSSITGEFTSDDLLGEIFSSFCIGK 451
>gi|71909809|ref|YP_287396.1| tRNA modification GTPase TrmE [Dechloromonas aromatica RCB]
gi|123626188|sp|Q477Q5.1|MNME_DECAR RecName: Full=tRNA modification GTPase MnmE
gi|71849430|gb|AAZ48926.1| tRNA modification GTPase trmE [Dechloromonas aromatica RCB]
Length = 448
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 213/469 (45%), Positives = 299/469 (63%), Gaps = 22/469 (4%)
Query: 4 KNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNII 63
K+ I IAT PGRGGVG+IR+SG NL + +KT K PR+A+ + F + + I
Sbjct: 2 KSDTIAAIATAPGRGGVGVIRISGSNLLPFAFALTEKTPK---PRYASLADFKAADGSTI 58
Query: 64 DKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAF 123
D GL++YF P S+TGEDV+EL GHGGP+++ MLL+ CL++G RLA PGEF++RAF
Sbjct: 59 DTGLLLYFPNPQSFTGEDVLELQGHGGPVVMQMLLARCLDLGA----RLAEPGEFSRRAF 114
Query: 124 LNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDF 183
LN K+DL Q EA+ DLI+A+T SAA+SA+ SL G+FS+ I L D+LINLR L+E + DF
Sbjct: 115 LNGKMDLAQAEAVADLIDAATASAARSAVRSLQGEFSRAIGELNDELINLRMLVEATLDF 174
Query: 184 PEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNS 243
PEE+ + + N F L +++ KL +I + + L+++GL+VVL GQPNVGKSSL N
Sbjct: 175 PEEDIDFLKAAN-AFGRLERLQLKLAEIFDRAGQGKLLQSGLHVVLAGQPNVGKSSLLNR 233
Query: 244 LVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIER 303
L G D+AIVT IAGTTRD + TIQI I DTAG +++ +EVEKIGIER
Sbjct: 234 LAGDDLAIVTPIAGTTRDALRSTIQIEGIPLHIIDTAG-------LRETDDEVEKIGIER 286
Query: 304 TWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNN 363
+W E++ SD+++ + DAR ++ D++I+ P + I V+NKID + + + N
Sbjct: 287 SWKEIERSDVVLLLVDARTGV-SESDREILARLPDRLQRITVYNKIDLTHRAAERHDEAN 345
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA GI LLR LL + Q ++ARERH+ +L+ A +++ A ++
Sbjct: 346 GTAISLSAKANQGIELLRQELLRIAGWHQA--EDVFIARERHLRALSAAQEHVAAARNVV 403
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ LEL AE+LR + L I G+ T +DLL IFS+FCIGK
Sbjct: 404 EGA----LPALELFAEELRLAQQSLGEITGEFTADDLLGVIFSRFCIGK 448
>gi|395006251|ref|ZP_10390083.1| tRNA modification GTPase TrmE [Acidovorax sp. CF316]
gi|394315776|gb|EJE52550.1| tRNA modification GTPase TrmE [Acidovorax sp. CF316]
Length = 474
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 210/490 (42%), Positives = 302/490 (61%), Gaps = 34/490 (6%)
Query: 1 MLTKNS-PIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKN 59
ML +++ PI+ IAT PGRG VGI+R+SGK + +V+ +C + L+PR A Y F
Sbjct: 1 MLARHADPIVAIATAPGRGAVGIVRVSGKGIAPLVQALCGR---DLRPREAHYLPFRDAE 57
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEI--------GKSI--G 109
ID+GL +YF APHSYTGEDV+EL HGGP++L +L++ CLE G ++ G
Sbjct: 58 GQAIDQGLALYFPAPHSYTGEDVLELQAHGGPVVLQLLVARCLEAAAAAQNEGGPAVLSG 117
Query: 110 LRLAMPGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDK 169
LR+A PGEFT+RAFLN+K+DL Q EAI DLI+AST +AA+SA SL+G FS I+ L D
Sbjct: 118 LRVAEPGEFTERAFLNDKIDLAQAEAIADLIDASTSAAARSASRSLTGAFSSEIHALRDA 177
Query: 170 LINLRTLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVL 229
LI+LR L+E + DFPEE+ + L + D +L +++ L ++ Q+ ++ AL+R G+ VV+
Sbjct: 178 LIHLRMLVEATLDFPEEDIDF-LKQADAQGQLDRLQGTLARVRQRAQQGALLREGIKVVI 236
Query: 230 IGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKI 289
GQPN GKSSL N+L G+++AIVT IAGTTRDK+ +TIQI + DTAG+ D
Sbjct: 237 AGQPNAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRD----- 291
Query: 290 KKNINEVEKIGIERTWVELKNSDIIIYVQD---ARYDKHTDFDKKIIKN----FPMNIPV 342
+ +EVE+IGI R W E+ +D ++++ D A + + D I + P ++PV
Sbjct: 292 --SEDEVERIGIARAWDEIAGADAVLFLHDLSRAHTAAYAESDAAIAADMAQRLPASVPV 349
Query: 343 IYVWNKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLAR 402
I VWNKID + ++ LSA G+ LR TLL+ + Q+ Y+AR
Sbjct: 350 IDVWNKIDCVDQAAAARLQGPGRSVQLSARMGTGLEDLRRTLLE-VAGWQSAPEGVYIAR 408
Query: 403 ERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLD 462
RH+ +L +L A + + L+++AE+LR L +I G+ T++DLL
Sbjct: 409 ARHVQALQAVAAHLDEA----HMQLQARAPALDILAEELRLAQNALGAITGEFTSDDLLG 464
Query: 463 NIFSQFCIGK 472
IFS FCIGK
Sbjct: 465 VIFSSFCIGK 474
>gi|429744329|ref|ZP_19277828.1| tRNA modification GTPase TrmE [Neisseria sp. oral taxon 020 str.
F0370]
gi|429163276|gb|EKY05521.1| tRNA modification GTPase TrmE [Neisseria sp. oral taxon 020 str.
F0370]
Length = 455
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 211/475 (44%), Positives = 288/475 (60%), Gaps = 28/475 (5%)
Query: 3 TKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNI 62
T + I +AT PGRGGVG+IR+SGKNL + + + K KPR A Y+ F N
Sbjct: 4 TPSPTIAAVATAPGRGGVGVIRISGKNLLPLAQQISGG--KTPKPRLALYTDFLDAENRA 61
Query: 63 IDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRA 122
ID GL++YF AP S+TGEDVIEL GHGGP+++ MLLS CLE+G RLA PGEFTKRA
Sbjct: 62 IDSGLMLYFAAPASFTGEDVIELQGHGGPVVMQMLLSRCLELGA----RLAEPGEFTKRA 117
Query: 123 FLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFD 182
FLNNKLDL Q E++ DLI+AS++SAA+ A+ SL G FS+ I+ L+D+LI LR L+E + D
Sbjct: 118 FLNNKLDLAQAESVADLIDASSQSAARMAVRSLKGAFSQHIHALVDELITLRMLVEATLD 177
Query: 183 FPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFN 242
FPEE+ + L D L ++ +L ++ Q ++ A++R G+NVVL+G PNVGKSSL N
Sbjct: 178 FPEEDIDF-LEAADARGRLAGLQGRLKTVLAQAQQGAVLREGMNVVLVGAPNVGKSSLLN 236
Query: 243 SLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302
+L G D+AIVT IAGTTRD + + I ++ ITDTAG+ D + + VEKIGIE
Sbjct: 237 ALAGDDIAIVTDIAGTTRDTVREQITLDGIPVHITDTAGLRDTD-------DTVEKIGIE 289
Query: 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKN 362
R+ L +D+ + + D + + I+ P N+ I V NKID +G +++
Sbjct: 290 RSGKALAEADVALILIDP-AEGLNQKTRDILAALPPNLKKIEVHNKIDLAGTAPSLSDGL 348
Query: 363 NIAN-----IYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
+ + I LSA G++LL+ LL I Q +LAR RH H+L A L
Sbjct: 349 TLESGADTLIALSAKTGAGLDLLKQALLQQI-GWQGESEGLFLARRRHTHALETAQSEL- 406
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + +EL+AE LR S I G+ T +DLL IFS+FCIGK
Sbjct: 407 ------DNAALCGSGQIELMAEHLRLAQAACSEITGEFTADDLLGVIFSRFCIGK 455
>gi|319796642|ref|YP_004158282.1| tRNA modification GTPase trme [Variovorax paradoxus EPS]
gi|315599105|gb|ADU40171.1| tRNA modification GTPase TrmE [Variovorax paradoxus EPS]
Length = 469
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 199/483 (41%), Positives = 297/483 (61%), Gaps = 39/483 (8%)
Query: 7 PIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKG 66
PI+ IAT GRG VGI+R+SG L ++E +C + LKPR ATY F ++ +D G
Sbjct: 9 PIVAIATASGRGAVGIVRVSGARLAPLIEAICGRA---LKPREATYLPFRDADDEPVDHG 65
Query: 67 LVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSI----------GLRLAMPG 116
L I+F +P+S+TGEDV+EL HGG ++L +LL+ CLE GLR+A PG
Sbjct: 66 LAIHFPSPNSFTGEDVLELQAHGGTVVLQLLLARCLEAAAEADPVTGRPRLPGLRVAEPG 125
Query: 117 EFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTL 176
EF++RAFLN K+DL Q EAI DLI+ASTE+AA+SA SLSG FS+ I+ L D LI+LR L
Sbjct: 126 EFSQRAFLNGKIDLAQAEAIADLIDASTEAAARSAGRSLSGAFSREIHTLRDALIHLRML 185
Query: 177 IEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVG 236
+E + DFPEE + L K D +L +++ +L + Q+ K+ AL+R G+ VV+ GQPN G
Sbjct: 186 VEATLDFPEEEIDF-LQKADATGQLARLQTQLAAVQQRAKQGALLREGIKVVIAGQPNAG 244
Query: 237 KSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEV 296
KSSL N+L G+++AIV+++AGTTRD +++TIQI+ + DTAG ++++ +EV
Sbjct: 245 KSSLLNALAGAELAIVSAVAGTTRDVVSQTIQIHGVPLHVADTAG-------LRESSDEV 297
Query: 297 EKIGIERTWVELKNSDIIIYVQDARYDKHTDF---DKKIIKN----FPMNIPVIYVWNKI 349
E+IG+ R W +++++D ++++ D D+ D +I++ P ++PV+ VWNK
Sbjct: 298 EQIGVARAWGQIESADAVLFLHDLTRAAQPDYAAADAEILRGLQGKLPASVPVLDVWNKQ 357
Query: 350 DYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSL 409
D + I LSA +GI LR+ LL + Q++ YLAR RH+ +L
Sbjct: 358 DAAPTAAPAR------GIALSAKTGLGIEALRDQLLAMA-GWQSVPEGVYLARARHVQAL 410
Query: 410 NEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFC 469
+ + + + + L+L+AE+LR L+ I G+ +DLL IFS+FC
Sbjct: 411 GK----VETHLALAASHLAAQAQLLDLLAEELRLAQNALNEITGEFGADDLLGVIFSRFC 466
Query: 470 IGK 472
IGK
Sbjct: 467 IGK 469
>gi|348589713|ref|YP_004874175.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Taylorella
asinigenitalis MCE3]
gi|347973617|gb|AEP36152.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Taylorella
asinigenitalis MCE3]
Length = 445
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 208/472 (44%), Positives = 299/472 (63%), Gaps = 27/472 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M+ ++ I +AT PGRGG+G++R+SG L + + + K ++KPR A Y+ F+
Sbjct: 1 MIMQSDIIAAVATAPGRGGIGVVRVSGPKLGAFAQAISKGL--EIKPRTAQYTDFYDAEG 58
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+ ID GL++YF APHS+TGEDVIEL GHGGP+IL+M+L CLE+G RLA PGEF+K
Sbjct: 59 HAIDNGLLLYFPAPHSFTGEDVIELQGHGGPVILNMVLGRCLELGA----RLAEPGEFSK 114
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLNNK+DL Q E+I DLI+AS+E AA+ A+ SL G FS L++ L+ K+INLR L+E +
Sbjct: 115 RAFLNNKIDLTQAESIADLIDASSEKAARMALRSLKGAFSDLVSDLVAKVINLRMLVEAT 174
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + L D +L I+++L ++I Q + ++R GL+V L+G PNVGKSSL
Sbjct: 175 LDFPEEEIDF-LEAADAMGQLRVIQEQLDRVISQANQGTIMREGLHVALVGMPNVGKSSL 233
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G ++AIVT IAGTTRD + I I+ DTAG +++ + VE+IG
Sbjct: 234 LNALSGEEIAIVTDIAGTTRDVVRNFIHIDGVPVHFMDTAG-------LRETEDIVERIG 286
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IER+ L+++D+ + + D R +K++ F ++ P + +YV NKID G QK +
Sbjct: 287 IERSEKSLQDADVALILMDPREEKNSKF-IATLQEIPKGVKRLYVHNKIDLYG-QKPMRD 344
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
++I LSA G+ LL+ LL+ I Q +LAR RH+++L EA L A
Sbjct: 345 GDDIC---LSAKTGDGLELLKTALLE-IAGWQGESEGLFLARTRHMNALREAKGQLEHAR 400
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+I + L+L AE LR E+L++I G+ T +DLL IFS+FCIGK
Sbjct: 401 EIAYE-------GLDLFAEHLRLAQEQLNTITGEFTADDLLGEIFSRFCIGK 445
>gi|121611908|ref|YP_999715.1| tRNA modification GTPase TrmE [Verminephrobacter eiseniae EF01-2]
gi|205829187|sp|A1WSU0.1|MNME_VEREI RecName: Full=tRNA modification GTPase MnmE
gi|121556548|gb|ABM60697.1| tRNA modification GTPase trmE [Verminephrobacter eiseniae EF01-2]
Length = 490
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 202/506 (39%), Positives = 295/506 (58%), Gaps = 51/506 (10%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
+ ++ PI+ IA+ GRG +GI+R+SG L ++ + +C + L+PR ATY +F
Sbjct: 1 MRRHDPIVAIASAAGRGAIGIVRVSGNALGALAQALCGRA---LQPRMATYLAFRDARGQ 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSI----------GLR 111
ID+GL +YF PHSYTGEDV+EL HGGP++L +LL+ CLE G GLR
Sbjct: 58 PIDQGLALYFPGPHSYTGEDVLELQAHGGPVVLQLLLARCLEAGAGADPATGRPCLPGLR 117
Query: 112 LAMPGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLI 171
LA PGEFT+RAFLN+K+DL Q EAI DLI+ASTE+AA+SA SLSG FS I+ L D LI
Sbjct: 118 LAQPGEFTERAFLNDKIDLAQAEAIADLIDASTEAAARSASRSLSGAFSAGIHGLCDALI 177
Query: 172 NLRTLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIG 231
LRTL+E S DFPEE + L++ D +L ++++ L ++QQ ++ AL+R+G+ VV+ G
Sbjct: 178 ALRTLVEASLDFPEEETDF-LHQADARGQLSRLRQALGAVLQQARQGALLRDGIEVVIAG 236
Query: 232 QPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKK 291
QPN GKSSL N+L G+++AIVT +AGTTRDK+ +TIQI +I DTAG ++
Sbjct: 237 QPNAGKSSLLNALAGAELAIVTPVAGTTRDKVQQTIQIEGVPLRIIDTAG-------LRA 289
Query: 292 NINEVEKIGIERTWVELKNSDIIIYVQD---ARYDKH----TDFDKKIIKNFPMNIPVIY 344
+ +EVE+IGI R+W + +D ++++ D A+ K+ + ++ + + P + VI
Sbjct: 290 SDDEVERIGIARSWEAMAAADAVLFLHDLARAQTPKYIADDAEIERALARKLPPGVAVID 349
Query: 345 VWNKIDYSGHQKNINYKNN------------------IANIYLSASKRIGINLLRNTLLD 386
VWNK+D + + LSA G++ LR LL+
Sbjct: 350 VWNKLDCVAAPAELAAPTAPTESAAVPPASARPAPAPRPAVQLSARTGQGLDGLRRILLE 409
Query: 387 LIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHE 446
+ Q++ +AR RH+ +L A +L A + E E +
Sbjct: 410 -VAGWQSVPEGICIARARHVQALQMAAAHLEQAADQLQARGAALELLAEELRLA----QN 464
Query: 447 KLSSIIGKSTTNDLLDNIFSQFCIGK 472
L SI G T++DLL IF++FCIGK
Sbjct: 465 ALDSITGAFTSDDLLGAIFARFCIGK 490
>gi|171061051|ref|YP_001793400.1| tRNA modification GTPase TrmE [Leptothrix cholodnii SP-6]
gi|205415776|sp|B1Y0F6.1|MNME_LEPCP RecName: Full=tRNA modification GTPase MnmE
gi|170778496|gb|ACB36635.1| tRNA modification GTPase TrmE [Leptothrix cholodnii SP-6]
Length = 479
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 207/492 (42%), Positives = 296/492 (60%), Gaps = 33/492 (6%)
Query: 1 MLTKN-SPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKN 59
ML ++ PI IAT PGRG VGI+R+SG+ L ++ + + L+PR A+Y F +
Sbjct: 1 MLPRHHEPIAAIATAPGRGAVGIVRVSGRGLTALATALVGRP---LRPRVASYGPFLDRQ 57
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIG---------L 110
ID+GL ++F APHSYTGEDV+EL HGGP++L +LL+ CLE IG L
Sbjct: 58 GGAIDRGLALHFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAGEIGTDGRPRLPGL 117
Query: 111 RLAMPGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKL 170
RLA PGEFT+RA+LN+KLDL Q EA+ DLI+ASTE+AA+SA SLSG FS+ I L D L
Sbjct: 118 RLAQPGEFTERAYLNDKLDLAQAEAVADLIDASTEAAARSAARSLSGDFSRQITHLRDGL 177
Query: 171 INLRTLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLI 230
I LR L+E + DFPEE + L + D L ++ ++L ++ ++ AL+R GL VV+
Sbjct: 178 IELRALVEATLDFPEEEIDF-LQRADAHGRLARLAERLAGLLDTARQGALLREGLRVVIA 236
Query: 231 GQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIK 290
GQPN GKSSL N+L G+++AIVT I GTTRDKI++TIQI + DTAG+ +
Sbjct: 237 GQPNAGKSSLLNALAGAELAIVTPIPGTTRDKISETIQIEGVPVHVIDTAGL----RSDE 292
Query: 291 KNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDF---DKKIIKNFPMNIPVIYVWN 347
+ +EVE+IGI R+W + +D ++ + D + + D I + P ++ +I+V N
Sbjct: 293 QAGDEVERIGISRSWQAIAEADAVLLLHDLTREHEPAYSAADTAIAQRLPADVGLIHVHN 352
Query: 348 KIDYSGHQ-------KNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYL 400
K D + Q + A + LSA GI+ LR LL E ++
Sbjct: 353 KADAAPEQAARVAARLAARQAGDAAGVVLSARTHDGIDALRAALLARAGWHAAPEGV-FI 411
Query: 401 ARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDL 460
ARERH+ +L A +++ A QS + L+L+AE+LR H+ L+ I G +++DL
Sbjct: 412 ARERHVRALRAAATHVTAAQGWAEQS----DSALDLLAEELRSAHDALAEITGSYSSDDL 467
Query: 461 LDNIFSQFCIGK 472
L +IF +FCIGK
Sbjct: 468 LGDIFGRFCIGK 479
>gi|349575420|ref|ZP_08887337.1| tRNA modification GTPase TrmE [Neisseria shayeganii 871]
gi|348012999|gb|EGY51926.1| tRNA modification GTPase TrmE [Neisseria shayeganii 871]
Length = 453
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 205/476 (43%), Positives = 292/476 (61%), Gaps = 28/476 (5%)
Query: 2 LTKNSPIIG-IATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
++ + P+I IAT PGRGGVG++RLSGK+L + + + K PR A Y+ F+
Sbjct: 1 MSSSLPVIAAIATAPGRGGVGVVRLSGKDLLPLAQTLSGG--KTPTPRMAVYTDFYDAQG 58
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+ ID GL++YF AP S+TGEDVIEL GHGGP+++ MLL CL++G RLA PGEFTK
Sbjct: 59 DTIDNGLLLYFAAPASFTGEDVIELQGHGGPVVMQMLLQRCLQLGA----RLAEPGEFTK 114
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLNNKLDL Q E++ DLI+AS++SAA+ A+ SL G FS I L+D LI LR L+E +
Sbjct: 115 RAFLNNKLDLAQAESVADLIDASSQSAARMALRSLKGAFSDHIRRLVDDLITLRMLVEAT 174
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + L D +L ++ +L ++QQ ++ A++R G+NVVL+G PNVGKSSL
Sbjct: 175 LDFPEEEIDF-LEAADAKGKLAALQTQLAAVLQQAQQGAILREGMNVVLVGAPNVGKSSL 233
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G D+AIVT IAGTTRD + + I ++ I DTAG +++ + VE+IG
Sbjct: 234 LNALAGDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAG-------LRETDDVVEQIG 286
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
I+R+ ++ +D+ + + D + + + I+ P ++ I + NKID G +
Sbjct: 287 IQRSQKAVQEADVALILIDPQ-EGINPTTRAILDRLPESLKRIEIHNKIDLRGTEPGAGR 345
Query: 361 KNNIAN----IYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYL 416
+++ I LSA G++LL+ LLD I Q S +LAR RH+H+L +A L
Sbjct: 346 SGSLSGADTVIRLSAKTGAGLDLLKQALLDEI-GWQGESESLFLARSRHLHALRQAQEEL 404
Query: 417 SCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ A N LEL+AE LR + I G+ T +DLL IFS+FCIGK
Sbjct: 405 ALAALCGNH-------QLELLAEHLRLAQAACNEITGEFTADDLLGVIFSRFCIGK 453
>gi|423014859|ref|ZP_17005580.1| tRNA modification GTPase TrmE [Achromobacter xylosoxidans AXX-A]
gi|338782109|gb|EGP46486.1| tRNA modification GTPase TrmE [Achromobacter xylosoxidans AXX-A]
Length = 419
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 198/437 (45%), Positives = 279/437 (63%), Gaps = 18/437 (4%)
Query: 36 IVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILH 95
+V + +++L PR A Y F + ++D+G+ +YFK PHSYTGEDV+EL GHGGP +L
Sbjct: 1 MVRRLFQRELTPRHAHYLPFKAVDGELLDEGIALYFKGPHSYTGEDVLELQGHGGPAVLR 60
Query: 96 MLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISL 155
+L SCL G+ +GLRLA PGEFT+RAFLN+++DL Q EA+ DLI AS+ +AA+ AM SL
Sbjct: 61 RVLDSCLAAGRDLGLRLAEPGEFTRRAFLNDRMDLAQAEAVADLIEASSVAAARGAMASL 120
Query: 156 SGKFSKLINILLDKLINLRTLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQG 215
SG+FS +N L D++I+LR L+E + DFPEE + L K L K+ L +I Q
Sbjct: 121 SGEFSARVNDLSDRIIHLRMLVEATLDFPEEEIDF-LEKYQARPTLEKLAGDLGHLIAQA 179
Query: 216 KKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFK 275
++ ++R GL+VVL GQPNVGKSSL N+L G DVAIVT IAGTTRDK+ + I I+
Sbjct: 180 RQGVILREGLHVVLAGQPNVGKSSLLNALAGDDVAIVTPIAGTTRDKVVQQIHIDGVPLH 239
Query: 276 ITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKN 335
I DTAG +++ + VE IGI R+W E++ +D+I+++QDA D +I
Sbjct: 240 IVDTAG-------LRETEDTVESIGIARSWQEIERADVILHLQDA-TQPGDQLDAQITAR 291
Query: 336 FPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIE 395
P PV+ V+NK+D + + + +SA + G++ LR LL + E
Sbjct: 292 LPPRTPVLKVFNKVDL----LSTAFTAGPGELGISAKRGAGLDALRAELLRIAGWNPGAE 347
Query: 396 SSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKS 455
SP+LARERH+H+L +A +L+ A + Q ++ L+L AE+LR H+ LSSI GK
Sbjct: 348 -SPWLARERHLHALQDAADHLALAAEHAEQD----DRVLDLFAEELRLAHDSLSSITGKF 402
Query: 456 TTNDLLDNIFSQFCIGK 472
T++DLL IFS FCIGK
Sbjct: 403 TSDDLLGEIFSSFCIGK 419
>gi|394990089|ref|ZP_10382921.1| hypothetical protein SCD_02515 [Sulfuricella denitrificans skB26]
gi|393790354|dbj|GAB72560.1| hypothetical protein SCD_02515 [Sulfuricella denitrificans skB26]
Length = 446
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 204/466 (43%), Positives = 286/466 (61%), Gaps = 27/466 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKT-KKQLKPRFATYSSFFCKNNNIIDKG 66
I IAT GRGG+G++R+SG++L + KK K PR AT S F + +ID+G
Sbjct: 7 IAAIATAHGRGGIGVVRVSGEDL----RVFAKKILGKNSLPRVATLSDFLGADGEVIDQG 62
Query: 67 LVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNN 126
+ + F APHSYTG+DV+EL GHGG +L +LS CLE+G R A PGEFT+RAFLN+
Sbjct: 63 IALSFPAPHSYTGQDVLELQGHGGDAVLRRVLSRCLELGA----RPAEPGEFTQRAFLND 118
Query: 127 KLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEE 186
K+DL Q E++ DLI+A+T AAK+AM SL G+FS I+ L+D L +LR L+E + DFPEE
Sbjct: 119 KMDLAQAESVADLIDAATVEAAKTAMRSLRGEFSHAIHQLVDALTSLRMLVEATLDFPEE 178
Query: 187 NQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVG 246
+ L +++ N+L+ I +L K+ Q K+ +L+R GL++VLIGQPNVGKSSL N L G
Sbjct: 179 EIDF-LEESNALNQLVAISAQLDKVFHQAKQGSLLREGLHIVLIGQPNVGKSSLLNQLAG 237
Query: 247 SDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWV 306
+V+IVT +AGTTRD I + I+I DTAG +++ EVEKIGI RTW
Sbjct: 238 EEVSIVTPVAGTTRDAIRQHIEIEGVALHFIDTAG-------LRETDEEVEKIGIARTWS 290
Query: 307 ELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIAN 366
++ ++ + + DA D II P +P++ V+NK+D G + ++ +
Sbjct: 291 AIQQANAALLLIDA-AKGIAPVDLDIITKLPSGLPLLRVFNKVDLLGQEPRVDVVGGTVD 349
Query: 367 IYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQS 426
IYLSA G++LL LL ++ QT ++ARERH+ +L A L+ A
Sbjct: 350 IYLSAKTGAGVDLLHEHLLRVV-GWQTGGEGVFIARERHLSALRVAKERLTLA------- 401
Query: 427 EKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
E +E AE+LR LSSI G+ T++DLL IFS+FCIGK
Sbjct: 402 -ATCEGRVEFFAEELRLAQNALSSITGEFTSDDLLGEIFSRFCIGK 446
>gi|332286178|ref|YP_004418089.1| tRNA modification GTPase TrmE [Pusillimonas sp. T7-7]
gi|330430131|gb|AEC21465.1| tRNA modification GTPase TrmE [Pusillimonas sp. T7-7]
Length = 488
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 218/504 (43%), Positives = 307/504 (60%), Gaps = 51/504 (10%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
+ + PI+ IAT PGRGG+G++R+SG L ++ + +KPR A Y F ++
Sbjct: 3 MHSHDPIVAIATAPGRGGIGVVRVSGNQLEPLI---SRLFTTPIKPRHAHYLPFNDEHGK 59
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
ID G+V++FK P SYTGEDV+EL GHGGP +L LL+ CL+ GK +G+R A PGEFT R
Sbjct: 60 AIDAGIVLFFKGPQSYTGEDVLELQGHGGPAVLRRLLARCLDAGKDLGIRHAEPGEFTHR 119
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN +LDL Q EA+ DLI+AS+E+AA+SAM SLSG FS +N L D++++LR L+E +
Sbjct: 120 AFLNERLDLAQAEAVADLIDASSEAAARSAMASLSGAFSDQVNALGDRIVHLRMLVEATL 179
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFPEE + L K L I+K L + QQ ++ ++R GL+VVL GQPNVGKSSL
Sbjct: 180 DFPEEEIDF-LEKYQARAALEAIRKDLQHLTQQARQGMILREGLHVVLAGQPNVGKSSLL 238
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G D+AIVT IAGTTRDK+ + I I I DTAG +++ + VE IGI
Sbjct: 239 NALAGDDIAIVTPIAGTTRDKVIQQIHIQGVPLHIVDTAG-------LRETEDTVESIGI 291
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDY---------- 351
RTW E++ +++II++QDAR ++ + D I + P PV+ V+NKID
Sbjct: 292 ARTWAEIEKANVIIHLQDARA-QNDELDTAITRRLPARTPVLKVFNKIDLLPENEQAHFQ 350
Query: 352 -------------SGH----------QKNINYKNNIANIYLSASKRIGINLLRNTLLDLI 388
GH QK + +A + +SA G++ LR LL++
Sbjct: 351 PGTVSTLATDSTSPGHSTGKASDPSAQKASDDHQELA-LGISAKTGAGLDTLRQQLLNIA 409
Query: 389 EKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKL 448
E SP+LARERH+ +L A+ +L+ A + +Q+ ++ L+L AE+LR HE+L
Sbjct: 410 GWNPGSE-SPWLARERHLTALQHASEHLALAHEHASQN----DRVLDLFAEELRLAHEEL 464
Query: 449 SSIIGKSTTNDLLDNIFSQFCIGK 472
I G+ T++DLL IFS FCIGK
Sbjct: 465 CLITGQFTSDDLLGEIFSSFCIGK 488
>gi|375108287|ref|ZP_09754548.1| tRNA modification GTPase TrmE [Burkholderiales bacterium JOSHI_001]
gi|374669018|gb|EHR73803.1| tRNA modification GTPase TrmE [Burkholderiales bacterium JOSHI_001]
Length = 465
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 201/473 (42%), Positives = 289/473 (61%), Gaps = 21/473 (4%)
Query: 5 NSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIID 64
PI+ IAT PGRG VGI+R+SG+ L +V+ + ++ L PR AT+ F + + ID
Sbjct: 9 QDPIVAIATAPGRGAVGILRVSGRGLAPLVQALLGRS---LVPRVATFLPFRDEADQPID 65
Query: 65 KGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFL 124
+GL ++F APHSYTGEDV+EL HGG + L +LL+ CL+ G +GLRLA PGEFT+RAFL
Sbjct: 66 QGLALHFPAPHSYTGEDVLELQAHGGAVGLQLLLARCLQAGAGLGLRLAEPGEFTQRAFL 125
Query: 125 NNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFP 184
N+KLDL Q EA+ DLI+ASTE+AA+SA SL+G FS + L +L++LRTL+E + DFP
Sbjct: 126 NDKLDLAQAEAVADLIDASTEAAARSAGRSLAGVFSHTVKALAAQLLDLRTLVEATLDFP 185
Query: 185 EENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSL 244
EE + L K L + ++L + Q+ ++ AL+R GL VVL GQPNVGKSSL N+L
Sbjct: 186 EEEIDF-LEKARARERLDALTRELAAVQQRTRQGALLREGLRVVLAGQPNVGKSSLLNAL 244
Query: 245 VGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304
G+++AIVT IAGTTRD++++TIQ+ ITDTAG+ +S +EVE+IGI R+
Sbjct: 245 AGAELAIVTPIAGTTRDRVSETIQVQGVPLHITDTAGLRRDDSA----GDEVERIGISRS 300
Query: 305 WVELKNSDIIIYVQDA---RYDKHTDFDKKIIKNFPMNIP--VIYVWNKIDYSGHQKNIN 359
W + +D ++++ D + + +I + P +++V NK D +
Sbjct: 301 WQAIGEADAVLFLHDQSRRAEPAYEAAEAQIARRLADVAPDHLVHVHNKADLA---PQAL 357
Query: 360 YKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCA 419
N + LSA G+ LR LL + Q ++AR RH+ +L A +L+ A
Sbjct: 358 PPVNEPGVALSAKNGQGLEALRERLL-AVAGWQARPEGLFIARTRHVQALQRAAEHLAGA 416
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + L+L+AE+LR H L I G+ T ++LL +IF FCIGK
Sbjct: 417 QAHAAQR----DAALDLLAEELRLAHAALGEITGQVTPDELLGHIFGSFCIGK 465
>gi|399116239|emb|CCG19044.1| tRNA modification GTPase MnmE [Taylorella asinigenitalis 14/45]
Length = 443
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 207/465 (44%), Positives = 294/465 (63%), Gaps = 27/465 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I +AT PGRGG+G++R+SG L + + + K +KPR A Y+ F+ + ID GL
Sbjct: 6 IAAVATAPGRGGIGVVRVSGPKLGAFAQAISKGL--DIKPRTAQYTDFYDAEGHAIDNGL 63
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++YF APHS+TGEDVIEL GHGGP+IL+M+L CLE+G RLA PGEF+KRAFLNNK
Sbjct: 64 LLYFPAPHSFTGEDVIELQGHGGPVILNMVLGRCLELGA----RLAEPGEFSKRAFLNNK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q E+I DLI+AS+E AA+ A+ SL G FS L++ L+ K+INLR L+E + DFPEE
Sbjct: 120 IDLTQAESIADLIDASSEKAARMALRSLKGAFSDLVSDLVAKVINLRMLVEATLDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L D +L I+++L ++I Q + ++R GL+V L+G PNVGKSSL N+L G
Sbjct: 180 IDF-LEAADAMGQLRVIQEQLDRVISQANQGTIMREGLHVALVGMPNVGKSSLLNALSGE 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
++AIVT IAGTTRD + I I+ DTAG +++ + VE+IGIER+
Sbjct: 239 EIAIVTDIAGTTRDVVRNFIHIDGVPVHFMDTAG-------LRETEDIVERIGIERSEKS 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANI 367
L+++D+ + + D R +K++ F ++ P + +YV NKID G QK + + +I
Sbjct: 292 LQDADVALILMDPREEKNSKF-IATLQEIPKGVKRLYVHNKIDLYG-QKPMRDGD---DI 346
Query: 368 YLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSE 427
YLSA G+ L+ LL+ I Q +LAR RH+++L EA L A +I +
Sbjct: 347 YLSAKTGDGLEFLKKALLE-IAGWQGESEGLFLARTRHMNALREAKGQLEHAREIAYE-- 403
Query: 428 KNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L+L AE LR E+L++I G+ T +DLL IFS+FCIGK
Sbjct: 404 -----GLDLFAEHLRLAQEQLNTITGEFTADDLLGEIFSRFCIGK 443
>gi|442771345|gb|AGC72034.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [uncultured bacterium
A1Q1_fos_500]
Length = 460
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 207/478 (43%), Positives = 289/478 (60%), Gaps = 24/478 (5%)
Query: 1 MLTKN-SPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKN 59
MLT++ PI+ IAT GRG VGI+R+SG L +V++ + + R ATY F
Sbjct: 1 MLTQSLDPIVAIATAAGRGAVGIVRVSGVGLAPLVQMWLGRVPRA---REATYLPFPDAQ 57
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSI--GLRLAMPGE 117
ID GL ++F APHS+TGEDV+E+ HGGP++L +LL+ CL I + LRLA PGE
Sbjct: 58 GQPIDHGLALWFPAPHSFTGEDVLEIQAHGGPVVLQLLLARCLAIATTALPRLRLAQPGE 117
Query: 118 FTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLI 177
F++RAFLN+K+DL Q EAI DLI ASTE+AA+SA SLSG FS+ I+ L D LI+LR L+
Sbjct: 118 FSQRAFLNDKIDLAQAEAIADLIEASTEAAARSASRSLSGAFSQDIHALRDGLIHLRMLV 177
Query: 178 EFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGK 237
E + DFPEE + L ++D +L+K+K++ I Q+ + AL+R G+ VV+ GQPN GK
Sbjct: 178 EATLDFPEEEIDF-LRQSDAQGQLLKLKQQHAHIQQRAHQGALLREGMRVVIAGQPNAGK 236
Query: 238 SSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVE 297
SSL N+L G+++AIVT IAGTTRDK+ +TIQI + DTAG+ D + +EVE
Sbjct: 237 SSLLNALAGAELAIVTPIAGTTRDKVEQTIQIEGVPLHVVDTAGLRD-------SSDEVE 289
Query: 298 KIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIP---VIYVWNKIDYSGH 354
+IGI R W E+ +D ++ + D +H D+ P I+VWNK D +
Sbjct: 290 QIGIARAWHEIHGADAVLLLHDLTRIEHADYATADAAIEAAIAPHIDKIHVWNKCDTA-- 347
Query: 355 QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ ++ LSA IG+N LR+ LL + Q Y+ARERH+ +L
Sbjct: 348 TATALARAAAEDVVLSAKTGIGLNDLRHRLLQAV-GWQAAPEGLYMARERHLRALAAVRD 406
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + A + N +L+L+AE+LR L I G+ T +DLL IFS FCIGK
Sbjct: 407 HFTAAEDWLGAG--NL--HLDLLAEELRLAQTALGEITGEFTADDLLGEIFSSFCIGK 460
>gi|291615448|ref|YP_003525605.1| tRNA modification GTPase TrmE [Sideroxydans lithotrophicus ES-1]
gi|291585560|gb|ADE13218.1| tRNA modification GTPase TrmE [Sideroxydans lithotrophicus ES-1]
Length = 447
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 195/472 (41%), Positives = 287/472 (60%), Gaps = 25/472 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M K I IAT PGRGG+G++R+SG L ++ I+ T +L PR ATY+SF +
Sbjct: 1 MSLKPDNIAAIATAPGRGGIGVVRVSGSGLAAMAIIL---TGNRLTPRLATYTSFLAADG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+ +D+G+ ++F APHSYTGE+V+EL GHGGP +L LL CLE+G RLA PGEFT+
Sbjct: 58 STLDQGICLFFPAPHSYTGEEVLELQGHGGPAVLQSLLHRCLELGA----RLAQPGEFTQ 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+K+DL Q E++ DLI+A+TE AA+SAM SL G+FS I+ + +LI+LR L+E +
Sbjct: 114 RAFLNDKMDLAQAESVADLIDATTEQAARSAMRSLQGEFSAAIHHAVSQLIDLRMLVEAT 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE E ++ ++L + L +I K+ +++R G VVL+G PN GKSSL
Sbjct: 174 LDFPEEEIE-TADRLLCASKLNILMDGLARIAGLAKQGSILREGAQVVLVGAPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N G ++A+V+ I GTTRD I + +Q+ + DTAG+ + N + VE++G
Sbjct: 233 LNRFAGEEIALVSEIPGTTRDSIRQALQVRGVPLHLIDTAGLRETN-------DAVEQMG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
I RT + L +D+++ + D + D ++ P P +Y+ NK+D SGH +
Sbjct: 286 IARTKLALTRADVVLVLLDESRRRTEPEDFAVLAQLPAKTPCLYLHNKVDLSGHMPGVEI 345
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
+ +IYLSA G+ +L LL+ I Q E+ ++AR RH+ +L A +L A
Sbjct: 346 DADKIHIYLSAKTGAGMEVLEEKLLESIGWHQ--ETGVFMARTRHLEALATAGLHLEGAR 403
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ I++ E+ AE+LR E LSSI G+ + +DLL IFS+FCIGK
Sbjct: 404 QQIDRP--------EIFAEELRHAQEALSSITGEFSADDLLGEIFSRFCIGK 447
>gi|372487519|ref|YP_005027084.1| tRNA modification GTPase TrmE [Dechlorosoma suillum PS]
gi|359354072|gb|AEV25243.1| tRNA modification GTPase TrmE [Dechlorosoma suillum PS]
Length = 450
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 204/477 (42%), Positives = 296/477 (62%), Gaps = 32/477 (6%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M+ + PI IAT PGRGGVG++R+SG L + E + T + +PR AT + F +
Sbjct: 1 MMPRTDPIAAIATAPGRGGVGVVRISGSGLLPLAE---QLTGRLPRPRHATLADFRAADG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
++ID GL+++F P S+TGEDV+EL GHGGP++L MLL+ CL++G RLA PGEFT+
Sbjct: 58 SVIDSGLLLFFPNPSSFTGEDVLELQGHGGPVVLQMLLARCLDLGA----RLAEPGEFTR 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN KLDL Q EA+ DLI+A+T++AA+SA+ SL G+FS+ I +L D+LI LR L E +
Sbjct: 114 RAFLNGKLDLAQAEAVADLIDATTQAAARSAVRSLQGEFSREIRVLTDELIELRALTEAT 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + + N F L + +L + + ++ L++NGL+VVL GQPNVGKSSL
Sbjct: 174 LDFPEEEIDFLKAAN-AFGRLDSLAARLEAVFDRARQGRLLQNGLHVVLAGQPNVGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N L G ++AIVT IAGTTRD + +QI + DTAG +++ +EVE++G
Sbjct: 233 LNGLAGDELAIVTPIAGTTRDVVRGNLQIEGIPLHVIDTAG-------LRETEDEVERLG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSG-----HQ 355
IERTW E++ +D+++ + DAR + ++ I++ P ++P I V+NKID + H+
Sbjct: 286 IERTWREIEKADVLVLLADAR-EGIAHGEEAILRRLPPDLPRITVYNKIDLTDRAPERHE 344
Query: 356 KNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYY 415
+ + +A I LSA G++LLR LL + + ++ARERH+ +L A +
Sbjct: 345 EPEGGEGCVA-ISLSAKSGAGLDLLRRELLRIAGWHEA--EDVFIARERHLRALAAAQEH 401
Query: 416 LSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L Q + LEL AE+LR L I G+ T +DLL IF +FCIGK
Sbjct: 402 L--------QLSRQRLPALELFAEELRLAQNALCHITGEFTADDLLGEIFGRFCIGK 450
>gi|296137607|ref|YP_003644849.1| tRNA modification GTPase TrmE [Thiomonas intermedia K12]
gi|295797729|gb|ADG32519.1| tRNA modification GTPase TrmE [Thiomonas intermedia K12]
Length = 472
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 203/485 (41%), Positives = 308/485 (63%), Gaps = 28/485 (5%)
Query: 1 MLTKNS-PIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKN 59
+L +++ PI+ IAT PGRG VGI+R SGK+L ++ + + T + L PR ATY F
Sbjct: 3 LLAQDADPIVAIATAPGRGAVGIVRASGKSLGALAQAI---TGRALLPRHATYLPFGDGQ 59
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFT 119
+ID+GL ++F APHSYTGEDV+EL HGGP++L +LL+ LE+G S LR+A PGEFT
Sbjct: 60 GGVIDRGLALFFPAPHSYTGEDVLELQIHGGPVVLQLLLARLLELGASSRLRVAQPGEFT 119
Query: 120 KRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEF 179
+RAFLN KLDL Q E++ DLI ASTE+AA+SA +L+G+ S+ + L +L+ LR L+E
Sbjct: 120 RRAFLNGKLDLAQAESVADLIEASTEAAARSATRALAGELSQAVRALAAELVELRLLVEA 179
Query: 180 SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
+ DFPEE+ + L + L +++ L ++ + ++ AL+R GL VVL GQPNVGKSS
Sbjct: 180 TLDFPEEDIDF-LRQAQAQRRLQALQQTLQQVQAKTRQGALLREGLQVVLAGQPNVGKSS 238
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N+L G+++AIVT IAGTTRDK+++TIQI I DTAG+ D + + VE+I
Sbjct: 239 LLNALAGAELAIVTPIAGTTRDKVSQTIQIEGVPLHIVDTAGLRD-------SADAVERI 291
Query: 300 GIERTWVELKNSDIIIYVQD---ARYDKHTDFDKKIIKNFPMNIPVIYVWNKID--YSGH 354
G+ER+W + +D+++++ D + + + +I + P P+++V+NK D +G
Sbjct: 292 GVERSWHAIAGADVVVFLHDLTRLQAPGYAQAEAEIARGLPKGAPLLHVFNKRDCVETGA 351
Query: 355 QKNINYK-------NNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIH 407
Q + + ++++SA+ G+ LR LL L T E ++AR+RH+
Sbjct: 352 QARLLPQVWAQWGVEAGESVWISAATGDGLQGLRLKLLQLAGAQPTSEGV-FIARQRHVQ 410
Query: 408 SLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQ 467
+L + +L A+ +I E + + L+L+AE+LR H+ L +I G+ T +DLL IFS
Sbjct: 411 ALEQTGQHLGAALHLI---ELDAQAPLDLLAEELRLSHQALMAITGEYTPDDLLGAIFSS 467
Query: 468 FCIGK 472
FCIGK
Sbjct: 468 FCIGK 472
>gi|56477029|ref|YP_158618.1| tRNA modification GTPase TrmE [Aromatoleum aromaticum EbN1]
gi|81821140|sp|Q5P4P5.1|MNME_AROAE RecName: Full=tRNA modification GTPase MnmE
gi|56313072|emb|CAI07717.1| Thiophene and furan oxidation protein ThdF [Aromatoleum aromaticum
EbN1]
Length = 451
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 199/465 (42%), Positives = 288/465 (61%), Gaps = 25/465 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I +AT PGRGG+G++R+SG L + T ++ KPR A ++ F ID+G+
Sbjct: 12 IAALATAPGRGGIGVVRVSGAALAPFARAL---TGREPKPRHAAFTHFVDAVGKPIDEGI 68
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++YF APHS+TGEDVIEL GHGGP++L ++L+ CLE+G RLA PGEF++RAFLN K
Sbjct: 69 LLYFPAPHSFTGEDVIELQGHGGPVVLQLVLARCLELGA----RLAEPGEFSRRAFLNGK 124
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EA+ DLI AST AA+SA+ SLSG FS ++ L D LI+LR L+E + DFP+E+
Sbjct: 125 MDLAQAEAVADLIEASTVVAARSAVRSLSGVFSDEMHRLTDALIDLRMLVEATLDFPDED 184
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
E + N L I+ KL +++++ ++ AL+R+G+NVVL+GQPNVGKSSL N L G
Sbjct: 185 VEFLENAR-ALERLDAIRVKLERVLERARQGALLRSGMNVVLVGQPNVGKSSLLNCLAGD 243
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + +TI I + DTAG +++ + VE++G+ERTW E
Sbjct: 244 ERAIVTDIAGTTRDAVRETIAIEGIPIHVIDTAG-------LRETADPVERLGVERTWRE 296
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANI 367
+ +D+I+ + DAR D I P + I ++NKID G + ++ I
Sbjct: 297 IARADVILRIVDARVGPQPG-DDAIDAALPEGVERITIFNKIDLCGLEPARLQHDDGVVI 355
Query: 368 YLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSE 427
LSA +G++LLR+ LL + LARERH+ +L +A ++ A
Sbjct: 356 QLSAQLALGVDLLRSELLR-VAGWHAHGDDVVLARERHLVALRDALTHVVAA-------- 406
Query: 428 KNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ LEL AE+LR ++ I G+ +++DLL IFS+FCIGK
Sbjct: 407 RSQCGALELFAEELRLAQIRIGEITGEFSSDDLLGVIFSRFCIGK 451
>gi|329118565|ref|ZP_08247269.1| tRNA modification GTPase TrmE [Neisseria bacilliformis ATCC
BAA-1200]
gi|327465300|gb|EGF11581.1| tRNA modification GTPase TrmE [Neisseria bacilliformis ATCC
BAA-1200]
Length = 454
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 210/470 (44%), Positives = 286/470 (60%), Gaps = 28/470 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I +AT PGRGGVG+IR+SGK+L + + + Q PR A Y+ F+ ID GL
Sbjct: 8 IAAVATAPGRGGVGVIRISGKHLLPLAQQISGGKTPQ--PRLALYTDFYDAEKRTIDSGL 65
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++YF AP S+TGEDVIEL GHGGP+++ MLLS CLE+G RLA PGEFTKRAFLNNK
Sbjct: 66 MLYFAAPASFTGEDVIELQGHGGPVVMQMLLSRCLELGA----RLAEPGEFTKRAFLNNK 121
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q E++ DLI+AS++SAA+ A+ SL G FS+ I+ L+D LI LR L+E + DFPEE+
Sbjct: 122 LDLAQAESVADLIDASSQSAARMAVRSLKGAFSQHIHALVDDLITLRMLVEATLDFPEED 181
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L + D +L ++ +L ++ Q ++ A++R G+NVVL+G PNVGKSSL N+L G
Sbjct: 182 IDF-LEEADARGKLENLQGRLKAVLAQAQQGAVLREGMNVVLVGAPNVGKSSLLNALAGD 240
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
D+AIVT IAGTTRD + + I ++ ITDTAG+ D + + VEKIGIER+
Sbjct: 241 DIAIVTDIAGTTRDTVREQITLDGVPVHITDTAGLRDTD-------DTVEKIGIERSGKA 293
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ---KNINYKNNI 364
L +D+ + + D + + I+ P N+ I V NKID SG ++ +
Sbjct: 294 LAQADVALILIDP-AEGLNQKTRDILAALPGNLKKIEVHNKIDLSGGTPEFSDVLCSESG 352
Query: 365 AN--IYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKI 422
A+ I LSA G++LL+ LL I Q +LAR RH +L A L A +
Sbjct: 353 ADTLIRLSAKTGAGLDLLKRALLQQI-GWQGESEGLFLARRRHTAALEAAQTELEHAARC 411
Query: 423 INQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
N +EL+AE LR S I G+ T +DLL IFS+FCIGK
Sbjct: 412 GNH-------QIELLAEHLRLAQAACSEITGEFTADDLLGVIFSRFCIGK 454
>gi|410695540|ref|YP_003626162.1| tRNA modification GTPase trmE [Thiomonas sp. 3As]
gi|294341965|emb|CAZ90394.1| tRNA modification GTPase trmE [Thiomonas sp. 3As]
Length = 472
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 203/485 (41%), Positives = 308/485 (63%), Gaps = 28/485 (5%)
Query: 1 MLTKNS-PIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKN 59
+L +++ PI+ IAT PGRG VGI+R SGK+L ++ + + T + L PR ATY F
Sbjct: 3 LLAQDADPIVAIATAPGRGAVGIVRASGKSLGALAQAI---TGRVLLPRHATYLPFGDGQ 59
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFT 119
+ID+GL ++F APHSYTGEDV+EL HGGP++L +LL+ LE+G S LR+A PGEFT
Sbjct: 60 GGVIDRGLALFFPAPHSYTGEDVLELQIHGGPVVLQLLLARLLELGASSRLRVAQPGEFT 119
Query: 120 KRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEF 179
+RAFLN KLDL Q E++ DLI ASTE+AA+SA +L+G+ S+ + L +L+ LR L+E
Sbjct: 120 RRAFLNGKLDLAQAESVADLIEASTEAAARSATRALAGELSQAVRALAAELVELRLLVEA 179
Query: 180 SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
+ DFPEE+ + L + L +++ L ++ + ++ AL+R GL VVL GQPNVGKSS
Sbjct: 180 TLDFPEEDIDF-LRQAQAQRRLQALQQTLQQVQAKTRQGALLREGLQVVLAGQPNVGKSS 238
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N+L G+++AIVT IAGTTRDK+++TIQI I DTAG+ D + + VE+I
Sbjct: 239 LLNALAGAELAIVTPIAGTTRDKVSQTIQIEGVPLHIVDTAGLRD-------SADAVERI 291
Query: 300 GIERTWVELKNSDIIIYVQD---ARYDKHTDFDKKIIKNFPMNIPVIYVWNKID--YSGH 354
G+ER+W + +D+++++ D + + + +I + P P+++V+NK D +G
Sbjct: 292 GVERSWHAIAGADVVVFLHDLTRLQAPGYAQAEAEIARGLPKGAPLLHVFNKRDCVETGA 351
Query: 355 QKNINYK-------NNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIH 407
Q + + ++++SA+ G+ LR LL L T E ++AR+RH+
Sbjct: 352 QARLLPQVWAQWGVEAGESVWISAATGDGLQELRLKLLQLAGAQPTSEGV-FIARQRHVQ 410
Query: 408 SLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQ 467
+L + +L A+ +I E + + L+L+AE+LR H+ L +I G+ T +DLL IFS
Sbjct: 411 ALEQTGQHLGAALHLI---ELDAQAPLDLLAEELRLSHQALMAITGEYTPDDLLGAIFSS 467
Query: 468 FCIGK 472
FCIGK
Sbjct: 468 FCIGK 472
>gi|397661389|ref|YP_006502089.1| tRNA modification GTPase MnmE [Taylorella equigenitalis ATCC 35865]
gi|394349568|gb|AFN35482.1| tRNA modification GTPase MnmE [Taylorella equigenitalis ATCC 35865]
Length = 443
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 208/465 (44%), Positives = 289/465 (62%), Gaps = 27/465 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT PGRGG+G++R+SG+ L + KPR ATY+ FF + ID GL
Sbjct: 6 IAAIATAPGRGGIGVVRVSGQELAGFARALTNGLDP--KPRIATYTDFFDDDGAAIDNGL 63
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++YF APHS+TGEDV+EL GHGGP+IL+M+L C+E+G RLA PGEFTKRAFLNNK
Sbjct: 64 LLYFPAPHSFTGEDVLELQGHGGPVILNMVLKRCIELGA----RLAEPGEFTKRAFLNNK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q E++ DLI+A++E AA+ A+ SL G FS I+ L+ KLINLR L+E + DFPEE
Sbjct: 120 IDLTQAESVADLIDATSEKAARMALRSLKGVFSDRIHELVSKLINLRMLVEATLDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L D +L +I+K L II Q + ++R GL V LIG PNVGKSSL N+L G
Sbjct: 180 IDF-LEAADALGQLNEIRKLLEGIISQANQGTIMREGLKVALIGMPNVGKSSLLNALSGE 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+VAIVT IAGTTRD + I I+ DTAG +++ + VE+IGI+++
Sbjct: 239 EVAIVTDIAGTTRDVVKNFIHIDGVPIHFMDTAG-------LRETEDLVEQIGIKKSEKT 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANI 367
L+++D+ + +QD R + ++++ P ++ IY+ NKID Q + NN+ I
Sbjct: 292 LQDTDVALILQDPREEISPKL-QEVLSRIPQSVKTIYIQNKIDLIDKQPAQD--NNV--I 346
Query: 368 YLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSE 427
YLSA G++LLR LL+ + + +LAR RH+++L+EA L A +I
Sbjct: 347 YLSAKTGAGLDLLRKALLE-VAGWEGESEGLFLARTRHMNALSEAKSQLEIAKEIAY--- 402
Query: 428 KNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L+L AE LR E L++I G+ T +DLL IFS+FCIGK
Sbjct: 403 ----SGLDLFAEHLRLAQEHLNTITGEFTADDLLGEIFSRFCIGK 443
>gi|54295838|ref|YP_128253.1| tRNA modification GTPase TrmE [Legionella pneumophila str. Lens]
gi|81822283|sp|Q5WSF0.1|MNME_LEGPL RecName: Full=tRNA modification GTPase MnmE
gi|53755670|emb|CAH17173.1| hypothetical protein lpl2929 [Legionella pneumophila str. Lens]
Length = 446
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 206/466 (44%), Positives = 291/466 (62%), Gaps = 26/466 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ IATPPGRGGVGI+R+SG N ++I +C K L+PR AT+ S + NN ++D+GL
Sbjct: 6 IVAIATPPGRGGVGIVRISGPNAYAIA--LCLNGNKALQPRLATFCSLYKGNNEVLDQGL 63
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
V+YFK PHS+TGEDVIE+ HG P++L +L+ + + G RLA PGEF++RAFLN+K
Sbjct: 64 VLYFKGPHSFTGEDVIEIQAHGSPVVLDLLIKESI----AAGARLARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DLIQ EAI DLI AS+++AA+ A+ SL G FSK IN L ++LI LR +E + DFPEE
Sbjct: 120 IDLIQAEAIADLIQASSDTAARMALKSLQGDFSKKINQLNEELIYLRMYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ LN + L +I +L +I Q + L+R GL++V+ G+PN GKS+L N+L G
Sbjct: 180 IDF-LNDGNVSQLLQRIIGRLEEIRSQANQGVLLREGLSLVIAGRPNAGKSTLINNLAGR 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
DVAIVT IAGTTRD + + I ++ I DTAG+ D + + VEK GI+R W E
Sbjct: 239 DVAIVTEIAGTTRDIMREHILLDDIPLHIIDTAGLRDSD-------DLVEKEGIKRAWQE 291
Query: 308 LKNSDIIIYVQDA-RYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIAN 366
LK +D ++ V D D+ ++ P IP+I V+NKID + + K +
Sbjct: 292 LKRADCVLLVVDINNPDQQNSLHNELKLTLPDKIPIITVYNKIDTT----KLTAKCDEHT 347
Query: 367 IYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQS 426
+YLSA G++ L+ + ++ T +LAR RH+ +L+EA A+ + QS
Sbjct: 348 VYLSAKTGEGLDELKKVIKQVVGYQPT--EGQFLARRRHLQALDEAK-----ALLLTGQS 400
Query: 427 EKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ K EL+AEDLR H+ L I G+ T++DLL IFS FCIGK
Sbjct: 401 QLTNHKAGELLAEDLRLAHQTLCEITGEFTSDDLLGKIFSSFCIGK 446
>gi|398810623|ref|ZP_10569437.1| tRNA modification GTPase TrmE [Variovorax sp. CF313]
gi|398082480|gb|EJL73229.1| tRNA modification GTPase TrmE [Variovorax sp. CF313]
Length = 468
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 201/495 (40%), Positives = 299/495 (60%), Gaps = 50/495 (10%)
Query: 1 MLTKNS-PIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKN 59
ML + + PI+ IAT GRG VGI+R+SG L +++ +C + LKPR ATY F +
Sbjct: 1 MLARTTDPIVAIATASGRGAVGIVRVSGARLAPLIDAICGRV---LKPREATYLPFRDAH 57
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLE--------IGKS--IG 109
+D GL ++F +P+S+TGEDV+EL HGG ++L +LL+ CLE G++ G
Sbjct: 58 GEPVDHGLAVHFPSPNSFTGEDVLELQAHGGAVVLQLLLARCLEAAAEPDPVTGRARLPG 117
Query: 110 LRLAMPGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDK 169
LR+A PGEF++RAFLN K+DL Q EAI DLI+ASTE+AA+SA SLSG FS+ I+ L D
Sbjct: 118 LRVAEPGEFSQRAFLNGKVDLAQAEAIADLIDASTEAAARSAGRSLSGAFSREIHTLRDA 177
Query: 170 LINLRTLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVL 229
LI+LR L+E + DFPEE + L K D +L K++ +L + Q+ K+ AL+R G+ VV+
Sbjct: 178 LIHLRMLVEATLDFPEEEIDF-LQKADATGQLAKLQSQLAAVQQRAKQGALLREGIKVVI 236
Query: 230 IGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKI 289
GQPN GKSSL N+L G+++AIV+++AGTTRD +++TIQI+ + DTAG +
Sbjct: 237 AGQPNAGKSSLLNALAGAELAIVSAVAGTTRDVVSQTIQIHGVPLHVADTAG-------L 289
Query: 290 KKNINEVEKIGIERTWVELKNSDIIIYVQD-------ARYDKHTDFDKKIIKNFPMNIPV 342
+++ +EVE+IG+ R W +++++D ++++ D D + + P ++PV
Sbjct: 290 RESSDEVEQIGVARAWGQIESADAVLFLHDLTRAHLADYAAADADILAGLRQKLPASVPV 349
Query: 343 IYVWNKID-----YSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESS 397
+ VWNK D ++GH I LSA +GI LR LL + Q +
Sbjct: 350 LDVWNKQDAAPDAHAGH-----------GIALSAKTGLGIEALREQLLAMA-GWQAVPEG 397
Query: 398 PYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTT 457
YLAR RH+ +L + + + + L+L+AE+LR L+ I G+
Sbjct: 398 VYLARARHVQALAR----VETHLALAASHLAAQAQLLDLLAEELRLAQNALNEITGEFGA 453
Query: 458 NDLLDNIFSQFCIGK 472
+DLL IFS+FCIGK
Sbjct: 454 DDLLGVIFSRFCIGK 468
>gi|253997708|ref|YP_003049772.1| tRNA modification GTPase TrmE [Methylotenera mobilis JLW8]
gi|253984387|gb|ACT49245.1| tRNA modification GTPase TrmE [Methylotenera mobilis JLW8]
Length = 449
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 200/457 (43%), Positives = 284/457 (62%), Gaps = 25/457 (5%)
Query: 16 GRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPH 75
G GG+G++R+SG +I V K PR A Y F + ++ID+G+ I++ PH
Sbjct: 18 GAGGIGVVRVSGPLSQTIAVSVLGHCPK---PRHAAYLDFLQADGDLIDRGIAIFYPNPH 74
Query: 76 SYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVEA 135
SYTGEDV+EL GHGG ++ +LL+ C+ ++G R A PGEFT+RA+LN+K+DL Q EA
Sbjct: 75 SYTGEDVLELQGHGGTALMQILLARCI----ALGARQAEPGEFTRRAYLNDKMDLAQAEA 130
Query: 136 IIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELILNKN 195
+ D+INA+T AAKSA+ SLSG+FS+ IN LL KLI+LR +E DFPEE + I +
Sbjct: 131 VADVINAATIEAAKSAVRSLSGEFSQRINTLLSKLIDLRMYVEACLDFPEEEIDFI-TQG 189
Query: 196 DFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSI 255
++L I ++ + + K+ +L+R G+NVVL+GQPNVGKSSL N L G +VAIVT+I
Sbjct: 190 RVADKLDAIIAEMQAVFVKAKQGSLLREGINVVLVGQPNVGKSSLMNQLAGEEVAIVTAI 249
Query: 256 AGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIII 315
AGTTRD I IQIN + DTAG +++ +EVEK GI RTW + + I +
Sbjct: 250 AGTTRDTIKNAIQINGVPLHVIDTAG-------LRETDDEVEKFGIARTWRATETAHIAL 302
Query: 316 YVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKRI 375
+ DA + T+ +K I+ P IP ++V NKID + I +++ +IY+SA +
Sbjct: 303 LLVDATHGI-TEVEKSILARLPQKIPKVWVHNKIDVTQEPALITEQDHAIHIYISAKTGV 361
Query: 376 GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLE 435
G++LL++ LL L E ++AR RH+ +L E +L A IN + E
Sbjct: 362 GVDLLKHHLLQLAGYQNNAEGV-FMARARHLSALTEVAAHLDLAASQINSA--------E 412
Query: 436 LIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L+AE+LR E LSSI G+ T +DLL IFS+FCIGK
Sbjct: 413 LVAEELRLAQEALSSITGEFTPDDLLGEIFSKFCIGK 449
>gi|307611884|emb|CBX01600.1| hypothetical protein LPW_32871 [Legionella pneumophila 130b]
Length = 446
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 206/466 (44%), Positives = 291/466 (62%), Gaps = 26/466 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ IATPPGRGGVGI+R+SG N ++I +C K L+PR AT+ S + NN ++D+GL
Sbjct: 6 IVAIATPPGRGGVGIVRISGPNAYAIA--LCLNGNKALQPRLATFCSLYKGNNEVLDQGL 63
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
V+YFK PHS+TGEDVIE+ HG P++L +L+ + + G RLA PGEF++RAFLN+K
Sbjct: 64 VLYFKGPHSFTGEDVIEIQAHGSPVVLDLLIKESI----AAGARLARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DLIQ EAI DLI AS+++AA+ A+ SL G FSK IN L ++LI LR +E + DFPEE
Sbjct: 120 IDLIQAEAIADLIQASSDTAARMALKSLQGDFSKKINQLNEELIYLRMYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ LN + L +I +L +I Q + L+R GL++V+ G+PN GKS+L N+L G
Sbjct: 180 IDF-LNDGNVSQLLQRIIGRLEEIRSQANQGVLLREGLSLVIAGRPNAGKSTLINNLAGR 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
DVAIVT IAGTTRD + + I ++ I DTAG+ D + + VEK GI+R W E
Sbjct: 239 DVAIVTEIAGTTRDIMREHILLDDIPLHIIDTAGLRDSD-------DLVEKEGIKRAWQE 291
Query: 308 LKNSDIIIYVQDA-RYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIAN 366
LK +D ++ V D D+ ++ P IP+I V+NKID + + K +
Sbjct: 292 LKRADCVLLVVDINNPDQQDSLLNELRLTLPNKIPIITVYNKIDTT----KLTAKCDEHT 347
Query: 367 IYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQS 426
+YLSA G++ L+ + ++ T +LAR RH+ +L+EA A+ + QS
Sbjct: 348 VYLSAKTGEGLDELKKVIKQVVGYQPT--EGQFLARRRHLQALDEAK-----ALLLTGQS 400
Query: 427 EKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ K EL+AEDLR H+ L I G+ T++DLL IFS FCIGK
Sbjct: 401 QLTNHKAGELLAEDLRLAHQTLCEITGEFTSDDLLGKIFSSFCIGK 446
>gi|399115354|emb|CCG18154.1| tRNA modification GTPase MnmE [Taylorella equigenitalis 14/56]
Length = 443
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 207/465 (44%), Positives = 289/465 (62%), Gaps = 27/465 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT PGRGG+G++R+SG+ L + KPR ATY+ FF + ID GL
Sbjct: 6 IAAIATAPGRGGIGVVRVSGQELAGFARALTNGLDP--KPRIATYTDFFDDDGTAIDNGL 63
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++YF APHS+TGEDV+EL GHGGP+IL+M+L C+E+G RLA PGEFTKRAFLNNK
Sbjct: 64 LLYFPAPHSFTGEDVLELQGHGGPVILNMVLKRCIELGA----RLAEPGEFTKRAFLNNK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q E++ DLI+A++E AA+ A+ SL G FS I+ L+ KLINLR L+E + DFPEE
Sbjct: 120 IDLTQAESVADLIDATSEKAARMALRSLKGVFSDRIHELVSKLINLRMLVEATLDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L D +L +I+K L II Q + ++R GL V LIG PNVGKSSL N+L G
Sbjct: 180 IDF-LEAADALGQLNEIRKLLEGIISQANQGTIMREGLKVALIGMPNVGKSSLLNALSGE 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+VAIVT IAGTTRD + I I+ DTAG +++ + VE+IGI+++
Sbjct: 239 EVAIVTDIAGTTRDVVKNFIHIDGVPIHFMDTAG-------LRETEDLVEQIGIKKSEKT 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANI 367
L+++D+ + +QD R + ++++ P ++ IY+ NKID Q + NN+ I
Sbjct: 292 LQDADVALILQDPREEISHKL-QEVLSRIPQSVKTIYIQNKIDLIDKQPAQD--NNV--I 346
Query: 368 YLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSE 427
YLSA G++LL+ LL+ + + +LAR RH+++L+EA L A +I
Sbjct: 347 YLSAKTGAGLDLLKKALLE-VAGWEGESEGLFLARTRHMNALSEAKSQLEIAKEIAY--- 402
Query: 428 KNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L+L AE LR E L++I G+ T +DLL IFS+FCIGK
Sbjct: 403 ----SGLDLFAEHLRLAQEHLNTITGEFTADDLLGEIFSRFCIGK 443
>gi|397668683|ref|YP_006510220.1| GTPase [Legionella pneumophila subsp. pneumophila]
gi|395132094|emb|CCD10389.1| GTPase [Legionella pneumophila subsp. pneumophila]
Length = 444
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 206/466 (44%), Positives = 291/466 (62%), Gaps = 26/466 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ IATPPGRGGVGI+R+SG N ++I +C K L+PR AT+ S + NN ++D+GL
Sbjct: 4 IVAIATPPGRGGVGIVRISGPNAYAIA--LCLNGNKALQPRLATFCSLYKGNNEVLDQGL 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
V+YFK PHS+TGEDVIE+ HG P++L +L+ + + G RLA PGEF++RAFLN+K
Sbjct: 62 VLYFKGPHSFTGEDVIEIQAHGSPVVLDLLIKESI----AAGARLARPGEFSERAFLNDK 117
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DLIQ EAI DLI AS+++AA+ A+ SL G FSK IN L ++LI LR +E + DFPEE
Sbjct: 118 IDLIQAEAIADLIQASSDTAARMALKSLQGDFSKKINQLNEELIYLRMYVEAAIDFPEEE 177
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ LN + L +I +L +I Q + L+R GL++V+ G+PN GKS+L N+L G
Sbjct: 178 IDF-LNDGNVSQLLQRIIGRLEEIRSQANQGVLLREGLSLVIAGRPNAGKSTLINNLAGR 236
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
DVAIVT IAGTTRD + + I ++ I DTAG+ D + + VEK GI+R W E
Sbjct: 237 DVAIVTEIAGTTRDIMREHILLDDIPLHIIDTAGLRDSD-------DLVEKEGIKRAWQE 289
Query: 308 LKNSDIIIYVQDA-RYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIAN 366
LK +D ++ V D D+ ++ P IP+I V+NKID + + K +
Sbjct: 290 LKRADCVLLVVDINNPDQQNSLLNELRLTLPNKIPIITVYNKIDTT----KLTAKCDEHT 345
Query: 367 IYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQS 426
+YLSA G++ L+ + ++ T +LAR RH+ +L+EA A+ + QS
Sbjct: 346 VYLSAKTGEGLDELKKVIKQVVGYQPT--EGQFLARRRHLQALDEAK-----ALLLTGQS 398
Query: 427 EKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ K EL+AEDLR H+ L I G+ T++DLL IFS FCIGK
Sbjct: 399 QLTNHKAGELLAEDLRLAHQTLCEITGEFTSDDLLGKIFSSFCIGK 444
>gi|52843194|ref|YP_096993.1| tRNA modification GTPase TrmE [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|378778883|ref|YP_005187325.1| GTP binding protein in thiophene and furan oxidation (GTPase)
[Legionella pneumophila subsp. pneumophila ATCC 43290]
gi|81823314|sp|Q5ZR82.1|MNME_LEGPH RecName: Full=tRNA modification GTPase MnmE
gi|52630305|gb|AAU29046.1| GTP binding protein in thiophene and furan oxidation (GTPase)
[Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|364509700|gb|AEW53224.1| GTP binding protein in thiophene and furan oxidation (GTPase)
[Legionella pneumophila subsp. pneumophila ATCC 43290]
Length = 446
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 207/466 (44%), Positives = 290/466 (62%), Gaps = 26/466 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ IATPPGRGGVGI+R+SG N ++I +C K L+PR AT+ S + NN ++D+GL
Sbjct: 6 IVAIATPPGRGGVGIVRISGPNAYAIA--LCLNGNKALQPRLATFCSLYKGNNEVLDQGL 63
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
V+YFK PHS+TGEDVIE+ HG P++L +L+ + + G RLA PGEF++RAFLN+K
Sbjct: 64 VLYFKGPHSFTGEDVIEIQAHGSPVVLDLLIKESI----AAGARLARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DLIQ EAI DLI AS+++AA+ A+ SL G FSK IN L ++LI LR +E + DFPEE
Sbjct: 120 IDLIQAEAIADLIQASSDTAARMALKSLQGDFSKKINQLNEELIYLRMYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ LN + L KI +L I Q + L+R GL++V+ G+PN GKS+L N+L G
Sbjct: 180 IDF-LNDGNVSQLLQKIIGRLEDIRSQANQGVLLREGLSLVIAGRPNAGKSTLINNLAGR 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
DVAIVT IAGTTRD + + I ++ I DTAG+ D + + VEK GI+R W E
Sbjct: 239 DVAIVTEIAGTTRDIMREHILLDDIPLHIIDTAGLRDSD-------DLVEKEGIKRAWQE 291
Query: 308 LKNSDIIIYVQDA-RYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIAN 366
LK +D ++ V D D+ ++ P IP+I V+NKID + + K +
Sbjct: 292 LKRADCVLLVVDINNPDQQNSLLNELRLTLPNKIPIITVYNKIDTT----KLTAKCDEHT 347
Query: 367 IYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQS 426
+YLSA G++ L+ + ++ T +LAR RH+ +L+EA A+ + QS
Sbjct: 348 VYLSAKTGEGLDELKKVIKQVVGYQPT--EGQFLARRRHLQALDEAK-----ALLLTGQS 400
Query: 427 EKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ K EL+AEDLR H+ L I G+ T++DLL IFS FCIGK
Sbjct: 401 QLTNHKAGELLAEDLRLAHQTLCEITGEFTSDDLLGKIFSSFCIGK 446
>gi|148361342|ref|YP_001252549.1| thiophene/furan oxidation GTPase [Legionella pneumophila str.
Corby]
gi|296108683|ref|YP_003620384.1| GTP binding protein in thiophene and furan oxidation (GTPase)
[Legionella pneumophila 2300/99 Alcoy]
gi|205415773|sp|A5IIK3.1|MNME_LEGPC RecName: Full=tRNA modification GTPase MnmE
gi|148283115|gb|ABQ57203.1| GTP binding protein in thiophene and furan oxidation (GTPase)
[Legionella pneumophila str. Corby]
gi|295650585|gb|ADG26432.1| GTP binding protein in thiophene and furan oxidation (GTPase)
[Legionella pneumophila 2300/99 Alcoy]
Length = 446
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 206/466 (44%), Positives = 291/466 (62%), Gaps = 26/466 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ IATPPGRGGVGI+R+SG N ++I +C K L+PR AT+ S + NN ++D+GL
Sbjct: 6 IVAIATPPGRGGVGIVRISGPNAYAIA--LCLNGNKALQPRLATFCSLYKGNNEVLDQGL 63
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
V+YFK PHS+TGEDVIE+ HG P++L +L+ + + G RLA PGEF++RAFLN+K
Sbjct: 64 VLYFKGPHSFTGEDVIEIQAHGSPVVLDLLIKESI----AAGARLARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DLIQ EAI DLI AS+++AA+ A+ SL G FSK IN L ++LI LR +E + DFPEE
Sbjct: 120 IDLIQAEAIADLIQASSDTAARMALKSLQGDFSKKINQLNEELIYLRMYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ LN + L +I +L +I Q + L+R GL++V+ G+PN GKS+L N+L G
Sbjct: 180 IDF-LNDGNVSQLLQRIIGRLEEIRSQANQGVLLREGLSLVIAGRPNAGKSTLINNLAGR 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
DVAIVT IAGTTRD + + I ++ I DTAG+ D + + VEK GI+R W E
Sbjct: 239 DVAIVTEIAGTTRDIMREHILLDDIPLHIIDTAGLRDSD-------DLVEKEGIKRAWQE 291
Query: 308 LKNSDIIIYVQDA-RYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIAN 366
LK +D ++ V D D+ ++ P IP+I V+NKID + + K +
Sbjct: 292 LKRADCVLLVVDINNPDQQNSLLNELRLTLPNKIPIITVYNKIDTT----KLTAKCDEHT 347
Query: 367 IYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQS 426
+YLSA G++ L+ + ++ T +LAR RH+ +L+EA A+ + QS
Sbjct: 348 VYLSAKTGEGLDELKKVIKQVVGYQPT--EGQFLARRRHLQALDEAK-----ALLLTGQS 400
Query: 427 EKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ K EL+AEDLR H+ L I G+ T++DLL IFS FCIGK
Sbjct: 401 QLTNHKAGELLAEDLRLAHQTLCEITGEFTSDDLLGKIFSSFCIGK 446
>gi|332288923|ref|YP_004419775.1| tRNA modification GTPase TrmE [Gallibacterium anatis UMN179]
gi|330431819|gb|AEC16878.1| tRNA modification GTPase TrmE [Gallibacterium anatis UMN179]
Length = 454
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 206/475 (43%), Positives = 295/475 (62%), Gaps = 24/475 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M+ K + I+ ATPPGRGGVGI+R+SG + + V KT LKPRFA Y F +
Sbjct: 1 MIEKET-IVAQATPPGRGGVGILRVSGPLSEQVAKEVLGKT---LKPRFANYLPFKDIDG 56
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+++D+G+ ++FKAP+S+TGEDV+EL GHGG +IL +LL L+I G+RLA PGEF++
Sbjct: 57 SVLDQGIALFFKAPNSFTGEDVLELQGHGGQVILDLLLKRILQIK---GIRLARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
+AFLN+K+DL Q EAI DLI+AS+E AA+SA+ SL G+FS ++ L+D+LI LRT +E +
Sbjct: 114 QAFLNDKIDLAQAEAIADLIDASSEQAARSALKSLQGEFSTKVHQLVDELIYLRTYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFP+E + L L +I K+ ++ Q K+ +L+R G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPDEEIDF-LADGKIEAHLNQIIAKVAEVQSQAKQGSLLREGMKVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G D AIVT IAGTTRD + + I ++ I DTAG ++ +EVE+IG
Sbjct: 233 LNALAGRDAAIVTDIAGTTRDVLREHIHLDGMPLHIIDTAG-------LRTATDEVERIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
IER W E+ +D ++++ D+ T +K + + P +IPV + NK D SG +
Sbjct: 286 IERAWQEIDQADRVLFMLDSTTTDETLPEKIWPEFMSRLPPSIPVTIIRNKADISGEAEG 345
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
I +N I LSA + GI LL+ L + I QT+ +LAR RH+ +L +A +L
Sbjct: 346 IRTENGYTTITLSAKTQQGIQLLKAHLKESI-GYQTVTEGGFLARRRHLEALEQAAQHLQ 404
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ Q EL+AE+L+ LS I G+ T++DLL NIFS FCIGK
Sbjct: 405 QGHIQLTQFYAG-----ELLAEELKMAQNALSEITGQFTSDDLLGNIFSSFCIGK 454
>gi|319779149|ref|YP_004130062.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Taylorella
equigenitalis MCE9]
gi|317109173|gb|ADU91919.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Taylorella
equigenitalis MCE9]
Length = 443
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 206/465 (44%), Positives = 289/465 (62%), Gaps = 27/465 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT PGRGG+G++R+SG+ L + KPR ATY+ FF + ID GL
Sbjct: 6 IAAIATAPGRGGIGVVRVSGQELAGFARALTNGLDP--KPRIATYTDFFDDDGAAIDNGL 63
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++YF APHS+TGEDV+EL GHGGP+IL+M+L C+E+G RLA PGEFTKRAFLNNK
Sbjct: 64 LLYFPAPHSFTGEDVLELQGHGGPVILNMVLKRCIELGA----RLAEPGEFTKRAFLNNK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q E++ DLI+A++E AA+ A+ SL G FS I+ L+ KLINLR L+E + DFPEE
Sbjct: 120 IDLTQAESVADLIDATSEKAARMALRSLKGVFSDRIHELVSKLINLRMLVEATLDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L D +L +I+K L II Q + ++R GL V LIG PNVGKSSL N+L G
Sbjct: 180 LDF-LEAADALGQLNEIRKLLEGIISQANQGTIMREGLKVALIGMPNVGKSSLLNALSGE 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+VAIVT IAGTTRD + I I+ DTAG +++ + VE+IGI+++
Sbjct: 239 EVAIVTDIAGTTRDVVKNFIHIDGVPIHFMDTAG-------LRETEDLVEQIGIKKSEKT 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANI 367
L+++D+ + +QD R + ++++ P ++ IY+ NKID Q + NN+ I
Sbjct: 292 LQDADVALILQDPREEISHKL-QEVLSRIPQSVKTIYIQNKIDLIDKQPAQD--NNV--I 346
Query: 368 YLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSE 427
YLSA G++LL+ LL+ + + +LAR RH+++L+EA L A +I
Sbjct: 347 YLSAKTGAGLDLLKKALLE-VAGWEGESEGLFLARTRHMNALSEAKSQLEIAKEIAY--- 402
Query: 428 KNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L+L AE LR E L++I G+ T +DLL IF++FCIGK
Sbjct: 403 ----SGLDLFAEHLRLAQEHLNTITGEFTADDLLGEIFTRFCIGK 443
>gi|365091748|ref|ZP_09329103.1| tRNA modification GTPase TrmE [Acidovorax sp. NO-1]
gi|363416059|gb|EHL23183.1| tRNA modification GTPase TrmE [Acidovorax sp. NO-1]
Length = 474
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 216/490 (44%), Positives = 301/490 (61%), Gaps = 34/490 (6%)
Query: 1 MLTKNS-PIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKN 59
ML ++ PI+ IAT PGRG VGI+R+SG+ L ++V+ +C + LKPR ATY F
Sbjct: 1 MLARHQDPIVAIATAPGRGAVGIVRVSGRGLDALVQALCGRA---LKPREATYLPFRDAQ 57
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSI----------G 109
ID+GL ++F PHSYTGEDV+EL HGGP++L +LL+ CLE G + G
Sbjct: 58 GEAIDQGLALFFPGPHSYTGEDVLELQAHGGPVVLQLLLARCLEAGAAADTATGQPRLRG 117
Query: 110 LRLAMPGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDK 169
LR+A PGEFT+RAFLN+K+DL Q EAI DLI+AST +AA+SA SLSG FS I+ L D
Sbjct: 118 LRVAQPGEFTERAFLNDKIDLAQAEAIADLIDASTSAAARSASRSLSGAFSAEIHGLRDA 177
Query: 170 LINLRTLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVL 229
LI+LR L+E + DFPEE + L K D +L +++ L ++Q+ ++ AL+R G+ VV+
Sbjct: 178 LIHLRMLVEATLDFPEEEIDF-LRKADARGQLSNLQQTLAAVMQRTRQGALLREGIKVVI 236
Query: 230 IGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKI 289
GQPN GKSSL N+L G+++AIVT IAGTTRDK+ +TIQI I DTAG+ D
Sbjct: 237 AGQPNAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHIIDTAGLRD----- 291
Query: 290 KKNINEVEKIGIERTWVELKNSDIIIYVQD-ARYD--KHTDFDKKII----KNFPMNIPV 342
+ +EVE+IGI R W E+ +D ++++ D R D ++ D I + P NIPV
Sbjct: 292 --SSDEVERIGIARAWDEIAGADAVLFLHDLERMDAPEYIAGDAVIASAMGQKMPQNIPV 349
Query: 343 IYVWNKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLAR 402
I VWNK+D + ++ + LSA G++ LR LL + Q+ Y AR
Sbjct: 350 IDVWNKLDKAPGATAPAVESTRPGVRLSARTGEGLDALRRLLL-DVAGWQSAPEGLYTAR 408
Query: 403 ERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLD 462
RH+ +L +L A ++ L+L+AE+LR L++I G+ T++DLL
Sbjct: 409 ARHVQALEAVGVHLQEAADQLHAQ----GPALDLLAEELRLAQTALNAITGEFTSDDLLG 464
Query: 463 NIFSQFCIGK 472
IFS FCIGK
Sbjct: 465 VIFSSFCIGK 474
>gi|52424535|ref|YP_087672.1| tRNA modification GTPase TrmE [Mannheimia succiniciproducens
MBEL55E]
gi|81387495|sp|Q65VC3.1|MNME_MANSM RecName: Full=tRNA modification GTPase MnmE
gi|52306587|gb|AAU37087.1| ThdF protein [Mannheimia succiniciproducens MBEL55E]
Length = 454
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 207/477 (43%), Positives = 293/477 (61%), Gaps = 28/477 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M+TK + I+ ATP GRGGVGI+R+SG + + V K +LKPR A Y F ++
Sbjct: 1 MMTKET-IVAQATPIGRGGVGILRVSGPLATEVAKAVVDK---ELKPRMANYLPFKDEDG 56
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
I+D+G+ +YFK+P+S+TGEDV+E GHGG ++L +LL L++ G+RLA PGEF++
Sbjct: 57 TILDQGIALYFKSPNSFTGEDVVEFQGHGGQVVLDLLLKRILQVK---GVRLARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
+AFLN+KLDL Q EAI DLINAS+E AA+SA+ SL G+FSK IN L+D +I LRT +E +
Sbjct: 114 QAFLNDKLDLAQAEAIADLINASSEQAARSALKSLQGEFSKKINQLVDSVIYLRTYVEAA 173
Query: 181 FDFPEENQELILNK--NDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKS 238
DFP+E + + + N+LI +L K+ + K+ +++R G+ VV+ G+PN GKS
Sbjct: 174 IDFPDEEIDFLADGKIEGHLNDLI---GQLDKVRSEAKQGSILREGMKVVIAGRPNAGKS 230
Query: 239 SLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEK 298
SL N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D +EVE+
Sbjct: 231 SLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT-------DEVER 283
Query: 299 IGIERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQ 355
IGI R W E++ +D +I + D+ D D+ + + P NIPV V NK D SG +
Sbjct: 284 IGITRAWNEIEQADRVILMLDSTDPDSKDLDQAKAEFLSKLPGNIPVTIVRNKSDLSGEK 343
Query: 356 KNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYY 415
++I + I LSA + G++LLR L + QT +LAR RH+ +L A +
Sbjct: 344 ESIEEQEGFTVIRLSAQTQQGVSLLREHLKQSM-GYQTGTEGGFLARRRHLEALEHAAEH 402
Query: 416 LSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L + Q EL+AE+LR + L I GK T++DLL NIFS FCIGK
Sbjct: 403 LQIGRVQLTQFHAG-----ELLAEELRIVQDYLGEITGKFTSDDLLGNIFSSFCIGK 454
>gi|54299006|ref|YP_125375.1| tRNA modification GTPase TrmE [Legionella pneumophila str. Paris]
gi|81822476|sp|Q5X0M3.1|MNME_LEGPA RecName: Full=tRNA modification GTPase MnmE
gi|53752791|emb|CAH14226.1| hypothetical protein lpp3073 [Legionella pneumophila str. Paris]
Length = 446
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 204/466 (43%), Positives = 290/466 (62%), Gaps = 26/466 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ IATPPGRGGVGI+R+SG ++I +C K L+PR AT+ S + NN ++D+GL
Sbjct: 6 IVAIATPPGRGGVGIVRISGPKAYAIA--LCLNGNKALQPRLATFCSLYKGNNEVLDQGL 63
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
V+YFK PHS+TGED+IE+ HG P++L +L+ + + G RLA PGEF++RAFLN+K
Sbjct: 64 VLYFKGPHSFTGEDIIEIQAHGSPVVLDLLIKESI----AAGARLARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DLIQ EAI DLI AS+++AA+ A+ SL G FSK IN L ++LI LR +E + DFPEE
Sbjct: 120 IDLIQAEAIADLIQASSDTAARMALKSLQGDFSKKINQLNEELIYLRMYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ LN + L +I +L +I Q + L+R GL++V+ G+PN GKS+L N+L G
Sbjct: 180 IDF-LNDGNVSQLLQRIIGRLEEIRSQANQGVLLREGLSLVIAGRPNAGKSTLINNLAGR 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
DVAIVT IAGTTRD + + I ++ I DTAG+ D + + VEK GI+R W E
Sbjct: 239 DVAIVTEIAGTTRDIMREHILLDDIPLHIIDTAGLRDSD-------DLVEKEGIKRAWQE 291
Query: 308 LKNSDIIIYVQDA-RYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIAN 366
LK +D ++ V D D+ ++ P IP+I V+NKID + + K +
Sbjct: 292 LKRADCVLLVVDINNRDQQNSLLNELRLTLPNKIPIITVYNKIDTT----KLTAKCDEHT 347
Query: 367 IYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQS 426
+YLSA G++ L+ + ++ T +LAR RH+ +L+EA A+ + QS
Sbjct: 348 VYLSAKTGEGLDELKKVIKQVVGYQPT--EGQFLARRRHLQALDEAK-----ALLLTGQS 400
Query: 427 EKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ K EL+AEDLR H+ L I G+ T++DLL IFS FCIGK
Sbjct: 401 QLTNHKAGELLAEDLRLAHQTLCEITGEFTSDDLLGKIFSSFCIGK 446
>gi|451823459|ref|YP_007459733.1| tRNA modification GTPase [Candidatus Kinetoplastibacterium
desouzaii TCC079E]
gi|451776259|gb|AGF47300.1| tRNA modification GTPase [Candidatus Kinetoplastibacterium
desouzaii TCC079E]
Length = 446
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 213/472 (45%), Positives = 309/472 (65%), Gaps = 33/472 (6%)
Query: 5 NSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIID 64
+SPI I+T G+G +GI+R+SGK+L I+ + L R Y F KNN IID
Sbjct: 4 DSPIAAISTAEGKGAIGIVRISGKDLSLIM---LNLFGRILNNRHVYYLPFKNKNNYIID 60
Query: 65 KGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFL 124
KG+V + K+P SYTGEDV+EL GHGG I++H +LS CL+ G +RLA PGEFTKRAFL
Sbjct: 61 KGIVFFCKSPESYTGEDVLELQGHGGNIVIHEILSMCLDAGAENKIRLANPGEFTKRAFL 120
Query: 125 NNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFP 184
N ++DL Q EAI DLI+A + AAKSAM+SLSG+ SK I+ + ++LI R +IE + DFP
Sbjct: 121 NGRIDLAQAEAISDLIDAVSIEAAKSAMLSLSGEPSKRIHEITEELIKTRVIIEANIDFP 180
Query: 185 EENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSL 244
EE+ + + K L +IKK LL I+ KK +I+NG+NVV+ G+PNVGKSS+ N+L
Sbjct: 181 EEDI-IFIQKKQILESLEQIKKNLLLFIETTKKGIIIKNGINVVIAGEPNVGKSSILNAL 239
Query: 245 VGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304
++AIVT IAGTTRDKI+ I IN L I DTAGI + N +++EKIGI ++
Sbjct: 240 SEEEIAIVTPIAGTTRDKISNKITINGILINIIDTAGIRESN-------DQIEKIGIRKS 292
Query: 305 WVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
E+ +D+I++++D + D +IK FP N PV+ ++NKID N I
Sbjct: 293 LEEISKADLILHIKDISNQNNND---NLIK-FPSNTPVLEIFNKIDLV---------NKI 339
Query: 365 AN----IYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
AN +++SA+++IGI+ ++N +L+++ +E + ++ARERH+ SLN++ +L ++
Sbjct: 340 ANNDNILFVSATEKIGIDSIKNKILEIV-GLDKLEETRWIARERHLFSLNQSLEHLKTSL 398
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ E ++LIAE+LR H++L I G TT ++LDNIFS FCIGK
Sbjct: 399 DYLSEQ----ELRIDLIAEELRLSHKELCYITGHFTTENMLDNIFSNFCIGK 446
>gi|397665622|ref|YP_006507160.1| GTPase [Legionella pneumophila subsp. pneumophila]
gi|395129033|emb|CCD07256.1| GTPase [Legionella pneumophila subsp. pneumophila]
Length = 446
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 206/466 (44%), Positives = 291/466 (62%), Gaps = 26/466 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ IATPPGRGGVGI+R+SG N ++I +C K L+PR AT+ S + NN ++D+GL
Sbjct: 6 IVAIATPPGRGGVGIVRISGPNAYAIA--LCLNGNKALQPRLATFCSLYKGNNEVLDQGL 63
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
V+YFK PHS+TGEDVIE+ HG P++L +L+ + + G RLA PGEF++RAFLN+K
Sbjct: 64 VLYFKGPHSFTGEDVIEIQAHGSPVVLDLLIKESI----AAGARLARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DLIQ EAI DLI AS+++AA+ A+ SL G FSK IN L ++LI LR +E + DFPEE
Sbjct: 120 IDLIQAEAIADLILASSDTAARMALKSLQGDFSKKINQLNEELIYLRMYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ LN + L +I +L +I Q + L+R GL++V+ G+PN GKS+L N+L G
Sbjct: 180 IDF-LNDGNVSQLLQRIIGRLEEIRSQANQGVLLREGLSLVIAGRPNAGKSTLINNLAGR 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
DVAIVT IAGTTRD + + I ++ I DTAG+ D + + VEK GI+R W E
Sbjct: 239 DVAIVTEIAGTTRDIMREHILLDDIPLHIIDTAGLRDSD-------DLVEKEGIKRAWQE 291
Query: 308 LKNSDIIIYVQDA-RYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIAN 366
LK +D ++ V D D+ ++ P IP+I V+NKID + + K +
Sbjct: 292 LKRADCVLLVVDINNPDQQNSLLNELRLTLPNKIPIITVFNKIDTT----KLTAKCDEHT 347
Query: 367 IYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQS 426
+YLSA G++ L+ + ++ T +LAR RH+ +L+EA A+ + QS
Sbjct: 348 VYLSAKTGEGLDELKKVIKQVVGYQPT--EGQFLARRRHLQALDEAK-----ALLLTGQS 400
Query: 427 EKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ K EL+AEDLR H+ L I G+ T++DLL IFS FCIGK
Sbjct: 401 QLTNHKAGELLAEDLRLAHQTLCEITGEFTSDDLLGKIFSSFCIGK 446
>gi|387772171|ref|ZP_10128129.1| tRNA modification GTPase TrmE [Haemophilus parahaemolyticus HK385]
gi|386907692|gb|EIJ72396.1| tRNA modification GTPase TrmE [Haemophilus parahaemolyticus HK385]
Length = 499
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 202/474 (42%), Positives = 291/474 (61%), Gaps = 25/474 (5%)
Query: 3 TKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKT-KKQLKPRFATYSSFFCKNNN 61
T I+ ATP GRGGVGI+R+SG + +V ++ K+LKPR A Y F +
Sbjct: 47 TMKETIVAQATPIGRGGVGILRISG----PLANVVAQEVLGKELKPRLANYLPFKDSDGT 102
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++FKAP+S+TGEDV+EL GHGG +IL +LL LEI G+R+A GEF+++
Sbjct: 103 VLDQGIALFFKAPNSFTGEDVLELQGHGGQVILDILLKRILEIK---GVRIARAGEFSEQ 159
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+A++E AA+SA+ SL G+FS IN L+D +I LRT +E +
Sbjct: 160 AFLNDKLDLAQAEAIADLIDATSEQAARSALKSLQGEFSTKINRLVDSVIYLRTYVEAAI 219
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L L I +L ++ Q+ K+ A++R G+ VV+ G+PN GKSSL
Sbjct: 220 DFPDEEIDF-LADGKIEGHLNDIISQLSQVRQEAKQGAILREGMKVVIAGRPNAGKSSLL 278
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 279 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 331
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKK---IIKNFPMNIPVIYVWNKIDYSGHQKNI 358
+R W E++ +D ++ + D+ K DF + + P N+P+ + NK+D SG + +
Sbjct: 332 QRAWNEIEQADHVLLMIDSTEQKADDFKTEWADFLAKLPQNMPITVIRNKVDLSGETEGL 391
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
KN I LSA ++G++LLR+ L + T E +LAR RH+ +L A +L
Sbjct: 392 EEKNGFTLIRLSAQTKVGVDLLRDHLKKSMGYQSTTEGG-FLARRRHLQALESAAEHLEM 450
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ Q EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 451 GHVQLTQFHAG-----ELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 499
>gi|257095986|ref|YP_003169627.1| tRNA modification GTPase TrmE [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
gi|257048510|gb|ACV37698.1| tRNA modification GTPase TrmE [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
Length = 458
Score = 370 bits (949), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 195/460 (42%), Positives = 290/460 (63%), Gaps = 30/460 (6%)
Query: 15 PGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKP--RFATYSSFFCKNNNIIDKGLVIYFK 72
PGRGG+G+IR++G +L E + + +P R AT F ++ +ID GL++YF
Sbjct: 27 PGRGGIGVIRVAGASLLEFAEALSGR-----RPLARRATLCEFRAADHVVIDTGLLLYFP 81
Query: 73 APHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQ 132
APHS+TG+DV+ELHGHGGP+++ MLL CLE+G RLA PGEFT+RA+LN KLDL Q
Sbjct: 82 APHSFTGDDVLELHGHGGPVVMQMLLVRCLELGA----RLADPGEFTRRAYLNGKLDLAQ 137
Query: 133 VEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELIL 192
EA+IDLI+A+T +AA+SA+ SL G+FS + +LLD+LI LR L+E + DFP+E+ + L
Sbjct: 138 AEAVIDLIDAATAAAARSAVRSLQGEFSGEVRVLLDQLIELRALVEATLDFPDEDVDF-L 196
Query: 193 NKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIV 252
D F L +++++L ++ ++ ++ L++ GL+VVL+G+PNVGKSSL N L G +VAIV
Sbjct: 197 EAADAFGRLDRLEQRLTRVFERARQGRLLQGGLHVVLVGKPNVGKSSLLNRLAGDEVAIV 256
Query: 253 TSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSD 312
T + GTTRD + T+Q+ + DTAG+ D +++E++GIERTW E++ +D
Sbjct: 257 TPLPGTTRDLVRSTLQVEGIPLHVIDTAGLRDTE-------DQIERLGIERTWREIERAD 309
Query: 313 IIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSAS 372
+++ + DAR D ++ I+ FP + ++V+NKID + + + I LSA
Sbjct: 310 VVVLLVDARTGV-GDAERVILAKFPAKLARVFVYNKIDLTSRAAERREEADGVAIMLSAR 368
Query: 373 KRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEK 432
G LLR LL I E ++ARERH+H+L E + A + +
Sbjct: 369 SGEGSELLRQELLR-IAGWHPAEDV-FIARERHLHALAETRQNIDAARRQL--------P 418
Query: 433 NLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+LEL AE+LR LS I G+ + +DLL IF +FCIGK
Sbjct: 419 SLELFAEELRLAQLALSRITGEYSADDLLGEIFGRFCIGK 458
>gi|113460278|ref|YP_718336.1| tRNA modification GTPase TrmE [Haemophilus somnus 129PT]
gi|122945114|sp|Q0I0Z2.1|MNME_HAES1 RecName: Full=tRNA modification GTPase MnmE
gi|112822321|gb|ABI24410.1| tRNA modification GTPase trmE [Haemophilus somnus 129PT]
Length = 452
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 204/468 (43%), Positives = 287/468 (61%), Gaps = 24/468 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ ATP GRGGVGI+R+SG + E V KT L PR A Y F + ++D+G+
Sbjct: 6 IVAQATPIGRGGVGILRVSGPLAQQVAEQVLGKT---LTPRMANYLPFKDSDGTVLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFKAP+S+TGEDV+EL GHGG I++ +LL L+I G+RLA PGEF+++AFLN+K
Sbjct: 63 ALYFKAPNSFTGEDVLELQGHGGQIVMDLLLKRILQID---GIRLARPGEFSEQAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+E AA+SA+ SL G+FS IN L+D +I LRT +E + DFP+E
Sbjct: 120 LDLAQAEAIADLIEASSEQAARSALKSLQGEFSNKINELVDSVIYLRTYVEAAIDFPDEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L L +I KL K+ + K+ A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LADGKIETHLREIIAKLAKVKNEAKQGAILREGMKVVIAGRPNAGKSSLLNTLAGR 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D +EVEKIGI R W E
Sbjct: 239 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT-------DEVEKIGIRRAWDE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFD---KKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D I+ + D+ + + D + + P +IP+ V NK D SG + ++ +N +
Sbjct: 292 IEQADRILLILDS-TENQVELDLVQSEFMAKLPPHIPLTIVRNKADLSGEAEVLDEQNGL 350
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
A I LSA + G++LLR L + Q +LAR RH+ +L +A+ +L + +
Sbjct: 351 AVISLSAKTQKGVDLLRQHLKQSM-GYQVCTEGGFLARRRHLEALEQADIHLQAGLIQLT 409
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 410 EFYAG-----ELVAEELRIAQHHLSEITGQFTSDDLLGNIFSSFCIGK 452
>gi|350426786|ref|XP_003494542.1| PREDICTED: tRNA modification GTPase MnmE-like [Bombus impatiens]
Length = 484
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 200/466 (42%), Positives = 286/466 (61%), Gaps = 23/466 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ ATPPGRGGVGI+R+SG + ++ + + K K PR A Y F+ ++ I+D+G+
Sbjct: 6 IVAQATPPGRGGVGILRISGSHTQTVAKAILGKVPK---PRQAEYLPFYQQDGTILDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F PHS+TGEDV+EL GHGGP+IL +LL L++G +R+A PGEF++RAFLN+K
Sbjct: 63 ALFFPNPHSFTGEDVLELQGHGGPVILDLLLKRVLQVGD---VRIAKPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AAKSAM+SL G FSK IN L+++LINLR +E + DFPEE
Sbjct: 120 LDLAQAEAIADLIDASSEQAAKSAMLSLQGNFSKKINELVNELINLRIFVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ ++L K+ L + Q+ K+ L+R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LSDGKIESQLNKVMNNLQSVRQEAKQGTLLREGMKVVIAGRPNAGKSSLLNALAGH 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
D AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI R W E
Sbjct: 239 DAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIARAWQE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D + + +K + I+ P IP+ + NK D +G +
Sbjct: 292 IEQADRVLFMVDGTTTQESCPEKLWPEFIQRLPKGIPITVIRNKADMTGEALGATEVDGY 351
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G+ +LR L I T + E +LAR RH+ +L++A +L +
Sbjct: 352 PLIKLSARTGAGVEVLREHLKASIGFTSSTEGG-FLARRRHLQALDQAAKHLEQG----H 406
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCI 470
Q F EL+AE+LR E LS I G T++DLL IF FCI
Sbjct: 407 QQLVVFYAG-ELLAEELRLAQEALSQITGAFTSDDLLGKIFGSFCI 451
>gi|82703888|ref|YP_413454.1| tRNA modification GTPase TrmE [Nitrosospira multiformis ATCC 25196]
gi|123543757|sp|Q2Y5A9.1|MNME_NITMU RecName: Full=tRNA modification GTPase MnmE
gi|82411953|gb|ABB76062.1| tRNA modification GTPase trmE [Nitrosospira multiformis ATCC 25196]
Length = 452
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 195/473 (41%), Positives = 291/473 (61%), Gaps = 23/473 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
+T++ I IATPPGRGG+G++R+SG+NL S+ V + PR A+ + F +N+
Sbjct: 1 MTRSDVIAAIATPPGRGGIGVVRVSGRNLQSLALKVAGCVPE---PRRASLTRFRDENDR 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+ID+G+ +YF AP SYTGE+V+EL GHGGP ++++LL+SCL S G RLA PGEFT R
Sbjct: 58 VIDQGIALYFPAPQSYTGEEVLELQGHGGPAVMNLLLASCL----SAGARLAQPGEFTLR 113
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLNNKLDL Q E++ DLI+ASTE AA+ A+ SL G+FS I+ + L +LR L+E S
Sbjct: 114 AFLNNKLDLAQAESVADLIDASTEEAARCAIRSLQGEFSNAIHTSVQALTDLRMLVEASL 173
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DF EE E I + F L I+++L ++ ++ +L+R G+ + L+GQPNVGKSSL
Sbjct: 174 DFSEEEIEFISGRELEFR-LEHIRQQLEQVFSAARQGSLLREGIWIALVGQPNVGKSSLL 232
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N L G +VA+VT + GTTRD I + I+I + DTAG +++ + +EK+G+
Sbjct: 233 NRLAGEEVALVTEVPGTTRDVIRQVIEIEGVPMHLLDTAG-------LRETEDAIEKMGM 285
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDY--SGHQKNIN 359
RT + + I++ + D+R T D+ I+ + P + +I V NK D S ++
Sbjct: 286 ARTRSTIDKASIVLLLVDSRVGI-TPEDQAILASLPPGLRLIVVHNKTDLLESPPNSTVS 344
Query: 360 YKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCA 419
A+I++SA GI L+ LL++I + ++AR+RH+ +L A +L A
Sbjct: 345 TATATADIWVSAKTGAGIGSLQQGLLEMIGWQPSTGEGAFMARQRHLSALTAARTHLEAA 404
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ N ++ +EL AE+LR LSSI G+ + +DLL IFS+FCIGK
Sbjct: 405 CALANSLDQ-----VELFAEELRLAQLALSSITGEFSADDLLGEIFSRFCIGK 452
>gi|296313895|ref|ZP_06863836.1| tRNA modification GTPase TrmE [Neisseria polysaccharea ATCC 43768]
gi|296839424|gb|EFH23362.1| tRNA modification GTPase TrmE [Neisseria polysaccharea ATCC 43768]
Length = 448
Score = 369 bits (946), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 207/473 (43%), Positives = 285/473 (60%), Gaps = 27/473 (5%)
Query: 2 LTKNSPIIG-IATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
++ N P I +AT PGRGGVG+IR+SGKNL + E +C KT K PR ATY+ F +
Sbjct: 1 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAEALCGKTPK---PRVATYADFTDADG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID GL+++F AP S+TGEDVIEL GHGGP+++ MLL+ CLE+G RLA PGEFTK
Sbjct: 58 QAIDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLELGA----RLAEPGEFTK 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q E + DLI+AS+ SAA+ A+ SL G FS+ I+ L++ LI LR L+E +
Sbjct: 114 RAFLNDKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEAT 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE+ + L D +L +++ + ++ ++ A++R GLNVVL+G PNVGKSSL
Sbjct: 174 LDFPEEDIDF-LEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G +VAIVT IAGTTRD + + I I+ I DTAG +++ + VE+IG
Sbjct: 233 LNALAGDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAG-------LRETDDVVERIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IER+ + +D+ + + D R + D + I+ P + I + +K D H
Sbjct: 286 IERSRKAVSEADVALVLVDPR-EGVNDKTRAILDALPSELKRIEIHSKSDLHAHAAGGFG 344
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP-YLARERHIHSLNEANYYLSCA 419
I LSA G++ L+ TLL E ES +LAR RH+++L A LS A
Sbjct: 345 TGAETVIALSAKTGDGLDALKRTLLR--EAGWQGESEGLFLARTRHVNALKAAQEELSLA 402
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
N +EL+AE LR I G+ T +DLL IFS+FCIGK
Sbjct: 403 ALCGNH-------QIELLAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448
>gi|205829220|sp|Q31DJ0.2|MNME_THICR RecName: Full=tRNA modification GTPase MnmE
Length = 451
Score = 368 bits (945), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 194/471 (41%), Positives = 289/471 (61%), Gaps = 22/471 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
+ N I IAT PGRGGVGI+R+SG I E V K K PR+A Y F
Sbjct: 3 FSTNDTIAAIATAPGRGGVGIVRVSGIKAAEIAEHVLGKCPK---PRYAHYGPFLGAEGQ 59
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F PHS+TGE+V+EL GHGGP+IL LL +++G RLA PGEF+K+
Sbjct: 60 VLDQGIALFFPNPHSFTGENVLELQGHGGPVILQWLLERVVQLGA----RLAEPGEFSKQ 115
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS++ AA+SA+ SL G FS +N L+++LI LR +E +
Sbjct: 116 AFLNDKLDLAQAEAIADLIDASSQQAARSALRSLQGDFSNQVNELVEQLIQLRIYVEAAI 175
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFPEE + L+ +L I ++L +++ ++ L+R G++VV++G+PN GKSSL
Sbjct: 176 DFPEEEIDF-LSDGKVAGQLQHILEQLHRVLASAQQGVLLREGMSVVILGRPNAGKSSLL 234
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + IQI+ + DTAG +++ + VE+IGI
Sbjct: 235 NALSGRESAIVTDIAGTTRDIVKEEIQIDGMPLHVLDTAG-------LREATDAVEQIGI 287
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYK 361
+R W ++ +D I+ + A H + D+ I++ P +IPV + NKID ++
Sbjct: 288 QRAWAAIEEADRILVMVQANEAIHPE-DQAILEKMPSHIPVTLIHNKIDLIEKSPELSEN 346
Query: 362 NNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIK 421
+ I+LSA +G++LL+ L + QT E ++AR+RH+ +L A +++
Sbjct: 347 DGETEIWLSAKHHLGLDLLKQHLKTEMGYAQT-EEGVFMARKRHLEALETALHFVETG-- 403
Query: 422 IINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q ++F EL+AEDLR + LS I G+ T++DLL IF+ FCIGK
Sbjct: 404 --QQQLEHFAAG-ELLAEDLRQAQQALSEITGQFTSDDLLGRIFTSFCIGK 451
>gi|78486532|ref|YP_392457.1| tRNA modification GTPase TrmE [Thiomicrospira crunogena XCL-2]
gi|78364818|gb|ABB42783.1| tRNA modification GTPase trmE [Thiomicrospira crunogena XCL-2]
Length = 475
Score = 367 bits (943), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 194/471 (41%), Positives = 289/471 (61%), Gaps = 22/471 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
+ N I IAT PGRGGVGI+R+SG I E V K K PR+A Y F
Sbjct: 27 FSTNDTIAAIATAPGRGGVGIVRVSGIKAAEIAEHVLGKCPK---PRYAHYGPFLGAEGQ 83
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F PHS+TGE+V+EL GHGGP+IL LL +++G RLA PGEF+K+
Sbjct: 84 VLDQGIALFFPNPHSFTGENVLELQGHGGPVILQWLLERVVQLGA----RLAEPGEFSKQ 139
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS++ AA+SA+ SL G FS +N L+++LI LR +E +
Sbjct: 140 AFLNDKLDLAQAEAIADLIDASSQQAARSALRSLQGDFSNQVNELVEQLIQLRIYVEAAI 199
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFPEE + L+ +L I ++L +++ ++ L+R G++VV++G+PN GKSSL
Sbjct: 200 DFPEEEIDF-LSDGKVAGQLQHILEQLHRVLASAQQGVLLREGMSVVILGRPNAGKSSLL 258
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + IQI+ + DTAG +++ + VE+IGI
Sbjct: 259 NALSGRESAIVTDIAGTTRDIVKEEIQIDGMPLHVLDTAG-------LREATDAVEQIGI 311
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYK 361
+R W ++ +D I+ + A H + D+ I++ P +IPV + NKID ++
Sbjct: 312 QRAWAAIEEADRILVMVQANEAIHPE-DQAILEKMPSHIPVTLIHNKIDLIEKSPELSEN 370
Query: 362 NNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIK 421
+ I+LSA +G++LL+ L + QT E ++AR+RH+ +L A +++
Sbjct: 371 DGETEIWLSAKHHLGLDLLKQHLKTEMGYAQT-EEGVFMARKRHLEALETALHFVETG-- 427
Query: 422 IINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q ++F EL+AEDLR + LS I G+ T++DLL IF+ FCIGK
Sbjct: 428 --QQQLEHFAAG-ELLAEDLRQAQQALSEITGQFTSDDLLGRIFTSFCIGK 475
>gi|300725383|ref|YP_003714722.1| GTPase [Xenorhabdus nematophila ATCC 19061]
gi|297631939|emb|CBJ92664.1| GTPase involved in tRNA modification and in thiophene and furan
oxidation [Xenorhabdus nematophila ATCC 19061]
Length = 454
Score = 367 bits (943), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 194/468 (41%), Positives = 292/468 (62%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ ATPPGRGGVGI+R+SG+ + E+V K K PR+A Y F + +++D+G+
Sbjct: 7 IVAQATPPGRGGVGILRISGRKAAEVAEVVLGKLPK---PRYADYLPFRDMDGSVLDQGI 63
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
V+YF P+S+TGEDV+EL GHGGP+IL +LL L I G+R+A PGEF++RAFLN+K
Sbjct: 64 VLYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIS---GVRIANPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AA+SAM SL G FS ++ +++ L NLR +E + DFP+E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSAMNSLQGTFSHQVHQMVETLTNLRIYVEAAIDFPDEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L ++ +L + Q ++ +L+R G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDF-LSDGKIEAKLDEVIAELDNVRSQARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ + DTAG +++ +EVE+IGIER W E
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHVIDTAG-------LREASDEVERIGIERAWQE 292
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D+ + + + + P ++PV + NK D +G ++ +
Sbjct: 293 IEQADRVLFMVDSTTTDAIEPAQIWPEFMAKLPASLPVTVIRNKTDMTGEATGVSDVSGY 352
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
+ I LSA + GI+LLR+ L + + IE +LAR RH+ +LN A +L
Sbjct: 353 SLIRLSAREGKGIDLLRDHLKETMGFNSNIEGG-FLARRRHLQALNTAADHLQE-----G 406
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ F ++ EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 407 HQQLVFARSGELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|386816610|ref|ZP_10103828.1| tRNA modification GTPase trmE [Thiothrix nivea DSM 5205]
gi|386421186|gb|EIJ35021.1| tRNA modification GTPase trmE [Thiothrix nivea DSM 5205]
Length = 446
Score = 367 bits (941), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 204/471 (43%), Positives = 285/471 (60%), Gaps = 30/471 (6%)
Query: 5 NSP--IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNI 62
N+P I +ATPPGRGGVGIIR+SG+ + E+ PR A++ F +
Sbjct: 3 NNPDTIAAVATPPGRGGVGIIRISGQR---VPELAASILGSLPPPRKASHRLFRAADGTP 59
Query: 63 IDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRA 122
+D G+ +YF APHS+TGEDV+EL GHGG ++L MLL C+E+G RLA PGEF++RA
Sbjct: 60 LDDGIALYFPAPHSFTGEDVLELQGHGGMVVLDMLLKRCVELGA----RLARPGEFSERA 115
Query: 123 FLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFD 182
FLN+KLDL Q EAI DLI++ +E AA+SA+ SL G+FS+ +N LL LI LR +E + D
Sbjct: 116 FLNDKLDLAQAEAIADLIDSGSEQAARSALRSLQGEFSEAVNTLLTGLIELRVYVEAALD 175
Query: 183 FPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFN 242
FP+E + L N L IK++L I Q+ + +L+R+G+++V++G+PN GKSSL N
Sbjct: 176 FPDEEIDF-LADNAVTRRLETIKQQLHTIFQKAHQGSLLRDGMHLVIVGRPNAGKSSLLN 234
Query: 243 SLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302
+L G + AIVT IAGTTRD + + I ++ I DTAG+ D + + VEKIGIE
Sbjct: 235 ALAGQETAIVTDIAGTTRDVLRERINLDGMPLHIVDTAGLRDSD-------DPVEKIGIE 287
Query: 303 RTWVELKNSD-IIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYK 361
R W E++ +D I++ V D R+D+ + D I+ P ++P I V NKID SG Q +
Sbjct: 288 RAWQEIERADLILLLVDDTRHDEPENAD--ILARLPPHLPRITVHNKIDLSGKQPGKQGE 345
Query: 362 NNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIK 421
+IY+SA GI LR L + E + ++AR RH+ +L E A++
Sbjct: 346 ----HIYISAKHDQGIAALRAELKTRMGYQGEAEDT-FIARRRHLQALEETQQ----AVQ 396
Query: 422 IINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ F EL+AE+LR L I GK T +DLL IFS FCIGK
Sbjct: 397 RAEFQLRGFNAG-ELMAEELRLAQNALGQITGKFTPDDLLGEIFSSFCIGK 446
>gi|302880137|ref|YP_003848701.1| tRNA modification GTPase TrmE [Gallionella capsiferriformans ES-2]
gi|302582926|gb|ADL56937.1| tRNA modification GTPase TrmE [Gallionella capsiferriformans ES-2]
Length = 442
Score = 367 bits (941), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 202/458 (44%), Positives = 285/458 (62%), Gaps = 32/458 (6%)
Query: 16 GRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPH 75
GRGGVG++R+SG L SI E + + R ATY+ F + +ID+G+ +YF APH
Sbjct: 16 GRGGVGVVRISGSGLGSIAEAILGRLPV---ARHATYTDFKDETGEVIDQGIALYFPAPH 72
Query: 76 SYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVEA 135
SYTGEDV+EL GHGG +LH+LL CL +G+RLA GEFT+RAFLN+K+DL Q E+
Sbjct: 73 SYTGEDVLELQGHGGAAVLHLLLQRCL----GLGVRLAEAGEFTRRAFLNDKIDLAQAES 128
Query: 136 IIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI-LNK 194
+ DLI A+T AA+SAM SL G FS IN L+++L LR L+E DFPEE+ E++ +
Sbjct: 129 VADLIEATTTEAARSAMRSLHGDFSAAINGLVEELTLLRMLVEAMLDFPEEDIEVVDTSH 188
Query: 195 NDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTS 254
D E KIK KL + + K+ +L+R G ++ L+G+PNVGKSSL N L G +VA+V+
Sbjct: 189 RDRLLE--KIKTKLAQTLATAKQGSLLREGAHIALVGRPNVGKSSLLNRLAGEEVALVSD 246
Query: 255 IAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDII 314
+ GTTRD I + IQI I DTAG ++++ +EVE +G+ RT + +D+I
Sbjct: 247 VPGTTRDVIRQAIQIRGVPLHIMDTAG-------LRESGDEVENMGMARTHQTVGRADLI 299
Query: 315 IYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKR 374
+ + DA ++ D II FP+ IP + V+NK D Q + +N A IY+SA
Sbjct: 300 LMLLDA-AQGCSEGDLAIIAGFPVEIPRLQVYNKADLL--QGAL---SNDAGIYISAKSG 353
Query: 375 IGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNL 434
+GI+ LR +L I E ++ARERH+ +LN+AN +L A ++++
Sbjct: 354 LGIDTLREQILKQI-GWHNQEGGTFIARERHLIALNQANIHLQQAEQLLDHP-------- 404
Query: 435 ELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
EL AE+LR + LSSI GK + +DLL IFS+FCIGK
Sbjct: 405 ELFAEELRLTQQALSSITGKFSADDLLGEIFSRFCIGK 442
>gi|254804213|ref|YP_003082434.1| tRNA modification GTPase TrmE [Neisseria meningitidis alpha14]
gi|254667755|emb|CBA03677.1| putative tRNA modification GTPase [Neisseria meningitidis alpha14]
Length = 448
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 206/473 (43%), Positives = 285/473 (60%), Gaps = 27/473 (5%)
Query: 2 LTKNSPIIG-IATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
++ N P I +AT PGRGGVG+IR+SGKNL + + +C KT K PR ATY+ F +
Sbjct: 1 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKTPK---PRTATYADFTDADG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID GL+++F AP S+TGEDVIEL GHGGP+++ MLL+ CLE+G RLA PGEFTK
Sbjct: 58 QAIDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLELGA----RLAEPGEFTK 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q E + DLI+AS+ SAA+ A+ SL G FS+ I+ L++ LI LR L+E +
Sbjct: 114 RAFLNDKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEAT 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE+ + L D +L +++ + ++ ++ A++R GLNVVL+G PNVGKSSL
Sbjct: 174 LDFPEEDIDF-LEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G +VAIVT IAGTTRD + + I I+ I DTAG +++ + VE+IG
Sbjct: 233 LNALAGDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAG-------LRETDDVVERIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IER+ + +D+ + + D R + D + I+ P + I + +K D H
Sbjct: 286 IERSRKAVSEADVALVLVDPR-EGVNDKTRAILDALPPELKRIEIHSKSDLHAHAAGGFG 344
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP-YLARERHIHSLNEANYYLSCA 419
I LSA G++ L+ TLL E ES +LAR RH+++L A LS A
Sbjct: 345 TGAETVIALSAKTGDGLDALKRTLLR--EAGWQGESEGLFLARTRHVNALKAAQEELSLA 402
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
N +EL+AE LR I G+ T +DLL IFS+FCIGK
Sbjct: 403 ALCGNH-------QIELLAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448
>gi|340363476|ref|ZP_08685809.1| tRNA modification GTPase TrmE [Neisseria macacae ATCC 33926]
gi|339885741|gb|EGQ75438.1| tRNA modification GTPase TrmE [Neisseria macacae ATCC 33926]
Length = 454
Score = 366 bits (939), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 205/478 (42%), Positives = 288/478 (60%), Gaps = 30/478 (6%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M I IAT PGRGGVG+IRLSGKNL + + + K KPR A Y+ F +
Sbjct: 1 MSASQPTIAAIATAPGRGGVGVIRLSGKNLLPLAQTLSGG--KTPKPRTALYTDFLGGDG 58
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+D G+++YF AP S+TGEDVIEL GHGGP+++ MLLS CLE+G R+A PGEFTK
Sbjct: 59 QPLDNGILLYFAAPASFTGEDVIELQGHGGPVVMDMLLSRCLELGA----RMAEPGEFTK 114
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLNNKLDL Q E++ DLI+AS++SAA+ A+ SL G FS+ I+ L+D LI LR L+E +
Sbjct: 115 RAFLNNKLDLAQAESVADLIDASSKSAARMALRSLKGAFSRHIHELVDDLITLRMLVEAT 174
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE+ + L D +L ++ +L ++ ++ A++R G+NVVL+G PNVGKSSL
Sbjct: 175 LDFPEEDIDF-LEAADARGKLQALQGRLKTVLASAEQGAILREGMNVVLVGAPNVGKSSL 233
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G D+AIVT IAGTTRD + + I ++ I DTAG +++ + VE+IG
Sbjct: 234 LNALAGDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAG-------LRETDDVVEQIG 286
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IER+ + +D+ + + D R + + I+ + P + I + NK D +G +
Sbjct: 287 IERSRKAVSEADVALILIDPREGVNAKT-QAILNSLPEGLKKIEIHNKADLTGEPVAVR- 344
Query: 361 KNNIAN------IYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ +A I LSA G++LL++ LL + Q S +LAR RH+++L+EA
Sbjct: 345 SDGLAQTGADSVISLSAKTGAGLDLLKHALLQEV-GWQGESESLFLARSRHLNALHEAET 403
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L A N +EL AE LR S I G+ T +DLL IFS+FCIGK
Sbjct: 404 ELENAALCDN-------NQIELFAEHLRLAQNACSEITGEFTADDLLGVIFSRFCIGK 454
>gi|218767437|ref|YP_002341949.1| tRNA modification GTPase TrmE [Neisseria meningitidis Z2491]
gi|385337285|ref|YP_005891158.1| tRNA modification GTPase TrmE [Neisseria meningitidis WUE 2594]
gi|433476417|ref|ZP_20433749.1| tRNA modification GTPase TrmE [Neisseria meningitidis 88050]
gi|433480485|ref|ZP_20437766.1| tRNA modification GTPase TrmE [Neisseria meningitidis 63041]
gi|433514307|ref|ZP_20471090.1| tRNA modification GTPase TrmE [Neisseria meningitidis 63049]
gi|433516518|ref|ZP_20473278.1| tRNA modification GTPase TrmE [Neisseria meningitidis 2004090]
gi|433518509|ref|ZP_20475245.1| tRNA modification GTPase TrmE [Neisseria meningitidis 96023]
gi|433520672|ref|ZP_20477382.1| tRNA modification GTPase TrmE [Neisseria meningitidis 65014]
gi|433523772|ref|ZP_20480437.1| tRNA modification GTPase TrmE [Neisseria meningitidis 97020]
gi|433529090|ref|ZP_20485696.1| tRNA modification GTPase TrmE [Neisseria meningitidis NM3652]
gi|433531264|ref|ZP_20487842.1| tRNA modification GTPase TrmE [Neisseria meningitidis NM3642]
gi|433532736|ref|ZP_20489300.1| tRNA modification GTPase TrmE [Neisseria meningitidis 2007056]
gi|433535447|ref|ZP_20491973.1| tRNA modification GTPase TrmE [Neisseria meningitidis 2001212]
gi|433541864|ref|ZP_20498303.1| tRNA modification GTPase TrmE [Neisseria meningitidis 63006]
gi|14195278|sp|Q9JWB7.1|MNME_NEIMA RecName: Full=tRNA modification GTPase MnmE
gi|121051445|emb|CAM07738.1| probable thiophene and furan oxidation protein [Neisseria
meningitidis Z2491]
gi|319409699|emb|CBY90002.1| tRNA modification GTPase TrmE [Neisseria meningitidis WUE 2594]
gi|432207862|gb|ELK63849.1| tRNA modification GTPase TrmE [Neisseria meningitidis 88050]
gi|432213762|gb|ELK69672.1| tRNA modification GTPase TrmE [Neisseria meningitidis 63041]
gi|432245795|gb|ELL01260.1| tRNA modification GTPase TrmE [Neisseria meningitidis 63049]
gi|432250936|gb|ELL06312.1| tRNA modification GTPase TrmE [Neisseria meningitidis 2004090]
gi|432251289|gb|ELL06659.1| tRNA modification GTPase TrmE [Neisseria meningitidis 96023]
gi|432251863|gb|ELL07225.1| tRNA modification GTPase TrmE [Neisseria meningitidis 65014]
gi|432260671|gb|ELL15929.1| tRNA modification GTPase TrmE [Neisseria meningitidis 97020]
gi|432263714|gb|ELL18927.1| tRNA modification GTPase TrmE [Neisseria meningitidis NM3652]
gi|432264141|gb|ELL19349.1| tRNA modification GTPase TrmE [Neisseria meningitidis NM3642]
gi|432267252|gb|ELL22432.1| tRNA modification GTPase TrmE [Neisseria meningitidis 2007056]
gi|432269394|gb|ELL24554.1| tRNA modification GTPase TrmE [Neisseria meningitidis 2001212]
gi|432275293|gb|ELL30368.1| tRNA modification GTPase TrmE [Neisseria meningitidis 63006]
Length = 448
Score = 366 bits (939), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 205/473 (43%), Positives = 286/473 (60%), Gaps = 27/473 (5%)
Query: 2 LTKNSPIIG-IATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
++ N P I +AT PGRGGVG+IR+SGKNL + + +C KT K PR ATY+ F ++
Sbjct: 1 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKTPK---PRVATYADFTDEDG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID GL+++F AP S+TGEDVIEL GHGGP+++ MLL+ CLE+G RLA PGEFTK
Sbjct: 58 QAIDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLELGA----RLAEPGEFTK 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q E + DLI+AS+ SAA+ A+ SL G FS+ I+ L++ LI LR L+E +
Sbjct: 114 RAFLNDKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEAT 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE+ + L D +L +++ + ++ ++ A++R GLNVVL+G PNVGKSSL
Sbjct: 174 LDFPEEDIDF-LEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G +VAIVT IAGTTRD + + I I+ I DTAG +++ + VE+IG
Sbjct: 233 LNALAGDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAG-------LRETDDVVERIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IER+ + +D+ + + D R + + + I+ P+ + I + +K D H
Sbjct: 286 IERSRKAVSEADVALVLVDPR-EGLNEKTRAILDALPLELKRIEIHSKSDLHAHAAGGFG 344
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP-YLARERHIHSLNEANYYLSCA 419
I LSA G++ L+ TLL E ES +LAR RH+++L A LS A
Sbjct: 345 TGAETVIALSAKTGDGLDALKRTLLR--EAGWQGESEGLFLARTRHVNALKAAQEELSLA 402
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
N +EL AE LR I G+ T +DLL IFS+FCIGK
Sbjct: 403 ALCGNH-------QIELFAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448
>gi|421863586|ref|ZP_16295281.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309378889|emb|CBX22476.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 448
Score = 366 bits (939), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 206/473 (43%), Positives = 284/473 (60%), Gaps = 27/473 (5%)
Query: 2 LTKNSPIIG-IATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
++ N P I +AT PGRGGVG+IR+SGKNL + + +C KT K PR ATY+ F +
Sbjct: 1 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKTPK---PRVATYADFTDADG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID GL+++F AP S+TGEDVIEL GHGGP+++ MLL+ CLE+G RLA PGEFTK
Sbjct: 58 QAIDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLELGA----RLAEPGEFTK 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q E + DLI+AS+ SAA+ A+ SL G FS+ I+ L++ LI LR L+E +
Sbjct: 114 RAFLNDKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEAT 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE+ + L D +L +++ + ++ ++ A++R GLNVVL+G PNVGKSSL
Sbjct: 174 LDFPEEDIDF-LEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G +VAIVT IAGTTRD + + I I+ I DTAG +++ + VE+IG
Sbjct: 233 LNALAGDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAG-------LRETDDVVERIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IER+ + +D+ + + D R + D + I+ P + I + +K D H
Sbjct: 286 IERSRKAVSEADVALVLVDPR-EGVNDKTRAILDALPSELKRIEIHSKSDLHAHAAGGFG 344
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP-YLARERHIHSLNEANYYLSCA 419
I LSA G++ L+ TLL E ES +LAR RH+++L A LS A
Sbjct: 345 TGAETVIALSAKTGDGLDALKRTLLR--EAGWQGESEGLFLARTRHVNALKAAQEELSLA 402
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
N +EL AE LR I G+ T +DLL IFS+FCIGK
Sbjct: 403 ALCGNH-------QIELFAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448
>gi|170718319|ref|YP_001785331.1| tRNA modification GTPase TrmE [Haemophilus somnus 2336]
gi|205829154|sp|B0URU2.1|MNME_HAES2 RecName: Full=tRNA modification GTPase MnmE
gi|168826448|gb|ACA31819.1| tRNA modification GTPase TrmE [Haemophilus somnus 2336]
Length = 452
Score = 366 bits (939), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 203/468 (43%), Positives = 287/468 (61%), Gaps = 24/468 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ ATP GRGGVGI+R+SG + E V KT L PR A Y F + +++D+G+
Sbjct: 6 IVAQATPIGRGGVGILRVSGPLAQQVAEQVLGKT---LTPRMANYLPFKDSDGSVLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFKAP+S+TGE+V+EL GHGG I++ +LL L+I G+RLA PGEF+++AFLN+K
Sbjct: 63 ALYFKAPNSFTGENVLELQGHGGQIVMDLLLKRILQID---GIRLARPGEFSEQAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+E AA+SA+ SL G+FS IN L+D +I LRT +E + DFP+E
Sbjct: 120 LDLAQAEAIADLIEASSEQAARSALKSLQGEFSNKINELVDSVIYLRTYVEAAIDFPDEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L L +I KL K+ + K+ A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LADGKIETHLREIIAKLAKVKNEAKQGAILREGMKVVIAGRPNAGKSSLLNTLAGR 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D +EVEKIGI R W E
Sbjct: 239 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT-------DEVEKIGIRRAWDE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFD---KKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D I+ + D+ + + D + + P +IP+ V NK D SG + +N +N +
Sbjct: 292 IEQADRILLILDS-TENQVELDLVRSEFMAKLPPHIPLTIVRNKADLSGEAEVLNEQNGL 350
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA + G++LLR L + Q +LAR RH+ +L +A+ +L + +
Sbjct: 351 TVISLSAKTQKGVDLLRQHLKQSM-GYQVCTEGGFLARRRHLEALEQADIHLQAGLIQLT 409
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 410 EFYAG-----ELVAEELRIVQHHLSEITGQFTSDDLLGNIFSSFCIGK 452
>gi|421564083|ref|ZP_16009894.1| tRNA modification GTPase TrmE [Neisseria meningitidis NM2795]
gi|421907915|ref|ZP_16337779.1| tRNA modification GTPase mnmE [Neisseria meningitidis alpha704]
gi|393290966|emb|CCI73790.1| tRNA modification GTPase mnmE [Neisseria meningitidis alpha704]
gi|402339302|gb|EJU74519.1| tRNA modification GTPase TrmE [Neisseria meningitidis NM2795]
Length = 448
Score = 365 bits (938), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 206/473 (43%), Positives = 284/473 (60%), Gaps = 27/473 (5%)
Query: 2 LTKNSPIIG-IATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
++ N P I +AT PGRGGVG+IR+SGKNL + + +C KT K PR ATY+ F +
Sbjct: 1 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKTPK---PRVATYADFTDADG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID GL+++F AP S+TGEDVIEL GHGGP+++ MLL+ CLE+G RLA PGEFTK
Sbjct: 58 QAIDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLELGA----RLAEPGEFTK 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q E + DLI+AS+ SAA+ A+ SL G FS+ I+ L++ LI LR L+E +
Sbjct: 114 RAFLNDKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEAT 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE+ + L D +L +++ + ++ ++ A++R GLNVVL+G PNVGKSSL
Sbjct: 174 LDFPEEDIDF-LEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G +VAIVT IAGTTRD + + I I+ I DTAG +++ + VE+IG
Sbjct: 233 LNALAGDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAG-------LRETDDVVERIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IER+ + +D+ + + D R + D + I+ P + I + +K D H
Sbjct: 286 IERSRKAVSEADVALVLVDPR-EGVNDKTRAILDALPPELKRIEIHSKSDLHAHAAGGFG 344
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP-YLARERHIHSLNEANYYLSCA 419
I LSA G++ L+ TLL E ES +LAR RH+++L A LS A
Sbjct: 345 TGAETVIALSAKTGDGLDALKRTLLR--EAGWQGESEGLFLARTRHVNALKAAQEELSLA 402
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
N +EL AE LR I G+ T +DLL IFS+FCIGK
Sbjct: 403 ALCGNH-------QIELFAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448
>gi|348031115|ref|YP_004873801.1| tRNA modification GTPase TrmE [Glaciecola nitratireducens FR1064]
gi|347948458|gb|AEP31808.1| tRNA modification GTPase TrmE [Glaciecola nitratireducens FR1064]
Length = 455
Score = 365 bits (938), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 199/470 (42%), Positives = 302/470 (64%), Gaps = 27/470 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGI+R+SG E+ + + R A Y F +++N+ID+G+
Sbjct: 8 IVAQATAPGRGGVGIVRVSGPKAK---EVALRLLGECPAVRQARYLPFKDQHSNVIDQGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF+APHS+TGEDV+EL GHGG +++ +LL +C + KS +RLA PGEF+++AFLN+K
Sbjct: 65 ALYFQAPHSFTGEDVLELQGHGGQVVMELLLDAC--VAKS-DVRLARPGEFSEQAFLNDK 121
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLINA+++ AAKSA+ SL G+FS+ IN+L++++I+LR +E + DFPEE
Sbjct: 122 LDLTQAEAIADLINATSKQAAKSALRSLQGEFSQQINMLVEQVIHLRMYVEAAIDFPEEE 181
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L+KI ++L KI Q K+ +L+R+G++VV++G+PN GKSSL N+L G
Sbjct: 182 IDF-LSDGKVQGDLLKICEQLDKIKHQAKQGSLLRDGMSVVIVGRPNAGKSSLLNALSGK 240
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG ++++ +EVEKIGIER W E
Sbjct: 241 ESAIVTEIAGTTRDVLKEHIHIDGMPLHIIDTAG-------LRESTDEVEKIGIERAWSE 293
Query: 308 LKNSDIIIYVQDA---RYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D I+++ D+ + D+ D P N + + NK D SG ++ +
Sbjct: 294 IEKADRILFMVDSNEEKADQPGDIWPDFYARLPANANITVIRNKCDESGETIGLSSTSTY 353
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
+ +SA +++GIN LR+ L + Q E +AR+RHI +L +A+ + IN
Sbjct: 354 PVLRISAKQQLGINELRDHLKQCMGFEQAGEDQ-VIARQRHIIALQQADEH-------IN 405
Query: 425 QSEKNFEKNL--ELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E N+ EL+AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 406 QGKAQLEDNMAGELLAEELRIAQQYLNEITGEFSSDDLLGKIFSSFCIGK 455
>gi|121635645|ref|YP_975890.1| tRNA modification GTPase TrmE [Neisseria meningitidis FAM18]
gi|385855996|ref|YP_005902509.1| tRNA modification GTPase TrmE [Neisseria meningitidis M01-240355]
gi|385856465|ref|YP_005902977.1| tRNA modification GTPase TrmE [Neisseria meningitidis NZ-05/33]
gi|416179954|ref|ZP_11611256.1| tRNA modification GTPase TrmE [Neisseria meningitidis M6190]
gi|416189247|ref|ZP_11615209.1| tRNA modification GTPase TrmE [Neisseria meningitidis M0579]
gi|416193511|ref|ZP_11617177.1| tRNA modification GTPase TrmE [Neisseria meningitidis ES14902]
gi|416208582|ref|ZP_11621130.1| tRNA modification GTPase TrmE [Neisseria meningitidis 961-5945]
gi|418289136|ref|ZP_12901517.1| tRNA modification GTPase TrmE [Neisseria meningitidis NM233]
gi|418291390|ref|ZP_12903404.1| tRNA modification GTPase TrmE [Neisseria meningitidis NM220]
gi|421559954|ref|ZP_16005820.1| tRNA modification GTPase TrmE [Neisseria meningitidis 92045]
gi|433467983|ref|ZP_20425431.1| tRNA modification GTPase TrmE [Neisseria meningitidis 87255]
gi|433493418|ref|ZP_20450501.1| tRNA modification GTPase TrmE [Neisseria meningitidis NM586]
gi|433495471|ref|ZP_20452531.1| tRNA modification GTPase TrmE [Neisseria meningitidis NM762]
gi|433497541|ref|ZP_20454568.1| tRNA modification GTPase TrmE [Neisseria meningitidis M7089]
gi|433499587|ref|ZP_20456591.1| tRNA modification GTPase TrmE [Neisseria meningitidis M7124]
gi|433501653|ref|ZP_20458633.1| tRNA modification GTPase TrmE [Neisseria meningitidis NM174]
gi|433503774|ref|ZP_20460728.1| tRNA modification GTPase TrmE [Neisseria meningitidis NM126]
gi|433522679|ref|ZP_20479361.1| tRNA modification GTPase TrmE [Neisseria meningitidis 61103]
gi|205415783|sp|A1KW66.1|MNME_NEIMF RecName: Full=tRNA modification GTPase MnmE
gi|120867351|emb|CAM11122.1| probable thiophene and furan oxidation protein [Neisseria
meningitidis FAM18]
gi|325131396|gb|EGC54105.1| tRNA modification GTPase TrmE [Neisseria meningitidis M6190]
gi|325135580|gb|EGC58198.1| tRNA modification GTPase TrmE [Neisseria meningitidis M0579]
gi|325137477|gb|EGC60063.1| tRNA modification GTPase TrmE [Neisseria meningitidis ES14902]
gi|325141474|gb|EGC63948.1| tRNA modification GTPase TrmE [Neisseria meningitidis 961-5945]
gi|325204937|gb|ADZ00391.1| tRNA modification GTPase TrmE [Neisseria meningitidis M01-240355]
gi|325207354|gb|ADZ02806.1| tRNA modification GTPase TrmE [Neisseria meningitidis NZ-05/33]
gi|372199908|gb|EHP14067.1| tRNA modification GTPase TrmE [Neisseria meningitidis NM220]
gi|372200253|gb|EHP14359.1| tRNA modification GTPase TrmE [Neisseria meningitidis NM233]
gi|402334277|gb|EJU69568.1| tRNA modification GTPase TrmE [Neisseria meningitidis 92045]
gi|432201178|gb|ELK57262.1| tRNA modification GTPase TrmE [Neisseria meningitidis 87255]
gi|432225963|gb|ELK81698.1| tRNA modification GTPase TrmE [Neisseria meningitidis NM586]
gi|432227851|gb|ELK83556.1| tRNA modification GTPase TrmE [Neisseria meningitidis NM762]
gi|432232146|gb|ELK87800.1| tRNA modification GTPase TrmE [Neisseria meningitidis M7089]
gi|432232657|gb|ELK88294.1| tRNA modification GTPase TrmE [Neisseria meningitidis M7124]
gi|432233152|gb|ELK88785.1| tRNA modification GTPase TrmE [Neisseria meningitidis NM174]
gi|432238401|gb|ELK93968.1| tRNA modification GTPase TrmE [Neisseria meningitidis NM126]
gi|432257643|gb|ELL12940.1| tRNA modification GTPase TrmE [Neisseria meningitidis 61103]
Length = 448
Score = 365 bits (938), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 205/472 (43%), Positives = 282/472 (59%), Gaps = 25/472 (5%)
Query: 2 LTKNSPIIG-IATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
++ N P I +AT PGRGGVG+IR+SGKNL + E +C KT K PR ATY+ F +
Sbjct: 1 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAEALCGKTPK---PRVATYADFTDADG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID GL+++F AP S+TGEDVIEL GHGGP+++ MLL+ CLE+G RLA PGEFTK
Sbjct: 58 QAIDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLELGA----RLAEPGEFTK 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q E + DLI+AS+ SAA+ A+ SL G FS+ I+ L++ LI LR L+E +
Sbjct: 114 RAFLNDKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEAT 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE+ + L D +L +++ + ++ ++ A++R GLNVVL+G PNVGKSSL
Sbjct: 174 LDFPEEDIDF-LEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G +VAIVT IAGTTRD + + I I+ I DTAG +++ + VE+IG
Sbjct: 233 LNALAGDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAG-------LRETDDVVERIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IER+ + +D+ + + D R + D + I+ P + I + +K D H
Sbjct: 286 IERSRKAVSEADVALVLVDPR-EGVNDKTRAILDALPPELKRIEIHSKSDLHAHAAGGFG 344
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
I LSA G++ L+ TLL Q +LAR RH+++L A LS A
Sbjct: 345 TGAETVIALSAKTGDGLDALKRTLLREA-GWQGEGEGLFLARTRHVNALKAAQEELSLAA 403
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
N +EL AE LR I G+ T +DLL IFS+FCIGK
Sbjct: 404 LCGNH-------QIELFAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448
>gi|294671265|ref|ZP_06736117.1| hypothetical protein NEIELOOT_02974 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291306992|gb|EFE48235.1| hypothetical protein NEIELOOT_02974 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 454
Score = 365 bits (937), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 205/478 (42%), Positives = 288/478 (60%), Gaps = 30/478 (6%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M I IAT PGRGGVG+IRLSGKNL + + + K KPR A Y+ F +
Sbjct: 1 MSATQPTIAAIATAPGRGGVGVIRLSGKNLLPLAQTLSGG--KTPKPRTALYTDFLGGDG 58
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID G+++YF AP S+TGEDVIEL GHGGP+++ MLLS CLE+G R+A PGEFTK
Sbjct: 59 QPIDNGILLYFAAPASFTGEDVIELQGHGGPVVMDMLLSRCLELGA----RMAEPGEFTK 114
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLNNKLDL Q E++ DLI+AS++SAA+ A+ SL G FS+ I+ L+D LI LR L+E +
Sbjct: 115 RAFLNNKLDLAQAESVADLIDASSKSAARMALRSLKGAFSQHIHELVDDLITLRMLVEAT 174
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE+ + L D +L ++ +L ++ ++ A++R G+NVVL+G PNVGKSSL
Sbjct: 175 LDFPEEDIDF-LEAADARGKLQALQGRLKTVLASAEQGAILREGMNVVLVGAPNVGKSSL 233
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G D+AIVT IAGTTRD + + I ++ I DTAG +++ + VE+IG
Sbjct: 234 LNALAGDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAG-------LRETDDVVEQIG 286
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IER+ + +D+ + + D R + + I+ + P + I + NK D +G +
Sbjct: 287 IERSRKAVSEADVALILIDPREGVNAKT-QAILNSLPAGLKKIEIHNKADLTGEPVAVR- 344
Query: 361 KNNIAN------IYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ +A I LSA G++LL++ LL + Q S +LAR RH+++L++A
Sbjct: 345 SDGLAQTGADTVISLSAKTGAGLDLLKHALLQEV-GWQGESESLFLARSRHLNALHKAEA 403
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L A N +EL AE LR S I G+ T +DLL IFS+FCIGK
Sbjct: 404 ELENAALCDN-------NQIELFAEHLRLAQNACSEITGEFTADDLLGVIFSRFCIGK 454
>gi|416184992|ref|ZP_11613244.1| tRNA modification GTPase TrmE [Neisseria meningitidis M13399]
gi|421555241|ref|ZP_16001176.1| tRNA modification GTPase TrmE [Neisseria meningitidis 98008]
gi|421557551|ref|ZP_16003454.1| tRNA modification GTPase TrmE [Neisseria meningitidis 80179]
gi|433537590|ref|ZP_20494083.1| tRNA modification GTPase TrmE [Neisseria meningitidis 77221]
gi|325133445|gb|EGC56109.1| tRNA modification GTPase TrmE [Neisseria meningitidis M13399]
gi|402331023|gb|EJU66365.1| tRNA modification GTPase TrmE [Neisseria meningitidis 98008]
gi|402334632|gb|EJU69915.1| tRNA modification GTPase TrmE [Neisseria meningitidis 80179]
gi|432271021|gb|ELL26153.1| tRNA modification GTPase TrmE [Neisseria meningitidis 77221]
Length = 448
Score = 365 bits (937), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 206/473 (43%), Positives = 284/473 (60%), Gaps = 27/473 (5%)
Query: 2 LTKNSPIIG-IATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
++ N P I +AT PGRGGVG+IR+SGKNL + E +C KT K PR ATY+ F +
Sbjct: 1 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAEALCGKTPK---PRVATYADFTDADG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID GL+++F AP S+TGEDVIEL GHGGP+++ MLL+ CLE+G RLA PGEFTK
Sbjct: 58 QAIDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLELGA----RLAEPGEFTK 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q E + DLI+AS+ SAA+ A+ SL G FS+ I+ L++ LI LR L+E +
Sbjct: 114 RAFLNDKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEAT 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE+ + L D +L +++ + ++ ++ A++R GLNVVL+G PNVGKSSL
Sbjct: 174 LDFPEEDIDF-LEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G +VAIVT IAGTTRD + + I I+ I DTAG +++ + VE+IG
Sbjct: 233 LNALAGDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAG-------LRETDDVVERIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IER+ + +D+ + + D R + + + I+ P + I + +K D H
Sbjct: 286 IERSRKAVSEADVALVLVDPR-EGLNEKTRAILDALPPELKRIEIHSKSDLHAHAAGGFG 344
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP-YLARERHIHSLNEANYYLSCA 419
I LSA G++ L+ TLL E ES +LAR RH+++L A LS A
Sbjct: 345 TGAETVIALSAKTGDGLDALKRTLLR--EAGWQGESEGLFLARTRHVNALKAAQEELSLA 402
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
N +EL AE LR I G+ T +DLL IFS+FCIGK
Sbjct: 403 ALCGNH-------QIELFAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448
>gi|269215192|ref|ZP_06159102.1| tRNA modification GTPase TrmE [Neisseria lactamica ATCC 23970]
gi|269208082|gb|EEZ74537.1| tRNA modification GTPase TrmE [Neisseria lactamica ATCC 23970]
Length = 536
Score = 365 bits (937), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 206/473 (43%), Positives = 285/473 (60%), Gaps = 27/473 (5%)
Query: 2 LTKNSPIIG-IATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
++ N P I +AT PGRGGVG+IR+SGKNL + E +C KT K PR ATY+ F +
Sbjct: 89 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAEALCGKTPK---PRVATYADFTDADG 145
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID GL+++F AP S+TGEDVIEL GHGGP+++ MLL+ CLE+G RLA PGEFTK
Sbjct: 146 QAIDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLELGA----RLAEPGEFTK 201
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q E + DLI+AS+ SAA+ A+ SL G FS+ I+ L++ LI LR L+E +
Sbjct: 202 RAFLNDKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEAT 261
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE+ + L D +L +++ + ++ ++ A++R GLNVVL+G PNVGKSSL
Sbjct: 262 LDFPEEDIDF-LEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSL 320
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G +VAIVT IAGTTRD + + I I+ I DTAG +++ + VE+IG
Sbjct: 321 LNALAGDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAG-------LRETDDVVERIG 373
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IER+ + +D+ + + D R + + + I+ P + I + +K D H
Sbjct: 374 IERSRKAVSEADVALVLVDPR-EGLNEKTRAILDALPPELKRIEIHSKSDLHAHAAGGFG 432
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP-YLARERHIHSLNEANYYLSCA 419
I LSA G++ L+ TLL E ES +LAR RH+++L A LS A
Sbjct: 433 TGAETVIALSAKTGDGLDALKRTLLR--EAGWQGESEGLFLARTRHVNALKAAQEELSLA 490
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
N +EL+AE LR I G+ T +DLL IFS+FCIGK
Sbjct: 491 ALCGNH-------QIELLAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 536
>gi|421541239|ref|ZP_15987367.1| tRNA modification GTPase TrmE [Neisseria meningitidis 93004]
gi|421551504|ref|ZP_15997494.1| tRNA modification GTPase TrmE [Neisseria meningitidis 69166]
gi|433470884|ref|ZP_20428278.1| tRNA modification GTPase TrmE [Neisseria meningitidis 68094]
gi|433478542|ref|ZP_20435849.1| tRNA modification GTPase TrmE [Neisseria meningitidis 70012]
gi|433527018|ref|ZP_20483637.1| tRNA modification GTPase TrmE [Neisseria meningitidis 69096]
gi|433539750|ref|ZP_20496215.1| tRNA modification GTPase TrmE [Neisseria meningitidis 70030]
gi|402315744|gb|EJU51303.1| tRNA modification GTPase TrmE [Neisseria meningitidis 93004]
gi|402327168|gb|EJU62560.1| tRNA modification GTPase TrmE [Neisseria meningitidis 69166]
gi|432210332|gb|ELK66292.1| tRNA modification GTPase TrmE [Neisseria meningitidis 68094]
gi|432213068|gb|ELK68996.1| tRNA modification GTPase TrmE [Neisseria meningitidis 70012]
gi|432258307|gb|ELL13594.1| tRNA modification GTPase TrmE [Neisseria meningitidis 69096]
gi|432271083|gb|ELL26212.1| tRNA modification GTPase TrmE [Neisseria meningitidis 70030]
Length = 448
Score = 365 bits (937), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 206/473 (43%), Positives = 284/473 (60%), Gaps = 27/473 (5%)
Query: 2 LTKNSPIIG-IATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
++ N P I +AT PGRGGVG+IR+SGKNL + E +C KT K PR ATY+ F +
Sbjct: 1 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAEALCGKTPK---PRTATYADFTDADG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID GL+++F AP S+TGEDVIEL GHGGP+++ MLL+ CLE+G RLA PGEFTK
Sbjct: 58 QAIDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLELGA----RLAEPGEFTK 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q E + DLI+AS+ SAA+ A+ SL G FS+ I+ L++ LI LR L+E +
Sbjct: 114 RAFLNDKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEAT 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE+ + L D +L +++ + ++ ++ A++R GLNVVL+G PNVGKSSL
Sbjct: 174 LDFPEEDIDF-LEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G +VAIVT IAGTTRD + + I I+ I DTAG +++ + VE+IG
Sbjct: 233 LNALAGDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAG-------LRETDDVVERIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IER+ + +D+ + + D R + + + I+ P + I + +K D H
Sbjct: 286 IERSRKAVSEADVALVLVDPR-EGLNEKTRAILDALPPELKRIEIHSKSDLHAHAAGGFG 344
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP-YLARERHIHSLNEANYYLSCA 419
I LSA G++ L+ TLL E ES +LAR RH+++L A LS A
Sbjct: 345 TGAETVIALSAKTGDGLDALKRTLLR--EAGWQGESEGLFLARTRHVNALKAAQEELSLA 402
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
N +EL AE LR I G+ T +DLL IFS+FCIGK
Sbjct: 403 ALCGNH-------QIELFAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448
>gi|433470128|ref|ZP_20427534.1| tRNA modification GTPase TrmE [Neisseria meningitidis 98080]
gi|432201095|gb|ELK57181.1| tRNA modification GTPase TrmE [Neisseria meningitidis 98080]
Length = 448
Score = 365 bits (936), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 205/472 (43%), Positives = 282/472 (59%), Gaps = 25/472 (5%)
Query: 2 LTKNSPIIG-IATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
++ N P I +AT PGRGGVG+IR+SGKNL + E +C KT K PR ATY+ F +
Sbjct: 1 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAEALCGKTPK---PRTATYADFTDADG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID GL+++F AP S+TGEDVIEL GHGGP+++ MLL+ CLE+G RLA PGEFTK
Sbjct: 58 QAIDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLELGA----RLAEPGEFTK 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q E + DLI+AS+ SAA+ A+ SL G FS+ I+ L++ LI LR L+E +
Sbjct: 114 RAFLNDKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEAT 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE+ + L D +L +++ + ++ ++ A++R GLNVVL+G PNVGKSSL
Sbjct: 174 LDFPEEDIDF-LEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G +VAIVT IAGTTRD + + I I+ I DTAG +++ + VE+IG
Sbjct: 233 LNALAGDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAG-------LRETDDVVERIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IER+ + +D+ + + D R + D + I+ P + I + +K D H
Sbjct: 286 IERSRKAVSEADVALVLVDPR-EGVNDKTRAILDALPPELKRIEIHSKSDLHAHAAGGFG 344
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
I LSA G++ L+ TLL Q +LAR RH+++L A LS A
Sbjct: 345 TGAETVIALSAKTGDGLDALKRTLLREA-GWQGEGEGLFLARTRHVNALKAAQEELSLAA 403
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
N +EL AE LR I G+ T +DLL IFS+FCIGK
Sbjct: 404 LCGNH-------QIELFAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448
>gi|291044771|ref|ZP_06570480.1| tRNA modification GTPase mnmE [Neisseria gonorrhoeae DGI2]
gi|291011665|gb|EFE03661.1| tRNA modification GTPase mnmE [Neisseria gonorrhoeae DGI2]
Length = 448
Score = 365 bits (936), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 204/473 (43%), Positives = 285/473 (60%), Gaps = 27/473 (5%)
Query: 2 LTKNSPIIG-IATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
++ N P I +AT PGRGGVG+IR+SGKNL + + +C KT + PR ATY+ F +
Sbjct: 1 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKTPE---PRVATYADFTDADG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID GL+++F AP S+TGEDVIEL GHGGP+++ MLL+ CLE+G RLA PGEFTK
Sbjct: 58 QAIDSGLLLFFAAPASFTGEDVIELQGHGGPVVMEMLLNRCLELGA----RLAEPGEFTK 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q E + DLI+AS SAA+ A+ SL G FS+ I+ L++ LI LR L+E +
Sbjct: 114 RAFLNDKLDLAQAEGVADLIDASGRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE+ + L D +L +++ + ++ ++ A++R GLNVVL+G PNVGKSSL
Sbjct: 174 LDFPEEDIDF-LEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G +VAIVT IAGTTRD + + I I+ I DTAG +++ + VE+IG
Sbjct: 233 LNALAGDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAG-------LRETDDVVERIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IER+ + +D+ + + D R + + + I+ P ++ I + +K D H
Sbjct: 286 IERSRKAVSEADVALVLVDPR-EGLNEKTRMILDTLPSDLKRIEIHSKSDLHAHAAGGFG 344
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP-YLARERHIHSLNEANYYLSCA 419
I LSA G++ L+ TL L E ES +LAR RH+++L A LS A
Sbjct: 345 TGAETVIALSAKTGDGLDALKRTL--LCEAGWQGESEGLFLARTRHVNALKAAQEELSLA 402
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ N +EL AE LR I G+ T +DLL IFS+FCIGK
Sbjct: 403 VLCGNH-------QIELFAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448
>gi|89092260|ref|ZP_01165214.1| GTP-binding protein in thiophene and furan oxidation
[Neptuniibacter caesariensis]
gi|89083348|gb|EAR62566.1| GTP-binding protein in thiophene and furan oxidation
[Oceanospirillum sp. MED92]
Length = 455
Score = 365 bits (936), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 203/475 (42%), Positives = 292/475 (61%), Gaps = 26/475 (5%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
LT N I ATPPGRGGVGI+R+SG +I V K +LKPR+A Y FF N+
Sbjct: 3 LTNNDTITAQATPPGRGGVGIVRVSGPLAKAISTQVLKT---ELKPRYAYYGPFFDSNDQ 59
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
ID+G+ +YF P+S+TGEDV+EL GHGGP+I+ ++L+ K +G RLA PGEF++R
Sbjct: 60 EIDQGIALYFPGPNSFTGEDVLELQGHGGPVIVDLILNRV----KELGARLANPGEFSER 115
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI++S+E AA+ A+ SL G+FSK I+ L++ LINLR +E +
Sbjct: 116 AFLNDKLDLAQAEAIADLIDSSSEQAARCAIRSLQGEFSKRIHELVEALINLRIYVEAAI 175
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFPEE + + + ++L + K+ + + K+ +L+R G++VV+ G+PN GKSSL
Sbjct: 176 DFPEEEIDFLADGK-VLSDLKSVLGKVEAVQAEAKQGSLLREGMSVVIAGRPNAGKSSLL 234
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D +EVE+IGI
Sbjct: 235 NALAGRETAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAP-------DEVERIGI 287
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIP----VIYVWNKIDYSGHQKN 357
R W E++ +D ++ + D++ TD ++I F +P + + NK D SG
Sbjct: 288 NRAWEEIRKADRVLLMVDSQ-STQTDDPEQIWPEFVHQLPESSRITVIRNKADLSGETIG 346
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
++ I LSA ++ G++LLRN L + + + T E ++AR RH+ +L A+ L
Sbjct: 347 QREAHDHTTITLSAKEQSGVDLLRNHLKETMGFSSTTEGG-FMARRRHLDALERAHELLQ 405
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++Q E N EL+AEDLR L+ I G+ T +DLL IFS FCIGK
Sbjct: 406 TG---LDQLEYNGAG--ELLAEDLRQAQNSLNEITGEFTPDDLLGRIFSSFCIGK 455
>gi|374370001|ref|ZP_09628017.1| tRNA modification GTPase TrmE, partial [Cupriavidus basilensis
OR16]
gi|373098486|gb|EHP39591.1| tRNA modification GTPase TrmE, partial [Cupriavidus basilensis
OR16]
Length = 475
Score = 365 bits (936), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 198/457 (43%), Positives = 286/457 (62%), Gaps = 33/457 (7%)
Query: 16 GRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPH 75
GRGG+G++R+SG ++ +I + VC + LK R ATY F + ID GL +YF APH
Sbjct: 31 GRGGIGVVRVSGPDVSAIAQAVCGQA---LKARHATYLPFLDTHGKAIDHGLALYFPAPH 87
Query: 76 SYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVEA 135
SYTGE+V+EL GHGGP+++ MLL+ CL+ G+ IGLR+A PGEFT+RAFLN+KLDL Q EA
Sbjct: 88 SYTGEEVLELQGHGGPVVMQMLLARCLDAGRGIGLRVAEPGEFTRRAFLNDKLDLAQAEA 147
Query: 136 IIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELILNKN 195
+ DLI ASTE+AA+SA S+ G FS I L++++I+LR L+E + DFPEE + L +
Sbjct: 148 VADLIEASTEAAARSAARSMEGVFSDAIRALVEQVIHLRMLVEATLDFPEEEIDF-LEAS 206
Query: 196 DFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSI 255
+ +L I+ L ++ Q K+ +L+R GL+VVL GQPNVGKSSL N+L G+++AIVT I
Sbjct: 207 NARGQLANIRDTLCGVLAQAKQGSLLREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPI 266
Query: 256 AGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIII 315
GTTRD++ +TIQI I DTAG+ + +EVE+IGIERTW + +D+++
Sbjct: 267 PGTTRDRVRETIQIEGIPLHIIDTAGLRE------DATDEVERIGIERTWEAVGRADLVL 320
Query: 316 YVQDAR-YDKH------TDFDKKIIKNFPMNIPVIYVWNKIDYSG----HQKNINYKN-- 362
++ DA Y +H D ++ + P P++ V NKID + H + +
Sbjct: 321 HLVDAADYVEHGLSEIDDAIDDRLSGHLPPGSPILRVVNKIDLAPMVGEHHFGTDRPHVV 380
Query: 363 -----NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
N A +++SA GI+LLR LL L+ Q+ +LARERH+ +L A +L
Sbjct: 381 AAIGPNPAEVWISARTGAGIDLLRGQLLRLV-GWQSGNEGTFLARERHLTALRNAQSHLD 439
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGK 454
A + Q + L+L AE+LR + L+SI G+
Sbjct: 440 LAEERAAQQ----AQALDLFAEELRLAQDHLNSITGE 472
>gi|268600426|ref|ZP_06134593.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae PID18]
gi|268584557|gb|EEZ49233.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae PID18]
Length = 448
Score = 365 bits (936), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 204/473 (43%), Positives = 285/473 (60%), Gaps = 27/473 (5%)
Query: 2 LTKNSPIIG-IATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
++ N P I +AT PGRGGVG+IR+SGKNL + + +C KT + PR ATY+ F +
Sbjct: 1 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKTPE---PRVATYADFTDADG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID GL+++F AP S+TGEDVIEL GHGGP+++ MLL+ CLE+G RLA PGEFTK
Sbjct: 58 QAIDSGLLLFFAAPASFTGEDVIELQGHGGPVVMEMLLNRCLELGA----RLAEPGEFTK 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q E + DLI+AS SAA+ A+ SL G FS+ I+ L++ LI LR L+E +
Sbjct: 114 RAFLNDKLDLAQAEGVADLIDASGRSAARLALRSLKGDFSRRIHGLVEGLITLRMLVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE+ + L D +L +++ + ++ ++ A++R GLNVVL+G PNVGKSSL
Sbjct: 174 LDFPEEDIDF-LEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G +VAIVT IAGTTRD + + I I+ I DTAG +++ + VE+IG
Sbjct: 233 LNALAGDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAG-------LRETDDVVERIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IER+ + +D+ + + D R + + + I+ P ++ I + +K D H
Sbjct: 286 IERSRKAVSEADVALVLVDPR-EGLNEKTRMILDTLPSDLKRIEIHSKSDLHAHAAGGFG 344
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP-YLARERHIHSLNEANYYLSCA 419
I LSA G++ L+ TL L E ES +LAR RH+++L A LS A
Sbjct: 345 TGAETVIALSAKTGDGLDALKRTL--LCEAGWQGESEGLFLARTRHVNALKAAQEELSLA 402
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ N +EL AE LR I G+ T +DLL IFS+FCIGK
Sbjct: 403 VLCGNH-------QIELFAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448
>gi|268685687|ref|ZP_06152549.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae
SK-93-1035]
gi|268625971|gb|EEZ58371.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae
SK-93-1035]
Length = 448
Score = 364 bits (935), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 204/473 (43%), Positives = 285/473 (60%), Gaps = 27/473 (5%)
Query: 2 LTKNSPIIG-IATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
++ N P I +AT PGRGGVG+IR+SGKNL + + +C KT + PR ATY+ F +
Sbjct: 1 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKTPE---PRVATYADFTDADG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID GL+++F AP S+TGEDVIEL GHGGP+++ MLL+ CLE+G RLA PGEFTK
Sbjct: 58 QAIDSGLLLFFAAPASFTGEDVIELQGHGGPVVMEMLLNRCLELGA----RLAEPGEFTK 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q E + DLI+AS+ SAA+ A+ SL G FS+ I+ L++ LI LR L+E +
Sbjct: 114 RAFLNDKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE+ + L D +L +++ + ++ ++ A++R GLNVVL+G PNVGKSSL
Sbjct: 174 LDFPEEDIDF-LEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G +VAIVT IAGTTRD + + I I+ I DTAG +++ + VE+IG
Sbjct: 233 LNALAGDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAG-------LRETDDVVERIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IER+ + +D+ + + D R + + + I+ P ++ I + +K D H
Sbjct: 286 IERSRKAVSEADVALVLVDPR-EGLNEKTRMILDTLPSDLKRIEIHSKSDLHAHAAGGFG 344
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP-YLARERHIHSLNEANYYLSCA 419
I LSA G++ L+ TL L E ES +LAR RH+++L A LS A
Sbjct: 345 TGAETVIALSAKTGDGLDALKRTL--LCEAGWQGESEGLFLARTRHVNALKAAQEELSLA 402
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
N +EL AE LR I G+ T +DLL IFS+FCIGK
Sbjct: 403 ALCGNH-------QIELFAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448
>gi|417853926|ref|ZP_12499260.1| tRNA modification GTPase TrmE [Pasteurella multocida subsp.
multocida str. Anand1_goat]
gi|338218784|gb|EGP04529.1| tRNA modification GTPase TrmE [Pasteurella multocida subsp.
multocida str. Anand1_goat]
Length = 452
Score = 364 bits (935), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 200/474 (42%), Positives = 285/474 (60%), Gaps = 35/474 (7%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + V K K PR A Y F + N++D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPKAVEVAHAVLGKCPK---PRMADYLPFKDSDGNVLDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFKAPHS+TGEDV+EL GHGG ++L +LL L++ GLRLA PGEF+++AFLN+K
Sbjct: 62 ALYFKAPHSFTGEDVLELQGHGGQVVLDLLLKRILQLE---GLRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AA+SA+ SL G+FS +N L+D +I LRT +E + DFP+E
Sbjct: 119 LDLAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEE 178
Query: 188 QELILNK------NDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
+ + + ND +L ++ + K+ +++R G+ VV+ G+PN GKSSL
Sbjct: 179 IDFLADGKIEAHLNDIITQLDHVRS-------EAKQGSILREGMKVVIAGRPNAGKSSLL 231
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 232 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREATDEVERIGI 284
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
R W E++ +D I+ + D+ + D +K + + P NIPV V NK D SG ++ I
Sbjct: 285 VRAWSEIEQADRILLMLDSTEADNQDLEKVRSEFLTKLPSNIPVTIVRNKADLSGEKEGI 344
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+N I LSA + G+ LLR L + +E +LAR RH+ +L +A +L
Sbjct: 345 VEQNGYTVITLSAKTQQGVALLREHLKQSMGYQTNMEGG-FLARRRHLEALEQAATHLQQ 403
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ Q EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 404 GHVQLTQFYAG-----ELLAEELRRVQNHLSEITGQFTSDDLLGNIFSSFCIGK 452
>gi|425066027|ref|ZP_18469147.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pasteurella
multocida subsp. gallicida P1059]
gi|404382567|gb|EJZ79027.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pasteurella
multocida subsp. gallicida P1059]
Length = 452
Score = 364 bits (935), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 200/474 (42%), Positives = 284/474 (59%), Gaps = 35/474 (7%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + V K K PR A Y F + N++D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPKAVEVAHAVLGKCPK---PRMADYLPFKDSDGNVLDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFKAPHS+TGEDV+EL GHGG ++L +LL L++ GLRLA PGEF+++AFLN+K
Sbjct: 62 ALYFKAPHSFTGEDVLELQGHGGQVVLDLLLKRILQLE---GLRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AA+SA+ SL G+FS +N L+D +I LRT +E + DFP+E
Sbjct: 119 LDLAQAEAIADLIDASSEQAARSALKSLQGQFSNKVNQLVDSVIYLRTYVEAAIDFPDEE 178
Query: 188 QELILNK------NDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
+ + + ND +L ++ + K+ +++R G+ VV+ G+PN GKSSL
Sbjct: 179 IDFLADGKIEAHLNDIITQLDHVRS-------EAKQGSILREGMKVVIAGRPNAGKSSLL 231
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 232 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREATDEVERIGI 284
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
R W E++ +D I+ + D+ + D +K + + P NIPV V NK D SG + I
Sbjct: 285 VRAWSEIEQADRILLMLDSTEADNQDLEKVRSEFLTKLPSNIPVTIVRNKADLSGENEGI 344
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+N I LSA + G+ LLR L + +E +LAR RH+ +L +A +L
Sbjct: 345 VEQNGYTVITLSAKTQQGVALLREHLKQSMGYQTNMEGG-FLARRRHLEALEQAATHLQQ 403
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ Q EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 404 GHVQLTQFYAG-----ELLAEELRRVQNHLSEITGQFTSDDLLGNIFSSFCIGK 452
>gi|421566317|ref|ZP_16012069.1| tRNA modification GTPase TrmE [Neisseria meningitidis NM3081]
gi|402340669|gb|EJU75867.1| tRNA modification GTPase TrmE [Neisseria meningitidis NM3081]
Length = 448
Score = 364 bits (935), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 205/473 (43%), Positives = 285/473 (60%), Gaps = 27/473 (5%)
Query: 2 LTKNSPIIG-IATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
++ N P I +AT PGRGGVG+IR+SGKNL + + +C KT K PR ATY+ F ++
Sbjct: 1 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKTPK---PRVATYADFTDEDG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID GL+++F AP S+TGEDVIEL GHGGP+++ MLL+ CLE+G RLA PGEFTK
Sbjct: 58 QAIDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLELGA----RLAEPGEFTK 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q E + DLI+AS+ SAA+ A+ SL G FS+ I+ L++ LI LR L+E +
Sbjct: 114 RAFLNDKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEAT 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE+ + L D +L +++ + ++ ++ A++R GLNVVL+G PNVGKSSL
Sbjct: 174 LDFPEEDIDF-LEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G +VAIVT IAGTTRD + + I I+ I DTAG +++ + VE+IG
Sbjct: 233 LNALAGDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAG-------LRETDDVVERIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IER+ + +D+ + + D R + + + I+ P + I + +K D H
Sbjct: 286 IERSRKAVSEADVALVLVDPR-EGLNEKTRAILDALPPELKRIEIHSKSDLHAHAAGGFG 344
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP-YLARERHIHSLNEANYYLSCA 419
I LSA G++ L+ TLL E ES +LAR RH+++L A LS A
Sbjct: 345 TGAETVIALSAKTGDGLDALKRTLLR--EAGWQGESEGLFLARTRHVNALKAAQEELSLA 402
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
N +EL AE LR I G+ T +DLL IFS+FCIGK
Sbjct: 403 ALCGNH-------QIELFAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448
>gi|14195273|sp|Q9CLQ1.1|MNME_PASMU RecName: Full=tRNA modification GTPase MnmE
Length = 452
Score = 364 bits (935), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 201/474 (42%), Positives = 284/474 (59%), Gaps = 35/474 (7%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + V K K PR A Y F + N++D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPKAVEVAHTVLGKCPK---PRMADYLPFKDSDGNVLDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFKAPHS+TGEDV+EL GHGG ++L +LL L++ GLRLA PGEF+++AFLN+K
Sbjct: 62 ALYFKAPHSFTGEDVLELQGHGGQVVLDLLLKRILQLE---GLRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AA+SA+ SL G+FS +N L+D +I LRT +E + DFP+E
Sbjct: 119 LDLAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEE 178
Query: 188 QELILNK------NDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
+ + + ND +L ++ + K+ +++R G+ VV+ G+PN GKSSL
Sbjct: 179 IDFLADGKIEAHLNDIITQLDHVRS-------EAKQGSILREGMKVVIAGRPNAGKSSLL 231
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 232 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREATDEVERIGI 284
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
R W E++ +D I+ + D+ + D +K + + P NIPV V NK D SG + I
Sbjct: 285 VRAWSEIEQADRILLMLDSTEADNQDLEKVRSEFLTKLPSNIPVTIVRNKADLSGENEGI 344
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+N I LSA + GI LLR L + +E +LAR RH+ +L +A +L
Sbjct: 345 VEQNGYTVITLSAKTQQGIALLREHLKQSMGYQTNMEGG-FLARRRHLEALEQAATHLQQ 403
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ Q EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 404 GHVQLTQFYAG-----ELLAEELRRVQNHLSEITGQFTSDDLLGNIFSSFCIGK 452
>gi|358639583|dbj|BAL26880.1| tRNA modification GTPase [Azoarcus sp. KH32C]
Length = 451
Score = 364 bits (935), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 208/465 (44%), Positives = 285/465 (61%), Gaps = 25/465 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I +AT PGRGGVG+IR+SG L + + + T K +PR A + F ID+G+
Sbjct: 12 IAAVATAPGRGGVGVIRISGPGLLPMAQAL---TGKNPEPRNAGFVRFADSKGATIDEGI 68
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+++F AP S+TGEDV+EL GHGGP+++ MLL+ C+E+G RLA PGEF++RAFLN K
Sbjct: 69 LLFFPAPRSFTGEDVLELQGHGGPVVMQMLLARCVELGA----RLAEPGEFSRRAFLNGK 124
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EA+ DLI AST +AA+SA+ SLSG FS + + D LI+LR L+E + DFPEE
Sbjct: 125 MDLAQAEAVADLIEASTAAAARSAVRSLSGAFSDETHRITDALIDLRMLVEATLDFPEEE 184
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
E L K L I+ +LL ++ + ++ AL+R G+NVVL+GQPNVGKSSL N L G
Sbjct: 185 VEF-LQKGRALERLAGIRGRLLDVLDRARQGALLRTGMNVVLVGQPNVGKSSLLNCLAGE 243
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + +TI I I DTAG +++ + VEKIG+ERTW E
Sbjct: 244 ERAIVTEIAGTTRDALRETIAIEGIPIHIIDTAG-------LRETADPVEKIGVERTWRE 296
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANI 367
++ +D+I+ + DAR + D I P + I V+NKID SG +
Sbjct: 297 IERADVILRLVDARSGLEAE-DATIDAALPTGVERITVFNKIDLSGQAPERRDGGGGIAL 355
Query: 368 YLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSE 427
+LSA GI+LLR+ LL + E LARERH+ +L A ++ A E
Sbjct: 356 HLSAKAGQGIDLLRSELLRVAGWHAHGEDV-VLARERHLVALRRALEHVEIA------GE 408
Query: 428 KNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ LEL AE+LR E L I G+ +++DLL IFS+FCIGK
Sbjct: 409 QS--GALELFAEELRQAQECLGEITGEFSSDDLLGVIFSRFCIGK 451
>gi|385341168|ref|YP_005895039.1| tRNA modification GTPase TrmE [Neisseria meningitidis M01-240149]
gi|325201374|gb|ADY96828.1| tRNA modification GTPase TrmE [Neisseria meningitidis M01-240149]
Length = 448
Score = 364 bits (934), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 204/472 (43%), Positives = 282/472 (59%), Gaps = 25/472 (5%)
Query: 2 LTKNSPIIG-IATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
++ N P I +AT PGRGGVG+IR+SGKNL + + +C KT K PR ATY+ F +
Sbjct: 1 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKTPK---PRVATYADFTDADG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID GL+++F AP S+TGEDVIEL GHGGP+++ MLL+ CLE+G RLA PGEFTK
Sbjct: 58 QAIDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLELGA----RLAEPGEFTK 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q E + DLI+AS+ SAA+ A+ SL G FS+ I+ L++ LI LR L+E +
Sbjct: 114 RAFLNDKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEAT 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE+ + L D +L +++ + ++ ++ A++R GLNVVL+G PNVGKSSL
Sbjct: 174 LDFPEEDIDF-LEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G +VAIVT IAGTTRD + + I I+ I DTAG +++ + VE+IG
Sbjct: 233 LNALAGDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAG-------LRETDDVVERIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IER+ + +D+ + + D R + D + I+ P + I + +K D H
Sbjct: 286 IERSRKAVSEADVALVLVDPR-EGVNDKTRAILDALPPELKRIEIHSKSDLHAHAAGGFG 344
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
I LSA G++ L+ TLL Q +LAR RH+++L A LS A
Sbjct: 345 TGAETVIALSAKTGDGLDALKRTLLREA-GWQGEGEGLFLARTRHVNALKAAQEELSLAA 403
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
N +EL AE LR I G+ T +DLL IFS+FCIGK
Sbjct: 404 LCGNH-------QIELFAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448
>gi|378775790|ref|YP_005178033.1| tRNA modification GTPase MnmE [Pasteurella multocida 36950]
gi|383311879|ref|YP_005364689.1| tRNA modification GTPase TrmE [Pasteurella multocida subsp.
multocida str. HN06]
gi|386835832|ref|YP_006241152.1| tRNA modification GTPase TrmE [Pasteurella multocida subsp.
multocida str. 3480]
gi|421263913|ref|ZP_15714925.1| tRNA modification GTPase TrmE [Pasteurella multocida subsp.
multocida str. P52VAC]
gi|356598338|gb|AET17064.1| tRNA modification GTPase MnmE [Pasteurella multocida 36950]
gi|380873151|gb|AFF25518.1| tRNA modification GTPase TrmE [Pasteurella multocida subsp.
multocida str. HN06]
gi|385202538|gb|AFI47393.1| tRNA modification GTPase TrmE [Pasteurella multocida subsp.
multocida str. 3480]
gi|401688924|gb|EJS84455.1| tRNA modification GTPase TrmE [Pasteurella multocida subsp.
multocida str. P52VAC]
Length = 452
Score = 364 bits (934), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 200/474 (42%), Positives = 284/474 (59%), Gaps = 35/474 (7%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + V K K PR A Y F + N++D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPKAVEVAHAVLGKCPK---PRMADYLPFKDSDGNVLDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFKAPHS+TGEDV+EL GHGG ++L +LL L++ GLRLA PGEF+++AFLN+K
Sbjct: 62 ALYFKAPHSFTGEDVLELQGHGGQVVLDLLLKRILQLE---GLRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AA+SA+ SL G+FS +N L+D +I LRT +E + DFP+E
Sbjct: 119 LDLAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEE 178
Query: 188 QELILNK------NDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
+ + + ND +L ++ + K+ +++R G+ VV+ G+PN GKSSL
Sbjct: 179 IDFLADGKIEAHLNDIITQLDHVRS-------EAKQGSILREGMKVVIAGRPNAGKSSLL 231
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 232 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREATDEVERIGI 284
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
R W E++ +D I+ + D+ + D +K + + P NIPV V NK D SG + I
Sbjct: 285 VRAWSEIEQADRILLMLDSTEADNQDLEKVRSEFLTKLPSNIPVTIVRNKADLSGENEGI 344
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+N I LSA + G+ LLR L + +E +LAR RH+ +L +A +L
Sbjct: 345 VEQNGYTVITLSAKTQQGVALLREHLKQSMGYQTNMEGG-FLARRRHLEALEQAATHLQQ 403
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ Q EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 404 GHVQLTQFYAG-----ELLAEELRRVQNHLSEITGQFTSDDLLGNIFSSFCIGK 452
>gi|237654729|ref|YP_002891043.1| tRNA modification GTPase TrmE [Thauera sp. MZ1T]
gi|237625976|gb|ACR02666.1| tRNA modification GTPase TrmE [Thauera sp. MZ1T]
Length = 448
Score = 364 bits (934), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 198/465 (42%), Positives = 286/465 (61%), Gaps = 28/465 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT PGRGG+G++R+SG L + +C +T + PR A ++ F ++ ID+G+
Sbjct: 12 IAAIATAPGRGGIGVVRVSGAGLGAFALALCGRTPQ---PRIAHFTRFLDEHERPIDEGI 68
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++YF AP S+TGEDV+EL GHGGP+++ MLL CL++G RLA PGEFT+RAFLN K
Sbjct: 69 LLYFAAPASFTGEDVLELQGHGGPVVMQMLLERCLQLGA----RLAEPGEFTRRAFLNGK 124
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q E + DLI AST +AA+SA+ SLSG+FS+ ++ ++D LI+LR L+E + DFPEE
Sbjct: 125 LDLAQAEGVADLIEASTAAAARSAVRSLSGQFSEEVHRIVDALIDLRMLVEATLDFPEEE 184
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L + L I++ L ++ + ++ AL+R+GL+VVL+G PNVGKSSL N L G
Sbjct: 185 IDF-LERARAMPRLESIREALEGVLDRARQGALLRSGLDVVLVGAPNVGKSSLLNQLAGE 243
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + +TIQ+ I DTAG +++ + VE+IGIERTW E
Sbjct: 244 ERAIVTDIAGTTRDALRETIQVEGIPLHIIDTAG-------LRETEDRVERIGIERTWRE 296
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANI 367
+ +D+I+++ +A D D+++ P + I V NKID +G +
Sbjct: 297 IARADVILHLVEAGVAAEGDLDERL----PQGVERIMVANKIDLAGLPAGRVEAGGRVRL 352
Query: 368 YLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSE 427
+SA G+ L+R LL I LARERH+ +L EA ++ A +
Sbjct: 353 QVSARSGEGVELVRQELLR-IAGWHAHGEDVILARERHLLALREALRHVEAAGTQLG--- 408
Query: 428 KNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
LEL AE+LR E+L +I G+ + +DLL IF++FCIGK
Sbjct: 409 -----ALELFAEELRLAQEELGTITGEFSADDLLGVIFARFCIGK 448
>gi|255068623|ref|ZP_05320478.1| tRNA modification GTPase TrmE [Neisseria sicca ATCC 29256]
gi|255047121|gb|EET42585.1| tRNA modification GTPase TrmE [Neisseria sicca ATCC 29256]
Length = 454
Score = 364 bits (934), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 205/478 (42%), Positives = 287/478 (60%), Gaps = 30/478 (6%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M I IAT PGRGGVG+IRLSGKNL + + + K KPR A Y+ F +
Sbjct: 1 MSASQPTIAAIATAPGRGGVGVIRLSGKNLLPLAQTLSGG--KTPKPRTALYTDFLGGDG 58
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID G+++YF AP S+TGEDVIEL GHG P+++ MLLS CLE+G R+A PGEFTK
Sbjct: 59 QPIDNGILLYFAAPASFTGEDVIELQGHGSPVVMDMLLSRCLELGA----RMAEPGEFTK 114
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLNNKLDL Q E++ DLI+AS++SAA+ A+ SL G FS+ I+ L+D LI LR L+E +
Sbjct: 115 RAFLNNKLDLAQAESVADLIDASSKSAARMALRSLKGAFSQHIHELVDDLITLRMLVEAT 174
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE+ + L D +L ++ +L ++ ++ A++R G+NVVL+G PNVGKSSL
Sbjct: 175 LDFPEEDIDF-LEAADARGKLQALQGRLKTVLASAEQGAILREGMNVVLVGAPNVGKSSL 233
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G D+AIVT IAGTTRD + + I ++ I DTAG +++ + VE+IG
Sbjct: 234 LNALAGDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAG-------LRETDDVVEQIG 286
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IER+ + +D+ + + D R + + I+ + P + I + NK D +G +
Sbjct: 287 IERSRKAVSEADVALILIDPREGVNAKT-QAILNSLPEGLKKIEIHNKADLTGEPVAVR- 344
Query: 361 KNNIAN------IYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ +A I LSA G++LL++ LL + Q S +LAR RH+++L+EA
Sbjct: 345 SDGLAQTGAETVISLSAKTGAGLDLLKHALLQEV-GWQGESESLFLARSRHLNALHEAET 403
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L A N +EL AE LR S I G+ T +DLL IFS+FCIGK
Sbjct: 404 ELENAALCDN-------NQIELFAEHLRLAQNACSEITGEFTADDLLGVIFSRFCIGK 454
>gi|389606725|emb|CCA45637.1| tRNA modification GTPase mnmE [Neisseria meningitidis alpha522]
Length = 448
Score = 364 bits (934), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 205/473 (43%), Positives = 284/473 (60%), Gaps = 27/473 (5%)
Query: 2 LTKNSPIIG-IATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
++ N P I +AT PGRGGVG+IR+SGKNL + + +C KT K PR ATY+ F +
Sbjct: 1 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKTPK---PRTATYADFTDADG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID GL+++F AP S+TGEDVIEL GHGGP+++ MLL+ CLE+G RLA PGEFTK
Sbjct: 58 QAIDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLELGA----RLAEPGEFTK 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q E + DLI+AS+ SAA+ A+ SL G FS+ I+ L++ LI LR L+E +
Sbjct: 114 RAFLNDKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEAT 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE+ + L D +L +++ + ++ ++ A++R GLNVVL+G PNVGKSSL
Sbjct: 174 LDFPEEDIDF-LEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G +VAIVT IAGTTRD + + I I+ I DTAG +++ + VE+IG
Sbjct: 233 LNALAGDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAG-------LRETDDVVERIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IER+ + +D+ + + D R + + + I+ P + I + +K D H
Sbjct: 286 IERSRKAVSEADVALVLVDPR-EGLNEKTRAILDALPPELKRIEIHSKSDLHAHAAGRFG 344
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP-YLARERHIHSLNEANYYLSCA 419
I LSA G++ L+ TLL E ES +LAR RH+++L A LS A
Sbjct: 345 TGAETVIALSAKTGDGLDALKRTLLR--EAGWQGESEGLFLARTRHVNALKAAQEELSLA 402
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
N +EL AE LR I G+ T +DLL IFS+FCIGK
Sbjct: 403 ALCGNH-------QIELFAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448
>gi|15603031|ref|NP_246103.1| tRNA modification GTPase TrmE [Pasteurella multocida subsp.
multocida str. Pm70]
gi|12721514|gb|AAK03250.1| ThdF [Pasteurella multocida subsp. multocida str. Pm70]
Length = 465
Score = 364 bits (934), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 201/474 (42%), Positives = 284/474 (59%), Gaps = 35/474 (7%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + V K K PR A Y F + N++D+G+
Sbjct: 18 IVAQATAPGRGGIGILRVSGPKAVEVAHTVLGKCPK---PRMADYLPFKDSDGNVLDQGI 74
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFKAPHS+TGEDV+EL GHGG ++L +LL L++ GLRLA PGEF+++AFLN+K
Sbjct: 75 ALYFKAPHSFTGEDVLELQGHGGQVVLDLLLKRILQLE---GLRLARPGEFSEQAFLNDK 131
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AA+SA+ SL G+FS +N L+D +I LRT +E + DFP+E
Sbjct: 132 LDLAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEE 191
Query: 188 QELILNK------NDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
+ + + ND +L ++ + K+ +++R G+ VV+ G+PN GKSSL
Sbjct: 192 IDFLADGKIEAHLNDIITQLDHVRS-------EAKQGSILREGMKVVIAGRPNAGKSSLL 244
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 245 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREATDEVERIGI 297
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
R W E++ +D I+ + D+ + D +K + + P NIPV V NK D SG + I
Sbjct: 298 VRAWSEIEQADRILLMLDSTEADNQDLEKVRSEFLTKLPSNIPVTIVRNKADLSGENEGI 357
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+N I LSA + GI LLR L + +E +LAR RH+ +L +A +L
Sbjct: 358 VEQNGYTVITLSAKTQQGIALLREHLKQSMGYQTNMEGG-FLARRRHLEALEQAATHLQQ 416
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ Q EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 417 GHVQLTQFYAG-----ELLAEELRRVQNHLSEITGQFTSDDLLGNIFSSFCIGK 465
>gi|345428638|ref|YP_004821754.1| GTPase [Haemophilus parainfluenzae T3T1]
gi|301154697|emb|CBW14160.1| GTPase [Haemophilus parainfluenzae T3T1]
Length = 452
Score = 363 bits (933), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 198/475 (41%), Positives = 287/475 (60%), Gaps = 37/475 (7%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + + V K K PR A Y F + ++D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPRAVEVAQAVLGKCPK---PRMADYLPFKDADGTVLDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK+P+S+TGEDV+EL GHGG ++L +LL L++ G+RLA PGEF+++AFLN+K
Sbjct: 62 ALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQLD---GVRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AA+SA+ SL G+FS +N L+D +I LRT +E S DFP+E
Sbjct: 119 LDLAQAEAIADLIDATSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEASIDFPDEE 178
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQ-------GKKRALIRNGLNVVLIGQPNVGKSSL 240
+ + + KI+ KL +II Q K+ +++R G+ VV+ G+PN GKSSL
Sbjct: 179 IDFLADG--------KIEAKLREIINQLDLVRSEAKQGSILREGMKVVIAGRPNAGKSSL 230
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IG
Sbjct: 231 LNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREATDEVERIG 283
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
I R W E++ +D II + D+ + +K + + P N+PV V NK+D SG
Sbjct: 284 ISRAWTEIEQADRIILMLDSSDPDSQNIEKVRSEFLSKLPNNMPVTIVRNKVDLSGEAVG 343
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
+ +N I+LSA G++LLR L + QT +LAR RH+ +L +A +L
Sbjct: 344 LKEENGTTTIHLSAQTHQGVDLLREHLKQAM-GFQTGMEGGFLARRRHLDALEKAAEHLQ 402
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + + EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 403 IGLVQLTEFHAG-----ELLAEELRLVQANLSEITGQFTSDDLLGNIFSSFCIGK 452
>gi|59802408|ref|YP_209120.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae FA 1090]
gi|194100062|ref|YP_002003202.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae NCCP11945]
gi|254492836|ref|ZP_05106007.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae 1291]
gi|268593908|ref|ZP_06128075.1| tRNA modification GTPase mnmE [Neisseria gonorrhoeae 35/02]
gi|268598084|ref|ZP_06132251.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae MS11]
gi|268683378|ref|ZP_06150240.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae
SK-92-679]
gi|293397863|ref|ZP_06642069.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae F62]
gi|385336957|ref|YP_005890904.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae TCDC-NG08107]
gi|81311136|sp|Q5F529.1|MNME_NEIG1 RecName: Full=tRNA modification GTPase MnmE
gi|226704783|sp|B4RRB9.1|MNME_NEIG2 RecName: Full=tRNA modification GTPase MnmE
gi|59719303|gb|AAW90708.1| putative thiophene and furan oxidation protein [Neisseria
gonorrhoeae FA 1090]
gi|193935352|gb|ACF31176.1| tRNA modification GTPase [Neisseria gonorrhoeae NCCP11945]
gi|226511876|gb|EEH61221.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae 1291]
gi|268547297|gb|EEZ42715.1| tRNA modification GTPase mnmE [Neisseria gonorrhoeae 35/02]
gi|268582215|gb|EEZ46891.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae MS11]
gi|268623662|gb|EEZ56062.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae
SK-92-679]
gi|291611809|gb|EFF40878.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae F62]
gi|317165500|gb|ADV09041.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae TCDC-NG08107]
Length = 448
Score = 363 bits (933), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 204/473 (43%), Positives = 284/473 (60%), Gaps = 27/473 (5%)
Query: 2 LTKNSPIIG-IATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
++ N P I +AT PGRGGVG+IR+SGKNL + + +C KT + PR ATY+ F +
Sbjct: 1 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKTPE---PRVATYADFTDADG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID GL+++F AP S+TGEDVIEL GHGGP+++ MLL+ CLE+G RLA PGEFTK
Sbjct: 58 QAIDSGLLLFFAAPASFTGEDVIELQGHGGPVVMEMLLNRCLELGA----RLAEPGEFTK 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q E + DLI+AS SAA+ A+ SL G FS+ I+ L++ LI LR L+E +
Sbjct: 114 RAFLNDKLDLAQAEGVADLIDASGRSAARLALRSLKGDFSRRIHGLVEGLITLRMLVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE+ + L D +L +++ + ++ ++ A++R GLNVVL+G PNVGKSSL
Sbjct: 174 LDFPEEDIDF-LEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G +VAIVT IAGTTRD + + I I+ I DTAG +++ + VE+IG
Sbjct: 233 LNALAGDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAG-------LRETDDVVERIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IER+ + +D+ + + D R + + + I+ P ++ I + +K D H
Sbjct: 286 IERSRKAVSEADVALVLVDPR-EGLNEKTRMILDTLPSDLKRIEIHSKSDLHAHAAGGFG 344
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP-YLARERHIHSLNEANYYLSCA 419
I LSA G++ L+ TL L E ES +LAR RH+++L A LS A
Sbjct: 345 TGAETVIALSAKTGDGLDALKRTL--LCEAGWQGESEGLFLARTRHVNALKAAQEELSLA 402
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
N +EL AE LR I G+ T +DLL IFS+FCIGK
Sbjct: 403 ALCGNH-------QIELFAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448
>gi|386390209|ref|ZP_10075005.1| tRNA modification GTPase TrmE [Haemophilus paraphrohaemolyticus
HK411]
gi|385693893|gb|EIG24525.1| tRNA modification GTPase TrmE [Haemophilus paraphrohaemolyticus
HK411]
Length = 460
Score = 363 bits (933), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 201/476 (42%), Positives = 290/476 (60%), Gaps = 31/476 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ ATP GRGGVGI+R+SG ++ + V K +LKPR A Y F + ++D+G+
Sbjct: 5 IVAQATPIGRGGVGILRVSGPLANTVAQEVLGK---ELKPRLANYLPFKDSDGTVLDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++FKAP+S+TGEDV+EL GHGG +IL +LL LEI G+R+A GEF+++AFLN+K
Sbjct: 62 ALFFKAPNSFTGEDVLELQGHGGQVILDILLKRILEIK---GVRIARAGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AA+SA+ SL G+FS IN L+D +I LRT +E + DFP+E
Sbjct: 119 LDLAQAEAIADLIDATSEQAARSALKSLQGEFSTKINRLVDSVIYLRTYVEAAIDFPDEE 178
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L L I +L ++ Q+ K+ A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 179 IDF-LADGKIEGHLNDIISQLSQVRQEAKQGAILREGMKVVIAGRPNAGKSSLLNALAGR 237
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI+R W E
Sbjct: 238 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGIQRAWNE 290
Query: 308 LKNSDIIIYVQDARYDKHTDFDKK---IIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++ + D+ K DF + + P N+P+ + NK+D SG + + KN
Sbjct: 291 IEQADHVLLMIDSTEQKADDFKTEWADFLAKLPQNMPITVIRNKVDLSGEMEGLEEKNGE 350
Query: 365 AN--------IYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYL 416
+ I LSA ++G++LLR+ L + T E +LAR RH+ +L A +L
Sbjct: 351 KDGEKDGFTLIRLSAQTKVGVDLLRDHLKKSMGYQSTTEGG-FLARRRHLQALESAAEHL 409
Query: 417 SCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ Q EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 410 EMGHVQLTQFHAG-----ELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 460
>gi|350570035|ref|ZP_08938410.1| tRNA modification GTPase TrmE [Neisseria wadsworthii 9715]
gi|349797495|gb|EGZ51255.1| tRNA modification GTPase TrmE [Neisseria wadsworthii 9715]
Length = 457
Score = 363 bits (933), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 205/477 (42%), Positives = 287/477 (60%), Gaps = 29/477 (6%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
L+ N I IAT PGRGGVG+IR+SGK+L + V Q PR A Y+ F +
Sbjct: 4 LSPNPTIAAIATAPGRGGVGVIRISGKDLLPFAQAVSGGKTPQ--PRTALYTDFLDADGQ 61
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
ID GL++YF AP S+TGEDVIEL GHGGP+++ MLL+ CL ++G R+A PGEFTK
Sbjct: 62 TIDSGLLLYFAAPASFTGEDVIELQGHGGPVVMQMLLARCL----ALGARMAEPGEFTKL 117
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLNNKLDL Q E++ DLI+AS++SAA+ A+ SL G FS+ I+ L++ LI LR L+E +
Sbjct: 118 AFLNNKLDLAQAESVADLIDASSQSAARMAVRSLKGAFSRHIHDLVEDLITLRMLVEATL 177
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFPEE+ + L D L ++++L ++ ++ A++R G+NVVL+G PNVGKSSL
Sbjct: 178 DFPEEDIDF-LEAADAKGRLHALQERLQTVLASAEQGAILREGMNVVLVGAPNVGKSSLL 236
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G D+AIVT IAGTTRD + + I ++ I DTAG+ D + + VE+IGI
Sbjct: 237 NALAGDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAGLRDTD-------DIVEQIGI 289
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYK 361
ER+ ++ +D+ + + D R + + I+++ P N+ I + NK D +G +
Sbjct: 290 ERSQKAVREADVALILIDPREGINAKT-RGILESLPENLKKIEIHNKTDLTGEPAGMFSD 348
Query: 362 NNIA------NIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYY 415
+ A I LSA G++LL+ LL I Q S +LAR RHI++L+ A
Sbjct: 349 RHSALSGADTLIKLSAKTGEGLDLLKQALLQEI-GWQGESESLFLARSRHINALHTAETE 407
Query: 416 LSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L A N +EL AE LR S I G+ T +DLL IFS+FCIGK
Sbjct: 408 LENAALCGNH-------QIELFAEHLRLAQVACSEITGEFTADDLLGVIFSRFCIGK 457
>gi|425063860|ref|ZP_18466985.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pasteurella
multocida subsp. gallicida X73]
gi|404382414|gb|EJZ78875.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pasteurella
multocida subsp. gallicida X73]
Length = 465
Score = 363 bits (933), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 200/474 (42%), Positives = 284/474 (59%), Gaps = 35/474 (7%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + V K K PR A Y F + N++D+G+
Sbjct: 18 IVAQATAPGRGGIGILRVSGPKAVEVAHAVLGKCPK---PRMADYLPFKDSDGNVLDQGI 74
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFKAPHS+TGEDV+EL GHGG ++L +LL L++ GLRLA PGEF+++AFLN+K
Sbjct: 75 ALYFKAPHSFTGEDVLELQGHGGQVVLDLLLKRILQLE---GLRLARPGEFSEQAFLNDK 131
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AA+SA+ SL G+FS +N L+D +I LRT +E + DFP+E
Sbjct: 132 LDLAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEE 191
Query: 188 QELILNK------NDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
+ + + ND +L ++ + K+ +++R G+ VV+ G+PN GKSSL
Sbjct: 192 IDFLADGKIEAHLNDIITQLDHVRS-------EAKQGSILREGMKVVIAGRPNAGKSSLL 244
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 245 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREATDEVERIGI 297
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
R W E++ +D I+ + D+ + D +K + + P NIPV V NK D SG + I
Sbjct: 298 VRAWSEIEQADRILLMLDSTEADNQDLEKVRSEFLTKLPSNIPVTVVRNKADLSGENEGI 357
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+N I LSA + G+ LLR L + +E +LAR RH+ +L +A +L
Sbjct: 358 VEQNGYTVITLSAKTQQGVALLREHLKQSMGYQTNMEGG-FLARRRHLEALEQAATHLQQ 416
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ Q EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 417 GHVQLTQFYAG-----ELLAEELRRVQNHLSEITGQFTSDDLLGNIFSSFCIGK 465
>gi|240013240|ref|ZP_04720153.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae DGI18]
gi|240015686|ref|ZP_04722226.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae FA6140]
gi|240120311|ref|ZP_04733273.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae PID24-1]
gi|268595964|ref|ZP_06130131.1| tRNA modification GTPase mnmE [Neisseria gonorrhoeae FA19]
gi|268602658|ref|ZP_06136825.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae PID1]
gi|268549752|gb|EEZ44771.1| tRNA modification GTPase mnmE [Neisseria gonorrhoeae FA19]
gi|268586789|gb|EEZ51465.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae PID1]
Length = 448
Score = 363 bits (933), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 204/473 (43%), Positives = 284/473 (60%), Gaps = 27/473 (5%)
Query: 2 LTKNSPIIG-IATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
++ N P I +AT PGRGGVG+IR+SGKNL + + +C KT + PR ATY+ F +
Sbjct: 1 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKTPE---PRVATYADFTDADG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID GL+++F AP S+TGEDVIEL GHGGP+++ MLL+ CLE+G RLA PGEFTK
Sbjct: 58 QAIDSGLLLFFAAPASFTGEDVIELQGHGGPVVMEMLLNRCLELGA----RLAEPGEFTK 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q E + DLI+AS SAA+ A+ SL G FS+ I+ L++ LI LR L+E +
Sbjct: 114 RAFLNDKLDLAQAEGVADLIDASGRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE+ + L D +L +++ + ++ ++ A++R GLNVVL+G PNVGKSSL
Sbjct: 174 LDFPEEDIDF-LEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G +VAIVT IAGTTRD + + I I+ I DTAG +++ + VE+IG
Sbjct: 233 LNALAGDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAG-------LRETDDVVERIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IER+ + +D+ + + D R + + + I+ P ++ I + +K D H
Sbjct: 286 IERSRKAVSEADVALVLVDPR-EGLNEKTRMILDTLPSDLKRIEIHSKSDLHAHAAGGFG 344
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP-YLARERHIHSLNEANYYLSCA 419
I LSA G++ L+ TL L E ES +LAR RH+++L A LS A
Sbjct: 345 TGAETVIALSAKTGDGLDALKRTL--LCEAGWQGESEGLFLARTRHVNALKAAQEELSLA 402
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
N +EL AE LR I G+ T +DLL IFS+FCIGK
Sbjct: 403 ALCGNH-------QIELFAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448
>gi|268681207|ref|ZP_06148069.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae
PID332]
gi|268621491|gb|EEZ53891.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae
PID332]
Length = 448
Score = 363 bits (933), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 203/473 (42%), Positives = 285/473 (60%), Gaps = 27/473 (5%)
Query: 2 LTKNSPIIG-IATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
++ N P I +AT PGRGGVG+IR+SGKNL + + +C KT + PR ATY+ F +
Sbjct: 1 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKTPE---PRVATYADFTDADG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID GL+++F AP S+TGEDVIEL GHGGP+++ MLL+ CLE+G RLA PGEFTK
Sbjct: 58 QAIDSGLLLFFAAPASFTGEDVIELQGHGGPVVMEMLLNRCLELGA----RLAEPGEFTK 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q E + DLI+AS SAA+ A+ SL G FS+ I+ L++ LI LR L+E +
Sbjct: 114 RAFLNDKLDLAQAEGVADLIDASGRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE+ + L D +L +++ + ++ ++ A++R GLNVVL+G PNVGKSSL
Sbjct: 174 LDFPEEDIDF-LEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G +V+IVT IAGTTRD + + I I+ I DTAG +++ + VE+IG
Sbjct: 233 LNALAGDEVSIVTDIAGTTRDAVRERILIDGVPVHIVDTAG-------LRETDDVVERIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IER+ + +D+ + + D R + + + I+ P ++ I + +K D H
Sbjct: 286 IERSRKAVSEADVALVLVDPR-EGLNEKTRMILDTLPSDLKRIEIHSKSDLHAHAAGGFG 344
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP-YLARERHIHSLNEANYYLSCA 419
I LSA G++ L+ TL L E ES +LAR RH+++L A LS A
Sbjct: 345 TGAETVIALSAKTGDGLDALKRTL--LCEAGWQGESEGLFLARTRHVNALKAAQEELSLA 402
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ N +EL AE LR I G+ T +DLL IFS+FCIGK
Sbjct: 403 VLCGNH-------QIELFAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448
>gi|313669190|ref|YP_004049474.1| thiophene and furan oxidation protein [Neisseria lactamica 020-06]
gi|313006652|emb|CBN88118.1| probable thiophene and furan oxidation protein [Neisseria lactamica
020-06]
Length = 448
Score = 363 bits (933), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 205/473 (43%), Positives = 284/473 (60%), Gaps = 27/473 (5%)
Query: 2 LTKNSPIIG-IATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
++ N P I +AT PGRGGVG+IR+SGKNL + E +C KT K PR ATY+ F +
Sbjct: 1 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAEALCGKTPK---PRVATYADFTDADG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID GL+++F AP S+TGEDVIEL GHGGP+++ MLL+ CLE+G RLA PGEFTK
Sbjct: 58 QAIDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLELGA----RLAEPGEFTK 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q E + DLI+AS+ SAA+ A+ SL G FS+ I+ L++ LI LR L+E +
Sbjct: 114 RAFLNDKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEAT 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE+ + L D +L +++ + ++ ++ A++R GLNVVL+G PNVGKSSL
Sbjct: 174 LDFPEEDIDF-LEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G +VAIVT IAGTTRD + + I I+ I DTAG +++ + VE+IG
Sbjct: 233 LNALAGDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAG-------LRETDDVVERIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IER+ + +D+ + + D R + + + I+ P + I + +K D H
Sbjct: 286 IERSRKAVSEADVALVLVDPR-EGLNEKTRMILDALPPELKRIEIHSKSDLHAHAAGGFG 344
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP-YLARERHIHSLNEANYYLSCA 419
I LSA G++ L+ LL E ES +LAR RH+++L A LS A
Sbjct: 345 TGAETVIALSAKTGDGLDALKRMLLR--EAGWQGESEGLFLARTRHVNALKAAQEELSLA 402
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
N +EL+AE LR I G+ T +DLL IFS+FCIGK
Sbjct: 403 ALCGNH-------QIELLAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448
>gi|56461736|ref|YP_157017.1| tRNA modification GTPase TrmE [Idiomarina loihiensis L2TR]
gi|81821749|sp|Q5QZJ5.1|MNME_IDILO RecName: Full=tRNA modification GTPase MnmE
gi|56180746|gb|AAV83468.1| ThdF [Idiomarina loihiensis L2TR]
Length = 458
Score = 363 bits (933), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 197/473 (41%), Positives = 292/473 (61%), Gaps = 33/473 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQL-----KPRFATYSSFFCKNNNI 62
I+ ATPPGRGGVGI+R+SGK CK+ ++L KPR A Y F+ +
Sbjct: 11 IVAQATPPGRGGVGIVRVSGK--------ACKEVAEKLLGHCPKPRKAEYLPFYDLQEQL 62
Query: 63 IDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRA 122
+D+G+ ++F P+S+TGEDV+EL GHGGP+I+ M++ + LEI G+R A PGEF++RA
Sbjct: 63 LDEGIALFFPGPNSFTGEDVLELQGHGGPVIIDMIIRAILEIP---GIRPARPGEFSERA 119
Query: 123 FLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFD 182
FLN+KLDL Q EAI DLI+ ++E AAK+A+ SL G+FS I+ L+D +I+LR +E + D
Sbjct: 120 FLNDKLDLTQAEAIADLIDTNSEQAAKAALQSLKGEFSHKIDQLVDAVIHLRIYVEAAID 179
Query: 183 FPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFN 242
FP+E + L+ +L +I +L I Q+ K+ L+R G+ +V+ G+PN GKSSL N
Sbjct: 180 FPDEEIDF-LSDGKVSGDLAEIIDQLFHIEQEAKQGTLMREGMRIVIAGRPNAGKSSLLN 238
Query: 243 SLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302
+L G + AIVT IAGTTRD + + IQI+ I DTAG ++++ + VEKIGIE
Sbjct: 239 ALAGRESAIVTEIAGTTRDVLREHIQIDSMPLHIIDTAG-------LRESPDHVEKIGIE 291
Query: 303 RTWVELKNSDIIIYVQDARYDKHTDFD---KKIIKNFPMNIPVIYVWNKIDYSGHQKNIN 359
R W E++ +D ++++ D++ D + P ++P + NK+D S I+
Sbjct: 292 RAWDEIRQADRVLFMVDSQETSAIHPDDIWPEFFAQLPEDMPYTVIRNKVDLSEEPTGID 351
Query: 360 YKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCA 419
NNI I+LSA GI LLR L + + T E S ++AR RH+ +L +A +L
Sbjct: 352 EHNNIPVIHLSAKTGHGIELLREHLKHCVGYSATSEGS-FMARRRHLEALAKAKVHL--- 407
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ + Q E N E++AE+LR + L+ I G+ T++DLL IF FCIGK
Sbjct: 408 LQGLEQLEANMAG--EILAEELRLTQQHLNEITGEFTSDDLLGQIFGSFCIGK 458
>gi|406598868|ref|YP_006749998.1| tRNA modification GTPase TrmE [Alteromonas macleodii ATCC 27126]
gi|407685792|ref|YP_006800966.1| tRNA modification GTPase TrmE [Alteromonas macleodii str. 'English
Channel 673']
gi|406376189|gb|AFS39444.1| tRNA modification GTPase TrmE [Alteromonas macleodii ATCC 27126]
gi|407247403|gb|AFT76589.1| tRNA modification GTPase TrmE [Alteromonas macleodii str. 'English
Channel 673']
Length = 462
Score = 363 bits (933), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 197/472 (41%), Positives = 286/472 (60%), Gaps = 27/472 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I AT PGRGGVGI+R+SG +I E + L PR ATY+ F NN++ID+G+
Sbjct: 11 ITAQATAPGRGGVGIVRVSGPKAKAIAEALVPSA---LTPRLATYTPFVDANNSVIDQGI 67
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++FK P+S+TGEDV+EL GHGG +++ ML+ + L G + RLA PGEF+++AFLN+K
Sbjct: 68 ALFFKGPNSFTGEDVLELQGHGGQVVMDMLIDAVLATGDA---RLANPGEFSEQAFLNDK 124
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS++ AAKSA+ SL G+FS I L D++++LR +E + DFPEE
Sbjct: 125 LDLAQAEAIADLIDASSKQAAKSALRSLQGEFSTQIQTLSDQIVHLRMYVEAAIDFPEEE 184
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L I + L K+ +Q K+ L+R G+ VV+ G+PN GKSSL N+L G
Sbjct: 185 IDF-LSDGKVSGDLSAIMQSLTKVREQAKQGTLLREGMQVVIAGRPNAGKSSLLNALAGR 243
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
D AIVT IAGTTRD + + I I+ I DTAG ++++ ++VE+IGIER W
Sbjct: 244 DSAIVTDIAGTTRDVLKEHIHIDGMPVHIIDTAG-------LRESPDKVEQIGIERAWQA 296
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYS----GHQKNINY 360
+ +D +++V D+ D + + P IPV V NK D S G
Sbjct: 297 INEADHVLFVVDSTATAVIDPYEIWPEFMARLPQGIPVTVVRNKADLSTLDIGQSTVATE 356
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
+ +I+ I LSA + G++ L+ L + T E ++AR RHI +L++A Y+S
Sbjct: 357 QGDISVINLSAKEGSGVDTLKAHLAKTMGFDTTTEGQ-FIARRRHIDALDQAYSYVSTGE 415
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ ++ + EL+AE+LR H+ L I G+ T++DLL IFS FCIGK
Sbjct: 416 QQLHDAMAG-----ELLAEELRLAHQALCEITGEFTSDDLLGKIFSSFCIGK 462
>gi|416165152|ref|ZP_11607337.1| tRNA modification GTPase TrmE [Neisseria meningitidis N1568]
gi|433474311|ref|ZP_20431665.1| tRNA modification GTPase TrmE [Neisseria meningitidis 97021]
gi|433482741|ref|ZP_20439993.1| tRNA modification GTPase TrmE [Neisseria meningitidis 2006087]
gi|433484746|ref|ZP_20441962.1| tRNA modification GTPase TrmE [Neisseria meningitidis 2002038]
gi|433486987|ref|ZP_20444175.1| tRNA modification GTPase TrmE [Neisseria meningitidis 97014]
gi|325127365|gb|EGC50299.1| tRNA modification GTPase TrmE [Neisseria meningitidis N1568]
gi|432207629|gb|ELK63618.1| tRNA modification GTPase TrmE [Neisseria meningitidis 97021]
gi|432214212|gb|ELK70117.1| tRNA modification GTPase TrmE [Neisseria meningitidis 2006087]
gi|432219521|gb|ELK75363.1| tRNA modification GTPase TrmE [Neisseria meningitidis 2002038]
gi|432220246|gb|ELK76070.1| tRNA modification GTPase TrmE [Neisseria meningitidis 97014]
Length = 448
Score = 363 bits (932), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 204/472 (43%), Positives = 282/472 (59%), Gaps = 25/472 (5%)
Query: 2 LTKNSPIIG-IATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
++ N P I +AT PGRGGVG+IR+SGKNL + E +C KT K PR ATY+ F +
Sbjct: 1 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAEALCGKTPK---PRTATYADFTDADG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID GL+++F AP S+TGEDVIEL GHGGP+++ MLL+ CLE+G RLA PGEFTK
Sbjct: 58 QAIDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLELGA----RLAEPGEFTK 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q E + DLI+AS+ SAA+ A+ SL G FS+ I+ L++ LI LR L+E +
Sbjct: 114 RAFLNDKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEAT 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE+ + L D +L +++ + ++ ++ A++R GLNVVL+G PNVGKSSL
Sbjct: 174 LDFPEEDIDF-LEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G +VAIVT IAGTTRD + + I I+ I DTAG +++ + VE+IG
Sbjct: 233 LNALAGDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAG-------LRETDDVVERIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IER+ + +D+ + + D R + + + I+ P + I + +K D H
Sbjct: 286 IERSRKAVSEADVALVLVDPR-EGLNEKTRAILDALPPELKRIEIHSKSDLHAHAAGGFG 344
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
I LSA G++ L+ TLL Q +LAR RH+++L A LS A
Sbjct: 345 TGAETVIALSAKTGDGLDALKRTLLREA-GWQGEGEGLFLARTRHVNALKAAQEELSLAA 403
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
N +EL AE LR I G+ T +DLL IFS+FCIGK
Sbjct: 404 LCGNH-------QIELFAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448
>gi|347821542|ref|ZP_08874976.1| tRNA modification GTPase TrmE [Verminephrobacter aporrectodeae
subsp. tuberculatae At4]
Length = 475
Score = 363 bits (932), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 199/486 (40%), Positives = 294/486 (60%), Gaps = 34/486 (6%)
Query: 5 NSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIID 64
+ PI+ IAT GRG VGI+R+SG ++ ++V+ +C + L+PR A+Y F ID
Sbjct: 6 HDPIVAIATAQGRGAVGIVRVSGHSIGALVQALCARA---LRPREASYLPFRDARGQAID 62
Query: 65 KGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSI----------GLRLAM 114
+GL +YF PHSYTGEDV+EL HGGP++L +LL+ CLE G S+ GLR+A
Sbjct: 63 QGLALYFPGPHSYTGEDVLELQAHGGPVVLQLLLARCLEAGASVDPATGRACLPGLRVAQ 122
Query: 115 PGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLR 174
PGEFT+RAFLN+K+DL Q EAI DLI+ASTE+AA+SA SLSG FS I+ L D LI+LR
Sbjct: 123 PGEFTERAFLNDKIDLAQAEAIADLIDASTEAAARSASRSLSGAFSAEIHSLRDALIHLR 182
Query: 175 TLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPN 234
TL+E + DFPEE + L + D +L +++ L ++Q+ ++ AL+R G+ VV+ GQPN
Sbjct: 183 TLVEATLDFPEEEIDF-LRQADARGQLSTLQRTLDCVMQRARQGALLREGIRVVIAGQPN 241
Query: 235 VGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNIN 294
GKSSL N+L G+++AIVT +AGTTRDK+ +TIQI + DTAG ++ + +
Sbjct: 242 AGKSSLLNALAGAELAIVTPVAGTTRDKVEQTIQIEGVPLHVIDTAG-------LRSSAD 294
Query: 295 EVEKIGIERTWVELKNSDIIIYVQD------ARY-DKHTDFDKKIIKNFPMNIPVIYVWN 347
VE++GI R W E+ +D ++++ D A+Y + + + + VI VWN
Sbjct: 295 AVERMGIARAWDEIAAADAVLFLHDLSRAGAAQYMADDAAIEHALAQKLSPAVAVIDVWN 354
Query: 348 KID-YSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHI 406
K D ++ LSA G++ LR LL+ + Q+ +AR RH+
Sbjct: 355 KTDCALAAPAPPAAGAARPSVRLSARTGEGLDGLRCILLE-VAGWQSAPEGICIARARHV 413
Query: 407 HSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFS 466
+L + +L A ++ + + L+L+AE+LR L++I G ++LL IFS
Sbjct: 414 EALQAVSAHLHEA----SEQLQAQDPALDLLAEELRLALNALNAITGAFGADELLGAIFS 469
Query: 467 QFCIGK 472
+FCIGK
Sbjct: 470 RFCIGK 475
>gi|15677815|ref|NP_274979.1| tRNA modification GTPase TrmE [Neisseria meningitidis MC58]
gi|385852069|ref|YP_005898584.1| tRNA modification GTPase TrmE [Neisseria meningitidis M04-240196]
gi|385854031|ref|YP_005900545.1| tRNA modification GTPase TrmE [Neisseria meningitidis H44/76]
gi|416198975|ref|ZP_11619285.1| tRNA modification GTPase TrmE [Neisseria meningitidis CU385]
gi|416214813|ref|ZP_11623107.1| tRNA modification GTPase TrmE [Neisseria meningitidis M01-240013]
gi|427826655|ref|ZP_18993705.1| tRNA modification GTPase TrmE [Neisseria meningitidis H44/76]
gi|433465965|ref|ZP_20423435.1| tRNA modification GTPase TrmE [Neisseria meningitidis NM422]
gi|433489159|ref|ZP_20446306.1| tRNA modification GTPase TrmE [Neisseria meningitidis M13255]
gi|433491339|ref|ZP_20448451.1| tRNA modification GTPase TrmE [Neisseria meningitidis NM418]
gi|433505864|ref|ZP_20462793.1| tRNA modification GTPase TrmE [Neisseria meningitidis 9506]
gi|433507976|ref|ZP_20464871.1| tRNA modification GTPase TrmE [Neisseria meningitidis 9757]
gi|433510127|ref|ZP_20466982.1| tRNA modification GTPase TrmE [Neisseria meningitidis 12888]
gi|433512186|ref|ZP_20468998.1| tRNA modification GTPase TrmE [Neisseria meningitidis 4119]
gi|14195279|sp|Q9JXL4.1|MNME_NEIMB RecName: Full=tRNA modification GTPase MnmE
gi|7227248|gb|AAF42314.1| thiophene and furan oxidation protein ThdF [Neisseria meningitidis
MC58]
gi|316985629|gb|EFV64576.1| tRNA modification GTPase TrmE [Neisseria meningitidis H44/76]
gi|325139307|gb|EGC61848.1| tRNA modification GTPase TrmE [Neisseria meningitidis CU385]
gi|325143695|gb|EGC66014.1| tRNA modification GTPase TrmE [Neisseria meningitidis M01-240013]
gi|325201035|gb|ADY96490.1| tRNA modification GTPase TrmE [Neisseria meningitidis H44/76]
gi|325206892|gb|ADZ02345.1| tRNA modification GTPase TrmE [Neisseria meningitidis M04-240196]
gi|432200662|gb|ELK56752.1| tRNA modification GTPase TrmE [Neisseria meningitidis NM422]
gi|432220337|gb|ELK76159.1| tRNA modification GTPase TrmE [Neisseria meningitidis M13255]
gi|432225473|gb|ELK81216.1| tRNA modification GTPase TrmE [Neisseria meningitidis NM418]
gi|432238771|gb|ELK94335.1| tRNA modification GTPase TrmE [Neisseria meningitidis 9506]
gi|432238879|gb|ELK94441.1| tRNA modification GTPase TrmE [Neisseria meningitidis 9757]
gi|432244585|gb|ELL00071.1| tRNA modification GTPase TrmE [Neisseria meningitidis 12888]
gi|432244976|gb|ELL00454.1| tRNA modification GTPase TrmE [Neisseria meningitidis 4119]
Length = 448
Score = 363 bits (932), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 205/473 (43%), Positives = 284/473 (60%), Gaps = 27/473 (5%)
Query: 2 LTKNSPIIG-IATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
++ N P I +AT PGRGGVG+IR+SGKNL + + +C KT K PR ATY+ F +
Sbjct: 1 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKTPK---PRTATYADFTDTDG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID GL+++F AP S+TGEDVIEL GHGGP+++ MLL+ CLE+G RLA PGEFTK
Sbjct: 58 QAIDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLELGA----RLAEPGEFTK 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q E + DLI+AS+ SAA+ A+ SL G FS+ I+ L++ LI LR L+E +
Sbjct: 114 RAFLNDKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEAT 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE+ + L D +L +++ + ++ ++ A++R GLNVVL+G PNVGKSSL
Sbjct: 174 LDFPEEDIDF-LEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G +VAIVT IAGTTRD + + I I+ I DTAG +++ + VE+IG
Sbjct: 233 LNALAGDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAG-------LRETDDVVERIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IER+ + +D+ + + D R + + + I+ P + I + +K D H
Sbjct: 286 IERSRKAVSEADVALVLVDPR-EGLNEKTRAILDALPPELKRIEIHSKSDLHAHAAGGFG 344
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP-YLARERHIHSLNEANYYLSCA 419
I LSA G++ L+ TLL E ES +LAR RH+++L A LS A
Sbjct: 345 TGAETVIALSAKTGDGLDALKRTLLR--EAGWQGESEGLFLARTRHVNALKAAQEELSLA 402
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
N +EL AE LR I G+ T +DLL IFS+FCIGK
Sbjct: 403 ALCGNH-------QIELFAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448
>gi|419802400|ref|ZP_14327587.1| tRNA modification GTPase TrmE [Haemophilus parainfluenzae HK262]
gi|385190262|gb|EIF37710.1| tRNA modification GTPase TrmE [Haemophilus parainfluenzae HK262]
Length = 452
Score = 363 bits (932), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 201/475 (42%), Positives = 289/475 (60%), Gaps = 37/475 (7%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + + V K K PR A Y F + ++D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPKAVEVAQAVLGKCPK---PRMADYLPFKDADGTVLDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK+P+S+TGEDV+EL GHGG ++L +LL L++ G+RLA PGEF+++AFLN+K
Sbjct: 62 ALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQLD---GVRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AA+SA+ SL G+FS +N L+D +I LRT +E S DFP+E
Sbjct: 119 LDLAQAEAIADLIHATSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEASIDFPDEE 178
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQ-------GKKRALIRNGLNVVLIGQPNVGKSSL 240
+ + + KI+ KL +II Q K+ +++R G+ VV+ G+PN GKSSL
Sbjct: 179 IDFLADG--------KIEAKLREIINQLDLVRSEAKQGSILREGMKVVIAGRPNAGKSSL 230
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IG
Sbjct: 231 LNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREATDEVERIG 283
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
I R W E++ +D II + D+ + +K + + P N+PV V NK+D SG
Sbjct: 284 ISRAWTEIEQADRIILMLDSSDPDSQNIEKVRSEFLSKLPNNMPVTIVRNKVDLSGEAVG 343
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
I +N + LSA G++LLR L + QT +LAR RH+ +L +A +L
Sbjct: 344 IKEENGTTTVCLSAQTHQGVDLLREHLKQAM-GFQTGMEGGFLARRRHLDALEKAAEHLQ 402
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
I ++ +E N EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 403 --IGLVQLTEFNAG---ELLAEELRLVQANLSEITGQFTSDDLLGNIFSSFCIGK 452
>gi|330505868|ref|YP_004382737.1| tRNA modification GTPase TrmE [Pseudomonas mendocina NK-01]
gi|328920154|gb|AEB60985.1| tRNA modification GTPase TrmE [Pseudomonas mendocina NK-01]
Length = 455
Score = 363 bits (932), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 190/469 (40%), Positives = 281/469 (59%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I +AT GRGGVGI+R+SG + + +C++ +LKPRFA + FF + + +D+GL
Sbjct: 8 IAAVATAQGRGGVGIVRVSGPLAGDLAQAICRR---ELKPRFAHHGPFFAEQDQTLDEGL 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
IYF P+S+TGEDV+EL GHGGP++L +LL CLE+G RLA PGEF++RAFLN+K
Sbjct: 65 AIYFPGPNSFTGEDVLELQGHGGPVVLDLLLRRCLELGA----RLARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+E AA++A+ SL G+FSK ++ L + LI LR +E + DFPEE
Sbjct: 121 LDLAQAEAIADLIEASSEQAARNALRSLQGEFSKRVHALTESLIQLRIYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + + ++L ++ L ++++ + AL+R+G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDFLADGH-VLSQLDSVRADLSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ + DTAG+ D + + VE+IG+ER
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTD-------DHVERIGVERALKA 292
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYK-NN 363
+ +D ++ V D+ + D + ++ P V + NK D SG + +
Sbjct: 293 ISEADRVLLVVDSTAPEAADPFALWPEFLEQRPDPARVTLIRNKADLSGEAVGLQTSADG 352
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
+ LSA G+ LLR L + QT ES + AR RH+ +L++A YL
Sbjct: 353 HVTLSLSAKSAEGLELLREHLKACMGYQQTAESG-FSARRRHLEALHQAEQYLQH----- 406
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 407 GRNQLTLMGAGELLAEDLRMAQQALGEITGAFSSDDLLGRIFSSFCIGK 455
>gi|417851166|ref|ZP_12496940.1| tRNA modification GTPase TrmE [Pasteurella multocida subsp.
gallicida str. Anand1_poultry]
gi|338219941|gb|EGP05530.1| tRNA modification GTPase TrmE [Pasteurella multocida subsp.
gallicida str. Anand1_poultry]
Length = 452
Score = 363 bits (932), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 199/474 (41%), Positives = 284/474 (59%), Gaps = 35/474 (7%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + V K K PR A Y F + N++D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPKAVEVAHAVLGKCPK---PRMADYLPFKDSDGNVLDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFKAPHS+TGEDV+EL GHGG ++L +LL L++ GLRLA PGEF+++AFLN+K
Sbjct: 62 ALYFKAPHSFTGEDVLELQGHGGQVVLDLLLKRILQLE---GLRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AA+SA+ SL G+FS +N L+D +I LRT +E + DFP+E
Sbjct: 119 LDLAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEE 178
Query: 188 QELILNK------NDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
+ + + ND +L ++ + K+ +++R G+ VV+ G+PN GKSSL
Sbjct: 179 IDFLADGKIEAHLNDIITQLDHVRS-------EAKQGSILREGMKVVIAGRPNAGKSSLL 231
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 232 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREATDEVERIGI 284
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
R W E++ +D I+ + D+ + D +K + + P NIPV V NK D +G + I
Sbjct: 285 VRAWSEIEQADRILLMLDSTEADNQDLEKVRSEFLTKLPSNIPVTIVRNKADLNGENEGI 344
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+N I LSA + G+ LLR L + +E +LAR RH+ +L +A +L
Sbjct: 345 VEQNGYTAITLSAKTQQGVALLREHLKQSMGYQTNMEGG-FLARRRHLEALEQAATHLQQ 403
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ Q EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 404 GHVQLTQFYAG-----ELLAEELRRVQNHLSEITGQFTSDDLLGNIFSSFCIGK 452
>gi|392547701|ref|ZP_10294838.1| tRNA modification GTPase TrmE [Pseudoalteromonas rubra ATCC 29570]
Length = 454
Score = 363 bits (931), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 203/476 (42%), Positives = 290/476 (60%), Gaps = 26/476 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKT-KKQLKPRFATYSSFFCKN 59
M+ +++ I AT PGRGGVGIIR+SG ++ E V K K K R+A Y F
Sbjct: 1 MIAQDT-IAAQATAPGRGGVGIIRISG----TLAEQVAHKILGKCPKTRYAEYLPFQTLQ 55
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFT 119
+D+G+ ++FK P+S+TGEDV+EL GHGGP++L MLL EI + G+RLA PGEF+
Sbjct: 56 GEQLDQGIALFFKGPNSFTGEDVLELQGHGGPVVLDMLLK---EISQVEGVRLAKPGEFS 112
Query: 120 KRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEF 179
+RAF+N+KLDL Q EAI DLINA++E AAKSA+ SL G FSK IN L++++I+LR +E
Sbjct: 113 ERAFMNDKLDLTQAEAIADLINATSEQAAKSALHSLQGDFSKHINALVEQVIHLRMYVEA 172
Query: 180 SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
+ DFP+E + L+ +L I +L + QQ K+ +++R G+ VV+ G+PN GKSS
Sbjct: 173 AIDFPDEEIDF-LSDGKVAGDLKAIIAQLSVVRQQAKQGSIMREGMKVVIAGRPNAGKSS 231
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D K VE+I
Sbjct: 232 LLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDSPDK-------VEQI 284
Query: 300 GIERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQK 356
GIER W E++ +D ++++ D TD + + I+ P + + + NK+D SG Q
Sbjct: 285 GIERAWDEIRAADHVLFMVDGTETNETDPARIWPEFIEQLPAGMDITVIRNKVDLSGEQT 344
Query: 357 NINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYL 416
++ + A I LSA GI+LLR L I T E ++AR RH+ +L A +L
Sbjct: 345 GTSHDHGHALIRLSAKDSTGIDLLREHLKACIGFTGATEGG-FMARRRHLDALERAAEHL 403
Query: 417 SCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
I Q++ E++AE+LR + L+ I G+ T++DLL IFS FCIGK
Sbjct: 404 E-----IGQTQLEMHIAGEILAEELRLTQQHLNEITGEFTSDDLLGKIFSSFCIGK 454
>gi|91777105|ref|YP_546861.1| tRNA modification GTPase TrmE [Methylobacillus flagellatus KT]
gi|123078704|sp|Q1GXL7.1|MNME_METFK RecName: Full=tRNA modification GTPase MnmE
gi|91711092|gb|ABE51020.1| tRNA modification GTPase trmE [Methylobacillus flagellatus KT]
Length = 446
Score = 363 bits (931), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 205/465 (44%), Positives = 287/465 (61%), Gaps = 25/465 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT PG GG+G++R+SG + I E V PR A Y +F + +ID+G+
Sbjct: 7 IAAIATAPGSGGIGVVRISGPSSRLIAEAVLGHCPP---PRHAAYLAFRDAHALLIDRGI 63
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
IY+ PHSYTGEDV+EL HGGP ++ +LL CLE+G R A PGEFT+RA+LN+K
Sbjct: 64 AIYYPGPHSYTGEDVLELQAHGGPALMQILLKRCLELGA----RQAEPGEFTRRAYLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EA+ D+INA+TE+AA+SA+ SLSG+FS I+ L KL++LR +E DFPEE+
Sbjct: 120 LDLAQAEAVADVINAATEAAARSAVRSLSGEFSARIHSLQQKLVDLRLYVEACLDFPEED 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ I ++ +L ++ L + ++ ++ L+R GL VVL+GQPNVGKSSL N L G
Sbjct: 180 IDFI-SQGRVAEKLAEVTAGLEAVFREARQGNLLREGLQVVLVGQPNVGKSSLMNQLAGE 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+VAIVT IAGTTRD I +IQIN ITDTAG+ + N +EVE+ GI RTW
Sbjct: 239 EVAIVTPIAGTTRDTIKNSIQINGITLHITDTAGLRETN-------DEVEQHGIARTWRA 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANI 367
L+N+ + + + DA + +K I+ P +P I++ NKID I ++ +I
Sbjct: 292 LENAGVALLLVDAAHGI-GKVEKSILARLPQFLPKIWIHNKIDLESTPPKIEEQDGETHI 350
Query: 368 YLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSE 427
+LSA G++LLR LLD I Q ++AR RH+ +LN+ +L A + Q+
Sbjct: 351 HLSARTGDGVHLLRQRLLD-IAGWQPSGEGVFMARSRHLLALNKVRDHLEVAAGRLMQA- 408
Query: 428 KNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
EL AE+LR + LS+I G+ T++DLL IFS+FCIGK
Sbjct: 409 -------ELFAEELRLAQDALSTITGEFTSDDLLGEIFSRFCIGK 446
>gi|161869216|ref|YP_001598382.1| tRNA modification GTPase TrmE [Neisseria meningitidis 053442]
gi|385324930|ref|YP_005879369.1| tRNA modification GTPase TrmE [Neisseria meningitidis 8013]
gi|385329235|ref|YP_005883538.1| tRNA modification GTPase TrmE [Neisseria meningitidis alpha710]
gi|416174684|ref|ZP_11609276.1| tRNA modification GTPase TrmE [Neisseria meningitidis OX99.30304]
gi|205415782|sp|A9M0N5.1|MNME_NEIM0 RecName: Full=tRNA modification GTPase MnmE
gi|161594769|gb|ABX72429.1| thiophene and furan oxidation protein [Neisseria meningitidis
053442]
gi|261393317|emb|CAX50949.1| tRNA modification GTPase TrmE [Neisseria meningitidis 8013]
gi|308390087|gb|ADO32407.1| tRNA modification GTPase TrmE [Neisseria meningitidis alpha710]
gi|325129416|gb|EGC52248.1| tRNA modification GTPase TrmE [Neisseria meningitidis OX99.30304]
Length = 448
Score = 363 bits (931), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 203/472 (43%), Positives = 282/472 (59%), Gaps = 25/472 (5%)
Query: 2 LTKNSPIIG-IATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
++ N P I +AT PGRGGVG+IR+SGKNL + + +C KT K PR ATY+ F +
Sbjct: 1 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKTPK---PRVATYADFTDADG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID GL+++F AP S+TGEDVIEL GHGGP+++ MLL+ CLE+G RLA PGEFTK
Sbjct: 58 QAIDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLELGA----RLAEPGEFTK 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q E + DLI+AS+ SAA+ A+ SL G FS+ I+ L++ LI LR L+E +
Sbjct: 114 RAFLNDKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEAT 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE+ + L D +L +++ + ++ ++ A++R GLNVVL+G PNVGKSSL
Sbjct: 174 LDFPEEDIDF-LEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G +VAIVT IAGTTRD + + I I+ I DTAG +++ + VE+IG
Sbjct: 233 LNALAGDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAG-------LRETDDVVERIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IER+ + +D+ + + D R + + + I+ P + I + +K D H
Sbjct: 286 IERSRKAVSEADVALVLVDPR-EGLNEKTRAILDALPSELKRIEIHSKSDLHAHAAGGFG 344
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
I LSA G++ L+ TLL Q +LAR RH+++L A LS A
Sbjct: 345 TGAETVIALSAKTGDGLDALKRTLLREA-GWQGEGEGLFLARTRHVNALKAAQEELSLAA 403
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
N +EL AE LR I G+ T +DLL IFS+FCIGK
Sbjct: 404 LCGNH-------QIELFAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448
>gi|304388556|ref|ZP_07370656.1| tRNA modification GTPase TrmE [Neisseria meningitidis ATCC 13091]
gi|304337453|gb|EFM03622.1| tRNA modification GTPase TrmE [Neisseria meningitidis ATCC 13091]
Length = 448
Score = 363 bits (931), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 205/473 (43%), Positives = 284/473 (60%), Gaps = 27/473 (5%)
Query: 2 LTKNSPIIG-IATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
++ N P I +AT GRGGVG+IR+SGKNL + E +C KT K PR ATY+ F +
Sbjct: 1 MSDNVPTIAAVATASGRGGVGVIRISGKNLLPMAEALCGKTPK---PRVATYADFTDADG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID GL+++F AP S+TGEDVIEL GHGGP+++ MLL+ CLE+G RLA PGEFTK
Sbjct: 58 QAIDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLELGA----RLAEPGEFTK 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q E + DLI+AS+ SAA+ A+ SL G FS+ I+ L++ LI LR L+E +
Sbjct: 114 RAFLNDKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEAT 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE+ + L D +L +++ + ++ ++ A++R GLNVVL+G PNVGKSSL
Sbjct: 174 LDFPEEDIDF-LEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G +VAIVT IAGTTRD + + I I+ I DTAG +++ + VE+IG
Sbjct: 233 LNALAGDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAG-------LRETDDVVERIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IER+ + +D+ + + D R + + + I+ P + I + +K D H
Sbjct: 286 IERSRKAVSEADVALVLVDPR-EGLNEKTRAILDTLPSELKRIEIHSKSDLHAHAAGGFG 344
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP-YLARERHIHSLNEANYYLSCA 419
I LSA G++ L+ TLL E ES +LAR RH+++L A LS A
Sbjct: 345 TGAETVIALSAKTGNGLDALKRTLLR--EAGWQGESEGLFLARTRHVNALKAAQEELSLA 402
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
N +EL+AE LR I G+ T +DLL IFS+FCIGK
Sbjct: 403 ALCGNH-------QIELLAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448
>gi|407702030|ref|YP_006826817.1| tRNA modification GTPase TrmE [Alteromonas macleodii str. 'Black
Sea 11']
gi|407251177|gb|AFT80362.1| tRNA modification GTPase TrmE [Alteromonas macleodii str. 'Black
Sea 11']
Length = 462
Score = 362 bits (930), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 198/476 (41%), Positives = 287/476 (60%), Gaps = 35/476 (7%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I AT PGRGGVGI+R+SG +I E + L PR ATY+ F NN++ID+G+
Sbjct: 11 ITAQATAPGRGGVGIVRVSGPKAKAIAEALVPSA---LTPRLATYTPFVDANNSVIDQGI 67
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++FK P+S+TGEDV+EL GHGG +++ ML+ + L G + RLA PGEF+++AFLN+K
Sbjct: 68 ALFFKGPNSFTGEDVLELQGHGGQVVMDMLIDAVLATGHA---RLANPGEFSEQAFLNDK 124
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS++ AAKSA+ SL G+FS I L D++++LR +E + DFPEE
Sbjct: 125 LDLAQAEAIADLIDASSKQAAKSALRSLQGEFSTQIQTLSDQIVHLRMYVEAAIDFPEEE 184
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L I + L K+ +Q K+ L+R G+ VV+ G+PN GKSSL N+L G
Sbjct: 185 IDF-LSDGKVSGDLSAIMQSLTKVREQAKQGTLLREGMQVVIAGRPNAGKSSLLNALAGR 243
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
D AIVT IAGTTRD + + I I+ I DTAG ++++ ++VE+IGIER W
Sbjct: 244 DSAIVTDIAGTTRDVLKEHIHIDGMPVHIIDTAG-------LRESPDKVEQIGIERAWQA 296
Query: 308 LKNSDIIIYVQDAR-------YDKHTDFDKKIIKNFPMNIPVIYVWNKIDYS----GHQK 356
+ +D +++V D+ Y+ +F + P IPV V NK D S G
Sbjct: 297 INEADHVLFVVDSTATVVIDPYEIWPEF----MARLPQGIPVTVVRNKADLSTLDIGQST 352
Query: 357 NINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYL 416
+ I+ I LSA + G++ L+ L + T E ++AR RHI +L++A Y+
Sbjct: 353 VATEQGEISVINLSAKEGSGVDTLKAHLAKTMGFDTTTEGQ-FIARRRHIDALDQAYSYV 411
Query: 417 SCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
S + ++ + EL+AE+LR H+ L I G+ T++DLL IFS FCIGK
Sbjct: 412 STGEQQLHDAMAG-----ELLAEELRLAHQALCEITGEFTSDDLLGKIFSSFCIGK 462
>gi|319897487|ref|YP_004135684.1| tRNA modification gtpase mnme [Haemophilus influenzae F3031]
gi|317432993|emb|CBY81364.1| tRNA modification GTPase mnmE [Haemophilus influenzae F3031]
Length = 452
Score = 362 bits (930), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 199/468 (42%), Positives = 286/468 (61%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + + + K K PR A Y F + I+D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPLATKVAQAILGKCPK---PRMADYLPFKDADGTILDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
V+YFK+P+S+TGEDV+EL GHGG ++L +LL L+I G+RLA PGEF+++AFLN+K
Sbjct: 62 VLYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQID---GIRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E A +SA+ SL G+FSK +N L+D +I LRT +E S DFP+E
Sbjct: 119 LDLAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE 178
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ +++ N L I +L + + K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 179 IDFLVDGKIEAN-LRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGR 237
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D I+EVE+IGI R W E
Sbjct: 238 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRD-------AIDEVERIGISRAWTE 290
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D II + D+ + D K + + P +PV V NKID +G Q + + +
Sbjct: 291 IEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGY 350
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G+ LLR L + QT +LAR RH+ +L++A +L + +
Sbjct: 351 QMISLSAQTHDGVQLLREHLKQAM-GFQTGMEGGFLARRRHLDALDKAAEHLQIGLVQLT 409
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 410 EFHAG-----ELLAEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452
>gi|226326927|ref|ZP_03802445.1| hypothetical protein PROPEN_00787 [Proteus penneri ATCC 35198]
gi|225204764|gb|EEG87118.1| tRNA modification GTPase TrmE [Proteus penneri ATCC 35198]
Length = 454
Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 195/468 (41%), Positives = 286/468 (61%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F +N+++D+G+
Sbjct: 7 IVAQATPPGRGGVGILRVSGPKAALVAQTVLGKLPK---PRYADYLPFRNDDNSVLDQGI 63
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F P+S+TGEDV+EL GHGGP+IL +LL L+I G+R+A PGEF++RAFLN+K
Sbjct: 64 ALFFPNPNSFTGEDVLELQGHGGPVILDLLLKRILQI---PGVRIANPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AA+SA+ SL G FS +N +++ L +LR +E + DFP+E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSAINSLQGAFSSHVNEMVESLTHLRIYVEAAIDFPDEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L + +L + Q ++ +L+R G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDF-LSDGIIEGKLNAVIAELDDVRAQARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWKE 292
Query: 308 LKNSDIIIYVQDARYDKHT---DFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D+ T D + + P +PV + NK D +G I + N
Sbjct: 293 IEQADRVLFMVDSTTTDATTPEDIWPEFMARLPNTLPVTVIRNKSDLTGENAEITAQGNY 352
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA +GI LLR+ L + + E +LAR RH+ +LN A +L
Sbjct: 353 PMIRLSARDGMGIELLRDHLKEAMGFNSNTEGG-FLARRRHLQALNTAAEHLQQG----- 406
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + K+ EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 407 HEQLVYAKSGELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|359298602|ref|ZP_09184441.1| tRNA modification GTPase TrmE [Haemophilus [parainfluenzae] CCUG
13788]
gi|402304983|ref|ZP_10824045.1| tRNA modification GTPase TrmE [Haemophilus sputorum HK 2154]
gi|400377044|gb|EJP29928.1| tRNA modification GTPase TrmE [Haemophilus sputorum HK 2154]
Length = 452
Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 202/471 (42%), Positives = 287/471 (60%), Gaps = 29/471 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ ATP GRGGVGI+R+SG + E V +T L PR A Y F N +D+G+
Sbjct: 5 IVAQATPIGRGGVGILRVSGPLASKVAEAVLGRT---LTPRMANYLPFKDSNGETLDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++FKAP+S+TGEDV+EL GHGG +IL +LL LE+ G+R+A GEF+++AFLN+K
Sbjct: 62 ALFFKAPNSFTGEDVLELQGHGGQVILDILLKRILEVE---GVRIARAGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AA+SA+ SL G+FS IN L+D +I LRT +E + DFP+E
Sbjct: 119 LDLAQAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEE 178
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L L I ++L + Q+ K+ A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 179 IDF-LADGKIEGHLNDIIQQLNGVRQEAKQGAILREGMKVVIAGRPNAGKSSLLNALAGR 237
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI R W E
Sbjct: 238 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIARAWEE 290
Query: 308 LKNSDIIIYVQDARYDKHTDFD---KKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
+ +D ++ + D+ K DF + + P N+PV + NK+D SG + + N
Sbjct: 291 IAQADQVLLMIDSTEQKVDDFKAEWAEFLAKLPPNMPVTVIRNKVDLSGEPEGLEQLENF 350
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP---YLARERHIHSLNEANYYLSCAIK 421
I LSA ++G++LLR L +K+ +SS +LAR RH+ +L EA +L+
Sbjct: 351 TLIRLSAQTKVGVDLLREHL----KKSMGYQSSTEGGFLARRRHLQALEEAAEHLARGHV 406
Query: 422 IINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ Q EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 407 QLTQFFAG-----ELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 452
>gi|421538958|ref|ZP_15985130.1| tRNA modification GTPase TrmE [Neisseria meningitidis 93003]
gi|421562016|ref|ZP_16007853.1| tRNA modification GTPase TrmE [Neisseria meningitidis NM2657]
gi|254671681|emb|CBA09438.1| putative tRNA modification GTPase [Neisseria meningitidis alpha153]
gi|402315665|gb|EJU51228.1| tRNA modification GTPase TrmE [Neisseria meningitidis 93003]
gi|402336401|gb|EJU71662.1| tRNA modification GTPase TrmE [Neisseria meningitidis NM2657]
Length = 448
Score = 362 bits (928), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 205/473 (43%), Positives = 283/473 (59%), Gaps = 27/473 (5%)
Query: 2 LTKNSPIIG-IATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
++ N P I +AT GRGGVG+IR+SGKNL + E +C KT K PR ATY+ F +
Sbjct: 1 MSDNVPTIAAVATASGRGGVGVIRISGKNLLPMAEALCGKTPK---PRVATYADFTDADG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID GL+++F AP S+TGEDVIEL GHGGP+++ MLL+ CLE+G RLA PGEFTK
Sbjct: 58 QAIDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLELGA----RLAEPGEFTK 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q E + DLI+AS+ SAA+ A+ SL G FS+ I+ L++ LI LR L+E +
Sbjct: 114 RAFLNDKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEAT 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE+ + L D +L +++ + ++ ++ A++R GLNVVL+G PNVGKSSL
Sbjct: 174 LDFPEEDIDF-LEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G +VAIVT IAGTTRD + + I I+ I DTAG +++ + VE+IG
Sbjct: 233 LNALAGDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAG-------LRETDDVVERIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IER+ + +D+ + + D R + + + I+ P + I + +K D H
Sbjct: 286 IERSRKAVSEADVALVLVDPR-EGLNEKTRAILDALPPELKRIEIHSKSDLHAHAAGGFG 344
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP-YLARERHIHSLNEANYYLSCA 419
I LSA G++ L+ TLL E ES +LAR RH+++L A LS A
Sbjct: 345 TGAETVIALSAKTGDGLDALKRTLLR--EAGWQGESEGLFLARTRHVNALKAAQEELSLA 402
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
N +EL AE LR I G+ T +DLL IFS+FCIGK
Sbjct: 403 ALCGNH-------QIELFAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448
>gi|325577780|ref|ZP_08148055.1| tRNA modification GTPase TrmE [Haemophilus parainfluenzae ATCC
33392]
gi|325160525|gb|EGC72651.1| tRNA modification GTPase TrmE [Haemophilus parainfluenzae ATCC
33392]
Length = 452
Score = 362 bits (928), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 201/475 (42%), Positives = 288/475 (60%), Gaps = 37/475 (7%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + + V K K PR A Y F + ++D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPKALEVAQAVLGKCPK---PRMADYLPFKDADGTVLDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK+P+S+TGEDV+EL GHGG ++L +LL L++ G+RLA PGEF+++AFLN+K
Sbjct: 62 ALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQLD---GVRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AA+SA+ SL G+FS +N L+D +I LRT +E S DFP+E
Sbjct: 119 LDLAQAEAIADLIDATSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEASIDFPDEE 178
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQ-------GKKRALIRNGLNVVLIGQPNVGKSSL 240
+ + + KI+ KL +II Q K+ +++R G+ VV+ G+PN GKSSL
Sbjct: 179 IDFLADG--------KIEAKLREIINQLDLVRSEAKQGSILREGMKVVIAGRPNAGKSSL 230
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IG
Sbjct: 231 LNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREATDEVERIG 283
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
I R W E++ +D II + D+ +K + + P N+PV V NK+D SG
Sbjct: 284 ISRAWTEIEQADRIILMLDSSDPDSQHIEKVRSEFLSKLPNNMPVTIVRNKVDLSGEAVG 343
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
+ +N I LSA G++LLR L + QT +LAR RH+ +L +A +L
Sbjct: 344 LKEENGTTTICLSAQTHQGVDLLREHLKQAM-GFQTGMEGGFLARRRHLDALEKAAEHLQ 402
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
I ++ +E F EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 403 --IGLVQLTE--FHAG-ELLAEELRLVQANLSEITGQFTSDDLLGNIFSSFCIGK 452
>gi|335041641|ref|ZP_08534668.1| putative GTPase [Methylophaga aminisulfidivorans MP]
gi|333788255|gb|EGL54137.1| putative GTPase [Methylophaga aminisulfidivorans MP]
Length = 447
Score = 362 bits (928), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 198/466 (42%), Positives = 273/466 (58%), Gaps = 23/466 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ +AT PGRGGVG++R+SGK IV +C K PR+A ++ F +N++ID+G+
Sbjct: 4 IVAVATAPGRGGVGVVRISGKKSAEIVAAICGKLPT---PRYAKFTHFRDVDNDVIDEGI 60
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P S+TGEDV+EL GHG P+++ L +E+G R+A PGEF++RAFLNNK
Sbjct: 61 ALYFPGPASFTGEDVVELQGHGSPLVMDRLCQRAVELGA----RMARPGEFSERAFLNNK 116
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EA+ DLI +STE AA+SAM SL G FS IN L +L +LR +E S DF +E
Sbjct: 117 MDLAQAEAVADLIESSTEQAARSAMRSLQGDFSNRINDFLQELTHLRMYVEASIDFSDEE 176
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L + +L + K L I K+ L+R G++VVL GQPN GKSSL N L G
Sbjct: 177 IDF-LAEAQVDVQLQDLLKTLDGITGSAKQGRLLREGISVVLAGQPNAGKSSLHNQLAGH 235
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
D AIVT +AGTTRD + + I + +I+DTAG+ D I VE GI RT E
Sbjct: 236 DAAIVTDVAGTTRDVLREQIHLGGLPLRISDTAGLHDATDDI------VELEGIRRTQNE 289
Query: 308 LKNSD-IIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIAN 366
L +D I++ + D++ T+ DKKI+ P N P+ + NKID SGHQ + +N
Sbjct: 290 LAQADHILLLIDDSK--GLTEQDKKILAELPANKPLTIIRNKIDKSGHQTGLTEENGYPT 347
Query: 367 IYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQS 426
+YLSA G+ LL+ L + E ++AR RH+ +L A + ++
Sbjct: 348 LYLSAKSGDGLELLQQHLYQAV-GFHPEEEGVFIARRRHLDALARARQSIVNGYDCLSGM 406
Query: 427 EKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
EL+AE+LR + L I G TT DLLD+IFS FCIGK
Sbjct: 407 GAG-----ELLAEELRLAQQALGEITGTFTTEDLLDHIFSSFCIGK 447
>gi|417842579|ref|ZP_12488661.1| tRNA modification GTPase mnmE [Haemophilus haemolyticus M21127]
gi|341951417|gb|EGT77989.1| tRNA modification GTPase mnmE [Haemophilus haemolyticus M21127]
Length = 452
Score = 361 bits (927), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 202/468 (43%), Positives = 287/468 (61%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + + V K K PR A Y F + ++D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPLATEVAQAVLGKCPK---PRMADYLPFKDADGTVLDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK+P+S+TGEDV+EL GHGG ++L +LL L+I G+RLA PGEF+++AFLN+K
Sbjct: 62 ALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQID---GIRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AA+SA+ SL G+FSK +N L+D +I LRT +E S DFP+E
Sbjct: 119 LDLAQAEAIADLIDATSEQAARSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE 178
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L + L I +L + + K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 179 IDF-LADGKIESNLCGIINQLDDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGR 237
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D +EVE+IGI R W E
Sbjct: 238 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT-------DEVERIGISRAWTE 290
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D II + D+ + D K + + P +PV V NKID +G Q + + ++
Sbjct: 291 IEQADRIILMLDSSDPESADLSKVRSEFLAKLPTTLPVTIVRNKIDLNGEQASESEQDGY 350
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA GI LLR+ L + QT +LAR RH+ +L +A +L I ++
Sbjct: 351 QIISLSAQTHDGIQLLRDHLKQAM-GFQTGMEGGFLARRRHLDALEKAAEHLQ--IGLVQ 407
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+E F EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 408 LTE--FHAG-ELLAEELRLVQTYLSEITGEFTSDDLLGNIFSSFCIGK 452
>gi|227354815|ref|ZP_03839232.1| tRNA modification GTPase [Proteus mirabilis ATCC 29906]
gi|425070466|ref|ZP_18473579.1| tRNA modification GTPase mnmE [Proteus mirabilis WGLW6]
gi|425070780|ref|ZP_18473886.1| tRNA modification GTPase mnmE [Proteus mirabilis WGLW4]
gi|227165133|gb|EEI49964.1| tRNA modification GTPase [Proteus mirabilis ATCC 29906]
gi|404594763|gb|EKA95319.1| tRNA modification GTPase mnmE [Proteus mirabilis WGLW6]
gi|404599605|gb|EKB00058.1| tRNA modification GTPase mnmE [Proteus mirabilis WGLW4]
Length = 454
Score = 361 bits (927), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 195/468 (41%), Positives = 289/468 (61%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ ATPPGRGGVGI+R+SG + + + K K PR+A Y F ++N+++D+G+
Sbjct: 7 IVAQATPPGRGGVGILRVSGPKAAVVAQTILGKVPK---PRYADYLPFRNEDNSVLDQGI 63
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F P+S+TGEDV+EL GHGGPIIL +LL L+I G+R+A PGEF++RAFLN+K
Sbjct: 64 ALFFPNPNSFTGEDVLELQGHGGPIILDLLLKRILQI---PGIRIAKPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AA+SA+ SL G FS IN +++ L NLR +E + DFP+E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSAINSLQGAFSSHINEMVESLTNLRIYVEAAIDFPDEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L + +L + Q ++ +L+R G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDF-LSDGVIEGKLNTVISQLDDVRAQARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWQE 292
Query: 308 LKNSDIIIYVQDARYDKHTDFD---KKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D+ + T + + + P +PV + NK D +G I + +
Sbjct: 293 IEQADRVLFMVDSTTTEATTPEEIWPEFMARLPSTLPVTVIRNKSDLTGEPAEITSQGDY 352
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA +GI LLR+ L + + E +LAR RH+ +LN A +L +
Sbjct: 353 PMIRLSARDGMGIELLRSHLKEAMGFNSNTEGG-FLARRRHLQALNTAAEHLQQGYQ--- 408
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + K+ EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 409 --QLVYAKSGELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|145590262|ref|YP_001156859.1| tRNA modification GTPase TrmE [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|205415793|sp|A4T0N1.1|MNME_POLSQ RecName: Full=tRNA modification GTPase MnmE
gi|145048668|gb|ABP35295.1| tRNA modification GTPase trmE [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
Length = 457
Score = 361 bits (927), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 195/473 (41%), Positives = 285/473 (60%), Gaps = 17/473 (3%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M+T+ PII +AT PG+ GVG++R+SG+ L +VE + ++ L PR AT +F +N
Sbjct: 1 MMTRKVPIIAVATAPGKAGVGVVRISGQGLGELVETLFHRS---LAPRQATLLTFCDADN 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID+ L IYF P S+TGEDV+EL HGGP +L +++ CLE+GK++GL +A PGEFT
Sbjct: 58 QPIDQLLAIYFVGPASFTGEDVLELQCHGGPQLLELVMKRCLELGKALGLVIAEPGEFTL 117
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RA+LNNK+DL Q EAI DLI+A +E+A + A SL G FS+ IN L++++ LR L+E +
Sbjct: 118 RAYLNNKVDLAQAEAIADLIDAQSEAAVRGAARSLQGSFSEDINGLIEEITQLRILVEST 177
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE E + N L +KKKL + K+ ++R+G+ +VL G PNVGKSSL
Sbjct: 178 LDFPEEEIEFLENAQ-ARERLAAVKKKLEALQAGAKQGKILRDGIQLVLAGAPNVGKSSL 236
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N L G +VAIVT IAGTTRD++ ++IQI I DTAG ++K ++EVE G
Sbjct: 237 LNRLAGEEVAIVTPIAGTTRDRVKESIQIEGVPMHIIDTAG-------LRKTVDEVEAKG 289
Query: 301 IERTWVELKNSDIIIYVQDARYDK-HTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNIN 359
IERTW ++ +D++I++ + H ++I+ P P++ V NK D ++
Sbjct: 290 IERTWEAIRLADLVIFLGAPNAEPGHESLREEILGALPAKCPILDVINKSDLIEGGLAVS 349
Query: 360 YKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCA 419
N + + +SA GI+ L+ +L ++ E + ++R RH+ L A +++ +
Sbjct: 350 SSNEASPLLISAKTGAGIDALKQKILHVVGWNGAQEGA-IVSRRRHLDCLERAAEHIAKS 408
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q N +LEL AE+L L I GK +DLL IFSQFCIGK
Sbjct: 409 ----EQFAANGNNSLELFAEELFLAQNHLGQITGKLLPDDLLGKIFSQFCIGK 457
>gi|253991869|ref|YP_003043225.1| trna modification gtpase trme [Photorhabdus asymbiotica]
gi|253783319|emb|CAQ86484.1| trna modification gtpase trme [Photorhabdus asymbiotica]
Length = 454
Score = 361 bits (926), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 194/468 (41%), Positives = 285/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ ATPPGRGGVGI+R+SG + E+V K K PR+A Y F +N ++D+G+
Sbjct: 7 IVAQATPPGRGGVGILRVSGPKAAQVAEVVLGKLPK---PRYADYLPFRDVDNRVLDQGI 63
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
IYF P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++RAFLN+K
Sbjct: 64 AIYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIANPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AA+SAM SL G FS ++ +++ L +LR +E + DFP+E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSAMNSLQGAFSTQVHQMVEALTHLRIYVEAAIDFPDEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ L + KL ++ Q ++ +L+R G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDF-LSDGKIEANLDNVIAKLDRVRSQARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
D AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E
Sbjct: 240 DAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWQE 292
Query: 308 LKNSDIIIYVQDARYD---KHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D+ + + + + P ++P+ V NK D + + +I
Sbjct: 293 IEQADRVLFMVDSTTTDAVEPVEIWPEFMARLPESLPITVVRNKTDMTNEETSITEVRGY 352
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
+ I LSA GI+LLR+ L + + E +LAR RH+ +LN A +L
Sbjct: 353 SLIRLSAHSGEGIDLLRDHLKETMGFNSNTEGG-FLARRRHLQALNTAAEHLQQG----- 406
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ ++ EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 407 HEQLVVARSGELLAEELRLAQQTLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|270158409|ref|ZP_06187066.1| tRNA modification GTPase TrmE [Legionella longbeachae D-4968]
gi|289166752|ref|YP_003456890.1| GTPase [Legionella longbeachae NSW150]
gi|269990434|gb|EEZ96688.1| tRNA modification GTPase TrmE [Legionella longbeachae D-4968]
gi|288859925|emb|CBJ13911.1| GTPase [Legionella longbeachae NSW150]
Length = 452
Score = 361 bits (926), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 201/472 (42%), Positives = 291/472 (61%), Gaps = 32/472 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFF-CKNNN----- 61
I+ +ATPPGRGGVGI+RLSG +SI + K L+PR AT+ SF+ C ++N
Sbjct: 6 IVAVATPPGRGGVGILRLSGPQAYSIA--ISLNGNKTLQPRLATFCSFYSCSHSNEEEIS 63
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G++IYFK PHS+TGEDV+E+ HG P++L ML C+ +G RLA PGEF++R
Sbjct: 64 VVDQGIMIYFKQPHSFTGEDVVEIQAHGSPVVLDMLTKECVHLGA----RLARPGEFSER 119
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+K+DL Q EAI DLI AS+++AA+ A SL G+FS I L +++I+LR +E +
Sbjct: 120 AFLNDKIDLTQAEAIADLIQASSQTAARMAFKSLQGEFSSKIAQLNEQIIHLRLYVEAAI 179
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFPEE + LN L + KL I Q + ++R GL+VV+ G+PN GKS+L
Sbjct: 180 DFPEEEIDF-LNDGKVAQLLQNLLDKLDAIRSQANQGVILREGLSVVIAGRPNAGKSTLI 238
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N L G DVAIVT IAGTTRD + + I ++ I DTAG+ D + + VEK GI
Sbjct: 239 NCLAGRDVAIVTEIAGTTRDVMREHILLDDIPLHIIDTAGLRDSD-------DIVEKEGI 291
Query: 302 ERTWVELKNSDIIIYVQDAR-YDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
+R W ELK +D ++ V D + H D ++I + P +P+I ++NKID G ++
Sbjct: 292 KRAWEELKKADCVLLVVDINDLELHHDLSQEIRTSLPAEVPIITLFNKIDTLG--RSAQV 349
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
+N+ ++YL A G++ L+ L+ + Q E +LAR RH+ +L+EA L
Sbjct: 350 ENH--SVYLCAKSGEGVDALKQ-LIKQVVGYQPNEGQ-FLARRRHLRALDEAKDIL---- 401
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ Q + + EL+AEDLR H+ L I G+ +++DLL IFS FCIGK
Sbjct: 402 -LVGQQQLAEHRAGELLAEDLRLAHQTLCEITGEFSSDDLLGRIFSSFCIGK 452
>gi|197286945|ref|YP_002152817.1| tRNA modification GTPase TrmE [Proteus mirabilis HI4320]
gi|254811490|sp|B4F0U0.1|MNME_PROMH RecName: Full=tRNA modification GTPase MnmE
gi|194684432|emb|CAR46143.1| probable tRNA modification GTPase [Proteus mirabilis HI4320]
Length = 454
Score = 361 bits (926), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 195/468 (41%), Positives = 289/468 (61%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ ATPPGRGGVGI+R+SG + + + K K PR+A Y F ++N+++D+G+
Sbjct: 7 IVAQATPPGRGGVGILRVSGPKAAVVAQTILGKVPK---PRYADYLPFRNEDNSVLDQGI 63
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F P+S+TGEDV+EL GHGGPIIL +LL L+I G+R+A PGEF++RAFLN+K
Sbjct: 64 ALFFPNPNSFTGEDVLELQGHGGPIILDLLLKRILQI---PGIRIAKPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AA+SA+ SL G FS IN +++ L NLR +E + DFP+E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSAINSLQGAFSSHINEMVESLTNLRIYVEAAIDFPDEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L + +L + Q ++ +L+R G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDF-LSDGVIEGKLNTVISQLDDVRTQARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWQE 292
Query: 308 LKNSDIIIYVQDARYDKHTDFD---KKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D+ + T + + + P +PV + NK D +G I + +
Sbjct: 293 IEQADRVLFMVDSTTTEATTPEEIWPEFMARLPSTLPVTVIRNKSDLTGEPAEITSQGDY 352
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA +GI LLR+ L + + E +LAR RH+ +LN A +L +
Sbjct: 353 PMIRLSARDGMGIELLRSHLKEAMGFNSNTEGG-FLARRRHLQALNTAAEHLQQGYQ--- 408
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + K+ EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 409 --QLVYAKSGELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|333376479|ref|ZP_08468255.1| tRNA modification GTPase TrmE [Kingella kingae ATCC 23330]
gi|332967862|gb|EGK06958.1| tRNA modification GTPase TrmE [Kingella kingae ATCC 23330]
Length = 459
Score = 361 bits (926), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 208/467 (44%), Positives = 285/467 (61%), Gaps = 36/467 (7%)
Query: 16 GRGGVGIIRLSGKNLWSIVE-IVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAP 74
GRGGVG+IR+SGK+L + I KT K PR A Y+ F ++ N ID GL++YF AP
Sbjct: 19 GRGGVGVIRISGKDLLPFAQHITGGKTPK---PRTALYTDFVDQHGNAIDNGLLLYFAAP 75
Query: 75 HSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVE 134
S+TGEDVIEL GHGG I+L MLL CLE+G R+A GEFTKRAFLNNKLDL Q E
Sbjct: 76 ASFTGEDVIELQGHGGQIVLQMLLQRCLELGA----RIAEAGEFTKRAFLNNKLDLAQAE 131
Query: 135 AIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELILNK 194
++ DLI+AS+++AA+ A+ SL G FS+ I+ L+D LI LR L+E + DFPEE + L
Sbjct: 132 SVADLIDASSQAAARMAVRSLKGAFSQHIHSLVDDLITLRMLVEATLDFPEEEIDF-LEA 190
Query: 195 NDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTS 254
D +L +++ +L ++QQ + A++R G+NVVL+G PNVGKSSL N+L G DVAIVT+
Sbjct: 191 ADAKGKLARLQAQLSTVLQQAGQGAILREGMNVVLVGAPNVGKSSLLNALAGDDVAIVTN 250
Query: 255 IAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDII 314
IAGTTRD + + I ++ ITDTAG +++ + VEKIGIER+ ++N+D+
Sbjct: 251 IAGTTRDTVREQITLDGVPIHITDTAG-------LRQTDDVVEKIGIERSEKAVQNADVA 303
Query: 315 IYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKR 374
+ + D + + I+ P ++ I V NKID ++ + N A +LS +
Sbjct: 304 LILIDP-AEGINPTTQAILDKLPTSLQRIEVHNKIDL--RDESASLHNESAGCFLSGADV 360
Query: 375 I---------GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQ 425
+ G++LL+ TLLD I Q +LAR RHIH+L A L A N
Sbjct: 361 LIKLSAKTGAGLDLLKQTLLDAI-GWQGESEGLFLARTRHIHALQAAQVELENAALCSN- 418
Query: 426 SEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
LEL+AE LR + I G+ T +DLL IFS+FCIGK
Sbjct: 419 ------NQLELLAEHLRLAQVACNEITGEFTADDLLGVIFSRFCIGK 459
>gi|417957406|ref|ZP_12600329.1| tRNA modification GTPase TrmE [Neisseria weaveri ATCC 51223]
gi|343968413|gb|EGV36642.1| tRNA modification GTPase TrmE [Neisseria weaveri ATCC 51223]
Length = 455
Score = 360 bits (925), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 206/478 (43%), Positives = 290/478 (60%), Gaps = 30/478 (6%)
Query: 2 LTKNSPIIG-IATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
++ SP I IAT PGRGGVG++R+SGKNL + + + K KPR A Y+ F +
Sbjct: 1 MSAPSPTIAAIATAPGRGGVGVVRISGKNLLPLAQQISGG--KTPKPRVALYTDFLDSDG 58
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID GL++YF AP S+TGEDVIEL GHGGP+++ MLL CL++G R+A PGEFTK
Sbjct: 59 QAIDNGLLLYFSAPASFTGEDVIELQGHGGPVVMDMLLQRCLQLGA----RMAEPGEFTK 114
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLNNKLDL Q E++ DLI+AS+ SAA+ A+ SL G FS+ I+ L+D+LI LR L+E +
Sbjct: 115 RAFLNNKLDLAQAESVADLIDASSRSAARMAVRSLKGAFSQHIHALVDELITLRMLVEAT 174
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE+ + L D +L +++ +L ++ ++ A++R G+NVVL+G PNVGKSSL
Sbjct: 175 LDFPEEDIDF-LEAADARGKLAELQGRLKTVLVSAEQGAILREGMNVVLVGAPNVGKSSL 233
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G D+AIVT IAGTTRD + + I ++ I DTAG +++ + VEKIG
Sbjct: 234 LNALAGDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAG-------LRETDDVVEKIG 286
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGH-----Q 355
IER+ ++ +D+ + + D R + + I+ + P N+ I + NK D +G
Sbjct: 287 IERSQKAVQEADVALILIDPREGINAKT-QTILDSLPENLKKIEIHNKTDLTGETVEMLS 345
Query: 356 KNINYKNNIAN-IYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+N + I LSA G++LL+ LL I Q S +LAR RH+ +L+ A
Sbjct: 346 DGLNTASGADTLIRLSAKTGEGLDLLKQALLKEI-GWQGESESLFLARSRHLTALSAAEA 404
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L A N +EL+AE LR S I G+ T +DLL IFS+FCIGK
Sbjct: 405 ELENAALCGN-------NQIELLAEHLRLAQTACSEITGEFTADDLLGVIFSRFCIGK 455
>gi|410863694|ref|YP_006978928.1| tRNA modification GTPase TrmE [Alteromonas macleodii AltDE1]
gi|410820956|gb|AFV87573.1| tRNA modification GTPase TrmE [Alteromonas macleodii AltDE1]
Length = 462
Score = 360 bits (925), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 196/472 (41%), Positives = 288/472 (61%), Gaps = 27/472 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I AT PGRGGVGI+R+SG +I E + +L PR ATY+ F N ++ID+G+
Sbjct: 11 ITAQATAPGRGGVGIVRVSGPKAKAIAEALVPS---ELTPRLATYTPFVDANKSVIDQGI 67
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++FK P+S+TGEDV+EL GHGG +++ ML+ + L G + RLA PGEF+++AFLN+K
Sbjct: 68 ALFFKGPNSFTGEDVLELQGHGGQVVMDMLIDAVLATGHA---RLASPGEFSEQAFLNDK 124
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS++ AA+SA+ SL G+FS I L D++++LR +E + DFPEE
Sbjct: 125 LDLAQAEAIADLIDASSKQAARSALRSLQGEFSTQIQTLSDQIVHLRMYVEAAIDFPEEE 184
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L I + L K+ Q K+ L+R G+ VV+ G+PN GKSSL N+L G
Sbjct: 185 IDF-LSDGKVSGDLSTIMQSLTKVRDQAKQGTLLREGMQVVIAGRPNAGKSSLLNALAGR 243
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
D AIVT IAGTTRD + + I I+ I DTAG ++++ ++VE+IGIER W
Sbjct: 244 DSAIVTDIAGTTRDVLKEHIHIDGMPVHIIDTAG-------LRESPDKVEQIGIERAWQA 296
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSG---HQKNIN-Y 360
+ +D +++V D+ D + + P IPV V NK D S Q ++N
Sbjct: 297 INEADHVLFVVDSTATSVIDPYEIWPEFMARLPQGIPVTVVRNKADLSTLSIGQSSVNTQ 356
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
+ +I+ I LSA + G++ L+ L + T E ++AR RHI +L++A Y+S
Sbjct: 357 QGDISVINLSAKEGSGVDTLKAHLAKTMGFDTTTEGQ-FIARRRHIDALDQAYSYVSTGE 415
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ ++ + EL+AE+LR H+ L I G+ T++DLL IFS FCIGK
Sbjct: 416 QQLHDAMAG-----ELLAEELRLAHQALCEITGEFTSDDLLGKIFSSFCIGK 462
>gi|386266263|ref|YP_005829755.1| tRNA modification GTPase mnmE [Haemophilus influenzae R2846]
gi|309973499|gb|ADO96700.1| tRNA modification GTPase mnmE [Haemophilus influenzae R2846]
Length = 461
Score = 360 bits (925), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 197/468 (42%), Positives = 284/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + + + K K PR A Y F + I+D+G+
Sbjct: 14 IVAQATAPGRGGIGILRVSGPLATKVAQAILGKCPK---PRMADYLPFKDADGTILDQGI 70
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK+P+S+TGEDV+EL GHGG ++L +LL L+I G+RLA PGEF+++AFLN+K
Sbjct: 71 ALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQID---GIRLARPGEFSEQAFLNDK 127
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AA+SA+ SL G+FSK +N L+D +I LRT +E S DFP+E
Sbjct: 128 LDLAQAEAIADLIDATSEQAARSALKSLQGEFSKKVNTLVDSVIYLRTYVEASIDFPDEE 187
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + N L I +L + + K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 188 IDFLADGKIEAN-LRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGR 246
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D +EVE+IGI R W E
Sbjct: 247 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT-------DEVERIGISRAWTE 299
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D II + D+ + D K + + P +PV V NKID +G Q + + +
Sbjct: 300 IEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGY 359
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G+ LLR L + +E +LAR RH+ +L++A +L + +
Sbjct: 360 QMISLSAQTHDGVKLLREHLKQAMGFQAGMEGG-FLARRRHLDALDKAAEHLQIGLVQLT 418
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 419 EFHAG-----ELLAEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 461
>gi|419839656|ref|ZP_14363062.1| tRNA modification GTPase TrmE [Haemophilus haemolyticus HK386]
gi|386909234|gb|EIJ73910.1| tRNA modification GTPase TrmE [Haemophilus haemolyticus HK386]
Length = 452
Score = 360 bits (924), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 198/468 (42%), Positives = 285/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + + V K K PR A Y F + ++D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPLATEVAQAVLGKCPK---PRMADYLPFKDADGTVLDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK+P+S+TGEDV+EL GHGG ++L +LL L+I G+RLA PGEF+++AFLN+K
Sbjct: 62 ALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQID---GIRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AA+SA+ SL G+FSK +N L+D +I LRT +E S DFP+E
Sbjct: 119 LDLAQAEAIADLIDATSEQAARSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE 178
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ +++ N L I +L + + K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 179 IDFLVDGKIEAN-LRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGR 237
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D +EVE+IGI R W E
Sbjct: 238 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT-------DEVERIGISRAWTE 290
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D II + D+ + D K + + P +PV V NKID + Q + + +
Sbjct: 291 IEQADRIILMLDSSDPESADLSKVRSEFLAKLPTTLPVTIVRNKIDLNDEQASQSEQGGY 350
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
A I LSA G+ LLR L ++ QT +LAR RH+ +L +A +L + +
Sbjct: 351 AIISLSAQTHDGVQLLREHLKQVM-GFQTGMEGGFLARRRHLDALEKAAEHLQIGLVQLT 409
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 410 EFHAG-----ELLAEELRLVQTYLSEITGEFTSDDLLGNIFSSFCIGK 452
>gi|319639448|ref|ZP_07994198.1| tRNA modification GTPase mnmE [Neisseria mucosa C102]
gi|317399343|gb|EFV80014.1| tRNA modification GTPase mnmE [Neisseria mucosa C102]
Length = 454
Score = 360 bits (924), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 207/478 (43%), Positives = 289/478 (60%), Gaps = 30/478 (6%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M I IAT PGRGGVG+IRLSGKNL +V+ + K KPR A Y+ F +
Sbjct: 1 MSASQPTIAAIATAPGRGGVGVIRLSGKNLLPLVQTLSGG--KTPKPRTALYTDFLGGDG 58
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID G+++YF AP S+TGEDVIEL GHGGP+++ MLLS CLE+G R+A PGEFTK
Sbjct: 59 QPIDNGILLYFAAPASFTGEDVIELQGHGGPVVMDMLLSRCLELGA----RMAEPGEFTK 114
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLNNKLDL Q E++ DLI+AS++SAA+ A+ SL G FS+ I+ L+D LI LR L+E +
Sbjct: 115 RAFLNNKLDLAQAESVADLIDASSKSAARMALRSLKGAFSQHIHELVDDLITLRMLVEAT 174
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE+ + L D +L ++ +L ++ ++ A++R G+NVVL+G PNVGKSSL
Sbjct: 175 LDFPEEDIDF-LEAADARGKLQALQGRLKTVLASAEQGAILREGMNVVLVGAPNVGKSSL 233
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G D+AIVT IAGTTRD + + I ++ I DTAG +++ + VE+IG
Sbjct: 234 LNALAGDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAG-------LRETDDVVEQIG 286
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IER+ + +D+ + + D R + + I+ + P + I + NK D +G +
Sbjct: 287 IERSRKAVSEADVALILIDPREGVNAKT-QAILNSLPEGLKKIEIHNKADLTGEPVAVR- 344
Query: 361 KNNIAN------IYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ +A I LSA G++LL++ LL + Q S +LAR RH+++L+EA
Sbjct: 345 SDGLAQTGADTVISLSAKTGAGLDLLKHALLQEV-GWQGESESLFLARSRHLNALHEAEA 403
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L A N +EL AE LR S I G+ T +DLL IFS+FCIGK
Sbjct: 404 ELENAALCDN-------NQIELFAEHLRLAQNACSEITGEFTADDLLGVIFSRFCIGK 454
>gi|290477349|ref|YP_003470270.1| GTPase involved in tRNA modification and in thiophene and furan
oxidation [Xenorhabdus bovienii SS-2004]
gi|289176703|emb|CBJ83512.1| GTPase involved in tRNA modification and in thiophene and furan
oxidation [Xenorhabdus bovienii SS-2004]
Length = 454
Score = 360 bits (924), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 192/468 (41%), Positives = 286/468 (61%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ ATPPGRGGVGI+R+SG + E+V K K PR+A Y F + ++D+G+
Sbjct: 7 IVAQATPPGRGGVGILRISGPKAAEVAEVVLGKLPK---PRYADYLPFRDVDGTVLDQGI 63
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P+S+TGEDV+EL GHGGP+IL +LL L I +R+A PGEF++RAFLN+K
Sbjct: 64 ALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIS---AVRIANPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AA+SAM SL G FS ++ +++ L NLR +E + DFP+E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSAMNSLQGTFSHQVHQMVEALTNLRIYVEAAIDFPDEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ L ++ ++L + Q ++ +L+R G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDF-LSDGKIEARLDEVIEELDHVRSQARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWQE 292
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D+ + K + + P ++PV + NK D +G + + +
Sbjct: 293 IEQADRVLFMVDSTTTDAVEPAKIWPEFMAKLPASLPVTVIRNKTDMTGEETGVLEVSGY 352
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
+ I LSA + GI+LLR+ L + + E +LAR RH+ +LN A +L
Sbjct: 353 SLIRLSAREGKGIDLLRDHLKEAMGFNSNTEGG-FLARRRHLQALNTAAEHLQE-----G 406
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ F ++ EL+AE+LR + L I G+ T++DLL IFS FCIGK
Sbjct: 407 HQQLVFARSGELLAEELRLAQQVLCEITGEFTSDDLLGRIFSSFCIGK 454
>gi|421567126|ref|ZP_16012862.1| tRNA modification GTPase TrmE [Neisseria meningitidis NM3001]
gi|402344137|gb|EJU79278.1| tRNA modification GTPase TrmE [Neisseria meningitidis NM3001]
Length = 448
Score = 360 bits (924), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 204/473 (43%), Positives = 284/473 (60%), Gaps = 27/473 (5%)
Query: 2 LTKNSPIIG-IATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
++ N P I +AT PGRGGVG+IR+SGKNL + + +C KT K PR ATY+ F +
Sbjct: 1 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKTPK---PRTATYADFTDADG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID GL+++F AP S+TGEDVIEL GHGGP+++ MLL+ CLE+G RLA PGEFTK
Sbjct: 58 QAIDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLELGA----RLAEPGEFTK 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q E + DLI+AS+ SAA+ A+ SL G FS+ I+ L++ LI LR L+E +
Sbjct: 114 RAFLNDKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEAT 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE+ + L D +L +++ + ++ ++ A++R GLNVVL+G PNVGKSSL
Sbjct: 174 LDFPEEDIDF-LEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G +VAIVT IAGTTRD + + I I+ I DTAG +++ + VE+IG
Sbjct: 233 LNALAGDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAG-------LRETDDVVERIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IER+ + +D+ + + D R + + + I+ P + I + +K D
Sbjct: 286 IERSRKAVSEADVALVLVDPR-EGLNEKTRAILDALPPELKRIEIHSKSDLHTSAAAAFE 344
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP-YLARERHIHSLNEANYYLSCA 419
I LSA G++ L+ TLL E ES +LAR RH+++L A LS A
Sbjct: 345 TGADTVIPLSAKTGDGLDALKRTLLR--EAGWQGESEGLFLARTRHVNALKAAQEELSLA 402
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
N +EL+AE LR I G+ T +DLL IFS+FCIGK
Sbjct: 403 ALCGNH-------QIELLAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448
>gi|421545305|ref|ZP_15991369.1| tRNA modification GTPase TrmE [Neisseria meningitidis NM140]
gi|421547353|ref|ZP_15993391.1| tRNA modification GTPase TrmE [Neisseria meningitidis NM183]
gi|421549390|ref|ZP_15995404.1| tRNA modification GTPase TrmE [Neisseria meningitidis NM2781]
gi|421553561|ref|ZP_15999521.1| tRNA modification GTPase TrmE [Neisseria meningitidis NM576]
gi|254673772|emb|CBA09462.1| putative tRNA modification GTPase [Neisseria meningitidis alpha275]
gi|402321382|gb|EJU56857.1| tRNA modification GTPase TrmE [Neisseria meningitidis NM140]
gi|402321716|gb|EJU57189.1| tRNA modification GTPase TrmE [Neisseria meningitidis NM183]
gi|402323380|gb|EJU58824.1| tRNA modification GTPase TrmE [Neisseria meningitidis NM2781]
gi|402327873|gb|EJU63258.1| tRNA modification GTPase TrmE [Neisseria meningitidis NM576]
Length = 448
Score = 360 bits (924), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 203/472 (43%), Positives = 281/472 (59%), Gaps = 25/472 (5%)
Query: 2 LTKNSPIIG-IATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
++ N P I +AT GRGGVG+IR+SGKNL + E +C KT K PR ATY+ F +
Sbjct: 1 MSDNVPTIAAVATASGRGGVGVIRISGKNLLPMAEALCGKTPK---PRVATYADFTDADG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID GL+++F AP S+TGEDVIEL GHGGP+++ MLL+ CLE+G RLA PGEFTK
Sbjct: 58 QAIDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLELGA----RLAEPGEFTK 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q E + DLI+AS+ SAA+ A+ SL G FS+ I+ L++ LI LR L+E +
Sbjct: 114 RAFLNDKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEAT 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE+ + L D +L +++ + ++ ++ A++R GLNVVL+G PNVGKSSL
Sbjct: 174 LDFPEEDIDF-LEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G +VAIVT IAGTTRD + + I I+ I DTAG +++ + VE+IG
Sbjct: 233 LNALAGDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAG-------LRETDDVVERIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IER+ + +D+ + + D R + + + I+ P + I + +K D H
Sbjct: 286 IERSRKAVSEADVALVLVDPR-EGLNEKTRAILDALPPELKRIEIHSKSDLHAHAAGGFG 344
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
I LSA G++ L+ TLL Q +LAR RH+++L A LS A
Sbjct: 345 TGAETVIALSAKTGDGLDALKRTLLREA-GWQGEGEGLFLARTRHVNALKAAQEELSLAA 403
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
N +EL AE LR I G+ T +DLL IFS+FCIGK
Sbjct: 404 LCGNH-------QIELFAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448
>gi|260580092|ref|ZP_05847922.1| tRNA modification GTPase TrmE [Haemophilus influenzae RdAW]
gi|205371770|sp|P43730.2|MNME_HAEIN RecName: Full=tRNA modification GTPase MnmE
gi|260093376|gb|EEW77309.1| tRNA modification GTPase TrmE [Haemophilus influenzae RdAW]
Length = 452
Score = 360 bits (924), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 198/468 (42%), Positives = 284/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + + + K K PR A Y F + I+D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPLATKVAQAILGKCPK---PRMADYLPFKDADGTILDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK+P+S+TGEDV+EL GHGG ++L +LL L+I G+RLA PGEF+++AFLN+K
Sbjct: 62 ALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQID---GIRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E A +SA+ SL G+FSK +N L+D +I LRT +E S DFP+E
Sbjct: 119 LDLAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE 178
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + N L I +L + + K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 179 IDFLADGKIEAN-LRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGR 237
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D I+EVE+IGI R W E
Sbjct: 238 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRD-------AIDEVERIGISRAWTE 290
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D II + D+ + D K + + P +PV V NKID +G Q + + +
Sbjct: 291 IEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGY 350
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G+ LLR L + QT +LAR RH+ +L++A +L + +
Sbjct: 351 QMISLSAQTHDGVQLLREHLKQAM-GFQTGMEGGFLARRRHLDALDKAAEHLQIGLVQLT 409
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 410 EFHAG-----ELLAEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452
>gi|254360929|ref|ZP_04977075.1| possible tRNA modification GTP-binding protein TrmE [Mannheimia
haemolytica PHL213]
gi|261493844|ref|ZP_05990356.1| putative tRNA modification GTP-binding protein TrmE [Mannheimia
haemolytica serotype A2 str. BOVINE]
gi|261495110|ref|ZP_05991574.1| putative tRNA modification GTP-binding protein TrmE [Mannheimia
haemolytica serotype A2 str. OVINE]
gi|452743849|ref|ZP_21943705.1| tRNA modification GTPase TrmE [Mannheimia haemolytica serotype 6
str. H23]
gi|153092408|gb|EDN73471.1| possible tRNA modification GTP-binding protein TrmE [Mannheimia
haemolytica PHL213]
gi|261309180|gb|EEY10419.1| putative tRNA modification GTP-binding protein TrmE [Mannheimia
haemolytica serotype A2 str. OVINE]
gi|261310446|gb|EEY11637.1| putative tRNA modification GTP-binding protein TrmE [Mannheimia
haemolytica serotype A2 str. BOVINE]
gi|452088063|gb|EME04430.1| tRNA modification GTPase TrmE [Mannheimia haemolytica serotype 6
str. H23]
Length = 452
Score = 360 bits (924), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 200/478 (41%), Positives = 294/478 (61%), Gaps = 43/478 (8%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ ATP GRGGVGI+R+SG ++ + V KT L PR A Y F ++ ++D+G+
Sbjct: 5 IVAQATPIGRGGVGILRVSGPLAETVAQAVLGKT---LPPRIANYLPFKDEDGTVLDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++FKAP+S+TGEDV+EL GHGG +IL +LL L++ GLR+A GEF+++AFLN+K
Sbjct: 62 ALFFKAPNSFTGEDVLELQGHGGQVILDLLLKRILQVK---GLRIARAGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AA+SA+ SL G+FS IN L+D +I LRT +E + DFP+E
Sbjct: 119 LDLAQAEAIADLIDATSEQAARSALKSLQGEFSNKINALVDSVIYLRTYVEAAIDFPDEE 178
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQ-------GKKRALIRNGLNVVLIGQPNVGKSSL 240
+ + + KI+ KL +II Q K+ +++R G+ VV+ G+PN GKSSL
Sbjct: 179 IDFLADG--------KIEAKLNEIIAQLDGVRREAKQGSILREGMKVVIAGRPNAGKSSL 230
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT+IAGTTRD + + I I+ I DTAG+ D + +EVE+IG
Sbjct: 231 LNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIG 283
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
I+R W E+ +D ++ + D+ + F + + + P N+PV + NK+D SG Q+
Sbjct: 284 IQRAWEEIAQADHVLLMIDSTEQQADQFRQEWAEFLAKLPANMPVTVIRNKVDLSGEQEG 343
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP---YLARERHIHSLNEANY 414
+ ++ I LSA ++G++LLR L +K+ +SS +LAR RH+ +L A
Sbjct: 344 LIQVDDFTMIRLSAQTKVGVDLLREHL----KKSMGYQSSTEGGFLARRRHLQALETAAE 399
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L + Q EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 400 HLERGHIQLTQFLAG-----ELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 452
>gi|325267233|ref|ZP_08133896.1| tRNA modification GTPase TrmE [Kingella denitrificans ATCC 33394]
gi|324981294|gb|EGC16943.1| tRNA modification GTPase TrmE [Kingella denitrificans ATCC 33394]
Length = 458
Score = 360 bits (924), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 210/485 (43%), Positives = 292/485 (60%), Gaps = 40/485 (8%)
Query: 1 MLTKNSP--IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCK 58
ML+ +P I IAT GRGGVG++R+SGKNL + + K +PR A Y+ F
Sbjct: 1 MLSTGTPPTIAAIATANGRGGVGVVRISGKNLLPFAQQITGG--KTPEPRTALYTDFLDA 58
Query: 59 NNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEF 118
N ID GL++YF AP S+TGEDV+EL GHGG I+L MLL CLE+G R+A GEF
Sbjct: 59 QGNAIDNGLLLYFTAPASFTGEDVLELQGHGGQIVLQMLLQRCLELGA----RIAEAGEF 114
Query: 119 TKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIE 178
TKRAFLNNKLDL Q E++ DLI+AS++SAA+ A+ SL G FS I+ L+D LI LR L+E
Sbjct: 115 TKRAFLNNKLDLAQAESVADLIDASSQSAARMAVRSLKGAFSAQIHTLVDDLITLRMLVE 174
Query: 179 FSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKS 238
+ DFPEE+ + L D +L ++ +L I+ ++ A++R+G++VVL+G PNVGKS
Sbjct: 175 ATLDFPEEDIDF-LEAADAKGKLRALQTQLADILANARQGAILRDGMSVVLVGAPNVGKS 233
Query: 239 SLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEK 298
SL N+L G DVAIVT IAGTTRD + + I ++ ITDTAG +++ + VEK
Sbjct: 234 SLLNALAGDDVAIVTDIAGTTRDTVREQITLDGVPIHITDTAG-------LRQTDDVVEK 286
Query: 299 IGIERTWVELKNSDIIIYVQDAR--YDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ- 355
IGIER+ ++N+D+ + + D +K T + I+ P ++ I V NKID Q
Sbjct: 287 IGIERSEKAVQNADVALILVDPSEGINKTT---RDIMCRLPAHLKRIEVHNKIDLRNVQA 343
Query: 356 --------KNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIH 407
++++ + + I LSA G++LL+ LL I Q +LAR RHIH
Sbjct: 344 ARSDDAAAQSLSGADTV--ISLSAKTGAGLDLLKAALLQQI-GWQGESEGLFLARTRHIH 400
Query: 408 SLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQ 467
+L A L A N ++EL+AE LR + I G+ T++DLL IFS+
Sbjct: 401 ALQTAQAELENAALCDN-------NHIELLAEHLRLAQAACNQITGEFTSDDLLGVIFSR 453
Query: 468 FCIGK 472
FCIGK
Sbjct: 454 FCIGK 458
>gi|145630099|ref|ZP_01785881.1| tRNA modification GTPase [Haemophilus influenzae R3021]
gi|144984380|gb|EDJ91803.1| tRNA modification GTPase [Haemophilus influenzae R3021]
Length = 452
Score = 360 bits (923), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 198/468 (42%), Positives = 284/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + + + K K PR A Y F ++ I+D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPLATKVAQAILGKCPK---PRMADYLPFKDADSTILDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK+P+S+TGEDV+EL GHGG ++L +LL L+I G+RLA PGEF+++AFLN+K
Sbjct: 62 ALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQID---GIRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AA+SA+ SL G+FSK +N L+D +I LRT +E S DFP+E
Sbjct: 119 LDLAQAEAIADLIDATSEQAARSALKSLQGEFSKKVNTLVDSVIYLRTYVEASIDFPDEE 178
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + N L I +L + + K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 179 IDFLADGKIEAN-LRGIINQLENVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGR 237
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D +EVE+IGI R W E
Sbjct: 238 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT-------DEVERIGISRAWTE 290
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D II + D+ + D K + + P +PV V NKID +G Q + + +
Sbjct: 291 IEQADRIILMLDSSDPESVDLTKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGY 350
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G+ LLR L + IE +LAR RH+ +L +A +L + +
Sbjct: 351 QIISLSAQTHDGVKLLREHLKQAMGFQTGIEGG-FLARRRHLDALEKAAEHLQIGLVQLT 409
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 410 EFHAG-----ELLAEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452
>gi|424801823|ref|ZP_18227365.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Cronobacter
sakazakii 696]
gi|423237544|emb|CCK09235.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Cronobacter
sakazakii 696]
Length = 454
Score = 360 bits (923), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 285/474 (60%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG+ + + V K K R+A Y F N
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRVSGQQARDVAQAVLGKLPKA---RYADYLPFKDANGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D TD + I P +P+ V NK D +G Q I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDATDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + I LSA G+++LRN L + ++E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHSLIRLSARTNEGVDVLRNHLKQSMGFDTSMEGG-FLARRRHLQALEDAANHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|68249586|ref|YP_248698.1| tRNA modification GTPase TrmE [Haemophilus influenzae 86-028NP]
gi|81335985|sp|Q4QLQ9.1|MNME_HAEI8 RecName: Full=tRNA modification GTPase MnmE
gi|68057785|gb|AAX88038.1| probable tRNA modification GTPase TrmE [Haemophilus influenzae
86-028NP]
Length = 452
Score = 360 bits (923), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 198/468 (42%), Positives = 284/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + + + K K PR A Y F + I+D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPLATKVAQAILGKCPK---PRMADYLPFKDADGTILDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK+P+S+TGEDV+EL GHGG ++L +LL L+I G+RLA PGEF+++AFLN+K
Sbjct: 62 ALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQID---GIRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AA+SA+ SL G+FSK +N L+D +I LRT +E S DFP+E
Sbjct: 119 LDLAQAEAIADLIDATSEQAARSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE 178
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + N L I +L + + K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 179 IDFLADGKIEAN-LRGIINQLENVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGR 237
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D +EVE+IGI R W E
Sbjct: 238 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT-------DEVERIGISRAWTE 290
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D II + D+ + D K + + P +PV V NKID +G Q + + +
Sbjct: 291 IEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGY 350
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G+ LLR+ L + IE +LAR RH+ +L +A +L + +
Sbjct: 351 QIISLSAQTHDGVKLLRDHLKQAMGFQTGIEGG-FLARRRHLDALEKAAEHLQIGLVQLT 409
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 410 EFHAG-----ELLAEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452
>gi|145632387|ref|ZP_01788122.1| tRNA modification GTPase [Haemophilus influenzae 3655]
gi|144987294|gb|EDJ93824.1| tRNA modification GTPase [Haemophilus influenzae 3655]
Length = 452
Score = 360 bits (923), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 198/468 (42%), Positives = 284/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + + + K K PR A Y F + I+D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPLATKVAQAILGKCPK---PRMADYLPFKDADGTILDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK+P+S+TGEDV+EL GHGG ++L +LL L+I G+RLA PGEF+++AFLN+K
Sbjct: 62 ALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQID---GIRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E A +SA+ SL G+FSK +N L+D +I LRT +E S DFP+E
Sbjct: 119 LDLAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE 178
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + N L I +L + + K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 179 IDFLADGKIEAN-LRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGR 237
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D I+EVE+IGI R W E
Sbjct: 238 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRD-------AIDEVERIGISRAWTE 290
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D II + D+ + D K + + P +PV V NKID +G Q + + +
Sbjct: 291 IEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGY 350
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G+ LLR L + QT +LAR RH+ +L++A +L + +
Sbjct: 351 QMISLSAQTHDGVKLLREHLKQAM-GFQTGMEGGFLARRRHLDALDKAAEHLQIGLVQLT 409
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 410 EFHAG-----ELLAEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452
>gi|298369774|ref|ZP_06981091.1| tRNA modification GTPase TrmE [Neisseria sp. oral taxon 014 str.
F0314]
gi|298282331|gb|EFI23819.1| tRNA modification GTPase TrmE [Neisseria sp. oral taxon 014 str.
F0314]
Length = 454
Score = 360 bits (923), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 205/478 (42%), Positives = 287/478 (60%), Gaps = 30/478 (6%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M I IAT PGRGGVG+IRLSGKNL + + + K KPR A Y+ F +
Sbjct: 1 MSASQPTIAAIATAPGRGGVGVIRLSGKNLLPLAQTLSGG--KTPKPRTALYTDFLGGDG 58
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID G+++YF AP S+TGEDV+EL GHGGP+++ MLLS CLE+G R+A PGEFTK
Sbjct: 59 QPIDNGILLYFAAPASFTGEDVVELQGHGGPVVMDMLLSRCLELGA----RMAQPGEFTK 114
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLNNKLDL Q E++ DLI+AS++SAA+ A+ SL G FS+ I+ L+D LI LR L+E +
Sbjct: 115 RAFLNNKLDLAQAESVADLIDASSKSAARMALRSLKGAFSRHIHELVDDLITLRMLVEAT 174
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE+ + L D +L ++ +L ++ ++ A++R G+NVVL+G PNVGKSSL
Sbjct: 175 LDFPEEDIDF-LEAADARGKLQALQGRLKTVLASAEQGAILREGMNVVLVGAPNVGKSSL 233
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G D+AIVT IAGTTRD + + I ++ I DTAG +++ + VE+IG
Sbjct: 234 LNALAGDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAG-------LRETDDVVEQIG 286
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IER+ + +D+ + + D R + + I+ + P + I + NK D +G +
Sbjct: 287 IERSRKAVSEADVALILIDPREGVNAKT-QAILNSLPAGLKKIEIHNKADLTGEPVAVR- 344
Query: 361 KNNIAN------IYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+A I LSA G++LL++ LL + Q S +LAR RH+++L+EA
Sbjct: 345 SGGLAQTGADTVISLSAKTGAGLDLLKHALLQEV-GWQGESESLFLARSRHLNALHEAEA 403
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L A N +EL AE LR S I G+ T +DLL IFS+FCIGK
Sbjct: 404 ELENAALCDN-------NQIELFAEHLRLAQNACSEITGEFTADDLLGVIFSRFCIGK 454
>gi|332143488|ref|YP_004429226.1| tRNA modification GTPase [Alteromonas macleodii str. 'Deep
ecotype']
gi|327553510|gb|AEB00229.1| tRNA modification GTPase [Alteromonas macleodii str. 'Deep
ecotype']
Length = 462
Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 196/472 (41%), Positives = 287/472 (60%), Gaps = 27/472 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I AT PGRGGVGI+R+SG +I E + +L PR ATY+ F N ++ID+G+
Sbjct: 11 ITAQATAPGRGGVGIVRVSGPKAKAIAEALVPS---ELTPRLATYTPFVDANKSVIDQGI 67
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++FK P+S+TGEDV+EL GHGG +++ ML+ + L G + RLA PGEF+++AFLN+K
Sbjct: 68 ALFFKGPNSFTGEDVLELQGHGGQVVMDMLIDAVLATGHA---RLASPGEFSEQAFLNDK 124
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS++ AA+SA+ SL G+FS I L D++++LR +E + DFPEE
Sbjct: 125 LDLAQAEAIADLIDASSKQAARSALRSLQGEFSTQIQTLSDQIVHLRMYVEAAIDFPEEE 184
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L I + L K+ Q K+ L+R G+ VV+ G+PN GKSSL N+L G
Sbjct: 185 IDF-LSDGKISGDLSTIMQSLTKVRDQAKQGTLLREGMQVVIAGRPNAGKSSLLNALAGR 243
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
D AIVT IAGTTRD + + I I+ I DTAG ++++ ++VE+IGIER W
Sbjct: 244 DSAIVTDIAGTTRDVLKEHIHIDGMPVHIIDTAG-------LRESPDKVEQIGIERAWQA 296
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSG---HQKNIN-Y 360
+ +D +++V D+ D + + P IPV V NK D S Q ++N
Sbjct: 297 INEADHVLFVVDSTATSVIDPYEIWPEFMARLPQGIPVTVVRNKADLSTLSIGQSSVNTQ 356
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
+ +I+ I LSA + G++ L+ L + T E ++AR RHI +L++A Y+S
Sbjct: 357 QGDISVINLSAKEGSGVDTLKAHLAKTMGFDTTTEGQ-FIARRRHIDALDQAYSYVSTGE 415
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ ++ + EL+AE+LR H+ L I G+ T +DLL IFS FCIGK
Sbjct: 416 QQLHDAMAG-----ELLAEELRLAHQALCEITGEFTPDDLLGKIFSSFCIGK 462
>gi|16272938|ref|NP_439164.1| tRNA modification GTPase TrmE [Haemophilus influenzae Rd KW20]
gi|1574033|gb|AAC22664.1| thiophene and furan oxidation protein (thdF) [Haemophilus
influenzae Rd KW20]
Length = 461
Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 198/468 (42%), Positives = 284/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + + + K K PR A Y F + I+D+G+
Sbjct: 14 IVAQATAPGRGGIGILRVSGPLATKVAQAILGKCPK---PRMADYLPFKDADGTILDQGI 70
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK+P+S+TGEDV+EL GHGG ++L +LL L+I G+RLA PGEF+++AFLN+K
Sbjct: 71 ALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQID---GIRLARPGEFSEQAFLNDK 127
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E A +SA+ SL G+FSK +N L+D +I LRT +E S DFP+E
Sbjct: 128 LDLAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE 187
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + N L I +L + + K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 188 IDFLADGKIEAN-LRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGR 246
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D I+EVE+IGI R W E
Sbjct: 247 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRD-------AIDEVERIGISRAWTE 299
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D II + D+ + D K + + P +PV V NKID +G Q + + +
Sbjct: 300 IEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGY 359
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G+ LLR L + QT +LAR RH+ +L++A +L + +
Sbjct: 360 QMISLSAQTHDGVQLLREHLKQAM-GFQTGMEGGFLARRRHLDALDKAAEHLQIGLVQLT 418
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 419 EFHAG-----ELLAEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 461
>gi|284007058|emb|CBA72333.1| probable tRNA modification GTPase [Arsenophonus nasoniae]
Length = 470
Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 201/472 (42%), Positives = 292/472 (61%), Gaps = 25/472 (5%)
Query: 5 NSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIID 64
N II ATPPGRGGVGI+R+SG + I IV K + PR+A Y F+ N ++D
Sbjct: 20 NDTIIAQATPPGRGGVGILRISGPKVIEIARIVLGKLPQ---PRYADYLPFYDSNGKVLD 76
Query: 65 KGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFL 124
+G+ +YF AP+S+TGEDV+EL GHGGP+I+ +LL L I + +R+A PGEF++RAFL
Sbjct: 77 QGIALYFPAPNSFTGEDVLELQGHGGPVIIDLLLKRILVIDE---IRIANPGEFSERAFL 133
Query: 125 NNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFP 184
N+K+DL Q EAI DLI+ASTE AA+SA+ SL G FS+ I +++ L NLR +E + DFP
Sbjct: 134 NDKMDLAQAEAIADLIDASTEQAARSAVNSLQGVFSQQIYEMVEALTNLRIYVEAAIDFP 193
Query: 185 EENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSL 244
+E + L+ +L ++ L + Q + +L+R G+ VV+ G+PN GKSSL N+L
Sbjct: 194 DEEIDF-LSDGKIETKLNEVIAHLDSVRSQAYQGSLLREGMKVVIAGRPNAGKSSLLNAL 252
Query: 245 VGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304
G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVEKIG+ER
Sbjct: 253 SGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREATDEVEKIGVERA 305
Query: 305 WVELKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQKNINY 360
W E++ +D I+++ D+ + T+ K+I F P ++P+ + NK+D + I
Sbjct: 306 WQEIEQADHILFMVDSTTTQATE-PKQIWPEFMARLPKSLPITVIRNKVDITDEPIAITK 364
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
N + I LSA ++ GI+LLR L + I IE +LAR RHI +LN A +L
Sbjct: 365 VGNYSLIRLSAYRKEGIDLLRQHLKESIGFNHHIEGG-FLARRRHIQALNIAAEHLQQGY 423
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + + EL+AE+LR + LS I G+ +++DLL +IFS FCIGK
Sbjct: 424 QQLVVAHSG-----ELLAEELRLTQQALSEITGEFSSDDLLGSIFSSFCIGK 470
>gi|148828171|ref|YP_001292924.1| tRNA modification GTPase TrmE [Haemophilus influenzae PittGG]
gi|166200481|sp|A5UID5.1|MNME_HAEIG RecName: Full=tRNA modification GTPase MnmE
gi|148719413|gb|ABR00541.1| tRNA modification GTPase [Haemophilus influenzae PittGG]
Length = 452
Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 197/468 (42%), Positives = 284/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + + + K K PR A Y F + I+D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPLATEVAQAILGKCPK---PRMADYLPFKDADGTILDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK+P+S+TGEDV+EL GHGG ++L +LL L+I G+RLA PGEF+++AFLN+K
Sbjct: 62 ALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQID---GIRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
DL Q EAI DLI+A++E AA+SA+ SL G+FSK +N L+D +I LRT +E S DFP+E
Sbjct: 119 FDLAQAEAIADLIDATSEQAARSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE 178
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + N L I +L + + K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 179 IDFLADGKIEAN-LRSIINQLEDVRAEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGR 237
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D +EVE+IGI R W E
Sbjct: 238 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT-------DEVERIGISRAWTE 290
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D II + D+ + D K + + P +PV V NKID +G Q + + ++
Sbjct: 291 IEQADRIILMLDSSDPESVDLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQSGY 350
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G+ LLR L + QT +LAR RH+ +L++A +L + +
Sbjct: 351 QMISLSAQTHDGVKLLREHLKQAM-GFQTGMEGGFLARRRHLDALDKAAEHLQIGLVQLT 409
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 410 EFHAG-----ELLAEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452
>gi|37528711|ref|NP_932056.1| tRNA modification GTPase TrmE [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|46577344|sp|Q7MAX1.1|MNME_PHOLL RecName: Full=tRNA modification GTPase MnmE
gi|36788150|emb|CAE17277.1| tRNA modification GTPase TrmE [Photorhabdus luminescens subsp.
laumondii TTO1]
Length = 454
Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 192/468 (41%), Positives = 288/468 (61%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ ATPPGRGGVGI+R+SG + E+V K K PR+A Y F + I+D+G+
Sbjct: 7 IVAQATPPGRGGVGILRVSGPKAAQVAEVVLGKLPK---PRYADYLPFRDVDGQILDQGI 63
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
IYF P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++RAFLN+K
Sbjct: 64 AIYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLS---GVRIANPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AA+SAM SL G FS ++ +++ L +LR +E + DFP+E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSAMNSLQGAFSTQVHQMVEALTHLRIYVEAAIDFPDEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L ++ +L ++ Q ++ +L+R G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDF-LSDGKIEAKLDEVIVELERVRSQARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWQE 292
Query: 308 LKNSDIIIYVQDARYD---KHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D+ + + + + P ++P+ V NK D + + +I +
Sbjct: 293 IEQADRVLFMVDSTTTNAVEPVEIWPEFMARLPKSLPITVVRNKTDMTDEETSIAEVSGY 352
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
+ I LSA GI+LLR+ L + + + E +LAR RH+ +LN A +L
Sbjct: 353 SLIRLSARSGEGIDLLRDHLKETMGFSSNTEGG-FLARRRHLQALNTAAEHLQQ-----G 406
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ ++ EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 407 HEQLVVARSGELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|419796099|ref|ZP_14321665.1| tRNA modification GTPase TrmE [Neisseria sicca VK64]
gi|385699830|gb|EIG30101.1| tRNA modification GTPase TrmE [Neisseria sicca VK64]
Length = 454
Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 206/478 (43%), Positives = 288/478 (60%), Gaps = 30/478 (6%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M I IAT PGRGGVG+IRLSGKNL + + + K KPR A Y+ F +
Sbjct: 1 MSASQPTIAAIATAPGRGGVGVIRLSGKNLLPLAQTLSGG--KTPKPRTALYTDFLGGDG 58
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID G+++YF AP S+TGEDVIEL GHGGP+++ MLLS CLE+G R+A PGEFTK
Sbjct: 59 QPIDNGILLYFAAPASFTGEDVIELQGHGGPVVMDMLLSRCLELGA----RMAQPGEFTK 114
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLNNKLDL Q E++ DLI+AS++SAA+ A+ SL G FS+ I+ L+D LI LR L+E +
Sbjct: 115 RAFLNNKLDLAQAESVADLIDASSKSAARMALRSLKGAFSQHIHELVDDLITLRMLVEAT 174
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE+ + L D +L ++ +L ++ ++ A++R G+NVVL+G PNVGKSSL
Sbjct: 175 LDFPEEDIDF-LEAADARGKLQALQGRLKTVLASAEQGAILREGMNVVLVGAPNVGKSSL 233
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G D+AIVT IAGTTRD + + I ++ I DTAG +++ + VE+IG
Sbjct: 234 LNALAGDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAG-------LRETDDVVEQIG 286
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IER+ + +D+ + + D R + + I+ + P + I + NK D +G +
Sbjct: 287 IERSRKAVSEADVALILIDPREGVNAKT-QAILNSLPEGLKKIEIHNKADLTGEPVAVR- 344
Query: 361 KNNIAN------IYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ +A I LSA G++LL++ LL + Q S +LAR RH+++L+EA
Sbjct: 345 SDGLAQTGADTVISLSAKTGAGLDLLKHALLQEV-GWQGESESLFLARSRHLNALHEAEA 403
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L A N +EL AE LR S I G+ T +DLL IFS+FCIGK
Sbjct: 404 ELENAALCDN-------NQIELFAEHLRLAQNACSEITGEFTADDLLGVIFSRFCIGK 454
>gi|152979629|ref|YP_001345258.1| tRNA modification GTPase TrmE [Actinobacillus succinogenes 130Z]
gi|205829052|sp|A6VQS6.1|MNME_ACTSZ RecName: Full=tRNA modification GTPase MnmE
gi|150841352|gb|ABR75323.1| tRNA modification GTPase TrmE [Actinobacillus succinogenes 130Z]
Length = 452
Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 198/469 (42%), Positives = 286/469 (60%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ ATP GRGGVGI+R+SG + + V K LKPRFA Y F ++ +D+G+
Sbjct: 5 IVAQATPIGRGGVGILRVSGPLAADVAKAVVGKA---LKPRFANYLPFKDEDGTTLDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F++P+S+TGED++EL GHGG ++L +LL L++ G+RLA PGEF+++AFLN+K
Sbjct: 62 ALFFQSPNSFTGEDILELQGHGGQVVLDLLLKRILQVN---GVRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AA+SA+ SL G+FS +N L+D +I LRT +E + DFP+E
Sbjct: 119 LDLAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDGVIYLRTYVEAAIDFPDEE 178
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L L I +L ++ + K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 179 IDF-LADGKIEGHLNDIIAQLERVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGR 237
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D +EVE+IGI R W E
Sbjct: 238 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT-------DEVERIGITRAWNE 290
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQKNINYKNN 363
++ +D ++ + D+ D + +K+ F P +IPV + NK D SG + + +N
Sbjct: 291 IEQADRVLLMLDS-SDPDSRQPEKVRSEFLAKLPSHIPVTIIRNKTDLSGENEGVTQENG 349
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA R GI+LLR L + QT +LAR RH+ +L +A Y+L +
Sbjct: 350 FTVIRLSAQTRQGIDLLREHLKQSM-GYQTGTEGGFLARRRHLDALEKAAYHLRQGHIQL 408
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 409 TEFRAG-----ELLAEELRMVQSHLSEITGQFTSDDLLSNIFSSFCIGK 452
>gi|145634177|ref|ZP_01789888.1| tRNA modification GTPase [Haemophilus influenzae PittAA]
gi|145268621|gb|EDK08614.1| tRNA modification GTPase [Haemophilus influenzae PittAA]
Length = 452
Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 198/468 (42%), Positives = 283/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + + + K K PR A Y F + I+D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPLATEVAQAILGKCPK---PRMADYLPFKDADGTILDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK+P+S+TGEDV+EL GHGG ++L +LL L+I G+RLA PGEF+++AFLN+K
Sbjct: 62 ALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQID---GIRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AA+SA+ SL G+FSK +N L+D +I LRT +E S DFP+E
Sbjct: 119 LDLAQAEAIADLIDATSEQAARSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE 178
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + N L I +L + + K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 179 IDFLADGKIEAN-LRGIINQLENVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGR 237
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D +EVE+IGI R W E
Sbjct: 238 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT-------DEVERIGISRAWTE 290
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D II + D+ + D K + + P +PV V NKID +G Q + + +
Sbjct: 291 IEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGY 350
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G+ LLR L + IE +LAR RH+ +L +A +L + +
Sbjct: 351 QIISLSAQTHDGVKLLREHLKQAMGFQTGIEGG-FLARRRHLDALEKAAEHLQIGLVQLT 409
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 410 EFHAG-----ELLAEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452
>gi|419845990|ref|ZP_14369248.1| tRNA modification GTPase TrmE [Haemophilus parainfluenzae HK2019]
gi|386414620|gb|EIJ29172.1| tRNA modification GTPase TrmE [Haemophilus parainfluenzae HK2019]
Length = 453
Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 200/475 (42%), Positives = 288/475 (60%), Gaps = 36/475 (7%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + + V K KPR A Y F + ++D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPKALEVAQAVL--VGKCPKPRMADYLPFKDADGTVLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK+P+S+TGEDV+EL GHGG ++L +LL L++ G+RLA PGEF+++AFLN+K
Sbjct: 63 ALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQLD---GVRLARPGEFSEQAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AA+SA+ SL G+FS +N L+D +I LRT +E S DFP+E
Sbjct: 120 LDLAQAEAIADLIDATSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEASIDFPDEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQ-------GKKRALIRNGLNVVLIGQPNVGKSSL 240
+ + + KI+ KL +II Q K+ +++R G+ VV+ G+PN GKSSL
Sbjct: 180 IDFLADG--------KIEAKLREIINQLDLVRSEAKQGSILREGMKVVIAGRPNAGKSSL 231
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IG
Sbjct: 232 LNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREATDEVERIG 284
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
I R W E++ +D II + D+ +K + + P N+PV V NK+D SG
Sbjct: 285 ISRAWTEIEQADRIILMLDSSDPDSQHIEKVRSEFLSKLPNNMPVTIVRNKVDLSGETVG 344
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
+ +N + LSA G++LLR L + QT +LAR RH+ +L +A +L
Sbjct: 345 LKEENGTTTVCLSAQTHQGVDLLREHLKQAM-GFQTGMEGGFLARRRHLDALEKAAEHLQ 403
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
I ++ +E F EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 404 --IGLVQLTE--FHAG-ELLAEELRLVQANLSEITGQFTSDDLLGNIFSSFCIGK 453
>gi|223041689|ref|ZP_03611885.1| tRNA modification GTPase TrmE [Actinobacillus minor 202]
gi|198246542|gb|ACH82231.1| tRNA modification GTPase TrmE [Actinobacillus minor 202]
Length = 452
Score = 359 bits (922), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 287/474 (60%), Gaps = 35/474 (7%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ ATP GRGGVGI+R+SG + + V K +LKPR A Y F + ++D+G+
Sbjct: 5 IVAQATPIGRGGVGILRVSGPLASEVAKAVVGK---ELKPRLANYLPFMDTDGTVLDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++FKAP+S+TGEDV+EL GHGG +IL +LL LE+ G+R+A GEF+++AFLN+K
Sbjct: 62 ALFFKAPNSFTGEDVLELQGHGGQVILDLLLKRILEVK---GVRIARAGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AA+SA+ SL G+FS +N L+D +I LRT +E + DFP+E
Sbjct: 119 LDLAQAEAIADLIDATSEQAARSALKSLQGEFSNKVNELVDSVIYLRTYVEAAIDFPDEE 178
Query: 188 QELILNK------NDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
+ + + ND +L ++K + K+ +++R G+ VV+ G+PN GKSSL
Sbjct: 179 IDFLADGKIEAKLNDIITQLANVRK-------EAKQGSILREGMKVVIAGKPNAGKSSLL 231
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT+IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 232 NALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 284
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFD---KKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
+R W E+ +D ++ + D+ + F + + P NIPV + NK+D SG + +
Sbjct: 285 QRAWDEIAQADHVLLMIDSSEQQADVFKTEWAEFLAKLPQNIPVTVIRNKVDLSGESEGL 344
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
++ I LSA ++G++LLR L + + E +LAR RH+ +L A +L
Sbjct: 345 EQQDGFTLIRLSAQTKVGVDLLREHLKQSMGYQSSTEGG-FLARRRHLQALETAAEHLER 403
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ Q EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 404 GHVQLTQFFAG-----ELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 452
>gi|148826352|ref|YP_001291105.1| tRNA modification GTPase TrmE [Haemophilus influenzae PittEE]
gi|166200480|sp|A5UD71.1|MNME_HAEIE RecName: Full=tRNA modification GTPase MnmE
gi|148716512|gb|ABQ98722.1| tRNA modification GTPase TrmE [Haemophilus influenzae PittEE]
Length = 452
Score = 359 bits (922), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 198/468 (42%), Positives = 283/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + + + K K PR A Y F + I+D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPLATEVAQAILGKCPK---PRMADYLPFKDADGTILDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK+P+S+TGEDV+EL GHGG ++L +LL L+I G+RLA PGEF+++AFLN+K
Sbjct: 62 ALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQID---GIRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AA+SA+ SL G+FSK +N L+D +I LRT +E S DFP+E
Sbjct: 119 LDLAQAEAIADLIDATSEQAARSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE 178
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + N L I +L + + K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 179 IDFLADGKIEAN-LRGIINQLENVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGR 237
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D +EVE+IGI R W E
Sbjct: 238 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT-------DEVERIGISRAWTE 290
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D II + D+ + D K + + P +PV V NKID +G Q + + +
Sbjct: 291 IEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEEGGY 350
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G+ LLR L + IE +LAR RH+ +L +A +L + +
Sbjct: 351 QIISLSAQTHDGVKLLREHLKQAMGFQTGIEGG-FLARRRHLDALEKAAEHLQIGLVQLT 409
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 410 EFHAG-----ELLAEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452
>gi|334144742|ref|YP_004537898.1| tRNA modification GTPase mnmE [Thioalkalimicrobium cyclicum ALM1]
gi|333965653|gb|AEG32419.1| tRNA modification GTPase mnmE [Thioalkalimicrobium cyclicum ALM1]
Length = 457
Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 202/475 (42%), Positives = 297/475 (62%), Gaps = 30/475 (6%)
Query: 2 LTKNS-PIIGIATPPGRGGVGIIRLSGKNLWSIVE--IVCKKTKKQLKPRFATYSSFFCK 58
L +NS I+ +ATPPGRGGVGI+R+SG I + + C K+ A Y +F+ +
Sbjct: 9 LKQNSDTIVALATPPGRGGVGIVRVSGPASEQIAQQMLGCLPEIKK-----AHYGAFYAQ 63
Query: 59 NNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEF 118
N +I+D+G+ + FKAPHS+TGEDV+EL GHGGPII+ L+ + ++G R A PGEF
Sbjct: 64 NGDILDQGIALRFKAPHSFTGEDVLELQGHGGPIIMQWLIEKII----ALGARPARPGEF 119
Query: 119 TKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIE 178
+++AFLN+KLDL Q EAI D+I+A++ AAKSA+ SL G FSK I ++++LI LR +E
Sbjct: 120 SQQAFLNDKLDLTQAEAIADIISATSAQAAKSALRSLQGDFSKAIEHMVEQLIRLRLYVE 179
Query: 179 FSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKS 238
+ DFPEE + L+ + +L +K++L +++Q ++ AL+R G++VV++GQPN GKS
Sbjct: 180 AAIDFPEEEIDF-LSDSHIQQQLDLVKQQLTLVLEQAQQGALLREGMSVVILGQPNAGKS 238
Query: 239 SLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEK 298
SL N+L G + AIVT IAGTTRD + I ++ I DTAG+ D + + VE+
Sbjct: 239 SLLNALSGEETAIVTDIAGTTRDIVKAEIHLDGMPLHILDTAGLRDTH-------DAVEQ 291
Query: 299 IGIERTWVELKNSD-IIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
IGI R W ++ ++ +++ VQ D D+ II P N+ V + NKID Q +
Sbjct: 292 IGIARAWQAIEQANHVLVMVQAG--DDIDPKDQAIIAQLPKNLSVTLIKNKIDLIKAQPS 349
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
I I LSA + G++LL L ++ QT ES +LAR+RH+ +L++A +LS
Sbjct: 350 ITKTAMGYEIALSAKHKQGLSLLIEHLKSIMGYKQTNESV-FLARKRHLVALDKAQQHLS 408
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
A Q++ + EL+AEDLR + LS I G+ T++DLL IFS FCIGK
Sbjct: 409 LA-----QTQLDLGAG-ELLAEDLRIAQDALSEITGRFTSDDLLGRIFSSFCIGK 457
>gi|375264034|ref|YP_005021477.1| tRNA modification GTPase TrmE [Vibrio sp. EJY3]
gi|369839359|gb|AEX20503.1| tRNA modification GTPase TrmE [Vibrio sp. EJY3]
Length = 453
Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 200/469 (42%), Positives = 283/469 (60%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG + E V KT LKPR+A Y F +N ++D+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGPKANLVAEEVTGKT---LKPRYAEYLPFQAENGTVLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF PHS+TGEDV+EL GHGGP+++ ML+ L I G+R A PGEF++RAFLN+K
Sbjct: 63 ALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILGIE---GVRAARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FS+ I L++ LI+LR +E + DFPEE
Sbjct: 120 MDLTQAEAIADLIDASSEEAAKSALQSLQGQFSQRIQTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LADGKVAGDLQTIIDNLDAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + +EVEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVEKIGIERAWDE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQKNINYKNN 363
+ +D ++++ D TD K I +F P +I + + NK D +G + I + NN
Sbjct: 292 IAQADRVLFMVDGTTTDATD-PKDIWPDFVDRLPDSIGMTVIRNKADQTGEEMGICHVNN 350
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA G++ LR L + + + E ++AR RH+ +L A +L I
Sbjct: 351 PTLIRLSAKTGTGVDALRAHLKECMGFSGNTEGG-FMARRRHLDALERAAQHLQ-----I 404
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 405 GQEQLEGYMAGEILAEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|343493272|ref|ZP_08731600.1| tRNA modification GTPase TrmE [Vibrio nigripulchritudo ATCC 27043]
gi|342826359|gb|EGU60792.1| tRNA modification GTPase TrmE [Vibrio nigripulchritudo ATCC 27043]
Length = 453
Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 203/469 (43%), Positives = 285/469 (60%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG + E V T K LKPR+A Y F ++ +D+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGPLASKVAEEV---TGKSLKPRYAEYLPFTDQDGLELDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF PHS+TGEDV+EL GHGGP+++ ML+ L I G+R A PGEF++RAFLN+K
Sbjct: 63 ALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILTIS---GVRPARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FSK IN L++ LI+LR +E + DFPEE
Sbjct: 120 MDLTQAEAIADLIDASSEEAAKSALQSLQGQFSKRINTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + Q+ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LADGKVAADLQTIIDNLAAVRQEANQGAIMREGMKVVIAGRPNAGKSSLLNTLSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + +EVEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVEKIGIERAWEE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQKNINYKNN 363
++ +D ++++ D + TD + I +F P NI + + NK D +G I + N
Sbjct: 292 IEQADRVLFMVDGTTTEATD-PRDIWPDFVDRLPNNIGMTVIRNKADQTGEDLGICHVNT 350
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA GI+ LRN L +++ + E ++AR RH+ +L A +L I
Sbjct: 351 PTLIRLSAKTGEGIDALRNHLKEIMGFSGNQEGG-FMARRRHLDALERAAEHLD-----I 404
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 405 GQQQLEGYMAGEILAEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|311281727|ref|YP_003943958.1| tRNA modification GTPase TrmE [Enterobacter cloacae SCF1]
gi|308750922|gb|ADO50674.1| tRNA modification GTPase TrmE [Enterobacter cloacae SCF1]
Length = 454
Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 197/475 (41%), Positives = 283/475 (59%), Gaps = 25/475 (5%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKAREVAEAVLGKLPK---PRYADYLPFNDADGA 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNGVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + I P N+P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAQIWPDFIARLPTNLPITVVRNKADMTGEAVGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSL-NEANYYLS 417
+ N + I LSA + G++LLRN L + +E +LAR RH+ +L AN+
Sbjct: 347 SEVNGHSLIRLSARQGEGVDLLRNHLKQSMGFDTNMEGG-FLARRRHLQALETAANHLQQ 405
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++I EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLIGAWAG------ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|417841468|ref|ZP_12487572.1| tRNA modification GTPase mnmE [Haemophilus haemolyticus M19501]
gi|341949506|gb|EGT76110.1| tRNA modification GTPase mnmE [Haemophilus haemolyticus M19501]
Length = 452
Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 198/468 (42%), Positives = 285/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + + V K K PR A Y F + ++D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPLATEVAQAVLGKCPK---PRMADYLPFKDADGTVLDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK+P+S+TGEDV+EL GHGG ++L +LL L+I G+RLA PGEF+++AFLN+K
Sbjct: 62 ALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQID---GIRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AA+SA+ SL G+FSK +N L+D +I LRT +E S DFP+E
Sbjct: 119 LDLAQAEAIADLIDATSEQAARSALKSLQGEFSKKVNELVDFVIYLRTYVEASIDFPDEE 178
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + N L I +L + + K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 179 IDFLADGKIEAN-LRGIINQLKDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGR 237
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D +EVE+IGI R W E
Sbjct: 238 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT-------DEVERIGISRAWTE 290
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D II + D+ + D K + + P+ +PV V NKID +G Q + + ++
Sbjct: 291 IEQADRIILMLDSSDPESADLSKVRSEFLAKLPITLPVTIVRNKIDLNGEQASESEESGY 350
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G+ LLR L + QT +LAR RH+ +L +A +L + +
Sbjct: 351 QIIRLSAQTHDGVQLLREHLKQAM-GFQTGMEGGFLARRRHLDALEKAAEHLQIGLVQLT 409
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 410 EFHAG-----ELLAEELRLVQTYLSEITGEFTSDDLLGNIFSSFCIGK 452
>gi|421543240|ref|ZP_15989337.1| tRNA modification GTPase TrmE [Neisseria meningitidis NM255]
gi|402315446|gb|EJU51010.1| tRNA modification GTPase TrmE [Neisseria meningitidis NM255]
Length = 448
Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 204/473 (43%), Positives = 283/473 (59%), Gaps = 27/473 (5%)
Query: 2 LTKNSPIIG-IATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
++ N P I +AT GRGGVG+IR+SGKNL + E +C KT K PR ATY+ F +
Sbjct: 1 MSDNVPTIAAVATASGRGGVGVIRISGKNLLPMAEALCGKTPK---PRVATYADFTDADG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID GL+++F AP S+TGEDVIEL GHGGP+++ MLL+ CLE+G RLA PGEFTK
Sbjct: 58 QAIDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLELGA----RLAEPGEFTK 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q E + DLI+AS+ SAA+ A+ SL G FS+ I+ L++ LI LR L+E +
Sbjct: 114 RAFLNDKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEAT 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE+ + L D +L +++ + ++ ++ A++R GLNVVL+G PNVGKSSL
Sbjct: 174 LDFPEEDIDF-LEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G +VAIVT IAGTTRD + + I I+ I DTAG +++ + VE+IG
Sbjct: 233 LNALAGDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAG-------LRETDDVVERIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IER+ + +D+ + + D R + + + I+ P + I + +K D
Sbjct: 286 IERSRKAVSEADVALVLVDPR-EGLNEKTRAILDALPPELKRIEIHSKSDLHTSAAAAFE 344
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP-YLARERHIHSLNEANYYLSCA 419
I LSA G++ L+ TLL E ES +LAR RH+++L A LS A
Sbjct: 345 TGADTVIPLSAKTGDGLDALKRTLLR--EAGWQGESEGLFLARTRHVNALKAAQEELSLA 402
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
N +EL+AE LR I G+ T +DLL IFS+FCIGK
Sbjct: 403 ALCGNH-------QIELLAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448
>gi|378697209|ref|YP_005179167.1| GTPase [Haemophilus influenzae 10810]
gi|301169727|emb|CBW29328.1| GTPase [Haemophilus influenzae 10810]
Length = 452
Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 197/468 (42%), Positives = 283/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + + + K K PR A Y F + I+D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPLATKVAQAILGKCPK---PRMADYLPFKDADGTILDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK+P+S+TGEDV+EL GHGG ++L +LL L+I G+RLA PGEF+++AFLN+K
Sbjct: 62 ALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQID---GIRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E A +SA+ SL G+FSK +N L+D +I LRT +E S DFP+E
Sbjct: 119 LDLAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE 178
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + N L I +L + + K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 179 IDFLADGKIEAN-LRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGR 237
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D +EVE+IGI R W E
Sbjct: 238 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT-------DEVERIGISRAWTE 290
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D II + D+ + D K + + P +PV V NKID +G Q + + +
Sbjct: 291 IEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGY 350
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G+ LLR L + QT +LAR RH+ +L++A +L + +
Sbjct: 351 QMISLSAQTHDGVQLLREHLKQAM-GFQTGMEGGFLARRRHLDALDKAAEHLQIGLVQLT 409
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 410 EFHAG-----ELLAEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452
>gi|229846059|ref|ZP_04466171.1| tRNA modification GTPase TrmE [Haemophilus influenzae 7P49H1]
gi|229811063|gb|EEP46780.1| tRNA modification GTPase TrmE [Haemophilus influenzae 7P49H1]
Length = 452
Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 198/468 (42%), Positives = 282/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + + + K K PR A Y F + I+D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPLATKVAQAILGKCPK---PRMADYLPFKDADGTILDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK+P+S+TGEDV+EL GHGG ++L +LL L+I G+RLA PGEF+++AFLN+K
Sbjct: 62 ALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQID---GIRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E A +SA+ SL G+FSK +N L+D +I LRT +E S DFP+E
Sbjct: 119 LDLAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNALVDSVIYLRTYVEASIDFPDEE 178
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + N L I +L + + K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 179 IDFLADGKIEAN-LRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGR 237
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D +EVE+IGI R W E
Sbjct: 238 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT-------DEVERIGISRAWTE 290
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D II + D+ + D K + + P +PV V NKID +G Q + + +
Sbjct: 291 IEQADRIILMLDSSDPESVDLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEEGGY 350
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G+ LLR L + IE +LAR RH+ +L +A +L + +
Sbjct: 351 QIISLSAQTHDGVKLLREHLKQAMGFQTGIEGG-FLARRRHLDALEKAAEHLQIGLVQLT 409
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AE+LR LS I G+ T+NDLL NIFS FCIGK
Sbjct: 410 EFHAG-----ELLAEELRLVQSYLSEITGQFTSNDLLGNIFSSFCIGK 452
>gi|297539957|ref|YP_003675726.1| tRNA modification GTPase TrmE [Methylotenera versatilis 301]
gi|297259304|gb|ADI31149.1| tRNA modification GTPase TrmE [Methylotenera versatilis 301]
Length = 449
Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 208/465 (44%), Positives = 288/465 (61%), Gaps = 25/465 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT G GG+G++R+SG I V PR A Y F N ++ID+G+
Sbjct: 10 IAAIATASGAGGIGVVRVSGPFSGQIATGVLGHIPA---PRHAAYLDFKQANGDLIDRGI 66
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
IY+ PHSYTGEDV+EL HGG ++ +LL+ C+E+G R A PGEFT+RA+LN+K
Sbjct: 67 AIYYPNPHSYTGEDVLELQAHGGTALMQILLARCIELGA----RQAEPGEFTRRAYLNDK 122
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EA+ DLINA+T AAKSA+ SLSG+FS+ IN LL KLI+LR +E DFPEE
Sbjct: 123 IDLAQAEAVADLINAATAEAAKSAVRSLSGEFSQRINTLLLKLIDLRMFVEACLDFPEEE 182
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ I + ++L I +L + + K+ +L+R G+NVVL+GQPNVGKSSL N L G
Sbjct: 183 IDFI-TQGRVADKLATIIVELNAVFAKAKQGSLLREGINVVLVGQPNVGKSSLMNQLAGE 241
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
++AIVTSIAGTTRD I IQIN + DTAG +++ +EVEK GIERTW
Sbjct: 242 EIAIVTSIAGTTRDTIKNAIQINGVPLHVIDTAG-------LRETDDEVEKFGIERTWRA 294
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANI 367
++++I + + DA + T+ +K I+ P I I+V NKID + + K+ +I
Sbjct: 295 AQSANIALLLVDAAHGI-TETEKSILARLPQEIRKIWVHNKIDVANEPALVAEKDGAMHI 353
Query: 368 YLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSE 427
YLSA G++LL++ LL L E ++AR RH+ +L++ +L+ A + IN +
Sbjct: 354 YLSAKTGAGLDLLKSHLLKLAGYENNSEGV-FMARARHLEALSQVQIHLNFASEQINSA- 411
Query: 428 KNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
ELIAE+LR + LSSI G+ T +DLL IFS+FCIGK
Sbjct: 412 -------ELIAEELRISQDALSSITGEFTPDDLLGEIFSKFCIGK 449
>gi|365540376|ref|ZP_09365551.1| tRNA modification GTPase TrmE [Vibrio ordalii ATCC 33509]
Length = 453
Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 201/469 (42%), Positives = 284/469 (60%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG ++ + T K LKPR+A Y F ++ +D+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGPK---AAQVALEVTGKTLKPRYAEYLPFKHQDGTELDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
IYF PHS+TGEDV+EL GHGGP+++ ML+ L I GLR A PGEF++RAFLN+K
Sbjct: 63 AIYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILAIS---GLRAARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FSK I+ L+D LI+LR +E + DFPEE
Sbjct: 120 MDLTQAEAIADLIDASSEEAAKSALHSLQGQFSKRIHTLVDSLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ I + +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDFIADGK-VAADLQNIIDNLDAVRKEANQGAILREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
D AIVT IAGTTRD + + I I+ I DTAG+ D N +EVE+IGIER W E
Sbjct: 239 DSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAN-------DEVERIGIERAWDE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQKNINYKNN 363
+ +D ++++ D TD K+I +F P NI + + NK+D + I + N+
Sbjct: 292 IAKADRVLFMVDGTTTAATD-PKEIWPDFVDRLPENIGMTVIRNKVDQTKESLGICHVNS 350
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA G++ LR L + + E ++AR RH+ +L A +L +I
Sbjct: 351 PTLIRLSAKTGEGVDALRTHLKECMGFAGGNEGG-FMARRRHLDALERAAQHL-----MI 404
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 405 GQQQLEGYMAGEILAEELRLSQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|417285878|ref|ZP_12073169.1| tRNA modification GTPase TrmE [Escherichia coli TW07793]
gi|425302613|ref|ZP_18692492.1| tRNA modification GTPase TrmE [Escherichia coli 07798]
gi|386251119|gb|EII97286.1| tRNA modification GTPase TrmE [Escherichia coli TW07793]
gi|408210611|gb|EKI35173.1| tRNA modification GTPase TrmE [Escherichia coli 07798]
Length = 454
Score = 358 bits (920), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 195/474 (41%), Positives = 284/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +
Sbjct: 1 MSDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNNVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + + I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 347 NEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|345875731|ref|ZP_08827520.1| tRNA modification GTPase TrmE [Neisseria weaveri LMG 5135]
gi|343968429|gb|EGV36657.1| tRNA modification GTPase TrmE [Neisseria weaveri LMG 5135]
Length = 455
Score = 358 bits (920), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 205/478 (42%), Positives = 290/478 (60%), Gaps = 30/478 (6%)
Query: 2 LTKNSPIIG-IATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
++ SP I IAT PGRGGVG++R+SGKNL + + + K KPR A Y+ F +
Sbjct: 1 MSAPSPTIAAIATAPGRGGVGVVRISGKNLLPLAQQISGG--KTPKPRVALYTDFLDSDG 58
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID GL++YF AP S+TGEDVIEL GHGGP+++ MLL CL++G R+A PGEFTK
Sbjct: 59 QAIDNGLLLYFSAPASFTGEDVIELQGHGGPVVMDMLLQRCLQLGA----RMAEPGEFTK 114
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLNNKLDL Q E++ DLI+AS+ SAA+ A+ SL G FS+ I+ L+D+LI LR L+E +
Sbjct: 115 RAFLNNKLDLAQAESVADLIDASSRSAARMAVRSLKGAFSQHIHALVDELITLRMLVEAT 174
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE+ + L D +L +++ +L ++ ++ A++R G+NVVL+G PNVGKSSL
Sbjct: 175 LDFPEEDIDF-LEAADARGKLAELQGRLKTVLVSAEQGAILREGMNVVLVGAPNVGKSSL 233
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G D+AIVT IAGTTRD + + I ++ I DTAG +++ + VEKIG
Sbjct: 234 LNALAGDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAG-------LRETDDVVEKIG 286
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGH-----Q 355
IER+ ++ +D+ + + D R + + I+ + P N+ I + NK D +G
Sbjct: 287 IERSQKAVQEADVALILIDPREGINAKT-QTILDSLPENLKKIEIHNKTDLTGETVEMLS 345
Query: 356 KNINYKNNIAN-IYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+N + I LSA G++LL+ LL I Q S +LAR RH+ +L+ A
Sbjct: 346 DGLNTASGADTLIRLSAKTGEGLDLLKQALLKEI-GWQGESESLFLARSRHLTALHAAEA 404
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L A N +EL+AE LR + I G+ T +DLL IFS+FCIGK
Sbjct: 405 ELENAALCGN-------NQIELLAEHLRLAQTACNEITGEFTADDLLGVIFSRFCIGK 455
>gi|410620687|ref|ZP_11331547.1| tRNA modification GTPase mnmE [Glaciecola pallidula DSM 14239 =
ACAM 615]
gi|410159794|dbj|GAC26921.1| tRNA modification GTPase mnmE [Glaciecola pallidula DSM 14239 =
ACAM 615]
Length = 455
Score = 358 bits (920), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 199/471 (42%), Positives = 295/471 (62%), Gaps = 29/471 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKP-RFATYSSFFCKNNNIIDKG 66
I+ AT PGRGGVGI+R+SG + V + Q P R A Y F ++NN+ID+G
Sbjct: 8 IVAQATAPGRGGVGIVRVSGPK----AQDVALRLLGQCPPLRQARYLPFKDQHNNVIDQG 63
Query: 67 LVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNN 126
+ +YFKAPHS+TGEDV+EL GHGG +++ +LL +C+ I +RLA PGEF+++AFLN+
Sbjct: 64 IALYFKAPHSFTGEDVLELQGHGGQVVMELLLDACVAISD---IRLARPGEFSEQAFLND 120
Query: 127 KLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEE 186
KLDL Q EAI DLI+A+++ AAKSA+ SL G+FS+ IN L++++I LR +E + DFPEE
Sbjct: 121 KLDLTQAEAIADLIDATSKQAAKSALRSLQGEFSQQINTLVEQVIYLRMYVEAAIDFPEE 180
Query: 187 NQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVG 246
+ L +L+KI K+L I Q K+ +LIR+G++VV++G+PN GKSSL N+L G
Sbjct: 181 EIDF-LGDGKIQGDLLKICKQLDSIKHQAKQGSLIRDGMSVVIVGRPNAGKSSLLNALSG 239
Query: 247 SDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWV 306
+ AIVT IAGTTRD + + I I+ I DTAG ++++ +EVEKIGIER W
Sbjct: 240 KESAIVTHIAGTTRDVLKEHIHIDGMPLHIIDTAG-------LRESTDEVEKIGIERAWT 292
Query: 307 ELKNSDIIIYVQDA---RYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNN 363
E++ +D I+++ D+ + D+ + + P N + + NK D SG ++
Sbjct: 293 EIEKADRILFMVDSNEEKADQPSAIWPEFYARLPANPNITVIRNKCDESGETIGLSTSAT 352
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
+ +SA ++ GIN LR+ L + Q E +AR+RHI +L +A+ + I
Sbjct: 353 YPVLRISAKQQHGINELRDHLKQCMGFEQAGEDQ-VIARQRHIIALQQADEH-------I 404
Query: 424 NQSEKNFEKNL--ELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ E N+ EL+AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 405 KLGKSQLEDNMAGELLAEELRIAQQYLNEITGEFSSDDLLGKIFSSFCIGK 455
>gi|229843939|ref|ZP_04464080.1| tRNA modification GTPase TrmE [Haemophilus influenzae 6P18H1]
gi|229812933|gb|EEP48621.1| tRNA modification GTPase TrmE [Haemophilus influenzae 6P18H1]
Length = 452
Score = 358 bits (920), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 196/468 (41%), Positives = 283/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + + + K K PR A Y F + I+D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPLATKVAQAILGKCPK---PRMADYLPFKDADGTILDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK+P+S+TGEDV+EL GHGG ++L +LL L+I G+RLA PGEF+++AFLN+K
Sbjct: 62 ALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQID---GIRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E A +SA+ SL G+FSK +N L+D +I LRT +E S DFP+E
Sbjct: 119 LDLAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNALVDSVIYLRTYVEASIDFPDEE 178
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + N L I +L + + K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 179 IDFLADGKIEAN-LRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGR 237
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D +EVE+IGI R W E
Sbjct: 238 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT-------DEVERIGISRAWTE 290
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D II + D+ + D K + + P +PV V NKID +G Q + + +
Sbjct: 291 IEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGY 350
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G+ LLR L + +E +LAR RH+ +L++A +L + +
Sbjct: 351 QMISLSAQTHDGVKLLREHLKQAMGFQAGMEGG-FLARRRHLDALDKAAEHLQIGLVQLT 409
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 410 EFHAG-----ELLAEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452
>gi|28896776|ref|NP_796381.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus RIMD
2210633]
gi|153838496|ref|ZP_01991163.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus AQ3810]
gi|260361954|ref|ZP_05774959.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus K5030]
gi|260876535|ref|ZP_05888890.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus AN-5034]
gi|260897408|ref|ZP_05905904.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus Peru-466]
gi|417321630|ref|ZP_12108166.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus 10329]
gi|31340459|sp|Q87TR6.1|MNME_VIBPA RecName: Full=tRNA modification GTPase MnmE
gi|28804984|dbj|BAC58265.1| thiophene and furan oxidation protein ThdF [Vibrio parahaemolyticus
RIMD 2210633]
gi|149748119|gb|EDM58978.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus AQ3810]
gi|308087879|gb|EFO37574.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus Peru-466]
gi|308090361|gb|EFO40056.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus AN-5034]
gi|308114188|gb|EFO51728.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus K5030]
gi|328471230|gb|EGF42132.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus 10329]
Length = 453
Score = 358 bits (919), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 196/469 (41%), Positives = 285/469 (60%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG ++ + T K LKPR+A Y F ++ ++D+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGPKAN---QVALEVTGKTLKPRYAEYLPFQAEDGTVLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF PHS+TGEDV+EL GHGGP+++ ML+ L I G+R A PGEF++RAFLN+K
Sbjct: 63 ALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILGIA---GVRAARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FS+ I L++ LI+LR +E + DFPEE
Sbjct: 120 MDLTQAEAIADLIDASSEEAAKSALQSLQGQFSQRIQTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDFLADGK-VAGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + +EVEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVEKIGIERAWDE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQKNINYKNN 363
+ +D ++++ D TD K+I +F P +I + + NK D +G I + N+
Sbjct: 292 IAQADRVLFMVDGTTTDATD-PKEIWPDFVDRLPESIGMTVIRNKADQTGEDMGICHVND 350
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA G++ LRN L + + + E ++AR RH+ +L A +L I
Sbjct: 351 PTLIRLSAKTGAGVDALRNHLKECMGFSGNTEGG-FMARRRHLDALERAAQHLQ-----I 404
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 405 GQEQLEGYMAGEILAEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|415838512|ref|ZP_11520483.1| tRNA modification GTPase TrmE [Escherichia coli RN587/1]
gi|417281136|ref|ZP_12068436.1| tRNA modification GTPase TrmE [Escherichia coli 3003]
gi|425280167|ref|ZP_18671380.1| tRNA modification GTPase TrmE [Escherichia coli ARS4.2123]
gi|323189559|gb|EFZ74839.1| tRNA modification GTPase TrmE [Escherichia coli RN587/1]
gi|386245465|gb|EII87195.1| tRNA modification GTPase TrmE [Escherichia coli 3003]
gi|408197526|gb|EKI22785.1| tRNA modification GTPase TrmE [Escherichia coli ARS4.2123]
Length = 454
Score = 358 bits (919), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 195/474 (41%), Positives = 284/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +
Sbjct: 1 MSDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNNVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + + I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 347 NELNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|343499272|ref|ZP_08737255.1| tRNA modification GTPase TrmE [Vibrio tubiashii ATCC 19109]
gi|418479449|ref|ZP_13048531.1| tRNA modification GTPase TrmE [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
gi|342823147|gb|EGU57803.1| tRNA modification GTPase TrmE [Vibrio tubiashii ATCC 19109]
gi|384572960|gb|EIF03464.1| tRNA modification GTPase TrmE [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
Length = 453
Score = 358 bits (919), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 200/469 (42%), Positives = 283/469 (60%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG ++ + T K+L+PR+A Y F ++ + ID+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGP---LAAQVATEVTGKELRPRYAEYLPFNSQDGHQIDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF PHS+TGEDV+EL GHGGP+++ ML+ L+I G+R A PGEF++RAFLN+K
Sbjct: 63 ALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILQI---PGIRTARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AAKSA+ SL G FS IN L++ LI+LR +E + DFPEE
Sbjct: 120 LDLAQAEAIADLIDASSEEAAKSALQSLQGAFSGRINTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LADGKVAADLQTIIDNLAAVRKEATQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + +EVEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVEKIGIERAWDE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQKNINYKNN 363
+ +D ++++ D TD K+I +F P NI + + NK D +G I + N+
Sbjct: 292 IAQADRVLFMVDGTTTDATD-PKEIWPDFVDRLPDNIGMTVIRNKADQTGEDLGICHVND 350
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA G+ LR L + + E ++AR RH+ +L+ A +L I
Sbjct: 351 PTLIRLSAKTGDGVEALRTHLKECMGFAGGNEGG-FMARRRHLEALDRATEHLD-----I 404
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + LS I G+ +++DLL IFS FCIGK
Sbjct: 405 GQQQLEGYMAGEILAEELRITQQHLSEITGEFSSDDLLGRIFSSFCIGK 453
>gi|336122804|ref|YP_004564852.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Vibrio
anguillarum 775]
gi|335340527|gb|AEH31810.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Vibrio
anguillarum 775]
Length = 464
Score = 358 bits (919), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 202/475 (42%), Positives = 284/475 (59%), Gaps = 25/475 (5%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
L I+ AT PGRGGVGIIR+SG ++ + T K LKPR+A Y F ++
Sbjct: 11 LMSTDTIVAQATAPGRGGVGIIRVSGPK---AAQVALEVTGKTLKPRYAEYLPFKHQDGT 67
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ IYF PHS+TGEDV+EL GHGGP+++ ML+ L I GLR A PGEF++R
Sbjct: 68 ELDQGIAIYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILAIS---GLRAARPGEFSER 124
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+K+DL Q EAI DLI+AS+E AAKSA+ SL G+FSK I+ L+D LI+LR +E +
Sbjct: 125 AFLNDKMDLTQAEAIADLIDASSEEAAKSALHSLQGQFSKRIHTLVDSLIHLRIYVEAAI 184
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFPEE + L +L I L + ++ + A++R G+ VV+ G+PN GKSSL
Sbjct: 185 DFPEEEIDF-LADGKVAADLQNIIDNLDAVRKEANQGAILREGMKVVIAGRPNAGKSSLL 243
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G D AIVT IAGTTRD + + I I+ I DTAG+ D N +EVE+IGI
Sbjct: 244 NALSGKDSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAN-------DEVERIGI 296
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQKN 357
ER W E+ +D ++++ D TD K+I +F P NI + + NK+D +
Sbjct: 297 ERAWDEIAKADRVLFMVDGTTTDATD-PKEIWPDFVDRLPENIGMTVIRNKVDQTKESLG 355
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
I + N+ I LSA G++ LR L + + E ++AR RH+ +L A +L
Sbjct: 356 ICHVNSPTLIRLSAKTGEGVDALRTHLKECMGFAGGNEGG-FMARRRHLDALERAAQHL- 413
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+I Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 414 ----MIGQQQLEGYMAGEILAEELRLSQQHLNEITGEFSSDDLLGRIFSSFCIGK 464
>gi|432752169|ref|ZP_19986745.1| tRNA modification GTPase mnmE [Escherichia coli KTE29]
gi|431293099|gb|ELF83479.1| tRNA modification GTPase mnmE [Escherichia coli KTE29]
Length = 454
Score = 358 bits (919), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 285/474 (60%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +
Sbjct: 1 MSDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + +L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVMAELDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + + I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|429119371|ref|ZP_19180093.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Cronobacter
sakazakii 680]
gi|426326152|emb|CCK10830.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Cronobacter
sakazakii 680]
Length = 454
Score = 358 bits (919), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 192/474 (40%), Positives = 285/474 (60%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG+ + + V K K R+A Y F +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRVSGQQARDVAQAVLGKLPK---ARYADYLPFKDADGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLS---GVRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D TD + I P +P+ V NK D +G Q I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDATDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + I LSA G+++LRN L + ++E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHSLIRLSARTNEGVDVLRNHLKQSMGFDTSMEGG-FLARRRHLQALEDAANHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|261365695|ref|ZP_05978578.1| tRNA modification GTPase TrmE [Neisseria mucosa ATCC 25996]
gi|288565791|gb|EFC87351.1| tRNA modification GTPase TrmE [Neisseria mucosa ATCC 25996]
Length = 454
Score = 358 bits (919), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 206/478 (43%), Positives = 288/478 (60%), Gaps = 30/478 (6%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M I IAT PGRGGVG+IRLSGKNL + + + K KPR A Y+ F +
Sbjct: 1 MSASQPTIAAIATAPGRGGVGVIRLSGKNLLPLAQTLSGG--KTPKPRTALYTDFLGGDG 58
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID G+++YF AP S+TGEDVIEL GHGGP+++ MLLS CLE+G R+A PGEFTK
Sbjct: 59 QPIDNGILLYFAAPASFTGEDVIELQGHGGPVVMDMLLSRCLELGA----RMAEPGEFTK 114
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLNNKLDL Q E++ DLI+AS++SAA+ A+ SL G FS+ I+ L+D LI LR L+E +
Sbjct: 115 RAFLNNKLDLAQAESVADLIDASSKSAARMALRSLKGAFSQHIHELVDDLITLRMLVEAT 174
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE+ + L D +L ++ +L ++ ++ A++R G+NVVL+G PNVGKSSL
Sbjct: 175 LDFPEEDIDF-LEAADARGKLQALQGRLKTVLASAEQGAILREGMNVVLVGAPNVGKSSL 233
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G D+AIVT IAGTTRD + + I ++ I DTAG +++ + VE+IG
Sbjct: 234 LNALAGDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAG-------LRETDDVVEQIG 286
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IER+ + +D+ + + D R + + I+ + P + I + NK D +G +
Sbjct: 287 IERSRKAVSEADVALILIDPREGLNAKT-QAILNSLPEGLKKIEIHNKADLTGEPVAVR- 344
Query: 361 KNNIAN------IYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ +A I LSA G++LL++ LL + Q S +LAR RH+++L+EA
Sbjct: 345 SDGLAQTGADTVISLSAKTGAGLDLLKHALLQEV-GWQGESESLFLARSRHLNALHEAEA 403
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L A N +EL AE LR S I G+ T +DLL IFS+FCIGK
Sbjct: 404 ELENAALCDN-------NQIELFAEHLRLAQNACSEITGEFTADDLLGVIFSRFCIGK 454
>gi|375258119|ref|YP_005017289.1| tRNA modification GTPase TrmE [Klebsiella oxytoca KCTC 1686]
gi|365907597|gb|AEX03050.1| tRNA modification GTPase TrmE [Klebsiella oxytoca KCTC 1686]
Length = 454
Score = 358 bits (919), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 285/474 (60%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F + +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKARDVAQAVLGKLPK---PRYADYLPFKDSDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSTRVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D N +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAN-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHT---DFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D T D I P N+P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDATDPADIWPDFIARLPKNLPITVVRNKADITGETLGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N+ + + LSA G+++LRN L + +E +LAR RH+ +L++A YL
Sbjct: 347 SEVNDHSLVRLSARTGEGVDVLRNHLKQSMGFETNMEGG-FLARRRHLQALSDAAEYLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|433656324|ref|YP_007273703.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio
parahaemolyticus BB22OP]
gi|432507012|gb|AGB08529.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio
parahaemolyticus BB22OP]
Length = 453
Score = 358 bits (918), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 197/469 (42%), Positives = 284/469 (60%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG ++ + T K LKPR+A Y F ++ ++D+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGPKAN---QVALEVTGKTLKPRYAEYLPFQAEDGTVLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF PHS+TGEDV+EL GHGGP+++ ML+ L I G+R A PGEF++RAFLN+K
Sbjct: 63 ALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILGIA---GVRAARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FS+ I L++ LI+LR +E + DFPEE
Sbjct: 120 MDLTQAEAIADLIDASSEEAAKSALQSLQGQFSQHIQTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LADGKVAGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + +EVEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVEKIGIERAWDE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQKNINYKNN 363
+ +D ++++ D TD K+I +F P +I + + NK D +G I + N+
Sbjct: 292 IAQADRVLFMVDGTTTDATD-PKEIWPDFVDRLPESIGMTVIRNKADQTGEDMGICHVND 350
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA G++ LRN L + + + E ++AR RH+ +L A +L I
Sbjct: 351 PTLIRLSAKTGAGVDALRNHLKECMGFSGNTEGG-FMARRRHLDALERAAQHLQ-----I 404
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 405 GQEQLEGYMAGEILAEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|451972211|ref|ZP_21925422.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio alginolyticus
E0666]
gi|451931876|gb|EMD79559.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio alginolyticus
E0666]
Length = 453
Score = 358 bits (918), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 200/469 (42%), Positives = 282/469 (60%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG ++ + T K LKPR+A Y F ++ ++D+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGPKAN---QVALEVTGKTLKPRYAEYLPFKSEDGTVLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF PHS+TGEDV+EL GHGGP+++ ML+ L I G+R A PGEF++RAFLN+K
Sbjct: 63 ALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILGID---GIRAARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AAKSA+ SL G FS IN L++ LI+LR +E + DFPEE
Sbjct: 120 LDLAQAEAIADLIDASSEEAAKSALQSLQGAFSGRINTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDFLADGK-VAGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + +EVEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVEKIGIERAWDE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQKNINYKNN 363
+ +D ++++ D TD K I +F P NI + + NK D +G + I + NN
Sbjct: 292 IAQADRVLFMVDGTTTDATD-PKDIWPDFVDRLPDNIGITVIRNKADQTGEEMGICHVNN 350
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA GI LR L + + + E ++AR RH+ +L A +L I
Sbjct: 351 PTLIRLSAKTGAGIEALREHLKECMGFSGNSEGG-FMARRRHLDALERAAQHLQ-----I 404
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 405 GQEQLEGYMAGEILAEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|389842882|ref|YP_006344966.1| tRNA modification GTPase TrmE [Cronobacter sakazakii ES15]
gi|387853358|gb|AFK01456.1| tRNA modification GTPase TrmE [Cronobacter sakazakii ES15]
Length = 454
Score = 358 bits (918), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 192/474 (40%), Positives = 286/474 (60%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG+ ++ + V K K R+A Y F +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRVSGQQARNVAQAVLGKLPKA---RYADYLPFKDADGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNEVIGNLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D TD + I P +P+ V NK D +G Q I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDATDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + I LSA G+++LRN L + ++E +LAR RH+ +L +A +L
Sbjct: 347 SEANGHSLIRLSARTNEGVDVLRNHLKQSMGFDTSMEGG-FLARRRHLQALEDAANHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|342903755|ref|ZP_08725561.1| tRNA modification GTPase mnmE [Haemophilus haemolyticus M21621]
gi|341954582|gb|EGT81058.1| tRNA modification GTPase mnmE [Haemophilus haemolyticus M21621]
Length = 452
Score = 358 bits (918), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 197/468 (42%), Positives = 284/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + + V K K PR A Y F + ++D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPLATEVAQAVLGKCPK---PRMADYLPFKDDDGTVLDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK+P+S+TGEDV+EL GHGG ++L +LL L+I G+RLA PGEF+++AFLN+K
Sbjct: 62 ALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQID---GIRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AA+SA+ SL G+FSK +N L++ +I LRT +E S DFP+E
Sbjct: 119 LDLAQAEAIADLIDATSEQAARSALKSLQGEFSKKVNELVESVIYLRTYVEASIDFPDEE 178
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + N L I +L + + K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 179 IDFLADGKIEAN-LRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGR 237
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D +EVE+IGI R W E
Sbjct: 238 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT-------DEVERIGISRAWTE 290
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D II + D+ + D K + + P +PV V NKID + Q N + ++
Sbjct: 291 IEQADRIILMLDSSDPESADLSKVRSEFLAKLPTTLPVTIVRNKIDLNDEQANESEEDGY 350
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G+ LLR+ L + QT +LAR RH+ +L +A +L + +
Sbjct: 351 QIISLSAQTHDGVQLLRDHLKQAM-GFQTGMEGGFLARRRHLDALEKAAEHLQIGLVQLT 409
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 410 EFHAG-----ELLAEELRLVQTYLSEITGEFTSDDLLGNIFSSFCIGK 452
>gi|417844582|ref|ZP_12490623.1| tRNA modification GTPase mnmE [Haemophilus haemolyticus M21639]
gi|341956541|gb|EGT82962.1| tRNA modification GTPase mnmE [Haemophilus haemolyticus M21639]
Length = 461
Score = 358 bits (918), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 198/468 (42%), Positives = 284/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + + V K K PR A Y F + ++D+G+
Sbjct: 14 IVAQATAPGRGGIGILRVSGPLATEVAQAVLGKCPK---PRMADYLPFKDADGTVLDQGI 70
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK+P+S+TGEDV+EL GHGG ++L +LL L+I G+RLA PGEF+++AFLN+K
Sbjct: 71 ALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQID---GIRLARPGEFSEQAFLNDK 127
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AA+SA+ SL G+FSK +N L+D +I LRT +E S DFP+E
Sbjct: 128 LDLAQAEAIADLIDATSEQAARSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE 187
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + N L I +L + + K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 188 IDFLADGKIETN-LRGIINQLEDVSSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGR 246
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D +EVE+IGI R W E
Sbjct: 247 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT-------DEVERIGISRAWTE 299
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D II + D+ + D K + + P +PV V NKID + Q + + ++
Sbjct: 300 IEQADRIILMLDSSDPESADLRKVRSEFLAKLPTTLPVTIVRNKIDLNSAQASESEQDGY 359
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA GI LLR L + QT +LAR RH+ +L +A+ +L + +
Sbjct: 360 QIISLSAQTHDGIQLLREHLKQAM-GFQTGMEGGFLARRRHLDALEKASEHLQIGLVQLT 418
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 419 EFHAG-----ELLAEELRLVQTYLSEITGEFTSDDLLGNIFSSFCIGK 461
>gi|388458062|ref|ZP_10140357.1| tRNA modification GTPase TrmE [Fluoribacter dumoffii Tex-KL]
Length = 454
Score = 358 bits (918), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 204/474 (43%), Positives = 288/474 (60%), Gaps = 34/474 (7%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFF--------CKN 59
I+ IATPPGRGGVGIIRLSG +SI V K L PR AT+ SF+
Sbjct: 6 IVAIATPPGRGGVGIIRLSGPQAYSIA--VSLNGNKTLNPRLATFCSFYSISEKEILTPP 63
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFT 119
+++ID+G++IYFKAPHS+TGEDVIE+ HG P++L ML +C+++G R+A PGEF+
Sbjct: 64 HSLIDQGIMIYFKAPHSFTGEDVIEIQAHGSPVVLDMLTKACIQLGA----RMARPGEFS 119
Query: 120 KRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEF 179
+RAFLN+K+DL Q EAI DLI AS+++AA+ A+ SL G+FS IN L +K+I LR +E
Sbjct: 120 ERAFLNDKIDLTQAEAIADLIQASSQTAARMALKSLQGEFSNKINQLNEKIIYLRLYVEA 179
Query: 180 SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
+ DFP+E + LN + L I +L +I Q + ++R GL+VV+ G+PN GKS+
Sbjct: 180 AIDFPDEEIDF-LNDGKVAHLLTNILTELEEIRAQANQGVILREGLSVVIAGRPNAGKST 238
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N L G DVAIVT IAGTTRD + + I ++ I DTAG+ D + + VEK
Sbjct: 239 LINCLAGRDVAIVTEIAGTTRDIMREHILLDDIPLHIIDTAGLRDSD-------DPVEKE 291
Query: 300 GIERTWVELKNSDIIIYVQDAR-YDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
GI+R W ELK +D ++ V D + H ++I P +P+I V+NKID I
Sbjct: 292 GIKRAWQELKKADCVLLVVDMNDLEHHYSLSQEIKSALPPEVPIITVFNKIDTLERSAEI 351
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ +YLSA GI+ L+ ++ ++ Q E ++AR RH+ +L+EA L
Sbjct: 352 HGH----TVYLSAKSGEGIDGLKQ-VIKMVVGYQPNEGH-FIARRRHLLALDEAKNLL-- 403
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ Q + + EL+AEDLR H+ L I G+ +++DLL IFS FCIGK
Sbjct: 404 ---VTGQQQLTEHRAGELLAEDLRQAHQCLCEITGEFSSDDLLGRIFSSFCIGK 454
>gi|333895857|ref|YP_004469732.1| tRNA modification GTPase [Alteromonas sp. SN2]
gi|332995875|gb|AEF05930.1| tRNA modification GTPase [Alteromonas sp. SN2]
Length = 462
Score = 358 bits (918), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 196/472 (41%), Positives = 284/472 (60%), Gaps = 27/472 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I AT PGRGGVGI+R+SG +I E++ L PR ATY+ F N+ID+G+
Sbjct: 11 ITAQATAPGRGGVGIVRVSGPYAKAIAEVLVPTA---LTPRLATYTPFVDSQQNVIDQGI 67
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++FK P+S+TGEDV+EL GHGG +++ ML+ + L GK+ RLA PGEF+++AF+N+K
Sbjct: 68 ALFFKGPNSFTGEDVLELQGHGGQVVMDMLIDAVLSTGKA---RLANPGEFSEQAFINDK 124
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS++ AA+SA+ SL G+FS I L D++++LR +E + DFPEE
Sbjct: 125 LDLAQAEAIADLIDASSKQAARSALRSLQGEFSTQIQTLSDQIVHLRMYVEAAIDFPEEE 184
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L I L + +Q K+ +L+R G+ VV+ G+PN GKSSL N+L G
Sbjct: 185 IDF-LSDGKVSGDLAAILAHLQVVREQAKQGSLLREGMQVVIAGRPNAGKSSLLNALAGR 243
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
D AIVT IAGTTRD + + I IN I DTAG+ D + ++VEKIGIER W
Sbjct: 244 DSAIVTEIAGTTRDVLKEHIHINGMPVHIIDTAGLRD-------SPDKVEKIGIERAWQA 296
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINY---- 360
+ +D +++V D+ D K + + P IP + NK D S Q +N
Sbjct: 297 ISEADHVLFVTDSTTTDIADPYKIWPEFMARLPEGIPTTVIKNKADLSDLQVGLNQVKTE 356
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
++ I +SA + GI+ LR+ L + T E ++AR RH+ +L +A Y+
Sbjct: 357 HGDMPVINISAKQSDGIDTLRDHLAKTMGFDTTTEGQ-FIARRRHLDALEKAYEYV---- 411
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+I + + + EL+AE+LR H+ L I G+ T++DLL IFS FCIGK
Sbjct: 412 -VIGEQQLHDAMAGELLAEELRLAHQSLCEITGEFTSDDLLGKIFSSFCIGK 462
>gi|349610596|ref|ZP_08889936.1| tRNA modification GTPase mnmE [Neisseria sp. GT4A_CT1]
gi|348609723|gb|EGY59451.1| tRNA modification GTPase mnmE [Neisseria sp. GT4A_CT1]
Length = 454
Score = 357 bits (917), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 204/478 (42%), Positives = 288/478 (60%), Gaps = 30/478 (6%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M I IAT PGRGGVG+IRLSGKNL + + + K KPR A Y+ F +
Sbjct: 1 MSASQPTIAAIATAPGRGGVGVIRLSGKNLLPLAQTLSGG--KTPKPRTALYTDFLGGDG 58
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID G+++YF AP S+TGEDV+EL GHGGP+++ MLL+ CLE+G R+A PGEFTK
Sbjct: 59 QPIDNGILLYFAAPASFTGEDVVELQGHGGPVVMDMLLAHCLELGA----RMAEPGEFTK 114
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLNNKLDL Q E++ DLI+AS++SAA+ A+ SL G FS+ I+ L+D LI LR L+E +
Sbjct: 115 RAFLNNKLDLAQAESVADLIDASSKSAARMALRSLKGAFSEHIHELVDDLITLRMLVEAT 174
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE+ + L D +L ++ +L ++ ++ A++R G+NVVL+G PNVGKSSL
Sbjct: 175 LDFPEEDIDF-LEAADARGKLQALQGRLKTVLASAEQGAILREGMNVVLVGAPNVGKSSL 233
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G D+AIVT IAGTTRD + + I ++ I DTAG +++ + VE+IG
Sbjct: 234 LNALAGDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAG-------LRETDDVVEQIG 286
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IER+ + +D+ + + D R + + I+ + P + I + NK D +G +
Sbjct: 287 IERSRKAVSEADVALILIDPREGVNAKT-QAILNSLPAGLKKIEIHNKADLTGEPVAVR- 344
Query: 361 KNNIAN------IYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ +A I LSA G++LL++ LL + Q S +LAR RH+++L+EA
Sbjct: 345 SDGLAQTGADTVISLSAKTGAGLDLLKHVLLQEV-GWQGESESLFLARSRHLNALHEAEA 403
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L A N +EL AE LR S I G+ T +DLL IFS+FCIGK
Sbjct: 404 ELENAALCDN-------NQIELFAEHLRLAQNACSEITGEFTADDLLGVIFSRFCIGK 454
>gi|432491547|ref|ZP_19733406.1| tRNA modification GTPase mnmE [Escherichia coli KTE213]
gi|432720872|ref|ZP_19955829.1| tRNA modification GTPase mnmE [Escherichia coli KTE9]
gi|432794982|ref|ZP_20029054.1| tRNA modification GTPase mnmE [Escherichia coli KTE78]
gi|432796493|ref|ZP_20030527.1| tRNA modification GTPase mnmE [Escherichia coli KTE79]
gi|432841572|ref|ZP_20075027.1| tRNA modification GTPase mnmE [Escherichia coli KTE140]
gi|433205466|ref|ZP_20389209.1| tRNA modification GTPase mnmE [Escherichia coli KTE95]
gi|431017257|gb|ELD30769.1| tRNA modification GTPase mnmE [Escherichia coli KTE213]
gi|431258492|gb|ELF51256.1| tRNA modification GTPase mnmE [Escherichia coli KTE9]
gi|431335572|gb|ELG22703.1| tRNA modification GTPase mnmE [Escherichia coli KTE78]
gi|431348031|gb|ELG34904.1| tRNA modification GTPase mnmE [Escherichia coli KTE79]
gi|431385805|gb|ELG69791.1| tRNA modification GTPase mnmE [Escherichia coli KTE140]
gi|431715927|gb|ELJ80070.1| tRNA modification GTPase mnmE [Escherichia coli KTE95]
Length = 454
Score = 357 bits (917), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 195/474 (41%), Positives = 284/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +
Sbjct: 1 MSDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + + I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ S EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGSWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|24114984|ref|NP_709494.1| tRNA modification GTPase TrmE [Shigella flexneri 2a str. 301]
gi|30065014|ref|NP_839185.1| tRNA modification GTPase TrmE [Shigella flexneri 2a str. 2457T]
gi|110807604|ref|YP_691124.1| tRNA modification GTPase TrmE [Shigella flexneri 5 str. 8401]
gi|384545280|ref|YP_005729344.1| tRNA modification GTPase trmE [Shigella flexneri 2002017]
gi|415858301|ref|ZP_11532871.1| tRNA modification GTPase TrmE [Shigella flexneri 2a str. 2457T]
gi|417704559|ref|ZP_12353652.1| tRNA modification GTPase TrmE [Shigella flexneri K-218]
gi|417709811|ref|ZP_12358825.1| tRNA modification GTPase TrmE [Shigella flexneri VA-6]
gi|417714766|ref|ZP_12363716.1| tRNA modification GTPase TrmE [Shigella flexneri K-272]
gi|417719664|ref|ZP_12368544.1| tRNA modification GTPase TrmE [Shigella flexneri K-227]
gi|417725471|ref|ZP_12374254.1| tRNA modification GTPase TrmE [Shigella flexneri K-304]
gi|417730752|ref|ZP_12379434.1| tRNA modification GTPase TrmE [Shigella flexneri K-671]
gi|417735820|ref|ZP_12384456.1| tRNA modification GTPase TrmE [Shigella flexneri 2747-71]
gi|417740661|ref|ZP_12389227.1| tRNA modification GTPase TrmE [Shigella flexneri 4343-70]
gi|417745678|ref|ZP_12394195.1| tRNA modification GTPase TrmE [Shigella flexneri 2930-71]
gi|417830119|ref|ZP_12476657.1| tRNA modification GTPase TrmE [Shigella flexneri J1713]
gi|418259683|ref|ZP_12882410.1| tRNA modification GTPase TrmE [Shigella flexneri 6603-63]
gi|420322768|ref|ZP_14824585.1| tRNA modification GTPase TrmE [Shigella flexneri 2850-71]
gi|420333624|ref|ZP_14835259.1| tRNA modification GTPase TrmE [Shigella flexneri K-1770]
gi|420344177|ref|ZP_14845634.1| tRNA modification GTPase TrmE [Shigella flexneri K-404]
gi|424839979|ref|ZP_18264616.1| tRNA modification GTPase TrmE [Shigella flexneri 5a str. M90T]
gi|46577445|sp|Q83PL3.1|MNME_SHIFL RecName: Full=tRNA modification GTPase MnmE
gi|123146522|sp|Q0SYP6.1|MNME_SHIF8 RecName: Full=tRNA modification GTPase MnmE
gi|24054236|gb|AAN45201.1| GTP-binding protein in thiophene and furan oxidation [Shigella
flexneri 2a str. 301]
gi|30043275|gb|AAP18996.1| GTP-binding protein in thiophene and furan oxidation [Shigella
flexneri 2a str. 2457T]
gi|110617152|gb|ABF05819.1| GTP-binding protein in thiophene and furan oxidation [Shigella
flexneri 5 str. 8401]
gi|281603067|gb|ADA76051.1| tRNA modification GTPase trmE [Shigella flexneri 2002017]
gi|313647714|gb|EFS12162.1| tRNA modification GTPase TrmE [Shigella flexneri 2a str. 2457T]
gi|332750527|gb|EGJ80936.1| tRNA modification GTPase TrmE [Shigella flexneri K-671]
gi|332750698|gb|EGJ81106.1| tRNA modification GTPase TrmE [Shigella flexneri 4343-70]
gi|332751721|gb|EGJ82119.1| tRNA modification GTPase TrmE [Shigella flexneri 2747-71]
gi|332764077|gb|EGJ94314.1| tRNA modification GTPase TrmE [Shigella flexneri 2930-71]
gi|332996037|gb|EGK15664.1| tRNA modification GTPase TrmE [Shigella flexneri VA-6]
gi|332997083|gb|EGK16699.1| tRNA modification GTPase TrmE [Shigella flexneri K-218]
gi|332997872|gb|EGK17480.1| tRNA modification GTPase TrmE [Shigella flexneri K-272]
gi|333013208|gb|EGK32581.1| tRNA modification GTPase TrmE [Shigella flexneri K-304]
gi|333013667|gb|EGK33032.1| tRNA modification GTPase TrmE [Shigella flexneri K-227]
gi|335573350|gb|EGM59707.1| tRNA modification GTPase TrmE [Shigella flexneri J1713]
gi|383469031|gb|EID64052.1| tRNA modification GTPase TrmE [Shigella flexneri 5a str. M90T]
gi|391244327|gb|EIQ03611.1| tRNA modification GTPase TrmE [Shigella flexneri 2850-71]
gi|391244780|gb|EIQ04057.1| tRNA modification GTPase TrmE [Shigella flexneri K-1770]
gi|391261460|gb|EIQ20507.1| tRNA modification GTPase TrmE [Shigella flexneri K-404]
gi|397894195|gb|EJL10644.1| tRNA modification GTPase TrmE [Shigella flexneri 6603-63]
Length = 454
Score = 357 bits (917), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 284/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +
Sbjct: 1 MSDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + + I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|329123024|ref|ZP_08251595.1| tRNA modification GTPase TrmE [Haemophilus aegyptius ATCC 11116]
gi|327471955|gb|EGF17395.1| tRNA modification GTPase TrmE [Haemophilus aegyptius ATCC 11116]
Length = 461
Score = 357 bits (917), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 197/468 (42%), Positives = 284/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + + + K K PR A Y F + I+D+G+
Sbjct: 14 IVAQATAPGRGGIGILRVSGPLATKVAQAILGKCPK---PRMADYLPFKDADGTILDQGI 70
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK+P+S+TGEDV+EL GHGG ++L +LL L+I G+RLA PGEF+++AFLN+K
Sbjct: 71 ALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQID---GIRLARPGEFSEQAFLNDK 127
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI A++E A +SA+ SL G+FSK +N L+D +I LRT +E S DFP+E
Sbjct: 128 LDLAQAEAIADLIYATSEQAVRSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE 187
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + N L I +L + + K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 188 IDFLADGKIEAN-LRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGR 246
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D I+EVE+IGI R W E
Sbjct: 247 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRD-------AIDEVERIGISRAWTE 299
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D II + D+ + D K + + P +PV V NKID +G Q + + +
Sbjct: 300 IEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGY 359
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G+ LLR L + +E +LAR RH+ +L++A +L + +
Sbjct: 360 QMISLSAHTHDGVQLLREHLKQAMGFQAGMEGG-FLARRRHLDALDKAAEHLQIGLVQLT 418
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 419 EFHEG-----ELLAEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 461
>gi|88860621|ref|ZP_01135258.1| predicted GTPase [Pseudoalteromonas tunicata D2]
gi|88817216|gb|EAR27034.1| predicted GTPase [Pseudoalteromonas tunicata D2]
Length = 454
Score = 357 bits (917), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 204/471 (43%), Positives = 288/471 (61%), Gaps = 29/471 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I AT PGRGGVGIIR+SGK S+ E + K K R+A Y F + + +D+G+
Sbjct: 7 IAAQATAPGRGGVGIIRVSGKLARSVAEQLLGKCPKT---RYAEYVPFKALSGDELDQGI 63
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F+ P+S+TGEDV+EL GHGGP++L MLL EI K +RLA PGEF++RAF+N+K
Sbjct: 64 ALFFEGPNSFTGEDVLELQGHGGPVVLDMLLK---EICKINDVRLAKPGEFSERAFMNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLINA++E AAKSA+ SL G+FSK I+ L++++I+LR +E + DFP+E
Sbjct: 121 LDLTQAEAIADLINATSEQAAKSALHSLQGEFSKHISTLVEQVIHLRMYVEAAIDFPDEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L I +L ++ Q K+ ++IR G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDF-LSDGKVSADLNAIISQLSEVTNQAKQGSIIREGMRVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI---PDINSKIKKNINEVEKIGIERT 304
D AIVT IAGTTRD + + I I+ I DTAG+ PDI VE+IGIER
Sbjct: 240 DAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDSPDI----------VEQIGIERA 289
Query: 305 WVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYK 361
W E+K +D ++++ D TD + I P N+ + + NKID SG Q +I
Sbjct: 290 WDEIKQADRVLFMLDGTESTDTDPAAIWPEFIDKLPANLGITVIRNKIDLSGEQVSIQEH 349
Query: 362 NNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIK 421
+N I LSA GI+L+R L + E ++AR RH+ +L+ A Y+L
Sbjct: 350 HNHPVISLSAKNNQGIDLVREHLKQCMGYQGATEGG-FMARRRHLEALSNAAYHLQTG-- 406
Query: 422 IINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+Q E + E++AE+LR + L+ I G+ T++DLL IFS FCIGK
Sbjct: 407 -KDQLEMHIAG--EILAEELRLTQQFLNEITGEFTSDDLLGKIFSSFCIGK 454
>gi|417790221|ref|ZP_12437799.1| tRNA modification GTPase TrmE [Cronobacter sakazakii E899]
gi|429112317|ref|ZP_19174087.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Cronobacter
malonaticus 507]
gi|429117494|ref|ZP_19178412.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Cronobacter
sakazakii 701]
gi|449310178|ref|YP_007442534.1| tRNA modification GTPase TrmE [Cronobacter sakazakii SP291]
gi|333955731|gb|EGL73456.1| tRNA modification GTPase TrmE [Cronobacter sakazakii E899]
gi|426313474|emb|CCK00200.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Cronobacter
malonaticus 507]
gi|426320623|emb|CCK04525.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Cronobacter
sakazakii 701]
gi|449100211|gb|AGE88245.1| tRNA modification GTPase TrmE [Cronobacter sakazakii SP291]
Length = 454
Score = 357 bits (917), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 192/474 (40%), Positives = 285/474 (60%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG+ + + V K K R+A Y F +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRVSGQQARDVAQAVLGKLPKA---RYADYLPFKDADGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D TD + I P +P+ V NK D +G Q I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDATDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + I LSA G+++LRN L + ++E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHSLIRLSARTNEGVDVLRNHLKQSMGFDTSMEGG-FLARRRHLQALEDAANHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|262392791|ref|YP_003284645.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio sp. Ex25]
gi|262336385|gb|ACY50180.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio sp. Ex25]
Length = 453
Score = 357 bits (917), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 199/469 (42%), Positives = 282/469 (60%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG ++ + T K LKPR+A Y F ++ ++D+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGPKAN---QVALEVTGKTLKPRYAEYLPFKSEDGTVLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF PHS+TGEDV+EL GHGGP+++ ML+ L I G+R A PGEF++RAFLN+K
Sbjct: 63 ALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILGID---GIRAARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AAKSA+ SL G FS IN L++ LI+LR +E + DFPEE
Sbjct: 120 LDLAQAEAIADLIDASSEEAAKSALQSLQGAFSGRINTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDFLADGK-VAGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + +EVEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVEKIGIERAWDE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQKNINYKNN 363
+ +D ++++ D TD K I +F P NI + + NK D +G + I + NN
Sbjct: 292 IAQADRVLFMVDGTTTDATD-PKDIWPDFVDRLPDNIGITVIRNKADQTGEEMGICHVNN 350
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA G+ LR L + + + E ++AR RH+ +L A +L I
Sbjct: 351 PTLIRLSAKTGAGVEALREHLKECMGFSGNSEGG-FMARRRHLDALERAAQHLQ-----I 404
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 405 GQEQLEGYMAGEILAEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|432367192|ref|ZP_19610306.1| tRNA modification GTPase mnmE [Escherichia coli KTE10]
gi|430891007|gb|ELC13555.1| tRNA modification GTPase mnmE [Escherichia coli KTE10]
Length = 454
Score = 357 bits (917), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 284/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +
Sbjct: 1 MSDNDTIVAQATPPGRGGVGILRISGVKAREVAETVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + + I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|156936085|ref|YP_001440001.1| tRNA modification GTPase TrmE [Cronobacter sakazakii ATCC BAA-894]
gi|166200478|sp|A7MN03.1|MNME_ENTS8 RecName: Full=tRNA modification GTPase MnmE
gi|156534339|gb|ABU79165.1| hypothetical protein ESA_03979 [Cronobacter sakazakii ATCC BAA-894]
Length = 454
Score = 357 bits (917), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 192/474 (40%), Positives = 286/474 (60%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG+ ++ + V K K R+A Y F +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRVSGQQARNVAQAVLGKLPKA---RYADYLPFKDADGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D TD + I P +P+ V NK D +G Q I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDATDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + I LSA G+++LRN L + ++E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHSLIRLSARTNEGVDVLRNHLKQSMGFDTSMEGG-FLARRRHLQALEDAANHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|193063795|ref|ZP_03044882.1| tRNA modification GTPase TrmE [Escherichia coli E22]
gi|194428063|ref|ZP_03060607.1| tRNA modification GTPase TrmE [Escherichia coli B171]
gi|260846509|ref|YP_003224287.1| GTPase TrmE [Escherichia coli O103:H2 str. 12009]
gi|293464030|ref|ZP_06664444.1| tRNA modification GTPase TrmE [Escherichia coli B088]
gi|300815046|ref|ZP_07095271.1| tRNA modification GTPase TrmE [Escherichia coli MS 107-1]
gi|415799854|ref|ZP_11499066.1| tRNA modification GTPase TrmE [Escherichia coli E128010]
gi|415831379|ref|ZP_11517096.1| tRNA modification GTPase TrmE [Escherichia coli OK1357]
gi|415873388|ref|ZP_11540643.1| tRNA modification GTPase TrmE [Escherichia coli MS 79-10]
gi|417149361|ref|ZP_11989452.1| tRNA modification GTPase TrmE [Escherichia coli 1.2264]
gi|417157195|ref|ZP_11994819.1| tRNA modification GTPase TrmE [Escherichia coli 96.0497]
gi|417176954|ref|ZP_12006750.1| tRNA modification GTPase TrmE [Escherichia coli 3.2608]
gi|417249357|ref|ZP_12041141.1| tRNA modification GTPase TrmE [Escherichia coli 4.0967]
gi|417583333|ref|ZP_12234132.1| tRNA modification GTPase TrmE [Escherichia coli STEC_B2F1]
gi|417625827|ref|ZP_12276117.1| tRNA modification GTPase TrmE [Escherichia coli STEC_H.1.8]
gi|417669296|ref|ZP_12318833.1| tRNA modification GTPase TrmE [Escherichia coli STEC_O31]
gi|419291930|ref|ZP_13834013.1| tRNA modification GTPase TrmE [Escherichia coli DEC11A]
gi|419297210|ref|ZP_13839245.1| tRNA modification GTPase TrmE [Escherichia coli DEC11B]
gi|419302803|ref|ZP_13844794.1| tRNA modification GTPase TrmE [Escherichia coli DEC11C]
gi|419308745|ref|ZP_13850634.1| tRNA modification GTPase TrmE [Escherichia coli DEC11D]
gi|419313768|ref|ZP_13855626.1| tRNA modification GTPase TrmE [Escherichia coli DEC11E]
gi|419319211|ref|ZP_13861006.1| tRNA modification GTPase TrmE [Escherichia coli DEC12A]
gi|419325456|ref|ZP_13867137.1| tRNA modification GTPase TrmE [Escherichia coli DEC12B]
gi|419331428|ref|ZP_13873020.1| tRNA modification GTPase TrmE [Escherichia coli DEC12C]
gi|419336895|ref|ZP_13878406.1| tRNA modification GTPase TrmE [Escherichia coli DEC12D]
gi|419342299|ref|ZP_13883752.1| tRNA modification GTPase TrmE [Escherichia coli DEC12E]
gi|419872408|ref|ZP_14394445.1| tRNA modification GTPase TrmE [Escherichia coli O103:H2 str.
CVM9450]
gi|420393851|ref|ZP_14893095.1| tRNA modification GTPase TrmE [Escherichia coli EPEC C342-62]
gi|422764107|ref|ZP_16817859.1| tRNA modification GTPase TrmE [Escherichia coli E1167]
gi|432483129|ref|ZP_19725076.1| tRNA modification GTPase mnmE [Escherichia coli KTE210]
gi|432807959|ref|ZP_20041872.1| tRNA modification GTPase mnmE [Escherichia coli KTE91]
gi|432829331|ref|ZP_20062946.1| tRNA modification GTPase mnmE [Escherichia coli KTE135]
gi|432931434|ref|ZP_20131491.1| tRNA modification GTPase mnmE [Escherichia coli KTE184]
gi|433094109|ref|ZP_20280357.1| tRNA modification GTPase mnmE [Escherichia coli KTE138]
gi|433195768|ref|ZP_20379736.1| tRNA modification GTPase mnmE [Escherichia coli KTE90]
gi|192930510|gb|EDV83117.1| tRNA modification GTPase TrmE [Escherichia coli E22]
gi|194413821|gb|EDX30099.1| tRNA modification GTPase TrmE [Escherichia coli B171]
gi|257761656|dbj|BAI33153.1| GTPase TrmE [Escherichia coli O103:H2 str. 12009]
gi|291321662|gb|EFE61098.1| tRNA modification GTPase TrmE [Escherichia coli B088]
gi|300531938|gb|EFK53000.1| tRNA modification GTPase TrmE [Escherichia coli MS 107-1]
gi|323161042|gb|EFZ46961.1| tRNA modification GTPase TrmE [Escherichia coli E128010]
gi|323182501|gb|EFZ67905.1| tRNA modification GTPase TrmE [Escherichia coli OK1357]
gi|324115941|gb|EGC09867.1| tRNA modification GTPase TrmE [Escherichia coli E1167]
gi|342930999|gb|EGU99721.1| tRNA modification GTPase TrmE [Escherichia coli MS 79-10]
gi|345334395|gb|EGW66839.1| tRNA modification GTPase TrmE [Escherichia coli STEC_B2F1]
gi|345373075|gb|EGX05037.1| tRNA modification GTPase TrmE [Escherichia coli STEC_H.1.8]
gi|378125373|gb|EHW86774.1| tRNA modification GTPase TrmE [Escherichia coli DEC11A]
gi|378138537|gb|EHW99791.1| tRNA modification GTPase TrmE [Escherichia coli DEC11B]
gi|378144516|gb|EHX05688.1| tRNA modification GTPase TrmE [Escherichia coli DEC11D]
gi|378146644|gb|EHX07795.1| tRNA modification GTPase TrmE [Escherichia coli DEC11C]
gi|378155687|gb|EHX16746.1| tRNA modification GTPase TrmE [Escherichia coli DEC11E]
gi|378160931|gb|EHX21916.1| tRNA modification GTPase TrmE [Escherichia coli DEC12B]
gi|378165347|gb|EHX26283.1| tRNA modification GTPase TrmE [Escherichia coli DEC12A]
gi|378165699|gb|EHX26630.1| tRNA modification GTPase TrmE [Escherichia coli DEC12C]
gi|378179218|gb|EHX39953.1| tRNA modification GTPase TrmE [Escherichia coli DEC12D]
gi|378183212|gb|EHX43858.1| tRNA modification GTPase TrmE [Escherichia coli DEC12E]
gi|386161582|gb|EIH23385.1| tRNA modification GTPase TrmE [Escherichia coli 1.2264]
gi|386165945|gb|EIH32465.1| tRNA modification GTPase TrmE [Escherichia coli 96.0497]
gi|386179646|gb|EIH57125.1| tRNA modification GTPase TrmE [Escherichia coli 3.2608]
gi|386219678|gb|EII36142.1| tRNA modification GTPase TrmE [Escherichia coli 4.0967]
gi|388334802|gb|EIL01384.1| tRNA modification GTPase TrmE [Escherichia coli O103:H2 str.
CVM9450]
gi|391309930|gb|EIQ67593.1| tRNA modification GTPase TrmE [Escherichia coli EPEC C342-62]
gi|397783126|gb|EJK93987.1| tRNA modification GTPase TrmE [Escherichia coli STEC_O31]
gi|431003434|gb|ELD18917.1| tRNA modification GTPase mnmE [Escherichia coli KTE210]
gi|431352816|gb|ELG39581.1| tRNA modification GTPase mnmE [Escherichia coli KTE91]
gi|431382274|gb|ELG66614.1| tRNA modification GTPase mnmE [Escherichia coli KTE135]
gi|431459582|gb|ELH39875.1| tRNA modification GTPase mnmE [Escherichia coli KTE184]
gi|431606833|gb|ELI76205.1| tRNA modification GTPase mnmE [Escherichia coli KTE138]
gi|431713040|gb|ELJ77299.1| tRNA modification GTPase mnmE [Escherichia coli KTE90]
Length = 454
Score = 357 bits (917), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 285/474 (60%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +
Sbjct: 1 MSDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + +L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVIAELDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + + I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|82779236|ref|YP_405585.1| tRNA modification GTPase TrmE [Shigella dysenteriae Sd197]
gi|293417178|ref|ZP_06659805.1| tRNA modification GTPase TrmE [Escherichia coli B185]
gi|309784244|ref|ZP_07678883.1| tRNA modification GTPase TrmE [Shigella dysenteriae 1617]
gi|422836033|ref|ZP_16884083.1| tRNA modification GTPase mnmE [Escherichia coli E101]
gi|432451979|ref|ZP_19694233.1| tRNA modification GTPase mnmE [Escherichia coli KTE193]
gi|432950441|ref|ZP_20144713.1| tRNA modification GTPase mnmE [Escherichia coli KTE196]
gi|433035640|ref|ZP_20223328.1| tRNA modification GTPase mnmE [Escherichia coli KTE112]
gi|433045252|ref|ZP_20232725.1| tRNA modification GTPase mnmE [Escherichia coli KTE117]
gi|123561062|sp|Q329B1.1|MNME_SHIDS RecName: Full=tRNA modification GTPase MnmE
gi|81243384|gb|ABB64094.1| GTP-binding protein [Shigella dysenteriae Sd197]
gi|291431209|gb|EFF04202.1| tRNA modification GTPase TrmE [Escherichia coli B185]
gi|308927751|gb|EFP73219.1| tRNA modification GTPase TrmE [Shigella dysenteriae 1617]
gi|371610173|gb|EHN98704.1| tRNA modification GTPase mnmE [Escherichia coli E101]
gi|430977129|gb|ELC93980.1| tRNA modification GTPase mnmE [Escherichia coli KTE193]
gi|431452506|gb|ELH32950.1| tRNA modification GTPase mnmE [Escherichia coli KTE196]
gi|431546116|gb|ELI20758.1| tRNA modification GTPase mnmE [Escherichia coli KTE112]
gi|431552454|gb|ELI26414.1| tRNA modification GTPase mnmE [Escherichia coli KTE117]
Length = 454
Score = 357 bits (917), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 195/474 (41%), Positives = 284/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +
Sbjct: 1 MSDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + + I P +P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|300925531|ref|ZP_07141405.1| tRNA modification GTPase TrmE, partial [Escherichia coli MS 182-1]
gi|300418356|gb|EFK01667.1| tRNA modification GTPase TrmE [Escherichia coli MS 182-1]
Length = 478
Score = 357 bits (917), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 194/475 (40%), Positives = 285/475 (60%), Gaps = 23/475 (4%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
+++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F +
Sbjct: 24 IMSDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKLPK---PRYADYLPFKDADG 80
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++
Sbjct: 81 SVLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSE 137
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 138 RAFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAA 197
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 198 IDFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSL 256
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IG
Sbjct: 257 LNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIG 309
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
IER W E++ +D ++++ D D + + I P +P+ V NK D +G
Sbjct: 310 IERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG 369
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
++ N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 370 MSEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQ 428
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 429 QGKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 478
>gi|262040470|ref|ZP_06013713.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259042223|gb|EEW43251.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 454
Score = 357 bits (917), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 195/474 (41%), Positives = 282/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKARDVAQAVLGKLPK---PRYADYLPFNDVDGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 58 PLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLHEVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D N +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAN-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E+ +D ++++ D D + I+ P +P+ V NK D +G I
Sbjct: 287 ERAWQEIAQADRVLFMVDGTTTGAVDPAEIWPDFIERLPAKLPITVVRNKADVTGEALGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N ++I LSA G+ +LRN L + +E +LAR RH+ +L EA +L
Sbjct: 347 SEVNGHSHIRLSARTGEGVEVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEEAANHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|269965284|ref|ZP_06179405.1| tRNA modification GTPase [Vibrio alginolyticus 40B]
gi|269830085|gb|EEZ84313.1| tRNA modification GTPase [Vibrio alginolyticus 40B]
Length = 453
Score = 357 bits (917), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 199/469 (42%), Positives = 282/469 (60%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG ++ + T K LKPR+A Y F ++ ++D+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGPKAN---QVALEVTGKTLKPRYAEYLPFKSEDGTVLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF PHS+TGEDV+EL GHGGP+++ ML+ L I G+R A PGEF++RAFLN+K
Sbjct: 63 ALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILGID---GIRAARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AAKSA+ SL G FS IN L++ LI+LR +E + DFPEE
Sbjct: 120 LDLAQAEAIADLIDASSEEAAKSALQSLQGAFSGRINTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDFLADGK-VAGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + +EVEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVEKIGIERAWDE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQKNINYKNN 363
+ +D ++++ D TD K I +F P NI + + NK D +G I + NN
Sbjct: 292 IAQADRVLFMVDGTTTDATD-PKDIWPDFVDRLPDNIGITVIRNKADQTGEDMGICHVNN 350
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA G+ LR+ L + + + E ++AR RH+ +L A +L I
Sbjct: 351 PTLIRLSAKTGAGVEALRDHLKECMGFSGNSEGG-FMARRRHLDALERAAQHLQ-----I 404
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 405 GQEQLEGYMAGEILAEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|85712623|ref|ZP_01043670.1| tRNA modification GTPase [Idiomarina baltica OS145]
gi|85693614|gb|EAQ31565.1| tRNA modification GTPase [Idiomarina baltica OS145]
Length = 467
Score = 357 bits (916), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 192/473 (40%), Positives = 287/473 (60%), Gaps = 27/473 (5%)
Query: 5 NSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIID 64
N I+ ATPPGRGGVGI+R+SG + + PR A Y F+ K +++D
Sbjct: 17 NDSIVAQATPPGRGGVGIVRVSGPQAKQVASALIGHCPP---PRKAEYVPFYDKEGHLLD 73
Query: 65 KGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFL 124
+G+ ++FK P+S+TGEDV+EL GHGGP+++ M++ + LE+ +R A PGEF++RAFL
Sbjct: 74 EGIALFFKGPNSFTGEDVLELQGHGGPVLIDMIIKAILELPD---IRPARPGEFSERAFL 130
Query: 125 NNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFP 184
N+KLDL Q EAI DLI+ ++E AAK+A+ SL G+FS I++L+D +I+LR +E + DFP
Sbjct: 131 NDKLDLTQAEAIADLIDTNSEQAAKAALQSLKGEFSHKIDVLVDAVIHLRMYVEAAIDFP 190
Query: 185 EENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSL 244
+E + L+ N+L +I +L I QQ K+ L+R G+ +V+ G+PN GKSSL N+L
Sbjct: 191 DEEIDF-LSDGKVANDLAEIIDQLFHIEQQAKQGTLMREGMRIVIAGRPNAGKSSLLNAL 249
Query: 245 VGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304
G + AIVT IAGTTRD + + IQI+ I DTAG+ D + ++VE+IGIER
Sbjct: 250 AGRESAIVTEIAGTTRDVLREHIQIDGMPLHIIDTAGLRD-------SPDQVERIGIERA 302
Query: 305 WVELKNSDIIIYVQDARYDKHTDFD---KKIIKNFPMNIPVIYVWNKIDYSGHQKNINYK 361
W E++ +D ++++ D++ D + P ++P + NKID + +
Sbjct: 303 WDEIRQADRVLFMVDSQETSAIHPDDIWPEFFAQLPDDMPFTVIRNKIDLTQENTGLTEH 362
Query: 362 NNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIK 421
N I I LSA GI LR L + + T E S ++AR RH+ +L +A +L
Sbjct: 363 NGIPVIQLSAKTGHGIEQLREHLKHCVGYSATSEGS-FMARRRHLDALEKAKSHLLLG-- 419
Query: 422 IINQSEKNFEKNL--ELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ E NL EL+AE+LR + L+ I G+ T++DLL IF FCIGK
Sbjct: 420 -----QEHLELNLAGELLAEELRLTQQHLNEITGEFTSDDLLGQIFGSFCIGK 467
>gi|218702556|ref|YP_002410185.1| tRNA modification GTPase TrmE [Escherichia coli IAI39]
gi|254811479|sp|B7NR09.1|MNME_ECO7I RecName: Full=tRNA modification GTPase MnmE
gi|218372542|emb|CAR20417.1| GTPase [Escherichia coli IAI39]
Length = 454
Score = 357 bits (916), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 284/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +
Sbjct: 1 MSDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + + I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWSEFIARLPAKLPITVVRNKADITGETLGM 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|260774545|ref|ZP_05883458.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio metschnikovii
CIP 69.14]
gi|260610451|gb|EEX35657.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio metschnikovii
CIP 69.14]
Length = 453
Score = 357 bits (916), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 201/469 (42%), Positives = 281/469 (59%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG + + V T LKPR+A Y F + +D+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGPQAAFVAKQV---TGMDLKPRYAKYLPFKDADGAELDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF PHS+TGEDV+EL GHGGP+++ ML+ L I GLR A PGEF++RAFLN+K
Sbjct: 63 ALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILAI---PGLRPARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AAKSA+ SL G+FSK IN L++ LI+LR +E + DFPEE
Sbjct: 120 LDLTQAEAIADLIDASSEQAAKSALQSLQGQFSKRINTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + Q+ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LADGKVSADLQAIIDNLAAVRQEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
D AIVT IAGTTRD + + I I+ I DTAG+ D + +EVEKIGIER W E
Sbjct: 239 DSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVEKIGIERAWEE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQKNINYKNN 363
+K +D ++++ D + TD K I +F P + + + NK+D +G + + +
Sbjct: 292 IKQADRVLFMVDGTTTEATD-PKDIWPDFVDRLPDQMGMTVIRNKVDQTGETLGVCHASQ 350
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA G+ LR L + + T E ++AR RH+ +L A +L+ I
Sbjct: 351 PTLIRLSAKTGQGVEALRTHLKECMGFTGNQEGG-FMARRRHLDALERAAEHLA-----I 404
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 405 GQQQLEGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|373466595|ref|ZP_09557909.1| tRNA modification GTPase TrmE [Haemophilus sp. oral taxon 851 str.
F0397]
gi|371760377|gb|EHO49066.1| tRNA modification GTPase TrmE [Haemophilus sp. oral taxon 851 str.
F0397]
Length = 461
Score = 357 bits (916), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 198/468 (42%), Positives = 283/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + + V K K PR A Y F + ++D+G+
Sbjct: 14 IVAQATAPGRGGIGILRVSGPLATDVAQAVLGKCPK---PRMADYLPFKDADGTVLDQGI 70
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK+P+S+TGEDV+EL GHGG ++L +LL L+I G+RLA PGEF+++AFLN+K
Sbjct: 71 ALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQID---GIRLARPGEFSEQAFLNDK 127
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AA+SA+ SL G+FSK +N L+D +I LRT +E S DFP+E
Sbjct: 128 LDLAQAEAIADLIDATSEQAARSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE 187
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + N L I +L + + K+ +++R G+ VV+ G+PN GKSSL N L G
Sbjct: 188 IDFLADGKIEAN-LRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNVLAGR 246
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D +EVE+IGI R W E
Sbjct: 247 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT-------DEVERIGISRAWTE 299
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D II + D+ + D K + + P +PV V NKID +G Q + + ++
Sbjct: 300 IEQADRIILMLDSSDPESADLSKVRSEFLAKLPTTLPVTIVRNKIDLNGEQASESEQDCY 359
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G+ LLR L + QT +LAR RH+ +L +A +L + +
Sbjct: 360 QIISLSAQTHDGVQLLREHLKQAM-GFQTGMEGGFLARRRHLDALEKAAEHLQIGLVQLT 418
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 419 EFHAG-----ELLAEELRLVQTYLSEITGEFTSDDLLGNIFSSFCIGK 461
>gi|301324999|ref|ZP_07218552.1| tRNA modification GTPase TrmE, partial [Escherichia coli MS 78-1]
gi|300848114|gb|EFK75874.1| tRNA modification GTPase TrmE [Escherichia coli MS 78-1]
Length = 479
Score = 357 bits (916), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 194/475 (40%), Positives = 285/475 (60%), Gaps = 23/475 (4%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
+++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F +
Sbjct: 25 IMSDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKLPK---PRYADYLPFKDADG 81
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++
Sbjct: 82 SVLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSE 138
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 139 RAFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAA 198
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 199 IDFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSL 257
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IG
Sbjct: 258 LNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIG 310
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
IER W E++ +D ++++ D D + + I P +P+ V NK D +G
Sbjct: 311 IERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG 370
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
++ N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 371 MSEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQ 429
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 430 QGKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 479
>gi|423117070|ref|ZP_17104761.1| tRNA modification GTPase mnmE [Klebsiella oxytoca 10-5245]
gi|376376939|gb|EHS89714.1| tRNA modification GTPase mnmE [Klebsiella oxytoca 10-5245]
Length = 454
Score = 357 bits (916), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 285/474 (60%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F + +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKARDVAQAVLGKLPK---PRYADYLPFKDSDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSTRVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNAVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D N +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAN-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHT---DFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D T D I P N+P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTGATDPADIWPDFIARLPKNLPITVVRNKADITGETLGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N+ + + LSA G+++LRN L + +E +LAR RH+ +L++A +L
Sbjct: 347 SEVNDHSLVRLSARTGEGVDVLRNHLKQSMGFETNMEGG-FLARRRHLQALSDAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|417185433|ref|ZP_12010834.1| tRNA modification GTPase TrmE [Escherichia coli 93.0624]
gi|386182733|gb|EIH65489.1| tRNA modification GTPase TrmE [Escherichia coli 93.0624]
Length = 454
Score = 357 bits (916), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 285/474 (60%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +
Sbjct: 1 MSDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 VLDQGITLWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + +L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVIAELDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + + I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|423105586|ref|ZP_17093288.1| tRNA modification GTPase mnmE [Klebsiella oxytoca 10-5242]
gi|376380464|gb|EHS93210.1| tRNA modification GTPase mnmE [Klebsiella oxytoca 10-5242]
Length = 454
Score = 357 bits (916), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 285/474 (60%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F + +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKARDVAQAVLGKLPK---PRYADYLPFKDSDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSTRVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D N +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAN-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D TD I P N+P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDATDPADIWPDFIARLPKNLPITVVRNKADLTGETLGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N+ + + LSA G+++LRN L + +E +LAR RH+ +L++A +L
Sbjct: 347 SEVNDHSLVRLSARTGEGVDVLRNHLKQSMGFETNMEGG-FLARRRHLQALSDAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|319775065|ref|YP_004137553.1| tRNA modification GTPase mnmE [Haemophilus influenzae F3047]
gi|317449656|emb|CBY85862.1| tRNA modification GTPase mnmE [Haemophilus influenzae F3047]
Length = 452
Score = 357 bits (916), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 196/468 (41%), Positives = 283/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + + + K K PR A Y F + I+D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPLATKVAQAILGKCPK---PRMADYLPFKDADGTILDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK+P+S+TGEDV+EL GHGG ++L +LL L+I G+RLA PGEF+++AFLN+K
Sbjct: 62 ALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQID---GIRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E A +SA+ SL G+FSK +N L+D +I LRT +E S DFP+E
Sbjct: 119 LDLAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE 178
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + N L I +L + + K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 179 IDFLADGKIEAN-LRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGH 237
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG ++ +EVE+IGI R W E
Sbjct: 238 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LRNATDEVERIGISRAWTE 290
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D II + D+ + D K + + P +PV V NKID +G Q + + +
Sbjct: 291 IEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGY 350
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G+ LLR L + QT +LAR RH+ +L++A +L + +
Sbjct: 351 QMISLSAQTHDGVQLLREHLKQAM-GFQTGMEGGFLARRRHLDALDKAAEHLQIGLVQLT 409
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 410 EFHAG-----ELLAEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452
>gi|261341633|ref|ZP_05969491.1| hypothetical protein ENTCAN_08099 [Enterobacter cancerogenus ATCC
35316]
gi|288315988|gb|EFC54926.1| tRNA modification GTPase TrmE [Enterobacter cancerogenus ATCC
35316]
Length = 454
Score = 357 bits (916), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 197/475 (41%), Positives = 284/475 (59%), Gaps = 25/475 (5%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKAREVAEAVLGKLPK---PRYADYLPFKDSDGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 58 PLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIAKPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L ++ K L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNEVMKDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D I P +P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARLPAKLPITVVRNKADVTGETLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNE-ANYYLS 417
+ N + I LSA G++ LRN L + ++E +LAR RH+ +L E AN+ +
Sbjct: 347 SDVNGHSLIRLSARTGEGVDDLRNHLKQSMGFDTSMEGG-FLARRRHLQALEEAANHLVQ 405
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++I EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLIGAWAG------ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|422380742|ref|ZP_16460916.1| tRNA modification GTPase TrmE, partial [Escherichia coli MS 57-2]
gi|324008034|gb|EGB77253.1| tRNA modification GTPase TrmE [Escherichia coli MS 57-2]
Length = 481
Score = 357 bits (916), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 194/475 (40%), Positives = 285/475 (60%), Gaps = 23/475 (4%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
+++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F +
Sbjct: 27 IMSDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKLPK---PRYADYLPFKDADG 83
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++
Sbjct: 84 SVLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSE 140
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 141 RAFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAA 200
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 201 IDFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSL 259
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IG
Sbjct: 260 LNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIG 312
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
IER W E++ +D ++++ D D + + I P +P+ V NK D +G
Sbjct: 313 IERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG 372
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
++ N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 373 MSEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQ 431
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 432 QGKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 481
>gi|422783688|ref|ZP_16836471.1| tRNA modification GTPase TrmE [Escherichia coli TW10509]
gi|323975226|gb|EGB70330.1| tRNA modification GTPase TrmE [Escherichia coli TW10509]
Length = 454
Score = 357 bits (916), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 194/475 (40%), Positives = 286/475 (60%), Gaps = 25/475 (5%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +
Sbjct: 1 MSDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + + I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQQ 405
Query: 419 A-IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++++ EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKVQLLGAWAG------ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|422353578|ref|ZP_16434329.1| tRNA modification GTPase TrmE, partial [Escherichia coli MS 117-3]
gi|324018442|gb|EGB87661.1| tRNA modification GTPase TrmE [Escherichia coli MS 117-3]
Length = 479
Score = 357 bits (916), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 194/475 (40%), Positives = 285/475 (60%), Gaps = 23/475 (4%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
+++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F +
Sbjct: 25 IMSDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKLPK---PRYADYLPFKDADG 81
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++
Sbjct: 82 SVLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSE 138
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 139 RAFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAA 198
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 199 IDFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSL 257
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IG
Sbjct: 258 LNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIG 310
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
IER W E++ +D ++++ D D + + I P +P+ V NK D +G
Sbjct: 311 IERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG 370
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
++ N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 371 MSEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQ 429
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 430 QGKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 479
>gi|145637307|ref|ZP_01792968.1| tRNA modification GTPase [Haemophilus influenzae PittHH]
gi|145269559|gb|EDK09501.1| tRNA modification GTPase [Haemophilus influenzae PittHH]
Length = 452
Score = 357 bits (916), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 197/468 (42%), Positives = 283/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + + + K K PR A Y F + I+D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPLATKVAQAILGKCPK---PRMADYLPFKDADGTILDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK+P+S+TGEDV+EL GHGG ++L +LL L+I G+RLA PGEF+++AFLN+K
Sbjct: 62 ALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILKID---GIRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E A +SA+ SL G+FSK +N L+D +I LRT +E S DFP+E
Sbjct: 119 LDLAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE 178
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + N L I +L + + K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 179 IDFLADGKIEAN-LRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGR 237
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D +EVE+IGI R W E
Sbjct: 238 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT-------DEVERIGISRAWTE 290
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D II + D+ + D K + + P +PV V NKID +G Q + + +
Sbjct: 291 IEQADRIILMLDSSDPESVDLSKVRSEFLAKLPSTLPVTMVRNKIDLNGEQASESEQGGY 350
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G+ LLR L + QT +LAR RH+ +L++A +L + +
Sbjct: 351 QIISLSAQTHDGVKLLREHLKQAM-GFQTGMEGGFLARRRHLDALDKAAEHLQIGLVQLT 409
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 410 EFHAG-----ELLAEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452
>gi|146309632|ref|YP_001190097.1| tRNA modification GTPase TrmE [Pseudomonas mendocina ymp]
gi|166234810|sp|A4Y199.1|MNME_PSEMY RecName: Full=tRNA modification GTPase MnmE
gi|145577833|gb|ABP87365.1| tRNA modification GTPase trmE [Pseudomonas mendocina ymp]
Length = 455
Score = 357 bits (916), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 189/469 (40%), Positives = 281/469 (59%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I +AT GRGGVGI+R+SG + + +C++ +LKPRFA + F+ + +D+GL
Sbjct: 8 IAAVATAQGRGGVGIVRVSGPLSGQLAQAICRR---ELKPRFAHHGPFYGEQELPLDEGL 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
IYF P+S+TGEDV+EL GHGGP++L +LL CLE+G RLA PGEF++RAFLN+K
Sbjct: 65 AIYFPGPNSFTGEDVLELQGHGGPVVLDLLLRRCLELGA----RLARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+E AA++A+ SL G+FSK ++ L + LI LR +E + DFPEE
Sbjct: 121 LDLAQAEAIADLIEASSEQAARNALRSLQGEFSKRVHALTESLIQLRIYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + + ++L ++ L ++++ + AL+R+G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDFLADGH-VLSQLDGVRADLSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ + DTAG+ D + ++VE+IG+ER
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTD-------DQVERIGVERALKA 292
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYK-NN 363
+ +D ++ V D+ + D + ++ P V + NK D SG + +
Sbjct: 293 IGEADRVLLVVDSTAPEAADPFALWPEFLEQRPDPARVTLIRNKADLSGEAVTLQTSADG 352
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
+ LSA G+ LLR L + QT ES + AR RH+ +L++A YL
Sbjct: 353 HVTLSLSAKSADGLELLREHLKACMGYQQTAESG-FSARRRHLEALHQAEQYLEH----- 406
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 407 GRNQLTLMGAGELLAEDLRMAQQALGEITGAFSSDDLLGRIFSSFCIGK 455
>gi|325983265|ref|YP_004295667.1| tRNA modification GTPase TrmE [Nitrosomonas sp. AL212]
gi|325532784|gb|ADZ27505.1| tRNA modification GTPase TrmE [Nitrosomonas sp. AL212]
Length = 464
Score = 357 bits (916), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 204/474 (43%), Positives = 283/474 (59%), Gaps = 38/474 (8%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IATPPGRGG+G+IR+SG NL + +++ K K PR A+ F IID+G+
Sbjct: 20 IAAIATPPGRGGIGVIRISGNNLAKLAQVILGKLPK---PRHASLGKFLDTEGQIIDQGI 76
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
V+YF PHSYTGEDV+ELHGHGGP ++++LL SCL S G RLA PGEFT RA+LNNK
Sbjct: 77 VLYFPGPHSYTGEDVLELHGHGGPAVINLLLKSCL----SAGARLAQPGEFTLRAYLNNK 132
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DLIQ E++ LI AST+ AA+ A+ SL G FS I++L+ LI LR LIE + DFPE+
Sbjct: 133 IDLIQAESVAALIEASTQEAARCAVNSLQGHFSARIDVLVGLLITLRMLIEATLDFPEDE 192
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQ-------GKKRALIRNGLNVVLIGQPNVGKSSL 240
+ + + ++I++KL I+ Q ++ L++ G+ +VL G PNVGKSSL
Sbjct: 193 IDNL--------KTLQIREKLDHIVAQLEQTLSGARQGNLLQEGIRIVLAGAPNVGKSSL 244
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N LV D AIVT I GTTRD I +TI + I DTAG +++ + VE+ G
Sbjct: 245 LNQLVEEDAAIVTEIPGTTRDTIHRTITLGGMPIHIIDTAG-------LRETGDIVEQKG 297
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQKNIN 359
IERT +K +++++ + D+ +H IK + P + P I V+NKID +
Sbjct: 298 IERTLAAIKCANLVLRLLDS--SQHQPAAPDPIKQYIPDDKPQITVFNKIDLRNESPKME 355
Query: 360 YKNNIANIYLSASKRIGINLLRNTLLDLIE-KTQTIESSPYLARERHIHSLNEANYYLSC 418
+ + I+LSA GI LLR +L L + ++AR+RH+ +L +A+ +L
Sbjct: 356 ADEHNSIIHLSAKTGAGIELLRQKILHLAGWQFNHAGEGIFMARQRHLEALTQASAHLQN 415
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
A Q E LELIAE+LR LS+I G+ T +DLL IFS FCIGK
Sbjct: 416 A-----QEYAENEYQLELIAEELRLAQTALSAITGQFTADDLLGEIFSHFCIGK 464
>gi|419393961|ref|ZP_13934757.1| tRNA modification GTPase TrmE [Escherichia coli DEC15A]
gi|419399111|ref|ZP_13939871.1| tRNA modification GTPase TrmE [Escherichia coli DEC15B]
gi|419404356|ref|ZP_13945073.1| tRNA modification GTPase TrmE [Escherichia coli DEC15C]
gi|419409520|ref|ZP_13950202.1| tRNA modification GTPase TrmE [Escherichia coli DEC15D]
gi|419415077|ref|ZP_13955709.1| tRNA modification GTPase TrmE [Escherichia coli DEC15E]
gi|378233618|gb|EHX93704.1| tRNA modification GTPase TrmE [Escherichia coli DEC15A]
gi|378240192|gb|EHY00167.1| tRNA modification GTPase TrmE [Escherichia coli DEC15B]
gi|378243173|gb|EHY03120.1| tRNA modification GTPase TrmE [Escherichia coli DEC15C]
gi|378251489|gb|EHY11387.1| tRNA modification GTPase TrmE [Escherichia coli DEC15D]
gi|378256110|gb|EHY15963.1| tRNA modification GTPase TrmE [Escherichia coli DEC15E]
Length = 454
Score = 357 bits (916), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 284/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +
Sbjct: 1 MSDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + + I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHALIRLSARTGEGVDVLRNHLKQSMGFNTNMEGG-FLARRRHLQALEQAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|238787834|ref|ZP_04631631.1| tRNA modification GTPase mnmE [Yersinia frederiksenii ATCC 33641]
gi|238724177|gb|EEQ15820.1| tRNA modification GTPase mnmE [Yersinia frederiksenii ATCC 33641]
Length = 454
Score = 357 bits (916), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 286/474 (60%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ I+ ATPPGRGGVGI+R+SG+ ++ + V K K PR+A Y F + +
Sbjct: 1 MSTTDTIVAQATPPGRGGVGILRVSGRAAATVAQAVLGKLPK---PRYADYLPFKDVDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
I+D+G+ +YF P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 58 ILDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILAL---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS I+ L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSVRIHQLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L ++ + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D T+ + + P ++P+ V NK D +G +
Sbjct: 287 ERAWHEIEQADRVLFMVDGTTTDATEPSAIWPEFMARLPSSLPITVVRNKADITGETLGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N + I LSA GI+LLRN L + T E +LAR RH+ +L A +L
Sbjct: 347 TEVNGHSLIRLSARTGEGIDLLRNHLKQSMGFTSNTEGG-FLARRRHLQALETAAQHLVQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + + EL+AE+LR + LS I G+ +++DLL IFS FCIGK
Sbjct: 406 GHEQLVSAHAG-----ELLAEELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454
>gi|15833895|ref|NP_312668.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. Sakai]
gi|168748574|ref|ZP_02773596.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4113]
gi|168753599|ref|ZP_02778606.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4401]
gi|168759896|ref|ZP_02784903.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4501]
gi|168766197|ref|ZP_02791204.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4486]
gi|168772255|ref|ZP_02797262.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4196]
gi|168779932|ref|ZP_02804939.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4076]
gi|168786540|ref|ZP_02811547.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC869]
gi|168798745|ref|ZP_02823752.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC508]
gi|195936329|ref|ZP_03081711.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4024]
gi|208808040|ref|ZP_03250377.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4206]
gi|208814185|ref|ZP_03255514.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4045]
gi|208820072|ref|ZP_03260392.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4042]
gi|209395938|ref|YP_002273234.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4115]
gi|217324903|ref|ZP_03440987.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
TW14588]
gi|254795709|ref|YP_003080546.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
TW14359]
gi|261225860|ref|ZP_05940141.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Escherichia
coli O157:H7 str. FRIK2000]
gi|261258905|ref|ZP_05951438.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Escherichia
coli O157:H7 str. FRIK966]
gi|291285125|ref|YP_003501943.1| tRNA modification GTPase trmE [Escherichia coli O55:H7 str. CB9615]
gi|387509166|ref|YP_006161422.1| tRNA modification GTPase TrmE [Escherichia coli O55:H7 str.
RM12579]
gi|387884937|ref|YP_006315239.1| tRNA modification GTPase TrmE [Escherichia coli Xuzhou21]
gi|416315584|ref|ZP_11659397.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
O157:H7 str. 1044]
gi|416319838|ref|ZP_11662390.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
O157:H7 str. EC1212]
gi|416328599|ref|ZP_11668268.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
O157:H7 str. 1125]
gi|416778596|ref|ZP_11875993.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. G5101]
gi|416789859|ref|ZP_11880836.1| tRNA modification GTPase TrmE [Escherichia coli O157:H- str.
493-89]
gi|416801743|ref|ZP_11885775.1| tRNA modification GTPase TrmE [Escherichia coli O157:H- str. H
2687]
gi|416812596|ref|ZP_11890695.1| tRNA modification GTPase TrmE [Escherichia coli O55:H7 str.
3256-97]
gi|416823020|ref|ZP_11895317.1| tRNA modification GTPase TrmE [Escherichia coli O55:H7 str. USDA
5905]
gi|416833369|ref|ZP_11900307.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
LSU-61]
gi|419047885|ref|ZP_13594814.1| tRNA modification GTPase TrmE [Escherichia coli DEC3A]
gi|419053582|ref|ZP_13600448.1| tRNA modification GTPase TrmE [Escherichia coli DEC3B]
gi|419059541|ref|ZP_13606341.1| tRNA modification GTPase TrmE [Escherichia coli DEC3C]
gi|419065091|ref|ZP_13611801.1| tRNA modification GTPase TrmE [Escherichia coli DEC3D]
gi|419072046|ref|ZP_13617646.1| tRNA modification GTPase TrmE [Escherichia coli DEC3E]
gi|419077881|ref|ZP_13623379.1| tRNA modification GTPase TrmE [Escherichia coli DEC3F]
gi|419083025|ref|ZP_13628467.1| tRNA modification GTPase TrmE [Escherichia coli DEC4A]
gi|419088894|ref|ZP_13634245.1| tRNA modification GTPase TrmE [Escherichia coli DEC4B]
gi|419094832|ref|ZP_13640107.1| tRNA modification GTPase TrmE [Escherichia coli DEC4C]
gi|419100658|ref|ZP_13645844.1| tRNA modification GTPase TrmE [Escherichia coli DEC4D]
gi|419106425|ref|ZP_13651546.1| tRNA modification GTPase TrmE [Escherichia coli DEC4E]
gi|419111808|ref|ZP_13656859.1| tRNA modification GTPase TrmE [Escherichia coli DEC4F]
gi|419117272|ref|ZP_13662280.1| tRNA modification GTPase TrmE [Escherichia coli DEC5A]
gi|419123086|ref|ZP_13668025.1| tRNA modification GTPase TrmE [Escherichia coli DEC5B]
gi|419128389|ref|ZP_13673259.1| tRNA modification GTPase TrmE [Escherichia coli DEC5C]
gi|419133928|ref|ZP_13678752.1| tRNA modification GTPase TrmE [Escherichia coli DEC5D]
gi|419139071|ref|ZP_13683861.1| tRNA modification GTPase TrmE [Escherichia coli DEC5E]
gi|420272137|ref|ZP_14774485.1| tRNA modification GTPase TrmE [Escherichia coli PA22]
gi|420277839|ref|ZP_14780118.1| tRNA modification GTPase TrmE [Escherichia coli PA40]
gi|420283085|ref|ZP_14785317.1| tRNA modification GTPase TrmE [Escherichia coli TW06591]
gi|420289304|ref|ZP_14791485.1| tRNA modification GTPase TrmE [Escherichia coli TW10246]
gi|420294980|ref|ZP_14797087.1| tRNA modification GTPase TrmE [Escherichia coli TW11039]
gi|420300810|ref|ZP_14802853.1| tRNA modification GTPase TrmE [Escherichia coli TW09109]
gi|420306687|ref|ZP_14808673.1| tRNA modification GTPase TrmE [Escherichia coli TW10119]
gi|420312061|ref|ZP_14813987.1| tRNA modification GTPase TrmE [Escherichia coli EC1738]
gi|420317798|ref|ZP_14819667.1| tRNA modification GTPase TrmE [Escherichia coli EC1734]
gi|421820504|ref|ZP_16255988.1| tRNA modification GTPase TrmE [Escherichia coli 10.0821]
gi|421827312|ref|ZP_16262658.1| tRNA modification GTPase TrmE [Escherichia coli FRIK920]
gi|421833339|ref|ZP_16268617.1| tRNA modification GTPase TrmE [Escherichia coli PA7]
gi|423727871|ref|ZP_17701692.1| tRNA modification GTPase TrmE [Escherichia coli PA31]
gi|424080029|ref|ZP_17816976.1| tRNA modification GTPase TrmE [Escherichia coli FDA505]
gi|424086429|ref|ZP_17822905.1| tRNA modification GTPase TrmE [Escherichia coli FDA517]
gi|424092844|ref|ZP_17828756.1| tRNA modification GTPase TrmE [Escherichia coli FRIK1996]
gi|424099524|ref|ZP_17834772.1| tRNA modification GTPase TrmE [Escherichia coli FRIK1985]
gi|424105721|ref|ZP_17840443.1| tRNA modification GTPase TrmE [Escherichia coli FRIK1990]
gi|424112362|ref|ZP_17846578.1| tRNA modification GTPase TrmE [Escherichia coli 93-001]
gi|424118300|ref|ZP_17852123.1| tRNA modification GTPase TrmE [Escherichia coli PA3]
gi|424124496|ref|ZP_17857784.1| tRNA modification GTPase TrmE [Escherichia coli PA5]
gi|424130659|ref|ZP_17863551.1| tRNA modification GTPase TrmE [Escherichia coli PA9]
gi|424136973|ref|ZP_17869400.1| tRNA modification GTPase TrmE [Escherichia coli PA10]
gi|424143527|ref|ZP_17875371.1| tRNA modification GTPase TrmE [Escherichia coli PA14]
gi|424149909|ref|ZP_17881270.1| tRNA modification GTPase TrmE [Escherichia coli PA15]
gi|424163622|ref|ZP_17886683.1| tRNA modification GTPase TrmE [Escherichia coli PA24]
gi|424256729|ref|ZP_17892229.1| tRNA modification GTPase TrmE [Escherichia coli PA25]
gi|424335702|ref|ZP_17898163.1| tRNA modification GTPase TrmE [Escherichia coli PA28]
gi|424452219|ref|ZP_17903860.1| tRNA modification GTPase TrmE [Escherichia coli PA32]
gi|424458395|ref|ZP_17909484.1| tRNA modification GTPase TrmE [Escherichia coli PA33]
gi|424464927|ref|ZP_17915244.1| tRNA modification GTPase TrmE [Escherichia coli PA39]
gi|424471155|ref|ZP_17920946.1| tRNA modification GTPase TrmE [Escherichia coli PA41]
gi|424477660|ref|ZP_17926961.1| tRNA modification GTPase TrmE [Escherichia coli PA42]
gi|424483440|ref|ZP_17932407.1| tRNA modification GTPase TrmE [Escherichia coli TW07945]
gi|424489629|ref|ZP_17938157.1| tRNA modification GTPase TrmE [Escherichia coli TW09098]
gi|424496325|ref|ZP_17943855.1| tRNA modification GTPase TrmE [Escherichia coli TW09195]
gi|424502948|ref|ZP_17949822.1| tRNA modification GTPase TrmE [Escherichia coli EC4203]
gi|424509219|ref|ZP_17955578.1| tRNA modification GTPase TrmE [Escherichia coli EC4196]
gi|424516617|ref|ZP_17961197.1| tRNA modification GTPase TrmE [Escherichia coli TW14313]
gi|424522754|ref|ZP_17966849.1| tRNA modification GTPase TrmE [Escherichia coli TW14301]
gi|424528628|ref|ZP_17972328.1| tRNA modification GTPase TrmE [Escherichia coli EC4421]
gi|424534774|ref|ZP_17978108.1| tRNA modification GTPase TrmE [Escherichia coli EC4422]
gi|424540831|ref|ZP_17983760.1| tRNA modification GTPase TrmE [Escherichia coli EC4013]
gi|424547000|ref|ZP_17989327.1| tRNA modification GTPase TrmE [Escherichia coli EC4402]
gi|424553202|ref|ZP_17995019.1| tRNA modification GTPase TrmE [Escherichia coli EC4439]
gi|424559401|ref|ZP_18000786.1| tRNA modification GTPase TrmE [Escherichia coli EC4436]
gi|424565727|ref|ZP_18006717.1| tRNA modification GTPase TrmE [Escherichia coli EC4437]
gi|424571849|ref|ZP_18012375.1| tRNA modification GTPase TrmE [Escherichia coli EC4448]
gi|424578008|ref|ZP_18018033.1| tRNA modification GTPase TrmE [Escherichia coli EC1845]
gi|424583840|ref|ZP_18023472.1| tRNA modification GTPase TrmE [Escherichia coli EC1863]
gi|425100479|ref|ZP_18503200.1| tRNA modification GTPase TrmE [Escherichia coli 3.4870]
gi|425106586|ref|ZP_18508888.1| tRNA modification GTPase TrmE [Escherichia coli 5.2239]
gi|425112589|ref|ZP_18514496.1| tRNA modification GTPase TrmE [Escherichia coli 6.0172]
gi|425128517|ref|ZP_18529672.1| tRNA modification GTPase TrmE [Escherichia coli 8.0586]
gi|425134287|ref|ZP_18535124.1| tRNA modification GTPase TrmE [Escherichia coli 8.2524]
gi|425140882|ref|ZP_18541249.1| tRNA modification GTPase TrmE [Escherichia coli 10.0833]
gi|425146552|ref|ZP_18546530.1| tRNA modification GTPase TrmE [Escherichia coli 10.0869]
gi|425152668|ref|ZP_18552269.1| tRNA modification GTPase TrmE [Escherichia coli 88.0221]
gi|425158568|ref|ZP_18557817.1| tRNA modification GTPase TrmE [Escherichia coli PA34]
gi|425164885|ref|ZP_18563759.1| tRNA modification GTPase TrmE [Escherichia coli FDA506]
gi|425170634|ref|ZP_18569094.1| tRNA modification GTPase TrmE [Escherichia coli FDA507]
gi|425176679|ref|ZP_18574785.1| tRNA modification GTPase TrmE [Escherichia coli FDA504]
gi|425182741|ref|ZP_18580423.1| tRNA modification GTPase TrmE [Escherichia coli FRIK1999]
gi|425195769|ref|ZP_18592525.1| tRNA modification GTPase TrmE [Escherichia coli NE1487]
gi|425202241|ref|ZP_18598437.1| tRNA modification GTPase TrmE [Escherichia coli NE037]
gi|425208622|ref|ZP_18604406.1| tRNA modification GTPase TrmE [Escherichia coli FRIK2001]
gi|425214379|ref|ZP_18609768.1| tRNA modification GTPase TrmE [Escherichia coli PA4]
gi|425220507|ref|ZP_18615456.1| tRNA modification GTPase TrmE [Escherichia coli PA23]
gi|425227149|ref|ZP_18621603.1| tRNA modification GTPase TrmE [Escherichia coli PA49]
gi|425233309|ref|ZP_18627335.1| tRNA modification GTPase TrmE [Escherichia coli PA45]
gi|425239231|ref|ZP_18632938.1| tRNA modification GTPase TrmE [Escherichia coli TT12B]
gi|425245465|ref|ZP_18638759.1| tRNA modification GTPase TrmE [Escherichia coli MA6]
gi|425251658|ref|ZP_18644588.1| tRNA modification GTPase TrmE [Escherichia coli 5905]
gi|425257450|ref|ZP_18649938.1| tRNA modification GTPase TrmE [Escherichia coli CB7326]
gi|425263715|ref|ZP_18655694.1| tRNA modification GTPase TrmE [Escherichia coli EC96038]
gi|425269704|ref|ZP_18661318.1| tRNA modification GTPase TrmE [Escherichia coli 5412]
gi|425297173|ref|ZP_18687296.1| tRNA modification GTPase TrmE [Escherichia coli PA38]
gi|425313870|ref|ZP_18703028.1| tRNA modification GTPase TrmE [Escherichia coli EC1735]
gi|425319852|ref|ZP_18708620.1| tRNA modification GTPase TrmE [Escherichia coli EC1736]
gi|425325979|ref|ZP_18714302.1| tRNA modification GTPase TrmE [Escherichia coli EC1737]
gi|425332297|ref|ZP_18720107.1| tRNA modification GTPase TrmE [Escherichia coli EC1846]
gi|425338478|ref|ZP_18725809.1| tRNA modification GTPase TrmE [Escherichia coli EC1847]
gi|425344780|ref|ZP_18731656.1| tRNA modification GTPase TrmE [Escherichia coli EC1848]
gi|425350618|ref|ZP_18737066.1| tRNA modification GTPase TrmE [Escherichia coli EC1849]
gi|425356891|ref|ZP_18742940.1| tRNA modification GTPase TrmE [Escherichia coli EC1850]
gi|425362845|ref|ZP_18748478.1| tRNA modification GTPase TrmE [Escherichia coli EC1856]
gi|425369102|ref|ZP_18754175.1| tRNA modification GTPase TrmE [Escherichia coli EC1862]
gi|425375410|ref|ZP_18760035.1| tRNA modification GTPase TrmE [Escherichia coli EC1864]
gi|425388297|ref|ZP_18771841.1| tRNA modification GTPase TrmE [Escherichia coli EC1866]
gi|425394991|ref|ZP_18778085.1| tRNA modification GTPase TrmE [Escherichia coli EC1868]
gi|425401082|ref|ZP_18783773.1| tRNA modification GTPase TrmE [Escherichia coli EC1869]
gi|425407178|ref|ZP_18789384.1| tRNA modification GTPase TrmE [Escherichia coli EC1870]
gi|425413537|ref|ZP_18795284.1| tRNA modification GTPase TrmE [Escherichia coli NE098]
gi|425419850|ref|ZP_18801107.1| tRNA modification GTPase TrmE [Escherichia coli FRIK523]
gi|425431150|ref|ZP_18811744.1| tRNA modification GTPase TrmE [Escherichia coli 0.1304]
gi|428949556|ref|ZP_19021814.1| tRNA modification GTPase TrmE [Escherichia coli 88.1467]
gi|428955628|ref|ZP_19027405.1| tRNA modification GTPase TrmE [Escherichia coli 88.1042]
gi|428961647|ref|ZP_19032913.1| tRNA modification GTPase TrmE [Escherichia coli 89.0511]
gi|428968249|ref|ZP_19038941.1| tRNA modification GTPase TrmE [Escherichia coli 90.0091]
gi|428974005|ref|ZP_19044302.1| tRNA modification GTPase TrmE [Escherichia coli 90.0039]
gi|428980390|ref|ZP_19050187.1| tRNA modification GTPase TrmE [Escherichia coli 90.2281]
gi|428986214|ref|ZP_19055589.1| tRNA modification GTPase TrmE [Escherichia coli 93.0055]
gi|428992342|ref|ZP_19061316.1| tRNA modification GTPase TrmE [Escherichia coli 93.0056]
gi|428998237|ref|ZP_19066816.1| tRNA modification GTPase TrmE [Escherichia coli 94.0618]
gi|429004619|ref|ZP_19072669.1| tRNA modification GTPase TrmE [Escherichia coli 95.0183]
gi|429010633|ref|ZP_19078031.1| tRNA modification GTPase TrmE [Escherichia coli 95.1288]
gi|429017128|ref|ZP_19083991.1| tRNA modification GTPase TrmE [Escherichia coli 95.0943]
gi|429022904|ref|ZP_19089407.1| tRNA modification GTPase TrmE [Escherichia coli 96.0428]
gi|429029038|ref|ZP_19095005.1| tRNA modification GTPase TrmE [Escherichia coli 96.0427]
gi|429035194|ref|ZP_19100703.1| tRNA modification GTPase TrmE [Escherichia coli 96.0939]
gi|429041294|ref|ZP_19106371.1| tRNA modification GTPase TrmE [Escherichia coli 96.0932]
gi|429047164|ref|ZP_19111862.1| tRNA modification GTPase TrmE [Escherichia coli 96.0107]
gi|429052481|ref|ZP_19117039.1| tRNA modification GTPase TrmE [Escherichia coli 97.0003]
gi|429058033|ref|ZP_19122284.1| tRNA modification GTPase TrmE [Escherichia coli 97.1742]
gi|429063545|ref|ZP_19127513.1| tRNA modification GTPase TrmE [Escherichia coli 97.0007]
gi|429069748|ref|ZP_19133178.1| tRNA modification GTPase TrmE [Escherichia coli 99.0672]
gi|429075538|ref|ZP_19138782.1| tRNA modification GTPase TrmE [Escherichia coli 99.0678]
gi|429080735|ref|ZP_19143862.1| tRNA modification GTPase TrmE [Escherichia coli 99.0713]
gi|429828955|ref|ZP_19359941.1| tRNA modification GTPase TrmE [Escherichia coli 96.0109]
gi|429835407|ref|ZP_19365654.1| tRNA modification GTPase TrmE [Escherichia coli 97.0010]
gi|444927447|ref|ZP_21246704.1| tRNA modification GTPase TrmE [Escherichia coli 09BKT078844]
gi|444933055|ref|ZP_21252059.1| tRNA modification GTPase TrmE [Escherichia coli 99.0814]
gi|444938527|ref|ZP_21257255.1| tRNA modification GTPase TrmE [Escherichia coli 99.0815]
gi|444944126|ref|ZP_21262606.1| tRNA modification GTPase TrmE [Escherichia coli 99.0816]
gi|444949546|ref|ZP_21267834.1| tRNA modification GTPase TrmE [Escherichia coli 99.0839]
gi|444955260|ref|ZP_21273321.1| tRNA modification GTPase TrmE [Escherichia coli 99.0848]
gi|444960637|ref|ZP_21278453.1| tRNA modification GTPase TrmE [Escherichia coli 99.1753]
gi|444965856|ref|ZP_21283414.1| tRNA modification GTPase TrmE [Escherichia coli 99.1775]
gi|444971883|ref|ZP_21289218.1| tRNA modification GTPase TrmE [Escherichia coli 99.1793]
gi|444977184|ref|ZP_21294256.1| tRNA modification GTPase TrmE [Escherichia coli 99.1805]
gi|444982527|ref|ZP_21299424.1| tRNA modification GTPase TrmE [Escherichia coli ATCC 700728]
gi|444987936|ref|ZP_21304704.1| tRNA modification GTPase TrmE [Escherichia coli PA11]
gi|444993247|ref|ZP_21309879.1| tRNA modification GTPase TrmE [Escherichia coli PA19]
gi|444998491|ref|ZP_21314981.1| tRNA modification GTPase TrmE [Escherichia coli PA13]
gi|445004039|ref|ZP_21320419.1| tRNA modification GTPase TrmE [Escherichia coli PA2]
gi|445009403|ref|ZP_21325629.1| tRNA modification GTPase TrmE [Escherichia coli PA47]
gi|445014533|ref|ZP_21330629.1| tRNA modification GTPase TrmE [Escherichia coli PA48]
gi|445020456|ref|ZP_21336412.1| tRNA modification GTPase TrmE [Escherichia coli PA8]
gi|445025816|ref|ZP_21341630.1| tRNA modification GTPase TrmE [Escherichia coli 7.1982]
gi|445031272|ref|ZP_21346929.1| tRNA modification GTPase TrmE [Escherichia coli 99.1781]
gi|445036695|ref|ZP_21352213.1| tRNA modification GTPase TrmE [Escherichia coli 99.1762]
gi|445042369|ref|ZP_21357732.1| tRNA modification GTPase TrmE [Escherichia coli PA35]
gi|445047582|ref|ZP_21362820.1| tRNA modification GTPase TrmE [Escherichia coli 3.4880]
gi|445053144|ref|ZP_21368155.1| tRNA modification GTPase TrmE [Escherichia coli 95.0083]
gi|445061186|ref|ZP_21373694.1| tRNA modification GTPase TrmE [Escherichia coli 99.0670]
gi|452967329|ref|ZP_21965556.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4009]
gi|21363001|sp|Q8XB41.1|MNME_ECO57 RecName: Full=tRNA modification GTPase MnmE
gi|254811478|sp|B5YXB0.1|MNME_ECO5E RecName: Full=tRNA modification GTPase MnmE
gi|13364116|dbj|BAB38064.1| GTP-binding protein in thiophene and furan oxidation [Escherichia
coli O157:H7 str. Sakai]
gi|187771576|gb|EDU35420.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4196]
gi|188016998|gb|EDU55120.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4113]
gi|189002302|gb|EDU71288.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4076]
gi|189359120|gb|EDU77539.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4401]
gi|189364418|gb|EDU82837.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4486]
gi|189369584|gb|EDU88000.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4501]
gi|189373460|gb|EDU91876.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC869]
gi|189378836|gb|EDU97252.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC508]
gi|208727841|gb|EDZ77442.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4206]
gi|208735462|gb|EDZ84149.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4045]
gi|208740195|gb|EDZ87877.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4042]
gi|209157338|gb|ACI34771.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4115]
gi|209754068|gb|ACI75341.1| hypothetical protein ECs4641 [Escherichia coli]
gi|209754070|gb|ACI75342.1| hypothetical protein ECs4641 [Escherichia coli]
gi|209754072|gb|ACI75343.1| hypothetical protein ECs4641 [Escherichia coli]
gi|209754074|gb|ACI75344.1| hypothetical protein ECs4641 [Escherichia coli]
gi|209754076|gb|ACI75345.1| hypothetical protein ECs4641 [Escherichia coli]
gi|217321124|gb|EEC29548.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
TW14588]
gi|254595109|gb|ACT74470.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Escherichia
coli O157:H7 str. TW14359]
gi|290764998|gb|ADD58959.1| tRNA modification GTPase trmE [Escherichia coli O55:H7 str. CB9615]
gi|320191194|gb|EFW65844.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
O157:H7 str. EC1212]
gi|320639432|gb|EFX09047.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. G5101]
gi|320644875|gb|EFX13911.1| tRNA modification GTPase TrmE [Escherichia coli O157:H- str.
493-89]
gi|320650139|gb|EFX18635.1| tRNA modification GTPase TrmE [Escherichia coli O157:H- str. H
2687]
gi|320655487|gb|EFX23422.1| tRNA modification GTPase TrmE [Escherichia coli O55:H7 str. 3256-97
TW 07815]
gi|320661113|gb|EFX28549.1| tRNA modification GTPase TrmE [Escherichia coli O55:H7 str. USDA
5905]
gi|320666239|gb|EFX33245.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
LSU-61]
gi|326337245|gb|EGD61080.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
O157:H7 str. 1044]
gi|326341616|gb|EGD65405.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
O157:H7 str. 1125]
gi|374361160|gb|AEZ42867.1| tRNA modification GTPase TrmE [Escherichia coli O55:H7 str.
RM12579]
gi|377889279|gb|EHU53745.1| tRNA modification GTPase TrmE [Escherichia coli DEC3A]
gi|377889972|gb|EHU54431.1| tRNA modification GTPase TrmE [Escherichia coli DEC3B]
gi|377902763|gb|EHU67066.1| tRNA modification GTPase TrmE [Escherichia coli DEC3C]
gi|377905676|gb|EHU69937.1| tRNA modification GTPase TrmE [Escherichia coli DEC3D]
gi|377907030|gb|EHU71267.1| tRNA modification GTPase TrmE [Escherichia coli DEC3E]
gi|377917478|gb|EHU81539.1| tRNA modification GTPase TrmE [Escherichia coli DEC3F]
gi|377923184|gb|EHU87152.1| tRNA modification GTPase TrmE [Escherichia coli DEC4A]
gi|377927956|gb|EHU91871.1| tRNA modification GTPase TrmE [Escherichia coli DEC4B]
gi|377937468|gb|EHV01245.1| tRNA modification GTPase TrmE [Escherichia coli DEC4D]
gi|377938097|gb|EHV01866.1| tRNA modification GTPase TrmE [Escherichia coli DEC4C]
gi|377944300|gb|EHV08005.1| tRNA modification GTPase TrmE [Escherichia coli DEC4E]
gi|377954831|gb|EHV18390.1| tRNA modification GTPase TrmE [Escherichia coli DEC4F]
gi|377957594|gb|EHV21125.1| tRNA modification GTPase TrmE [Escherichia coli DEC5A]
gi|377961834|gb|EHV25299.1| tRNA modification GTPase TrmE [Escherichia coli DEC5B]
gi|377970017|gb|EHV33389.1| tRNA modification GTPase TrmE [Escherichia coli DEC5C]
gi|377970632|gb|EHV33991.1| tRNA modification GTPase TrmE [Escherichia coli DEC5D]
gi|377981195|gb|EHV44455.1| tRNA modification GTPase TrmE [Escherichia coli DEC5E]
gi|386798395|gb|AFJ31429.1| tRNA modification GTPase TrmE [Escherichia coli Xuzhou21]
gi|390637763|gb|EIN17303.1| tRNA modification GTPase TrmE [Escherichia coli FRIK1996]
gi|390638267|gb|EIN17781.1| tRNA modification GTPase TrmE [Escherichia coli FDA505]
gi|390638943|gb|EIN18432.1| tRNA modification GTPase TrmE [Escherichia coli FDA517]
gi|390656339|gb|EIN34222.1| tRNA modification GTPase TrmE [Escherichia coli FRIK1985]
gi|390656900|gb|EIN34740.1| tRNA modification GTPase TrmE [Escherichia coli 93-001]
gi|390659868|gb|EIN37607.1| tRNA modification GTPase TrmE [Escherichia coli FRIK1990]
gi|390674431|gb|EIN50625.1| tRNA modification GTPase TrmE [Escherichia coli PA3]
gi|390677540|gb|EIN53566.1| tRNA modification GTPase TrmE [Escherichia coli PA5]
gi|390681080|gb|EIN56885.1| tRNA modification GTPase TrmE [Escherichia coli PA9]
gi|390692282|gb|EIN66976.1| tRNA modification GTPase TrmE [Escherichia coli PA10]
gi|390696440|gb|EIN70899.1| tRNA modification GTPase TrmE [Escherichia coli PA14]
gi|390697721|gb|EIN72128.1| tRNA modification GTPase TrmE [Escherichia coli PA15]
gi|390711400|gb|EIN84373.1| tRNA modification GTPase TrmE [Escherichia coli PA22]
gi|390718246|gb|EIN91003.1| tRNA modification GTPase TrmE [Escherichia coli PA24]
gi|390718652|gb|EIN91403.1| tRNA modification GTPase TrmE [Escherichia coli PA25]
gi|390724473|gb|EIN97023.1| tRNA modification GTPase TrmE [Escherichia coli PA28]
gi|390737647|gb|EIO08930.1| tRNA modification GTPase TrmE [Escherichia coli PA31]
gi|390737880|gb|EIO09129.1| tRNA modification GTPase TrmE [Escherichia coli PA32]
gi|390741560|gb|EIO12618.1| tRNA modification GTPase TrmE [Escherichia coli PA33]
gi|390756036|gb|EIO25557.1| tRNA modification GTPase TrmE [Escherichia coli PA40]
gi|390758992|gb|EIO28403.1| tRNA modification GTPase TrmE [Escherichia coli PA39]
gi|390763048|gb|EIO32298.1| tRNA modification GTPase TrmE [Escherichia coli PA41]
gi|390765120|gb|EIO34302.1| tRNA modification GTPase TrmE [Escherichia coli PA42]
gi|390779876|gb|EIO47590.1| tRNA modification GTPase TrmE [Escherichia coli TW06591]
gi|390786182|gb|EIO53705.1| tRNA modification GTPase TrmE [Escherichia coli TW07945]
gi|390787278|gb|EIO54770.1| tRNA modification GTPase TrmE [Escherichia coli TW10246]
gi|390793189|gb|EIO60533.1| tRNA modification GTPase TrmE [Escherichia coli TW11039]
gi|390800370|gb|EIO67462.1| tRNA modification GTPase TrmE [Escherichia coli TW09098]
gi|390805181|gb|EIO72129.1| tRNA modification GTPase TrmE [Escherichia coli TW09109]
gi|390813721|gb|EIO80323.1| tRNA modification GTPase TrmE [Escherichia coli TW10119]
gi|390822520|gb|EIO88635.1| tRNA modification GTPase TrmE [Escherichia coli TW09195]
gi|390822710|gb|EIO88807.1| tRNA modification GTPase TrmE [Escherichia coli EC4203]
gi|390827786|gb|EIO93518.1| tRNA modification GTPase TrmE [Escherichia coli EC4196]
gi|390841204|gb|EIP05173.1| tRNA modification GTPase TrmE [Escherichia coli TW14313]
gi|390843075|gb|EIP06894.1| tRNA modification GTPase TrmE [Escherichia coli TW14301]
gi|390847923|gb|EIP11428.1| tRNA modification GTPase TrmE [Escherichia coli EC4421]
gi|390858428|gb|EIP20820.1| tRNA modification GTPase TrmE [Escherichia coli EC4422]
gi|390862800|gb|EIP24971.1| tRNA modification GTPase TrmE [Escherichia coli EC4013]
gi|390866851|gb|EIP28762.1| tRNA modification GTPase TrmE [Escherichia coli EC4402]
gi|390875262|gb|EIP36325.1| tRNA modification GTPase TrmE [Escherichia coli EC4439]
gi|390880652|gb|EIP41321.1| tRNA modification GTPase TrmE [Escherichia coli EC4436]
gi|390890540|gb|EIP50206.1| tRNA modification GTPase TrmE [Escherichia coli EC4437]
gi|390891992|gb|EIP51600.1| tRNA modification GTPase TrmE [Escherichia coli EC4448]
gi|390898026|gb|EIP57318.1| tRNA modification GTPase TrmE [Escherichia coli EC1738]
gi|390906112|gb|EIP65026.1| tRNA modification GTPase TrmE [Escherichia coli EC1734]
gi|390916075|gb|EIP74563.1| tRNA modification GTPase TrmE [Escherichia coli EC1863]
gi|390916148|gb|EIP74631.1| tRNA modification GTPase TrmE [Escherichia coli EC1845]
gi|408061575|gb|EKG96088.1| tRNA modification GTPase TrmE [Escherichia coli PA7]
gi|408062061|gb|EKG96569.1| tRNA modification GTPase TrmE [Escherichia coli FRIK920]
gi|408065974|gb|EKH00441.1| tRNA modification GTPase TrmE [Escherichia coli PA34]
gi|408075939|gb|EKH10169.1| tRNA modification GTPase TrmE [Escherichia coli FDA506]
gi|408080415|gb|EKH14490.1| tRNA modification GTPase TrmE [Escherichia coli FDA507]
gi|408088552|gb|EKH21913.1| tRNA modification GTPase TrmE [Escherichia coli FDA504]
gi|408094728|gb|EKH27738.1| tRNA modification GTPase TrmE [Escherichia coli FRIK1999]
gi|408105942|gb|EKH38074.1| tRNA modification GTPase TrmE [Escherichia coli NE1487]
gi|408112653|gb|EKH44288.1| tRNA modification GTPase TrmE [Escherichia coli NE037]
gi|408118959|gb|EKH50064.1| tRNA modification GTPase TrmE [Escherichia coli FRIK2001]
gi|408125086|gb|EKH55715.1| tRNA modification GTPase TrmE [Escherichia coli PA4]
gi|408134920|gb|EKH64732.1| tRNA modification GTPase TrmE [Escherichia coli PA23]
gi|408137117|gb|EKH66832.1| tRNA modification GTPase TrmE [Escherichia coli PA49]
gi|408143910|gb|EKH73170.1| tRNA modification GTPase TrmE [Escherichia coli PA45]
gi|408152341|gb|EKH80781.1| tRNA modification GTPase TrmE [Escherichia coli TT12B]
gi|408157350|gb|EKH85504.1| tRNA modification GTPase TrmE [Escherichia coli MA6]
gi|408161444|gb|EKH89400.1| tRNA modification GTPase TrmE [Escherichia coli 5905]
gi|408170560|gb|EKH97740.1| tRNA modification GTPase TrmE [Escherichia coli CB7326]
gi|408177475|gb|EKI04269.1| tRNA modification GTPase TrmE [Escherichia coli EC96038]
gi|408180487|gb|EKI07097.1| tRNA modification GTPase TrmE [Escherichia coli 5412]
gi|408212611|gb|EKI37132.1| tRNA modification GTPase TrmE [Escherichia coli PA38]
gi|408223777|gb|EKI47527.1| tRNA modification GTPase TrmE [Escherichia coli EC1735]
gi|408235285|gb|EKI58251.1| tRNA modification GTPase TrmE [Escherichia coli EC1736]
gi|408238367|gb|EKI61174.1| tRNA modification GTPase TrmE [Escherichia coli EC1737]
gi|408243424|gb|EKI65946.1| tRNA modification GTPase TrmE [Escherichia coli EC1846]
gi|408252259|gb|EKI73937.1| tRNA modification GTPase TrmE [Escherichia coli EC1847]
gi|408256341|gb|EKI77724.1| tRNA modification GTPase TrmE [Escherichia coli EC1848]
gi|408262997|gb|EKI83892.1| tRNA modification GTPase TrmE [Escherichia coli EC1849]
gi|408271229|gb|EKI91366.1| tRNA modification GTPase TrmE [Escherichia coli EC1850]
gi|408274368|gb|EKI94382.1| tRNA modification GTPase TrmE [Escherichia coli EC1856]
gi|408282463|gb|EKJ01770.1| tRNA modification GTPase TrmE [Escherichia coli EC1862]
gi|408288702|gb|EKJ07517.1| tRNA modification GTPase TrmE [Escherichia coli EC1864]
gi|408303869|gb|EKJ21317.1| tRNA modification GTPase TrmE [Escherichia coli EC1868]
gi|408304726|gb|EKJ22148.1| tRNA modification GTPase TrmE [Escherichia coli EC1866]
gi|408316195|gb|EKJ32488.1| tRNA modification GTPase TrmE [Escherichia coli EC1869]
gi|408321458|gb|EKJ37489.1| tRNA modification GTPase TrmE [Escherichia coli EC1870]
gi|408323270|gb|EKJ39233.1| tRNA modification GTPase TrmE [Escherichia coli NE098]
gi|408334198|gb|EKJ49097.1| tRNA modification GTPase TrmE [Escherichia coli FRIK523]
gi|408342320|gb|EKJ56749.1| tRNA modification GTPase TrmE [Escherichia coli 0.1304]
gi|408545192|gb|EKK22631.1| tRNA modification GTPase TrmE [Escherichia coli 5.2239]
gi|408545825|gb|EKK23249.1| tRNA modification GTPase TrmE [Escherichia coli 3.4870]
gi|408546400|gb|EKK23815.1| tRNA modification GTPase TrmE [Escherichia coli 6.0172]
gi|408564068|gb|EKK40188.1| tRNA modification GTPase TrmE [Escherichia coli 8.0586]
gi|408575856|gb|EKK51499.1| tRNA modification GTPase TrmE [Escherichia coli 10.0833]
gi|408578829|gb|EKK54335.1| tRNA modification GTPase TrmE [Escherichia coli 8.2524]
gi|408588479|gb|EKK63052.1| tRNA modification GTPase TrmE [Escherichia coli 10.0869]
gi|408593494|gb|EKK67804.1| tRNA modification GTPase TrmE [Escherichia coli 88.0221]
gi|408609438|gb|EKK82819.1| tRNA modification GTPase TrmE [Escherichia coli 10.0821]
gi|427201528|gb|EKV71909.1| tRNA modification GTPase TrmE [Escherichia coli 88.1042]
gi|427201744|gb|EKV72113.1| tRNA modification GTPase TrmE [Escherichia coli 89.0511]
gi|427204923|gb|EKV75185.1| tRNA modification GTPase TrmE [Escherichia coli 88.1467]
gi|427218040|gb|EKV87084.1| tRNA modification GTPase TrmE [Escherichia coli 90.0091]
gi|427221423|gb|EKV90269.1| tRNA modification GTPase TrmE [Escherichia coli 90.2281]
gi|427224482|gb|EKV93190.1| tRNA modification GTPase TrmE [Escherichia coli 90.0039]
gi|427238473|gb|EKW05990.1| tRNA modification GTPase TrmE [Escherichia coli 93.0056]
gi|427238617|gb|EKW06132.1| tRNA modification GTPase TrmE [Escherichia coli 93.0055]
gi|427242965|gb|EKW10360.1| tRNA modification GTPase TrmE [Escherichia coli 94.0618]
gi|427256019|gb|EKW22245.1| tRNA modification GTPase TrmE [Escherichia coli 95.0183]
gi|427257650|gb|EKW23768.1| tRNA modification GTPase TrmE [Escherichia coli 95.0943]
gi|427259133|gb|EKW25206.1| tRNA modification GTPase TrmE [Escherichia coli 95.1288]
gi|427273265|gb|EKW37954.1| tRNA modification GTPase TrmE [Escherichia coli 96.0428]
gi|427275662|gb|EKW40273.1| tRNA modification GTPase TrmE [Escherichia coli 96.0427]
gi|427280695|gb|EKW45047.1| tRNA modification GTPase TrmE [Escherichia coli 96.0939]
gi|427289270|gb|EKW52846.1| tRNA modification GTPase TrmE [Escherichia coli 96.0932]
gi|427296000|gb|EKW59072.1| tRNA modification GTPase TrmE [Escherichia coli 96.0107]
gi|427298112|gb|EKW61134.1| tRNA modification GTPase TrmE [Escherichia coli 97.0003]
gi|427308327|gb|EKW70728.1| tRNA modification GTPase TrmE [Escherichia coli 97.1742]
gi|427311453|gb|EKW73657.1| tRNA modification GTPase TrmE [Escherichia coli 97.0007]
gi|427315931|gb|EKW77906.1| tRNA modification GTPase TrmE [Escherichia coli 99.0672]
gi|427325279|gb|EKW86725.1| tRNA modification GTPase TrmE [Escherichia coli 99.0678]
gi|427326588|gb|EKW87997.1| tRNA modification GTPase TrmE [Escherichia coli 99.0713]
gi|429251018|gb|EKY35651.1| tRNA modification GTPase TrmE [Escherichia coli 96.0109]
gi|429251653|gb|EKY36236.1| tRNA modification GTPase TrmE [Escherichia coli 97.0010]
gi|444535108|gb|ELV15241.1| tRNA modification GTPase TrmE [Escherichia coli 99.0814]
gi|444536677|gb|ELV16680.1| tRNA modification GTPase TrmE [Escherichia coli 09BKT078844]
gi|444545410|gb|ELV24310.1| tRNA modification GTPase TrmE [Escherichia coli 99.0815]
gi|444554731|gb|ELV32271.1| tRNA modification GTPase TrmE [Escherichia coli 99.0816]
gi|444554831|gb|ELV32353.1| tRNA modification GTPase TrmE [Escherichia coli 99.0839]
gi|444559649|gb|ELV36861.1| tRNA modification GTPase TrmE [Escherichia coli 99.0848]
gi|444569139|gb|ELV45765.1| tRNA modification GTPase TrmE [Escherichia coli 99.1753]
gi|444572748|gb|ELV49161.1| tRNA modification GTPase TrmE [Escherichia coli 99.1775]
gi|444576298|gb|ELV52491.1| tRNA modification GTPase TrmE [Escherichia coli 99.1793]
gi|444588435|gb|ELV63813.1| tRNA modification GTPase TrmE [Escherichia coli 99.1805]
gi|444589350|gb|ELV64686.1| tRNA modification GTPase TrmE [Escherichia coli ATCC 700728]
gi|444589722|gb|ELV65050.1| tRNA modification GTPase TrmE [Escherichia coli PA11]
gi|444603608|gb|ELV78309.1| tRNA modification GTPase TrmE [Escherichia coli PA13]
gi|444603793|gb|ELV78488.1| tRNA modification GTPase TrmE [Escherichia coli PA19]
gi|444612666|gb|ELV86951.1| tRNA modification GTPase TrmE [Escherichia coli PA2]
gi|444619729|gb|ELV93759.1| tRNA modification GTPase TrmE [Escherichia coli PA47]
gi|444620713|gb|ELV94710.1| tRNA modification GTPase TrmE [Escherichia coli PA48]
gi|444627181|gb|ELW00959.1| tRNA modification GTPase TrmE [Escherichia coli PA8]
gi|444635486|gb|ELW08913.1| tRNA modification GTPase TrmE [Escherichia coli 7.1982]
gi|444637659|gb|ELW11025.1| tRNA modification GTPase TrmE [Escherichia coli 99.1781]
gi|444642325|gb|ELW15521.1| tRNA modification GTPase TrmE [Escherichia coli 99.1762]
gi|444651910|gb|ELW24695.1| tRNA modification GTPase TrmE [Escherichia coli PA35]
gi|444657172|gb|ELW29665.1| tRNA modification GTPase TrmE [Escherichia coli 3.4880]
gi|444659962|gb|ELW32347.1| tRNA modification GTPase TrmE [Escherichia coli 95.0083]
gi|444667047|gb|ELW39096.1| tRNA modification GTPase TrmE [Escherichia coli 99.0670]
Length = 454
Score = 357 bits (916), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 284/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +
Sbjct: 1 MSDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + + I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHALIRLSAKTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|422371345|ref|ZP_16451726.1| tRNA modification GTPase TrmE, partial [Escherichia coli MS 16-3]
gi|315296896|gb|EFU56184.1| tRNA modification GTPase TrmE [Escherichia coli MS 16-3]
Length = 475
Score = 357 bits (916), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 194/475 (40%), Positives = 285/475 (60%), Gaps = 23/475 (4%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
+++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F +
Sbjct: 21 IMSDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKLPK---PRYADYLPFKDADG 77
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++
Sbjct: 78 SVLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSE 134
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 135 RAFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAA 194
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 195 IDFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSL 253
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IG
Sbjct: 254 LNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIG 306
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
IER W E++ +D ++++ D D + + I P +P+ V NK D +G
Sbjct: 307 IERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG 366
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
++ N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 367 MSEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQ 425
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 426 QGKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 475
>gi|312882243|ref|ZP_07741989.1| tRNA modification GTPase TrmE [Vibrio caribbenthicus ATCC BAA-2122]
gi|309370087|gb|EFP97593.1| tRNA modification GTPase TrmE [Vibrio caribbenthicus ATCC BAA-2122]
Length = 453
Score = 357 bits (915), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 200/469 (42%), Positives = 283/469 (60%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG ++ + T K L+PR+A Y +F ++ ID+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGP---LATQVASEITGKDLRPRYAEYLAFKAQDGTEIDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF PHS+TGEDV+EL GHGGP+++ ML+ L I GLR A PGEF++RAFLN+K
Sbjct: 63 ALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILTI---PGLRTARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AAKSA++SL G FS I+ L++ LI+LR +E + DFPEE
Sbjct: 120 LDLAQAEAIADLIDASSEEAAKSALMSLQGAFSGRIHTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + Q+ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LADGKVAGDLQSIIDNLAAVRQEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + +EVEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVEKIGIERAWEE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQKNINYKNN 363
+ +D ++++ D + TD K+I +F P NI + + NK D + I + N+
Sbjct: 292 ISQADRVLFMVDGTTTQETD-PKQIWPDFIDRLPDNIGITVIRNKADQTDEPLGICHVND 350
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA G+ LR L + + + E ++AR RH+ +L+ A +L I
Sbjct: 351 PTLIRLSAKTGEGVESLRLHLKQCMGFSGSNEGG-FMARRRHLEALDRAAEHLQ-----I 404
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + LS I G+ +++DLL IFS FCIGK
Sbjct: 405 GQQQLESYMAGEILAEELRITQQHLSEITGEFSSDDLLGRIFSSFCIGK 453
>gi|238750293|ref|ZP_04611795.1| tRNA modification GTPase mnmE [Yersinia rohdei ATCC 43380]
gi|238711526|gb|EEQ03742.1| tRNA modification GTPase mnmE [Yersinia rohdei ATCC 43380]
Length = 497
Score = 357 bits (915), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 284/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ I+ ATPPGRGGVGI+R+SG+ S+ + V K K PR+A Y F + +
Sbjct: 44 MSTTDTIVAQATPPGRGGVGILRVSGRAAASVAQAVLGKLPK---PRYADYLPFKDIDGS 100
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ +YF P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 101 TLDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILAL---PGLRIARPGEFSER 157
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS I+ L++ L +LR +E +
Sbjct: 158 AFLNDKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSVRIHQLVEALTHLRIYVEAAI 217
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L ++ + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 218 DFPDEEIDF-LSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLL 276
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ + N +EVE+IGI
Sbjct: 277 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAN-------DEVERIGI 329
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D T+ + + P +P+ V NK D +G +
Sbjct: 330 ERAWHEIEQADRVLFMVDGTTTDATEPAAIWPEFMARLPATLPITVVRNKADVTGETLGL 389
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N + I LSA GI+LLRN L + T E +LAR RH+ +L A +L
Sbjct: 390 TEVNGHSLIRLSARTGEGIDLLRNHLKQCMGFTSNTEGG-FLARRRHLQALETAAQHL-- 446
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + + EL+AE+LR + LS I G+ +++DLL IFS FCIGK
Sbjct: 447 ---VQGHEQLVSARAGELLAEELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 497
>gi|170681108|ref|YP_001746036.1| tRNA modification GTPase TrmE [Escherichia coli SMS-3-5]
gi|170767097|ref|ZP_02901550.1| tRNA modification GTPase TrmE [Escherichia albertii TW07627]
gi|194431305|ref|ZP_03063598.1| tRNA modification GTPase TrmE [Shigella dysenteriae 1012]
gi|218551237|ref|YP_002385029.1| tRNA modification GTPase TrmE [Escherichia fergusonii ATCC 35469]
gi|218691995|ref|YP_002400207.1| tRNA modification GTPase TrmE [Escherichia coli ED1a]
gi|222158416|ref|YP_002558555.1| tRNA modification GTPase trmE [Escherichia coli LF82]
gi|300824308|ref|ZP_07104424.1| tRNA modification GTPase TrmE [Escherichia coli MS 119-7]
gi|300903017|ref|ZP_07120959.1| tRNA modification GTPase TrmE [Escherichia coli MS 84-1]
gi|301305947|ref|ZP_07212029.1| tRNA modification GTPase TrmE [Escherichia coli MS 124-1]
gi|331649534|ref|ZP_08350620.1| tRNA modification GTPase TrmE [Escherichia coli M605]
gi|331665357|ref|ZP_08366258.1| tRNA modification GTPase TrmE [Escherichia coli TA143]
gi|331679805|ref|ZP_08380475.1| tRNA modification GTPase TrmE [Escherichia coli H591]
gi|366159304|ref|ZP_09459166.1| tRNA modification GTPase TrmE [Escherichia sp. TW09308]
gi|386621391|ref|YP_006140971.1| GTPase/tRNA-U34 5-formylation enzyme TrmE [Escherichia coli NA114]
gi|386626608|ref|YP_006146336.1| GTPase [Escherichia coli O7:K1 str. CE10]
gi|387609490|ref|YP_006098346.1| tRNA modification GTPase [Escherichia coli 042]
gi|387619013|ref|YP_006122035.1| tRNA modification GTPase TrmE [Escherichia coli O83:H1 str. NRG
857C]
gi|387831604|ref|YP_003351541.1| GTP-binding protein [Escherichia coli SE15]
gi|415864804|ref|ZP_11537776.1| tRNA modification GTPase TrmE [Escherichia coli MS 85-1]
gi|416338077|ref|ZP_11674311.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
WV_060327]
gi|416900238|ref|ZP_11929549.1| tRNA modification GTPase TrmE [Escherichia coli STEC_7v]
gi|417116749|ref|ZP_11967610.1| tRNA modification GTPase TrmE [Escherichia coli 1.2741]
gi|417664349|ref|ZP_12313928.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
AA86]
gi|417675411|ref|ZP_12324833.1| tRNA modification GTPase TrmE [Shigella dysenteriae 155-74]
gi|417692094|ref|ZP_12341299.1| tRNA modification GTPase TrmE [Shigella boydii 5216-82]
gi|418040392|ref|ZP_12678636.1| tRNA modification GTPase TrmE [Escherichia coli W26]
gi|419702554|ref|ZP_14230147.1| tRNA modification GTPase TrmE [Escherichia coli SCI-07]
gi|419867135|ref|ZP_14389473.1| tRNA modification GTPase TrmE [Escherichia coli O103:H25 str.
CVM9340]
gi|420345670|ref|ZP_14847099.1| tRNA modification GTPase TrmE [Shigella boydii 965-58]
gi|422778294|ref|ZP_16831944.1| tRNA modification GTPase TrmE [Escherichia coli H120]
gi|422801674|ref|ZP_16850170.1| tRNA modification GTPase TrmE [Escherichia coli M863]
gi|422807759|ref|ZP_16856188.1| tRNA modification GTPase TrmE [Escherichia fergusonii B253]
gi|422961856|ref|ZP_16972592.1| tRNA modification GTPase mnmE [Escherichia coli H494]
gi|427806907|ref|ZP_18973974.1| GTP-binding protein in thiophene and furan oxidation [Escherichia
coli chi7122]
gi|427811494|ref|ZP_18978559.1| GTP-binding protein in thiophene and furan oxidation [Escherichia
coli]
gi|432374329|ref|ZP_19617360.1| tRNA modification GTPase mnmE [Escherichia coli KTE11]
gi|432394389|ref|ZP_19637207.1| tRNA modification GTPase mnmE [Escherichia coli KTE21]
gi|432399666|ref|ZP_19642439.1| tRNA modification GTPase mnmE [Escherichia coli KTE25]
gi|432424123|ref|ZP_19666660.1| tRNA modification GTPase mnmE [Escherichia coli KTE178]
gi|432502274|ref|ZP_19744024.1| tRNA modification GTPase mnmE [Escherichia coli KTE216]
gi|432545557|ref|ZP_19782380.1| tRNA modification GTPase mnmE [Escherichia coli KTE236]
gi|432551036|ref|ZP_19787785.1| tRNA modification GTPase mnmE [Escherichia coli KTE237]
gi|432560985|ref|ZP_19797638.1| tRNA modification GTPase mnmE [Escherichia coli KTE49]
gi|432624093|ref|ZP_19860105.1| tRNA modification GTPase mnmE [Escherichia coli KTE76]
gi|432682364|ref|ZP_19917720.1| tRNA modification GTPase mnmE [Escherichia coli KTE143]
gi|432696584|ref|ZP_19931775.1| tRNA modification GTPase mnmE [Escherichia coli KTE162]
gi|432708114|ref|ZP_19943188.1| tRNA modification GTPase mnmE [Escherichia coli KTE6]
gi|432725184|ref|ZP_19960097.1| tRNA modification GTPase mnmE [Escherichia coli KTE17]
gi|432729792|ref|ZP_19964665.1| tRNA modification GTPase mnmE [Escherichia coli KTE18]
gi|432734474|ref|ZP_19969296.1| tRNA modification GTPase mnmE [Escherichia coli KTE45]
gi|432743481|ref|ZP_19978195.1| tRNA modification GTPase mnmE [Escherichia coli KTE23]
gi|432761559|ref|ZP_19996047.1| tRNA modification GTPase mnmE [Escherichia coli KTE46]
gi|432768094|ref|ZP_20002483.1| tRNA modification GTPase mnmE [Escherichia coli KTE50]
gi|432817512|ref|ZP_20051263.1| tRNA modification GTPase mnmE [Escherichia coli KTE115]
gi|432855729|ref|ZP_20083420.1| tRNA modification GTPase mnmE [Escherichia coli KTE144]
gi|432866477|ref|ZP_20088938.1| tRNA modification GTPase mnmE [Escherichia coli KTE146]
gi|432871476|ref|ZP_20091646.1| tRNA modification GTPase mnmE [Escherichia coli KTE147]
gi|432891276|ref|ZP_20104034.1| tRNA modification GTPase mnmE [Escherichia coli KTE165]
gi|432901278|ref|ZP_20111390.1| tRNA modification GTPase mnmE [Escherichia coli KTE192]
gi|432922973|ref|ZP_20125696.1| tRNA modification GTPase mnmE [Escherichia coli KTE173]
gi|432929582|ref|ZP_20130632.1| tRNA modification GTPase mnmE [Escherichia coli KTE175]
gi|432964494|ref|ZP_20153595.1| tRNA modification GTPase mnmE [Escherichia coli KTE202]
gi|432983226|ref|ZP_20171993.1| tRNA modification GTPase mnmE [Escherichia coli KTE211]
gi|432992865|ref|ZP_20181503.1| tRNA modification GTPase mnmE [Escherichia coli KTE217]
gi|433030662|ref|ZP_20218508.1| tRNA modification GTPase mnmE [Escherichia coli KTE109]
gi|433065187|ref|ZP_20252089.1| tRNA modification GTPase mnmE [Escherichia coli KTE125]
gi|433098548|ref|ZP_20284714.1| tRNA modification GTPase mnmE [Escherichia coli KTE139]
gi|433107977|ref|ZP_20293936.1| tRNA modification GTPase mnmE [Escherichia coli KTE148]
gi|433112993|ref|ZP_20298841.1| tRNA modification GTPase mnmE [Escherichia coli KTE150]
gi|443619785|ref|YP_007383641.1| tRNA modification GTPase TrmE [Escherichia coli APEC O78]
gi|450225594|ref|ZP_21897435.1| tRNA modification GTPase TrmE [Escherichia coli O08]
gi|205829138|sp|B1LL33.1|MNME_ECOSM RecName: Full=tRNA modification GTPase MnmE
gi|254811480|sp|B7N211.1|MNME_ECO81 RecName: Full=tRNA modification GTPase MnmE
gi|254811485|sp|B7LK49.1|MNME_ESCF3 RecName: Full=tRNA modification GTPase MnmE
gi|170124535|gb|EDS93466.1| tRNA modification GTPase TrmE [Escherichia albertii TW07627]
gi|170518826|gb|ACB17004.1| tRNA modification GTPase TrmE [Escherichia coli SMS-3-5]
gi|194420760|gb|EDX36836.1| tRNA modification GTPase TrmE [Shigella dysenteriae 1012]
gi|218358779|emb|CAQ91437.1| GTPase [Escherichia fergusonii ATCC 35469]
gi|218429559|emb|CAR10382.1| GTPase [Escherichia coli ED1a]
gi|222035421|emb|CAP78166.1| tRNA modification GTPase trmE [Escherichia coli LF82]
gi|281180761|dbj|BAI57091.1| GTP-binding protein [Escherichia coli SE15]
gi|284923790|emb|CBG36888.1| probable tRNA modification GTPase [Escherichia coli 042]
gi|300404923|gb|EFJ88461.1| tRNA modification GTPase TrmE [Escherichia coli MS 84-1]
gi|300523195|gb|EFK44264.1| tRNA modification GTPase TrmE [Escherichia coli MS 119-7]
gi|300838798|gb|EFK66558.1| tRNA modification GTPase TrmE [Escherichia coli MS 124-1]
gi|312948274|gb|ADR29101.1| tRNA modification GTPase TrmE [Escherichia coli O83:H1 str. NRG
857C]
gi|315254605|gb|EFU34573.1| tRNA modification GTPase TrmE [Escherichia coli MS 85-1]
gi|320193747|gb|EFW68380.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
WV_060327]
gi|323944179|gb|EGB40259.1| tRNA modification GTPase TrmE [Escherichia coli H120]
gi|323965768|gb|EGB61219.1| tRNA modification GTPase TrmE [Escherichia coli M863]
gi|324111604|gb|EGC05585.1| tRNA modification GTPase TrmE [Escherichia fergusonii B253]
gi|327250849|gb|EGE62551.1| tRNA modification GTPase TrmE [Escherichia coli STEC_7v]
gi|330908023|gb|EGH36542.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
AA86]
gi|331042032|gb|EGI14176.1| tRNA modification GTPase TrmE [Escherichia coli M605]
gi|331057867|gb|EGI29853.1| tRNA modification GTPase TrmE [Escherichia coli TA143]
gi|331072977|gb|EGI44302.1| tRNA modification GTPase TrmE [Escherichia coli H591]
gi|332083996|gb|EGI89203.1| tRNA modification GTPase TrmE [Shigella dysenteriae 155-74]
gi|332084896|gb|EGI90079.1| tRNA modification GTPase TrmE [Shigella boydii 5216-82]
gi|333971892|gb|AEG38697.1| GTPase/tRNA-U34 5-formylation enzyme TrmE [Escherichia coli NA114]
gi|349740344|gb|AEQ15050.1| GTPase [Escherichia coli O7:K1 str. CE10]
gi|371592598|gb|EHN81495.1| tRNA modification GTPase mnmE [Escherichia coli H494]
gi|380346382|gb|EIA34677.1| tRNA modification GTPase TrmE [Escherichia coli SCI-07]
gi|383476717|gb|EID68652.1| tRNA modification GTPase TrmE [Escherichia coli W26]
gi|386139293|gb|EIG80448.1| tRNA modification GTPase TrmE [Escherichia coli 1.2741]
gi|388333336|gb|EIK99972.1| tRNA modification GTPase TrmE [Escherichia coli O103:H25 str.
CVM9340]
gi|391275722|gb|EIQ34505.1| tRNA modification GTPase TrmE [Shigella boydii 965-58]
gi|412965089|emb|CCK49019.1| GTP-binding protein in thiophene and furan oxidation [Escherichia
coli chi7122]
gi|412971673|emb|CCJ46336.1| GTP-binding protein in thiophene and furan oxidation [Escherichia
coli]
gi|430893751|gb|ELC16075.1| tRNA modification GTPase mnmE [Escherichia coli KTE11]
gi|430912828|gb|ELC34000.1| tRNA modification GTPase mnmE [Escherichia coli KTE25]
gi|430914102|gb|ELC35210.1| tRNA modification GTPase mnmE [Escherichia coli KTE21]
gi|430941751|gb|ELC61893.1| tRNA modification GTPase mnmE [Escherichia coli KTE178]
gi|431025942|gb|ELD39028.1| tRNA modification GTPase mnmE [Escherichia coli KTE216]
gi|431070694|gb|ELD78993.1| tRNA modification GTPase mnmE [Escherichia coli KTE236]
gi|431076148|gb|ELD83658.1| tRNA modification GTPase mnmE [Escherichia coli KTE237]
gi|431088480|gb|ELD94358.1| tRNA modification GTPase mnmE [Escherichia coli KTE49]
gi|431155624|gb|ELE56370.1| tRNA modification GTPase mnmE [Escherichia coli KTE76]
gi|431217338|gb|ELF14917.1| tRNA modification GTPase mnmE [Escherichia coli KTE143]
gi|431231228|gb|ELF26996.1| tRNA modification GTPase mnmE [Escherichia coli KTE162]
gi|431254558|gb|ELF47826.1| tRNA modification GTPase mnmE [Escherichia coli KTE6]
gi|431262403|gb|ELF54393.1| tRNA modification GTPase mnmE [Escherichia coli KTE17]
gi|431270933|gb|ELF62076.1| tRNA modification GTPase mnmE [Escherichia coli KTE18]
gi|431271087|gb|ELF62229.1| tRNA modification GTPase mnmE [Escherichia coli KTE45]
gi|431281638|gb|ELF72541.1| tRNA modification GTPase mnmE [Escherichia coli KTE23]
gi|431305495|gb|ELF93818.1| tRNA modification GTPase mnmE [Escherichia coli KTE46]
gi|431321358|gb|ELG08959.1| tRNA modification GTPase mnmE [Escherichia coli KTE50]
gi|431360116|gb|ELG46729.1| tRNA modification GTPase mnmE [Escherichia coli KTE115]
gi|431397014|gb|ELG80475.1| tRNA modification GTPase mnmE [Escherichia coli KTE144]
gi|431401020|gb|ELG84374.1| tRNA modification GTPase mnmE [Escherichia coli KTE146]
gi|431407811|gb|ELG91016.1| tRNA modification GTPase mnmE [Escherichia coli KTE147]
gi|431422319|gb|ELH04512.1| tRNA modification GTPase mnmE [Escherichia coli KTE192]
gi|431430391|gb|ELH12223.1| tRNA modification GTPase mnmE [Escherichia coli KTE165]
gi|431434893|gb|ELH16507.1| tRNA modification GTPase mnmE [Escherichia coli KTE173]
gi|431440990|gb|ELH22318.1| tRNA modification GTPase mnmE [Escherichia coli KTE175]
gi|431467529|gb|ELH47537.1| tRNA modification GTPase mnmE [Escherichia coli KTE202]
gi|431488084|gb|ELH67721.1| tRNA modification GTPase mnmE [Escherichia coli KTE211]
gi|431490620|gb|ELH70230.1| tRNA modification GTPase mnmE [Escherichia coli KTE217]
gi|431540294|gb|ELI15921.1| tRNA modification GTPase mnmE [Escherichia coli KTE109]
gi|431577906|gb|ELI50524.1| tRNA modification GTPase mnmE [Escherichia coli KTE125]
gi|431612154|gb|ELI81405.1| tRNA modification GTPase mnmE [Escherichia coli KTE139]
gi|431623875|gb|ELI92501.1| tRNA modification GTPase mnmE [Escherichia coli KTE148]
gi|431624754|gb|ELI93351.1| tRNA modification GTPase mnmE [Escherichia coli KTE150]
gi|443424293|gb|AGC89197.1| tRNA modification GTPase TrmE [Escherichia coli APEC O78]
gi|449313778|gb|EMD03969.1| tRNA modification GTPase TrmE [Escherichia coli O08]
Length = 454
Score = 357 bits (915), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 284/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +
Sbjct: 1 MSDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + + I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|419929233|ref|ZP_14446916.1| tRNA modification GTPase TrmE [Escherichia coli 541-1]
gi|388403759|gb|EIL64262.1| tRNA modification GTPase TrmE [Escherichia coli 541-1]
Length = 454
Score = 357 bits (915), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 284/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +
Sbjct: 1 MSDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVIAALDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + + I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|145638177|ref|ZP_01793787.1| tRNA modification GTPase TrmE [Haemophilus influenzae PittII]
gi|145272506|gb|EDK12413.1| tRNA modification GTPase TrmE [Haemophilus influenzae PittII]
Length = 452
Score = 357 bits (915), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 196/468 (41%), Positives = 283/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + + + K K PR A Y F + I+D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPLATKVAQAILGKCPK---PRMADYLPFKDADGTILDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK+P+S+TGEDV+EL GHGG ++L +LL L+I G+RLA PGEF+++AFLN+K
Sbjct: 62 ALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQID---GIRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E A +SA+ SL G+FSK +N L+D +I LRT +E S DFP+E
Sbjct: 119 LDLAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNALVDSVIYLRTYVEASIDFPDEE 178
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + N L I +L + + K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 179 IDFLADGKIEAN-LRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGH 237
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG ++ +EVE+IGI R W E
Sbjct: 238 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LRNATDEVERIGISRAWTE 290
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D II + D+ + D K + + P +PV V NKID +G Q + + +
Sbjct: 291 IEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGY 350
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G+ LLR L + QT +LAR RH+ +L++A +L + +
Sbjct: 351 QIISLSAQTHDGVQLLREHLKQAM-GFQTGMEGGFLARRRHLDALDKAAEHLQIGLVQLT 409
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 410 EFHAG-----ELLAEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452
>gi|452750225|ref|ZP_21949977.1| tRNA modification GTPase TrmE [Pseudomonas stutzeri NF13]
gi|452005875|gb|EMD98155.1| tRNA modification GTPase TrmE [Pseudomonas stutzeri NF13]
Length = 455
Score = 357 bits (915), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 192/469 (40%), Positives = 284/469 (60%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I +AT PGRGGVGI+R+SG +I + T ++ PR+A Y +F + +ID+GL
Sbjct: 8 IAAVATAPGRGGVGIVRVSGPRAKAIAITL---TGREPTPRYAHYGAFHADDGEVIDEGL 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+++F PHS+TGEDV+EL GHGGP++L MLL C+E+G +RLA PGEF++RAFLN+K
Sbjct: 65 LLFFPGPHSFTGEDVLELQGHGGPVVLDMLLLRCIELG----VRLARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+ AA++A+ SL G+FS+ ++ L +KLI LR +E + DFPEE
Sbjct: 121 LDLAQAEAIADLIEASSAQAARNAVRSLQGEFSRRVHQLTEKLIQLRIYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + + +L +K +L ++++ + AL+R+G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDFLADGH-VLAQLNAVKTELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ + DTAG+ D ++VE+IG++R
Sbjct: 240 EAAIVTDIAGTTRDVLREHILIDGMPLHVVDTAGLRDTE-------DQVERIGVQRALSA 292
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY-KNN 363
+ +D ++ + DA + D + +++ P V + NK D SG +I + +N
Sbjct: 293 IGEADRVLLMVDASAPEAQDPLALWPEFLESSPAPNRVTLIRNKADLSGEPISIRFDENG 352
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
A + L A GI LLR L + QT ESS + AR RH+ +L A+ YL
Sbjct: 353 QATLSLCARSGEGIELLREHLKQCMGYEQTSESS-FSARRRHLDALRLADQYLQH----- 406
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 407 GHAQLTLAGAGELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 455
>gi|16131574|ref|NP_418162.1| GTPase [Escherichia coli str. K-12 substr. MG1655]
gi|82546029|ref|YP_409976.1| tRNA modification GTPase TrmE [Shigella boydii Sb227]
gi|170022257|ref|YP_001727211.1| tRNA modification GTPase TrmE [Escherichia coli ATCC 8739]
gi|170083208|ref|YP_001732528.1| tRNA modification GTPase TrmE [Escherichia coli str. K-12 substr.
DH10B]
gi|187732019|ref|YP_001882460.1| tRNA modification GTPase TrmE [Shigella boydii CDC 3083-94]
gi|188493740|ref|ZP_03001010.1| tRNA modification GTPase TrmE [Escherichia coli 53638]
gi|209921183|ref|YP_002295267.1| tRNA modification GTPase TrmE [Escherichia coli SE11]
gi|218556273|ref|YP_002389187.1| tRNA modification GTPase TrmE [Escherichia coli IAI1]
gi|238902797|ref|YP_002928593.1| tRNA modification GTPase TrmE [Escherichia coli BW2952]
gi|293413161|ref|ZP_06655827.1| tRNA modification GTPase TrmE [Escherichia coli B354]
gi|300917463|ref|ZP_07134124.1| tRNA modification GTPase TrmE [Escherichia coli MS 115-1]
gi|301020896|ref|ZP_07184953.1| tRNA modification GTPase TrmE [Escherichia coli MS 69-1]
gi|301644379|ref|ZP_07244380.1| tRNA modification GTPase TrmE [Escherichia coli MS 146-1]
gi|331644431|ref|ZP_08345560.1| tRNA modification GTPase TrmE [Escherichia coli H736]
gi|331675198|ref|ZP_08375951.1| tRNA modification GTPase TrmE [Escherichia coli TA280]
gi|331685431|ref|ZP_08386017.1| tRNA modification GTPase TrmE [Escherichia coli H299]
gi|332282504|ref|ZP_08394917.1| tRNA modification GTPase TrmE [Shigella sp. D9]
gi|386282617|ref|ZP_10060264.1| tRNA modification GTPase mnmE [Escherichia sp. 4_1_40B]
gi|386597747|ref|YP_006094147.1| tRNA modification GTPase TrmE [Escherichia coli DH1]
gi|386616528|ref|YP_006136194.1| tRNA modification GTPase TrmE [Escherichia coli UMNK88]
gi|386706981|ref|YP_006170828.1| tRNA modification GTPase trmE [Escherichia coli P12b]
gi|387614418|ref|YP_006117534.1| tRNA modification GTPase [Escherichia coli ETEC H10407]
gi|387623367|ref|YP_006130995.1| tRNA modification GTPase TrmE [Escherichia coli DH1]
gi|388479534|ref|YP_491728.1| GTPase [Escherichia coli str. K-12 substr. W3110]
gi|404377109|ref|ZP_10982250.1| tRNA modification GTPase mnmE [Escherichia sp. 1_1_43]
gi|415773928|ref|ZP_11486475.1| tRNA modification GTPase TrmE [Escherichia coli 3431]
gi|416269300|ref|ZP_11642414.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Shigella dysenteriae
CDC 74-1112]
gi|416297959|ref|ZP_11651800.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Shigella flexneri
CDC 796-83]
gi|417132742|ref|ZP_11977527.1| tRNA modification GTPase TrmE [Escherichia coli 5.0588]
gi|417142260|ref|ZP_11984835.1| tRNA modification GTPase TrmE [Escherichia coli 97.0259]
gi|417169165|ref|ZP_12001420.1| tRNA modification GTPase TrmE [Escherichia coli 99.0741]
gi|417227766|ref|ZP_12029524.1| tRNA modification GTPase TrmE [Escherichia coli 5.0959]
gi|417264138|ref|ZP_12051532.1| tRNA modification GTPase TrmE [Escherichia coli 2.3916]
gi|417273131|ref|ZP_12060478.1| tRNA modification GTPase TrmE [Escherichia coli 2.4168]
gi|417279166|ref|ZP_12066476.1| tRNA modification GTPase TrmE [Escherichia coli 3.2303]
gi|417293593|ref|ZP_12080872.1| tRNA modification GTPase TrmE [Escherichia coli B41]
gi|417310299|ref|ZP_12097115.1| tRNA modification GTPase mnmE [Escherichia coli PCN033]
gi|417610464|ref|ZP_12260955.1| tRNA modification GTPase TrmE [Escherichia coli STEC_DG131-3]
gi|417615374|ref|ZP_12265823.1| tRNA modification GTPase TrmE [Escherichia coli STEC_EH250]
gi|417620383|ref|ZP_12270784.1| tRNA modification GTPase TrmE [Escherichia coli G58-1]
gi|417631154|ref|ZP_12281388.1| tRNA modification GTPase TrmE [Escherichia coli STEC_MHI813]
gi|417636661|ref|ZP_12286868.1| tRNA modification GTPase TrmE [Escherichia coli STEC_S1191]
gi|417641658|ref|ZP_12291784.1| tRNA modification GTPase TrmE [Escherichia coli TX1999]
gi|417684413|ref|ZP_12333753.1| tRNA modification GTPase TrmE [Shigella boydii 3594-74]
gi|417946188|ref|ZP_12589410.1| tRNA modification GTPase TrmE [Escherichia coli XH140A]
gi|417976495|ref|ZP_12617288.1| tRNA modification GTPase TrmE [Escherichia coli XH001]
gi|418305341|ref|ZP_12917135.1| tRNA modification GTPase TrmE [Escherichia coli UMNF18]
gi|418955882|ref|ZP_13507815.1| tRNA modification GTPase TrmE [Escherichia coli J53]
gi|419144824|ref|ZP_13689551.1| tRNA modification GTPase TrmE [Escherichia coli DEC6A]
gi|419150712|ref|ZP_13695359.1| tRNA modification GTPase TrmE [Escherichia coli DEC6B]
gi|419156227|ref|ZP_13700782.1| tRNA modification GTPase TrmE [Escherichia coli DEC6C]
gi|419161583|ref|ZP_13706074.1| tRNA modification GTPase TrmE [Escherichia coli DEC6D]
gi|419166646|ref|ZP_13711095.1| tRNA modification GTPase TrmE [Escherichia coli DEC6E]
gi|419172667|ref|ZP_13716539.1| tRNA modification GTPase TrmE [Escherichia coli DEC7A]
gi|419177365|ref|ZP_13721173.1| tRNA modification GTPase TrmE [Escherichia coli DEC7B]
gi|419183229|ref|ZP_13726835.1| tRNA modification GTPase TrmE [Escherichia coli DEC7C]
gi|419188810|ref|ZP_13732314.1| tRNA modification GTPase TrmE [Escherichia coli DEC7D]
gi|419194194|ref|ZP_13737631.1| tRNA modification GTPase TrmE [Escherichia coli DEC7E]
gi|419372561|ref|ZP_13913665.1| tRNA modification GTPase TrmE [Escherichia coli DEC14A]
gi|419810787|ref|ZP_14335666.1| tRNA modification GTPase TrmE [Escherichia coli O32:H37 str. P4]
gi|419926354|ref|ZP_14444129.1| tRNA modification GTPase TrmE [Escherichia coli 541-15]
gi|419940070|ref|ZP_14456839.1| tRNA modification GTPase TrmE [Escherichia coli 75]
gi|419949565|ref|ZP_14465806.1| tRNA modification GTPase TrmE [Escherichia coli CUMT8]
gi|420328018|ref|ZP_14829756.1| tRNA modification GTPase TrmE [Shigella flexneri CCH060]
gi|420355378|ref|ZP_14856446.1| tRNA modification GTPase TrmE [Shigella boydii 4444-74]
gi|420388063|ref|ZP_14887395.1| tRNA modification GTPase TrmE [Escherichia coli EPECa12]
gi|421684956|ref|ZP_16124733.1| tRNA modification GTPase TrmE [Shigella flexneri 1485-80]
gi|421777124|ref|ZP_16213723.1| tRNA modification GTPase TrmE [Escherichia coli AD30]
gi|422335098|ref|ZP_16416100.1| tRNA modification GTPase mnmE [Escherichia coli 4_1_47FAA]
gi|422768506|ref|ZP_16822230.1| tRNA modification GTPase TrmE [Escherichia coli E1520]
gi|422818873|ref|ZP_16867085.1| tRNA modification GTPase mnmE [Escherichia coli M919]
gi|422976813|ref|ZP_16977191.1| tRNA modification GTPase mnmE [Escherichia coli TA124]
gi|423703234|ref|ZP_17677666.1| tRNA modification GTPase mnmE [Escherichia coli H730]
gi|425117325|ref|ZP_18519102.1| tRNA modification GTPase TrmE [Escherichia coli 8.0566]
gi|425122055|ref|ZP_18523730.1| tRNA modification GTPase TrmE [Escherichia coli 8.0569]
gi|425275007|ref|ZP_18666387.1| tRNA modification GTPase TrmE [Escherichia coli TW15901]
gi|425285585|ref|ZP_18676598.1| tRNA modification GTPase TrmE [Escherichia coli TW00353]
gi|425290922|ref|ZP_18681732.1| tRNA modification GTPase TrmE [Escherichia coli 3006]
gi|425307521|ref|ZP_18697189.1| tRNA modification GTPase TrmE [Escherichia coli N1]
gi|432419242|ref|ZP_19661833.1| tRNA modification GTPase mnmE [Escherichia coli KTE44]
gi|432487474|ref|ZP_19729380.1| tRNA modification GTPase mnmE [Escherichia coli KTE212]
gi|432536119|ref|ZP_19773074.1| tRNA modification GTPase mnmE [Escherichia coli KTE234]
gi|432577986|ref|ZP_19814432.1| tRNA modification GTPase mnmE [Escherichia coli KTE56]
gi|432604553|ref|ZP_19840780.1| tRNA modification GTPase mnmE [Escherichia coli KTE66]
gi|432619030|ref|ZP_19855127.1| tRNA modification GTPase mnmE [Escherichia coli KTE75]
gi|432629341|ref|ZP_19865306.1| tRNA modification GTPase mnmE [Escherichia coli KTE77]
gi|432638937|ref|ZP_19874800.1| tRNA modification GTPase mnmE [Escherichia coli KTE81]
gi|432662967|ref|ZP_19898595.1| tRNA modification GTPase mnmE [Escherichia coli KTE111]
gi|432672810|ref|ZP_19908328.1| tRNA modification GTPase mnmE [Escherichia coli KTE119]
gi|432687549|ref|ZP_19922837.1| tRNA modification GTPase mnmE [Escherichia coli KTE156]
gi|432689045|ref|ZP_19924311.1| tRNA modification GTPase mnmE [Escherichia coli KTE161]
gi|432706450|ref|ZP_19941544.1| tRNA modification GTPase mnmE [Escherichia coli KTE171]
gi|432739214|ref|ZP_19973942.1| tRNA modification GTPase mnmE [Escherichia coli KTE42]
gi|432878087|ref|ZP_20095536.1| tRNA modification GTPase mnmE [Escherichia coli KTE154]
gi|432957673|ref|ZP_20149079.1| tRNA modification GTPase mnmE [Escherichia coli KTE197]
gi|432965472|ref|ZP_20154395.1| tRNA modification GTPase mnmE [Escherichia coli KTE203]
gi|433050180|ref|ZP_20237503.1| tRNA modification GTPase mnmE [Escherichia coli KTE120]
gi|433132294|ref|ZP_20317715.1| tRNA modification GTPase mnmE [Escherichia coli KTE163]
gi|433136968|ref|ZP_20322291.1| tRNA modification GTPase mnmE [Escherichia coli KTE166]
gi|433175609|ref|ZP_20360112.1| tRNA modification GTPase mnmE [Escherichia coli KTE232]
gi|442595556|ref|ZP_21013402.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|450195416|ref|ZP_21892485.1| tRNA modification GTPase TrmE [Escherichia coli SEPT362]
gi|450252603|ref|ZP_21902189.1| tRNA modification GTPase TrmE [Escherichia coli S17]
gi|2851487|sp|P25522.3|MNME_ECOLI RecName: Full=tRNA modification GTPase MnmE
gi|123558283|sp|Q31UW0.1|MNME_SHIBS RecName: Full=tRNA modification GTPase MnmE
gi|189036202|sp|B1IX32.1|MNME_ECOLC RecName: Full=tRNA modification GTPase MnmE
gi|205829137|sp|B1X9T5.1|MNME_ECODH RecName: Full=tRNA modification GTPase MnmE
gi|254811481|sp|B7M559.1|MNME_ECO8A RecName: Full=tRNA modification GTPase MnmE
gi|254811483|sp|B6I3T9.1|MNME_ECOSE RecName: Full=tRNA modification GTPase MnmE
gi|254811497|sp|B2TUS2.1|MNME_SHIB3 RecName: Full=tRNA modification GTPase MnmE
gi|259495841|sp|C4ZYY4.1|MNME_ECOBW RecName: Full=tRNA modification GTPase MnmE
gi|2367268|gb|AAC76729.1| GTPase required for 5-methylaminomethyl-2-thiouridine modification
at tRNA U34 [Escherichia coli str. K-12 substr. MG1655]
gi|81247440|gb|ABB68148.1| ThdF [Shigella boydii Sb227]
gi|85676337|dbj|BAE77587.1| GTPase [Escherichia coli str. K12 substr. W3110]
gi|169757185|gb|ACA79884.1| tRNA modification GTPase TrmE [Escherichia coli ATCC 8739]
gi|169891043|gb|ACB04750.1| GTPase [Escherichia coli str. K-12 substr. DH10B]
gi|187429011|gb|ACD08285.1| tRNA modification GTPase TrmE [Shigella boydii CDC 3083-94]
gi|188488939|gb|EDU64042.1| tRNA modification GTPase TrmE [Escherichia coli 53638]
gi|209914442|dbj|BAG79516.1| GTP-binding protein [Escherichia coli SE11]
gi|218363042|emb|CAR00681.1| GTPase [Escherichia coli IAI1]
gi|226838890|gb|EEH70917.1| tRNA modification GTPase mnmE [Escherichia sp. 1_1_43]
gi|238861389|gb|ACR63387.1| GTPase [Escherichia coli BW2952]
gi|260451436|gb|ACX41858.1| tRNA modification GTPase TrmE [Escherichia coli DH1]
gi|291468294|gb|EFF10789.1| tRNA modification GTPase TrmE [Escherichia coli B354]
gi|300398391|gb|EFJ81929.1| tRNA modification GTPase TrmE [Escherichia coli MS 69-1]
gi|300415307|gb|EFJ98617.1| tRNA modification GTPase TrmE [Escherichia coli MS 115-1]
gi|301077320|gb|EFK92126.1| tRNA modification GTPase TrmE [Escherichia coli MS 146-1]
gi|309704154|emb|CBJ03501.1| probable tRNA modification GTPase [Escherichia coli ETEC H10407]
gi|315138291|dbj|BAJ45450.1| tRNA modification GTPase TrmE [Escherichia coli DH1]
gi|315618588|gb|EFU99174.1| tRNA modification GTPase TrmE [Escherichia coli 3431]
gi|320174820|gb|EFW49943.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Shigella dysenteriae
CDC 74-1112]
gi|320185529|gb|EFW60295.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Shigella flexneri
CDC 796-83]
gi|323934942|gb|EGB31320.1| tRNA modification GTPase TrmE [Escherichia coli E1520]
gi|331036725|gb|EGI08951.1| tRNA modification GTPase TrmE [Escherichia coli H736]
gi|331067643|gb|EGI39045.1| tRNA modification GTPase TrmE [Escherichia coli TA280]
gi|331077802|gb|EGI49014.1| tRNA modification GTPase TrmE [Escherichia coli H299]
gi|332089435|gb|EGI94539.1| tRNA modification GTPase TrmE [Shigella boydii 3594-74]
gi|332104856|gb|EGJ08202.1| tRNA modification GTPase TrmE [Shigella sp. D9]
gi|332345697|gb|AEE59031.1| tRNA modification GTPase TrmE [Escherichia coli UMNK88]
gi|338768147|gb|EGP22951.1| tRNA modification GTPase mnmE [Escherichia coli PCN033]
gi|339417439|gb|AEJ59111.1| tRNA modification GTPase TrmE [Escherichia coli UMNF18]
gi|342362073|gb|EGU26198.1| tRNA modification GTPase TrmE [Escherichia coli XH140A]
gi|344193918|gb|EGV47995.1| tRNA modification GTPase TrmE [Escherichia coli XH001]
gi|345353640|gb|EGW85871.1| tRNA modification GTPase TrmE [Escherichia coli STEC_DG131-3]
gi|345357899|gb|EGW90088.1| tRNA modification GTPase TrmE [Escherichia coli STEC_EH250]
gi|345369600|gb|EGX01582.1| tRNA modification GTPase TrmE [Escherichia coli G58-1]
gi|345370433|gb|EGX02411.1| tRNA modification GTPase TrmE [Escherichia coli STEC_MHI813]
gi|345384927|gb|EGX14779.1| tRNA modification GTPase TrmE [Escherichia coli STEC_S1191]
gi|345390622|gb|EGX20420.1| tRNA modification GTPase TrmE [Escherichia coli TX1999]
gi|359333851|dbj|BAL40298.1| GTPase [Escherichia coli str. K-12 substr. MDS42]
gi|371593863|gb|EHN82738.1| tRNA modification GTPase mnmE [Escherichia coli TA124]
gi|373243886|gb|EHP63382.1| tRNA modification GTPase mnmE [Escherichia coli 4_1_47FAA]
gi|377988993|gb|EHV52163.1| tRNA modification GTPase TrmE [Escherichia coli DEC6B]
gi|377989254|gb|EHV52422.1| tRNA modification GTPase TrmE [Escherichia coli DEC6A]
gi|377993296|gb|EHV56434.1| tRNA modification GTPase TrmE [Escherichia coli DEC6C]
gi|378004091|gb|EHV67122.1| tRNA modification GTPase TrmE [Escherichia coli DEC6D]
gi|378006870|gb|EHV69843.1| tRNA modification GTPase TrmE [Escherichia coli DEC6E]
gi|378011377|gb|EHV74321.1| tRNA modification GTPase TrmE [Escherichia coli DEC7A]
gi|378021124|gb|EHV83846.1| tRNA modification GTPase TrmE [Escherichia coli DEC7C]
gi|378024830|gb|EHV87483.1| tRNA modification GTPase TrmE [Escherichia coli DEC7D]
gi|378029407|gb|EHV92019.1| tRNA modification GTPase TrmE [Escherichia coli DEC7B]
gi|378034615|gb|EHV97180.1| tRNA modification GTPase TrmE [Escherichia coli DEC7E]
gi|378212026|gb|EHX72353.1| tRNA modification GTPase TrmE [Escherichia coli DEC14A]
gi|383105149|gb|AFG42658.1| tRNA modification GTPase trmE [Escherichia coli P12b]
gi|384381273|gb|EIE39132.1| tRNA modification GTPase TrmE [Escherichia coli J53]
gi|385156422|gb|EIF18419.1| tRNA modification GTPase TrmE [Escherichia coli O32:H37 str. P4]
gi|385537676|gb|EIF84546.1| tRNA modification GTPase mnmE [Escherichia coli M919]
gi|385708597|gb|EIG45606.1| tRNA modification GTPase mnmE [Escherichia coli H730]
gi|386120240|gb|EIG68870.1| tRNA modification GTPase mnmE [Escherichia sp. 4_1_40B]
gi|386150596|gb|EIH01885.1| tRNA modification GTPase TrmE [Escherichia coli 5.0588]
gi|386155284|gb|EIH11639.1| tRNA modification GTPase TrmE [Escherichia coli 97.0259]
gi|386170305|gb|EIH42365.1| tRNA modification GTPase TrmE [Escherichia coli 99.0741]
gi|386207101|gb|EII11606.1| tRNA modification GTPase TrmE [Escherichia coli 5.0959]
gi|386221847|gb|EII44276.1| tRNA modification GTPase TrmE [Escherichia coli 2.3916]
gi|386234308|gb|EII66286.1| tRNA modification GTPase TrmE [Escherichia coli 2.4168]
gi|386237943|gb|EII74883.1| tRNA modification GTPase TrmE [Escherichia coli 3.2303]
gi|386251781|gb|EIJ01473.1| tRNA modification GTPase TrmE [Escherichia coli B41]
gi|388382954|gb|EIL44767.1| tRNA modification GTPase TrmE [Escherichia coli 541-15]
gi|388404832|gb|EIL65279.1| tRNA modification GTPase TrmE [Escherichia coli 75]
gi|388418895|gb|EIL78668.1| tRNA modification GTPase TrmE [Escherichia coli CUMT8]
gi|391245683|gb|EIQ04950.1| tRNA modification GTPase TrmE [Shigella flexneri CCH060]
gi|391272682|gb|EIQ31524.1| tRNA modification GTPase TrmE [Shigella boydii 4444-74]
gi|391301735|gb|EIQ59617.1| tRNA modification GTPase TrmE [Escherichia coli EPECa12]
gi|404334922|gb|EJZ61397.1| tRNA modification GTPase TrmE [Shigella flexneri 1485-80]
gi|408189750|gb|EKI15449.1| tRNA modification GTPase TrmE [Escherichia coli TW15901]
gi|408197990|gb|EKI23236.1| tRNA modification GTPase TrmE [Escherichia coli TW00353]
gi|408209161|gb|EKI33769.1| tRNA modification GTPase TrmE [Escherichia coli 3006]
gi|408225241|gb|EKI48928.1| tRNA modification GTPase TrmE [Escherichia coli N1]
gi|408457810|gb|EKJ81602.1| tRNA modification GTPase TrmE [Escherichia coli AD30]
gi|408563705|gb|EKK39836.1| tRNA modification GTPase TrmE [Escherichia coli 8.0566]
gi|408564800|gb|EKK40901.1| tRNA modification GTPase TrmE [Escherichia coli 8.0569]
gi|430936298|gb|ELC56581.1| tRNA modification GTPase mnmE [Escherichia coli KTE44]
gi|431013306|gb|ELD27039.1| tRNA modification GTPase mnmE [Escherichia coli KTE212]
gi|431057492|gb|ELD66935.1| tRNA modification GTPase mnmE [Escherichia coli KTE234]
gi|431111953|gb|ELE15843.1| tRNA modification GTPase mnmE [Escherichia coli KTE56]
gi|431137020|gb|ELE38874.1| tRNA modification GTPase mnmE [Escherichia coli KTE66]
gi|431150545|gb|ELE51595.1| tRNA modification GTPase mnmE [Escherichia coli KTE75]
gi|431160277|gb|ELE60792.1| tRNA modification GTPase mnmE [Escherichia coli KTE77]
gi|431168413|gb|ELE68659.1| tRNA modification GTPase mnmE [Escherichia coli KTE81]
gi|431196664|gb|ELE95577.1| tRNA modification GTPase mnmE [Escherichia coli KTE111]
gi|431207511|gb|ELF05767.1| tRNA modification GTPase mnmE [Escherichia coli KTE119]
gi|431219200|gb|ELF16618.1| tRNA modification GTPase mnmE [Escherichia coli KTE156]
gi|431234515|gb|ELF29914.1| tRNA modification GTPase mnmE [Escherichia coli KTE161]
gi|431240640|gb|ELF35091.1| tRNA modification GTPase mnmE [Escherichia coli KTE171]
gi|431279314|gb|ELF70282.1| tRNA modification GTPase mnmE [Escherichia coli KTE42]
gi|431417327|gb|ELG99790.1| tRNA modification GTPase mnmE [Escherichia coli KTE154]
gi|431463551|gb|ELH43741.1| tRNA modification GTPase mnmE [Escherichia coli KTE197]
gi|431476964|gb|ELH56751.1| tRNA modification GTPase mnmE [Escherichia coli KTE203]
gi|431562027|gb|ELI35363.1| tRNA modification GTPase mnmE [Escherichia coli KTE120]
gi|431642649|gb|ELJ10371.1| tRNA modification GTPase mnmE [Escherichia coli KTE163]
gi|431653165|gb|ELJ20277.1| tRNA modification GTPase mnmE [Escherichia coli KTE166]
gi|431687749|gb|ELJ53291.1| tRNA modification GTPase mnmE [Escherichia coli KTE232]
gi|441604405|emb|CCP98536.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|449314678|gb|EMD04841.1| tRNA modification GTPase TrmE [Escherichia coli S17]
gi|449316409|gb|EMD06525.1| tRNA modification GTPase TrmE [Escherichia coli SEPT362]
Length = 454
Score = 357 bits (915), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 284/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +
Sbjct: 1 MSDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + + I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|149911784|ref|ZP_01900388.1| tRNA modification GTPase [Moritella sp. PE36]
gi|149805130|gb|EDM65152.1| tRNA modification GTPase [Moritella sp. PE36]
Length = 454
Score = 357 bits (915), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 199/475 (41%), Positives = 287/475 (60%), Gaps = 24/475 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
MLT N II ATPPGRGGVGIIR+SG + + + K R A Y SF ++
Sbjct: 1 MLT-NETIIAQATPPGRGGVGIIRISGAKTELVAQTILNKIPA---VRKADYLSFLDEDQ 56
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID+G+ I FKAP+S+TGEDV+EL GHGGP+I+ ML+ L+I G+R+A PGEF++
Sbjct: 57 QTIDQGIAILFKAPNSFTGEDVLELQGHGGPVIMDMLMRRILKID---GIRMARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+K+DL Q EAI DLI+A++E AAKSAM SL G+FSK IN L + LI+LR +E +
Sbjct: 114 RAFLNDKMDLTQAEAIADLIDATSERAAKSAMNSLQGEFSKKINTLTESLIHLRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + L L I L + ++ K+ A+IR G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEVDF-LADGKIAQALYNIMDNLSAVQKEAKQGAIIREGMKVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + + VE+IG
Sbjct: 233 LNALAGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRD-------SPDRVEQIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
IER W E+ N+D ++++ D TD + I P +I + + NK+D +G
Sbjct: 286 IERAWQEINNADQVLFMVDGTTTDATDPAEIWPDFIDRLPSSIGLTVIRNKVDLTGETLT 345
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
++ + +SA + +G++ L++ L + E ++AR RH+ +L +A+ +L
Sbjct: 346 VSDDQSHPVFKISAKENLGLDELKDHLKQCMGYKSNTEGG-FIARRRHLDALEKADEHLQ 404
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
I + + K EL+AE+LR ++LS I G+ +++DLL IF+ FCIGK
Sbjct: 405 -----IGKQQLEVYKAGELLAEELRLAQQQLSEITGEFSSDDLLGRIFTSFCIGK 454
>gi|399523224|ref|ZP_10763882.1| tRNA modification GTPase mnmE [Pseudomonas pseudoalcaligenes CECT
5344]
gi|399109027|emb|CCH40445.1| tRNA modification GTPase mnmE [Pseudomonas pseudoalcaligenes CECT
5344]
Length = 455
Score = 357 bits (915), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 187/469 (39%), Positives = 283/469 (60%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I +AT GRGGVGI+R+SG + + +C++ +LKPRFA + F+ ++ +D+GL
Sbjct: 8 IAAVATAQGRGGVGIVRVSGPLAGQLAQAICRR---ELKPRFAHHGPFYGESELTLDEGL 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
IYF P+S+TGEDV+EL GHGGP++L +LL C+ ++G RLA PGEF++RAFLN+K
Sbjct: 65 AIYFPGPNSFTGEDVLELQGHGGPVVLDLLLRRCM----ALGARLARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+E AA++A+ SL G+FSK ++ L + LI LR +E + DFPEE
Sbjct: 121 LDLAQAEAIADLIEASSEQAARNALRSLQGEFSKRVHALTESLIQLRIYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + + ++L ++ L ++++ + AL+R+G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDFLADGH-VLSQLDSVRTDLSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ + DTAG+ D + ++VE+IG+ER
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTD-------DQVERIGVERALKA 292
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYK-NN 363
+ +D ++ V D+ + D + ++ P V + NK D SG + +
Sbjct: 293 IGEADRVLLVVDSTAPEAADPFALWPEFLEQRPDPARVTLIRNKADLSGEAVALQTSADG 352
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
+ LSA G++LLR L + QT ES + AR RH+ +L++A YL
Sbjct: 353 HVTLSLSAKSTDGLDLLREHLKACMGYQQTAESG-FSARRRHLEALHQAEQYLEH----- 406
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 407 GRNQLTLMGAGELLAEDLRMAQQALGEITGAFSSDDLLGRIFSSFCIGK 455
>gi|422375951|ref|ZP_16456209.1| tRNA modification GTPase TrmE, partial [Escherichia coli MS 60-1]
gi|324012741|gb|EGB81960.1| tRNA modification GTPase TrmE [Escherichia coli MS 60-1]
Length = 481
Score = 357 bits (915), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 194/475 (40%), Positives = 285/475 (60%), Gaps = 23/475 (4%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
+++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F +
Sbjct: 27 IMSDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKLPK---PRYADYLPFKDADG 83
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++
Sbjct: 84 SVLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSE 140
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 141 RAFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAA 200
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 201 IDFPDEEIDF-LSDGKIEAQLNNVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSL 259
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IG
Sbjct: 260 LNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIG 312
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
IER W E++ +D ++++ D D + + I P +P+ V NK D +G
Sbjct: 313 IERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG 372
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
++ N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 373 MSEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQ 431
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 432 QGKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 481
>gi|215489046|ref|YP_002331477.1| tRNA modification GTPase TrmE [Escherichia coli O127:H6 str.
E2348/69]
gi|312967884|ref|ZP_07782096.1| tRNA modification GTPase TrmE [Escherichia coli 2362-75]
gi|417758141|ref|ZP_12406202.1| tRNA modification GTPase TrmE [Escherichia coli DEC2B]
gi|418999163|ref|ZP_13546740.1| tRNA modification GTPase TrmE [Escherichia coli DEC1A]
gi|419004522|ref|ZP_13552030.1| tRNA modification GTPase TrmE [Escherichia coli DEC1B]
gi|419010204|ref|ZP_13557612.1| tRNA modification GTPase TrmE [Escherichia coli DEC1C]
gi|419015905|ref|ZP_13563239.1| tRNA modification GTPase TrmE [Escherichia coli DEC1D]
gi|419020830|ref|ZP_13568127.1| tRNA modification GTPase TrmE [Escherichia coli DEC1E]
gi|419026283|ref|ZP_13573496.1| tRNA modification GTPase TrmE [Escherichia coli DEC2A]
gi|419031429|ref|ZP_13578569.1| tRNA modification GTPase TrmE [Escherichia coli DEC2C]
gi|419037059|ref|ZP_13584130.1| tRNA modification GTPase TrmE [Escherichia coli DEC2D]
gi|419042131|ref|ZP_13589146.1| tRNA modification GTPase TrmE [Escherichia coli DEC2E]
gi|254811475|sp|B7UMH3.1|MNME_ECO27 RecName: Full=tRNA modification GTPase MnmE
gi|215267118|emb|CAS11565.1| GTPase [Escherichia coli O127:H6 str. E2348/69]
gi|312287445|gb|EFR15353.1| tRNA modification GTPase TrmE [Escherichia coli 2362-75]
gi|377839142|gb|EHU04241.1| tRNA modification GTPase TrmE [Escherichia coli DEC1C]
gi|377839211|gb|EHU04309.1| tRNA modification GTPase TrmE [Escherichia coli DEC1A]
gi|377841930|gb|EHU06986.1| tRNA modification GTPase TrmE [Escherichia coli DEC1B]
gi|377853024|gb|EHU17931.1| tRNA modification GTPase TrmE [Escherichia coli DEC1D]
gi|377856791|gb|EHU21650.1| tRNA modification GTPase TrmE [Escherichia coli DEC1E]
gi|377858349|gb|EHU23189.1| tRNA modification GTPase TrmE [Escherichia coli DEC2A]
gi|377870449|gb|EHU35133.1| tRNA modification GTPase TrmE [Escherichia coli DEC2B]
gi|377872280|gb|EHU36927.1| tRNA modification GTPase TrmE [Escherichia coli DEC2C]
gi|377874730|gb|EHU39356.1| tRNA modification GTPase TrmE [Escherichia coli DEC2D]
gi|377886143|gb|EHU50628.1| tRNA modification GTPase TrmE [Escherichia coli DEC2E]
Length = 454
Score = 357 bits (915), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 284/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +
Sbjct: 1 MSDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + + I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 347 SELNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|416052975|ref|ZP_11578610.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
gi|347991767|gb|EGY33230.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
Length = 451
Score = 357 bits (915), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 196/470 (41%), Positives = 284/470 (60%), Gaps = 28/470 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + + V K K PR A Y F + ++D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPKAVEVAQAVLGKCPK---PRMADYLPFKEADGTVLDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK P+S+TGEDV+EL GHGG ++L +LL L I G+RLA PGEF+++AFLN+K
Sbjct: 62 ALYFKGPNSFTGEDVLELQGHGGQVVLDLLLKRILRIE---GIRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AA+SA+ SL GKFS +N L+D +I LRT +E + DFP+E
Sbjct: 119 LDLAQAEAIADLIDASSEQAARSALKSLQGKFSNKVNQLVDSVIYLRTYVEAAIDFPDEE 178
Query: 188 QELILNK--NDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLV 245
+ + + N++I +L K+ + K+ +++R G+ VV+ G+PN GKSSL N+L
Sbjct: 179 IDFLADGKIEGHLNDII---AQLDKVRAEAKQGSILREGMKVVIAGRPNAGKSSLLNALA 235
Query: 246 GSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTW 305
G + AIVT IAGTTRD + + I ++ I DTAG+ D +EVE+IGI R W
Sbjct: 236 GREAAIVTDIAGTTRDVLREHIHLDGMPLHIIDTAGLRDAT-------DEVERIGISRAW 288
Query: 306 VELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKN 362
E++ +D I+ + D+ D D K + + P NIP+ + NK D SG + + ++
Sbjct: 289 HEIEQADRILLMLDS-SDTEQDLTKVRSEFLAKLPNNIPLTIIRNKADLSGEAERLYEED 347
Query: 363 NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKI 422
+ LSA + G++LLR+ L + QT +LAR RH+ +L A +L
Sbjct: 348 GYTVVNLSAKTQQGLDLLRDHLKQAM-GYQTGMEGGFLARRRHLEALELAAQHLQLGQVQ 406
Query: 423 INQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ Q + EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 407 LTQFQAG-----ELLAEELRMVQSALSEITGQFTSDDLLTNIFSSFCIGK 451
>gi|26250447|ref|NP_756487.1| tRNA modification GTPase TrmE [Escherichia coli CFT073]
gi|91213231|ref|YP_543217.1| tRNA modification GTPase TrmE [Escherichia coli UTI89]
gi|110644049|ref|YP_671779.1| tRNA modification GTPase TrmE [Escherichia coli 536]
gi|117625981|ref|YP_859304.1| tRNA modification GTPase TrmE [Escherichia coli APEC O1]
gi|191170442|ref|ZP_03031995.1| tRNA modification GTPase TrmE [Escherichia coli F11]
gi|218560782|ref|YP_002393695.1| tRNA modification GTPase TrmE [Escherichia coli S88]
gi|227883929|ref|ZP_04001734.1| tRNA modification GTPase TrmE [Escherichia coli 83972]
gi|237703508|ref|ZP_04533989.1| tRNA modification GTPase mnmE [Escherichia sp. 3_2_53FAA]
gi|306815940|ref|ZP_07450078.1| tRNA modification GTPase TrmE [Escherichia coli NC101]
gi|331660050|ref|ZP_08360988.1| tRNA modification GTPase TrmE [Escherichia coli TA206]
gi|386601744|ref|YP_006103250.1| tRNA modification GTPase TrmE [Escherichia coli IHE3034]
gi|386606299|ref|YP_006112599.1| tRNA modification GTPase TrmE [Escherichia coli UM146]
gi|386631651|ref|YP_006151371.1| tRNA modification GTPase TrmE [Escherichia coli str. 'clone D i2']
gi|386636571|ref|YP_006156290.1| tRNA modification GTPase TrmE [Escherichia coli str. 'clone D i14']
gi|386641355|ref|YP_006108153.1| tRNA modification GTPase TrmE [Escherichia coli ABU 83972]
gi|417087604|ref|ZP_11954532.1| tRNA modification GTPase TrmE [Escherichia coli cloneA_i1]
gi|419911483|ref|ZP_14429965.1| tRNA modification GTPase TrmE [Escherichia coli KD1]
gi|419943751|ref|ZP_14460264.1| tRNA modification GTPase TrmE [Escherichia coli HM605]
gi|422751566|ref|ZP_16805475.1| tRNA modification GTPase TrmE [Escherichia coli H252]
gi|422756593|ref|ZP_16810415.1| tRNA modification GTPase TrmE [Escherichia coli H263]
gi|422841754|ref|ZP_16889723.1| tRNA modification GTPase mnmE [Escherichia coli H397]
gi|432360173|ref|ZP_19603385.1| tRNA modification GTPase mnmE [Escherichia coli KTE4]
gi|432364973|ref|ZP_19608127.1| tRNA modification GTPase mnmE [Escherichia coli KTE5]
gi|432383616|ref|ZP_19626541.1| tRNA modification GTPase mnmE [Escherichia coli KTE15]
gi|432389524|ref|ZP_19632403.1| tRNA modification GTPase mnmE [Escherichia coli KTE16]
gi|432408789|ref|ZP_19651491.1| tRNA modification GTPase mnmE [Escherichia coli KTE28]
gi|432413984|ref|ZP_19656637.1| tRNA modification GTPase mnmE [Escherichia coli KTE39]
gi|432433944|ref|ZP_19676367.1| tRNA modification GTPase mnmE [Escherichia coli KTE187]
gi|432438676|ref|ZP_19681053.1| tRNA modification GTPase mnmE [Escherichia coli KTE188]
gi|432443251|ref|ZP_19685584.1| tRNA modification GTPase mnmE [Escherichia coli KTE189]
gi|432448396|ref|ZP_19690691.1| tRNA modification GTPase mnmE [Escherichia coli KTE191]
gi|432458862|ref|ZP_19701036.1| tRNA modification GTPase mnmE [Escherichia coli KTE201]
gi|432473072|ref|ZP_19715108.1| tRNA modification GTPase mnmE [Escherichia coli KTE206]
gi|432497856|ref|ZP_19739647.1| tRNA modification GTPase mnmE [Escherichia coli KTE214]
gi|432506612|ref|ZP_19748330.1| tRNA modification GTPase mnmE [Escherichia coli KTE220]
gi|432516108|ref|ZP_19753323.1| tRNA modification GTPase mnmE [Escherichia coli KTE224]
gi|432526193|ref|ZP_19763305.1| tRNA modification GTPase mnmE [Escherichia coli KTE230]
gi|432555800|ref|ZP_19792517.1| tRNA modification GTPase mnmE [Escherichia coli KTE47]
gi|432570994|ref|ZP_19807499.1| tRNA modification GTPase mnmE [Escherichia coli KTE53]
gi|432575961|ref|ZP_19812430.1| tRNA modification GTPase mnmE [Escherichia coli KTE55]
gi|432590172|ref|ZP_19826523.1| tRNA modification GTPase mnmE [Escherichia coli KTE58]
gi|432594933|ref|ZP_19831244.1| tRNA modification GTPase mnmE [Escherichia coli KTE60]
gi|432599976|ref|ZP_19836245.1| tRNA modification GTPase mnmE [Escherichia coli KTE62]
gi|432605158|ref|ZP_19841367.1| tRNA modification GTPase mnmE [Escherichia coli KTE67]
gi|432613722|ref|ZP_19849879.1| tRNA modification GTPase mnmE [Escherichia coli KTE72]
gi|432648390|ref|ZP_19884175.1| tRNA modification GTPase mnmE [Escherichia coli KTE86]
gi|432653375|ref|ZP_19889111.1| tRNA modification GTPase mnmE [Escherichia coli KTE87]
gi|432657955|ref|ZP_19893651.1| tRNA modification GTPase mnmE [Escherichia coli KTE93]
gi|432701234|ref|ZP_19936378.1| tRNA modification GTPase mnmE [Escherichia coli KTE169]
gi|432715579|ref|ZP_19950603.1| tRNA modification GTPase mnmE [Escherichia coli KTE8]
gi|432747694|ref|ZP_19982355.1| tRNA modification GTPase mnmE [Escherichia coli KTE43]
gi|432756676|ref|ZP_19991219.1| tRNA modification GTPase mnmE [Escherichia coli KTE22]
gi|432780753|ref|ZP_20014972.1| tRNA modification GTPase mnmE [Escherichia coli KTE59]
gi|432785706|ref|ZP_20019882.1| tRNA modification GTPase mnmE [Escherichia coli KTE63]
gi|432789745|ref|ZP_20023871.1| tRNA modification GTPase mnmE [Escherichia coli KTE65]
gi|432803954|ref|ZP_20037904.1| tRNA modification GTPase mnmE [Escherichia coli KTE84]
gi|432823181|ref|ZP_20056868.1| tRNA modification GTPase mnmE [Escherichia coli KTE118]
gi|432824641|ref|ZP_20058304.1| tRNA modification GTPase mnmE [Escherichia coli KTE123]
gi|432846849|ref|ZP_20079452.1| tRNA modification GTPase mnmE [Escherichia coli KTE141]
gi|432907489|ref|ZP_20115926.1| tRNA modification GTPase mnmE [Escherichia coli KTE194]
gi|432940526|ref|ZP_20138440.1| tRNA modification GTPase mnmE [Escherichia coli KTE183]
gi|432973992|ref|ZP_20162835.1| tRNA modification GTPase mnmE [Escherichia coli KTE207]
gi|432975944|ref|ZP_20164776.1| tRNA modification GTPase mnmE [Escherichia coli KTE209]
gi|432987565|ref|ZP_20176276.1| tRNA modification GTPase mnmE [Escherichia coli KTE215]
gi|432997503|ref|ZP_20186083.1| tRNA modification GTPase mnmE [Escherichia coli KTE218]
gi|433002099|ref|ZP_20190616.1| tRNA modification GTPase mnmE [Escherichia coli KTE223]
gi|433002619|ref|ZP_20191128.1| tRNA modification GTPase mnmE [Escherichia coli KTE227]
gi|433009921|ref|ZP_20198332.1| tRNA modification GTPase mnmE [Escherichia coli KTE229]
gi|433016039|ref|ZP_20204366.1| tRNA modification GTPase mnmE [Escherichia coli KTE104]
gi|433025629|ref|ZP_20213596.1| tRNA modification GTPase mnmE [Escherichia coli KTE106]
gi|433040735|ref|ZP_20228321.1| tRNA modification GTPase mnmE [Escherichia coli KTE113]
gi|433060244|ref|ZP_20247275.1| tRNA modification GTPase mnmE [Escherichia coli KTE124]
gi|433079919|ref|ZP_20266435.1| tRNA modification GTPase mnmE [Escherichia coli KTE131]
gi|433084646|ref|ZP_20271091.1| tRNA modification GTPase mnmE [Escherichia coli KTE133]
gi|433089447|ref|ZP_20275805.1| tRNA modification GTPase mnmE [Escherichia coli KTE137]
gi|433103317|ref|ZP_20289386.1| tRNA modification GTPase mnmE [Escherichia coli KTE145]
gi|433117651|ref|ZP_20303430.1| tRNA modification GTPase mnmE [Escherichia coli KTE153]
gi|433127353|ref|ZP_20312894.1| tRNA modification GTPase mnmE [Escherichia coli KTE160]
gi|433141427|ref|ZP_20326664.1| tRNA modification GTPase mnmE [Escherichia coli KTE167]
gi|433146356|ref|ZP_20331486.1| tRNA modification GTPase mnmE [Escherichia coli KTE168]
gi|433151379|ref|ZP_20336375.1| tRNA modification GTPase mnmE [Escherichia coli KTE174]
gi|433155908|ref|ZP_20340834.1| tRNA modification GTPase mnmE [Escherichia coli KTE176]
gi|433165737|ref|ZP_20350462.1| tRNA modification GTPase mnmE [Escherichia coli KTE179]
gi|433170732|ref|ZP_20355348.1| tRNA modification GTPase mnmE [Escherichia coli KTE180]
gi|433190525|ref|ZP_20374611.1| tRNA modification GTPase mnmE [Escherichia coli KTE88]
gi|433200485|ref|ZP_20384366.1| tRNA modification GTPase mnmE [Escherichia coli KTE94]
gi|433209869|ref|ZP_20393532.1| tRNA modification GTPase mnmE [Escherichia coli KTE97]
gi|433214748|ref|ZP_20398322.1| tRNA modification GTPase mnmE [Escherichia coli KTE99]
gi|433321672|ref|ZP_20399230.1| tRNA modification GTPase TrmE [Escherichia coli J96]
gi|442605758|ref|ZP_21020574.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
Nissle 1917]
gi|32171844|sp|Q8FBV3.1|MNME_ECOL6 RecName: Full=tRNA modification GTPase MnmE
gi|122421834|sp|Q1R4M8.1|MNME_ECOUT RecName: Full=tRNA modification GTPase MnmE
gi|123048671|sp|Q0TB01.1|MNME_ECOL5 RecName: Full=tRNA modification GTPase MnmE
gi|166200477|sp|A1AHP0.1|MNME_ECOK1 RecName: Full=tRNA modification GTPase MnmE
gi|254811476|sp|B7MGC8.1|MNME_ECO45 RecName: Full=tRNA modification GTPase MnmE
gi|26110877|gb|AAN83061.1|AE016769_176 Probable tRNA modification GTPase trmE [Escherichia coli CFT073]
gi|91074805|gb|ABE09686.1| probable tRNA modification GTPase TrmE [Escherichia coli UTI89]
gi|110345641|gb|ABG71878.1| probable tRNA modification GTPase TrmE [Escherichia coli 536]
gi|115515105|gb|ABJ03180.1| tRNA modification GTPase [Escherichia coli APEC O1]
gi|190909250|gb|EDV68836.1| tRNA modification GTPase TrmE [Escherichia coli F11]
gi|218367551|emb|CAR05336.1| GTPase [Escherichia coli S88]
gi|226902772|gb|EEH89031.1| tRNA modification GTPase mnmE [Escherichia sp. 3_2_53FAA]
gi|227839207|gb|EEJ49673.1| tRNA modification GTPase TrmE [Escherichia coli 83972]
gi|294489502|gb|ADE88258.1| tRNA modification GTPase TrmE [Escherichia coli IHE3034]
gi|305850336|gb|EFM50793.1| tRNA modification GTPase TrmE [Escherichia coli NC101]
gi|307555847|gb|ADN48622.1| tRNA modification GTPase TrmE [Escherichia coli ABU 83972]
gi|307628783|gb|ADN73087.1| tRNA modification GTPase TrmE [Escherichia coli UM146]
gi|323949951|gb|EGB45835.1| tRNA modification GTPase TrmE [Escherichia coli H252]
gi|323954998|gb|EGB50776.1| tRNA modification GTPase TrmE [Escherichia coli H263]
gi|331053265|gb|EGI25298.1| tRNA modification GTPase TrmE [Escherichia coli TA206]
gi|355349704|gb|EHF98907.1| tRNA modification GTPase TrmE [Escherichia coli cloneA_i1]
gi|355422550|gb|AER86747.1| tRNA modification GTPase TrmE [Escherichia coli str. 'clone D i2']
gi|355427470|gb|AER91666.1| tRNA modification GTPase TrmE [Escherichia coli str. 'clone D i14']
gi|371604072|gb|EHN92706.1| tRNA modification GTPase mnmE [Escherichia coli H397]
gi|388393679|gb|EIL55035.1| tRNA modification GTPase TrmE [Escherichia coli KD1]
gi|388419948|gb|EIL79653.1| tRNA modification GTPase TrmE [Escherichia coli HM605]
gi|430873307|gb|ELB96882.1| tRNA modification GTPase mnmE [Escherichia coli KTE4]
gi|430883263|gb|ELC06267.1| tRNA modification GTPase mnmE [Escherichia coli KTE5]
gi|430903515|gb|ELC25252.1| tRNA modification GTPase mnmE [Escherichia coli KTE16]
gi|430904001|gb|ELC25737.1| tRNA modification GTPase mnmE [Escherichia coli KTE15]
gi|430926163|gb|ELC46751.1| tRNA modification GTPase mnmE [Escherichia coli KTE28]
gi|430933010|gb|ELC53428.1| tRNA modification GTPase mnmE [Escherichia coli KTE39]
gi|430950214|gb|ELC69602.1| tRNA modification GTPase mnmE [Escherichia coli KTE187]
gi|430959763|gb|ELC78069.1| tRNA modification GTPase mnmE [Escherichia coli KTE188]
gi|430962879|gb|ELC80725.1| tRNA modification GTPase mnmE [Escherichia coli KTE189]
gi|430970781|gb|ELC87826.1| tRNA modification GTPase mnmE [Escherichia coli KTE191]
gi|430979387|gb|ELC96172.1| tRNA modification GTPase mnmE [Escherichia coli KTE201]
gi|430995519|gb|ELD11812.1| tRNA modification GTPase mnmE [Escherichia coli KTE206]
gi|431020864|gb|ELD34199.1| tRNA modification GTPase mnmE [Escherichia coli KTE214]
gi|431035432|gb|ELD46822.1| tRNA modification GTPase mnmE [Escherichia coli KTE220]
gi|431038803|gb|ELD49699.1| tRNA modification GTPase mnmE [Escherichia coli KTE224]
gi|431047538|gb|ELD57536.1| tRNA modification GTPase mnmE [Escherichia coli KTE230]
gi|431080923|gb|ELD87709.1| tRNA modification GTPase mnmE [Escherichia coli KTE47]
gi|431097160|gb|ELE02609.1| tRNA modification GTPase mnmE [Escherichia coli KTE53]
gi|431104734|gb|ELE09107.1| tRNA modification GTPase mnmE [Escherichia coli KTE55]
gi|431117684|gb|ELE20912.1| tRNA modification GTPase mnmE [Escherichia coli KTE58]
gi|431125834|gb|ELE28231.1| tRNA modification GTPase mnmE [Escherichia coli KTE60]
gi|431127851|gb|ELE30145.1| tRNA modification GTPase mnmE [Escherichia coli KTE62]
gi|431144180|gb|ELE45887.1| tRNA modification GTPase mnmE [Escherichia coli KTE67]
gi|431146744|gb|ELE48180.1| tRNA modification GTPase mnmE [Escherichia coli KTE72]
gi|431178363|gb|ELE78276.1| tRNA modification GTPase mnmE [Escherichia coli KTE86]
gi|431186492|gb|ELE86032.1| tRNA modification GTPase mnmE [Escherichia coli KTE87]
gi|431188066|gb|ELE87565.1| tRNA modification GTPase mnmE [Escherichia coli KTE93]
gi|431240345|gb|ELF34807.1| tRNA modification GTPase mnmE [Escherichia coli KTE169]
gi|431251835|gb|ELF45841.1| tRNA modification GTPase mnmE [Escherichia coli KTE8]
gi|431289594|gb|ELF80335.1| tRNA modification GTPase mnmE [Escherichia coli KTE43]
gi|431299564|gb|ELF89135.1| tRNA modification GTPase mnmE [Escherichia coli KTE22]
gi|431324594|gb|ELG12046.1| tRNA modification GTPase mnmE [Escherichia coli KTE59]
gi|431326028|gb|ELG13391.1| tRNA modification GTPase mnmE [Escherichia coli KTE63]
gi|431334914|gb|ELG22058.1| tRNA modification GTPase mnmE [Escherichia coli KTE65]
gi|431345434|gb|ELG32355.1| tRNA modification GTPase mnmE [Escherichia coli KTE84]
gi|431365390|gb|ELG51904.1| tRNA modification GTPase mnmE [Escherichia coli KTE118]
gi|431377583|gb|ELG62709.1| tRNA modification GTPase mnmE [Escherichia coli KTE123]
gi|431392382|gb|ELG75981.1| tRNA modification GTPase mnmE [Escherichia coli KTE141]
gi|431427322|gb|ELH09363.1| tRNA modification GTPase mnmE [Escherichia coli KTE194]
gi|431460420|gb|ELH40709.1| tRNA modification GTPase mnmE [Escherichia coli KTE183]
gi|431479339|gb|ELH59082.1| tRNA modification GTPase mnmE [Escherichia coli KTE207]
gi|431485610|gb|ELH65269.1| tRNA modification GTPase mnmE [Escherichia coli KTE209]
gi|431494323|gb|ELH73912.1| tRNA modification GTPase mnmE [Escherichia coli KTE215]
gi|431502195|gb|ELH81087.1| tRNA modification GTPase mnmE [Escherichia coli KTE218]
gi|431504371|gb|ELH82997.1| tRNA modification GTPase mnmE [Escherichia coli KTE223]
gi|431521303|gb|ELH98551.1| tRNA modification GTPase mnmE [Escherichia coli KTE229]
gi|431521915|gb|ELH99151.1| tRNA modification GTPase mnmE [Escherichia coli KTE227]
gi|431526341|gb|ELI03097.1| tRNA modification GTPase mnmE [Escherichia coli KTE104]
gi|431530721|gb|ELI07399.1| tRNA modification GTPase mnmE [Escherichia coli KTE106]
gi|431548062|gb|ELI22350.1| tRNA modification GTPase mnmE [Escherichia coli KTE113]
gi|431565849|gb|ELI38924.1| tRNA modification GTPase mnmE [Escherichia coli KTE124]
gi|431593966|gb|ELI64257.1| tRNA modification GTPase mnmE [Escherichia coli KTE131]
gi|431598050|gb|ELI67951.1| tRNA modification GTPase mnmE [Escherichia coli KTE133]
gi|431600735|gb|ELI70402.1| tRNA modification GTPase mnmE [Escherichia coli KTE137]
gi|431616080|gb|ELI85148.1| tRNA modification GTPase mnmE [Escherichia coli KTE145]
gi|431630611|gb|ELI98940.1| tRNA modification GTPase mnmE [Escherichia coli KTE153]
gi|431640229|gb|ELJ07990.1| tRNA modification GTPase mnmE [Escherichia coli KTE160]
gi|431655850|gb|ELJ22880.1| tRNA modification GTPase mnmE [Escherichia coli KTE167]
gi|431657541|gb|ELJ24505.1| tRNA modification GTPase mnmE [Escherichia coli KTE168]
gi|431667170|gb|ELJ33762.1| tRNA modification GTPase mnmE [Escherichia coli KTE174]
gi|431670059|gb|ELJ36418.1| tRNA modification GTPase mnmE [Escherichia coli KTE176]
gi|431683633|gb|ELJ49262.1| tRNA modification GTPase mnmE [Escherichia coli KTE179]
gi|431684057|gb|ELJ49678.1| tRNA modification GTPase mnmE [Escherichia coli KTE180]
gi|431702165|gb|ELJ66966.1| tRNA modification GTPase mnmE [Escherichia coli KTE88]
gi|431717017|gb|ELJ81120.1| tRNA modification GTPase mnmE [Escherichia coli KTE94]
gi|431728149|gb|ELJ91870.1| tRNA modification GTPase mnmE [Escherichia coli KTE97]
gi|431731423|gb|ELJ94924.1| tRNA modification GTPase mnmE [Escherichia coli KTE99]
gi|432349475|gb|ELL43902.1| tRNA modification GTPase TrmE [Escherichia coli J96]
gi|441713440|emb|CCQ06551.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
Nissle 1917]
Length = 454
Score = 357 bits (915), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 284/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +
Sbjct: 1 MSDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNNVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + + I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|300984421|ref|ZP_07176985.1| tRNA modification GTPase TrmE, partial [Escherichia coli MS 45-1]
gi|300408377|gb|EFJ91915.1| tRNA modification GTPase TrmE [Escherichia coli MS 45-1]
Length = 479
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 194/475 (40%), Positives = 285/475 (60%), Gaps = 23/475 (4%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
+++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F +
Sbjct: 25 IMSDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKLPK---PRYADYLPFKDADG 81
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++
Sbjct: 82 SVLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSE 138
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 139 RAFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAA 198
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 199 IDFPDEEIDF-LSDGKIEAQLNNVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSL 257
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IG
Sbjct: 258 LNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIG 310
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
IER W E++ +D ++++ D D + + I P +P+ V NK D +G
Sbjct: 311 IERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG 370
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
++ N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 371 MSEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQ 429
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 430 QGKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 479
>gi|86147167|ref|ZP_01065483.1| tRNA modification GTPase [Vibrio sp. MED222]
gi|85835051|gb|EAQ53193.1| tRNA modification GTPase [Vibrio sp. MED222]
Length = 453
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 200/469 (42%), Positives = 281/469 (59%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG ++ + T K LKPR+A Y F N +D+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGPQ---AAQVALEVTGKVLKPRYAEYLPFKSHNGTELDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF PHS+TGEDV+EL GHGGP+++ ML+ L I G+R A PGEF++RAFLN+K
Sbjct: 63 ALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILSIS---GVRAARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FSK IN L+D LI LR +E + DFPEE
Sbjct: 120 MDLTQAEAIADLIDASSEEAAKSALQSLQGEFSKRINTLVDSLIYLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + Q+ + +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LADGKVSTDLQAIIDNLEAVRQEANQGSIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG +++ +EVEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVEKIGIERAWEE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQKNINYKNN 363
+ +D ++++ D TD K I +F P NI + + NK D + + I + N+
Sbjct: 292 IAQADRVLFMVDGTTTDATD-PKDIWPDFVDRLPNNIGMTVIRNKADQTSEELGICHVND 350
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA G++ LR+ L D + E ++AR RH+ +L A+ +L I
Sbjct: 351 PTLIRLSAKTGQGVDALRSHLKDCMGFAGGHEGG-FMARRRHLDALERASEHLD-----I 404
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 405 GQQQLEGYMAGEILAEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|145640677|ref|ZP_01796260.1| tRNA modification GTPase [Haemophilus influenzae R3021]
gi|145274603|gb|EDK14466.1| tRNA modification GTPase [Haemophilus influenzae 22.4-21]
Length = 452
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 196/468 (41%), Positives = 283/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + + + K K PR A Y F + I+D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPLATKVAQAILGKCPK---PRMADYLPFKDADGTILDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK+P+S+TGEDV+EL GHGG ++L +LL L+I G+RLA PGEF+++AFLN+K
Sbjct: 62 ALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQID---GIRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E A +SA+ SL G+FSK +N L+D +I LRT +E S DFP+E
Sbjct: 119 LDLAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE 178
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + N L I +L + + K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 179 IDFLADGKIEAN-LRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGR 237
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D +EVE+IGI R W E
Sbjct: 238 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT-------DEVERIGISRAWTE 290
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D II + D+ + D K + + P +PV V NKID +G Q + + +
Sbjct: 291 IEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGY 350
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G+ LLR L + QT +LAR RH+ +L++A +L + +
Sbjct: 351 QIISLSAQTHDGVQLLREHLKQAM-GFQTGMEGGFLARRRHLDALDKAAEHLQIGLVQLT 409
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AE+LR LS I G+ T++DLL +IFS FCIGK
Sbjct: 410 EFHAG-----ELLAEELRLVQSYLSEITGQFTSDDLLGSIFSSFCIGK 452
>gi|381402165|ref|ZP_09927043.1| tRNA modification GTPase TrmE [Kingella kingae PYKK081]
gi|380832853|gb|EIC12743.1| tRNA modification GTPase TrmE [Kingella kingae PYKK081]
Length = 459
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 207/467 (44%), Positives = 283/467 (60%), Gaps = 36/467 (7%)
Query: 16 GRGGVGIIRLSGKNLWSIVE-IVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAP 74
GRGGVG+IR+SGK+L + I KT K PR A Y+ F + N ID GL++YF AP
Sbjct: 19 GRGGVGVIRISGKDLLPFAQHITGGKTPK---PRTALYTDFVDQYGNAIDNGLLLYFAAP 75
Query: 75 HSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVE 134
S+TGEDVIEL GHGG I+L MLL CLE+G R+A GEFTKRAFLNNKLDL Q E
Sbjct: 76 ASFTGEDVIELQGHGGQIVLQMLLQRCLELGA----RIAEAGEFTKRAFLNNKLDLAQAE 131
Query: 135 AIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELILNK 194
++ DLI+AS+++AA+ A+ SL G FS+ I+ L+D LI LR L+E + DFPEE + L
Sbjct: 132 SVADLIDASSQAAARMAVRSLKGAFSQHIHSLVDDLITLRMLVEATLDFPEEEIDF-LEA 190
Query: 195 NDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTS 254
D +L +++ +L ++QQ + A++ G+NVVL+G PNVGKSSL N+L G DVAIVT+
Sbjct: 191 ADAKGKLAQLQAQLSTVLQQAGQGAILHEGMNVVLVGAPNVGKSSLLNALAGDDVAIVTN 250
Query: 255 IAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDII 314
IAGTTRD + + I ++ ITDTAG +++ + VEKIGIER+ ++N+D+
Sbjct: 251 IAGTTRDTVREQITLDGVPIHITDTAG-------LRQTDDVVEKIGIERSEKAVQNADVA 303
Query: 315 IYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKR 374
+ + D + + I+ P ++ I V NKID ++ + N A +LS +
Sbjct: 304 LILIDP-AEGINPTTQAILDKLPTSLQRIEVHNKIDL--RDESASLHNESAGCFLSGADV 360
Query: 375 I---------GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQ 425
+ G++LL+ TLLD I Q +LAR RHIH+L A L A N
Sbjct: 361 LIKLSAKTGAGLDLLKQTLLDAI-GWQGESEGLFLARTRHIHALQAAQVELENAALCSN- 418
Query: 426 SEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
LEL+AE LR + I G+ T +DLL IFS+FCIGK
Sbjct: 419 ------NQLELLAEHLRLAQVACNEITGEFTADDLLGVIFSRFCIGK 459
>gi|309751333|gb|ADO81317.1| tRNA modification GTPase mnmE [Haemophilus influenzae R2866]
Length = 461
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 196/468 (41%), Positives = 283/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + + + K K PR A Y F + I+D+G+
Sbjct: 14 IVAQATAPGRGGIGILRVSGPLATKVAQAILGKCPK---PRMADYLPFKDADGTILDQGI 70
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK+P+S+TGEDV+EL GHGG ++L +LL L+I G+RLA PGEF+++AFLN+K
Sbjct: 71 ALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQID---GIRLARPGEFSEQAFLNDK 127
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E A +SA+ SL G+FSK +N L+D +I LRT +E S DFP+E
Sbjct: 128 LDLAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNALVDSVIYLRTYVEASIDFPDEE 187
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + N L I +L + + K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 188 IDFLADGKIEAN-LRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGH 246
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG ++ +EVE+IGI R W E
Sbjct: 247 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LRNATDEVERIGISRAWTE 299
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D II + D+ + D K + + P +PV V NKID +G Q + + +
Sbjct: 300 IEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGY 359
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G+ LLR L + QT +LAR RH+ +L++A +L + +
Sbjct: 360 QIISLSAQTHDGVQLLREHLKQAM-GFQTGMEGGFLARRRHLDALDKAAEHLQIGLVQLT 418
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 419 EFHAG-----ELLAEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 461
>gi|261250646|ref|ZP_05943221.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio orientalis
CIP 102891 = ATCC 33934]
gi|417954332|ref|ZP_12597369.1| tRNA modification GTPase TrmE [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|260939215|gb|EEX95202.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio orientalis
CIP 102891 = ATCC 33934]
gi|342815600|gb|EGU50515.1| tRNA modification GTPase TrmE [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 453
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 199/469 (42%), Positives = 282/469 (60%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG ++ + T K+L+PR+A Y F ++ +D+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGP---LAAKVALEVTGKELRPRYAEYLPFTAEDGAQLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF PHS+TGEDV+EL GHGGP+++ ML+ L+I G+R A PGEF++RAFLN+K
Sbjct: 63 ALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILKIS---GIRTARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AAKSA+ SL G FS IN L++ LI+LR +E + DFPEE
Sbjct: 120 LDLAQAEAIADLIDASSEEAAKSALQSLQGAFSGRINTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + Q+ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LADGKVAADLQTIIDNLAAVRQEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + +EVEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVEKIGIERAWDE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQKNINYKNN 363
+ +D ++++ D TD K+I +F P NI + + NK D +G I + N+
Sbjct: 292 ITQADRVLFMVDGTTTDATD-PKEIWPDFVDRLPNNIGMTVIRNKADQTGEDLGICHVND 350
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA G+ LR L + + E ++AR RH+ +L A+ +L I
Sbjct: 351 PTLIRLSAKTGEGVEALRTHLKECMGFAGGHEGG-FMARRRHLEALESASDHLD-----I 404
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + LS I G+ +++DLL IF+ FCIGK
Sbjct: 405 GQQQLEGYMAGEILAEELRIAQQHLSEITGEFSSDDLLGRIFTSFCIGK 453
>gi|432468037|ref|ZP_19710114.1| tRNA modification GTPase mnmE [Escherichia coli KTE205]
gi|432585247|ref|ZP_19821638.1| tRNA modification GTPase mnmE [Escherichia coli KTE57]
gi|433074982|ref|ZP_20261619.1| tRNA modification GTPase mnmE [Escherichia coli KTE129]
gi|433122336|ref|ZP_20307991.1| tRNA modification GTPase mnmE [Escherichia coli KTE157]
gi|433185444|ref|ZP_20369678.1| tRNA modification GTPase mnmE [Escherichia coli KTE85]
gi|430990979|gb|ELD07399.1| tRNA modification GTPase mnmE [Escherichia coli KTE205]
gi|431115147|gb|ELE18674.1| tRNA modification GTPase mnmE [Escherichia coli KTE57]
gi|431583497|gb|ELI55502.1| tRNA modification GTPase mnmE [Escherichia coli KTE129]
gi|431638854|gb|ELJ06732.1| tRNA modification GTPase mnmE [Escherichia coli KTE157]
gi|431702414|gb|ELJ67214.1| tRNA modification GTPase mnmE [Escherichia coli KTE85]
Length = 454
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 284/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +
Sbjct: 1 MSDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNNVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + + I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|424818491|ref|ZP_18243642.1| tRNA modification GTPase TrmE [Escherichia fergusonii ECD227]
gi|325499511|gb|EGC97370.1| tRNA modification GTPase TrmE [Escherichia fergusonii ECD227]
Length = 454
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 283/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F +
Sbjct: 1 MSDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKLPK---PRYADYLPFKDADGR 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + + I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|301047527|ref|ZP_07194602.1| tRNA modification GTPase TrmE, partial [Escherichia coli MS 185-1]
gi|422364426|ref|ZP_16444944.1| tRNA modification GTPase TrmE, partial [Escherichia coli MS 153-1]
gi|300300576|gb|EFJ56961.1| tRNA modification GTPase TrmE [Escherichia coli MS 185-1]
gi|315292850|gb|EFU52202.1| tRNA modification GTPase TrmE [Escherichia coli MS 153-1]
Length = 477
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 194/475 (40%), Positives = 285/475 (60%), Gaps = 23/475 (4%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
+++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F +
Sbjct: 23 IMSDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKLPK---PRYADYLPFKDADG 79
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++
Sbjct: 80 SVLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSE 136
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 137 RAFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAA 196
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 197 IDFPDEEIDF-LSDGKIEAQLNNVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSL 255
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IG
Sbjct: 256 LNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIG 308
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
IER W E++ +D ++++ D D + + I P +P+ V NK D +G
Sbjct: 309 IERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG 368
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
++ N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 369 MSEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQ 427
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 428 QGKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 477
>gi|300947531|ref|ZP_07161709.1| tRNA modification GTPase TrmE, partial [Escherichia coli MS 116-1]
gi|300452880|gb|EFK16500.1| tRNA modification GTPase TrmE [Escherichia coli MS 116-1]
Length = 460
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 194/475 (40%), Positives = 285/475 (60%), Gaps = 23/475 (4%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
+++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F +
Sbjct: 6 IMSDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKLPK---PRYADYLPFKDADG 62
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++
Sbjct: 63 SVLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSE 119
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 120 RAFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAA 179
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 180 IDFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSL 238
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IG
Sbjct: 239 LNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIG 291
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
IER W E++ +D ++++ D D + + I P +P+ V NK D +G
Sbjct: 292 IERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG 351
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
++ N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 352 MSEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQ 410
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 411 QGKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 460
>gi|429094666|ref|ZP_19157192.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Cronobacter
dublinensis 1210]
gi|426740237|emb|CCJ83305.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Cronobacter
dublinensis 1210]
Length = 454
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 192/474 (40%), Positives = 284/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG+ + + V K K R+A Y F +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRVSGQQARDVAQAVLGKLPKA---RYADYLPFKDADGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D TD + I P +P+ V NK D +G Q I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDATDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + I LSA G+++LRN L + ++E +LAR RH+ +L A +L
Sbjct: 347 SEVNGHSLIRLSARTNEGVDVLRNHLKQSMGFDTSMEGG-FLARRRHLQALETAANHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|300956287|ref|ZP_07168590.1| tRNA modification GTPase TrmE, partial [Escherichia coli MS 175-1]
gi|300316885|gb|EFJ66669.1| tRNA modification GTPase TrmE [Escherichia coli MS 175-1]
Length = 462
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 194/475 (40%), Positives = 285/475 (60%), Gaps = 23/475 (4%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
+++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F +
Sbjct: 8 IMSDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKLPK---PRYADYLPFKDADG 64
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++
Sbjct: 65 SVLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSE 121
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 122 RAFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAA 181
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 182 IDFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSL 240
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IG
Sbjct: 241 LNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIG 293
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
IER W E++ +D ++++ D D + + I P +P+ V NK D +G
Sbjct: 294 IERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG 353
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
++ N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 354 MSEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQ 412
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 413 QGKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 462
>gi|88798543|ref|ZP_01114127.1| tRNA modification GTPase [Reinekea blandensis MED297]
gi|88778643|gb|EAR09834.1| tRNA modification GTPase [Reinekea sp. MED297]
Length = 455
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 195/476 (40%), Positives = 283/476 (59%), Gaps = 25/476 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFF-CKN 59
M+ N I IATPPGRGGVGI+R+SGK ++ E K KK+ +PR+A Y F+
Sbjct: 1 MIASNDTITAIATPPGRGGVGIVRVSGKAATAVAE---KILKKRPEPRYAHYGPFYHPTQ 57
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFT 119
++ID+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL + S+G RLA PGEF+
Sbjct: 58 GDVIDEGIALFFPGPNSFTGEDVLELQGHGGPVILELLLEAVC----SLGCRLARPGEFS 113
Query: 120 KRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEF 179
+RAFLN+K+DL Q EAI DLI+AS+ AA+SA+ SL G FS ++ L+++LI LR +E
Sbjct: 114 ERAFLNDKIDLTQAEAIADLIDASSREAARSAVRSLQGDFSNAVHQLVEQLIQLRIYVEA 173
Query: 180 SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
+ DFPEE + L+ +L ++ +L + + +L+R+G+ VV+ G+PN GKSS
Sbjct: 174 AIDFPEEEIDF-LSDGKVETDLRQVMSQLADVQATANQGSLMRDGMTVVIAGRPNAGKSS 232
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + VE+I
Sbjct: 233 LLNALSGQERAIVTDIAGTTRDVLKEHIHIDGMPLHIIDTAGLRDAP-------DAVERI 285
Query: 300 GIERTWVELKNSDIIIYVQDARYDKHTDFD---KKIIKNFPMNIPVIYVWNKIDYSGHQK 356
G+ER W E++ +D I+ + DA D + + P + + NKID +G
Sbjct: 286 GVERAWAEIETADRILLMVDATDTDAVDPETIWPDFMHRLPERAQLTVIRNKIDQTGEAA 345
Query: 357 NINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYL 416
+N + + I LSA R G+N LR+ L L+ ES ++AR+RH+ +L A L
Sbjct: 346 GLNMDSAVPVIRLSAQNRAGVNHLRDHLKQLMGFEGNHESG-FIARKRHLDALLRAAEAL 404
Query: 417 SCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AEDLR L+ I G+ + +DLL IFS FCIGK
Sbjct: 405 DNGLAQLLGPAAG-----ELLAEDLRVAQNALNEITGEFSPDDLLGRIFSSFCIGK 455
>gi|290554|gb|AAA62057.1| 50 kD protein [Escherichia coli]
Length = 454
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 283/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +
Sbjct: 1 MSDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLRXXIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + + I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|429088846|ref|ZP_19151578.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Cronobacter
universalis NCTC 9529]
gi|429107525|ref|ZP_19169394.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Cronobacter
malonaticus 681]
gi|426294248|emb|CCJ95507.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Cronobacter
malonaticus 681]
gi|426508649|emb|CCK16690.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Cronobacter
universalis NCTC 9529]
Length = 454
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 191/474 (40%), Positives = 285/474 (60%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG+ + + V K K R+A Y F +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRVSGQQARDVAQAVLGKLPKA---RYADYLPFKDADGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D TD + I P +P+ V NK D +G Q +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDATDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + I LSA G+++LRN L + ++E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHSLIRLSARTNEGVDVLRNHLKQSMGFDTSMEGG-FLARRRHLQALEDAANHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|291615647|ref|YP_003518389.1| TrmE [Pantoea ananatis LMG 20103]
gi|378769292|ref|YP_005197767.1| tRNA modification GTPase TrmE [Pantoea ananatis LMG 5342]
gi|386081362|ref|YP_005994887.1| tRNA modification GTPase TrmE [Pantoea ananatis PA13]
gi|291150677|gb|ADD75261.1| TrmE [Pantoea ananatis LMG 20103]
gi|354990543|gb|AER34667.1| tRNA modification GTPase TrmE [Pantoea ananatis PA13]
gi|365188780|emb|CCF11730.1| tRNA modification GTPase TrmE [Pantoea ananatis LMG 5342]
Length = 454
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 192/474 (40%), Positives = 284/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ + I+ ATPPGRGGVGI+R+SG + + + K K PR+A Y SF + +
Sbjct: 1 MSHSDTIVAQATPPGRGGVGILRISGPRAAEVAQQILGKLPK---PRYADYLSFNDSDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F PHS+TGEDV+EL GHGGP+IL +LL + + GLR+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPHSFTGEDVLELQGHGGPVILDLLLKRIVAL---PGLRIAQPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS IN L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSVRINHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + K+ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEGQLNTVISDLDAVRAEAKQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D T+ + + P +P+ V NK D +G + +
Sbjct: 287 ERAWHEIEQADRVLFMVDGTTTDATEPAEIWPDFVARLPPQLPITVVRNKADITGEARGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N A I LSA G++ LR+ L + +E +LAR RH+ +L A +L
Sbjct: 347 TNANGHALIRLSARTSEGLDTLRDHLKQTMGFADNMEGG-FLARRRHLQALELAATHLEQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+S+ EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 -----GKSQLLGAWAGELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|261868617|ref|YP_003256539.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|415769766|ref|ZP_11484437.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|416108313|ref|ZP_11590988.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|444346742|ref|ZP_21154705.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
gi|261413949|gb|ACX83320.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|348004404|gb|EGY44914.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|348657244|gb|EGY74839.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|443541298|gb|ELT51740.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
Length = 451
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 197/468 (42%), Positives = 281/468 (60%), Gaps = 24/468 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + + V K K PR A Y SF + ++D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPKAIEVAQAVLGKCPK---PRMADYLSFKEADGTVLDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK P+S+TGEDV+EL GHGG ++L +LL L I G+RLA PGEF+++AFLN+K
Sbjct: 62 ALYFKGPNSFTGEDVLELQGHGGQVVLDLLLKRILRIE---GIRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AA+SA+ SL G+FS +N L+D +I LRT +E + DFP+E
Sbjct: 119 LDLAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEE 178
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L L I +L K+ + K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 179 IDF-LADGKIEGHLNDIIAQLDKVRAEAKQGSILREGMKVVIAGRPNAGKSSLLNTLAGR 237
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D +EVE+IGI R W E
Sbjct: 238 EAAIVTDIAGTTRDVLREHIHLDGMPLHIIDTAGLRDAT-------DEVERIGISRAWHE 290
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D I+ + D+ D D K + + P NIP+ + NK D SG + + ++
Sbjct: 291 IEQADRILLMLDS-SDTEQDLAKVRSEFLAKLPNNIPLTIIRNKADLSGEAERLYEEDGY 349
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
+ LSA + G++LLR+ L + QT +LAR RH+ +L A +L +
Sbjct: 350 TVVNLSAKTQQGVDLLRDHLKQAM-GYQTGMEGGFLARRRHLEALELAARHLQMGHVQLT 408
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 409 QFHAG-----ELLAEELRMVQSALSEITGQFTSDDLLTNIFSSFCIGK 451
>gi|240949809|ref|ZP_04754138.1| tRNA modification GTPase TrmE [Actinobacillus minor NM305]
gi|240295726|gb|EER46421.1| tRNA modification GTPase TrmE [Actinobacillus minor NM305]
Length = 452
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 286/474 (60%), Gaps = 35/474 (7%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ ATP GRGGVGI+R+SG + + V K +LKPR A Y F + ++D+G+
Sbjct: 5 IVAQATPIGRGGVGILRVSGPLANEVAKAVVGK---ELKPRLANYLPFMDTDGTVLDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++FKAP+S+TGEDV+EL GHGG +IL +LL L + G+R+A GEF+++AFLN+K
Sbjct: 62 ALFFKAPNSFTGEDVLELQGHGGQVILDLLLKRILAVK---GVRIARAGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AA+SA+ SL G+FS +N L+D +I LRT +E + DFP+E
Sbjct: 119 LDLAQAEAIADLIDATSEQAARSALKSLQGEFSNKVNELVDSVIYLRTYVEAAIDFPDEE 178
Query: 188 QELILNK------NDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
+ + + ND +L ++K + K+ +++R G+ VV+ G+PN GKSSL
Sbjct: 179 IDFLADGKIEAKLNDIITQLANVRK-------EAKQGSILREGMKVVIAGKPNAGKSSLL 231
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT+IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 232 NALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 284
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFD---KKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
+R W E+ +D ++ + D+ + F + + P NIPV + NK+D SG + +
Sbjct: 285 QRAWDEIAQADHVLLMIDSSEQQADVFKTEWAEFLAKLPQNIPVTVIRNKVDLSGESEGL 344
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
++ I LSA ++G++LLR L + + E +LAR RH+ +L A +L
Sbjct: 345 EQQDGFTLIRLSAQTKVGVDLLREHLKQSMGYQSSTEGG-FLARRRHLQALETAAEHLER 403
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ Q EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 404 GHVQLTQFFAG-----ELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 452
>gi|254509080|ref|ZP_05121183.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus 16]
gi|219548013|gb|EED25035.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus 16]
Length = 453
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 200/469 (42%), Positives = 282/469 (60%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG + + V KT L+PR+A Y F ++ + +D+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGPLAEKVAQEVTGKT---LRPRYAEYLPFTSQDGSQLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF PHS+TGEDV+EL GHGGP+++ ML+ L+I G+R A PGEF++RAFLN+K
Sbjct: 63 ALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILQI---PGIRTARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AAKSA+ SL G FS+ I+ L++ LI+LR +E + DFPEE
Sbjct: 120 LDLAQAEAIADLIDASSEEAAKSALQSLQGAFSQRIHTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + Q+ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LADGKVAGDLQAIIDNLSAVRQEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + +EVEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVEKIGIERAWDE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQKNINYKNN 363
+ +D ++++ D TD K+I +F P NI + + NK D +G I + N
Sbjct: 292 IAQADRVLFMVDGTTTDATD-PKEIWPDFVDRLPDNIGMTVIRNKADQTGEDLGICHVNA 350
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA G+ LR+ L + + E ++AR RH+ +L A +L I
Sbjct: 351 PTLIRLSAKTGEGVESLRSHLKECMGFAGGNEGG-FMARRRHLEALERAAEHLD-----I 404
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + LS I G+ +++DLL IFS FCIGK
Sbjct: 405 GQQQLEGYMAGEILAEELRIAQQHLSEITGEFSSDDLLGRIFSSFCIGK 453
>gi|429084015|ref|ZP_19147034.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Cronobacter
condimenti 1330]
gi|426546993|emb|CCJ73075.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Cronobacter
condimenti 1330]
Length = 454
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 191/474 (40%), Positives = 283/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG+ + V K K PR+A Y F +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRVSGQQARDVAHAVLGKLPK---PRYADYLPFKDADGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D TD + I P +P+ V NK D +G Q +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDATDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGM 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + I LSA G+ +LR+ L + ++E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHSLIRLSARTSEGVEVLRSHLKQSMGFDTSMEGG-FLARRRHLQALEDAANHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|429102541|ref|ZP_19164515.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Cronobacter
turicensis 564]
gi|426289190|emb|CCJ90628.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Cronobacter
turicensis 564]
Length = 454
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 192/474 (40%), Positives = 285/474 (60%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG+ + + V K K R+A Y F +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRVSGQQARDVAQAVLGKLPKA---RYADYLPFKDADGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I G+R+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGVRIAKPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D TD + I P +P+ V NK D +G Q +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTNATDPAQIWPDFIARRPAKLPITVVRNKADVTGEQPGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + I LSA G+++LRN L + ++E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHSLIRLSARTSDGVDVLRNHLKQSMGFDTSMEGG-FLARRRHLQALEDAANHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|74314021|ref|YP_312440.1| tRNA modification GTPase TrmE [Shigella sonnei Ss046]
gi|414578400|ref|ZP_11435567.1| tRNA modification GTPase TrmE [Shigella sonnei 3233-85]
gi|415810950|ref|ZP_11503300.1| tRNA modification GTPase TrmE [Escherichia coli LT-68]
gi|417125691|ref|ZP_11973652.1| tRNA modification GTPase TrmE [Escherichia coli 97.0246]
gi|418269181|ref|ZP_12887715.1| tRNA modification GTPase TrmE [Shigella sonnei str. Moseley]
gi|420360870|ref|ZP_14861820.1| tRNA modification GTPase TrmE [Shigella sonnei 3226-85]
gi|420365469|ref|ZP_14866333.1| tRNA modification GTPase TrmE [Shigella sonnei 4822-66]
gi|123615900|sp|Q3YWA7.1|MNME_SHISS RecName: Full=tRNA modification GTPase MnmE
gi|73857498|gb|AAZ90205.1| GTP-binding protein in thiophene and furan oxidation [Shigella
sonnei Ss046]
gi|323173325|gb|EFZ58954.1| tRNA modification GTPase TrmE [Escherichia coli LT-68]
gi|386145690|gb|EIG92147.1| tRNA modification GTPase TrmE [Escherichia coli 97.0246]
gi|391278260|gb|EIQ36976.1| tRNA modification GTPase TrmE [Shigella sonnei 3226-85]
gi|391281381|gb|EIQ40031.1| tRNA modification GTPase TrmE [Shigella sonnei 3233-85]
gi|391292008|gb|EIQ50363.1| tRNA modification GTPase TrmE [Shigella sonnei 4822-66]
gi|397896042|gb|EJL12466.1| tRNA modification GTPase TrmE [Shigella sonnei str. Moseley]
Length = 454
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 283/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +
Sbjct: 1 MSDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + + I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N A I LSA G+ +LRN L + +E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHALIRLSARTGEGVEVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|157163187|ref|YP_001460505.1| tRNA modification GTPase TrmE [Escherichia coli HS]
gi|194435686|ref|ZP_03067789.1| tRNA modification GTPase TrmE [Escherichia coli 101-1]
gi|218697429|ref|YP_002405096.1| tRNA modification GTPase TrmE [Escherichia coli 55989]
gi|251786973|ref|YP_003001277.1| GTP-binding protein with a role in modification of tRNA, subunit of
complex involved in modification of tRNA [Escherichia
coli BL21(DE3)]
gi|253775659|ref|YP_003038490.1| tRNA modification GTPase TrmE [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254163658|ref|YP_003046766.1| tRNA modification GTPase TrmE [Escherichia coli B str. REL606]
gi|254290408|ref|YP_003056156.1| tRNA modification GTPase [Escherichia coli BL21(DE3)]
gi|297520056|ref|ZP_06938442.1| tRNA modification GTPase TrmE [Escherichia coli OP50]
gi|307313225|ref|ZP_07592850.1| tRNA modification GTPase TrmE [Escherichia coli W]
gi|309795744|ref|ZP_07690159.1| tRNA modification GTPase TrmE [Escherichia coli MS 145-7]
gi|312972002|ref|ZP_07786176.1| tRNA modification GTPase TrmE [Escherichia coli 1827-70]
gi|331655368|ref|ZP_08356367.1| tRNA modification GTPase TrmE [Escherichia coli M718]
gi|331670551|ref|ZP_08371390.1| tRNA modification GTPase TrmE [Escherichia coli TA271]
gi|378715365|ref|YP_005280258.1| tRNA modification GTPase TrmE [Escherichia coli KO11FL]
gi|386611095|ref|YP_006126581.1| GTPase [Escherichia coli W]
gi|386699215|ref|YP_006163052.1| tRNA modification GTPase MnmE [Escherichia coli KO11FL]
gi|386711623|ref|YP_006175344.1| tRNA modification GTPase MnmE [Escherichia coli W]
gi|407466716|ref|YP_006786842.1| tRNA modification GTPase TrmE [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407484557|ref|YP_006781707.1| tRNA modification GTPase TrmE [Escherichia coli O104:H4 str.
2011C-3493]
gi|410485105|ref|YP_006772651.1| tRNA modification GTPase TrmE [Escherichia coli O104:H4 str.
2009EL-2050]
gi|416342015|ref|ZP_11676381.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
EC4100B]
gi|417223421|ref|ZP_12026861.1| tRNA modification GTPase TrmE [Escherichia coli 96.154]
gi|417245978|ref|ZP_12039474.1| tRNA modification GTPase TrmE [Escherichia coli 9.0111]
gi|417270005|ref|ZP_12057365.1| tRNA modification GTPase TrmE [Escherichia coli 3.3884]
gi|417604617|ref|ZP_12255179.1| tRNA modification GTPase TrmE [Escherichia coli STEC_94C]
gi|417807390|ref|ZP_12454320.1| tRNA modification GTPase TrmE [Escherichia coli O104:H4 str.
LB226692]
gi|417835132|ref|ZP_12481572.1| tRNA modification GTPase TrmE [Escherichia coli O104:H4 str.
01-09591]
gi|417866333|ref|ZP_12511375.1| hypothetical protein C22711_3263 [Escherichia coli O104:H4 str.
C227-11]
gi|419280543|ref|ZP_13822780.1| tRNA modification GTPase TrmE [Escherichia coli DEC10E]
gi|419347490|ref|ZP_13888857.1| tRNA modification GTPase TrmE [Escherichia coli DEC13A]
gi|419351952|ref|ZP_13893279.1| tRNA modification GTPase TrmE [Escherichia coli DEC13B]
gi|419357422|ref|ZP_13898668.1| tRNA modification GTPase TrmE [Escherichia coli DEC13C]
gi|419362397|ref|ZP_13903603.1| tRNA modification GTPase TrmE [Escherichia coli DEC13D]
gi|419367403|ref|ZP_13908552.1| tRNA modification GTPase TrmE [Escherichia coli DEC13E]
gi|419377835|ref|ZP_13918850.1| tRNA modification GTPase TrmE [Escherichia coli DEC14B]
gi|419383228|ref|ZP_13924169.1| tRNA modification GTPase TrmE [Escherichia coli DEC14C]
gi|419388473|ref|ZP_13929338.1| tRNA modification GTPase TrmE [Escherichia coli DEC14D]
gi|419804165|ref|ZP_14329327.1| tRNA modification GTPase TrmE [Escherichia coli AI27]
gi|422773650|ref|ZP_16827333.1| tRNA modification GTPase TrmE [Escherichia coli E482]
gi|422788575|ref|ZP_16841311.1| tRNA modification GTPase TrmE [Escherichia coli H489]
gi|422792318|ref|ZP_16845019.1| tRNA modification GTPase TrmE [Escherichia coli TA007]
gi|422989978|ref|ZP_16980750.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
C227-11]
gi|422996876|ref|ZP_16987638.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
C236-11]
gi|423001969|ref|ZP_16992722.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
09-7901]
gi|423005625|ref|ZP_16996370.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
04-8351]
gi|423012187|ref|ZP_17002919.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-3677]
gi|423021413|ref|ZP_17012120.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-4404]
gi|423026575|ref|ZP_17017270.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-4522]
gi|423032403|ref|ZP_17023089.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-4623]
gi|423035276|ref|ZP_17025954.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-4632 C1]
gi|423040398|ref|ZP_17031067.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-4632 C2]
gi|423047083|ref|ZP_17037742.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-4632 C3]
gi|423055622|ref|ZP_17044428.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-4632 C4]
gi|423057625|ref|ZP_17046424.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-4632 C5]
gi|423708021|ref|ZP_17682401.1| tRNA modification GTPase mnmE [Escherichia coli B799]
gi|425424722|ref|ZP_18805870.1| tRNA modification GTPase TrmE [Escherichia coli 0.1288]
gi|429721458|ref|ZP_19256373.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429773351|ref|ZP_19305366.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-02030]
gi|429778716|ref|ZP_19310682.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-02033-1]
gi|429782551|ref|ZP_19314476.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-02092]
gi|429787944|ref|ZP_19319831.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-02093]
gi|429793763|ref|ZP_19325605.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-02281]
gi|429800343|ref|ZP_19332132.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-02318]
gi|429803955|ref|ZP_19335712.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-02913]
gi|429808603|ref|ZP_19340319.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-03439]
gi|429814302|ref|ZP_19345973.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-04080]
gi|429819505|ref|ZP_19351135.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-03943]
gi|429905825|ref|ZP_19371801.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429909958|ref|ZP_19375920.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec11-9941]
gi|429915858|ref|ZP_19381804.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429920906|ref|ZP_19386833.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429926714|ref|ZP_19392625.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429930646|ref|ZP_19396545.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429937188|ref|ZP_19403073.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429942866|ref|ZP_19408738.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429945545|ref|ZP_19411405.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429953108|ref|ZP_19418953.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429956455|ref|ZP_19422285.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec12-0466]
gi|432378943|ref|ZP_19621924.1| tRNA modification GTPase mnmE [Escherichia coli KTE12]
gi|432528569|ref|ZP_19765640.1| tRNA modification GTPase mnmE [Escherichia coli KTE233]
gi|432767142|ref|ZP_20001555.1| tRNA modification GTPase mnmE [Escherichia coli KTE48]
gi|432811458|ref|ZP_20045314.1| tRNA modification GTPase mnmE [Escherichia coli KTE101]
gi|432836705|ref|ZP_20070234.1| tRNA modification GTPase mnmE [Escherichia coli KTE136]
gi|442596189|ref|ZP_21014009.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
O5:K4(L):H4 str. ATCC 23502]
gi|166991108|sp|A8A6G8.1|MNME_ECOHS RecName: Full=tRNA modification GTPase MnmE
gi|254811477|sp|B7L851.1|MNME_ECO55 RecName: Full=tRNA modification GTPase MnmE
gi|157068867|gb|ABV08122.1| tRNA modification GTPase TrmE [Escherichia coli HS]
gi|194425229|gb|EDX41213.1| tRNA modification GTPase TrmE [Escherichia coli 101-1]
gi|218354161|emb|CAV00765.1| GTPase [Escherichia coli 55989]
gi|242379246|emb|CAQ34051.1| GTP-binding protein with a role in modification of tRNA, subunit of
complex involved in modification of tRNA [Escherichia
coli BL21(DE3)]
gi|253326703|gb|ACT31305.1| tRNA modification GTPase TrmE [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253975559|gb|ACT41230.1| tRNA modification GTPase [Escherichia coli B str. REL606]
gi|253979715|gb|ACT45385.1| tRNA modification GTPase [Escherichia coli BL21(DE3)]
gi|306906908|gb|EFN37417.1| tRNA modification GTPase TrmE [Escherichia coli W]
gi|308120623|gb|EFO57885.1| tRNA modification GTPase TrmE [Escherichia coli MS 145-7]
gi|310334379|gb|EFQ00584.1| tRNA modification GTPase TrmE [Escherichia coli 1827-70]
gi|315063012|gb|ADT77339.1| GTPase [Escherichia coli W]
gi|320201266|gb|EFW75847.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
EC4100B]
gi|323380926|gb|ADX53194.1| tRNA modification GTPase TrmE [Escherichia coli KO11FL]
gi|323939230|gb|EGB35443.1| tRNA modification GTPase TrmE [Escherichia coli E482]
gi|323959772|gb|EGB55422.1| tRNA modification GTPase TrmE [Escherichia coli H489]
gi|323971184|gb|EGB66430.1| tRNA modification GTPase TrmE [Escherichia coli TA007]
gi|331047383|gb|EGI19461.1| tRNA modification GTPase TrmE [Escherichia coli M718]
gi|331062613|gb|EGI34533.1| tRNA modification GTPase TrmE [Escherichia coli TA271]
gi|340732361|gb|EGR61499.1| tRNA modification GTPase TrmE [Escherichia coli O104:H4 str.
01-09591]
gi|340738118|gb|EGR72369.1| tRNA modification GTPase TrmE [Escherichia coli O104:H4 str.
LB226692]
gi|341919622|gb|EGT69233.1| hypothetical protein C22711_3263 [Escherichia coli O104:H4 str.
C227-11]
gi|345347137|gb|EGW79451.1| tRNA modification GTPase TrmE [Escherichia coli STEC_94C]
gi|354857493|gb|EHF17947.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
C236-11]
gi|354861045|gb|EHF21485.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
C227-11]
gi|354863511|gb|EHF23944.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
04-8351]
gi|354871548|gb|EHF31946.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
09-7901]
gi|354876302|gb|EHF36663.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-3677]
gi|354885429|gb|EHF45727.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-4404]
gi|354889247|gb|EHF49499.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-4522]
gi|354892590|gb|EHF52798.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-4623]
gi|354904667|gb|EHF64757.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-4632 C1]
gi|354908455|gb|EHF68510.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-4632 C2]
gi|354910356|gb|EHF70383.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-4632 C3]
gi|354912445|gb|EHF72445.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-4632 C4]
gi|354920616|gb|EHF80549.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-4632 C5]
gi|378123645|gb|EHW85062.1| tRNA modification GTPase TrmE [Escherichia coli DEC10E]
gi|378182634|gb|EHX43284.1| tRNA modification GTPase TrmE [Escherichia coli DEC13A]
gi|378195852|gb|EHX56343.1| tRNA modification GTPase TrmE [Escherichia coli DEC13B]
gi|378196130|gb|EHX56620.1| tRNA modification GTPase TrmE [Escherichia coli DEC13C]
gi|378198969|gb|EHX59438.1| tRNA modification GTPase TrmE [Escherichia coli DEC13D]
gi|378210060|gb|EHX70427.1| tRNA modification GTPase TrmE [Escherichia coli DEC13E]
gi|378214932|gb|EHX75233.1| tRNA modification GTPase TrmE [Escherichia coli DEC14B]
gi|378224132|gb|EHX84337.1| tRNA modification GTPase TrmE [Escherichia coli DEC14C]
gi|378228114|gb|EHX88280.1| tRNA modification GTPase TrmE [Escherichia coli DEC14D]
gi|383390742|gb|AFH15700.1| tRNA modification GTPase MnmE [Escherichia coli KO11FL]
gi|383407315|gb|AFH13558.1| tRNA modification GTPase MnmE [Escherichia coli W]
gi|384472837|gb|EIE56886.1| tRNA modification GTPase TrmE [Escherichia coli AI27]
gi|385708934|gb|EIG45936.1| tRNA modification GTPase mnmE [Escherichia coli B799]
gi|386203223|gb|EII02214.1| tRNA modification GTPase TrmE [Escherichia coli 96.154]
gi|386210163|gb|EII20644.1| tRNA modification GTPase TrmE [Escherichia coli 9.0111]
gi|386228810|gb|EII56166.1| tRNA modification GTPase TrmE [Escherichia coli 3.3884]
gi|406780267|gb|AFS59691.1| tRNA modification GTPase TrmE [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407056854|gb|AFS76905.1| tRNA modification GTPase TrmE [Escherichia coli O104:H4 str.
2011C-3493]
gi|407062751|gb|AFS83798.1| tRNA modification GTPase TrmE [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408340847|gb|EKJ55327.1| tRNA modification GTPase TrmE [Escherichia coli 0.1288]
gi|429355876|gb|EKY92560.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-02030]
gi|429356230|gb|EKY92910.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-02033-1]
gi|429357922|gb|EKY94593.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-02092]
gi|429371290|gb|EKZ07848.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-02093]
gi|429373293|gb|EKZ09840.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-02281]
gi|429376045|gb|EKZ12576.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-02318]
gi|429387620|gb|EKZ24059.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-02913]
gi|429390383|gb|EKZ26797.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-03439]
gi|429390834|gb|EKZ27242.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-03943]
gi|429401240|gb|EKZ37548.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-04080]
gi|429402471|gb|EKZ38762.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429404803|gb|EKZ41073.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429413699|gb|EKZ49884.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429415738|gb|EKZ51897.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429424064|gb|EKZ60170.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429427595|gb|EKZ63676.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429432549|gb|EKZ68588.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429439846|gb|EKZ75827.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429444013|gb|EKZ79960.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429448501|gb|EKZ84414.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429454250|gb|EKZ90113.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec12-0466]
gi|429458629|gb|EKZ94452.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec11-9941]
gi|430895893|gb|ELC18146.1| tRNA modification GTPase mnmE [Escherichia coli KTE12]
gi|431060003|gb|ELD69345.1| tRNA modification GTPase mnmE [Escherichia coli KTE233]
gi|431307142|gb|ELF95443.1| tRNA modification GTPase mnmE [Escherichia coli KTE48]
gi|431359914|gb|ELG46539.1| tRNA modification GTPase mnmE [Escherichia coli KTE101]
gi|431381727|gb|ELG66079.1| tRNA modification GTPase mnmE [Escherichia coli KTE136]
gi|441655441|emb|CCP99922.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
O5:K4(L):H4 str. ATCC 23502]
Length = 454
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 283/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +
Sbjct: 1 MSDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + + I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N A I LSA G+ +LRN L + +E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHALIRLSARTGEGVEVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|417840423|ref|ZP_12486558.1| tRNA modification GTPase mnmE [Haemophilus haemolyticus M19107]
gi|341948483|gb|EGT75112.1| tRNA modification GTPase mnmE [Haemophilus haemolyticus M19107]
Length = 452
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 197/468 (42%), Positives = 282/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + + V K K PR A Y F + ++D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPLATEVAQAVLGKCPK---PRMADYLPFKDADGTVLDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK+P+S+TGED++EL GHGG ++L +LL L+I G+RLA PGEF+++AFLN+K
Sbjct: 62 ALYFKSPNSFTGEDILELQGHGGQVVLDLLLKRILQID---GIRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AA+SA+ SL G+FSK +N L+D +I LRT +E S DFP+E
Sbjct: 119 LDLAQAEAIADLIDATSEQAARSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE 178
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + N L I +L + + K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 179 IDFLADGKIEAN-LRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGR 237
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D +EVE+IGI R W E
Sbjct: 238 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT-------DEVERIGISRAWTE 290
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D II + D+ + D K + + P +PV V NKID + Q + + +
Sbjct: 291 IEQADRIILMLDSSDPESADLSKVRLEFLAKLPTTLPVTIVRNKIDLNDEQASESEQGGY 350
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA GI LLR L + QT +LAR RH+ +L +A +L + +
Sbjct: 351 QIISLSAQTHDGIQLLREHLKQAM-GFQTGMEGGFLARRRHLDALEKAAEHLQIGLVQLT 409
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 410 EFHAG-----ELLAEELRLVQTYLSEITGEFTSDDLLGNIFSSFCIGK 452
>gi|229524906|ref|ZP_04414311.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae bv.
albensis VL426]
gi|229338487|gb|EEO03504.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae bv.
albensis VL426]
Length = 453
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 193/468 (41%), Positives = 283/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG + + V +T L+PR+A YS F ++ +D+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGPLAAHVAQTVTGRT---LRPRYAEYSPFTDEDGQQLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F PHS+TGEDV+EL GHGGP+++ ML+ L+I G+R A PGEF++RAFLN+K
Sbjct: 63 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIK---GVRPARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FSK I+ L++ LI+LR +E + DFPEE
Sbjct: 120 MDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + + VEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DAVEKIGIERAWEE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D + TD + P NI + + NK D +G I + N
Sbjct: 292 IRQADRVLFMVDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGESLGICHVNQP 351
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G++ LR L + + + + E ++AR RH+ +L A +L+ I
Sbjct: 352 TLIRLSAKTGQGVDALRQHLKECMGFSGSQEGG-FMARRRHLDALERAAEHLA-----IG 405
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 406 QQQLEGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|15804300|ref|NP_290339.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EDL933]
gi|12518545|gb|AAG58903.1|AE005601_9 GTP-binding protein in thiophene and furan oxidation [Escherichia
coli O157:H7 str. EDL933]
Length = 454
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 284/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +
Sbjct: 1 MSDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEBV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEBVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + + I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHALIRLSAKTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|401675631|ref|ZP_10807621.1| tRNA modification GTPase TrmE [Enterobacter sp. SST3]
gi|400217162|gb|EJO48058.1| tRNA modification GTPase TrmE [Enterobacter sp. SST3]
Length = 454
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 196/475 (41%), Positives = 283/475 (59%), Gaps = 25/475 (5%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKAREVAEAVLGKLPK---PRYADYLPFKDTDGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 58 PLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLS---GLRIAKPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNQVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + I P +P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPDFIARLPAKLPITVVRNKADVTGETLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + I LSA G++ LRN L + ++E +LAR RH+ +L EA +L
Sbjct: 347 SDVNGHSLIRLSARTGEGVDDLRNHLKQSMGFDTSMEGG-FLARRRHLQALEEAARHLDQ 405
Query: 419 A-IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++I EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLIGAWAG------ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|444334405|ref|ZP_21149960.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
gi|443550450|gb|ELT58746.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
Length = 451
Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 197/468 (42%), Positives = 281/468 (60%), Gaps = 24/468 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + ++V K K PR A Y F + ++D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPKAIEVAQVVLGKCPK---PRMADYLPFKEADGTVLDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK P+S+TGEDV+EL GHGG ++L +LL L I G+RLA PGEF+++AFLN+K
Sbjct: 62 ALYFKGPNSFTGEDVLELQGHGGQVVLDLLLKRILRIE---GIRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AA+SA+ SL G+FS +N L+D +I LRT +E + DFP+E
Sbjct: 119 LDLAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEE 178
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L L I +L K+ + K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 179 IDF-LADGKIEGHLNNIIAQLDKVRAEAKQGSILREGMKVVIAGRPNAGKSSLLNTLAGR 237
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D +EVE+IGI R W E
Sbjct: 238 EAAIVTDIAGTTRDVLREHIHLDGMPLHIIDTAGLRDAT-------DEVERIGISRAWHE 290
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ SD I+ + D+ D D K + P NIP+ + NK D SG + + ++
Sbjct: 291 IEQSDRILLMLDS-SDTEQDLAKVRSEFFAKLPNNIPLTIIRNKADLSGETERLYEEDGY 349
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
+ LSA + G++LLR+ L ++ QT +LAR RH+ +L A +L +
Sbjct: 350 TVVNLSAKTQQGVDLLRDHLKQVM-GYQTGMEGGFLARRRHLEALELAARHLQMGHVQLT 408
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 409 QFHAG-----ELLAEELRMVQSALSEITGQFTSDDLLTNIFSSFCIGK 451
>gi|401761557|ref|YP_006576564.1| tRNA modification GTPase TrmE [Enterobacter cloacae subsp. cloacae
ENHKU01]
gi|400173091|gb|AFP67940.1| tRNA modification GTPase TrmE [Enterobacter cloacae subsp. cloacae
ENHKU01]
Length = 454
Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 196/475 (41%), Positives = 283/475 (59%), Gaps = 25/475 (5%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKAREVAEAVLGKLPK---PRYADYLPFKDSDGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 58 PLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIAKPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNQVMSDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + I P +P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPDFIARLPAKLPITVVRNKADVTGETLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + I LSA G++ LRN L + ++E +LAR RH+ +L EA +L
Sbjct: 347 SDVNGHSLIRLSARTGEGVDDLRNHLKQSMGFDTSMEGG-FLARRRHLQALEEAARHLDQ 405
Query: 419 A-IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++I EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLIGAWAG------ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|392552758|ref|ZP_10299895.1| tRNA modification GTPase TrmE [Pseudoalteromonas spongiae
UST010723-006]
Length = 454
Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 198/471 (42%), Positives = 289/471 (61%), Gaps = 29/471 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PG+GGVGIIR+SGK + E V K K PR+A Y SF +D+G+
Sbjct: 7 IVAQATAPGKGGVGIIRVSGKLSQQVAEKVLGKCPK---PRYADYLSFNTLQGEQLDQGI 63
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK P+S+TGEDV+EL GHGGP+I+ MLL +I G+RLA PGEF++RAFLN+K
Sbjct: 64 ALYFKGPNSFTGEDVLELQGHGGPVIIDMLLREITQID---GVRLAKPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLINA++E AAKSA+ SL G+FSK I+ L++++I+LR +E + DFP+E
Sbjct: 121 MDLTQAEAIADLINANSEQAAKSALHSLQGQFSKHIDTLVEQVIHLRMYVEAAIDFPDEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ N+L I ++L + Q K+ A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDF-LSDGKVANDLNAIIEQLDNVTAQAKQGAIMREGMRVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI---PDINSKIKKNINEVEKIGIERT 304
+ AIVT IAGTTRD + + I I+ I DTAG+ PD+ VE+IGIER
Sbjct: 240 EAAIVTDIAGTTRDVLREHIDIDGMPLHIIDTAGLRESPDV----------VEQIGIERA 289
Query: 305 WVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYK 361
W E+ +D ++++ D+ TD K + + P + + + NK D SG I+
Sbjct: 290 WQEINQADRVLFMVDSTETNETDPAKIWPEFAEKLPQGMGISVIRNKADLSGENIKIDDS 349
Query: 362 NNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIK 421
N + +SA+ G+ L+++ L ++ E S ++AR RH+ +L A Y+L+
Sbjct: 350 ANTPVLSVSANSGEGVELVKSHLKQIMGFQGATEGS-FMARRRHLDALESAAYHLATG-- 406
Query: 422 IINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+Q E + E++AE+LR + L+ I G+ T++DLL IFS FCIGK
Sbjct: 407 -KDQLEMHIAG--EILAEELRLTQQYLNEITGEFTSDDLLGKIFSSFCIGK 454
>gi|300983699|ref|ZP_07176709.1| tRNA modification GTPase TrmE, partial [Escherichia coli MS 200-1]
gi|422360685|ref|ZP_16441314.1| tRNA modification GTPase TrmE, partial [Escherichia coli MS 110-3]
gi|300306872|gb|EFJ61392.1| tRNA modification GTPase TrmE [Escherichia coli MS 200-1]
gi|315285497|gb|EFU44942.1| tRNA modification GTPase TrmE [Escherichia coli MS 110-3]
Length = 475
Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 194/475 (40%), Positives = 285/475 (60%), Gaps = 23/475 (4%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
+++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F +
Sbjct: 21 IMSDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKLPK---PRYADYLPFKDADG 77
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++
Sbjct: 78 SVLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSE 134
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 135 RAFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAA 194
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 195 IDFPDEEIDF-LSDGKIEAQLNNVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSL 253
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IG
Sbjct: 254 LNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIG 306
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
IER W E++ +D ++++ D D + + I P +P+ V NK D +G
Sbjct: 307 IERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG 366
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
++ N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 367 MSEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQ 425
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 426 QGKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 475
>gi|157144348|ref|YP_001451667.1| tRNA modification GTPase TrmE [Citrobacter koseri ATCC BAA-895]
gi|157081553|gb|ABV11231.1| hypothetical protein CKO_00052 [Citrobacter koseri ATCC BAA-895]
Length = 466
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 195/475 (41%), Positives = 283/475 (59%), Gaps = 23/475 (4%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
+++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F +
Sbjct: 12 IMSHNDTIVAQATPPGRGGVGILRISGLKAREVAEAVLGKLPK---PRYADYLPFKDADG 68
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++
Sbjct: 69 TALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIARPGEFSE 125
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 126 RAFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAA 185
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 186 IDFPDEEIDF-LSDGKIEAQLNGVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSL 244
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IG
Sbjct: 245 LNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIG 297
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
IER W E++ +D ++++ D D + I P +P+ V NK D +G
Sbjct: 298 IERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPDFIARLPAKLPITVVRNKADITGETLG 357
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
I+ N + + LSA G+++LRN L + +E +LAR RH+ +L EA +L
Sbjct: 358 ISEVNGHSLVRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALAEAAEHLQ 416
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+S+ EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 417 Q-----GKSQLLGAWAGELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 466
>gi|123444347|ref|YP_001008312.1| tRNA modification GTPase TrmE [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|420260619|ref|ZP_14763296.1| tRNA modification GTPase TrmE [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|166234832|sp|A1JT87.1|MNME_YERE8 RecName: Full=tRNA modification GTPase MnmE
gi|122091308|emb|CAL14194.1| putative thiophene and furan oxidation protein [Yersinia
enterocolitica subsp. enterocolitica 8081]
gi|404511954|gb|EKA25812.1| tRNA modification GTPase TrmE [Yersinia enterocolitica subsp.
enterocolitica WA-314]
Length = 454
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 192/474 (40%), Positives = 285/474 (60%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ I+ ATPPGRGGVGI+R+SG+ ++ + V K K PR+A Y F + +
Sbjct: 1 MSTTDTIVAQATPPGRGGVGILRVSGRAAATVAQAVLGKLPK---PRYADYLPFKDVDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ +YF P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 58 TLDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILAL---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS I+ L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSVRIHQLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L ++ + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D T+ + + P +P+ V NK D +G +
Sbjct: 287 ERAWHEIEQADRVLFMVDGTTTDATEPAAIWPEFMARLPATLPITVVRNKADITGETLGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N + I LSA GI+LLRN L + T E +LAR RH+ +L A +L+
Sbjct: 347 TEVNGHSLIRLSARTGEGIDLLRNHLKQSMGFTSNTEGG-FLARRRHLQALETAAQHLAQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + + EL+AE+LR + LS I G+ +++DLL IFS FCIGK
Sbjct: 406 GHEQLVSAYAG-----ELLAEELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454
>gi|420338515|ref|ZP_14840069.1| tRNA modification GTPase TrmE [Shigella flexneri K-315]
gi|391257830|gb|EIQ16938.1| tRNA modification GTPase TrmE [Shigella flexneri K-315]
Length = 454
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 284/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +
Sbjct: 1 MSDNDTIVAQATPPGRGGVGILRISGFKSREVAETVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + + I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|300940893|ref|ZP_07155419.1| tRNA modification GTPase TrmE, partial [Escherichia coli MS 21-1]
gi|300454323|gb|EFK17816.1| tRNA modification GTPase TrmE [Escherichia coli MS 21-1]
Length = 478
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 194/475 (40%), Positives = 285/475 (60%), Gaps = 23/475 (4%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
+++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F +
Sbjct: 24 IMSDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKLPK---PRYADYLPFKDADG 80
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++
Sbjct: 81 SVLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSE 137
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 138 RAFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAA 197
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 198 IDFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSL 256
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IG
Sbjct: 257 LNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIG 309
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
IER W E++ +D ++++ D D + + I P +P+ V NK D +G
Sbjct: 310 IERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG 369
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
++ N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 370 MSEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQ 428
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 429 QGKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 478
>gi|441505626|ref|ZP_20987608.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Photobacterium sp.
AK15]
gi|441426709|gb|ELR64189.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Photobacterium sp.
AK15]
Length = 455
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 192/475 (40%), Positives = 290/475 (61%), Gaps = 23/475 (4%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M+ I+ ATPPGRGGVGIIR+SG + V + +LKPR+A Y F ++
Sbjct: 1 MIEHTDTIVAQATPPGRGGVGIIRVSGLKAKDVALAVAGR---ELKPRYAEYLPFKNEDG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+ +D+G+ ++FK P+S+TGEDV+EL GHGGP+++ M++ L+I G+R A PGEF++
Sbjct: 58 SALDQGIALFFKGPNSFTGEDVLELQGHGGPVLMDMMIKRILQID---GIRAARPGEFSE 114
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAF+N+KLDL Q EAI DLI+AS+E AAKSA SL G FS +N L++ LI+LR +E +
Sbjct: 115 RAFMNDKLDLAQAEAIADLIDASSEEAAKSAFKSLQGAFSTRVNELVEALIHLRIYVEAA 174
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + L+ +L I ++L + ++ + A++R G+ VV+ G+PN GKSSL
Sbjct: 175 IDFPEEEIDF-LSDGRVSGDLNNIIERLEAVRREANQGAIMREGMKVVIAGRPNAGKSSL 233
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G D AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IG
Sbjct: 234 LNALSGKDSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIG 286
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
IER W E++ +D ++++ D+ TD + I+ P ++ + + NK++ +G +
Sbjct: 287 IERAWDEIQQADRVLFMVDSTTTDATDPKEIWPDFIERLPESMGLTVIRNKVELTGEEAG 346
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
I + +N I LSA GI+ LR L + + T E ++AR RH+ +L A +L
Sbjct: 347 ICHVSNPTLIRLSARTGDGIDNLREHLKECMGFAGTTEGG-FMARRRHLEALERAATHLE 405
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + F E++AE+LR + LS I G+ T++DLL IF+ FCIGK
Sbjct: 406 TG----KEQLEGFMAG-EILAEELRLAQQHLSEITGEFTSDDLLGRIFTSFCIGK 455
>gi|383180729|ref|YP_005458734.1| tRNA modification GTPase TrmE [Shigella sonnei 53G]
gi|415851543|ref|ZP_11528206.1| tRNA modification GTPase TrmE [Shigella sonnei 53G]
gi|323164682|gb|EFZ50477.1| tRNA modification GTPase TrmE [Shigella sonnei 53G]
Length = 454
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 282/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F +
Sbjct: 1 MSDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKLPK---PRYADYLPFKDADGG 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + + I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N A I LSA G+ +LRN L + +E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHALIRLSARTGEGVEVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|332163526|ref|YP_004300103.1| tRNA modification GTPase TrmE [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|386310443|ref|YP_006006499.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Yersinia
enterocolitica subsp. palearctica Y11]
gi|418241576|ref|ZP_12868102.1| tRNA modification GTPase TrmE [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|433548886|ref|ZP_20504932.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Yersinia
enterocolitica IP 10393]
gi|318608032|emb|CBY29530.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Yersinia
enterocolitica subsp. palearctica Y11]
gi|325667756|gb|ADZ44400.1| tRNA modification GTPase TrmE [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330861751|emb|CBX71925.1| tRNA modification GTPase mnmE [Yersinia enterocolitica W22703]
gi|351778990|gb|EHB21117.1| tRNA modification GTPase TrmE [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|431789927|emb|CCO67972.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Yersinia
enterocolitica IP 10393]
Length = 454
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 192/474 (40%), Positives = 285/474 (60%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ I+ ATPPGRGGVGI+R+SG+ ++ + V K K PR+A Y F + +
Sbjct: 1 MSTTDTIVAQATPPGRGGVGILRVSGRAAATVAQAVLGKLPK---PRYADYLPFKDVDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ +YF P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 58 TLDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILAL---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS I+ L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSVRIHQLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L ++ + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFD---KKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D T+ + + P +P+ V NK D +G +
Sbjct: 287 ERAWHEIEQADRVLFMVDGTTTDATEPATIWPEFMARLPATLPITVVRNKADITGETLGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N + I LSA GI+LLRN L + T E +LAR RH+ +L A +L+
Sbjct: 347 TEVNGHSLIRLSARTGEGIDLLRNHLKQSMGFTSNTEGG-FLARRRHLQALETAAQHLAQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + + EL+AE+LR + LS I G+ +++DLL IFS FCIGK
Sbjct: 406 GHEQLVSAYAG-----ELLAEELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454
>gi|251791873|ref|YP_003006593.1| tRNA modification GTPase TrmE [Aggregatibacter aphrophilus NJ8700]
gi|422336963|ref|ZP_16417935.1| tRNA modification GTPase mnmE [Aggregatibacter aphrophilus F0387]
gi|247533260|gb|ACS96506.1| tRNA modification GTPase TrmE [Aggregatibacter aphrophilus NJ8700]
gi|353345515|gb|EHB89806.1| tRNA modification GTPase mnmE [Aggregatibacter aphrophilus F0387]
Length = 451
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 194/470 (41%), Positives = 288/470 (61%), Gaps = 28/470 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG N + + V K K PR A Y F ++ ++D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPNAIDVAQAVLGKCPK---PRMADYLPFKDEDGTLLDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK+P+S+TGEDV+EL GHGG ++L +LL L I G+RLA PGEF+++AFLN+K
Sbjct: 62 ALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILRID---GIRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AA+SA+ SL G+FS +N L+D +I LRT +E + DFP+E
Sbjct: 119 LDLAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEE 178
Query: 188 QELILNK--NDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLV 245
+ + + + N++I +L + + K+ ++++ G+ VV+ G+PN GKSSL N+L
Sbjct: 179 IDFLADGKIESYLNDII---AQLDGVRAEAKQGSILQEGMKVVIAGRPNAGKSSLLNALA 235
Query: 246 GSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTW 305
G + AIVT IAGTTRD + + I ++ I DTAG +++ +EVE+IGI R W
Sbjct: 236 GREAAIVTDIAGTTRDVLREHIHLDGMPLHIIDTAG-------LREATDEVERIGISRAW 288
Query: 306 VELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKN 362
E++ +D I+ + D D D K + + P +IPV + NK D +G Q+ + +
Sbjct: 289 SEIEQADRILLMLDGS-DTEQDLSKVRSEFLAKLPNHIPVTIIRNKADLTGEQEGLYEEQ 347
Query: 363 NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKI 422
+ LSA + G+ +LRN L + QT +LAR RH+ +L +A +L +I
Sbjct: 348 GYTVVSLSAKTQRGVEILRNHLKQSM-GYQTGMEGGFLARRRHLEALEQAAQHL----QI 402
Query: 423 INQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ F EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 403 GHVQLTEFHAG-ELLAEELRLVQSALSEITGQFTSDDLLTNIFSSFCIGK 451
>gi|417599147|ref|ZP_12249771.1| tRNA modification GTPase TrmE [Escherichia coli 3030-1]
gi|345348643|gb|EGW80936.1| tRNA modification GTPase TrmE [Escherichia coli 3030-1]
Length = 454
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 283/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +
Sbjct: 1 MSDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVETLTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + + I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N A I LSA G+ +LRN L + +E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHALIRLSARTGEGVEVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|387126051|ref|YP_006294656.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Methylophaga sp.
JAM1]
gi|386273113|gb|AFI83011.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Methylophaga sp.
JAM1]
Length = 452
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 201/472 (42%), Positives = 269/472 (56%), Gaps = 35/472 (7%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ IAT PGRGGVG++RLSG I E +C K + R A ++ F + IID G+
Sbjct: 9 IVAIATAPGRGGVGVVRLSGPESTQIAEQICGKLAQ---TRQAKFTHFRAADKEIIDSGI 65
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF AP S+TGEDVIEL GHG P+++ L +E+G R+A PGEF++RAFLN K
Sbjct: 66 ALYFAAPASFTGEDVIELQGHGSPLVMARLCQRAVELGA----RMARPGEFSERAFLNGK 121
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EA+ DLI +STE AA+SAM SL G+FSK +N L +L LR +E S DF +E
Sbjct: 122 MDLAQAEAVADLIESSTEVAARSAMRSLQGEFSKKVNDFLQELTYLRMFVEASIDFADE- 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQ-----QGKKRA--LIRNGLNVVLIGQPNVGKSSL 240
+ DF E ++ K+L +++ QG R L+R G++VVL GQPN GKSSL
Sbjct: 181 ------EIDFLGE-AQVDKQLQQLLATLAGIQGSARQGRLLREGISVVLAGQPNAGKSSL 233
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N L G D AIVT +AGTTRD + + I + +I+DTAG+ D S I VE G
Sbjct: 234 HNRLAGHDAAIVTEVAGTTRDVLREQIHLGGLPLRISDTAGLHDATSDI------VELEG 287
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
I RT EL +D I+ + D + T+ D KI+ P + + NKID SGH I
Sbjct: 288 IRRTQNELAQADHILLLIDDQLGM-TEQDTKILSALPSDKAFTLIRNKIDQSGHAAEITL 346
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
+N I+ IYLSA G++LL L +++ E ++AR RH+ +L A +
Sbjct: 347 ENGISVIYLSAKNGEGMDLLTQHLCEVV-GFHPEEEGIFMARHRHLDALQRAQQAIEAGY 405
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AE+LR L I G TT DLLD IFS FCIGK
Sbjct: 406 DCLTGMGAG-----ELLAEELRIAQSALGEITGTFTTEDLLDRIFSSFCIGK 452
>gi|423111067|ref|ZP_17098762.1| tRNA modification GTPase mnmE [Klebsiella oxytoca 10-5243]
gi|376377547|gb|EHS90316.1| tRNA modification GTPase mnmE [Klebsiella oxytoca 10-5243]
Length = 454
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 285/474 (60%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F + +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKARDVAQAVLGKLPK---PRYADYLPFKDSDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSTRVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNAVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D N +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAN-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHT---DFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D T D I P N+P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTGATDPADIWPDFIARLPKNLPITVVRNKADITGETLGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N+ + + LSA G+++LRN L + +E +LAR RH+ +L++A +L
Sbjct: 347 SEVNDHSLVRLSARTGEGVDVLRNHLKQSMGFETNMEGG-FLARRRHLQALSDAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|90408840|ref|ZP_01216982.1| thiophene and furan oxidation protein ThdF [Psychromonas sp. CNPT3]
gi|90310067|gb|EAS38210.1| thiophene and furan oxidation protein ThdF [Psychromonas sp. CNPT3]
Length = 455
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 198/469 (42%), Positives = 288/469 (61%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQL-KPRFATYSSFFCKNNNIIDKG 66
I+ AT GRGGVGIIR+SG + VE+V K +L K R+A Y F ++D+G
Sbjct: 8 IVAQATATGRGGVGIIRVSGPD----VELVAKHILGKLPKVRYAEYLPFMDDKGEVLDQG 63
Query: 67 LVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNN 126
+ ++FKAPHS+TGEDV+EL GHGGPI++ ML+ + L I LR A PGEF++RAFLN+
Sbjct: 64 IALFFKAPHSFTGEDVLELQGHGGPIVMDMLIQAILTIKN---LRGAAPGEFSERAFLND 120
Query: 127 KLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEE 186
K+DL Q EAI DLI A++E AA+SA+ SL G+FS IN L++ LI+LR +E S DFPEE
Sbjct: 121 KMDLAQAEAIADLIEATSEQAARSALHSLQGEFSNKINALVESLIHLRIYVEASIDFPEE 180
Query: 187 NQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVG 246
+ L+ ++L +I L + ++ ++ A++R+G+ VV+ G+PN GKSSL NSLVG
Sbjct: 181 EVDF-LSDGKIASDLAQIVANLESVKKEAQQGAILRDGMKVVIAGRPNAGKSSLLNSLVG 239
Query: 247 SDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWV 306
+D AIVT IAGTTRD + + I I+ I DTAG ++++ +EVEKIGIER W
Sbjct: 240 ADRAIVTEIAGTTRDVMREYIHIDGMPLHIIDTAG-------LRESADEVEKIGIERAWK 292
Query: 307 ELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNN 363
E+K +D ++++ DA TD +K P ++ + V NK D +G + N
Sbjct: 293 EIKTADRVLFMLDATTTDSTDPYAIWPDFMKQLPESVGLTVVRNKADLTGESVLVKEGNQ 352
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
LSA +G+ L+ L + + T + ++AR RH+ +L+ A ++L +
Sbjct: 353 YPVYSLSAKTGLGMQALKEHLKESMGYTGST-GGGFMARRRHLEALDNAQHHL-----LE 406
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + K EL+AE+LR + LS I G +++DLL IFS FCIGK
Sbjct: 407 GKVQLEEYKAGELLAEELRITQQYLSDITGAFSSDDLLGKIFSSFCIGK 455
>gi|345301592|ref|YP_004830950.1| tRNA modification GTPase mnmE [Enterobacter asburiae LF7a]
gi|345095529|gb|AEN67165.1| tRNA modification GTPase mnmE [Enterobacter asburiae LF7a]
Length = 454
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 196/475 (41%), Positives = 283/475 (59%), Gaps = 25/475 (5%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKAREVAEAVLGKLPK---PRYADYLPFKDADGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIAKPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNNVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + I P +P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTAAVDPAEIWPDFIARLPAKLPITVVRNKADVTGETLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNE-ANYYLS 417
+ N + I LSA G++ LRN L + ++E +LAR RH+ +L E AN+ +
Sbjct: 347 SDVNGHSLIRLSARTGEGVDDLRNHLKQSMGFDTSMEGG-FLARRRHLQALEEAANHLVQ 405
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++I EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLIGAWAG------ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|350529807|ref|ZP_08908748.1| tRNA modification GTPase TrmE [Vibrio rotiferianus DAT722]
Length = 453
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 195/469 (41%), Positives = 286/469 (60%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG ++ + T K LKPR+A Y F ++ ++D+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGPKAN---QVALEVTGKTLKPRYAEYLPFQAEDGTVLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF PHS+TGEDV+EL GHGGP+++ ML+ L I G+R A PGEF++RAFLN+K
Sbjct: 63 ALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILGID---GVRAARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FS+ I L++ LI+LR +E + DFPEE
Sbjct: 120 MDLTQAEAIADLIDASSEEAAKSALQSLQGQFSQRIQTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDFLADGK-VSGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + +EVEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVEKIGIERAWDE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQKNINYKNN 363
+ +D ++++ D + TD K I +F P +I + + NK D +G + I + N+
Sbjct: 292 IAQADRVLFMVDGTTTEATD-PKDIWPDFVDRLPNSIGMTVIRNKADQTGEEMGICHVND 350
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA G++ LR+ L + + + E ++AR RH+ +L A +L I
Sbjct: 351 PTLIRLSAKTGAGVDALRSHLKECMGFSGNTEGG-FMARRRHLDALERAAQHLQ-----I 404
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 405 GQEQLEGYMAGEILAEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|425074171|ref|ZP_18477274.1| tRNA modification GTPase mnmE [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|425084807|ref|ZP_18487900.1| tRNA modification GTPase mnmE [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|405595636|gb|EKB69006.1| tRNA modification GTPase mnmE [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|405608222|gb|EKB81173.1| tRNA modification GTPase mnmE [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
Length = 454
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 195/474 (41%), Positives = 281/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKARDVAQAVLGKLPK---PRYADYLPFNDVDGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 58 PLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNEVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D N +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAN-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E+ +D ++++ D D + I+ P +P+ V NK D +G I
Sbjct: 287 ERAWQEIAQADRVLFMVDGTTTSAVDPSEIWPDFIERLPAKLPITVVRNKADVTGEALGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + I LSA G+ +LRN L + +E +LAR RH+ +L EA +L
Sbjct: 347 SEVNGHSLIRLSARTGEGVEVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEEAANHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|300932339|ref|ZP_07147606.1| tRNA modification GTPase TrmE, partial [Escherichia coli MS 187-1]
gi|300459909|gb|EFK23402.1| tRNA modification GTPase TrmE [Escherichia coli MS 187-1]
Length = 474
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 194/475 (40%), Positives = 284/475 (59%), Gaps = 23/475 (4%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
+++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F +
Sbjct: 20 IMSDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKLPK---PRYADYLPFKDADG 76
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++
Sbjct: 77 SVLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSE 133
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 134 RAFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAA 193
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 194 IDFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSL 252
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IG
Sbjct: 253 LNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIG 305
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
IER W E++ +D ++++ D D + + I P +P+ V NK D +G
Sbjct: 306 IERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG 365
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
++ N A I LSA G+ +LRN L + +E +LAR RH+ +L +A +L
Sbjct: 366 MSEVNGHALIRLSARTGEGVEVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQ 424
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 425 QGKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 474
>gi|152972614|ref|YP_001337760.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|365141182|ref|ZP_09347037.1| tRNA modification GTPase mnmE [Klebsiella sp. 4_1_44FAA]
gi|386037252|ref|YP_005957165.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae KCTC 2242]
gi|424833081|ref|ZP_18257809.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|425093998|ref|ZP_18497082.1| tRNA modification GTPase mnmE [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|166200482|sp|A6TG09.1|MNME_KLEP7 RecName: Full=tRNA modification GTPase MnmE
gi|150957463|gb|ABR79493.1| tRNA modification GTPase [Klebsiella pneumoniae subsp. pneumoniae
MGH 78578]
gi|339764380|gb|AEK00601.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae KCTC 2242]
gi|363653027|gb|EHL92020.1| tRNA modification GTPase mnmE [Klebsiella sp. 4_1_44FAA]
gi|405610494|gb|EKB83298.1| tRNA modification GTPase mnmE [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|414710530|emb|CCN32234.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
Length = 454
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 195/474 (41%), Positives = 281/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKARDVAQAVLGKLPK---PRYADYLPFNDVDGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 58 PLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNEVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D N +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAN-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E+ +D ++++ D D + I+ P +P+ V NK D +G I
Sbjct: 287 ERAWQEIAQADRVLFMVDGTTTSAVDPAEIWPDFIERLPAKLPITVVRNKADVTGEALGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + I LSA G+ +LRN L + +E +LAR RH+ +L EA +L
Sbjct: 347 SEVNGHSLIRLSARTGDGVEVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEEAANHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|418464978|ref|ZP_13035917.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans RhAA1]
gi|359756933|gb|EHK91090.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans RhAA1]
Length = 451
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 195/470 (41%), Positives = 284/470 (60%), Gaps = 28/470 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + + V K K PR A Y F + ++D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPKAVEVAQAVLGKCPK---PRMADYLPFKEGDGTVLDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK P+S+TGEDV+EL GHGG ++L +LL L I G+RLA PGEF+++AFLN+K
Sbjct: 62 ALYFKGPNSFTGEDVLELQGHGGQVVLDLLLKRILRIE---GIRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AA+SA+ SL G+FS +N L+D +I LRT +E + DFP+E
Sbjct: 119 LDLAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEE 178
Query: 188 QELILNK--NDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLV 245
+ + + + N++I +L K+ + K+ +++R G+ VV+ G+PN GKSSL N+L
Sbjct: 179 IDFLADGKIEGYLNDII---AQLDKVRAEAKQGSILREGMKVVIAGRPNAGKSSLLNALA 235
Query: 246 GSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTW 305
G + AIVT IAGTTRD + + I ++ I DTAG+ D +EVE+IGI R W
Sbjct: 236 GREAAIVTDIAGTTRDVLREHIHLDGMPLHIIDTAGLRDAT-------DEVERIGISRAW 288
Query: 306 VELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKN 362
E++ +D I+ + D+ D D K + + P NIP+ + NK D SG + + ++
Sbjct: 289 HEIEQADRILLMLDSS-DTEQDLTKVRSEFLAKLPNNIPLTIIRNKADLSGEAERLYEED 347
Query: 363 NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKI 422
+ LSA + G++LLR+ L + QT +LAR RH+ +L A +L
Sbjct: 348 GYTVVNLSAKTQQGLDLLRDHLKQAM-GYQTGMEGGFLARRRHLEALELAAQHLQLGQVQ 406
Query: 423 INQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ Q EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 407 LTQFHAG-----ELLAEELRMVQSALSEITGQFTSDDLLTNIFSSFCIGK 451
>gi|260870437|ref|YP_003236839.1| GTPase TrmE [Escherichia coli O111:H- str. 11128]
gi|415821757|ref|ZP_11510538.1| tRNA modification GTPase TrmE [Escherichia coli OK1180]
gi|417202027|ref|ZP_12018277.1| tRNA modification GTPase TrmE [Escherichia coli 4.0522]
gi|417209887|ref|ZP_12020989.1| tRNA modification GTPase TrmE [Escherichia coli JB1-95]
gi|417594171|ref|ZP_12244857.1| tRNA modification GTPase TrmE [Escherichia coli 2534-86]
gi|419199487|ref|ZP_13742776.1| tRNA modification GTPase TrmE [Escherichia coli DEC8A]
gi|419205760|ref|ZP_13748915.1| tRNA modification GTPase TrmE [Escherichia coli DEC8B]
gi|419223895|ref|ZP_13766805.1| tRNA modification GTPase TrmE [Escherichia coli DEC8E]
gi|419890116|ref|ZP_14410424.1| tRNA modification GTPase TrmE [Escherichia coli O111:H8 str.
CVM9570]
gi|419898294|ref|ZP_14417854.1| tRNA modification GTPase TrmE [Escherichia coli O111:H8 str.
CVM9574]
gi|420091569|ref|ZP_14603314.1| tRNA modification GTPase TrmE [Escherichia coli O111:H8 str.
CVM9602]
gi|420097225|ref|ZP_14608528.1| tRNA modification GTPase TrmE [Escherichia coli O111:H8 str.
CVM9634]
gi|424773434|ref|ZP_18200494.1| tRNA modification GTPase TrmE [Escherichia coli O111:H8 str.
CFSAN001632]
gi|257766793|dbj|BAI38288.1| GTPase TrmE [Escherichia coli O111:H- str. 11128]
gi|323177718|gb|EFZ63302.1| tRNA modification GTPase TrmE [Escherichia coli OK1180]
gi|345331278|gb|EGW63738.1| tRNA modification GTPase TrmE [Escherichia coli 2534-86]
gi|378043555|gb|EHW05990.1| tRNA modification GTPase TrmE [Escherichia coli DEC8A]
gi|378043771|gb|EHW06201.1| tRNA modification GTPase TrmE [Escherichia coli DEC8B]
gi|378061596|gb|EHW23780.1| tRNA modification GTPase TrmE [Escherichia coli DEC8E]
gi|386186914|gb|EIH75737.1| tRNA modification GTPase TrmE [Escherichia coli 4.0522]
gi|386195940|gb|EIH90168.1| tRNA modification GTPase TrmE [Escherichia coli JB1-95]
gi|388353922|gb|EIL18886.1| tRNA modification GTPase TrmE [Escherichia coli O111:H8 str.
CVM9574]
gi|388355679|gb|EIL20502.1| tRNA modification GTPase TrmE [Escherichia coli O111:H8 str.
CVM9570]
gi|394382823|gb|EJE60439.1| tRNA modification GTPase TrmE [Escherichia coli O111:H8 str.
CVM9602]
gi|394384757|gb|EJE62310.1| tRNA modification GTPase TrmE [Escherichia coli O111:H8 str.
CVM9634]
gi|421936203|gb|EKT93870.1| tRNA modification GTPase TrmE [Escherichia coli O111:H8 str.
CFSAN001632]
Length = 454
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 283/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F N +
Sbjct: 1 MSDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKLPK---PRYADYLPFKDANGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFL +KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLYDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + + I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|205422290|sp|A9MJT6.2|MNME_SALAR RecName: Full=tRNA modification GTPase MnmE
Length = 454
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 282/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG N + + V K K PR+A Y F +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLNAKKVAQTVLGKLPK---PRYADYLPFKDADGA 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I G+R+A PGEF++R
Sbjct: 58 TLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGVRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNGVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHVIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFD---KKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D I P N+P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPGDIWPDFIARLPKNLPITVVRNKADITGEMLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + + LSA G+++LRN L + +E +LAR RH+ +L EA +L
Sbjct: 347 SEVNGHSLVRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALAEAAEHLEQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|423126518|ref|ZP_17114197.1| tRNA modification GTPase mnmE [Klebsiella oxytoca 10-5250]
gi|376397152|gb|EHT09787.1| tRNA modification GTPase mnmE [Klebsiella oxytoca 10-5250]
Length = 454
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 285/474 (60%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F + +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKARDVAQAVLGKLPK---PRYADYLPFKDSDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSTRVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D N +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAN-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D TD I P N+P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDATDPADIWPDFIARLPKNLPITVVRNKADITGETLGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N+ + + LSA G+++LRN L + +E +LAR RH+ +L++A +L
Sbjct: 347 SEVNDHSLVRLSARTGEGVDVLRNHLKQSMGFETNMEGG-FLARRRHLQALSDAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|145628055|ref|ZP_01783856.1| tRNA modification GTPase TrmE [Haemophilus influenzae 22.1-21]
gi|144979830|gb|EDJ89489.1| tRNA modification GTPase TrmE [Haemophilus influenzae 22.1-21]
Length = 452
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 196/468 (41%), Positives = 282/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + + + K K PR A Y F + I+D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPLATKVAQAILGKCPK---PRMADYLPFKDADGTILDQGV 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK+P+S+TGEDV+EL GHGG ++L +LL L+I G+RLA PGEF+++AFLN+K
Sbjct: 62 ALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQID---GIRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E A +SA+ SL G+FSK +N L+D +I LRT +E S DFP+E
Sbjct: 119 LDLAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNALVDSVIYLRTYVEASIDFPDEE 178
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + N L I +L + + K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 179 IDFLADGKIEAN-LRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGR 237
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D +EVE+IGI R W E
Sbjct: 238 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT-------DEVERIGISRAWTE 290
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D II + D+ + D K + + P +PV V NKID +G Q + + +
Sbjct: 291 IEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGY 350
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G+ LLR L + IE +LAR RH+ +L +A +L + +
Sbjct: 351 QIISLSAQTHDGVKLLREHLKQAMGFQTGIEGG-FLARRRHLDALEKAAEHLQIGLVQLT 409
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AE+LR LS I G+ T++DLL +IFS FCIGK
Sbjct: 410 EFYAG-----ELLAEELRLVQSYLSEITGQFTSDDLLGSIFSSFCIGK 452
>gi|424034650|ref|ZP_17774053.1| tRNA modification GTPase TrmE [Vibrio cholerae HENC-01]
gi|424037663|ref|ZP_17776402.1| tRNA modification GTPase TrmE [Vibrio cholerae HENC-02]
gi|408872311|gb|EKM11532.1| tRNA modification GTPase TrmE [Vibrio cholerae HENC-01]
gi|408895289|gb|EKM31729.1| tRNA modification GTPase TrmE [Vibrio cholerae HENC-02]
Length = 453
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 196/469 (41%), Positives = 284/469 (60%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG ++ + T K LKPR+A Y F ++ ++D+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGPKAN---QVALEVTGKTLKPRYAEYLPFQAEDGTVLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF PHS+TGEDV+EL GHGGP+++ ML+ L I G+R A PGEF++RAFLN+K
Sbjct: 63 ALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILGID---GVRAARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FS+ I L++ LI+LR +E + DFPEE
Sbjct: 120 MDLTQAEAIADLIDASSEEAAKSALQSLQGQFSQRIQTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDFLADGK-VSADLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + +EVEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVEKIGIERAWDE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQKNINYKNN 363
+ +D ++++ D TD K I +F P NI + + NK D +G + I + N+
Sbjct: 292 IAQADRVLFMVDGTTTDATD-PKDIWPDFVDRLPNNIGMTVIRNKADQTGEEMGICHVND 350
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA G++ LR L + + + E ++AR RH+ +L A +L I
Sbjct: 351 PTLIRLSAKTGAGVDALRTHLKECMGFSGNTEGG-FMARRRHLDALERAAQHLQ-----I 404
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 405 GQEQLEGFMAGEILAEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|238897217|ref|YP_002921965.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|330005209|ref|ZP_08305168.1| tRNA modification GTPase TrmE [Klebsiella sp. MS 92-3]
gi|419974156|ref|ZP_14489577.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|419979443|ref|ZP_14494734.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419986261|ref|ZP_14501395.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419991939|ref|ZP_14506900.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419996964|ref|ZP_14511763.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420004150|ref|ZP_14518790.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420009885|ref|ZP_14524364.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420015081|ref|ZP_14529384.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420021406|ref|ZP_14535586.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420026940|ref|ZP_14540938.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420032738|ref|ZP_14546550.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|420039440|ref|ZP_14553074.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420044445|ref|ZP_14557925.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420050371|ref|ZP_14563671.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420055759|ref|ZP_14568923.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420062045|ref|ZP_14575025.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420066347|ref|ZP_14579148.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|420071395|ref|ZP_14584041.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420076697|ref|ZP_14589167.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420085375|ref|ZP_14597602.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|428939000|ref|ZP_19012118.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae VA360]
gi|238549547|dbj|BAH65898.1| tRNA modification GTPase [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|328536341|gb|EGF62703.1| tRNA modification GTPase TrmE [Klebsiella sp. MS 92-3]
gi|397346738|gb|EJJ39851.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397348587|gb|EJJ41686.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397348945|gb|EJJ42042.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397362325|gb|EJJ54976.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397363828|gb|EJJ56464.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397366966|gb|EJJ59580.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397377129|gb|EJJ69370.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397380027|gb|EJJ72213.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397386789|gb|EJJ78852.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397394326|gb|EJJ86057.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397396778|gb|EJJ88464.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397403130|gb|EJJ94715.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397411340|gb|EJK02599.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397411879|gb|EJK03124.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397421379|gb|EJK12399.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397429155|gb|EJK19875.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397430109|gb|EJK20810.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397440367|gb|EJK30776.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397447027|gb|EJK37231.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397449253|gb|EJK39396.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|426304757|gb|EKV66894.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae VA360]
Length = 454
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 195/474 (41%), Positives = 281/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKARDVAQAVLGKLPK---PRYADYLPFNDVDGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 58 PLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNEVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D N +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAN-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E+ +D ++++ D D + I+ P +P+ V NK D +G I
Sbjct: 287 ERAWQEIAQADRVLFMVDGTTTGAVDPAEIWPDFIERLPAKLPITVVRNKADVTGEALGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + I LSA G+ +LRN L + +E +LAR RH+ +L EA +L
Sbjct: 347 SEVNGHSLIRLSARTGEGVEVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEEAANHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|161505627|ref|YP_001572739.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:- str. RSK2980]
gi|160866974|gb|ABX23597.1| hypothetical protein SARI_03803 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 472
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 194/475 (40%), Positives = 283/475 (59%), Gaps = 23/475 (4%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
+++ N I+ ATPPGRGGVGI+R+SG N + + V K K PR+A Y F +
Sbjct: 18 IMSHNDTIVAQATPPGRGGVGILRISGLNAKKVAQTVLGKLPK---PRYADYLPFKDADG 74
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I G+R+A PGEF++
Sbjct: 75 ATLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGVRIARPGEFSE 131
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 132 RAFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAA 191
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 192 IDFPDEEIDF-LSDGKIEAQLNGVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSL 250
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + +EVE+IG
Sbjct: 251 LNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHVIDTAGLRDAS-------DEVERIG 303
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
IER W E++ +D ++++ D D I P N+P+ V NK D +G
Sbjct: 304 IERAWQEIEQADRVLFMVDGTTTDAVDPGDIWPDFIARLPKNLPITVVRNKADITGEMLG 363
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
I+ N + + LSA G+++LRN L + +E +LAR RH+ +L EA +L
Sbjct: 364 ISEVNGHSLVRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALAEAAEHLE 422
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 423 QGKAQLLGAWAG-----ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 472
>gi|296105488|ref|YP_003615634.1| tRNA modification GTPase TrmE [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295059947|gb|ADF64685.1| tRNA modification GTPase TrmE [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 454
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 196/475 (41%), Positives = 282/475 (59%), Gaps = 25/475 (5%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKAREVAEAVLGKLPK---PRYADYLPFKDSDGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 58 PLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIAKPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVMTDLEAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + I P +P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPDFIARLPAKLPITVVRNKADVTGETLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + I LSA G++ LRN L + ++E +LAR RH+ +L EA +L
Sbjct: 347 SDVNGHSLIRLSARTGEGVDDLRNHLKQSMGFDTSMEGG-FLARRRHLQALEEAARHLEQ 405
Query: 419 A-IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++I EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLIGAWAG------ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|424931082|ref|ZP_18349454.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|425083883|ref|ZP_18486980.1| tRNA modification GTPase mnmE [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|428931902|ref|ZP_19005490.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae JHCK1]
gi|449049131|ref|ZP_21731380.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae hvKP1]
gi|405598375|gb|EKB71604.1| tRNA modification GTPase mnmE [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|407805269|gb|EKF76520.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|426307599|gb|EKV69677.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae JHCK1]
gi|448876881|gb|EMB11858.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae hvKP1]
Length = 454
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 195/474 (41%), Positives = 281/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKARDVAQAVLGKLPK---PRYADYLPFNDVDGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 58 PLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNEVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D N +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAN-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E+ +D ++++ D D + I+ P +P+ V NK D +G I
Sbjct: 287 ERAWQEIAQADRVLFMVDGTTTGAVDPAEIWPDFIERLPAKLPITVVRNKADVTGEALGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + I LSA G+ +LRN L + +E +LAR RH+ +L EA +L
Sbjct: 347 SEVNGHSLIRLSARTGDGVEVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEEAANHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|84394513|ref|ZP_00993223.1| tRNA modification GTPase [Vibrio splendidus 12B01]
gi|84374866|gb|EAP91803.1| tRNA modification GTPase [Vibrio splendidus 12B01]
Length = 453
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 200/469 (42%), Positives = 282/469 (60%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG ++ + T K LKPR+A Y F + +D+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGP---LATQVALEVTGKTLKPRYAEYLPFKSDDGIELDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF PHS+TGEDV+EL GHGGP+++ ML+ L I G+R A PGEF++RAFLN+K
Sbjct: 63 ALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILAIS---GVRAARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FSK IN L+D LI LR +E + DFPEE
Sbjct: 120 MDLTQAEAIADLIDASSEEAAKSALQSLQGEFSKRINTLVDSLIYLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + +L I L + Q+ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDFLADGK-VSTDLQAIIDNLEAVRQEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + +EVEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVEKIGIERAWEE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQKNINYKNN 363
+ +D ++++ D TD K I +F P NI + + NK D + + I + N+
Sbjct: 292 IAQADRVLFMVDGTTTDATD-PKDIWPDFVDRLPDNIGMTVIRNKADQTSEELGICHVND 350
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA G++ LR+ L D + E ++AR RH+ +L A+ +L I
Sbjct: 351 PTLIRLSAKTGQGVDALRSHLKDCMGFAGGHEGG-FMARRRHLDALERASEHLD-----I 404
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 405 GQQQLEGYMAGEILAEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|357407368|ref|YP_004919292.1| tRNA modification GTPase TrmE [Methylomicrobium alcaliphilum 20Z]
gi|351720033|emb|CCE25709.1| tRNA modification GTPase TrmE [Methylomicrobium alcaliphilum 20Z]
Length = 448
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 200/468 (42%), Positives = 280/468 (59%), Gaps = 25/468 (5%)
Query: 5 NSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIID 64
N+ I IATPPG GGVGI+R+SG ++ I K T + L PR+A + F + ++ID
Sbjct: 6 NNTIAAIATPPGNGGVGIVRISGP---AVSIIAAKLTDRPLPPRYAVLTPFIDSDGSVID 62
Query: 65 KGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFL 124
G+ IYF AP SYTGED++EL GHGG IIL +LL L S+G RLA PGEFT+RAFL
Sbjct: 63 SGIAIYFPAPASYTGEDILELQGHGGSIILDILLKRVL----SLGARLARPGEFTERAFL 118
Query: 125 NNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFP 184
N K+DL Q EA+ DLI +STE +A+SA S+ G FSK IN L+++L LR +E + DF
Sbjct: 119 NGKIDLAQAEAVADLIESSTEQSARSAQQSMRGVFSKQINELVEELTELRIYVEAAIDFV 178
Query: 185 EENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSL 244
+E + L N + ++ +K+ I+ ++ L+R+G+ +VL G+PN GKSSL N+L
Sbjct: 179 DEEIDF-LGDGVVQNRIDRLAEKIRTILATAQQGRLLRDGMTIVLAGKPNAGKSSLLNAL 237
Query: 245 VGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304
G D AIVT IAGTTRD + + IQI+ I DTAG+ D + N VEK GI R
Sbjct: 238 AGHDAAIVTDIAGTTRDVLKERIQIDGMPLHIIDTAGLRDSD-------NAVEKEGIRRA 290
Query: 305 WVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
E+ +D ++ + DA +H + II N P ++PV ++NKID G + I
Sbjct: 291 REEMNRADKVLLMIDATDPEH----QSIIDNLPEHVPVTKIYNKIDLIGIKPEIRESEQG 346
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
IYLS K G++LL+ L + I Q+ + ++AR RHI +L + ++ A
Sbjct: 347 TQIYLSVKKEQGLHLLKQYLKNSI-GYQSETDNVFIARRRHIEALQKGLMFVQSA----- 400
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q++ + EL+AEDLR L I G +++DLL IFS FCIGK
Sbjct: 401 QAQLQNHQAGELVAEDLRQAQHCLGEITGAVSSDDLLGLIFSSFCIGK 448
>gi|420367718|ref|ZP_14868495.1| tRNA modification GTPase TrmE [Shigella flexneri 1235-66]
gi|391322940|gb|EIQ79611.1| tRNA modification GTPase TrmE [Shigella flexneri 1235-66]
Length = 454
Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 281/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKASEVAETVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNSVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARLPAKLPITVVRNKADITGETLGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + + LSA G+++LRN L + +E +LAR RH+ +L EA +L
Sbjct: 347 SEVNGHSLVRLSARTGEGVDVLRNHLKQSMGFETNMEGG-FLARRRHLQALAEAAKHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|365847371|ref|ZP_09387860.1| tRNA modification GTPase TrmE [Yokenella regensburgei ATCC 43003]
gi|364572625|gb|EHM50165.1| tRNA modification GTPase TrmE [Yokenella regensburgei ATCC 43003]
Length = 454
Score = 355 bits (911), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 283/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKAREVAEAVLGKLPK---PRYADYLPFKDTDGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 58 PLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIAKPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSSRVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNTVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + I P N+P+ V NK D +G + +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPDFIARLPKNLPITVVRNKADVTGETEGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N + + LSA G+++LRN L + +E +LAR RH+ +L A +L
Sbjct: 347 TDVNGHSLVRLSARTGGGVDVLRNHLKQSMGFETNMEGG-FLARRRHLQALETAATHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 -----GKAQLLGARAGELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|260581920|ref|ZP_05849716.1| tRNA modification GTPase TrmE [Haemophilus influenzae NT127]
gi|260095113|gb|EEW79005.1| tRNA modification GTPase TrmE [Haemophilus influenzae NT127]
Length = 452
Score = 355 bits (911), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 196/468 (41%), Positives = 282/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + + + K K PR A Y F + I+D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPLATEVAQAILGKCPK---PRMADYLPFKDADGTILDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK+P+S+TGEDV+EL GHGG ++L +LL L+I G+RLA PGEF+++AFLN+K
Sbjct: 62 ALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQID---GIRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
DL Q EAI DLI+A++E AA+SA+ SL G+FSK +N L+D +I LRT +E S DFP+E
Sbjct: 119 FDLAQAEAIADLIDATSEQAARSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE 178
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + N L I +L + + K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 179 IDFLADGKIEAN-LRGIINQLEDVRAEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGR 237
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D +EVE+IGI R W E
Sbjct: 238 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT-------DEVERIGISRAWTE 290
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D II + D+ + + K + + P +PV V NKID +G Q + + +
Sbjct: 291 IEQADRIILMLDSSDPESVNLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGY 350
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G+ LLR L + IE +LAR RH+ +L +A +L + +
Sbjct: 351 QIISLSAQTHDGVKLLREHLKQAMGFQTGIEGG-FLARRRHLDALEKAAEHLQIGLVQLT 409
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 410 EFHAG-----ELLAEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452
>gi|343517879|ref|ZP_08754875.1| tRNA modification GTPase TrmE [Haemophilus pittmaniae HK 85]
gi|343394730|gb|EGV07277.1| tRNA modification GTPase TrmE [Haemophilus pittmaniae HK 85]
Length = 452
Score = 355 bits (911), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 195/468 (41%), Positives = 280/468 (59%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + E V K K PR A Y F + ++D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPLASQVAEAVLGKCPK---PRMADYLPFKDSDGTVLDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK PHS+TGEDV+EL GHGG ++L +LL L + G+RLA PGEF+++AFLN+K
Sbjct: 62 AVYFKGPHSFTGEDVLELQGHGGQVVLDLLLKRILNVD---GIRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AA+SA+ SL G+FS IN L+D +I LRT +E + DFP+E
Sbjct: 119 LDLAQAEAIADLIDATSEQAARSALKSLQGEFSNKINALVDSVIYLRTYVEAAIDFPDEE 178
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + N L I ++L + ++ K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 179 IDFLADGKIEAN-LRGIIEQLDGVRREAKQGSILREGMKVVIAGRPNAGKSSLLNALAGR 237
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG +++ +EVE+IGI R W E
Sbjct: 238 EAAIVTDIAGTTRDVLREHIHLDGMPLHIIDTAG-------LREATDEVERIGISRAWHE 290
Query: 308 LKNSDIIIYV---QDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D II + D ++ + P IP+ V NKID SG + + +
Sbjct: 291 IEQADRIILMLDSSDPDSQDSESLRREFLAKLPSAIPLTVVRNKIDLSGESVGLTESDGV 350
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
A I LSA G++LLR L + QT +LAR RH+ +L +A +L + +
Sbjct: 351 AVIRLSAQTLQGVDLLREHLKQAM-GFQTGMEGGFLARRRHLEALQKAAEHLQIGLLQLT 409
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AE+LR LS I G+ T +DLL NIFS FCIGK
Sbjct: 410 EFHAG-----ELLAEELRLVQSALSEITGQFTADDLLGNIFSSFCIGK 452
>gi|319945013|ref|ZP_08019275.1| tRNA modification GTPase TrmE [Lautropia mirabilis ATCC 51599]
gi|319741583|gb|EFV94008.1| tRNA modification GTPase TrmE [Lautropia mirabilis ATCC 51599]
Length = 518
Score = 355 bits (911), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 202/526 (38%), Positives = 287/526 (54%), Gaps = 73/526 (13%)
Query: 7 PIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCK--KTKKQLKPRFATYSSFFCKNNNIID 64
PI IAT PG+G +G++R+S I + +++L R A Y F + ID
Sbjct: 6 PICAIATAPGQGAIGVVRVSAPEPDIITALAADILGPERRLVARKAAYGPFLAADAQPID 65
Query: 65 KGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFL 124
GL ++F APHSYTGE ++EL GHGGP++ +LL L++G + G+RLA PGEFT+RAFL
Sbjct: 66 YGLALWFPAPHSYTGEHILELQGHGGPVVQQILLRRVLQVGAAFGIRLAEPGEFTERAFL 125
Query: 125 NNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFP 184
N+KLDL+Q EA+ DLI ASTE AA+SA SL G FS+ I+ L ++L+ LR L+E + DFP
Sbjct: 126 NDKLDLVQAEAVADLIEASTEQAARSATRSLQGVFSRQIDDLAEQLLTLRMLVEATLDFP 185
Query: 185 EENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSL 244
EE + L K D L +I L ++ + A +R GLNVVL G PNVGKSSL N+L
Sbjct: 186 EEEIDF-LQKADAAGRLARIDDTLRRLFDTAQSGARLRQGLNVVLTGAPNVGKSSLLNAL 244
Query: 245 VGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304
G++VAIVT IAGTTRD++ + I I + DTAG+ D + + VEKIGI+RT
Sbjct: 245 AGAEVAIVTPIAGTTRDRVIEQISIEGVPINLIDTAGLRDTD-------DPVEKIGIQRT 297
Query: 305 WVELKNSDIIIYVQD----ARYDKH----------------------------------- 325
W E++ +D++++++ AR D++
Sbjct: 298 WAEIEKADVVVHLRAADELAREDENQTPGETGQGNGKKAVPAIIPDAGTGSSPEQRSGQG 357
Query: 326 ---------TDFDKKIIKNFPMNIPVIYVWNKID--------YSGHQKNINYKNNIAN-- 366
+ + I P + + V NKID SG + + A
Sbjct: 358 QTGSAPLDISRLEAAIEARVPASARRLTVINKIDLVEGEGQLASGMSDGAPHAQSSATEI 417
Query: 367 IYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQS 426
+ LSA GI R LLD I Q + ++ARERH+ +L+EA +L A + ++
Sbjct: 418 LRLSARTGQGIEAFRRKLLD-IAGFQPGQEGVFIARERHLQALSEALSHLQNARQHVSLG 476
Query: 427 EKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ L+L AE+LR H+ L I G T +DLL IFS+FCIGK
Sbjct: 477 ----DQALDLFAEELRLAHQALGRITGAVTADDLLGVIFSRFCIGK 518
>gi|354721457|ref|ZP_09035672.1| tRNA modification GTPase TrmE [Enterobacter mori LMG 25706]
Length = 454
Score = 355 bits (911), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 195/475 (41%), Positives = 283/475 (59%), Gaps = 25/475 (5%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKAREVAEAVLGKLPK---PRYADYLPFKDTDGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 58 TLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIAKPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNQVMNDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I + I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHTDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + I P +P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPDFIARLPAKLPITVVRNKADVTGETLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNE-ANYYLS 417
+ N + I LSA G++ LRN L + ++E +LAR RH+ +L E AN+ +
Sbjct: 347 SDVNGHSLIRLSARTGEGVDDLRNHLKQSMGFDTSMEGG-FLARRRHLQALEEAANHLVQ 405
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++I EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLIGAWAG------ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|421814758|ref|ZP_16250458.1| tRNA modification GTPase TrmE [Escherichia coli 8.0416]
gi|408599117|gb|EKK73041.1| tRNA modification GTPase TrmE [Escherichia coli 8.0416]
Length = 454
Score = 355 bits (911), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 284/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +
Sbjct: 1 MSDNDTIVAQATPPGRGGVGILRISGFIAREVAETVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + + I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHALIRLSAKTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|365102345|ref|ZP_09332646.1| tRNA modification GTPase mnmE [Citrobacter freundii 4_7_47CFAA]
gi|363646073|gb|EHL85321.1| tRNA modification GTPase mnmE [Citrobacter freundii 4_7_47CFAA]
Length = 454
Score = 355 bits (911), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 195/474 (41%), Positives = 282/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNSVISDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARLPAKLPITVVRNKADITGETLGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + + LSA G+++LRN L + +E +LAR RH+ +L EA +L
Sbjct: 347 SEVNGHSLVRLSARTGEGVDVLRNHLKQSMGFETNMEGG-FLARRRHLQALAEAAEHLEQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+S+ EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 -----GKSQLLGAWAGELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|334121938|ref|ZP_08495981.1| tRNA modification GTPase TrmE [Enterobacter hormaechei ATCC 49162]
gi|333392520|gb|EGK63622.1| tRNA modification GTPase TrmE [Enterobacter hormaechei ATCC 49162]
Length = 454
Score = 355 bits (910), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 196/475 (41%), Positives = 282/475 (59%), Gaps = 25/475 (5%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKAREVAEAVLGKLPK---PRYADYLPFKDADGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 58 PLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIAKPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNQVMNDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + I P +P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPDFIARLPAKLPITVVRNKADVTGETLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + I LSA G+ LRN L + ++E +LAR RH+ +L EA +L
Sbjct: 347 SDVNGHSLIRLSARTGEGVEDLRNHLKQSMGFDTSMEGG-FLARRRHLQALEEAARHLEQ 405
Query: 419 A-IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++I EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLIGAWAG------ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|392423384|ref|YP_006459988.1| tRNA modification GTPase TrmE [Pseudomonas stutzeri CCUG 29243]
gi|390985572|gb|AFM35565.1| tRNA modification GTPase TrmE [Pseudomonas stutzeri CCUG 29243]
Length = 455
Score = 355 bits (910), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 190/469 (40%), Positives = 284/469 (60%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I +AT PGRGGVGI+R+SG +I + T ++ PR A Y +F + +ID+GL
Sbjct: 8 IAAVATAPGRGGVGIVRVSGPRSKAIAITL---TGREPTPRHAHYGAFHADDGEVIDEGL 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+++F PHS+TGEDV+EL GHGGP+++ MLL C+E+G +RLA PGEF++RAFLN+K
Sbjct: 65 LLFFPGPHSFTGEDVLELQGHGGPVVMDMLLQRCVELG----VRLARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+ AA++A+ SL G+FS+ ++ L +KLI LR +E + DFPEE
Sbjct: 121 LDLAQAEAIADLIEASSAQAARNAVRSLQGEFSRRVHQLTEKLIQLRIYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + + +L +K +L ++++ + AL+R+G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDFLADGH-VLAQLDAVKAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ + DTAG+ D ++VE+IG++R
Sbjct: 240 EAAIVTDIAGTTRDVLREHILIDGMPLHVVDTAGLRDTE-------DQVERIGVQRALSA 292
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNN- 363
+ +D ++ + DA + D + +++ P V + NK D SG +I++ +N
Sbjct: 293 IGEADRVLLMVDASAPEAQDPLALWPEFLESNPAPNRVTLIRNKADLSGEPISIHFDDNG 352
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
A + L A GI LLR L + QT E+S + AR RH+ +L A+ YL
Sbjct: 353 QATLSLCARSGEGIELLREHLKHCMGYEQTAENS-FSARRRHLDALRLADQYLEH----- 406
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 407 GHAQLTLAGAGELLAEDLRLAQQALGEITGAFSSDDLLGRIFSSFCIGK 455
>gi|153835787|ref|ZP_01988454.1| tRNA modification GTPase TrmE [Vibrio harveyi HY01]
gi|148867486|gb|EDL66856.1| tRNA modification GTPase TrmE [Vibrio harveyi HY01]
Length = 453
Score = 355 bits (910), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 195/469 (41%), Positives = 284/469 (60%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG ++ + T K LKPR+A Y F ++ ++D+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGPKAN---QVALEVTGKTLKPRYAEYLPFQAEDGTVLDQGV 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF PHS+TGEDV+EL GHGGP+++ ML+ L I G+R A PGEF++RAFLN+K
Sbjct: 63 ALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILGID---GVRAARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FS+ I L++ LI+LR +E + DFPEE
Sbjct: 120 MDLTQAEAIADLIDASSEEAAKSALQSLQGQFSQRIQTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDFLADGK-VSGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + +EVEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVEKIGIERAWDE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQKNINYKNN 363
+ +D ++++ D TD K I +F P +I + + NK D +G + I + N+
Sbjct: 292 IAQADRVLFMVDGTTTDATD-PKDIWPDFVDRLPNSIGMTVIRNKADQTGEEMGICHVND 350
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA G++ LR L + + + E ++AR RH+ +L A +L I
Sbjct: 351 PTLIRLSAKTGAGVDALRTHLKECMGFSGNTEGG-FMARRRHLDALERAAQHLQ-----I 404
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 405 GQEQLEGYMAGEILAEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|422831157|ref|ZP_16879306.1| tRNA modification GTPase mnmE [Escherichia coli B093]
gi|371602570|gb|EHN91263.1| tRNA modification GTPase mnmE [Escherichia coli B093]
Length = 454
Score = 355 bits (910), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 283/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +
Sbjct: 1 MSDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E A+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQTARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + + I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|205360204|ref|ZP_02835285.2| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|409247530|ref|YP_006888228.1| tRNA modification GTPase mnmE [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|205340459|gb|EDZ27223.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|320088264|emb|CBY98026.1| tRNA modification GTPase mnmE [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
Length = 467
Score = 355 bits (910), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 195/474 (41%), Positives = 282/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F + +
Sbjct: 14 MSHNDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKLPK---PRYADYLPFKDADGS 70
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 71 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 127
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 128 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 187
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 188 DFPDEEIDF-LSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLL 246
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 247 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 299
Query: 302 ERTWVELKNSDIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D I P N+P+ V NK D +G I
Sbjct: 300 ERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGI 359
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + + LSA G+++LRN L + +E +LAR RH+ +L EA +L
Sbjct: 360 SEVNGHSLVRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALAEAAEHLEQ 418
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 419 GKAQLLGAWAG-----ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 467
>gi|425189035|ref|ZP_18586292.1| tRNA modification GTPase TrmE [Escherichia coli FRIK1997]
gi|408100956|gb|EKH33430.1| tRNA modification GTPase TrmE [Escherichia coli FRIK1997]
Length = 454
Score = 355 bits (910), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 283/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +
Sbjct: 1 MSDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EA DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEATADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + + I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHALIRLSAKTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|269103815|ref|ZP_06156512.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Photobacterium
damselae subsp. damselae CIP 102761]
gi|268163713|gb|EEZ42209.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Photobacterium
damselae subsp. damselae CIP 102761]
Length = 455
Score = 355 bits (910), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 193/468 (41%), Positives = 285/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ ATPPGRGGVGIIR+SG E+ ++L+PR+A Y F ++ +D+G+
Sbjct: 8 IVAQATPPGRGGVGIIRVSGPK---AKEVALAVAGRELRPRYAEYLPFKNEDGTALDQGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++FK P+S+TGEDV+EL GHGGP+++ ML+ L + G+R A PGEF++RAF+N+K
Sbjct: 65 ALFFKGPNSFTGEDVLELQGHGGPVLMDMLIRRILTLD---GIRPARPGEFSERAFMNDK 121
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AAKSA SL G FS +N L++ LI LR +E + DFPEE
Sbjct: 122 LDLAQAEAIADLIDASSEEAAKSAFQSLQGAFSTRVNELVESLIYLRMYVEAAIDFPEEE 181
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L +I +L + ++ + +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 182 IDF-LSDGKVSGDLNRIIDRLEAVRKEANQGSIMREGMKVVIAGRPNAGKSSLLNALSGK 240
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
D AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E
Sbjct: 241 DSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWDE 293
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
+ +D ++++ D TD + I+ P N+ + + NKI+ +G Q I + NN
Sbjct: 294 ILQADRVLFMVDGTTTDATDPKEIWPDFIERLPENMGLTVIRNKIELTGEQAGICHVNNP 353
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G++ LR L + + + T E ++AR RH+ +L A +L I
Sbjct: 354 TLIRLSALTGEGVDSLRQHLKECMGFSGTTEGG-FMARRRHLDALERAAEHLE-----IG 407
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+S+ E++AE+LR + LS I G+ T++DLL IF+ FCIGK
Sbjct: 408 KSQLEGYMAGEILAEELRLAQQHLSEITGEFTSDDLLGRIFTSFCIGK 455
>gi|205829165|sp|A8ACL8.2|MNME_CITK8 RecName: Full=tRNA modification GTPase MnmE
Length = 454
Score = 355 bits (910), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 195/474 (41%), Positives = 282/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKAREVAEAVLGKLPK---PRYADYLPFKDADGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNGVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + I P +P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPDFIARLPAKLPITVVRNKADITGETLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + + LSA G+++LRN L + +E +LAR RH+ +L EA +L
Sbjct: 347 SEVNGHSLVRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALAEAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+S+ EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 -----GKSQLLGAWAGELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|156972770|ref|YP_001443677.1| tRNA modification GTPase TrmE [Vibrio harveyi ATCC BAA-1116]
gi|388601699|ref|ZP_10160095.1| tRNA modification GTPase TrmE [Vibrio campbellii DS40M4]
gi|166234831|sp|A7N0X8.1|MNME_VIBHB RecName: Full=tRNA modification GTPase MnmE
gi|156524364|gb|ABU69450.1| hypothetical protein VIBHAR_00435 [Vibrio harveyi ATCC BAA-1116]
Length = 453
Score = 355 bits (910), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 195/469 (41%), Positives = 284/469 (60%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG ++ + T K LKPR+A Y F ++ ++D+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGPKAN---QVALEVTGKTLKPRYAEYLPFQAEDGTVLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF PHS+TGEDV+EL GHGGP+++ ML+ L I G+R A PGEF++RAFLN+K
Sbjct: 63 ALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILGID---GVRAARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FS+ I L++ LI+LR +E + DFPEE
Sbjct: 120 MDLTQAEAIADLIDASSEEAAKSALQSLQGQFSQRIQTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDFLADGK-VSGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + +EVEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVEKIGIERAWDE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQKNINYKNN 363
+ +D ++++ D TD K I +F P +I + + NK D +G + I + N+
Sbjct: 292 IAQADRVLFMVDGTTTDATD-PKDIWPDFVDRLPNSIGMTVIRNKADQTGEEMGICHVND 350
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA G++ LR L + + + E ++AR RH+ +L A +L I
Sbjct: 351 PTLIRLSAKTGAGVDALRTHLKECMGFSGNTEGG-FMARRRHLDALERAAQHLQ-----I 404
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 405 GQEQLEGYMAGEILAEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|416073364|ref|ZP_11584207.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|444337951|ref|ZP_21151864.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
gi|348007318|gb|EGY47637.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|443545957|gb|ELT55682.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
Length = 451
Score = 355 bits (910), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 196/468 (41%), Positives = 280/468 (59%), Gaps = 24/468 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + + V K K PR A Y F + ++D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPKAIEVAQAVLGKCPK---PRMADYLPFKEADGTVLDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK P+S+TGEDV+EL GHGG ++L +LL L I G+RLA PGEF+++AFLN+K
Sbjct: 62 ALYFKGPNSFTGEDVLELQGHGGQVVLDLLLKRILRIE---GIRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AA+SA+ SL G+FS +N L+D +I LRT +E + DFP+E
Sbjct: 119 LDLAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEE 178
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L L I +L K+ + K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 179 IDF-LADGKIEGHLNDIIAQLDKVRAEAKQGSILREGMKVVIAGRPNAGKSSLLNTLAGR 237
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D +EVE+IGI R W E
Sbjct: 238 EAAIVTDIAGTTRDVLREHIHLDGMPLHIIDTAGLRDAT-------DEVERIGISRAWHE 290
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D I+ + D+ D D K + + P NIP+ + NK D SG + + ++
Sbjct: 291 IEQADRILLMLDS-SDTEQDLAKVRSEFLAKLPNNIPLTIIRNKADLSGEAERLYEEDGY 349
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
+ LSA + G++LLR+ L + QT +LAR RH+ +L A +L +
Sbjct: 350 TVVNLSAKTQQGVDLLRDHLKQAM-GYQTGMEGGFLARRRHLEALELAARHLQMGHVQLT 408
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 409 QFHAG-----ELLAEELRMVQSALSEITGQFTSDDLLTNIFSSFCIGK 451
>gi|387121632|ref|YP_006287515.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|415756956|ref|ZP_11481210.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|416045382|ref|ZP_11575351.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|416067982|ref|ZP_11582570.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|429734831|ref|ZP_19268831.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans Y4]
gi|347995371|gb|EGY36555.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|348001458|gb|EGY42200.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|348655635|gb|EGY71080.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|385876124|gb|AFI87683.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|429151101|gb|EKX93985.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans Y4]
Length = 451
Score = 355 bits (910), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 196/468 (41%), Positives = 280/468 (59%), Gaps = 24/468 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + + V K K PR A Y F + ++D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPKAIEVAQAVLGKCPK---PRMADYLPFKEADGTVLDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK P+S+TGEDV+EL GHGG ++L +LL L I G+RLA PGEF+++AFLN+K
Sbjct: 62 ALYFKGPNSFTGEDVLELQGHGGQVVLDLLLKRILRIE---GIRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AA+SA+ SL G+FS +N L+D +I LRT +E + DFP+E
Sbjct: 119 LDLAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEE 178
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L L I +L K+ + K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 179 IDF-LADGKIEGHLNDIIAQLDKVRAEAKQGSILREGMKVVIAGRPNAGKSSLLNTLAGR 237
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D +EVE+IGI R W E
Sbjct: 238 EAAIVTDIAGTTRDVLREHIHLDGMPLHIIDTAGLRDAT-------DEVERIGISRAWHE 290
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D I+ + D+ D D K + + P NIP+ + NK D SG + + ++
Sbjct: 291 IEQADRILLMLDS-SDTEQDLTKVRSEFLAKLPNNIPLTIIRNKADLSGEAERLYEEDGY 349
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
+ LSA + G++LLR+ L + QT +LAR RH+ +L A +L +
Sbjct: 350 TVVNLSAKTQQGVDLLRDHLKQAM-GYQTGMEGGFLARRRHLEALELAARHLQMGHVQLT 408
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 409 QFHAG-----ELLAEELRMVQSALSEITGQFTSDDLLTNIFSSFCIGK 451
>gi|392543447|ref|ZP_10290584.1| tRNA modification GTPase TrmE [Pseudoalteromonas piscicida JCM
20779]
Length = 454
Score = 355 bits (910), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 197/475 (41%), Positives = 285/475 (60%), Gaps = 24/475 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M+ +++ I AT PGRGGVGIIR+SG + E++ K K R+A Y F
Sbjct: 1 MIAQDT-IAAQATAPGRGGVGIIRVSGSKAREVAELILGKCPK---TRYAEYLPFNTLAG 56
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+D+G+ ++F+ P+S+TGEDV+EL GHGGP++L MLL +I + +RLA PGEF++
Sbjct: 57 EQLDQGIALFFQGPNSFTGEDVLELQGHGGPVVLDMLLKEISQIEQ---VRLAKPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAF+N+KLDL Q EAI DLINA++E AAKSA+ SL G FSK IN L++K+I+LR +E +
Sbjct: 114 RAFMNDKLDLTQAEAIADLINATSEQAAKSALHSLQGDFSKHINTLVEKVIHLRMYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFP+E + L+ +L I ++L ++ +Q K+ +++R G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPDEEIDF-LSDGKVSGDLEAIIQQLAEVRKQAKQGSIMREGMRVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D K VE+IG
Sbjct: 233 LNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDSPDK-------VEQIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
IER W E+ +D ++++ D + TD K I+ P + + + NK+D SG
Sbjct: 286 IERAWEEILGADHVLFMVDGTETQETDPAKIWPDFIEQLPQGMEITVIRNKVDLSGEAVG 345
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
+ I LSA GI+LLR L I T E ++AR RH+ +L A +L
Sbjct: 346 ATTSDGHTLIRLSAKDIQGIDLLREHLKACIGFTGATEGG-FMARRRHLDALEHAAEHLE 404
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
I Q++ E++AE+LR + L+ I G+ T++DLL IFS FCIGK
Sbjct: 405 -----IGQTQLEMHIAGEILAEELRLTQQYLNEITGEFTSDDLLGKIFSSFCIGK 454
>gi|432566098|ref|ZP_19802654.1| tRNA modification GTPase mnmE [Escherichia coli KTE51]
gi|431089666|gb|ELD95472.1| tRNA modification GTPase mnmE [Escherichia coli KTE51]
Length = 454
Score = 355 bits (910), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 283/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +
Sbjct: 1 MSDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + + I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHVLIRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|387771313|ref|ZP_10127479.1| tRNA modification GTPase TrmE [Pasteurella bettyae CCUG 2042]
gi|386902518|gb|EIJ67358.1| tRNA modification GTPase TrmE [Pasteurella bettyae CCUG 2042]
Length = 453
Score = 354 bits (909), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 198/474 (41%), Positives = 287/474 (60%), Gaps = 24/474 (5%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
+TK + I+ ATP GRGGVGI+R+SG + + V K +LKPR A Y F ++
Sbjct: 1 MTKET-IVAQATPIGRGGVGILRVSGPLSTLVAQAVVGK---ELKPRMANYLPFKDEDGT 56
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
I+D+G+ ++FK P+S+TGEDV+E GHGG I+L +LL L++ G+RLA PGEF+++
Sbjct: 57 ILDQGIALFFKGPNSFTGEDVVEFQGHGGQIVLDLLLKRILQVK---GVRLARPGEFSEQ 113
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+A++E AA+SA+ SL G+FS ++ L+D +I LRT +E +
Sbjct: 114 AFLNDKLDLAQAEAIADLIDATSEQAARSALKSLQGEFSHKVHELVDAVIYLRTYVEAAI 173
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L L I ++L ++ + K+ +++R G+ VV+ G+PN GKSSL
Sbjct: 174 DFPDEEIDF-LADGKIEGHLKDIIEQLDRVRLEAKQGSILREGMKVVIAGRPNAGKSSLL 232
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D +EVE+IGI
Sbjct: 233 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT-------DEVERIGI 285
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
R W E++ +D +I + D+ + ++ + + P NIPV V NK D SG + +
Sbjct: 286 TRAWNEIEQADRVILMLDSTDSDSQNLEQAKSEFLSKLPKNIPVTIVRNKSDLSGEVEKL 345
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ I LSA + G++LLR L + QT +LAR RH+ +L A +L
Sbjct: 346 TEQEGFTVISLSAHTQQGMDLLREHLKQSM-GYQTSSEGGFLARRRHLEALAHAAKHLQI 404
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ Q EL+AE+LR + LS I GK T++DLL NIFS FCIGK
Sbjct: 405 GYMQLTQFHAG-----ELLAEELRMVQDNLSKITGKFTSDDLLGNIFSSFCIGK 453
>gi|423122838|ref|ZP_17110522.1| tRNA modification GTPase mnmE [Klebsiella oxytoca 10-5246]
gi|376392119|gb|EHT04786.1| tRNA modification GTPase mnmE [Klebsiella oxytoca 10-5246]
Length = 454
Score = 354 bits (909), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 283/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKARDVAQAVLGKLPK---PRYADYLPFKDTDGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++R
Sbjct: 58 PLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNGVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D N +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAN-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + I+ P +P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTSAVDPAEIWPDFIERLPAKLPITVVRNKADVTGETLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + I LSA G+++LRN L + +E +LAR RH+ +L+EA +L
Sbjct: 347 SEVNGHSLIRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALSEAASHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLSQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|237729028|ref|ZP_04559509.1| tRNA modification GTPase TrmE [Citrobacter sp. 30_2]
gi|226909650|gb|EEH95568.1| tRNA modification GTPase TrmE [Citrobacter sp. 30_2]
Length = 454
Score = 354 bits (909), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 282/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNSVISDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARLPAKLPITVVRNKADITGETLGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N+ + + LSA G+++LRN L + +E +LAR RH+ +L EA +L
Sbjct: 347 SEVNSHSLVRLSARTGEGVDVLRNHLKQSMGFETNMEGG-FLARRRHLQALAEAAEHLEQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|416284411|ref|ZP_11647257.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Shigella boydii ATCC
9905]
gi|320180048|gb|EFW54990.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Shigella boydii ATCC
9905]
Length = 454
Score = 354 bits (909), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 283/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +
Sbjct: 1 MSDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + + I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N A I LSA G+++L N L + +E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHALIRLSARTGEGVDVLHNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|300896036|ref|ZP_07114596.1| tRNA modification GTPase TrmE, partial [Escherichia coli MS 198-1]
gi|300360060|gb|EFJ75930.1| tRNA modification GTPase TrmE [Escherichia coli MS 198-1]
Length = 462
Score = 354 bits (909), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 193/475 (40%), Positives = 284/475 (59%), Gaps = 23/475 (4%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
+++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F +
Sbjct: 8 IMSDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKLPK---PRYADYLPFKDADG 64
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I LR+A PGEF++
Sbjct: 65 SVLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPD---LRIARPGEFSE 121
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 122 RAFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAA 181
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 182 IDFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSL 240
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IG
Sbjct: 241 LNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIG 293
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
IER W E++ +D ++++ D D + + I P +P+ V NK D +G
Sbjct: 294 IERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG 353
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
++ N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 354 MSEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQ 412
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 413 QGKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 462
>gi|455645341|gb|EMF24401.1| tRNA modification GTPase TrmE [Citrobacter freundii GTC 09479]
Length = 454
Score = 354 bits (909), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 281/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 TLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNSVISDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARLPAKLPITVVRNKADITGETLGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + + LSA G+++LRN L + +E +LAR RH+ +L EA +L
Sbjct: 347 SEVNGHSLVRLSARTGEGVDVLRNHLKQSMGFETNMEGG-FLARRRHLQALAEAAEHLEQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|392981405|ref|YP_006479993.1| tRNA modification GTPase TrmE [Enterobacter cloacae subsp.
dissolvens SDM]
gi|392327338|gb|AFM62291.1| tRNA modification GTPase TrmE [Enterobacter cloacae subsp.
dissolvens SDM]
Length = 454
Score = 354 bits (909), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 196/475 (41%), Positives = 282/475 (59%), Gaps = 25/475 (5%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKAREVAEAVLGKLPK---PRYADYLPFKDTDGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 58 PLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIAKPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + I P +P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPDFIARLPAKLPITVVRNKADVTGETLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + I LSA G++ LRN L + ++E +LAR RH+ +L EA +L
Sbjct: 347 SNVNGHSLIRLSARTGEGVDDLRNHLKQSMGFDTSMEGG-FLARRRHLQALEEAARHLEQ 405
Query: 419 A-IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++I EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLIGAWAG------ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|395230773|ref|ZP_10409073.1| tRNA modification GTPase mnmE [Citrobacter sp. A1]
gi|424729085|ref|ZP_18157688.1| trna modification gtpase [Citrobacter sp. L17]
gi|394715534|gb|EJF21348.1| tRNA modification GTPase mnmE [Citrobacter sp. A1]
gi|422896193|gb|EKU35976.1| trna modification gtpase [Citrobacter sp. L17]
Length = 454
Score = 354 bits (909), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 281/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 TLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNSVISDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARLPAKLPITVVRNKADITGETLGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + + LSA G+++LRN L + +E +LAR RH+ +L EA +L
Sbjct: 347 SKVNGHSLVRLSARTGEGVDVLRNHLKQSMGFETNMEGG-FLARRRHLQALAEAAEHLEQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|420376853|ref|ZP_14876552.1| tRNA modification GTPase TrmE, partial [Shigella flexneri 1235-66]
gi|391300079|gb|EIQ58006.1| tRNA modification GTPase TrmE, partial [Shigella flexneri 1235-66]
Length = 448
Score = 354 bits (909), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 193/468 (41%), Positives = 281/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +++D+G+
Sbjct: 1 IVAQATPPGRGGVGILRISGFKAREVAETVLGKLPK---PRYADYLPFKDADGSVLDQGI 57
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++RAFLN+K
Sbjct: 58 ALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSERAFLNDK 114
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E
Sbjct: 115 LDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE 174
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G
Sbjct: 175 IDF-LSDGKIEAQLNDVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 233
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E
Sbjct: 234 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWQE 286
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D D + + I P +P+ V NK D +G ++ N
Sbjct: 287 IEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGH 346
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
A I LSA G+++LRN L + +E +LAR RH+ +L +A +L +
Sbjct: 347 ALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQQGKAQLL 405
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 448
>gi|444426986|ref|ZP_21222385.1| tRNA modification GTPase TrmE [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444239753|gb|ELU51310.1| tRNA modification GTPase TrmE [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 453
Score = 354 bits (909), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 195/469 (41%), Positives = 284/469 (60%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG ++ + T K LKPR+A Y F ++ ++D+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGPKAN---QVALEVTGKTLKPRYAEYLPFQAEDGTVLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF PHS+TGEDV+EL GHGGP+++ ML+ L I G+R A PGEF++RAFLN+K
Sbjct: 63 ALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILGID---GVRAARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FS+ I L++ LI+LR +E + DFPEE
Sbjct: 120 MDLTQAEAIADLIDASSEEAAKSALQSLQGQFSQRIQTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDFLADGK-VSGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + +EVEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVEKIGIERAWDE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQKNINYKNN 363
+ +D ++++ D TD K I +F P +I + + NK D +G + I + N+
Sbjct: 292 IAQADRVLFMVDGTTTDATD-PKDIWPDFVDRLPNSIGMTVIRNKADQTGEEMGICHVND 350
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA G++ LR L + + + E ++AR RH+ +L A +L I
Sbjct: 351 PTLIRLSAKTGAGMDALRTHLKECMGFSGNTEGG-FMARRRHLDALERAAQHLQ-----I 404
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 405 GQEQLEGYMAGEILAEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|260912765|ref|ZP_05919251.1| tRNA modification GTPase TrmE [Pasteurella dagmatis ATCC 43325]
gi|260633143|gb|EEX51308.1| tRNA modification GTPase TrmE [Pasteurella dagmatis ATCC 43325]
Length = 476
Score = 354 bits (909), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 196/470 (41%), Positives = 284/470 (60%), Gaps = 27/470 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + V K K PR A Y F + ++D+G+
Sbjct: 29 IVAQATAPGRGGIGILRVSGPKAVEVANTVLGKCPK---PRMADYLPFKDLDGTVLDQGI 85
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFKAP+S+TGEDV+EL GHGG ++L +LL L+I G+RLA PGEF+++AFLN+K
Sbjct: 86 ALYFKAPNSFTGEDVLELQGHGGQVVLDLLLKRILQID---GIRLARPGEFSEQAFLNDK 142
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AA+SA+ SL G+FS +N L+D +I LRT +E + DFP+E
Sbjct: 143 LDLAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEE 202
Query: 188 QELILNK--NDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLV 245
+ + + N++I ++L K+ + K+ +++R G+ VV+ G+PN GKSSL N+L
Sbjct: 203 IDFLADGKIEAHLNDII---EQLNKVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALA 259
Query: 246 GSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTW 305
G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI R W
Sbjct: 260 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREATDEVERIGIVRAW 312
Query: 306 VELKNSDIIIYVQDARYDKHTDFD---KKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKN 362
E++ +D I+ + D+ + + D + + P IPV V NK D SG + I +
Sbjct: 313 SEIEQADRILLMLDSTEQDNQNLDNVWPEFLAKLPSQIPVTIVRNKADLSGEAEGIQENS 372
Query: 363 NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKI 422
+ LSA + G+ LLR L + +E +LAR RH+ +L +A +L
Sbjct: 373 GYTIVTLSAKTQQGVELLREHLKQSMGYQTNMEGG-FLARRRHLDALEKAAEHLQLGHVQ 431
Query: 423 INQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ Q EL+AE+LR E LS I G+ T++DLL NIFS FCIGK
Sbjct: 432 LTQFYAG-----ELLAEELRMVQEHLSEITGQFTSDDLLGNIFSSFCIGK 476
>gi|397660750|ref|YP_006501452.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Klebsiella oxytoca
E718]
gi|394348732|gb|AFN34853.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Klebsiella oxytoca
E718]
Length = 454
Score = 354 bits (909), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 284/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F + +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKARDVAQAVLGKLPK---PRYADYLPFKDSDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSTRVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D N +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAN-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D TD I P N+P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDATDPADIWPDFIARLPKNLPITVVRNKADITGETLGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N+ + + LSA G+++LRN L + +E +LAR RH+ +L++A +L
Sbjct: 347 IEVNDHSLVRLSARTGEGVDVLRNHLKQSMGFETNMEGG-FLARRRHLQALSDAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|307246406|ref|ZP_07528481.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307255391|ref|ZP_07537200.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307259841|ref|ZP_07541558.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|306852686|gb|EFM84916.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306861648|gb|EFM93633.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306866087|gb|EFM97958.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
Length = 452
Score = 354 bits (909), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 200/472 (42%), Positives = 290/472 (61%), Gaps = 31/472 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKT-KKQLKPRFATYSSFFCKNNNIIDKG 66
I+ ATP GRGGVGI+R+SG + + V K+ K+LKPR A Y F ++ ++D+G
Sbjct: 5 IVAQATPIGRGGVGILRISG----PLAQEVAKEVLGKELKPRLANYLPFKEQDGTVLDQG 60
Query: 67 LVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNN 126
+ ++FKAP+S+TGEDV+EL GHGG +IL +LL L I G+R+A GEF+++AFLN+
Sbjct: 61 IALFFKAPNSFTGEDVLELQGHGGQVILDILLKRILTIK---GIRIARAGEFSEQAFLND 117
Query: 127 KLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEE 186
KLDL Q EAI DLI+A++E AA+SA+ SL G+FS IN L+D +I LRT +E + DFP+E
Sbjct: 118 KLDLAQAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDE 177
Query: 187 NQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVG 246
+ L L I ++L + ++ K+ A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 178 EIDF-LADGKIEGHLNDIIRQLNGVRKEAKQGAILREGMKVVIAGRPNAGKSSLLNALAG 236
Query: 247 SDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWV 306
+ AIVT+IAGTTRD + + I I+ I DTAG+ + N +EVEKIGI+R W
Sbjct: 237 REAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLREAN-------DEVEKIGIQRAWD 289
Query: 307 ELKNSDIIIYVQDARYDKHTDFDKK---IIKNFPMNIPVIYVWNKIDYSGHQKNINYKNN 363
E++ +D ++ + D+ F + + P NIPV + NK+D SG + + +
Sbjct: 290 EIEQADHVLLMIDSTEQTAEAFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDG 349
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP---YLARERHIHSLNEANYYLSCAI 420
I LSA ++G++LLR L +K+ +SS +LAR RH+ +L A +L
Sbjct: 350 FTLIRLSAQTKVGVDLLREHL----KKSMGYQSSTEGGFLARRRHLQALETAAEHLERGH 405
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ Q EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 406 IQLTQFFAG-----ELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 452
>gi|421780982|ref|ZP_16217455.1| tRNA modification GTPase TrmE [Serratia plymuthica A30]
gi|407756654|gb|EKF66764.1| tRNA modification GTPase TrmE [Serratia plymuthica A30]
Length = 455
Score = 354 bits (909), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 192/475 (40%), Positives = 283/475 (59%), Gaps = 23/475 (4%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M + I+ ATPPGRGGVGI+R+SG+ + + K K PR+A Y F
Sbjct: 1 MSSTTDTIVAQATPPGRGGVGILRISGRGAKDAAQALLGKLPK---PRYADYLPFRDAAG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++
Sbjct: 58 ATLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRVLAL---PGVRIARPGEFSE 114
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI+AS+E AA+SAM SL G FS I+ L++ L +LR +E +
Sbjct: 115 RAFLNDKLDLAQAEAIADLIDASSEQAARSAMNSLQGAFSTRIHQLVEALTHLRIYVEAA 174
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 IDFPDEEIDF-LSDGKIEAQLNGVMASLANVRAEARQGSLLREGMKVVIAGRPNAGKSSL 233
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G D AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IG
Sbjct: 234 LNALAGRDAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIG 286
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
IER W E++ +D ++++ D T+ + + + P ++P+ V NK D +G
Sbjct: 287 IERAWNEIEQADRVLFMVDGTTTAATEPAEIWPEFMARLPHSLPITVVRNKADITGETLG 346
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
+ N + I LSA GI+LLR+ L + T +E +LAR RH+ +L +A +L
Sbjct: 347 MTEVNGHSLIRLSARTGEGIDLLRDHLKQSMGFTSNMEGG-FLARRRHLQALEQAALHLV 405
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 EGKEQLVSAYAG-----ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 455
>gi|323496919|ref|ZP_08101947.1| tRNA modification GTPase TrmE [Vibrio sinaloensis DSM 21326]
gi|323317993|gb|EGA70976.1| tRNA modification GTPase TrmE [Vibrio sinaloensis DSM 21326]
Length = 453
Score = 354 bits (909), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 201/469 (42%), Positives = 280/469 (59%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG ++ V KT L+PR+A Y F + ID+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGPLAATVALEVTGKT---LRPRYAEYLPFTATDGTQIDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF PHS+TGEDV+EL GHGGP+++ ML+ L+I G+R A PGEF++RAFLN+K
Sbjct: 63 ALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILDI---PGIRTARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AAKSA+ SL G FS+ I+ L++ LI+LR +E + DFPEE
Sbjct: 120 LDLAQAEAIADLIDASSEEAAKSALQSLQGAFSQRIHTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + Q+ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LADGKVSADLQAIIDNLAAVRQEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + +EVEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVEKIGIERAWDE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQKNINYKNN 363
+ +D ++++ D TD K+I +F P NI + + NK D + I + N+
Sbjct: 292 IAQADRVLFMVDGTTTDATD-PKEIWPDFVDRLPDNIGMTVIRNKADQTNEDLGICHVND 350
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA G+ LRN L + + E ++AR RH+ +L A +L I
Sbjct: 351 PTLIRLSAKTGQGVESLRNHLKECMGFAGGNEGG-FMARRRHLEALERAAEHLD-----I 404
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + LS I G+ +++DLL IFS FCIGK
Sbjct: 405 GQQQLEGYMAGEILAEELRIAQQHLSEITGEFSSDDLLGRIFSSFCIGK 453
>gi|218707353|ref|YP_002414872.1| tRNA modification GTPase TrmE [Escherichia coli UMN026]
gi|293407346|ref|ZP_06651268.1| tRNA modification GTPase mnmE [Escherichia coli FVEC1412]
gi|298383087|ref|ZP_06992682.1| tRNA modification GTPase mnmE [Escherichia coli FVEC1302]
gi|417588856|ref|ZP_12239618.1| tRNA modification GTPase TrmE [Escherichia coli STEC_C165-02]
gi|419934272|ref|ZP_14451411.1| tRNA modification GTPase TrmE [Escherichia coli 576-1]
gi|432355753|ref|ZP_19599014.1| tRNA modification GTPase mnmE [Escherichia coli KTE2]
gi|432404120|ref|ZP_19646863.1| tRNA modification GTPase mnmE [Escherichia coli KTE26]
gi|432428388|ref|ZP_19670868.1| tRNA modification GTPase mnmE [Escherichia coli KTE181]
gi|432463087|ref|ZP_19705218.1| tRNA modification GTPase mnmE [Escherichia coli KTE204]
gi|432478082|ref|ZP_19720067.1| tRNA modification GTPase mnmE [Escherichia coli KTE208]
gi|432519936|ref|ZP_19757115.1| tRNA modification GTPase mnmE [Escherichia coli KTE228]
gi|432540103|ref|ZP_19776993.1| tRNA modification GTPase mnmE [Escherichia coli KTE235]
gi|432633668|ref|ZP_19869585.1| tRNA modification GTPase mnmE [Escherichia coli KTE80]
gi|432643320|ref|ZP_19879141.1| tRNA modification GTPase mnmE [Escherichia coli KTE83]
gi|432668313|ref|ZP_19903882.1| tRNA modification GTPase mnmE [Escherichia coli KTE116]
gi|432772495|ref|ZP_20006806.1| tRNA modification GTPase mnmE [Escherichia coli KTE54]
gi|432889455|ref|ZP_20102792.1| tRNA modification GTPase mnmE [Escherichia coli KTE158]
gi|432915390|ref|ZP_20120645.1| tRNA modification GTPase mnmE [Escherichia coli KTE190]
gi|433020976|ref|ZP_20209053.1| tRNA modification GTPase mnmE [Escherichia coli KTE105]
gi|433055347|ref|ZP_20242501.1| tRNA modification GTPase mnmE [Escherichia coli KTE122]
gi|433070084|ref|ZP_20256847.1| tRNA modification GTPase mnmE [Escherichia coli KTE128]
gi|433160877|ref|ZP_20345691.1| tRNA modification GTPase mnmE [Escherichia coli KTE177]
gi|433180594|ref|ZP_20364966.1| tRNA modification GTPase mnmE [Escherichia coli KTE82]
gi|254811482|sp|B7NF24.1|MNME_ECOLU RecName: Full=tRNA modification GTPase MnmE
gi|218434450|emb|CAR15378.1| GTPase [Escherichia coli UMN026]
gi|291425637|gb|EFE98673.1| tRNA modification GTPase mnmE [Escherichia coli FVEC1412]
gi|298276923|gb|EFI18441.1| tRNA modification GTPase mnmE [Escherichia coli FVEC1302]
gi|345331855|gb|EGW64314.1| tRNA modification GTPase TrmE [Escherichia coli STEC_C165-02]
gi|388409442|gb|EIL69733.1| tRNA modification GTPase TrmE [Escherichia coli 576-1]
gi|430872169|gb|ELB95784.1| tRNA modification GTPase mnmE [Escherichia coli KTE2]
gi|430922625|gb|ELC43373.1| tRNA modification GTPase mnmE [Escherichia coli KTE26]
gi|430950617|gb|ELC69846.1| tRNA modification GTPase mnmE [Escherichia coli KTE181]
gi|430985472|gb|ELD02072.1| tRNA modification GTPase mnmE [Escherichia coli KTE204]
gi|431001939|gb|ELD17509.1| tRNA modification GTPase mnmE [Escherichia coli KTE208]
gi|431048188|gb|ELD58173.1| tRNA modification GTPase mnmE [Escherichia coli KTE228]
gi|431066594|gb|ELD75218.1| tRNA modification GTPase mnmE [Escherichia coli KTE235]
gi|431167052|gb|ELE67352.1| tRNA modification GTPase mnmE [Escherichia coli KTE80]
gi|431177169|gb|ELE77105.1| tRNA modification GTPase mnmE [Escherichia coli KTE83]
gi|431197358|gb|ELE96210.1| tRNA modification GTPase mnmE [Escherichia coli KTE116]
gi|431323382|gb|ELG10880.1| tRNA modification GTPase mnmE [Escherichia coli KTE54]
gi|431413337|gb|ELG96127.1| tRNA modification GTPase mnmE [Escherichia coli KTE158]
gi|431434992|gb|ELH16605.1| tRNA modification GTPase mnmE [Escherichia coli KTE190]
gi|431526675|gb|ELI03418.1| tRNA modification GTPase mnmE [Escherichia coli KTE105]
gi|431565522|gb|ELI38603.1| tRNA modification GTPase mnmE [Escherichia coli KTE122]
gi|431578441|gb|ELI51044.1| tRNA modification GTPase mnmE [Escherichia coli KTE128]
gi|431673272|gb|ELJ39499.1| tRNA modification GTPase mnmE [Escherichia coli KTE177]
gi|431697693|gb|ELJ62791.1| tRNA modification GTPase mnmE [Escherichia coli KTE82]
Length = 454
Score = 354 bits (908), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 283/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +
Sbjct: 1 MSDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I LR+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPD---LRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + + I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|340001314|ref|YP_004732198.1| thiophene and furan oxidation protein [Salmonella bongori NCTC
12419]
gi|339514676|emb|CCC32446.1| thiophene and furan oxidation protein [Salmonella bongori NCTC
12419]
Length = 454
Score = 354 bits (908), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 280/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG N + + V K K PR+A Y F +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLNAKEVAQAVLGKLPK---PRYADYLPFNDADGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F PHS+TGEDV+EL GHGGP+IL +LL L I G+R+A PGEF++R
Sbjct: 58 TLDQGIALWFPGPHSFTGEDVLELQGHGGPVILDLLLKRILTI---PGVRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSSRVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNSVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG ++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LRVASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D I P +P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARLPAKLPITVVRNKADITGETLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + + LSA G+++LR+ L + +E +LAR RH+ +L EA +L
Sbjct: 347 SEVNGHSLVRLSARTGEGVDVLRSHLKQSMGFETNMEGG-FLARRRHLQALAEAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|301028501|ref|ZP_07191740.1| tRNA modification GTPase TrmE [Escherichia coli MS 196-1]
gi|299878448|gb|EFI86659.1| tRNA modification GTPase TrmE [Escherichia coli MS 196-1]
Length = 454
Score = 354 bits (908), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 283/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +
Sbjct: 1 MSDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPMILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + + I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHVLIRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|407069491|ref|ZP_11100329.1| tRNA modification GTPase TrmE [Vibrio cyclitrophicus ZF14]
Length = 453
Score = 354 bits (908), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 196/468 (41%), Positives = 281/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG ++ + T K LKPR+A Y F ++ +D+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGP---LATQVALEVTGKTLKPRYAEYLPFKSQDGIELDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF PHS+TGEDV+EL GHGGP+++ ML+ L I G+R A PGEF++RAFLN+K
Sbjct: 63 ALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILTI---TGVRAARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FSK IN L+D LI+LR +E + DFPEE
Sbjct: 120 MDLTQAEAIADLIDASSEEAAKSALQSLQGEFSKRINTLVDSLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + +L I L + Q+ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDFLADGK-VSADLQAIIDNLEAVRQEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + +EVEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVEKIGIERAWEE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
+ +D ++++ D TD + P NI + + NK D + + I + N+
Sbjct: 292 IAQADRVLFMVDGTTTDATDPQDIWPDFVDRLPNNIGMTVIRNKADQTSEELGICHVNDP 351
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G++ LR+ L + + E ++AR RH+ +L A+ +L I
Sbjct: 352 TLIRLSAKTGEGVDALRSHLKECMGFAGGNEGG-FMARRRHLDALERASEHLD-----IG 405
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 406 QQQLEGYMAGEILAEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|419765299|ref|ZP_14291537.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
gi|397741807|gb|EJK89027.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
Length = 454
Score = 354 bits (908), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 195/474 (41%), Positives = 281/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKARDVAQAVLGKLPK---PRYADYLPFNDVDGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 58 PLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGVFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNEVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D N +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAN-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E+ +D ++++ D D + I+ P +P+ V NK D +G I
Sbjct: 287 ERAWQEIAQADRVLFMVDGTTTGAVDPAEIWPDFIERLPAKLPITVVRNKADVTGEALGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + I LSA G+ +LRN L + +E +LAR RH+ +L EA +L
Sbjct: 347 SEVNGHSLIRLSARTGDGVEVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEEAANHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|304313413|ref|YP_003813011.1| tRNA modification GTPase [gamma proteobacterium HdN1]
gi|301799146|emb|CBL47389.1| tRNA modification GTPase [gamma proteobacterium HdN1]
Length = 464
Score = 354 bits (908), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 200/481 (41%), Positives = 285/481 (59%), Gaps = 31/481 (6%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
L +N I ATPPGRGGVGI+RLSG SI +C ++ L+ R A +S FF N
Sbjct: 5 LFRNDTIAAQATPPGRGGVGIVRLSGPEALSIGLAICLRSGV-LQARHAYFSEFFDAAGN 63
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D GL++YF +PHS+TGEDVIEL HGGP ++ L+ + ++G RLA PGEF++R
Sbjct: 64 VLDHGLLLYFPSPHSFTGEDVIELQAHGGPFVISQLMDRAI----TLGARLARPGEFSER 119
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AF N+KLDL Q EAI DLI++ +E AA+SA+ SL G FS IN L++LI LR +E +
Sbjct: 120 AFHNDKLDLAQAEAIADLIDSGSEQAARSAIRSLQGAFSIKINEFLNELIRLRVFVEAAI 179
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFPEE + L+ ++L K+ L I + K+ L++ G+ VVL G+PN GKSSL
Sbjct: 180 DFPEEEIDF-LSDGRVQDQLNKLLAHLDAIFSEAKRGVLLKEGMRVVLAGKPNAGKSSLL 238
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N L G+D AIVT IAGTTRD + + I ++ I+DTAG ++++ +EVE+ GI
Sbjct: 239 NQLAGTDRAIVTPIAGTTRDVLHEHIHLDGMPLHISDTAG-------LRESADEVEQEGI 291
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTD-----FDKKIIKNFPMNIP-----VIYVWNKIDY 351
R W E++ +D I+ + DA +H D F + I P + V NKID
Sbjct: 292 RRAWQEIERADRILLLTDA--SEHLDLHPAKFWPEFINTLHERAPSAMNRMTIVRNKIDL 349
Query: 352 SGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNE 411
+ + +NI I L A G++LLR L ++ + E++ + AR+RH+ +L
Sbjct: 350 ADEAAGQSEHDNIPTIRLCARSGQGVDLLREHLKQIMGYEEPAETT-FSARQRHLLALET 408
Query: 412 ANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIG 471
A +L + Q + EL+AEDLR E+LS+I G+ T++DLL IFS FCIG
Sbjct: 409 AREFL-----VTGQQQLLSHGAGELLAEDLRAAQEQLSTITGQFTSDDLLGEIFSSFCIG 463
Query: 472 K 472
K
Sbjct: 464 K 464
>gi|377577810|ref|ZP_09806791.1| tRNA modification GTPase MnmE [Escherichia hermannii NBRC 105704]
gi|377541048|dbj|GAB51956.1| tRNA modification GTPase MnmE [Escherichia hermannii NBRC 105704]
Length = 454
Score = 354 bits (908), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 192/474 (40%), Positives = 283/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
+++N I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F +N
Sbjct: 1 MSQNDTIVAQATPPGRGGVGILRISGLKARDVAQAVLGKLPK---PRYADYLPFRDVDNT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I G+R+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGVRIAKPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSTRVNQLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D TD I P +P+ V NK D +G + +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDATDPAAIWPDFIARLPQKLPITVVRNKADITGEPQGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + I LSA G+++LR+ L + +E +LAR RH+ +L A +L
Sbjct: 347 SEVNGHSLIRLSARTGNGVDVLRDHLKHSMGFDTNMEGG-FLARRRHLQALETAAQHLEQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|295095342|emb|CBK84432.1| tRNA modification GTPase trmE [Enterobacter cloacae subsp. cloacae
NCTC 9394]
Length = 454
Score = 354 bits (908), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 195/475 (41%), Positives = 282/475 (59%), Gaps = 25/475 (5%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKAREVAEAVLGKLPK---PRYADYLPFKDADGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 58 PLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIAKPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNQVMNDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + I P +P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPDFIARLPAKLPITVVRNKADVTGETLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + I LSA G+ LR+ L + ++E +LAR RH+ +L EA +L
Sbjct: 347 SDVNGHSLIRLSARTGEGVEALRSHLKQSMGFDTSMEGG-FLARRRHLQALEEAARHLEQ 405
Query: 419 A-IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++I EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLIGAWAG------ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|421846895|ref|ZP_16280039.1| tRNA modification GTPase TrmE [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|411771770|gb|EKS55430.1| tRNA modification GTPase TrmE [Citrobacter freundii ATCC 8090 =
MTCC 1658]
Length = 454
Score = 354 bits (908), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 281/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 TLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNNVISDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARLPAKLPITVVRNKADITGETLGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + + LSA G+++LRN L + +E +LAR RH+ +L EA +L
Sbjct: 347 SEVNGHSLVRLSARTGEGVDVLRNHLKQSMGFETNMEGG-FLARRRHLQALAEAAEHLEQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|269962685|ref|ZP_06177030.1| tRNA modification GTPase [Vibrio harveyi 1DA3]
gi|424048390|ref|ZP_17785943.1| tRNA modification GTPase TrmE [Vibrio cholerae HENC-03]
gi|269832608|gb|EEZ86722.1| tRNA modification GTPase [Vibrio harveyi 1DA3]
gi|408882629|gb|EKM21435.1| tRNA modification GTPase TrmE [Vibrio cholerae HENC-03]
Length = 453
Score = 353 bits (907), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 195/469 (41%), Positives = 283/469 (60%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG ++ + T K LKPR+A Y F ++ ++D+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGPKAN---QVALEVTGKTLKPRYAEYLPFQAEDGTVLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF PHS+TGEDV+EL GHGGP+++ ML+ L I G+R A PGEF++RAFLN+K
Sbjct: 63 ALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILGID---GVRAARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FS+ I L++ LI+LR +E + DFPEE
Sbjct: 120 MDLTQAEAIADLIDASSEEAAKSALQSLQGQFSQRIQTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDFLADGK-VSGDLQTIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + +EVEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVEKIGIERAWDE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQKNINYKNN 363
+ +D ++++ D TD K I +F P +I + + NK D +G I + N+
Sbjct: 292 IAQADRVLFMVDGTTTDATD-PKDIWPDFVDRLPNSIGMTVIRNKADQTGEDMGICHVND 350
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA G++ LR L + + + E ++AR RH+ +L A +L I
Sbjct: 351 PTLIRLSAKTGAGVDALRTHLKECMGFSGNTEGG-FMARRRHLDALERAAQHLQ-----I 404
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 405 GQEQLEGYMAGEILAEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|193069233|ref|ZP_03050190.1| tRNA modification GTPase TrmE [Escherichia coli E110019]
gi|260857883|ref|YP_003231774.1| tRNA modification GTPase TrmE [Escherichia coli O26:H11 str. 11368]
gi|415785869|ref|ZP_11493220.1| tRNA modification GTPase TrmE [Escherichia coli EPECa14]
gi|417297259|ref|ZP_12084506.1| tRNA modification GTPase TrmE [Escherichia coli 900105 (10e)]
gi|419212230|ref|ZP_13755293.1| tRNA modification GTPase TrmE [Escherichia coli DEC8C]
gi|419216786|ref|ZP_13759785.1| tRNA modification GTPase TrmE [Escherichia coli DEC8D]
gi|419229380|ref|ZP_13772214.1| tRNA modification GTPase TrmE [Escherichia coli DEC9A]
gi|419234891|ref|ZP_13777655.1| tRNA modification GTPase TrmE [Escherichia coli DEC9B]
gi|419240244|ref|ZP_13782946.1| tRNA modification GTPase TrmE [Escherichia coli DEC9C]
gi|419245807|ref|ZP_13788437.1| tRNA modification GTPase TrmE [Escherichia coli DEC9D]
gi|419251607|ref|ZP_13794171.1| tRNA modification GTPase TrmE [Escherichia coli DEC9E]
gi|419257496|ref|ZP_13799992.1| tRNA modification GTPase TrmE [Escherichia coli DEC10A]
gi|419263622|ref|ZP_13806025.1| tRNA modification GTPase TrmE [Escherichia coli DEC10B]
gi|419269662|ref|ZP_13812002.1| tRNA modification GTPase TrmE [Escherichia coli DEC10C]
gi|419275011|ref|ZP_13817296.1| tRNA modification GTPase TrmE [Escherichia coli DEC10D]
gi|419286723|ref|ZP_13828881.1| tRNA modification GTPase TrmE [Escherichia coli DEC10F]
gi|419874535|ref|ZP_14396460.1| tRNA modification GTPase TrmE [Escherichia coli O111:H11 str.
CVM9534]
gi|419881573|ref|ZP_14402893.1| tRNA modification GTPase TrmE [Escherichia coli O111:H11 str.
CVM9545]
gi|419899343|ref|ZP_14418857.1| tRNA modification GTPase TrmE [Escherichia coli O26:H11 str.
CVM9942]
gi|419910965|ref|ZP_14429470.1| hypothetical protein ECO10026_26253 [Escherichia coli O26:H11 str.
CVM10026]
gi|420099603|ref|ZP_14610826.1| tRNA modification GTPase TrmE [Escherichia coli O111:H11 str.
CVM9455]
gi|420106568|ref|ZP_14616967.1| tRNA modification GTPase TrmE [Escherichia coli O111:H11 str.
CVM9553]
gi|420112528|ref|ZP_14622326.1| tRNA modification GTPase TrmE [Escherichia coli O26:H11 str.
CVM10021]
gi|420124363|ref|ZP_14633222.1| tRNA modification GTPase TrmE [Escherichia coli O26:H11 str.
CVM10030]
gi|420125236|ref|ZP_14634060.1| tRNA modification GTPase TrmE [Escherichia coli O26:H11 str.
CVM10224]
gi|420135530|ref|ZP_14643613.1| tRNA modification GTPase TrmE [Escherichia coli O26:H11 str.
CVM9952]
gi|424752870|ref|ZP_18180838.1| tRNA modification GTPase TrmE [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424758781|ref|ZP_18186457.1| tRNA modification GTPase TrmE [Escherichia coli O111:H11 str.
CFSAN001630]
gi|425382047|ref|ZP_18766030.1| tRNA modification GTPase TrmE [Escherichia coli EC1865]
gi|432676881|ref|ZP_19912323.1| tRNA modification GTPase mnmE [Escherichia coli KTE142]
gi|192957557|gb|EDV88003.1| tRNA modification GTPase TrmE [Escherichia coli E110019]
gi|257756532|dbj|BAI28034.1| GTPase TrmE [Escherichia coli O26:H11 str. 11368]
gi|323155383|gb|EFZ41566.1| tRNA modification GTPase TrmE [Escherichia coli EPECa14]
gi|378049022|gb|EHW11373.1| tRNA modification GTPase TrmE [Escherichia coli DEC8C]
gi|378060977|gb|EHW23165.1| tRNA modification GTPase TrmE [Escherichia coli DEC8D]
gi|378068261|gb|EHW30364.1| tRNA modification GTPase TrmE [Escherichia coli DEC9A]
gi|378073581|gb|EHW35627.1| tRNA modification GTPase TrmE [Escherichia coli DEC9B]
gi|378079319|gb|EHW41296.1| tRNA modification GTPase TrmE [Escherichia coli DEC9C]
gi|378086944|gb|EHW48814.1| tRNA modification GTPase TrmE [Escherichia coli DEC9D]
gi|378089290|gb|EHW51133.1| tRNA modification GTPase TrmE [Escherichia coli DEC9E]
gi|378096277|gb|EHW58048.1| tRNA modification GTPase TrmE [Escherichia coli DEC10A]
gi|378101557|gb|EHW63242.1| tRNA modification GTPase TrmE [Escherichia coli DEC10B]
gi|378106355|gb|EHW67984.1| tRNA modification GTPase TrmE [Escherichia coli DEC10C]
gi|378112623|gb|EHW74197.1| tRNA modification GTPase TrmE [Escherichia coli DEC10D]
gi|378124736|gb|EHW86140.1| tRNA modification GTPase TrmE [Escherichia coli DEC10F]
gi|386260703|gb|EIJ16177.1| tRNA modification GTPase TrmE [Escherichia coli 900105 (10e)]
gi|388350857|gb|EIL16173.1| tRNA modification GTPase TrmE [Escherichia coli O111:H11 str.
CVM9534]
gi|388364960|gb|EIL28774.1| tRNA modification GTPase TrmE [Escherichia coli O111:H11 str.
CVM9545]
gi|388370489|gb|EIL34015.1| hypothetical protein ECO10026_26253 [Escherichia coli O26:H11 str.
CVM10026]
gi|388380067|gb|EIL42692.1| tRNA modification GTPase TrmE [Escherichia coli O26:H11 str.
CVM9942]
gi|394395554|gb|EJE71982.1| tRNA modification GTPase TrmE [Escherichia coli O26:H11 str.
CVM10224]
gi|394414392|gb|EJE88337.1| tRNA modification GTPase TrmE [Escherichia coli O26:H11 str.
CVM10021]
gi|394415156|gb|EJE89046.1| tRNA modification GTPase TrmE [Escherichia coli O26:H11 str.
CVM10030]
gi|394415557|gb|EJE89411.1| tRNA modification GTPase TrmE [Escherichia coli O111:H11 str.
CVM9553]
gi|394419905|gb|EJE93474.1| tRNA modification GTPase TrmE [Escherichia coli O26:H11 str.
CVM9952]
gi|394422784|gb|EJE96101.1| tRNA modification GTPase TrmE [Escherichia coli O111:H11 str.
CVM9455]
gi|408293225|gb|EKJ11679.1| tRNA modification GTPase TrmE [Escherichia coli EC1865]
gi|421936464|gb|EKT94127.1| tRNA modification GTPase TrmE [Escherichia coli O26:H11 str.
CFSAN001629]
gi|421948003|gb|EKU05054.1| tRNA modification GTPase TrmE [Escherichia coli O111:H11 str.
CFSAN001630]
gi|431210177|gb|ELF08240.1| tRNA modification GTPase mnmE [Escherichia coli KTE142]
Length = 454
Score = 353 bits (907), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 283/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +
Sbjct: 1 MSDNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFL +KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLYDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + + I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N A I LSA G+++LRN L + +E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|338998446|ref|ZP_08637120.1| tRNA modification GTPase TrmE [Halomonas sp. TD01]
gi|338764763|gb|EGP19721.1| tRNA modification GTPase TrmE [Halomonas sp. TD01]
Length = 456
Score = 353 bits (907), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 192/468 (41%), Positives = 276/468 (58%), Gaps = 25/468 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I +ATPPGRGGVGIIR+SG I V PR+A Y F+ + +ID+G+
Sbjct: 11 ITALATPPGRGGVGIIRVSGPACRDIAAAVLGHCPS---PRYAHYGPFYAAES-VIDEGI 66
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+ F P+S+TGEDV+EL GHGGPII+ MLL CL++G RLA PGEF++RAFLN+K
Sbjct: 67 ALLFNGPYSFTGEDVLELQGHGGPIIMDMLLERCLQLGA----RLARPGEFSERAFLNDK 122
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++ SAA++A+ SL G+FS+ I+ L+++LI LR +E + DFPEE
Sbjct: 123 LDLAQAEAIADLIDATSRSAAENAVRSLQGEFSQRISALVERLIELRVYVEAAIDFPEEE 182
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + + N L +++ L + + + AL+R G++VV+ G+PN GKSSL N+L
Sbjct: 183 IDFLADGH-VANRLENVQQALTAVRKAAGQGALLREGMSVVIAGRPNAGKSSLLNALTEQ 241
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
D AIVT IAGTTRD + + I I+ I DTAG+ D + VEKIG+ R W E
Sbjct: 242 DTAIVTDIAGTTRDVLREYIHIDGMPLHIIDTAGLRDTP-------DAVEKIGVARAWEE 294
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++ + DA TD + + P + V NKID S Q I+
Sbjct: 295 IEKADRVLLLVDASTTDATDPMTIWPEFVARLPDQTRLTLVRNKIDTSAEQAGIDLSTTT 354
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA +G++ L+ L D++ + T E + AR RH+ +L+ A L
Sbjct: 355 PTIRLSAKTGVGVDNLKAHLKDIMGFSATTEGR-FSARRRHLDALDRAMAALET-----G 408
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ + EL+AEDLR + L I G+ + +DLL IF FCIGK
Sbjct: 409 RAQLDGYGAGELLAEDLRDAQQALGEITGEFSADDLLGEIFGSFCIGK 456
>gi|365966372|ref|YP_004947934.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|444347813|ref|ZP_21155620.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
gi|365745285|gb|AEW76190.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|443548105|gb|ELT57443.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
Length = 451
Score = 353 bits (907), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 196/468 (41%), Positives = 279/468 (59%), Gaps = 24/468 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + + V K K PR A Y F + ++D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPKAIEVAQAVLGKCPK---PRMADYLPFKEADGTVLDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK P+S+TGEDV+EL GHGG ++L +LL L I G+RLA PGEF+++AFLN+K
Sbjct: 62 ALYFKGPNSFTGEDVLELQGHGGQVVLDLLLKRILRIE---GIRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AA+SA+ SL G+FS +N L+D +I LRT +E + DFP+E
Sbjct: 119 LDLAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEE 178
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L L I +L K+ + K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 179 IDF-LADGKIEGHLNDIIAQLDKVRAEAKQGSILREGMKVVIAGRPNAGKSSLLNTLAGR 237
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D +EVE+IGI R W E
Sbjct: 238 EAAIVTDIAGTTRDVLREHIHLDGMPLHIIDTAGLRDAT-------DEVERIGISRAWHE 290
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
+ +D I+ + D+ D D K + + P NIP+ + NK D SG + + ++
Sbjct: 291 IDQADRILLMLDS-SDTEQDLAKVRSEFLAKLPNNIPLTIIRNKADLSGEAERLYEEDGY 349
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
+ LSA + G++LLR+ L + QT +LAR RH+ +L A +L +
Sbjct: 350 TVVNLSAKTQQGVDLLRDHLKQAM-GYQTGMEGGFLARRRHLEALELAARHLQMGHVQLT 408
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 409 QFHAG-----ELLAEELRMVQSALSEITGQFTSDDLLTNIFSSFCIGK 451
>gi|337281483|ref|YP_004620955.1| tRNA modification GTPase [Ramlibacter tataouinensis TTB310]
gi|334732560|gb|AEG94936.1| candidate tRNA modification GTPase [Ramlibacter tataouinensis
TTB310]
Length = 439
Score = 353 bits (907), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 191/457 (41%), Positives = 288/457 (63%), Gaps = 25/457 (5%)
Query: 23 IRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPHSYTGEDV 82
+R+SG+++ ++ +C + LKPR ATY +F + ID GL I+F APHSYTGEDV
Sbjct: 1 MRVSGQSVQPVIAALCGRA---LKPREATYLAFRAADGTPIDHGLAIHFPAPHSYTGEDV 57
Query: 83 IELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVEAIIDLINA 142
+EL HGGP++L +LL+ CLE G+++GLR+A PGEFT+RAFLN+K+DL Q EAI DLI+A
Sbjct: 58 LELQAHGGPVVLQLLLARCLEAGQAMGLRVAEPGEFTQRAFLNDKIDLAQAEAIADLIDA 117
Query: 143 STESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELILNKNDFFNELI 202
STE+AA+SA SL+G+FS+ ++ L D L+ LR L+E + DFPEE + L ++D +L
Sbjct: 118 STEAAARSASRSLAGEFSREVHQLRDALVQLRMLVEATLDFPEEEIDF-LKQSDAQGQLD 176
Query: 203 KIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDK 262
+++ +L +++ + ++ AL+R G+ VV+ GQPN GKSSL N+L G+++AIVT I GTTRD
Sbjct: 177 RLRDRLDQVLARTRQGALLREGIQVVIAGQPNAGKSSLLNALAGAELAIVTPIPGTTRDV 236
Query: 263 ITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARY 322
+++T+QI + DTAGI + + VE+IGIER W + +D ++++ D
Sbjct: 237 VSQTLQIEGVPVHVVDTAGI----RPQGEGADPVERIGIERAWGRIAQADAVVFLHDLTR 292
Query: 323 DKHTDF---DKKII----KNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKRI 375
D+ D+ I + P +PVI VWNK D + + ++ LSA
Sbjct: 293 TALADYRAADEAIAHSLREKLPQAVPVIDVWNKADAA-----VPPSPPATSLTLSAKTGA 347
Query: 376 GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLE 435
G++LLR LL+ + Q+ ++AR+RH+ +L + +L+ A LE
Sbjct: 348 GLDLLRRRLLE-VAGWQSAPEGLFIARQRHVQALRQVGQHLALA----EAHLAPQALALE 402
Query: 436 LIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L+AE+LR L++I G+ T +DLL IFS FCIGK
Sbjct: 403 LLAEELRLAQSALAAITGEFTADDLLGVIFSSFCIGK 439
>gi|153949187|ref|YP_001403100.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis IP
31758]
gi|166991119|sp|A7FPC2.1|MNME_YERP3 RecName: Full=tRNA modification GTPase MnmE
gi|152960682|gb|ABS48143.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis IP
31758]
Length = 454
Score = 353 bits (907), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 195/474 (41%), Positives = 283/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ I+ ATPPGRGGVGI+R+SG+ + V K K PR+A Y F + +
Sbjct: 1 MSTTDTIVAQATPPGRGGVGILRVSGRAASEVAHAVLGKLPK---PRYADYLPFKDVDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ +YF P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 58 TLDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILAL---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS I+ L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSARIHQLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L ++ + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I IN I DTAG+ + N +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHINGMPLHIIDTAGLREAN-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D T+ + + P +P+ V NK D +G +
Sbjct: 287 ERAWNEIEQADRVLFMVDGTTTDATEPAAIWPEFMARLPATLPITVVRNKADITGETLGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N + I LSA GI+LLR+ L + T E +LAR RH+ +L A +L
Sbjct: 347 TEVNGHSLIRLSARTGEGIDLLRDHLKQSMGFTSNTEGG-FLARRRHLQALETAARHL-- 403
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
I+ Q + EL+AE+LR + LS I G+ +++DLL IFS FCIGK
Sbjct: 404 -IQGHEQLVSAYAG--ELLAEELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454
>gi|419959156|ref|ZP_14475213.1| tRNA modification GTPase TrmE [Enterobacter cloacae subsp. cloacae
GS1]
gi|388606125|gb|EIM35338.1| tRNA modification GTPase TrmE [Enterobacter cloacae subsp. cloacae
GS1]
Length = 454
Score = 353 bits (907), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 195/475 (41%), Positives = 282/475 (59%), Gaps = 25/475 (5%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKAREVAEAVLGKLPK---PRYADYLPFKDADGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 58 PLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIAKPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNQVMNDLNAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + I P +P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPDFIARLPAKLPITVVRNKADVTGETLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + I LSA G+ LR+ L + ++E +LAR RH+ +L EA +L
Sbjct: 347 SDVNGHSLIRLSARTGEGVEALRSHLKQSMGFDTSMEGG-FLARRRHLQALEEAARHLEQ 405
Query: 419 A-IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++I EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLIGAWAG------ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|149190487|ref|ZP_01868758.1| tRNA modification GTPase TrmE [Vibrio shilonii AK1]
gi|148835741|gb|EDL52707.1| tRNA modification GTPase TrmE [Vibrio shilonii AK1]
Length = 474
Score = 353 bits (907), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 197/469 (42%), Positives = 285/469 (60%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG E+ + T K LKPR+A Y F ++ + +D+G+
Sbjct: 27 IVAQATAPGRGGVGIIRVSGP---LAAEVALQVTGKTLKPRYADYLPFKAQDGSELDQGI 83
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF PHS+TGEDV+EL GHGGP+++ ML+ L I G+R A PGEF++RAFLN+K
Sbjct: 84 ALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILLI---PGVRPARPGEFSERAFLNDK 140
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FSK I +L++ LI+LR +E + DFPEE
Sbjct: 141 MDLTQAEAIADLIDASSEEAAKSALQSLQGQFSKRIQVLVESLIHLRIYVEAAIDFPEEE 200
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 201 IDF-LADGKVAGDLQHIIDNLESVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 259
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGIER W E
Sbjct: 260 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGIERAWEE 312
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQKNINYKNN 363
++ +D ++++ D TD K+I +F P +I + + NK+D +G I + N+
Sbjct: 313 IEQADRVLFMVDGTTTDATD-PKEIWPDFIDRLPSSIGITVIRNKVDETGETLGICHVND 371
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA G+ LR L ++ + E ++AR RH+ +L A +L I
Sbjct: 372 PTLIRLSARTGKGVPALREHLKAIMGFSGANEGG-FMARRRHLDALERAAEHLD-----I 425
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 426 GQQQLEGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 474
>gi|260595826|ref|YP_003208397.1| tRNA modification GTPase TrmE [Cronobacter turicensis z3032]
gi|260215003|emb|CBA26661.1| tRNA modification GTPase mnmE [Cronobacter turicensis z3032]
Length = 454
Score = 353 bits (907), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 190/474 (40%), Positives = 284/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG+ + + V K K R+A Y F +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRVSGQQARDVAQAVLGKLPKA---RYADYLPFKDADGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I G+R+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGVRIAKPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D TD + I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDATDPAQIWPDFIARLPAKLPITVVRNKADVTGEHPGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + I LSA G+++LR+ L + ++E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHSLIRLSARTSDGVDVLRSHLKQSMGFDTSMEGG-FLARRRHLQALEDAANHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|417949542|ref|ZP_12592676.1| tRNA modification GTPase TrmE [Vibrio splendidus ATCC 33789]
gi|342808051|gb|EGU43221.1| tRNA modification GTPase TrmE [Vibrio splendidus ATCC 33789]
Length = 453
Score = 353 bits (907), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 199/469 (42%), Positives = 283/469 (60%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG ++ + T K LKPR+A Y F + +D+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGP---LATQVALEVTGKTLKPRYAEYLPFKSADGIELDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF PHS+TGEDV+EL GHGGP+++ ML+ L I G+R A PGEF++RAFLN+K
Sbjct: 63 ALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILGIS---GVRAARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FSK IN L+D LI+LR +E + DFPEE
Sbjct: 120 MDLTQAEAIADLIDASSEEAAKSALQSLQGEFSKRINTLVDSLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + +L I L + Q+ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDFLADGK-VSADLQAIIDNLEAVRQEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + +EVEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVEKIGIERAWEE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQKNINYKNN 363
+ +D ++++ D TD K I +F P NI + + NK D + + I + N+
Sbjct: 292 IAQADRVLFMVDGTTTDATD-PKDIWPDFVDRLPDNIGMTVIRNKADQTNEELGICHVND 350
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA G++ LR+ L + + E ++AR RH+ +L A+ +L I
Sbjct: 351 PTLIRLSAKTGQGVDALRSHLKECMGFAGGHEGG-FMARRRHLDALERASEHLD-----I 404
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 405 GQQQLEGYMAGEILAEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|167855706|ref|ZP_02478462.1| tRNA modification GTPase TrmE [Haemophilus parasuis 29755]
gi|167853162|gb|EDS24420.1| tRNA modification GTPase TrmE [Haemophilus parasuis 29755]
Length = 452
Score = 353 bits (907), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 195/471 (41%), Positives = 291/471 (61%), Gaps = 29/471 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ ATP GRGG+GI+R+SG + + V K K PR A Y F ++ ++D+G+
Sbjct: 5 IVAQATPIGRGGIGILRVSGPLATEVAQAVLGKCPK---PRIADYLPFKDEDGTVLDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++FKAPHS+TGEDV+EL GHGG +IL +LL+ L++ G+R+A GEF+++AFLN+K
Sbjct: 62 ALFFKAPHSFTGEDVLELQGHGGQVILDLLLNRILKVK---GVRIARAGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AA+SA+ SL G+FS IN L+D +I LRT +E + DFP+E
Sbjct: 119 LDLAQAEAIADLIDATSEQAARSALKSLQGEFSNKINELVDSVIYLRTYVEAAIDFPDEE 178
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L +I +L + Q+ K+ ++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 179 IDF-LADGKIEAKLNEIIAQLANVRQEAKQGTILREGMKVVIAGKPNAGKSSLLNALAGR 237
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG +++ +EVEKIGI+R W E
Sbjct: 238 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVEKIGIKRAWDE 290
Query: 308 LKNSDIIIYVQDARYDKHTDFDKK---IIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++ + D+ + F ++ + P NIPV + NK+D +G +++ +N
Sbjct: 291 IEQADHVLLMIDSNESQADSFQQEWATFLAKLPKNIPVTVIRNKVDLTGEAESLVQADNF 350
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP---YLARERHIHSLNEANYYLSCAIK 421
I LSA ++G++LLR L +K+ +SS ++AR RH+ +L A +L
Sbjct: 351 TVIRLSAQTKVGVDLLREHL----KKSMGYQSSTEGGFIARRRHLVALETAAEHLERGHI 406
Query: 422 IINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ Q EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 407 QLTQFYAG-----ELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 452
>gi|409204001|ref|ZP_11232201.1| tRNA modification GTPase TrmE [Pseudoalteromonas flavipulchra JG1]
Length = 454
Score = 353 bits (907), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 197/475 (41%), Positives = 285/475 (60%), Gaps = 24/475 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M+ +++ I AT PGRGGVGIIR+SG ++ E + K K R+A Y F
Sbjct: 1 MIAQDT-IAAQATAPGRGGVGIIRVSGCKARAVAEQILGKCPK---TRYAEYLPFNTLAG 56
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+D+G+ ++F+ P+S+TGEDV+EL GHGGP++L MLL +I + +RLA PGEF++
Sbjct: 57 EQLDQGIALFFQGPNSFTGEDVLELQGHGGPVVLDMLLKEISQIEQ---VRLAKPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAF+N+KLDL Q EAI DLINA++E AAKSA+ SL G FSK IN L++K+I+LR +E +
Sbjct: 114 RAFMNDKLDLTQAEAIADLINATSEQAAKSALHSLQGDFSKHINTLVEKVIHLRMYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFP+E + L+ +L I ++L ++ +Q K+ +++R G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPDEEIDF-LSDGKVSGDLETIIQQLAEVRKQAKQGSIMREGMRVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D K VE+IG
Sbjct: 233 LNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDSPDK-------VEQIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
IER W E++ +D ++++ D TD K I+ P + + + NK+D SG
Sbjct: 286 IERAWEEIRGADHVLFMVDGTETHETDPAKIWPDFIEQLPQGMEITVIRNKVDLSGEAVG 345
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
+ I LSA GI+LLR L I T E ++AR RH+ +L A +L
Sbjct: 346 ATTSDGHTLIRLSAKDIQGIDLLREHLKACIGFTGATEGG-FMARRRHLDALEHAAEHLE 404
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
I Q++ E++AE+LR + L+ I G+ T++DLL IFS FCIGK
Sbjct: 405 -----IGQTQLEMHIAGEILAEELRLTQQYLNEITGEFTSDDLLGKIFSSFCIGK 454
>gi|54307239|ref|YP_128259.1| tRNA modification GTPase TrmE [Photobacterium profundum SS9]
gi|81828901|sp|Q6LW56.1|MNME_PHOPR RecName: Full=tRNA modification GTPase MnmE
gi|46911659|emb|CAG18457.1| Putative thiophene and furan oxidation protein ThdF [Photobacterium
profundum SS9]
Length = 455
Score = 353 bits (907), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 194/468 (41%), Positives = 286/468 (61%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ ATPPGRGGVGIIR+SG E+ ++LK R+A Y F ++ + +D+G+
Sbjct: 8 IVAQATPPGRGGVGIIRVSGPKAK---EVALAVAGRELKTRYAEYLPFKNEDGSALDQGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++FK P+S+TGEDV+EL GHGGP+++ M++ L K G+R A PGEF++RAF+N+K
Sbjct: 65 ALFFKGPNSFTGEDVLELQGHGGPVLMDMMIRRIL---KLEGIRPARPGEFSERAFMNDK 121
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AAKSA SL G FS +N L++ +I+LR +E + DFPEE
Sbjct: 122 LDLAQAEAIADLIDASSEEAAKSAFRSLQGAFSTKVNELVEAVIHLRIYVEAAIDFPEEE 181
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ N+L I L + ++ + ++IR G+ VV+ G+PN GKSSL N+L G
Sbjct: 182 IDF-LSDGKVSNDLHGIIDNLEAVRREANQGSIIREGMKVVIAGRPNAGKSSLLNALSGK 240
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
D AIVT IAGTTRD + + I I+ I DTAG +++ NEVE+IGIER W E
Sbjct: 241 DSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASNEVERIGIERAWEE 293
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D TD I+ P ++ + + NK++ +G I + NN
Sbjct: 294 IQQADRVLFMVDGTTTNDTDPKDIWPDFIERLPESMGLTVIRNKVELTGEAAGICHVNNP 353
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA GI+ LR L D + + T E ++AR RH+ +L +A +L +I
Sbjct: 354 PLIRLSARTGEGIDSLREHLKDCMGFSGTTEGG-FMARRRHLEALEQAAQHL----EIGK 408
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + F E++AE+LR + LS I G+ T++DLL IF+ FCIGK
Sbjct: 409 EQLEGFMAG-EILAEELRLAQQHLSEITGEFTSDDLLGRIFTSFCIGK 455
>gi|422908518|ref|ZP_16943211.1| tRNA modification GTPase TrmE [Vibrio cholerae HE-09]
gi|341640506|gb|EGS65092.1| tRNA modification GTPase TrmE [Vibrio cholerae HE-09]
Length = 453
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 192/468 (41%), Positives = 282/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG + + V +T L+PR+A Y F ++ +D+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGPLAAHVAQTVTGRT---LRPRYAEYLPFTDEDGQQLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F PHS+TGEDV+EL GHGGP+++ ML+ L+I G+R A PGEF++RAFLN+K
Sbjct: 63 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIK---GVRPARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FSK I+ L++ LI+LR +E + DFPEE
Sbjct: 120 MDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LADGKVSTDLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + + VEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DAVEKIGIERAWEE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D + TD + P NI + + NK D +G I + N
Sbjct: 292 IRQADRVLFMVDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGESLGICHVNQP 351
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G++ LR L + + + + E ++AR RH+ +L A +L+ I
Sbjct: 352 TLIRLSAKTGQGVDALRQHLKECMGFSGSQEGG-FMARRRHLDALERAAEHLA-----IG 405
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 406 QQQLEGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|422006871|ref|ZP_16353859.1| tRNA modification GTPase TrmE [Providencia rettgeri Dmel1]
gi|414098062|gb|EKT59712.1| tRNA modification GTPase TrmE [Providencia rettgeri Dmel1]
Length = 454
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 199/472 (42%), Positives = 290/472 (61%), Gaps = 25/472 (5%)
Query: 5 NSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIID 64
N I+ ATPPGRGGVGI+R+SG I EIV K K PR+A Y F ++ +++D
Sbjct: 4 NDTIVAQATPPGRGGVGILRVSGPKAAQIAEIVLGKLPK---PRYADYLPFRDEDGSVLD 60
Query: 65 KGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFL 124
+G+ +YF P+S+TGEDV+EL GHGGP+IL +LL L I G+R+A PGEF++RAFL
Sbjct: 61 QGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLRRILTID---GIRIANPGEFSERAFL 117
Query: 125 NNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFP 184
N+KLDL Q EAI DLI+AS+E AA+SAM SL G FS I+ L++ L +LR +E + DFP
Sbjct: 118 NDKLDLAQAEAIADLIDASSEQAARSAMNSLQGAFSSHIHQLVEALTHLRIYVEAAIDFP 177
Query: 185 EENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSL 244
+E + L+ +L ++ L ++ Q ++ +L+R G+ VV+ G+PN GKSSL N+L
Sbjct: 178 DEEIDF-LSDGKIEAKLNEVVADLEQVRSQARQGSLLREGMKVVIAGRPNAGKSSLLNAL 236
Query: 245 VGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304
G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER
Sbjct: 237 AGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERA 289
Query: 305 WVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYK 361
W E++ +D ++++ D+ T+ + + + P +PV + NK D +G
Sbjct: 290 WKEIEQADHVLFMVDSTTTNATEPQEIWPEFMARLPDELPVTVIRNKADMTGEPVEFIDN 349
Query: 362 NNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI- 420
I LSA + GI+LLR+ L + I E +LAR RH+ +LN A +L
Sbjct: 350 TRYPLIRLSAREEKGIDLLRDHLKETIGFNSNTEGG-FLARSRHLQALNAAAVHLEQGYD 408
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++N ++ EL+AE+LR ++LS I G+ T++DLL IFS FCIGK
Sbjct: 409 QLVNA------RSGELLAEELRLAQQELSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|157155417|ref|YP_001465191.1| tRNA modification GTPase TrmE [Escherichia coli E24377A]
gi|166991107|sp|A7ZTR2.1|MNME_ECO24 RecName: Full=tRNA modification GTPase MnmE
gi|157077447|gb|ABV17155.1| tRNA modification GTPase TrmE [Escherichia coli E24377A]
Length = 454
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 282/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +
Sbjct: 1 MSDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFL +KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLYDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + + I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N A I LSA G+ +LRN L + +E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHALIRLSARTGEGVEVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEQAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|258626075|ref|ZP_05720926.1| tRNA modification GTPase [Vibrio mimicus VM603]
gi|258581601|gb|EEW06499.1| tRNA modification GTPase [Vibrio mimicus VM603]
Length = 464
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 193/468 (41%), Positives = 280/468 (59%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG + + V +T L+PR+A Y F +N +D+G+
Sbjct: 17 IVAQATAPGRGGVGIIRVSGPLAAQVAQTVTGRT---LRPRYAEYLPFTDENGQQLDQGI 73
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F PHS+TGEDV+EL GHGGP+++ ML+ L+I G+R A PGEF++RAFLN+K
Sbjct: 74 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIN---GVRPARPGEFSERAFLNDK 130
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FSK I+ L++ LI+LR +E + DFPEE
Sbjct: 131 MDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE 190
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 191 IDF-LADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 249
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + + VEKIGIER W E
Sbjct: 250 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DAVEKIGIERAWEE 302
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D + TD + + P NI + + NK D +G I + N
Sbjct: 303 IRQADRVLFMVDGTTTEATDPQEIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQP 362
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G++ LR L + + E ++AR RH+ +L A +L I
Sbjct: 363 TLIRLSAKTGQGVDALRQHLKECMGFAGNQEGG-FMARRRHLDALERAAEHLD-----IG 416
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 417 QQQLEGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 464
>gi|416892113|ref|ZP_11923546.1| tRNA modification GTPase TrmE [Aggregatibacter aphrophilus ATCC
33389]
gi|347814982|gb|EGY31625.1| tRNA modification GTPase TrmE [Aggregatibacter aphrophilus ATCC
33389]
Length = 451
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 193/470 (41%), Positives = 287/470 (61%), Gaps = 28/470 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + + V K K PR A Y F ++ ++D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPKAIDVAQAVLGKCPK---PRMADYLPFKDEDGTLLDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK+P+S+TGEDV+EL GHGG ++L +LL L I G+RLA PGEF+++AFLN+K
Sbjct: 62 ALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILRID---GIRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AA+SA+ SL G+FS +N L+D +I LRT +E + DFP+E
Sbjct: 119 LDLAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEE 178
Query: 188 QELILNK--NDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLV 245
+ + + + N++I +L + + K+ +++R G+ VV+ G+PN GKSSL N+L
Sbjct: 179 IDFLADGKIESYLNDII---AQLDGVRAEAKQGSILREGMKVVIAGRPNAGKSSLLNALA 235
Query: 246 GSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTW 305
G + AIVT IAGTTRD + + I ++ I DTAG +++ +EVE+IGI R W
Sbjct: 236 GREAAIVTDIAGTTRDVLREHIHLDGMPLHIIDTAG-------LREATDEVERIGISRAW 288
Query: 306 VELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKN 362
E++ +D I+ + D D D K + + P +IPV + NK D +G Q+ + +
Sbjct: 289 NEIEQADRILLMLDGS-DTEQDLSKVRSEFLAKLPNHIPVTIIRNKADLTGEQEGLYEEQ 347
Query: 363 NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKI 422
+ LSA + G+ +LR+ L + QT +LAR RH+ +L +A +L +I
Sbjct: 348 GYTVVSLSAKTQRGVEILRDHLKQSM-GYQTGMEGGFLARRRHLEALEQAAQHL----QI 402
Query: 423 INQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ F EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 403 GHVQLTEFHAG-ELLAEELRLVQSALSEITGQFTSDDLLTNIFSSFCIGK 451
>gi|294638333|ref|ZP_06716586.1| tRNA modification GTPase TrmE [Edwardsiella tarda ATCC 23685]
gi|451966292|ref|ZP_21919546.1| tRNA modification GTPase MnmE [Edwardsiella tarda NBRC 105688]
gi|291088586|gb|EFE21147.1| tRNA modification GTPase TrmE [Edwardsiella tarda ATCC 23685]
gi|451315071|dbj|GAC64908.1| tRNA modification GTPase MnmE [Edwardsiella tarda NBRC 105688]
Length = 455
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 190/481 (39%), Positives = 287/481 (59%), Gaps = 35/481 (7%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M+T + I+ AT PGRGGVGI+R+SG ++ + + K K PR+A Y F ++
Sbjct: 1 MITPSDTIVAQATAPGRGGVGILRVSGPQAQAVAQALLGKLPK---PRYADYLPFRDQDG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
++D+G+ +YF P+S+TGEDV+EL GHGGP+IL +LL L++ GLR+A PGEF++
Sbjct: 58 TLLDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILQL---PGLRIARPGEFSE 114
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+K+DL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 RAFLNDKMDLAQAEAIADLIDASSEQAARSAVNSLQGVFSARVNQLVESLTHLRIYVEAA 174
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFP+E + L+ +L + +L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 IDFPDEEIDF-LSDGKIEAQLNAVMHELADVRAEARQGSLLREGMKVVIAGRPNAGKSSL 233
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IG
Sbjct: 234 LNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIG 286
Query: 301 IERTWVELKNSDIIIYVQDARYDKH-------TDFDKKIIKNFPMNIPVIYVWNKIDYSG 353
IER W E++ +D ++++ D DF I P ++P+ V NK D +G
Sbjct: 287 IERAWQEIEQADRVLFMVDGTTTDATDPATIWPDF----IARLPASLPITVVRNKADVTG 342
Query: 354 HQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEAN 413
I+ + + LSA GI++LR+ L + +E +LAR RH+ +L +A
Sbjct: 343 EPLGISTSHGHTLVRLSARTGAGIDVLRDHLKQSMGFETHLEGG-FLARRRHLQALEQAA 401
Query: 414 YYLSCAIKIINQSEKNFEKNL--ELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIG 471
+L Q + + EL+AE+LR + LS I G+ T++DLL IF+ FCIG
Sbjct: 402 IHL-------QQGKDQLLGAMAGELLAEELRLAQQSLSEITGEFTSDDLLGRIFTSFCIG 454
Query: 472 K 472
K
Sbjct: 455 K 455
>gi|323493772|ref|ZP_08098890.1| tRNA modification GTPase TrmE [Vibrio brasiliensis LMG 20546]
gi|323311906|gb|EGA65052.1| tRNA modification GTPase TrmE [Vibrio brasiliensis LMG 20546]
Length = 453
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 199/469 (42%), Positives = 282/469 (60%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG L S ++ + T K+L+PR+A Y F ++ + +D+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGP-LAS--KVALEVTGKELRPRYAEYLPFTAEDGSQLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F PHS+TGEDV+E GHGGP+++ ML+ L+I G+R A PGEF++RAFLN+K
Sbjct: 63 ALFFPNPHSFTGEDVVEFQGHGGPVVMDMLIKRILKIS---GIRTARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AAKSA+ SL G FS IN L++ LI+LR +E + DFPEE
Sbjct: 120 LDLAQAEAIADLIDASSEEAAKSALQSLQGAFSGRINTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LADGKVAADLQTIIDNLAAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + +EVEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVEKIGIERAWEE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQKNINYKNN 363
+ +D ++++ D TD K I +F P NI + + NK D +G I + N+
Sbjct: 292 ISQADRVLFMVDGTTTDATD-PKDIWPDFVDRLPENIGMTVIRNKADQTGEDLGICHVND 350
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA G+ LR L + + E ++AR RH+ +L A +L I
Sbjct: 351 PTLIRLSAKTGDGVEALRTHLKECMGFAGGNEGG-FMARRRHLEALERAAEHLE-----I 404
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + LS I G+ +++DLL IFS FCIGK
Sbjct: 405 GQQQLEGYMAGEILAEELRITQQHLSEITGEFSSDDLLGRIFSSFCIGK 453
>gi|283836140|ref|ZP_06355881.1| hypothetical protein CIT292_10562 [Citrobacter youngae ATCC 29220]
gi|291068330|gb|EFE06439.1| tRNA modification GTPase TrmE [Citrobacter youngae ATCC 29220]
Length = 454
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 281/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++R
Sbjct: 58 SLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNSVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPANIWPDFIARLPAKLPITVVRNKADITGETLGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + + LSA G+++LRN L + +E +LAR RH+ +L EA +L
Sbjct: 347 SEVNGHSLVRLSARTGEGVDVLRNHLKQSMGFETNMEGG-FLARRRHLQALAEAAEHLEQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|442609909|ref|ZP_21024639.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
gi|441748629|emb|CCQ10701.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
Length = 454
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 288/474 (60%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ I AT PGRGGVGIIR+SG + + + + K R+A Y +F +
Sbjct: 1 MSSQDTIAAQATAPGRGGVGIIRVSGNKAKLVAKHILGRCPK---TRYAEYLAFNTLDGE 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F+ P+S+TGEDV+EL GHGGP++L MLL EI + G+RLA PGEF++R
Sbjct: 58 QLDQGIALFFQGPNSFTGEDVLELQGHGGPVVLDMLLR---EISQLEGVRLAKPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLINA++E AAKSA+ SL G FS I+ L++++I+LR +E +
Sbjct: 115 AFLNDKLDLTQAEAISDLINATSEQAAKSALHSLQGSFSNHIHTLVEQVIHLRMYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ N+L I ++L + QQ K+ +++R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKVANDLNAIIEQLATVRQQAKQGSIMREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG ++++ ++VE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LRESPDKVEQIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D TD K + P + V V NKID S Q +
Sbjct: 287 ERAWDEIRAADHVLFMVDGLDTNETDPTKIWPDFMAKLPRGMAVTVVRNKIDLSNEQAGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + LSA ++GI+LLR+ L I E ++AR RH+ +L A +L
Sbjct: 347 CQQGNYPVLRLSAKDQLGIDLLRDHLKACIGFQGATEGG-FMARRRHLDALERAAEHLE- 404
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
I + + E++AE+LR + L+ I G+ T++DLL IFS FCIGK
Sbjct: 405 ----IGRDQLELHIAGEILAEELRLTQQHLNEITGEFTSDDLLGKIFSSFCIGK 454
>gi|56415716|ref|YP_152791.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|81361369|sp|Q5PKU1.1|MNME_SALPA RecName: Full=tRNA modification GTPase MnmE
gi|56129973|gb|AAV79479.1| thiophene and furan oxidation protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
Length = 454
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 282/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F + +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKARGVAQEVLGKLPK---PRYADYLPFKDVDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D N +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAN-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D I P N+P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + + LSA G+++LRN L + +E +LAR RH+ +L EA +L
Sbjct: 347 SEVNGHSLVRLSARTGEGVDVLRNNLKQSMGFETNMEGG-FLARRRHLQALAEAANHLEQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|386825677|ref|ZP_10112797.1| tRNA modification GTPase TrmE [Serratia plymuthica PRI-2C]
gi|386377419|gb|EIJ18236.1| tRNA modification GTPase TrmE [Serratia plymuthica PRI-2C]
Length = 455
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 192/475 (40%), Positives = 283/475 (59%), Gaps = 23/475 (4%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M + I+ ATPPGRGGVGI+R+SG+ + + K K PR+A Y F
Sbjct: 1 MSSTTDTIVAQATPPGRGGVGILRISGRGAKDAAQALLGKLPK---PRYADYLPFRDAEG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++
Sbjct: 58 ATLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRVLAL---PGVRIARPGEFSE 114
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI+AS+E AA+SAM SL G FS I+ L++ L +LR +E +
Sbjct: 115 RAFLNDKLDLAQAEAIADLIDASSEQAARSAMNSLQGAFSTRIHQLVEALTHLRIYVEAA 174
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 IDFPDEEIDF-LSDGKIEAQLNGVMADLDNVRAEARQGSLLREGMKVVIAGRPNAGKSSL 233
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G D AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IG
Sbjct: 234 LNALAGRDAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIG 286
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
IER W E++ +D ++++ D T+ + + + P ++P+ V NK D +G
Sbjct: 287 IERAWNEIEQADRVLFMVDGTTTAATEPAEIWPEFMARLPHSLPITVVRNKADITGETLG 346
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
+ N + I LSA GI+LLR+ L + T +E +LAR RH+ +L +A +L
Sbjct: 347 MTEVNGHSLIRLSARTGEGIDLLRDHLKQSMGFTSNMEGG-FLARRRHLQALEQAAQHLV 405
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 EGKEQLVSAYAG-----ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 455
>gi|417436079|ref|ZP_12161607.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Salmonella enterica
subsp. enterica serovar Mississippi str. A4-633]
gi|353613519|gb|EHC65604.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Salmonella enterica
subsp. enterica serovar Mississippi str. A4-633]
Length = 454
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 195/474 (41%), Positives = 282/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F + +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKLPK---PRYADYLPFKDVDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D N +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAN-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D I P N+P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + + LSA GI++LRN L + +E +LAR RH+ +L EA +L
Sbjct: 347 SEVNGHSLVRLSARTGEGIDVLRNHLKQSMGFETNMEGG-FLARRRHLQALAEAADHLEQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|424657893|ref|ZP_18095167.1| tRNA modification GTPase TrmE [Vibrio cholerae HE-16]
gi|408057321|gb|EKG92173.1| tRNA modification GTPase TrmE [Vibrio cholerae HE-16]
Length = 453
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 192/468 (41%), Positives = 282/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG + + V +T L+PR+A Y F ++ +D+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGPLAAHVAQTVTGRT---LRPRYAEYLPFTDEDGQQLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F PHS+TGEDV+EL GHGGP+++ ML+ L+I G+R A PGEF++RAFLN+K
Sbjct: 63 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIK---GVRPARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FSK I+ L++ LI+LR +E + DFPEE
Sbjct: 120 MDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + + VEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DAVEKIGIERAWEE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D + TD + P NI + + NK D +G I + N
Sbjct: 292 IRQADRVLFMVDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGESLGICHVNQP 351
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G++ LR L + + + + E ++AR RH+ +L A +L+ I
Sbjct: 352 TLIRLSAKTGQGVDALRQHLKECMGFSGSQEGG-FMARRRHLDALERAAEHLA-----IG 405
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 406 QQQLEGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|197364644|ref|YP_002144281.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|254811495|sp|B5BIL9.1|MNME_SALPK RecName: Full=tRNA modification GTPase MnmE
gi|197096121|emb|CAR61717.1| thiophene and furan oxidation protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
Length = 454
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 282/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F + +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKLPK---PRYADYLPFKDVDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D N +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAN-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D I P N+P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + + LSA G+++LRN L + +E +LAR RH+ +L EA +L
Sbjct: 347 SEVNGHSLVRLSARTGEGVDVLRNNLKQSMGFETNMEGG-FLARRRHLQALAEAANHLEQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|262172771|ref|ZP_06040449.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio mimicus
MB-451]
gi|261893847|gb|EEY39833.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio mimicus
MB-451]
Length = 453
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 193/468 (41%), Positives = 280/468 (59%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG + + V +T L+PR+A Y F +N +D+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGPLAAHVAQTVTGRT---LRPRYAEYLPFTDENGQQLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F PHS+TGEDV+EL GHGGP+++ ML+ L+I G+R A PGEF++RAFLN+K
Sbjct: 63 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIN---GVRPARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FSK I+ L++ LI+LR +E + DFPEE
Sbjct: 120 MDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + + VEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DAVEKIGIERAWEE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D + TD + + P NI + + NK D +G I + N
Sbjct: 292 IRQADRVLFMVDGTTTEATDPQEIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQP 351
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G++ LR L + + E ++AR RH+ +L A +L I
Sbjct: 352 TLIRLSAKTGQGVDALRQHLKECMGFAGNQEGG-FMARRRHLDALERAAEHLD-----IG 405
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 406 QQQLEGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|90581133|ref|ZP_01236932.1| tRNA modification GTPase [Photobacterium angustum S14]
gi|90437654|gb|EAS62846.1| tRNA modification GTPase [Vibrio angustum S14]
Length = 455
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 192/468 (41%), Positives = 286/468 (61%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ ATPPGRGGVGIIR+SG E+ ++LK R+A Y F ++ +D+G+
Sbjct: 8 IVAQATPPGRGGVGIIRVSGPKAK---EVALAVAGRELKTRYAEYLPFKNEDGTALDQGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++FK P+S+TGEDV+EL GHGGP+++ M++ L+I G+R A PGEF++RAF+N+K
Sbjct: 65 ALFFKGPNSFTGEDVLELQGHGGPVLMDMMIRRILKID---GIRAARPGEFSERAFMNDK 121
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AAKSA SL G FS +N L++ LI+LR +E + DFPEE
Sbjct: 122 LDLAQAEAIADLIDASSEEAAKSAFKSLQGAFSTKVNELVEALIHLRIFVEAAIDFPEEE 181
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L I +L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 182 IDF-LSDGKVGGDLNGIIDRLNAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 240
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
D AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E
Sbjct: 241 DSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWDE 293
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
+ ++D ++++ D+ TD + I+ P ++ + + NK + +G Q I + NN
Sbjct: 294 IAHADRVLFMVDSTTTDATDPKEIWPDFIERLPADMGLTVIRNKAELTGEQAGICHANNP 353
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G++ LR L + + T E ++AR RH+ +L A +L+ I
Sbjct: 354 TLIRLSARTGDGVDALREHLKQCMGFSGTTEGG-FMARRRHLDALERAAEHLA----IGK 408
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + F E++AE+LR + LS I G+ T++DLL IF+ FCIGK
Sbjct: 409 EQLEGFMAG-EILAEELRLAQQHLSEITGEFTSDDLLGRIFTSFCIGK 455
>gi|440289820|ref|YP_007342585.1| tRNA modification GTPase TrmE [Enterobacteriaceae bacterium strain
FGI 57]
gi|440049342|gb|AGB80400.1| tRNA modification GTPase TrmE [Enterobacteriaceae bacterium strain
FGI 57]
Length = 467
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 192/475 (40%), Positives = 282/475 (59%), Gaps = 23/475 (4%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
+++ N II ATPPGRGGVGI+R+SG + E V K K PR+A Y F +
Sbjct: 13 IMSHNDTIIAQATPPGRGGVGILRISGLKAREVAEAVLGKLPK---PRYADYLPFKDVDG 69
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++
Sbjct: 70 TALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIAKPGEFSE 126
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 127 RAFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAA 186
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 187 IDFPDEEIDF-LSDGKIEAQLNNVMTDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSL 245
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IG
Sbjct: 246 LNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIG 298
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
IER W E++ +D ++++ D D I P N+P+ V NK D +G +
Sbjct: 299 IERAWQEIEQADRVLFMVDGTTTDAVDPATIWPDFIARLPANLPITVVRNKADITGEPQG 358
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
++ N + + LSA G+ +LRN L + +E +LAR RH+ +L +A +L
Sbjct: 359 LSEVNGHSLVRLSARTGDGVEVLRNHLKQSMGFETNMEGG-FLARRRHLQALEQAAEHLQ 417
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 418 QGKAQLLGAWAG-----ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 467
>gi|283787594|ref|YP_003367459.1| tRNA modification GTPase [Citrobacter rodentium ICC168]
gi|282951048|emb|CBG90726.1| probable tRNA modification GTPase [Citrobacter rodentium ICC168]
Length = 454
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 192/474 (40%), Positives = 281/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K + PR+A Y F +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKAREVAEAVLGKLPR---PRYADYLPFKDADGA 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNEVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D I P +P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPVEIWPDFIARLPAKLPITVVRNKADITGEALGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + + LSA G+++LRN L + +E +LAR RH+ +L EA +L
Sbjct: 347 SEVNGHSLVRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALAEAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKGQLLGAWAG-----ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|270264114|ref|ZP_06192381.1| tRNA modification GTPase mnmE [Serratia odorifera 4Rx13]
gi|270041763|gb|EFA14860.1| tRNA modification GTPase mnmE [Serratia odorifera 4Rx13]
Length = 455
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 192/475 (40%), Positives = 283/475 (59%), Gaps = 23/475 (4%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M + I+ ATPPGRGGVGI+R+SG+ + + K K PR+A Y F
Sbjct: 1 MSSTTDTIVAQATPPGRGGVGILRISGRGAKDAAQALLGKLPK---PRYADYLPFRDAAG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++
Sbjct: 58 ATLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRVLAL---PGVRIARPGEFSE 114
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI+AS+E AA+SAM SL G FS I+ L++ L +LR +E +
Sbjct: 115 RAFLNDKLDLAQAEAIADLIDASSEQAARSAMNSLQGAFSTRIHQLVEALTHLRIYVEAA 174
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 IDFPDEEIDF-LSDGKIEAQLNGVMADLDNVRAEARQGSLLREGMKVVIAGRPNAGKSSL 233
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G D AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IG
Sbjct: 234 LNALAGRDAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIG 286
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
IER W E++ +D ++++ D T+ + + + P ++P+ V NK D +G
Sbjct: 287 IERAWNEIEQADRVLFMVDGTTTAATEPAEIWPEFMARLPHSLPITVVRNKADITGETLG 346
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
+ N + I LSA GI+LLR+ L + T +E +LAR RH+ +L +A +L
Sbjct: 347 MTEVNGHSLIRLSARTGEGIDLLRDHLKQSMGFTSNMEGG-FLARRRHLQALEQAALHLV 405
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 EGKEQLVSAYAG-----ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 455
>gi|365972831|ref|YP_004954392.1| tRNA modification GTPase mnmE [Enterobacter cloacae EcWSU1]
gi|365751744|gb|AEW75971.1| tRNA modification GTPase mnmE [Enterobacter cloacae EcWSU1]
Length = 454
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 280/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKAREVAEAVLGKLPK---PRYADYLPFKDTDGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 58 PLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIAKPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNSVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D I P +P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARLPAKLPITVVRNKADVTGETLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + I LSA G++ LRN L + ++E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHSLIRLSARTGEGVDDLRNHLKQSMGFDTSMEGG-FLARRRHLQALEDAARHLDQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|419791054|ref|ZP_14316710.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|392621409|gb|EIX03767.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
Length = 454
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 283/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F + +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKLPK---PRYADYLPFKDVDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PNVGKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNVGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D I P N+P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + + LSA G+++LRN L + +E +LAR RH+ +L EA +L
Sbjct: 347 SEVNGHSLVRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALAEAAEHLEQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKTQLLGAWAG-----ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|89074711|ref|ZP_01161169.1| tRNA modification GTPase [Photobacterium sp. SKA34]
gi|89049475|gb|EAR55036.1| tRNA modification GTPase [Photobacterium sp. SKA34]
Length = 455
Score = 353 bits (905), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 192/468 (41%), Positives = 285/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ ATPPGRGGVGIIR+SG E+ ++LK R+A Y F ++ +D+G+
Sbjct: 8 IVAQATPPGRGGVGIIRVSGPKAK---EVALAVAGRELKTRYAEYLPFKNEDGTALDQGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++FK P+S+TGEDV+EL GHGGP+++ M++ L+I G+R A PGEF++RAF+N+K
Sbjct: 65 ALFFKGPNSFTGEDVLELQGHGGPVLMDMMIRRILKID---GIRAARPGEFSERAFMNDK 121
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AAKSA SL G FS +N L++ LI+LR +E + DFPEE
Sbjct: 122 LDLAQAEAIADLIDASSEEAAKSAFKSLQGAFSTKVNELVEALIHLRIFVEAAIDFPEEE 181
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L I +L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 182 IDF-LSDGKVGGDLNGIIDRLNAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 240
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
D AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E
Sbjct: 241 DSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWDE 293
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
+ ++D ++++ D TD + I+ P ++ + + NK + +G Q I + NN
Sbjct: 294 IAHADRVLFMVDGTTTDATDPKEIWPDFIERLPADMGLTVIRNKAELTGEQTGICHANNP 353
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G++ LR L + + T E ++AR RH+ +L A +L+ I
Sbjct: 354 TLIRLSARTGDGVDALREHLKQCMGFSGTTEGG-FMARRRHLDALERAAEHLA----IGK 408
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + F E++AE+LR + LS I G+ T++DLL IF+ FCIGK
Sbjct: 409 EQLEGFMAG-EILAEELRLAQQHLSEITGEFTSDDLLGRIFTSFCIGK 455
>gi|333929843|ref|YP_004503422.1| tRNA modification GTPase mnmE [Serratia sp. AS12]
gi|333934796|ref|YP_004508374.1| tRNA modification GTPase mnmE [Serratia plymuthica AS9]
gi|386331666|ref|YP_006027836.1| tRNA modification GTPase mnmE [Serratia sp. AS13]
gi|333476403|gb|AEF48113.1| tRNA modification GTPase mnmE [Serratia plymuthica AS9]
gi|333493903|gb|AEF53065.1| tRNA modification GTPase mnmE [Serratia sp. AS12]
gi|333963999|gb|AEG30772.1| tRNA modification GTPase mnmE [Serratia sp. AS13]
Length = 454
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 191/474 (40%), Positives = 283/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ I+ ATPPGRGGVGI+R+SG+ + + K K PR+A Y F
Sbjct: 1 MSTTDTIVAQATPPGRGGVGILRISGRGAKDAAQALLGKLPK---PRYADYLPFRDAAGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++R
Sbjct: 58 TLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRVLAL---PGVRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SAM SL G FS I+ L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSAMNSLQGAFSTRIHQLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNGVMADLDNVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G D AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGRDAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D T+ + + + P ++P+ V NK D +G +
Sbjct: 287 ERAWNEIEQADRVLFMVDGTTTAATEPAEIWPEFMARLPHSLPITVVRNKADITGETLGM 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N + I LSA GI+LLR+ L + T +E +LAR RH+ +L +A +L
Sbjct: 347 TEVNGHSLIRLSARTGEGIDLLRDHLKQSMGFTSNMEGG-FLARRRHLQALEQAAQHLVE 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKEQLVSAYAG-----ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|254483166|ref|ZP_05096399.1| tRNA modification GTPase TrmE [marine gamma proteobacterium
HTCC2148]
gi|214036537|gb|EEB77211.1| tRNA modification GTPase TrmE [marine gamma proteobacterium
HTCC2148]
Length = 460
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 200/481 (41%), Positives = 279/481 (58%), Gaps = 30/481 (6%)
Query: 1 MLTKN----SPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFF 56
M+T N I IAT PGRGGVGI+RLSG I E + T L PR A +S F
Sbjct: 1 MITSNILDGDTIAAIATAPGRGGVGIVRLSGPEALVIGESISGLT---LSPRHAHFSKFK 57
Query: 57 CKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPG 116
N N++D G+ +YF PHS+TGEDV+ELHGHGGP++L +L+ +C+ + G R A PG
Sbjct: 58 NSNENVLDSGIALYFPGPHSFTGEDVVELHGHGGPVVLDLLIKTCI----NYGARQARPG 113
Query: 117 EFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTL 176
EF++RA+LN+K+DL Q EAI DLIN++TE AA +A SL G FS+ I+ L+ + LR
Sbjct: 114 EFSERAYLNDKIDLTQAEAIADLINSTTEHAALNASRSLQGVFSQKIDALVTSVTQLRVY 173
Query: 177 IEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVG 236
+E + DFPEE + I N+L I +L ++ Q K+ +L + G+ +V+ G+PN G
Sbjct: 174 VEAAIDFPEEEIDFI-QDGQVSNQLSAIIAQLNAVMHQAKQGSLQQEGMKLVIAGKPNAG 232
Query: 237 KSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEV 296
KSSL N+L G D AIVT+I GTTRD + + IQI+ I DTAG ++ + +EV
Sbjct: 233 KSSLLNALSGQDTAIVTAIEGTTRDVLREHIQIDGMPLHIVDTAG-------LRNSADEV 285
Query: 297 EKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKII-----KNFPMNIPVIYVWNKIDY 351
EK GI R W E++++D I+ V D + D +I ++F NIPV + NK D
Sbjct: 286 EKEGIRRAWNEIESADHILLVVDGSNPEQHSNDPSVIWPDFTEHFSRNIPVSVIRNKCDL 345
Query: 352 SGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNE 411
S H+ ++ N I LSA G+ LL+ L + Q E++ + AR RH+ SL
Sbjct: 346 SQHEPSVTDSVNYCTIELSAKTGAGMTLLKEHLKTCMGYRQGNETN-FSARRRHLLSLEG 404
Query: 412 ANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIG 471
A L+ + + EL+AEDLR C L I G +++ LL IFS FCIG
Sbjct: 405 AAKSLTAGQHQLENAGAG-----ELLAEDLRACQNLLGEITGAVSSDQLLGEIFSSFCIG 459
Query: 472 K 472
K
Sbjct: 460 K 460
>gi|16762483|ref|NP_458100.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|29143971|ref|NP_807313.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|213052691|ref|ZP_03345569.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213424947|ref|ZP_03357697.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213580794|ref|ZP_03362620.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
gi|213865392|ref|ZP_03387511.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
gi|378961835|ref|YP_005219321.1| tRNA modification GTPase mnmE [Salmonella enterica subsp. enterica
serovar Typhi str. P-stx-12]
gi|21363008|sp|Q8Z2N8.1|MNME_SALTI RecName: Full=tRNA modification GTPase MnmE
gi|25319370|pir||AE0957 thiophene and furan oxidation protein [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16504788|emb|CAD03153.1| thiophene and furan oxidation protein [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29139607|gb|AAO71173.1| thiophene and furan oxidation protein [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|374355707|gb|AEZ47468.1| tRNA modification GTPase mnmE [Salmonella enterica subsp. enterica
serovar Typhi str. P-stx-12]
Length = 454
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 282/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F + +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKLPK---PRYADYLPFKDVDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D N +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAN-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D I P N+P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + + LSA G+++LRN L + +E +LAR RH+ +L EA +L
Sbjct: 347 SEVNGHSLVRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALAEAANHLEQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|268593483|ref|ZP_06127704.1| tRNA modification GTPase TrmE [Providencia rettgeri DSM 1131]
gi|291310904|gb|EFE51357.1| tRNA modification GTPase TrmE [Providencia rettgeri DSM 1131]
Length = 454
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 198/472 (41%), Positives = 289/472 (61%), Gaps = 25/472 (5%)
Query: 5 NSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIID 64
N I+ ATPPGRGGVGI+R+SG + EIV K K PR+A Y F + +++D
Sbjct: 4 NDTIVAQATPPGRGGVGILRVSGPKAAQVAEIVLGKLPK---PRYADYLPFRDEEGSVLD 60
Query: 65 KGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFL 124
+G+ +YF P+S+TGEDV+EL GHGGP+IL +LL L I G+R+A PGEF++RAFL
Sbjct: 61 QGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLRRILTID---GIRIANPGEFSERAFL 117
Query: 125 NNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFP 184
N+KLDL Q EAI DLI+AS+E AA+SAM SL G FS I+ L++ L +LR +E + DFP
Sbjct: 118 NDKLDLAQAEAIADLIDASSEQAARSAMNSLQGAFSSHIHQLVEALTHLRIYVEAAIDFP 177
Query: 185 EENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSL 244
+E + L+ +L ++ L ++ Q ++ +L+R G+ VV+ G+PN GKSSL N+L
Sbjct: 178 DEEIDF-LSDGKIEAKLNEVVADLEQVRSQARQGSLLREGMKVVIAGRPNAGKSSLLNAL 236
Query: 245 VGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304
G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER
Sbjct: 237 AGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERA 289
Query: 305 WVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYK 361
W E++ +D ++++ D+ T+ + + + P +PV + NK D +G
Sbjct: 290 WKEIEQADHVLFMVDSTTTNATEPQEIWPEFMARLPDELPVTVIRNKADMTGEPVEFIDN 349
Query: 362 NNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI- 420
I LSA + GI+LLR+ L + I E +LAR RH+ +LN A +L
Sbjct: 350 TRYPLIRLSAREEKGIDLLRDHLKEAIGFNSNTEGG-FLARSRHLQALNAAAVHLEQGYD 408
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++N ++ EL+AE+LR ++LS I G+ T++DLL IFS FCIGK
Sbjct: 409 QLVNA------RSGELLAEELRLAQQELSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|77461959|ref|YP_351466.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens Pf0-1]
gi|123602666|sp|Q3K429.1|MNME_PSEPF RecName: Full=tRNA modification GTPase MnmE
gi|77385962|gb|ABA77475.1| putative tRNA modification GTPase [Pseudomonas fluorescens Pf0-1]
Length = 456
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 196/478 (41%), Positives = 284/478 (59%), Gaps = 28/478 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKK-TKKQLKPRFATYSSFFCKN 59
M I +AT GRGGVGI+R+SG + + K + ++LKPRFA Y FF N
Sbjct: 1 MSAPRETIAAVATAQGRGGVGIVRISGP----LASVAAKAISGRELKPRFAHYGPFFSDN 56
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFT 119
++D+GL +YF P+S+TGEDV+EL GHGGPI+L MLL CLE +G RLA PGEF+
Sbjct: 57 QQVLDEGLALYFPGPNSFTGEDVLELQGHGGPIVLDMLLKRCLE----LGCRLARPGEFS 112
Query: 120 KRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEF 179
+RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G FS+ ++ L ++LI LR +E
Sbjct: 113 ERAFLNDKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVHNLTEQLIGLRIYVEA 172
Query: 180 SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
+ DFPEE + + + + + L K++ +L ++++ + AL+R+G+ VV+ G+PN GKSS
Sbjct: 173 AIDFPEEEIDFLADGH-VLSMLDKVRNELSTVLREAGQGALLRDGMTVVIAGRPNAGKSS 231
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + + VEKI
Sbjct: 232 LLNALAGREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTD-------DHVEKI 284
Query: 300 GIERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356
G+ER + +D ++ V DA + D + ++ P V + NK D +G
Sbjct: 285 GVERALKAIGEADRVLLVVDATAPEAADPFALWPEFLETRPDPAKVTLIRNKADLTGEPI 344
Query: 357 NINYKNN-IANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ ++ I LSA S G++LLR+ L + QT ESS + AR RH+ +L A+
Sbjct: 345 ALEVSDDGHVTISLSAKSAGEGLDLLRDHLKACMGYEQTSESS-FSARRRHLEALRHASD 403
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L +++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 404 ALEH-----GRAQLTLAGAGELLAEDLRQAQQSLGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|254282403|ref|ZP_04957371.1| tRNA modification GTPase TrmE [gamma proteobacterium NOR51-B]
gi|219678606|gb|EED34955.1| tRNA modification GTPase TrmE [gamma proteobacterium NOR51-B]
Length = 450
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 195/471 (41%), Positives = 271/471 (57%), Gaps = 37/471 (7%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IATPPGRGGVGIIRLSG I E +C L PR A + SF + N+ ID G+
Sbjct: 11 IAAIATPPGRGGVGIIRLSGPRALPIAEAICGGP---LAPRTAHFRSFSDQQNDAIDNGI 67
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+ F APHS+TGEDV+EL GHGGP+I +LL CLE+G R+A PGEF++RAFLN+K
Sbjct: 68 ALSFPAPHSFTGEDVVELQGHGGPVIQSLLLERCLELGA----RMARPGEFSERAFLNDK 123
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL+Q EAI DLI+A T SAAK A SLSG+FS + L +++LR +E + DFP+E+
Sbjct: 124 IDLVQAEAIADLIDAQTRSAAKQAKASLSGRFSDQLTALAGTILDLRKYVEAAIDFPDED 183
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L + +L + +++ ++ A++R G VVL G+PN GKSSL N L G
Sbjct: 184 IDF-LAEGKVAGQLTALANNAKELLAGARRGAIVRAGAQVVLAGKPNAGKSSLMNRLAGD 242
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
VAIVT + GTTRD + + I++ +TDTAG+ D + + VE+ G++R
Sbjct: 243 AVAIVTDVPGTTRDLLRQPIELGGVALHLTDTAGLRD-------SEDTVEQEGVKRARSA 295
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIP------VIYVWNKIDYSGHQKNINYK 361
++ +D+I++V D D TD + P N + V+NKID SG +
Sbjct: 296 IEMADVILHVID---DTQTD-------SAPSNSTETIDGKTLLVYNKIDLSGRKPGHIEG 345
Query: 362 NNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIK 421
+ A + +S G+ LL ++ + E P+ ARERHI L N L+ A++
Sbjct: 346 ESTAAVAISTKTGAGMASFEEVLLGILGVSTDTE-DPFSARERHIRILETVNNSLATALE 404
Query: 422 IINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
S EL+AEDLR H++L I G+ TT DLL IFS FCIGK
Sbjct: 405 QFLLSGAG-----ELLAEDLRLTHDQLGEITGRVTTEDLLGEIFSNFCIGK 450
>gi|206578096|ref|YP_002241307.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae 342]
gi|288937945|ref|YP_003442004.1| tRNA modification GTPase TrmE [Klebsiella variicola At-22]
gi|290511686|ref|ZP_06551054.1| tRNA modification GTPase TrmE [Klebsiella sp. 1_1_55]
gi|254811487|sp|B5XZP4.1|MNME_KLEP3 RecName: Full=tRNA modification GTPase MnmE
gi|206567154|gb|ACI08930.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae 342]
gi|288892654|gb|ADC60972.1| tRNA modification GTPase TrmE [Klebsiella variicola At-22]
gi|289775476|gb|EFD83476.1| tRNA modification GTPase TrmE [Klebsiella sp. 1_1_55]
Length = 454
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 192/474 (40%), Positives = 282/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKARDVAQAVLGKLPK---PRYADYLPFNDVDGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++R
Sbjct: 58 PLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNGVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + I+ P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTSAVDPAEIWPDFIERLPAKLPITVVRNKADVTGEALGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + I LSA G+ +LRN L + ++E +LAR RH+ +L EA +L
Sbjct: 347 SEVNGHSLIRLSARTGEGVEVLRNHLKQSMGFDTSMEGG-FLARRRHLQALEEAANHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|51598233|ref|YP_072424.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis IP
32953]
gi|186897489|ref|YP_001874601.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis PB1/+]
gi|81638080|sp|Q663S6.1|MNME_YERPS RecName: Full=tRNA modification GTPase MnmE
gi|254811499|sp|B2K868.1|MNME_YERPB RecName: Full=tRNA modification GTPase MnmE
gi|51591515|emb|CAH23187.1| putative thiophene and furan oxidation protein [Yersinia
pseudotuberculosis IP 32953]
gi|186700515|gb|ACC91144.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis PB1/+]
Length = 454
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 192/474 (40%), Positives = 282/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ I+ ATPPGRGGVGI+R+SG+ + V K K PR+A Y F + +
Sbjct: 1 MSTTDTIVAQATPPGRGGVGILRVSGRAASEVAHAVLGKLPK---PRYADYLPFKDVDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ +YF P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 58 TLDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILAL---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS I+ L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSARIHQLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L ++ + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ + N +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAN-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D T+ + + P +P+ V NK D +G +
Sbjct: 287 ERAWNEIEQADRVLFMVDGTTTDATEPAAIWPEFMARLPATLPITVVRNKADITGETLGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N + I LSA GI+LLR+ L + T E +LAR RH+ +L A +L
Sbjct: 347 TKVNGHSLIRLSARTGEGIDLLRDHLKQSMGFTSNTEGG-FLARRRHLQALETAARHLVQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + + EL+AE+LR + LS I G+ +++DLL IFS FCIGK
Sbjct: 406 GHEQLVSAYAG-----ELLAEELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454
>gi|170026449|ref|YP_001722954.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis YPIII]
gi|205829188|sp|B1JRQ1.1|MNME_YERPY RecName: Full=tRNA modification GTPase MnmE
gi|169752983|gb|ACA70501.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis YPIII]
Length = 454
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 283/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ I+ ATPPGRGGVGI+R+SG+ + V K K PR+A Y F + +
Sbjct: 1 MSTTDTIVAQATPPGRGGVGILRVSGRAASEVAHAVLGKLPK---PRYADYLPFKDVDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ +YF P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 58 TLDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILAL---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS I+ L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSARIHQLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L ++ + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ + N +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAN-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D T+ + + P +P+ V NK D +G +
Sbjct: 287 ERAWNEIEQADRVLFMVDGTTTDATEPAAIWPEFMARLPATLPITVVRNKADITGETLGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N + I LSA GI+LLR+ L + T E +LAR RH+ +L A +L
Sbjct: 347 TEVNGHSLIRLSARTGEGIDLLRDHLKQSMGFTSNTEGG-FLARRRHLQALETAARHL-- 403
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
I+ Q + EL+AE+LR + LS I G+ +++DLL IFS FCIGK
Sbjct: 404 -IQGHEQLVSAYAG--ELLAEELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454
>gi|157368276|ref|YP_001476265.1| tRNA modification GTPase TrmE [Serratia proteamaculans 568]
gi|166991115|sp|A8G7P7.1|MNME_SERP5 RecName: Full=tRNA modification GTPase MnmE
gi|157320040|gb|ABV39137.1| tRNA modification GTPase TrmE [Serratia proteamaculans 568]
Length = 454
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 190/474 (40%), Positives = 283/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ I+ ATPPGRGGVGI+R+SG+ + + + K K PR+A Y F
Sbjct: 1 MSTTDTIVAQATPPGRGGVGILRISGRGAKDVAQALLGKLPK---PRYADYLPFRDAAGA 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++R
Sbjct: 58 TLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRVLAL---PGMRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SAM SL G FS I+ L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSAMNSLQGAFSTRIHQLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNGVMADLDSVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D T+ + + + P +P+ V NK D +G +
Sbjct: 287 ERAWNEIEQADRVLFMVDGTTTAATEPAEIWPEFMARLPHRLPITVVRNKADITGETLGM 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N + I LSA GI+LLR+ L + T +E +LAR RH+ +L +A +L
Sbjct: 347 TEVNGHSLIRLSARTGEGIDLLRDHLKQSMGFTSNMEGG-FLARRRHLQALEQAAQHLVE 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKEQLVSAYAG-----ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|165976918|ref|YP_001652511.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|303251175|ref|ZP_07337358.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|303252998|ref|ZP_07339152.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|307248533|ref|ZP_07530550.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|307250764|ref|ZP_07532696.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|307253139|ref|ZP_07535019.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307257560|ref|ZP_07539322.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|205829051|sp|B0BR82.1|MNME_ACTPJ RecName: Full=tRNA modification GTPase MnmE
gi|165877019|gb|ABY70067.1| tRNA modification GTPase [Actinobacillus pleuropneumoniae serovar 3
str. JL03]
gi|302648130|gb|EFL78332.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|302649975|gb|EFL80148.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306854956|gb|EFM87142.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|306857200|gb|EFM89324.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306859382|gb|EFM91415.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306863936|gb|EFM95857.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
Length = 452
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 199/472 (42%), Positives = 290/472 (61%), Gaps = 31/472 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKT-KKQLKPRFATYSSFFCKNNNIIDKG 66
I+ ATP GRGGVGI+R+SG + + V K+ K+LKPR A Y F ++ ++D+G
Sbjct: 5 IVAQATPIGRGGVGILRISG----PLAQEVAKEVLGKELKPRLANYLPFKDQDGTVLDQG 60
Query: 67 LVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNN 126
+ ++FKAP+S+TGEDV+EL GHGG +IL +LL L I G+R+A GEF+++AFLN+
Sbjct: 61 IALFFKAPNSFTGEDVLELQGHGGQVILDILLKRILTIK---GIRIARAGEFSEQAFLND 117
Query: 127 KLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEE 186
KLDL Q EAI DLI+A++E AA+SA+ SL G+FS IN L+D +I LRT +E + DFP+E
Sbjct: 118 KLDLAQAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDE 177
Query: 187 NQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVG 246
+ L L I ++L + ++ K+ A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 178 EIDF-LADGKIEGHLNDIIRQLNGVRKEAKQGAILREGMKVVIAGRPNAGKSSLLNALAG 236
Query: 247 SDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWV 306
+ AIVT+IAGTTRD + + I I+ I DTAG +++ +EVEKIGI+R W
Sbjct: 237 REAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVEKIGIQRAWD 289
Query: 307 ELKNSDIIIYVQDARYDKHTDFDKK---IIKNFPMNIPVIYVWNKIDYSGHQKNINYKNN 363
E++ +D ++ + D+ F + + P NIPV + NK+D SG + + +
Sbjct: 290 EIEQADHVLLMIDSTEQTAEAFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDG 349
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP---YLARERHIHSLNEANYYLSCAI 420
I LSA ++G++LLR L +K+ +SS +LAR RH+ +L A +L
Sbjct: 350 FTLIRLSAQTKVGVDLLREHL----KKSMGYQSSTEGGFLARRRHLQALETAAEHLERGH 405
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ Q EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 406 IQLTQFFAG-----ELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 452
>gi|386017831|ref|YP_005936131.1| tRNA modification GTPase TrmE [Pantoea ananatis AJ13355]
gi|327395913|dbj|BAK13335.1| tRNA modification GTPase TrmE [Pantoea ananatis AJ13355]
Length = 454
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 191/474 (40%), Positives = 283/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ + I+ AT PGRGGVGI+R+SG + + + K K PR+A Y SF + +
Sbjct: 1 MSHSDTIVAQATSPGRGGVGILRISGPRAAEVAQQILGKLPK---PRYADYLSFNDSDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F PHS+TGEDV+EL GHGGP+IL +LL + + GLR+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPHSFTGEDVLELQGHGGPVILDLLLKRIVAL---PGLRIAQPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS IN L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSVRINHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + K+ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEGQLNTVISDLDAVRAEAKQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D T+ + + P +P+ V NK D +G + +
Sbjct: 287 ERAWHEIEQADRVLFMVDGTTTDATEPAEIWPDFVARLPPQLPITVVRNKADITGEARGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N A I LSA G++ LR+ L + +E +LAR RH+ +L A +L
Sbjct: 347 TNANGHALIRLSARTSEGLDTLRDHLKQTMGFADNMEGG-FLARRRHLQALELAATHLEQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+S+ EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 -----GKSQLLGAWAGELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|429463088|ref|YP_007184551.1| tRNA modification GTPase [Candidatus Kinetoplastibacterium
crithidii (ex Angomonas deanei ATCC 30255)]
gi|451811871|ref|YP_007448326.1| tRNA modification GTPase [Candidatus Kinetoplastibacterium
crithidii TCC036E]
gi|429338602|gb|AFZ83025.1| tRNA modification GTPase [Candidatus Kinetoplastibacterium
crithidii (ex Angomonas deanei ATCC 30255)]
gi|451777029|gb|AGF48028.1| tRNA modification GTPase [Candidatus Kinetoplastibacterium
crithidii TCC036E]
Length = 446
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 203/470 (43%), Positives = 302/470 (64%), Gaps = 29/470 (6%)
Query: 5 NSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIID 64
NSPI+ I+T G+G +GI+R+SGK+L +++ K+L R Y F N IID
Sbjct: 4 NSPIVAISTATGKGAIGIVRVSGKDLSTLM---MNLFGKKLDNRRVYYLPFKNTENLIID 60
Query: 65 KGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFL 124
KG+ I+FK+P S+TGED++EL HGG +++H +L+ C++ G+ IG+R++ PGEFTKRAFL
Sbjct: 61 KGIAIFFKSPKSFTGEDILELQCHGGIVVIHEILNLCIDHGRDIGVRISEPGEFTKRAFL 120
Query: 125 NNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFP 184
N ++DL Q EAI D+I+A + A++SA+I+LSG+ S+ IN L D ++ LR ++E + DF
Sbjct: 121 NGRIDLAQAEAIADIIDAVSIEASRSALIALSGEPSRAINALSDDIMKLRVIVEANIDFS 180
Query: 185 EENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSL 244
EE+ +++ KN L K + LL I++ K+ ++NG+NVV+ G+PNVGKSSL N+L
Sbjct: 181 EEDI-ILIEKNKILASLEKTSQNLLTFIKKTKQGITLKNGINVVIAGEPNVGKSSLLNAL 239
Query: 245 VGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304
+VAIVT I GTTRDKI I IN L I DTAGI + N I E IGI+++
Sbjct: 240 SEEEVAIVTDIPGTTRDKIINEISINGILINIIDTAGIRESNDYI-------ENIGIKKS 292
Query: 305 WVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
E++ +D+I+ +QD + + FP IP+I V NK D +KN N
Sbjct: 293 LEEIEKADLILLIQDITKPQKPNI------IFPNGIPIITVLNKSDII--EKNFCIAKN- 343
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
++ +SA+K+IG++LLR +L+ I +T E S +++RERH+ L ++ ++ AI
Sbjct: 344 DDLLISATKKIGLDLLREKILETIGLNKT-EESRWISRERHLFCLIDSLEHIQTAITY-- 400
Query: 425 QSEKNFEKN--LELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+KN ++LIAE+LR H+ LS I G+ TT D+LDNIFS+FCIGK
Sbjct: 401 ----TLDKNPQIDLIAEELRLSHKNLSKITGQFTTEDILDNIFSKFCIGK 446
>gi|398989707|ref|ZP_10692940.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM24]
gi|399012801|ref|ZP_10715119.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM16]
gi|398115045|gb|EJM04840.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM16]
gi|398146933|gb|EJM35657.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM24]
Length = 456
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 196/478 (41%), Positives = 284/478 (59%), Gaps = 28/478 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKK-TKKQLKPRFATYSSFFCKN 59
M T I +AT GRGGVGI+R+SG + + K + ++LKPR+A Y FF +
Sbjct: 1 MSTPRETIAAVATAQGRGGVGIVRISGP----LASVAAKAISGRELKPRYAHYGPFFSDD 56
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFT 119
++D+GL +YF P+S+TGEDV+EL GHGGPI+L MLL CLE+G RLA PGEF+
Sbjct: 57 QQVLDEGLALYFPGPNSFTGEDVLELQGHGGPIVLDMLLKRCLELG----CRLARPGEFS 112
Query: 120 KRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEF 179
+RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G FS+ ++ L ++LI LR +E
Sbjct: 113 ERAFLNDKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVHNLTEQLIGLRIYVEA 172
Query: 180 SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
+ DFPEE + + + + N L K++ +L ++++ + AL+R+G+ VV+ G+PN GKSS
Sbjct: 173 AIDFPEEEIDFLADGH-VLNMLDKVRNELSTVLREAGQGALLRDGMTVVIAGRPNAGKSS 231
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + + VEKI
Sbjct: 232 LLNALAGREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTD-------DHVEKI 284
Query: 300 GIERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356
G+ER + +D ++ V DA + D + ++ P V + NK D +G
Sbjct: 285 GVERALKAIGEADRVLLVVDATAPEALDPFALWPEFLETRPDPAKVTLIRNKADLTGEAI 344
Query: 357 NINY-KNNIANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ ++ I LSA S G++LLR+ L + QT ESS + AR RH+ +L A+
Sbjct: 345 ALETSEDGHVTISLSAKSAGEGLDLLRDHLKACMGYEQTSESS-FSARRRHLEALRHASA 403
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L +++ EL+AEDLR L I G +++DLL IFS FCIGK
Sbjct: 404 ALEH-----GRAQLTLAGAGELLAEDLRQAQHSLGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|398920330|ref|ZP_10659247.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM49]
gi|398168339|gb|EJM56360.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM49]
Length = 456
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 196/478 (41%), Positives = 284/478 (59%), Gaps = 28/478 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKK-TKKQLKPRFATYSSFFCKN 59
M I +AT GRGGVGI+R+SG + + K + ++LKPRFA Y FF +N
Sbjct: 1 MSVPRETIAAVATAQGRGGVGIVRISGP----LASVAAKAFSGRELKPRFAHYGPFFSEN 56
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFT 119
+ ++D+GL +YF P+S+TGEDV+EL GHGGPI+L MLL CLE +G RLA PGEF+
Sbjct: 57 DEVLDQGLALYFPGPNSFTGEDVLELQGHGGPIVLDMLLKRCLE----LGCRLARPGEFS 112
Query: 120 KRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEF 179
+RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G FS ++ L ++LI LR +E
Sbjct: 113 ERAFLNDKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSSRVHNLTEQLIGLRIYVEA 172
Query: 180 SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
+ DFPEE + + + + + L K++ +L ++++ + AL+R+G+ VV+ G+PN GKSS
Sbjct: 173 AIDFPEEEIDFLADGH-VLSMLDKVRDELSTVMREAGQGALLRDGMTVVIAGRPNAGKSS 231
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + + VEKI
Sbjct: 232 LLNALAGREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTD-------DHVEKI 284
Query: 300 GIERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356
G+ER + +D ++ V DA + D + ++ P V + NK D +G
Sbjct: 285 GVERALKAIGEADRVLLVVDATAPEALDPFALWPEFLEIRPDPAKVTLIRNKADLTGEAI 344
Query: 357 NINY-KNNIANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ ++ I LSA S G+ LLR+ L + QT ESS + AR RH+ +L A+
Sbjct: 345 ALEVSQDGHVTISLSAKSGGAGLELLRDHLKACMGYEQTSESS-FSARRRHLEALRHASA 403
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L +++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 404 ALEH-----GRAQLTLAGAGELLAEDLRQAQQSLGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|378701727|ref|YP_005183685.1| thiophene and furan oxidation protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|301160376|emb|CBW19901.1| thiophene and furan oxidation protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
Length = 458
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 282/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F + +
Sbjct: 5 MSHNDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKLPK---PRYADYLPFKDVDGS 61
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++R
Sbjct: 62 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSER 118
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 119 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 178
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 179 DFPDEEIDF-LSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLL 237
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 238 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 290
Query: 302 ERTWVELKNSDIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D I P N+P+ V NK D +G I
Sbjct: 291 ERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGI 350
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + + LSA GI++LRN L + +E +LAR RH+ +L EA +L
Sbjct: 351 SEVNGHSLVRLSARTGEGIDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALAEAAEHLEQ 409
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 410 GKAQLLGAWAG-----ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 458
>gi|22127986|ref|NP_671409.1| tRNA modification GTPase TrmE [Yersinia pestis KIM10+]
gi|45443733|ref|NP_995272.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Microtus str.
91001]
gi|108810138|ref|YP_654054.1| tRNA modification GTPase TrmE [Yersinia pestis Antiqua]
gi|108814120|ref|YP_649887.1| tRNA modification GTPase TrmE [Yersinia pestis Nepal516]
gi|145601169|ref|YP_001165245.1| tRNA modification GTPase TrmE [Yersinia pestis Pestoides F]
gi|150260963|ref|ZP_01917691.1| putative thiophene and furan oxidation protein [Yersinia pestis
CA88-4125]
gi|162421232|ref|YP_001608454.1| tRNA modification GTPase TrmE [Yersinia pestis Angola]
gi|165926155|ref|ZP_02221987.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165939964|ref|ZP_02228501.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Orientalis
str. IP275]
gi|166009545|ref|ZP_02230443.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166213299|ref|ZP_02239334.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167401538|ref|ZP_02307032.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167422868|ref|ZP_02314621.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167425489|ref|ZP_02317242.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|229839810|ref|ZP_04459969.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia
pestis biovar Orientalis str. PEXU2]
gi|229841895|ref|ZP_04462051.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia
pestis biovar Orientalis str. India 195]
gi|229896772|ref|ZP_04511935.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia
pestis Pestoides A]
gi|229904660|ref|ZP_04519771.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia
pestis Nepal516]
gi|270488372|ref|ZP_06205446.1| tRNA modification GTPase TrmE [Yersinia pestis KIM D27]
gi|294505627|ref|YP_003569689.1| tRNA modification GTPase [Yersinia pestis Z176003]
gi|384124196|ref|YP_005506816.1| tRNA modification GTPase [Yersinia pestis D106004]
gi|384128064|ref|YP_005510678.1| tRNA modification GTPase [Yersinia pestis D182038]
gi|384138047|ref|YP_005520749.1| tRNA modification GTPase TrmE [Yersinia pestis A1122]
gi|384416929|ref|YP_005626291.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia
pestis biovar Medievalis str. Harbin 35]
gi|420549349|ref|ZP_15047070.1| tRNA modification GTPase TrmE [Yersinia pestis PY-01]
gi|420554702|ref|ZP_15051844.1| tRNA modification GTPase TrmE [Yersinia pestis PY-02]
gi|420560337|ref|ZP_15056726.1| tRNA modification GTPase TrmE [Yersinia pestis PY-03]
gi|420565702|ref|ZP_15061563.1| tRNA modification GTPase TrmE [Yersinia pestis PY-04]
gi|420570724|ref|ZP_15066132.1| tRNA modification GTPase TrmE [Yersinia pestis PY-05]
gi|420576416|ref|ZP_15071271.1| tRNA modification GTPase TrmE [Yersinia pestis PY-06]
gi|420581686|ref|ZP_15076070.1| tRNA modification GTPase TrmE [Yersinia pestis PY-07]
gi|420587104|ref|ZP_15080972.1| tRNA modification GTPase TrmE [Yersinia pestis PY-08]
gi|420592189|ref|ZP_15085542.1| tRNA modification GTPase TrmE [Yersinia pestis PY-09]
gi|420597583|ref|ZP_15090394.1| tRNA modification GTPase TrmE [Yersinia pestis PY-10]
gi|420603271|ref|ZP_15095438.1| tRNA modification GTPase TrmE [Yersinia pestis PY-11]
gi|420608652|ref|ZP_15100326.1| tRNA modification GTPase TrmE [Yersinia pestis PY-12]
gi|420614079|ref|ZP_15105188.1| tRNA modification GTPase TrmE [Yersinia pestis PY-13]
gi|420619408|ref|ZP_15109819.1| tRNA modification GTPase TrmE [Yersinia pestis PY-14]
gi|420624716|ref|ZP_15114618.1| tRNA modification GTPase TrmE [Yersinia pestis PY-15]
gi|420629685|ref|ZP_15119128.1| tRNA modification GTPase TrmE [Yersinia pestis PY-16]
gi|420634853|ref|ZP_15123756.1| tRNA modification GTPase TrmE [Yersinia pestis PY-19]
gi|420640129|ref|ZP_15128508.1| tRNA modification GTPase TrmE [Yersinia pestis PY-25]
gi|420645570|ref|ZP_15133492.1| tRNA modification GTPase TrmE [Yersinia pestis PY-29]
gi|420650903|ref|ZP_15138286.1| tRNA modification GTPase TrmE [Yersinia pestis PY-32]
gi|420656521|ref|ZP_15143350.1| tRNA modification GTPase TrmE [Yersinia pestis PY-34]
gi|420661965|ref|ZP_15148202.1| tRNA modification GTPase TrmE [Yersinia pestis PY-36]
gi|420667311|ref|ZP_15153024.1| tRNA modification GTPase TrmE [Yersinia pestis PY-42]
gi|420672175|ref|ZP_15157457.1| tRNA modification GTPase TrmE [Yersinia pestis PY-45]
gi|420677502|ref|ZP_15162310.1| tRNA modification GTPase TrmE [Yersinia pestis PY-46]
gi|420683089|ref|ZP_15167337.1| tRNA modification GTPase TrmE [Yersinia pestis PY-47]
gi|420688465|ref|ZP_15172125.1| tRNA modification GTPase TrmE [Yersinia pestis PY-48]
gi|420693774|ref|ZP_15176764.1| tRNA modification GTPase TrmE [Yersinia pestis PY-52]
gi|420699482|ref|ZP_15181793.1| tRNA modification GTPase TrmE [Yersinia pestis PY-53]
gi|420705423|ref|ZP_15186447.1| tRNA modification GTPase TrmE [Yersinia pestis PY-54]
gi|420710655|ref|ZP_15191192.1| tRNA modification GTPase TrmE [Yersinia pestis PY-55]
gi|420716152|ref|ZP_15196058.1| tRNA modification GTPase TrmE [Yersinia pestis PY-56]
gi|420721699|ref|ZP_15200788.1| tRNA modification GTPase TrmE [Yersinia pestis PY-58]
gi|420727125|ref|ZP_15205597.1| tRNA modification GTPase TrmE [Yersinia pestis PY-59]
gi|420732622|ref|ZP_15210543.1| tRNA modification GTPase TrmE [Yersinia pestis PY-60]
gi|420737610|ref|ZP_15215046.1| tRNA modification GTPase TrmE [Yersinia pestis PY-61]
gi|420743099|ref|ZP_15219984.1| tRNA modification GTPase TrmE [Yersinia pestis PY-63]
gi|420748811|ref|ZP_15224754.1| tRNA modification GTPase TrmE [Yersinia pestis PY-64]
gi|420760307|ref|ZP_15234451.1| tRNA modification GTPase TrmE [Yersinia pestis PY-66]
gi|420765430|ref|ZP_15239065.1| tRNA modification GTPase TrmE [Yersinia pestis PY-71]
gi|420770633|ref|ZP_15243718.1| tRNA modification GTPase TrmE [Yersinia pestis PY-72]
gi|420775601|ref|ZP_15248228.1| tRNA modification GTPase TrmE [Yersinia pestis PY-76]
gi|420781245|ref|ZP_15253172.1| tRNA modification GTPase TrmE [Yersinia pestis PY-88]
gi|420786861|ref|ZP_15258085.1| tRNA modification GTPase TrmE [Yersinia pestis PY-89]
gi|420791872|ref|ZP_15262604.1| tRNA modification GTPase TrmE [Yersinia pestis PY-90]
gi|420797446|ref|ZP_15267611.1| tRNA modification GTPase TrmE [Yersinia pestis PY-91]
gi|420802545|ref|ZP_15272196.1| tRNA modification GTPase TrmE [Yersinia pestis PY-92]
gi|420807875|ref|ZP_15277033.1| tRNA modification GTPase TrmE [Yersinia pestis PY-93]
gi|420813308|ref|ZP_15281883.1| tRNA modification GTPase TrmE [Yersinia pestis PY-94]
gi|420818735|ref|ZP_15286822.1| tRNA modification GTPase TrmE [Yersinia pestis PY-95]
gi|420824110|ref|ZP_15291615.1| tRNA modification GTPase TrmE [Yersinia pestis PY-96]
gi|420829163|ref|ZP_15296178.1| tRNA modification GTPase TrmE [Yersinia pestis PY-98]
gi|420834756|ref|ZP_15301221.1| tRNA modification GTPase TrmE [Yersinia pestis PY-99]
gi|420839686|ref|ZP_15305683.1| tRNA modification GTPase TrmE [Yersinia pestis PY-100]
gi|420844903|ref|ZP_15310412.1| tRNA modification GTPase TrmE [Yersinia pestis PY-101]
gi|420850551|ref|ZP_15315484.1| tRNA modification GTPase TrmE [Yersinia pestis PY-102]
gi|420856308|ref|ZP_15320313.1| tRNA modification GTPase TrmE [Yersinia pestis PY-103]
gi|420861371|ref|ZP_15324803.1| tRNA modification GTPase TrmE [Yersinia pestis PY-113]
gi|421765623|ref|ZP_16202406.1| tRNA modification GTPase TrmE [Yersinia pestis INS]
gi|123073044|sp|Q1CCJ3.1|MNME_YERPN RecName: Full=tRNA modification GTPase MnmE
gi|123245359|sp|Q1C0B3.1|MNME_YERPA RecName: Full=tRNA modification GTPase MnmE
gi|166234833|sp|A4TSL0.1|MNME_YERPP RecName: Full=tRNA modification GTPase MnmE
gi|254811500|sp|A9R5S1.1|MNME_YERPG RecName: Full=tRNA modification GTPase MnmE
gi|21961132|gb|AAM87660.1|AE014013_5 GTP-binding protein [Yersinia pestis KIM10+]
gi|45438603|gb|AAS64149.1| GTP-binding protein [Yersinia pestis biovar Microtus str. 91001]
gi|108777768|gb|ABG20287.1| tRNA modification GTPase trmE [Yersinia pestis Nepal516]
gi|108782051|gb|ABG16109.1| tRNA modification GTPase trmE [Yersinia pestis Antiqua]
gi|145212865|gb|ABP42272.1| tRNA modification GTPase trmE [Yersinia pestis Pestoides F]
gi|149290371|gb|EDM40448.1| putative thiophene and furan oxidation protein [Yersinia pestis
CA88-4125]
gi|162354047|gb|ABX87995.1| tRNA modification GTPase TrmE [Yersinia pestis Angola]
gi|165912090|gb|EDR30730.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Orientalis
str. IP275]
gi|165922015|gb|EDR39192.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165991467|gb|EDR43768.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166205597|gb|EDR50077.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166958260|gb|EDR55281.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167048920|gb|EDR60328.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167055503|gb|EDR65296.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|229678778|gb|EEO74883.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia
pestis Nepal516]
gi|229691234|gb|EEO83287.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia
pestis biovar Orientalis str. India 195]
gi|229696176|gb|EEO86223.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia
pestis biovar Orientalis str. PEXU2]
gi|229700210|gb|EEO88246.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia
pestis Pestoides A]
gi|262363792|gb|ACY60513.1| tRNA modification GTPase [Yersinia pestis D106004]
gi|262367728|gb|ACY64285.1| tRNA modification GTPase [Yersinia pestis D182038]
gi|270336876|gb|EFA47653.1| tRNA modification GTPase TrmE [Yersinia pestis KIM D27]
gi|294356086|gb|ADE66427.1| tRNA modification GTPase [Yersinia pestis Z176003]
gi|320017433|gb|ADW01005.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia
pestis biovar Medievalis str. Harbin 35]
gi|342853176|gb|AEL71729.1| tRNA modification GTPase TrmE [Yersinia pestis A1122]
gi|391420283|gb|EIQ83089.1| tRNA modification GTPase TrmE [Yersinia pestis PY-03]
gi|391420336|gb|EIQ83141.1| tRNA modification GTPase TrmE [Yersinia pestis PY-02]
gi|391420354|gb|EIQ83158.1| tRNA modification GTPase TrmE [Yersinia pestis PY-01]
gi|391435299|gb|EIQ96368.1| tRNA modification GTPase TrmE [Yersinia pestis PY-04]
gi|391436688|gb|EIQ97618.1| tRNA modification GTPase TrmE [Yersinia pestis PY-05]
gi|391440039|gb|EIR00643.1| tRNA modification GTPase TrmE [Yersinia pestis PY-06]
gi|391452443|gb|EIR11846.1| tRNA modification GTPase TrmE [Yersinia pestis PY-07]
gi|391452502|gb|EIR11903.1| tRNA modification GTPase TrmE [Yersinia pestis PY-08]
gi|391454148|gb|EIR13386.1| tRNA modification GTPase TrmE [Yersinia pestis PY-09]
gi|391468041|gb|EIR25952.1| tRNA modification GTPase TrmE [Yersinia pestis PY-10]
gi|391468888|gb|EIR26724.1| tRNA modification GTPase TrmE [Yersinia pestis PY-11]
gi|391470309|gb|EIR27988.1| tRNA modification GTPase TrmE [Yersinia pestis PY-12]
gi|391484273|gb|EIR40558.1| tRNA modification GTPase TrmE [Yersinia pestis PY-13]
gi|391485487|gb|EIR41623.1| tRNA modification GTPase TrmE [Yersinia pestis PY-14]
gi|391485654|gb|EIR41771.1| tRNA modification GTPase TrmE [Yersinia pestis PY-15]
gi|391500186|gb|EIR54711.1| tRNA modification GTPase TrmE [Yersinia pestis PY-16]
gi|391500432|gb|EIR54933.1| tRNA modification GTPase TrmE [Yersinia pestis PY-19]
gi|391505219|gb|EIR59250.1| tRNA modification GTPase TrmE [Yersinia pestis PY-25]
gi|391516679|gb|EIR69549.1| tRNA modification GTPase TrmE [Yersinia pestis PY-29]
gi|391517277|gb|EIR70097.1| tRNA modification GTPase TrmE [Yersinia pestis PY-34]
gi|391517771|gb|EIR70540.1| tRNA modification GTPase TrmE [Yersinia pestis PY-32]
gi|391530423|gb|EIR82001.1| tRNA modification GTPase TrmE [Yersinia pestis PY-36]
gi|391533523|gb|EIR84787.1| tRNA modification GTPase TrmE [Yersinia pestis PY-42]
gi|391535670|gb|EIR86726.1| tRNA modification GTPase TrmE [Yersinia pestis PY-45]
gi|391549050|gb|EIR98787.1| tRNA modification GTPase TrmE [Yersinia pestis PY-47]
gi|391549101|gb|EIR98834.1| tRNA modification GTPase TrmE [Yersinia pestis PY-46]
gi|391549517|gb|EIR99215.1| tRNA modification GTPase TrmE [Yersinia pestis PY-48]
gi|391563602|gb|EIS11899.1| tRNA modification GTPase TrmE [Yersinia pestis PY-52]
gi|391565084|gb|EIS13232.1| tRNA modification GTPase TrmE [Yersinia pestis PY-53]
gi|391567888|gb|EIS15695.1| tRNA modification GTPase TrmE [Yersinia pestis PY-54]
gi|391579011|gb|EIS25193.1| tRNA modification GTPase TrmE [Yersinia pestis PY-55]
gi|391580255|gb|EIS26274.1| tRNA modification GTPase TrmE [Yersinia pestis PY-56]
gi|391590776|gb|EIS35448.1| tRNA modification GTPase TrmE [Yersinia pestis PY-58]
gi|391594342|gb|EIS38504.1| tRNA modification GTPase TrmE [Yersinia pestis PY-60]
gi|391594970|gb|EIS39065.1| tRNA modification GTPase TrmE [Yersinia pestis PY-59]
gi|391608922|gb|EIS51368.1| tRNA modification GTPase TrmE [Yersinia pestis PY-61]
gi|391609300|gb|EIS51709.1| tRNA modification GTPase TrmE [Yersinia pestis PY-63]
gi|391610749|gb|EIS52997.1| tRNA modification GTPase TrmE [Yersinia pestis PY-64]
gi|391624308|gb|EIS64965.1| tRNA modification GTPase TrmE [Yersinia pestis PY-66]
gi|391632696|gb|EIS72194.1| tRNA modification GTPase TrmE [Yersinia pestis PY-71]
gi|391634223|gb|EIS73523.1| tRNA modification GTPase TrmE [Yersinia pestis PY-72]
gi|391644648|gb|EIS82620.1| tRNA modification GTPase TrmE [Yersinia pestis PY-76]
gi|391647499|gb|EIS85122.1| tRNA modification GTPase TrmE [Yersinia pestis PY-88]
gi|391651791|gb|EIS88922.1| tRNA modification GTPase TrmE [Yersinia pestis PY-89]
gi|391657660|gb|EIS94149.1| tRNA modification GTPase TrmE [Yersinia pestis PY-90]
gi|391665134|gb|EIT00751.1| tRNA modification GTPase TrmE [Yersinia pestis PY-91]
gi|391674426|gb|EIT09033.1| tRNA modification GTPase TrmE [Yersinia pestis PY-93]
gi|391674665|gb|EIT09253.1| tRNA modification GTPase TrmE [Yersinia pestis PY-94]
gi|391674786|gb|EIT09367.1| tRNA modification GTPase TrmE [Yersinia pestis PY-92]
gi|391688650|gb|EIT21848.1| tRNA modification GTPase TrmE [Yersinia pestis PY-95]
gi|391690468|gb|EIT23493.1| tRNA modification GTPase TrmE [Yersinia pestis PY-96]
gi|391692243|gb|EIT25102.1| tRNA modification GTPase TrmE [Yersinia pestis PY-98]
gi|391705796|gb|EIT37302.1| tRNA modification GTPase TrmE [Yersinia pestis PY-99]
gi|391706487|gb|EIT37916.1| tRNA modification GTPase TrmE [Yersinia pestis PY-100]
gi|391707026|gb|EIT38415.1| tRNA modification GTPase TrmE [Yersinia pestis PY-101]
gi|391721602|gb|EIT51506.1| tRNA modification GTPase TrmE [Yersinia pestis PY-102]
gi|391721718|gb|EIT51614.1| tRNA modification GTPase TrmE [Yersinia pestis PY-103]
gi|391722592|gb|EIT52377.1| tRNA modification GTPase TrmE [Yersinia pestis PY-113]
gi|411172943|gb|EKS42992.1| tRNA modification GTPase TrmE [Yersinia pestis INS]
Length = 454
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 283/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ I+ ATPPGRGGVGI+R+SG+ + V K K PR+A Y F + +
Sbjct: 1 MSTTDTIVAQATPPGRGGVGILRVSGRAASEVAHAVLGKLPK---PRYADYLPFKDVDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ +YF P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 58 TLDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILAL---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS I+ L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSARIHQLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L ++ + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ + N +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAN-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D T+ + + P +P+ V NK D +G +
Sbjct: 287 ERAWNEIEQADRVLFMVDGTTTDATEPAAIWPEFMARLPATLPITVVRNKADITGETLGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N + I LSA GI+LLR+ L + T E +LAR RH+ +L A +L
Sbjct: 347 TKVNGHSLIRLSARTGEGIDLLRDHLKQSMGFTSNTEGG-FLARRRHLQALETAARHL-- 403
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
I+ Q + EL+AE+LR + LS I G+ +++DLL IFS FCIGK
Sbjct: 404 -IQGHEQLVSAYAG--ELLAEELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454
>gi|229520177|ref|ZP_04409604.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae TM
11079-80]
gi|419827708|ref|ZP_14351203.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-1A2]
gi|419834944|ref|ZP_14358394.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-46B1]
gi|421341589|ref|ZP_15792000.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-43B1]
gi|421352772|ref|ZP_15803112.1| tRNA modification GTPase TrmE [Vibrio cholerae HE-45]
gi|422305401|ref|ZP_16392606.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1035(8)]
gi|422915735|ref|ZP_16950100.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-02A1]
gi|423733283|ref|ZP_17706522.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-41B1]
gi|423810643|ref|ZP_17714689.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-55C2]
gi|423844881|ref|ZP_17718427.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-59A1]
gi|423876913|ref|ZP_17722094.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-60A1]
gi|423994668|ref|ZP_17739432.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-02C1]
gi|424007584|ref|ZP_17750546.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-44C1]
gi|424011950|ref|ZP_17754715.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-55B2]
gi|424017962|ref|ZP_17757780.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-59B1]
gi|424589278|ref|ZP_18028742.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1037(10)]
gi|424623343|ref|ZP_18061835.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-50A1]
gi|424627912|ref|ZP_18066239.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-51A1]
gi|424631860|ref|ZP_18069998.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-52A1]
gi|424638774|ref|ZP_18076686.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-56A1]
gi|424647028|ref|ZP_18084722.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-57A1]
gi|443525900|ref|ZP_21092007.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-78A1]
gi|229342771|gb|EEO07762.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae TM
11079-80]
gi|341642096|gb|EGS66583.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-02A1]
gi|395948217|gb|EJH58870.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-43B1]
gi|395956920|gb|EJH67509.1| tRNA modification GTPase TrmE [Vibrio cholerae HE-45]
gi|408017770|gb|EKG55252.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-50A1]
gi|408023485|gb|EKG60647.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-52A1]
gi|408028487|gb|EKG65377.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-56A1]
gi|408037964|gb|EKG74324.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1037(10)]
gi|408038742|gb|EKG75069.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-57A1]
gi|408060076|gb|EKG94791.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-51A1]
gi|408624719|gb|EKK97657.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-1A2]
gi|408629027|gb|EKL01741.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1035(8)]
gi|408632749|gb|EKL05184.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-41B1]
gi|408637473|gb|EKL09521.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-55C2]
gi|408645356|gb|EKL17011.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-60A1]
gi|408646455|gb|EKL18055.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-59A1]
gi|408855746|gb|EKL95442.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-02C1]
gi|408859672|gb|EKL99327.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-46B1]
gi|408863205|gb|EKM02697.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-55B2]
gi|408868334|gb|EKM07670.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-44C1]
gi|408871773|gb|EKM11001.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-59B1]
gi|443455708|gb|ELT19468.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-78A1]
Length = 453
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 192/468 (41%), Positives = 281/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG + + V +T L+PR+A Y F ++ +D+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGPLAAHVAQTVTGRT---LRPRYAEYLPFTDEDGQQLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F PHS+TGEDV+EL GHGGP+++ ML+ L+I G+R A PGEF++RAFLN+K
Sbjct: 63 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIK---GVRPARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FSK I+ L++ LI+LR +E + DFPEE
Sbjct: 120 MDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LADGKVSTDLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + + VEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DAVEKIGIERAWEE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFD---KKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D + TD + P NI + + NK D +G I + N
Sbjct: 292 IRQADRVLFMVDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQP 351
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G++ LR L + + + E ++AR RH+ +L A +L+ I
Sbjct: 352 TLIRLSAKTGQGVDALRQHLKECMGFSGNQEGG-FMARRRHLDALERAAEHLA-----IG 405
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 406 QQQLEGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|397163091|ref|ZP_10486556.1| tRNA modification GTPase TrmE [Enterobacter radicincitans DSM
16656]
gi|396095238|gb|EJI92783.1| tRNA modification GTPase TrmE [Enterobacter radicincitans DSM
16656]
Length = 454
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 191/474 (40%), Positives = 282/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F + +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGVKARDVAQAVLGKLPK---PRYADYLPFQDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + I P +P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPDFIARLPARLPITVVRNKADVTGEPLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ NN + + LSA G+++LR L + ++E +LAR RH+ +L A +L
Sbjct: 347 SDVNNHSLVRLSARTGEGVDVLRQHLKQSMGFDTSMEGG-FLARRRHLQALEAAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|440233153|ref|YP_007346946.1| tRNA modification GTPase trmE [Serratia marcescens FGI94]
gi|440054858|gb|AGB84761.1| tRNA modification GTPase trmE [Serratia marcescens FGI94]
Length = 454
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 192/468 (41%), Positives = 282/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ ATPPGRGGVGI+R+SGK + +++ K K PR+A Y F + +D+G+
Sbjct: 7 IVAQATPPGRGGVGILRISGKKAAEVAQVLLGKLPK---PRYADYLPFRDADGATLDQGI 63
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++RAFLN+K
Sbjct: 64 ALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRVLAL---PGVRIAQPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AA+SAM SL G FS I+ L++ L NLR +E + DFP+E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSAMNSLQGAFSSRIHQLVEALTNLRIYVEAAIDFPDEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L + L ++ + ++ +L+R G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDF-LSDGKIEAQLNAVIGDLDQVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWSE 292
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D T+ + + + P +P+ V NK D +G + I N
Sbjct: 293 IEQADRVLFMVDGTTTGATEPAEIWPEFMARLPDTLPITVVRNKADITGEAQGITEVNGH 352
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
+ I LSA GI +LR+ L + T +E +LAR RH+ +L A +L + +
Sbjct: 353 SLIRLSARTGDGIEVLRDHLKQSMGFTSNMEGG-FLARRRHLQALELAAQHLLQGHEQLV 411
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AE+LR LS I G+ T++DLL IFS FCIGK
Sbjct: 412 SAYAG-----ELLAEELRQAQLALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|424925797|ref|ZP_18349158.1| TrmE [Pseudomonas fluorescens R124]
gi|404306957|gb|EJZ60919.1| TrmE [Pseudomonas fluorescens R124]
Length = 456
Score = 352 bits (903), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 192/479 (40%), Positives = 284/479 (59%), Gaps = 30/479 (6%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKK-TKKQLKPRFATYSSFFCKN 59
M I +AT GRGGVGI+R+SG + + K + ++LKPR+A Y FF +
Sbjct: 1 MSAPRETIAAVATAQGRGGVGIVRISGP----LASVAAKAISGRELKPRYAHYGPFFSDD 56
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFT 119
++D+GL +YF P+S+TGEDV+EL GHGGPI+L MLL CLE+G RLA PGEF+
Sbjct: 57 RQVLDEGLALYFPGPNSFTGEDVLELQGHGGPIVLDMLLKRCLELG----CRLARPGEFS 112
Query: 120 KRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEF 179
+RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G FS+ ++ L ++LI LR +E
Sbjct: 113 ERAFLNDKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVHNLTEQLIGLRIYVEA 172
Query: 180 SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
+ DFPEE + + + + + L K++++L ++++ + AL+R+G+ VV+ G+PN GKSS
Sbjct: 173 AIDFPEEEIDFLADGH-VLSMLDKVREELSTVLREAGQGALLRDGMTVVIAGRPNAGKSS 231
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + ++VEKI
Sbjct: 232 LLNALAGREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTD-------DQVEKI 284
Query: 300 GIERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356
G+ER + +D ++ V DA + D + ++ P V + NK D +G
Sbjct: 285 GVERALKAITEADRVLLVVDATAPEAADPFALWPEFLETRPDPAKVTLIRNKADLTGEAI 344
Query: 357 NINYKNNIANIYLSASKRI---GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEAN 413
+ ++ ++ +S S R G+ LLR L + QT ESS + AR RH+ +L A+
Sbjct: 345 ALEVSDD-GHVTISLSARAAGEGLELLREHLKACMGYEQTSESS-FSARRRHLEALRHAS 402
Query: 414 YYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L +++ EL+AEDLR L I G +++DLL IFS FCIGK
Sbjct: 403 AALEH-----GRAQLTLAGAGELLAEDLRQAQHSLGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|204928462|ref|ZP_03219661.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|452122362|ref|YP_007472610.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
gi|204321895|gb|EDZ07093.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|451911366|gb|AGF83172.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
Length = 454
Score = 352 bits (903), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 282/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F + +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKLPK---PRYADYLPFKDVDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D I P N+P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + + LSA G+++LRN L + +E +LAR RH+ +L EA +L
Sbjct: 347 SEVNGHSLVRLSARTGEGVDVLRNHLKQSMGFETNMEGG-FLARRRHLQALAEAAEHLEQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|16767128|ref|NP_462743.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|374979360|ref|ZP_09720698.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Salmonella enterica
subsp. enterica serovar Typhimurium str. TN061786]
gi|378447205|ref|YP_005234837.1| thiophene and furan oxidation protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|378452751|ref|YP_005240111.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|378986543|ref|YP_005249699.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|378991146|ref|YP_005254310.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|379703105|ref|YP_005244833.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|383498471|ref|YP_005399160.1| thiophene and furan oxidation protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|422028088|ref|ZP_16374407.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm1]
gi|422033135|ref|ZP_16379223.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|427556198|ref|ZP_18929729.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|427573588|ref|ZP_18934321.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm9]
gi|427595085|ref|ZP_18939235.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm3]
gi|427619822|ref|ZP_18944150.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm4]
gi|427643178|ref|ZP_18949005.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|427658107|ref|ZP_18953729.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|427663361|ref|ZP_18958629.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm11]
gi|427679861|ref|ZP_18963524.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
gi|21363010|sp|Q8ZKY3.1|MNME_SALTY RecName: Full=tRNA modification GTPase MnmE
gi|16422417|gb|AAL22702.1| GTPase for tRNA modification and thiophene and furan oxidation
[Salmonella enterica subsp. enterica serovar Typhimurium
str. LT2]
gi|261248984|emb|CBG26841.1| thiophene and furan oxidation protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267996130|gb|ACY91015.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|312914972|dbj|BAJ38946.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|321225561|gb|EFX50616.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Salmonella enterica
subsp. enterica serovar Typhimurium str. TN061786]
gi|323132204|gb|ADX19634.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|332990693|gb|AEF09676.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|380465292|gb|AFD60695.1| thiophene and furan oxidation protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|414012629|gb|EKS96542.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm1]
gi|414013774|gb|EKS97647.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|414014163|gb|EKS98015.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|414027635|gb|EKT10852.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm9]
gi|414028571|gb|EKT11750.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm3]
gi|414030991|gb|EKT14070.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm4]
gi|414042015|gb|EKT24566.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|414042796|gb|EKT25326.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|414047148|gb|EKT29443.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm11]
gi|414055811|gb|EKT37678.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
Length = 454
Score = 352 bits (902), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 282/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F + +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKLPK---PRYADYLPFKDVDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D I P N+P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + + LSA GI++LRN L + +E +LAR RH+ +L EA +L
Sbjct: 347 SEVNGHSLVRLSARTGEGIDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALAEAAEHLEQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|238793137|ref|ZP_04636765.1| tRNA modification GTPase mnmE [Yersinia intermedia ATCC 29909]
gi|238727510|gb|EEQ19036.1| tRNA modification GTPase mnmE [Yersinia intermedia ATCC 29909]
Length = 454
Score = 352 bits (902), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 191/474 (40%), Positives = 283/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ I+ ATPPGRGGVGI+R+SG+ + + V K K PR+A Y F + +
Sbjct: 1 MSTTDTIVAQATPPGRGGVGILRVSGRAAAEVAQAVLGKLPK---PRYADYLPFKDTDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ +YF P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 58 TLDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILAL---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS I+ L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSVKIHQLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L ++ + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D T+ + + P +P+ V NK D +G +
Sbjct: 287 ERAWNEIEQADRVLFMVDGTTTDATEPAAIWPEFMARLPSTLPITVVRNKADVTGESLGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N + I LSA GI+LLR+ L + T E +LAR RH+ +L A +L
Sbjct: 347 TEVNGHSLIRLSARTGEGIDLLRSHLKQSMGFTSNTEGG-FLARRRHLQALETAAQHLVQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + + EL+AE+LR + LS I G+ +++DLL IFS FCIGK
Sbjct: 406 GHEQLVSAYAG-----ELLAEELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454
>gi|15640035|ref|NP_062587.1| tRNA modification GTPase TrmE [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|153827657|ref|ZP_01980324.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae MZO-2]
gi|227080240|ref|YP_002808791.1| tRNA modification GTPase TrmE [Vibrio cholerae M66-2]
gi|254851569|ref|ZP_05240919.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae MO10]
gi|298501189|ref|ZP_07010988.1| tRNA modification GTPase TrmE [Vibrio cholerae MAK 757]
gi|9654394|gb|AAF93181.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|149737870|gb|EDM52775.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae MZO-2]
gi|227008128|gb|ACP04340.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae M66-2]
gi|254847274|gb|EET25688.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae MO10]
gi|297540061|gb|EFH76123.1| tRNA modification GTPase TrmE [Vibrio cholerae MAK 757]
Length = 464
Score = 352 bits (902), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 192/468 (41%), Positives = 281/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG + + V +T L+PR+A Y F ++ +D+G+
Sbjct: 17 IVAQATAPGRGGVGIIRVSGPLAAHVAQTVTGRT---LRPRYAEYLPFTDEDGQQLDQGI 73
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F PHS+TGEDV+EL GHGGP+++ ML+ L+I G+R A PGEF++RAFLN+K
Sbjct: 74 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIK---GVRPARPGEFSERAFLNDK 130
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FSK I+ L++ LI+LR +E + DFPEE
Sbjct: 131 MDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE 190
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 191 IDF-LADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 249
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + + VEKIGIER W E
Sbjct: 250 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DAVEKIGIERAWEE 302
Query: 308 LKNSDIIIYVQDARYDKHTDFD---KKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D + TD + P NI + + NK D +G I + N
Sbjct: 303 IRQADRVLFMVDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQP 362
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G++ LR L + + + E ++AR RH+ +L A +L+ I
Sbjct: 363 TLIRLSAKTGQGVDALRQHLKECMGFSGNQEGG-FMARRRHLDALERAAEHLA-----IG 416
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 417 QQQLEGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 464
>gi|410634847|ref|ZP_11345474.1| tRNA modification GTPase mnmE [Glaciecola lipolytica E3]
gi|410145591|dbj|GAC12679.1| tRNA modification GTPase mnmE [Glaciecola lipolytica E3]
Length = 455
Score = 352 bits (902), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 192/475 (40%), Positives = 290/475 (61%), Gaps = 23/475 (4%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M ++ I+ AT PGRGGVGI+R+SG ++ V +T L PR A Y F ++
Sbjct: 1 MQAQHDTIVAQATAPGRGGVGIVRVSGPLAKTVATEVLGRT---LTPRKAEYMPFMDEHQ 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
I+D+G+ ++F+ PHS+TGEDV+EL GHGG IIL +L+ L I K +R+A PGEF++
Sbjct: 58 QILDQGIALFFQNPHSFTGEDVLELQGHGGQIILDLLIKRILLIPK---IRMARPGEFSE 114
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI+AS+ AAKSAM SL G+FS LIN L++++I+LR +E +
Sbjct: 115 RAFLNDKLDLAQAEAIADLIDASSIQAAKSAMRSLQGEFSTLINQLVERVIHLRMYVEAA 174
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFP+E + L +L +I +++ K+ QQ K+ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 IDFPDEEIDF-LTDGKVAKDLTEIIEQIQKVRQQAKQGSLLREGMQVVIAGKPNAGKSSL 233
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G D AIVT IAGTTRD + + I ++ I DTAG ++++ + VEKIG
Sbjct: 234 LNALAGRDAAIVTEIAGTTRDVLKEHIHLDGMPLHIIDTAG-------LRESSDRVEKIG 286
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
IER W E++ +D ++++ D+ D K + ++ P N+ + V NK+D SG
Sbjct: 287 IERAWQEIQKADRVLFMLDSCDSTENDPYKIWPEFMQKLPKNMGLTLVRNKVDLSGESIG 346
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
LSAS G++ L L + + Q E ++AR RHI ++ A+ +L
Sbjct: 347 FEQHGTTPVFRLSASLNKGVDALAEHLKECMGFEQNAEGQ-FIARRRHIDAIERASEHLE 405
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ ++++ E++AE+LR + L+ + G+ +++DLL IFS FCIGK
Sbjct: 406 IGHQQLHENMAG-----EILAEELRLTQQALNEVTGEFSSDDLLGRIFSSFCIGK 455
>gi|386022937|ref|YP_005940962.1| tRNA modification GTPase TrmE [Pseudomonas stutzeri DSM 4166]
gi|327482910|gb|AEA86220.1| tRNA modification GTPase TrmE [Pseudomonas stutzeri DSM 4166]
Length = 455
Score = 352 bits (902), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 190/476 (39%), Positives = 281/476 (59%), Gaps = 25/476 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M+ I +AT PGRGGVGIIR+SG +I + + ++ PR A Y F +
Sbjct: 1 MIPARDTIAAVATAPGRGGVGIIRVSGPRARAIAITL---SGREPTPRHAHYGPFHADDG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+ID+GL+++F PHS+TGEDV+ELHGHGGP++L MLL C+E+G +RLA PGEF++
Sbjct: 58 EVIDEGLLLFFPGPHSFTGEDVLELHGHGGPVVLDMLLQRCVELG----VRLARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G+FS+ ++ L ++LI LR +E +
Sbjct: 114 RAFLNDKLDLAQAEAIADLIEASSAQAARNAVRSLQGEFSRRVHQLTERLIQLRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + + + + +L ++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDFLADGH-VLAQLDGVRTELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D ++VE+IG
Sbjct: 233 LNALAGREAAIVTDIAGTTRDVLREHILIDGMPLHVVDTAGLRDTE-------DQVERIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
++R + +D I+ V DA + +D + + P V + NK D +G
Sbjct: 286 VQRALSAIGEADRILLVVDASAPEASDPSALWPEFLDFSPEPGKVTLIRNKADLTGEAIV 345
Query: 358 INYKNN-IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYL 416
+ N+ A + L A G+ LLR L + QT ESS + AR RH+ +L A+ +L
Sbjct: 346 LRCDNDGQATLSLCARSGEGLELLREHLKHCMGYEQTAESS-FSARRRHLDALRLADEHL 404
Query: 417 SCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 405 RH-----GHDQLTLAGAGELLAEDLRLAQQALGEITGAFSSDDLLGRIFSSFCIGK 455
>gi|168464825|ref|ZP_02698717.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|418760211|ref|ZP_13316370.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|418766337|ref|ZP_13322415.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|418771101|ref|ZP_13327115.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|418777084|ref|ZP_13333019.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|418782066|ref|ZP_13337934.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|418782760|ref|ZP_13338619.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|418804143|ref|ZP_13359753.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
gi|419788094|ref|ZP_14313792.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|195632244|gb|EDX50728.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|392618313|gb|EIX00715.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|392735117|gb|EIZ92297.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|392738389|gb|EIZ95534.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|392743374|gb|EJA00447.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|392744645|gb|EJA01690.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|392744965|gb|EJA02006.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|392759215|gb|EJA16070.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|392771790|gb|EJA28503.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
Length = 454
Score = 352 bits (902), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 282/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F + +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKLPK---PRYADYLPFKDVDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D I P N+P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + + LSA G+++LRN L + +E +LAR RH+ +L EA +L
Sbjct: 347 SEVNGHSLVRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALAEAAEHLEQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKTQLLGAWAG-----ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|398976395|ref|ZP_10686301.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM25]
gi|398139231|gb|EJM28232.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM25]
Length = 456
Score = 352 bits (902), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 195/478 (40%), Positives = 284/478 (59%), Gaps = 28/478 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKK-TKKQLKPRFATYSSFFCKN 59
M I +AT GRGGVGI+R+SG + + K + ++LKPRFA Y FF +
Sbjct: 1 MSAPRETIAAVATAQGRGGVGIVRISGP----LASVAAKAISGRELKPRFAHYGPFFSDD 56
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFT 119
++D+GL +YF P+S+TGEDV+EL GHGGPI+L MLL CLE+G RLA PGEF+
Sbjct: 57 QQVLDEGLALYFPGPNSFTGEDVLELQGHGGPIVLDMLLKRCLELG----CRLARPGEFS 112
Query: 120 KRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEF 179
+RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G FS+ ++ L ++LI LR +E
Sbjct: 113 ERAFLNDKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVHNLTEQLIGLRIYVEA 172
Query: 180 SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
+ DFPEE + + + + + L K++ +L ++++ + AL+R+G+ VV+ G+PN GKSS
Sbjct: 173 AIDFPEEEIDFLADGH-VLSMLDKVRNELSTVLREAGQGALLRDGMTVVIAGRPNAGKSS 231
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + + VEKI
Sbjct: 232 LLNALAGREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTD-------DHVEKI 284
Query: 300 GIERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356
G+ER + +D ++ V DA + D + ++ P V + NK D +G
Sbjct: 285 GVERALKAIGEADRVLLVVDATAPEAADPFALWPEFLETRPDPAKVTLIRNKADLTGEAI 344
Query: 357 NINYKNN-IANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ ++ I LSA S G++LLR+ L + QT ESS + AR RH+ +L A+
Sbjct: 345 ALEVSDDGHVTISLSAKSAGEGLDLLRDHLKACMGYEQTSESS-FSARRRHLEALRHASG 403
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L +++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 404 ALEH-----GRAQLTLAGAGELLAEDLRQAQQSLGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|218708090|ref|YP_002415711.1| tRNA modification GTPase TrmE [Vibrio splendidus LGP32]
gi|218321109|emb|CAV17059.1| tRNA modification GTPase trmE [Vibrio splendidus LGP32]
Length = 467
Score = 352 bits (902), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 199/469 (42%), Positives = 281/469 (59%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG ++ + T K LKPR+A Y F + +D+G+
Sbjct: 20 IVAQATAPGRGGVGIIRVSGP---LATQVALEVTGKTLKPRYAEYLPFKSHDGIELDQGI 76
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F PHS+TGEDV+EL GHGGP+++ ML+ L I G+R A PGEF++RAFLN+K
Sbjct: 77 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILAIS---GVRAARPGEFSERAFLNDK 133
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FSK IN L+D LI LR +E + DFPEE
Sbjct: 134 MDLTQAEAIADLIDASSEEAAKSALQSLQGEFSKRINTLVDSLIYLRIYVEAAIDFPEEE 193
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + Q+ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 194 IDF-LADGKVSADLQAIIDNLEAVRQEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 252
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG +++ +EVEKIGIER W E
Sbjct: 253 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVEKIGIERAWEE 305
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQKNINYKNN 363
+ +D ++++ D TD K I +F P NI + + NK D + + I + N+
Sbjct: 306 IAQADRVLFMVDGTTTDATD-PKDIWPDFVDRLPDNIGMTVIRNKADQTSEELGICHVND 364
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA G++ LR+ L D + E ++AR RH+ +L A+ +L I
Sbjct: 365 PTLIRLSAKTGQGVDALRSHLKDCMGFAGGHEGG-FMARRRHLDALERASEHLD-----I 418
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 419 GQQQLEGYMAGEILAEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 467
>gi|420754239|ref|ZP_15229651.1| tRNA modification GTPase TrmE [Yersinia pestis PY-65]
gi|391622369|gb|EIS63301.1| tRNA modification GTPase TrmE [Yersinia pestis PY-65]
Length = 454
Score = 352 bits (902), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 283/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ I+ ATPPGRGGVGI+R+SG+ + V K K PR+A Y F + +
Sbjct: 1 MSTTDTIVAQATPPGRGGVGILRVSGRAASEVAHAVLGKLPK---PRYADYLPFKDVDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ +YF P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 58 TLDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILAL---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS I+ L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSARIHQLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L ++ + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ + N +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAN-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D T+ + + P +P+ V NK D +G +
Sbjct: 287 ERAWNEIEQADRVLFMVDGTPTDATEPAAIWPEFMARLPATLPITVVRNKADITGETLGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N + I LSA GI+LLR+ L + T E +LAR RH+ +L A +L
Sbjct: 347 TKVNGHSLIRLSARTGEGIDLLRDHLKQSMGFTSNTEGG-FLARRRHLQALETAARHL-- 403
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
I+ Q + EL+AE+LR + LS I G+ +++DLL IFS FCIGK
Sbjct: 404 -IQGHEQLVSAYAG--ELLAEELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454
>gi|153821980|ref|ZP_01974647.1| tRNA modification GTPase TrmE [Vibrio cholerae B33]
gi|229508290|ref|ZP_04397794.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae BX
330286]
gi|229508871|ref|ZP_04398362.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae B33]
gi|229517142|ref|ZP_04406588.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae RC9]
gi|229606564|ref|YP_002877212.1| tRNA modification GTPase TrmE [Vibrio cholerae MJ-1236]
gi|255746813|ref|ZP_05420759.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholera CIRS
101]
gi|262155893|ref|ZP_06029015.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae
INDRE 91/1]
gi|360036772|ref|YP_004938535.1| tRNA modification GTPase TrmE [Vibrio cholerae O1 str. 2010EL-1786]
gi|379739910|ref|YP_005331879.1| tRNA modification GTPase TrmE [Vibrio cholerae IEC224]
gi|417811086|ref|ZP_12457754.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-49A2]
gi|417814838|ref|ZP_12461482.1| tRNA modification GTPase TrmE [Vibrio cholerae HCUF01]
gi|418330715|ref|ZP_12941682.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-06A1]
gi|418339178|ref|ZP_12948070.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-23A1]
gi|418342248|ref|ZP_12949069.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-28A1]
gi|418347429|ref|ZP_12952171.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-43A1]
gi|418356609|ref|ZP_12959325.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-61A1]
gi|419824479|ref|ZP_14347992.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1033(6)]
gi|421315283|ref|ZP_15765859.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1032(5)]
gi|421318806|ref|ZP_15769370.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1038(11)]
gi|421322859|ref|ZP_15773394.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1041(14)]
gi|421326311|ref|ZP_15776832.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1042(15)]
gi|421330236|ref|ZP_15780724.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1046(19)]
gi|421333928|ref|ZP_15784402.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1048(21)]
gi|421337744|ref|ZP_15788188.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-20A2]
gi|421345310|ref|ZP_15795700.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-46A1]
gi|421348885|ref|ZP_15799256.1| tRNA modification GTPase TrmE [Vibrio cholerae HE-25]
gi|422890030|ref|ZP_16932489.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-40A1]
gi|422900602|ref|ZP_16936238.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-48A1]
gi|422905000|ref|ZP_16939886.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-70A1]
gi|422911748|ref|ZP_16946297.1| tRNA modification GTPase TrmE [Vibrio cholerae HFU-02]
gi|422921249|ref|ZP_16954498.1| tRNA modification GTPase TrmE [Vibrio cholerae BJG-01]
gi|422924214|ref|ZP_16957283.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-38A1]
gi|423143280|ref|ZP_17130914.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-19A1]
gi|423148260|ref|ZP_17135637.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-21A1]
gi|423152049|ref|ZP_17139279.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-22A1]
gi|423154840|ref|ZP_17141991.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-32A1]
gi|423158704|ref|ZP_17145690.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-33A2]
gi|423163367|ref|ZP_17150182.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-48B2]
gi|423729370|ref|ZP_17702720.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-17A1]
gi|423775180|ref|ZP_17713876.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-50A2]
gi|423887675|ref|ZP_17724937.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-62A1]
gi|423920145|ref|ZP_17729550.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-77A1]
gi|424000550|ref|ZP_17743659.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-17A2]
gi|424007526|ref|ZP_17750490.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-37A1]
gi|424022513|ref|ZP_17762195.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-62B1]
gi|424025532|ref|ZP_17765168.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-69A1]
gi|424584904|ref|ZP_18024515.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1030(3)]
gi|424593530|ref|ZP_18032888.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1040(13)]
gi|424597459|ref|ZP_18036675.1| tRNA modification GTPase TrmE [Vibrio Cholerae CP1044(17)]
gi|424600236|ref|ZP_18039409.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1047(20)]
gi|424605135|ref|ZP_18044121.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1050(23)]
gi|424608861|ref|ZP_18047738.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-39A1]
gi|424611766|ref|ZP_18050593.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-41A1]
gi|424615657|ref|ZP_18054367.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-42A1]
gi|424620403|ref|ZP_18058950.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-47A1]
gi|424643224|ref|ZP_18080999.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-56A2]
gi|424651155|ref|ZP_18088696.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-57A2]
gi|424655108|ref|ZP_18092425.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-81A2]
gi|440712071|ref|ZP_20892697.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae 4260B]
gi|443502061|ref|ZP_21069070.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-64A1]
gi|443505960|ref|ZP_21072776.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-65A1]
gi|443509798|ref|ZP_21076489.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-67A1]
gi|443513638|ref|ZP_21080200.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-68A1]
gi|443517446|ref|ZP_21083889.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-71A1]
gi|443522032|ref|ZP_21088299.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-72A2]
gi|443528966|ref|ZP_21094989.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-7A1]
gi|443536491|ref|ZP_21102353.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-80A1]
gi|443536529|ref|ZP_21102389.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-81A1]
gi|449054679|ref|ZP_21733347.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae O1
str. Inaba G4222]
gi|31340537|sp|Q9KVY5.2|MNME_VIBCH RecName: Full=tRNA modification GTPase MnmE
gi|126520519|gb|EAZ77742.1| tRNA modification GTPase TrmE [Vibrio cholerae B33]
gi|229346205|gb|EEO11177.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae RC9]
gi|229354146|gb|EEO19078.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae B33]
gi|229354563|gb|EEO19485.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae BX
330286]
gi|229369219|gb|ACQ59642.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae
MJ-1236]
gi|255735570|gb|EET90969.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholera CIRS
101]
gi|262030345|gb|EEY48987.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae
INDRE 91/1]
gi|340046010|gb|EGR06945.1| tRNA modification GTPase TrmE [Vibrio cholerae HCUF01]
gi|340046196|gb|EGR07127.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-49A2]
gi|341627208|gb|EGS52532.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-70A1]
gi|341628612|gb|EGS53837.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-48A1]
gi|341628898|gb|EGS54086.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-40A1]
gi|341642171|gb|EGS66656.1| tRNA modification GTPase TrmE [Vibrio cholerae HFU-02]
gi|341649403|gb|EGS73380.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-38A1]
gi|341649438|gb|EGS73414.1| tRNA modification GTPase TrmE [Vibrio cholerae BJG-01]
gi|356423349|gb|EHH76801.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-06A1]
gi|356424005|gb|EHH77427.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-21A1]
gi|356428046|gb|EHH81276.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-19A1]
gi|356428731|gb|EHH81952.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-23A1]
gi|356436198|gb|EHH89318.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-22A1]
gi|356439147|gb|EHH92136.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-28A1]
gi|356446869|gb|EHH99660.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-32A1]
gi|356448861|gb|EHI01622.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-43A1]
gi|356450781|gb|EHI03491.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-61A1]
gi|356451431|gb|EHI04116.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-33A2]
gi|356456881|gb|EHI09458.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-48B2]
gi|356647926|gb|AET27981.1| tRNA modification GTPase TrmE [Vibrio cholerae O1 str. 2010EL-1786]
gi|378793420|gb|AFC56891.1| tRNA modification GTPase TrmE [Vibrio cholerae IEC224]
gi|395924247|gb|EJH35053.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1032(5)]
gi|395925443|gb|EJH36241.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1041(14)]
gi|395926559|gb|EJH37337.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1038(11)]
gi|395936035|gb|EJH46765.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1042(15)]
gi|395936411|gb|EJH47135.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1046(19)]
gi|395938291|gb|EJH48985.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1048(21)]
gi|395948282|gb|EJH58933.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-20A2]
gi|395948920|gb|EJH59555.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-46A1]
gi|395957078|gb|EJH67663.1| tRNA modification GTPase TrmE [Vibrio cholerae HE-25]
gi|395965472|gb|EJH75641.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-56A2]
gi|395965621|gb|EJH75784.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-57A2]
gi|395967928|gb|EJH77952.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-42A1]
gi|395977675|gb|EJH87079.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-47A1]
gi|395979786|gb|EJH89111.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1030(3)]
gi|395980190|gb|EJH89479.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1047(20)]
gi|408011487|gb|EKG49297.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-39A1]
gi|408018667|gb|EKG56100.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-41A1]
gi|408038989|gb|EKG75298.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1040(13)]
gi|408046103|gb|EKG81819.1| tRNA modification GTPase TrmE [Vibrio Cholerae CP1044(17)]
gi|408047874|gb|EKG83371.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1050(23)]
gi|408058357|gb|EKG93160.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-81A2]
gi|408613009|gb|EKK86340.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1033(6)]
gi|408629180|gb|EKL01889.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-17A1]
gi|408632242|gb|EKL04711.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-50A2]
gi|408661051|gb|EKL32045.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-77A1]
gi|408661807|gb|EKL32786.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-62A1]
gi|408843790|gb|EKL83940.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-37A1]
gi|408850917|gb|EKL90858.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-17A2]
gi|408876556|gb|EKM15669.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-62B1]
gi|408882520|gb|EKM21335.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-69A1]
gi|439972316|gb|ELP48611.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae 4260B]
gi|443433544|gb|ELS76045.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-64A1]
gi|443437373|gb|ELS83464.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-65A1]
gi|443441213|gb|ELS90875.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-67A1]
gi|443445029|gb|ELS98280.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-68A1]
gi|443448863|gb|ELT05472.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-71A1]
gi|443451925|gb|ELT12162.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-72A2]
gi|443460229|gb|ELT27617.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-7A1]
gi|443460346|gb|ELT31435.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-80A1]
gi|443467776|gb|ELT42430.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-81A1]
gi|448265825|gb|EMB03058.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae O1
str. Inaba G4222]
Length = 453
Score = 352 bits (902), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 192/468 (41%), Positives = 281/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG + + V +T L+PR+A Y F ++ +D+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGPLAAHVAQTVTGRT---LRPRYAEYLPFTDEDGQQLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F PHS+TGEDV+EL GHGGP+++ ML+ L+I G+R A PGEF++RAFLN+K
Sbjct: 63 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIK---GVRPARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FSK I+ L++ LI+LR +E + DFPEE
Sbjct: 120 MDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + + VEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DAVEKIGIERAWEE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFD---KKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D + TD + P NI + + NK D +G I + N
Sbjct: 292 IRQADRVLFMVDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQP 351
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G++ LR L + + + E ++AR RH+ +L A +L+ I
Sbjct: 352 TLIRLSAKTGQGVDALRQHLKECMGFSGNQEGG-FMARRRHLDALERAAEHLA-----IG 405
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 406 QQQLEGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|437816917|ref|ZP_20842699.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
gi|435308297|gb|ELO83275.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
Length = 454
Score = 352 bits (902), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 282/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F + +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKLPK---PRYADYLPFKDVDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D I P N+P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGEPLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + + LSA G+++LRN L + +E +LAR RH+ +L EA +L
Sbjct: 347 SEVNGHSLVRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALAEAAEHLEQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|62182330|ref|YP_218747.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|168234430|ref|ZP_02659488.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|168235485|ref|ZP_02660543.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|168260372|ref|ZP_02682345.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|194444972|ref|YP_002043092.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194473009|ref|ZP_03078993.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194736496|ref|YP_002116786.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197262577|ref|ZP_03162651.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|207859069|ref|YP_002245720.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|375116675|ref|ZP_09761845.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
gi|375121311|ref|ZP_09766478.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Dublin str. SD3246]
gi|378957313|ref|YP_005214800.1| thiophene and furan oxidation protein [Salmonella enterica subsp.
enterica serovar Gallinarum/pullorum str. RKS5078]
gi|416421127|ref|ZP_11689312.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|416432495|ref|ZP_11696220.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|416437687|ref|ZP_11698973.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|416443020|ref|ZP_11702730.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|416450218|ref|ZP_11707351.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|416461180|ref|ZP_11715228.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|416463957|ref|ZP_11716151.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|416488822|ref|ZP_11725931.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|416496395|ref|ZP_11729117.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|416508475|ref|ZP_11736111.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|416517466|ref|ZP_11739497.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. ATCC BAA710]
gi|416531246|ref|ZP_11745531.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|416540246|ref|ZP_11750368.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|416540592|ref|ZP_11750448.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|416548711|ref|ZP_11755001.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
gi|416556820|ref|ZP_11759144.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|416567529|ref|ZP_11764301.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
gi|416581079|ref|ZP_11772340.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|416585006|ref|ZP_11774594.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|416591830|ref|ZP_11778744.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|416602730|ref|ZP_11785395.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|416603606|ref|ZP_11785541.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|416610760|ref|ZP_11790304.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|416624900|ref|ZP_11798354.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|416626852|ref|ZP_11798859.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|416636917|ref|ZP_11803278.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|416649756|ref|ZP_11810083.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|416658368|ref|ZP_11814265.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|416664803|ref|ZP_11816347.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|416682269|ref|ZP_11823988.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|416698037|ref|ZP_11828321.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|416703458|ref|ZP_11829585.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|416711823|ref|ZP_11835568.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|416716052|ref|ZP_11838563.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|416726994|ref|ZP_11847023.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|416730522|ref|ZP_11848677.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|416739882|ref|ZP_11854049.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|416744317|ref|ZP_11856584.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|416755064|ref|ZP_11861797.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|416760531|ref|ZP_11864856.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|416769810|ref|ZP_11871248.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|418483082|ref|ZP_13052093.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|418490238|ref|ZP_13056787.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|418497008|ref|ZP_13063432.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|418501823|ref|ZP_13068201.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|418503455|ref|ZP_13069818.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|418506290|ref|ZP_13072624.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|418526538|ref|ZP_13092513.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
gi|418807032|ref|ZP_13362600.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|418811193|ref|ZP_13366729.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|418814396|ref|ZP_13369912.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|418819370|ref|ZP_13374822.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|418825427|ref|ZP_13380721.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22462]
gi|418829273|ref|ZP_13384257.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|418834925|ref|ZP_13389826.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|418839173|ref|ZP_13394012.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|418845804|ref|ZP_13400582.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|418849536|ref|ZP_13404267.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|418854080|ref|ZP_13408762.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
gi|418860070|ref|ZP_13414656.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|418865204|ref|ZP_13419685.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
gi|418868086|ref|ZP_13422530.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
gi|419729978|ref|ZP_14256932.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|419734363|ref|ZP_14261255.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|419737905|ref|ZP_14264674.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|419744043|ref|ZP_14270703.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|419749778|ref|ZP_14276254.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|421450014|ref|ZP_15899393.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
gi|421569802|ref|ZP_16015502.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|421576319|ref|ZP_16021921.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|421581702|ref|ZP_16027244.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|421582333|ref|ZP_16027871.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
gi|436783470|ref|ZP_20521259.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE30663]
gi|436799987|ref|ZP_20524191.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|437329306|ref|ZP_20741263.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|437336244|ref|ZP_20742965.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|438128077|ref|ZP_20872992.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
gi|440762639|ref|ZP_20941693.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
gi|440768381|ref|ZP_20947352.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
gi|440775235|ref|ZP_20954119.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
gi|445142730|ref|ZP_21386221.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Dublin str. SL1438]
gi|445153234|ref|ZP_21391306.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Dublin str. HWS51]
gi|445246944|ref|ZP_21408382.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 436]
gi|445329756|ref|ZP_21413613.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|75479674|sp|Q57HZ6.1|MNME_SALCH RecName: Full=tRNA modification GTPase MnmE
gi|205422295|sp|A9MX84.2|MNME_SALPB RecName: Full=tRNA modification GTPase MnmE
gi|254811491|sp|B5QUQ5.1|MNME_SALEP RecName: Full=tRNA modification GTPase MnmE
gi|254811493|sp|B4SYB2.1|MNME_SALNS RecName: Full=tRNA modification GTPase MnmE
gi|254811496|sp|B4TN11.1|MNME_SALSV RecName: Full=tRNA modification GTPase MnmE
gi|62129963|gb|AAX67666.1| GTPase for tRNA modification and thiophene and furan oxidation
[Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|194403635|gb|ACF63857.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194459373|gb|EDX48212.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194711998|gb|ACF91219.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197240832|gb|EDY23452.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197291436|gb|EDY30788.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|205331633|gb|EDZ18397.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|205350463|gb|EDZ37094.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|206710872|emb|CAR35236.1| thiophene and furan oxidation protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|322617245|gb|EFY14150.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322619067|gb|EFY15953.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322625134|gb|EFY21962.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322630185|gb|EFY26956.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322634389|gb|EFY31123.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322635274|gb|EFY31989.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322642902|gb|EFY39486.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322650576|gb|EFY46983.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322656398|gb|EFY52690.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322661578|gb|EFY57801.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322661659|gb|EFY57878.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322668227|gb|EFY64385.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322672843|gb|EFY68951.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322674975|gb|EFY71061.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322683665|gb|EFY79678.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322687741|gb|EFY83710.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|322716821|gb|EFZ08392.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
gi|323192044|gb|EFZ77279.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323200526|gb|EFZ85604.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323204951|gb|EFZ89936.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323211767|gb|EFZ96600.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323218629|gb|EGA03336.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323220030|gb|EGA04500.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323224800|gb|EGA09065.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323232491|gb|EGA16593.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323235266|gb|EGA19351.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323241054|gb|EGA25091.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323241396|gb|EGA25428.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323248627|gb|EGA32557.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323252074|gb|EGA35934.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323258622|gb|EGA42285.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323262347|gb|EGA45905.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323268183|gb|EGA51659.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323270597|gb|EGA54042.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|326625578|gb|EGE31923.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Dublin str. SD3246]
gi|357207924|gb|AET55970.1| thiophene and furan oxidation protein [Salmonella enterica subsp.
enterica serovar Gallinarum/pullorum str. RKS5078]
gi|363549490|gb|EHL33830.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|363552298|gb|EHL36591.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|363559288|gb|EHL43456.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|363560625|gb|EHL44767.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. ATCC BAA710]
gi|363570833|gb|EHL54755.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
gi|363578671|gb|EHL62474.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
gi|363579184|gb|EHL62976.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|366055135|gb|EHN19472.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|366062065|gb|EHN26304.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|366065550|gb|EHN29739.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|366066519|gb|EHN30684.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|366072855|gb|EHN36937.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|366083427|gb|EHN47349.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|366828640|gb|EHN55522.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|372205500|gb|EHP19009.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
gi|381295449|gb|EIC36562.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|381297835|gb|EIC38920.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|381303780|gb|EIC44798.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|381309431|gb|EIC50265.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|381310532|gb|EIC51360.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|392780105|gb|EJA36762.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|392781131|gb|EJA37776.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|392794450|gb|EJA50865.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|392795001|gb|EJA51386.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|392804531|gb|EJA60689.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|392804650|gb|EJA60799.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|392812068|gb|EJA68064.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|392813257|gb|EJA69226.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|392814935|gb|EJA70880.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22462]
gi|392821138|gb|EJA76969.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|392825363|gb|EJA81110.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
gi|392827980|gb|EJA83678.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|392828853|gb|EJA84542.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
gi|392838543|gb|EJA94105.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
gi|396067977|gb|EJI76326.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
gi|402516312|gb|EJW23724.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|402518974|gb|EJW26340.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|402526526|gb|EJW33800.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|402533151|gb|EJW40334.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
gi|434942236|gb|ELL48569.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
gi|434959036|gb|ELL52547.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE30663]
gi|434959353|gb|ELL52827.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|435190408|gb|ELN74995.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|435197674|gb|ELN81951.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|436411402|gb|ELP09354.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
gi|436417644|gb|ELP15535.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
gi|436422752|gb|ELP20580.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
gi|444849216|gb|ELX74331.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Dublin str. SL1438]
gi|444852889|gb|ELX77963.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Dublin str. HWS51]
gi|444878501|gb|ELY02616.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|444890233|gb|ELY13588.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 436]
Length = 454
Score = 352 bits (902), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 282/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F + +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKLPK---PRYADYLPFKDVDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D I P N+P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + + LSA G+++LRN L + +E +LAR RH+ +L EA +L
Sbjct: 347 SEVNGHSLVRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALAEAAEHLEQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|59710609|ref|YP_203385.1| tRNA modification GTPase TrmE [Vibrio fischeri ES114]
gi|197334085|ref|YP_002154774.1| tRNA modification GTPase TrmE [Vibrio fischeri MJ11]
gi|423684739|ref|ZP_17659547.1| tRNA modification GTPase TrmE [Vibrio fischeri SR5]
gi|81311054|sp|Q5E8Z9.1|MNME_VIBF1 RecName: Full=tRNA modification GTPase MnmE
gi|59478710|gb|AAW84497.1| tRNA modification GTPase TrmE [Vibrio fischeri ES114]
gi|197315575|gb|ACH65022.1| tRNA modification GTPase TrmE [Vibrio fischeri MJ11]
gi|371495786|gb|EHN71380.1| tRNA modification GTPase TrmE [Vibrio fischeri SR5]
Length = 455
Score = 351 bits (901), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 197/475 (41%), Positives = 281/475 (59%), Gaps = 23/475 (4%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M I+ AT PGRGGVGIIR+SG + V K +LKPR+A Y+ F +N
Sbjct: 1 MTLHTDTIVAQATAPGRGGVGIIRVSGPKAKDVALAVIGK---ELKPRYAEYAPFKDENG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+D+G+ +YF PHS+TGEDV+EL GHGGP+++ ML+ L+I G+R A PGEF++
Sbjct: 58 LELDQGIALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILKID---GIRTARPGEFSE 114
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+K+DL Q EAI DLI+AS+E AAKSA+ SL G FS IN L++ LI LR +E +
Sbjct: 115 RAFLNDKMDLAQAEAIADLIDASSEEAAKSALNSLQGVFSNKINTLVESLIYLRIYVEAA 174
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + L +L I L + ++ + A++R G+ VV+ G+PN GKSSL
Sbjct: 175 IDFPEEEIDF-LADGKVSGDLQGIIDNLNAVRKEANQGAIMREGMKVVIAGRPNAGKSSL 233
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G D AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IG
Sbjct: 234 LNALSGKDTAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIG 286
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFD---KKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
IER W E+ +D ++++ D TD + + P N+ + + NK D +G
Sbjct: 287 IERAWDEIAQADRVLFMVDGTTTDATDPKLIWPEFLDRLPKNMGMTVIRNKADQTGEDLG 346
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
I + N+ I LSA G++ LRN L + + + E ++AR RH+ +L +A +L
Sbjct: 347 ICHVNDPTLIRLSAKTGEGVDALRNHLKECMGFSGNQEGG-FMARRRHLEALEKAAQHLD 405
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
I Q + E++AE+LR + LS I G+ T++DLL IF+ FCIGK
Sbjct: 406 -----IGQQQLEGYMAGEILAEELRIAQQHLSEITGEFTSDDLLGRIFTSFCIGK 455
>gi|161616963|ref|YP_001590928.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|194447879|ref|YP_002047875.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|197250655|ref|YP_002148780.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|198243069|ref|YP_002217792.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|200387122|ref|ZP_03213734.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|205359076|ref|ZP_02666996.2| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|386593516|ref|YP_006089916.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Salmonella enterica
subsp. enterica serovar Heidelberg str. B182]
gi|416474088|ref|ZP_11719961.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|418787239|ref|ZP_13343043.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|418791538|ref|ZP_13347296.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
gi|418797126|ref|ZP_13352816.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
gi|161366327|gb|ABX70095.1| hypothetical protein SPAB_04784 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194406183|gb|ACF66402.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|197214358|gb|ACH51755.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197937585|gb|ACH74918.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|199604220|gb|EDZ02765.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|205338960|gb|EDZ25724.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|322647617|gb|EFY44104.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|383800557|gb|AFH47639.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Salmonella enterica
subsp. enterica serovar Heidelberg str. B182]
gi|392766567|gb|EJA23341.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|392769480|gb|EJA26212.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
gi|392771642|gb|EJA28359.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
Length = 467
Score = 351 bits (901), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 282/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F + +
Sbjct: 14 MSHNDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKLPK---PRYADYLPFKDVDGS 70
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++R
Sbjct: 71 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSER 127
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 128 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 187
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 188 DFPDEEIDF-LSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLL 246
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 247 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 299
Query: 302 ERTWVELKNSDIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D I P N+P+ V NK D +G I
Sbjct: 300 ERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGI 359
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + + LSA G+++LRN L + +E +LAR RH+ +L EA +L
Sbjct: 360 SEVNGHSLVRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALAEAAEHLEQ 418
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 419 GKAQLLGAWAG-----ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 467
>gi|251791811|ref|YP_003006532.1| tRNA modification GTPase TrmE [Dickeya zeae Ech1591]
gi|247540432|gb|ACT09053.1| tRNA modification GTPase TrmE [Dickeya zeae Ech1591]
Length = 454
Score = 351 bits (901), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 188/476 (39%), Positives = 283/476 (59%), Gaps = 27/476 (5%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ I+ ATPPGRGGVGI+R+SG+ + + + K K PR+A Y F + +
Sbjct: 1 MSHTDTIVAQATPPGRGGVGILRISGRQASVVAQAILGKLPK---PRYADYLPFHDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL + G+R+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLK---RVAAQPGVRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS ++ L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSAVNSLQGVFSSRVHQLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNK--NDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
DFP+E + + + NE+I L + + ++ +L+R G+ VV+ G+PN GKSS
Sbjct: 175 DFPDEEIDFLSDGKIEAMLNEVI---GDLEAVRGEARQGSLLREGMKVVIAGRPNAGKSS 231
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N+L G D AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+I
Sbjct: 232 LLNALAGRDAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREAGDEVERI 284
Query: 300 GIERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQK 356
GIER W E++ +D ++++ D + + + P +P+ V NK D +G
Sbjct: 285 GIERAWQEIEQADRVLFMVDGTTTDAVEPAAIWPEFMARLPSRLPITVVRNKADVTGEPL 344
Query: 357 NINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYL 416
I N + I LSA G++LLR+ L + T E +LAR RH+ +L +A +L
Sbjct: 345 GIEEVNTYSLIRLSARTGDGVDLLRDHLKQSMGFTSNTEGG-FLARRRHLQALEQAAQHL 403
Query: 417 SCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 404 QQGHEQLVGAYAG-----ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|378581723|ref|ZP_09830367.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Pantoea
stewartii subsp. stewartii DC283]
gi|377815637|gb|EHT98748.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Pantoea
stewartii subsp. stewartii DC283]
Length = 454
Score = 351 bits (901), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 190/474 (40%), Positives = 283/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ + I+ ATPPGRGGVGI+R+SG + V K K PR+A Y SF + +
Sbjct: 1 MSHSDTIVAQATPPGRGGVGILRVSGPQAAEVARQVLGKLPK---PRYADYLSFNDSDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL + + GLR+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIVAL---PGLRIAQPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSVRVNQLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEGQLNAVIRDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D + T+ + + P +P+ V NK D +G +
Sbjct: 287 ERAWHEIEQADRVLFMVDGTTTQATEPAEIWPDFVARLPSQLPITVVRNKADITGETLGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N A I LSA GI+ LR+ L + +E +LAR RH+ +L A +L
Sbjct: 347 TDVNGHALIRLSARTSEGIDTLRDHLKQTMGFADNMEGG-FLARRRHLQALELAATHLEQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKHQLLGAWAG-----ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|417818605|ref|ZP_12465227.1| tRNA modification GTPase TrmE [Vibrio cholerae HE39]
gi|423961695|ref|ZP_17735801.1| tRNA modification GTPase TrmE [Vibrio cholerae HE-40]
gi|423986052|ref|ZP_17739357.1| tRNA modification GTPase TrmE [Vibrio cholerae HE-46]
gi|340044213|gb|EGR05166.1| tRNA modification GTPase TrmE [Vibrio cholerae HE39]
gi|408654886|gb|EKL26013.1| tRNA modification GTPase TrmE [Vibrio cholerae HE-40]
gi|408662840|gb|EKL33745.1| tRNA modification GTPase TrmE [Vibrio cholerae HE-46]
Length = 453
Score = 351 bits (901), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 192/468 (41%), Positives = 281/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG + + V +T L+PR+A Y F ++ +D+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGPLSAHVAQTVTGRT---LRPRYAEYLPFTDEDGQQLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F PHS+TGEDV+EL GHGGP+++ ML+ L+I G+R A PGEF++RAFLN+K
Sbjct: 63 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIK---GVRPARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FSK I+ L++ LI+LR +E + DFPEE
Sbjct: 120 MDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + + VEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DAVEKIGIERAWEE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFD---KKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D + TD + P NI + + NK D +G I + N
Sbjct: 292 IRQADRVLFMVDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQP 351
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G++ LR L + + + E ++AR RH+ +L A +L+ I
Sbjct: 352 TLIRLSAKTGQGVDALRQHLKECMGFSGNQEGG-FMARRRHLDALERAAEHLA-----IG 405
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 406 QQQLEGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|153830815|ref|ZP_01983482.1| tRNA modification GTPase TrmE [Vibrio cholerae 623-39]
gi|148873699|gb|EDL71834.1| tRNA modification GTPase TrmE [Vibrio cholerae 623-39]
Length = 453
Score = 351 bits (901), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 193/468 (41%), Positives = 279/468 (59%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG + + V +T L+PR+A Y F +N +D+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGPLAAHVAQTVTGRT---LRPRYAEYLPFTDENGQQLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F PHS+TGEDV+EL GHGGP+++ ML+ L+I G+R A PGEF++RAFLN+K
Sbjct: 63 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIN---GVRPARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FSK I+ L++ LI+LR +E + DFPEE
Sbjct: 120 MDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + + VEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DAVEKIGIERAWEE 291
Query: 308 LKNSDIIIYVQDARYDKHT---DFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D + T D + P NI + + NK D +G I + N
Sbjct: 292 IRQADRVLFMVDGTTTEATNPQDIWPDFVDRLPENIGITVIRNKADQTGEPLGICHVNQP 351
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G++ LR L + + E ++AR RH+ +L A +L I
Sbjct: 352 TLIRLSAKTGHGVDALRQHLKECMGFAGNQEGG-FMARRRHLDALERAAEHLD-----IG 405
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 406 QQQLEGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|374704464|ref|ZP_09711334.1| tRNA modification GTPase TrmE [Pseudomonas sp. S9]
Length = 455
Score = 351 bits (901), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 188/476 (39%), Positives = 285/476 (59%), Gaps = 25/476 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M I +AT GRGGVGI+R+SG ++ C++ +LKPR+A Y F+ + +
Sbjct: 1 MQVAGETIAAVATAQGRGGVGIVRVSGPLARAMAHAFCQR---ELKPRYAHYGPFYSEAD 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
++D+GL +YF P+S+TGEDV+EL GHGGP++L +LL C+++G RLA PGEF++
Sbjct: 58 TVLDEGLALYFPGPNSFTGEDVLELQGHGGPVVLDLLLRRCVQLGA----RLARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI AS+E AA++A+ SL G+FS+ ++ L ++LI+LR +E +
Sbjct: 114 RAFLNDKLDLAQAEAIADLIEASSEQAARNALRSLQGEFSRRVHGLTERLISLRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + + + + + L +++ +LL ++++ + AL+R+G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDFLADGH-VLSLLEEVRAELLNVLREAGQGALLRDGMTVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + VEKIG
Sbjct: 233 LNALAGREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTE-------DHVEKIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
+ER + +D I+ V D+ + D + + P V + NK D S +
Sbjct: 286 VERALKAISEADRILLVVDSTGPEAADPFMLWPEFLDLRPDPAKVTLIRNKADLSKDSVS 345
Query: 358 INYKNN-IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYL 416
+ ++ I SA G++LLR L + QT ESS + AR RH+ +L++A +L
Sbjct: 346 LEVSDDGHVTISFSAKSTEGLDLLREHLKACMGYQQTSESS-FSARRRHLDALHQAQVHL 404
Query: 417 SCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 405 DHGYAQLTLAGAG-----ELLAEDLRHAQQALGEITGAFSSDDLLGRIFSSFCIGK 455
>gi|163803610|ref|ZP_02197476.1| tRNA modification GTPase TrmE [Vibrio sp. AND4]
gi|159172604|gb|EDP57462.1| tRNA modification GTPase TrmE [Vibrio sp. AND4]
Length = 453
Score = 351 bits (901), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 193/468 (41%), Positives = 279/468 (59%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG ++ + T K+LKPR+A Y F + ++D+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGPKAN---QVALEVTGKKLKPRYAEYLPFQAGDGTVLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF PHS+TGEDV+EL GHGGP+++ ML+ L I +R A PGEF++RAFLN+K
Sbjct: 63 ALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILGIND---VRAARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FS+ I L++ LI+LR +E + DFPEE
Sbjct: 120 MDLTQAEAIADLIDASSEEAAKSALQSLQGQFSQRIQTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LADGKVSGDLQAIIDNLNAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + +EVEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVEKIGIERAWDE 291
Query: 308 LKNSDIIIYVQDARYDKHT---DFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
+ +D ++++ D T D + P +I + + NK D +G + I + N+
Sbjct: 292 IAQADRVLFMVDGTTTDATNPKDIWPDFVDRLPNSIGMTVIRNKADQTGEEMGICHVNDP 351
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G++ LR L + + + E ++AR RH+ SL A +L I
Sbjct: 352 TLIRLSAKTGTGVDALRTHLKECMGFSGNTEGG-FMARRRHLDSLERAAQHLQ-----IG 405
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 406 QEQLEGYMAGEILAEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|330447275|ref|ZP_08310925.1| tRNA modification GTPase TrmE [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328491466|dbj|GAA05422.1| tRNA modification GTPase TrmE [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 455
Score = 351 bits (901), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 192/468 (41%), Positives = 287/468 (61%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ ATPPGRGGVGIIR+SG E+ ++LK R+A Y F ++ +D+G+
Sbjct: 8 IVAQATPPGRGGVGIIRVSGPKAK---EVALAVAGRELKTRYAEYLPFKNEDGIALDQGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++FK P+S+TGEDV+EL GHGGP+++ M++ L+I G+R A PGEF++RAF+N+K
Sbjct: 65 ALFFKGPNSFTGEDVLELQGHGGPVLMDMMIRRILKID---GIRAARPGEFSERAFMNDK 121
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AAKSA SL G FS +N L++ LI+LR +E + DFPEE
Sbjct: 122 LDLAQAEAIADLIDASSEEAAKSAFKSLQGAFSTKVNDLVEALIHLRIYVEAAIDFPEEE 181
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L I ++L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 182 IDF-LSDGKVSGDLNGIIERLNDVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 240
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
D AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E
Sbjct: 241 DSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWDE 293
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++++D ++++ D+ TD + I+ P ++ + + NK + +G Q I + NN
Sbjct: 294 IEHADRVLFMVDSTTTDATDPKEIWPDFIERLPADMGLTVIRNKAELTGEQTGICHANNP 353
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G++ LR L + + T E ++AR RH+ +L A +L I
Sbjct: 354 TLIRLSARTGDGVDALREHLKQCMGFSGTTEGG-FMARRRHLDALERAAEHLD----IGK 408
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + F E++AE+LR + LS I G+ T++DLL IF+ FCIGK
Sbjct: 409 EQLEGFMAG-EILAEELRLAQQHLSEITGEFTSDDLLGRIFTSFCIGK 455
>gi|229530209|ref|ZP_04419598.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae
12129(1)]
gi|229332342|gb|EEN97829.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae
12129(1)]
Length = 453
Score = 351 bits (901), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 195/473 (41%), Positives = 283/473 (59%), Gaps = 33/473 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG + + V +T L+PR+A Y F ++ +D+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGPLAAHVAQTVTGRT---LRPRYAEYLPFTDEDGQQLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F PHS+TGEDV+EL GHGGP+++ ML+ L+I G+R A PGEF++RAFLN+K
Sbjct: 63 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIK---GVRPARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FSK I+ L++ LI+LR +E + DFPEE
Sbjct: 120 MDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + + VEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DAVEKIGIERAWEE 291
Query: 308 LKNSDIIIYVQDARYDKHTD--------FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNIN 359
++ +D ++++ D + TD FDK P NI + + NK D +G I
Sbjct: 292 IRQADRVLFMVDGTTTEATDPQDIWPDFFDK-----LPENIGITVIRNKADQTGEPLGIC 346
Query: 360 YKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCA 419
+ N I LSA G++ LR L + + + E ++AR RH+ +L A +L+
Sbjct: 347 HVNQPTLIRLSAKTGQGVDALRQHLKECMGFSGNQEGG-FMARRRHLDALERAAEHLA-- 403
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
I Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 404 ---IGQQQLEGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|307261970|ref|ZP_07543627.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|306868331|gb|EFN00151.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
Length = 452
Score = 351 bits (901), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 198/472 (41%), Positives = 290/472 (61%), Gaps = 31/472 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKT-KKQLKPRFATYSSFFCKNNNIIDKG 66
I+ ATP GRGGVGI+R+SG + + V K+ K+LKPR A Y F ++ ++D+G
Sbjct: 5 IVAQATPIGRGGVGILRISG----PLAQEVAKEVLGKELKPRLANYLPFKDQDGTVLDQG 60
Query: 67 LVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNN 126
+ ++FKAP+S+TGEDV+EL GHGG +IL +LL L I G+R+A GEF+++AFLN+
Sbjct: 61 IALFFKAPNSFTGEDVLELQGHGGQVILDILLKRILTIK---GIRIARAGEFSEQAFLND 117
Query: 127 KLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEE 186
KLDL Q EAI DLI+A++E AA+SA+ SL G+FS IN L+D +I LRT +E + DFP+E
Sbjct: 118 KLDLAQAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDE 177
Query: 187 NQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVG 246
+ L L I ++L + ++ K+ A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 178 EIDF-LADGKIEGHLNDIIRQLNGVRKEAKQGAILREGMKVVIAGRPNAGKSSLLNALAG 236
Query: 247 SDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWV 306
+ AIVT+IAGTTRD + + I I+ I DTAG +++ +EVEKIGI+R W
Sbjct: 237 REAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVEKIGIQRAWD 289
Query: 307 ELKNSDIIIYVQDARYDKHTDFDKK---IIKNFPMNIPVIYVWNKIDYSGHQKNINYKNN 363
E++ +D ++ + D+ F + + P +IPV + NK+D SG + + +
Sbjct: 290 EIEQADHVLLMIDSTEQTAEAFKTEWADFLAKLPQSIPVTVIRNKVDLSGEAEGLQELDG 349
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP---YLARERHIHSLNEANYYLSCAI 420
I LSA ++G++LLR L +K+ +SS +LAR RH+ +L A +L
Sbjct: 350 FTLIRLSAQTKVGVDLLREHL----KKSMGYQSSTEGGFLARRRHLQALETAAEHLERGH 405
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ Q EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 406 IQLTQFFAG-----ELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 452
>gi|381153771|ref|ZP_09865640.1| putative GTPase [Methylomicrobium album BG8]
gi|380885743|gb|EIC31620.1| putative GTPase [Methylomicrobium album BG8]
Length = 448
Score = 351 bits (901), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 193/465 (41%), Positives = 276/465 (59%), Gaps = 25/465 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IATPPG GGVGI+R+SG + I E + K L PR A Y+ F + ++ID G+
Sbjct: 9 IAAIATPPGNGGVGIVRISGSLVPRIAEQLLTKP---LPPRLAQYTPFLDADRSVIDTGI 65
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P SYTGEDV+EL GHGG I+L M+L L S+G RLA PGEFT+RAFLN K
Sbjct: 66 ALYFPGPASYTGEDVLELQGHGGAIVLDMMLRRVL----SVGARLANPGEFTERAFLNGK 121
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EA+ DLI + TE +A+SA +S+ G FS+LIN L+++L +LRT +E + DF EE
Sbjct: 122 LDLAQAEAVADLIESGTEQSARSAQMSMQGAFSRLINELVEELTHLRTYVEAAIDFVEEE 181
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ N + + ++ +I Q K+ L+R+G+ VVL G+PN GKSSL N+L G
Sbjct: 182 IDF-LSDGIVENRIAALLVRIEQIRQTAKQGRLLRDGMTVVLAGKPNAGKSSLLNALAGH 240
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + IQ++ I DTAG ++++ N VE+ GI R + E
Sbjct: 241 EAAIVTDIAGTTRDVLRERIQLDGMPLHIIDTAG-------LRESDNAVEREGIRRAFEE 293
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANI 367
++ +D+I+ + DAR + I + P +IP+ V+NKID G + I
Sbjct: 294 IRKADMILLLIDAREPDA----EAIRRTLPDSIPITEVYNKIDLLGRAPETIETTDGTQI 349
Query: 368 YLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSE 427
YLS G++ L L + + E ++AR RH+ +L++ + A+ + +
Sbjct: 350 YLSIKTGEGMDFLTRHLKQSVGFNDSAEHV-FIARRRHLEALDQGRVLIESALFQLQNNR 408
Query: 428 KNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AEDLR L I G+ T++DLL IFS FCIGK
Sbjct: 409 AD-----ELVAEDLRQAQNALGEITGQVTSDDLLGKIFSSFCIGK 448
>gi|269140891|ref|YP_003297592.1| hypothetical protein ETAE_3550 [Edwardsiella tarda EIB202]
gi|387869336|ref|YP_005700805.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Edwardsiella tarda
FL6-60]
gi|267986552|gb|ACY86381.1| hypothetical protein ETAE_3550 [Edwardsiella tarda EIB202]
gi|304560649|gb|ADM43313.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Edwardsiella tarda
FL6-60]
Length = 455
Score = 351 bits (901), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 188/477 (39%), Positives = 286/477 (59%), Gaps = 27/477 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M++ + I+ AT PGRGGVGI+R+SG ++ + K K PR+A Y F +
Sbjct: 1 MISSSDTIVAQATAPGRGGVGILRVSGPQAQAVALALLGKLPK---PRYADYLPFRDHDG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
++D+G+ +YF P+S+TGEDV+EL GHGGP+IL +LL L++ GLR+A PGEF++
Sbjct: 58 TMLDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILQL---PGLRIARPGEFSE 114
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+K+DL Q EAI DLI+AS+E AA+SA+ SL G FS I+ L++ LI+LR +E +
Sbjct: 115 RAFLNDKMDLAQAEAIADLIDASSEQAARSAVNSLQGVFSARIHQLVESLIHLRIYVEAA 174
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 IDFPDEEIDF-LSDGKVEAQLNAVMDSLAGVRTEARQGSLLREGMKVVIAGRPNAGKSSL 233
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IG
Sbjct: 234 LNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIG 286
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
I R W E++ +D ++++ D TD I P ++P+ V NK D +G
Sbjct: 287 IARAWQEIEQADRVLFMVDGTTTDATDPAAIWPDFIARLPASLPITVVRNKADVTGEPLG 346
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
I+ + + LSA G+++LR+ L + ++E +LAR RH+ +L++A +L
Sbjct: 347 ISDGDGHTLVRLSARTGAGVDVLRDHLKRSMGFDTSLEGG-FLARRRHLQALDQAALHL- 404
Query: 418 CAIKIINQSEKNFEKNL--ELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + + EL+AE+LR + LS I G+ T++DLL IF+ FCIGK
Sbjct: 405 ------QQGKDQLLGAMAGELLAEELRLAQQSLSEITGEFTSDDLLGRIFTSFCIGK 455
>gi|429098786|ref|ZP_19160892.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Cronobacter
dublinensis 582]
gi|426285126|emb|CCJ87005.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Cronobacter
dublinensis 582]
Length = 454
Score = 351 bits (901), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 189/474 (39%), Positives = 282/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG+ + + V K K R+A Y F +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRVSGQQARDVAQAVLGKLPKS---RYADYLPFKDADGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D TD + I P +P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDATDPAQIWPDFIARLPATLPITVVRNKADVTGEAPGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + + LSA G+++LR+ L + +E +LAR RH+ +L A +L
Sbjct: 347 SEVNGHSLVRLSARTSDGVDVLRSHLKQSMGFDTRMEGG-FLARRRHLQALETAANHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|238913095|ref|ZP_04656932.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
Length = 467
Score = 351 bits (901), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 282/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F + +
Sbjct: 14 MSHNDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKLPK---PRYADYLPFKDVDGS 70
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++R
Sbjct: 71 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSER 127
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 128 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 187
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 188 DFPDEEIDF-LSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLL 246
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 247 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 299
Query: 302 ERTWVELKNSDIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D I P N+P+ V NK D +G I
Sbjct: 300 ERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGI 359
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + + LSA G+++LRN L + +E +LAR RH+ +L EA +L
Sbjct: 360 SEVNGHSLVRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALAEAADHLEQ 418
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 419 GKAQLLGAWAG-----ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 467
>gi|237809900|ref|YP_002894340.1| tRNA modification GTPase TrmE [Tolumonas auensis DSM 9187]
gi|237502161|gb|ACQ94754.1| tRNA modification GTPase TrmE [Tolumonas auensis DSM 9187]
Length = 453
Score = 351 bits (901), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 197/474 (41%), Positives = 284/474 (59%), Gaps = 35/474 (7%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ +ATPPGRGG+GI+R+SG + E V K K R A F + +D+G+
Sbjct: 6 IVALATPPGRGGIGILRISGPLCKLVAEQVLGKIPKV---RHAELLPFCDVDGKALDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+ FKAP+S+TGEDV+EL GHGGP++L MLL L I G+RLA PGEF++RAF+N+K
Sbjct: 63 ALLFKAPYSFTGEDVLELQGHGGPVVLDMLLRRILTIN---GVRLARPGEFSERAFMNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI A++E AA+SAM SL G+FS I+ L+D L NLR +E + DFPEE
Sbjct: 120 LDLAQAEAIADLIEATSEQAARSAMQSLQGEFSTRIHQLVDSLTNLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ N L + L ++ ++ ++ AL+R+G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LSDGRIANALYGVMDDLAQVKREAQQGALLRDGMKVVIAGRPNAGKSSLLNALAGR 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D + + VEKIGIER W E
Sbjct: 239 ESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTD-------DTVEKIGIERAWAE 291
Query: 308 LKNSDIIIYV-----QDAR--YDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
++ +D ++++ DAR +D DF + P N+ + V NK D +G ++
Sbjct: 292 IEQADRVLFMVDGTTTDARNPHDLWPDF----VDRLPENLGITVVRNKADLTGEALTVSE 347
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
+N A +SA +G++ LR L + T+E ++AR RH+ ++ A+ L
Sbjct: 348 ENGYAVYPISAKTGLGLDALREHLKACMGFQSTLEGG-FIARRRHLDAIERASERL---- 402
Query: 421 KIINQSEKNFEKNL--ELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++++ E L EL+AE+LR E LS I G + +DLL IFS FCIGK
Sbjct: 403 ---DEAKVQLEIYLAGELVAEELRLAQEALSEITGAFSADDLLGRIFSSFCIGK 453
>gi|90415379|ref|ZP_01223313.1| tRNA modification GTPase [gamma proteobacterium HTCC2207]
gi|90332702|gb|EAS47872.1| tRNA modification GTPase [marine gamma proteobacterium HTCC2207]
Length = 454
Score = 351 bits (901), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 289/474 (60%), Gaps = 36/474 (7%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ IAT PGRGGVGI+R+SG ++ + + KT L PR AT+S F N +ID+G+
Sbjct: 8 IVAIATAPGRGGVGIVRVSGPDISAFTSAITGKT---LLPRQATFSHFNGVNGEVIDEGV 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
IYF AP S+TGE V+EL GHGGP+IL L+ C+++G R A PGEF++RAFLN+K
Sbjct: 65 AIYFPAPASFTGEHVLELQGHGGPVILDALVQRCVQLGA----RPARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++ AA+ A+ SL G FS+L+N L+++LIN+R +E + DFPEE
Sbjct: 121 LDLAQAEAIADLIDATSIQAARCAVRSLQGDFSRLVNGLVERLINIRLYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + ++ N L K+++ L + Q ++ +L+R+G+ VVL G+PN GKSSL N+L G
Sbjct: 181 IDFLADERLSLN-LQKLREALTNTLSQAQQGSLLRDGMTVVLAGKPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
D AIVT AGTTRD + +TI ++ I DTA +++ + +E+E GI R W+E
Sbjct: 240 DAAIVTPKAGTTRDVLRETITLDGMPLHIVDTA-------RLRDSDDEIELEGIRRAWLE 292
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNFP----MNIPVIYVWNKIDYSGHQ--KNINYK 361
++ +D ++++ DA + D + F P+ V NKID SGHQ + +
Sbjct: 293 IEQADQLLFLVDANESDNPDLAAIWPEYFARYGGAKQPITVVLNKIDESGHQPGRQVGDA 352
Query: 362 NNIANIYLSASKRIGINLLRNTL---LDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
NN A +SA + GI+ L L + E+++ + + AR RH+ +L +A
Sbjct: 353 NNFA---ISAKHKTGIDQLVAFLQSSMGFDERSEGV----FSARRRHLAALEKA-----L 400
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ ++ Q + + EL+AEDLR LS I G +++DLL +IFS FCIGK
Sbjct: 401 ELVVVGQRQLSGSGAGELLAEDLRLAQAHLSEITGVFSSDDLLGHIFSSFCIGK 454
>gi|426412334|ref|YP_007032433.1| tRNA modification GTPase TrmE [Pseudomonas sp. UW4]
gi|426270551|gb|AFY22628.1| tRNA modification GTPase TrmE [Pseudomonas sp. UW4]
Length = 456
Score = 351 bits (900), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 192/479 (40%), Positives = 285/479 (59%), Gaps = 30/479 (6%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKK-TKKQLKPRFATYSSFFCKN 59
M I +AT GRGGVGI+R+SG + + K + + LKPRFA Y FF ++
Sbjct: 1 MSVPRETIAAVATAQGRGGVGIVRISGP----LASVAAKAFSGRDLKPRFAHYGPFFGEH 56
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFT 119
+ ++D+G+ +YF P+S+TGEDV+EL GHGGPI+L MLL CLE+G RLA PGEF+
Sbjct: 57 DEVLDQGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLKRCLELG----CRLARPGEFS 112
Query: 120 KRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEF 179
+RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G FS ++ L ++LI LR +E
Sbjct: 113 ERAFLNDKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSSRVHNLTEQLIGLRIYVEA 172
Query: 180 SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
+ DFPEE + + + + + L K++ +L ++++ + AL+R+G+ VV+ G+PN GKSS
Sbjct: 173 AIDFPEEEIDFLADGH-VLSMLDKVRDELSTVMREAGQGALLRDGMTVVIAGRPNAGKSS 231
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + + VEKI
Sbjct: 232 LLNALAGREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTD-------DHVEKI 284
Query: 300 GIERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356
G+ER + +D ++ V DA + D + ++ P V + NK D +G
Sbjct: 285 GVERALKAIGEADRVLLVVDATAPEAIDPFALWPEFLETRPDPAKVTLIRNKADLTGEAI 344
Query: 357 NINYKNNIANIYLSASKR---IGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEAN 413
+ ++ ++ +S S R +G+ LLR+ L + QT ESS + AR RH+ +L A+
Sbjct: 345 AMEISDD-GHVTISLSARSGGVGLELLRDHLKACMGYEQTSESS-FSARRRHLEALRHAS 402
Query: 414 YYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L +++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 403 AALEH-----GRAQLTLAGAGELLAEDLRQAQQSLGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|167548868|ref|ZP_02342627.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|375003712|ref|ZP_09728051.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Infantis str. SARB27]
gi|421886822|ref|ZP_16317992.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
gi|205325776|gb|EDZ13615.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|353074627|gb|EHB40388.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Infantis str. SARB27]
gi|379983628|emb|CCF90265.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
Length = 454
Score = 351 bits (900), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 282/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F + +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKLPK---PRYADYLPFKDVDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D I P N+P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + + LSA G+++LRN L + +E +LAR RH+ +L EA +L
Sbjct: 347 SEVNGHSLVRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALAEAADHLEQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|90194080|gb|ABD92601.1| ThdF [Lonepinella koalarum]
Length = 436
Score = 351 bits (900), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 192/456 (42%), Positives = 280/456 (61%), Gaps = 23/456 (5%)
Query: 13 TPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFK 72
TP GRGGVGI+R+SG + + V K LKPRFA Y F ++ ++D+G+ ++FK
Sbjct: 1 TPIGRGGVGILRVSGPLAMEVAQAVVGKA---LKPRFANYLPFKNVDDTVLDQGIALFFK 57
Query: 73 APHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQ 132
+PHS+TGEDV+EL GHGG ++L +LL L++ G+RLA PGEF+++AFLN KLDL Q
Sbjct: 58 SPHSFTGEDVLELQGHGGQMVLDLLLKRILQVQ---GVRLARPGEFSEQAFLNGKLDLAQ 114
Query: 133 VEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELIL 192
EAI DLI+A++E AA+SA+ SL G+FS +N L+D +I LRT +E + DFP+E + L
Sbjct: 115 AEAIADLIDATSEQAARSALKSLQGEFSNKVNQLVDNVIYLRTYVEAAIDFPDEEIDF-L 173
Query: 193 NKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIV 252
N+L +I +L K+ + K+ +++R G+ VV+ G+PN GKSSL N+L G D AIV
Sbjct: 174 ADGKIENKLNEIIVQLDKVRAEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGRDAAIV 233
Query: 253 TSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSD 312
T+IAGTTRD + + I I+ I DTAG+ D +EVE+IGI R W E++ +D
Sbjct: 234 TNIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT-------DEVERIGINRAWHEIEQAD 286
Query: 313 IIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYL 369
++ + D+ D +K + ++ P ++PV + NK D SG ++ +N I L
Sbjct: 287 RVLLMLDSTDADSADLNKVRLEFLQKLPESLPVTIIRNKTDLSGENTGLSEENGYITIRL 346
Query: 370 SASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEKN 429
SA + G++LLR L + QT +LAR RH+ +L +A +L + Q
Sbjct: 347 SAQTQQGVDLLREHLKQTM-GYQTTTEGGFLARRRHLEALEKAAEHLQLGHIQLTQFHAG 405
Query: 430 FEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR LS I GK T++DLL NIF
Sbjct: 406 -----ELLAEELRLVQTYLSEITGKFTSDDLLGNIF 436
>gi|398961119|ref|ZP_10678517.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM30]
gi|398153070|gb|EJM41577.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM30]
Length = 456
Score = 351 bits (900), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 194/477 (40%), Positives = 282/477 (59%), Gaps = 26/477 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M I +AT GRGGVGI+R+SG + + + ++LKPR+A Y FF +
Sbjct: 1 MSAPRETIAAVATAQGRGGVGIVRISGPLASAAANAI---SGRELKPRYAHYGPFFSADQ 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
++D+GL +YF P+S+TGEDV+EL GHGGPI+L MLL CLE+G RLA PGEF++
Sbjct: 58 QVLDEGLALYFPGPNSFTGEDVLELQGHGGPIVLDMLLKRCLELG----CRLARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G FS+ ++ L ++LI LR +E +
Sbjct: 114 RAFLNDKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVHNLTEQLIGLRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + + + + + L K++++L ++++ + AL+R+G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDFLADGH-VLSMLDKVREELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + + VEKIG
Sbjct: 233 LNALAGREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTD-------DHVEKIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
+ER + +D ++ V DA + TD + ++ P V + NK D +G
Sbjct: 286 VERALKAITEADRVLLVVDATAPEATDPFALWPEFLETRPDPAKVTLIRNKADLTGEAIA 345
Query: 358 INYKNN-IANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYY 415
+ ++ I LSA S G+ LLR L + QT ESS + AR RH+ +L A+
Sbjct: 346 LEVSDDGHVTISLSAKSAGEGLELLREHLKACMGYEQTSESS-FSARRRHLEALRHASAA 404
Query: 416 LSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L +++ EL+AEDLR L I G +++DLL IFS FCIGK
Sbjct: 405 LEH-----GRAQLTLAGAGELLAEDLRQAQHSLGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|87122923|ref|ZP_01078788.1| tRNA modification GTPase [Marinomonas sp. MED121]
gi|86161796|gb|EAQ63096.1| tRNA modification GTPase [Marinomonas sp. MED121]
Length = 460
Score = 351 bits (900), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 206/471 (43%), Positives = 281/471 (59%), Gaps = 29/471 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKP--RFATYSSFFCKNNNIIDK 65
I ATPPGRGGVGIIRLSG SI E V KP R A Y F ID
Sbjct: 13 IAAQATPPGRGGVGIIRLSGPLSLSIAEQVLG-----FKPTARHAHYGPFKDAEGEQIDL 67
Query: 66 GLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLN 125
G+ IYF P+S+TGEDVIEL GHGGP+I+ MLLS LE+G RLA PGEF++RAFLN
Sbjct: 68 GIAIYFPNPNSFTGEDVIELQGHGGPVIIDMLLSRVLELGA----RLARPGEFSERAFLN 123
Query: 126 NKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPE 185
+K+DL Q EAI DLI++++ AAK A+ SL G FSK I+ L++ LI+LR +E + DFPE
Sbjct: 124 DKMDLTQAEAIADLIDSASTQAAKCALRSLQGAFSKRIDELVESLIHLRIYVEAAIDFPE 183
Query: 186 ENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLV 245
E + I N+L I++ L+ + ++ K+ A+IR G+NVV+ G+PN GKSSL N+L
Sbjct: 184 EEIDFI-GDGKVANDLKGIQQNLIAVQKEAKQGAIIREGMNVVIAGRPNAGKSSLLNALS 242
Query: 246 GSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTW 305
G D AIVT+I GTTRD + + I I+ I DTAG+ D + +EVE+IGI+R W
Sbjct: 243 GKDSAIVTNIEGTTRDVLREQIHIDGMPLHIIDTAGLRD-------SPDEVEQIGIQRAW 295
Query: 306 VELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIP----VIYVWNKIDYSGHQKNINYK 361
E+ +D I+ + D++ + I F + + V NK+D + + +
Sbjct: 296 QEIHKADRILLMVDSKSSSNETDPAHIWPEFVAQLANQDNLTLVRNKVDLTTEKVGVTQV 355
Query: 362 NNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIK 421
NNI I LSA + G+ LL L D++ T E ++AR RHI +LN+A+ +L+
Sbjct: 356 NNIPVISLSAKNQDGVELLTQHLKDVMGYDSTTEGG-FIARRRHIEALNKASEFLNAGSL 414
Query: 422 IINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ +F EL+AEDL+ LS I G T++DLL IF FCIGK
Sbjct: 415 QLH----DFGAG-ELLAEDLKEAQNALSEITGAFTSDDLLGRIFGSFCIGK 460
>gi|300719145|ref|YP_003743948.1| tRNA modification GTPase [Erwinia billingiae Eb661]
gi|299064981|emb|CAX62101.1| tRNA modification GTPase [Erwinia billingiae Eb661]
Length = 454
Score = 351 bits (900), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 189/474 (39%), Positives = 286/474 (60%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ + I+ ATPPGRGGVGI+R+SG + + + K K PR+A Y F +
Sbjct: 1 MSHSETIVAQATPPGRGGVGILRISGSKAAEVAQALLGKLPK---PRYADYLPFRDTDGK 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL + + GLR+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIVAM---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSLRVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLEQVIADLDGVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D T+ + I P +P+ V NK D +G + +
Sbjct: 287 ERAWNEIEQADRVLFMVDGTTTGATEPAEIWPDFIARLPATLPITVVRNKADVTGEAQGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N + I LSA GI++LRN L + + + +E +LAR RH+ +L A +L
Sbjct: 347 TEVNGHSLIRLSARTGDGIDVLRNHLKESMGFSGNMEGG-FLARRRHLQALELAATHL-- 403
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + + + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 404 ---LQGREQLLGARAGELLAEELRVAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|417822168|ref|ZP_12468770.1| tRNA modification GTPase TrmE [Vibrio cholerae HE48]
gi|340049781|gb|EGR10693.1| tRNA modification GTPase TrmE [Vibrio cholerae HE48]
Length = 453
Score = 351 bits (900), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 191/468 (40%), Positives = 281/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG + + V +T L+PR+A Y F ++ +D+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGPLAAHVAQTVTGRT---LRPRYAEYLPFTDEDGQQLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F PHS+TGEDV+EL GHGGP+++ ML+ L+I G+R A PGEF++RAFLN+K
Sbjct: 63 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIK---GVRPARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FSK I+ L++ LI+LR +E + DFPEE
Sbjct: 120 MDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LADGKVSTDLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + + VEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DAVEKIGIERAWEE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFD---KKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D + TD + P NI + + NK D +G I + N
Sbjct: 292 IRQADRVLFMVDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQP 351
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G++ LR + + + + E ++AR RH+ +L A +L+ I
Sbjct: 352 TLIRLSAKTGQGVDALRQHVKECMGFSGNQEGG-FMARRRHLDALERAAEHLA-----IG 405
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 406 QQQLEGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|398947764|ref|ZP_10672400.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM33]
gi|398161676|gb|EJM49903.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM33]
Length = 456
Score = 351 bits (900), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 194/478 (40%), Positives = 284/478 (59%), Gaps = 28/478 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKK-TKKQLKPRFATYSSFFCKN 59
M I +AT GRGGVGI+R+SG + + K + ++LKPRFA Y FF ++
Sbjct: 1 MSVPRETIAAVATAQGRGGVGIVRISGP----LASVAAKAFSGRELKPRFAHYGPFFSEH 56
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFT 119
+ ++D+G+ +YF P+S+TGEDV+EL GHGGPI+L MLL CLE+G RLA PGEF+
Sbjct: 57 DEVLDQGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLKRCLELG----CRLARPGEFS 112
Query: 120 KRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEF 179
+RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G FS ++ L ++LI LR +E
Sbjct: 113 ERAFLNDKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSSRVHNLTEQLIGLRIYVEA 172
Query: 180 SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
+ DFPEE + + + + + L K++ +L ++++ + AL+R+G+ VV+ G+PN GKSS
Sbjct: 173 AIDFPEEEIDFLADGH-VLSMLDKVRDELSTVMREAGQGALLRDGMTVVIAGRPNAGKSS 231
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + + VEKI
Sbjct: 232 LLNALAGREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTD-------DHVEKI 284
Query: 300 GIERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356
G+ER + +D ++ V DA + D + ++ P V + NK D +G
Sbjct: 285 GVERALKAIGEADRVLLVVDATAPEALDPFALWPEFLETRPDPAKVTLIRNKADLTGEAI 344
Query: 357 NINYKNN-IANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ ++ I LSA S G+ LLR+ L + QT ESS + AR RH+ +L A+
Sbjct: 345 ALEISDDGHVTISLSAKSGGAGLELLRDHLKACMGYEQTSESS-FSARRRHLEALRHASA 403
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L +++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 404 ALEH-----GRAQLTLAGAGELLAEDLRQAQQSLGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|261213270|ref|ZP_05927552.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio sp. RC341]
gi|260837544|gb|EEX64247.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio sp. RC341]
Length = 453
Score = 351 bits (900), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 193/468 (41%), Positives = 279/468 (59%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG + + V T + L+PR+A Y F +N +D+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGPLAAHVAQTV---TGRMLRPRYAEYLPFTDENGQQLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F PHS+TGEDV+EL GHGGP+++ ML+ L+I G+R A PGEF++RAFLN+K
Sbjct: 63 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIN---GVRPARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FSK I+ L+ LI+LR +E + DFPEE
Sbjct: 120 MDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVGSLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + + VEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DAVEKIGIERAWEE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFD---KKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D + TD + P NI + + NK D +G I + N
Sbjct: 292 IRQADRVLFMVDGTTTEATDPQDIWPDFVDRLPENIGITVIRNKADQTGEPLGICHVNQP 351
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G++ LR L + + + E ++AR RH+ +L A +L I
Sbjct: 352 TLIRLSAKTGHGVDALRQHLKECMGFSGNQEGG-FMARRRHLDALERAAEHLD-----IG 405
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 406 QQQLEGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|359394561|ref|ZP_09187614.1| tRNA modification GTPase mnmE [Halomonas boliviensis LC1]
gi|357971808|gb|EHJ94253.1| tRNA modification GTPase mnmE [Halomonas boliviensis LC1]
Length = 456
Score = 351 bits (900), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 192/469 (40%), Positives = 274/469 (58%), Gaps = 27/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I +ATPPGRGGVGIIR+SG I E + PR+A Y F +I D+G+
Sbjct: 11 IAALATPPGRGGVGIIRVSGPACREIAEAMVGHCPA---PRYAHYGPFQGAEESI-DEGI 66
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F PHS+TGEDV+EL GHGGPII+ MLL C+ ++G RLA PGEF++RAFLN+K
Sbjct: 67 ALFFNGPHSFTGEDVLELQGHGGPIIMDMLLERCV----ALGARLARPGEFSERAFLNDK 122
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI A++ SAA++A+ SL G+FSK ++ L+++LI LR +E + DFPEE
Sbjct: 123 LDLAQAEAIADLIEATSRSAAENAVRSLQGEFSKRVSTLVERLIELRVYVEAAIDFPEEE 182
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + + L +++ L + Q + AL+R G++VV+ G+PN GKSSL N+L
Sbjct: 183 IDFLADGH-VAQHLSSVQQALSDVRQAAGQGALLREGMSVVIAGRPNAGKSSLLNALTEQ 241
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
D AIVT IAGTTRD + + I I+ I DTAG+ D + VEKIG+ R W E
Sbjct: 242 DTAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDTP-------DAVEKIGVARAWAE 294
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIP----VIYVWNKIDYSGHQKNINYKNN 363
++ +D ++ + DA TD I +F +P + V NKID S I+
Sbjct: 295 IEKADRVLLLVDASTTASTD-PMAIWPDFVARLPDQARLTLVRNKIDTSAEPAGIDLSTT 353
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
+ LSA +G++ L+ L D++ T E + AR RH+ +L+ A L
Sbjct: 354 PPTLRLSAKTGVGVDNLKAHLKDVMGFAATTEGR-FSARRRHLDALDRAMAALDT----- 407
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ + EL+AEDLR + L I G+ + +DLL IF FCIGK
Sbjct: 408 GRAQLDGYGAGELLAEDLRDAQQALGEITGEFSADDLLGEIFGSFCIGK 456
>gi|307133252|ref|YP_003885268.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Dickeya
dadantii 3937]
gi|306530781|gb|ADN00712.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Dickeya
dadantii 3937]
Length = 454
Score = 351 bits (900), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 189/480 (39%), Positives = 284/480 (59%), Gaps = 35/480 (7%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ I+ ATPPGRGGVGI+R+SG+ ++ + V K K PR+A Y F + +
Sbjct: 1 MSHTDTIVAQATPPGRGGVGILRISGRTAAAVAQAVLGKLPK---PRYADYLPFHDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL + + +R+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIVALPD---VRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS I+ L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSAVNSLQGVFSTRIHQLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNK------NDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235
DFP+E + + + ND +L ++ + ++ +L+R G+ VV+ G+PN
Sbjct: 175 DFPDEEIDFLSDGKIEAMLNDVIGDLGAVRA-------EARQGSLLREGMKVVIAGRPNA 227
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKSSL N+L G D AIVT IAGTTRD + + I I+ I DTAG+ D + +E
Sbjct: 228 GKSSLLNALAGRDAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DE 280
Query: 296 VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYS 352
VE+IGIER W E++ +D ++++ D + + + P +P+ V NK D +
Sbjct: 281 VERIGIERAWQEIEQADRVLFMVDGTTTDAMEPAAIWPEFMARLPKTLPITVVRNKADVT 340
Query: 353 GHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEA 412
G I N + I LSA G++LLR+ L + T E +LAR RH+ +L +A
Sbjct: 341 GEPLGIEDVNTYSLIRLSARTGDGVDLLRDHLKQSMGFTSNTEGG-FLARRRHLQALEQA 399
Query: 413 NYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L + + + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 400 AQHLQQGHEQLVGAYAG-----ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|292901145|ref|YP_003540514.1| tRNA modification GTPase [Erwinia amylovora ATCC 49946]
gi|291200993|emb|CBJ48132.1| probable tRNA modification GTPase [Erwinia amylovora ATCC 49946]
Length = 454
Score = 351 bits (900), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 283/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
+ + I+ ATPPGRGGVGI+R+SG + +++ K K PR A Y F + +
Sbjct: 1 MNHSDTIVAQATPPGRGGVGILRVSGNKAARVAQLLLGKLPK---PRHADYLPFCDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F PHS+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 58 TLDQGIALWFPGPHSFTGEDVLELQGHGGPVILDLLLKRILSL---PGLRIANPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSAVNSLQGVFSTRVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLHQVIADLDAVRSEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + IQI+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIQIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D TD + I P +PV V NK D +G + I
Sbjct: 287 ERAWHEIEQADHVLFMVDGTTTDATDPAEIWPDFIARLPETLPVTVVRNKADITGEIREI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + I LSA GI LRN L + ++E +LAR RH+ +L A +L
Sbjct: 347 SEVNGHSLIRLSARTGEGIENLRNHLKLSMGWHGSMEGG-FLARRRHLQALELAATHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ +++DLL IFS FCIGK
Sbjct: 406 GKHQLLAARAG-----ELLAEELRMAQQALSEITGEFSSDDLLGRIFSSFCIGK 454
>gi|262402089|ref|ZP_06078653.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio sp. RC586]
gi|262351735|gb|EEZ00867.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio sp. RC586]
Length = 453
Score = 350 bits (899), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 192/468 (41%), Positives = 280/468 (59%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG + + V +T L+PR+A Y F ++ +D+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGPLSAHVAQTVTGRT---LRPRYAEYLPFTDEDGQQLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F PHS+TGEDV+EL GHGGP+++ ML+ L+I G+R A PGEF++RAFLN+K
Sbjct: 63 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIN---GVRPARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FSK I+ L++ LI+LR +E + DFPEE
Sbjct: 120 MDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + + VEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DAVEKIGIERAWEE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D + TD + + P NI + + NK D +G I + N
Sbjct: 292 IRQADRVLFMVDGTTTEATDPQEIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQP 351
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G++ LR L + + E ++AR RH+ +L A +L I
Sbjct: 352 TLIRLSAKTGQGVDALRQHLKECMGFAGNQEGG-FMARRRHLDALERAAEHLD-----IG 405
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 406 QQQLEGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|343507253|ref|ZP_08744695.1| tRNA modification GTPase TrmE [Vibrio ichthyoenteri ATCC 700023]
gi|342800273|gb|EGU35813.1| tRNA modification GTPase TrmE [Vibrio ichthyoenteri ATCC 700023]
Length = 453
Score = 350 bits (899), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 200/469 (42%), Positives = 282/469 (60%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG + V KT L+PR+A Y F + N +D+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGPLAEKVALEVAGKT---LRPRYAEYLPFCDEAGNQLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF PHS+TGEDV+EL GHGGP+++ ML+ L+I G+R A PGEF++RAFLN+K
Sbjct: 63 ALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILKID---GIRTARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AAKSA+ SL G FS+ IN L+D LI LR +E + DFPEE
Sbjct: 120 LDLAQAEAIADLIDASSEEAAKSALQSLQGAFSQRINTLVDSLIYLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + Q+ + +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LADGKVSADLQAIIDNLAAVRQEANQGSIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG +++ +EVEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVEKIGIERAWDE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQKNINYKNN 363
+K +D ++++ D TD K+I +F P +I + + NK D +G I + N
Sbjct: 292 IKQADRVLFMVDGTTTDATD-PKEIWPDFVDRLPDSIGMTVIRNKADQTGEDLGICHVNM 350
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA G++ LR+ L + + E ++AR RH+ +L +A +L I
Sbjct: 351 PTLIRLSAKTGEGVDALRSHLKECMGFAGGHEGG-FMARRRHLEALEKAANHLD-----I 404
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 405 GQEQLEGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|339496290|ref|YP_004716583.1| tRNA modification GTPase TrmE [Pseudomonas stutzeri ATCC 17588 =
LMG 11199]
gi|338803662|gb|AEJ07494.1| tRNA modification GTPase TrmE [Pseudomonas stutzeri ATCC 17588 =
LMG 11199]
Length = 455
Score = 350 bits (899), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 189/476 (39%), Positives = 281/476 (59%), Gaps = 25/476 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M+ I +AT PGRGGVGI+R+SG +I + + ++ PR A Y F +
Sbjct: 1 MIPARDTIAAVATAPGRGGVGIVRVSGPRARAIAITL---SGREPTPRHAHYGPFHADDG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+ID+GL+++F PHS+TGEDV+ELHGHGGP++L MLL C+E+G +RLA PGEF++
Sbjct: 58 EVIDEGLLLFFPGPHSFTGEDVLELHGHGGPVVLDMLLQRCVELG----VRLARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G+FS+ ++ L ++LI LR +E +
Sbjct: 114 RAFLNDKLDLAQAEAIADLIEASSAQAARNAVRSLKGEFSRRVHQLTERLIQLRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + + + + +L ++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDFLADGH-VLAQLDGVRTELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D ++VE+IG
Sbjct: 233 LNALAGREAAIVTDIAGTTRDVLREHILIDGMPLHVVDTAGLRDTE-------DQVERIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
++R + +D I+ V DA + +D + + P V + NK D +G
Sbjct: 286 VQRALSAIGEADRILLVVDASAPEASDPSALWPEFLDFSPEPGKVTLIRNKADLTGEAIV 345
Query: 358 INYKNN-IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYL 416
+ N+ A + L A G+ LLR L + QT ESS + AR RH+ +L A+ +L
Sbjct: 346 LRCDNDGQATLSLCARSGEGLELLREHLKHCMGYEQTAESS-FSARRRHLDALRLADEHL 404
Query: 417 SCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 405 RH-----GHDQLTLAGAGELLAEDLRLAQQALGEITGAFSSDDLLGRIFSSFCIGK 455
>gi|119900277|ref|YP_935490.1| tRNA modification GTPase TrmE [Azoarcus sp. BH72]
gi|205829056|sp|A1KCP8.1|MNME_AZOSB RecName: Full=tRNA modification GTPase MnmE
gi|119672690|emb|CAL96604.1| probable tRNA modification GTPase [Azoarcus sp. BH72]
Length = 452
Score = 350 bits (899), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 200/465 (43%), Positives = 281/465 (60%), Gaps = 24/465 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT PGRGG+G++R+SG L + +C + + +PR AT + F + ID+G+
Sbjct: 12 IAAIATAPGRGGIGVVRVSGAGLTGFAQQLCGR---EPQPRLATLARFRDADGATIDEGI 68
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++YF AP S+TGEDV+EL GHGGP+++ MLL+ CL ++G RLA PGEFT+RAFLN K
Sbjct: 69 LLYFPAPASFTGEDVLELQGHGGPVVMQMLLARCL----ALGARLAEPGEFTRRAFLNGK 124
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EA+ DLI AST +AA+SA+ SLSG+FS+ + + D LI+LR L+E + DFPEE
Sbjct: 125 LDLAQAEAVADLIEASTAAAARSALRSLSGQFSEEVLRIRDALIDLRMLVEATIDFPEEE 184
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
E L+K L I+ +L ++ + ++ AL+R G+NVVL+G+PNVGKSSL N L G
Sbjct: 185 VEF-LDKGRALPRLAAIRTQLDALLDRARQGALLRTGMNVVLVGRPNVGKSSLLNQLAGE 243
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
D AIVT +AGTTRD + + IQI + DTAG +++ + VE+IGIERTW E
Sbjct: 244 DRAIVTDVAGTTRDALREAIQIEGIPLHVIDTAG-------LRQTSDVVERIGIERTWRE 296
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANI 367
++ +D+++ V D+ + + ++ P I V NKID G +
Sbjct: 297 VERADVVLRVIDSEGAEEDALEAELAARCPSAAARITVVNKIDLLGLAPERTETAGAVRL 356
Query: 368 YLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSE 427
LSA G++LLR LL E LARERH+ +L EA +L+ A + E
Sbjct: 357 RLSARSGDGVDLLRTELLRAAGWHAHGEDV-VLARERHLLALREALDHLAAAEAAASALE 415
Query: 428 KNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
AE+LR E L+ I G+ + +DLL IFS+FCIGK
Sbjct: 416 L--------FAEELRLAQEALAGITGEFSADDLLGEIFSRFCIGK 452
>gi|90194070|gb|ABD92596.1| ThdF [Gallibacterium anatis DSM 16844 = F 149]
Length = 436
Score = 350 bits (899), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 194/456 (42%), Positives = 281/456 (61%), Gaps = 23/456 (5%)
Query: 13 TPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFK 72
TPPGRGGVGI+R+SG + + V KT LKPRFA Y F + +++D+G+ ++FK
Sbjct: 1 TPPGRGGVGILRVSGPLSEQVAKEVLGKT---LKPRFANYLPFKDIDGSVLDQGIALFFK 57
Query: 73 APHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQ 132
AP+S+TGEDV+EL GHGG +IL +LL L+I G+RLA PGEF+++AFLN+K+DL Q
Sbjct: 58 APNSFTGEDVLELQGHGGQVILDLLLKRILQIK---GIRLARPGEFSEQAFLNDKIDLAQ 114
Query: 133 VEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELIL 192
EAI DLI+AS+E AA+SA+ SL G+FS ++ L+D+LI LRT +E + DFP+E + L
Sbjct: 115 AEAIADLIDASSEQAARSALKSLQGEFSTKVHQLVDELIYLRTYVEAAIDFPDEEIDF-L 173
Query: 193 NKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIV 252
L +I K+ ++ Q K+ +L+R G+ VV+ G+PN GKSSL N+L G D AIV
Sbjct: 174 ADGKIEAHLNQIIAKVAEVQSQAKQGSLLREGMKVVIAGRPNAGKSSLLNALSGRDAAIV 233
Query: 253 TSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSD 312
T +AGTTRD + + I ++ I DTAG ++ +EVE+IGIER W E+ +D
Sbjct: 234 TDVAGTTRDVLREHIHLDGMPLHIIDTAG-------LRTATDEVERIGIERAWQEIDQAD 286
Query: 313 IIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYL 369
++++ D+ T +K + + P +IPV + NK D S + I +N I L
Sbjct: 287 RVLFMLDSTTTDETLPEKIWPEFMSRLPPSIPVTIIRNKADISSETEGIRTENGYTTITL 346
Query: 370 SASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEKN 429
SA + GI LL+ L + I QT+ +LAR RH+ +L +A +L + Q
Sbjct: 347 SAKTQQGIQLLKAHLKESI-GYQTVTEGGFLARRRHLEALEQAAQHLQQGHIQLTQFYAG 405
Query: 430 FEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+L+ LS I G+ T++DLL NIF
Sbjct: 406 -----ELLAEELKMAQNALSEITGQFTSDDLLGNIF 436
>gi|419955892|ref|ZP_14472012.1| tRNA modification GTPase TrmE [Pseudomonas stutzeri TS44]
gi|387967312|gb|EIK51617.1| tRNA modification GTPase TrmE [Pseudomonas stutzeri TS44]
Length = 455
Score = 350 bits (899), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 190/477 (39%), Positives = 283/477 (59%), Gaps = 27/477 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M T I +AT PGRGGVGI+R+SG ++ + + ++ PR A Y F +
Sbjct: 1 MSTVRDTIAAVATAPGRGGVGIVRVSGPRARALAITL---SGREPTPRHAHYGLFHANDG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+ID+GL+++F PHS+TGEDV+EL GHGGP++L +LL C+E+G RLA PGEF++
Sbjct: 58 EVIDEGLLLFFPGPHSFTGEDVLELQGHGGPVVLDVLLQCCVELGA----RLARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G+FS+ ++ L ++LI LR +E +
Sbjct: 114 RAFLNDKLDLAQAEAIADLIEASSAQAARNAVRSLQGEFSRRVHQLTERLIQLRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + + + + L ++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDFLADGH-VLQLLEGVRGELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + ++VE+IG
Sbjct: 233 LNALAGREAAIVTDIAGTTRDVLREHILIDGMPLHVLDTAGLRDTD-------DQVERIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
+ER + ++D ++ V DA + D + + + P V + NK D +G
Sbjct: 286 VERALAAIDSADRVLLVVDASAAEADDPLALWPEFLDSRPQPDKVTLIRNKADLTGEAVV 345
Query: 358 INYKNNIANIYLSASKRI--GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYY 415
+ + ++ LS S R GI+LLR L + QT ESS + AR RH+ +L A Y
Sbjct: 346 LQQAAD-GHVTLSLSARAGEGIDLLREHLKHCMGYEQTAESS-FSARRRHLDALRLAEQY 403
Query: 416 LSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L + Q+ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 404 LQHGHAQLTQAGAG-----ELLAEDLRLAQQALGEITGAFSSDDLLGRIFSSFCIGK 455
>gi|238759577|ref|ZP_04620739.1| tRNA modification GTPase mnmE [Yersinia aldovae ATCC 35236]
gi|238702236|gb|EEP94791.1| tRNA modification GTPase mnmE [Yersinia aldovae ATCC 35236]
Length = 454
Score = 350 bits (899), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 191/474 (40%), Positives = 285/474 (60%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ I+ ATPPGRGGVGI+R+SG+ ++ + V K K PR+A Y F + +
Sbjct: 1 MSTTDTIVAQATPPGRGGVGILRVSGRAAATVAQAVLGKLPK---PRYADYLPFKDVDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ +YF P+S+TGEDV+EL GHGGP+IL +LL L + + LR+A PGEF++R
Sbjct: 58 TLDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPE---LRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS I+ L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSVRIHQLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + +L ++ + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEGQLNGVMAELEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREAGDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D T+ + + P +P+ V NK D +G +
Sbjct: 287 ERAWNEIEQADRVLFMVDGTTTDATEPAAIWPEFMARLPATLPITVVRNKADITGETLGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N + I LSA GI+LLRN L + T E +LAR RH+ +L A +L
Sbjct: 347 TEVNGHSLIRLSARTGEGIDLLRNHLKLSMGFTSNTEGG-FLARSRHLQALEAAAQHLVQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + + EL+AE+LR + LS I G+ +++DLL IFS FCIGK
Sbjct: 406 GHEQLVSAYAG-----ELLAEELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454
>gi|418514358|ref|ZP_13080565.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
gi|366079379|gb|EHN43365.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
Length = 454
Score = 350 bits (899), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 281/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F + +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKLPK---PRYADYLPFKDVDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + + +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNGVIADLDAVRTEAHQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D I P N+P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + + LSA G+++LRN L + +E +LAR RH+ +L EA +L
Sbjct: 347 SEVNGHSLVRLSARTGEGVDVLRNHLKQSMGFETNMEGG-FLARRRHLQALAEAAEHLEQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|190150819|ref|YP_001969344.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|307264169|ref|ZP_07545762.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|189915950|gb|ACE62202.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|306870489|gb|EFN02240.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 452
Score = 350 bits (899), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 198/478 (41%), Positives = 291/478 (60%), Gaps = 43/478 (8%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKT-KKQLKPRFATYSSFFCKNNNIIDKG 66
I+ ATP GRGGV I+R+SG + + V K+ K+LKPR A Y F ++ ++D+G
Sbjct: 5 IVAQATPIGRGGVSILRISG----PLAQEVAKEVLGKELKPRLANYLPFKDQDGTVLDQG 60
Query: 67 LVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNN 126
+ ++FKAP+S+TGEDV+EL GHGG +IL +LL L+I G+R+A GEF+++AFLN+
Sbjct: 61 IALFFKAPNSFTGEDVLELQGHGGQVILDILLKRILKIK---GIRIARAGEFSEQAFLND 117
Query: 127 KLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEE 186
KLDL Q EAI DLI+A++E AA+SA+ SL G+FS IN L+D +I LRT +E + DFP+E
Sbjct: 118 KLDLAQAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDE 177
Query: 187 NQELILNK------NDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
+ + + ND +L ++K + K+ A++R G+ VV+ G+PN GKSSL
Sbjct: 178 EIDFLADGKIEGHLNDIIRQLNGVRK-------EAKQGAILREGMKVVIAGRPNAGKSSL 230
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT+IAGTTRD + + I I+ I DTAG +++ +EVEKIG
Sbjct: 231 LNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVEKIG 283
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKK---IIKNFPMNIPVIYVWNKIDYSGHQKN 357
I+R W E++ +D ++ + D+ F + + P NIPV + NK+D SG +
Sbjct: 284 IQRAWDEIEQADHVLLMIDSTEQTAEAFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEG 343
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP---YLARERHIHSLNEANY 414
+ + I LSA ++G++LLR L +K+ +SS +LAR RH+ +L A
Sbjct: 344 LQELDGFTLIRLSAQTKVGVDLLREHL----KKSMGYQSSTEGGFLARRRHLQALETAAE 399
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L + Q EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 400 HLERGHIQLTQFFAG-----ELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 452
>gi|271502718|ref|YP_003335744.1| tRNA modification GTPase TrmE [Dickeya dadantii Ech586]
gi|270346273|gb|ACZ79038.1| tRNA modification GTPase TrmE [Dickeya dadantii Ech586]
Length = 454
Score = 350 bits (899), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 188/474 (39%), Positives = 283/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ I+ ATPPGRGGVGI+R+SG+ ++ + V K K PR+A Y F + +
Sbjct: 1 MSHTDTIVAQATPPGRGGVGILRISGRQASAVAQAVLGKLPK---PRYADYLPFHDVDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL + + G+R+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRVVAL---PGVRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS ++ L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSAVNSLQGVFSSRVHQLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAMLNAVIGDLEGVRGEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G D AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGRDAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D + + + P +P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVEPAAIWPEFMARLPSRLPITVVRNKADVTGEPLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N + I LSA G++LLR+ L + T E +LAR RH+ +L +A +L
Sbjct: 347 EEVNTYSLIRLSARTGDGVDLLRDHLKQSMGFTSNTEGG-FLARRRHLQALEQAAQHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GHEQLVGAYAG-----ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|32034848|ref|ZP_00134954.1| COG0486: Predicted GTPase [Actinobacillus pleuropneumoniae serovar
1 str. 4074]
gi|126208954|ref|YP_001054179.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|166200465|sp|A3N2D8.1|MNME_ACTP2 RecName: Full=tRNA modification GTPase MnmE
gi|126097746|gb|ABN74574.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
Length = 452
Score = 350 bits (899), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 198/478 (41%), Positives = 291/478 (60%), Gaps = 43/478 (8%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKT-KKQLKPRFATYSSFFCKNNNIIDKG 66
I+ ATP GRGGVGI+R+SG + + V K+ K+LKPR A Y F ++ ++D+G
Sbjct: 5 IVAQATPIGRGGVGILRISG----PLAQEVAKEVLGKELKPRLANYLPFKDQDGTVLDQG 60
Query: 67 LVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNN 126
+ ++FKAP+S+TGEDV+EL GHGG +IL +LL L I G+R+A GEF+++AFLN+
Sbjct: 61 IALFFKAPNSFTGEDVLELQGHGGQVILDILLKRILTIK---GIRIARAGEFSEQAFLND 117
Query: 127 KLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEE 186
KLDL Q EAI DLI+A++E AA+SA+ SL G+FS IN L+D +I LRT +E + DFP+E
Sbjct: 118 KLDLAQAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDE 177
Query: 187 NQELILNK------NDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
+ + + ND +L ++K + K+ A++R G+ VV+ G+PN GKSSL
Sbjct: 178 EIDFLADGKIEGHLNDTIRQLNGVRK-------EAKQGAILREGMKVVIAGRPNAGKSSL 230
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT+IAGTTRD + + I I+ I DTAG +++ +EVEKIG
Sbjct: 231 LNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVEKIG 283
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKK---IIKNFPMNIPVIYVWNKIDYSGHQKN 357
I+R W E++ +D ++ + D+ F + + P +IPV + NK+D SG +
Sbjct: 284 IQRAWDEIEQADHVLLMIDSTEQTAEAFKTEWADFLAKLPQSIPVTVIRNKVDLSGEAEG 343
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP---YLARERHIHSLNEANY 414
+ + I LSA ++G++LLR L +K+ +SS +LAR RH+ +L A
Sbjct: 344 LQELDGFTLIRLSAQTKVGVDLLREHL----KKSMGYQSSTEGGFLARRRHLQALETAAE 399
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L + Q EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 400 HLERGHIQLTQFFAG-----ELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 452
>gi|372272373|ref|ZP_09508421.1| tRNA modification GTPase TrmE [Marinobacterium stanieri S30]
Length = 455
Score = 350 bits (898), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 191/473 (40%), Positives = 279/473 (58%), Gaps = 24/473 (5%)
Query: 3 TKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNI 62
T+ I ATPPGRGGVGIIRLSG + ++ E + T K PR A Y+ F ++
Sbjct: 4 TQQDTIAAQATPPGRGGVGIIRLSGPDALTLAEQLLGFTPK---PRHAHYTPFLGEDGEE 60
Query: 63 IDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRA 122
+D+G+ +YF PHS+TGEDV+EL GHGGP+I+ +LL +++G RLA PGEF++RA
Sbjct: 61 LDQGIALYFPNPHSFTGEDVVELQGHGGPVIIDLLLQRVIKLGA----RLARPGEFSERA 116
Query: 123 FLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFD 182
FLN+KLDL Q EAI DLI++S+E AA+ A+ SL G FS+ ++ L++ LI LR +E + D
Sbjct: 117 FLNDKLDLAQAEAIADLIDSSSEQAARCALRSLQGAFSERVHALVESLIQLRIYVEAAID 176
Query: 183 FPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFN 242
FPEE + + + N+L +I L + Q+ ++ +L+R G+NVV+ G+PN GKSSL N
Sbjct: 177 FPEEEIDFLADGK-VQNDLDQIMNHLQTVRQEARQGSLLREGMNVVIAGRPNAGKSSLLN 235
Query: 243 SLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302
+L G + AIVT I GTTRD + + I I+ I DTAG+ D + VE+IGI+
Sbjct: 236 ALAGRETAIVTDIEGTTRDVLREHIHIDGMPLHIIDTAGLRDAP-------DAVERIGID 288
Query: 303 RTWVELKNSDIIIYVQDARYDKHT---DFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNIN 359
R W E++ +D I+ + D+ T + ++ + V + NK D +G +
Sbjct: 289 RAWEEIRKADRILMMVDSTQSATTNPAELWPELADHLDDFSHVTLIRNKADLTGESIGLE 348
Query: 360 YKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCA 419
+ I LSA G++ LR L +++ + T E ++AR RHI +L A L
Sbjct: 349 QQGEYTLIRLSAKGGDGVDQLRQHLKEVMGFSSTTEGG-FMARRRHIDALERARELLETG 407
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AEDLR + LS I G+ T++DLL IFS FCIGK
Sbjct: 408 SEQLQMHGAG-----ELLAEDLRQAQQVLSEITGEFTSDDLLGRIFSSFCIGK 455
>gi|398841314|ref|ZP_10598537.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM102]
gi|398900889|ref|ZP_10649876.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM50]
gi|398108822|gb|EJL98771.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM102]
gi|398180718|gb|EJM68296.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM50]
Length = 456
Score = 350 bits (898), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 193/479 (40%), Positives = 283/479 (59%), Gaps = 30/479 (6%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKK-TKKQLKPRFATYSSFFCKN 59
M I +AT GRGGVGI+R+SG + + K + ++LKPRFA Y F N
Sbjct: 1 MSVPRETIAAVATAQGRGGVGIVRISGP----LASVAAKAISGRELKPRFAHYGPFLSAN 56
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFT 119
++D+G+ +YF P+S+TGEDV+EL GHGGPI+L MLL CLE+G RLA PGEF+
Sbjct: 57 EEVLDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLKRCLELG----CRLARPGEFS 112
Query: 120 KRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEF 179
+RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G FS+ ++ L ++LI LR +E
Sbjct: 113 ERAFLNDKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVHNLTEQLIGLRIYVEA 172
Query: 180 SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
+ DFPEE + + + + + L K++ +L ++++ + AL+R+G+ VV+ G+PN GKSS
Sbjct: 173 AIDFPEEEIDFLADGH-VLSMLDKVRDELSTVLREAGQGALLRDGMTVVIAGRPNAGKSS 231
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + ++VEKI
Sbjct: 232 LLNALAGREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTD-------DQVEKI 284
Query: 300 GIERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356
G+ER + +D ++ V DA + D + ++ P V + NK D +G
Sbjct: 285 GVERALKAIGEADRVLLVVDATAPEALDPFALWPEFLETRPDPAKVTLIRNKADLTGEAI 344
Query: 357 NINYKNNIANIYLSASKRI---GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEAN 413
+ N+ ++ +S S R G+ LLR L + QT ESS + AR RH+ +L A+
Sbjct: 345 ALEVSND-GHVTISLSARSAGEGLELLREHLKACMGYEQTSESS-FSARRRHLEALRHAS 402
Query: 414 YYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L +++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 403 ASLEH-----GRAQLTLAGAGELLAEDLRQAQQSLGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|171464336|ref|YP_001798449.1| tRNA modification GTPase TrmE [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|171193874|gb|ACB44835.1| tRNA modification GTPase TrmE [Polynucleobacter necessarius subsp.
necessarius STIR1]
Length = 454
Score = 350 bits (898), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 198/477 (41%), Positives = 287/477 (60%), Gaps = 28/477 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M+T+ PII IAT PG+ GVG++R+SG+NL +++ +K+L PR A + ++
Sbjct: 1 MMTRKLPIIAIATAPGKAGVGVVRISGQNL---IDLTTALFQKKLSPRQANLLTLSDEHG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID+ + IYF P S+TGEDV+EL HGGP +L +++ CLE+GK+ GL +A PGEFT
Sbjct: 58 QTIDQLIAIYFAGPASFTGEDVLELQCHGGPQLLELVMKRCLELGKNEGLVIAEPGEFTL 117
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RA+LNNK+DL Q EAI DLI+A +E+A + A SL G FS IN L++++ LR L+E +
Sbjct: 118 RAYLNNKIDLAQAEAIADLIDAQSEAAVRGAACSLQGAFSDDINNLIEEITQLRILVEST 177
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE E + N L+ +K+KL + K+ ++R+G+ +VL G PNVGKSSL
Sbjct: 178 LDFPEEEIEFLENAQ-ARQRLVTVKEKLHTLRAGAKQGKILRDGVQLVLAGAPNVGKSSL 236
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N LVG +VAIVT IAGTTRD++ ++I I+ I DTAG +++ + VE G
Sbjct: 237 INRLVGEEVAIVTPIAGTTRDRVRESITIDGVPMHIMDTAG-------LRETADLVEAKG 289
Query: 301 IERTWVELKNSDIIIYVQDARYD-KHTDFDKKIIKNFPMNIPVIYVWNKID-YSGHQKNI 358
IER+W ++ +D++I++ DA+ + D +I+K P V+ V NK D S H K+
Sbjct: 290 IERSWDSIRLADLVIFLTDAQSGAQKDDLKTQILKELPSKCAVLEVVNKADLLSDHSKS- 348
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ + +SA GI LL+ +L L+ + E + LAR RH+ + A +
Sbjct: 349 ---PSTGALLISAKTGAGIELLKQKILALVGWSGPQEGA-ILARRRHLDCIERAAEH--- 401
Query: 419 AIKIINQSE---KNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
I +SE N +LEL AE+L + L I GK +DLL IFSQFCIGK
Sbjct: 402 ----IERSEYFAANGNNSLELFAEELSLAQKHLGEITGKLLPDDLLGKIFSQFCIGK 454
>gi|395235786|ref|ZP_10413989.1| tRNA modification GTPase TrmE [Enterobacter sp. Ag1]
gi|394729540|gb|EJF29514.1| tRNA modification GTPase TrmE [Enterobacter sp. Ag1]
Length = 454
Score = 350 bits (898), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 190/474 (40%), Positives = 283/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ + II ATPPGRGGVGI+R+SG+ + E V K K PR+A Y F + +
Sbjct: 1 MSNHDTIIAQATPPGRGGVGILRISGRQAREVAEAVLGKLPK---PRYADYLPFRDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILAL---PGLRIANPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS IN L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARINHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLHRVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D I P +P+ V NK D +G +
Sbjct: 287 ERAWKEIEQADRVLFMVDGTTTDAVDPAAIWPDFIARLPERLPITVVRNKADVTGETLGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + + LSA G+++LR L + + +E +LAR RH+ +L +A +L
Sbjct: 347 SEVNGHSLVRLSARTGEGVDVLRAHLKESMGFETNMEGG-FLARRRHLQALEQAAEHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ +++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQNLSEITGEFSSDDLLGRIFSSFCIGK 454
>gi|315128182|ref|YP_004070185.1| tRNA modification GTPase TrmE [Pseudoalteromonas sp. SM9913]
gi|315016696|gb|ADT70034.1| tRNA modification GTPase TrmE [Pseudoalteromonas sp. SM9913]
Length = 454
Score = 350 bits (898), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 196/465 (42%), Positives = 278/465 (59%), Gaps = 25/465 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
AT PGRGGVGIIR+SG + E + K K RFA Y F + +D+G+ IYF
Sbjct: 11 ATAPGRGGVGIIRVSGSLAKQVAEKIVGKIPK---VRFADYVPFNNLAGDQLDQGIAIYF 67
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
PHS+TGEDV+EL GHGGP++L MLL EI K G+RLA PGEF++RAF+N+KLDL
Sbjct: 68 AGPHSFTGEDVLELQGHGGPVVLDMLLK---EISKIDGVRLAKPGEFSERAFMNDKLDLT 124
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLINA++E AAKSA+ SL G+FSK I L++K+I+LR +E + DFP+E +
Sbjct: 125 QAEAIADLINATSEQAAKSALQSLQGQFSKHIETLVEKVIHLRMYVEAAIDFPDEEIDF- 183
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L I ++L + Q K+ +++R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 184 LSDGKVGGDLNAIIEQLNAVTNQAKQGSIMREGMRVVIAGRPNAGKSSLLNALAGREAAI 243
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG ++++ + VE+IGIER W E+ +
Sbjct: 244 VTEIAGTTRDVLREHIHIDGMPLHIIDTAG-------LRESPDRVEQIGIERAWDEINQA 296
Query: 312 DIIIYVQD----ARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANI 367
D ++++ D A D H + + + P + V + NK D SG ++ + I
Sbjct: 297 DRVLFMLDGTDTADTDPHAIW-PEFMAKLPQGMGVTVIRNKADLSGDVVGMDQEQQYPVI 355
Query: 368 YLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSE 427
LSA GI L+R L I E ++AR RH+ +L A Y+L +++
Sbjct: 356 SLSAKNADGIELVREHLKACIGFDGATEGG-FMARRRHLDALEHAAYHLDT-----GKTQ 409
Query: 428 KNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
E++AE+LR + L+ I G+ T++DLL IFS FCIGK
Sbjct: 410 LEMHVAGEILAEELRLTQQYLNEITGEFTSDDLLGKIFSSFCIGK 454
>gi|262273126|ref|ZP_06050943.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Grimontia hollisae
CIP 101886]
gi|262222882|gb|EEY74190.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Grimontia hollisae
CIP 101886]
Length = 454
Score = 350 bits (898), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 283/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
+T + I+ ATPPGRGGVGIIR+SG ++ + V T + L R A Y F N
Sbjct: 1 MTHSDTIVAQATPPGRGGVGIIRVSGPKAKAVAKAV---TGRDLPVRRAEYLPFKDAEGN 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ +YF+AP+S+TGEDV+EL GHGGP+I+ ML+ +EI G+R A PGEF++R
Sbjct: 58 ALDQGIALYFQAPNSFTGEDVLELQGHGGPVIMDMLIKRIVEID---GVRTARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AAKSA+ SL G FS +N L++ LI+LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAAKSALQSLQGAFSSKVNALVEALIHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L I L ++ + + A++R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKVAGDLNNIITSLDEVRKAANQGAIMREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E+ +D ++++ D T ++ + I P N+ + + NK D +G I
Sbjct: 287 ERAWDEIAQADRVLFMVDGTTTDATSPEEIWPEFIDRLPSNMGMTVIRNKADITGETLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ + I LSA G++ LR L + + E ++AR RH+ +L+ A +L
Sbjct: 347 CHASQPTLIRLSAKTGAGVDALREHLKACMGFSGAAEGG-FMARRRHLEALDAAARHLE- 404
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
I + + E++AE+LR + LS I G+ +++DLL IFS FCIGK
Sbjct: 405 ----IGKDQLEGYMAGEILAEELRIAQQHLSEITGEFSSDDLLGRIFSSFCIGK 454
>gi|407794079|ref|ZP_11141108.1| tRNA modification GTPase TrmE [Idiomarina xiamenensis 10-D-4]
gi|407213503|gb|EKE83359.1| tRNA modification GTPase TrmE [Idiomarina xiamenensis 10-D-4]
Length = 456
Score = 350 bits (898), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 189/475 (39%), Positives = 284/475 (59%), Gaps = 27/475 (5%)
Query: 3 TKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNI 62
+ N I+ ATPPGRGGVGI+R+SG + E + K PR+A Y F +
Sbjct: 4 SSNDSIVAQATPPGRGGVGIVRVSGDAARQVAEALLGHCPK---PRYAEYLPFRDSQGQL 60
Query: 63 IDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRA 122
+D+G+ ++F P+S+TGEDV+EL GHGGP+++ M++ + L I +RLA PGEF++RA
Sbjct: 61 LDEGIALFFPGPNSFTGEDVLELQGHGGPVLIDMIIKAALAIPS---VRLAKPGEFSERA 117
Query: 123 FLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFD 182
F+N+KLDL Q EAI DLI+ ++E AA++A+ SL G+FS I+ L+D +I LR +E + D
Sbjct: 118 FMNDKLDLTQAEAIADLIDTTSEQAARAALQSLKGEFSYKIDQLVDAVIQLRMYVEAAID 177
Query: 183 FPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFN 242
FP+E + L+ ++L I +L +I Q ++ L+R+G+ VV+ G+PN GKSSL N
Sbjct: 178 FPDEEIDF-LSDGKVASDLDAIIDQLHEIDLQARQGTLMRDGMRVVIAGRPNAGKSSLLN 236
Query: 243 SLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302
+L G + AIVT+IAGTTRD + + IQI I DTAG+ D + +EVE+IGI
Sbjct: 237 ALAGRESAIVTAIAGTTRDVLREHIQIEGMPLHIIDTAGLRD-------SPDEVEQIGIA 289
Query: 303 RTWVELKNSDIIIYV---QDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNIN 359
R W E++ +D ++ V D R D + ++ P +IP+ + NK D S ++
Sbjct: 290 RAWDEIRQADRVLMVVDSHDTRATHPHDIWPEFVERLPDDIPITVIRNKADLSEEPVVMD 349
Query: 360 YKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCA 419
+ + ++LSA GI+LLR L + T E ++AR RH+ +L A +L
Sbjct: 350 SVSGVPVLHLSAKTGRGIDLLREHLKHCVGYQGTTEGG-FMARRRHLDALARARQHLL-- 406
Query: 420 IKIINQSEKNFEKNL--ELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q ++ NL EL+AE+LR + L+ I G+ T++DLL IF FCIGK
Sbjct: 407 -----QGQEQLTLNLAGELLAEELRLTQQHLNEITGEFTSDDLLGKIFGSFCIGK 456
>gi|407789814|ref|ZP_11136913.1| tRNA modification GTPase TrmE [Gallaecimonas xiamenensis 3-C-1]
gi|407206021|gb|EKE75984.1| tRNA modification GTPase TrmE [Gallaecimonas xiamenensis 3-C-1]
Length = 448
Score = 350 bits (898), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 192/468 (41%), Positives = 282/468 (60%), Gaps = 27/468 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT GRGGVGIIR+SG ++ + + K R+A Y +F ++ ++D+G+
Sbjct: 5 IAAIATATGRGGVGIIRVSGPQAAAVAQ---ARLGTLPKARYAHYGNFLDQDGTVLDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P+S+TGEDV+EL GHGGP+IL MLL + L + GLRLA PGEF++RAFLN+K
Sbjct: 62 ALYFPGPNSFTGEDVLELQGHGGPVILDMLLKAVLSV---PGLRLARPGEFSERAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+E AA+SA+ SL G FS+ I L++ LI+LR +E + DFPEE
Sbjct: 119 LDLAQAEAIADLIEASSEQAARSAVHSLQGDFSRRIQGLVESLIHLRIYVEAAIDFPEEE 178
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L I+ +L + ++ +L+R+G+ VV+ G+PN GKSSL N+L G
Sbjct: 179 IDF-LSDGKVAGDLAGIRAELAAVKASARQGSLLRDGMRVVIAGRPNAGKSSLLNALAGQ 237
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
++AIVT IAGTTRD + + I I+ I DTAG+ D + VEKIGIER W E
Sbjct: 238 ELAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDTG-------DAVEKIGIERAWAE 290
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
+ +D ++++ DA TD + P ++ + V NK++ +G + +++ I
Sbjct: 291 IDKADRVLFMVDALDTDATDPHAIWPDFVDRLPNSLGITVVRNKVELTG--ETPGFEDGI 348
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
+ LSA G+ LR+ L L+ E S +LAR RH+ +L+ A +L + ++
Sbjct: 349 --VRLSAKTGAGVEALRDHLKALMGFEGATEGS-FLARRRHLEALDSAEGHLDTGEEQLH 405
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
F E++AE+LR LS I G+ +++DLL IFS FCIGK
Sbjct: 406 ----GFAAG-EILAEELRLAQLALSEITGEFSSDDLLGRIFSSFCIGK 448
>gi|205354570|ref|YP_002228371.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|375125456|ref|ZP_09770620.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Gallinarum str. SG9]
gi|445131293|ref|ZP_21381692.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
gi|254811492|sp|B5RFY2.1|MNME_SALG2 RecName: Full=tRNA modification GTPase MnmE
gi|205274351|emb|CAR39376.1| thiophene and furan oxidation protein [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|326629706|gb|EGE36049.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Gallinarum str. SG9]
gi|444850497|gb|ELX75596.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
Length = 454
Score = 350 bits (898), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 281/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + + V K K PR A Y F + +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKLPK---PRHADYLPFKDVDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D I P N+P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + + LSA G+++LRN L + +E +LAR RH+ +L EA +L
Sbjct: 347 SEVNGHSLVRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALAEAAEHLEQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|292490141|ref|YP_003533036.1| tRNA modification GTPase trmE [Erwinia amylovora CFBP1430]
gi|428787130|ref|ZP_19004606.1| tRNA modification GTPase trmE [Erwinia amylovora ACW56400]
gi|291555583|emb|CBA24183.1| tRNA modification GTPase trmE [Erwinia amylovora CFBP1430]
gi|426274597|gb|EKV52339.1| tRNA modification GTPase trmE [Erwinia amylovora ACW56400]
Length = 474
Score = 350 bits (898), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 283/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
+ + I+ ATPPGRGGVGI+R+SG + +++ K K PR A Y F + +
Sbjct: 21 MNHSDTIVAQATPPGRGGVGILRVSGNKAARVAQLLLGKLPK---PRHADYLPFCDADGS 77
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F PHS+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 78 TLDQGIALWFPGPHSFTGEDVLELQGHGGPVILDLLLKRILSL---PGLRIANPGEFSER 134
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 135 AFLNDKLDLAQAEAIADLIDASSEQAARSAVNSLQGVFSTRVNHLVEALTHLRIYVEAAI 194
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 195 DFPDEEIDF-LSDGKIEAQLHQVIADLDAVRSEARQGSLLREGMKVVIAGRPNAGKSSLL 253
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + IQI+ I DTAG +++ +EVE+IGI
Sbjct: 254 NALAGREAAIVTDIAGTTRDVLREHIQIDGMPLHIIDTAG-------LREASDEVERIGI 306
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D TD + I P +PV V NK D +G + I
Sbjct: 307 ERAWHEIEQADHVLFMVDGTTTDATDPAEIWPDFIARLPETLPVTVVRNKADITGEIREI 366
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + I LSA GI LRN L + ++E +LAR RH+ +L A +L
Sbjct: 367 SEVNGHSLIRLSARTGEGIENLRNHLKLSMGWHGSMEGG-FLARRRHLQALELAATHLQQ 425
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ +++DLL IFS FCIGK
Sbjct: 426 GKHQLLAARAG-----ELLAEELRMAQQALSEITGEFSSDDLLGRIFSSFCIGK 474
>gi|293393716|ref|ZP_06638024.1| tRNA modification GTPase [Serratia odorifera DSM 4582]
gi|291423760|gb|EFE96981.1| tRNA modification GTPase [Serratia odorifera DSM 4582]
Length = 454
Score = 350 bits (898), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 189/474 (39%), Positives = 284/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ + I+ ATPPGRGGVGI+R+SG+ + + + K K PR A Y F +
Sbjct: 1 MSTSDTIVAQATPPGRGGVGILRISGRAAQQVAQTLLGKLPK---PRHADYLPFRDADGA 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++R
Sbjct: 58 TLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRVLAL---PGVRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SAM SL G FS I+ L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSAMNSLQGAFSSRIHQLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNGVMNDLDSVRVEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREAGDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D + T+ + + + P +P+ V NK D +G +
Sbjct: 287 ERAWNEIEQADRVLFMVDGTTTEATEPGEIWPEFMARLPATLPITVVRNKADITGEPLGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N + I LSA GI +LR+ L + T +E +LAR RH+ +L +A +L
Sbjct: 347 KEVNGHSLIRLSARTGQGIEVLRDHLKQSMGFTSNMEGG-FLARRRHLQALEQAAQHLVQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKEQLVSAYAG-----ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|260771040|ref|ZP_05879968.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio furnissii CIP
102972]
gi|375129463|ref|YP_004991559.1| tRNA modification GTPase trmE [Vibrio furnissii NCTC 11218]
gi|260613929|gb|EEX39120.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio furnissii CIP
102972]
gi|315178633|gb|ADT85547.1| tRNA modification GTPase trmE [Vibrio furnissii NCTC 11218]
Length = 453
Score = 350 bits (898), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 197/469 (42%), Positives = 282/469 (60%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG E+ T + LKPR+A Y F ++ +D+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGPK---ATEVALAVTGRTLKPRYAEYLPFKTESGVELDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F PHS+TGEDV+EL GHGGP+++ ML+ L I G+R A PGEF++RAFLN+K
Sbjct: 63 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILMI---PGVRPARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FSK I+ L++ LI+LR +E + DFPEE
Sbjct: 120 MDLTQAEAIADLIDASSEEAAKSALKSLQGQFSKRIHTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + Q+ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LADGKVSGDLQAIIDNLNAVRQEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG +++ +EVEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVEKIGIERAWDE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQKNINYKNN 363
+ +D ++++ D TD K I +F P ++ + + NK+D +G I + N
Sbjct: 292 IAQADRVLFMVDGTTTSATD-PKDIWPDFVDRLPDSMGMTVIRNKVDQTGETLGICHVNQ 350
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA G++ LR+ L + T E ++AR RH+ +L A +LS I
Sbjct: 351 PTLIRLSAKTGEGVDALRSHLKACMGFTGNQEGG-FMARRRHLDALERAAEHLS-----I 404
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 405 GQQQLEGYMAGEILAEELRLAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|326423790|ref|NP_759969.2| tRNA modification GTPase TrmE [Vibrio vulnificus CMCP6]
gi|319999155|gb|AAO09496.2| tRNA modification GTPase TrmE [Vibrio vulnificus CMCP6]
Length = 462
Score = 350 bits (898), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 195/469 (41%), Positives = 283/469 (60%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG ++ + T K LK R+A Y F ++ + +D+G+
Sbjct: 15 IVAQATAPGRGGVGIIRVSGPQ---AAQVALEVTGKTLKARYAEYLPFKAQDGSELDQGI 71
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F PHS+TGEDV+EL GHGGP+++ ML+ L I G+R A PGEF++RAFLN+K
Sbjct: 72 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILTIS---GVRPARPGEFSERAFLNDK 128
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FSK I+ L++ LI+LR +E + DFPEE
Sbjct: 129 MDLTQAEAIADLIDASSEEAAKSALQSLQGQFSKRIHTLVESLIHLRIYVEAAIDFPEEE 188
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 189 IDF-LADGKVAGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 247
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
D AIVT IAGTTRD + + I I+ I DTAG+ D + +EVEKIGIER W E
Sbjct: 248 DSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVEKIGIERAWDE 300
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQKNINYKNN 363
++ +D ++++ D TD K+I +F P I + + NK D + I + +
Sbjct: 301 IRQADRVLFMVDGTTTDATD-PKEIWPDFIDRLPEQIGITVIRNKADQTQESLGICHVSQ 359
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA G++ LRN L + + + E ++AR RH+ +L A +L +I
Sbjct: 360 PTLIRLSAKTGQGVDALRNHLKECMGFSGNSEGG-FMARRRHLDALQRAAEHL-----LI 413
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 414 GQEQLEGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 462
>gi|260774975|ref|ZP_05883875.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio
coralliilyticus ATCC BAA-450]
gi|260609065|gb|EEX35224.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio
coralliilyticus ATCC BAA-450]
Length = 453
Score = 350 bits (898), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 196/469 (41%), Positives = 283/469 (60%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG ++ + T K+L+PR+A Y SF ++ +D+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGP---LAAKVASEVTGKELRPRYAEYLSFTAQDGTQLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P+S+TGEDV+EL GHGGP+++ ML+ L+I G+R A PGEF++RAFLN+K
Sbjct: 63 ALYFPNPNSFTGEDVLELQGHGGPVVMDMLIKRILQI---PGIRTARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AAKSA+ SL G FS I L++ LI+LR +E + DFPEE
Sbjct: 120 LDLAQAEAIADLIDASSEQAAKSALKSLQGAFSNRIQTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LADGKVSADLQTIIDNLTAVRKEATQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + +EVEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVEKIGIERAWEE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQKNINYKNN 363
++ +D ++++ D TD K+I +F P NI + + NK+D + I + N+
Sbjct: 292 IEQADRVLFMVDGTTTDATD-PKEIWPDFVDRLPSNIGMTVIRNKVDQTDETLGICHVND 350
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA G+ LR L + + E ++AR RH+ +L +A +L I
Sbjct: 351 PTLIRLSARTGQGVESLRTHLKECMGFAGGHEGG-FMARRRHLEALEKAAEHLD-----I 404
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 405 GQQQLEGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|320157825|ref|YP_004190204.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio vulnificus
MO6-24/O]
gi|31340460|sp|Q8DDI1.1|MNME_VIBVU RecName: Full=tRNA modification GTPase MnmE
gi|319933137|gb|ADV88001.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio vulnificus
MO6-24/O]
Length = 453
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 195/469 (41%), Positives = 283/469 (60%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG ++ + T K LK R+A Y F ++ + +D+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGPQ---AAQVALEVTGKTLKARYAEYLPFKAQDGSELDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F PHS+TGEDV+EL GHGGP+++ ML+ L I G+R A PGEF++RAFLN+K
Sbjct: 63 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILTIS---GVRPARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FSK I+ L++ LI+LR +E + DFPEE
Sbjct: 120 MDLTQAEAIADLIDASSEEAAKSALQSLQGQFSKRIHTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LADGKVAGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
D AIVT IAGTTRD + + I I+ I DTAG+ D + +EVEKIGIER W E
Sbjct: 239 DSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVEKIGIERAWDE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQKNINYKNN 363
++ +D ++++ D TD K+I +F P I + + NK D + I + +
Sbjct: 292 IRQADRVLFMVDGTTTDATD-PKEIWPDFIDRLPEQIGITVIRNKADQTQESLGICHVSQ 350
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA G++ LRN L + + + E ++AR RH+ +L A +L +I
Sbjct: 351 PTLIRLSAKTGQGVDALRNHLKECMGFSGNSEGG-FMARRRHLDALQRAAEHL-----LI 404
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 405 GQEQLEGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|90023653|ref|YP_529480.1| tRNA modification GTPase TrmE [Saccharophagus degradans 2-40]
gi|123395362|sp|Q21DG1.1|MNME_SACD2 RecName: Full=tRNA modification GTPase MnmE
gi|89953253|gb|ABD83268.1| tRNA modification GTPase trmE [Saccharophagus degradans 2-40]
Length = 456
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 202/478 (42%), Positives = 281/478 (58%), Gaps = 37/478 (7%)
Query: 5 NSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIID 64
N I IAT PGRGGVGIIR+SG I + + T K PR+A Y F N +I+D
Sbjct: 6 NETIAAIATAPGRGGVGIIRVSGPKALPIAQHILGITPK---PRYAHYGDFCNANGDILD 62
Query: 65 KGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFL 124
+G+ +YF PHS+TGEDV+EL GHGGP+IL MLL + ++ G RLA PGEF++RAFL
Sbjct: 63 QGIALYFPNPHSFTGEDVLELQGHGGPVILDMLLDAVVQAGA----RLARPGEFSERAFL 118
Query: 125 NNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFP 184
N+KLDL Q EAI DLI AS++ AAK A+ SL G+FS I+ L+++LI+LR +E + DFP
Sbjct: 119 NDKLDLAQAEAIADLIEASSQQAAKQALNSLKGEFSNKIHELVEQLIHLRMYVESAIDFP 178
Query: 185 EENQELILNK--NDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFN 242
EE + + + N++I +L QQG AL+R+G+ VV+ G+PN GKSSL N
Sbjct: 179 EEEIDFLSDGIVEGKLNDVIDQTDAVLAQAQQG---ALLRDGMKVVIAGRPNAGKSSLLN 235
Query: 243 SLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302
+L D+AIVT+IAGTTRD + + I I+ I DTAG+ D + + VE+IGIE
Sbjct: 236 ALAEKDIAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLRD-------SPDHVEQIGIE 288
Query: 303 RTWVELKNSDIIIYVQDARYDKHTDFD---KKIIKNFPMNIPVIYVWNKIDYSG-----H 354
R W E++++D I+ + D + D + + N + ++NKID SG H
Sbjct: 289 RAWGEIESADRILLLIDTTDNSQLDVNVHWPEFTSNAAYAKKLTVIYNKIDESGFSTTNH 348
Query: 355 QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ Y+ + LSA G++ L+ L ++ T E + AR RHIH++ +A
Sbjct: 349 TSDAPYQ----TLPLSAKTGAGLDTLKAHLKSVMGFQSTTEGG-FSARRRHIHAIEQAQN 403
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
YL + + + EL+AEDLR LS I G T +DLL IFS FCIGK
Sbjct: 404 YL-----LTGREQLQLHTAGELLAEDLRAAQNHLSEITGAFTPDDLLGKIFSSFCIGK 456
>gi|398860586|ref|ZP_10616234.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM79]
gi|398234863|gb|EJN20724.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM79]
Length = 456
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 193/479 (40%), Positives = 283/479 (59%), Gaps = 30/479 (6%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKK-TKKQLKPRFATYSSFFCKN 59
M I +AT GRGGVGI+R+SG + + K + ++LKPRFA Y F N
Sbjct: 1 MSVPRETIAAVATAQGRGGVGIVRISGP----LASLAAKAISGRELKPRFAHYGPFLSAN 56
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFT 119
++D+G+ +YF P+S+TGEDV+EL GHGGPI+L MLL CLE+G RLA PGEF+
Sbjct: 57 EEVLDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLKRCLELG----CRLARPGEFS 112
Query: 120 KRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEF 179
+RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G FS+ ++ L ++LI LR +E
Sbjct: 113 ERAFLNDKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVHNLTEQLIGLRIYVEA 172
Query: 180 SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
+ DFPEE + + + + + L K++ +L ++++ + AL+R+G+ VV+ G+PN GKSS
Sbjct: 173 AIDFPEEEIDFLADGH-VLSMLDKVRDELSTVLREAGQGALLRDGMTVVIAGRPNAGKSS 231
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + ++VEKI
Sbjct: 232 LLNALAGREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTD-------DQVEKI 284
Query: 300 GIERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356
G+ER + +D ++ V DA + D + ++ P V + NK D +G
Sbjct: 285 GVERALKAIGEADRVLLVVDATAPEALDPFALWPEFLETRPDPAKVTLIRNKADLTGEAI 344
Query: 357 NINYKNNIANIYLSASKRI---GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEAN 413
+ N+ ++ +S S R G+ LLR L + QT ESS + AR RH+ +L A+
Sbjct: 345 ALEVSND-GHVTISLSARSAGEGLELLREHLKACMGYEQTSESS-FSARRRHLEALRHAS 402
Query: 414 YYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L +++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 403 ASLEH-----GRAQLTLAGAGELLAEDLRQAQQSLGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|375110092|ref|ZP_09756328.1| tRNA modification GTPase TrmE [Alishewanella jeotgali KCTC 22429]
gi|374569841|gb|EHR40988.1| tRNA modification GTPase TrmE [Alishewanella jeotgali KCTC 22429]
Length = 453
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 190/468 (40%), Positives = 284/468 (60%), Gaps = 24/468 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I +AT PGR GVGIIR+SG + ++ + K+ K PR+A Y FF + ++D+G+
Sbjct: 7 IAAVATAPGRAGVGIIRISGPDCKTVAAAILKRLPK---PRYAEYLPFFA-TDQVLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P+S+TGEDV+EL GHGGP++L MLL L+ + +R+A PGEF++RAFLN+K
Sbjct: 63 ALYFPGPNSFTGEDVLELQGHGGPVLLDMLLRQVLQ---TPNVRIARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AA+SAM SL G+FSK I+ L++K+I+LR +E + DFP+E
Sbjct: 120 LDLAQAEAIADLIDASSEQAARSAMQSLQGEFSKRIHQLVEKVIHLRMYVEAAIDFPDEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L +I L ++ +Q + +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LSDGKVAADLAEIIDDLAQVRKQATQGSILREGMKVVIAGRPNAGKSSLLNALAGR 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D ++VE+IGI R W E
Sbjct: 239 EAAIVTEIAGTTRDVLREHIHIDGMPLHIIDTAGLRDTE-------DQVEQIGIARAWQE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFD---KKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
+ +D ++++ D+ TD + I P + + + NK D +G + + +
Sbjct: 292 IAKADRVLFMVDSTTTADTDPHVIWPEFIDRLPPGLGITVIRNKADLTGESLQPDEQAAV 351
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
LSA GI+ LR L I + E S +LAR RH+ +LN A +L+ I
Sbjct: 352 PVYPLSAKTGAGIDALREHLKRCIGFDASTEGS-FLARRRHLDALNRAAEHLA-----IG 405
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 406 QEQLHSFIAGEILAEELRLSQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|209693636|ref|YP_002261564.1| tRNA modification GTPase TrmE [Aliivibrio salmonicida LFI1238]
gi|208007587|emb|CAQ77687.1| probable tRNA modification GTPase [Aliivibrio salmonicida LFI1238]
Length = 455
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 197/475 (41%), Positives = 281/475 (59%), Gaps = 23/475 (4%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M I+ AT PGRGGVGIIR+SG + V KT LKPR+A Y+ F N
Sbjct: 1 MTLHTDTIVAQATAPGRGGVGIIRVSGPKAQQVALEVVGKT---LKPRYAEYTPFKDDNG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+D+G+ +YF PHS+TGEDV+EL GHGGP+++ ML+ L+I G+R A PGEF++
Sbjct: 58 LELDQGIALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILKIE---GIRTARPGEFSE 114
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+K+DL Q EAI DLI+AS+E AAKSA+ SL G FS+ IN L++ LI LR +E +
Sbjct: 115 RAFLNDKMDLAQAEAIADLIDASSEEAAKSALNSLQGVFSRKINTLVESLIYLRIYVEAA 174
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + L +L I L + Q+ + A++R G+ VV+ G+PN GKSSL
Sbjct: 175 IDFPEEEIDF-LADGKVSGDLQGIIDNLNAVRQEANQGAIMREGMKVVIAGRPNAGKSSL 233
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G D AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IG
Sbjct: 234 LNALSGKDSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIG 286
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFD---KKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
IER W E+ +D ++++ D TD + + P N+ + + NK D +G
Sbjct: 287 IERAWQEIAQADRVLFMVDGTTTDATDPKVIWPEFLDRLPKNMGMTVIRNKADQTGENLG 346
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
I + N+ I LSA G++ LR L + + + E ++AR RH+ +L +A+ +L
Sbjct: 347 ICHVNDPTLIRLSAKTGEGVDALRLHLKECMGFSGNQEGG-FMARRRHLEALEKASEHLD 405
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
I Q + E++AE+LR + LS I G+ +++DLL IF+ FCIGK
Sbjct: 406 -----IGQQQLEGYMAGEILAEELRIAQQHLSEITGEFSSDDLLGRIFTSFCIGK 455
>gi|398926136|ref|ZP_10662297.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM48]
gi|398171173|gb|EJM59084.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM48]
Length = 456
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 195/478 (40%), Positives = 284/478 (59%), Gaps = 28/478 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKK-TKKQLKPRFATYSSFFCKN 59
M I +AT GRGGVGI+R+SG + + K + ++LKPRFA Y FF +N
Sbjct: 1 MSAPRETIAAVATAQGRGGVGIVRISGP----LASVAAKAFSGRELKPRFAHYGPFFSEN 56
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFT 119
+ ++D+GL +YF P+S+TGEDV+EL GHGGPI+L MLL LE+G RLA PGEF+
Sbjct: 57 DEVLDQGLALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRSLELG----CRLARPGEFS 112
Query: 120 KRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEF 179
+RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G FS ++ L ++LI LR +E
Sbjct: 113 ERAFLNDKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSSRVHNLTEQLIGLRIYVEA 172
Query: 180 SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
+ DFPEE + + + + + L K++ +L ++++ + AL+R+G+ VV+ G+PN GKSS
Sbjct: 173 AIDFPEEEIDFLADGH-VLSMLDKVRDELSTVMREAGQGALLRDGMTVVIAGRPNAGKSS 231
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + + VEKI
Sbjct: 232 LLNALAGREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTD-------DHVEKI 284
Query: 300 GIERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356
G+ER + +D ++ V DA + D + ++ P V + NK D +G
Sbjct: 285 GVERALKAIGEADRVLLVVDATAPEALDPFALWPEFLEIRPDPAKVTLIRNKADLTGEAI 344
Query: 357 NINY-KNNIANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ ++ I LSA S +G+ LLR+ L + QT ESS + AR RH+ +L A+
Sbjct: 345 ALEVSEDGHVTISLSAKSGGVGLELLRDHLKACMGYEQTSESS-FSARRRHLEALRHASA 403
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L +++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 404 ALEH-----GRAQLTLAGAGELLAEDLRQAQQSLGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|90194074|gb|ABD92598.1| ThdF [Avibacterium gallinarum]
Length = 435
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 196/462 (42%), Positives = 280/462 (60%), Gaps = 36/462 (7%)
Query: 13 TPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFK 72
TP GRGGVGI+R+SG + E V K LKPR A Y F + ++D+G+ ++FK
Sbjct: 1 TPIGRGGVGILRVSGPLAQQVAEAVLGKN---LKPRVANYLPFKDIDGTVLDQGIALFFK 57
Query: 73 APHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQ 132
AP+S+TGEDV+EL GHGG IIL +LL L++ G+RLA PGEF+++AFLN+KLDL Q
Sbjct: 58 APNSFTGEDVLELQGHGGQIILDLLLKRILQVK---GVRLARPGEFSEQAFLNDKLDLAQ 114
Query: 133 VEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELIL 192
EAI DLI+A++E AA+SA+ SL G+FS IN L+D +I LRT +E + DFP+E + +
Sbjct: 115 AEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDDVIYLRTYVEAAIDFPDEEIDFLA 174
Query: 193 NKNDFFNELIKIKKKLLKIIQQ-------GKKRALIRNGLNVVLIGQPNVGKSSLFNSLV 245
+ KI+ KL +II Q K+ A++R G+ VV+ G+PN GKSSL N+L
Sbjct: 175 DG--------KIEAKLREIIAQLAAVRAEAKQGAILREGMKVVIAGRPNAGKSSLLNALA 226
Query: 246 GSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTW 305
G + AIVT IAGTTRD + + I I+ I DTAG+ D +EVE+IGI R W
Sbjct: 227 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT-------DEVERIGIRRAW 279
Query: 306 VELKNSDIIIYVQDARYDKH--TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNN 363
E++ +D II + D+ + + + P NIP+ V NK D SG + I+ +N
Sbjct: 280 DEIEQADRIILMLDSTDSEENLAQVRSEFLAKLPNNIPLTIVRNKADLSGEAETISEQNG 339
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
+I LSA ++G++LLR L + + E +LAR RH+ +L +A+ +L + +
Sbjct: 340 QTSISLSAKTQVGVDLLREHLKQAMGYNTSAEGG-FLARRRHLEALEQADIHLQAGLIQL 398
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
+ EL+AE+LR LS I G+ T++DLL NIF
Sbjct: 399 TEFYAG-----ELLAEELRMVQNHLSEITGQFTSDDLLGNIF 435
>gi|238765479|ref|ZP_04626398.1| tRNA modification GTPase mnmE [Yersinia kristensenii ATCC 33638]
gi|238696303|gb|EEP89101.1| tRNA modification GTPase mnmE [Yersinia kristensenii ATCC 33638]
Length = 454
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 285/474 (60%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ I+ ATPPGRGGVGI+R+SG+ ++ E V K K PR+A Y F + +
Sbjct: 1 MSTTDTIVAQATPPGRGGVGILRVSGRAAAAVAEAVLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ +YF P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 58 TLDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILAL---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS I+ L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSVRIHKLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L ++ + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ + N +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAN-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D + T+ + + P +P+ V NK D +G +
Sbjct: 287 ERAWHEIEQADRVLFMVDGTTTEATEPAAIWPEFMARLPATLPITVVRNKADITGETLGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N + I LSA GI+LLRN L + T E +LAR RH+ +L A +L
Sbjct: 347 TEVNGHSLIRLSARTGEGIDLLRNHLKQSMGFTSNTEGG-FLARRRHLQALETAAQHLVQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + + EL+AE+LR + LS I G+ +++DLL IFS FCIGK
Sbjct: 406 GHEQLVSAYAG-----ELLAEELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454
>gi|146313778|ref|YP_001178852.1| tRNA modification GTPase TrmE [Enterobacter sp. 638]
gi|166991109|sp|A4WGH1.1|MNME_ENT38 RecName: Full=tRNA modification GTPase MnmE
gi|145320654|gb|ABP62801.1| tRNA modification GTPase trmE [Enterobacter sp. 638]
gi|190171238|gb|ACE63689.1| ThdF [Enterobacter sp. 638]
Length = 454
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 277/474 (58%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKAREVAEAVLGKLPK---PRYADYLPFNDADGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIAKPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSTRVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNTVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTSAVDPADIWPDFIARLPAKLPITVVRNKADMTGETLGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + I LSA G+ LRN L + +E +LAR RH+ +L A +L
Sbjct: 347 SDVNGHSLIRLSARTGEGVEDLRNHLKQSMGFETNMEGG-FLARRRHLQALEAAANHLDQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|224585642|ref|YP_002639441.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|254811494|sp|C0Q2L4.1|MNME_SALPC RecName: Full=tRNA modification GTPase MnmE
gi|224470170|gb|ACN48000.1| tRNA modification GTPase [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
Length = 454
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 282/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F + +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKLPK---PRYADYLPFKDVDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D I P N+P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + + LSA G+++LRN L + +E +LAR RH+ +L EA +L
Sbjct: 347 SEVNGHSLVRLSARTGEGVDVLRNHLKQSMGFDINMEGG-FLARRRHLQALAEAAEHLEQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|119947214|ref|YP_944894.1| tRNA modification GTPase TrmE [Psychromonas ingrahamii 37]
gi|166234813|sp|A1T0N0.1|MNME_PSYIN RecName: Full=tRNA modification GTPase MnmE
gi|119865818|gb|ABM05295.1| tRNA modification GTPase trmE [Psychromonas ingrahamii 37]
Length = 455
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 195/475 (41%), Positives = 291/475 (61%), Gaps = 23/475 (4%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M+ I+ AT PGRGGVGIIR+SG ++ ++ +++ K K RFA Y SF ++N
Sbjct: 1 MIKAIDTIVAQATAPGRGGVGIIRISGPDVEAVAKVILGKVPKL---RFAEYLSFSDQHN 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
++D+G+ ++FKAP+S+TGEDV+EL GHGGP+++ ML+ + L I LR A PGEF++
Sbjct: 58 EVLDQGIALFFKAPNSFTGEDVLELQGHGGPVVMDMLIKAILSIKN---LRGANPGEFSE 114
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAF+N+KLDL Q E I DLI A++E AAKSA+ SL G+FS+ I L++ LI LR +E S
Sbjct: 115 RAFMNDKLDLAQAEGIADLIEATSEQAAKSALHSLQGEFSEKIEQLVESLIYLRIYVEAS 174
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + L+ L +I L + +Q K+ A++R+G+ VV+ G+PN GKSSL
Sbjct: 175 IDFPEEEVDF-LSDGKISKGLYQIIDNLEAVKKQAKQGAILRDGMKVVIAGRPNAGKSSL 233
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
NSLVG + AIVT IAGTTRD + + I I+ I DTAG +++ +E+EKIG
Sbjct: 234 LNSLVGVERAIVTDIAGTTRDVMREHIHIDGMPLHIIDTAG-------LREGADEIEKIG 286
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
IER W E+ +D I+++ DA D + I P ++ + V NK D +G +
Sbjct: 287 IERAWQEITTADRILFMLDATTTSAEDPRQIWPDFIDKLPKSVGLTVVRNKADLTGEAFS 346
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
+ ++ +SA G++LL+ L D++ Q +S ++AR RH+ +++ A +L
Sbjct: 347 MTENHDHPVYRISAKTGQGVDLLKEHLKDIM-GYQGHTTSGFMARRRHLEAIDNAQRHL- 404
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + + K EL+AE+LR + LS I G +++DLL IFS FCIGK
Sbjct: 405 ----LEGKVQLEEYKAGELLAEELRLTQQYLSEITGAFSSDDLLGKIFSSFCIGK 455
>gi|378953801|ref|YP_005211289.1| protein TrME [Pseudomonas fluorescens F113]
gi|359763815|gb|AEV65894.1| TrME [Pseudomonas fluorescens F113]
Length = 456
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 196/478 (41%), Positives = 282/478 (58%), Gaps = 28/478 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKK-TKKQLKPRFATYSSFFCKN 59
M I +AT GRGGVGI+R+SG + + K + ++LKPRFA Y FF +
Sbjct: 1 MSAPRETIAAVATAQGRGGVGIVRISGP----LASVAAKAISGRELKPRFAHYGPFFSDD 56
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFT 119
++D+GL +YF P+S+TGEDV+EL GHGGPI+L MLL CLE+G RLA PGEF+
Sbjct: 57 QQVLDEGLALYFPGPNSFTGEDVLELQGHGGPIVLDMLLKRCLELG----CRLARPGEFS 112
Query: 120 KRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEF 179
+RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G FS+ ++ L ++LI LR +E
Sbjct: 113 ERAFLNDKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVHNLTEQLIGLRIYVEA 172
Query: 180 SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
+ DFPEE + + + + + L K++ +L ++++ + AL+R+G+ VV+ G+PN GKSS
Sbjct: 173 AIDFPEEEIDFLADGH-VLSMLDKVRGELSTVLREAGQGALLRDGMTVVIAGRPNAGKSS 231
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + ++VEKI
Sbjct: 232 LLNALAGREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTD-------DQVEKI 284
Query: 300 GIERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356
G+ER + +D ++ V DA + D + ++ P V + NK D +G
Sbjct: 285 GVERALKAIGEADRVLLVVDATAPEADDPFALWPEFLEVRPDPAKVTLIRNKADLTGEAI 344
Query: 357 NINYKNN-IANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ N+ I LSA S G+ LLR L + QT ESS + AR RH+ +L A+
Sbjct: 345 VLEVSNDGHVTISLSAKSAGEGLELLREHLKACMGYEQTSESS-FSARRRHLEALRHASA 403
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L +++ EL+AEDLR L I G +++DLL IFS FCIGK
Sbjct: 404 ALEH-----GRAQLTLAGAGELLAEDLRQAQHSLGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|398869679|ref|ZP_10625037.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM74]
gi|398210528|gb|EJM97172.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM74]
Length = 456
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 194/479 (40%), Positives = 283/479 (59%), Gaps = 30/479 (6%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKK-TKKQLKPRFATYSSFFCKN 59
M I +AT GRGGVGI+R+SG + + K + ++LKPRFA Y FF +N
Sbjct: 1 MSVPRETIAAVATAQGRGGVGIVRISGP----LASVAAKAFSGRELKPRFAHYGPFFSEN 56
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFT 119
+ ++D+G+ +YF P+S+TGEDV+EL GHGGPI+L MLL CLE +G RLA PGEF+
Sbjct: 57 DEVLDQGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLKRCLE----LGCRLARPGEFS 112
Query: 120 KRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEF 179
+RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G FS ++ L ++LI LR +E
Sbjct: 113 ERAFLNDKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSTRVHNLTEQLIGLRIYVEA 172
Query: 180 SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
+ DFPEE + + + + + L K++ +L +I++ + AL+R+G+ VV+ G+PN GKSS
Sbjct: 173 AIDFPEEEIDFLADGH-VLSMLDKVRDELSTVIREAGQGALLRDGMTVVIAGRPNAGKSS 231
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N+L G + AIVT IAGTTRD + + I I+ DTAG+ D + + VEKI
Sbjct: 232 LLNALAGREAAIVTEIAGTTRDVLREHIHIDGMPLHAVDTAGLRDTD-------DHVEKI 284
Query: 300 GIERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356
G+ER + +D ++ V DA + D + ++ P V + NK D +G
Sbjct: 285 GVERALKAIGEADRVLLVVDATAPEALDPFALWPEFLEIRPDPAKVTLIRNKADLTGEAI 344
Query: 357 NINYKNNIANIYLSASKR---IGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEAN 413
+ + ++ LS S + G++LLR L + QT ESS + AR RH+ +L A+
Sbjct: 345 ALEVSED-GHVTLSLSAKSGGAGLDLLREHLKACMGYEQTSESS-FSARRRHLEALRHAS 402
Query: 414 YYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L +++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 403 AALEH-----GRAQLTLAGAGELLAEDLRQAQQSLGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|423142315|ref|ZP_17129953.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. houtenae
str. ATCC BAA-1581]
gi|379050244|gb|EHY68137.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. houtenae
str. ATCC BAA-1581]
Length = 454
Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 280/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKARDVAQAVLGKLPK---PRYADYLPFKDADGA 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I G+R+A PGEF++R
Sbjct: 58 TLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGVRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGVFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNGVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D I P N+P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N + + LSA G+++LR+ L + +E +LAR RH+ +L EA +L
Sbjct: 347 CEVNGHSLVRLSARTGEGVDVLRHHLKQSMGFDTNMEGG-FLARRRHLQALAEAAEHLEQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|421356466|ref|ZP_15806788.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|421360982|ref|ZP_15811252.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|421366020|ref|ZP_15816226.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|421373120|ref|ZP_15823264.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|421377372|ref|ZP_15827469.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|421379333|ref|ZP_15829403.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|421386657|ref|ZP_15836667.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|421390900|ref|ZP_15840874.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|421392724|ref|ZP_15842675.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|421397310|ref|ZP_15847227.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|421404340|ref|ZP_15854183.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|421406335|ref|ZP_15856150.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|421410673|ref|ZP_15860450.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|421417842|ref|ZP_15867551.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|421422870|ref|ZP_15872536.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|421426918|ref|ZP_15876545.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|421428880|ref|ZP_15878482.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|421435969|ref|ZP_15885504.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|421437939|ref|ZP_15887444.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|421445064|ref|ZP_15894493.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|436611298|ref|ZP_20513863.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22704]
gi|436809661|ref|ZP_20529008.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|436817727|ref|ZP_20534616.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|436831585|ref|ZP_20536246.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|436847727|ref|ZP_20539789.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|436855377|ref|ZP_20544632.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|436862365|ref|ZP_20549096.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|436868296|ref|ZP_20553142.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|436880666|ref|ZP_20560354.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|436886075|ref|ZP_20562639.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|436893107|ref|ZP_20567154.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|436905856|ref|ZP_20574832.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|436913613|ref|ZP_20578904.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|436916016|ref|ZP_20580162.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|436927644|ref|ZP_20587395.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|436936822|ref|ZP_20592175.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|436943837|ref|ZP_20596660.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|436952365|ref|ZP_20601146.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|436962347|ref|ZP_20605525.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|436971791|ref|ZP_20610017.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|436976995|ref|ZP_20612168.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|436999180|ref|ZP_20620090.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|437002033|ref|ZP_20621186.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|437013298|ref|ZP_20625166.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|437028795|ref|ZP_20630793.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|437040211|ref|ZP_20634598.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|437047423|ref|ZP_20638868.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|437061078|ref|ZP_20646794.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|437067239|ref|ZP_20650257.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|437076679|ref|ZP_20655022.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|437079930|ref|ZP_20656805.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|437087273|ref|ZP_20661083.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|437100934|ref|ZP_20666189.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|437121741|ref|ZP_20671918.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|437127389|ref|ZP_20674736.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|437135022|ref|ZP_20679167.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|437147263|ref|ZP_20686792.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|437153972|ref|ZP_20690832.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|437163547|ref|ZP_20696729.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|437164528|ref|ZP_20697166.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|437178289|ref|ZP_20704598.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|437181633|ref|ZP_20706658.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|437242036|ref|ZP_20714474.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|437261439|ref|ZP_20718487.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|437270712|ref|ZP_20723382.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|437279496|ref|ZP_20727744.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|437283689|ref|ZP_20729222.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|437304748|ref|ZP_20734089.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|437362660|ref|ZP_20748403.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
gi|437418631|ref|ZP_20754298.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|437446506|ref|ZP_20758768.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|437458957|ref|ZP_20760926.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|437471475|ref|ZP_20765242.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|437493506|ref|ZP_20772157.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|437503085|ref|ZP_20774796.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|437522111|ref|ZP_20778995.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|437561158|ref|ZP_20786326.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|437569752|ref|ZP_20788040.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|437592794|ref|ZP_20795255.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|437598787|ref|ZP_20796761.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|437617948|ref|ZP_20803016.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|437637813|ref|ZP_20807402.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|437655380|ref|ZP_20810435.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|437680115|ref|ZP_20818324.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|437699235|ref|ZP_20823426.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|437714659|ref|ZP_20827697.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|437734121|ref|ZP_20832176.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|437746694|ref|ZP_20833594.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 76-2651]
gi|437801896|ref|ZP_20838261.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 33944]
gi|437953426|ref|ZP_20852084.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|437998024|ref|ZP_20854101.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-5646]
gi|438090335|ref|ZP_20860541.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|438097438|ref|ZP_20862360.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|438107603|ref|ZP_20866815.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|445167407|ref|ZP_21394394.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|445181333|ref|ZP_21398312.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 20037]
gi|445223199|ref|ZP_21403405.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|445346086|ref|ZP_21418610.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|445359802|ref|ZP_21423190.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
gi|395991642|gb|EJI00765.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|395993939|gb|EJI03028.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|395994123|gb|EJI03203.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|395998178|gb|EJI07211.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|395999050|gb|EJI08073.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|396006961|gb|EJI15921.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|396011977|gb|EJI20877.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|396013071|gb|EJI21960.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|396020241|gb|EJI29087.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|396026340|gb|EJI35109.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|396034091|gb|EJI42794.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|396034228|gb|EJI42929.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|396038967|gb|EJI47598.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|396039534|gb|EJI48159.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|396048146|gb|EJI56706.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|396053369|gb|EJI61865.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|396055648|gb|EJI64131.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|396060475|gb|EJI68919.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|396066380|gb|EJI74744.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|396074692|gb|EJI82977.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|434966175|gb|ELL59062.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|434969514|gb|ELL62207.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22704]
gi|434971268|gb|ELL63802.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|434981989|gb|ELL73829.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|434991204|gb|ELL82718.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|434992524|gb|ELL83973.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|434999021|gb|ELL90229.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|435004325|gb|ELL95299.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|435004882|gb|ELL95824.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|435012259|gb|ELM02944.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|435015392|gb|ELM05931.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|435019811|gb|ELM10246.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|435023965|gb|ELM14198.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|435033293|gb|ELM23196.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|435035902|gb|ELM25741.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|435037414|gb|ELM27225.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|435041684|gb|ELM31424.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|435049544|gb|ELM39070.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|435049752|gb|ELM39267.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|435056238|gb|ELM45630.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|435060741|gb|ELM49987.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|435071030|gb|ELM59988.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|435074326|gb|ELM63159.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|435084020|gb|ELM72614.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|435087076|gb|ELM75595.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|435087548|gb|ELM76044.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|435089761|gb|ELM78179.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|435096630|gb|ELM84897.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|435100350|gb|ELM88527.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|435104439|gb|ELM92493.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|435114173|gb|ELN01986.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|435118263|gb|ELN05930.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|435124307|gb|ELN11773.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|435125351|gb|ELN12795.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|435129661|gb|ELN16950.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|435134103|gb|ELN21237.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|435139050|gb|ELN26056.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|435140668|gb|ELN27628.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|435140855|gb|ELN27799.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|435153591|gb|ELN40198.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|435154807|gb|ELN41366.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|435162793|gb|ELN48951.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|435166147|gb|ELN52148.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|435170849|gb|ELN56576.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|435170917|gb|ELN56642.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|435178353|gb|ELN63585.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|435186660|gb|ELN71478.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|435187665|gb|ELN72409.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|435201863|gb|ELN85736.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|435209775|gb|ELN93062.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
gi|435209877|gb|ELN93157.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|435222617|gb|ELO04714.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|435227053|gb|ELO08586.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|435227824|gb|ELO09276.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|435237259|gb|ELO17955.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|435237822|gb|ELO18479.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|435250007|gb|ELO29762.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|435250769|gb|ELO30487.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|435252865|gb|ELO32358.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|435259640|gb|ELO38856.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|435263754|gb|ELO42788.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|435271810|gb|ELO50249.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|435272870|gb|ELO51245.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|435274680|gb|ELO52779.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|435278975|gb|ELO56796.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|435285880|gb|ELO63240.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|435286863|gb|ELO64103.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|435303835|gb|ELO79667.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 33944]
gi|435305872|gb|ELO81284.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|435312312|gb|ELO86258.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 76-2651]
gi|435316429|gb|ELO89567.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|435326963|gb|ELO98742.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|435333430|gb|ELP04249.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|435336016|gb|ELP06057.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-5646]
gi|444865287|gb|ELX90061.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|444869286|gb|ELX93879.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|444871691|gb|ELX96093.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 20037]
gi|444878374|gb|ELY02493.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|444885387|gb|ELY09178.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
Length = 454
Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 282/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F + +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKLPK---PRYADYLPFKDVDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++R
Sbjct: 58 ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D I P N+P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + + LSA G+++LRN L + +E +LAR RH+ +L EA +L
Sbjct: 347 SEVNGHSLVRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALAEAAEHLEQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQILSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|398868353|ref|ZP_10623752.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM78]
gi|398233323|gb|EJN19257.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM78]
Length = 456
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 192/477 (40%), Positives = 281/477 (58%), Gaps = 26/477 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M I +AT GRGGVGI+R+SG E + ++LKPRFA Y F +N+
Sbjct: 1 MSAPRETIAAVATAQGRGGVGIVRISGPLASVAAEAF---SGRELKPRFAHYGPFLGEND 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
++D+G+ +YF P+S+TGEDV+EL GHGGP++L MLL CL +G RLA PGEF++
Sbjct: 58 EVLDQGIALYFPGPNSFTGEDVLELQGHGGPVVLDMLLQRCL----GLGCRLARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G FS ++ L ++LI LR +E +
Sbjct: 114 RAFLNDKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSARVHNLTEQLIGLRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + + + + + L K++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDFLADGH-VLSMLDKVRDELSTVMREAGQGALLRDGMTVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + + VEKIG
Sbjct: 233 LNALAGREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTD-------DHVEKIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
+ER + +D ++ V DA + D + ++ P V + NK D +G
Sbjct: 286 VERALKAIGEADRVLLVVDATAPEALDPFALWPEFLETRPDPAKVTLIRNKADLTGESMA 345
Query: 358 INYKNN-IANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYY 415
+ ++ I LSA S +G+ LLR+ L + QT ESS + AR RH+ +L A+
Sbjct: 346 LEVSDDGHVTISLSAKSAGVGLELLRDHLKACMGYEQTSESS-FSARRRHLEALRHASAS 404
Query: 416 LSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L +++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 405 LEH-----GRAQLTLAGAGELLAEDLRQAQQSLGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|398891371|ref|ZP_10644747.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM55]
gi|398187052|gb|EJM74406.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM55]
Length = 456
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 194/478 (40%), Positives = 284/478 (59%), Gaps = 28/478 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKK-TKKQLKPRFATYSSFFCKN 59
M I +AT GRGGVGI+R+SG + + K + ++LKPRFA Y F ++
Sbjct: 1 MSVPRETIAAVATAQGRGGVGIVRISGP----LASVAAKAFSGRELKPRFAHYGPFLGEH 56
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFT 119
+ ++D+G+ +YF P+S+TGEDV+EL GHGGPI+L MLL CLE+G RLA PGEF+
Sbjct: 57 DEVLDQGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLKRCLELG----CRLARPGEFS 112
Query: 120 KRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEF 179
+RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G FS ++ L ++LI LR +E
Sbjct: 113 ERAFLNDKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSSRVHNLTEQLIGLRIYVEA 172
Query: 180 SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
+ DFPEE + + + + + L K++ +L ++++ + AL+R+G+ VV+ G+PN GKSS
Sbjct: 173 AIDFPEEEIDFLADGH-VLSMLDKVRDELSTVMREAGQGALLRDGMTVVIAGRPNAGKSS 231
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + + VEKI
Sbjct: 232 LLNALAGREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTD-------DHVEKI 284
Query: 300 GIERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356
G+ER + +D ++ V DA + D + ++ P V + NK D +G
Sbjct: 285 GVERALKAIGEADRVLLVVDATAPEALDPFALWPEFLEIRPDPAKVTLIRNKADLTGEAI 344
Query: 357 NINYKNN-IANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
I ++ I LSA S +G+ LLR+ L + QT ESS + AR RH+ +L A+
Sbjct: 345 AIEVSDDGHVTISLSAKSGGVGLELLRDHLKACMGYEQTSESS-FSARRRHLEALGHASA 403
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L +++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 404 ALEH-----GRAQLTLAGAGELLAEDLRQAQQSLGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|146284521|ref|YP_001174674.1| tRNA modification GTPase TrmE [Pseudomonas stutzeri A1501]
gi|166234812|sp|A4VS81.1|MNME_PSEU5 RecName: Full=tRNA modification GTPase MnmE
gi|145572726|gb|ABP81832.1| tRNA modification GTPase TrmE [Pseudomonas stutzeri A1501]
Length = 455
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 188/476 (39%), Positives = 281/476 (59%), Gaps = 25/476 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M+ I +AT PGRGGVGI+R+SG +I + + ++ PR A Y F +
Sbjct: 1 MIPARDTIAAVATAPGRGGVGIVRVSGPRARAIAITL---SGREPTPRHAHYGPFHADDG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+ID+GL+++F PHS+TGEDV+ELHGHGGP++L MLL C+++G +RLA PGEF++
Sbjct: 58 EVIDEGLLLFFPGPHSFTGEDVLELHGHGGPVVLDMLLQRCVDLG----VRLARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G+FS+ ++ L ++LI LR +E +
Sbjct: 114 RAFLNDKLDLAQAEAIADLIEASSAQAARNAVRSLQGEFSRRVHQLTERLIQLRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + + + + +L ++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDFLADGH-VLAQLDGVRTELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D ++VE+IG
Sbjct: 233 LNALAGREAAIVTDIAGTTRDVLREHILIDGMPLHVVDTAGLRDTE-------DQVERIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
++R + +D I+ V DA + +D + + P V + NK D +G
Sbjct: 286 VQRALSAIGEADRILLVVDASAPEASDPSALWPEFLDFSPEPGKVTLIRNKADLTGEAIV 345
Query: 358 INYKNN-IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYL 416
+ N+ A + L A G+ LLR L + QT ESS + AR RH+ +L A+ +L
Sbjct: 346 LRCDNDGQATLSLCARSGEGLELLREHLKHCMGYEQTAESS-FSARRRHLDALRLADEHL 404
Query: 417 SCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 405 RH-----GHDQLTLAGAGELLAEDLRLAQQALGEITGAFSSDDLLGRIFSSFCIGK 455
>gi|37678186|ref|NP_932795.1| tRNA modification GTPase TrmE [Vibrio vulnificus YJ016]
gi|37196925|dbj|BAC92766.1| thiophene and furan oxidation protein ThdF [Vibrio vulnificus
YJ016]
Length = 462
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 195/469 (41%), Positives = 282/469 (60%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG ++ + T K LK R+A Y F ++ + +D+G+
Sbjct: 15 IVAQATAPGRGGVGIIRVSGPQ---AAQVALEVTGKTLKARYAEYLPFKAQDGSELDQGI 71
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F PHS+TGEDV+EL GHGGP+++ ML+ L I G+R A PGEF++RAFLN+K
Sbjct: 72 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILTIS---GVRPARPGEFSERAFLNDK 128
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FSK I+ L++ LI+LR +E + DFPEE
Sbjct: 129 MDLTQAEAIADLIDASSEEAAKSALQSLQGQFSKRIHTLVESLIHLRIYVEAAIDFPEEE 188
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 189 IDF-LADGKVAGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 247
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
D AIVT IAGTTRD + + I I+ I DTAG+ D + +EVEKIGIER W E
Sbjct: 248 DSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVEKIGIERAWDE 300
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQKNINYKNN 363
++ +D ++++ D TD K+I +F P I + + NK D + I + +
Sbjct: 301 IRQADRVLFMVDGTTTDATD-PKEIWPDFIDRLPEQIGITVIRNKADQTQESLGICHVSQ 359
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA G+ LRN L + + + E ++AR RH+ +L A +L +I
Sbjct: 360 PTLIRLSAKTGQGVEALRNHLKECMGFSGNSEGG-FMARRRHLDALQRAAEHL-----LI 413
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 414 GQEQLEGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 462
>gi|423098359|ref|ZP_17086155.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens Q2-87]
gi|397882924|gb|EJK99411.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens Q2-87]
Length = 456
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 197/477 (41%), Positives = 285/477 (59%), Gaps = 31/477 (6%)
Query: 5 NSP---IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKK-TKKQLKPRFATYSSFFCKNN 60
N+P I +AT GRGGVGI+R+SG + + K + ++LKPRFA Y FF +
Sbjct: 2 NAPRETIAAVATAQGRGGVGIVRISGP----LAGVAAKAISGRELKPRFAHYGPFFSDDQ 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
++D+GL +YF P+S+TGEDV+EL GHGGPI+L MLL CLE+G RLA PGEF++
Sbjct: 58 QVLDEGLALYFPGPNSFTGEDVLELQGHGGPIVLDMLLKRCLELG----CRLARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G FS+ ++ L ++LI LR +E +
Sbjct: 114 RAFLNDKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVHNLTEQLIGLRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + + + + + L KI+ +L ++++ + AL+R+G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDFLADGH-VLSMLDKIRDELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + ++VEKIG
Sbjct: 233 LNALAGREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTD-------DQVEKIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
+ER + +D ++ V DA + D + ++ P V + NK D +G
Sbjct: 286 VERALKAIGEADRVLLVVDATSPEADDPFALWPEFLEVRPDPAKVTLIRNKADLTGEAIV 345
Query: 358 INYKNN-IANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYY 415
+ ++ I LSA S G+ LLR L + QT ESS + AR RH+ +L A+
Sbjct: 346 LEISDDGHVTISLSAKSAGEGLELLREHLKACMGYEQTSESS-FSARRRHLEALRHASTA 404
Query: 416 LSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L +++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 405 LEH-----GRAQLTLAGAGELLAEDLRLAQQSLGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|386289374|ref|ZP_10066504.1| tRNA modification GTPase TrmE [gamma proteobacterium BDW918]
gi|385277437|gb|EIF41419.1| tRNA modification GTPase TrmE [gamma proteobacterium BDW918]
Length = 455
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 197/469 (42%), Positives = 287/469 (61%), Gaps = 26/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN---IID 64
I IATPPG+GGVGI+R+SG I + K LKPR+A Y SF+ +++ +D
Sbjct: 9 IAAIATPPGKGGVGIVRVSGPQAQEIGHRLLGKAD--LKPRYAHYGSFYEASDDGPRSLD 66
Query: 65 KGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFL 124
+G+ +YF P+S+TGEDV+EL GHGGPIIL LL ++ G R+A PGEF++RAFL
Sbjct: 67 QGIALYFPGPNSFTGEDVLELQGHGGPIILDCLLREVIKAGA----RIARPGEFSERAFL 122
Query: 125 NNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFP 184
NNK+DL Q EAI DLI++++E AA+ A+ SL G+FSK IN L++ + LR +E + DFP
Sbjct: 123 NNKIDLAQAEAIADLIDSASEQAARQAVRSLEGEFSKEINQLVEAITQLRIYVEAAIDFP 182
Query: 185 EENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSL 244
EE + I + +EL IK+ L ++ K+ +++R G+ VV+ G+PN GKSSL N+L
Sbjct: 183 EEEIDFI-SDGRVASELSAIKQNLERVFASAKQGSILREGMTVVIAGRPNAGKSSLLNAL 241
Query: 245 VGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304
G + AIVT+IAGTTRD + + I I+ I DTAG+ D + + VE+ GI+R
Sbjct: 242 AGRESAIVTNIAGTTRDVLRENILIDGMPLHIIDTAGLRD-------SEDLVEQEGIKRA 294
Query: 305 WVELKNSDIIIYVQDAR-YDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNN 363
W E+ N+D I+ V D++ + +D ++ F + ++NK D SGHQ I+ +
Sbjct: 295 WTEIANADRILLVIDSQTAEAESDAIPSELQPFIDQQKLSIIYNKCDLSGHQVAID-NSE 353
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I+ IYLSA GI+LLR L + +P++AR RHI +LN ++
Sbjct: 354 ISRIYLSAKHAKGIDLLREHLKSCVGYNDG--DTPFIARRRHIEALNLGREHIHAG---- 407
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q N+ EL+AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 408 EQQLLNYNAG-ELLAEELRIAQQALAEITGEFSSDDLLGRIFSSFCIGK 455
>gi|167627608|ref|YP_001678108.1| tRNA modification GTPase TrmE [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|189036203|sp|B0TYD1.1|MNME_FRAP2 RecName: Full=tRNA modification GTPase MnmE
gi|167597609|gb|ABZ87607.1| GTPase of unknown function [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 450
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 213/478 (44%), Positives = 298/478 (62%), Gaps = 34/478 (7%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M TK++ I+ +ATP G GG+GI+R+SG + SI E K TKK+LKPR+AT+ + + N
Sbjct: 1 MYTKDT-IVAVATPQGNGGIGIVRISGSDALSIAE---KLTKKRLKPRYATFCNIY-NIN 55
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
IID G+VI+F +P+SYTGEDV+E+ HG P IL++++ + LE G R+A GEFT+
Sbjct: 56 EIIDHGIVIFFNSPNSYTGEDVVEIQAHGNPFILNLIIKATLEYGA----RMANAGEFTE 111
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLNNKLDL Q EA+ D+INAS+E+AAKSA SL G FSK IN LL+KLI LR +E S
Sbjct: 112 RAFLNNKLDLTQAEAVADIINASSETAAKSAAKSLQGDFSKEINNLLEKLIYLRMYVEAS 171
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE L N L I K +L + K+ A++ G+ ++L+G+PN GKSSL
Sbjct: 172 IDFPEEEINF-LEDQKIHNSLQDIYKTILDVKNSCKQGAILVEGITLILVGKPNAGKSSL 230
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVTSIAGTTRD + + IQIN I DTAG ++ + + +E G
Sbjct: 231 LNALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAG-------LRSSDDIIESEG 283
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFD--KKIIKNF----PMNIPVIYVWNKIDYSGH 354
I+R +++ +D I++V D + F K II F P +I + YV NKID
Sbjct: 284 IKRAIKKIQEADQILFVTDDYTNSQVKFSDIKDIIPEFYHQIPKDIDITYVHNKIDLL-K 342
Query: 355 QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ +N+ N +IY+SA IGI+ L++ +L + T T S Y ARERH+ +++ A
Sbjct: 343 EVPLNHDN---HIYISAESNIGIDKLKDHILAKVGYT-TQNESIYTARERHVTAIDNAFD 398
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ A E+ N EL+AE+L E L+SI G+ +++DLL IFS FCIGK
Sbjct: 399 HIKLA------KEQLELGNGELLAEELLIVQEHLNSITGEFSSDDLLGEIFSSFCIGK 450
>gi|398999408|ref|ZP_10702144.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM18]
gi|398131443|gb|EJM20759.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM18]
Length = 456
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 193/479 (40%), Positives = 283/479 (59%), Gaps = 30/479 (6%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKK-TKKQLKPRFATYSSFFCKN 59
M I +AT GRGGVGI+R+SG + + K + ++LKPRFA Y F +N
Sbjct: 1 MSVPRETIAAVATAQGRGGVGIVRISGP----LASVAAKAISGRELKPRFAHYGPFLSEN 56
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFT 119
++D+G+ +YF P+S+TGEDV+EL GHGGPI+L MLL CLE+G RLA PGEF+
Sbjct: 57 EEVLDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLKRCLELG----CRLARPGEFS 112
Query: 120 KRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEF 179
+RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G FS+ ++ L ++LI LR +E
Sbjct: 113 ERAFLNDKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVHNLTEQLIGLRIYVEA 172
Query: 180 SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
+ DFPEE + + + + + L K++ +L ++++ + AL+R+G+ VV+ G+PN GKSS
Sbjct: 173 AIDFPEEEIDFLADGH-VLSMLDKVRDELSTVLREAGQGALLRDGMTVVIAGRPNAGKSS 231
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + ++VEKI
Sbjct: 232 LLNALAGREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTD-------DQVEKI 284
Query: 300 GIERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356
G+ER + +D ++ V DA + D + ++ P V + NK D +G
Sbjct: 285 GVERALKAIGEADRVLLVVDATAPEALDPFALWPEFLETRPDPAKVTLIRNKADLTGEAI 344
Query: 357 NINYKNNIANIYLSASKRI---GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEAN 413
+ N+ ++ +S S R G+ LLR L + QT ESS + AR RH+ L A+
Sbjct: 345 ALEVSND-GHVTISLSARSAGEGLELLREHLKACMGYEQTSESS-FSARRRHLEVLRHAS 402
Query: 414 YYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L +++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 403 ASLEH-----GRAQLTLAGAGELLAEDLRQAQQSLGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|387891250|ref|YP_006321548.1| tRNA modification GTPase TrmE [Escherichia blattae DSM 4481]
gi|414595076|ref|ZP_11444707.1| tRNA modification GTPase MnmE [Escherichia blattae NBRC 105725]
gi|386926083|gb|AFJ49037.1| tRNA modification GTPase TrmE [Escherichia blattae DSM 4481]
gi|403193996|dbj|GAB82359.1| tRNA modification GTPase MnmE [Escherichia blattae NBRC 105725]
Length = 454
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 192/478 (40%), Positives = 280/478 (58%), Gaps = 31/478 (6%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG+ + V K K PR+A Y F + +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRVSGRQASDVARAVLGKLPK---PRYADYLPFRDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 58 TLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSGRVNELVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAGLNAVIASLDTVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G D AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGRDAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHT-------DFDKKIIKNFPMNIPVIYVWNKIDYSGH 354
ER W E++ +D ++++ D T DF + P +P+ V NK D +G
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDATSPAAIWPDF----VARLPDTLPLTVVRNKADITGE 342
Query: 355 QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ N + + LSA G+++LR+ L + ++E +LAR RH+ +L A
Sbjct: 343 PLGLTEVNGHSLVRLSARTGEGVDILRDHLKQSMGFETSMEGG-FLARRRHLQALELAAV 401
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L + + EL+AEDLR + LS I G T++DLL IFS FCIGK
Sbjct: 402 HLQQGKDQLLGARAG-----ELLAEDLRQAQQALSEITGAFTSDDLLGRIFSSFCIGK 454
>gi|46577354|sp|Q7MQK6.2|MNME_VIBVY RecName: Full=tRNA modification GTPase MnmE
Length = 453
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 195/469 (41%), Positives = 282/469 (60%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG ++ + T K LK R+A Y F ++ + +D+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGPQ---AAQVALEVTGKTLKARYAEYLPFKAQDGSELDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F PHS+TGEDV+EL GHGGP+++ ML+ L I G+R A PGEF++RAFLN+K
Sbjct: 63 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILTIS---GVRPARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FSK I+ L++ LI+LR +E + DFPEE
Sbjct: 120 MDLTQAEAIADLIDASSEEAAKSALQSLQGQFSKRIHTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LADGKVAGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
D AIVT IAGTTRD + + I I+ I DTAG+ D + +EVEKIGIER W E
Sbjct: 239 DSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVEKIGIERAWDE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQKNINYKNN 363
++ +D ++++ D TD K+I +F P I + + NK D + I + +
Sbjct: 292 IRQADRVLFMVDGTTTDATD-PKEIWPDFIDRLPEQIGITVIRNKADQTQESLGICHVSQ 350
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA G+ LRN L + + + E ++AR RH+ +L A +L +I
Sbjct: 351 PTLIRLSAKTGQGVEALRNHLKECMGFSGNSEGG-FMARRRHLDALQRAAEHL-----LI 404
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 405 GQEQLEGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|381395676|ref|ZP_09921371.1| tRNA modification GTPase mnmE [Glaciecola punicea DSM 14233 = ACAM
611]
gi|379328555|dbj|GAB56504.1| tRNA modification GTPase mnmE [Glaciecola punicea DSM 14233 = ACAM
611]
Length = 458
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 197/471 (41%), Positives = 282/471 (59%), Gaps = 23/471 (4%)
Query: 5 NSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIID 64
N I+ AT PGRG VGI+R+SG N + E++ KK PR ATY F+ N+IID
Sbjct: 8 NDTIVAQATAPGRGSVGIVRVSGPNAKPVAELLLKKCPV---PRVATYQPFYNSQNHIID 64
Query: 65 KGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFL 124
+G+ +YF P+S+TGED++EL GHGG +++ +L+ +CL+ G +RLA PGEF+++AFL
Sbjct: 65 QGIALYFAGPNSFTGEDILELQGHGGQVVMQLLIDTCLKSGL---VRLAKPGEFSEQAFL 121
Query: 125 NNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFP 184
N K+DL Q EAI DLI+AS++ AAKSA+ SL G+FS I L+DK+I LR +E + DFP
Sbjct: 122 NEKMDLTQAEAIADLIDASSQQAAKSALRSLQGEFSNQIRNLVDKVIYLRMYVEAAIDFP 181
Query: 185 EENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSL 244
EE + L + L I L KI+ Q K+ +L+R+G+ VV++G+PN GKSSL N+L
Sbjct: 182 EEEIDF-LADGIVQSNLHTIVTLLNKIMHQAKQGSLLRDGMRVVIVGRPNAGKSSLLNAL 240
Query: 245 VGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304
G D AIVT IAGTTRD + + I I+ I DTAG+ D + + VEKIGIER
Sbjct: 241 SGKDSAIVTDIAGTTRDVLKEHIHIDGMPLHIIDTAGLRD-------DADTVEKIGIERA 293
Query: 305 WVELKNSDIIIYVQDARYDKHT---DFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYK 361
W E+ N+D I+++ DA + ++ D + P N + + NK D I+
Sbjct: 294 WQEIHNADRILFMVDAEQEPNSQPKDIWPEFYDKLPANAAITVIRNKCDLIQEAPGIDNN 353
Query: 362 NNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIK 421
I LSA ++GI+ L L + + Q E +AR+RHI +L A ++
Sbjct: 354 QKYPVICLSAMAKLGIDTLTEHLKECMGFNQVGEDQ-VIARQRHITALINAQQHID---- 408
Query: 422 IINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
I + + EL+AE+LR L+ I G+ +++DLL IFS FCIGK
Sbjct: 409 -IGKDQLESAMAGELLAEELRIAQGYLNEITGEFSSDDLLSKIFSSFCIGK 458
>gi|384423364|ref|YP_005632722.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae
LMA3984-4]
gi|327482917|gb|AEA77324.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae
LMA3984-4]
Length = 453
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 191/468 (40%), Positives = 280/468 (59%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGR GVGIIR+SG + + V +T L+PR+A Y F ++ +D+G+
Sbjct: 6 IVAQATAPGRSGVGIIRVSGPLAAHVAQTVTGRT---LRPRYAEYLPFTDEDGQQLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F PHS+TGEDV+EL GHGGP+++ ML+ L+I G+R A PGEF++RAFLN+K
Sbjct: 63 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIK---GVRPARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FSK I+ L++ LI+LR +E + DFPEE
Sbjct: 120 MDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + + VEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DAVEKIGIERAWEE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFD---KKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D + TD + P NI + + NK D +G I + N
Sbjct: 292 IRQADRVLFMVDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQP 351
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G++ LR L + + + E ++AR RH+ +L A +L+ I
Sbjct: 352 TLIRLSAKTGQGVDALRQHLKECMGFSGNQEGG-FMARRRHLDALERAAEHLA-----IG 405
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 406 QQQLEGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|219871858|ref|YP_002476233.1| tRNA modification GTPase TrmE [Haemophilus parasuis SH0165]
gi|219692062|gb|ACL33285.1| tRNA modification GTPase TrmE [Haemophilus parasuis SH0165]
Length = 452
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 194/471 (41%), Positives = 290/471 (61%), Gaps = 29/471 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I ATP GRGG+GI+R+SG + + V K K PR A Y F ++ ++D+G+
Sbjct: 5 ITAQATPIGRGGIGILRVSGPLATEVAQAVLGKCPK---PRIADYLPFKDEDGTVLDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++FKAP+S+TGEDV+EL GHGG +IL +LL+ L++ G+R+A GEF+++AFLN+K
Sbjct: 62 ALFFKAPNSFTGEDVLELQGHGGQVILDLLLNRILKVK---GVRIARAGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AA+SA+ SL G+FS IN L+D +I LRT +E + DFP+E
Sbjct: 119 LDLAQAEAIADLIDATSEQAARSALKSLQGEFSNKINELVDSVIYLRTYVEAAIDFPDEE 178
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L +I +L + Q+ K+ ++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 179 IDF-LADGKIEAKLNEIIAQLANVRQEAKQGTILREGMKVVIAGKPNAGKSSLLNALAGR 237
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG +++ +EVEKIGI+R W E
Sbjct: 238 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVEKIGIKRAWDE 290
Query: 308 LKNSDIIIYVQDARYDKHTDFDKK---IIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++ + D+ + F ++ + P NIPV + NK+D +G +++ +N
Sbjct: 291 IEQADHVLLMIDSNESQADSFQQEWATFLAKLPKNIPVTVIRNKVDLTGEAESLVQADNF 350
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP---YLARERHIHSLNEANYYLSCAIK 421
I LSA ++G++LLR L +K+ +SS ++AR RH+ +L A +L
Sbjct: 351 TVIRLSAQTKVGVDLLREHL----KKSMGYQSSTEGGFIARRRHLVALETAAEHLERGHI 406
Query: 422 IINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ Q EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 407 QLTQFYAG-----ELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 452
>gi|398878965|ref|ZP_10634069.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM67]
gi|398883295|ref|ZP_10638252.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM60]
gi|398196957|gb|EJM83947.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM60]
gi|398197874|gb|EJM84846.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM67]
Length = 456
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 195/478 (40%), Positives = 282/478 (58%), Gaps = 28/478 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKK-TKKQLKPRFATYSSFFCKN 59
M I +AT GRGGVGI+R+SG + + K + ++LKPRFA Y FF +N
Sbjct: 1 MSAPRETIAAVATAQGRGGVGIVRISGP----LASVAAKAFSGRELKPRFAHYGPFFDQN 56
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFT 119
++D+G+ +YF P+S+TGEDV+EL GHGGPI+L MLL CLE +G RLA PGEF+
Sbjct: 57 EEVLDQGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLKRCLE----LGCRLARPGEFS 112
Query: 120 KRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEF 179
+RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G FS ++ L ++LI LR +E
Sbjct: 113 ERAFLNDKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSDRVHNLTEQLIGLRIYVEA 172
Query: 180 SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
+ DFPEE + + + + + L K++ +L ++++ + AL+R+G+ VV+ G+PN GKSS
Sbjct: 173 AIDFPEEEIDFLADGH-VLSMLDKVRDELSTVLREAGQGALLRDGMTVVIAGRPNAGKSS 231
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + + VEKI
Sbjct: 232 LLNALAGREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTD-------DHVEKI 284
Query: 300 GIERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356
G+ER + +D ++ V DA + D + ++ P V + NK D +G
Sbjct: 285 GVERALKAISEADRVLLVVDATAPEALDPFALWPEFLETRPDPAKVTLIRNKADLTGEAI 344
Query: 357 NINY-KNNIANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ ++ I LSA S G+ LLR+ L + QT ESS + AR RH+ +L A+
Sbjct: 345 ALEVSEDGHVTISLSAKSAGEGLELLRDHLKACMGYEQTSESS-FSARRRHLEALRHASA 403
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L +++ EL+AEDLR L I G +++DLL IFS FCIGK
Sbjct: 404 SLEH-----GRAQLTLAGAGELLAEDLRQAQHALGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|218931079|ref|YP_002348954.1| tRNA modification GTPase TrmE [Yersinia pestis CO92]
gi|21363009|sp|Q8Z9U2.1|MNME_YERPE RecName: Full=tRNA modification GTPase MnmE
gi|115349690|emb|CAL22671.1| putative thiophene and furan oxidation protein [Yersinia pestis
CO92]
Length = 454
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 282/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ I+ ATPPGRGGVGI+R+SG+ + V K K PR+A Y F + +
Sbjct: 1 MSTTDTIVAQATPPGRGGVGILRVSGRAASEVAHAVLGKLPK---PRYADYLPFKDVDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ +YF P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 58 TLDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILAL---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS I+ L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSARIHQLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L ++ + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ + N +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAN-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D T+ + + P +P+ V NK D +G +
Sbjct: 287 ERAWNEIEQADRVLFMVDGTTTDATEPAAIWPEFMARLPATLPITVVRNKADITGETLGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N + I LSA GI+LLR+ L + T E +LAR H+ +L A +L
Sbjct: 347 TKVNGHSLIRLSARTGEGIDLLRDHLKQSMGFTSNTEGG-FLARRPHLQALETAARHL-- 403
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
I+ Q + EL+AE+LR + LS I G+ +++DLL IFS FCIGK
Sbjct: 404 -IQGHEQLVSAYAG--ELLAEELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454
>gi|227113121|ref|ZP_03826777.1| tRNA modification GTPase TrmE [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 454
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 279/474 (58%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ I+ ATPPGRGGVGI+R+SG+ + V K K PR A Y F N
Sbjct: 1 MSNTDTIVAQATPPGRGGVGILRISGQAAADVAHAVLGKLPK---PRHADYLPFRDANGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + +R+A PGEF++R
Sbjct: 58 TLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLQRILTLST---VRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS IN L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGVFSTRINQLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + + +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNGVMADLDAVRAEAHQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D + T+ ++ + + P +P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTQATEPEQIWPEFMARLPKTLPITVVRNKADVTGETLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N + I LSA GI+ LR+ L + T E +LAR RH+ +L A +L
Sbjct: 347 EEVNTHSLIRLSARTGEGIDTLRDHLKQSMGFTSNTEGG-FLARRRHLQALELAAQHL-- 403
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
I + + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 404 ---IQGKEQLVSAYAGELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|238753998|ref|ZP_04615357.1| tRNA modification GTPase mnmE [Yersinia ruckeri ATCC 29473]
gi|238707750|gb|EEQ00109.1| tRNA modification GTPase mnmE [Yersinia ruckeri ATCC 29473]
Length = 454
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 286/474 (60%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ I+ ATPPGRGGVGI+R+SG+ + ++ + V K K PR+A Y F +
Sbjct: 1 MSATDTIVAQATPPGRGGVGILRVSGRAVAAVAQAVLGKLPK---PRYADYLPFRDTDGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+V+YF P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 58 TLDQGIVLYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILAL---PGLRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS I+ L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSIRIHQLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L K+ + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEGQLNGVMSDLAKVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D T+ + + P +P+ V NK D + +
Sbjct: 287 ERAWNEIEQADRVLFMVDGTTTDATEPAAIWPEFMARLPATLPITVVRNKADVTDETLGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N + I LSA GI+LLR+ L + T E +LAR RH+ +L A +L
Sbjct: 347 TEVNGYSLIRLSARTGDGIDLLRDHLKQSMGFTSNTEGG-FLARRRHLQALEMAAQHL-- 403
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ Q N+ EL+AE+LR + LS I G+ +++DLL IFS FCIGK
Sbjct: 404 -VQGKEQLVSNYAG--ELLAEELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454
>gi|312174334|emb|CBX82587.1| tRNA modification GTPase trmE [Erwinia amylovora ATCC BAA-2158]
Length = 474
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 195/474 (41%), Positives = 282/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
+ + I+ ATPPGRGGVGI+R+SG + +++ K K PR A Y F + +
Sbjct: 21 MNHSDTIVAQATPPGRGGVGILRVSGNKAARVAQLLLGKLPK---PRHADYLPFCDADGS 77
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F PHS+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 78 TLDQGIALWFPGPHSFTGEDVLELQGHGGPVILDLLLKRILSL---PGLRIANPGEFSER 134
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS IN L++ L +LR +E +
Sbjct: 135 AFLNDKLDLAQAEAIADLIDASSEQAARSAVNSLQGVFSTRINHLVEALTHLRIYVEAAI 194
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 195 DFPDEEIDF-LSDGKIEAQLHQVIADLDAVRSEARQGSLLREGMKVVIAGRPNAGKSSLL 253
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + IQI+ I DTAG +++ +EVE+IGI
Sbjct: 254 NALAGREAAIVTDIAGTTRDVLREHIQIDGMPLHIIDTAG-------LREASDEVERIGI 306
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D TD + I P +PV V NK D +G + I
Sbjct: 307 ERAWHEIEQADHVLFMVDGTTTDATDPAEIWPDFIARLPETLPVTVVRNKADITGEIREI 366
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N I LSA GI LRN L + ++E +LAR RH+ +L A +L
Sbjct: 367 SEVNGHLLIRLSARTGEGIENLRNHLKLSMGWHGSMEGG-FLARRRHLQALELAATHLQQ 425
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ +++DLL IFS FCIGK
Sbjct: 426 GKHQLLAARAG-----ELLAEELRMAQQALSEITGEFSSDDLLGRIFSSFCIGK 474
>gi|418295062|ref|ZP_12906936.1| tRNA modification GTPase TrmE [Pseudomonas stutzeri ATCC 14405 =
CCUG 16156]
gi|379066419|gb|EHY79162.1| tRNA modification GTPase TrmE [Pseudomonas stutzeri ATCC 14405 =
CCUG 16156]
Length = 455
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 187/476 (39%), Positives = 278/476 (58%), Gaps = 25/476 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M I +AT PGRGGVGI+R+SG +I + T ++ PR A Y +F +
Sbjct: 1 MSPAGDTIAAVATAPGRGGVGIVRVSGPRAKAIAITL---TGREPTPRHAHYGAFHADDG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+ID+GL+++F PHS+TGEDV+EL GHGGP+++ MLL C+E+G +RLA PGEF++
Sbjct: 58 EVIDEGLLLFFPGPHSFTGEDVLELQGHGGPVVMDMLLQRCVELG----VRLARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G+FS+ ++ L +KLI LR +E +
Sbjct: 114 RAFLNDKLDLAQAEAIADLIEASSTQAARNAVRSLQGEFSRHVHQLTEKLIQLRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + + + + +L ++ KL ++++ + AL+R G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDFLADGH-VLAQLEDVRAKLSTVLREASQGALLREGMTVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D ++VE+IG
Sbjct: 233 LNALAGREAAIVTDIAGTTRDVLREHILIDGMPLHVVDTAGLRDTE-------DQVERIG 285
Query: 301 IERTWVELKNSDIIIYVQDA---RYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
++R + +D I+ + DA + + + I P + + NK D SG +
Sbjct: 286 VQRALSAIGEADRILLMVDASSPEAENPSALWPEFIDCSPAPDRITLIRNKADLSGEAIS 345
Query: 358 IN-YKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYL 416
+ K+ + + A G++LLR L + QT E S + AR RH+ +L A YL
Sbjct: 346 LKVAKDGQVTLSICARSGDGVDLLREHLKQCMGYEQTAEGS-FSARRRHLDALRLAEQYL 404
Query: 417 SCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 405 QH-----GHAQLTLAGAGELLAEDLRLAQQALGEITGAFSSDDLLGRIFSSFCIGK 455
>gi|404380139|ref|ZP_10985178.1| tRNA modification GTPase mnmE [Simonsiella muelleri ATCC 29453]
gi|294482301|gb|EFG29997.1| tRNA modification GTPase mnmE [Simonsiella muelleri ATCC 29453]
Length = 457
Score = 348 bits (894), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 208/480 (43%), Positives = 288/480 (60%), Gaps = 31/480 (6%)
Query: 1 MLTKNSPIIG-IATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKN 59
M T +SP I IAT GRGGVG+IRLSGK+L V+ + K KPR A Y+ F +
Sbjct: 1 MNTTHSPTIAAIATASGRGGVGVIRLSGKDLLPFVQRITGG--KIPKPRTALYTDFLDAH 58
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFT 119
ID GL++YF AP S+TGEDVIEL GHGG I+L MLL CLE+G R+A GEFT
Sbjct: 59 GKTIDNGLLLYFAAPASFTGEDVIELQGHGGQIVLQMLLQRCLELGA----RIAEAGEFT 114
Query: 120 KRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEF 179
KRAFLNNK+DL Q E++ DLI+AS++ AA+ A+ SL G+FS I+ L++ LI LR L+E
Sbjct: 115 KRAFLNNKIDLAQAESVADLIDASSQQAARMAIRSLKGEFSNQIHQLVEDLITLRMLVEA 174
Query: 180 SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
+ DFPEE+ + L D +L ++ +L I+ ++ A++R G+ VVL+G PNVGKSS
Sbjct: 175 TLDFPEEDIDF-LQSADAKGKLRALQNQLAHILTNAQQGAILREGMTVVLVGAPNVGKSS 233
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N+L G DVAIVT IAGTTRD + + I ++ + DTAG+ N + VEKI
Sbjct: 234 LLNALAGDDVAIVTDIAGTTRDTVREQITLDGIPIHMIDTAGLRQTN-------DIVEKI 286
Query: 300 GIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ--KN 357
GIER+ ++N+DI + + D + + ++I+ P N+ I + NKID Q +
Sbjct: 287 GIERSEKAVQNADIALILIDPD-NGVNETTREILFRLPENLKRIEIQNKIDLRNEQPERV 345
Query: 358 INYKNNIAN-----IYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEA 412
N ++ + I LSA G++LL+ LL I Q +LAR RH+++L A
Sbjct: 346 DNLSGSLKSGADTLIKLSAKTGAGLDLLKQALLAQI-GWQGESEGLFLARTRHLNALETA 404
Query: 413 NYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ L+ A + +EL+AE LR S I G+ T +DLL IFS+FCIGK
Sbjct: 405 QFELNLAADCGHH-------QIELLAEHLRLAQMACSEITGEFTADDLLGVIFSRFCIGK 457
>gi|90413741|ref|ZP_01221729.1| tRNA modification GTPase [Photobacterium profundum 3TCK]
gi|90325210|gb|EAS41707.1| tRNA modification GTPase [Photobacterium profundum 3TCK]
Length = 455
Score = 348 bits (894), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 190/468 (40%), Positives = 287/468 (61%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ ATPPGRGGVGIIR+SG E+ ++LK R+A Y F ++ +D+G+
Sbjct: 8 IVAQATPPGRGGVGIIRVSGPKAK---EVALAVAGRELKTRYAEYLPFKNEDGTALDQGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++FKAP+S+TGEDV+EL GHGGP+++ M++ L++ G+R A PGEF++RAF+N+K
Sbjct: 65 ALFFKAPNSFTGEDVLELQGHGGPVLIDMMIRRILKLD---GIRPARPGEFSERAFMNDK 121
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AAKSA SL G FS +N L++ +I+LR +E + DFPEE
Sbjct: 122 LDLTQAEAIADLIDASSEEAAKSAFKSLQGVFSTKVNELVEAVIHLRIYVEAAIDFPEEE 181
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ N+L I L + ++ + ++IR G+ VV+ G+PN GKSSL N+L G
Sbjct: 182 IDF-LSDGKVSNDLHAIIDTLKAVRREANQGSIIREGMKVVIAGRPNAGKSSLLNALSGK 240
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
D AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E
Sbjct: 241 DSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWEE 293
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D TD I+ P ++ + + NK++ +G I + NN
Sbjct: 294 IQQADRVLFMVDGTTTNDTDPKDIWPDFIERLPASMGLTVIRNKVELTGEAAGICHVNNP 353
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
+ LSA G++ LR L + + + T E ++AR RH+ +L +A +L +I
Sbjct: 354 TLVRLSALTGEGVDSLREHLKECMGFSGTTEGG-FMARRRHLEALEQAAQHL----EIGK 408
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + F E++AE+LR + LS I G+ T++DLL IF+ FCIGK
Sbjct: 409 EQLEGFMAG-EILAEELRLAQQYLSEITGEFTSDDLLGRIFTSFCIGK 455
>gi|322835121|ref|YP_004215148.1| tRNA modification GTPase TrmE [Rahnella sp. Y9602]
gi|384260344|ref|YP_005404278.1| tRNA modification GTPase TrmE [Rahnella aquatilis HX2]
gi|321170322|gb|ADW76021.1| tRNA modification GTPase TrmE [Rahnella sp. Y9602]
gi|380756320|gb|AFE60711.1| tRNA modification GTPase TrmE [Rahnella aquatilis HX2]
Length = 454
Score = 348 bits (893), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 188/474 (39%), Positives = 289/474 (60%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ + II ATPPGRGGVGI+R+SG+ + + V K K PR+A Y F + +
Sbjct: 1 MSTSDTIIAQATPPGRGGVGILRISGRAARDVAQAVLGKLPK---PRYADYLPFQDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL + + +R+A PGEF++R
Sbjct: 58 TLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIIALEN---VRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS I+ L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSNRIHHLVEALTHLRIFVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAKLNTVMGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I ++ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHLDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHT---DFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D+++++ D + T D + + P ++P++ V NK D +G
Sbjct: 287 ERAWNEIEQADLVLFMVDGTTTEATEPADIWPEFMARLPASLPIVVVRNKADITGEALGQ 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N + I LSA G++LLR+ L ++ +E +LAR RH+ +L +A +L
Sbjct: 347 TEVNGHSLIRLSARTGDGVDLLRDHLKQVMGFNHNMEGG-FLARRRHLQALEQAAQHL-- 403
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ +Q + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 404 -VQGKDQLLGAWAG--ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|253690652|ref|YP_003019842.1| tRNA modification GTPase TrmE [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|259495843|sp|C6DK97.1|MNME_PECCP RecName: Full=tRNA modification GTPase MnmE
gi|251757230|gb|ACT15306.1| tRNA modification GTPase TrmE [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 454
Score = 348 bits (893), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 191/474 (40%), Positives = 281/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ I+ ATPPGRGGVGI+R+SG+ + + V K K PR A Y F N
Sbjct: 1 MSNTDTIVAQATPPGRGGVGILRVSGRAAAEVAQAVLGKLPK---PRHADYLPFRDANGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + +R+A PGEF++R
Sbjct: 58 TLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPN---VRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGVFSTRVNQLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ ++L + L + + + +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIESQLNGVMADLDAVRAEAHQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D + T+ ++ + + P +P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTQATEPEQIWPEFMARLPKTLPITVVRNKADVTGETLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N + I LSA G++ LR+ L + T E +LAR RH+ +L A +L
Sbjct: 347 EDVNTHSLIRLSARTGDGVDTLRDHLKQSMGFTSNTEGG-FLARRRHLQALELAAQHL-- 403
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
I + + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 404 ---IQGKEQLVSAYAGELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|403060647|ref|YP_006648864.1| tRNA modification GTPase TrmE [Pectobacterium carotovorum subsp.
carotovorum PCC21]
gi|402807973|gb|AFR05611.1| tRNA modification GTPase TrmE [Pectobacterium carotovorum subsp.
carotovorum PCC21]
Length = 454
Score = 348 bits (893), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 279/474 (58%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ I+ ATPPGRGGVGI+R+SG+ + V K K PR A Y F N
Sbjct: 1 MSNTDTIVAQATPPGRGGVGILRISGQAAADVAHAVLGKLPK---PRHADYLPFRDANGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + +R+A PGEF++R
Sbjct: 58 TLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLQRILTLSN---VRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS IN L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGVFSTRINQLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + + +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNGVMADLDAVRAEAHQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D + T+ ++ + + P +P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTQATEPEQIWPEFMARLPKTLPITVVRNKADVTGETLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N + I LSA GI+ LR+ L + T E +LAR RH+ +L A +L
Sbjct: 347 EEVNTHSLIRLSARTGEGIDTLRDHLKQSMGFTSNTEGG-FLARRRHLQALELAAQHL-- 403
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
I + + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 404 ---IQGKEQLVSAYAGELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|418022938|ref|ZP_12661924.1| tRNA modification GTPase mnmE [Shewanella baltica OS625]
gi|353537940|gb|EHC07496.1| tRNA modification GTPase mnmE [Shewanella baltica OS625]
Length = 458
Score = 348 bits (893), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 195/474 (41%), Positives = 282/474 (59%), Gaps = 35/474 (7%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG + V K R+A Y F + +ID+G+
Sbjct: 11 IVAQATAPGRGGVGIIRISGDKASDVAMAVLGHLPK---TRYADYCDFKSASGQVIDQGI 67
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++FK P+S+TGEDV+EL GHGG I+L ML+ +E+G G+R+A PGEF+++AF+N+K
Sbjct: 68 ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVG---GIRIAKPGEFSEQAFMNDK 124
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AAKSA+ SL G+FSK ++ L+D++ NLR +E + DFP+E
Sbjct: 125 LDLTQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPDEE 184
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ N L KI KL + K+ ++IR G+ VV+ G+PN GKSSL N+L G
Sbjct: 185 VDF-LSDGKIANALYKIIDKLDLVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGK 243
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D N + VE+IGIER W E
Sbjct: 244 ESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTN-------DTVEQIGIERAWNE 296
Query: 308 LKNSDIIIYVQD----ARYDKHT---DFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
+ ++D ++++ D A D HT DF + P N+ V + NK D +G +
Sbjct: 297 INSADRVLFMVDGTTTAAVDPHTIWPDF----VDRLPSNLGVTVIRNKADLTGEDLMMTE 352
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
+ + +SA +G+ L+ L L+ +E ++AR RH+ +L A +L
Sbjct: 353 EQGYSVYRISAKTGLGVEELKQHLKSLMGYQSNLEGG-FIARRRHLEALELAAGHLQLG- 410
Query: 421 KIINQSEKNFEKNL--ELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ E L EL+AE+LR C LS I G+ T++DLL IFS FCIGK
Sbjct: 411 ------KEQLEVYLAGELLAEELRMCQLALSEITGRFTSDDLLGKIFSSFCIGK 458
>gi|333909890|ref|YP_004483476.1| tRNA modification GTPase mnmE [Marinomonas posidonica IVIA-Po-181]
gi|333479896|gb|AEF56557.1| tRNA modification GTPase mnmE [Marinomonas posidonica IVIA-Po-181]
Length = 459
Score = 348 bits (893), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 198/475 (41%), Positives = 283/475 (59%), Gaps = 26/475 (5%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
+T I AT PGRGGVGIIRLSG +I + + + PR+A Y F +
Sbjct: 7 VTDQDTIAAQATAPGRGGVGIIRLSGPRSLAIAKQIIGF---EPTPRYAHYVPFKQADGE 63
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D GL IYF P+S+TGEDV EL GHGGP+I+ MLLS C+ S+G RLA PGEF++R
Sbjct: 64 QLDMGLAIYFPGPNSFTGEDVFELQGHGGPVIMDMLLSHCV----SLGARLARPGEFSER 119
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AF+N+K+DL Q EAI DLI++++E AAK A+ SL G FSK ++ L++ LI+LR +E +
Sbjct: 120 AFMNDKMDLTQAEAIADLIDSTSEQAAKCALRSLQGAFSKRVDELVEALIHLRIYVEAAI 179
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFPEE + I +EL +I+ KL ++++ + ALIR G+NVV+ G+PN GKSSL
Sbjct: 180 DFPEEEIDFI-GDGKVASELDEIQTKLADVLKEANQGALIREGMNVVIAGRPNAGKSSLL 238
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT+I GTTRD + + I ++ I DTAG+ D + +EVE+IGI
Sbjct: 239 NALSGKESAIVTNIEGTTRDVLREHIHLDGMPLHIIDTAGLRD-------SPDEVERIGI 291
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNI----PVIYVWNKIDYSGHQKN 357
+R W E++ +D I+ + D++ D K+I F + + + NK+D + Q
Sbjct: 292 QRAWDEIQKADRILMMVDSQSIDSKD-PKEIWPEFMAKLGNQNAITVIRNKVDLTKDQIG 350
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
+ + I LSA GI L + L ++ T E ++AR RHI +LN+AN +L
Sbjct: 351 LEDHQGVPVISLSAKTGDGIQHLTDHLKTVMGFDSTTEGG-FIARRRHIEALNKANRFLE 409
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
N+ + EL+AEDL+ + LS I G T++DLL IF FCIGK
Sbjct: 410 AG----NEQLHGYGAG-ELLAEDLKEAQQALSEITGAFTSDDLLGRIFGSFCIGK 459
>gi|227328550|ref|ZP_03832574.1| tRNA modification GTPase TrmE [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 454
Score = 348 bits (893), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 279/474 (58%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ I+ ATPPGRGGVGI+R+SG+ + V K K PR A Y F N
Sbjct: 1 MSNTDTIVAQATPPGRGGVGILRISGQAAADVAHTVLGKLPK---PRHADYLPFRDANGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + +R+A PGEF++R
Sbjct: 58 TLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLQRILTLSN---VRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS IN L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGVFSTRINQLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + + +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNGVMADLDAVRAEAHQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D + T+ ++ + + P +P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTQATEPEQIWPEFMARLPKTLPITVVRNKADVTGEALGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N + I LSA GI+ LR+ L + T E +LAR RH+ +L A +L
Sbjct: 347 EDVNTHSLIRLSARTGEGIDTLRDHLKQSMGFTSNTEGG-FLARRRHLQALELAAQHL-- 403
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
I + + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 404 ---IQGKEQLVSAYAGELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|343511665|ref|ZP_08748820.1| tRNA modification GTPase TrmE [Vibrio scophthalmi LMG 19158]
gi|343515737|ref|ZP_08752787.1| tRNA modification GTPase TrmE [Vibrio sp. N418]
gi|342797400|gb|EGU33050.1| tRNA modification GTPase TrmE [Vibrio scophthalmi LMG 19158]
gi|342797693|gb|EGU33334.1| tRNA modification GTPase TrmE [Vibrio sp. N418]
Length = 453
Score = 348 bits (893), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 197/470 (41%), Positives = 284/470 (60%), Gaps = 27/470 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVE-IVCKKTKKQLKPRFATYSSFFCKNNNIIDKG 66
I+ AT PGRGGVGIIR+SG + E + + K L+PR+A Y F + +D+G
Sbjct: 6 IVAQATAPGRGGVGIIRVSG----PLAEKVALEVAGKALRPRYAEYLPFCDEAGKQLDQG 61
Query: 67 LVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNN 126
+ ++F PHS+TGEDV+EL GHGGP+++ ML+ L+I G+R A PGEF++RAFLN+
Sbjct: 62 IALFFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILKID---GIRTARPGEFSERAFLND 118
Query: 127 KLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEE 186
KLDL Q EAI DLI+AS+E AAKSA+ SL G FS+ IN L+D LI LR +E + DFPEE
Sbjct: 119 KLDLAQAEAIADLIDASSEEAAKSALQSLQGAFSQRINTLVDSLIYLRIYVEAAIDFPEE 178
Query: 187 NQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVG 246
+ + + +L I L + ++ + +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 179 EIDFLADGK-VSADLQAIIDNLAAVRKEANQGSIMREGMKVVIAGRPNAGKSSLLNALSG 237
Query: 247 SDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWV 306
+ AIVT IAGTTRD + + I I+ I DTAG +++ +EVEKIGIER W
Sbjct: 238 KESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVEKIGIERAWD 290
Query: 307 ELKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQKNINYKN 362
E+K +D ++++ D TD K+I +F P NI + + NK D +G I + N
Sbjct: 291 EIKQADRVLFMVDGTTTDATD-PKEIWPDFVDRLPDNIGMTVIRNKADQTGEDLGICHVN 349
Query: 363 NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKI 422
+ I LSA G++ LRN L + + E ++AR RH+ +L +A +L
Sbjct: 350 SPTLIRLSAKTGQGVDALRNHLKECMGFAGGHEGG-FMARRRHLEALEKAADHLD----- 403
Query: 423 INQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
I Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 404 IGQQQLEGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|424810933|ref|ZP_18236267.1| tRNA modification GTPase TrmE [Vibrio mimicus SX-4]
gi|342321944|gb|EGU17740.1| tRNA modification GTPase TrmE [Vibrio mimicus SX-4]
Length = 453
Score = 348 bits (893), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 192/468 (41%), Positives = 279/468 (59%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT GRGGVGIIR+SG + + V +T L+PR+A Y F +N +D+G+
Sbjct: 6 IVAQATALGRGGVGIIRVSGPLAAHVAQTVTGRT---LRPRYAEYLPFTDENGQQLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F PHS+TGEDV+EL GHGGP+++ ML+ L+I G+R A PGEF++RAFLN+K
Sbjct: 63 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIN---GVRPARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FSK I+ L++ LI+LR +E + DFPEE
Sbjct: 120 MDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + + VEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DAVEKIGIERAWEE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D + TD + + P NI + + NK D +G I + N
Sbjct: 292 IRQADRVLFMVDGTTTEATDPQEIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQP 351
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G++ LR L + + E ++AR RH+ +L A +L I
Sbjct: 352 TLIRLSAKTGQGVDALRQHLKECMGFAGNQEGG-FMARRRHLDALERAAEHLD-----IG 405
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 406 QQQLEGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|261346747|ref|ZP_05974391.1| tRNA modification GTPase TrmE [Providencia rustigianii DSM 4541]
gi|282565147|gb|EFB70682.1| tRNA modification GTPase TrmE [Providencia rustigianii DSM 4541]
Length = 454
Score = 348 bits (893), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 197/472 (41%), Positives = 289/472 (61%), Gaps = 25/472 (5%)
Query: 5 NSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIID 64
N I+ ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +++D
Sbjct: 4 NDTIVAQATPPGRGGVGILRVSGPKAALVAETVLGKLPK---PRYAEYLPFRDVDGSVLD 60
Query: 65 KGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFL 124
+G+ IYF P+S+TGEDV+EL GHGGP+IL +LL L IG +R+A PGEF++RAFL
Sbjct: 61 QGIAIYFPGPNSFTGEDVLELQGHGGPVILDLLLRRILTIG---AIRIANPGEFSERAFL 117
Query: 125 NNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFP 184
N+KLDL Q EAI DLI+AS+E AA+SAM SL G FS I+ L++ L +LR +E + DFP
Sbjct: 118 NDKLDLAQAEAIADLIDASSEQAARSAMNSLQGAFSSHIHQLVEALTHLRIYVEAAIDFP 177
Query: 185 EENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSL 244
+E + L+ +L ++ L ++ Q ++ +L+R G+ VV+ G+PN GKSSL N+L
Sbjct: 178 DEEIDF-LSDGKIEAKLNEVVDDLEQVRSQARQGSLLREGMKVVIAGRPNAGKSSLLNAL 236
Query: 245 VGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304
G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER
Sbjct: 237 AGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERA 289
Query: 305 WVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYK 361
W E++ +D ++++ D+ T+ + + + P +PV + NK D +G
Sbjct: 290 WKEIEQADRVLFMVDSTTTDATEPQEIWPEFMARLPETLPVTVIRNKADKTGESIEFVAD 349
Query: 362 NNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI- 420
I LSA + GI+LLR+ L + + + E +LAR RH+ +LN A +L+
Sbjct: 350 VRYPLIRLSAREEKGIDLLRDHLKETMGFSGNTEGG-FLARRRHLQALNNAATHLAQGYD 408
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++N ++ EL+AE+LR +LS I G+ T++DLL IFS FCIGK
Sbjct: 409 QLVNA------RSGELLAEELRLAQLELSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|160877621|ref|YP_001556937.1| tRNA modification GTPase TrmE [Shewanella baltica OS195]
gi|378710831|ref|YP_005275725.1| tRNA modification GTPase TrmE [Shewanella baltica OS678]
gi|189036207|sp|A9KX19.1|MNME_SHEB9 RecName: Full=tRNA modification GTPase MnmE
gi|160863143|gb|ABX51677.1| tRNA modification GTPase TrmE [Shewanella baltica OS195]
gi|315269820|gb|ADT96673.1| tRNA modification GTPase TrmE [Shewanella baltica OS678]
Length = 453
Score = 348 bits (892), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 195/474 (41%), Positives = 282/474 (59%), Gaps = 35/474 (7%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG + V K R+A Y F + +ID+G+
Sbjct: 6 IVAQATAPGRGGVGIIRISGDKASDVAMAVLGHLPK---TRYADYCDFKSASGQVIDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++FK P+S+TGEDV+EL GHGG I+L ML+ +E+G G+R+A PGEF+++AF+N+K
Sbjct: 63 ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVG---GIRIAKPGEFSEQAFMNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AAKSA+ SL G+FSK ++ L+D++ NLR +E + DFP+E
Sbjct: 120 LDLTQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPDEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ N L KI KL + K+ ++IR G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 VDF-LSDGKIANALYKIIDKLDLVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D N + VE+IGIER W E
Sbjct: 239 ESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTN-------DTVEQIGIERAWNE 291
Query: 308 LKNSDIIIYVQD----ARYDKHT---DFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
+ ++D ++++ D A D HT DF + P N+ V + NK D +G +
Sbjct: 292 INSADRVLFMVDGTTTAAVDPHTIWPDF----VDRLPSNLGVTVIRNKADLTGEDLMMTE 347
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
+ + +SA +G+ L+ L L+ +E ++AR RH+ +L A +L
Sbjct: 348 EQGYSVYRISAKTGLGVEELKQHLKSLMGYQSNLEGG-FIARRRHLEALELAAGHLQLG- 405
Query: 421 KIINQSEKNFEKNL--ELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ E L EL+AE+LR C LS I G+ T++DLL IFS FCIGK
Sbjct: 406 ------KEQLEVYLAGELLAEELRMCQLALSEITGRFTSDDLLGKIFSSFCIGK 453
>gi|352105521|ref|ZP_08960836.1| tRNA modification GTPase TrmE [Halomonas sp. HAL1]
gi|350598394|gb|EHA14514.1| tRNA modification GTPase TrmE [Halomonas sp. HAL1]
Length = 456
Score = 348 bits (892), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 190/468 (40%), Positives = 273/468 (58%), Gaps = 25/468 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I +ATPPGRGGVGIIR+SG +I E + PR+A Y F +IID+G+
Sbjct: 11 ITALATPPGRGGVGIIRVSGPACRAIAEAMLGHCPS---PRYAHYGPF-QGAESIIDEGI 66
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+ F PHS+TGEDV+EL GHGGPII+ MLL C+ ++G RLA PGEF++RAFLN+K
Sbjct: 67 ALLFNGPHSFTGEDVLELQGHGGPIIMDMLLERCV----ALGARLARPGEFSERAFLNDK 122
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++ SAA++A+ SL G+FSK ++ L+ +LI LR +E + DFPEE
Sbjct: 123 LDLAQAEAIADLIDATSRSAAENAVRSLQGEFSKRVSALVQRLIELRVYVEAAIDFPEEE 182
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + + L +++ L + Q + AL+R G++VV+ G+PN GKSSL N+L
Sbjct: 183 IDFLADGH-VAQHLSSVQQALSDVRQAAGQGALMREGMSVVIAGRPNAGKSSLLNALTEQ 241
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
D AIVT IAGTTRD + + I I+ I DTAG+ D + VEKIG+ R W E
Sbjct: 242 DTAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDTP-------DAVEKIGVARAWAE 294
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++ + DA TD + + P + V NKID S ++
Sbjct: 295 IEKADRVLLLVDASTTASTDPMAIWPEFVARLPDQQRLTLVRNKIDTSAEPPGLDLSTTP 354
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
+ LSA G++ L+ L D++ T E + AR RH+ +L+ A L+
Sbjct: 355 PTVRLSAKTGEGVDNLKAHLKDIMGFAATTEGR-FSARRRHLDALDRAMAALTT-----G 408
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ + EL+AEDLR + L I G+ + +DLL IF FCIGK
Sbjct: 409 RAQLDGYGAGELLAEDLRDTQQALGEITGEFSADDLLGEIFGSFCIGK 456
>gi|322515697|ref|ZP_08068669.1| tRNA modification GTPase TrmE, partial [Actinobacillus ureae ATCC
25976]
gi|322118229|gb|EFX90524.1| tRNA modification GTPase TrmE [Actinobacillus ureae ATCC 25976]
Length = 493
Score = 348 bits (892), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 197/472 (41%), Positives = 289/472 (61%), Gaps = 31/472 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKT-KKQLKPRFATYSSFFCKNNNIIDKG 66
I+ ATP GRGGVGI+R+SG + + V K+ K+LKPR A Y F ++ ++D+G
Sbjct: 46 IVAQATPIGRGGVGILRISG----PLAQEVAKEVLGKELKPRLANYLPFKDQDGTVLDQG 101
Query: 67 LVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNN 126
+ ++FKAP+S+TGEDV+EL GHGG +IL +LL L + G+R+A GEF+++AFLN+
Sbjct: 102 IALFFKAPNSFTGEDVLELQGHGGQMILDILLKRILAVK---GVRIARAGEFSEQAFLND 158
Query: 127 KLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEE 186
KLDL Q EAI DLI+A++E AA+SA+ SL G+FS IN L+D +I LRT +E + DFP+E
Sbjct: 159 KLDLAQAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDE 218
Query: 187 NQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVG 246
+ L L I ++L + ++ K+ A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 219 EIDF-LADGKIEGHLNDIIRQLNGVRKEAKQGAILREGMKVVIAGRPNAGKSSLLNALAG 277
Query: 247 SDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWV 306
D AIVT+IAGTTRD + + I I+ I DTAG +++ +EVE+IGI+R W
Sbjct: 278 RDAAIVTNIAGTTRDVLCEHIHIDGMPLHIIDTAG-------LREASDEVERIGIQRAWD 330
Query: 307 ELKNSDIIIYVQDARYDKHTDFDKK---IIKNFPMNIPVIYVWNKIDYSGHQKNINYKNN 363
E++ +D ++ + D+ F + + P NIPV + NK+D S + + +
Sbjct: 331 EIEQADHVLLMIDSTEQTAEAFKTEWADFLAKLPQNIPVTVIRNKVDLSSEAEGLQELDG 390
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP---YLARERHIHSLNEANYYLSCAI 420
I LSA ++G++LLR L +K+ +SS +LAR RH+ +L A +L
Sbjct: 391 FTLIRLSAQTKVGVDLLREHL----KKSMGYQSSTEGGFLARRRHLQALETAAEHLERGH 446
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ Q EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 447 IQLTQFFAG-----ELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 493
>gi|258622951|ref|ZP_05717966.1| tRNA modification GTPase [Vibrio mimicus VM573]
gi|258584734|gb|EEW09468.1| tRNA modification GTPase [Vibrio mimicus VM573]
Length = 464
Score = 348 bits (892), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 192/468 (41%), Positives = 279/468 (59%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT GRGGVGIIR+SG + + V +T L+PR+A Y F +N +D+G+
Sbjct: 17 IVAQATALGRGGVGIIRVSGPLAAHVAQTVTGRT---LRPRYAEYLPFTDENGQQLDQGI 73
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F PHS+TGEDV+EL GHGGP+++ ML+ L+I G+R A PGEF++RAFLN+K
Sbjct: 74 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIN---GVRPARPGEFSERAFLNDK 130
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FSK I+ L++ LI+LR +E + DFPEE
Sbjct: 131 MDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE 190
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 191 IDF-LADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 249
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + + VEKIGIER W E
Sbjct: 250 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DAVEKIGIERAWEE 302
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D + TD + + P NI + + NK D +G I + N
Sbjct: 303 IRQADRVLFMVDGTTTEATDPQEIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQP 362
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G++ LR L + + E ++AR RH+ +L A +L I
Sbjct: 363 TLIRLSAKTGQGVDALRQHLKECMGFAGNQEGG-FMARRRHLDALERAAEHLD-----IG 416
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 417 QQQLEGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 464
>gi|448746076|ref|ZP_21727746.1| tRNA modification GTPase TrmE [Halomonas titanicae BH1]
gi|445566804|gb|ELY22910.1| tRNA modification GTPase TrmE [Halomonas titanicae BH1]
Length = 462
Score = 348 bits (892), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 190/468 (40%), Positives = 272/468 (58%), Gaps = 25/468 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I +ATPPGRGGVGIIR+SG I + + PR+A Y F +I D+G+
Sbjct: 17 IAALATPPGRGGVGIIRVSGPACREIAQAMVGHCPA---PRYAHYGPFQGAEGSI-DEGI 72
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F PHS+TGEDV+EL GHGGPII+ MLL C+ +G RLA PGEF++RAFLN+K
Sbjct: 73 ALFFNGPHSFTGEDVLELQGHGGPIIMDMLLERCV----VLGARLARPGEFSERAFLNDK 128
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++ SAA++A+ SL G+FSK ++ L+++LI LR +E + DFPEE
Sbjct: 129 LDLAQAEAIADLIDATSRSAAENAVRSLQGEFSKRVSALVERLIELRVYVEAAIDFPEEE 188
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + + L +++ L + Q + AL+R G++VV+ G+PN GKSSL N+L
Sbjct: 189 IDFLADGH-VAQHLSSVQQALSDVRQAAGQGALLREGMSVVIAGRPNAGKSSLLNALTEQ 247
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
D AIVT IAGTTRD + + I I+ I DTAG+ D + VEKIG+ R W E
Sbjct: 248 DTAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDTP-------DAVEKIGVARAWAE 300
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++ + DA TD + + P + V NKID S I+ I
Sbjct: 301 IEKADRVLLLVDASTTTSTDPMAIWPEFVARLPDQSRLTLVRNKIDTSAEPAGIDLSTTI 360
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
+ LSA G++ L+ L D++ T E + AR RH+ +L+ A L
Sbjct: 361 PIVRLSAKTGTGVDNLKAHLKDVMGFAATTEGR-FSARRRHLDALDRAMAALDT-----G 414
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ + EL+AEDLR + L I G+ + +DLL IF FCIGK
Sbjct: 415 RAQLDGYGAGELLAEDLRDAQQALGEITGEFSADDLLGEIFGSFCIGK 462
>gi|421615452|ref|ZP_16056476.1| tRNA modification GTPase TrmE [Pseudomonas stutzeri KOS6]
gi|409782525|gb|EKN62080.1| tRNA modification GTPase TrmE [Pseudomonas stutzeri KOS6]
Length = 455
Score = 347 bits (891), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 189/476 (39%), Positives = 278/476 (58%), Gaps = 25/476 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M I +AT PGRGGVGI+R+SG +I + + ++ PR A Y +F +
Sbjct: 1 MSPARDTIAAVATAPGRGGVGIVRVSGPRAKAIAITL---SGREPTPRHAHYGAFHADDG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+ID+GL+++F PHS+TGEDV+EL GHGGP++L MLL C+E+G +RLA PGEF++
Sbjct: 58 EVIDEGLLLFFPGPHSFTGEDVLELQGHGGPVVLDMLLQRCVELG----VRLARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G+FS+ ++ L +KLI LR +E +
Sbjct: 114 RAFLNDKLDLAQAEAIADLIEASSAQAARNAVRSLQGEFSRRVHQLTEKLIQLRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + + + + +L ++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDFLADGH-VLAQLDGVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D ++VE+IG
Sbjct: 233 LNALAGREAAIVTDIAGTTRDVLREHILIDGMPLHVVDTAGLRDTE-------DQVERIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
++R + +D I+ + DA + D + + P V V NK D +G
Sbjct: 286 VQRALSAIGEADRILLMVDASAPEAADPLALWPEFLDFTPDPGKVTLVRNKADLTGEPIA 345
Query: 358 INYK-NNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYL 416
+ + + L A GI+LLR L + QT ESS + AR RH+ +L A YL
Sbjct: 346 LRVSADGQVTLNLCARSGEGIDLLREHLKHCMGYEQTAESS-FSARRRHLDALRLAEQYL 404
Query: 417 SCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 405 QH-----GHAQLTLAGAGELLAEDLRLAQQALGEITGAFSSDDLLGRIFSSFCIGK 455
>gi|398853392|ref|ZP_10609995.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM80]
gi|398239923|gb|EJN25621.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM80]
Length = 456
Score = 347 bits (891), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 194/478 (40%), Positives = 283/478 (59%), Gaps = 28/478 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKK-TKKQLKPRFATYSSFFCKN 59
M I +AT GRGGVGI+R+SG + + K + ++LKPR+A Y FF +
Sbjct: 1 MSVPRETIAAVATAQGRGGVGIVRISGP----LASVAAKAISGRELKPRYAHYGPFFTDD 56
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFT 119
++D+GL +YF P+S+TGEDV+EL GHGGPI+L MLL CLE+G RLA PGEF+
Sbjct: 57 KQVLDEGLALYFPGPNSFTGEDVLELQGHGGPIVLDMLLKRCLELG----CRLARPGEFS 112
Query: 120 KRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEF 179
+RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G FS+ ++ L ++LI LR +E
Sbjct: 113 ERAFLNDKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVHNLTEQLIGLRIYVEA 172
Query: 180 SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
+ DFPEE + + + + + L K++ +L ++++ + AL+R+G+ VV+ G+PN GKSS
Sbjct: 173 AIDFPEEEIDFLADGH-VLSMLDKVRDELSTVLREAGQGALLRDGMTVVIAGRPNAGKSS 231
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + + VEKI
Sbjct: 232 LLNALAGREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTD-------DHVEKI 284
Query: 300 GIERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356
G+ER + +D ++ V DA + D + ++ P V + NK D +G
Sbjct: 285 GVERALKAIGEADRVLLVVDATAPEALDPFALWPEFLETRPDPAKVTLIRNKADLTGEAI 344
Query: 357 NI-NYKNNIANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ ++ I LSA S G++LLR+ L + QT ESS + AR RH+ +L A+
Sbjct: 345 VLETSEDGHVTISLSAKSAGEGLDLLRDHLKACMGYEQTSESS-FSARRRHLEALRHASA 403
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L +++ EL+AEDLR L I G +++DLL IFS FCIGK
Sbjct: 404 ALEH-----GRAQLTLAGAGELLAEDLRQAQHSLGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|383936079|ref|ZP_09989509.1| tRNA modification GTPase mnmE [Rheinheimera nanhaiensis E407-8]
gi|383702835|dbj|GAB59600.1| tRNA modification GTPase mnmE [Rheinheimera nanhaiensis E407-8]
Length = 458
Score = 347 bits (891), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 190/479 (39%), Positives = 290/479 (60%), Gaps = 28/479 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M T ++ I +AT PGR GVGIIR+SG + ++ + + + K PR+A Y FF +
Sbjct: 1 MFTTDT-IAALATAPGRAGVGIIRISGPHTKAVAQAILHRIPK---PRYAEYLPFFDSSK 56
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
++D+G+ +YF P+S+TGEDV+EL GHGGP++L MLL L + +R+A PGEF++
Sbjct: 57 QVLDQGIALYFPGPNSFTGEDVLELQGHGGPVLLDMLLKQVLALPN---VRIARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI+AS+E AA+SAM SL G+FS+ I+ L++K+I+LR +E +
Sbjct: 114 RAFLNDKLDLAQAEAIADLIDASSEQAARSAMQSLQGEFSRHIHELVEKVIHLRMYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFP+E + L+ +L +I L + +Q + +++R G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPDEEIDF-LSDGKVAADLAEIIDYLAHVKKQATQGSILREGMKVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ ++VE+IG
Sbjct: 233 LNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREATDQVEQIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFD---KKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
I R W E++ +D ++++ D TD I P + V + NK D +G ++
Sbjct: 286 IARAWQEIEQADRVLFMVDGTTTDATDPHDIWPDFIDRLPEGLGVTVIRNKADLTGELRS 345
Query: 358 INYKNNIAN---IY-LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEAN 413
+ A +Y +SA GI+ LR L I ++E S +LAR RH+ +L+ A
Sbjct: 346 AQPTADTAAKAPVYRISAKTGAGIDALREHLKQCIGFDSSVEGS-FLARRRHLDALDRAA 404
Query: 414 YYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ I Q + + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 405 EHLA-----IGQEQLHSYIAGEILAEELRLTQQHLNEITGEFSSDDLLGRIFSSFCIGK 458
>gi|449144919|ref|ZP_21775730.1| thiophene and furan oxidation protein ThdF [Vibrio mimicus CAIM
602]
gi|449079439|gb|EMB50362.1| thiophene and furan oxidation protein ThdF [Vibrio mimicus CAIM
602]
Length = 453
Score = 347 bits (891), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 192/468 (41%), Positives = 279/468 (59%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT GRGGVGIIR+SG + + V +T L+PR+A Y F +N +D+G+
Sbjct: 6 IVAQATALGRGGVGIIRVSGPLAAHVAQTVTGRT---LRPRYAEYLPFTDENGQQLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F PHS+TGEDV+EL GHGGP+++ ML+ L+I G+R A PGEF++RAFLN+K
Sbjct: 63 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIN---GVRPARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FSK I+ L++ LI+LR +E + DFPEE
Sbjct: 120 MDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + + VEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DAVEKIGIERAWEE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D + TD + + P NI + + NK D +G I + N
Sbjct: 292 IRQADRVLFMVDGTTTEATDPQEIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQP 351
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G++ LR L + + E ++AR RH+ +L A +L I
Sbjct: 352 TLIRLSAKTGQGVDALRQHLKECMGFAGNQEGG-FMARRRHLDALERAAEHLD-----IG 405
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 406 QQQLEGYMAGEILAEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|238921763|ref|YP_002935278.1| tRNA modification GTPase TrmE, putative [Edwardsiella ictaluri
93-146]
gi|238871332|gb|ACR71043.1| tRNA modification GTPase TrmE, putative [Edwardsiella ictaluri
93-146]
Length = 455
Score = 347 bits (891), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 188/477 (39%), Positives = 285/477 (59%), Gaps = 27/477 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M++ + I+ AT PGRGGVGI+R+SG ++ + K K PR+A Y F +
Sbjct: 1 MISSSDTIVAQATAPGRGGVGILRVSGPQAQAVAMALLGKLPK---PRYADYLPFRDHDG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+D+G+ +YF P+S+TGEDV+EL GHGGP+IL +LL L++ + LR+A PGEF++
Sbjct: 58 TPLDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILQLPE---LRIARPGEFSE 114
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+K+DL Q EAI DLI+AS+E AA+SA+ SL G FS I+ L++ LI+LR +E +
Sbjct: 115 RAFLNDKMDLAQAEAIADLIDASSEQAARSAVNSLQGVFSARIHQLVESLIHLRIYVEAA 174
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFP+E + L+ L + +L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 IDFPDEEIDF-LSDGKVEAHLNAVMDELAGVRTEARQGSLLREGMKVVIAGRPNAGKSSL 233
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IG
Sbjct: 234 LNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIG 286
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
IER W E++ +D ++++ D TD I P ++P+ V NK D +G
Sbjct: 287 IERAWQEIERADRVLFMVDGTTTDATDPAAIWPDFIARLPASLPITVVRNKADVTGETLG 346
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
I+ + + LSA G+++LR+ L + +E +LAR RH+ +L++A +L
Sbjct: 347 ISDCDGHTLVRLSARTGAGVDVLRDHLKRSMGFDTRLEGG-FLARRRHLQALDQAALHL- 404
Query: 418 CAIKIINQSEKNFEKNL--ELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + + EL+AE+LR + LS I G+ T++DLL IF+ FCIGK
Sbjct: 405 ------QQGKDQLLGAMAGELLAEELRLAQQSLSEITGEFTSDDLLGRIFTSFCIGK 455
>gi|262167093|ref|ZP_06034808.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae
RC27]
gi|262024479|gb|EEY43165.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae
RC27]
Length = 453
Score = 347 bits (891), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 191/468 (40%), Positives = 281/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT GRGGVGIIR+SG + + V +T L+PR+A Y F ++ +D+G+
Sbjct: 6 IVAQATALGRGGVGIIRVSGPLAAHVAQTVTGRT---LRPRYAEYLPFTDEDGQQLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F PHS+TGEDV+EL GHGGP+++ ML+ L+I G+R A PGEF++RAFLN+K
Sbjct: 63 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIK---GVRPARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FSK I+ L++ LI+LR +E + DFPEE
Sbjct: 120 MDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L+ + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LADGKVSADLQTIIDNLVAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + + VEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DAVEKIGIERAWEE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D + TD + P NI + + NK D +G I + N
Sbjct: 292 IRQADRVLFMVDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQP 351
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G++ LR L + + + E ++AR RH+ +L A +L+ I
Sbjct: 352 TLIRLSAKTGQGVDALRQHLKECMGFSGNQEGG-FMARRRHLDALERAAEHLA-----IG 405
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 406 QQQLEGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|92115430|ref|YP_575358.1| tRNA modification GTPase TrmE [Chromohalobacter salexigens DSM
3043]
gi|122419006|sp|Q1QS99.1|MNME_CHRSD RecName: Full=tRNA modification GTPase MnmE
gi|91798520|gb|ABE60659.1| tRNA modification GTPase trmE [Chromohalobacter salexigens DSM
3043]
Length = 458
Score = 347 bits (891), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 190/474 (40%), Positives = 272/474 (57%), Gaps = 24/474 (5%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
L + I IATPPGRGGVGIIRLSG + E + PR A Y F+ +
Sbjct: 6 LYRQDTIAAIATPPGRGGVGIIRLSGPASRDLAERILGHCPA---PRHAHYGPFYDADAQ 62
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F PHS+TGEDV+EL GHGGP+I+ +LL+ C+ ++G RLA PGEF++R
Sbjct: 63 VLDEGIALFFPGPHSFTGEDVLELQGHGGPVIMDLLLARCV----ALGARLARPGEFSER 118
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+ +AA++A+ SL G+FS ++ L+DKLI LR +E +
Sbjct: 119 AFLNDKLDLAQAEAIADLIDASSRAAAENALRSLQGEFSTRVSALVDKLIELRMFVEAAI 178
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFPEE + + + L ++ L ++ + AL+R G+NVV+ G+PN GKSSL
Sbjct: 179 DFPEEEIDFLADGK-VAAMLQGAQETLGEVRAAAGQGALMREGMNVVIAGRPNAGKSSLL 237
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L D AIVT I GTTRD + + I I+ + DTAG+ D I EKIG+
Sbjct: 238 NALTERDSAIVTDIEGTTRDVLREYIHIDGMPLHVIDTAGLRDTPDAI-------EKIGV 290
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
R W E++ +D ++ + DA TD + + P + V NKID SG +
Sbjct: 291 ARAWEEIEKADRVLLLVDATTTTQTDPMQLWPEFVARLPHPERLTLVRNKIDESGETEQS 350
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ + + LSA +G++ L+ L ++ T E + AR RH+ +L+ A L
Sbjct: 351 DLSTSPPIVRLSAKTGLGVDNLKEHLKAVMGFDATTEGR-FSARRRHLDALDRAGDALDN 409
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
I + EL+AEDLR + LS I G+ T +DLL IF FCIGK
Sbjct: 410 GIAQLRGHGAG-----ELLAEDLRDAQQALSEITGEFTADDLLGEIFGSFCIGK 458
>gi|336247905|ref|YP_004591615.1| tRNA modification GTPase TrmE [Enterobacter aerogenes KCTC 2190]
gi|334733961|gb|AEG96336.1| tRNA modification GTPase TrmE [Enterobacter aerogenes KCTC 2190]
Length = 454
Score = 347 bits (891), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 191/474 (40%), Positives = 280/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKARDVAQAVLGKLPK---PRYADYLPFKDADGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++R
Sbjct: 58 PLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIANPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D D + I+ P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTSAVDPAEIWPDFIERLPAKLPITVVRNKADVTGEALGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + I LSA G+ +LRN L + +E +LAR RH+ +L A +L
Sbjct: 347 SEVNGHSLIRLSARTGEGVEVLRNHLKQSMGFDTNMEGG-FLARRRHLQALETAADHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLSQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|410610862|ref|ZP_11321967.1| tRNA modification GTPase mnmE [Glaciecola psychrophila 170]
gi|410169573|dbj|GAC35856.1| tRNA modification GTPase mnmE [Glaciecola psychrophila 170]
Length = 460
Score = 347 bits (891), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 199/475 (41%), Positives = 286/475 (60%), Gaps = 27/475 (5%)
Query: 3 TKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNI 62
++ I+ AT PGRGGVGIIR+SG + + K + R A Y F +NN+
Sbjct: 8 SQQDTIVAQATAPGRGGVGIIRISGNLASTAARTILGKLPE---TRKAEYLPFSDTDNNL 64
Query: 63 IDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRA 122
ID+G+ I+FKAP+S+TGEDV+EL GHGG ++L MLL++ L+I K LR+A PGEF++RA
Sbjct: 65 IDQGIAIFFKAPNSFTGEDVLELQGHGGQVVLDMLLNAILKIPK---LRIARPGEFSERA 121
Query: 123 FLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFD 182
FLN+KLDL Q EAI DLI+AS+E AAK A+ SL G FS+ I+ L++++I+LR +E + D
Sbjct: 122 FLNDKLDLAQAEAIADLIDASSEQAAKGALRSLQGAFSQYIHTLVEQVIHLRMYVEAAID 181
Query: 183 FPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFN 242
FP+E + L+ +L I K + QQ K+ AL+R G+ VV+ G+PN GKSSL N
Sbjct: 182 FPDEEIDF-LSDGKIQKDLENIIKSFETLRQQTKQGALLREGMRVVIAGKPNAGKSSLLN 240
Query: 243 SLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302
+L G D AIVT +AGTTRD + + I ++ I DTAG+ D K VEKIGIE
Sbjct: 241 ALAGRDAAIVTDVAGTTRDVLKEHIHLDGMPLHIIDTAGLRDSPDK-------VEKIGIE 293
Query: 303 RTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNIN 359
R W E+K +D ++++ D+ T +K + + P NI + + NKID S +
Sbjct: 294 RAWQEIKQADRVLFMLDSTESTETHPEKIWPEFYQQLPKNIGLSVIRNKIDLSNETIGFD 353
Query: 360 YKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCA 419
+ I +SAS GI L L D + + E ++AR RH+ +++ A +L
Sbjct: 354 DSGDYPVISISASNEQGITFLTEHLKDCMGFNMSSEGQ-FIARRRHLDAIDRAAEHLYLG 412
Query: 420 IKIINQSEKNFEKNL--ELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ E+NL EL+AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 413 -------KYQLEENLAGELLAEELRLTQQHLNEITGEFSSDDLLAKIFSSFCIGK 460
>gi|127514790|ref|YP_001095987.1| tRNA modification GTPase TrmE [Shewanella loihica PV-4]
gi|166234821|sp|A3QJT0.1|MNME_SHELP RecName: Full=tRNA modification GTPase MnmE
gi|126640085|gb|ABO25728.1| tRNA modification GTPase trmE [Shewanella loihica PV-4]
Length = 453
Score = 347 bits (890), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 192/469 (40%), Positives = 276/469 (58%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG + V K R+A Y F + +ID+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGDKASDVAMAVLGHLPK---VRYADYCDFKAADGAVIDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK P+S+TGEDV+EL GHGG ++L ML+ +++ G+R+A PGEF+++AF+N+K
Sbjct: 63 ALYFKGPNSFTGEDVLELQGHGGQVVLDMLIKRVMDVD---GVRIAKPGEFSEQAFMNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AAKSA+ SL G+FS ++ L+D++ NLR +E + DFP+E
Sbjct: 120 LDLTQAEAIADLIDATSEQAAKSALNSLQGEFSTQVHELVDQVTNLRLYVEAAIDFPDEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ L KI KL + K+ A+IR G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 VDF-LSDGKIAASLGKIITKLDSVQSSAKQGAIIREGMKVVIAGRPNAGKSSLLNALAGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D + VE+IGIER W E
Sbjct: 239 ESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRD-------TTDTVEQIGIERAWAE 291
Query: 308 LKNSDIIIYVQDA----RYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNN 363
++ +D ++++ D D H D I P N+ V V NK D +G + +
Sbjct: 292 IETADQVLFMVDGTTTDAVDPH-DIWPDFIDRLPKNLGVTVVRNKADLTGESLDATDEQG 350
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
LSA G++ L+ L L+ +E +LAR RH+ +L A+ +L+ +
Sbjct: 351 HKVFRLSAKTGSGVDELKAHLKSLMGYQSNLEGG-FLARRRHLEALELASSHLA-----L 404
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + + EL+AE+LR C LS I GK T++DLL IFS FCIGK
Sbjct: 405 GQEQLEVYQAGELLAEELRMCQLALSEITGKFTSDDLLGKIFSSFCIGK 453
>gi|398944808|ref|ZP_10671477.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM41(2012)]
gi|398157791|gb|EJM46164.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM41(2012)]
Length = 456
Score = 347 bits (890), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 193/478 (40%), Positives = 284/478 (59%), Gaps = 28/478 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKK-TKKQLKPRFATYSSFFCKN 59
M I +AT GRGGVGI+R+SG + + K + ++LKPRFA Y F +N
Sbjct: 1 MSVPRETIAAVATAQGRGGVGIVRISGP----LASVAAKAFSGRELKPRFAHYGPFLSEN 56
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFT 119
+ ++D+G+ +YF P+S+TGEDV+EL GHGGP++L MLL CLE+G RLA PGEF+
Sbjct: 57 DEVLDQGIALYFPGPNSFTGEDVLELQGHGGPVVLDMLLKRCLELG----CRLARPGEFS 112
Query: 120 KRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEF 179
+RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G FS+ ++ L ++LI LR +E
Sbjct: 113 ERAFLNDKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSERVHNLTEQLIGLRIYVEA 172
Query: 180 SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
+ DFPEE + + + + + L K++ +L ++++ + AL+R+G+ VV+ G+PN GKSS
Sbjct: 173 AIDFPEEEIDFLADGH-VLSMLDKVRDELSTVLREAGQGALLRDGMTVVIAGRPNAGKSS 231
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + ++VEKI
Sbjct: 232 LLNALAGREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTD-------DQVEKI 284
Query: 300 GIERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356
G+ER + +D ++ V DA + D + ++ P V + NK D +G
Sbjct: 285 GVERALKAIGEADRVLLVVDATAPEALDPFALWPEFLEIRPDPAKVTLIRNKADLTGEAI 344
Query: 357 NINY-KNNIANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ ++ I LSA S G+ LLR+ L + QT ESS + AR RH+ +L A+
Sbjct: 345 ALEVSEDGHVTISLSAKSAGEGLELLRDHLKACMGYEQTSESS-FSARRRHLEALRHASA 403
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L +++ EL+AEDLR L I G +++DLL IFS FCIGK
Sbjct: 404 SLEH-----GRAQLTLAGAGELLAEDLRQAQHALGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|444353989|ref|YP_007390133.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Enterobacter
aerogenes EA1509E]
gi|443904819|emb|CCG32593.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Enterobacter
aerogenes EA1509E]
Length = 467
Score = 347 bits (890), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 191/475 (40%), Positives = 281/475 (59%), Gaps = 23/475 (4%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
+++ N I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F +
Sbjct: 13 IMSHNDTIVAQATPPGRGGVGILRISGLKARDVAQAVLGKLPK---PRYADYLPFKDADG 69
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++
Sbjct: 70 TPLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIANPGEFSE 126
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 127 RAFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAA 186
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 187 IDFPDEEIDF-LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSL 245
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IG
Sbjct: 246 LNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIG 298
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
IER W E++ +D ++++ D D + I+ P +P+ V NK D +G
Sbjct: 299 IERAWQEIEQADRVLFMVDGTTTSAVDPAEIWPDFIERLPAKLPITVVRNKADVTGEALG 358
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
++ N + I LSA G+ +LRN L + +E +LAR RH+ +L A +L
Sbjct: 359 LSEVNGHSLIRLSARTGEGVEVLRNHLKQSMGFDTNMEGG-FLARRRHLQALETAADHLQ 417
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 418 QGKAQLLGAWAG-----ELLAEELRLSQQALSEITGEFTSDDLLGRIFSSFCIGK 467
>gi|317050193|ref|YP_004117841.1| tRNA modification GTPase TrmE [Pantoea sp. At-9b]
gi|316951810|gb|ADU71285.1| tRNA modification GTPase TrmE [Pantoea sp. At-9b]
Length = 454
Score = 347 bits (890), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 192/478 (40%), Positives = 281/478 (58%), Gaps = 31/478 (6%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ + I+ ATPPGRGGVGI+R+SG I V K K PR+A Y F + +
Sbjct: 1 MSHSDTIVAQATPPGRGGVGILRISGAKAADIARAVLGKLPK---PRYADYLPFADSDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL + + G+R+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIVAL---PGVRIAQPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS IN L++ L LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSVRINALVEALTYLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNAVIGDLNAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D N +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAN-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHT-------DFDKKIIKNFPMNIPVIYVWNKIDYSGH 354
ER W E++ +D ++++ D T DF + P +P+ V NK D +G
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDATEAAAIWPDF----VSRLPAELPITVVRNKADMTGE 342
Query: 355 QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
++ N + I LSA G++ LR+ L + + +E +LAR RH+ +L A
Sbjct: 343 SLGLSEVNGHSLIRLSARTGAGVDTLRDHLKQTMGFSGNMEGG-FLARRRHLQALELAAT 401
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L + + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 402 HLQQGKDQLLGAWAG-----ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|90194136|gb|ABD92629.1| ThdF [Pasteurella multocida subsp. gallicida]
Length = 436
Score = 347 bits (890), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 192/462 (41%), Positives = 275/462 (59%), Gaps = 35/462 (7%)
Query: 13 TPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFK 72
T PGRGG+GI+R+SG + V K K PR A Y F + N++D+G+ +YFK
Sbjct: 1 TAPGRGGIGILRVSGPKAVEVAHAVLGKCPK---PRMADYLPFKDSDGNVLDQGIALYFK 57
Query: 73 APHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQ 132
APHS+TGEDV+EL GHGG ++L +LL L++ GLRLA PGEF+++AFLN+KLDL Q
Sbjct: 58 APHSFTGEDVLELQGHGGQVVLDLLLKRILQLE---GLRLARPGEFSEQAFLNDKLDLAQ 114
Query: 133 VEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELIL 192
EAI DLI+AS+E AA+SA+ SL G+FS +N L+D +I LRT +E + DFP+E + +
Sbjct: 115 AEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEEIDFLA 174
Query: 193 NK------NDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVG 246
+ ND +L ++ + K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 175 DGKIEAHLNDIITQLDHVRS-------EAKQGSILREGMKVVIAGRPNAGKSSLLNALAG 227
Query: 247 SDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWV 306
+ AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI R W
Sbjct: 228 REAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREATDEVERIGIVRAWS 280
Query: 307 ELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNN 363
E++ +D I+ + D+ + D +K + + P NIPV V NK D SG + I +N
Sbjct: 281 EIEQADRILLMLDSTEADNQDLEKVRSEFLTKLPSNIPVTVVRNKADLSGENEGIVEQNG 340
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA + G+ LLR L + +E +LAR RH+ +L +A +L +
Sbjct: 341 YTVITLSAKTQQGVALLREHLKQSMGYQTNMEGG-FLARRRHLEALEQAATHLQQGHVQL 399
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
Q EL+AE+LR LS I G+ T++DLL NIF
Sbjct: 400 TQFYAG-----ELLAEELRRVQNHLSEITGQFTSDDLLGNIF 436
>gi|354599881|ref|ZP_09017898.1| tRNA modification GTPase mnmE [Brenneria sp. EniD312]
gi|353677816|gb|EHD23849.1| tRNA modification GTPase mnmE [Brenneria sp. EniD312]
Length = 454
Score = 347 bits (890), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 190/474 (40%), Positives = 280/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ I+ ATPPGRGGVGI+R+SG+ ++ + V K + PR A Y F +
Sbjct: 1 MSNTDTIVAQATPPGRGGVGILRVSGRAASAVAQAVLGKLPR---PRRADYLPFRDSDGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + + +R+A PGEF++R
Sbjct: 58 PLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLQRILALPE---VRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS IN L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSSRINHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + + +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIERQLDNVMADLDAVRAEAHQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D N +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAN-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D + + + I P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTQAVEPAAIWPEFIARLPKTLPITVVRNKADITGEPLGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
++ + I LSA GI LR L + T + E +LAR RH+ +L +A +L
Sbjct: 347 ENVSDYSLIRLSARTGEGIETLREHLKQSMGFTSSTEGG-FLARRRHLQALEQAAQHL-- 403
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
I + + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 404 ---IQGKEQLVSAYAGELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|261823804|ref|YP_003261910.1| tRNA modification GTPase TrmE [Pectobacterium wasabiae WPP163]
gi|261607817|gb|ACX90303.1| tRNA modification GTPase TrmE [Pectobacterium wasabiae WPP163]
Length = 454
Score = 347 bits (890), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 190/474 (40%), Positives = 280/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ I+ ATPPGRGGVGI+R+SG+ + + K K PR A Y F N
Sbjct: 1 MSNTDTIVAQATPPGRGGVGILRVSGRAAAEVAHAILGKLPK---PRHADYLPFRDTNGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + +R+A PGEF++R
Sbjct: 58 TLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLQRILTLPN---VRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS IN L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGVFSTRINQLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + + +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNGVMADLDAVRAEAHQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT+IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTAIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D + T+ ++ + + P +P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTQATEPEQIWPEFMARLPKTLPITVVRNKADVTGETLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N + I LSA G++ LR+ L + T E +LAR RH+ +L A +L
Sbjct: 347 EDVNTHSLIRLSARTGEGVDTLRDHLKQSMGFTSNTEGG-FLARRRHLQALELAAQHLVQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKEQLVSAYAG-----ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|238783044|ref|ZP_04627071.1| tRNA modification GTPase mnmE [Yersinia bercovieri ATCC 43970]
gi|238716045|gb|EEQ08030.1| tRNA modification GTPase mnmE [Yersinia bercovieri ATCC 43970]
Length = 482
Score = 347 bits (890), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 192/474 (40%), Positives = 285/474 (60%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ I+ ATPPGRGGVGI+R+SG+ ++ + V K K PR+A Y F + +
Sbjct: 29 MSATDTIVAQATPPGRGGVGILRVSGRAAAAVAQAVLGKLPK---PRYADYLPFKDVDGS 85
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ +YF P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++R
Sbjct: 86 TLDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILAL---PGLRIARPGEFSER 142
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS I+ L++ L +LR +E +
Sbjct: 143 AFLNDKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSVRIHQLVEALTHLRIYVEAAI 202
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + +L ++ + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 203 DFPDEEIDF-LSDGKIEGQLNGVMAELEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLL 261
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 262 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 314
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D T+ + + P +P+ V NK D +G +
Sbjct: 315 ERAWNEIEQADRVLFMVDGTTTDATEPAAIWPEFMARLPSTLPITVVRNKADITGETLGL 374
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N + I LSA GI+LLRN L + T E +LAR RH+ +L A +L
Sbjct: 375 TEVNGHSLIRLSARTGEGIDLLRNHLKQSMGFTSNTEGG-FLARRRHLQALETAAQHLVQ 433
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + + EL+AE+LR + LS I G+ +++DLL IFS FCIGK
Sbjct: 434 GHEQLVSAYAG-----ELLAEELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 482
>gi|393763506|ref|ZP_10352126.1| tRNA modification GTPase TrmE [Alishewanella agri BL06]
gi|392605574|gb|EIW88465.1| tRNA modification GTPase TrmE [Alishewanella agri BL06]
Length = 453
Score = 347 bits (890), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 189/468 (40%), Positives = 283/468 (60%), Gaps = 24/468 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I +AT PGR GVGIIR+SG + ++ + K+ K PR+A Y FF + ++D+G+
Sbjct: 7 IAAVATAPGRAGVGIIRISGPDCKTVAAAILKRLPK---PRYAEYLPFFA-TDQVLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P+S+TGEDV+EL GHGGP++L MLL L+ + +R+A PGEF++RAFLN+K
Sbjct: 63 ALYFPGPNSFTGEDVLELQGHGGPVLLDMLLRQVLQ---TPNVRIARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AA+SAM SL G+FSK I+ L++K+I+LR +E + DFP+E
Sbjct: 120 LDLAQAEAIADLIDASSEQAARSAMQSLQGEFSKRIHQLVEKVIHLRMYVEAAIDFPDEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L +I L ++ +Q + +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LSDGKVAADLAEIIDDLAQVRKQATQGSILREGMKVVIAGRPNAGKSSLLNALAGR 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D ++VE+IGI R W E
Sbjct: 239 EAAIVTEIAGTTRDVLREHIHIDGMPLHIIDTAGLRDTE-------DQVEQIGIARAWQE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
+ +D ++++ D+ TD + I P + + + NK D +G + +
Sbjct: 292 IAKADRVLFMVDSTTTADTDPHAIWPEFIDRLPPGLGITVIRNKADLTGESLQPDELAAV 351
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
LSA GI+ LR L I + E S +LAR RH+ +L+ A +L+ I
Sbjct: 352 PVYPLSAKTGAGIDALREHLKRCIGFDASTEGS-FLARRRHLDALDRAAEHLA-----IG 405
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 406 QEQLHSFIAGEILAEELRLSQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|121730054|ref|ZP_01682463.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae V52]
gi|147673066|ref|YP_001218408.1| tRNA modification GTPase TrmE [Vibrio cholerae O395]
gi|227116544|ref|YP_002818440.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae O395]
gi|254291135|ref|ZP_04961932.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae
AM-19226]
gi|121628203|gb|EAX60726.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae V52]
gi|146314949|gb|ABQ19488.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae O395]
gi|150422980|gb|EDN14930.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae
AM-19226]
gi|227011994|gb|ACP08204.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae O395]
Length = 464
Score = 347 bits (890), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 191/468 (40%), Positives = 280/468 (59%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT GRGGVGIIR+SG + + V +T L+PR+A Y F ++ +D+G+
Sbjct: 17 IVAQATALGRGGVGIIRVSGPLAAHVAQTVTGRT---LRPRYAEYLPFTDEDGQQLDQGI 73
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F PHS+TGEDV+EL GHGGP+++ ML+ L+I G+R A PGEF++RAFLN+K
Sbjct: 74 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIK---GVRPARPGEFSERAFLNDK 130
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FSK I+ L++ LI+LR +E + DFPEE
Sbjct: 131 MDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE 190
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 191 IDF-LADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 249
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + + VEKIGIER W E
Sbjct: 250 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DAVEKIGIERAWEE 302
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D + TD + P NI + + NK D +G I + N
Sbjct: 303 IRQADRVLFMVDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQP 362
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G++ LR L + + + E ++AR RH+ +L A +L+ I
Sbjct: 363 TLIRLSAKTGQGVDALRQHLKECMGFSGNQEGG-FMARRRHLDALERAAEHLA-----IG 416
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 417 QQQLEGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 464
>gi|388256234|ref|ZP_10133415.1| tRNA modification GTPase [Cellvibrio sp. BR]
gi|387939934|gb|EIK46484.1| tRNA modification GTPase [Cellvibrio sp. BR]
Length = 453
Score = 347 bits (890), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 192/468 (41%), Positives = 284/468 (60%), Gaps = 24/468 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT GRGGVGI+R+SG + E + + L+PR A Y F ++D+G+
Sbjct: 7 IAAIATATGRGGVGIVRVSGPKAKQVAEQLLTVS---LQPRHAHYCDFTSHQGEVLDQGI 63
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F P+S+TGEDV+EL GHGGP+IL +LL ++G +RLA PGEF++RAFLN+K
Sbjct: 64 ALFFPGPNSFTGEDVLELQGHGGPVILDLLLREITQLG----IRLARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A+TE AA++A+ SL G FSK IN L++ LI+LR +E S DFPEE
Sbjct: 120 LDLAQAEAIADLIDATTEQAARNALHSLQGAFSKRINELVEALIHLRIYVEASIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L I KL + ++ K+ AL+R+G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LSDGKVARDLEGIIGKLASVFKEAKQGALVRDGMRVVIAGRPNAGKSSLLNALSGR 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVTSI GTTRD + + I I+ I DTAG ++++ +EVE+IGI+R W E
Sbjct: 239 ESAIVTSIEGTTRDVLREHIHIDGMPLHIIDTAG-------LRESPDEVEQIGIQRAWQE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++ + D+R T+ + + + P + V NKID SG + +
Sbjct: 292 IQQADRVLLLIDSRETTLTNPHQIWPEFVDQLPDPSKITLVRNKIDLSGEAAGLFETDAA 351
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
A I +SA+ G++ L++ L +++ + + ES + AR RH+ +L A +L+
Sbjct: 352 AYIGISAATGAGVDSLKHHLKNIMGFSDSGESG-FTARRRHLDALARAENFLAS-----G 405
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ EL+AEDLR L I G+ T +DLL IFS FCIGK
Sbjct: 406 KAQLQGYAAGELLAEDLRQAQNALGEITGEFTPDDLLGRIFSSFCIGK 453
>gi|416036079|ref|ZP_11573613.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|347996838|gb|EGY37887.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
Length = 451
Score = 347 bits (890), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 194/468 (41%), Positives = 278/468 (59%), Gaps = 24/468 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PG GG+GI+R+SG + + V K K PR A Y F + ++D+G+
Sbjct: 5 IVAQATAPGCGGIGILRVSGPKAIEVAQAVLGKCPK---PRMADYLPFKEADGTVLDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK P+S+TGEDV+EL GHGG ++L +LL L I G+RLA PGEF+++AFLN+K
Sbjct: 62 ALYFKGPNSFTGEDVLELQGHGGQVVLDLLLKRILRIE---GIRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AA+SA+ SL G+FS +N L+D +I LRT +E + DFP+E
Sbjct: 119 LDLAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEE 178
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L L I +L K+ + K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 179 IDF-LADGKIEGHLNDIIAQLDKVRAEAKQGSILREGMKVVIAGRPNAGKSSLLNTLAGR 237
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D +EVE+IGI R W E
Sbjct: 238 EAAIVTDIAGTTRDVLREHIHLDGMPLHIIDTAGLRDAT-------DEVERIGISRAWHE 290
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D I+ + D+ D D K + + NIP+ + NK D SG + + ++
Sbjct: 291 IEQADRILLMLDS-SDTEQDLTKVRSEFLAKLSNNIPLTIIRNKADLSGEAERLYEEDGY 349
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
+ LSA + G++LLR+ L + QT +LAR RH+ +L A +L +
Sbjct: 350 TVVNLSAKTQQGVDLLRDHLKQAM-GYQTGMEGGFLARRRHLEALELAARHLQMGHVQLT 408
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 409 QFHAG-----ELLAEELRMVQSALSEITGQFTSDDLLTNIFSSFCIGK 451
>gi|385874321|gb|AFI92841.1| tRNA modification GTPase mnmE [Pectobacterium sp. SCC3193]
Length = 454
Score = 347 bits (889), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 189/474 (39%), Positives = 280/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ I+ ATPPGRGGVGI+R+SG+ + + K K PR A Y F N
Sbjct: 1 MSNTDTIVAQATPPGRGGVGILRVSGRAAAEVAHAILGKLPK---PRHADYLPFRDTNGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + +R+A PGEF++R
Sbjct: 58 TLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLQRILTLPN---VRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS IN L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGVFSTRINQLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + + +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNGVMADLDAVRAEAHQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT+IAGTTRD + + I I+ + DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTAIAGTTRDVLREHIHIDGMPLHVIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D + T+ ++ + + P +P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTQATEPEQIWPEFMARLPKTLPITVVRNKADVTGETLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N + I LSA G++ LR+ L + T E +LAR RH+ +L A +L
Sbjct: 347 EDVNTHSLIRLSARTGEGVDTLRDHLKQSMGFTSNTEGG-FLARRRHLQALELAAQHLVQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKEQLVSAYAG-----ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|429885487|ref|ZP_19367073.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae
PS15]
gi|205829218|sp|A5F485.2|MNME_VIBC3 RecName: Full=tRNA modification GTPase MnmE
gi|429227709|gb|EKY33697.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae
PS15]
Length = 453
Score = 347 bits (889), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 191/468 (40%), Positives = 280/468 (59%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT GRGGVGIIR+SG + + V +T L+PR+A Y F ++ +D+G+
Sbjct: 6 IVAQATALGRGGVGIIRVSGPLAAHVAQTVTGRT---LRPRYAEYLPFTDEDGQQLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F PHS+TGEDV+EL GHGGP+++ ML+ L+I G+R A PGEF++RAFLN+K
Sbjct: 63 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIK---GVRPARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FSK I+ L++ LI+LR +E + DFPEE
Sbjct: 120 MDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + + VEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DAVEKIGIERAWEE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D + TD + P NI + + NK D +G I + N
Sbjct: 292 IRQADRVLFMVDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQP 351
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G++ LR L + + + E ++AR RH+ +L A +L+ I
Sbjct: 352 TLIRLSAKTGQGVDALRQHLKECMGFSGNQEGG-FMARRRHLDALERAAEHLA-----IG 405
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 406 QQQLEGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|50123364|ref|YP_052531.1| tRNA modification GTPase TrmE [Pectobacterium atrosepticum
SCRI1043]
gi|81643492|sp|Q6CYQ9.1|MNME_ERWCT RecName: Full=tRNA modification GTPase MnmE
gi|49613890|emb|CAG77342.1| probable tRNA modification GTPase [Pectobacterium atrosepticum
SCRI1043]
Length = 454
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 192/474 (40%), Positives = 280/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ I+ ATPPGRGGVGI+R+SG+ + V K K PR A Y F N
Sbjct: 1 MSNTDTIVAQATPPGRGGVGILRVSGQAAAEVAHAVLGKLPK---PRHADYLPFRDTNGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + +R+A PGEF++R
Sbjct: 58 TLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLQRILTLPN---VRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS IN L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGVFSTRINQLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + + +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNGVMADLDAVRTEAHQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT+IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTAIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D + T+ ++ + + P +P+ V NK D +G I
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTQATEPEQIWPEFMARLPKTLPITVVRNKADVTGETLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N + I LSA G++ LR+ L + T E +LAR RH+ +L A +L
Sbjct: 347 ADVNTHSLIRLSARTGEGVDTLRDHLKQSMGFTSNTEGG-FLARRRHLQALELAAQHL-- 403
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
I + + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 404 ---IQGKEQLVSAYAGELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|90194066|gb|ABD92594.1| ThdF [Pasteurella multocida]
Length = 436
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 192/462 (41%), Positives = 275/462 (59%), Gaps = 35/462 (7%)
Query: 13 TPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFK 72
T PGRGG+GI+R+SG + V K K PR A Y F + N++D+G+ +YFK
Sbjct: 1 TAPGRGGIGILRVSGPKAVEVAHAVLGKCPK---PRMADYLPFKDSDGNVLDQGIALYFK 57
Query: 73 APHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQ 132
APHS+TGEDV+EL GHGG ++L +LL L++ GLRLA PGEF+++AFLN+KLDL Q
Sbjct: 58 APHSFTGEDVLELQGHGGQVVLDLLLKRILQLE---GLRLARPGEFSEQAFLNDKLDLAQ 114
Query: 133 VEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELIL 192
EAI DLI+AS+E AA+SA+ SL G+FS +N L+D +I LRT +E + DFP+E + +
Sbjct: 115 AEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEEIDFLA 174
Query: 193 NK------NDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVG 246
+ ND +L ++ + K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 175 DGKIEAHLNDIITQLDHVRS-------EAKQGSILREGMKVVIAGRPNAGKSSLLNALAG 227
Query: 247 SDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWV 306
+ AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI R W
Sbjct: 228 REAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREATDEVERIGIVRAWS 280
Query: 307 ELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNN 363
E++ +D I+ + D+ + D +K + + P NIPV V NK D SG + I +N
Sbjct: 281 EIEQADRILLMLDSTEADNQDLEKVRSEFLTKLPSNIPVTIVRNKADLSGENEGIVEQNG 340
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA + G+ LLR L + +E +LAR RH+ +L +A +L +
Sbjct: 341 YTVITLSAKTQQGVALLREHLKQSMGYQTNMEGG-FLARRRHLEALEQAATHLQQGHVQL 399
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
Q EL+AE+LR LS I G+ T++DLL NIF
Sbjct: 400 TQFYAG-----ELLAEELRRVQNHLSEITGQFTSDDLLGNIF 436
>gi|392540093|ref|ZP_10287230.1| tRNA modification GTPase TrmE [Pseudoalteromonas marina mano4]
Length = 454
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 197/464 (42%), Positives = 277/464 (59%), Gaps = 23/464 (4%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
AT PGRGGVGIIR+SG S+ E V K K R+A Y F N + +D+G+ IYF
Sbjct: 11 ATAPGRGGVGIIRVSGSLAKSVAEKVIGKIPK---VRYADYVPFKNLNGDQLDQGIAIYF 67
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP++L MLL EI K G+RLA PGEF++RAF+N+KLDL
Sbjct: 68 AGPNSFTGEDVLELQGHGGPVVLDMLLK---EISKIEGVRLAKPGEFSERAFMNDKLDLT 124
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLINA++E AAKSA+ SL G+FSK I L++K+I+LR +E + DFP+E +
Sbjct: 125 QAEAISDLINATSEQAAKSALQSLQGEFSKHIETLVEKVIHLRMYVEAAIDFPDEEIDF- 183
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L I +L + Q K+ +++R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 184 LSDGKVSGDLNAIINQLNTVTDQAKQGSIMREGMRVVIAGRPNAGKSSLLNALAGREAAI 243
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG ++++ + VE+IGIER W E+ +
Sbjct: 244 VTEIAGTTRDVLREHIHIDGMPLHIIDTAG-------LRESPDRVEQIGIERAWDEINQA 296
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D TD K + + P + V + NK D SG ++ I
Sbjct: 297 DRVLFMLDGTDTVDTDPHKIWPEFMAKLPKGMGVTVIRNKADLSGDVVGLDENQQYPVIS 356
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA GI L+R L I E ++AR RH+ +L A Y+L +++
Sbjct: 357 LSAKNAEGIELVREHLKACIGFDGATEGG-FMARRRHLDALESAAYHLDTG-----KTQL 410
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
E++AE+LR + L+ I G+ T++DLL IFS FCIGK
Sbjct: 411 EMHVAGEILAEELRLTQQFLNEITGEFTSDDLLGKIFSSFCIGK 454
>gi|359446391|ref|ZP_09236068.1| tRNA modification GTPase MnmE [Pseudoalteromonas sp. BSi20439]
gi|358039730|dbj|GAA72317.1| tRNA modification GTPase MnmE [Pseudoalteromonas sp. BSi20439]
Length = 454
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 193/464 (41%), Positives = 276/464 (59%), Gaps = 23/464 (4%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
AT PGRGGVGIIR+SG + E + K K R+A Y F +D+G+ IYF
Sbjct: 11 ATAPGRGGVGIIRVSGTLAKQVAEKIIGKVPK---VRYADYVPFNTLAGQQLDQGIAIYF 67
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP++L MLL EI K G+RLA PGEF++RAF+N+KLDL
Sbjct: 68 AGPNSFTGEDVLELQGHGGPVVLDMLLK---EISKIDGVRLAKPGEFSERAFMNDKLDLT 124
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLINA++E AAKSA+ SL G+FSK I L++K+I+LR +E + DFP+E +
Sbjct: 125 QAEAIADLINATSEQAAKSALQSLQGQFSKHIETLVEKVIHLRMYVEAAIDFPDEEIDF- 183
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L I ++L + Q K+ +++R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 184 LSDGKVGGDLNAIIEQLNAVTNQAKQGSIMREGMRVVIAGRPNAGKSSLLNALAGREAAI 243
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG ++++ ++VE+IGIER W E+ +
Sbjct: 244 VTEIAGTTRDVLREHIHIDGMPLHIIDTAG-------LRESPDKVEQIGIERAWDEINQA 296
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D TD + + P + V + NK D SG ++ + I
Sbjct: 297 DRVLFMLDGTDTADTDPHAIWPEFMAKLPQGMGVTVIRNKADLSGDTVGMDQEQQYPVIS 356
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA GI L+R L I E ++AR RH+ +L A Y+L +++
Sbjct: 357 LSAKNADGIELVREHLKACIGFDGATEGG-FMARRRHLDALEHAAYHLDT-----GKTQL 410
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
E++AE+LR + L+ I G+ T++DLL IFS FCIGK
Sbjct: 411 EMHVAGEILAEELRLTQQYLNEITGEFTSDDLLGKIFSSFCIGK 454
>gi|229515956|ref|ZP_04405413.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae TMA
21]
gi|229347056|gb|EEO12018.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae TMA
21]
Length = 453
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 191/468 (40%), Positives = 280/468 (59%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT GRGGVGIIR+SG + + V +T L+PR+A Y F ++ +D+G+
Sbjct: 6 IVAQATALGRGGVGIIRVSGPLAAHVAQTVTGRT---LRPRYAEYLPFTDEDGQQLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F PHS+TGEDV+EL GHGGP+++ ML+ L+I G+R A PGEF++RAFLN+K
Sbjct: 63 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIK---GVRPARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FSK I+ L++ LI+LR +E + DFPEE
Sbjct: 120 MDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + + VEKIGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DAVEKIGIERAWEE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D + TD + P NI + + NK D +G I + N
Sbjct: 292 IRQADRVLFMVDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLEICHVNQP 351
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G++ LR L + + + E ++AR RH+ +L A +L+ I
Sbjct: 352 TLIRLSAKTGQGVDALRQHLKECMGFSGNQEGG-FMARRRHLDALERAAEHLA-----IG 405
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 406 QQQLEGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
>gi|443474058|ref|ZP_21064079.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pseudomonas
pseudoalcaligenes KF707]
gi|442904993|gb|ELS29908.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pseudomonas
pseudoalcaligenes KF707]
Length = 455
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 189/470 (40%), Positives = 274/470 (58%), Gaps = 27/470 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I +AT GRGGVGI+R+SG I + +C +T PRFA Y F +D+G+
Sbjct: 8 IAAVATAQGRGGVGIVRVSGPLAARIADAICGRTPN---PRFAHYGPFLDATGQTLDEGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P+S+TGEDV EL GHGGP++L +LL C+E+G R A PGEF++RAFLN+K
Sbjct: 65 ALYFPGPNSFTGEDVFELQGHGGPVVLDILLRRCMELGA----RQARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+E AA++A+ SL G FS+ ++ L ++LI LR +E + DFPEE
Sbjct: 121 LDLAQAEAIADLIEASSEQAARNALRSLQGAFSRRVHSLTEQLIELRIYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + + L ++ L +I++ + AL+R+G+NVV+ G+PN GKSSL N+L G
Sbjct: 181 IDFLADGH-VLRLLDGVRDNLSTVIREAGQGALLRDGMNVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ + DTAG+ D + + VEKIG+ER
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTD-------DHVEKIGVERALKA 292
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
+ +D ++ + DA + TD + + P V + NK D SG ++ +
Sbjct: 293 ITEADRVLLMVDATAPEATDPFALWPEFLDQRPDPAKVTLIRNKADLSGEPVRLDISED- 351
Query: 365 ANIYLSASKRI--GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKI 422
++ LS S R G+ LLR L + QT ES+ + AR RH+ +L +A +L
Sbjct: 352 GHVTLSLSARTGDGLELLREHLKSCMGYQQTFEST-FSARRRHLEALRQAGDFLEH---- 406
Query: 423 INQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ EL+AEDLR L I G +++DLL IFS FCIGK
Sbjct: 407 -GRNQLTLAGAGELLAEDLRQAQHALGEITGAFSSDDLLGRIFSSFCIGK 455
>gi|330812748|ref|YP_004357210.1| tRNA modification GTPase, TrmE [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|423700218|ref|ZP_17674708.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens Q8r1-96]
gi|327380856|gb|AEA72206.1| putative tRNA modification GTPase, TrmE [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|388004367|gb|EIK65680.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens Q8r1-96]
Length = 456
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 192/479 (40%), Positives = 281/479 (58%), Gaps = 30/479 (6%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKK-TKKQLKPRFATYSSFFCKN 59
M I +AT GRGGVGI+R+SG + + K + ++LKPRFA Y FF +
Sbjct: 1 MSAPRETIAAVATAQGRGGVGIVRISGP----LASVAAKAISGRELKPRFAHYGPFFSDD 56
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFT 119
++D+GL +YF P+S+TGEDV+EL GHGGP++L MLL CLE+G RLA PGEF+
Sbjct: 57 QQVLDEGLALYFPGPNSFTGEDVLELQGHGGPVVLDMLLKRCLELG----CRLARPGEFS 112
Query: 120 KRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEF 179
+RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G FS ++ L ++LI LR +E
Sbjct: 113 ERAFLNDKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSLRVHNLTEQLIGLRIYVEA 172
Query: 180 SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
+ DFPEE + + + + + L K++ +L ++++ + AL+R+G+ VV+ G+PN GKSS
Sbjct: 173 AIDFPEEEIDFLADGH-VLSMLDKVRDELSTVLREAGQGALLRDGMTVVIAGRPNAGKSS 231
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D ++VEKI
Sbjct: 232 LLNALAGREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTE-------DQVEKI 284
Query: 300 GIERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356
G+ER + +D ++ V DA + D + ++ P V + NK D +G
Sbjct: 285 GVERALKAIGEADRVLLVVDATAPEADDPFALWPEFLEVRPDPAKVTLIRNKADLTGEAI 344
Query: 357 NINYKNNIANIYLSASKRI---GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEAN 413
+ N+ ++ +S S + G+ LLR L + QT ESS + AR RH+ +L A+
Sbjct: 345 VLEVSND-GHVTISLSAKAAGEGLELLREHLKACMGYEQTSESS-FSARRRHLEALRHAS 402
Query: 414 YYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L +++ EL+AEDLR L I G +++DLL IFS FCIGK
Sbjct: 403 AALEH-----GRAQLTLAGAGELLAEDLRQAQHSLGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|421083330|ref|ZP_15544206.1| TRNA modification GTPase MnmE [Pectobacterium wasabiae CFBP 3304]
gi|401701894|gb|EJS92141.1| TRNA modification GTPase MnmE [Pectobacterium wasabiae CFBP 3304]
Length = 454
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 192/468 (41%), Positives = 278/468 (59%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ ATPPGRGGVGI+R+SG+ + V K K PR A Y F N +D+G+
Sbjct: 7 IVAQATPPGRGGVGILRVSGQAAAEVAHAVLGKLPK---PRHADYLPFRDSNGTTLDQGI 63
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F P+S+TGEDV+EL GHGGP+IL +LL L + +R+A PGEF++RAFLN+K
Sbjct: 64 ALWFPGPNSFTGEDVLELQGHGGPVILDLLLQRILTLPN---VRIARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AA+SA+ SL G FS IN L++ L +LR +E + DFP+E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSALNSLQGVFSTRINQLVEALTHLRIYVEAAIDFPDEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L + L + + + +L+R G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDF-LSDGKIEVQLNGVMADLGAVRAEAHQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGIER W E
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGIERAWQE 292
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D + T+ ++ + + P +P+ V NK D +G I N
Sbjct: 293 IEQADRVLFMVDGTTTQATEPEQIWPEFMARLPKTLPITVVRNKADVTGETLGIKDVNTH 352
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
+ I LSA G++ LR+ L + T + E +LAR RH+ +L A +L I
Sbjct: 353 SLIRLSARTGEGVDTLRDHLKQSMGFTSSTEGG-FLARRRHLQALELAAQHL-----IQG 406
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 407 KEQLVSAYAGELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|153212987|ref|ZP_01948581.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae 1587]
gi|124116213|gb|EAY35033.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae 1587]
Length = 464
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 194/473 (41%), Positives = 282/473 (59%), Gaps = 33/473 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT GRGGVGIIR+SG + + V +T L+PR+A Y F ++ +D+G+
Sbjct: 17 IVAQATALGRGGVGIIRVSGPLAAHVAQTVTGRT---LRPRYAEYLPFTDEDGQQLDQGI 73
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F PHS+TGEDV+EL GHGGP+++ ML+ L+I G+R A PGEF++RAFLN+K
Sbjct: 74 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIK---GVRPARPGEFSERAFLNDK 130
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FSK I+ L++ LI+LR +E + DFPEE
Sbjct: 131 MDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE 190
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 191 IDF-LADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 249
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + + VEKIGIER W E
Sbjct: 250 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DAVEKIGIERAWEE 302
Query: 308 LKNSDIIIYVQDARYDKHTD--------FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNIN 359
++ +D ++++ D + TD FDK P NI + + NK D +G I
Sbjct: 303 IRQADRVLFMVDGTTTEATDPQDIWPDFFDK-----LPENIGITVIRNKADQTGEPLGIC 357
Query: 360 YKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCA 419
+ N I LSA G++ LR L + + + E ++AR RH+ +L A +L+
Sbjct: 358 HVNQPTLIRLSAKTGQGVDALRQHLKECMGFSGNQEGG-FMARRRHLDALERAAEHLA-- 414
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
I Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 415 ---IGQQQLEGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 464
>gi|383192306|ref|YP_005202434.1| tRNA modification GTPase TrmE [Rahnella aquatilis CIP 78.65 = ATCC
33071]
gi|371590564|gb|AEX54294.1| tRNA modification GTPase TrmE [Rahnella aquatilis CIP 78.65 = ATCC
33071]
Length = 454
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 188/474 (39%), Positives = 287/474 (60%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ + II ATPPGRGGVGI+R+SG+ + + V K K PR+A Y F + +
Sbjct: 1 MSTSDTIIAQATPPGRGGVGILRISGRAARDVAQAVLGKLPK---PRYADYLPFQDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL + + +R+A PGEF++R
Sbjct: 58 TLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIIALEN---VRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS I+ L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSNRIHHLVEALTHLRIFVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAKLNTVMGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I ++ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHLDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHT---DFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D+++++ D T D + + P +P++ V NK D +G
Sbjct: 287 ERAWNEIELADLVLFMVDGTTTAATEPADIWPEFMARLPATLPIVVVRNKADITGEALGQ 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N + I LSA G++LLR+ L ++ +E +LAR RH+ +L +A +L
Sbjct: 347 TEVNGHSLIRLSARTGDGVDLLRDHLKQVMGFNHNMEGG-FLARRRHLQALEQAAQHL-- 403
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ +Q + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 404 -VQGKDQLLGAWAG--ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|77361917|ref|YP_341492.1| tRNA modification GTPase TrmE [Pseudoalteromonas haloplanktis
TAC125]
gi|123589159|sp|Q3IK56.1|MNME_PSEHT RecName: Full=tRNA modification GTPase MnmE
gi|76876828|emb|CAI88050.1| enzyme adding cmnm(5) to tRNA-s(2)U34, forming (with subsequent
MnmG action) cmnm(5)s(2)U34-tRNA, an intermediate in
mnm(5)s(2)U34-tRNA synthesis [Pseudoalteromonas
haloplanktis TAC125]
Length = 454
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 196/464 (42%), Positives = 276/464 (59%), Gaps = 23/464 (4%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
AT PGRGGVGIIR+SG S+ E V K K R+A Y F +D+G+ IYF
Sbjct: 11 ATAPGRGGVGIIRVSGSLAKSVAEKVVGKIPK---VRYADYVPFKSLAGEQLDQGIAIYF 67
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP++L MLL EI K G+RLA PGEF++RAF+N+KLDL
Sbjct: 68 AGPNSFTGEDVLELQGHGGPVVLDMLLK---EISKIEGVRLAKPGEFSERAFMNDKLDLT 124
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLINA++E AAKSA+ SL G+FSK I L++K+I+LR +E + DFP+E +
Sbjct: 125 QAEAIADLINATSEQAAKSALQSLQGEFSKHIETLVEKVIHLRMYVEAAIDFPDEEIDF- 183
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L I +L + Q K+ +++R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 184 LSDGKVSGDLDAIIAQLNTVTDQAKQGSIMREGMRVVIAGRPNAGKSSLLNALAGREAAI 243
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG ++++ + VE+IGIER W E+ +
Sbjct: 244 VTEIAGTTRDVLREHIHIDGMPLHIIDTAG-------LRESPDLVEQIGIERAWDEINQA 296
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D TD K + + P+ + V + NK D SG ++ I
Sbjct: 297 DRVLFMLDGTDTIDTDPHKIWPEFMAKLPVGLGVTVIRNKADLSGDVVGMDQNQQYPVIS 356
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA GI L+R L I E ++AR RH+ +L A Y+L +++
Sbjct: 357 LSAKNADGIELVREHLKACIGFDGATEGG-FMARRRHLDALEHAAYHLDT-----GKAQL 410
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
E++AE+LR + L+ I G+ T++DLL IFS FCIGK
Sbjct: 411 EMHIAGEILAEELRLTQQYLNEITGEFTSDDLLGKIFSSFCIGK 454
>gi|256823856|ref|YP_003147819.1| tRNA modification GTPase TrmE [Kangiella koreensis DSM 16069]
gi|256797395|gb|ACV28051.1| tRNA modification GTPase TrmE [Kangiella koreensis DSM 16069]
Length = 452
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 205/478 (42%), Positives = 286/478 (59%), Gaps = 33/478 (6%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
+T I IATPPGRGGVGIIR+SGK+ I +++ K+ +K R ATY F +
Sbjct: 1 MTSQDTIAAIATPPGRGGVGIIRVSGKDATKISQVILGKS---IKVREATYLPFLDHLGH 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
ID+G+ I FKAP+S+TGEDV+EL GHGGP+IL MLL + S G R+A PGEF++R
Sbjct: 58 TIDQGIAILFKAPNSFTGEDVLELQGHGGPVILDMLLKEVV----SAGARIARPGEFSER 113
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI +++E AA+SAM SL G+FS +N L++ LI+LR +E +
Sbjct: 114 AFLNDKLDLAQAEAIADLIESTSEQAARSAMRSLQGEFSNKVNQLVESLIHLRIYVEAAI 173
Query: 182 DFPEENQELILN---KNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKS 238
DFPEE + + + + D + +I K+L K QQG +++R G+ VV+ G+PN GKS
Sbjct: 174 DFPEEEIDFLSDGKVQTDLYA-IIDAIKQLKKEAQQG---SILREGMTVVIAGKPNAGKS 229
Query: 239 SLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEK 298
SL N+L G + AIVT IAGTTRD + + I I+ I DTAG ++++ + VEK
Sbjct: 230 SLLNTLAGKESAIVTEIAGTTRDVLREHIHIDGLPVHIIDTAG-------LRESDDTVEK 282
Query: 299 IGIERTWVELKNSDIIIYVQDA----RYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGH 354
IGIER W E+ +D I+ V DA ++ H + D K ++ V NK+D +
Sbjct: 283 IGIERAWQEIDKADQIVLVADASETHQFVPH-EIDPAFTKFEQFKDKLLIVANKVDLT-D 340
Query: 355 QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
Q + + LSA GI L+NTL D++ QT E S ++AR RH+ ++ A
Sbjct: 341 QLELPDATEYKVLPLSAKTGQGIEELKNTLKDIVGFKQTSEGS-FIARRRHLDAIERALL 399
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Y + + EL+A++LR LS I G+ T +DLL IFS FCIGK
Sbjct: 400 YCENGRQQLEVYHAG-----ELLADELRQAQNALSEITGEFTADDLLGRIFSSFCIGK 452
>gi|344941647|ref|ZP_08780935.1| tRNA modification GTPase mnmE [Methylobacter tundripaludum SV96]
gi|344262839|gb|EGW23110.1| tRNA modification GTPase mnmE [Methylobacter tundripaludum SV96]
Length = 448
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 198/468 (42%), Positives = 279/468 (59%), Gaps = 31/468 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IATPPG GGVGIIR+SG + EI K L PR A YSSF + ++ID G+
Sbjct: 9 IAAIATPPGNGGVGIIRVSG---ALVPEIAKHLVNKALTPRLAQYSSFTDDDGSVIDSGI 65
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++YF AP SYTGED++EL GHGG ++L MLL L S+G RLA PGEFT+RAFLN+K
Sbjct: 66 ILYFLAPASYTGEDILELQGHGGSVVLDMLLRRVL----SLGARLANPGEFTERAFLNDK 121
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EA+ DLI +STE + +SA S+ G FS IN L+++L LR +E + DF +E
Sbjct: 122 LDLAQAEAVADLIESSTEQSVRSAQKSMQGVFSVQINELVEELTELRIYVEAAIDFVDEE 181
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L N ++KI ++ +I + ++ L+R+G+ VVL G+PN GKSSL N+L G
Sbjct: 182 IDF-LTDGVVENRIVKILHRIGEIQKTAQQGRLLRDGMTVVLAGKPNAGKSSLLNALAGH 240
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + IQ++ I DTAG ++++ N +E+ GI R E
Sbjct: 241 EAAIVTDIAGTTRDVLKERIQLDGMPLHIIDTAG-------LRESDNAIEQEGIRRAHEE 293
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANI 367
+KN+D I+ + DAR + + ++K P + ++NKID G + I I
Sbjct: 294 IKNADKILLLIDAREAET----ESLLKTLPSGGNITQIYNKIDLLGLKPEIKQTELGTQI 349
Query: 368 YLSASKRIGINLLRNTLLDLI---EKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
YLS G+ LL+ L + E T + ++AR RHI +LN+ + ++ A+ +
Sbjct: 350 YLSIKTGDGMELLKQHLKQSVGFNEATDNV----FIARRRHIEALNKGHEFVESALDQLR 405
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
S+ EL+AEDLR L+ I GK T++DLL IFS FCIGK
Sbjct: 406 GSQAG-----ELVAEDLRQAQNSLAEITGKFTSDDLLGKIFSSFCIGK 448
>gi|66048357|ref|YP_238198.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. syringae
B728a]
gi|81307750|sp|Q4ZL12.1|MNME_PSEU2 RecName: Full=tRNA modification GTPase MnmE
gi|63259064|gb|AAY40160.1| tRNA modification GTPase trmE [Pseudomonas syringae pv. syringae
B728a]
Length = 456
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 196/470 (41%), Positives = 276/470 (58%), Gaps = 26/470 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT GRGGVGIIR+SG E + +T LKPRFA Y F ++D+G+
Sbjct: 8 IAAIATAQGRGGVGIIRVSGPLAGKAAEAIIGRT---LKPRFAHYGPFVDGTGQVLDEGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P+S+TGEDV+EL GHGGPI+L MLL CL++G RLA PGEF++RAFLN+K
Sbjct: 65 ALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS----RLARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+ AA++A+ SL G FS+ ++ L +KLI+LR +E + DFPEE
Sbjct: 121 LDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + + N L ++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDFLADGH-VLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ + DTAG+ D ++VE IG++R
Sbjct: 240 EAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQ-------DQVEMIGVQRALKA 292
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYK-NN 363
+ +D I+ V DA + D + ++ P V + NK D SG N+ +
Sbjct: 293 IGEADRILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKADLSGDPINLQTSVDG 352
Query: 364 IANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKI 422
I LSA S G+ LLR L + QT ESS + AR RH+ +L A+ L
Sbjct: 353 HVTISLSARSGGEGLELLREHLKACMGYEQTSESS-FSARRRHLEALRHASDSLEH---- 407
Query: 423 INQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 408 -GRAQLTLAGAGELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|386326714|ref|YP_006022831.1| tRNA modification GTPase mnmE [Shewanella baltica BA175]
gi|333820859|gb|AEG13525.1| tRNA modification GTPase mnmE [Shewanella baltica BA175]
Length = 458
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 281/474 (59%), Gaps = 35/474 (7%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG + V K R+A Y F + +ID+G+
Sbjct: 11 IVAQATAPGRGGVGIIRISGDKASDVAMAVLGHLPK---TRYADYCDFKSASGQVIDQGI 67
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++FK P+S+TGEDV+EL GHGG I+L ML+ +E+G G+R+A PGEF+++AF+N+K
Sbjct: 68 ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVG---GIRIAKPGEFSEQAFMNDK 124
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AAKSA+ SL G+FSK ++ L+D++ NLR +E + DFP+E
Sbjct: 125 LDLTQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPDEE 184
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ N L KI KL + K+ ++IR G+ VV+ G+PN GKSSL N+L G
Sbjct: 185 VDF-LSDGKIANALYKIIDKLDLVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGK 243
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D + VE+IGIER W E
Sbjct: 244 ESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRD-------TTDTVEQIGIERAWNE 296
Query: 308 LKNSDIIIYVQD----ARYDKHT---DFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
+ ++D ++++ D A D HT DF + P N+ V + NK D +G +
Sbjct: 297 INSADRVLFMVDGTTTADVDPHTIWPDF----VDRLPSNLGVTVIRNKADLTGEDLMMTE 352
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
+ + +SA +G+ L+ L L+ +E ++AR RH+ +L A +L
Sbjct: 353 EQGYSVYRISAKTGLGVEELKQHLKSLMGYQSNLEGG-FIARRRHLEALELAAGHLQLG- 410
Query: 421 KIINQSEKNFEKNL--ELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ E L EL+AE+LR C LS I G+ T++DLL IFS FCIGK
Sbjct: 411 ------KEQLEVYLAGELLAEELRMCQLALSEITGRFTSDDLLGKIFSSFCIGK 458
>gi|71735987|ref|YP_277292.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|416019758|ref|ZP_11566517.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. glycinea
str. B076]
gi|416023713|ref|ZP_11567961.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. glycinea
str. race 4]
gi|422406678|ref|ZP_16483701.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. glycinea
str. race 4]
gi|123634468|sp|Q48BF3.1|MNME_PSE14 RecName: Full=tRNA modification GTPase MnmE
gi|71556540|gb|AAZ35751.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|320321683|gb|EFW77782.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. glycinea
str. B076]
gi|320331115|gb|EFW87086.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330881913|gb|EGH16062.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 456
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 194/470 (41%), Positives = 276/470 (58%), Gaps = 26/470 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT GRGGVGI+R+SG E + +T LKPRFA Y F ++D+G+
Sbjct: 8 IAAIATAQGRGGVGIVRVSGPLAGRAAEAIIGRT---LKPRFAHYGPFVDDAGQVLDEGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P+S+TGEDV+EL GHGGPI+L MLL CL++G RLA PGEF++RAFLN+K
Sbjct: 65 ALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS----RLARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+ AA++A+ SL G FS+ ++ L +KLI+LR +E + DFPEE
Sbjct: 121 LDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + + N L ++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDFLADGH-VLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ + DTAG+ D ++VE IG++R
Sbjct: 240 EAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQ-------DQVEMIGVQRALKA 292
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYK-NN 363
+ +D I+ V DA + D + ++ P V + NK D SG ++ +
Sbjct: 293 IGEADRILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKADLSGDPIDLQTSVDG 352
Query: 364 IANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKI 422
I LSA S G+ LLR L + QT ESS + AR RH+ +L A+ L
Sbjct: 353 HVTISLSARSGGAGLELLREHLKACMGYEQTSESS-FSARRRHLEALRHASDSLEH---- 407
Query: 423 INQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 408 -GRAQLTLAGAGELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|395650532|ref|ZP_10438382.1| tRNA modification GTPase TrmE [Pseudomonas extremaustralis 14-3
substr. 14-3b]
Length = 456
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 192/477 (40%), Positives = 282/477 (59%), Gaps = 26/477 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M I +AT GRGGVGI+R+SG + E + + ++LKPR+A Y F +
Sbjct: 1 MSAPRETIAAVATAQGRGGVGIVRISGPLAGKVAEAI---SGRELKPRYAHYGPFLDADK 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+++D+GL IYF P+S+TGEDV+EL GHGGP++L MLL CL++G RLA PGEF++
Sbjct: 58 SVLDEGLAIYFPGPNSFTGEDVLELQGHGGPVVLDMLLQRCLQLG----CRLARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G FS ++ L ++LI+LR +E +
Sbjct: 114 RAFLNDKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSLRVHNLTEQLISLRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + + + + L K++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDFLADGH-VLAMLDKVRDELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + ++VEKIG
Sbjct: 233 LNALAGREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTD-------DQVEKIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
+ER + +D ++ V DA + D + ++ P V + NK D +G
Sbjct: 286 VERALKAIGEADRVLLVVDATAPEAVDPFALWPEFLEQRPDPAKVTLIRNKADLTGEAIA 345
Query: 358 INY-KNNIANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYY 415
+ ++ I LSA S G+ LLR L + QT ESS + AR RH+ +L A+
Sbjct: 346 MQTSEDGHVTISLSAKSAGDGLELLREHLKACMGYEQTSESS-FSARRRHLEALRHASAA 404
Query: 416 LSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L +++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 405 LEH-----GRAQLTLAGAGELLAEDLRQAQQLLGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|359442202|ref|ZP_09232076.1| tRNA modification GTPase MnmE [Pseudoalteromonas sp. BSi20429]
gi|392535926|ref|ZP_10283063.1| tRNA modification GTPase TrmE [Pseudoalteromonas arctica A 37-1-2]
gi|358035985|dbj|GAA68325.1| tRNA modification GTPase MnmE [Pseudoalteromonas sp. BSi20429]
Length = 454
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 196/464 (42%), Positives = 275/464 (59%), Gaps = 23/464 (4%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
AT PGRGGVGIIR+SG S+ E V K K R+A Y F +D+G+ IYF
Sbjct: 11 ATAPGRGGVGIIRVSGSLAKSVAEKVVGKIPK---VRYADYVPFKSLAGEQLDQGIAIYF 67
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP++L MLL EI K G+RLA PGEF++RAF+N+KLDL
Sbjct: 68 AGPNSFTGEDVLELQGHGGPVVLDMLLK---EISKIEGVRLAKPGEFSERAFMNDKLDLT 124
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLINA++E AAKSA+ SL G+FSK I L++K+I+LR +E + DFP+E +
Sbjct: 125 QAEAIADLINATSEQAAKSALQSLQGEFSKHIETLVEKVIHLRMYVEAAIDFPDEEIDF- 183
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L I +L + Q K+ +++R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 184 LSDGKVSGDLDAIITQLNTVTNQAKQGSIMREGMRVVIAGRPNAGKSSLLNALAGREAAI 243
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG ++++ + VE+IGIER W E+ +
Sbjct: 244 VTEIAGTTRDVLREHIHIDGMPLHIIDTAG-------LRESPDRVEQIGIERAWDEINQA 296
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D TD K + + P + V + NK D SG + + I
Sbjct: 297 DRVLFMLDGTDTIDTDPHKIWPEFMAKLPEGMGVTVIRNKADLSGDIVGMEQEQQYPVIS 356
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA GI L+R L I E ++AR RH+ +L A Y+L +++
Sbjct: 357 LSAKNADGIELVREHLKACIGFQGATEGG-FMARRRHLDALESAAYHLET-----GKTQL 410
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
E++AE+LR + L+ I G+ T++DLL IFS FCIGK
Sbjct: 411 EMHIAGEILAEELRLTQQYLNEITGEFTSDDLLGKIFSSFCIGK 454
>gi|359450311|ref|ZP_09239765.1| tRNA modification GTPase MnmE [Pseudoalteromonas sp. BSi20480]
gi|358043860|dbj|GAA76014.1| tRNA modification GTPase MnmE [Pseudoalteromonas sp. BSi20480]
Length = 454
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 197/464 (42%), Positives = 277/464 (59%), Gaps = 23/464 (4%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
AT PGRGGVGIIR+SG S+ E V K K R+A Y F N + +D+G+ IYF
Sbjct: 11 ATAPGRGGVGIIRVSGSLAKSVAEKVIGKIPK---VRYADYVPFKNLNGDQLDQGIAIYF 67
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP++L MLL EI K G+RLA PGEF++RAF+N+KLDL
Sbjct: 68 AGPNSFTGEDVLELQGHGGPVVLDMLLK---EISKIEGVRLAKPGEFSERAFMNDKLDLT 124
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLINA++E AAKSA+ SL G+FSK I L++K+I+LR +E + DFP+E +
Sbjct: 125 QAEAISDLINATSEQAAKSALQSLQGEFSKHIETLVEKVIHLRMYVEAAIDFPDEEIDF- 183
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L I +L + Q K+ +++R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 184 LSDGKVSGDLNAIINQLNTVTDQAKQGSIMREGMRVVIAGRPNAGKSSLLNALAGREAAI 243
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG ++++ + VE+IGIER W E+ +
Sbjct: 244 VTEIAGTTRDVLREHIHIDGMPLHIIDTAG-------LRESPDRVEQIGIERAWDEINQA 296
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D TD K + + P + V + NK D SG ++ I
Sbjct: 297 DRVLFMLDGTDTVDTDPHKIWPEFMAKLPKGMGVTVIRNKADLSGDIVGLDENQQYPVIS 356
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA GI L+R L I E ++AR RH+ +L A Y+L +++
Sbjct: 357 LSAKNAEGIELVREHLKACIGFDGATEGG-FMARRRHLDALESAAYHLDTG-----KTQL 410
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
E++AE+LR + L+ I G+ T++DLL IFS FCIGK
Sbjct: 411 EMHVAGEILAEELRLTQQFLNEITGEFTSDDLLGKIFSSFCIGK 454
>gi|94501615|ref|ZP_01308132.1| tRNA modification GTPase [Bermanella marisrubri]
gi|94426298|gb|EAT11289.1| tRNA modification GTPase [Oceanobacter sp. RED65]
Length = 455
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 190/470 (40%), Positives = 283/470 (60%), Gaps = 27/470 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IATPPGRGGVGI+R+SGK +I + + + K RFA Y F +N+ ++D+GL
Sbjct: 8 IAAIATPPGRGGVGIVRVSGKKAKAIAQQILGF---EPKVRFAHYCPFKDENDEVLDEGL 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F+ P+S+TGEDV+EL GHGGP+IL LL L ++G R A PGEF++RAFLN+K
Sbjct: 65 ALFFEGPNSFTGEDVLELQGHGGPVILDFLLQRVL----ALGARAARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI++++E AA+ A+ SL G FS+ + L+D LINLR +E + DFPEE
Sbjct: 121 MDLTQAEAIADLIDSASEQAARCAVRSLQGAFSQRVKELVDALINLRIYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L ++ L ++ Q+ + +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDF-LSDGKVEADLHQVMDALKQVQQEANQGSILREGMTVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
D AIVT IAGTTRD + + I I+ I DTAG+ D +EVE+IGIER W E
Sbjct: 240 DTAIVTHIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAP-------DEVERIGIERAWQE 292
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIP----VIYVWNKIDYSGHQKNIN-YKN 362
++ +D ++ + D+ TD K I F +P + + NK+D + + ++
Sbjct: 293 IEQADRVLLMVDSTETDATD-PKSIWPEFVDKLPHPERITVIRNKVDLTNEKAGMDEATQ 351
Query: 363 NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKI 422
N + L+A + G+ LR L ++ + T E ++AR RHI +LN+A+ +L
Sbjct: 352 NSPIVRLAAKQGDGVTELREHLKTIMGYSATSEGG-FIARRRHIEALNQADTFLQSGRDQ 410
Query: 423 INQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AEDLR L+ I G+ +++DLL IF FCIGK
Sbjct: 411 LLGAAAG-----ELLAEDLRMAQNALNEITGEFSSDDLLGKIFGSFCIGK 455
>gi|332533705|ref|ZP_08409564.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pseudoalteromonas
haloplanktis ANT/505]
gi|332036869|gb|EGI73330.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pseudoalteromonas
haloplanktis ANT/505]
Length = 454
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 196/464 (42%), Positives = 275/464 (59%), Gaps = 23/464 (4%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
AT PGRGGVGIIR+SG S+ E V K K R+A Y F +D+G+ IYF
Sbjct: 11 ATAPGRGGVGIIRVSGSLAKSVAEKVVGKIPK---VRYADYVPFKSLAGEQLDQGIAIYF 67
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP++L MLL EI K G+RLA PGEF++RAF+N+KLDL
Sbjct: 68 AGPNSFTGEDVLELQGHGGPVVLDMLLK---EISKIEGVRLAKPGEFSERAFMNDKLDLT 124
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLINA++E AAKSA+ SL G+FSK I L++K+I+LR +E + DFP+E +
Sbjct: 125 QAEAIADLINATSEQAAKSALQSLQGEFSKHIETLVEKVIHLRMYVEAAIDFPDEEIDF- 183
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L I +L + Q K+ +++R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 184 LSDGKVSGDLDTIITQLNTVTNQAKQGSIMREGMRVVIAGRPNAGKSSLLNALAGREAAI 243
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG ++++ + VE+IGIER W E+ +
Sbjct: 244 VTEIAGTTRDVLREHIHIDGMPLHIIDTAG-------LRESPDRVEQIGIERAWDEINQA 296
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D TD K + + P + V + NK D SG + + I
Sbjct: 297 DRVLFMLDGTDTIDTDPHKIWPEFMAKLPEGMGVTVIRNKADLSGDIVGMEQEQQYPVIS 356
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA GI L+R L I Q ++AR RH+ +L A Y+L +++
Sbjct: 357 LSAKNADGIELVREHLKACI-GFQGATEGGFMARRRHLDALESAAYHLET-----GKTQL 410
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
E++AE+LR + L+ I G+ T++DLL IFS FCIGK
Sbjct: 411 EMHIAGEILAEELRLTQQYLNEITGEFTSDDLLGKIFSSFCIGK 454
>gi|153002874|ref|YP_001368555.1| tRNA modification GTPase TrmE [Shewanella baltica OS185]
gi|166234820|sp|A6WUK3.1|MNME_SHEB8 RecName: Full=tRNA modification GTPase MnmE
gi|151367492|gb|ABS10492.1| tRNA modification GTPase TrmE [Shewanella baltica OS185]
Length = 453
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 281/474 (59%), Gaps = 35/474 (7%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG + V K R+A Y F + +ID+G+
Sbjct: 6 IVAQATAPGRGGVGIIRISGDKASDVAMAVLGHLPK---TRYADYCDFKSASGQVIDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++FK P+S+TGEDV+EL GHGG I+L ML+ +E+G G+R+A PGEF+++AF+N+K
Sbjct: 63 ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVG---GIRIAKPGEFSEQAFMNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AAKSA+ SL G+FSK ++ L+D++ NLR +E + DFP+E
Sbjct: 120 LDLTQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPDEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ N L KI KL + K+ ++IR G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 VDF-LSDGKIANALYKIIDKLDLVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D + VE+IGIER W E
Sbjct: 239 ESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRD-------TTDTVEQIGIERAWNE 291
Query: 308 LKNSDIIIYVQD----ARYDKHT---DFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
+ ++D ++++ D A D HT DF + P N+ V + NK D +G +
Sbjct: 292 INSADRVLFMVDGTTTAAVDPHTIWPDF----VDRLPSNLGVTVIRNKADLTGEDLMMTE 347
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
+ + +SA +G+ L+ L L+ +E ++AR RH+ +L A +L
Sbjct: 348 EQGYSVYRISAKTGLGVEELKQHLKSLMGYQSNLEGG-FIARRRHLEALELAAGHLQLG- 405
Query: 421 KIINQSEKNFEKNL--ELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ E L EL+AE+LR C LS I G+ T++DLL IFS FCIGK
Sbjct: 406 ------KEQLEVYLAGELLAEELRMCQLALSEITGRFTSDDLLGKIFSSFCIGK 453
>gi|259910299|ref|YP_002650655.1| tRNA modification GTPase TrmE [Erwinia pyrifoliae Ep1/96]
gi|224965921|emb|CAX57454.1| tRNA modification GTPase [Erwinia pyrifoliae Ep1/96]
Length = 454
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 191/468 (40%), Positives = 280/468 (59%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ ATPPGRGGVGI+R+SG + +++ K K PR+A Y F + + +D+G+
Sbjct: 7 IVAQATPPGRGGVGILRVSGHKAAGVAQLLLGKLPK---PRYADYLPFRDADGSTLDQGI 63
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++RAFLN+K
Sbjct: 64 ALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILSL---PGLRIANPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSAVNSLQGVFSTRVNRLVEALTHLRIYVEAAIDFPDEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDF-LSDGKIEAQLHQVIDSLDAVRSEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWHE 292
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D TD + I P +PV V NK D +G K + +
Sbjct: 293 IEQADHVLFMVDGTTTDATDPAEIWPDFIARLPETLPVTVVRNKADITGEIKGVEKVSAH 352
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
+ I LSA GI LR+ L + + +E +LAR RH+ +L A YL +
Sbjct: 353 SLIRLSARTGEGIENLRDHLKLSMGFSGNMEGG-FLARRRHLQALELAATYLQQGKHQLL 411
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AE+LR + LS I G+ +++DLL IFS FCIGK
Sbjct: 412 AARAG-----ELLAEELRMAQQALSEITGEFSSDDLLGRIFSSFCIGK 454
>gi|373951691|ref|ZP_09611652.1| tRNA modification GTPase mnmE [Shewanella baltica OS183]
gi|373888291|gb|EHQ17183.1| tRNA modification GTPase mnmE [Shewanella baltica OS183]
Length = 453
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 281/474 (59%), Gaps = 35/474 (7%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG + V K R+A Y F + +ID+G+
Sbjct: 6 IVAQATAPGRGGVGIIRISGDKASDVAMAVLGHLPK---TRYADYCDFKSASGQVIDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++FK P+S+TGEDV+EL GHGG I+L ML+ +E+G G+R+A PGEF+++AF+N+K
Sbjct: 63 ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVG---GIRIAKPGEFSEQAFMNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AAKSA+ SL G+FSK ++ L+D++ NLR +E + DFP+E
Sbjct: 120 LDLTQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPDEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ N L KI KL + K+ ++IR G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 VDF-LSDGKIANALYKIIDKLDLVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D + VE+IGIER W E
Sbjct: 239 ESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRD-------TTDTVEQIGIERAWNE 291
Query: 308 LKNSDIIIYVQD----ARYDKHT---DFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
+ ++D ++++ D A D HT DF + P N+ V + NK D +G +
Sbjct: 292 INSADRVLFMVDGTTTADVDPHTIWPDF----VDRLPSNLGVTVIRNKADLTGEDLMMTE 347
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
+ + +SA +G+ L+ L L+ +E ++AR RH+ +L A +L
Sbjct: 348 EQGYSVYRISAKTGLGVEELKQHLKSLMGYQSNLEGG-FIARRRHLEALELAAGHLQLG- 405
Query: 421 KIINQSEKNFEKNL--ELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ E L EL+AE+LR C LS I G+ T++DLL IFS FCIGK
Sbjct: 406 ------KEQLEVYLAGELLAEELRMCQLALSEITGRFTSDDLLGKIFSSFCIGK 453
>gi|254876714|ref|ZP_05249424.1| tRNA modification GTPase trmE [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254842735|gb|EET21149.1| tRNA modification GTPase trmE [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 450
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 211/478 (44%), Positives = 297/478 (62%), Gaps = 34/478 (7%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M TK++ I+ +ATP G GG+GI+R+SG + SI E K TKK+L PR+AT+ + + N
Sbjct: 1 MYTKDT-IVAVATPQGNGGIGIVRISGSDALSIAE---KLTKKRLIPRYATFCNIY-NTN 55
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
IID G+VI+F +P+SYTGEDV+E+ HG P IL++++ + LE G R+A GEFT+
Sbjct: 56 EIIDHGIVIFFNSPNSYTGEDVVEIQAHGNPFILNLIIKATLEYGA----RMANAGEFTE 111
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EA+ D+INAS+E+AAKSA SL G FSK IN LL+KLI LR +E S
Sbjct: 112 RAFLNSKLDLTQAEAVADIINASSETAAKSAAKSLQGDFSKEINNLLEKLIYLRMYVEAS 171
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE L N L I K +L + K+ A++ G+ ++L+G+PN GKSSL
Sbjct: 172 IDFPEEEINF-LEDQKIHNSLQDIYKTILDVKNSCKQGAILVEGITLILVGKPNAGKSSL 230
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVTSIAGTTRD + + IQIN I DTAG ++ + + +E G
Sbjct: 231 LNALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAG-------LRSSDDIIESEG 283
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFD--KKIIKNF----PMNIPVIYVWNKIDYSGH 354
I+R +++ +D I++V D + F K II F P +I + YV NKID
Sbjct: 284 IKRAIKKIQEADQILFVTDDYTNSQVKFSDIKDIIPEFYHQIPKDIDITYVHNKIDLL-K 342
Query: 355 QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ +N+ N +IY+SA IGI+ L++ +L + T T S Y ARERH+ +++ A
Sbjct: 343 EVPLNHNN---HIYISAESNIGIDKLKDHILAKVGYT-TQNESIYTARERHVTAIDNAFD 398
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ A E+ N EL+AE+L E L+SI G+ +++DLL IFS FCIGK
Sbjct: 399 HIKLA------KEQLELGNGELLAEELLIVQEHLNSITGEFSSDDLLGEIFSSFCIGK 450
>gi|188535566|ref|YP_001909363.1| tRNA modification GTPase TrmE [Erwinia tasmaniensis Et1/99]
gi|254811484|sp|B2VCE7.1|MNME_ERWT9 RecName: Full=tRNA modification GTPase MnmE
gi|188030608|emb|CAO98503.1| tRNA modification GTPase TrmE [Erwinia tasmaniensis Et1/99]
Length = 454
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 188/468 (40%), Positives = 282/468 (60%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ ATPPGRGGVGI+R+SG + +++ K K PR+A Y F + + +D+G+
Sbjct: 7 IVAQATPPGRGGVGILRVSGSKAAEVAQLLLGKLPK---PRYADYLPFRDADGSTLDQGI 63
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F P+S+TGEDV+E GHGGP+IL +LL L + GLR+A PGEF++RAFLN+K
Sbjct: 64 ALWFPGPNSFTGEDVLEFQGHGGPVILDLLLKRILSL---PGLRIANPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E
Sbjct: 121 LDLAQAEAIADLIDASSEQAARSAVNSLQGVFSTRVNHLVEALTHLRIYVEAAIDFPDEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L ++ L ++ + ++ +L+R G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDF-LSDGKIEAQLHQVIHNLAEVRSEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWHE 292
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D + T+ + I P ++PV V NK D +G + + N
Sbjct: 293 IEQADHVLFMVDGTTTEATNPAEIWPDFIARLPESLPVTVVRNKADITGETRGVEEVNGH 352
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
+ I LSA GI LR+ L + + +E +LAR RH+ +L A +L +
Sbjct: 353 SLIRLSARTGEGIENLRDHLKSSMGFSGNMEGG-FLARRRHLQALELAATHLEQGKHQLL 411
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AE+LR + LS I G+ +++DLL IFS FCIGK
Sbjct: 412 AAWAG-----ELLAEELRLAQQALSEITGEFSSDDLLGRIFSSFCIGK 454
>gi|402701184|ref|ZP_10849163.1| tRNA modification GTPase TrmE [Pseudomonas fragi A22]
gi|169635754|emb|CAQ16331.1| t-RNA modification GTPase protein [Pseudomonas syringae Lz4W]
Length = 458
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 189/481 (39%), Positives = 286/481 (59%), Gaps = 32/481 (6%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKK-TKKQLKPRFATYSSFFCKN 59
M I +AT GRGGVGI+R+SG + I K ++++LKPR+A Y F+ +N
Sbjct: 1 MSVAAETIAAVATAQGRGGVGIVRISGP----LASIAAKAFSERELKPRYAHYGPFYGEN 56
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFT 119
++D+G+ +YF P+S+TGEDV+EL GHGGPI+L MLL C+++G RLA PGEF+
Sbjct: 57 REVLDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCIQLG----CRLARPGEFS 112
Query: 120 KRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEF 179
+RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G FS+ ++ L ++LI LR +E
Sbjct: 113 ERAFLNDKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVHNLTEQLIGLRIYVEA 172
Query: 180 SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
+ DFPEE + + + + L K++++L ++++ + AL+R+G+ VV+ G+PN GKSS
Sbjct: 173 AIDFPEEEIDFLADGH-VLGMLDKVRQELSTVMREAGQGALLRDGMTVVIAGRPNAGKSS 231
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + ++VEKI
Sbjct: 232 LLNALAGREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTD-------DQVEKI 284
Query: 300 GIERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356
G++R + +D ++ V DA + D + ++ P V + NK D +G
Sbjct: 285 GVQRALKAIGEADRVLLVVDATAPEADDPFALWPEFLQQRPDPAKVTLIRNKADLTGEDI 344
Query: 357 NINYKNNIANIYLSASKRI-----GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNE 411
+ ++ ++ +S S R G+ LLR+ L + QT ESS + AR RH+ +L
Sbjct: 345 RLQVCDD-GHVTISLSARSTDAGDGLELLRDHLKACMGYEQTSESS-FSARRRHLEALRH 402
Query: 412 ANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIG 471
A+ L +++ EL+AEDLR L I G +++DLL IFS FCIG
Sbjct: 403 ASDALEH-----GRAQLTLAGAGELLAEDLRQAQHSLGEITGAFSSDDLLGRIFSSFCIG 457
Query: 472 K 472
K
Sbjct: 458 K 458
>gi|424065236|ref|ZP_17802716.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. avellanae
str. ISPaVe013]
gi|408003581|gb|EKG43751.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. avellanae
str. ISPaVe013]
Length = 456
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 194/472 (41%), Positives = 279/472 (59%), Gaps = 30/472 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT GRGGVGI+R+SG E + +T LKPRFA Y F ++D+G+
Sbjct: 8 IAAIATAQGRGGVGIVRVSGPLAGKAAEAIIGRT---LKPRFAHYGPFIDDAGQVLDEGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P+S+TGEDV+EL GHGGPI+L MLL CL++G RLA PGEF++RAFLN+K
Sbjct: 65 ALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS----RLARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+ AA++AM SL G FS+ ++ L +KLI+LR +E + DFPEE
Sbjct: 121 LDLAQAEAIADLIEASSAQAARNAMRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + + N L ++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDFLADGH-VLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ + DTAG+ D ++VE IG++R
Sbjct: 240 EAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQ-------DQVEMIGVQRALKA 292
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
+ +D I+ V DA + D + ++ P V + NK D SG I+ + ++
Sbjct: 293 IGEADRILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKADLSG--DPIDLRTSV 350
Query: 365 -ANIYLSASKRI---GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
++ +S S R G+ LLR L + QT ESS + AR RH+ +L A+ L
Sbjct: 351 DGHVTISLSARSGGEGLELLREHLKACMGYEQTSESS-FSARRRHLEALRHASDSLEH-- 407
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 408 ---GRAQLTLAGAGELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|315634810|ref|ZP_07890092.1| tRNA modification GTPase TrmE [Aggregatibacter segnis ATCC 33393]
gi|315476362|gb|EFU67112.1| tRNA modification GTPase TrmE [Aggregatibacter segnis ATCC 33393]
Length = 451
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 194/468 (41%), Positives = 279/468 (59%), Gaps = 24/468 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGG+GI+R+SG + V K K PR A Y F + ++D+G+
Sbjct: 5 IVAQATAPGRGGIGILRVSGPKAADVAHAVLGKCPK---PRMADYLPFKDADGTVLDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK P+S+TGEDV+EL GHGG ++L +LL L G+RLA PGEF+++AFLN+K
Sbjct: 62 TLYFKGPNSFTGEDVLELQGHGGQVVLDLLLKRIL---LIDGIRLARPGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AA+SA+ SL G+FS +N L+D +I LRT +E + DFP+E
Sbjct: 119 LDLAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEE 178
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L L I +L ++ + K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 179 IDF-LADGKIEGHLNGIIAQLDQVRAEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGR 237
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D +EVE+IGI R W E
Sbjct: 238 EAAIVTDIAGTTRDVLREHIHLDGMPLHIIDTAGLRDAT-------DEVERIGISRAWNE 290
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D I+ + D+ D D K + + P NIPV + NK D +G + + ++
Sbjct: 291 IEQADRILLMLDSS-DSEQDLAKVRSEFLAKLPNNIPVTIIRNKADLTGETERLYEQDGY 349
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
+ LSA + G++LLR L + IE +LAR RH+ +L +A +L +
Sbjct: 350 TVVNLSAKTQQGVDLLREHLKQAMGYQTGIEGG-FLARRRHLEALEQAAQHLQTGHIQLT 408
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q EL+AE+LR + LS I G+ T++DLL NIFS FCIGK
Sbjct: 409 QFHAG-----ELLAEELRMVQDALSEITGQFTSDDLLTNIFSSFCIGK 451
>gi|70733512|ref|YP_263287.1| tRNA modification GTPase TrmE [Pseudomonas protegens Pf-5]
gi|123651832|sp|Q4K396.1|MNME_PSEF5 RecName: Full=tRNA modification GTPase MnmE
gi|68347811|gb|AAY95417.1| tRNA modification GTPase TrmE [Pseudomonas protegens Pf-5]
Length = 456
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 193/470 (41%), Positives = 282/470 (60%), Gaps = 26/470 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT GRGGVGI+R+SG + + + + ++LKPRFA Y F + ++D+G+
Sbjct: 8 IAAIATAQGRGGVGIVRISGPLAGAAAKAI---SGRELKPRFAHYGPFLSEQEEVLDEGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
V+YF P+S+TGEDV+EL GHGGPI+L MLL CLE+G RLA PGEF++RAFLN+K
Sbjct: 65 VLYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLELG----CRLARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+ AA++A+ SL G FS+ + L ++LI LR +E + DFPEE
Sbjct: 121 LDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVYNLTEQLIALRIYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + + + L ++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDFLADGH-VLSMLDAVRDELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ + DTAG+ D ++VEKIG+ER
Sbjct: 240 EAAIVTDIAGTTRDILREHIHIDGMPLHVVDTAGLRDTE-------DQVEKIGVERALKA 292
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY-KNN 363
+ +D ++ V DA + D + ++ P V + NK D +G + +
Sbjct: 293 ISEADRVLLVVDATAAEAADPFALWPEFLEQRPDPAKVTLIRNKADLTGEPIALETCDDG 352
Query: 364 IANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKI 422
I LSA + G+ LLR+ L + QT ESS + AR RH+ EA +Y S A++
Sbjct: 353 HVTISLSAMAAGSGLELLRDHLKACMGYEQTSESS-FSARRRHL----EALHYASAALE- 406
Query: 423 INQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 407 HGRAQLTLAGAGELLAEDLRQAQQSLGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|359435231|ref|ZP_09225454.1| tRNA modification GTPase MnmE [Pseudoalteromonas sp. BSi20652]
gi|357918132|dbj|GAA61703.1| tRNA modification GTPase MnmE [Pseudoalteromonas sp. BSi20652]
Length = 488
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 197/468 (42%), Positives = 277/468 (59%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I AT PGRGGVGIIR+SG S+ E V K K R+A Y F +D+G+
Sbjct: 41 IAAQATAPGRGGVGIIRVSGSLAKSVAEKVVGKIPK---VRYADYVPFKSLAGEQLDQGI 97
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
IYF P+S+TGEDV+EL GHGGP++L MLL EI K G+RLA PGEF++RAF+N+K
Sbjct: 98 AIYFAGPNSFTGEDVLELQGHGGPVVLDMLLK---EISKIDGVRLAKPGEFSERAFMNDK 154
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLINA++E AAKSA+ SL G+FSK I L++K+I+LR +E + DFP+E
Sbjct: 155 LDLTQAEAIADLINATSEQAAKSALQSLQGEFSKHIETLVEKVIHLRMYVEAAIDFPDEE 214
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L I +L + Q K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 215 IDF-LSDGKVSGDLDAIITQLNTVTNQAKQGSIMREGMRVVIAGRPNAGKSSLLNALAGR 273
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG ++++ + VE+IGIER W E
Sbjct: 274 EAAIVTEIAGTTRDVLREHIHIDGMPLHIIDTAG-------LRESPDRVEQIGIERAWDE 326
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
+ +D ++++ D TD K + + P + V + NK D SG + +
Sbjct: 327 INQADRVLFMLDGTDTIDTDPHKIWPEFMAKLPEGMGVTVIRNKADLSGDIVGMEQEQQY 386
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA GI L+R L I +E ++AR RH+ +L A Y+L
Sbjct: 387 PVISLSAKNADGIELVREHLKACIGFQGAMEGG-FMARRRHLDALESAAYHLDT-----G 440
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ E++AE+LR + L+ I G+ T++DLL IFS FCIGK
Sbjct: 441 KTQLEMHIAGEILAEELRLTQQYLNEITGEFTSDDLLGKIFSSFCIGK 488
>gi|238797848|ref|ZP_04641340.1| tRNA modification GTPase mnmE [Yersinia mollaretii ATCC 43969]
gi|238718264|gb|EEQ10088.1| tRNA modification GTPase mnmE [Yersinia mollaretii ATCC 43969]
Length = 454
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 191/474 (40%), Positives = 285/474 (60%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ I+ ATPPGRGGVGI+R+SG+ ++ + V K K PR+A Y F + +
Sbjct: 1 MSATDTIVAQATPPGRGGVGILRVSGRAAAAVAQAVLGKLPK---PRYADYLPFKDVDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ +YF P+S+TGEDV+EL GHGGP+IL +LL L + + LR+A PGEF++R
Sbjct: 58 TLDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPE---LRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS I+ L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSVRIHQLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + +L ++ + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEGQLNGVMAELEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D T+ + + P +P+ V NK D +G +
Sbjct: 287 ERAWNEIEQADRVLFMVDGTTTDATEPAAIWPEFMARLPSTLPITVVRNKADITGETLGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N + I LSA GI+LLRN L + T E +LAR RH+ +L A +L
Sbjct: 347 TEVNGHSLIRLSARTGEGIDLLRNHLKQSMGFTSNTEGG-FLARRRHLQALETAAQHLVQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + + EL+AE+LR + LS I G+ +++DLL IFS FCIGK
Sbjct: 406 GHEQLVSAYAG-----ELLAEELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454
>gi|399908134|ref|ZP_10776686.1| tRNA modification GTPase TrmE [Halomonas sp. KM-1]
Length = 456
Score = 345 bits (885), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 272/474 (57%), Gaps = 37/474 (7%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I +ATPPGRGGVGIIR+SG +I E V + +PR A Y F IID+G+
Sbjct: 11 IAALATPPGRGGVGIIRVSGPLCATIAEAVVGH---RPEPRRAHYGPFHGAAG-IIDEGI 66
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF PHS+TGEDV+EL GHGGP+I+ +LL C+++G RLA PGEF++RAFLN+K
Sbjct: 67 ALYFAGPHSFTGEDVLELQGHGGPVIMDLLLERCVQLGA----RLARPGEFSERAFLNDK 122
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+ SAA++A+ SL G+FS+ + L+DKLI LR +E + DFPEE
Sbjct: 123 LDLAQAEAIADLIEASSRSAAENALRSLQGEFSRRVASLVDKLIELRMYVEAAIDFPEEE 182
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + L ++ +L ++ + AL+R G+NVV+ G+PN GKSSL N+L
Sbjct: 183 IDFLADGR-VAEMLAGVQAELAEVRTAAGQGALMREGMNVVIAGRPNAGKSSLLNALTEQ 241
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ + DTAG+ D + VE+IG+ R W E
Sbjct: 242 ETAIVTDIAGTTRDVLREHIHLDGMPLHVIDTAGLRDTP-------DAVEQIGVARAWAE 294
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++ + DA TD + + P + V NKID S Q + +
Sbjct: 295 IEKADRVLLLVDAATTAATDPMAIWPEFVARLPDPTRLTLVRNKIDTSQEQAGFDGADTT 354
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G+ L+ L ++ T T E + AR RH+ +L+ A L+
Sbjct: 355 PVIRLSARTGAGLENLKAHLKAVMGFTATTEGR-FSARRRHLDALDRAQRALT------- 406
Query: 425 QSEKNFEKNL------ELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
N E+ L EL+AEDLR + L I G+ + +DLL IF FCIGK
Sbjct: 407 ----NGEEQLSGYGAGELLAEDLRDAQQALGEITGEFSADDLLGEIFGSFCIGK 456
>gi|431929437|ref|YP_007242471.1| tRNA modification GTPase trmE [Pseudomonas stutzeri RCH2]
gi|431827724|gb|AGA88841.1| tRNA modification GTPase trmE [Pseudomonas stutzeri RCH2]
Length = 455
Score = 345 bits (885), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 187/469 (39%), Positives = 278/469 (59%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I +AT PGRGGVGI+R+SG +I + ++ PR A Y +F + +ID+GL
Sbjct: 8 IAAVATAPGRGGVGIVRVSGPRARAIA---ITLSGREPTPRHAHYGAFHADDGEVIDEGL 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+++F PHS+TGEDV+EL GHGGP++L MLL C+E+G +RLA PGEF++RAFLN+K
Sbjct: 65 LLFFPGPHSFTGEDVLELQGHGGPVVLDMLLQRCVELG----VRLARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+ AA++A+ SL G+FS+ ++ L +KLI LR +E + DFPEE
Sbjct: 121 LDLAQAEAIADLIEASSTQAARNAVRSLQGEFSRRVHQLTEKLIQLRIYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + + +L ++++L ++++ + AL+R+G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDFLADGH-VLEQLNGVREELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ + DTAG+ D ++VE+IG++R
Sbjct: 240 EAAIVTDIAGTTRDVLREHILIDGMPLHVVDTAGLRDTE-------DQVERIGVQRALSA 292
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYK-NN 363
+ +D I+ + DA + D + + P V + NK D SG ++ +
Sbjct: 293 IGEADRILLMVDASAPEAEDPLALWPEFLDFSPEPSRVTLIRNKADLSGEAIALSVSADG 352
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
+ L A GI LLR L + QT ESS + AR RH+ +L A+ +L +
Sbjct: 353 HVTLSLCARSGEGIELLREHLKQCMGYEQTAESS-FSARRRHLDALRLADEHLRHGYDQL 411
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 412 TLAGAG-----ELLAEDLRLAQQALGEITGAFSSDDLLGRIFSSFCIGK 455
>gi|212712606|ref|ZP_03320734.1| hypothetical protein PROVALCAL_03701 [Providencia alcalifaciens DSM
30120]
gi|212684822|gb|EEB44350.1| hypothetical protein PROVALCAL_03701 [Providencia alcalifaciens DSM
30120]
Length = 454
Score = 345 bits (885), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 195/472 (41%), Positives = 287/472 (60%), Gaps = 25/472 (5%)
Query: 5 NSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIID 64
N I+ AT PGRGGVGI+R+SG + E V K K PR+A Y F + +++D
Sbjct: 4 NDTIVAQATAPGRGGVGILRVSGPQAALVAETVLGKLPK---PRYADYLPFRDADGSVLD 60
Query: 65 KGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFL 124
+G+ IYF P+S+TGEDV+EL GHGGP+IL +LL L I +R+A PGEF++RAFL
Sbjct: 61 QGIAIYFPGPNSFTGEDVLELQGHGGPVILDLLLRRILTIAN---IRIANPGEFSERAFL 117
Query: 125 NNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFP 184
N+KLDL Q EAI DLI+AS+E AA+SAM SL G FS I+ L++ L +LR +E + DFP
Sbjct: 118 NDKLDLAQAEAIADLIDASSEQAARSAMNSLQGAFSSHIHQLVEALTHLRIYVEAAIDFP 177
Query: 185 EENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSL 244
+E + L+ +L ++ L ++ Q ++ +L+R G+ VV+ G+PN GKSSL N+L
Sbjct: 178 DEEIDF-LSDGKIEAKLNEVVADLDQVRSQARQGSLLREGMKVVIAGRPNAGKSSLLNAL 236
Query: 245 VGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304
G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER
Sbjct: 237 AGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERA 289
Query: 305 WVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYK 361
W E++ +D ++++ D+ T+ + + + P +PV + NK D +G
Sbjct: 290 WKEIEQADRVLFMVDSTTTDATEPQEIWPEFMARLPETLPVTVIRNKADKTGESVEFVAD 349
Query: 362 NNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI- 420
I LSA + GI+LLR+ L + + E +LAR RH+ +LN A +L+
Sbjct: 350 ARYPLIRLSAREEKGIDLLRDHLKETMGFNSNTEGG-FLARRRHLQALNNAATHLAQGYD 408
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++N ++ EL+AE+LR ++LS I G+ T++DLL IFS FCIGK
Sbjct: 409 QLVNA------RSGELLAEELRLAQQELSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|386826363|ref|ZP_10113470.1| tRNA modification GTPase TrmE [Beggiatoa alba B18LD]
gi|386427247|gb|EIJ41075.1| tRNA modification GTPase TrmE [Beggiatoa alba B18LD]
Length = 444
Score = 345 bits (885), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 198/474 (41%), Positives = 285/474 (60%), Gaps = 32/474 (6%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M + I IATP GRGGVG+IR+SG N+ I + + K K PR+A YS F
Sbjct: 1 MFEQVDTIAAIATPAGRGGVGVIRISGTNVPVIAQSILHKLPK---PRYAAYSQFLNAQG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+ID+G+ +YF APHS+TGE V+EL GHGG +++ LL++ L G RLA PGEF++
Sbjct: 58 ELIDQGIALYFPAPHSFTGEAVLELQGHGGAVVMDQLLAAVLNAGA----RLAQPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN K+DL Q EAI DLI++++ A +SA+ SL G FS+ IN LL++LI LRT IE
Sbjct: 114 RAFLNGKIDLTQAEAIADLIDSASVQAMRSALRSLQGDFSRKINKLLEQLILLRTYIEAG 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DF +E +L L +L +++ + I Q ++ L++ G+++ L+G+PNVGKSSL
Sbjct: 174 IDFVDEEIDL-LADGQVLRQLTELQHTVKAIFNQAQQGFLLKEGVHIALVGEPNVGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N L G + AIVT IAGTTRD + IQ++ I DTAG+ D + + VE+ G
Sbjct: 233 LNCLAGRETAIVTPIAGTTRDIVRDQIQLDGMPLHIIDTAGLRDTD-------DIVEQEG 285
Query: 301 IERTWVELKNSDIIIYVQDARY--DKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
I RT + L+ D++I + D RY D+ T +++ + P P+I + NKID SGH+ I
Sbjct: 286 IRRTKLALQAVDLVILLLDDRYADDQAT---PELLASIPSK-PLI-IRNKIDLSGHEAGI 340
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ + +Y+SA G+ L+ TL + + QT ++AR RH+ +L L
Sbjct: 341 SPQG---MVYISAKTGAGVEDLKQTLRERL-GLQTQTEGTFIARRRHLDALTRTLTALQN 396
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
A+ I+ S +N EL+AE+LR + LS I G+ T +DLL IFS FCIGK
Sbjct: 397 AMSYIH-SYQN-----ELLAEELRLAQQALSEITGEFTPDDLLGQIFSTFCIGK 444
>gi|444378457|ref|ZP_21177655.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Enterovibrio sp.
AK16]
gi|443677443|gb|ELT84126.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Enterovibrio sp.
AK16]
Length = 454
Score = 345 bits (885), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 192/474 (40%), Positives = 282/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
+T + I+ ATPPGRGGVGIIR+SG ++ V T ++L R A Y F + N
Sbjct: 1 MTHSDTIVAQATPPGRGGVGIIRVSGPKAKAVALAV---TGRELPVRRAEYLPFNDEQGN 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ +YF+AP+S+TGEDV+EL GHGGP+I+ ML+ ++I G+R A PGEF++R
Sbjct: 58 ALDQGIALYFQAPNSFTGEDVLELQGHGGPVIMDMLIKRIVDID---GVRTARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AAKSA+ SL G FS +N L++ LI+LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAAKSALQSLQGAFSGKVNTLVEALIHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L I L + + + A++R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKVAADLDNIINSLDDVRKAANQGAIMREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E+ +D ++++ D T ++ + I P NI + + NK D + I
Sbjct: 287 ERAWDEIAQADRVLFMVDGTTTDATSPEEIWPEFIDRLPENIGMTVIRNKADMTDETLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ + I LSA G++ LR L + + E ++AR RH+ +L+ A +L
Sbjct: 347 CHASQPTLIRLSAKTGAGVDALREHLKACMGFSGATEGG-FMARRRHLEALDAAARHLD- 404
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
I + + E++AE+LR + LS I G+ +++DLL IFS FCIGK
Sbjct: 405 ----IGKEQLEGYMAGEILAEELRIAQQHLSEITGEFSSDDLLGRIFSSFCIGK 454
>gi|326797440|ref|YP_004315260.1| tRNA modification GTPase mnmE [Marinomonas mediterranea MMB-1]
gi|326548204|gb|ADZ93424.1| tRNA modification GTPase mnmE [Marinomonas mediterranea MMB-1]
Length = 459
Score = 345 bits (885), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 196/474 (41%), Positives = 279/474 (58%), Gaps = 24/474 (5%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
L I AT PGRGGVGIIRLSG I + + K PR+A Y F N+
Sbjct: 7 LIDQDTIAAQATAPGRGGVGIIRLSGPKSLDIAKAIIGFDPK---PRYAHYVPFKDDNDE 63
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D G+ +YF P+S+TGEDV EL GHGGP+IL ML++ C ++G RLA PGEF++R
Sbjct: 64 QLDMGIALYFPGPNSFTGEDVFELQGHGGPVILDMLMTRC----TALGARLARPGEFSER 119
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+K+DL Q EAI DLI++S+E AAK A+ SL G FSK + L++ LI+LR +E +
Sbjct: 120 AFLNDKMDLTQAEAIADLIDSSSEQAAKCALRSLQGAFSKRVTELVEALIHLRIYVEAAI 179
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFPEE + I EL I+ KL ++++ + AL+R G+NVV+ G+PN GKSSL
Sbjct: 180 DFPEEEIDFI-GDGKVAAELEGIQIKLNAVLKEANQGALLREGMNVVIAGRPNAGKSSLL 238
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G D AIVT+IAGTTRD + + I ++ I DTAG+ D + +EVE+IGI
Sbjct: 239 NTLSGKDSAIVTNIAGTTRDVLREHIHLDGMPLHIIDTAGLRD-------SPDEVEQIGI 291
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
+R W E+ +D I+ + D++ D ++ + + P + V NK+D + +
Sbjct: 292 QRAWDEIHKADRILLMVDSQTVGSKDPEEIWPEFVAQLPSRDKLTLVRNKVDLTKETTGL 351
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N++ + LSA GI+ L L ++ T E ++AR RHI +LN+ N +L
Sbjct: 352 ESINDLPILSLSAKTGQGIDALSQHLKAVMGFESTTEGG-FIARRRHIEALNKTNDFLRS 410
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ F EL+AEDL+ + LS I G+ T++DLL IF FCIGK
Sbjct: 411 G----HEQLHGFGAG-ELLAEDLKEAQQALSEITGEFTSDDLLGRIFGSFCIGK 459
>gi|422639947|ref|ZP_16703375.1| tRNA modification GTPase TrmE [Pseudomonas syringae Cit 7]
gi|440743528|ref|ZP_20922837.1| tRNA modification GTPase TrmE [Pseudomonas syringae BRIP39023]
gi|330952339|gb|EGH52599.1| tRNA modification GTPase TrmE [Pseudomonas syringae Cit 7]
gi|440375293|gb|ELQ12003.1| tRNA modification GTPase TrmE [Pseudomonas syringae BRIP39023]
Length = 456
Score = 345 bits (885), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 194/470 (41%), Positives = 276/470 (58%), Gaps = 26/470 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT GRGGVGI+R+SG E + +T LKPRFA Y F ++D+G+
Sbjct: 8 IAAIATAQGRGGVGIVRVSGPLAGRAAEAIIGRT---LKPRFAHYGPFVDDAGQVLDEGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P+S+TGEDV+EL GHGGPI+L MLL CL++G RLA PGEF++RAFLN+K
Sbjct: 65 ALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS----RLARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+ AA++A+ SL G FS+ ++ L +KLI+LR +E + DFPEE
Sbjct: 121 LDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + + N L ++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDFLADGH-VLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ + DTAG+ D ++VE IG++R
Sbjct: 240 EAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQ-------DQVEMIGVQRALKA 292
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYK-NN 363
+ +D I+ V DA + D + ++ P V + NK D SG ++ +
Sbjct: 293 IGEADRILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKADLSGDPVDLQTSVDG 352
Query: 364 IANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKI 422
I LSA S G+ LLR L + QT ESS + AR RH+ +L A+ L
Sbjct: 353 HVTISLSARSGGEGLELLREHLKACMGYEQTSESS-FSARRRHLEALRHASDSLEH---- 407
Query: 423 INQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 408 -GRAQLTLAGAGELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|387873321|ref|YP_005804710.1| tRNA modification GTPase trmE [Erwinia pyrifoliae DSM 12163]
gi|283480423|emb|CAY76339.1| tRNA modification GTPase trmE [Erwinia pyrifoliae DSM 12163]
Length = 467
Score = 345 bits (885), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 191/468 (40%), Positives = 280/468 (59%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ ATPPGRGGVGI+R+SG + +++ K K PR+A Y F + + +D+G+
Sbjct: 20 IVAQATPPGRGGVGILRVSGHKAAGVAQLLLGKLPK---PRYADYLPFRDADGSTLDQGI 76
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++RAFLN+K
Sbjct: 77 ALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILSL---PGLRIANPGEFSERAFLNDK 133
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E
Sbjct: 134 LDLAQAEAIADLIDASSEQAARSAVNSLQGVFSTRVNRLVEALTHLRIYVEAAIDFPDEE 193
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G
Sbjct: 194 IDF-LSDGKIEAQLHQVIDSLDAVRSEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 252
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E
Sbjct: 253 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWHE 305
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D TD + I P +PV V NK D +G K + +
Sbjct: 306 IEQADHVLFMVDGTTTDATDPAEIWPDFIARLPETLPVTVVRNKADITGEIKGVEKVSAH 365
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
+ I LSA GI LR+ L + + +E +LAR RH+ +L A YL +
Sbjct: 366 SLIRLSARTGEGIENLRDHLKLSMGFSGNMEGG-FLARRRHLQALELAATYLQQGKHQLL 424
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AE+LR + LS I G+ +++DLL IFS FCIGK
Sbjct: 425 AARAG-----ELLAEELRMAQQALSEITGEFSSDDLLGRIFSSFCIGK 467
>gi|409396502|ref|ZP_11247488.1| tRNA modification GTPase TrmE [Pseudomonas sp. Chol1]
gi|409118983|gb|EKM95373.1| tRNA modification GTPase TrmE [Pseudomonas sp. Chol1]
Length = 455
Score = 345 bits (884), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 185/469 (39%), Positives = 278/469 (59%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I +AT PGRGGVGI+R+SG ++ + + ++ PR A Y F + +ID+GL
Sbjct: 8 IAAVATAPGRGGVGIVRVSGPRARALAITL---SGREPTPRHAHYGPFHANDGEVIDEGL 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+++F PHS+TGEDV+EL GHGGP++L LL C+E+G RLA PGEF++RAFLN+K
Sbjct: 65 LLFFPGPHSFTGEDVLELQGHGGPVVLDQLLRRCVELGA----RLARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI AS+ AA++A+ SL G+FS+ ++ L ++LI LR +E + DFPEE
Sbjct: 121 IDLAQAEAIADLIEASSAQAARNAVRSLQGEFSRRVHQLTERLIQLRIYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + + L ++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDFLADGH-VLQLLDGVRNELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ + DTAG ++ ++VE+IG+ER
Sbjct: 240 EAAIVTDIAGTTRDVLREHILIDGMPLHVLDTAG-------LRNTDDQVERIGVERALDA 292
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY-KNN 363
+ ++D ++ V DA + +D + + + P V + NK D +G +N +
Sbjct: 293 IGSADRVLLVVDASSPEASDPLALWPEFLASQPQPDKVTLIRNKADLTGEAVVLNQAADG 352
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
+ L A GI+LLR L + QT ESS + AR RH+ +L A YL +
Sbjct: 353 HVTLSLCAKAGEGIDLLREHLKHCMGYEQTAESS-FSARRRHLDALRLAEQYLQHGHAQL 411
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q+ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 412 TQASAG-----ELLAEDLRLAQQALGEITGAFSSDDLLGRIFSSFCIGK 455
>gi|398997445|ref|ZP_10700270.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM21]
gi|398124087|gb|EJM13610.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM21]
Length = 456
Score = 345 bits (884), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 194/478 (40%), Positives = 280/478 (58%), Gaps = 28/478 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKK-TKKQLKPRFATYSSFFCKN 59
M I +AT GRGGVGI+R+SG + + K + ++LKPRFA Y F N
Sbjct: 1 MSAPRETIAAVATAQGRGGVGIVRISGP----LASLAAKAISGRELKPRFAHYGPFLSAN 56
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFT 119
++D+G+ +YF P+S+TGEDV+EL GHGGPI+L MLL CLE+G RLA PGEF+
Sbjct: 57 EEVLDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLKRCLELG----CRLARPGEFS 112
Query: 120 KRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEF 179
+RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G FS+ ++ L ++LI LR +E
Sbjct: 113 ERAFLNDKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVHNLTEQLIGLRIYVEA 172
Query: 180 SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
+ DFPEE + + + + L K++ +L ++++ + AL+R+G+ VV+ G+PN GKSS
Sbjct: 173 AIDFPEEEIDFLADGH-VLAMLDKVRDELSTVLREAGQGALLRDGMTVVIAGRPNAGKSS 231
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + + VEKI
Sbjct: 232 LLNALAGREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTD-------DHVEKI 284
Query: 300 GIERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356
G+ER + +D ++ V DA + +D + ++ P V + NK D +G
Sbjct: 285 GVERALKAIGEADRVLLVVDATAPEASDPFALWPEFLEIRPDPAKVTLIRNKADLTGEAI 344
Query: 357 NIN-YKNNIANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ ++ I LSA S G+ LLR L + QT ESS + AR RH+ +L A+
Sbjct: 345 ALEISEDGHVTISLSAKSAGEGLELLREHLKACMGYEQTSESS-FSARRRHLEALRHASA 403
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L +++ EL+AEDLR L I G +++DLL IFS FCIGK
Sbjct: 404 SLEH-----GRTQLTLAGAGELLAEDLRQAQHSLGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|53802851|ref|YP_115425.1| tRNA modification GTPase TrmE [Methylococcus capsulatus str. Bath]
gi|81823572|sp|Q602M5.1|MNME_METCA RecName: Full=tRNA modification GTPase MnmE
gi|53756612|gb|AAU90903.1| tRNA modification GTPase TrmE [Methylococcus capsulatus str. Bath]
Length = 448
Score = 345 bits (884), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 190/465 (40%), Positives = 279/465 (60%), Gaps = 25/465 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IATPPG+GGVGI+R+SG NL +++ + + + PR+A + F + ID G+
Sbjct: 9 ITAIATPPGKGGVGIVRISGSNLGPVLDALLGRPPR---PRYAEFRHFLDADGRAIDSGI 65
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF AP S+TGE+V+ELHGHGGP++L +LL L++G RLA PGEF++RA+LN K
Sbjct: 66 ALYFPAPRSFTGENVLELHGHGGPVVLDLLLRRTLQLG----CRLARPGEFSERAYLNGK 121
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI++STE +A+SA SL G+FS I+ L + L+ LRT +E + DF +E+
Sbjct: 122 LDLAQAEAIADLIDSSTEESARSAQRSLQGEFSAHIHHLQECLVRLRTYVEAAIDFSDED 181
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+L L+ +E+ + +L I + + AL+R GL V+ G+PNVGKSSL N+L G
Sbjct: 182 IDL-LDDATLGHEITGLLDELDTIDTKAHQGALLREGLTTVIAGRPNVGKSSLLNALAGR 240
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
D+AIVT I GTTRD + +++Q+ I DTAG+ D I E+ GI R
Sbjct: 241 DLAIVTEIPGTTRDLLRESLQVGGLPLHIVDTAGLRDSEDPI-------EREGIRRARDA 293
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANI 367
L N+D I+ V DAR HT+ + + P IP+I ++NKID +G ++ + I
Sbjct: 294 LANADCILLVCDAR---HTEAGDALPADLPETIPLIRIFNKIDLTGAPASLTVERETTVI 350
Query: 368 YLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSE 427
+LSA G++LLR ++ + E + AR RH+ ++ A ++ A ++
Sbjct: 351 HLSARTGEGVDLLRQEIIRRAGYKKGTEGV-FSARRRHLDAIRRARAAVANARLYLHT-- 407
Query: 428 KNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
K EL+AE+LR + L I G+ T DLL+ IFS FC+GK
Sbjct: 408 ----KTAELLAEELRAAQKALGEITGEFTNEDLLNRIFSSFCLGK 448
>gi|383815557|ref|ZP_09970968.1| tRNA modification GTPase TrmE [Serratia sp. M24T3]
gi|383295589|gb|EIC83912.1| tRNA modification GTPase TrmE [Serratia sp. M24T3]
Length = 454
Score = 345 bits (884), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 195/475 (41%), Positives = 289/475 (60%), Gaps = 37/475 (7%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ ATPPGRGGVGI+R+SG + I + + K K PR+A Y F + + +D+G+
Sbjct: 7 IVAQATPPGRGGVGIVRISGHSASLIAQEILGKLPK---PRYADYLPFRDADGSTLDQGI 63
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F P+S+TGEDV+EL GHGGP+IL +L+ L I G+R+A PGEF++RAFLN+K
Sbjct: 64 ALWFPGPNSFTGEDVLELQGHGGPVILDLLIKRILAI---PGVRIARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+ AA+SA+ SL G FS I+ L++ L NLR +E + DFP+E
Sbjct: 121 LDLAQAEAIADLIDASSVQAARSAVNSLQGAFSTRIHHLVEALTNLRIYVEAAIDFPDE- 179
Query: 188 QELILNKNDFFNELIKIKKKLLKII-------QQGKKRALIRNGLNVVLIGQPNVGKSSL 240
+ DF ++ KI+ KL ++I + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 180 ------EIDFLSD-GKIEAKLNQVIGDLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IG
Sbjct: 233 LNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
IER W E++ +D ++++ D T+ + + P ++P++ V NK D +G
Sbjct: 286 IERAWNEIEQADTVLFMVDGTTTDATEPAEIWPDFMARLPTSLPIVVVRNKADVTGETMG 345
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
N + I LSA GI+LLR L + + Q +E +LAR RH+ +L +A +L
Sbjct: 346 KTEVNGHSLIRLSARTGEGIDLLREHLKESMGFNQNMEGG-FLARRRHLQALEQAAQHL- 403
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ +Q + EL+AE+LR + LS I G+ +++DLL IFS FCIGK
Sbjct: 404 --LQGKDQLLGAWAG--ELLAEELRLSQQSLSEITGEFSSDDLLGRIFSSFCIGK 454
>gi|217975462|ref|YP_002360213.1| tRNA modification GTPase TrmE [Shewanella baltica OS223]
gi|217500597|gb|ACK48790.1| tRNA modification GTPase TrmE [Shewanella baltica OS223]
Length = 453
Score = 344 bits (883), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 280/474 (59%), Gaps = 35/474 (7%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG + V K R+A Y F + +ID+G+
Sbjct: 6 IVAQATAPGRGGVGIIRISGDKASDVAMAVLGHLPK---TRYADYCDFKSASGQVIDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++FK P+S+TGEDV+EL GHGG I+L ML+ +E+G G+R+A PGEF+++AF+N+K
Sbjct: 63 ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVG---GIRIAKPGEFSEQAFMNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AAKSA+ SL G+FSK ++ L+D++ NLR +E + DFP+E
Sbjct: 120 LDLTQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPDEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ N L KI KL + K+ ++IR G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 VDF-LSDGKIANALYKIIDKLDLVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D + VE+IGIER W E
Sbjct: 239 ESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRD-------TTDTVEQIGIERAWNE 291
Query: 308 LKNSDIIIYVQD----ARYDKHT---DFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
+ ++D ++++ D A D H DF + P N+ V + NK D +G +
Sbjct: 292 INSADRVLFMVDGTTTAAVDPHAIWPDF----VDRLPSNLGVTVIRNKADLTGEDLMMTE 347
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
+ + +SA +G+ L+ L L+ +E ++AR RH+ +L A +L
Sbjct: 348 EQGYSVYRISAKTGLGVEELKQHLKSLMGYQSNLEGG-FIARRRHLEALELAAGHLQLG- 405
Query: 421 KIINQSEKNFEKNL--ELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ E L EL+AE+LR C LS I G+ T++DLL IFS FCIGK
Sbjct: 406 ------KEQLEVYLAGELLAEELRMCQLALSEITGRFTSDDLLGKIFSSFCIGK 453
>gi|392310424|ref|ZP_10272958.1| tRNA modification GTPase TrmE [Pseudoalteromonas citrea NCIMB 1889]
Length = 454
Score = 344 bits (883), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 192/468 (41%), Positives = 278/468 (59%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG + E + K K R+A Y F +D+G+
Sbjct: 7 IVAQATAPGRGGVGIIRVSGTLATLVAEQIVGKCPK---TRYAEYLPFNTLQGEQLDQGI 63
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P+S+TGEDV+EL GHGGP+++ MLL +I G+RLA PGEF++RAFLN+K
Sbjct: 64 ALYFAGPNSFTGEDVLELQGHGGPVVIDMLLKEICQIS---GVRLAQPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLINA++E AAKSA+ SL G FS IN L++K+I+LR +E + DFP+E
Sbjct: 121 MDLTQAEAIADLINATSEQAAKSALHSLQGDFSNHINTLVEKVIHLRMYVEAAIDFPDEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L I +L ++ +Q K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDF-LSDGKVSGDLNAIIDQLNEVRKQAKQGSIMREGMRVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D K VE+IGIER W E
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDSPDK-------VEQIGIERAWDE 292
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
+ +D ++++ D HTD + + + P + V V NK+D S + + +
Sbjct: 293 ISQADHVLFMVDGTDTDHTDPMQIWPEFMARLPQGMAVTVVRNKVDLSQEAVGMCQQGDY 352
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
+ LSA GI+LLR+ L I E ++AR RH+ +L + +L I
Sbjct: 353 PVLRLSAKNTDGIDLLRDHLKACIGFQGATEGG-FMARRRHLDALERSAEHLD-----IG 406
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ E++AE+LR + L+ I G+ T++DLL IFS FCIGK
Sbjct: 407 KTQLEMHIAGEILAEELRLTQQYLNEITGEFTSDDLLGKIFSSFCIGK 454
>gi|410629478|ref|ZP_11340178.1| tRNA modification GTPase mnmE [Glaciecola arctica BSs20135]
gi|410150963|dbj|GAC17045.1| tRNA modification GTPase mnmE [Glaciecola arctica BSs20135]
Length = 460
Score = 344 bits (883), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 202/482 (41%), Positives = 289/482 (59%), Gaps = 41/482 (8%)
Query: 3 TKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNI 62
++ I+ AT PGRGGVGIIR+SG + + + K + R A Y F NN+
Sbjct: 8 SQQDTIVAQATAPGRGGVGIIRISGTLASAAAQAILGKLPE---TRKAEYLPFSDTENNL 64
Query: 63 IDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRA 122
ID+G+ ++F+AP+S+TGEDV+EL GHGG ++L MLL++ L+I K LR+A PGEF++RA
Sbjct: 65 IDQGIALFFRAPNSFTGEDVLELQGHGGQVVLDMLLNAILKIPK---LRIARPGEFSERA 121
Query: 123 FLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFD 182
FLN+KLDL Q EAI DLI+AS+E AAK A+ SL G FS+ I L++++I+LR +E + D
Sbjct: 122 FLNDKLDLAQAEAIADLIDASSEQAAKGALRSLQGAFSQHIQTLVEQVIHLRMYVEAAID 181
Query: 183 FPEENQELILNKNDFFNELIKIKKKLLKII-------QQGKKRALIRNGLNVVLIGQPNV 235
FP+E + DF ++ KI+K L II QQ K+ AL+R G+ VV+ G+PN
Sbjct: 182 FPDE-------EIDFLSD-GKIQKDLETIIQSFETLRQQTKQGALLREGMRVVIAGKPNA 233
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKSSL N+L G D AIVT IAGTTRD + + I I+ I DTAG+ D K
Sbjct: 234 GKSSLLNALAGRDAAIVTDIAGTTRDVLKEHIHIDGMPLHIIDTAGLRDSPDK------- 286
Query: 296 VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYS 352
VEKIGIER W E+ +D ++++ D+ T K + + P NI + + NKID S
Sbjct: 287 VEKIGIERAWQEIHQADRVLFMLDSTESTETHPQKIWPEFYQQLPKNIGLSVIRNKIDLS 346
Query: 353 GHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEA 412
+ + I +SAS G+ LL + L D + + E ++AR RH+ +++ A
Sbjct: 347 NETIGFDDSGDYPVISISASNEQGLALLTDHLKDCMGFNASSEGQ-FIARRRHLDAIDRA 405
Query: 413 NYYLSCAIKIINQSEKNFEKNL--ELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCI 470
+L + E+NL EL+AE+LR + L+ I G+ +++DLL IFS FCI
Sbjct: 406 AEHLYLG-------KYQLEENLAGELLAEELRLTQQHLNEITGEFSSDDLLTKIFSSFCI 458
Query: 471 GK 472
GK
Sbjct: 459 GK 460
>gi|334702439|ref|ZP_08518305.1| tRNA modification GTPase TrmE [Aeromonas caviae Ae398]
Length = 453
Score = 344 bits (883), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 192/469 (40%), Positives = 272/469 (57%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGI+R+SG + EIV K + R+A Y F + +D+G+
Sbjct: 6 IVAQATAPGRGGVGIVRVSGPAAERVAEIVLGKLPRV---RYAEYLPFRDEQGQALDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+ FKAP+S+TGEDV+EL GHGGP+IL ML+ L+I G+R A PGEF++RAFLN+K
Sbjct: 63 ALLFKAPNSFTGEDVLELQGHGGPVILDMLIRRILQID---GIRPARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+E AA+SAM SL G+FS + L++ L LR +E + DFP+E
Sbjct: 120 LDLAQAEAIADLIEASSEQAARSAMHSLQGQFSGKVQQLVESLTRLRIYVEAAIDFPDEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L I +L + + K+ AL+R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LSDGKVAGDLYAIMSELDDVRGEAKQGALLREGMKVVIAGRPNAGKSSLLNALAGR 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D K VE+IGIER W E
Sbjct: 239 ESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTQDK-------VEQIGIERAWAE 291
Query: 308 LKNSDIIIYVQDA----RYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNN 363
++ +D ++++ D D H D + + P NI + V NK D +G + +
Sbjct: 292 IEQADRVLFMVDGTTTDAVDPH-DIWPEFVDRLPKNIGLTVVRNKADLTGEDLAPSQEQG 350
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
A +SA +G+ LR L + E ++AR RH+ +L A L ++
Sbjct: 351 HAVYRISAKTELGLPALREHLKACMGFQGNTEGG-FMARRRHLDALERAAERL-----LV 404
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR E LS I G+ +++DLL IFS FCIGK
Sbjct: 405 AREQLEVYVAGELVAEELRLAQESLSEITGEFSSDDLLGRIFSSFCIGK 453
>gi|304413431|ref|ZP_07394904.1| putative GTPase [Candidatus Regiella insecticola LSR1]
gi|304284274|gb|EFL92667.1| putative GTPase [Candidatus Regiella insecticola LSR1]
Length = 457
Score = 344 bits (882), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 197/472 (41%), Positives = 285/472 (60%), Gaps = 23/472 (4%)
Query: 4 KNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN-I 62
+N I+ ATPPGRGGVGI+R+SG ++ + + K PR+A Y F+ +++N I
Sbjct: 6 ENDTIVAQATPPGRGGVGILRISGALASAVAQAILNKLPP---PRYAHYLKFYDEDSNSI 62
Query: 63 IDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRA 122
+D+G+ +YF+ PHS+TGED++EL GHGGPI+L +LL L + GLR+A PGEF +RA
Sbjct: 63 LDQGIALYFQGPHSFTGEDILELQGHGGPIVLDLLLKRILALPLP-GLRIARPGEFLERA 121
Query: 123 FLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFD 182
FLNNK+DL Q EA+ DLINA++E AA+SA+ SL G FS I LI+LR +E + D
Sbjct: 122 FLNNKIDLTQAEAVADLINANSEQAARSAVNSLQGVFSDRIKAFSQNLIDLRAYVEAAMD 181
Query: 183 FPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFN 242
F EE L+ +L I +L K+ + +L+R G+ VV+ G+PN GKSSL N
Sbjct: 182 FSEEEINF-LSDGKIEGQLNNIINELKKVQAAAHQGSLLREGMKVVIAGRPNAGKSSLLN 240
Query: 243 SLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302
+L G + AIVT++AGTTRD + + I I+ I DTAG+ + S+I +EKIGIE
Sbjct: 241 ALAGKESAIVTAVAGTTRDVLREYIHIDGMPLHIIDTAGLRE-TSEI------IEKIGIE 293
Query: 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKN 362
R W E++N+D ++++ D+ + T D ++I P +P+I V NKID + Q +
Sbjct: 294 RAWHEIENADSLLFIVDSSSTEATLPDPELIARLPTTLPIIVVRNKIDMTDEQCGLTEVK 353
Query: 363 NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIK- 421
I LSA GI L+ L + TQ E +LAR RH+ +L +A +L+ +
Sbjct: 354 GYPVIRLSAKTGQGIENLQQYLKKSMGFTQHPEGH-FLARRRHLDALEKALKHLNNGHEQ 412
Query: 422 -IINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+I Q+ EL+AE+LR L I G+ +++DLL IFS FCIGK
Sbjct: 413 LVIMQAG-------ELLAEELRLAQSALEEITGEFSSDDLLGEIFSNFCIGK 457
>gi|440738485|ref|ZP_20918016.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens BRIP34879]
gi|447919192|ref|YP_007399760.1| tRNA modification GTPase TrmE [Pseudomonas poae RE*1-1-14]
gi|440381021|gb|ELQ17567.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens BRIP34879]
gi|445203055|gb|AGE28264.1| tRNA modification GTPase TrmE [Pseudomonas poae RE*1-1-14]
Length = 456
Score = 344 bits (882), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 190/477 (39%), Positives = 282/477 (59%), Gaps = 26/477 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M I +AT GRGGVGI+R+SG +++ + ++LKPR+A Y F +
Sbjct: 1 MSAPRETIAAVATAQGRGGVGIVRISGPLAGRAAQLI---SGRELKPRYAHYGPFLDADK 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+++D+GL +YF P+S+TGEDV+EL GHGGP++L MLL CL++G RLA PGEF++
Sbjct: 58 SVLDEGLALYFPGPNSFTGEDVLELQGHGGPVVLDMLLQRCLQLG----CRLARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G FS ++ L ++LI+LR +E +
Sbjct: 114 RAFLNDKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSLRVHNLTEQLISLRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + + + + L K++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDFLADGH-VLAMLDKVRDELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + ++VEKIG
Sbjct: 233 LNALAGREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTD-------DQVEKIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
+ER + +D ++ V DA + D + ++ P V + NK D +G
Sbjct: 286 VERALKAIGEADRVLLVVDATAPEAVDPFALWPEFLEQRPDPAKVTLIRNKADLTGEAIA 345
Query: 358 INYK-NNIANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYY 415
+ + I LSA S G+ LLR+ L + QT ESS + AR RH+ +L A+
Sbjct: 346 METSADGHVTISLSAKSSGAGLELLRDHLKACMGYEQTSESS-FSARRRHLEALRHASAA 404
Query: 416 LSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L +++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 405 LEH-----GRAQLTLAGAGELLAEDLRQAQQLLGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|387896520|ref|YP_006326817.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens A506]
gi|387164080|gb|AFJ59279.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens A506]
Length = 456
Score = 344 bits (882), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 192/478 (40%), Positives = 283/478 (59%), Gaps = 28/478 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKK-TKKQLKPRFATYSSFFCKN 59
M I +AT GRGGVGI+R+SG + + K + ++LKPR+A Y F +
Sbjct: 1 MSAPRETIAAVATAQGRGGVGIVRISGP----LAGVAAKAISGRELKPRYAHYGQFLDAD 56
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFT 119
++++D+GL IYF P+S+TGEDV+EL GHGGP++L MLL CL++G RLA PGEF+
Sbjct: 57 HSVLDEGLAIYFPGPNSFTGEDVLELQGHGGPVVLDMLLQRCLQLG----CRLARPGEFS 112
Query: 120 KRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEF 179
+RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G FS ++ L ++LI+LR +E
Sbjct: 113 ERAFLNDKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSLRVHNLTEQLISLRIYVEA 172
Query: 180 SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
+ DFPEE + + + + L K++ +L ++++ + AL+R+G+ VV+ G+PN GKSS
Sbjct: 173 AIDFPEEEIDFLADGH-VLAMLDKVRDELSTVLREAGQGALLRDGMTVVIAGRPNAGKSS 231
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + ++VEKI
Sbjct: 232 LLNALAGREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTD-------DQVEKI 284
Query: 300 GIERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356
G+ER + +D ++ V DA + D + ++ P V + NK D +G
Sbjct: 285 GVERALKAISEADRVLLVVDATAPEAVDPFALWPEFLEQRPDPAKVTLIRNKADLTGEAI 344
Query: 357 NINY-KNNIANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ ++ I LSA S G+ LLR L + QT ESS + AR RH+ +L A+
Sbjct: 345 ALETSEDGHVTISLSAKSAGEGLELLREHLKACMGYEQTSESS-FSARRRHLEALRHASA 403
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L +++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 404 ALEH-----GRAQLTLAGAGELLAEDLRQAQQLLGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|410085815|ref|ZP_11282530.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Morganella morganii
SC01]
gi|421493126|ref|ZP_15940484.1| TRME [Morganella morganii subsp. morganii KT]
gi|455737650|ref|YP_007503916.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Morganella morganii
subsp. morganii KT]
gi|400192754|gb|EJO25892.1| TRME [Morganella morganii subsp. morganii KT]
gi|409767760|gb|EKN51834.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Morganella morganii
SC01]
gi|455419213|gb|AGG29543.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Morganella morganii
subsp. morganii KT]
Length = 461
Score = 344 bits (882), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 195/468 (41%), Positives = 280/468 (59%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ ATPPGRGGVGI+R+SG + +IV K K R+A Y F + ++D+G+
Sbjct: 14 IVAQATPPGRGGVGILRVSGPQAAQVAQIVLGKLPK---ARYADYLPFRDETGKVLDQGI 70
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
I+F P+S+TGEDV+EL GHGGP+IL +LL L +R+A PGEF++RAFLN+K
Sbjct: 71 AIFFPGPNSFTGEDVLELQGHGGPVILDLLLKRIL---LIDNIRIANPGEFSERAFLNDK 127
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AA+SAM SL G FS ++ +++ L NLR +E + DFP+E
Sbjct: 128 LDLAQAEAIADLIDASSEQAARSAMNSLQGAFSGEVHQMVEALTNLRIYVEAAIDFPDEE 187
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L + L ++ Q ++ +L+R G+ VV+ G+PN GKSSL N+L G
Sbjct: 188 IDF-LSDGVIEAKLDTVIADLERVRSQARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 246
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E
Sbjct: 247 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREAGDEVERIGIERAWQE 299
Query: 308 LKNSDIIIYVQDA-RYDKHTDFD--KKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
+ +D ++++ D D+ T + + P IPV + NK D +G I +N
Sbjct: 300 IAQADRVLFMVDGTTVDEQTPEQIWPEFMSRLPAGIPVTIIRNKTDITGETTGITERNGD 359
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA + GI+LLR+ L + E +LAR RH+ +LN A +L I
Sbjct: 360 TLIKLSAREGHGIDLLRDHLKTTMGFEGNTEGG-FLARRRHLQALNTAAEHL-----ISG 413
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ ++ EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 414 HEQLVVARSGELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 461
>gi|424069904|ref|ZP_17807346.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. avellanae
str. ISPaVe037]
gi|408001628|gb|EKG41923.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. avellanae
str. ISPaVe037]
Length = 456
Score = 344 bits (882), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 193/470 (41%), Positives = 277/470 (58%), Gaps = 26/470 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT GRGGVGI+R+SG E + +T LKPRFA Y F ++D+G+
Sbjct: 8 IAAIATAQGRGGVGIVRVSGPLAGKAAEAIIGRT---LKPRFAHYGPFVDDAGQVLDEGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P+S+TGEDV+EL GHGGPI+L MLL CL++G RLA PGEF++RAFLN+K
Sbjct: 65 ALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS----RLARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+ AA++A+ SL G FS+ ++ L +KLI+LR +E + DFPEE
Sbjct: 121 LDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + + N L ++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL N++ G
Sbjct: 181 IDFLADGH-VLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNAMAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ + DTAG+ D ++VE IG++R
Sbjct: 240 EAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQ-------DQVEMIGVQRALKA 292
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYK-NN 363
+ +D I+ V DA + D + ++ P V + NK D SG ++ +
Sbjct: 293 IGEADRILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKADLSGDPIDLQTSVDG 352
Query: 364 IANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKI 422
I LSA S G+ LLR+ L + QT ESS + AR RH+ +L A+ L
Sbjct: 353 HVTISLSARSGGEGLELLRDHLKACMGYEQTSESS-FSARRRHLEALRHASDSLEH---- 407
Query: 423 INQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 408 -GRAQLTLAGAGELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|423694460|ref|ZP_17668980.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens SS101]
gi|387999390|gb|EIK60719.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens SS101]
Length = 456
Score = 344 bits (882), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 192/478 (40%), Positives = 283/478 (59%), Gaps = 28/478 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKK-TKKQLKPRFATYSSFFCKN 59
M I +AT GRGGVGI+R+SG + + K + ++LKPR+A Y F +
Sbjct: 1 MSAPRETIAAVATAQGRGGVGIVRISGP----LAGVAAKAISGRELKPRYAHYGQFLDAD 56
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFT 119
++++D+GL IYF P+S+TGEDV+EL GHGGP++L MLL CL++G RLA PGEF+
Sbjct: 57 HSVLDEGLAIYFPGPNSFTGEDVLELQGHGGPVVLDMLLQRCLQLG----CRLARPGEFS 112
Query: 120 KRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEF 179
+RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G FS ++ L ++LI+LR +E
Sbjct: 113 ERAFLNDKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSLRVHNLTEQLISLRIYVEA 172
Query: 180 SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
+ DFPEE + + + + L K++ +L ++++ + AL+R+G+ VV+ G+PN GKSS
Sbjct: 173 AIDFPEEEIDFLADGH-VLAMLDKVRDELSTVLREAGQGALLRDGMTVVIAGRPNAGKSS 231
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + ++VEKI
Sbjct: 232 LLNALAGREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTD-------DQVEKI 284
Query: 300 GIERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356
G+ER + +D ++ V DA + D + ++ P V + NK D +G
Sbjct: 285 GVERALKAISEADRVLLVVDATAPEAVDPFALWPEFLEQRPDPAKVTLIRNKADLTGEAI 344
Query: 357 NINY-KNNIANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ ++ I LSA S G+ LLR L + QT ESS + AR RH+ +L A+
Sbjct: 345 ALETSEDGHVTISLSAKSAGDGLELLREHLKACMGYEQTSESS-FSARRRHLEALRHASA 403
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L +++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 404 ALEH-----GRAQLTLAGAGELLAEDLRQAQQLLGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|397168838|ref|ZP_10492274.1| tRNA modification GTPase TrmE [Alishewanella aestuarii B11]
gi|396089425|gb|EJI86999.1| tRNA modification GTPase TrmE [Alishewanella aestuarii B11]
Length = 465
Score = 344 bits (882), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 189/468 (40%), Positives = 278/468 (59%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I +AT PGR GVGIIR+SG ++ + K K R+A Y F+ N I+D+G+
Sbjct: 18 IAALATAPGRAGVGIIRISGPATKAVANAILHKLPKS---RYAEYLPFYAANKQILDQGI 74
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P+S+TGEDV+EL GHGGP++L MLL L +R+A PGEF++RAFLN+K
Sbjct: 75 ALYFPGPNSFTGEDVLELQGHGGPVLLDMLLKQVL---AQPNVRIARPGEFSERAFLNDK 131
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AA+SAM SL G+FSK I+ L++K+I+LR +E + DFP+E
Sbjct: 132 LDLAQAEAIADLIDASSEQAARSAMQSLQGEFSKRIHQLVEKVIHLRMYVEAAIDFPDEE 191
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L +I L ++ +Q + +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 192 IDF-LSDGKVAADLAEIIDDLAQVRKQATQGSILREGMKVVIAGRPNAGKSSLLNALAGR 250
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D ++VE+IGI R W E
Sbjct: 251 EAAIVTEIAGTTRDVLREHIHIDGMPLHIIDTAGLRDTE-------DQVEQIGIARAWQE 303
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
+ +D ++++ D+ TD + I P + + + NK D +G + +
Sbjct: 304 IAKADRVLFMVDSTTTADTDPHAIWPEFIDRLPPGLGITVIRNKADLTGESLQPDELAAV 363
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
LSA GI+ LR L I + E S +LAR RH+ +L+ A +L+ I
Sbjct: 364 PVYPLSAKTGAGIDALREHLKRCIGFDASTEGS-FLARRRHLDALDRAAEHLA-----IG 417
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 418 QEQLHSFIAGEILAEELRLSQQHLNEITGEFSSDDLLGRIFSSFCIGK 465
>gi|297581962|ref|ZP_06943882.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae RC385]
gi|297533829|gb|EFH72670.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae RC385]
Length = 464
Score = 344 bits (882), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 190/468 (40%), Positives = 279/468 (59%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT GRGGVGIIR+SG + + V +T L+PR+A Y F ++ +D+G+
Sbjct: 17 IVAQATALGRGGVGIIRVSGPLSAHVAQTVTGRT---LRPRYAEYLPFTDEDGQQLDQGI 73
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F PHS+TGEDV+EL GHGGP+++ ML+ L+I G+R A PGEF++ AFLN+K
Sbjct: 74 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIK---GVRPARPGEFSEHAFLNDK 130
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+E AAKSA+ SL G+FSK I+ L++ LI+LR +E + DFPEE
Sbjct: 131 MDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE 190
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 191 IDF-LADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 249
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D + + VEKIGIER W E
Sbjct: 250 ESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DAVEKIGIERAWEE 302
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D + TD + P NI + + NK D +G I + N
Sbjct: 303 IRQADRVLFMVDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQP 362
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
I LSA G++ LR L + + + E ++AR RH+ +L A +L+ I
Sbjct: 363 TLIRLSAKTGQGVDALRQHLKECMGFSGNQEGG-FMARRRHLDALERAAEHLA-----IG 416
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + E++AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 417 QQQLEGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 464
>gi|119471653|ref|ZP_01614038.1| tRNA modification GTPase [Alteromonadales bacterium TW-7]
gi|119445432|gb|EAW26719.1| tRNA modification GTPase [Alteromonadales bacterium TW-7]
Length = 454
Score = 344 bits (882), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 196/464 (42%), Positives = 276/464 (59%), Gaps = 23/464 (4%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
AT PGRGGVGIIR+SG S+ E V K K R+A Y F N + +D+G+ IYF
Sbjct: 11 ATAPGRGGVGIIRVSGSLAKSVAEKVIGKIPK---VRYADYVPFKNLNGDQLDQGIAIYF 67
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP++L MLL EI K +RLA PGEF++RAF+N+KLDL
Sbjct: 68 AGPNSFTGEDVLELQGHGGPVVLDMLLK---EISKIESVRLAKPGEFSERAFMNDKLDLT 124
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLINA++E AAKSA+ SL G+FSK I L++K+I+LR +E + DFP+E +
Sbjct: 125 QAEAISDLINATSEQAAKSALQSLQGEFSKHIETLVEKVIHLRMYVEAAIDFPDEEIDF- 183
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L I +L + Q K+ +++R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 184 LSDGKVSGDLDAIINQLNTVTDQAKQGSIMREGMRVVIAGRPNAGKSSLLNALAGREAAI 243
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG ++++ + VE+IGIER W E+ +
Sbjct: 244 VTEIAGTTRDVLREHIHIDGMPLHIIDTAG-------LRESPDRVEQIGIERAWDEINQA 296
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D TD K + + P + V + NK D SG ++ I
Sbjct: 297 DRVLFMLDGTDTVDTDPHKIWPEFMAKLPKGMGVTVIRNKADLSGDIVGLDENQQYPVIS 356
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA GI L+R L I E ++AR RH+ +L A Y+L +++
Sbjct: 357 LSAKNAEGIELVREHLKACIGFDGATEGG-FMARRRHLDALESAAYHLDTG-----KTQL 410
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
E++AE+LR + L+ I G+ T++DLL IFS FCIGK
Sbjct: 411 EMHVAGEILAEELRLTQQFLNEITGEFTSDDLLGKIFSSFCIGK 454
>gi|443645605|ref|ZP_21129455.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. syringae
B64]
gi|443285622|gb|ELS44627.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. syringae
B64]
Length = 456
Score = 343 bits (881), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 192/471 (40%), Positives = 277/471 (58%), Gaps = 28/471 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT GRGGVGI+R+SG E + +T LKPRFA Y F ++D+G+
Sbjct: 8 IAAIATAQGRGGVGIVRVSGPLAGKAAEAIIGRT---LKPRFAHYGPFVDVAGQVLDEGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P+S+TGEDV+EL GHGGPI+L MLL CL++G RLA PGEF++RAFLN+K
Sbjct: 65 ALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS----RLARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+ AA++A+ SL G FS+ ++ L +KLI+LR +E + DFPEE
Sbjct: 121 LDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + + N L ++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDFLADGH-VLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ + DTAG+ D ++VE IG++R
Sbjct: 240 EAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQ-------DQVEMIGVQRALKA 292
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
+ +D I+ V DA + D + ++ P V + NK D SG ++ +
Sbjct: 293 IGEADRILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKADLSGDPVDLQTSVD- 351
Query: 365 ANIYLSASKRI---GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIK 421
++ +S S R G+ LLR L + QT ESS + AR RH+ +L A+ L
Sbjct: 352 GHVTISMSARSGGEGLELLREHLKACMGYEQTSESS-FSARRRHLEALRHASDSLEH--- 407
Query: 422 IINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 408 --GRAQLTLAGAGELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|385786608|ref|YP_005817717.1| tRNA modification GTPase trmE [Erwinia sp. Ejp617]
gi|310765880|gb|ADP10830.1| tRNA modification GTPase trmE [Erwinia sp. Ejp617]
Length = 467
Score = 343 bits (881), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 189/468 (40%), Positives = 280/468 (59%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ ATPPGRGGVGI+R+SG + +++ K K PR+A + F + + +D+G+
Sbjct: 20 IVAQATPPGRGGVGILRVSGHKAAGVAQLLLGKLPK---PRYADFLPFRDADGSTLDQGI 76
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++RAFLN+K
Sbjct: 77 ALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILSL---PGLRIANPGEFSERAFLNDK 133
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E
Sbjct: 134 LDLAQAEAIADLIDASSEQAARSAVNSLQGVFSTRVNHLVEALTHLRIYVEAAIDFPDEE 193
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G
Sbjct: 194 IDF-LSDGKIEAQLHQVIDSLEAVRSEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 252
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E
Sbjct: 253 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWHE 305
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D TD + I P +PV V NK D +G + + +
Sbjct: 306 IEQADHVLFMVDGTTTDATDPAEIWPDFIARLPETLPVTVVRNKADITGETRGVEKVSTN 365
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
+ I LSA GI LR+ L + + +E +LAR RH+ +L A YL +
Sbjct: 366 SLIRLSARTGEGIENLRDHLKLSMGFSGNMEGG-FLARRRHLQALELAATYLQQGKHQLL 424
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AE+LR + LS I G+ +++DLL IFS FCIGK
Sbjct: 425 AARAG-----ELLAEELRMAQQALSEITGEFSSDDLLGRIFSSFCIGK 467
>gi|422021266|ref|ZP_16367779.1| tRNA modification GTPase TrmE [Providencia sneebia DSM 19967]
gi|414099735|gb|EKT61374.1| tRNA modification GTPase TrmE [Providencia sneebia DSM 19967]
Length = 454
Score = 343 bits (881), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 285/474 (60%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
+ N I+ ATPPGRGGVGI+R+SG + E V K K R+A Y F +
Sbjct: 1 MQTNDTIVAQATPPGRGGVGILRVSGAKAALVAETVLGKLPK---ARYADYLPFRDVDGT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ I+F P+S+TGEDV+EL GHGGP+IL +LL L I G+R+A PGEF++R
Sbjct: 58 VLDQGIAIFFPGPNSFTGEDVLELQGHGGPVILDLLLRRILTIE---GIRIANPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SAM SL G FS I+ +++ L LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSAMNSLQGAFSSQIHQMVEALTTLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L ++ L ++ Q + +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAKLDEVIADLAQVRSQAHQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHT---DFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D+ T D + + P ++P+ + NK D +G Q
Sbjct: 287 ERAWKEIEQADRVLFMLDSTTTDATEPQDIWPEFMARLPESLPLTVIRNKADKTGEQIEF 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
I LSA + GI+LLR+ L + + +E +LAR RH+ +L+ A +L+
Sbjct: 347 IENERYPLIRLSAREEKGIDLLRDHLKETMGFNSNMEGG-FLARRRHLQALDAAATHLAR 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ ++ EL+AE+LR ++LS I G+ T++DLL IFS FCIGK
Sbjct: 406 -----GHEQLVVARSGELLAEELRLAQQELSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|388467445|ref|ZP_10141655.1| tRNA modification GTPase TrmE [Pseudomonas synxantha BG33R]
gi|388011025|gb|EIK72212.1| tRNA modification GTPase TrmE [Pseudomonas synxantha BG33R]
Length = 456
Score = 343 bits (881), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 191/478 (39%), Positives = 283/478 (59%), Gaps = 28/478 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKK-TKKQLKPRFATYSSFFCKN 59
M I +AT GRGGVGI+R+SG + + K + ++LKPR+A Y F +
Sbjct: 1 MSAPRETIAAVATAQGRGGVGIVRISGP----LAGVAAKAISGRELKPRYAHYGQFLDAD 56
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFT 119
+++D+GL IYF P+S+TGEDV+EL GHGGP++L MLL CL++G RLA PGEF+
Sbjct: 57 QSVLDEGLAIYFPGPNSFTGEDVLELQGHGGPVVLDMLLQRCLQLG----CRLARPGEFS 112
Query: 120 KRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEF 179
+RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G FS ++ L ++LI+LR +E
Sbjct: 113 ERAFLNDKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSLRVHNLTEQLISLRIYVEA 172
Query: 180 SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
+ DFPEE + + + + L K++++L ++++ + AL+R+G+ VV+ G+PN GKSS
Sbjct: 173 AIDFPEEEIDFLADGH-VLAMLDKVREELSTVLREAGQGALLRDGMTVVIAGRPNAGKSS 231
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + ++VEKI
Sbjct: 232 LLNALAGREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTD-------DQVEKI 284
Query: 300 GIERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356
G+ER + +D ++ V DA + D + ++ P V + NK D +G
Sbjct: 285 GVERALKAIGEADRVLLVVDATAPEAVDPFALWPEFLEQRPDPAKVTLIRNKADLTGEAI 344
Query: 357 NINY-KNNIANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ ++ I LSA + G+ LLR L + QT ESS + AR RH+ +L A+
Sbjct: 345 ALQTSEDGHVTISLSAKAAGDGLELLREHLKACMGYEQTSESS-FSARRRHLEALRHASA 403
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L +++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 404 ALEH-----GRAQLTLAGAGELLAEDLRQAQQLLGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|440719850|ref|ZP_20900273.1| tRNA modification GTPase TrmE [Pseudomonas syringae BRIP34876]
gi|440728145|ref|ZP_20908364.1| tRNA modification GTPase TrmE [Pseudomonas syringae BRIP34881]
gi|440362252|gb|ELP99452.1| tRNA modification GTPase TrmE [Pseudomonas syringae BRIP34881]
gi|440367090|gb|ELQ04159.1| tRNA modification GTPase TrmE [Pseudomonas syringae BRIP34876]
Length = 456
Score = 343 bits (881), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 194/470 (41%), Positives = 275/470 (58%), Gaps = 26/470 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT GRGGVGI+RLSG E + +T LKPRFA Y F ++D+G+
Sbjct: 8 IAAIATAQGRGGVGIVRLSGPLAGKAAEAIIGRT---LKPRFAHYGPFVDDAGQVLDEGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P+S+TGEDV+EL GHGGPI+L MLL CL++G RLA PGEF++RAFLN+K
Sbjct: 65 ALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS----RLARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+ AA++A+ SL G FS+ ++ L +KLI+LR +E + DFPEE
Sbjct: 121 LDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + + L ++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDFLADGH-VLKMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ + DTAG+ D ++VE IG++R
Sbjct: 240 EAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQ-------DQVEMIGVQRALKA 292
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYK-NN 363
+ +D I+ V DA + D + ++ P V + NK D SG ++ +
Sbjct: 293 IGEADRILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKADLSGDPVDLQTSVDG 352
Query: 364 IANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKI 422
I LSA S G+ LLR L + QT ESS + AR RH+ +L A+ L
Sbjct: 353 HVTISLSARSGGEGLELLREHLKACMGYEQTSESS-FSARRRHLEALRHASDSLEH---- 407
Query: 423 INQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 408 -GRAQLTLAGAGELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|422628648|ref|ZP_16693856.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. pisi str.
1704B]
gi|330937305|gb|EGH41313.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. pisi str.
1704B]
Length = 456
Score = 343 bits (881), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 194/470 (41%), Positives = 275/470 (58%), Gaps = 26/470 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT GRGGVGI+R+SG E + +T LKPRFA Y F ++D+G+
Sbjct: 8 IAAIATAQGRGGVGIVRVSGPLAGKAAEAIIGRT---LKPRFAHYGPFVDDAGQVLDEGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P+S+TGEDV+EL GHGGPI+L MLL CL++G RLA PGEF++RAFLN+K
Sbjct: 65 ALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS----RLARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+ AA++A+ SL G FS+ ++ L +KLI+LR +E + DFPEE
Sbjct: 121 LDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + + N L + +L ++++ + AL+R+G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDFLADGH-VLNMLDDARAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ + DTAG+ D ++VE IG++R
Sbjct: 240 EAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQ-------DQVEMIGVQRALKA 292
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYK-NN 363
+ +D I+ V DA + D + ++ P V + NK D SG ++ +
Sbjct: 293 IGEADRILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKADLSGDPVDLQTSVDG 352
Query: 364 IANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKI 422
I LSA S G+ LLR L + QT ESS + AR RH+ +L A+ L
Sbjct: 353 HVTISLSARSGGEGLELLREHLKACMGYEQTSESS-FSARRRHLEALRHASDSLEH---- 407
Query: 423 INQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 408 -GRAQLTLAGAGELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|359787419|ref|ZP_09290469.1| tRNA modification GTPase TrmE [Halomonas sp. GFAJ-1]
gi|359295320|gb|EHK59593.1| tRNA modification GTPase TrmE [Halomonas sp. GFAJ-1]
Length = 456
Score = 343 bits (881), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 189/468 (40%), Positives = 272/468 (58%), Gaps = 25/468 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I +ATPPGRGGVGIIR+SG I + PRFA Y SF I D+G+
Sbjct: 11 ITALATPPGRGGVGIIRVSGPACRDIASAILGHCPA---PRFAHYGSFNGAEGTI-DEGI 66
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+ F P S+TGEDV+EL GHGGPII+ MLL CL++G RLA PGEF++RAFLN+K
Sbjct: 67 ALLFNGPSSFTGEDVLELQGHGGPIIMDMLLERCLQLGA----RLARPGEFSERAFLNDK 122
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+ SAA++A+ SL G+FS+ ++ L+ +LI LR +E + DFPEE
Sbjct: 123 LDLAQAEAIADLIDASSRSAAENAVRSLQGEFSQRVSALVQRLIELRVYVEAAIDFPEEE 182
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + + L +++ L + + + AL+R G++VV+ G+PN GKSSL N+L
Sbjct: 183 IDFLADGH-VAQHLAGVQQALADVRKAAGQGALLREGMSVVIAGRPNAGKSSLLNALTEQ 241
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
D AIVT IAGTTRD + + I I+ I DTAG+ D + VEKIG+ R W E
Sbjct: 242 DTAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDTP-------DAVEKIGVARAWEE 294
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++ + DA + TD + + P + V NKID + Q I+
Sbjct: 295 IEKADRVLLLVDAATTETTDPMTIWPEFVARLPDKARLTLVRNKIDTNAEQAGIDLSTTT 354
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
+ LSA G++ L+ L +++ + T E + AR RH+++L+ A L
Sbjct: 355 PTLRLSAKTGEGVDSLKAHLKEIMGFSTTTEGR-FSARRRHLNALDRAMTALET-----G 408
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ + EL+AEDLR + L I G+ + +DLL IF FCIGK
Sbjct: 409 RAQLDGYGAGELLAEDLRDAQQALGEITGEFSADDLLGEIFGSFCIGK 456
>gi|331007811|ref|ZP_08330916.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [gamma
proteobacterium IMCC1989]
gi|330418378|gb|EGG92939.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [gamma
proteobacterium IMCC1989]
Length = 471
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 199/475 (41%), Positives = 285/475 (60%), Gaps = 32/475 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN-IIDKG 66
I IAT PGRGGVGIIR+SG +I E K ++ +L PR+A Y F + +D+G
Sbjct: 19 IAAIATAPGRGGVGIIRISGAKALAIGE---KISQHRLTPRYAHYGDFIDPDTQETLDQG 75
Query: 67 LVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNN 126
+ ++F PHS+TGEDV+ELHGHGGPI+L LL G + LA PGEF++RAFLN+
Sbjct: 76 ISLFFPNPHSFTGEDVVELHGHGGPIVLDQLLRVITRSGAT----LAKPGEFSERAFLND 131
Query: 127 KLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEE 186
K+DL Q EAI DLI+A++E A ++A+ SL G FS+ I+ L+++L LR +E + DFPEE
Sbjct: 132 KMDLTQAEAIADLIDANSEQAMRNALNSLQGAFSEQIHTLVEQLTQLRIYVEAAIDFPEE 191
Query: 187 NQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVG 246
+ + +++ ++L I ++L K+ Q K+ L+R G+ VV+ G+PN GKSSL N+L G
Sbjct: 192 EIDFLQDQH-IHSQLHDIHRQLNKVFTQAKQGVLVREGMKVVIAGKPNAGKSSLLNALAG 250
Query: 247 SDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWV 306
+ AIVT+IAGTTRD + + I ++ I DTAG+ N + VE+IGIER WV
Sbjct: 251 REAAIVTNIAGTTRDVLREHIHLDGMPLHIIDTAGLRSSN-------DVVEQIGIERAWV 303
Query: 307 ELKNSD-IIIYVQDARY-----DKHTDFDKKIIKNFPMNIP---VIYVWNKIDYSGHQKN 357
E++ +D I++ + Y D +T+ + I N NI + + NKID SG N
Sbjct: 304 EIEQADRILLLIDSTNYNADTPDINTEIRQFIDDNKHKNIDISRISVICNKIDQSGITPN 363
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
+ +NI IYLSA GI LL + L ++ T E + AR RH+ +L A+ L
Sbjct: 364 TSMIDNIPVIYLSAKANTGIELLVSHLKSVMGYKNTAEGG-FTARRRHLDALTRADESLV 422
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
A++ + EL+AEDLR + L I G+ + +DLL IFS FCIGK
Sbjct: 423 HAMQQLQLGAG------ELLAEDLRLSQQHLGEITGEVSADDLLGKIFSSFCIGK 471
>gi|257485604|ref|ZP_05639645.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tabaci str.
ATCC 11528]
gi|422682553|ref|ZP_16740818.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tabaci str.
ATCC 11528]
gi|331011892|gb|EGH91948.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tabaci str.
ATCC 11528]
Length = 456
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 193/470 (41%), Positives = 275/470 (58%), Gaps = 26/470 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT GRGGVGI+R+SG E + +T K PRFA Y F + +D+G+
Sbjct: 8 IAAIATAQGRGGVGIVRVSGPLASKAAEAIIGRTPK---PRFAHYGPFVDEAGQTLDEGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P+S+TGEDV+EL GHGGPI+L MLL CL++G RLA PGEF++RAFLN+K
Sbjct: 65 ALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS----RLARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+ AA++A+ SL G FS+ ++ L +KLI+LR +E + DFPEE
Sbjct: 121 LDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + + N L ++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDFLADGH-VLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ + DTAG+ D ++VE IG++R
Sbjct: 240 EAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQ-------DQVEMIGVQRALKA 292
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYK-NN 363
+ +D I+ V DA + D + ++ P V + NK D SG ++ +
Sbjct: 293 IGEADRILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKADLSGDHIDLQTSVDG 352
Query: 364 IANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKI 422
I LSA S G+ LLR L + QT ESS + AR RH+ +L A+ L
Sbjct: 353 HVTISLSARSGGAGLELLREHLKACMGYEQTSESS-FSARRRHLEALRHASDSLEH---- 407
Query: 423 INQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 408 -GRAQLTLAGAGELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|152998479|ref|YP_001343314.1| tRNA modification GTPase TrmE [Marinomonas sp. MWYL1]
gi|205415779|sp|A6W3V0.1|MNME_MARMS RecName: Full=tRNA modification GTPase MnmE
gi|150839403|gb|ABR73379.1| tRNA modification GTPase TrmE [Marinomonas sp. MWYL1]
Length = 459
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 192/473 (40%), Positives = 280/473 (59%), Gaps = 24/473 (5%)
Query: 3 TKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNI 62
T I AT PGRGGVGIIRLSG +I + + + KPR+A Y F
Sbjct: 8 TDQDTIAAQATAPGRGGVGIIRLSGPKSLAIAKQIIGF---EPKPRYAHYVPFKTTGQEQ 64
Query: 63 IDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRA 122
+D+G+ +YF P+S+TGEDV EL GHGGP+I+ MLLS C+ ++G RLA PGEF++RA
Sbjct: 65 LDEGIALYFPGPNSFTGEDVFELQGHGGPVIMDMLLSHCV----ALGARLARPGEFSERA 120
Query: 123 FLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFD 182
F+N+K+DL Q EAI DLI++++E AAK A+ SL G FSK ++ L++ LI+LR +E + D
Sbjct: 121 FMNDKMDLTQAEAIADLIDSTSEQAAKCALRSLQGAFSKRVDELVEALIHLRIYVEAAID 180
Query: 183 FPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFN 242
FPEE + I EL I+ KL +++++ + ALIR G+NVV+ G+PN GKSSL N
Sbjct: 181 FPEEEIDFI-GDGKVAAELAGIQAKLAEVLKEANQGALIREGMNVVIAGRPNAGKSSLLN 239
Query: 243 SLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302
+L G + AIVT+I GTTRD + + I ++ I DTAG+ D + +EVE+IGI+
Sbjct: 240 ALSGKESAIVTNIEGTTRDVLREHIHLDGMPLHIIDTAGLRD-------SPDEVERIGIQ 292
Query: 303 RTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNIN 359
R W E+ +D I+ + D++ D ++ + ++ + V NK+D + I
Sbjct: 293 RAWDEISKADRILMMVDSQSIDSKDPNEIWPEFMEKLGDTKHLTLVRNKVDLTKEGTGIE 352
Query: 360 YKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCA 419
+ + + LSA G+ L L ++ T E ++AR RHI +LN+AN +L
Sbjct: 353 TVSGVPVVSLSAKTGEGVTDLTEHLKAVMGFDSTTEGG-FIARRRHIEALNKANRFLDAG 411
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
N+ + EL+AEDL+ + LS I G T++DLL IF FCIGK
Sbjct: 412 ----NEQLHGYGAG-ELLAEDLKEAQQALSEITGAFTSDDLLGRIFGSFCIGK 459
>gi|397688934|ref|YP_006526253.1| tRNA modification GTPase TrmE [Pseudomonas stutzeri DSM 10701]
gi|395810490|gb|AFN79895.1| tRNA modification GTPase TrmE [Pseudomonas stutzeri DSM 10701]
Length = 455
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 183/476 (38%), Positives = 278/476 (58%), Gaps = 25/476 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M I IAT PGRGGVGI+R+SG ++ + + ++ R A Y F +
Sbjct: 1 MSQDRETIAAIATAPGRGGVGIVRVSGPRAKALAITL---SGREPLARHAHYGPFHADDG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
++D+GL+++F P+S+TGEDV+EL GHGGP++L MLL C+E+G RLA PGEF++
Sbjct: 58 EVLDEGLLLFFPGPNSFTGEDVLELQGHGGPVVLDMLLKRCVELGA----RLARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G+FS+ ++ L + LI LR +E +
Sbjct: 114 RAFLNDKLDLAQAEAIADLIEASSAQAARNAVRSLQGEFSRRVHQLTETLIQLRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + + + + L ++ +L +++++ + AL+R G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDFLADGH-VLQMLEGVRAELSEVLREAGQGALLREGMTVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D ++VE+IG
Sbjct: 233 LNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTK-------DQVERIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
+ER ++++D ++ V DA + D +++ P + NK D +G +
Sbjct: 286 VERAIQAIQDADRVLLVMDANAPESADPLAAWPELLAVRPDPAKTTLIRNKADLTGEPAS 345
Query: 358 INY-KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYL 416
++ + + LSA G+ LR L D + QT ESS + AR RH+ +L +A +L
Sbjct: 346 LSTGADGQVTLALSAKSGTGLETLRQHLKDCMGYEQTTESS-FSARRRHLDALRQAEAHL 404
Query: 417 SCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 405 DH-----GHAQLTLAGAGELLAEDLRLAQQALGEITGAFSSDDLLGRIFSSFCIGK 455
>gi|422672583|ref|ZP_16731946.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. aceris str.
M302273]
gi|330970320|gb|EGH70386.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. aceris str.
M302273]
Length = 456
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 194/470 (41%), Positives = 276/470 (58%), Gaps = 26/470 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT GRGGVGI+R+SG E + +T LKPRFA Y F ++D+G+
Sbjct: 8 IAAIATAQGRGGVGIVRVSGPLAGKAAEAIIGRT---LKPRFAHYGPFVDGTGQVLDEGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P+S+TGE+V+EL GHGGPI+L MLL CL++G RLA PGEF++RAFLN+K
Sbjct: 65 ALYFPGPNSFTGENVLELQGHGGPIVLDMLLQRCLQLGS----RLARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+ AA++A+ SL G FS+ ++ L +KLI+LR +E + DFPEE
Sbjct: 121 LDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + + N L ++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDFLADGH-VLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ + DTAG+ D ++VE IG++R
Sbjct: 240 EAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQ-------DQVEMIGVQRALKA 292
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYK-NN 363
+ +D I+ V DA + D + ++ P V + NK D SG N+ +
Sbjct: 293 IGEADRILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKADLSGDPINLQTSVDG 352
Query: 364 IANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKI 422
I LSA S G+ LLR L + QT ESS + AR RH+ +L A+ L
Sbjct: 353 HVTISLSARSGGEGLELLREHLKACMGYEQTSESS-FSARRRHLEALRHASDSLEH---- 407
Query: 423 INQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 408 -GRAQLTLAGAGELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|448239803|ref|YP_007403856.1| GTPase [Serratia marcescens WW4]
gi|445210167|gb|AGE15837.1| GTPase [Serratia marcescens WW4]
Length = 454
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 189/474 (39%), Positives = 280/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ I+ ATPPGRGGVGI+R+SG + + + K K PR+A Y F
Sbjct: 1 MSTTDTIVAQATPPGRGGVGILRISGSKAKDVAQALLGKLPK---PRYADYLPFRDAAGA 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + +R+A PGEF++R
Sbjct: 58 TLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRVLALPD---VRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SAM SL G FS I+ L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSAMNSLQGAFSTRIHQLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVMADLDNVRGEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D T+ + + + P +P+ V NK D +G +
Sbjct: 287 ERAWNEIEQADRVLFMVDGTTTAATEPAEIWPEFMARLPGTLPITVVRNKADITGETLGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
NN + I LSA G+++LR+ L + T +E +LAR RH+ +L A +L
Sbjct: 347 TEVNNHSLIRLSARTGEGVDVLRDHLKQSMGFTSNMEGG-FLARRRHLQALELAAQHLVQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + + EL+AE+LR LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKEQLVSAYAG-----ELLAEELRQAQLALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|453064443|gb|EMF05408.1| tRNA modification GTPase TrmE [Serratia marcescens VGH107]
Length = 454
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 189/474 (39%), Positives = 280/474 (59%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ I+ ATPPGRGGVGI+R+SG + + + K K PR+A Y F
Sbjct: 1 MSTTDTIVAQATPPGRGGVGILRISGSKAKDVAQALLGKLPK---PRYADYLPFRDATGA 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L + +R+A PGEF++R
Sbjct: 58 TLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRVLALPD---VRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SAM SL G FS I+ L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSAMNSLQGAFSTRIHQLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVMADLDNVRGEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D T+ + + + P +P+ V NK D +G +
Sbjct: 287 ERAWNEIEQADRVLFMVDGTTTAATEPAEIWPEFMARLPGTLPITVVRNKADITGETLGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
NN + I LSA G+++LR+ L + T +E +LAR RH+ +L A +L
Sbjct: 347 TEVNNHSLIRLSARTGEGVDVLRDHLKQSMGFTSNMEGG-FLARRRHLQALELAAQHLVQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + + EL+AE+LR LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKEQLVSAYAG-----ELLAEELRQAQLALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|425896669|ref|ZP_18873260.1| tRNA modification GTPase TrmE [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|397881931|gb|EJK98419.1| tRNA modification GTPase TrmE [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
Length = 456
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 187/471 (39%), Positives = 280/471 (59%), Gaps = 28/471 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I +AT GRGGVGI+R+SG + + + + ++LKPR+A Y FF + ++D+G+
Sbjct: 8 IAAVATAQGRGGVGIVRISGPLASAAAKAI---SGRELKPRYAHYGPFFSDRDEVLDEGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P+S+TGEDV+EL GHGGPI+L MLL CL++G RLA PGEF++RAFLN+K
Sbjct: 65 ALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLG----CRLARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+ AA++A+ SL G FSK ++ L ++LI LR +E + DFPEE
Sbjct: 121 LDLAQAEAIADLIEASSAQAARNALRSLQGAFSKRVHNLTEQLIALRIYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + + L ++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDFLADGH-VLQMLDAVRDELSTVVREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ + DTAG+ D ++VEKIG+ER
Sbjct: 240 EAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTE-------DQVEKIGVERALKA 292
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
+ +D ++ V DA + D + ++ P V + NK D + + ++
Sbjct: 293 ISEADRVLLVVDATAPEALDPFALWPEFLEQRPDPAKVTLIRNKADLTSEAIALEVSDD- 351
Query: 365 ANIYLSASKRI---GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIK 421
++ +S S + G+ LLR L + QT ESS + AR RH+ +L+ A+ L
Sbjct: 352 GHVTISLSAKAGGEGLELLREHLKACMGYEQTSESS-FSARRRHLEALHHASDALEH--- 407
Query: 422 IINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+S+ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 408 --GRSQLTLAGAGELLAEDLRQAQQSLGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|407367469|ref|ZP_11114001.1| tRNA modification GTPase TrmE [Pseudomonas mandelii JR-1]
Length = 456
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 194/478 (40%), Positives = 281/478 (58%), Gaps = 28/478 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKK-TKKQLKPRFATYSSFFCKN 59
M I +AT GRGGVGI+R+SG + I + + ++LKPRFA Y F +N
Sbjct: 1 MSVPRETIAAVATAQGRGGVGIVRISGP----LASIAARAISGRELKPRFAHYGPFLNEN 56
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFT 119
++D+G+ +YF P+S+TGEDV+EL GHGGPI+L MLL CLE+G RLA PGEF+
Sbjct: 57 EEVLDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLKRCLELG----CRLARPGEFS 112
Query: 120 KRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEF 179
+RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G FS ++ L ++LI LR +E
Sbjct: 113 ERAFLNDKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSLRVHNLTEQLIGLRIYVEA 172
Query: 180 SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
+ DFPEE + + + + L K++ +L ++++ + AL+R+G+ VV+ G+PN GKSS
Sbjct: 173 AIDFPEEEIDFLADGH-VLAMLDKVRDELSTVLREAGQGALLRDGMTVVIAGRPNAGKSS 231
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + ++VEKI
Sbjct: 232 LLNALAGREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTD-------DQVEKI 284
Query: 300 GIERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356
G+ER + +D ++ V DA + D + ++ P V + NK D +G
Sbjct: 285 GVERALKAIGEADRVLLVVDATAPEALDPFALWPEFLEIRPDPAKVTLIRNKADLTGEAI 344
Query: 357 NINYKNN-IANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ ++ I LSA S +G+ LLR L + QT ESS + AR RH+ +L A+
Sbjct: 345 ALEVSDDGHVTISLSAKSGGMGLELLREHLKACMGYEQTSESS-FSARRRHLDALRHASA 403
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L +++ EL+AEDLR L I G +++DLL IFS FCIGK
Sbjct: 404 SLEH-----GRAQLTLAGAGELLAEDLRQAQHSLGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|205422224|sp|A3DAS7.2|MNME_SHEB5 RecName: Full=tRNA modification GTPase MnmE
Length = 453
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 280/474 (59%), Gaps = 35/474 (7%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG ++ V K R+A Y F + +ID+G+
Sbjct: 6 IVAQATAPGRGGVGIIRISGDKASNVAMAVLGHLPK---TRYADYCDFKSASGQVIDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++FK P+S+TGEDV+EL GHGG I+L ML+ +E+G G+R+A PGEF+++AF+N+K
Sbjct: 63 ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVG---GIRIAKPGEFSEQAFMNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A+ E AAKSA+ SL G+FSK ++ L+D++ NLR +E + DFP+E
Sbjct: 120 LDLTQAEAIADLIDATCEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPDEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ N L KI KL + K+ ++IR G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 VDF-LSDGKIANALYKIIDKLDLVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D + VE+IGIER W E
Sbjct: 239 ESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRD-------TTDTVEQIGIERAWNE 291
Query: 308 LKNSDIIIYVQD----ARYDKHT---DFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
+ ++D ++++ D A D H DF + P N+ V + NK D +G +
Sbjct: 292 INSADRVLFMVDGTTTAAVDPHAIWPDF----VDRLPSNLGVTVIRNKADLTGEDLMMTE 347
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
+ + +SA +G+ L+ L L+ +E ++AR RH+ +L A +L
Sbjct: 348 EQGYSVYRISAKTGLGVEELKQHLKSLMGYQSNLEGG-FIARRRHLEALELAAGHLQLG- 405
Query: 421 KIINQSEKNFEKNL--ELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ E L EL+AE+LR C LS I G+ T++DLL IFS FCIGK
Sbjct: 406 ------KEQLEVYLAGELLAEELRMCQLALSEITGRFTSDDLLGKIFSSFCIGK 453
>gi|183597177|ref|ZP_02958670.1| hypothetical protein PROSTU_00420 [Providencia stuartii ATCC 25827]
gi|386743474|ref|YP_006216653.1| tRNA modification GTPase TrmE [Providencia stuartii MRSN 2154]
gi|188023491|gb|EDU61531.1| tRNA modification GTPase TrmE [Providencia stuartii ATCC 25827]
gi|384480167|gb|AFH93962.1| tRNA modification GTPase TrmE [Providencia stuartii MRSN 2154]
Length = 454
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 190/474 (40%), Positives = 286/474 (60%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
+ N I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F ++
Sbjct: 1 MQTNDTIVAQATPPGRGGVGILRVSGPKAAVVAQTVLGKLPK---PRYADYLPFRDVDDT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ I+F P+S+TGEDV+EL GHGGP+IL +LL L I G+R+A PGEF++R
Sbjct: 58 VLDQGIAIFFPGPNSFTGEDVLELQGHGGPVILDLLLRRILTID---GVRIANPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SAM SL G FS I+ +++ L LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSAMNSLQGAFSAQIHQMVEALTTLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L ++ + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAKLDDVIADLERVRSEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ + DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHVIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D+ T+ + + + P +PV + NK D +G +
Sbjct: 287 ERAWKEIEQADRVLFMLDSTTTDATEPQEIWPEFMARLPETLPVTVIRNKADKTGEKIEF 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
I LSA + GI+LLR+ L + + E +LAR RH+ +L+ A +L+
Sbjct: 347 VEDVRYPLIRLSAREEKGIDLLRDHLKETMGFNSNTEGG-FLARRRHLQALDAAAMHLAQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ ++ EL+AE+LR ++LS I G+ T++DLL IFS FCIGK
Sbjct: 406 -----GHEQLVVARSGELLAEELRLAQQELSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|119773150|ref|YP_925890.1| tRNA modification GTPase TrmE [Shewanella amazonensis SB2B]
gi|166234819|sp|A1S1G4.1|MNME_SHEAM RecName: Full=tRNA modification GTPase MnmE
gi|119765650|gb|ABL98220.1| tRNA modification GTPase TrmE [Shewanella amazonensis SB2B]
Length = 453
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 186/472 (39%), Positives = 282/472 (59%), Gaps = 31/472 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SGK + + K PR+A + F + ++ID+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGKLASDVAHTLLGHLPK---PRYADFCDFKAADGSVIDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++FK P+S+TGEDV+EL GHGG +++ ML+ + L++ G+R+A PGEF+++AF+N+K
Sbjct: 63 ALFFKGPNSFTGEDVLELQGHGGQVVMDMLIRAVLKVK---GVRIARPGEFSEQAFMNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AAKSA+ SL G+FS ++ L+DK+ NLR +E + DFP+E
Sbjct: 120 LDLTQAEAIADLIDATSEQAAKSALHSLQGEFSTQVHTLVDKITNLRLYVEAAIDFPDEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ L I +L ++ K+ ++IR G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 VDF-LSDGKIAAALYAIIDQLDEVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D +EVE+IGIER W E
Sbjct: 239 ESAIVTDIAGTTRDVLREHIHLDGMPLHIIDTAGLRD-------TTDEVERIGIERAWSE 291
Query: 308 LKNSDIIIYVQD----ARYDKHT---DFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
+ ++D ++++ D A D H DF I P + V V NK D +G
Sbjct: 292 IASADRVLFMVDGTDTAAVDPHEIWPDF----IDRLPKAMGVTVVRNKADLTGEPLEATE 347
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
+ + +SA +G++ L+ L L+ +E ++AR RH+ +L +A+ +L
Sbjct: 348 EQGYSVYRISAKTGLGVDALKQHLKSLMGYQSNLEGG-FIARRRHLEALEQASEHLQ--- 403
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 404 --LGKVQLEVYLAGELLAEELRMAQQALSEITGEFTSDDLLGKIFSSFCIGK 453
>gi|408479893|ref|ZP_11186112.1| tRNA modification GTPase TrmE [Pseudomonas sp. R81]
Length = 456
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 191/478 (39%), Positives = 282/478 (58%), Gaps = 28/478 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKK-TKKQLKPRFATYSSFFCKN 59
M I +AT GRGGVGI+R+SG + + K + ++LKPR+A Y F +
Sbjct: 1 MSAPRETIAAVATAQGRGGVGIVRISGP----LASVAAKAISGRELKPRYAHYGQFLDAD 56
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFT 119
++++D+GL IYF P+S+TGEDV+EL GHGGP++L MLL CL++G RLA PGEF+
Sbjct: 57 DSVLDEGLAIYFPGPNSFTGEDVLELQGHGGPVVLDMLLQRCLQLG----CRLARPGEFS 112
Query: 120 KRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEF 179
+RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G FS ++ L ++LI+LR +E
Sbjct: 113 ERAFLNDKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSLRVHNLTEQLISLRIYVEA 172
Query: 180 SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
+ DFPEE + + + + L K++++L ++++ + AL+R+G+ VV+ G+PN GKSS
Sbjct: 173 AIDFPEEEIDFLADGH-VLAMLDKVREELSTVLREAGQGALLRDGMTVVIAGRPNAGKSS 231
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D ++VEKI
Sbjct: 232 LLNALAGREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTE-------DQVEKI 284
Query: 300 GIERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356
G+ER + +D ++ V DA + D + ++ P V + NK D +G
Sbjct: 285 GVERALKAIGEADRVLLVVDATAPEAVDPFALWPEFLEQRPDPAKVTLIRNKADLTGEAI 344
Query: 357 NINYK-NNIANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ + I LSA + G+ LLR L + QT ESS + AR RH+ +L A+
Sbjct: 345 AMETSADGHVTISLSAKAAGEGLELLREHLKACMGYEQTSESS-FSARRRHLEALRHASA 403
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L +++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 404 ALEH-----GRAQLTLAGAGELLAEDLRQAQQLLGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|422596717|ref|ZP_16670997.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. lachrymans
str. M301315]
gi|330987014|gb|EGH85117.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. lachrymans
str. M301315]
Length = 456
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 194/470 (41%), Positives = 275/470 (58%), Gaps = 26/470 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT GRGGVGI+R+SG E + +T K PRFA Y F K +D+G+
Sbjct: 8 IAAIATAQGRGGVGIVRVSGPLASKAAEAIIGRTPK---PRFAHYGPFVDKAGQTLDEGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P+S+TGEDV+EL GHGGPI+L MLL CL++G RLA PGEF++RAFLN+K
Sbjct: 65 ALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS----RLARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+ AA++A+ SL G FS+ ++ L +KLI+LR +E + DFPEE
Sbjct: 121 LDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + + N L ++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDFLADGH-VLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ + DTAG+ D ++VE IG++R
Sbjct: 240 EAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQ-------DQVEMIGVQRALKA 292
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYK-NN 363
+ +D I+ V DA + D + ++ P V + NK D SG ++ +
Sbjct: 293 IGEADRILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKADLSGDPVDLQTSVDG 352
Query: 364 IANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKI 422
I LSA S G+ LLR L + QT ESS + AR RH+ +L A+ L
Sbjct: 353 HVTISLSARSGGEGLELLREHLKACMGYEQTSESS-FSARRRHLEALRHASDSLEH---- 407
Query: 423 INQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 408 -GRAQLTLAGAGELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|90194082|gb|ABD92602.1| ThdF [Mannheimia haemolytica]
Length = 436
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 192/466 (41%), Positives = 285/466 (61%), Gaps = 43/466 (9%)
Query: 13 TPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFK 72
TP GRGGVGI+R+SG ++ + V KT L PR A Y F ++ ++D+G+ ++FK
Sbjct: 1 TPIGRGGVGILRVSGPLAETVAQAVLGKT---LPPRIANYLPFKDEDGTVLDQGIALFFK 57
Query: 73 APHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQ 132
AP+S+TGEDV+EL GHGG +IL +LL L++ GLR+A GEF+++AFLN+KLDL Q
Sbjct: 58 APNSFTGEDVLELQGHGGQVILDLLLKRILQVK---GLRIARAGEFSEQAFLNDKLDLAQ 114
Query: 133 VEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELIL 192
EAI DLI+A++E AA+SA+ SL G+FS IN L+D +I LRT +E + DFP+E + +
Sbjct: 115 AEAIADLIDATSEQAARSALKSLQGEFSNKINALVDSVIYLRTYVEAAIDFPDEEIDFLA 174
Query: 193 NKNDFFNELIKIKKKLLKIIQQ-------GKKRALIRNGLNVVLIGQPNVGKSSLFNSLV 245
+ KI+ KL +II Q K+ +++R G+ VV+ G+PN GKSSL N+L
Sbjct: 175 DG--------KIEAKLNEIIAQLDGVRREAKQGSILREGMKVVIAGRPNAGKSSLLNALA 226
Query: 246 GSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTW 305
G + AIVT+IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI+R W
Sbjct: 227 GREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGIQRAW 279
Query: 306 VELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKN 362
E+ +D ++ + D+ + F + + + P N+PV + NK+D SG Q+ + +
Sbjct: 280 EEIAQADHVLLMIDSTEQQADQFRQEWAEFLAKLPANMPVTVIRNKVDLSGEQEGLIQVD 339
Query: 363 NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP---YLARERHIHSLNEANYYLSCA 419
+ I LSA ++G++LLR L +K+ +SS +LAR RH+ +L A +L
Sbjct: 340 DFTMIRLSAQTKVGVDLLREHL----KKSMGYQSSTEGGFLARRRHLQALETAAEHLERG 395
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
+ Q EL+AE+LR LS I G+ T++DLL NIF
Sbjct: 396 HIQLTQFLAG-----ELLAEELRMVQNALSEITGQFTSDDLLGNIF 436
>gi|298160861|gb|EFI01877.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
Length = 456
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 193/470 (41%), Positives = 275/470 (58%), Gaps = 26/470 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT GRGGVGI+R+SG E + +T K PRFA Y F + +D+G+
Sbjct: 8 IAAIATAQGRGGVGIVRVSGPLASKAAEAIIGRTPK---PRFAHYGPFVDEAGQTLDEGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P+S+TGEDV+EL GHGGPI+L MLL CL++G RLA PGEF++RAFLN+K
Sbjct: 65 ALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS----RLARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+ AA++A+ SL G FS+ ++ L +KLI+LR +E + DFPEE
Sbjct: 121 LDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + + N L ++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDFLADGH-VLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ + DTAG+ D ++VE IG++R
Sbjct: 240 EAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQ-------DQVEMIGVQRALKA 292
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYK-NN 363
+ +D I+ V DA + D + ++ P V + NK D SG ++ +
Sbjct: 293 IGEADRILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKADLSGDPIDLQTSVDG 352
Query: 364 IANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKI 422
I LSA S G+ LLR L + QT ESS + AR RH+ +L A+ L
Sbjct: 353 HVTISLSARSGGAGLELLREHLKACMGYEQTSESS-FSARRRHLEALRHASDSLEH---- 407
Query: 423 INQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 408 -GRAQLTLAGAGELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|422020441|ref|ZP_16366980.1| tRNA modification GTPase TrmE [Providencia alcalifaciens Dmel2]
gi|414101577|gb|EKT63176.1| tRNA modification GTPase TrmE [Providencia alcalifaciens Dmel2]
Length = 454
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 194/472 (41%), Positives = 287/472 (60%), Gaps = 25/472 (5%)
Query: 5 NSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIID 64
N I+ AT PGRGGVGI+R+SG + E V K K PR+A Y F + +++D
Sbjct: 4 NDTIVAQATAPGRGGVGILRVSGPQAALVAETVLGKLPK---PRYADYLPFRDADGSVLD 60
Query: 65 KGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFL 124
+G+ IYF P+S+TGEDV+EL GHGGP+IL +LL L I +R+A PGEF++RAFL
Sbjct: 61 QGIAIYFPGPNSFTGEDVLELQGHGGPVILDLLLRRILTIAN---IRIANPGEFSERAFL 117
Query: 125 NNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFP 184
N+KLDL Q EAI DLI+AS+E AA+SAM SL G FS I+ L++ L +LR +E + DFP
Sbjct: 118 NDKLDLAQAEAIADLIDASSEQAARSAMNSLQGAFSSHIHQLVEALTHLRIYVEAAIDFP 177
Query: 185 EENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSL 244
+E + L+ +L ++ L ++ Q ++ +L+R G+ VV+ G+PN GKSSL N+L
Sbjct: 178 DEEIDF-LSDGKIEAKLNEVVADLDQVRSQARQGSLLREGMKVVIAGRPNAGKSSLLNAL 236
Query: 245 VGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304
G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER
Sbjct: 237 AGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERA 289
Query: 305 WVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYK 361
W E++ ++ ++++ D+ T+ + + + P +PV + NK D +G
Sbjct: 290 WKEIEQANRVLFMVDSTTTDATEPQEIWPEFMARLPETLPVTVIRNKADKTGESVEFVAD 349
Query: 362 NNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI- 420
I LSA + GI+LLR+ L + + E +LAR RH+ +LN A +L+
Sbjct: 350 ARYPLIRLSAREEKGIDLLRDHLKETMGFNSNTEGG-FLARRRHLQALNNAATHLAQGYD 408
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++N ++ EL+AE+LR ++LS I G+ T++DLL IFS FCIGK
Sbjct: 409 QLVNA------RSGELLAEELRLAQQELSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|254788525|ref|YP_003075954.1| tRNA modification GTPase TrmE [Teredinibacter turnerae T7901]
gi|237685930|gb|ACR13194.1| tRNA modification GTPase TrmE [Teredinibacter turnerae T7901]
Length = 449
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 199/471 (42%), Positives = 278/471 (59%), Gaps = 31/471 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT PGRGGVGI+R+SG I + PR A Y+ FF +N N++D+G+
Sbjct: 4 IAAIATAPGRGGVGIVRVSGPGCQQIAHRILGLLPP---PREAKYTPFFDRNKNLLDQGI 60
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF AP+S+TGEDV+E GHGGP+IL MLL+ L + G RLA PGEF++RAFLN+K
Sbjct: 61 ALYFSAPNSFTGEDVLEFQGHGGPVILDMLLAEIL----AAGARLARPGEFSERAFLNDK 116
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS++ AAK A+ SL G FS+ IN L+++LI+LR +E + DFPEE
Sbjct: 117 LDLAQAEAIADLIDASSQQAAKQAINSLQGAFSEQINHLVEELIHLRMYVESAIDFPEEE 176
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L + ++ I+ ++ L+R G+ VV+ G+PN GKSSL N+L
Sbjct: 177 IDF-LSDGKVAAQLDNVLERASDILHTAQQGVLMREGMKVVIAGRPNAGKSSLLNALAQR 235
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
D+AIVT I GTTRD + + I I+ I DTAG ++ ++VE+IGIER W E
Sbjct: 236 DIAIVTDIEGTTRDVLREQIHIDGMPLHIVDTAG-------LRAATDKVEQIGIERAWQE 288
Query: 308 LKNSD-IIIYVQDARYD--KHTDFDKKIIKNFPMNIPVIYVWNKIDYSGH---QKNINYK 361
+ +D I++ V R D+ +++ K+ P V ++NKID SG YK
Sbjct: 289 IDQADRILLMVDSTRLPDLSREDYWQQLSKHQPTLEKVTVIYNKIDDSGFTLPDTPAVYK 348
Query: 362 NNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIK 421
I LSA GI+ L L ++ QT E + AR RH+ ++ A YL+
Sbjct: 349 ----EIALSAKTGAGIDALIAHLKSVMGYQQTGEGG-FSARRRHLDAIQHALTYLNN--- 400
Query: 422 IINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ EL+AEDLR + LS I GK T++DLL IFS FCIGK
Sbjct: 401 --GRNQLQLHAAGELLAEDLRLAQDHLSEITGKFTSDDLLGKIFSSFCIGK 449
>gi|392557204|ref|ZP_10304341.1| tRNA modification GTPase TrmE [Pseudoalteromonas undina NCIMB 2128]
Length = 454
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 194/465 (41%), Positives = 277/465 (59%), Gaps = 25/465 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
AT PGRGGVGIIR+SG + E + K K R+A Y F +D+G+ IYF
Sbjct: 11 ATAPGRGGVGIIRVSGNLAKQVAEKIIGKVPK---VRYADYVPFNTLAGQQLDQGIAIYF 67
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
PHS+TGEDV+EL GHGGP++L MLL EI K G+RLA PGEF++RAF+N+KLDL
Sbjct: 68 AGPHSFTGEDVLELQGHGGPVVLDMLLK---EISKIDGVRLAKPGEFSERAFMNDKLDLT 124
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLINA++E AAKSA+ SL G+FSK I L++K+I+LR +E + DFP+E +
Sbjct: 125 QAEAIADLINATSEQAAKSALQSLQGQFSKHIETLVEKVIHLRMYVEAAIDFPDEEIDF- 183
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L I ++L + Q K+ +++R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 184 LSDGKVGGDLNAIIEQLNAVTNQAKQGSIMREGMRVVIAGRPNAGKSSLLNALAGREAAI 243
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG ++++ ++VE+IGIER W E+ +
Sbjct: 244 VTEIAGTTRDVLREHIHIDGMPLHIIDTAG-------LRESPDKVEQIGIERAWDEINQA 296
Query: 312 DIIIYV----QDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANI 367
D ++++ D H + + + K P + V + NK D SG ++ + I
Sbjct: 297 DRVLFMLDGTDTTDTDPHAIWPEFMAK-LPQGMGVTVIRNKADLSGDTVGMDQEQQYPVI 355
Query: 368 YLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSE 427
LSA GI L+R L I E ++AR RH+ +L A Y+L +++
Sbjct: 356 SLSAKNADGIELVREHLKACIGFDGATEGG-FMARRRHLDALEHAAYHLDT-----GKTQ 409
Query: 428 KNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
E++AE+LR + L+ I G+ T++DLL IFS FCIGK
Sbjct: 410 LEMHVAGEILAEELRLTQQYLNEITGEFTSDDLLGKIFSSFCIGK 454
>gi|308188770|ref|YP_003932901.1| tRNA modification GTPase [Pantoea vagans C9-1]
gi|308059280|gb|ADO11452.1| tRNA modification GTPase [Pantoea vagans C9-1]
Length = 454
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 188/478 (39%), Positives = 281/478 (58%), Gaps = 31/478 (6%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ + I+ ATPPGRGGVGI+R+SG E+ + K KPR+A Y F + +
Sbjct: 1 MSHSDTIVAQATPPGRGGVGILRVSGAQ---AAEVARQLLGKLPKPRYADYLPFTDSDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL + + G+R+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIVAL---PGVRIAQPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E A +SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAVRSAVNSLQGAFSTRVNHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGRIEAQLNTVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G D AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGRDAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHT-------DFDKKIIKNFPMNIPVIYVWNKIDYSGH 354
ER W E++ +D ++++ D T DF + P +P+ V NK D +G
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDATEAAAIWPDF----VSRLPPELPITVVRNKADVTGE 342
Query: 355 QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ N + I LSA G++ LR+ L + +E +LAR RH+ +L A
Sbjct: 343 ALGLTEVNGHSLIRLSARTSEGVDALRDHLKQSMGFAGNMEGG-FLARRRHLQALELAAT 401
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L + ++ EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 402 HLQQGKAQLLGAQAG-----ELLAEELRVAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|302185835|ref|ZP_07262508.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. syringae
642]
Length = 456
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 193/470 (41%), Positives = 277/470 (58%), Gaps = 26/470 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT GRGGVGI+R+SG E + +T LKPRFA Y F ++D+G+
Sbjct: 8 IAAIATAQGRGGVGIVRVSGPLASKAAEAIIGRT---LKPRFAHYGPFVDDAGQVLDEGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P+S+TGEDV+EL GHGGPI+L MLL CL++G RLA PGEF++RAFLN+K
Sbjct: 65 ALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS----RLARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+ AA++A+ SL G FS+ ++ L +KLI+LR +E + DFPEE
Sbjct: 121 LDLAQAEAISDLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + + + L ++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDFLADGH-VLSMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ + DTAG+ D ++VE IG++R
Sbjct: 240 EAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQ-------DQVEMIGVQRALKA 292
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYK-NN 363
+ +D I+ V DA + D + ++ P V + NK D SG + ++ +
Sbjct: 293 IGEADRILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKADLSGDRVDLQTSVDG 352
Query: 364 IANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKI 422
I LSA S G+ LLR L + QT ESS + AR RH+ +L A+ L
Sbjct: 353 HVTISLSARSGGEGLELLREHLKACMGYEQTSESS-FSARRRHLEALRHASDSLEH---- 407
Query: 423 INQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 408 -GRAQLTLAGAGELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|389680623|ref|ZP_10171973.1| tRNA modification GTPase TrmE [Pseudomonas chlororaphis O6]
gi|388555728|gb|EIM18971.1| tRNA modification GTPase TrmE [Pseudomonas chlororaphis O6]
Length = 456
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 188/472 (39%), Positives = 280/472 (59%), Gaps = 30/472 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKK-TKKQLKPRFATYSSFFCKNNNIIDKG 66
I +AT GRGGVGI+R+SG + + K + ++LKPR+A Y FF + ++D+G
Sbjct: 8 IAAVATAQGRGGVGIVRISGP----LASVAAKAISGRELKPRYAHYGPFFSDRDEVLDEG 63
Query: 67 LVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNN 126
+ +YF P+S+TGEDV+EL GHGGPI+L MLL CL++G RLA PGEF++RAFLN+
Sbjct: 64 IALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLG----CRLARPGEFSERAFLND 119
Query: 127 KLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEE 186
KLDL Q EAI DLI AS+ AA++A+ SL G FSK ++ L ++LI LR +E + DFPEE
Sbjct: 120 KLDLAQAEAIADLIEASSAQAARNALRSLQGAFSKRVHNLTEQLIALRIYVEAAIDFPEE 179
Query: 187 NQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVG 246
+ + + + L ++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 EIDFLADGH-VLQMLDTVRDELSTVVREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAG 238
Query: 247 SDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWV 306
+ AIVT IAGTTRD + + I I+ + DTAG+ D ++VEKIG+ER
Sbjct: 239 REAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTE-------DQVEKIGVERALK 291
Query: 307 ELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNN 363
+ +D ++ V DA + D + ++ P V + NK D + + ++
Sbjct: 292 AIGEADRVLLVVDATAPEALDPFALWPEFLEQRPDPAKVTLIRNKADLTSEAIALEVSDD 351
Query: 364 IANIYLSASKRI---GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
++ +S S + G+ LLR L + QT ESS + AR RH+ +L+ A+ L
Sbjct: 352 -GHVTISLSAKAGGEGLELLREHLKACMGYEQTSESS-FSARRRHLEALHHASKALEH-- 407
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+S+ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 408 ---GRSQLTLAGAGELLAEDLRQAQQSLGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|288942813|ref|YP_003445053.1| tRNA modification GTPase TrmE [Allochromatium vinosum DSM 180]
gi|288898185|gb|ADC64021.1| tRNA modification GTPase TrmE [Allochromatium vinosum DSM 180]
Length = 447
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 189/474 (39%), Positives = 273/474 (57%), Gaps = 29/474 (6%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M T I IATPPG GGVGI+R+SG SI E + + + PR A + +F +
Sbjct: 1 MTTTGETIAAIATPPGMGGVGIVRISGPRTRSIAEGILGRVPE---PRRAAFGTFREADG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID+GL +YF+AP S+TGEDV+EL GHGGPI++ +LL CLE+G RLA PGEF++
Sbjct: 58 TFIDEGLALYFQAPRSFTGEDVLELQGHGGPIVMDLLLRRCLELGA----RLARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN KLDL+Q EA+ DLI +ST A + A SL G FS+ IN L+++LI +R +E +
Sbjct: 114 RAFLNGKLDLVQAEAVADLIESSTALAVRLAGRSLQGVFSQRINTLVERLIQVRLHVEAT 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFP+E +L ++ +L I + + +++ + +IR GL VV+ G PNVGKSSL
Sbjct: 174 LDFPDEEIDLA-DEPTVAIDLAAILEAVDRLLADAHQGQIIREGLAVVIAGAPNVGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L GSD AIVT I GTTRD + IQ++ +I DTAG ++ + VE+ G
Sbjct: 233 LNALCGSDAAIVTDIPGTTRDLLKFDIQVDGLPIRIVDTAG-------LRHTHDPVEQEG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
+ R L +D++++V Y + + D+ I FP P+ + NKID G +
Sbjct: 286 VRRAQTALSEADLVLWV----YAANGEPDESIRSTFPAGCPITRIRNKIDLPGEAAGLVE 341
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
++ I LS + G++LL+ L + E + ++AR RH+ +L A
Sbjct: 342 RDGEVEIALSVASGEGLDLLKAHLKSRAGLSAHPEGA-FIARRRHLDALERARGA----- 395
Query: 421 KIINQSEKNFEKNL--ELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + N E+ L EL+AE+L L I G+ T++DLL IFS FCIGK
Sbjct: 396 --LRAAATNLERRLGAELVAEELHLAQRALGEITGEFTSDDLLGRIFSSFCIGK 447
>gi|414561717|ref|NP_715645.2| tRNA uridine 5-carboxymethylaminomethyl modification system GTPase
subunit MnmE [Shewanella oneidensis MR-1]
gi|205371772|sp|Q8CX52.2|MNME_SHEON RecName: Full=tRNA modification GTPase MnmE
gi|410519463|gb|AAN53090.2| tRNA uridine 5-carboxymethylaminomethyl modification system GTPase
subunit MnmE [Shewanella oneidensis MR-1]
Length = 453
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 191/471 (40%), Positives = 280/471 (59%), Gaps = 29/471 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG ++ V K PR+A Y F + +ID+G+
Sbjct: 6 IVAQATAPGRGGVGIIRISGDKATNVAMAVLGHLPK---PRYADYCYFKSASGQVIDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++FK P+S+TGEDV+EL GHGG I+L ML+ LE+ G+R+A PGEF+++AF+N+K
Sbjct: 63 ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVLEVE---GIRIAKPGEFSEQAFMNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AAKSA+ SL G+FSK ++ L+D++ +LR +E + DFP+E
Sbjct: 120 LDLTQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTHLRLYVEAAIDFPDEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ N L KI KL+ + K+ ++IR G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 VDF-LSDGKIANALYKIIDKLIAVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D + VE+IGIER W E
Sbjct: 239 ESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRD-------TTDTVEQIGIERAWNE 291
Query: 308 LKNSDIIIYVQDA----RYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNN 363
+ ++D ++++ D D H D I P N+ V + NK D +G + +
Sbjct: 292 INSADRVLFMVDGTTTTAVDPH-DIWPDFINRLPTNLGVTVIRNKADLTGENLEMTEEKG 350
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
+ +SA +G++ L+ L L+ +E ++AR RH+ +L A +L
Sbjct: 351 YSVYRISAKTGLGVDELKQHLKSLMGYQSNLEGG-FIARRRHLEALEIAASHLQLG---- 405
Query: 424 NQSEKNFEKNL--ELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ E L EL+AE+LR LS I G+ T++DLL IFS FCIGK
Sbjct: 406 ---KEQLEVYLAGELLAEELRMAQLALSEITGRFTSDDLLGKIFSSFCIGK 453
>gi|289677543|ref|ZP_06498433.1| tRNA modification GTPase TrmE, partial [Pseudomonas syringae pv.
syringae FF5]
Length = 446
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 193/467 (41%), Positives = 274/467 (58%), Gaps = 26/467 (5%)
Query: 11 IATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIY 70
IAT GRGGVGI+RLSG E + +T LKPRFA Y F ++D+G+ +Y
Sbjct: 1 IATAQGRGGVGIVRLSGPLAGKAAEAIIGRT---LKPRFAHYGPFVDDAGQVLDEGIALY 57
Query: 71 FKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDL 130
F P+S+TGEDV+EL GHGGPI+L MLL CL++G RLA PGEF++RAFLN+KLDL
Sbjct: 58 FPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS----RLARPGEFSERAFLNDKLDL 113
Query: 131 IQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQEL 190
Q EAI DLI AS+ AA++A+ SL G FS+ ++ L +KLI+LR +E + DFPEE +
Sbjct: 114 AQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPEEEIDF 173
Query: 191 ILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVA 250
+ + + L ++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL N+L G + A
Sbjct: 174 LADGH-VLKMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAGREAA 232
Query: 251 IVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKN 310
IVT IAGTTRD + + I I+ + DTAG+ D ++VE IG++R +
Sbjct: 233 IVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQ-------DQVEMIGVQRALKAIGE 285
Query: 311 SDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYK-NNIAN 366
+D I+ V DA + D + ++ P V + NK D SG ++ +
Sbjct: 286 ADRILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKADLSGDPVDLQTSVDGHVT 345
Query: 367 IYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQ 425
I LSA S G+ LLR L + QT ESS + AR RH+ +L A+ L +
Sbjct: 346 ISLSARSGGEGLELLREHLKACMGYEQTSESS-FSARRRHLEALRHASDSLEH-----GR 399
Query: 426 SEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 400 AQLTLAGAGELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 446
>gi|90194088|gb|ABD92605.1| ThdF [Actinobacillus porcitonsillarum]
Length = 436
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 186/462 (40%), Positives = 278/462 (60%), Gaps = 35/462 (7%)
Query: 13 TPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFK 72
TP GRGGVGI+R+SG + + V K +LKPR A Y F + ++D+G+ ++FK
Sbjct: 1 TPIGRGGVGILRVSGPLASEVAKAVVGK---ELKPRLANYLPFMDTDGTVLDQGIALFFK 57
Query: 73 APHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQ 132
AP+S+TGEDV+EL GHGG +IL +LL LE+ G+R+A GEF+++AFLN+KLDL Q
Sbjct: 58 APNSFTGEDVLELQGHGGQVILDLLLKRILEVK---GVRIARAGEFSEQAFLNDKLDLAQ 114
Query: 133 VEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELIL 192
EAI DLI+A++E AA+SA+ SL G+FS +N L+D +I LRT +E + DFP+E + +
Sbjct: 115 AEAIADLIDATSEQAARSALKSLQGEFSNKVNELVDSVIYLRTYVEAAIDFPDEEIDFLA 174
Query: 193 NK------NDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVG 246
+ ND +L ++K + K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 175 DGKIEAKLNDIITQLANVRK-------EAKQGSILREGMKVVIAGKPNAGKSSLLNALAG 227
Query: 247 SDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWV 306
+ AIVT+IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI+R W
Sbjct: 228 REAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGIQRAWD 280
Query: 307 ELKNSDIIIYVQDARYDKHTDFD---KKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNN 363
E+ +D ++ + D+ + F + + P NIPV + NK+D SG + + ++
Sbjct: 281 EIAQADHVLLMIDSSEQQADVFKTEWAEFLAKLPQNIPVTVIRNKVDLSGESEGLEQQDG 340
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA ++G++LLR L + + E +LAR RH+ +L A +L +
Sbjct: 341 FTLIRLSAQTKVGVDLLREHLKQSMGYQSSTEGG-FLARRRHLQALETAAEHLERGHVQL 399
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
Q EL+AE+LR LS I G+ T++DLL NIF
Sbjct: 400 TQFFAG-----ELLAEELRMVQNALSEITGQFTSDDLLGNIF 436
>gi|359438259|ref|ZP_09228295.1| tRNA modification GTPase MnmE [Pseudoalteromonas sp. BSi20311]
gi|358027098|dbj|GAA64544.1| tRNA modification GTPase MnmE [Pseudoalteromonas sp. BSi20311]
Length = 454
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 194/465 (41%), Positives = 277/465 (59%), Gaps = 25/465 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
AT PGRGGVGIIR+SG + E + K K R+A Y F +D+G+ IYF
Sbjct: 11 ATAPGRGGVGIIRVSGNLAKQVAEKIIGKVPK---VRYADYVPFNTLAGQQLDQGIAIYF 67
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
PHS+TGEDV+EL GHGGP++L MLL EI K G+RLA PGEF++RAF+N+KLDL
Sbjct: 68 AGPHSFTGEDVLELQGHGGPVVLDMLLK---EISKIDGVRLAKPGEFSERAFMNDKLDLT 124
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLINA++E AAKSA+ SL G+FSK I L++K+I+LR +E + DFP+E +
Sbjct: 125 QAEAIADLINATSEQAAKSALQSLQGQFSKHIETLVEKVIHLRMYVEAAIDFPDEEIDF- 183
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L I ++L + Q K+ +++R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 184 LSDGKVGGDLNTIIEQLNAVTNQAKQGSIMREGMRVVIAGRPNAGKSSLLNALAGREAAI 243
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG ++++ ++VE+IGIER W E+ +
Sbjct: 244 VTEIAGTTRDVLREHIHIDGMPLHIIDTAG-------LRESPDKVEQIGIERAWDEINQA 296
Query: 312 DIIIYV----QDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANI 367
D ++++ D H + + + K P + V + NK D SG ++ + I
Sbjct: 297 DRVLFMLDGTDTTDTDPHAIWPEFMAK-LPQGMGVTVIRNKADLSGDTVGMDQEQQYPVI 355
Query: 368 YLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSE 427
LSA GI L+R L I E ++AR RH+ +L A Y+L +++
Sbjct: 356 SLSAKNADGIELVREHLKACIGFDGATEGG-FMARRRHLDALEHAAYHLDT-----GKTQ 409
Query: 428 KNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
E++AE+LR + L+ I G+ T++DLL IFS FCIGK
Sbjct: 410 LEMHVAGEILAEELRLTQQYLNEITGEFTSDDLLGKIFSSFCIGK 454
>gi|126176560|ref|YP_001052709.1| tRNA modification GTPase TrmE [Shewanella baltica OS155]
gi|386343308|ref|YP_006039674.1| tRNA modification GTPase mnmE [Shewanella baltica OS117]
gi|125999765|gb|ABN63840.1| tRNA modification GTPase trmE [Shewanella baltica OS155]
gi|334865709|gb|AEH16180.1| tRNA modification GTPase mnmE [Shewanella baltica OS117]
Length = 479
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 280/474 (59%), Gaps = 35/474 (7%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG ++ V K R+A Y F + +ID+G+
Sbjct: 32 IVAQATAPGRGGVGIIRISGDKASNVAMAVLGHLPK---TRYADYCDFKSASGQVIDQGI 88
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++FK P+S+TGEDV+EL GHGG I+L ML+ +E+G G+R+A PGEF+++AF+N+K
Sbjct: 89 ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVG---GIRIAKPGEFSEQAFMNDK 145
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A+ E AAKSA+ SL G+FSK ++ L+D++ NLR +E + DFP+E
Sbjct: 146 LDLTQAEAIADLIDATCEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPDEE 205
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ N L KI KL + K+ ++IR G+ VV+ G+PN GKSSL N+L G
Sbjct: 206 VDF-LSDGKIANALYKIIDKLDLVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGK 264
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D + VE+IGIER W E
Sbjct: 265 ESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRD-------TTDTVEQIGIERAWNE 317
Query: 308 LKNSDIIIYVQD----ARYDKHT---DFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
+ ++D ++++ D A D H DF + P N+ V + NK D +G +
Sbjct: 318 INSADRVLFMVDGTTTAAVDPHAIWPDF----VDRLPSNLGVTVIRNKADLTGEDLMMTE 373
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
+ + +SA +G+ L+ L L+ +E ++AR RH+ +L A +L
Sbjct: 374 EQGYSVYRISAKTGLGVEELKQHLKSLMGYQSNLEGG-FIARRRHLEALELAAGHLQLG- 431
Query: 421 KIINQSEKNFEKNL--ELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ E L EL+AE+LR C LS I G+ T++DLL IFS FCIGK
Sbjct: 432 ------KEQLEVYLAGELLAEELRMCQLALSEITGRFTSDDLLGKIFSSFCIGK 479
>gi|238899053|ref|YP_002924735.1| GTPase involved in tRNA modification and in thiophene and furan
oxidation [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|259495842|sp|C4K7P4.1|MNME_HAMD5 RecName: Full=tRNA modification GTPase MnmE
gi|229466813|gb|ACQ68587.1| GTPase involved in tRNA modification and in thiophene and furan
oxidation [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
Length = 458
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 200/480 (41%), Positives = 284/480 (59%), Gaps = 31/480 (6%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ I+ ATP GRGG+GI+R+SG ++ + + K + R+A Y +F N
Sbjct: 1 MSHTDTIVAQATPIGRGGIGILRISGCATKTVAKEILGKLPR---ARYAEYLAFKDPEGN 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
I+D+G+ +YF APHS+TGEDV+EL GHGGPIIL +LL + L + + +R+A PGEF++R
Sbjct: 58 ILDQGIALYFPAPHSFTGEDVLELQGHGGPIILDLLLKAILNL-PDVCVRIARPGEFSER 116
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL+Q EA+ DLI+ASTE AA+ A+ SL G FS IN L++ L LR IE S
Sbjct: 117 AFLNDKLDLVQAEAVADLIDASTEQAARCALHSLKGTFSLRINQLIESLTYLRVYIEASM 176
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DF +E + L+ +L ++ L K+ + ++ L+R G+ +V+ G+PNVGKSSL
Sbjct: 177 DFSDEEIDF-LSDGKIETQLDRVIHDLDKVRSEARQGQLLREGMKIVIAGRPNVGKSSLL 235
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT I GTTRD + + IQIN I DTAG +++ + VEKIGI
Sbjct: 236 NALTGRETAIVTQIPGTTRDVLREQIQINGMPLHIIDTAG-------LRETEDPVEKIGI 288
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFP--------MNIPVIYVWNKIDYSG 353
ER W E++ +D I+++ D T +K I +P +P+ + NK D +G
Sbjct: 289 ERAWNEIEQADRILFI----VDGSTSSEKTIYPLWPEWEARLSRSRLPITLIRNKSDITG 344
Query: 354 HQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSL-NEA 412
+ I LSA GI+LLR L + + +E +LAR RH+ +L N A
Sbjct: 345 EDVALTETEEGTFISLSARTGEGIDLLREHLQQTMGFSGNMEGG-FLARRRHLEALENAA 403
Query: 413 NYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Y LS K S NF EL+AE+LR + LS I G+ ++NDLL IFS FCIGK
Sbjct: 404 QYLLSARQK---WSSGNFLS--ELLAEELRLAQQVLSEITGQVSSNDLLGIIFSSFCIGK 458
>gi|157964067|ref|YP_001504101.1| tRNA modification GTPase TrmE [Shewanella pealeana ATCC 700345]
gi|189036209|sp|A8HAH9.1|MNME_SHEPA RecName: Full=tRNA modification GTPase MnmE
gi|157849067|gb|ABV89566.1| tRNA modification GTPase TrmE [Shewanella pealeana ATCC 700345]
Length = 453
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 194/472 (41%), Positives = 282/472 (59%), Gaps = 31/472 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG ++ V K R+A Y F + +ID+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGDLATNVAIAVLGHIPK---TRYADYCDFKDEAGEVIDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++FK P+S+TGEDV+EL GHGG I+L ML+ +E+ GLR+A PGEF+++AF+N+K
Sbjct: 63 ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVD---GLRIAKPGEFSEQAFMNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AAKSA+ SL G+FS I+ L++K+ NLR +E + DFP+E
Sbjct: 120 LDLTQAEAIADLIDATSEQAAKSALNSLQGEFSTQIHDLVEKVTNLRLYVEAAIDFPDEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ L I KL + K+ ++IR G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 VDF-LSDGKIAASLNGIVGKLDGVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D ++ VEKIGIER W E
Sbjct: 239 ESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRD-------TVDTVEKIGIERAWDE 291
Query: 308 LKNSDIIIYVQD----ARYDKHT---DFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
+K +D ++++ D A D H DF I P N+ V V NK D +G ++
Sbjct: 292 IKTADRVLFMVDGTTTAAIDPHEIWPDF----IDRLPSNLGVTVVRNKADLTGEDLSVTQ 347
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
+ + +SA +G+ L+ L L+ +E ++AR RH+ +L+ A+ +L
Sbjct: 348 EAGHSVYRISAKTGLGVEDLKQHLKSLMGYQSNLEGG-FIARRRHLEALDLASSHL---- 402
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ + + + EL+AE+LR C LS I GK T++DLL IFS FCIGK
Sbjct: 403 -MLGKEQLEVYQAGELLAEELRMCQMALSEITGKFTSDDLLGKIFSSFCIGK 453
>gi|333985787|ref|YP_004514997.1| tRNA modification GTPase mnmE [Methylomonas methanica MC09]
gi|333809828|gb|AEG02498.1| tRNA modification GTPase mnmE [Methylomonas methanica MC09]
Length = 446
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 201/474 (42%), Positives = 283/474 (59%), Gaps = 30/474 (6%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M++ + I IATPPG GGVGIIR+SG I + +KT K PR+A +S F+ ++
Sbjct: 1 MVSTSDTIAAIATPPGNGGVGIIRISGPAALDICRHITRKTPK---PRYALFSRFYDADD 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+IID GL +YF P S+TGED +EL GHGG ++L MLL L S+G R A PGEF++
Sbjct: 58 SIIDSGLALYFPGPASFTGEDTLELQGHGGSVVLDMLLRRVL----SLGTRPANPGEFSQ 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLNNK+DL Q EAI DLI + TE A +SA S+ G FS+ IN L+D+LI LR IE +
Sbjct: 114 RAFLNNKIDLTQAEAIADLITSGTEQAVRSAQHSMQGVFSEQINELIDELIELRVYIEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DF +E + L+ N++ ++ KL KI ++ L+ +G++VVL G+PN GKSSL
Sbjct: 174 IDFVDEEIDF-LSDGMVANKIEQLHGKLQKIHATAQQGRLLHDGISVVLAGKPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + IQI+ I DTAG+ D + N VE+ G
Sbjct: 233 LNALAGHEAAIVTDIAGTTRDVLRERIQIDGMPLHIIDTAGLHDSD-------NVVEQEG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKN-FPMNIPVIYVWNKIDYSGHQKNIN 359
I R E++ +D ++ + D+ TD + I N +I V ++NKID SG I
Sbjct: 286 IRRAQREIEKADKVLLLMDS-----TDSENNAILNQLSADIDVTLIFNKIDLSGQAPRIV 340
Query: 360 YKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCA 419
+ IYLSA G++LL+ L + +T ++ ++AR RH+ +L+ A + A
Sbjct: 341 EHPHRDEIYLSAKTGAGLDLLKRYLKSSVGFGETTDNV-FIARRRHLQALSLAEKAVENA 399
Query: 420 I-KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ NQ+ EL+AEDLR LS I G+ T++DLL IF FCIGK
Sbjct: 400 GNQLRNQAP-------ELVAEDLRQAQTSLSEITGEFTSDDLLGEIFGSFCIGK 446
>gi|372277406|ref|ZP_09513442.1| tRNA modification GTPase TrmE [Pantoea sp. SL1_M5]
gi|390436482|ref|ZP_10225020.1| tRNA modification GTPase TrmE [Pantoea agglomerans IG1]
Length = 454
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 190/478 (39%), Positives = 280/478 (58%), Gaps = 31/478 (6%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ + I+ ATPPGRGGVGI+R+SG E+ + K KPR+A Y F +
Sbjct: 1 MSHSDTIVAQATPPGRGGVGILRVSGAQ---AAEVARQLLGKLPKPRYADYLPFTDSDGR 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL + + G+R+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIVAL---PGVRIAQPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS IN L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSAVNSLQGVFSTRINHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGRIEAQLNTVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G D AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGRDAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHT-------DFDKKIIKNFPMNIPVIYVWNKIDYSGH 354
ER W E++ +D ++++ D T DF + P +P+ V NK D +G
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDATEAAAIWPDF----VSRLPPELPITVVRNKADVTGE 342
Query: 355 QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ N + I LSA G++ LR+ L + +E +LAR RH+ +L A
Sbjct: 343 SLGLTEVNGHSLIRLSARTSAGVDELRDHLKQSMGFAGNMEGG-FLARRRHLQALELAAT 401
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L + + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 402 HLQQGKAQLLGAWAG-----ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|381403455|ref|ZP_09928139.1| tRNA modification GTPase TrmE [Pantoea sp. Sc1]
gi|380736654|gb|EIB97717.1| tRNA modification GTPase TrmE [Pantoea sp. Sc1]
Length = 454
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 185/474 (39%), Positives = 279/474 (58%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ + I+ ATPPGRGGVGI+R+SG E+ + K KPR+A Y F + +
Sbjct: 1 MSHSDTIVAQATPPGRGGVGILRVSGAQ---AAEVARQLLGKLPKPRYADYLPFTDSDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F PHS+TGEDV+EL GHGGP+IL +LL + + G+R+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPHSFTGEDVLELQGHGGPVILDLLLKRIVAL---PGVRIAQPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS I+ L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSARIHHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGRIEAQLNTVVSDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYV---QDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ + + P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDATTTDATEAAAIWPDFVSRLPPQLPITVVRNKADVTGESPGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N + I LSA G++ LR+ L + + +E +LAR RH+ +L A +L
Sbjct: 347 TDVNGHSLIRLSARTSEGVDALRDHLKQSMGFSGNMEGG-FLARRRHLQALELAATHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKAQLLGAWAG-----ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|336450440|ref|ZP_08620891.1| tRNA modification GTPase TrmE [Idiomarina sp. A28L]
gi|336282835|gb|EGN76056.1| tRNA modification GTPase TrmE [Idiomarina sp. A28L]
Length = 473
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 183/468 (39%), Positives = 277/468 (59%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ ATPPG+GGVGI+R+SG I I+ K R+A Y++F ++D+G+
Sbjct: 26 IVAQATPPGKGGVGIVRVSGPAAKDIALIILGHCPKA---RYADYTAFKNTAGELLDQGI 82
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F+ P+S+TGED++EL GHGGP+++ ML+ + L + RLA PGEF++RAF+N+K
Sbjct: 83 ALFFQGPNSFTGEDILELQGHGGPVVIDMLIKAILATNHA---RLARPGEFSERAFMNDK 139
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+ ++E AA+ A+ SL G+FS I+ L+D +I+LR +E + DFPEE
Sbjct: 140 LDLAQAEAIADLIDTTSEQAARMALQSLQGEFSHKIDQLVDAVIHLRMYVEAAIDFPEEE 199
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L +I L K+ Q K+ +L+R G+ VV+ G+PN GKSSL N L G
Sbjct: 200 VDF-LSDGKVAGDLNEIISSLAKVETQAKQGSLLREGMRVVIAGRPNAGKSSLLNELAGR 258
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + IQI+ I DTAG ++++ ++VE+IGIER W E
Sbjct: 259 ESAIVTDIAGTTRDVLREHIQIDGMPLHIIDTAG-------LRESPDKVEQIGIERAWAE 311
Query: 308 LKNSDIIIYVQDARYDKHTDFD---KKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D+ D + P N+P + NK+D + Q N I
Sbjct: 312 IEQADRVLFMVDSTETNAVHPDDIWPEFFARLPENLPFSVIRNKVDLTAEQPGFREINGI 371
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
+ L AS GI LR L + + +E ++AR RH+ ++ A +L +
Sbjct: 372 PVVSLCASTGEGIEFLREHLKSCMGFNENMEGG-FMARRRHLDAIARAKAHL-----LSG 425
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + + EL+AE+LR L+ I G T++DLL IFS FCIGK
Sbjct: 426 QEQLEVYQAGELLAEELRLVQHHLNEITGAFTSDDLLGKIFSSFCIGK 473
>gi|418021546|ref|ZP_12660612.1| tRNA modification GTPase TrmE [Candidatus Regiella insecticola
R5.15]
gi|347603094|gb|EGY27993.1| tRNA modification GTPase TrmE [Candidatus Regiella insecticola
R5.15]
Length = 456
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 193/469 (41%), Positives = 279/469 (59%), Gaps = 18/469 (3%)
Query: 4 KNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNII 63
+N I+ ATPPGRGGVGI+R+SG + + + K PR+A Y F+ +++I+
Sbjct: 6 ENDTIVAQATPPGRGGVGILRVSGALAGVVAQAILNKLPT---PRYAHYLKFYDADSSIL 62
Query: 64 DKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAF 123
D+G+ +YF+ PHS+TGED++EL GHGGPI+L +LL L + GLR+A PGEF +RAF
Sbjct: 63 DQGIALYFQEPHSFTGEDILELQGHGGPIVLDLLLKRILALPLP-GLRIARPGEFLERAF 121
Query: 124 LNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDF 183
LNNK+DL Q EA+ DLINA++E AA+SA+ S G FS I LI+LR +E + DF
Sbjct: 122 LNNKIDLTQAEAVADLINANSEQAARSAVNSFQGIFSDRIKAFSQSLIDLRAYVEAAMDF 181
Query: 184 PEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNS 243
EE L+ +L I +L K+ + +L+R G+ VV+ G+PN GKSSL N+
Sbjct: 182 SEEEINF-LSDGKIEGQLNNIINELKKVQTAAHQGSLLREGMKVVIAGRPNAGKSSLLNA 240
Query: 244 LVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIER 303
L G + AIVT++AGTTRD + + I I+ I DTAG+ + S+I +EKIGIER
Sbjct: 241 LAGKESAIVTAVAGTTRDVLREYIHIDGMPLHIIDTAGLRE-TSEI------IEKIGIER 293
Query: 304 TWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNN 363
W E++N+D ++++ D+ + T D ++I P +P+I V NKID + Q +
Sbjct: 294 AWHEIENADSLLFIVDSSTTEATLPDPELIARLPTTLPIIVVRNKIDMTDEQCGLTEVKG 353
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA GI L+ L + TQ E +LAR RH+ +L +A +L+
Sbjct: 354 YPVIRLSAKTGQGIENLQQYLKKSMGFTQHPEGH-FLARRRHLDALEKALKHLNNG---- 408
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR L I G+ +++DLL IFS FCIGK
Sbjct: 409 -HGQLVIMQAGELLAEELRLAQSALEEITGEFSSDDLLGEIFSNFCIGK 456
>gi|33151312|ref|NP_872665.1| tRNA modification GTPase TrmE [Haemophilus ducreyi 35000HP]
gi|46577376|sp|Q7U344.1|MNME_HAEDU RecName: Full=tRNA modification GTPase MnmE
gi|33147532|gb|AAP95054.1| tRNA modification GTPase TrmE [Haemophilus ducreyi 35000HP]
Length = 452
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 190/474 (40%), Positives = 284/474 (59%), Gaps = 35/474 (7%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ ATP GRGGVGI+R+SG + + + KT L PR A Y F + I+D+G+
Sbjct: 5 IVAQATPIGRGGVGILRVSGPLAQQVAQEILGKT---LTPRLAHYLPFKDNDGEILDQGI 61
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++FKAP+S+TGEDV+EL GHGG +IL +LL L I G+R+A GEF+++AFLN+K
Sbjct: 62 ALFFKAPNSFTGEDVLELQGHGGQVILDLLLKRILTIN---GIRIARTGEFSEQAFLNDK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AA+SA+ SL G+FS IN L+D++I LRT +E + DFP+E
Sbjct: 119 LDLAQAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDQVIYLRTYVEAAIDFPDEE 178
Query: 188 QELILNK------NDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
+ + + ND ++L ++ Q+ K+ +++R G+ V+ G+PN GKSSL
Sbjct: 179 IDFLADGKIERHLNDIIHQLAAVR-------QEAKQGSILREGMKAVIAGRPNAGKSSLL 231
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT+IAGTTRD + + I ++ I DTAG +++ +EVEKIGI
Sbjct: 232 NALAGREAAIVTNIAGTTRDVLHEHIHLDGMPLHIIDTAG-------LREASDEVEKIGI 284
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFD---KKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
+R W E+ +D ++ + D+ F + + P +P+ + NK+D SG + +
Sbjct: 285 QRAWNEIVAADHVLLMLDSTEQSAYAFKTEWAEFLAKLPPKMPITIIRNKVDLSGEVEGL 344
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ I LSA +IG+++LR L + + E +LAR RH+ +L A +L+
Sbjct: 345 TQLDGFTLIRLSAQTKIGVDVLREHLKTSMGYQSSTEGG-FLARRRHLQALETAAKHLTQ 403
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ Q EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 404 GHIQLTQFFAG-----ELLAEELRLVQNTLSEITGQFTSDDLLGNIFSSFCIGK 452
>gi|365836870|ref|ZP_09378254.1| tRNA modification GTPase TrmE [Hafnia alvei ATCC 51873]
gi|364563067|gb|EHM40887.1| tRNA modification GTPase TrmE [Hafnia alvei ATCC 51873]
Length = 456
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 191/479 (39%), Positives = 287/479 (59%), Gaps = 33/479 (6%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++++ I+ ATPPGRGGVGI+R+SG+ + + K K PR+A Y F + +
Sbjct: 3 MSQSDTIVAQATPPGRGGVGILRVSGRQAKEVAMALLGKLPK---PRYADYLPFKDADGS 59
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ +YF P+S+TGEDV+EL GHGGP+IL +LL L + +R+A PGEF++R
Sbjct: 60 VLDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILLMPN---VRIARPGEFSER 116
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 117 AFLNDKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSNRVNQLVEALTHLRIFVEAAI 176
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + +L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 177 DFPDEEIDF-LSDGKIEAQLNGVMGELQAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 235
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 236 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 288
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFD---KKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D + + + P +P+ V NK D +G +
Sbjct: 289 ERAWNEIEQADRVLFMVDGTTTDAIEPATIWPEFMARLPKTLPITVVRNKADVTGETLGL 348
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N N + I LSA GI++LR+ L + T +E +LAR RH+ +L A +L
Sbjct: 349 NEVNGYSLIRLSARTGEGIDVLRDHLKQSMGFTSNMEGG-FLARRRHLQALETAAQHL-- 405
Query: 419 AIKIINQSEKNFEKNL-----ELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
E+ E+ L EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 --------EQGKEQLLSAYAGELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 456
>gi|395495778|ref|ZP_10427357.1| tRNA modification GTPase TrmE [Pseudomonas sp. PAMC 25886]
Length = 456
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 190/477 (39%), Positives = 280/477 (58%), Gaps = 26/477 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M I +AT GRGGVGI+R+SG + V + +LKPR+A Y F +
Sbjct: 1 MSAPRETIAAVATAQGRGGVGIVRISGPLAGVAAQAVIGR---ELKPRYAHYGPFLGADE 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
++D+G+ +YF P+S+TGEDV+EL GHGGPI+L MLL CL++G RLA PGEF++
Sbjct: 58 EVLDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLG----CRLARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G FS ++ L ++LI+LR +E +
Sbjct: 114 RAFLNDKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSLRVHNLTEQLISLRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + + + + L +++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDFLADGH-VLAMLDRVRDELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + ++VEKIG
Sbjct: 233 LNALAGREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTD-------DQVEKIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
+ER + +D ++ V DA + D + ++ P V + NK D +G
Sbjct: 286 VERALKAITEADRVLLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKADLTGEAIA 345
Query: 358 INYKNN-IANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYY 415
+ ++ I LSA S G+ LLR+ L + QT ESS + AR RH+ +L A+
Sbjct: 346 LEVSDDGHVTISLSAKSAGEGLELLRDHLKACMGYEQTSESS-FSARRRHLEALRHASAA 404
Query: 416 LSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L +++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 405 LEH-----GRAQLTLAGAGELLAEDLRQAQQLLGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|114049515|ref|YP_740065.1| tRNA modification GTPase TrmE [Shewanella sp. MR-7]
gi|123030127|sp|Q0HPE7.1|MNME_SHESR RecName: Full=tRNA modification GTPase MnmE
gi|113890957|gb|ABI45008.1| tRNA modification GTPase trmE [Shewanella sp. MR-7]
Length = 453
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 191/469 (40%), Positives = 277/469 (59%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG + V K PR+A Y F + +ID+G+
Sbjct: 6 IVAQATAPGRGGVGIIRISGDKATDVAMAVLGHLPK---PRYADYCDFKNASGQVIDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK P+S+TGEDV+EL GHGG I+L ML+ LE+ G+R+A PGEF+++AF+N+K
Sbjct: 63 ALYFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVLEVE---GIRIAKPGEFSEQAFMNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AAKSA+ SL G+FSK ++ L+D++ +LR +E + DFP+E
Sbjct: 120 LDLTQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTHLRLYVEAAIDFPDEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ N L KI KL + K+ ++IR G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 VDF-LSDGKIANALYKIIDKLSVVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D + VE+IGIER W E
Sbjct: 239 ESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRD-------TTDTVEQIGIERAWNE 291
Query: 308 LKNSDIIIYVQDA----RYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNN 363
+ ++D ++++ D D H D I P N+ V V NK D +G + +
Sbjct: 292 INSADRVLFMVDGTTTDAVDPH-DIWPDFINRLPANLGVTVVRNKADLTGENLAMTEEKG 350
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
+ +SA +G+ L+ L L+ +E ++AR RH+ +L+ A +L +
Sbjct: 351 YSVYRISAKTGLGVEELKQHLKSLMGYQSNLEGG-FIARRRHLEALDIAASHLQ-----L 404
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR LS I G+ T++DLL IFS FCIGK
Sbjct: 405 GKEQLEIYLAGELLAEELRMAQLALSEITGRFTSDDLLGKIFSSFCIGK 453
>gi|304398073|ref|ZP_07379948.1| tRNA modification GTPase TrmE [Pantoea sp. aB]
gi|440757783|ref|ZP_20936964.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pantoea agglomerans
299R]
gi|304354359|gb|EFM18731.1| tRNA modification GTPase TrmE [Pantoea sp. aB]
gi|436428547|gb|ELP26203.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pantoea agglomerans
299R]
Length = 454
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 188/478 (39%), Positives = 281/478 (58%), Gaps = 31/478 (6%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ + I+ ATPPGRGGVGI+R+SG E+ + K KPR+A Y F + +
Sbjct: 1 MSHSDTIVAQATPPGRGGVGILRVSGAQ---AAEVARQLLGKLPKPRYADYLPFTDSDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL + + G+R+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIVAL---PGVRIAQPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS IN L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSTRINHLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGRIEAQLNTVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G D AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGRDAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKH-------TDFDKKIIKNFPMNIPVIYVWNKIDYSGH 354
ER W E++ +D ++++ D DF + P +P+ V NK D +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDATEAAAIWPDF----VSRLPPELPITVVRNKADVTSE 342
Query: 355 QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ N + I LSA G++ LR+ L + +E +LAR RH+ +L A
Sbjct: 343 PPGLTEINGHSLIRLSARTSEGVDELRDHLKQSMGFAGNMEGG-FLARRRHLQALELAAM 401
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L +++ + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 402 HLQQ-----GRAQLLGARAGELLAEELRVAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|395800065|ref|ZP_10479344.1| tRNA modification GTPase TrmE [Pseudomonas sp. Ag1]
gi|395335907|gb|EJF67769.1| tRNA modification GTPase TrmE [Pseudomonas sp. Ag1]
Length = 456
Score = 342 bits (876), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 189/477 (39%), Positives = 281/477 (58%), Gaps = 26/477 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M I +AT GRGGVGI+R+SG + + + ++LKPR+A Y F +
Sbjct: 1 MSAPRETIAAVATAQGRGGVGIVRISGPLAGVAAQAI---SGRELKPRYAHYGPFLGADE 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
++D+G+ +YF P+S+TGEDV+EL GHGGPI+L MLL CL++G RLA PGEF++
Sbjct: 58 EVLDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLG----CRLARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G FS ++ L ++LI+LR +E +
Sbjct: 114 RAFLNDKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSLRVHNLTEQLISLRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + + + + L K++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDFLADGH-VLAMLDKVRDELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + ++VEKIG
Sbjct: 233 LNALAGREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTD-------DQVEKIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
+ER + +D ++ V DA + D + ++ P V + NK D +G
Sbjct: 286 VERALKAITEADRVLLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKADLTGEAIA 345
Query: 358 INY-KNNIANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYY 415
+ ++ I LSA + G+ LLR+ L + QT ESS + AR RH+ +L A+
Sbjct: 346 LEVSEDGHVTISLSAKAAGEGLELLRDHLKACMGYEQTSESS-FSARRRHLEALRHASAA 404
Query: 416 LSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L +++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 405 LEH-----GRAQLTLAGAGELLAEDLRQAQQLLGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|312964013|ref|ZP_07778484.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens WH6]
gi|311282048|gb|EFQ60658.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens WH6]
Length = 456
Score = 342 bits (876), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 190/477 (39%), Positives = 281/477 (58%), Gaps = 26/477 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M I +AT GRGGVGI+R+SG + + + ++LKPR+A Y F +
Sbjct: 1 MSAPRETIAAVATAQGRGGVGIVRISGPLAGHAAKAI---SGRELKPRYAHYGPFLDADE 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+++D+GL +YF P+S+TGEDV+EL GHGGP++L MLL CL++G RLA PGEF++
Sbjct: 58 SVLDEGLTLYFPGPNSFTGEDVLELQGHGGPVVLDMLLQRCLQLG----CRLARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G FS ++ L ++LI+LR +E +
Sbjct: 114 RAFLNDKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSLRVHNLTEQLISLRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + + + + L K++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDFLADGH-VLTMLDKVRDELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + ++VEKIG
Sbjct: 233 LNALAGREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTD-------DQVEKIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
+ER + +D ++ V DA + D + ++ P V + NK D +G
Sbjct: 286 VERALKAIGEADRVLLVVDATAPEAVDPFALWPEFLEQRPDPAKVTLIRNKADLTGEAIA 345
Query: 358 I-NYKNNIANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYY 415
+ + I LSA S G+ LLR+ L + QT ESS + AR RH+ +L A+
Sbjct: 346 LATSADGHVTISLSAKSAGDGLELLRDHLKACMGYEQTSESS-FSARRRHLEALRHASAA 404
Query: 416 LSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L +++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 405 LEH-----GRAQLTLAGAGELLAEDLRQAQQLLGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|417534982|ref|ZP_12188598.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Salmonella enterica
subsp. enterica serovar Urbana str. R8-2977]
gi|353657635|gb|EHC98024.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Salmonella enterica
subsp. enterica serovar Urbana str. R8-2977]
Length = 466
Score = 342 bits (876), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 193/486 (39%), Positives = 282/486 (58%), Gaps = 35/486 (7%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ N I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F + +
Sbjct: 1 MSHNDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKLPK---PRYADYLPFKDVDGS 57
Query: 62 IIDKGLVIYFKAPHSYTG------------EDVIELHGHGGPIILHMLLSSCLEIGKSIG 109
+D+G+ ++F P+S+TG EDV+EL GHGGP+IL +LL L + G
Sbjct: 58 ALDQGIALWFPGPNSFTGLWFPGPNSFITGEDVLELQGHGGPVILDLLLKRILTL---PG 114
Query: 110 LRLAMPGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDK 169
+R+A PGEF++RAFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++
Sbjct: 115 VRIARPGEFSERAFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEA 174
Query: 170 LINLRTLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVL 229
L +LR +E + DFP+E + L+ +L + L + + ++ +L+R G+ VV+
Sbjct: 175 LTHLRIYVEAAIDFPDEEIDF-LSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVI 233
Query: 230 IGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKI 289
G+PN GKSSL N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D +
Sbjct: 234 AGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS--- 290
Query: 290 KKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVW 346
+EVE+IGIER W E++ +D ++++ D D I P N+P+ V
Sbjct: 291 ----DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVR 346
Query: 347 NKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHI 406
NK D +G I+ N + + LSA G+++LRN L + +E +LAR RH+
Sbjct: 347 NKADITGETLGISEVNGHSLVRLSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHL 405
Query: 407 HSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFS 466
+L EA +L + + EL+AE+LR + LS I G+ T++DLL IFS
Sbjct: 406 QALAEAADHLEQGKAQLLGAWAG-----ELLAEELRLAQQSLSEITGEFTSDDLLGRIFS 460
Query: 467 QFCIGK 472
FCIGK
Sbjct: 461 SFCIGK 466
>gi|190171332|gb|ACE63736.1| ThdF [Cronobacter sakazakii]
Length = 439
Score = 342 bits (876), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 186/457 (40%), Positives = 274/457 (59%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SG+ + + V K K R+A Y F N +D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRVSGQQARDVAQAVLGKLPKA---RYADYLPFKDANGTALDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIARPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWQEIEQA 288
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D TD + I P +P+ V NK D +G Q I+ N + I
Sbjct: 289 DRVLFMVDGTTTDATDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGISEVNGHSLIR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA G+++LRN L + ++E +LAR RH+ +L +A +L + +
Sbjct: 349 LSARTNEGVDVLRNHLKQSMGFDTSMEGG-FLARRRHLQALEDAANHLQQGKAQLLGAWA 407
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G-----ELLAEELRLAQQALSEITGEFTSDDLLGRIF 439
>gi|254515875|ref|ZP_05127935.1| tRNA modification GTPase TrmE [gamma proteobacterium NOR5-3]
gi|219675597|gb|EED31963.1| tRNA modification GTPase TrmE [gamma proteobacterium NOR5-3]
Length = 458
Score = 342 bits (876), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 192/476 (40%), Positives = 277/476 (58%), Gaps = 25/476 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
++ + I IAT PG GGVGIIRLSG +S+ + V T K R A Y ++
Sbjct: 4 LVGDSDTITAIATGPGAGGVGIIRLSGPKAFSVAQAVTGVTAK---ARQAHYVQIHDRHG 60
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+++D+GL++ F PHS+TGEDV ELH HGGP++L +L C+ +G R A PGEF++
Sbjct: 61 DVLDQGLLLQFPGPHSFTGEDVAELHCHGGPVLLRTVLRECIHLGA----RQAAPGEFSQ 116
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLNNK+DL+Q EAI DLI++STE+AA+SA SLSG FS ++ LL++LI LR IE +
Sbjct: 117 RAFLNNKIDLVQAEAIADLISSSTEAAARSASRSLSGAFSTQVDALLEQLIRLRVFIEAA 176
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + I ++D L I+ + ++ ++ +R+GL +V+ G PN GKSSL
Sbjct: 177 IDFPEEEIDFI-AESDVLERLESIEASIDSLLAGARRGRTLRDGLKLVIAGAPNAGKSSL 235
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N L D AIVT I GTTRD + + +QI+ I DTAG+ D + + +E+ G
Sbjct: 236 LNQLAEQDSAIVTDIPGTTRDVLREYVQIDGLPLHIVDTAGLRD-------SADAIEQEG 288
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQK 356
I R E++++D I+ V D+ +T +I + P +P+ + NK D S
Sbjct: 289 IRRARTEMQSADHILLVIDSSQINNTKDSTTLIAAYKGDLPPAVPITLIRNKCDLSETPA 348
Query: 357 NINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYL 416
I+ ++ I LSA GI LLR LL +SS + ARERH+ +L + ++L
Sbjct: 349 FIDRDKDVTEISLSARSGDGIALLRQHLLS-AAGMSDSDSSDFSARERHVLALEDCAHHL 407
Query: 417 SCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + Q ELIAEDLR+ + L SI G ++++LL IFS FCIGK
Sbjct: 408 RQGLFQLKQ-----HGAAELIAEDLRYAQDSLGSITGSFSSDELLGEIFSSFCIGK 458
>gi|421140871|ref|ZP_15600867.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens BBc6R8]
gi|404508073|gb|EKA22047.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens BBc6R8]
Length = 456
Score = 342 bits (876), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 191/477 (40%), Positives = 282/477 (59%), Gaps = 26/477 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M I +AT GRGGVGI+R+SG L S+ + ++LKPR+A Y F +
Sbjct: 1 MSAPRETIAAVATAQGRGGVGIVRISGP-LASVAAQAI--SGRELKPRYAHYGPFLGADE 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
++D+G+ +YF P+S+TGEDV+EL GHGGPI+L MLL CL++G RLA PGEF++
Sbjct: 58 EVLDEGIALYFSGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLG----CRLARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G FS ++ L ++LI+LR +E +
Sbjct: 114 RAFLNDKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSLRVHNLTEQLISLRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + + + + L K++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDFLADGH-VLAMLDKVRDELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + ++VEKIG
Sbjct: 233 LNALAGREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTD-------DQVEKIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
+ER + +D ++ V DA + D + ++ P V + NK D +G
Sbjct: 286 VERALKAITEADRVLLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKADLTGEAIA 345
Query: 358 INY-KNNIANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYY 415
+ ++ I LSA + G+ LLR+ L + QT ESS + AR RH+ +L A+
Sbjct: 346 LEVSEDGHVTISLSAKAAGEGLELLRDHLKACMGYEQTSESS-FSARRRHLEALRHASAA 404
Query: 416 LSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L +++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 405 LEH-----GRAQLTLAGAGELLAEDLRQAQQLLGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|390951261|ref|YP_006415020.1| tRNA modification GTPase TrmE [Thiocystis violascens DSM 198]
gi|390427830|gb|AFL74895.1| tRNA modification GTPase TrmE [Thiocystis violascens DSM 198]
Length = 445
Score = 342 bits (876), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 187/473 (39%), Positives = 274/473 (57%), Gaps = 30/473 (6%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
+T+++ I+ IATPPG GGVGI+R+SG + I E + + L PR A+ ++F +
Sbjct: 1 MTQDT-IVAIATPPGIGGVGIVRVSGSRVRKIAEAIVGRP---LHPRIASVATFRDAAGD 56
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
ID+GL ++F+AP S+TGEDV+EL GHGGP++L ++L CLE+G R+A PGEFT+R
Sbjct: 57 FIDEGLALFFQAPKSFTGEDVLELQGHGGPVVLDLMLHRCLELGA----RMARPGEFTER 112
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN KLDL + EA+ DLI +S+ AA+ A SL G FS+ I L++ L LR LIE +
Sbjct: 113 AFLNGKLDLARAEAVADLIESSSVLAARLAGQSLQGVFSRRIETLIEHLTRLRMLIEATL 172
Query: 182 DFPEENQELILNKN--DFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
DFP+E ++ ++ +LI + + ++ QG+ +IR GL VV+ G PNVGKSS
Sbjct: 173 DFPDEEIDVATEQSVASGLRQLIDMTRAIMTEAHQGQ---MIREGLAVVIAGAPNVGKSS 229
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N L G+D AIVT IAGTTRD + I ++ +I DTAG I++ + VE+
Sbjct: 230 LLNRLSGTDAAIVTPIAGTTRDLLKLDIHVDGLPIRIVDTAG-------IRQTDDPVERE 282
Query: 300 GIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNIN 359
G+ R +L +D+++++ D D + + P N PV V NKID +G + +
Sbjct: 283 GVRRAREQLVTADLVLWIHDGIEDAEPMGE----ASLPSNCPVTRVRNKIDLAGIEPQLA 338
Query: 360 YKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCA 419
I LSA G++LLR+ L + T+ ++AR RH+ +LN L A
Sbjct: 339 ETKTGTEISLSAETGAGLDLLRDH-LKAVAGVGTLPGGAFMARRRHLDALNRGLQCLDVA 397
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + EL+AE+L I G+ T++DLL IF+ FCIGK
Sbjct: 398 -----QENLTNQTGPELVAEELLQAQRVFGEITGQVTSDDLLGRIFASFCIGK 445
>gi|329297776|ref|ZP_08255112.1| tRNA modification GTPase TrmE [Plautia stali symbiont]
Length = 454
Score = 342 bits (876), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 184/474 (38%), Positives = 279/474 (58%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ + I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F + +
Sbjct: 1 MSHSDTIVAQATPPGRGGVGILRISGAKAAEVAQAVLGKLPK---PRYADYLPFNDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL + + +R+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIVALPS---VRIAQPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS + L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSLYVKALVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEVQLNAVIGDLNGVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D T+ + + P +P+ V NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDATEANAIWPDFVARLPAALPITVVRNKADMTGETLGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N + I LSA G++ LR L + +E +LAR RH+ +L A +L
Sbjct: 347 TEVNGHSLIRLSARTGAGVDTLREHLKQSMGFAGNMEGG-FLARRRHLQALELAATHLQQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 406 GKEQLLGAWAG-----ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|422665972|ref|ZP_16725842.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. aptata str.
DSM 50252]
gi|330976397|gb|EGH76454.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. aptata str.
DSM 50252]
Length = 456
Score = 342 bits (876), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 193/470 (41%), Positives = 275/470 (58%), Gaps = 26/470 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT GRGGVGI+R+SG E + +T LKPRFA Y F ++D+G+
Sbjct: 8 IAAIATAQGRGGVGIVRVSGPLAGKAAEAIIGRT---LKPRFAHYGPFVDDAGQVLDEGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P+S+TGEDV+EL GHGGPI+L MLL CL++G RLA PGEF++RAFLN+K
Sbjct: 65 ALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS----RLARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI A + AA++A+ SL G FS+ ++ L +KLI+LR +E + DFPEE
Sbjct: 121 LDLAQAEAIADLIEAISAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + + N L ++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDFLADGH-VLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ + DTAG+ D ++VE IG++R
Sbjct: 240 EAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQ-------DQVEMIGVQRALKA 292
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYK-NN 363
+ +D I+ V DA + D + ++ P V + NK D SG ++ +
Sbjct: 293 IGEADRILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKADLSGDPVDLQTSVDG 352
Query: 364 IANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKI 422
I LSA S G+ LLR L + QT ESS + AR RH+ +L A+ L
Sbjct: 353 HVTISLSARSGGEGLELLREHLKACMGYEQTSESS-FSARRRHLEALRHASDSLEH---- 407
Query: 423 INQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 408 -GRAQLTLAGAGELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|344339925|ref|ZP_08770852.1| tRNA modification GTPase mnmE [Thiocapsa marina 5811]
gi|343800104|gb|EGV18051.1| tRNA modification GTPase mnmE [Thiocapsa marina 5811]
Length = 445
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 184/467 (39%), Positives = 274/467 (58%), Gaps = 29/467 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I +ATPPG GGVGI+R+SG + SI E V K PR AT+++F + + ID+G+
Sbjct: 6 IAALATPPGVGGVGIVRISGARVSSIAEAVLGKVPC---PRQATFATFRDSHGHFIDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F AP S+TGEDV+EL GHGGP+++ +LL CL++G R+A PGEF++RAFLN K
Sbjct: 63 ALFFPAPASFTGEDVLELQGHGGPVVMDLLLQGCLDLGA----RVARPGEFSERAFLNGK 118
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EA+ DLI +ST A + A SL G FS+ ++ L+++L+ +RT IE + DFP++
Sbjct: 119 LDLAQAEAVADLIESSTALAVRLAGRSLQGVFSRRVDDLIERLVRMRTYIEATLDFPDDE 178
Query: 188 QELI--LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLV 245
+L L ++ +I ++++ +QG+ +IR GL VV+ G PN GKSSL N+L
Sbjct: 179 LDLAADLGISEDLRAMIDETREVMGFARQGQ---VIREGLAVVIAGPPNAGKSSLLNALS 235
Query: 246 GSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTW 305
G D AIVT I GTTRD + IQ++ +I DTAG ++ + + +E+ G+ R
Sbjct: 236 GQDAAIVTPIPGTTRDLLRLDIQVDGLPIRIVDTAG-------LRHSEDPIEREGVRRAR 288
Query: 306 VELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIA 365
E+ +D++++V +D D+ ++ P IPV V NKID G I
Sbjct: 289 GEIDRADLVLWV----FDATQSADQPARESLPEQIPVTRVRNKIDLQGLLPGIAALEAGP 344
Query: 366 NIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQ 425
I LSA G++LLR L D + E + ++AR RH+ +L +L A + ++Q
Sbjct: 345 QISLSAKTGAGLDLLRVHLRDRAGLGGSTEGA-FVARRRHLDALRLGLDHLESAQRALSQ 403
Query: 426 SEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+EL+A+DL + I G+ T+ DLL IFS FCIGK
Sbjct: 404 G-----AGVELVADDLLQAQQTFGEITGRFTSEDLLGRIFSTFCIGK 445
>gi|387130785|ref|YP_006293675.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Methylophaga sp.
JAM7]
gi|386272074|gb|AFJ02988.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Methylophaga sp.
JAM7]
Length = 452
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 198/473 (41%), Positives = 267/473 (56%), Gaps = 25/473 (5%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKP-RFATYSSFFCKNN 60
L + I+ IAT PGRGGVGI+RLSG I E K +L P R+A ++SF ++
Sbjct: 3 LIQTDTIVAIATAPGRGGVGIVRLSGNQAVVIAE----KIAGRLGPARYAKFASFTGTDD 58
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
++D G+VI+FKAP S+TGEDV+EL GHG P++L L + + G R+A PGEF++
Sbjct: 59 VVLDSGVVIHFKAPASFTGEDVVELQGHGSPVVLDKLCQTAIHHGA----RMARPGEFSE 114
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN K+DL Q EA+ DLI ++TE AA+SAM SL G FSK IN L +L +LR +E S
Sbjct: 115 RAFLNGKMDLAQAEAVADLIESATEQAARSAMRSLQGAFSKRINDFLTELTHLRMFVEAS 174
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DF +E + L + +L + L I ++ L+R G++VVL GQPN GKSSL
Sbjct: 175 IDFADEEIDF-LGEAQVDKQLQALLTTLNGIQDSARQGRLLREGISVVLAGQPNAGKSSL 233
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N L G D AIVT IAGTTRD + + I + +I+DTAG+ D N VE G
Sbjct: 234 HNQLAGHDAAIVTDIAGTTRDVLREQIHLGGLPLRISDTAGLHDATD------NAVELEG 287
Query: 301 IERTWVELKNSD-IIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNIN 359
I RT EL +D I++ V DA + T D+ I+ + P + P+ + NKID SGH
Sbjct: 288 IRRTRHELAQADHILLMVNDA--EGMTAKDEAILADLPADKPLTIIRNKIDQSGHAPERI 345
Query: 360 YKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCA 419
+ IYLSA GI LL L + E ++AR RH+ +L+ A +
Sbjct: 346 QDKDKTIIYLSAKTGAGIELLTQHLQTAV-GFHPDEQGIFIARRRHLDALHRAQQAIEAG 404
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AE+LR + L I G T DLLD IF+ FCIGK
Sbjct: 405 YACLTGMGAG-----ELLAEELRQAQQALGEITGTFTNEDLLDRIFASFCIGK 452
>gi|422606605|ref|ZP_16678613.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. mori str.
301020]
gi|330890255|gb|EGH22916.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. mori str.
301020]
Length = 456
Score = 341 bits (875), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 193/470 (41%), Positives = 275/470 (58%), Gaps = 26/470 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT GRGGVGI+R+SG E + +T LKPRFA Y F ++D+G+
Sbjct: 8 IAAIATAQGRGGVGIVRVSGPLAGRAAEAIIGRT---LKPRFAHYGPFVDDAGQVLDEGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P+S+TGEDV+EL GHGGPI+L MLL CL++G RLA PGEF++RAFLN+K
Sbjct: 65 ALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS----RLARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+ AA++A+ SL G FS+ ++ L +KLI+LR +E + DFPEE
Sbjct: 121 LDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + + N L ++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDFLADGH-VLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ + DTAG+ D ++VE IG++R
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQ-------DQVEMIGVQRALKA 292
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYK-NN 363
+ +D I+ V DA + D + ++ P V + NK D SG ++ +
Sbjct: 293 IGEADRILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKADLSGDPIDLQTSVDG 352
Query: 364 IANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKI 422
I LSA S G+ LLR L + QT ESS + AR RH+ +L A+ L
Sbjct: 353 HVTISLSARSGGEGLELLREHLKACMGYEQTSESS-FSARRRHLEALRHASDSLEH---- 407
Query: 423 INQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ EL+AED R + L I G +++DLL IFS FCIGK
Sbjct: 408 -GRAQLTLAGAGELLAEDPRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|192361438|ref|YP_001984273.1| tRNA modification GTPase TrmE [Cellvibrio japonicus Ueda107]
gi|190687603|gb|ACE85281.1| tRNA modification GTPase TrmE [Cellvibrio japonicus Ueda107]
Length = 455
Score = 341 bits (875), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 196/471 (41%), Positives = 284/471 (60%), Gaps = 29/471 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT GRGGVGI+R+SG I E + L+PR A + F + + +D+G+
Sbjct: 8 IAAIATATGRGGVGIVRISGPKARFIAERLLGIP---LQPRHAHFCDFRSHSGDTLDQGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F PHS+TGEDV+EL GHGGP+IL +LL L++G +RLA PGEF++RAFLN+K
Sbjct: 65 ALFFPNPHSFTGEDVLELQGHGGPVILDLLLREILQLG----VRLARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A+TE AA++A+ SL G FSK I L++ LI+LR +E S DFPEE
Sbjct: 121 LDLAQAEAIADLIDATTEQAARNALHSLQGAFSKRIQDLVESLIHLRIYVEASIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L I +L + ++ ++ AL+R+G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDF-LSDGKVARDLDDICHRLDSVFKEARQGALVRDGMRVVIAGRPNAGKSSLLNALSGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT I GTTRD + + I I I DTAG+ D + +EVE+IGI+R W E
Sbjct: 240 ESAIVTPIEGTTRDVLREHIHIEGMPLHIIDTAGLRD-------SPDEVEQIGIQRAWSE 292
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNF--PMNIP--VIYVWNKIDYSGHQKNINYKNN 363
++ +D ++ + D+R+ TD + I F ++ P + V NKID SG Q + ++N
Sbjct: 293 IQQADRVLLLVDSRHTAETD-PRLIWPEFVDKLDDPHKITLVRNKIDLSGEQAGL-FENT 350
Query: 364 IANIYL--SASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIK 421
YL SA+ G++ L++ L ++ + E + AR RH+ +L A ++L+
Sbjct: 351 RGQDYLGISAATGSGMDALKDHLKAIVGFNASGEGG-FTARRRHLDALERAQHFLNA--- 406
Query: 422 IINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q++ EL+AEDLR L I G+ T +DLL IFS FCIGK
Sbjct: 407 --GQAQLQGFAAGELLAEDLRQAQHALGEITGEFTPDDLLGRIFSSFCIGK 455
>gi|117918464|ref|YP_867656.1| tRNA modification GTPase TrmE [Shewanella sp. ANA-3]
gi|166991117|sp|A0KR31.1|MNME_SHESA RecName: Full=tRNA modification GTPase MnmE
gi|117610796|gb|ABK46250.1| tRNA modification GTPase TrmE [Shewanella sp. ANA-3]
Length = 453
Score = 341 bits (875), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 190/469 (40%), Positives = 277/469 (59%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG + V K PR+A Y F + +ID+G+
Sbjct: 6 IVAQATAPGRGGVGIIRISGDKATDVAMAVLGHLPK---PRYADYCDFKNASGQVIDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++FK P+S+TGEDV+EL GHGG I+L ML+ LE+ G+R+A PGEF+++AF+N+K
Sbjct: 63 ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVLEVE---GIRIAKPGEFSEQAFMNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AAKSA+ SL G+FSK ++ L+D++ +LR +E + DFP+E
Sbjct: 120 LDLTQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTHLRLYVEAAIDFPDEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ N L KI KL + K+ ++IR G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 VDF-LSDGKIANALYKIIDKLSAVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D + VE+IGIER W E
Sbjct: 239 ESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRD-------TTDTVEQIGIERAWNE 291
Query: 308 LKNSDIIIYVQDA----RYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNN 363
+ ++D ++++ D D H D I P N+ V V NK D +G + +
Sbjct: 292 INSADRVLFMVDGTTTDAVDPH-DIWPDFINRLPANLGVTVVRNKADLTGENLAMTEEKG 350
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
+ +SA +G+ L+ L L+ +E ++AR RH+ +L+ A +L +
Sbjct: 351 YSVYRISAKTGLGVEELKQHLKSLMGYKSNLEGG-FIARRRHLEALDVAASHLQ-----L 404
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR LS I G+ T++DLL IFS FCIGK
Sbjct: 405 GKEQLEIYLAGELLAEELRMAQLALSEITGRFTSDDLLGKIFSSFCIGK 453
>gi|116053718|ref|YP_794045.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa UCBPP-PA14]
gi|421177830|ref|ZP_15635475.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa CI27]
gi|122256262|sp|Q02DE1.1|MNME_PSEAB RecName: Full=tRNA modification GTPase MnmE
gi|115588939|gb|ABJ14954.1| putative GTPase for tRNA modification and thiophene and furan
oxidation [Pseudomonas aeruginosa UCBPP-PA14]
gi|404528692|gb|EKA38755.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa CI27]
Length = 455
Score = 341 bits (875), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 193/476 (40%), Positives = 270/476 (56%), Gaps = 25/476 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M I+ IAT GRGGVGI+R+SG I V + +QLK R A Y F
Sbjct: 1 MQAATETIVAIATAQGRGGVGIVRISGPLAGQIAVAV---SGRQLKARHAHYGPFLDAGG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+ID+GL +YF P+S+TGEDV+EL GHGGP++L +L+ CLE+G R A PGEF++
Sbjct: 58 QVIDEGLSLYFPGPNSFTGEDVLELQGHGGPVVLDLLVQRCLELGA----RQARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI AS+E AA++A+ SL G+FS+ ++ L ++LI+LR +E +
Sbjct: 114 RAFLNDKLDLAQAEAIADLIEASSEQAARNALRSLQGEFSRRVHALTEQLISLRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + + + + L K++ +L + ++ + AL+R+G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDFLADGH-VLGLLEKVRTELSTVQREASQGALLRDGMTVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + VEKIG
Sbjct: 233 LNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTE-------DHVEKIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
+ER + +D ++ V DA + D + + P V + NK D S
Sbjct: 286 VERALKAIGEADRVLLVVDATAPEAADPFSLWPEFLDQRPEPGKVTLIRNKADLSTESIG 345
Query: 358 I-NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYL 416
+ + I LSA G+ LLR L + QT ES + AR RH+ +L +A L
Sbjct: 346 LEESADGHVTITLSARTGAGLELLREHLKACMGFEQTAESG-FSARRRHLEALRQAGQAL 404
Query: 417 SCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
S+ EL+AEDLR + L I G T +DLL IFS FCIGK
Sbjct: 405 EH-----GHSQLIHNGAGELLAEDLRQAQQHLGEITGAFTPDDLLGRIFSSFCIGK 455
>gi|398792987|ref|ZP_10553516.1| tRNA modification GTPase TrmE [Pantoea sp. YR343]
gi|398211776|gb|EJM98392.1| tRNA modification GTPase TrmE [Pantoea sp. YR343]
Length = 454
Score = 341 bits (875), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 190/478 (39%), Positives = 280/478 (58%), Gaps = 31/478 (6%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ + I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F + +
Sbjct: 1 MSHSDTIVAQATPPGRGGVGILRISGAKAAEVAQAVLGKLPK---PRYADYLPFTDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL + + GLR+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIVAL---PGLRIAQPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS IN L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSLRINALVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNVVIGDLDGVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHT-------DFDKKIIKNFPMNIPVIYVWNKIDYSGH 354
ER W E++ +D ++++ D T DF + P +P+ V NK D +G
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDATEAAAIWPDF----VARLPEALPITVVRNKADMTGE 342
Query: 355 QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ N + I LSA G+ LR+ L + +E +LAR RH+ +L A
Sbjct: 343 VLGLTEVNGHSLIRLSARTGEGVEALRDHLKQSMGFAGNMEGG-FLARRRHLQALELAAT 401
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L + + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 402 HLQQGKHQLLGAWAG-----ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|113972266|ref|YP_736059.1| tRNA modification GTPase TrmE [Shewanella sp. MR-4]
gi|123324470|sp|Q0HD65.1|MNME_SHESM RecName: Full=tRNA modification GTPase MnmE
gi|113886950|gb|ABI41002.1| tRNA modification GTPase trmE [Shewanella sp. MR-4]
Length = 453
Score = 341 bits (875), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 190/469 (40%), Positives = 277/469 (59%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG + V K PR+A Y F + +ID+G+
Sbjct: 6 IVAQATAPGRGGVGIIRISGDKATDVAMAVLGHLPK---PRYADYCDFKNASGQVIDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++FK P+S+TGEDV+EL GHGG I+L ML+ LE+ G+R+A PGEF+++AF+N+K
Sbjct: 63 ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVLEVE---GIRIAKPGEFSEQAFMNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AAKSA+ SL G+FSK ++ L+D++ +LR +E + DFP+E
Sbjct: 120 LDLTQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTHLRLYVEAAIDFPDEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ N L KI KL + K+ ++IR G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 VDF-LSDGKIANALYKIIDKLSVVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D + VE+IGIER W E
Sbjct: 239 ESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRD-------TTDTVEQIGIERAWNE 291
Query: 308 LKNSDIIIYVQDA----RYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNN 363
+ ++D ++++ D D H D I P N+ V V NK D +G + +
Sbjct: 292 INSADRVLFMVDGTTTDAVDPH-DIWPDFIDRLPANLGVTVVRNKADLTGENLAMTEEKG 350
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
+ +SA +G+ L+ L L+ +E ++AR RH+ +L+ A +L +
Sbjct: 351 YSVYRISAKTGLGVEELKQHLKSLMGYQSNLEGG-FIARRRHLEALDVAASHLQ-----L 404
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR LS I G+ T++DLL IFS FCIGK
Sbjct: 405 GKEQLEIYLAGELLAEELRMAQLALSEITGRFTSDDLLGKIFSSFCIGK 453
>gi|385340833|ref|YP_005894705.1| tRNA modification GTPase TrmE [Neisseria meningitidis G2136]
gi|325199077|gb|ADY94533.1| tRNA modification GTPase TrmE [Neisseria meningitidis G2136]
Length = 427
Score = 341 bits (874), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 193/451 (42%), Positives = 267/451 (59%), Gaps = 24/451 (5%)
Query: 22 IIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPHSYTGED 81
+IR+SGKNL + E +C KT K PR ATY+ F + ID GL+++F AP S+TGED
Sbjct: 1 MIRISGKNLLPMAEALCGKTPK---PRVATYADFTDADGQAIDSGLLLFFAAPASFTGED 57
Query: 82 VIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVEAIIDLIN 141
VIEL GHGGP+++ MLL+ CLE+G RLA PGEFTKRAFLN+KLDL Q E + DLI+
Sbjct: 58 VIELQGHGGPVVMDMLLNRCLELGA----RLAEPGEFTKRAFLNDKLDLAQAEGVADLID 113
Query: 142 ASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELILNKNDFFNEL 201
AS+ SAA+ A+ SL G FS+ I+ L++ LI LR L+E + DFPEE+ + L D +L
Sbjct: 114 ASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPEEDIDF-LEAADARGKL 172
Query: 202 IKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRD 261
+++ + ++ ++ A++R GLNVVL+G PNVGKSSL N+L G +VAIVT IAGTTRD
Sbjct: 173 DGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALAGDEVAIVTDIAGTTRD 232
Query: 262 KITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDAR 321
+ + I I+ I DTAG +++ + VE+IGIER+ + +D+ + + D R
Sbjct: 233 AVRERILIDGVPVHIVDTAG-------LRETDDVVERIGIERSRKAVSEADVALVLVDPR 285
Query: 322 YDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKRIGINLLR 381
+ D + I+ P + I + +K D H I LSA G++ L+
Sbjct: 286 -EGVNDKTRAILDALPPELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKTGDGLDALK 344
Query: 382 NTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDL 441
TLL Q +LAR RH+++L A LS A N +EL AE L
Sbjct: 345 RTLLREA-GWQGEGEGLFLARTRHVNALKAAQEELSLAALCGNH-------QIELFAEHL 396
Query: 442 RFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
R I G+ T +DLL IFS+FCIGK
Sbjct: 397 RLAQVACGEITGEFTADDLLGVIFSRFCIGK 427
>gi|421171582|ref|ZP_15629437.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa ATCC 700888]
gi|404519783|gb|EKA30501.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa ATCC 700888]
Length = 455
Score = 341 bits (874), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 193/476 (40%), Positives = 270/476 (56%), Gaps = 25/476 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M I+ IAT GRGGVGI+R+SG I V + +QLK R A Y F
Sbjct: 1 MQAATETIVAIATAQGRGGVGIVRVSGPLAGQIAVAV---SGRQLKARHAHYGPFLDAGG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+ID+GL +YF P+S+TGEDV+EL GHGGP++L +L+ CLE+G R A PGEF++
Sbjct: 58 QVIDEGLSLYFPGPNSFTGEDVLELQGHGGPVVLDLLVQRCLELGA----RQARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI AS+E AA++A+ SL G+FS+ ++ L ++LI+LR +E +
Sbjct: 114 RAFLNDKLDLAQAEAIADLIEASSEQAARNALRSLQGEFSRRVHALTEQLISLRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + + + + L K++ +L + ++ + AL+R+G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDFLADGH-VLGLLEKVRTELSTVQREASQGALLRDGMTVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + VEKIG
Sbjct: 233 LNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTE-------DHVEKIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
+ER + +D ++ V DA + D + + P V + NK D S
Sbjct: 286 VERALKAIGEADRVLLVVDATAPEAADPFSLWPEFLDQRPEPGKVTLIRNKADLSTESIG 345
Query: 358 I-NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYL 416
+ + I LSA G+ LLR L + QT ES + AR RH+ +L +A L
Sbjct: 346 LEESADGHVTITLSARTGAGLELLREHLKACMGFEQTAESG-FSARRRHLEALRQAGQAL 404
Query: 417 SCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
S+ EL+AEDLR + L I G T +DLL IFS FCIGK
Sbjct: 405 EH-----GHSQLIHNGAGELLAEDLRQAQQHLGEITGAFTPDDLLGRIFSSFCIGK 455
>gi|205422232|sp|Q12HM9.2|MNME_SHEDO RecName: Full=tRNA modification GTPase MnmE
Length = 453
Score = 341 bits (874), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 191/471 (40%), Positives = 277/471 (58%), Gaps = 29/471 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG ++ V K K R+A Y F ++ +ID+G+
Sbjct: 6 IVAQATAPGRGGVGIIRISGDLATNVAMAVLGKVPK---TRYADYCDFKDADDRVIDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++FK P+S+TGEDV+EL GHGG I+L ML+ +++ G+R+A PGEF+++AFLN+K
Sbjct: 63 ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMQVS---GVRIAKPGEFSEQAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AAKSA+ SL G+FSK ++ L++++ NLR +E + DFP+E
Sbjct: 120 LDLTQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVEQVTNLRLYVEAAIDFPDEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ N L +I KL + K+ ++IR G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 VDF-LSDGKIANALYRIIAKLDTVQDSAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D ++ VEKIGIER W E
Sbjct: 239 ESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRD-------TLDTVEKIGIERAWAE 291
Query: 308 LKNSDIIIYVQDA----RYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNN 363
+ +D ++++ D D H D I P + V V NK D +G + +
Sbjct: 292 IATADRVLFMVDGTTTDAVDPH-DIWPDFIDRLPTRLGVTVVRNKADLTGESLEKSQEQG 350
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
+SA +G+ L+ L L+ +E ++AR RH+ +L A +L
Sbjct: 351 FDVYRISAKTGLGVEELKQHLKSLMGYQSNLEGG-FIARRRHLEALELAASHLQLG---- 405
Query: 424 NQSEKNFEKNL--ELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ E L EL+AE+LR LS I GK T++DLL IFS FCIGK
Sbjct: 406 ---KEQLEVYLAGELLAEELRMAQMALSEITGKFTSDDLLGKIFSSFCIGK 453
>gi|387824951|ref|YP_005824422.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Francisella cf.
novicida 3523]
gi|332184417|gb|AEE26671.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Francisella cf.
novicida 3523]
Length = 450
Score = 341 bits (874), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 209/478 (43%), Positives = 293/478 (61%), Gaps = 34/478 (7%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M TK++ I+ IATP G GG+GI+R+SG + I E K TK+ LKPR+A +S+ + ++
Sbjct: 1 MYTKDT-IVAIATPQGNGGIGIVRISGIDALVIAE---KLTKRHLKPRYAIFSNIY-NDS 55
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
IID G+VI+FKAP SYTGEDV+E+ HG P IL++++ + L + G R+A GEFT+
Sbjct: 56 EIIDHGIVIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKAAL----NCGARMAKAGEFTE 111
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLNNKLDL Q EA+ D+INAS+E AAKSA SL G FSK IN LL+KLI LR +E S
Sbjct: 112 RAFLNNKLDLAQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYVEAS 171
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE L L +I K +L + K+ ++ G+ ++L+G+PN GKSSL
Sbjct: 172 IDFPEEEINF-LEDQKIHTSLEEIYKTILDVKNSCKQGVILAEGITLILVGKPNAGKSSL 230
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVTSIAGTTRD + + IQIN I DTAG ++ + + +E G
Sbjct: 231 LNALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAG-------LRNSDDIIESEG 283
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFD--KKIIKNF----PMNIPVIYVWNKIDYSGH 354
I+R +++ +D +++V D + F K II F P NI + YV NKID
Sbjct: 284 IKRAIKKIQEADQVLFVTDDYTNSQVKFSDIKDIIPEFYDQIPKNIDITYVHNKIDLLKE 343
Query: 355 QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+N+ +IY+SA IGI+ L+ +L+ + T E S Y ARERH+ ++N A
Sbjct: 344 VP----QNHDNHIYISAENNIGIDRLKEHILNKVGYTNQNE-SIYTARERHVTAINNAFE 398
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ A + + N EL+AE+L E L+SI G+ +++DLL IFS FCIGK
Sbjct: 399 HIKLAKQQLELG------NGELLAEELLIVQECLNSITGEFSSDDLLGKIFSSFCIGK 450
>gi|336313668|ref|ZP_08568607.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Shewanella sp.
HN-41]
gi|335862689|gb|EGM67881.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Shewanella sp.
HN-41]
Length = 458
Score = 341 bits (874), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 192/469 (40%), Positives = 277/469 (59%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG + V Q K R+A Y F + +ID+G+
Sbjct: 11 IVAQATAPGRGGVGIIRISGDKATDVAMAVLGH---QPKTRYADYCDFKNASGQVIDQGI 67
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++FK P+S+TGEDV+EL GHGG I+L ML+ LE+ G+R+A PGEF+++AF+N+K
Sbjct: 68 ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVLEVE---GIRIAKPGEFSEQAFMNDK 124
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AAKSA+ SL G+FSK ++ L+D++ NLR +E + DFP+E
Sbjct: 125 LDLTQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPDEE 184
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ N L KI KL + K+ ++IR G+ VV+ G+PN GKSSL N+L G
Sbjct: 185 VDF-LSDGKIANALYKIIDKLDLVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGK 243
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D + VE+IGIER W E
Sbjct: 244 ESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRD-------TTDTVEQIGIERAWNE 296
Query: 308 LKNSDIIIYVQD----ARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNN 363
+ ++D ++++ D A D H D I P N+ V + NK D +G + +
Sbjct: 297 INSADRVLFMVDGTTTAAVDPH-DIWPDFIDRLPSNLGVTVIRNKADLTGEDLMMTEEQG 355
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
+ +SA +G+ L+ L L+ +E ++AR RH+ +L A +L +
Sbjct: 356 YSVYRISAKTGLGVEELKQHLKSLMGYQSNLEGG-FIARRRHLEALEIAASHLQ-----L 409
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR LS I GK T++DLL IFS FCIGK
Sbjct: 410 GKEQLEIYLAGELLAEELRMAQLALSEITGKFTSDDLLGKIFSSFCIGK 458
>gi|317494662|ref|ZP_07953074.1| tRNA modification GTPase TrmE [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316917264|gb|EFV38611.1| tRNA modification GTPase TrmE [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 454
Score = 340 bits (873), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 190/479 (39%), Positives = 287/479 (59%), Gaps = 33/479 (6%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++++ I+ ATPPGRGGVGI+R+SG+ + + K K PR+A Y F + +
Sbjct: 1 MSQSDTIVAQATPPGRGGVGILRISGRQAEEVAMALLGKLPK---PRYADYLPFKDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ +YF P+S+TGEDV+EL GHGGP+IL +LL L + +R+A PGEF++R
Sbjct: 58 VLDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILLMPN---VRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSNRVNQLVEALTHLRIFVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + +L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNGVMGELQAVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFD---KKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D + + + P +P+ V NK D +G +
Sbjct: 287 ERAWNEIEQADRVLFMVDGTTTDAIEPATIWPEFMARLPKTLPITVVRNKADVTGETLGL 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ N + I LSA GI++LR+ L + T +E +LAR RH+ +L A +L
Sbjct: 347 SEVNGYSLIRLSARTGEGIDVLRDHLKQSMGFTSNMEGG-FLARRRHLQALETAAMHL-- 403
Query: 419 AIKIINQSEKNFEKNL-----ELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
E+ E+ L EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 404 --------EQGKEQLLSAYAGELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|90194084|gb|ABD92603.1| ThdF [Bibersteinia trehalosi]
Length = 436
Score = 340 bits (873), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 192/466 (41%), Positives = 282/466 (60%), Gaps = 43/466 (9%)
Query: 13 TPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFK 72
TP GRGGVGI+R+SG + + V KT LKPR A Y F ++ ++D+G+ ++FK
Sbjct: 1 TPIGRGGVGILRISGPLAEKVAQEVLGKT---LKPRMANYLPFKDQDGTVLDQGIALFFK 57
Query: 73 APHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQ 132
AP+S+TGEDV+EL GHGG IIL +LL L+I G+R+A GEF+++AFLN+KLDL Q
Sbjct: 58 APNSFTGEDVLELQGHGGQIILDLLLQRILKIE---GIRIARAGEFSEQAFLNDKLDLAQ 114
Query: 133 VEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELIL 192
EAI DLI+A++E AA+SA+ SL G+FS +N L+D +I LRT +E + DFP+E + +
Sbjct: 115 AEAIADLIDATSEQAARSALKSLQGEFSNKVNELVDSVIYLRTYVEAAIDFPDEEIDFLA 174
Query: 193 NKNDFFNELIKIKKKLLKIIQQ-------GKKRALIRNGLNVVLIGQPNVGKSSLFNSLV 245
+ KI+ KL +II Q K+ +++R G+ VV+ G PN GKSSL N+L
Sbjct: 175 DG--------KIEAKLNEIIAQLDGVRKEAKQGSILREGMKVVIAGNPNAGKSSLLNALA 226
Query: 246 GSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTW 305
G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVEKIGI+R W
Sbjct: 227 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVEKIGIQRAW 279
Query: 306 VELKNSDIIIYVQDARYDKHTDFDKK---IIKNFPMNIPVIYVWNKIDYSGHQKNINYKN 362
E+ +D ++ + D+ F ++ + P+ +PV + NK+D SG Q+ + ++
Sbjct: 280 DEIGQADHVLLMIDSTLSAADQFQQEWADFLAKLPVKMPVTVIRNKVDLSGEQEGVEQQD 339
Query: 363 NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP---YLARERHIHSLNEANYYLSCA 419
N I LSA ++G+ LLR L +K+ +SS ++AR RH+ +L A +L
Sbjct: 340 NFTLIRLSAQTKVGVELLREHL----KKSMGYQSSTEGGFIARRRHLVALETAAEHLERG 395
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
+ Q EL+AE+LR LS I G+ T++DLL NIF
Sbjct: 396 HTQLTQFMAG-----ELLAEELRMVQNALSEITGQFTSDDLLGNIF 436
>gi|372267018|ref|ZP_09503066.1| tRNA modification GTPase mnmE [Alteromonas sp. S89]
Length = 457
Score = 340 bits (873), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 186/471 (39%), Positives = 278/471 (59%), Gaps = 30/471 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I +ATPPGRGG+G+IRLSG + I E +C K+ KPRFA Y F + ++D+GL
Sbjct: 11 IAAVATPPGRGGIGVIRLSGPDARKIGEQLCAKS---FKPRFAHYCDF-AHRDQLLDQGL 66
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+Y P+S+TGEDV+EL GHGGP+IL LL++ +E+G R A PGEF++RAFLN+K
Sbjct: 67 ALYLPGPNSFTGEDVVELQGHGGPVILDTLLAALIEMGA----RQARPGEFSERAFLNDK 122
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A T AA++A+ SL G FS+ I L +KL +LR +E + DFPEE
Sbjct: 123 LDLAQAEAIADLIDAGTTQAAQNALRSLQGVFSEKIEDLAEKLTHLRIYVEAAIDFPEEE 182
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + ++ + +L + + ++ A+ R G+ V + G+PN GKSSL N+L G
Sbjct: 183 IDFLADGK-VAADIEALLAQLDSVEAEARQGAITREGMQVAIAGKPNAGKSSLLNALAGK 241
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
D AIVT IAGTTRD + + I I+ I DTAG ++++ ++VE+IG++R W E
Sbjct: 242 DSAIVTDIAGTTRDVLREHIHIDGMPLHIADTAG-------LRESPDQVERIGMQRAWDE 294
Query: 308 LKNSDIIIYVQDARYDKHTDFD-KKIIKNFPMNIP----VIYVWNKIDYSGHQKNIN-YK 361
+ ++D ++ V DA + T D ++ F +P + V NKID + + + +
Sbjct: 295 IHSADRVLLVVDAA--EVTSLDPEQAWPEFTAQLPDPDKLTLVVNKIDLTDYSSGLQAHS 352
Query: 362 NNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIK 421
+ + + +SA GIN LR+ L + E S + AR RH+ +L +A +++
Sbjct: 353 DGVPVVAISAKTGAGINALRDHLKQCMGYQSGNEGS-FSARRRHLDALAQARAFITA--- 408
Query: 422 IINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q++ EL+AEDLR + L I G T ++LL IF FCIGK
Sbjct: 409 --GQAQLTASGAGELLAEDLRQAQQSLGEITGAMTADELLGKIFGSFCIGK 457
>gi|313111481|ref|ZP_07797282.1| putative GTPase for tRNA modification and thiophene and furan
oxidation [Pseudomonas aeruginosa 39016]
gi|386069240|ref|YP_005984544.1| tRNA modification GTPase [Pseudomonas aeruginosa NCGM2.S1]
gi|310883784|gb|EFQ42378.1| putative GTPase for tRNA modification and thiophene and furan
oxidation [Pseudomonas aeruginosa 39016]
gi|348037799|dbj|BAK93159.1| tRNA modification GTPase [Pseudomonas aeruginosa NCGM2.S1]
Length = 455
Score = 340 bits (873), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 192/476 (40%), Positives = 270/476 (56%), Gaps = 25/476 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M I+ IAT GRGGVGI+R+SG + V + +QLK R A Y F
Sbjct: 1 MQAATETIVAIATAQGRGGVGIVRVSGPLAGQMAVAV---SGRQLKARHAHYGPFLDAGG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+ID+GL +YF P+S+TGEDV+EL GHGGP++L +L+ CLE+G R A PGEF++
Sbjct: 58 QVIDEGLSLYFPGPNSFTGEDVLELQGHGGPVVLDLLVQRCLELGA----RQARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI AS+E AA++A+ SL G+FS+ ++ L ++LI+LR +E +
Sbjct: 114 RAFLNDKLDLAQAEAIADLIEASSEQAARNALRSLQGEFSRRVHALTEQLISLRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + + + + L K++ +L + ++ + AL+R+G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDFLADGH-VLGLLEKVRTELSTVQREASQGALLRDGMTVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + VEKIG
Sbjct: 233 LNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTE-------DHVEKIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
+ER + +D ++ V DA + D + + P V + NK D S
Sbjct: 286 VERALKAIGEADRVLLVVDATAPEAADPFSLWPEFLDQRPEPGKVTLIRNKADLSTESIG 345
Query: 358 I-NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYL 416
+ + I LSA G+ LLR L + QT ES + AR RH+ +L +A L
Sbjct: 346 LEESADGHVTITLSARTSAGLELLREHLKACMGFEQTAESG-FSARRRHLEALRQAGQAL 404
Query: 417 SCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
S+ EL+AEDLR + L I G T +DLL IFS FCIGK
Sbjct: 405 EH-----GHSQLIHNGAGELLAEDLRQAQQHLGEITGAFTPDDLLGRIFSSFCIGK 455
>gi|429210965|ref|ZP_19202131.1| tRNA modification GTPase mnmE [Pseudomonas sp. M1]
gi|428158379|gb|EKX04926.1| tRNA modification GTPase mnmE [Pseudomonas sp. M1]
Length = 455
Score = 340 bits (873), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 189/476 (39%), Positives = 279/476 (58%), Gaps = 25/476 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M I +AT GRGGVGI+R+SG + I + ++ +PRFA Y F+
Sbjct: 1 MNAARETIAAVATAQGRGGVGIVRVSGPR---ALPIAISLSGREPQPRFAHYGPFYDDQG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+ID+GL+++F+ P+S+TGEDV+ELHGHGGP++L MLL CLE+G R A PGEF++
Sbjct: 58 EVIDEGLLLFFRGPNSFTGEDVVELHGHGGPVVLDMLLQRCLELGS----RQARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G+FS+ ++ L ++LI LR +E +
Sbjct: 114 RAFLNDKLDLAQAEAIADLIEASSAQAARNAVRSLQGEFSRRVHQLTEQLIQLRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + + + + ++L K++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDFLADGH-VLSQLDKVRAELAGVLREAGQGALLRDGMTVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + VEKIG
Sbjct: 233 LNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTE-------DHVEKIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
+ER + +D ++ V D+ + D + + P V + NK D S
Sbjct: 286 VERALKAIGEADRVLLVIDSTAPEAADPFALWPEFLDERPDPTRVTLIRNKADLSTSPVG 345
Query: 358 I-NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYL 416
I + + LSA G++LLR L + QT ESS + AR RH+ +L +A +L
Sbjct: 346 IEESADGHVTLTLSARSGDGLDLLREHLKACMGFEQTAESS-FSARRRHLEALRQAGQHL 404
Query: 417 SCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 405 DH-----GHAQLLLAGAGELLAEDLRHAQQALGEITGAFSSDDLLGRIFSSFCIGK 455
>gi|404400605|ref|ZP_10992189.1| tRNA modification GTPase TrmE [Pseudomonas fuscovaginae UPB0736]
Length = 456
Score = 340 bits (873), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 190/470 (40%), Positives = 278/470 (59%), Gaps = 26/470 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I +AT GRGGVGI+R+SG + + + ++LKPR+A Y F + ++D+GL
Sbjct: 8 IAAVATAQGRGGVGIVRISGPLAQAAALAI---SGRELKPRYAHYGPFMGETGEVLDEGL 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P+S+TGEDV+EL GHGGP++L MLL CL++G RLA PGEF++RAFLN+K
Sbjct: 65 ALYFPGPNSFTGEDVLELQGHGGPVVLDMLLQRCLQLG----CRLARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+ AA++A+ SL G FS ++ L ++LI+LR +E + DFPEE
Sbjct: 121 LDLAQAEAIADLIEASSTQAARNALRSLQGAFSHRVHHLTEQLISLRIYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + + L ++ +L +I++ + AL+R+G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDFLADGH-VLAMLDAVRDELSTVIREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ + DTAG+ D + + VEKIG+ER
Sbjct: 240 EAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTD-------DHVEKIGVERALKA 292
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY-KNN 363
+ +D ++ V DA + D + ++ P V + NK D +G Q + ++
Sbjct: 293 IGEADRVLLVVDATAPEAVDPFALWPEFLEQRPDPAKVTLIRNKADLTGEQIALQVSEDG 352
Query: 364 IANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKI 422
I LSA S G+ LLR+ L + QT ESS + AR RH+ +L A+ L
Sbjct: 353 HVTISLSAKSAGEGLELLRDHLKACMGYEQTSESS-FSARRRHLEALRFASSALEH---- 407
Query: 423 INQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 408 -GHAQLTLAGAGELLAEDLRQAQQFLGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|91795119|ref|YP_564770.1| tRNA modification GTPase TrmE [Shewanella denitrificans OS217]
gi|91717121|gb|ABE57047.1| tRNA modification GTPase trmE [Shewanella denitrificans OS217]
Length = 466
Score = 340 bits (873), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 191/471 (40%), Positives = 277/471 (58%), Gaps = 29/471 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG ++ V K K R+A Y F ++ +ID+G+
Sbjct: 19 IVAQATAPGRGGVGIIRISGDLATNVAMAVLGKVPK---TRYADYCDFKDADDRVIDQGI 75
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++FK P+S+TGEDV+EL GHGG I+L ML+ +++ G+R+A PGEF+++AFLN+K
Sbjct: 76 ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMQVS---GVRIAKPGEFSEQAFLNDK 132
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AAKSA+ SL G+FSK ++ L++++ NLR +E + DFP+E
Sbjct: 133 LDLTQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVEQVTNLRLYVEAAIDFPDEE 192
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ N L +I KL + K+ ++IR G+ VV+ G+PN GKSSL N+L G
Sbjct: 193 VDF-LSDGKIANALYRIIAKLDTVQDSAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGK 251
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D ++ VEKIGIER W E
Sbjct: 252 ESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRD-------TLDTVEKIGIERAWAE 304
Query: 308 LKNSDIIIYVQDA----RYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNN 363
+ +D ++++ D D H D I P + V V NK D +G + +
Sbjct: 305 IATADRVLFMVDGTTTDAVDPH-DIWPDFIDRLPTRLGVTVVRNKADLTGESLEKSQEQG 363
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
+SA +G+ L+ L L+ +E ++AR RH+ +L A +L
Sbjct: 364 FDVYRISAKTGLGVEELKQHLKSLMGYQSNLEGG-FIARRRHLEALELAASHLQLG---- 418
Query: 424 NQSEKNFEKNL--ELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ E L EL+AE+LR LS I GK T++DLL IFS FCIGK
Sbjct: 419 ---KEQLEVYLAGELLAEELRMAQMALSEITGKFTSDDLLGKIFSSFCIGK 466
>gi|422348888|ref|ZP_16429780.1| tRNA modification GTPase TrmE [Sutterella wadsworthensis
2_1_59BFAA]
gi|404658940|gb|EKB31802.1| tRNA modification GTPase TrmE [Sutterella wadsworthensis
2_1_59BFAA]
Length = 456
Score = 340 bits (873), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 184/477 (38%), Positives = 290/477 (60%), Gaps = 31/477 (6%)
Query: 3 TKNSPIIGIATPPGRGGVGIIRLS-GKNLWSIVEIVCKKTKK--QLKPRFATYSSFFCKN 59
+ PII +AT GRGG+GI+RLS GK L + +IV + + LK R+A F +
Sbjct: 4 SDKDPIIAVATAAGRGGIGILRLSFGKALEA--QIVGRLFGENCTLKARYAHLLPFLGTD 61
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFT 119
++D+ +V+ F APHSYTGE V+E+ HGGP++L +++ +CLE + +GLR+A PGEFT
Sbjct: 62 GGVLDRAIVLLFPAPHSYTGESVLEIQAHGGPVLLSLIMRTCLEKCRDLGLRMAEPGEFT 121
Query: 120 KRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEF 179
+RAF+N ++DL Q EA+ DLI+A +ESA ++A SLSG+FS + + + LR IE
Sbjct: 122 RRAFMNGRMDLTQAEAVADLIDAVSESAVQAAGRSLSGEFSNAVRDVDGNITELRAFIEA 181
Query: 180 SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
+ DFPEE+ ++I L++ + + I++ ++ ++R G+ V ++G PNVGKSS
Sbjct: 182 TLDFPEEDIDVI-GSEKVRTRLVQAETGIRAILENARQGQVLREGVTVAIVGSPNVGKSS 240
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N+L +VAIVT I GTTRD+I + +N K+ DTAG I+ + VE
Sbjct: 241 LLNALAQEEVAIVTDIPGTTRDRIEHWVSLNGVPVKMVDTAG-------IRTTDDVVESK 293
Query: 300 GIERTWVELKNSDIIIYVQDA----RYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355
GIERT VE++ +D++++++DA R D T+ K++K +P+I V NK+D
Sbjct: 294 GIERTLVEIRKADVVLHLKDASGLIRDD--TEVLDKVLKEVRHGVPLITVNNKVDLC--- 348
Query: 356 KNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYY 415
+ I +SA + +G++ L+ LL+++ T + ++ARERH+ L A +
Sbjct: 349 ---ESAASGGEIAISAKQGVGLSELKARLLEVVGMAATTDGV-FMARERHLQCLKTAAEH 404
Query: 416 LSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+S A+ +I + + EL+AE+LR L I+G++TT D+L IFS+FCIGK
Sbjct: 405 VSRALLLI-----DCDPMPELVAEELRLASRALGEILGETTTEDILGMIFSKFCIGK 456
>gi|421153068|ref|ZP_15612630.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa ATCC 14886]
gi|404524352|gb|EKA34701.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa ATCC 14886]
Length = 455
Score = 340 bits (873), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 192/476 (40%), Positives = 270/476 (56%), Gaps = 25/476 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M I+ IAT GRGGVGI+R+SG + V + +QLK R A Y F
Sbjct: 1 MQAATETIVAIATAQGRGGVGIVRVSGPLAGQMAVAV---SGRQLKARHAHYGPFLDAGG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+ID+GL +YF P+S+TGEDV+EL GHGGP++L +L+ CLE+G R A PGEF++
Sbjct: 58 QVIDEGLSLYFPGPNSFTGEDVLELQGHGGPVVLDLLVQRCLELGA----RQARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI AS+E AA++A+ SL G+FS+ ++ L ++LI+LR +E +
Sbjct: 114 RAFLNDKLDLAQAEAIADLIEASSEQAARNALRSLQGEFSRRVHALTEQLISLRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + + + + L K++ +L + ++ + AL+R+G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDFLADGH-VLGLLEKVRTELSTVQREASQGALLRDGMTVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + VEKIG
Sbjct: 233 LNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTE-------DHVEKIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
+ER + +D ++ V DA + D + + P V + NK D S
Sbjct: 286 VERALKAIGEADRVLLVVDATAPEAADPFSLWPEFLDQRPEPGKVTLIRNKADLSTESIG 345
Query: 358 I-NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYL 416
+ + I LSA G+ LLR L + QT ES + AR RH+ +L +A L
Sbjct: 346 LEESADGHVTITLSARTGAGLELLREHLKACMGFEQTAESG-FSARRRHLEALRQAGQAL 404
Query: 417 SCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
S+ EL+AEDLR + L I G T +DLL IFS FCIGK
Sbjct: 405 EH-----GHSQLIHNGAGELLAEDLRQAQQHLGEITGAFTPDDLLGRIFSSFCIGK 455
>gi|456064445|ref|YP_007503415.1| tRNA modification GTPase TrmE [beta proteobacterium CB]
gi|455441742|gb|AGG34680.1| tRNA modification GTPase TrmE [beta proteobacterium CB]
Length = 460
Score = 340 bits (872), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 192/479 (40%), Positives = 281/479 (58%), Gaps = 26/479 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M+T+ PII +AT PG+ GVG+IR+SG+ L + E + K L PR A +
Sbjct: 1 MMTRKLPIIAVATAPGKAGVGVIRISGQQLLPMAEALFHKA---LAPRQANLLTLRDARG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID+ + IYF AP S+TGEDV+EL HGGP +L +++ CLE+GK L +A PGEF+
Sbjct: 58 ESIDQLIAIYFAAPASFTGEDVLELQCHGGPQLLELVMKRCLELGKDQSLVIAEPGEFSL 117
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RA+LNNK+DL Q EAI DLI+A +E+A + A SL G FS IN L++++ LR L+E +
Sbjct: 118 RAYLNNKIDLAQAEAIADLIDAQSEAAVRGAARSLQGAFSNDINSLIEEITQLRILVEST 177
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRA-LIRNGLNVVLIGQPNVGKSS 239
DFPEE E + N + + + + LK +++G K+ ++R+G+ +VL G PNVGKSS
Sbjct: 178 LDFPEEEIEFLENAQ--ARQRLSMVMQKLKALREGAKQGKILRDGVQLVLAGAPNVGKSS 235
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N L G +VAIVT IAGTTRD++ ++I IN I DTAG +++ + VE
Sbjct: 236 LLNRLAGEEVAIVTPIAGTTRDRVKESITINGVPMHIIDTAG-------LRETSDLVEAK 288
Query: 300 GIERTWVELKNSDIIIYVQDARYDKHT------DFDKKIIKNFPMNIPVIYVWNKIDYSG 353
GIER+W ++ +D++I++QD + + +I+K P PV+ V NK D
Sbjct: 289 GIERSWDAIRTADLVIFLQDPSAKETVEGAEALELKTQILKALPPKCPVLEVGNKSDL-- 346
Query: 354 HQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEAN 413
K +++ +SA GI L+ +L+ + T E + +AR RH+ L+ A
Sbjct: 347 LDKLSAKHGESSSLLISAKTGEGIEDLKQRILESVGWGGTQEGA-IVARRRHLDCLDRAA 405
Query: 414 YYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L + Q + +LEL AE+LR ++L I GK +DLL IFSQFCIGK
Sbjct: 406 THLDKS----QQFAADGSISLELFAEELRLAQDQLGQITGKLLPDDLLGKIFSQFCIGK 460
>gi|308051500|ref|YP_003915066.1| tRNA modification GTPase trmE [Ferrimonas balearica DSM 9799]
gi|307633690|gb|ADN77992.1| tRNA modification GTPase trmE [Ferrimonas balearica DSM 9799]
Length = 455
Score = 340 bits (872), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 187/477 (39%), Positives = 276/477 (57%), Gaps = 27/477 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M I+ AT PG+GGVGI+R+SG ++ V K K R+A Y F +
Sbjct: 1 MTDHQDTIVAQATAPGQGGVGIVRVSGPLAETVAIHVLGKVPKT---RYAEYLPFKDDSG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
++D+G+ + FK P+S+TGEDV+EL GHGGP++L ML+ L I GLR A PGEF++
Sbjct: 58 QVLDQGIALMFKGPNSFTGEDVLELQGHGGPVVLDMLIRRILTI---PGLRTARPGEFSE 114
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI AS+E A +SAM SL G+FS I+ L+++L +LR +E +
Sbjct: 115 RAFLNDKLDLAQAEAIADLIEASSEQAVRSAMQSLQGEFSGQIHQLVEQLTHLRIYVEAA 174
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFP+E + L+ +L I+ +L ++ + ++ AL+R G+ VV+ G+PN GKSSL
Sbjct: 175 IDFPDEEVDF-LSDGRIAGDLAAIETRLAEVRRSARQGALMREGMKVVIAGRPNAGKSSL 233
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + +EVE+IG
Sbjct: 234 LNALAGRESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIG 286
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
IER W E+ +D ++ + D TD ++I P + + + NK D +G +
Sbjct: 287 IERAWSEIAQADRVLLMVDGTETDATDPAAIWPELIDRLPQEMGLTLIRNKADLTGEAVD 346
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
LSA G+ L+ L + T E ++AR+RH+ +L +A +L
Sbjct: 347 HGQAGGHPMFRLSAKTGEGVEALKQHLKACMGYQGTTEGG-FMARQRHLEALQQAALHL- 404
Query: 418 CAIKIINQSEKNFEKNL--ELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q ++ E + EL+AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 405 ------EQGKEQLEVFMAGELLAEELRLAQQALAEITGEFSSDDLLGRIFSSFCIGK 455
>gi|94676628|ref|YP_588606.1| tRNA modification GTPase TrmE [Baumannia cicadellinicola str. Hc
(Homalodisca coagulata)]
gi|166200469|sp|Q1LTV8.1|MNME_BAUCH RecName: Full=tRNA modification GTPase MnmE
gi|94219778|gb|ABF13937.1| tRNA modification GTPase TrmE [Baumannia cicadellinicola str. Hc
(Homalodisca coagulata)]
Length = 457
Score = 340 bits (872), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 200/465 (43%), Positives = 287/465 (61%), Gaps = 23/465 (4%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATP GRGG+GI+R+SG + + + K Q R A Y +F+ +N NIIDKG+ ++F
Sbjct: 12 ATPNGRGGIGIVRVSGTLTTRVAKELLGKVPIQ---RKAEYLTFYHQNGNIIDKGIALFF 68
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGED++ELHGHGGP++L +LL + + G+R+A PGEF++RAFLN K+DL
Sbjct: 69 PGPNSFTGEDILELHGHGGPVVLDLLLQRIITLP---GVRIARPGEFSERAFLNEKIDLA 125
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+A++ AA++A+ SL G FS IN L++KL +LR IE +FPEEN+ +
Sbjct: 126 QAEAIADLIDANSAQAARAAISSLQGVFSTTINDLVEKLTSLRVDIEAKINFPEENETNV 185
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L + + KI + ++R G+ +V+ G+PNVGKSS+ N+L G +VAI
Sbjct: 186 SIDKKIIANLDQAILSINKIRTAAYQGCILREGIKIVITGKPNVGKSSIINALAGHEVAI 245
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT+IAGTTRD + + I ++ I DTAG+ +++ NEVEKIGI+R W E+K +
Sbjct: 246 VTNIAGTTRDILREYIYLDGIPVSIIDTAGLCNVSH------NEVEKIGIQRAWNEIKQA 299
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D I+ V D+ K ++ DK +I NFP PV + NK D +G + NN + I
Sbjct: 300 DHILLVVDSSTTKLSEQDKLCNTLIANFPYKTPVTIIRNKADITGEKIGETLNNNYSVIT 359
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLN-EANYYLSCAIKIINQSE 427
+SA +GI +L L +I + E +LAR RH+ +L ANY L C KI
Sbjct: 360 ISALSSLGIEILLKYLTKIISLPSSTEGV-FLARRRHLEALEITANYLLQCKEKI----- 413
Query: 428 KNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+F LELIAEDL+ H LS I GK ++++LL IFS+FC+GK
Sbjct: 414 -SFPTMLELIAEDLQLAHNALSQITGKFSSHELLKKIFSRFCLGK 457
>gi|145301203|ref|YP_001144044.1| tRNA modification GTPase TrmE [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418362531|ref|ZP_12963161.1| tRNA modification GTPase TrmE [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|166200467|sp|A4STS4.1|MNME_AERS4 RecName: Full=tRNA modification GTPase MnmE
gi|142853975|gb|ABO92296.1| tRNA modification GTPase TrmE [Aeromonas salmonicida subsp.
salmonicida A449]
gi|356686224|gb|EHI50831.1| tRNA modification GTPase TrmE [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 453
Score = 340 bits (872), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 189/468 (40%), Positives = 274/468 (58%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGI+R+SG + EIV K + R+A Y F + +D+G+
Sbjct: 6 IVAQATAPGRGGVGIVRVSGPAAEQVAEIVLGKLPRV---RYAEYLPFKDEQGQPLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+ FKAP+S+TGEDV+EL GHGGP+I+ ML+ L+I GLR A PGEF++RAF+N+K
Sbjct: 63 ALLFKAPNSFTGEDVLELQGHGGPVIMDMLVRRILQIK---GLRPARPGEFSERAFMNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+E AA+SAM SL G+FS I L++ LI LR +E + DFP+E
Sbjct: 120 LDLAQAEAIADLIEASSEQAARSAMHSLQGQFSSKIQQLVESLIRLRIYVEAAIDFPDEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L I +L + + K+ AL+R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LSDGKVAGDLYAIMAELDGVRSEAKQGALLREGMKVVIAGRPNAGKSSLLNALAGR 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D +++VE+IGIER W E
Sbjct: 239 ESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRD-------TLDKVEQIGIERAWAE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D D + + + P +I + V NK D +G + +
Sbjct: 292 IEQADRVLFMVDGTTTDAIDPREIWPEFVDRLPKDIGLTVVRNKADLTGEDLAPSQELGH 351
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
A +SA +G+ LR L + E ++AR RH+ +L A L ++
Sbjct: 352 AVYRISAKTELGLPALREHLKACMGFQGNTEGG-FMARRRHLDALERAAERL-----LVA 405
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR E LS I G+ +++DLL IFS FCIGK
Sbjct: 406 KDQLEIYVAGELVAEELRLAQESLSEITGEFSSDDLLGRIFSSFCIGK 453
>gi|399006498|ref|ZP_10709022.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM17]
gi|398122015|gb|EJM11622.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM17]
Length = 456
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 187/472 (39%), Positives = 279/472 (59%), Gaps = 30/472 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKK-TKKQLKPRFATYSSFFCKNNNIIDKG 66
I +AT GRGGVGI+R+SG + + K + ++LKPR+A Y FF N ++D+G
Sbjct: 8 IAAVATAQGRGGVGIVRISGP----LASVAAKAISGRELKPRYAHYGPFFSDRNEVLDEG 63
Query: 67 LVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNN 126
+ +YF P+S+TGEDV+EL GHGGPI+L +LL C + +G RLA PGEF++RAFLN+
Sbjct: 64 IALYFPGPNSFTGEDVLELQGHGGPIVLDILLQRC----QQLGCRLARPGEFSERAFLND 119
Query: 127 KLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEE 186
KLDL Q EAI DLI AS+ AA++A+ SL G FSK ++ L ++LI LR +E + DFPEE
Sbjct: 120 KLDLAQAEAIADLIEASSAQAARNALRSLQGAFSKRVHNLTEQLIALRIYVEAAIDFPEE 179
Query: 187 NQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVG 246
+ + + + L ++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 EIDFLADGH-VLQMLDAVRDELSTVVREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAG 238
Query: 247 SDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWV 306
+ AIVT IAGTTRD + + I I+ + DTAG+ D ++VEKIG+ER
Sbjct: 239 REAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTE-------DQVEKIGVERALK 291
Query: 307 ELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNN 363
+ +D ++ V DA + D + ++ P V + NK D + + ++
Sbjct: 292 AIGEADRVLLVVDATAPEALDPFALWPEFLEQRPDPAKVTLIRNKADLTSEAIALEVSDD 351
Query: 364 IANIYLSASKRI---GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
++ +S S + G+ LLR L + QT ESS + AR RH+ +L+ A+ L
Sbjct: 352 -GHVTISLSAKAGGEGLELLREHLKACMGYEQTSESS-FSARRRHLEALHHASDALEH-- 407
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+S+ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 408 ---GRSQLTLAGAGELLAEDLRQAQQSLGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|400405624|ref|YP_006588483.1| tRNA modification GTPase TrmE [secondary endosymbiont of
Ctenarytaina eucalypti]
gi|400363987|gb|AFP85055.1| tRNA modification GTPase TrmE [secondary endosymbiont of
Ctenarytaina eucalypti]
Length = 455
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 194/475 (40%), Positives = 286/475 (60%), Gaps = 24/475 (5%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
+++ II +ATPPGRGGVGI+R+SG ++ C K +PR A Y F ++ +
Sbjct: 1 MSQMDTIIALATPPGRGGVGILRVSGA---LSAKVACMLLGKLPQPRRAEYWPFRNEDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
ID+G+ ++F PHS+TGEDV+EL HGGP+IL +LL I + G+R+A PGEF++R
Sbjct: 58 TIDQGIALFFPGPHSFTGEDVLELQAHGGPVILDLLLQ---RIVSTPGVRIAHPGEFSQR 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN K+DL Q EAIIDLI+AS+ AA+SAM SL G FS+ I+ L++ L +LR +E +
Sbjct: 115 AFLNEKIDLAQAEAIIDLIDASSVQAARSAMNSLQGAFSRRIHDLVEMLTSLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E+ + L+ L I L + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEDID-PLSDGKIEASLNAIIASLDGVRIAARQGSLLREGIKVVIAGKPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFL-FKITDTAGIPDINSKIKKNINEVEKIG 300
N+LVG +VAIVT+IAGTTRD + + I ++ + I DTAG +++ +EVEKIG
Sbjct: 234 NALVGREVAIVTTIAGTTRDVLREHIHLDGGMPLHIIDTAG-------LREAQDEVEKIG 286
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFD---KKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
I+ W E++ +D ++ + DA + D I P +P+ V NK+D +G + +
Sbjct: 287 IKHAWREIEQADHVLLIVDATITPVNESDMLWPTFIARLPPGMPMTLVRNKVDLTGERIS 346
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
I N I L A +G++LLRN L + + T + E +LAR RH+++L A +L
Sbjct: 347 IMQCNCYKLITLCAQSGVGVDLLRNHLKESVGFTGSHEGG-FLARRRHLNALENAATHLQ 405
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ F + EL+AE+LR LS I G+ + +DLL IFS FCIGK
Sbjct: 406 K-----GKEHFVFTYSTELLAEELRLAQSMLSEITGEVSADDLLGRIFSSFCIGK 455
>gi|345864669|ref|ZP_08816867.1| tRNA modification GTPase MnmE [endosymbiont of Tevnia jerichonana
(vent Tica)]
gi|345124202|gb|EGW54084.1| tRNA modification GTPase MnmE [endosymbiont of Tevnia jerichonana
(vent Tica)]
Length = 449
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 189/473 (39%), Positives = 279/473 (58%), Gaps = 25/473 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M+ I +ATPPG GGVGI+R+SG + + E + K + PR A+Y F ++
Sbjct: 1 MMQPRDTIAAVATPPGSGGVGIVRVSGADCKRVAEALAGKLPQ---PRLASYRPFHDQDG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
++ID G+++YF APHS+TGEDV+E HGG +IL +LL L++G +R A GEFT+
Sbjct: 58 SVIDTGILLYFPAPHSFTGEDVLEFQAHGGAVILDLLLQRILDLG----IRPARAGEFTE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN K+DL Q EA+ DLI A T SAA+ A +L G FS+ ++ L+++LI LR +E +
Sbjct: 114 RAFLNGKIDLAQAEAVADLIEARTVSAARLAGRTLQGVFSERVHALVEQLIELRIYVESA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + L+ N+L + ++L ++IQ L+R+G+ +V+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDF-LSDGRVANDLKTLTEQLAQLIQSANTGRLLRDGMTLVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N L G + AIVT I GTTRD + + IQI+ I DTAGI D + E+E G
Sbjct: 233 LNQLSGEERAIVTDIPGTTRDLLREQIQIDGLPLHIIDTAGIRDSEDPV-----EIE--G 285
Query: 301 IERTWVELKNSDIIIYVQDARYD-KHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNIN 359
I R E++ +D I+++ D + D +H + D+ + P +P+ V NKID + +I
Sbjct: 286 IRRARQEIEQADRILWIFDHQTDPQHLELDRATL---PAGVPLTLVRNKIDLTELAPSIK 342
Query: 360 YKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCA 419
N I + LSA G+ LLR L + ++ E ++AR RH+ +L A + A
Sbjct: 343 SNNGITELALSAKSGAGMELLRQHLKQSVGFGESSEGE-FMARRRHLDALQRA----ATA 397
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ NQ K F E++AE+LR + L+ I G+ +DLL IFS FCIGK
Sbjct: 398 LERGNQQFKQFTAG-EILAEELRQAQQALNEITGEFCADDLLGRIFSSFCIGK 449
>gi|242241426|ref|YP_002989607.1| tRNA modification GTPase TrmE [Dickeya dadantii Ech703]
gi|242133483|gb|ACS87785.1| tRNA modification GTPase TrmE [Dickeya dadantii Ech703]
Length = 453
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 187/474 (39%), Positives = 282/474 (59%), Gaps = 24/474 (5%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ + I+ ATPPGRGGVGI+R+SG ++ + V K + PR A Y F + +
Sbjct: 1 MSHSDTIVAQATPPGRGGVGILRISGAAAAAVAQAVLGKLPR---PRHADYLPFRDTDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F AP+S+TGEDV+EL GHGGP+IL +LL L +R+A PGEF++R
Sbjct: 58 VLDQGIALWFPAPNSFTGEDVLELQGHGGPVILDLLLKRIL---AQPDVRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS ++ L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSTHVHQLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + Q ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNDVIANLDAVRAQARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G D AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGRDAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D + + + P +P+ + NK D +G +
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDAVEPSAIWPEFMARLPATLPITVIRNKADTTGEPLGM 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+N I LSA G++LLR+ L + T E +LAR RH+ +L +A +L
Sbjct: 347 E-QNTHTLIRLSARTGAGVDLLRDHLKQSMGFTSNTEGG-FLARRRHLQALEQAAEHLQQ 404
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 405 GHEQLVGAYAG-----ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 453
>gi|416873277|ref|ZP_11917385.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa 152504]
gi|334845248|gb|EGM23814.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa 152504]
Length = 455
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 192/476 (40%), Positives = 270/476 (56%), Gaps = 25/476 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M I+ IAT GRGGVGI+R+SG + V + +QLK R A Y F
Sbjct: 1 MQAATETIVAIATAQGRGGVGIVRVSGPLAGQMAVAV---SGRQLKARHAHYGPFLDAGG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+ID+GL +YF P+S+TGEDV+EL GHGGP++L +L+ CLE+G R A PGEF++
Sbjct: 58 QVIDEGLSLYFPGPNSFTGEDVLELQGHGGPVVLDLLVQRCLELGA----RQARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI AS+E AA++A+ SL G+FS+ ++ L ++LI+LR +E +
Sbjct: 114 RAFLNDKLDLAQAEAIADLIEASSEQAARNALRSLQGEFSRRVHALTEQLISLRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + + + + L K++ +L + ++ + AL+R+G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDFLADGH-VLGLLEKVRTELSTVQREASQGALLRDGMTVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + VEKIG
Sbjct: 233 LNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTE-------DHVEKIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
+ER + +D ++ V DA + D + + P V + NK D S
Sbjct: 286 VERALKAIGEADRVLLVVDATAPEAADPFSLWPEFLDQRPEPGKVTLIRNKADLSTESIG 345
Query: 358 I-NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYL 416
+ + I LSA G+ LLR L + QT ES + AR RH+ +L +A L
Sbjct: 346 LEESADGHVTITLSARTGAGLELLREHLKACMGFEQTAESG-FSARRRHLEALRQAGQAL 404
Query: 417 SCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
S+ EL+AEDLR + L I G T +DLL IFS FCIGK
Sbjct: 405 KH-----GHSQLIHNGAGELLAEDLRQAQQHLGEITGAFTPDDLLGRIFSSFCIGK 455
>gi|429333991|ref|ZP_19214672.1| tRNA modification GTPase TrmE [Pseudomonas putida CSV86]
gi|428761384|gb|EKX83617.1| tRNA modification GTPase TrmE [Pseudomonas putida CSV86]
Length = 456
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 186/477 (38%), Positives = 282/477 (59%), Gaps = 26/477 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M ++ I IAT GRGGVGI+R+SG + + T ++L PR A Y F ++
Sbjct: 1 MTSRRETITAIATAQGRGGVGIVRISGPLARQAGQAI---TGRELSPRHAHYGPFRSEDG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
++D+G+ ++F P+S+TGEDV+EL GHGGP++L MLL C+++G RLA PGEF++
Sbjct: 58 LVLDEGIALFFPGPNSFTGEDVLELQGHGGPVVLDMLLQRCVQLG----CRLARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G+FS+ ++ L ++LI+LR +E +
Sbjct: 114 RAFLNDKLDLAQAEAIADLIEASSAQAARNALRSLQGEFSRRVDNLTERLISLRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + + + + L +++ L ++++ + AL+R+G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDFLADGH-VLGMLDQVRSDLASVMREAGQGALLRDGMTVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N L G + AIVT IAGTTRD + + I I+ + DTAG+ D + + VEKIG
Sbjct: 233 LNMLAGREAAIVTDIAGTTRDILREHIHIDGMPLHVVDTAGLRDTD-------DHVEKIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
+ER + +D ++ V DA + +D + + P V + NK D SG
Sbjct: 286 VERALKAIGEADRVLLVVDATAPEASDPFALWPEFLDQRPRPDKVTLIRNKADLSGESIG 345
Query: 358 I-NYKNNIANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYY 415
+ ++ I LSA + G++LLR+ L + QT+ES + AR RH+ +L +A+
Sbjct: 346 MEESEDGHVTITLSAKAPDQGLDLLRDHLKACMGYEQTVESG-FSARRRHLDALRQASAS 404
Query: 416 LSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L + + EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 405 LEH-----GREQLTLAGAGELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|190171188|gb|ACE63664.1| ThdF [Enterobacter cancerogenus]
Length = 439
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 189/458 (41%), Positives = 273/458 (59%), Gaps = 25/458 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRISGLKAREVAEAVLGKLPK---PRYADYLPFKDSDGTPLDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIAKPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L ++ K L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNEVMKDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGIERAWQEIEQA 288
Query: 312 DIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D D I P +P+ V NK D +G I+ N + I
Sbjct: 289 DRVLFMVDGTTTDAVDPADIWPDFIARLPAKLPITVVRNKADVTGETLGISDVNGHSLIR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNE-ANYYLSCAIKIINQSE 427
LSA G++ LRN L + ++E +LAR RH+ +L E AN+ + ++I
Sbjct: 349 LSARTGEGVDDLRNHLKQSMGFDTSMEGG-FLARRRHLQALEEAANHLVQGKAQLIGAWA 407
Query: 428 KNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G------ELLAEELRLAQQNLSEITGEFTSDDLLGRIF 439
>gi|190171296|gb|ACE63718.1| ThdF [Cronobacter sakazakii]
gi|190171316|gb|ACE63728.1| ThdF [Cronobacter sakazakii]
gi|190171318|gb|ACE63729.1| ThdF [Cronobacter sakazakii]
gi|190171328|gb|ACE63734.1| ThdF [Cronobacter sakazakii]
gi|190171344|gb|ACE63742.1| ThdF [Cronobacter sakazakii]
Length = 439
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 184/457 (40%), Positives = 274/457 (59%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SG+ + + V K K R+A Y F + +D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRVSGQQARDVAQAVLGKLPK---ARYADYLPFKDADGTALDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTLS---GVRIARPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWQEIEQA 288
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D TD + I P +P+ V NK D +G Q I+ N + I
Sbjct: 289 DRVLFMVDGTTTDATDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGISEVNGHSLIR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA G+++LRN L + ++E +LAR RH+ +L +A +L + +
Sbjct: 349 LSARTNEGVDVLRNHLKQSMGFDTSMEGG-FLARRRHLQALEDAANHLQQGKAQLLGAWA 407
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G-----ELLAEELRLAQQALSEITGEFTSDDLLGRIF 439
>gi|160872053|ref|ZP_02062185.1| tRNA modification GTPase TrmE [Rickettsiella grylli]
gi|159120852|gb|EDP46190.1| tRNA modification GTPase TrmE [Rickettsiella grylli]
Length = 462
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 202/473 (42%), Positives = 277/473 (58%), Gaps = 26/473 (5%)
Query: 5 NSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIID 64
N I+ +ATP GRGG+ +IR+SG + I + ++ ++ R+A Y SF K+ ++ID
Sbjct: 11 NETIVALATPQGRGGIAVIRISGSTIKRIANQLLRRAPRK---RYAEYCSFLAKDGSLID 67
Query: 65 KGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFL 124
+GL +YF APHS+TGEDV+EL HGGPI++ LL L++G RLA PGEFT+RAFL
Sbjct: 68 QGLALYFPAPHSFTGEDVLELQCHGGPIVVDCLLKRVLQLGA----RLARPGEFTERAFL 123
Query: 125 NNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFP 184
N KLDL+Q EAI DLINA +E AA++AM SL G FS IN + D +I LR +E S DF
Sbjct: 124 NAKLDLVQAEAIADLINAESEQAARAAMRSLQGDFSLRINQIRDSIIELRMWLEASIDFS 183
Query: 185 EENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSL 244
+EN + L D L I + I K+ L++ G+N+ ++G PN GKSSL N L
Sbjct: 184 DENID-CLKDGDVLTRLNSILTDIQNIKNLAKQGTLLQEGINLAIVGPPNAGKSSLLNRL 242
Query: 245 VGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304
+ +IVTS AGTTRD I + IQI L I DTAG ++ I+E+EK GI+RT
Sbjct: 243 SLKEASIVTSFAGTTRDVIREKIQIEGLLIHIVDTAG-------LRITIDEIEKEGIKRT 295
Query: 305 WVELKNSDIIIYVQDARYDKHTDF-----DKKIIKNFPMNIPVIYVWNKIDYSGHQKNIN 359
E+ +++I++V D +H D + +KN ++ ++ + NKID S I
Sbjct: 296 LAEIAKANLILWVVDHNTTRHEDLIFWKEQELFLKNIFLDNRILIIRNKIDLSQENARIE 355
Query: 360 YKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCA 419
+ N I LSA G +LL N L + T + ES+ + AR RH+ +L+ L+ A
Sbjct: 356 KELNFNVIKLSAKTGEGFSLLYNYLKNYAGYTNSSESN-FSARRRHLDALSHTQMTLNKA 414
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+K I E F ELIAEDL L I G TT+DLL IFS FCIGK
Sbjct: 415 LKKI--KENTFS---ELIAEDLAMAQNFLGEITGHFTTHDLLGKIFSNFCIGK 462
>gi|289628219|ref|ZP_06461173.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. aesculi
str. NCPPB 3681]
gi|289649109|ref|ZP_06480452.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. aesculi
str. 2250]
gi|422579877|ref|ZP_16655394.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|330870070|gb|EGH04779.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. aesculi
str. 0893_23]
Length = 456
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 192/470 (40%), Positives = 274/470 (58%), Gaps = 26/470 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT GRGGVGI+R+SG E + +T K PRFA Y F + +D+G+
Sbjct: 8 IAAIATAQGRGGVGIVRVSGPLASKAAEAIIGRTPK---PRFAHYGPFVDEAGQTLDEGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P+S+TGEDV+EL GHGGPI+L MLL CL++G RLA PGEF++RAFLN+K
Sbjct: 65 ALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS----RLARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+ A ++A+ SL G FS+ ++ L +KLI+LR +E + DFPEE
Sbjct: 121 LDLAQAEAIADLIEASSAQAVRNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + + N L ++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDFLADGH-VLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ + DTAG+ D ++VE IG++R
Sbjct: 240 EAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQ-------DQVEMIGVQRALKA 292
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYK-NN 363
+ +D I+ V DA + D + ++ P V + NK D SG ++ +
Sbjct: 293 IGEADRILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKADLSGDPIDLQISVDG 352
Query: 364 IANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKI 422
I LSA S G+ LLR L + QT ESS + AR RH+ +L A+ L
Sbjct: 353 HVTISLSARSGGEGLELLREHLKACMGYEQTSESS-FSARRRHLEALRHASDSLEH---- 407
Query: 423 INQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 408 -GRAQLTLAGAGELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|423204664|ref|ZP_17191220.1| tRNA modification GTPase mnmE [Aeromonas veronii AMC34]
gi|404625988|gb|EKB22799.1| tRNA modification GTPase mnmE [Aeromonas veronii AMC34]
Length = 453
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 188/468 (40%), Positives = 272/468 (58%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGI+R+SG + IV K + R+A Y F + ++D+G+
Sbjct: 6 IVAQATAPGRGGVGIVRVSGPAAEQVAGIVLGKLPRV---RYAEYLPFRDEQGQVLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+ FKAP+S+TGEDV+EL GHGGP+I+ ML+ L+I G+R A PGEF++RAF+N+K
Sbjct: 63 ALLFKAPNSFTGEDVLELQGHGGPVIMDMLIRRILKID---GIRPARPGEFSERAFINDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+E AA+SAM SL G+FS I L++ LI LR +E + DFP+E
Sbjct: 120 LDLAQAEAIADLIEASSEQAARSAMHSLQGQFSSKIQQLVESLIRLRIYVEAAIDFPDEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L I +L + + K+ AL+R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LSDGKVAGDLYSIMSELDDVRGEAKQGALLREGMKVVIAGRPNAGKSSLLNALAGR 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D K VE+IGIER W E
Sbjct: 239 ESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTQDK-------VEQIGIERAWAE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D D + + + P NI + + NK D +G + +
Sbjct: 292 IEQADRVLFMVDGTTTDAVDPREIWPEFVDRLPKNIGLTVIRNKADLTGEDLAPSQEQGH 351
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
A +SA +G+ LR L + E ++AR RH+ +L A L ++
Sbjct: 352 AVYRISAKTELGLPALREHLKACMGFQGNTEGG-FMARRRHLDALERAAERL-----LVA 405
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR E LS I G+ +++DLL IFS FCIGK
Sbjct: 406 KEQLEVFVAGELVAEELRLAQESLSEITGEFSSDDLLGRIFSSFCIGK 453
>gi|90194078|gb|ABD92600.1| ThdF [Phocoenobacter uteri]
Length = 436
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 193/456 (42%), Positives = 280/456 (61%), Gaps = 23/456 (5%)
Query: 13 TPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFK 72
TP GRGGVGI+R+SG ++ + V KT LKPR A Y F + + ID+G+ ++FK
Sbjct: 1 TPIGRGGVGILRISGPLAETVAQEVLGKT---LKPRMANYLPFKDIDGSTIDQGIALFFK 57
Query: 73 APHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQ 132
AP+S+TGEDV+EL GHGG IIL +LL L++ GLR+A GEF+++AFLN+KLDL Q
Sbjct: 58 APNSFTGEDVLELQGHGGQIILDILLKRILQVK---GLRIARAGEFSEQAFLNDKLDLAQ 114
Query: 133 VEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELIL 192
EAI DLI+A++E AA+SA+ SL G+FS I+ L+D +I LRT +E S DFP+E + L
Sbjct: 115 AEAIADLIDATSEQAARSALKSLQGEFSNKIHQLVDDVIYLRTYVEASIDFPDEEIDF-L 173
Query: 193 NKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIV 252
N+L +I L + ++ K+ ++IR G+ VV+ G+PN GKSSL N+L G D AIV
Sbjct: 174 ADGKIENKLNQIIASLDNVRKEAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGRDAAIV 233
Query: 253 TSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSD 312
T+IAGTTRD + + I I+ I DTAG+ D + +EVE+IGIER W E++ +D
Sbjct: 234 TNIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGIERAWGEIEQAD 286
Query: 313 IIIYVQDARYDKHTDFD---KKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYL 369
++ + D+ + + + P NIPV + NK+D SG ++ NN I L
Sbjct: 287 HVLLMIDSTESSTENIQTEWQDFLTRLPENIPVTVIRNKVDLSGEKEGFEKLNNFDLIRL 346
Query: 370 SASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEKN 429
SA ++G+ LLR L + + E ++AR RH+ +L +A +L+ + +
Sbjct: 347 SAQTKVGVELLREHLKQSMGYQSSTEGG-FIARRRHLVALEKAAEHLANGHTQLTEFYAG 405
Query: 430 FEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR LS I G+ T++DLL NIF
Sbjct: 406 -----ELLAEELRMTQNALSEITGEFTSDDLLGNIF 436
>gi|90194072|gb|ABD92597.1| ThdF [Volucribacter psittacicida]
Length = 436
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 191/456 (41%), Positives = 282/456 (61%), Gaps = 23/456 (5%)
Query: 13 TPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFK 72
T GRGG+GI+R+SG ++ + V K K PR A Y F + I+D+G+ +YFK
Sbjct: 1 TAIGRGGIGILRVSGPQASNVAQAVLGKCPK---PRMADYLPFKDADGTILDQGIALYFK 57
Query: 73 APHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQ 132
APHS+TGEDV+EL GHGG ++L +LL L++ +RLA PGEF+++AFLN+KLDL Q
Sbjct: 58 APHSFTGEDVLELQGHGGQVVLDLLLKRILQLDH---IRLARPGEFSEQAFLNDKLDLAQ 114
Query: 133 VEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELIL 192
EAI DLI+A++E AA+SA+ SL G+FS IN L+D+LI LRT +E + DFP+E + L
Sbjct: 115 AEAIADLIDANSEQAARSALKSLQGEFSHKINQLVDQLIYLRTYVEAAIDFPDEEIDF-L 173
Query: 193 NKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIV 252
L +I ++L ++ Q+ K+ +L+R G+ VV+ G+PN GKSSL N+L G + AIV
Sbjct: 174 ADGKIEGHLQQIIQQLNQVQQEAKQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIV 233
Query: 253 TSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSD 312
T IAGTTRD + + I I+ I DTAG+ D +EVEKIGI R W E+K +D
Sbjct: 234 TDIAGTTRDILREHIHIDGMPLHIIDTAGLRDAT-------DEVEKIGIHRAWNEIKQAD 286
Query: 313 IIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYL 369
+I+ + D+ + + +K + ++ P +IPV + NK+D +G + I + + I L
Sbjct: 287 MILLMLDSTAPDNQNMEKVRSEFLQKLPPHIPVTIIRNKVDLTGETEGIQQQQDYTVIQL 346
Query: 370 SASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEKN 429
SA + G++LLR L + E +LAR RH+ +LN+A +L+ + Q
Sbjct: 347 SAKTQYGVDLLREHLKQAMGYQSGTEGG-FLARRRHLEALNKAAQHLAQGHIQLTQYFAG 405
Query: 430 FEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR +LS I G+ T++DLL +IF
Sbjct: 406 -----ELLAEELRLAQLQLSEITGQFTSDDLLTHIF 436
>gi|190171270|gb|ACE63705.1| ThdF [Cronobacter genomosp. 1]
gi|190171276|gb|ACE63708.1| ThdF [Cronobacter malonaticus]
gi|190171298|gb|ACE63719.1| ThdF [Cronobacter sakazakii]
gi|190171300|gb|ACE63720.1| ThdF [Cronobacter sakazakii]
gi|190171302|gb|ACE63721.1| ThdF [Cronobacter sakazakii]
gi|190171306|gb|ACE63723.1| ThdF [Cronobacter sakazakii]
gi|190171308|gb|ACE63724.1| ThdF [Cronobacter sakazakii]
gi|190171310|gb|ACE63725.1| ThdF [Cronobacter sakazakii]
gi|190171320|gb|ACE63730.1| ThdF [Cronobacter sakazakii]
gi|190171324|gb|ACE63732.1| ThdF [Cronobacter sakazakii]
gi|190171330|gb|ACE63735.1| ThdF [Cronobacter sakazakii]
gi|190171336|gb|ACE63738.1| ThdF [Cronobacter sakazakii]
gi|190171338|gb|ACE63739.1| ThdF [Cronobacter sakazakii]
gi|190171340|gb|ACE63740.1| ThdF [Cronobacter sakazakii]
gi|190171342|gb|ACE63741.1| ThdF [Cronobacter sakazakii]
Length = 439
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 184/457 (40%), Positives = 274/457 (59%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SG+ + + V K K R+A Y F + +D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRVSGQQARDVAQAVLGKLPKA---RYADYLPFKDADGTALDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWQEIEQA 288
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D TD + I P +P+ V NK D +G Q I+ N + I
Sbjct: 289 DRVLFMVDGTTTDATDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGISEVNGHSLIR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA G+++LRN L + ++E +LAR RH+ +L +A +L + +
Sbjct: 349 LSARTNEGVDVLRNHLKQSMGFDTSMEGG-FLARRRHLQALEDAANHLQQGKAQLLGAWA 407
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G-----ELLAEELRLAQQALSEITGEFTSDDLLGRIF 439
>gi|90194132|gb|ABD92627.1| ThdF [Mannheimia ruminalis]
Length = 436
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 191/466 (40%), Positives = 284/466 (60%), Gaps = 43/466 (9%)
Query: 13 TPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFK 72
TP GRGGVGI+R+SG ++ + V KT L PR A Y F ++ ++D+G+ ++FK
Sbjct: 1 TPIGRGGVGILRVSGPLAETVAQAVLGKT---LPPRIANYLPFKDEDGTVLDQGIALFFK 57
Query: 73 APHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQ 132
AP+S+TGEDV+EL GHGG +IL +LL L++ GLR+A GEF+++AFLN+KLDL Q
Sbjct: 58 APNSFTGEDVLELQGHGGQVILDLLLKRILQVK---GLRIARAGEFSEQAFLNDKLDLAQ 114
Query: 133 VEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELIL 192
EAI DLI+A++E AA+SA+ SL G+FS IN L+D +I LRT +E + DFP+E + +
Sbjct: 115 AEAIADLIDATSEQAARSALKSLQGEFSHKINELVDSVIYLRTYVEAAIDFPDEEIDFLA 174
Query: 193 NKNDFFNELIKIKKKLLKIIQQ-------GKKRALIRNGLNVVLIGQPNVGKSSLFNSLV 245
+ KI+ KL +II Q K+ +++R G+ VV+ G+PN GKSSL N+L
Sbjct: 175 DG--------KIEAKLNEIIAQLDGVRREAKQGSILREGMKVVIAGRPNAGKSSLLNALA 226
Query: 246 GSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTW 305
G + AIVT+IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI+R W
Sbjct: 227 GREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGIQRAW 279
Query: 306 VELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKN 362
E+ +D ++ + D+ + F + + + P N+PV + NK+D SG + + +
Sbjct: 280 EEIAQADHVLLMIDSTEQQADQFRQEWAEFLAKLPANMPVTVIRNKVDLSGEPEGLIQVD 339
Query: 363 NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP---YLARERHIHSLNEANYYLSCA 419
+ I LSA ++G++LLR L +K+ +SS +LAR RH+ +L A +L
Sbjct: 340 DFTMIRLSAQTKVGVDLLREHL----KKSMGYQSSTEGGFLARRRHLQALETAAEHLERG 395
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
+ Q EL+AE+LR LS I G+ T++DLL NIF
Sbjct: 396 HIQLTQFLAG-----ELLAEELRMVQNALSEITGQFTSDDLLGNIF 436
>gi|190171196|gb|ACE63668.1| ThdF [Enterobacter helveticus]
gi|190171198|gb|ACE63669.1| ThdF [Enterobacter helveticus]
gi|190171200|gb|ACE63670.1| ThdF [Enterobacter helveticus]
gi|190171202|gb|ACE63671.1| ThdF [Enterobacter helveticus]
gi|190171204|gb|ACE63672.1| ThdF [Enterobacter helveticus]
gi|190171206|gb|ACE63673.1| ThdF [Enterobacter helveticus]
gi|190171208|gb|ACE63674.1| ThdF [Enterobacter helveticus]
gi|190171210|gb|ACE63675.1| ThdF [Enterobacter helveticus]
gi|190171212|gb|ACE63676.1| ThdF [Enterobacter helveticus]
gi|190171216|gb|ACE63678.1| ThdF [Enterobacter helveticus]
Length = 439
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 185/457 (40%), Positives = 272/457 (59%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SGK + + V K K PR+A Y F +N +D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRISGKQARDVAQAVLGKLPK---PRYADYLPFKDSDNTPLDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L I G+R+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGVRIARPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNTVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWKEIEQA 288
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D D + + P N+P+ V NK D +G ++ N + I
Sbjct: 289 DRVLFMVDGTTTDAVDPAQIWPDFMARLPQNLPITVVRNKADVTGEPAGLSEVNGHSLIR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA G+ +LR+ L + +E +LAR RH+ +L EA +L + +
Sbjct: 349 LSARSGEGVEVLRDHLKSSMGFDTNMEGG-FLARRRHLQALEEAANHLQQGKAQLLGAWA 407
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G-----ELLAEELRLAQQSLSEITGEFTSDDLLGRIF 439
>gi|190171334|gb|ACE63737.1| ThdF [Cronobacter sakazakii]
Length = 440
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 184/457 (40%), Positives = 274/457 (59%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SG+ + + V K K R+A Y F + +D+G+ ++F
Sbjct: 4 ATPPGRGGVGILRVSGQQARDVAQAVLGKLPKA---RYADYLPFKDADGTALDQGIALWF 60
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++RAFLN+KLDL
Sbjct: 61 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSERAFLNDKLDLA 117
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 118 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEIDF- 176
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 177 LSDGKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 236
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E++ +
Sbjct: 237 VTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWQEIEQA 289
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D TD + I P +P+ V NK D +G Q I+ N + I
Sbjct: 290 DRVLFMVDGTTTDATDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGISEVNGHSLIR 349
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA G+++LRN L + ++E +LAR RH+ +L +A +L + +
Sbjct: 350 LSARTNEGVDVLRNHLKQSMGFDTSMEGG-FLARRRHLQALEDAANHLQQGKAQLLGAWA 408
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 409 G-----ELLAEELRLAQQALSEITGEFTSDDLLGRIF 440
>gi|333902665|ref|YP_004476538.1| tRNA modification GTPase mnmE [Pseudomonas fulva 12-X]
gi|333117930|gb|AEF24444.1| tRNA modification GTPase mnmE [Pseudomonas fulva 12-X]
Length = 455
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 186/476 (39%), Positives = 278/476 (58%), Gaps = 25/476 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M I +AT GRGGVGI+R+SG ++ I + KPR A + ++
Sbjct: 1 MSAPRETIAAVATAQGRGGVGIVRVSGPR-ARMIAITLSGIEP--KPRHAHHGAWHDDAG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+ID+GL+++F PHS+TGEDV+EL GHGGP++L MLL CLE+G R A PGEF++
Sbjct: 58 EVIDEGLLLFFPGPHSFTGEDVLELQGHGGPVVLDMLLQLCLELGA----RQARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G+FS+ ++ L ++LI LR +E +
Sbjct: 114 RAFLNDKLDLAQAEAIADLIEASSAEAARNAVRSLQGEFSRRVHELTERLIALRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + + + + + L ++++L ++++ + AL+R+G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDFLADGH-VLSLLEGVREQLSTVLREAGQGALLRDGMTVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D ++VE+IG
Sbjct: 233 LNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTE-------DQVERIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
+ER + +D ++ V D+ + D + ++ P V + NK D SG
Sbjct: 286 VERALKAIGEADRVLLVVDSTAPEAADPFALWPEFLQQRPDMARVTLIRNKADLSGELVA 345
Query: 358 I-NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYL 416
+ N + A + LSA G+ LLR L + QT ES + AR RH+ +L++A +L
Sbjct: 346 LHNAADGQATLALSAKSSEGLELLREHLKACMGFQQTAESG-FSARRRHLDALHQAQRHL 404
Query: 417 SCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 405 DH-----GHAQLTLAGAGELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 455
>gi|146295079|ref|YP_001185503.1| tRNA modification GTPase TrmE [Shewanella putrefaciens CN-32]
gi|166991116|sp|A4YCM1.1|MNME_SHEPC RecName: Full=tRNA modification GTPase MnmE
gi|145566769|gb|ABP77704.1| tRNA modification GTPase trmE [Shewanella putrefaciens CN-32]
Length = 453
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 191/471 (40%), Positives = 278/471 (59%), Gaps = 29/471 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG + V K R+A Y F +ID+G+
Sbjct: 6 IVAQATAPGRGGVGIIRISGDKATDVAMAVLGHLPK---TRYADYCDFKNATGQVIDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++FK P+S+TGEDV+EL GHGG I+L ML+ LE+ G+R+A PGEF+++AF+N+K
Sbjct: 63 ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVLEVE---GIRIAKPGEFSEQAFMNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AAKSA+ SL G+FSK ++ L+D++ NLR +E + DFP+E
Sbjct: 120 LDLTQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPDEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ N L KI KL + K+ ++IR G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 VDF-LSDGKIANALYKIIDKLSTVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D + VE+IGIER W E
Sbjct: 239 ESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRD-------TTDTVEQIGIERAWNE 291
Query: 308 LKNSDIIIYVQDA----RYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNN 363
+ ++D ++++ D D H D I P N+ V + NK D +G ++ +
Sbjct: 292 INSADRVLFMVDGTTTDAVDPH-DIWPDFINRLPANLGVTVIRNKADLTGENLDMTEEKG 350
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
+ +SA +G++ L+ L L+ +E ++AR RH+ +L+ A +L
Sbjct: 351 YSVYRISAKTGLGVDELKLHLKSLMGYQSNLEGG-FIARRRHLEALDVAASHLQLG---- 405
Query: 424 NQSEKNFEKNL--ELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ E L EL+AE+LR LS I G+ T++DLL IFS FCIGK
Sbjct: 406 ---KEQLEVYLAGELLAEELRMAQLALSEITGRFTSDDLLGKIFSSFCIGK 453
>gi|120600873|ref|YP_965447.1| tRNA modification GTPase TrmE [Shewanella sp. W3-18-1]
gi|386315967|ref|YP_006012132.1| tRNA modification GTPase TrmE [Shewanella putrefaciens 200]
gi|166991118|sp|A1RQE8.1|MNME_SHESW RecName: Full=tRNA modification GTPase MnmE
gi|120560966|gb|ABM26893.1| tRNA modification GTPase trmE [Shewanella sp. W3-18-1]
gi|319428592|gb|ADV56666.1| tRNA modification GTPase TrmE [Shewanella putrefaciens 200]
Length = 453
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 191/471 (40%), Positives = 278/471 (59%), Gaps = 29/471 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG + V K R+A Y F +ID+G+
Sbjct: 6 IVAQATAPGRGGVGIIRISGDKATDVAMAVLGHLPK---TRYADYCDFKNATGQVIDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++FK P+S+TGEDV+EL GHGG I+L ML+ LE+ G+R+A PGEF+++AF+N+K
Sbjct: 63 ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVLEVE---GIRIAKPGEFSEQAFMNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AAKSA+ SL G+FSK ++ L+D++ NLR +E + DFP+E
Sbjct: 120 LDLTQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPDEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ N L KI KL + K+ ++IR G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 VDF-LSDGKIANALYKIIDKLSTVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D + VE+IGIER W E
Sbjct: 239 ESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRD-------TTDTVEQIGIERAWNE 291
Query: 308 LKNSDIIIYVQDA----RYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNN 363
+ ++D ++++ D D H D I P N+ V + NK D +G ++ +
Sbjct: 292 INSADRVLFMVDGTTTDAVDPH-DIWPDFINRLPANLGVTVIRNKADLTGENLDMTEEKG 350
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
+ +SA +G++ L+ L L+ +E ++AR RH+ +L+ A +L
Sbjct: 351 YSVYRISAKTGLGVDELKLHLKSLMGYQSNLEGG-FIARRRHLEALDVAASHLQLG---- 405
Query: 424 NQSEKNFEKNL--ELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ E L EL+AE+LR LS I G+ T++DLL IFS FCIGK
Sbjct: 406 ---KEQLEVYLAGELLAEELRMAQIALSEITGRFTSDDLLGKIFSSFCIGK 453
>gi|398801804|ref|ZP_10561041.1| tRNA modification GTPase TrmE [Pantoea sp. GM01]
gi|398091240|gb|EJL81689.1| tRNA modification GTPase TrmE [Pantoea sp. GM01]
Length = 454
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 190/478 (39%), Positives = 280/478 (58%), Gaps = 31/478 (6%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ + I+ ATPPGRGGVGI+R+SG + + V K K PR+A Y F + +
Sbjct: 1 MSHSDTIVAQATPPGRGGVGILRISGAKAADVAQAVLGKLPK---PRYADYLPFSDVDGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL + + GLR+A PGEF++R
Sbjct: 58 VLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIVAL---PGLRIAQPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SA+ SL G FS IN L++ L +LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSLRINALVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNVVIGDLNGVRAEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHT-------DFDKKIIKNFPMNIPVIYVWNKIDYSGH 354
ER W E++ +D ++++ D T DF + P +P+ V NK D +G
Sbjct: 287 ERAWQEIEQADRVLFMVDGTTTDATQAAAIWPDF----VARLPDALPITVVRNKADMTGE 342
Query: 355 QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ N + I LSA G+ LR+ L + +E +LAR RH+ +L A
Sbjct: 343 VLGLTEVNGHSLIRLSARTGEGVEALRDHLKQSMGFAGNMEGG-FLARRRHLQALELAAT 401
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L + + EL+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 402 HLEQGKHQLLGAWAG-----ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454
>gi|383760548|ref|YP_005439534.1| tRNA modification GTPase TrmE [Rubrivivax gelatinosus IL144]
gi|381381218|dbj|BAL98035.1| tRNA modification GTPase TrmE [Rubrivivax gelatinosus IL144]
Length = 454
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 194/471 (41%), Positives = 275/471 (58%), Gaps = 30/471 (6%)
Query: 7 PIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKG 66
PI +AT GRG VGI+R SG +L +V+ + + L PR AT F + +++D+G
Sbjct: 9 PIAAVATAAGRGAVGIVRASGPDLAPLVQALFGRA---LAPRAATLLPFTAADGSVLDRG 65
Query: 67 LVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNN 126
L I+F APHSYTGEDV+EL HGGP++L +LL+ LE G IGLRLA GEFT+RAFLN+
Sbjct: 66 LAIHFPAPHSYTGEDVLELQAHGGPVLLQLLLARVLEAGAGIGLRLARAGEFTERAFLND 125
Query: 127 KLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEE 186
K+DL Q EA+ DLI+ASTE+AA+SA SL G FS I+ L +++ LRTL+E + DFPEE
Sbjct: 126 KIDLAQAEAVADLIDASTEAAARSAARSLDGAFSAEIHTLAGRIVELRTLVEATLDFPEE 185
Query: 187 NQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVG 246
+ L K L I+ + + + ++ AL+R G+ VV+ GQPNVGKSSL N+L G
Sbjct: 186 EIDF-LEKARAHERLGAIEAAIGAALARARQGALLREGMRVVIAGQPNVGKSSLLNALAG 244
Query: 247 SDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWV 306
+++AIVT I GTTRD++ +TIQI + DTAG+ + +EVE+IGI R+W
Sbjct: 245 AELAIVTPIPGTTRDRVAETIQIEGVPLHVVDTAGLRE------HAADEVERIGIGRSWE 298
Query: 307 ELKNSDIIIYVQD--ARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
+ +D +++V D R D + + I V++V NK +
Sbjct: 299 AIAGADAVLFVHDLTRRGDAGYEAAEAEIATRLEGADVLHVHNK-------ADAAAPAAD 351
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP---YLARERHIHSLNEANYYLSCAIK 421
+ LSA G+ LR LL + ++ P ++AR RH+ +L +L A
Sbjct: 352 DGVVLSAKAGTGLETLRRELL----RRAGWQAQPDGVFIARARHVDALQRTLAHLHLAQA 407
Query: 422 IINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + L+L+AE+LR H+ L I G+ T DLL IF +FCIGK
Sbjct: 408 HAAQR----DAALDLLAEELRLAHQALGEITGEFGTEDLLGEIFGRFCIGK 454
>gi|411011439|ref|ZP_11387768.1| tRNA modification GTPase TrmE [Aeromonas aquariorum AAK1]
Length = 453
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 189/468 (40%), Positives = 270/468 (57%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGI+R+SG + EIV K + R+A Y F + +D+G+
Sbjct: 6 IVAQATAPGRGGVGIVRVSGPAAEQVAEIVLGKLPRV---RYAEYLPFRDEQGQPLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+ FKAP+S+TGEDV+EL GHGGP+I+ ML+ L+I GLR A PGEF++RAF+N+K
Sbjct: 63 ALLFKAPNSFTGEDVLELQGHGGPVIMDMLVRRILQIK---GLRPARPGEFSERAFMNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+E AA+SAM SL G+FS I L++ L LR +E + DFP+E
Sbjct: 120 LDLAQAEAIADLIEASSEQAARSAMHSLQGQFSGKIQQLVESLTRLRIYVEAAIDFPDEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L I +L + + K+ AL+R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LSDGKVAGDLYAIMDELDAVRGEAKQGALLREGMKVVIAGRPNAGKSSLLNALAGR 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D K VE+IGIER W E
Sbjct: 239 ESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTQDK-------VEQIGIERAWAE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D D + + + P I + V NK D +G + +
Sbjct: 292 IEQADRVLFMVDGTTTAAVDPREIWPEFVDRLPKKIGLTVVRNKADLTGEDLAPSQEQGH 351
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
A +SA +G+ LR L + E ++AR RH+ +L A L ++
Sbjct: 352 AVYRISAKTALGLPALREHLKACMGFQGNTEGG-FMARRRHLDALERAAERL-----LVA 405
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR E LS I G+ +++DLL IFS FCIGK
Sbjct: 406 KEQLEVFVAGELVAEELRLAQESLSEITGEFSSDDLLGRIFSSFCIGK 453
>gi|190171272|gb|ACE63706.1| ThdF [Cronobacter malonaticus]
gi|190171274|gb|ACE63707.1| ThdF [Cronobacter malonaticus]
gi|190171278|gb|ACE63709.1| ThdF [Cronobacter malonaticus]
gi|190171280|gb|ACE63710.1| ThdF [Cronobacter malonaticus]
gi|190171282|gb|ACE63711.1| ThdF [Cronobacter malonaticus]
gi|190171284|gb|ACE63712.1| ThdF [Cronobacter malonaticus]
Length = 439
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 183/457 (40%), Positives = 274/457 (59%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SG+ + + V K K R+A Y F + +D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRVSGQQARDVAQAVLGKLPKA---RYADYLPFKDADGTALDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWQEIEQA 288
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D TD + I P +P+ V NK D +G Q ++ N + I
Sbjct: 289 DRVLFMVDGTTTDATDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGLSEVNGHSLIR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA G+++LRN L + ++E +LAR RH+ +L +A +L + +
Sbjct: 349 LSARTNEGVDVLRNHLKQSMGFDTSMEGG-FLARRRHLQALEDAANHLQQGKAQLLGAWA 407
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G-----ELLAEELRLAQQALSEITGEFTSDDLLGRIF 439
>gi|169635760|emb|CAQ16333.1| t-RNA modification GTPase protein [Halomonas cupida]
Length = 458
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 186/481 (38%), Positives = 284/481 (59%), Gaps = 32/481 (6%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKK-TKKQLKPRFATYSSFFCKN 59
M I +AT G GGVGI+R+SG + I K ++++LKPR+A Y F+ +N
Sbjct: 1 MSVAAETIAAVATAQGPGGVGIVRISGP----LASIAAKAFSERELKPRYAHYGPFYGEN 56
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFT 119
++D+G+ +YF P+S+TGEDV+EL GHGGPI+L MLL C+++G RLA PGEF+
Sbjct: 57 REVLDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCIQLG----CRLARPGEFS 112
Query: 120 KRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEF 179
+RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G FS+ ++ L ++LI LR +E
Sbjct: 113 ERAFLNDKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVHNLTEQLIGLRIYVEA 172
Query: 180 SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
+ DFPEE + + + + L ++++L ++++ + AL+R+G+ VV+ G+PN GKSS
Sbjct: 173 AIDFPEEEIDFLADGH-VLGMLDTVRQELSTVMREAGQGALLRDGMTVVIAGRPNAGKSS 231
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L ++L G + AIVT IAGTTRD + + I I+ + DTAG+ D + ++VEKI
Sbjct: 232 LLDALAGREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTD-------DQVEKI 284
Query: 300 GIERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356
G++R + +D ++ V DA + D + ++ P V + NK D +G
Sbjct: 285 GVQRALKAIGEADRVLLVVDATAPEADDPFALWPEFLQQRPDPAKVTLIRNKADLTGEDI 344
Query: 357 NINYKNNIANIYLSASKRI-----GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNE 411
+ ++ ++ +S S R G+ LLR+ L + QT ESS + AR RH+ +L
Sbjct: 345 RLQVCDD-GHVTISLSARSTDAGDGLELLRDHLKACMGYEQTSESS-FSARRRHLEALRH 402
Query: 412 ANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIG 471
A+ L +++ EL+AEDLR L I G +++DLL IFS FCIG
Sbjct: 403 ASDALEH-----GRAQLTLAGAGELLAEDLRQAQHSLGEITGAFSSDDLLGRIFSSFCIG 457
Query: 472 K 472
K
Sbjct: 458 K 458
>gi|190171322|gb|ACE63731.1| ThdF [Cronobacter sakazakii]
gi|190171326|gb|ACE63733.1| ThdF [Cronobacter sakazakii]
Length = 439
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 184/457 (40%), Positives = 275/457 (60%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SG+ ++ + V K K R+A Y F + +D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRVSGQQARNVAQAVLGKLPKA---RYADYLPFKDADGTALDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWQEIEQA 288
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D TD + I P +P+ V NK D +G Q I+ N + I
Sbjct: 289 DRVLFMVDGTTTDATDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGISEVNGHSLIR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA G+++LRN L + ++E +LAR RH+ +L +A +L + +
Sbjct: 349 LSARTNEGVDVLRNHLKQSMGFDTSMEGG-FLARRRHLQALEDAANHLQQGKAQLLGAWA 407
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G-----ELLAEELRLAQQALSEITGEFTSDDLLGRIF 439
>gi|226947216|ref|YP_002802289.1| tRNA modification GTPase TrmE [Azotobacter vinelandii DJ]
gi|226722143|gb|ACO81314.1| tRNA modification GTPase TrmE [Azotobacter vinelandii DJ]
Length = 455
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 190/478 (39%), Positives = 280/478 (58%), Gaps = 29/478 (6%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M + I IAT GRGGVGI+R+SG +I +C + L+PR A Y +F
Sbjct: 1 MHSARETIAAIATAQGRGGVGIVRVSGPLAGTIATGICARP---LRPRHAHYGAFRDGTG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
++D+G+ ++F PHS+TGEDV+EL GHGGP++L +LL CLE+G R+A PGEF++
Sbjct: 58 QVLDEGIALFFPGPHSFTGEDVLELQGHGGPLVLDLLLRRCLELGA----RMARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
+AFLN+KLDL Q EAI DLI AS+ AA++A+ SL G+FS+ +N L ++LI LR +E +
Sbjct: 114 QAFLNDKLDLAQAEAIADLIEASSAQAARNALRSLQGEFSRRVNALGERLIELRLYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + + + L ++ L ++++ + AL+R+G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDFLADGR-VLELLDGLRADLSTVLREAGQGALLRDGMTVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D + VE+IG
Sbjct: 233 LNALAGRESAIVTDIAGTTRDLLREHIHIDGMPLHIVDTAGLRDTEDR-------VERIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
+ER ++ +D ++ V DA + D + + P V + NKID +G +
Sbjct: 286 VERALQAIREADRVLLVIDASAPEAADPFALWPEFLDLPPEPGKVTLIRNKIDLTG-EPI 344
Query: 358 INYKNNIANIYLSASKRI--GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYY 415
++ + + ++ + S R G++LLR L + QTIESS + AR RH+ +L A
Sbjct: 345 VHEQGSDGHVVIGLSARTGEGLDLLRKHLKACMGFEQTIESS-FSARCRHLEALRRAANS 403
Query: 416 LSCA-IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L ++I EL+AEDLR + L I G T++DLL IFS FCIGK
Sbjct: 404 LEHGHAQLIGCGAG------ELLAEDLRQAQQHLGEITGAFTSDDLLGRIFSSFCIGK 455
>gi|359455340|ref|ZP_09244572.1| tRNA modification GTPase MnmE [Pseudoalteromonas sp. BSi20495]
gi|358047570|dbj|GAA80821.1| tRNA modification GTPase MnmE [Pseudoalteromonas sp. BSi20495]
Length = 454
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 196/464 (42%), Positives = 275/464 (59%), Gaps = 23/464 (4%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
AT PGRGGVGIIR+SG S+ E V K K R+A Y F +D+G+ IYF
Sbjct: 11 ATAPGRGGVGIIRVSGSLAKSVAEKVVGKIPK---VRYADYVPFKSLAGEQLDQGIAIYF 67
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP++L MLL EI K G+RLA PGEF++RAF+N+KLDL
Sbjct: 68 AGPNSFTGEDVLELQGHGGPVVLDMLLK---EISKIEGVRLAKPGEFSERAFMNDKLDLT 124
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLINA++E AAKSA+ SL G+FSK I L++K+I+LR +E + DFP+E +
Sbjct: 125 QAEAIADLINATSEQAAKSALQSLQGEFSKHIETLVEKVIHLRMYVEAAIDFPDEEIDF- 183
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L I +L + Q K+ +++R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 184 LSDGKVSGDLDAIINQLNTVTNQAKQGSIMREGMRVVIAGRPNAGKSSLLNALAGREAAI 243
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG ++++ + VE+IGIER W E+ +
Sbjct: 244 VTEIAGTTRDVLREHIHIDGMPLHIIDTAG-------LRESPDRVEQIGIERAWDEINQA 296
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D TD K + + P + V + NK D SG + + I
Sbjct: 297 DRVLFMLDGTDTTDTDPHKIWPEFMAKLPEGMGVTVIRNKADLSGDIVGMEQEQQYPVIS 356
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA GI L+R L I E ++AR RH+ +L A Y+L +++
Sbjct: 357 LSAKNADGIELVREHLKACIGFQGATEGG-FMARRRHLDALESAAYHLDT-----GKTQL 410
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
E++AE+LR + L+ I G+ T++DLL IFS FCIGK
Sbjct: 411 EMHIAGEILAEELRLTQQYLNEITGEFTSDDLLGKIFSSFCIGK 454
>gi|320539849|ref|ZP_08039508.1| GTP-binding protein with a role in modification of tRNA [Serratia
symbiotica str. Tucson]
gi|320030035|gb|EFW12055.1| GTP-binding protein with a role in modification of tRNA [Serratia
symbiotica str. Tucson]
Length = 454
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 189/474 (39%), Positives = 279/474 (58%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
++ I+ ATPPGRGG+GI+R+SG E+ K KPR+A + F
Sbjct: 1 MSTTDTIVAQATPPGRGGIGILRISGSK---AKEVALALLGKLPKPRYADFLPFRDVAGI 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D+G+ ++F AP+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++R
Sbjct: 58 TLDQGIALWFPAPNSFTGEDVLELQGHGGPVILDLLLKRVLAL---PGVRIARPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AF+N+KLDL Q EAI DLI+AS+E AA+SAM SL G FS I L++ L +LR +E +
Sbjct: 115 AFINDKLDLAQAEAIADLIDASSEQAARSAMNSLQGAFSTRIYQLVEALTHLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAQLNGVMAALDSVRGEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFD---KKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D T+ ++ P +P+ V NK D +G I
Sbjct: 287 ERAWNEIEQADRVLFMVDGTTTVATEPAEIWQEFTARLPQRLPITVVRNKADITGETLGI 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N + I LSA GI+LLR+ L + T +E +LAR RH+ +L +A +L
Sbjct: 347 TEVNGHSLIRLSARTGEGIDLLRDHLKQSMGFTSNMEGG-FLARRRHLQALEQAARHLVQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + + EL+AE+LR LS I G+ +++DLL IFS FCIGK
Sbjct: 406 GKEQLVSAYAG-----ELLAEELRLAQLALSKITGEFSSDDLLGRIFSSFCIGK 454
>gi|90194134|gb|ABD92628.1| ThdF [Mannheimia granulomatis]
Length = 436
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 191/466 (40%), Positives = 285/466 (61%), Gaps = 43/466 (9%)
Query: 13 TPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFK 72
TP GRGGVGI+R+SG ++ E V K +L+PR A Y F ++ ++D+G+ ++FK
Sbjct: 1 TPIGRGGVGILRVSGPLAETVAEAVLGK---KLQPRLANYLPFKDEDGTVLDQGIALFFK 57
Query: 73 APHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQ 132
AP+S+TGEDV+EL GHGG +IL +L+ L++ G+R+A GEF+++AFLN+KLDL Q
Sbjct: 58 APNSFTGEDVLELQGHGGQVILDLLIKRILQVN---GIRIARAGEFSEQAFLNDKLDLAQ 114
Query: 133 VEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELIL 192
EAI DLI+A++E AA+SA+ SL G+FS IN L+D +I LRT +E + DFP+E + +
Sbjct: 115 AEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEEIDFLA 174
Query: 193 NKNDFFNELIKIKKKLLKIIQQ-------GKKRALIRNGLNVVLIGQPNVGKSSLFNSLV 245
+ KI+ KL +II Q K+ +++R G+ VV+ G+PN GKSSL N+L
Sbjct: 175 DG--------KIESKLNEIINQLDGVRREAKQGSILREGMKVVIAGRPNAGKSSLLNALA 226
Query: 246 GSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTW 305
G + AIVT+IAGTTRD + + I I+ I DTAG+ D +EVE+IGI+R W
Sbjct: 227 GREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLRDTG-------DEVERIGIKRAW 279
Query: 306 VELKNSDIIIYVQDARYDKHTDFDKK---IIKNFPMNIPVIYVWNKIDYSGHQKNINYKN 362
E+ +D ++ + D+ + F + ++ P NIPV + NK+D SG + + +
Sbjct: 280 DEIAQADHVLLMIDSTEQQADQFRSEWADFLEKLPKNIPVTVIRNKVDLSGESEGLIQVD 339
Query: 363 NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP---YLARERHIHSLNEANYYLSCA 419
+ I LSA ++GI+LLR D ++K+ +SS +LAR RH+ +L A +L
Sbjct: 340 DFTMIRLSAQTKVGIDLLR----DHLKKSMGYQSSTEGGFLARRRHLQALETAATHLERG 395
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
+ Q EL+AE+LR LS I G+ T++DLL NIF
Sbjct: 396 HVQLTQFFAG-----ELLAEELRMVQNALSEITGQFTSDDLLGNIF 436
>gi|90194140|gb|ABD92631.1| ThdF [Pasteurella canis]
Length = 436
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 189/458 (41%), Positives = 276/458 (60%), Gaps = 27/458 (5%)
Query: 13 TPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFK 72
T PGRGG+GI+R+SG + V K K PR A Y F + I+D+G+ +YFK
Sbjct: 1 TAPGRGGIGILRVSGPKSVEVANAVLGKCPK---PRVADYLPFKDLDGTILDQGIALYFK 57
Query: 73 APHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQ 132
APHS+TGEDV+EL GHGG ++L +LL L+I G+RLA PGEF+++AFLN+KLDL Q
Sbjct: 58 APHSFTGEDVLELQGHGGQVVLDLLLKRILQIE---GVRLARPGEFSEQAFLNDKLDLAQ 114
Query: 133 VEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELIL 192
EAI DLI+AS+E AA+SA+ SL G+FS +N L+D +I LRT +E + DFP+E + +
Sbjct: 115 AEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEEIDFLA 174
Query: 193 NK--NDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVA 250
+ NE+I +L K+ + K+ +++R G+ VV+ G+PN GKSSL N+L G + A
Sbjct: 175 DGKIEAHLNEII---LQLDKVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREAA 231
Query: 251 IVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKN 310
IVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI R W E++
Sbjct: 232 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREATDEVERIGIVRAWSEIEQ 284
Query: 311 SDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANI 367
+D I+ + D+ + D + + + P IP+ + NK D SG + + ++ I
Sbjct: 285 ADRILLMLDSTEPNNQDLETIRVEFLAKLPATIPITMIRNKADLSGEIEGLKEQSGYTVI 344
Query: 368 YLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSE 427
LSA + G++LLR L + QT +LAR RH+ +L +A ++L + Q
Sbjct: 345 TLSAKTQQGVDLLREHLKQSM-GYQTNTEGGFLARRRHLEALEKAAHHLRQGHIQLTQFY 403
Query: 428 KNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR LS I G+ T++DLL NIF
Sbjct: 404 AG-----ELLAEELRMVQNHLSEITGQFTSDDLLGNIF 436
>gi|421496347|ref|ZP_15943579.1| tRNA modification GTPase MnmE [Aeromonas media WS]
gi|407184611|gb|EKE58436.1| tRNA modification GTPase MnmE [Aeromonas media WS]
Length = 453
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 190/468 (40%), Positives = 270/468 (57%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGI+R+SG + EIV K + R+A Y F + +D+G+
Sbjct: 6 IVAQATAPGRGGVGIVRVSGPAAEQVAEIVLGKLPRV---RYAEYLPFRDEQGQPLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+ FKAP+S+TGEDV+EL GHGGP+IL ML+ L+I G+R A PGEF++RAFLN+K
Sbjct: 63 ALLFKAPNSFTGEDVLELQGHGGPVILDMLIRRILQIE---GIRPARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+E AA+SAM SL G+FS I L++ L LR +E + DFP+E
Sbjct: 120 LDLAQAEAIADLIEASSEQAARSAMHSLQGQFSGKIQQLVESLTRLRIYVEAAIDFPDEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L I +L + + K+ AL+R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LSDGKVAGDLYAIMAELDAVRGEAKQGALLREGMKVVIAGRPNAGKSSLLNALAGR 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D K VE+IGIER W E
Sbjct: 239 ESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTQDK-------VEQIGIERAWAE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D D + + + P I + V NK D +G + +
Sbjct: 292 IEQADRVLFMVDGTTTDAVDPREIWPEFVDRLPKKIGLTVVRNKADLTGEDLEPSQELGH 351
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
A +SA +G+ LR L + E ++AR RH+ +L A L ++
Sbjct: 352 AVYRISAKTELGLPALREHLKACMGFQGNTEGG-FMARRRHLDALERAAERL-----LVA 405
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR E LS I G+ +++DLL IFS FCIGK
Sbjct: 406 KEQLEVYVAGELVAEELRLAQESLSEITGEFSSDDLLGRIFSSFCIGK 453
>gi|190171314|gb|ACE63727.1| ThdF [Cronobacter sakazakii]
Length = 439
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 184/457 (40%), Positives = 273/457 (59%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SG+ + + V K K R+A Y F + +D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRVSGQQARDVAQAVLGKLPKA---RYADYLPFKDADGTALDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWQEIEQA 288
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D TD + I P +P+ V NK D +G Q I+ N + I
Sbjct: 289 DRVLFMVDGTTTDATDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGISEVNGHSLIR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA G+ +LRN L + ++E +LAR RH+ +L +A +L + +
Sbjct: 349 LSARTNEGVGVLRNHLKQSMGFDTSMEGG-FLARRRHLQALEDAANHLQQGKAQLLGAWA 407
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G-----ELLAEELRLAQQALSEITGEFTSDDLLGRIF 439
>gi|28872710|ref|NP_795329.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213968446|ref|ZP_03396589.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tomato T1]
gi|301384266|ref|ZP_07232684.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tomato
Max13]
gi|302063883|ref|ZP_07255424.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tomato K40]
gi|302131967|ref|ZP_07257957.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|32171793|sp|Q87TS2.1|MNME_PSESM RecName: Full=tRNA modification GTPase MnmE
gi|28855966|gb|AAO59024.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213926734|gb|EEB60286.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tomato T1]
Length = 456
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 189/471 (40%), Positives = 276/471 (58%), Gaps = 28/471 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT GRGGVGI+R+SG + + T + KPRFA Y F ++ ++D+G+
Sbjct: 8 IAAIATAQGRGGVGIVRVSGPLAGKTAQAI---TGRMPKPRFAHYGPFADESGQVLDEGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P+S+TGEDV+EL GHGGPI+L MLL CL++G RLA PGEF++RAFLN+K
Sbjct: 65 ALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS----RLARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+ AA++A+ SL G FS+ ++ L +KLI+LR +E + DFPEE
Sbjct: 121 LDLAQAEAIADLIEASSAQAARNALRSLQGVFSQRVDNLTEKLISLRIYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + + L ++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDFLADGH-VLGMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ + DTAG+ D ++VE IG++R
Sbjct: 240 EAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQ-------DQVEMIGVQRALKA 292
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
+ +D I+ V DA + D + ++ P V + NK D SG + +
Sbjct: 293 IGEADRILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKADLSGDSIALQTSAD- 351
Query: 365 ANIYLSASKRI---GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIK 421
++ +S S R G+ LLR L + QT ESS + AR RH+ +L A+ L
Sbjct: 352 GHVTISLSARSGGEGLELLREHLKACMGYEQTSESS-FSARRRHLEALRHASDSLEH--- 407
Query: 422 IINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 408 --GRAQLTLAGAGELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|90194124|gb|ABD92623.1| ThdF [Actinobacillus porcinus]
Length = 436
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 189/458 (41%), Positives = 278/458 (60%), Gaps = 27/458 (5%)
Query: 13 TPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFK 72
TP GRGGVGI+R+SG + + V KT LKPR A Y F + +D+G+ ++FK
Sbjct: 1 TPIGRGGVGILRVSGPLAEDVAKAVVGKT---LKPRLANYLPFKDIDGTTLDQGIALFFK 57
Query: 73 APHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQ 132
AP+S+TGEDV+EL GHGG I+L +LL L++ G+RLA PGEF+++AFLN+KLDL Q
Sbjct: 58 APNSFTGEDVLELQGHGGQIVLDLLLKRILQVK---GVRLAKPGEFSEQAFLNDKLDLAQ 114
Query: 133 VEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELIL 192
EAI DLI+AS+E AA+SA+ SL G+FS +N L++++I LRT +E + DFP+E + +
Sbjct: 115 AEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVEQVIYLRTYVEAAIDFPDEEIDFLA 174
Query: 193 NK--NDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVA 250
+ NE+I +L + ++ ++ +++R G+ VV+ G+PN GKSSL N+L G + A
Sbjct: 175 DGKIEGHLNEII---AQLDNVRREARQGSILREGMKVVIAGRPNAGKSSLLNALAGREAA 231
Query: 251 IVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKN 310
IVT IAGTTRD + + I I+ I DTAG+ D +EVE+IGI R W E++
Sbjct: 232 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT-------DEVERIGITRAWNEIEQ 284
Query: 311 SDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANI 367
+D ++ + D+ D +K + + P N+PV + NK D SG ++I +N I
Sbjct: 285 ADRVLLMLDSSDPASNDLEKVRSEFLAKLPANLPVTIIRNKTDLSGEGESIQEENGYTII 344
Query: 368 YLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSE 427
LSA + G++ LR L + QT +LAR RH+ +L +A +L + Q
Sbjct: 345 RLSAQTQQGVDFLREHLKQSM-GYQTGTEGGFLARRRHLEALEKAAEHLQAGHIQLTQFY 403
Query: 428 KNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR LS I G+ T++DLL NIF
Sbjct: 404 AG-----ELLAEELRLVQNCLSEITGQFTSDDLLGNIF 436
>gi|190171220|gb|ACE63680.1| ThdF [Enterobacter kobei]
Length = 439
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 188/458 (41%), Positives = 273/458 (59%), Gaps = 25/458 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRISGLKAREVAEAVLGKLPK---PRYADYLPFKDSDGTPLDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIAKPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNQVMSDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGIERAWQEIEQA 288
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D D + I P +P+ V NK D +G I+ N + I
Sbjct: 289 DRVLFMVDGTTTDAVDPAEIWPDFIARLPAKLPITVVRNKADVTGETLGISDVNGHSLIR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNE-ANYYLSCAIKIINQSE 427
LSA G++ LRN L + ++E +LAR RH+ +L E AN+ + ++I
Sbjct: 349 LSARTGEGVDDLRNHLKQSMGFDTSMEGG-FLARRRHLQALEEAANHLVQGKAQLIGAWA 407
Query: 428 KNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G------ELLAEELRLAQQNLSEITGEFTSDDLLGRIF 439
>gi|406675055|ref|ZP_11082246.1| tRNA modification GTPase mnmE [Aeromonas veronii AMC35]
gi|404628193|gb|EKB24979.1| tRNA modification GTPase mnmE [Aeromonas veronii AMC35]
Length = 453
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 188/468 (40%), Positives = 272/468 (58%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGI+R+SG + IV K + R+A Y F + ++D+G+
Sbjct: 6 IVAQATAPGRGGVGIVRVSGPAAEQVAGIVLGKLPRV---RYAEYLPFKDEQGQVLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+ FKAP+S+TGEDV+EL GHGGP+I+ ML+ L+I G+R A PGEF++RAF+N+K
Sbjct: 63 ALLFKAPNSFTGEDVLELQGHGGPVIMDMLIRRILKID---GIRPARPGEFSERAFINDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+E AA+SAM SL G+FS I L++ LI LR +E + DFP+E
Sbjct: 120 LDLAQAEAIADLIEASSEQAARSAMHSLQGQFSSKIQQLVESLIRLRIYVEAAIDFPDEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L I +L + + K+ AL+R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LSDGKVAGDLYSIMSELDDVRGEAKQGALLREGMKVVIAGRPNAGKSSLLNALAGR 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D K VE+IGIER W E
Sbjct: 239 ESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTQDK-------VEQIGIERAWAE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D D + + + P NI + + NK D +G + +
Sbjct: 292 IEQADRVLFMVDGTTTNAVDPREIWPEFVDRLPKNIGLTVIRNKADLTGEDLAPSQEQGH 351
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
A +SA +G+ LR L + E ++AR RH+ +L A L ++
Sbjct: 352 AVYRISAKTELGLPALREHLKACMGFQGNTEGG-FMARRRHLDALERAAERL-----LVA 405
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR E LS I G+ +++DLL IFS FCIGK
Sbjct: 406 KEQLEVFVAGELVAEELRLAQESLSEITGEFSSDDLLGRIFSSFCIGK 453
>gi|117619237|ref|YP_858697.1| tRNA modification GTPase TrmE [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|166200466|sp|A0KQZ6.1|MNME_AERHH RecName: Full=tRNA modification GTPase MnmE
gi|117560644|gb|ABK37592.1| tRNA modification GTPase TrmE [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 453
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 189/468 (40%), Positives = 271/468 (57%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGI+R+SG + EIV K + R+A Y F + +D+G+
Sbjct: 6 IVAQATAPGRGGVGIVRVSGPAAEQVAEIVLGKLPRV---RYAEYLPFRDEQGQPLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+ FKAP+S+TGEDV+EL GHGGP+I+ ML+ L+I GLR A PGEF++RAF+N+K
Sbjct: 63 ALLFKAPNSFTGEDVLELQGHGGPVIMDMLVRRILQIK---GLRPARPGEFSERAFMNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+E AA+SAM SL G+FS I L++ L LR +E + DFP+E
Sbjct: 120 LDLAQAEAIADLIEASSEQAARSAMHSLQGQFSGKIQQLVESLTRLRIYVEAAIDFPDEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L I +L + + K+ AL+R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LSDGKVAGDLYAIMAELDDVRGEAKQGALLREGMKVVIAGRPNAGKSSLLNALAGR 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D K VE+IGIER W E
Sbjct: 239 ESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTQDK-------VEQIGIERAWAE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D D + + + P I + V NK D +G + +
Sbjct: 292 IEQADRVLFMVDGTTTAAVDPREIWPEFVDRLPKKIGLTVVRNKADLTGEDLAPSQELGH 351
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
A +SA +G++ LR L + E ++AR RH+ +L A L ++
Sbjct: 352 AVYRISAKTELGLSALREHLKACMGFQGNTEGG-FMARRRHLDALERAAERL-----LVA 405
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR E LS I G+ +++DLL IFS FCIGK
Sbjct: 406 KEQLEVFVAGELVAEELRLAQESLSEITGEFSSDDLLGRIFSSFCIGK 453
>gi|161830089|ref|YP_001597738.1| tRNA modification GTPase TrmE [Coxiella burnetii RSA 331]
gi|14195264|sp|P94612.1|MNME_COXBU RecName: Full=tRNA modification GTPase MnmE
gi|189036199|sp|A9KBS9.1|MNME_COXBN RecName: Full=tRNA modification GTPase MnmE
gi|189036200|sp|A9NBA7.1|MNME_COXBR RecName: Full=tRNA modification GTPase MnmE
gi|1780759|emb|CAA71458.1| unnamed protein product [Coxiella burnetii]
gi|161761956|gb|ABX77598.1| tRNA modification GTPase TrmE [Coxiella burnetii RSA 331]
Length = 452
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 200/469 (42%), Positives = 289/469 (61%), Gaps = 29/469 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I ATP GRGG+G++R+SG+ +I + + K PR+AT+ F + ++ID+G+
Sbjct: 9 IAAQATPSGRGGIGVVRVSGEKTKAIAQKILGCVPK---PRYATFVKFR-DSGSVIDEGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P+S+TGEDV+ELHGHGGP+++ LL++ L+ G R A PGEF++RAFLNNK
Sbjct: 65 ALYFPKPNSFTGEDVLELHGHGGPVVMDRLLNTVLKAGA----RQARPGEFSERAFLNNK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EA+ DLINAS+E AA+SAM SL G+FSK I+ L+D LI LR IE S DFPEE
Sbjct: 121 IDLAQAEAVADLINASSEQAARSAMRSLQGEFSKRIHQLVDALIQLRMYIEASIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + ++ L + ++ +I + K+ AL+R G+ VV+ G+PNVGKSSL N L G
Sbjct: 181 IDFLADER-IKETLENLTHQVQEIEKTAKQGALLREGITVVIAGEPNVGKSSLLNLLSGQ 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD I ++I I+ + DTAG+ ++ +++ VEK G+ RT
Sbjct: 240 ETAIVTDIAGTTRDIIRESIHIDGLPIHVVDTAGL-----RLTEDV--VEKEGVRRTQKA 292
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNFPMN---IPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D+++ + DA DF K I + F N IP + V NKID G K
Sbjct: 293 VQQADLLLLMIDASKPTE-DFKKIIAQWFSENDNKIPTLIVENKIDLIGEAPRKENK-EY 350
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCA-IKII 423
+I LS R G+ LL+N L + T E++ ++AR RH ++ A+ +L A ++
Sbjct: 351 PHIKLSVKTRAGVELLKNHLKNTAGFEATHENN-FIARRRHCDAIARASAFLKNANNHLL 409
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
NQ K EL+AEDL+ LS I G+ T++DLL IFS+FCIGK
Sbjct: 410 NQ------KAGELVAEDLKLAQNALSEITGEFTSDDLLGKIFSEFCIGK 452
>gi|410629284|ref|ZP_11339988.1| tRNA modification GTPase mnmE [Glaciecola mesophila KMM 241]
gi|410151080|dbj|GAC26757.1| tRNA modification GTPase mnmE [Glaciecola mesophila KMM 241]
Length = 460
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 194/481 (40%), Positives = 286/481 (59%), Gaps = 33/481 (6%)
Query: 2 LTKNSP----IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKP-RFATYSSFF 56
+ +N+P I+ AT GRGGVGI+R+SG S+ V +K + P R A Y F
Sbjct: 3 VEQNTPDQDTIVAQATASGRGGVGIVRVSG----SLAAKVAEKLIGHVPPVRNAQYVPFK 58
Query: 57 CKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPG 116
+D+G+ ++FKAPHS+TGEDV+EL GHGG ++L ML+ + L + +RLA PG
Sbjct: 59 ANTGEPLDQGIALFFKAPHSFTGEDVLELQGHGGQVVLDMLIKATLHVPN---VRLARPG 115
Query: 117 EFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTL 176
EF++RA+LN+KLDL Q EAI DLI+AS+E AA+ A+ SL G+FS IN L++ L +LR
Sbjct: 116 EFSERAYLNDKLDLAQAEAIADLIDASSEQAARGALRSLQGEFSTQINSLVELLTHLRIY 175
Query: 177 IEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVG 236
+E + DFP+E + L+ N+L I K+L + + ++ +L+R G+ VV+ G+PN G
Sbjct: 176 VEAAIDFPDEEIDF-LSDGKVQNDLKAITKQLSSVKSKAQQGSLLREGMRVVIAGRPNAG 234
Query: 237 KSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEV 296
KSSL N+L G D AIVT+IAGTTRD + + I I+ I DTAG+ D + +EV
Sbjct: 235 KSSLLNALAGRDAAIVTAIAGTTRDVLKEHIHIDGMPLHIIDTAGLRD-------SSDEV 287
Query: 297 EKIGIERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSG 353
E+IGIER W E++ +D ++++ D+ D K + ++ P NI + + NK D SG
Sbjct: 288 ERIGIERAWQEIEQADRVLFMLDSTETHENDPHKIWPEFMRRLPKNIGLTVIRNKADLSG 347
Query: 354 HQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEAN 413
++ LSAS + GI +L L + + + E ++AR RHI ++ A
Sbjct: 348 ENVGKVQYDDYPVFQLSASHKQGIEVLAEHLKECMGFHSSNEGQ-FIARRRHIDAIERAE 406
Query: 414 YYLSCAIKIINQSEKNFEKNL--ELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIG 471
+L ++ E NL EL+AE+LR LS I G+ +++DLL IFS FCIG
Sbjct: 407 EHLLLG-------KQQLEDNLAGELLAEELRLAQSYLSEITGEFSSDDLLGKIFSSFCIG 459
Query: 472 K 472
K
Sbjct: 460 K 460
>gi|229593496|ref|YP_002875615.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens SBW25]
gi|229365362|emb|CAY53749.1| probable tRNA modification GTPase [Pseudomonas fluorescens SBW25]
Length = 456
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 189/478 (39%), Positives = 282/478 (58%), Gaps = 28/478 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M I +AT GRGGVGI+R+SG L S+ + ++LKPR+A Y F +
Sbjct: 1 MSAPRETIAAVATAQGRGGVGIVRISGP-LASVAANAI--SGRELKPRYAHYGPFLDADQ 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+++D+GL +YF P+S+TGEDV+EL GHGGP++L MLL CL++G RLA PGEF++
Sbjct: 58 SVLDEGLALYFPGPNSFTGEDVLELQGHGGPVVLDMLLQRCLQLG----CRLARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
+AFLN+KLDL Q EAI DLI AS+ AA++A+ SL G FS ++ L ++LI+LR +E +
Sbjct: 114 QAFLNDKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSLRVHNLTEQLISLRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + + + + L K++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDFLADGH-VLAMLDKVRDELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + ++VEKIG
Sbjct: 233 LNALAGREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTD-------DQVEKIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
+ER + +D ++ V DA + D + ++ P V + NK D +G
Sbjct: 286 VERALKAIGEADRVLLVVDATAPEAVDPFALWPEFLEQRPDPAKVTLIRNKADLTGEAIA 345
Query: 358 INYKNNIANIYLSASKRI---GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ + ++ LS S + G+ LLR L + QT ESS + AR RH+ +L A+
Sbjct: 346 METSAD-GHVTLSLSAKSAGEGLELLREHLKACMGYEQTSESS-FSARRRHLEALRHASA 403
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L +++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 404 ALEH-----GRAQLTLAGAGELLAEDLRQAQQLLGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|167626215|ref|YP_001676509.1| tRNA modification GTPase TrmE [Shewanella halifaxensis HAW-EB4]
gi|189036208|sp|B0TQH0.1|MNME_SHEHH RecName: Full=tRNA modification GTPase MnmE
gi|167356237|gb|ABZ78850.1| tRNA modification GTPase TrmE [Shewanella halifaxensis HAW-EB4]
Length = 453
Score = 338 bits (867), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 189/468 (40%), Positives = 278/468 (59%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG ++ V K R+A Y F + +ID+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGDLASNVAMAVLGHIPK---TRYADYCDFKEDSGEVIDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++FK P+S+TGEDV+EL GHGG I+L ML+ +E+ GLR+A PGEF+++AF+N+K
Sbjct: 63 ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVD---GLRIAKPGEFSEQAFMNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AAKSA+ SL G+FS ++ L++K+ NLR +E + DFP+E
Sbjct: 120 LDLTQAEAIADLIDATSEQAAKSALNSLQGEFSTQVHDLVEKVTNLRLYVEAAIDFPDEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ L I KL + K+ ++IR G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 VDF-LSDGKIAASLNGIIGKLDGVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D + VEKIGIER W E
Sbjct: 239 ESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRD-------TADTVEKIGIERAWDE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D D + I P N+ V V NK D +G I +
Sbjct: 292 IRTADRVLFMVDGTTTPAVDPHEIWPDFIDRLPNNLGVTVVRNKADLTGEDLAITTEAGH 351
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
+ +SA +G++ L+ L L+ +E ++AR RH+ +L+ A+ +L ++
Sbjct: 352 SVYRISAKTGLGVDDLKQHLKSLMGYQSNLEGG-FIARRRHLEALDLASSHL-----LLG 405
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + + EL+AE+LR C LS I GK T++DLL IFS FCIGK
Sbjct: 406 KEQLEVYQAGELLAEELRMCQMALSEITGKFTSDDLLGKIFSSFCIGK 453
>gi|190171258|gb|ACE63699.1| ThdF [Cronobacter dublinensis]
Length = 439
Score = 338 bits (867), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 184/457 (40%), Positives = 273/457 (59%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SG+ + + V K K R+A Y F + +D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRVSGQQARDVAQAVLGKLPKA---RYADYLPFKDADGTALDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWQEIEQA 288
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D TD + I P +P+ V NK D +G Q I+ N + I
Sbjct: 289 DRVLFMVDGTTTDATDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGISEVNGHSLIR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA G+++LRN L + ++E +LAR RH+ +L A +L + +
Sbjct: 349 LSARTNEGVDVLRNHLKQSMGFDTSMEGG-FLARRRHLQALETAANHLQQGKAQLLGAWA 407
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G-----ELLAEELRLAQQALSEITGEFTSDDLLGRIF 439
>gi|90194138|gb|ABD92630.1| ThdF [Pasteurella multocida subsp. septica]
Length = 433
Score = 338 bits (867), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 187/458 (40%), Positives = 273/458 (59%), Gaps = 35/458 (7%)
Query: 13 TPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFK 72
T PGRGG+GI+R+SG + V K K PR A Y F + +++D+G+ +YFK
Sbjct: 1 TAPGRGGIGILRVSGPKAVEVAHAVLGKCPK---PRMADYLPFKDSDGSVLDQGIALYFK 57
Query: 73 APHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQ 132
APHS+TGEDV+EL GHGG ++L +LL L++ GLRLA PGEF+++AFLN+KLDL Q
Sbjct: 58 APHSFTGEDVLELQGHGGQVVLDLLLKRILQLE---GLRLARPGEFSEQAFLNDKLDLAQ 114
Query: 133 VEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELIL 192
EAI DLI+AS+E AA+SA+ SL G+FS +N L+D +I LRT +E + DFP+E + +
Sbjct: 115 AEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEEIDFLA 174
Query: 193 NK------NDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVG 246
+ ND +L ++ + K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 175 DGKIEAHLNDIITQLDHVRS-------EAKQGSILREGMKVVIAGRPNAGKSSLLNALAG 227
Query: 247 SDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWV 306
+ AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI R W
Sbjct: 228 REAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREATDEVERIGIVRAWS 280
Query: 307 ELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNN 363
E++ +D I+ + D+ + D +K + + P NIPV V NK D SG ++ I ++
Sbjct: 281 EIEQADRILLMLDSTEADNQDLEKVRSEFLTKLPSNIPVTIVRNKADLSGEKEGIVEQHG 340
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA + G+ LLR L + +E +LAR RH+ +L +A +L +
Sbjct: 341 YTVITLSAKTQQGVALLREHLKHSMGYQTNMEGG-FLARRRHLEALEQAATHLQQGHVQL 399
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLL 461
Q EL+AE+LR LS I G+ T++DLL
Sbjct: 400 TQFYAG-----ELLAEELRRVQNHLSEITGQFTSDDLL 432
>gi|190171170|gb|ACE63655.1| ThdF [Citrobacter sp. NZ3872_90]
Length = 439
Score = 338 bits (867), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 186/457 (40%), Positives = 271/457 (59%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SG + E V K K PR+A Y F ++ + +D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRISGLKASEVAETVLGKLPK---PRYADYLPFKDEDGSALDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNSVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGIERAWQEIEQA 288
Query: 312 DIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D D I P +P+ V NK D +G ++ N + +
Sbjct: 289 DRVLFMVDGTTTDAVDPADIWPDFIARLPAKLPITVVRNKADITGETLGLSEVNGHSLVR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA G+++LRN L + +E +LAR RH+ +L EA +L + +
Sbjct: 349 LSARTGEGVDVLRNHLKQSMGFETNMEGG-FLARRRHLQALAEAAEHLQQGKAQLLGAWA 407
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIF 439
>gi|90194086|gb|ABD92604.1| ThdF [Actinobacillus minor NM305]
Length = 436
Score = 338 bits (867), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 185/462 (40%), Positives = 277/462 (59%), Gaps = 35/462 (7%)
Query: 13 TPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFK 72
TP GRGGVGI+R+SG + + V K +LKPR A Y F + ++D+G+ ++FK
Sbjct: 1 TPIGRGGVGILRVSGPLANEVAKAVVGK---ELKPRLANYLPFMDTDGTVLDQGIALFFK 57
Query: 73 APHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQ 132
AP+S+TGEDV+EL GHGG +IL +LL L + G+R+A GEF+++AFLN+KLDL Q
Sbjct: 58 APNSFTGEDVLELQGHGGQVILDLLLKRILAVK---GVRIARAGEFSEQAFLNDKLDLAQ 114
Query: 133 VEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELIL 192
EAI DLI+A++E AA+SA+ SL G+FS +N L+D +I LRT +E + DFP+E + +
Sbjct: 115 AEAIADLIDATSEQAARSALKSLQGEFSNKVNELVDSVIYLRTYVEAAIDFPDEEIDFLA 174
Query: 193 NK------NDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVG 246
+ ND +L ++K + K+ +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 175 DGKIEAKLNDIITQLANVRK-------EAKQGSILREGMKVVMPGKPNAGKSSLLNALAG 227
Query: 247 SDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWV 306
+ AIVT+IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI+R W
Sbjct: 228 REAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGIQRAWD 280
Query: 307 ELKNSDIIIYVQDARYDKHTDFD---KKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNN 363
E+ +D ++ + D+ + F + + P NIPV + NK+D SG + + ++
Sbjct: 281 EIAQADHVLLMIDSSEQQADVFKTEWAEFLAKLPQNIPVTVIRNKVDLSGESEGLEQQDG 340
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA ++G++LLR L + + E +LAR RH+ +L A +L +
Sbjct: 341 FTLIRLSAQTKVGVDLLREHLKQSMGYQSSTEGG-FLARRRHLQALETAAEHLERGHVQL 399
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
Q EL+AE+LR LS I G+ T++DLL NIF
Sbjct: 400 TQFFAG-----ELLAEELRMVQNALSEITGQFTSDDLLGNIF 436
>gi|90194090|gb|ABD92606.1| ThdF [Actinobacillus genomosp. 2]
gi|90194096|gb|ABD92609.1| ThdF [Actinobacillus arthritidis]
Length = 436
Score = 338 bits (867), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 191/460 (41%), Positives = 282/460 (61%), Gaps = 31/460 (6%)
Query: 13 TPPGRGGVGIIRLSGKNLWSIVEIVCKKT-KKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
TP GRGGVGI+R+SG + + V K+ K+LKPR A Y F ++ ++D+G+ ++F
Sbjct: 1 TPIGRGGVGILRISG----PLAQTVAKEVLGKELKPRLANYLPFKDQDGTVLDQGIALFF 56
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
KAP+S+TGEDV+EL GHGG +IL +LL LEI G+R+A GEF+++AFLN+KLDL
Sbjct: 57 KAPNSFTGEDVLELQGHGGQVILDILLKRILEIK---GIRIARAGEFSEQAFLNDKLDLA 113
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+A++E AA+SA+ SL G+FS IN L+D +I LRT +E + DFP+E +
Sbjct: 114 QAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEEIDF- 172
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L L I ++L + ++ K+ A++R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 173 LADGKIEGHLNDIIRQLNGVRKEAKQGAILREGMKVVIAGRPNAGKSSLLNALAGREAAI 232
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT+IAGTTRD + + I I+ I DTAG +++ +EVE+IGI+R W E++ +
Sbjct: 233 VTNIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIQRAWDEIEQA 285
Query: 312 DIIIYVQDARYDKHTDFDKK---IIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++ + D+ F + + P NIPV + NK+D SG + + + I
Sbjct: 286 DHVLLMIDSTEQTAEAFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIR 345
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSP---YLARERHIHSLNEANYYLSCAIKIINQ 425
LSA ++G++LLR L +K+ +SS +LAR RH+ +L A +L + Q
Sbjct: 346 LSAQTKVGVDLLREHL----KKSMGYQSSTEGGFLARRRHLQALETAAEHLERGHIQLTQ 401
Query: 426 SEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR LS I G+ T++DLL NIF
Sbjct: 402 FFAG-----ELLAEELRMVQNALSEITGQFTSDDLLGNIF 436
>gi|422016765|ref|ZP_16363344.1| tRNA modification GTPase TrmE [Providencia burhodogranariea DSM
19968]
gi|414092002|gb|EKT53682.1| tRNA modification GTPase TrmE [Providencia burhodogranariea DSM
19968]
Length = 454
Score = 338 bits (867), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 189/474 (39%), Positives = 285/474 (60%), Gaps = 23/474 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
+ N I+ ATPPGRGGVGI+R+SG + + + K K PR+A Y F N+
Sbjct: 1 MQTNDTIVAQATPPGRGGVGILRVSGPKAALVAQTILGKLPK---PRYADYLPFRDVNDT 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F P+S+TGEDV+EL GHGGP+IL +LL L I G+R+A PGEF++R
Sbjct: 58 VLDQGIALFFPGPNSFTGEDVLELQGHGGPVILDLLLRRILTID---GIRIANPGEFSER 114
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS+E AA+SAM SL G FS I+ +++ L LR +E +
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSAMNSLQGAFSAQIHHMVETLTTLRIYVEAAI 174
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E + L+ +L ++ L ++ + ++ +L+R G+ VV+ G+PN GKSSL
Sbjct: 175 DFPDEEIDF-LSDGKIEAKLDEVIADLGRVRSEARQGSLLREGMKVVIAGRPNAGKSSLL 233
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ I DTAG +++ +EVE+IGI
Sbjct: 234 NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGI 286
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
ER W E++ +D ++++ D+ T+ + + P +PV + NK D +G +
Sbjct: 287 ERAWKEIEQADRVLFMLDSTTTNATEPQAIWPEFMARLPDTLPVTVIRNKADKTGEEIEF 346
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
I LSA + GI+LLR+ L + + E +LAR RH+ +L+ A +L+
Sbjct: 347 VEDVRYPLIRLSAREEKGIDLLRDHLKEAMGFKGNTEGG-FLARRRHLQALDAAATHLAQ 405
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ ++ EL+AE+LR +LS I G+ +++DLL IFS FCIGK
Sbjct: 406 -----GHEQLVVARSGELLAEELRLAQLELSEITGEFSSDDLLGRIFSSFCIGK 454
>gi|190171184|gb|ACE63662.1| ThdF [Enterobacter asburiae]
Length = 439
Score = 338 bits (867), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 188/458 (41%), Positives = 273/458 (59%), Gaps = 25/458 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRISGLKAREVAEAVLGKLPK---PRYADYLPFKDTDGTPLDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIAKPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNQVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGIERAWQEIEQA 288
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D D + I P +P+ V NK D +G I+ N + I
Sbjct: 289 DRVLFMVDGTTTDAVDPAEIWPDFIARLPAKLPITVVRNKADVTGETLGISDVNGHSLIR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNE-ANYYLSCAIKIINQSE 427
LSA G++ LRN L + ++E +LAR RH+ +L E AN+ + ++I
Sbjct: 349 LSARTGEGVDDLRNHLKQSMGFDTSMEGG-FLARRRHLQALEEAANHLVQGKAQLIGAWA 407
Query: 428 KNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G------ELLAEELRLAQQNLSEITGEFTSDDLLGRIF 439
>gi|104784446|ref|YP_610944.1| tRNA modification GTPase TrmE [Pseudomonas entomophila L48]
gi|122401168|sp|Q1I2H5.1|MNME_PSEE4 RecName: Full=tRNA modification GTPase MnmE
gi|95113433|emb|CAK18161.1| tRNA modification GTPase [Pseudomonas entomophila L48]
Length = 456
Score = 338 bits (867), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 187/478 (39%), Positives = 279/478 (58%), Gaps = 28/478 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M T I IAT GRGGVGI+RLSG + + +T L PR A Y F +
Sbjct: 1 MNTVRETIAAIATAQGRGGVGIVRLSGPLASQAGQAITGRT---LTPRHAHYGPFRDADG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
++D+G+ ++F P+S+TGEDV+EL GHGGP+++ MLL CL++G RLA PGEF++
Sbjct: 58 LVLDEGIALFFPGPNSFTGEDVLELQGHGGPVVMDMLLQRCLQLG----CRLARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G FSK ++ L + LI LR +E +
Sbjct: 114 RAFLNDKLDLAQAEAIADLIEASSTQAARNALRSLQGAFSKRVHGLTEALIALRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + + + + L ++ +L + ++ + AL+R+G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDFLADGH-VLRMLDDVRSELSTVQREAGQGALLRDGMTVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N L G + AIVT IAGTTRD + + I I+ + DTAG+ D + + VEKIG
Sbjct: 233 LNQLAGREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTD-------DHVEKIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
+ER + +D ++ V D+ + +D + + P V + NK D SG
Sbjct: 286 VERALKAIGEADRVLLVVDSTAPEASDPFALWPEFLDQRPDVAKVTLIRNKADLSGEHVG 345
Query: 358 INYKNNIANIYLSASKR---IGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ ++ ++ ++ S R +G++LLR+ L + QT ESS + AR RH+ +L +A+
Sbjct: 346 MEQSDD-GHVTITLSAREDDMGLDLLRDHLKACMGYEQTAESS-FSARRRHLEALRQASA 403
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L +++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 404 HLEH-----GRAQLTLAGAGELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|190171352|gb|ACE63746.1| ThdF [Cronobacter turicensis]
Length = 439
Score = 338 bits (866), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 183/457 (40%), Positives = 274/457 (59%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SG+ + + V K K R+A Y F + +D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRVSGQQARDVAQAVLGKLPKA---RYADYLPFKDADGTALDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L I G+R+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGVRIAKPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWQEIEQA 288
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D TD + I P +P+ V NK D +G Q ++ N + I
Sbjct: 289 DRVLFMVDGTTTDATDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGLSEVNGHSLIR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA G+++LR+ L + ++E +LAR RH+ +L +A +L + +
Sbjct: 349 LSARTSDGVDVLRSHLKQSMGFDTSMEGG-FLARRRHLQALEDAANHLQQGKAQLLGAWA 407
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G-----ELLAEELRLAQQALSEITGEFTSDDLLGRIF 439
>gi|190171176|gb|ACE63658.1| ThdF [Citrobacter koseri]
Length = 439
Score = 338 bits (866), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 187/457 (40%), Positives = 271/457 (59%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRISGLKAREVAEAVLGKLPK---PRYADYLPFKDADGTALDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIARPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNGVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGIERAWQEIEQA 288
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D D + I P +P+ V NK D +G I+ N + +
Sbjct: 289 DRVLFMVDGTTTDAVDPAEIWPDFIARLPAKLPITVVRNKADITGETLGISEVNGHSLVR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA G+++LRN L + +E +LAR RH+ +L EA +L +S+
Sbjct: 349 LSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALAEAAEHLQQ-----GKSQL 402
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 403 LGAWAGELLAEELRLAQQALSEITGEFTSDDLLGRIF 439
>gi|330831723|ref|YP_004394675.1| tRNA modification GTPase mnmE [Aeromonas veronii B565]
gi|328806859|gb|AEB52058.1| tRNA modification GTPase mnmE [Aeromonas veronii B565]
Length = 453
Score = 338 bits (866), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 188/468 (40%), Positives = 272/468 (58%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGI+R+SG + IV K + R+A Y F + ++D+G+
Sbjct: 6 IVAQATAPGRGGVGIVRVSGPAAEQVAGIVLGKLPRV---RYAEYLPFRDEQGQVLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+ FKAP+S+TGEDV+EL GHGGP+I+ ML+ L+I G+R A PGEF++RAF+N+K
Sbjct: 63 ALLFKAPNSFTGEDVLELQGHGGPVIMDMLIRRILKID---GIRPARPGEFSERAFINDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+E AA+SAM SL G+FS I L++ LI LR +E + DFP+E
Sbjct: 120 LDLAQAEAIADLIEASSEQAARSAMHSLQGQFSSKIQQLVESLIRLRIYVEAAIDFPDEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L I +L + + K+ AL+R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LSDGKVAGDLYAIMSELDDVRGEAKQGALLREGMKVVIAGRPNAGKSSLLNALAGR 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D K VE+IGIER W E
Sbjct: 239 ESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTQDK-------VEQIGIERAWAE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D D + + + P NI + + NK D +G + +
Sbjct: 292 IEQADRVLFMVDGTTTDAVDPREIWPEFVDRLPKNIGLTVIRNKADLTGEDLAPSQELGH 351
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
A +SA +G+ LR L + E ++AR RH+ +L A L ++
Sbjct: 352 AVYRISAKTELGLPALREHLKACMGFQGNTEGG-FMARRRHLDALERAAERL-----LVA 405
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR E LS I G+ +++DLL IFS FCIGK
Sbjct: 406 KEQLEVFVAGELVAEELRLAQESLSEITGEFSSDDLLGRIFSSFCIGK 453
>gi|261378121|ref|ZP_05982694.1| tRNA modification GTPase TrmE [Neisseria cinerea ATCC 14685]
gi|269145579|gb|EEZ71997.1| tRNA modification GTPase TrmE [Neisseria cinerea ATCC 14685]
Length = 448
Score = 338 bits (866), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 201/473 (42%), Positives = 288/473 (60%), Gaps = 26/473 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M K+S I +AT PGRGGVG++R+SGKNL + + +C KT PR ATY+ F N
Sbjct: 1 MSDKDSTIAAVATAPGRGGVGVVRVSGKNLLPMAQALCGKTPL---PRVATYADFKDVNG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID GL+++F AP S+TGEDVIEL GHGGP+++ MLL+ CLE+G RLA PGEFTK
Sbjct: 58 EAIDNGLLLFFAAPASFTGEDVIELQGHGGPVVMEMLLNRCLELGA----RLAEPGEFTK 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q E + DLI+AS+ +AA+ A+ SL G FS+ I+ L+D L+ LR L+E +
Sbjct: 114 RAFLNDKLDLAQAEGVADLIDASSRTAARLALRSLKGDFSRRIHGLVDDLVTLRMLVEAT 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE+ + L D +L +++ + +++ ++ A++R G+NVVL+G PNVGKSSL
Sbjct: 174 LDFPEEDIDF-LEAADARGKLEGLRRSVDEVLANARQGAILREGMNVVLVGAPNVGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G +VAIVT IAGTTRD + + I I+ I DTAG +++ + VE+IG
Sbjct: 233 LNALAGDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAG-------LRETDDVVERIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKID-YSGHQKNIN 359
IER+ + +D+ + + D R + + + I+ P ++ I + +K D ++G
Sbjct: 286 IERSRKAVSEADVALVLVDPR-EGLNEKTRMILDTLPSDLKRIEIHSKSDLHTGAAVAFE 344
Query: 360 YKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCA 419
+ I LSA G+++LR TLL + Q +LAR RH+++L A L A
Sbjct: 345 TGADTV-IPLSAKTGAGLDVLRQTLLREV-GWQGEGEGLFLARARHLNALKAAQGELELA 402
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
N +EL+AE LR I G+ T +DLL IFS+FCIGK
Sbjct: 403 ALCGN-------GQIELLAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448
>gi|254237759|ref|ZP_04931082.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|126169690|gb|EAZ55201.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
Length = 455
Score = 338 bits (866), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 191/476 (40%), Positives = 270/476 (56%), Gaps = 25/476 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M I+ IAT GRGGVGI+R+SG + V + +QLK R A Y F
Sbjct: 1 MQAATETIVAIATAQGRGGVGIVRVSGPLAGQMAVAV---SGRQLKARHAHYGPFLDAGG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+ID+GL +YF P+S+TGEDV+EL GHGGP++L +L+ CLE+G R A PGEF++
Sbjct: 58 QVIDEGLSLYFPGPNSFTGEDVLELQGHGGPVVLDLLVQRCLELGA----RQARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI AS+E AA++A+ SL G+FS+ ++ L ++LI+LR +E +
Sbjct: 114 RAFLNDKLDLAQAEAIADLIEASSEQAARNALRSLQGEFSRRVHALTEQLISLRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + + + + L K++ +L + ++ + AL+R+G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDFLADGH-VLGLLEKVRTELSTVQREASQGALLRDGMTVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + VEKIG
Sbjct: 233 LNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTE-------DHVEKIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
+ER + +D ++ V DA + D + + P V + NK D S
Sbjct: 286 VERALKAIGEADRVLLVVDATAPEAADPFSLWPEFLDQRPEPGKVTLIRNKADLSTESIG 345
Query: 358 I-NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYL 416
+ + I LSA G+ LLR L + QT ES + AR RH+ +L A L
Sbjct: 346 LEESADGHVTITLSARTGAGLELLREHLKACMGFEQTAESG-FSARRRHLEALRLAGQAL 404
Query: 417 SCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + + EL+AEDLR + L I G T +DLL IFS FCIGK
Sbjct: 405 EHGYSQLIHNGAD-----ELLAEDLRQAQQHLGEITGAFTPDDLLGRIFSSFCIGK 455
>gi|431800003|ref|YP_007226906.1| tRNA modification GTPase TrmE [Pseudomonas putida HB3267]
gi|430790768|gb|AGA70963.1| tRNA modification GTPase TrmE [Pseudomonas putida HB3267]
Length = 456
Score = 338 bits (866), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 190/477 (39%), Positives = 277/477 (58%), Gaps = 26/477 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M T I IAT GRGGVGI+RLSG +++ +T L PR A Y F +
Sbjct: 1 MNTVRETIAAIATAQGRGGVGIVRLSGPLAAKAGQLITGRT---LTPRHAHYGPFRDEEG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
++D+G+ ++F P+S+TGEDV+EL GHGGP++L MLL C+++G RLA PGEF++
Sbjct: 58 LVLDEGIALFFPGPNSFTGEDVLELQGHGGPVVLDMLLQRCVQVG----CRLARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G+FSK ++ L D LI LR +E +
Sbjct: 114 RAFLNDKLDLAQAEAIADLIEASSSQAARNALRSLQGEFSKRVHFLTDALIALRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + + + + L ++ +L K+ ++ + AL+R+G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDFLADGH-VLAMLDTVRGELSKVQREAGQGALLRDGMTVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N L G + AIVT IAGTTRD + + I I+ + DTAG+ D + + VEKIG
Sbjct: 233 LNQLAGREAAIVTDIAGTTRDILREHIHIDGMPLHVVDTAGLRDTD-------DHVEKIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
+ER + +D ++ V D+ + +D + + P V + NK D SG +
Sbjct: 286 VERALKAIGEADRVLLVVDSTAPEASDPFALWPEFLDQRPDPAKVTLIRNKADLSGERVA 345
Query: 358 INY-KNNIANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYY 415
+ + I LSA G+ LLR+ L + QT ES + AR RH+ +L +A+ +
Sbjct: 346 LEQCDDGHVTITLSAKGDDAGLQLLRDHLKACMGYEQTAESG-FSARRRHLDALRQASEH 404
Query: 416 LSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L +++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 405 LEH-----GRAQLTLAGAGELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|190171172|gb|ACE63656.1| ThdF [Citrobacter sp. OD1158_06]
Length = 439
Score = 338 bits (866), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 187/457 (40%), Positives = 272/457 (59%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SG + E V K K PR+A Y F ++ + +D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRISGLKAREVAETVLGKLPK---PRYADYLPFKDEDGSALDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNSVISDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGIERAWQEIEQA 288
Query: 312 DIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D D I P +P+ V NK D +G ++ N + +
Sbjct: 289 DRVLFMVDGTTTDAVDPADIWPDFIARLPAKLPITVVRNKADITGETLGLSEVNGHSLVR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA G+++LRN L + +E +LAR RH+ +L EA +L +S+
Sbjct: 349 LSARTGEGVDVLRNHLKQSMGFETNMEGG-FLARRRHLQALAEAAEHLEQ-----GKSQL 402
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 403 LGAWAGELLAEELRLAQQNLSEITGEFTSDDLLGRIF 439
>gi|90194126|gb|ABD92624.1| ThdF [Haemophilus parasuis]
Length = 436
Score = 338 bits (866), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 188/459 (40%), Positives = 282/459 (61%), Gaps = 29/459 (6%)
Query: 13 TPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFK 72
TP GRGG+GI+R+SG + + V K K PR A Y F ++ ++D+G+ ++FK
Sbjct: 1 TPIGRGGIGILRVSGPIATEVAQAVLGKCPK---PRIADYLPFKDEDGTVLDQGIALFFK 57
Query: 73 APHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQ 132
APHS+TGEDV+EL GHGG +IL +LL+ L++ G+R+A GEF+++AFLNNKLDL Q
Sbjct: 58 APHSFTGEDVLELQGHGGQVILDLLLNRILKVK---GVRIARAGEFSEQAFLNNKLDLAQ 114
Query: 133 VEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELIL 192
EAI DLI+A++E AA+SA+ SL G+FS IN L+D +I LRT +E + DFP+E + L
Sbjct: 115 AEAIADLIDATSEQAARSALKSLQGEFSNKINELVDSVIYLRTYVEAAIDFPDEEIDF-L 173
Query: 193 NKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIV 252
+L +I +L + Q+ K+ ++R G+ VV+ G+PN GKSSL N+L G + AIV
Sbjct: 174 ADGKIEAKLNEIIAQLANVRQEAKQGTILREGMKVVIAGKPNAGKSSLLNALAGREAAIV 233
Query: 253 TSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSD 312
T IAGTTRD + + I I+ I DTAG +++ +EVEKIGI+R W E++ +D
Sbjct: 234 TDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVEKIGIKRAWDEIEQAD 286
Query: 313 IIIYVQDARYDKHTDFDKK---IIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYL 369
++ + D+ + F ++ + P NIPV + NK+D +G +++ +N I L
Sbjct: 287 HVLLMIDSNESQADSFQQEWATFLAKLPKNIPVTVIRNKVDLTGEAESLVQADNFTVIRL 346
Query: 370 SASKRIGINLLRNTLLDLIEKTQTIESSP---YLARERHIHSLNEANYYLSCAIKIINQS 426
SA ++G++LLR L +K+ +SS ++AR RH+ +L A +L + Q
Sbjct: 347 SAQTKVGVDLLREHL----KKSMGYQSSTEGGFIARRRHLVALETAAEHLERGHIQLTQF 402
Query: 427 EKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR LS I G+ T++DLL NIF
Sbjct: 403 YAG-----ELLAEELRMVQNALSEITGQFTSDDLLGNIF 436
>gi|190171252|gb|ACE63696.1| ThdF [Leclercia adecarboxylata ATCC 23216]
Length = 439
Score = 338 bits (866), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 185/457 (40%), Positives = 270/457 (59%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
A PPGRGGVGI+R+SG+ + E V K K PR+A Y F + +D+G+ ++F
Sbjct: 3 AHPPGRGGVGILRISGQKAREVAEAVLGKLPK---PRYADYLPFKDTDGTALDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIARPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNAVMSDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGIERAWQEIEQA 288
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D D I P N+P+ V NK D +G ++ N + I
Sbjct: 289 DRVLFMVDGTTTAAVDPAAIWPDFIARLPANLPITVVRNKADVTGETLGLSDVNGHSLIR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA G++ LR+ L + ++E +LAR RH+ +L EA +L + +
Sbjct: 349 LSARTGEGVDELRDHLKQSMGFDTSMEGG-FLARRRHLQALEEAAQHLDQGKAQLLGAWA 407
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G-----ELLAEELRLAQQALSEITGEFTSDDLLGRIF 439
>gi|423211634|ref|ZP_17198167.1| tRNA modification GTPase mnmE [Aeromonas veronii AER397]
gi|404613293|gb|EKB10326.1| tRNA modification GTPase mnmE [Aeromonas veronii AER397]
Length = 453
Score = 337 bits (865), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 188/468 (40%), Positives = 272/468 (58%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGI+R+SG + IV K + R+A Y F + ++D+G+
Sbjct: 6 IVAQATAPGRGGVGIVRVSGPAAEQVAGIVLGKLPRV---RYAEYLPFRDEQGQVLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+ FKAP+S+TGEDV+EL GHGGP+I+ ML+ L+I G+R A PGEF++RAF+N+K
Sbjct: 63 ALLFKAPNSFTGEDVLELQGHGGPVIMDMLIRRILKID---GIRPARPGEFSERAFINDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+E AA+SAM SL G+FS I L++ LI LR +E + DFP+E
Sbjct: 120 LDLAQAEAIADLIEASSEQAARSAMHSLQGQFSSKIQQLVESLIRLRIYVEAAIDFPDEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L I +L + + K+ AL+R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LSDGKVAGDLYAIMSELDDVRGEAKQGALLREGMKVVIAGRPNAGKSSLLNALAGR 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D K VE+IGIER W E
Sbjct: 239 ESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTQDK-------VEQIGIERAWAE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D D + + + P NI + + NK D +G + +
Sbjct: 292 IEQADRVLFMVDGTTTDAVDPREIWPEFVDRLPKNIGLTVIRNKADLTGEDLAPSQELGH 351
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
A +SA +G+ LR L + E ++AR RH+ +L A L ++
Sbjct: 352 AVYRISAKTELGLPALREHLKACMGFQGNTEGG-FMARRRHLDALERAAERL-----LVA 405
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR E LS I G+ +++DLL IFS FCIGK
Sbjct: 406 KEQLEVFVAGELVAEELRLAQESLSEITGEFSSDDLLGRIFSSFCIGK 453
>gi|164685874|ref|ZP_01947569.2| tRNA modification GTPase TrmE [Coxiella burnetii 'MSU Goat Q177']
gi|165922497|ref|ZP_02219668.1| tRNA modification GTPase TrmE [Coxiella burnetii Q321]
gi|164601391|gb|EAX31811.2| tRNA modification GTPase TrmE [Coxiella burnetii 'MSU Goat Q177']
gi|165916702|gb|EDR35306.1| tRNA modification GTPase TrmE [Coxiella burnetii Q321]
Length = 452
Score = 337 bits (865), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 199/469 (42%), Positives = 289/469 (61%), Gaps = 29/469 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I ATP GRGG+G++R+SG+ +I + + K PR+AT+ F + ++ID+G+
Sbjct: 9 IAAQATPSGRGGIGVVRVSGEKTKAIAQKILGCVPK---PRYATFVKFR-DSGSVIDEGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P+S+TGEDV+ELHGHGGP+++ LL++ L+ G R A PGEF++RAFLNNK
Sbjct: 65 ALYFPKPNSFTGEDVLELHGHGGPVVMDRLLNTVLKAGA----RQARPGEFSERAFLNNK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EA+ DLINAS+E AA+SAM SL G+FSK I+ L+D LI LR IE S DFPEE
Sbjct: 121 IDLAQAEAVADLINASSEQAARSAMRSLQGEFSKRIHQLVDALIQLRMYIEASIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + ++ L + ++ +I + K+ AL+R G+ VV+ G+PNVGKSSL N L G
Sbjct: 181 IDFLADER-IKETLENLTHQVQEIEKTAKQGALLREGITVVIAGEPNVGKSSLLNLLSGQ 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD I ++I I+ + DTAG+ ++ +++ VEK G+ RT
Sbjct: 240 ETAIVTDIAGTTRDIIRESIHIDGLPIHVVDTAGL-----RLTEDV--VEKEGVRRTQKA 292
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNFPMN---IPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D+++ + DA DF K I + F N IP + + NKID G K
Sbjct: 293 VQQADLLLLMIDASKPTE-DFKKIIAQWFSENDNKIPTLIIENKIDLIGEAPRKENK-EY 350
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCA-IKII 423
+I LS R G+ LL+N L + T E++ ++AR RH ++ A+ +L A ++
Sbjct: 351 PHIKLSVKTRAGVELLKNHLKNTAGFEATHENN-FIARRRHCDAIARASAFLKNANNHLL 409
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
NQ K EL+AEDL+ LS I G+ T++DLL IFS+FCIGK
Sbjct: 410 NQ------KAGELVAEDLKLAQNALSEITGEFTSDDLLGKIFSEFCIGK 452
>gi|190171194|gb|ACE63667.1| ThdF [Enterobacter cowanii]
Length = 439
Score = 337 bits (865), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 184/457 (40%), Positives = 272/457 (59%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SG + + V K K PR+A Y +F + + +D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRISGLKARDVAQAVLGKLPK---PRYADYLAFQDADGSALDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIAKPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNNVISDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWQEIEQA 288
Query: 312 DIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D D I P +P+ V NK D +G Q I+ NN + +
Sbjct: 289 DRVLFMVDGTTTDAVDPADIWPDFIARLPAKLPITVVRNKADVTGEQPGISEVNNHSLVR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA G+++LR L + ++E +LAR RH+ +L A +L + +
Sbjct: 349 LSARTNEGVDVLRQHLKQSMGFDTSMEGG-FLARRRHLQALEMAAEHLQQGKAQLLGAWA 407
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G-----ELLAEELRLAQQSLSEITGEFTSDDLLGRIF 439
>gi|423198932|ref|ZP_17185515.1| tRNA modification GTPase mnmE [Aeromonas hydrophila SSU]
gi|404629780|gb|EKB26508.1| tRNA modification GTPase mnmE [Aeromonas hydrophila SSU]
Length = 453
Score = 337 bits (865), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 189/468 (40%), Positives = 270/468 (57%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGI+R+SG + EIV K + R+A Y F + +D+G+
Sbjct: 6 IVAQATAPGRGGVGIVRVSGPAAEQVAEIVLGKLPRV---RYAEYLPFRDEQGQPLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+ FKAP+S+TGEDV+EL GHGGP+I+ ML+ L+I GLR A PGEF++RAF+N+K
Sbjct: 63 ALLFKAPNSFTGEDVLELQGHGGPVIMDMLVRRILQIK---GLRPARPGEFSERAFMNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+E AA+SAM SL G+FS I L++ L LR +E + DFP+E
Sbjct: 120 LDLAQAEAIADLIEASSEQAARSAMHSLQGQFSGKIQQLVESLTRLRIYVEAAIDFPDEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L I +L + + K+ AL+R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LSDGKVAGDLYAIMDELDAVRGEAKQGALLREGMKVVIAGRPNAGKSSLLNALAGR 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D K VE+IGIER W E
Sbjct: 239 ESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTQDK-------VEQIGIERAWAE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D D + + + P I + V NK D +G + +
Sbjct: 292 IEQADRVLFMVDGTTTAAVDPREIWPEFVDRLPKKIGLTVVRNKADLTGEDLAPSQELGH 351
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
A +SA +G+ LR L + E ++AR RH+ +L A L ++
Sbjct: 352 AVYRISAKTELGLPALREHLKACMGFQGNTEGG-FMARRRHLDALERAAERL-----LVA 405
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR E LS I G+ +++DLL IFS FCIGK
Sbjct: 406 KEQLEVFVAGELVAEELRLAQESLSEITGEFSSDDLLGRIFSSFCIGK 453
>gi|15600760|ref|NP_254254.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa PAO1]
gi|107104668|ref|ZP_01368586.1| hypothetical protein PaerPA_01005747 [Pseudomonas aeruginosa PACS2]
gi|218894669|ref|YP_002443539.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa LESB58]
gi|355650948|ref|ZP_09056376.1| tRNA modification GTPase mnmE [Pseudomonas sp. 2_1_26]
gi|386061752|ref|YP_005978274.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa M18]
gi|392987291|ref|YP_006485878.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa DK2]
gi|416856647|ref|ZP_11912211.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa 138244]
gi|418587887|ref|ZP_13151908.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa MPAO1/P1]
gi|418591606|ref|ZP_13155502.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa MPAO1/P2]
gi|419757368|ref|ZP_14283711.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa PADK2_CF510]
gi|420142740|ref|ZP_14650326.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa CIG1]
gi|421183693|ref|ZP_15641142.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa E2]
gi|421520140|ref|ZP_15966811.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa PAO579]
gi|424943626|ref|ZP_18359389.1| putative GTPase for tRNA modification and thiophene and furan
oxidation [Pseudomonas aeruginosa NCMG1179]
gi|451983658|ref|ZP_21931934.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pseudomonas
aeruginosa 18A]
gi|14195275|sp|Q9HT07.1|MNME_PSEAE RecName: Full=tRNA modification GTPase MnmE
gi|9951908|gb|AAG08952.1|AE004968_6 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
gi|218774898|emb|CAW30717.1| putative GTPase for tRNA modification and thiophene and furan
oxidation [Pseudomonas aeruginosa LESB58]
gi|334841635|gb|EGM20260.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa 138244]
gi|346060072|dbj|GAA19955.1| putative GTPase for tRNA modification and thiophene and furan
oxidation [Pseudomonas aeruginosa NCMG1179]
gi|347308058|gb|AEO78172.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa M18]
gi|354826472|gb|EHF10684.1| tRNA modification GTPase mnmE [Pseudomonas sp. 2_1_26]
gi|375041399|gb|EHS34100.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa MPAO1/P1]
gi|375049665|gb|EHS42156.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa MPAO1/P2]
gi|384396167|gb|EIE42587.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa PADK2_CF510]
gi|392322796|gb|AFM68176.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa DK2]
gi|403244516|gb|EJY58386.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa CIG1]
gi|404346059|gb|EJZ72411.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa PAO579]
gi|404539787|gb|EKA49234.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa E2]
gi|451758604|emb|CCQ84457.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pseudomonas
aeruginosa 18A]
gi|453044717|gb|EME92439.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa PA21_ST175]
Length = 455
Score = 337 bits (865), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 192/476 (40%), Positives = 269/476 (56%), Gaps = 25/476 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M I+ IAT GRGGVGI+R+SG + V + +QLK R A Y F
Sbjct: 1 MQAATETIVAIATAQGRGGVGIVRVSGPLAGQMAVAV---SGRQLKARHAHYGPFLDAGG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+ID+GL +YF P+S+TGEDV+EL GHGGP++L +L+ CLE+G R A PGEF++
Sbjct: 58 QVIDEGLSLYFPGPNSFTGEDVLELQGHGGPVVLDLLVQRCLELGA----RQARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI AS+E AA++A+ SL G+FS+ ++ L ++LI+LR +E +
Sbjct: 114 RAFLNDKLDLAQAEAIADLIEASSEQAARNALRSLQGEFSRRVHALTEQLISLRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + + + + L K++ +L + ++ + AL+R+G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDFLADGH-VLGLLEKVRTELSTVQREASQGALLRDGMTVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + VEKIG
Sbjct: 233 LNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTE-------DHVEKIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
+ER + +D ++ V DA + D + + P V + NK D S
Sbjct: 286 VERALKAIGEADRVLLVVDATAPEAADPFSLWPEFLDQRPEPGKVTLIRNKADLSTESIG 345
Query: 358 I-NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYL 416
+ + I LSA G+ LLR L + QT ES + AR RH+ +L A L
Sbjct: 346 LEESADGHVTITLSARTGAGLELLREHLKACMGFEQTAESG-FSARRRHLEALRLAGQAL 404
Query: 417 SCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
S+ EL+AEDLR + L I G T +DLL IFS FCIGK
Sbjct: 405 EH-----GHSQLIHNGAGELLAEDLRQAQQHLGEITGAFTPDDLLGRIFSSFCIGK 455
>gi|169635752|emb|CAQ16330.1| t-RNA modification GTPase protein [Brevibacterium linens]
Length = 457
Score = 337 bits (865), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 188/481 (39%), Positives = 284/481 (59%), Gaps = 33/481 (6%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKK-TKKQLKPRFATYSSFFCKN 59
M I +AT GRGGVGI+R+SG + I K ++++LKPR+A Y F+ +N
Sbjct: 1 MSVAAETIAAVATARGRGGVGIVRISGP----LASIAAKAFSERELKPRYAHYGPFYGEN 56
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFT 119
++D+G+ +YF P+S+TGEDV+EL GHGGPI+L MLL C+++G RLA PGEF+
Sbjct: 57 REVLDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCIQLG----CRLARPGEFS 112
Query: 120 KRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEF 179
+RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G FS+ ++ L ++LI LR +E
Sbjct: 113 ERAFLNDKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVHNLTEQLIGLRIYVEA 172
Query: 180 SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
+ DFPEE + + + + L K++++L ++++ + AL+R+G+ VV+ G+PN GKSS
Sbjct: 173 AIDFPEEEIDFLADGH-VLGMLDKVRQELSTVMREAGQGALLRDGMTVVIAGRPNAGKSS 231
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + ++VEKI
Sbjct: 232 LLNALAGREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTD-------DQVEKI 284
Query: 300 GIERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356
G++R + +D ++ V DA + D + ++ P V + NK D +G
Sbjct: 285 GVQRALKAIGEADRVLLVVDATAPEADDPFALWPEFLQQRPDPAKVTLIRNKADLTGEDI 344
Query: 357 NINYKNNIANIYLSASKRI-----GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNE 411
+ ++ ++ +S S R G+ LLR+ L + QT ESS + AR RH+ +L
Sbjct: 345 RLQVCDD-GHVTISLSARSTDAGDGLELLRDHLKACMGYEQTSESS-FSARRRHLEALRH 402
Query: 412 ANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIG 471
A+ L +++ EL+AEDLR L I G + +DLL IFS CIG
Sbjct: 403 ASDALEH-----GRAQLTLAGAGELLAEDLRQAQHSLGEITG-AFRDDLLGRIFSSLCIG 456
Query: 472 K 472
K
Sbjct: 457 K 457
>gi|190171190|gb|ACE63665.1| ThdF [Enterobacter cancerogenus]
Length = 439
Score = 337 bits (865), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 188/458 (41%), Positives = 271/458 (59%), Gaps = 25/458 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRISGLKAREVAEAVLGKLPK---PRYADYLPFKDADGTSLDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIAKPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNQVMNDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGIERAWQEIEQA 288
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D D + I P +P+ V NK D +G I+ N + I
Sbjct: 289 DRVLFMVDGTTTDAVDPAEIWPDFIARLPAKLPITVVRNKADVTGETLGISDVNGHSLIR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCA-IKIINQSE 427
LSA G+ LRN L + ++E +LAR RH+ +L EA +L ++I
Sbjct: 349 LSARTGEGVEALRNHLKQSMGFDTSMEGG-FLARRRHLQALEEAARHLEQGKAQLIGAWA 407
Query: 428 KNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G------ELLAEELRLAQQNLSEITGEFTSDDLLGRIF 439
>gi|29655207|ref|NP_820899.1| tRNA modification GTPase TrmE [Coxiella burnetii RSA 493]
gi|209363710|ref|YP_001423624.2| tRNA modification GTPase TrmE [Coxiella burnetii Dugway 5J108-111]
gi|29542479|gb|AAO91413.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
[Coxiella burnetii RSA 493]
gi|207081643|gb|ABS78334.2| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
[Coxiella burnetii Dugway 5J108-111]
Length = 473
Score = 337 bits (865), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 200/469 (42%), Positives = 289/469 (61%), Gaps = 29/469 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I ATP GRGG+G++R+SG+ +I + + K PR+AT+ F + ++ID+G+
Sbjct: 30 IAAQATPSGRGGIGVVRVSGEKTKAIAQKILGCVPK---PRYATFVKFR-DSGSVIDEGI 85
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P+S+TGEDV+ELHGHGGP+++ LL++ L+ G R A PGEF++RAFLNNK
Sbjct: 86 ALYFPKPNSFTGEDVLELHGHGGPVVMDRLLNTVLKAGA----RQARPGEFSERAFLNNK 141
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EA+ DLINAS+E AA+SAM SL G+FSK I+ L+D LI LR IE S DFPEE
Sbjct: 142 IDLAQAEAVADLINASSEQAARSAMRSLQGEFSKRIHQLVDALIQLRMYIEASIDFPEEE 201
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + ++ L + ++ +I + K+ AL+R G+ VV+ G+PNVGKSSL N L G
Sbjct: 202 IDFLADER-IKETLENLTHQVQEIEKTAKQGALLREGITVVIAGEPNVGKSSLLNLLSGQ 260
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD I ++I I+ + DTAG+ ++ +++ VEK G+ RT
Sbjct: 261 ETAIVTDIAGTTRDIIRESIHIDGLPIHVVDTAGL-----RLTEDV--VEKEGVRRTQKA 313
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNFPMN---IPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D+++ + DA DF K I + F N IP + V NKID G K
Sbjct: 314 VQQADLLLLMIDASKPTE-DFKKIIAQWFSENDNKIPTLIVENKIDLIGEAPRKENK-EY 371
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCA-IKII 423
+I LS R G+ LL+N L + T E++ ++AR RH ++ A+ +L A ++
Sbjct: 372 PHIKLSVKTRAGVELLKNHLKNTAGFEATHENN-FIARRRHCDAIARASAFLKNANNHLL 430
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
NQ K EL+AEDL+ LS I G+ T++DLL IFS+FCIGK
Sbjct: 431 NQ------KAGELVAEDLKLAQNALSEITGEFTSDDLLGKIFSEFCIGK 473
>gi|190171178|gb|ACE63659.1| ThdF [Citrobacter koseri]
Length = 439
Score = 337 bits (865), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 187/457 (40%), Positives = 271/457 (59%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRISGLKAREVAEAVLGKLPK---PRYADYLPFKDADGTALDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIARPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNGVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGIERAWQEIEQA 288
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D D + I P +P+ V NK D +G I+ N + +
Sbjct: 289 DRVLFMVDGTTTDAVDPAEIWPDFIARLPAKLPITVVRNKADITGETLGISEVNGHSLVR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA G+++LRN L + +E +LAR RH+ +L EA +L +S+
Sbjct: 349 LSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALAEAAKHLQQ-----GKSQL 402
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 403 LGAWAGELLAEELRLAQQALSEITGEFTSDDLLGRIF 439
>gi|190171174|gb|ACE63657.1| ThdF [Citrobacter koseri]
Length = 439
Score = 337 bits (865), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 187/457 (40%), Positives = 271/457 (59%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRISGLKAREVAEAVLGKLPK---PRYADYLPFKDADGTALDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIARPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNNLVEALTHLRIYVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNGVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGIERAWQEIEQA 288
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D D + I P +P+ V NK D +G I+ N + +
Sbjct: 289 DRVLFMVDGTTTDAVDPAEIWPDFIARLPAKLPITVVRNKADITGETLGISEVNGHSLVR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA G+++LRN L + +E +LAR RH+ +L EA +L +S+
Sbjct: 349 LSARTGEGVDVLRNHLKQSMGFDTNMEGG-FLARRRHLQALAEAAEHLQQ-----GKSQL 402
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 403 LGAWAGELLAEELRLAQQALSEITGEFTSDDLLGRIF 439
>gi|345876689|ref|ZP_08828454.1| inner membrane protein oxaA [endosymbiont of Riftia pachyptila
(vent Ph05)]
gi|344226289|gb|EGV52627.1| inner membrane protein oxaA [endosymbiont of Riftia pachyptila
(vent Ph05)]
Length = 475
Score = 337 bits (865), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 188/466 (40%), Positives = 277/466 (59%), Gaps = 25/466 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I +ATPPG GGVGI+R+SG + + E + K + PR A+Y F ++ ++ID G+
Sbjct: 34 IAAVATPPGSGGVGIVRVSGADCKRVAEALAGKLPQ---PRLASYRPFHDQDGSVIDTGI 90
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++YF APHS+TGEDV+E HGG +IL +LL L++G +R A GEFT+RAFLN K
Sbjct: 91 LLYFPAPHSFTGEDVLEFQAHGGAVILDLLLQRILDLG----IRPARAGEFTERAFLNGK 146
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EA+ DLI A T SAA+ A +L G FS+ ++ L+++LI LR +E + DFPEE
Sbjct: 147 IDLAQAEAVADLIEARTVSAARLAGRTLQGVFSERVHALVEQLIELRIYVESAIDFPEEE 206
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ N+L + ++L ++IQ L+R+G+ +V+ G+PN GKSSL N L G
Sbjct: 207 IDF-LSDGRVANDLKTLTEQLAQLIQSANTGRLLRDGMTLVIAGRPNAGKSSLLNQLSGE 265
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT I GTTRD + + IQI+ I DTAGI D + E+E GI R E
Sbjct: 266 ERAIVTDIPGTTRDLLREQIQIDGLPLHIIDTAGIRDSEDPV-----EIE--GIRRARQE 318
Query: 308 LKNSDIIIYVQDARYD-KHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIAN 366
++ +D I+++ D + D +H + D+ + P +P+ V NKID + +I N I
Sbjct: 319 IEQADRILWIFDHQTDPQHLELDRATL---PAGVPLTLVRNKIDLTELAPSIKSNNGITE 375
Query: 367 IYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQS 426
+ LSA G+ LLR L + ++ E ++AR RH+ +L A + A++ NQ
Sbjct: 376 LALSAKSGAGMELLRQHLKQSVGFGESSEGE-FMARRRHLDALQRA----ATALERGNQQ 430
Query: 427 EKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
K F E++AE+LR + L+ I G+ +DLL IFS FCIGK
Sbjct: 431 FKQFTAG-EILAEELRQAQQALNEITGEFCADDLLGRIFSSFCIGK 475
>gi|423202978|ref|ZP_17189556.1| tRNA modification GTPase mnmE [Aeromonas veronii AER39]
gi|404614234|gb|EKB11237.1| tRNA modification GTPase mnmE [Aeromonas veronii AER39]
Length = 453
Score = 337 bits (865), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 188/468 (40%), Positives = 272/468 (58%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGI+R+SG + IV K + R+A Y F + ++D+G+
Sbjct: 6 IVAQATAPGRGGVGIVRVSGPAAEQVAGIVLGKLPRV---RYAEYLPFKDEQGQVLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+ FKAP+S+TGEDV+EL GHGGP+I+ ML+ L+I G+R A PGEF++RAF+N+K
Sbjct: 63 ALLFKAPNSFTGEDVLELQGHGGPVIMDMLIRRILKID---GIRPARPGEFSERAFINDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+E AA+SAM SL G+FS I L++ LI LR +E + DFP+E
Sbjct: 120 LDLAQAEAIADLIEASSEQAARSAMHSLQGQFSSKIQQLVESLIRLRIYVEAAIDFPDEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L I +L + + K+ AL+R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LSDGKVAGDLYSIMSELDDVRGEAKQGALLREGMKVVIAGRPNAGKSSLLNALAGR 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D K VE+IGIER W E
Sbjct: 239 ESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTQDK-------VEQIGIERAWAE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D D + + + P NI + + NK D +G + +
Sbjct: 292 IEQADRVLFMVDGTTTDAVDPREIWPEFVDRLPKNIGLTVIRNKADLTGEDLAPSQELGH 351
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
A +SA +G+ LR L + E ++AR RH+ +L A L ++
Sbjct: 352 AVYRISAKTELGLPALREHLKACMGFQGNTEGG-FMARRRHLDALERAAERL-----LVA 405
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR E LS I G+ +++DLL IFS FCIGK
Sbjct: 406 KEQLEVFVAGELVAEELRLAQESLSEITGEFSSDDLLGRIFSSFCIGK 453
>gi|406939331|gb|EKD72372.1| hypothetical protein ACD_45C00690G0008 [uncultured bacterium]
Length = 450
Score = 337 bits (864), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 194/469 (41%), Positives = 276/469 (58%), Gaps = 30/469 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ TP GRGGV IIR+SG + SI + + KK K R+AT+SSFF +++ ID+G+
Sbjct: 8 IVASTTPQGRGGVAIIRVSGSLVSSIAKEILKKIPK---ARYATFSSFFDSSDHAIDQGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF AP+S+TGED++EL GHGGP+++ +L+ LE+G RLA PGEF++RAFLN+K
Sbjct: 65 ALYFPAPNSFTGEDILELQGHGGPVVVDLLIQRILELGA----RLAQPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+AS+ AAK+A+ SL G+FSK I+ L++ L LR +E + DF EE
Sbjct: 121 MDLAQAEAIADLIDASSAQAAKNALRSLQGEFSKKIHTLVEALTQLRMYVEAAIDFVEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L L I K+L + + +L+R+G+ V+ GQPNVGKSSL N L G
Sbjct: 181 IDF-LKDQQVITRLTSIVKELEAVQTSAAQGSLLRDGITAVIAGQPNVGKSSLLNQLSGK 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT I GTTRD + + I I+ I DTAG+ + N + VE+IGI R E
Sbjct: 240 ESAIVTDIPGTTRDVLREHILIDSLPIHIVDTAGLRESN-------DHVEQIGIRRAEKE 292
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQKNINYKNN 363
+ +D+I++V DA TD D + +F P + I V NKID + + ++
Sbjct: 293 IVKADLILFVIDA-----TDNDSGCLSDFLDPIPEQVACITVRNKIDLTAELPRVLQQDK 347
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA GI LL+N + + T S + AR RH+ +L A +L + +
Sbjct: 348 QTIISLSAKSGDGIELLKNQ-IKIYAGFNTNTESHFSARRRHLDALARAKKFLLSGQRQL 406
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AEDLR LS I G+ +++DLL IF+ FCIGK
Sbjct: 407 QDYQAG-----ELLAEDLRLAQNVLSEITGQFSSDDLLGRIFASFCIGK 450
>gi|414071437|ref|ZP_11407406.1| tRNA modification GTPase MnmE [Pseudoalteromonas sp. Bsw20308]
gi|410806157|gb|EKS12154.1| tRNA modification GTPase MnmE [Pseudoalteromonas sp. Bsw20308]
Length = 454
Score = 337 bits (864), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 195/464 (42%), Positives = 275/464 (59%), Gaps = 23/464 (4%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
AT PGRGGVGIIR+SG S+ E V K K R+A Y F +D+G+ IYF
Sbjct: 11 ATAPGRGGVGIIRVSGSLAKSVAEKVVGKIPK---VRYADYVPFKSLAGEQLDQGIAIYF 67
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP++L MLL EI K G+RLA PGEF++RAF+N+KLDL
Sbjct: 68 AGPNSFTGEDVLELQGHGGPVVLDMLLK---EISKIEGVRLAKPGEFSERAFMNDKLDLT 124
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLINA++E AAKSA+ SL G+FSK I L++K+I+LR +E + DFP+E +
Sbjct: 125 QAEAIADLINATSEQAAKSALQSLQGEFSKHIETLVEKVIHLRMYVEAAIDFPDEEIDF- 183
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L I +L + Q K+ +++R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 184 LSDGKVSGDLDAIITQLNTVTNQAKQGSIMREGMRVVIAGRPNAGKSSLLNALAGREAAI 243
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG ++++ + VE+IGIER W E+ +
Sbjct: 244 VTEIAGTTRDVLREHIHIDGMPLHIIDTAG-------LRESPDRVEQIGIERAWDEINQA 296
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D TD K + + P + V + NK D SG + + I
Sbjct: 297 DRVLFMLDGTDTTDTDPHKIWPEFMAKLPEGMGVTVIRNKADLSGDIVGMEQEQQYPVIS 356
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA GI L+R L I E ++AR RH+ +L A ++L +++
Sbjct: 357 LSAKNADGIELVREHLKACIGFQGATEGG-FMARRRHLDALESAAHHLDT-----GKTQL 410
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
E++AE+LR + L+ I G+ T++DLL IFS FCIGK
Sbjct: 411 EMHIAGEILAEELRLTQQYLNEITGEFTSDDLLGKIFSSFCIGK 454
>gi|339481913|ref|YP_004693699.1| tRNA modification GTPase mnmE [Nitrosomonas sp. Is79A3]
gi|338804058|gb|AEJ00300.1| tRNA modification GTPase mnmE [Nitrosomonas sp. Is79A3]
Length = 451
Score = 337 bits (864), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 201/469 (42%), Positives = 285/469 (60%), Gaps = 28/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IATPPG+GG+G+IR+SG+NL + E + + PR+A+ F + IID+G+
Sbjct: 7 IAAIATPPGKGGIGVIRISGRNLKHLAETLLGNLPE---PRYASLRKFLDTDGQIIDQGI 63
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF AP+SYTGED++EL GHGGP ++++LL+ CL S G RLA PGEFT RA+LNNK
Sbjct: 64 ALYFPAPNSYTGEDILELQGHGGPAVMNLLLNQCL----SAGARLAQPGEFTLRAYLNNK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DLIQ E++ +I AST AA+ A+ SL G+FS I L+ LI LR LIE DFPE+
Sbjct: 120 IDLIQAESVAAIIEASTYEAARCAINSLQGQFSARIEELVSLLITLRMLIEAILDFPEDE 179
Query: 188 QE--LILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLV 245
+ +L + N+ + +L +I ++ L++ G+ +VL+G PNVGKSSL N LV
Sbjct: 180 IDNLQVLQIKERLND---VHAQLEQIFAAARQGNLLQEGIKIVLVGAPNVGKSSLLNQLV 236
Query: 246 GSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTW 305
D AIVT I GTTRD I +TI I I DTAG +++ + VE+ GIERT
Sbjct: 237 EDDAAIVTDIPGTTRDTIQRTIAIAGVPIHIIDTAG-------LRETSDVVEQKGIERTH 289
Query: 306 VELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIA 365
+KN+++++ + D+ D +I K P + P+I V+NKID Q I +
Sbjct: 290 AAIKNANMVLQLVDSN-QHQPDMKDQIQKCIPFDKPLITVFNKIDLLNEQPRIEGEKTDI 348
Query: 366 NIYLSASKRIGINLLRNTLLDLI--EKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
+I+LSA GI LLR +LD++ + Q E ++AR+RH+ +L +A +L A
Sbjct: 349 SIHLSAKTGAGIELLRQKILDIVGWQFNQAGEGV-FMARQRHLEALKQAKAHLDNA---- 403
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q+ E LEL+AE+LR LS+I G+ T +DLL IFS FCIGK
Sbjct: 404 -QTFTENESQLELLAEELRLAQYALSAITGQFTADDLLGEIFSHFCIGK 451
>gi|190171312|gb|ACE63726.1| ThdF [Cronobacter sakazakii]
Length = 439
Score = 337 bits (864), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 184/457 (40%), Positives = 273/457 (59%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SG+ + + V K K R+A Y F + +D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRVSGQQARDVAQAVLGKLPKA---RYADYLPFKDADGTALDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWQEIEQA 288
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D TD + I P +P+ V NK D +G Q I N + I
Sbjct: 289 DRVLFMVDGTTTDATDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGIIEVNGHSLIR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA G+++LRN L + ++E +LAR RH+ +L +A +L + +
Sbjct: 349 LSARTNEGVDVLRNHLKQSMGFDTSMEGG-FLARRRHLQALEDAANHLQQGKAQLLGAWA 407
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G-----ELLAEELRLAQQALSEITGEFTSDDLLGRIF 439
>gi|90194110|gb|ABD92616.1| ThdF [Actinobacillus pleuropneumoniae serovar 1]
Length = 436
Score = 337 bits (864), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 192/460 (41%), Positives = 281/460 (61%), Gaps = 31/460 (6%)
Query: 13 TPPGRGGVGIIRLSGKNLWSIVEIVCKKT-KKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
TP GRGGVGI+R+SG + + V K+ K+LKPR A Y F ++ ++D+G+ ++F
Sbjct: 1 TPIGRGGVGILRISG----PLAQEVAKEVLGKELKPRLANYLPFKEQDGTVLDQGIALFF 56
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
KAP+S+TGEDV+EL GHGG +IL +LL L I G+R+A GEF+++AFLN+KLDL
Sbjct: 57 KAPNSFTGEDVLELQGHGGQVILDILLKRILTIK---GIRIARAGEFSEQAFLNDKLDLA 113
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+A++E AA+SA+ SL G+FS IN L+D +I LRT +E + DFP+E +
Sbjct: 114 QAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEEIDF- 172
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L L I ++L + ++ K+ A++R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 173 LADGKIEGHLNDIIRQLNGVRKEAKQGAILREGMKVVIAGRPNAGKSSLLNALAGREAAI 232
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT+IAGTTRD + + I I+ I DTAG+ + N +EVEKIGI+R W E++ +
Sbjct: 233 VTNIAGTTRDVLREHIHIDGMPLHIIDTAGLREAN-------DEVEKIGIQRAWDEIEQA 285
Query: 312 DIIIYVQDARYDKHTDFDKK---IIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++ + D+ F + + P NIPV + NK+D SG + + + I
Sbjct: 286 DHVLLMIDSTEQTAEAFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIR 345
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSP---YLARERHIHSLNEANYYLSCAIKIINQ 425
LSA ++G++LLR L +K+ +SS +LAR RH+ +L A +L + Q
Sbjct: 346 LSAQTKVGVDLLREHL----KKSMGYQSSTEGGFLARRRHLQALETAAEHLERGHIQLTQ 401
Query: 426 SEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR LS I G+ T++DLL NIF
Sbjct: 402 FFAG-----ELLAEELRMVQNALSEITGQFTSDDLLGNIF 436
>gi|374334217|ref|YP_005090904.1| tRNA modification GTPase TrmE [Oceanimonas sp. GK1]
gi|372983904|gb|AEY00154.1| tRNA modification GTPase TrmE [Oceanimonas sp. GK1]
Length = 453
Score = 337 bits (864), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 186/473 (39%), Positives = 278/473 (58%), Gaps = 27/473 (5%)
Query: 5 NSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIID 64
N I+ AT PGRGGVGIIR+SG ++ + V + + R+A Y F + ++D
Sbjct: 3 NDTIVAQATAPGRGGVGIIRVSGPQAEAVAQAVLGRVPQV---RYADYLPFKDEQGTVLD 59
Query: 65 KGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFL 124
+G+ + FK PHS+TGEDV+EL GHGGP++L ML+ L + GLR A GEF++RAFL
Sbjct: 60 QGIALLFKGPHSFTGEDVLELQGHGGPVVLDMLVRRILAL---PGLRPARAGEFSERAFL 116
Query: 125 NNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFP 184
N+KLDL Q EAI DLI AS+E AA+SA+ SL G+FS ++ L++ L +LR +E + DFP
Sbjct: 117 NDKLDLAQAEAIADLIEASSEQAARSALQSLQGEFSTRVHGLVEALTHLRIYVEAAIDFP 176
Query: 185 EENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSL 244
+E + L+ EL I +L ++ ++ ++ A++R G+ VV+ G+PN GKSSL N+L
Sbjct: 177 DEEVDF-LSDGKIAGELYGIMDRLTEVQREARQGAIMREGMKVVIAGRPNAGKSSLLNAL 235
Query: 245 VGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304
G + AIVT IAGTTRD + + I ++ I DTAG +++ + VE+IGIER
Sbjct: 236 AGKESAIVTDIAGTTRDVLREYIHLDGMPLHIIDTAG-------LREASDAVERIGIERA 288
Query: 305 WVELKNSDIIIYVQD-----ARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNIN 359
W E++ +D I+++ D AR+ K D + P +I + V NK D +G ++
Sbjct: 289 WAEIEQADRILFMVDGTTTQARHPK--DIWPDFVDRLPTHIGLTVVRNKADLTGEPLIVS 346
Query: 360 YKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCA 419
+SA G+ L+ L + E AR+RH+ +L+ A+ +L
Sbjct: 347 SDGEHPVYPISARTGEGVEALKEHLKACMGFQGGGEGGFS-ARQRHLDALHHADQHL--- 402
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
I+ + + EL+AE+LR E+LS I G+ T++DLL IFS FCIGK
Sbjct: 403 --IMAREQLEVYMAGELVAEELRLAQEQLSQITGEFTSDDLLGRIFSSFCIGK 453
>gi|237801669|ref|ZP_04590130.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. oryzae str.
1_6]
gi|331024528|gb|EGI04584.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. oryzae str.
1_6]
Length = 456
Score = 337 bits (864), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 189/471 (40%), Positives = 274/471 (58%), Gaps = 28/471 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT GRGGVGI+R+SG + +T LKPR+A Y F ++D+G+
Sbjct: 8 IAAIATAQGRGGVGIVRVSGPLASKTAYAIAGRT---LKPRYAHYGPFSDGTGQVLDEGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P+S+TGEDV+EL GHGGPI+L MLL CL++G RLA PGEF++RAFLN+K
Sbjct: 65 ALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS----RLARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+ AA++A+ SL G FS+ ++ L +KLI+LR +E + DFPEE
Sbjct: 121 LDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVDNLTEKLISLRIYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + + L ++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDFLADGH-VLGMLDDVRLELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ + DTAG+ D ++VE IG++R
Sbjct: 240 EAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQ-------DQVEMIGVQRALKA 292
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
+ +D I+ V DA + D + ++ P V + NK D SG + +
Sbjct: 293 IGEADRILLVVDATAPEAMDPFALWPEFLEQRPDPSKVTLIRNKADLSGDSVGLQTSED- 351
Query: 365 ANIYLSASKRI---GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIK 421
++ +S S R G+ LLR L + QT ESS + AR RH+ +L A+ L
Sbjct: 352 GHVTISLSARSGGEGLELLREHLKSCMGYEQTSESS-FSARRRHLEALRHASDSLEH--- 407
Query: 422 IINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 408 --GRAQLTLAGAGELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|190171254|gb|ACE63697.1| ThdF [Leclercia adecarboxylata]
Length = 439
Score = 337 bits (864), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 185/457 (40%), Positives = 270/457 (59%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
A PPGRGGVGI+R+SG+ + E V K K PR+A Y F + +D+G+ ++F
Sbjct: 3 AHPPGRGGVGILRISGQKAREVAEAVLGKLPK---PRYADYLPFKDTDGTALDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIARPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNAVMNDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGIERAWQEIEQA 288
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D D I P N+P+ V NK D +G ++ N + I
Sbjct: 289 DRVLFMVDGTTTAAVDPAAIWPDFIARLPANLPITVVRNKADVTGETLGLSDVNGHSLIR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA G++ LR+ L + ++E +LAR RH+ +L EA +L + +
Sbjct: 349 LSARTGEGVDELRDHLKQSMGFDTSMEGG-FLARRRHLQALEEAAQHLDQGKAQLLGAWA 407
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G-----ELLAEELRLAQQALSEITGEFTSDDLLGRIF 439
>gi|422647960|ref|ZP_16711086.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. maculicola
str. ES4326]
gi|330961500|gb|EGH61760.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. maculicola
str. ES4326]
Length = 456
Score = 337 bits (864), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 187/471 (39%), Positives = 277/471 (58%), Gaps = 28/471 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT GRGGVGI+R+SG + + +T K PR+A Y F ++D+G+
Sbjct: 8 IAAIATAQGRGGVGIVRVSGPLAGKTAQAMIGRTPK---PRYAHYGPFSDDAGEVLDEGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P+S+TGEDV+EL GHGGPI+L MLL CL++G RLA PGEF++RAFLN+K
Sbjct: 65 ALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS----RLARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+ AA++A+ SL G FS+ ++ L +KLI+LR +E + DFPEE
Sbjct: 121 LDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVDNLTEKLISLRIYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + + L ++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDFLADGH-VLTMLDDVRLELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ + DTAG ++ ++VE IG++R
Sbjct: 240 EAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAG-------LRNTEDQVEMIGVQRALKA 292
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
+ +D I+ V DA + D + ++ P V + NK D SG + + ++
Sbjct: 293 IGEADRILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKSDLSGDHVGL-FTSDD 351
Query: 365 ANIYLSASKRI---GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIK 421
++ +S S R G+ LLR L + QT ESS + AR RH+ +L A++ L
Sbjct: 352 GHVTISLSARSGGEGLELLREHLKACMGYEQTSESS-FSARRRHLEALRHASHSLEH--- 407
Query: 422 IINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 408 --GRAQLTLAGAGELLAEDLRQAQQSLGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|422296219|ref|ZP_16383893.1| tRNA modification GTPase TrmE [Pseudomonas avellanae BPIC 631]
gi|422589539|ref|ZP_16664200.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|330876348|gb|EGH10497.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|407992682|gb|EKG34258.1| tRNA modification GTPase TrmE [Pseudomonas avellanae BPIC 631]
Length = 456
Score = 337 bits (864), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 189/471 (40%), Positives = 275/471 (58%), Gaps = 28/471 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT GRGGVGI+R+SG + + T + KPRFA Y F ++ ++D+G+
Sbjct: 8 IAAIATAQGRGGVGIVRVSGPLAGKTAQAI---TGRMPKPRFAHYGPFADESGQVLDEGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P+S+TGEDV+EL GHGGPI+L MLL CL++G RLA PGEF++RAFLN+K
Sbjct: 65 ALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS----RLARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+ AA++A+ SL G FS ++ L +KLI+LR +E + DFPEE
Sbjct: 121 LDLAQAEAIADLIEASSAQAARNALRSLQGVFSLRVDNLTEKLISLRIYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + + L ++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDFLADGH-VLGMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ + DTAG+ D ++VE IG++R
Sbjct: 240 EAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQ-------DQVEMIGVQRALKA 292
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
+ +D I+ V DA + D + ++ P V + NK D SG + +
Sbjct: 293 IGEADRILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKADLSGDSIALQTSAD- 351
Query: 365 ANIYLSASKRI---GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIK 421
++ +S S R G+ LLR L + QT ESS + AR RH+ +L A+ L
Sbjct: 352 GHVTISLSARSGGEGLELLREHLKACMGYEQTSESS-FSARRRHLEALRHASDSLEH--- 407
Query: 422 IINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 408 --GRAQLTLAGAGELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|212211699|ref|YP_002302635.1| tRNA modification GTPase TrmE [Coxiella burnetii CbuG_Q212]
gi|212010109|gb|ACJ17490.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
[Coxiella burnetii CbuG_Q212]
Length = 473
Score = 337 bits (863), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 200/469 (42%), Positives = 289/469 (61%), Gaps = 29/469 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I ATP GRGG+G++R+SG+ +I + + K PR+AT+ F + ++ID+G+
Sbjct: 30 IAAQATPSGRGGIGVVRVSGEKTKAIAQKILGCVPK---PRYATFVKFR-DSGSVIDEGI 85
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P+S+TGEDV+ELHGHGGP+++ LL++ L+ G R A PGEF++RAFLNNK
Sbjct: 86 SLYFPKPNSFTGEDVLELHGHGGPVVMDRLLNTVLKAGA----RQARPGEFSERAFLNNK 141
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EA+ DLINAS+E AA+SAM SL G+FSK I+ L+D LI LR IE S DFPEE
Sbjct: 142 IDLAQAEAVADLINASSEQAARSAMRSLQGEFSKRIHQLVDALIQLRMYIEASIDFPEEE 201
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + ++ L + ++ +I + K+ AL+R G+ VV+ G+PNVGKSSL N L G
Sbjct: 202 IDFLADER-IKETLENLTHQVQEIEKTAKQGALLREGITVVIAGEPNVGKSSLLNLLSGQ 260
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD I ++I I+ + DTAG+ ++ +++ VEK G+ RT
Sbjct: 261 ETAIVTDIAGTTRDIIRESIHIDGLPIHVVDTAGL-----RLTEDV--VEKEGVRRTQKA 313
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNFPMN---IPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D+++ + DA DF K I + F N IP + V NKID G K
Sbjct: 314 VQQADLLLLMIDASKPTE-DFKKIIAQWFSENDNKIPTLIVENKIDLIGEAPRKENK-EY 371
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCA-IKII 423
+I LS R G+ LL+N L + T E++ ++AR RH ++ A+ +L A ++
Sbjct: 372 PHIKLSVKTRAGVELLKNHLKNTAGFEATHENN-FIARRRHCDAIARASAFLKNANNHLL 430
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
NQ K EL+AEDL+ LS I G+ T++DLL IFS+FCIGK
Sbjct: 431 NQ------KAGELVAEDLKLAQNALSEITGEFTSDDLLGKIFSEFCIGK 473
>gi|190171192|gb|ACE63666.1| ThdF [Enterobacter cloacae]
Length = 439
Score = 337 bits (863), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 188/458 (41%), Positives = 271/458 (59%), Gaps = 25/458 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRISGLKAREVAEAVLGKLPK---PRYADYLPFKDSDGTPLDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIAKPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNDVMTDLEAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGIERAWQEIEQA 288
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D D + I P +P+ V NK D +G I+ N + I
Sbjct: 289 DRVLFMVDGTTTDAVDPAEIWPDFIARLPAKLPITVVRNKADVTGETLGISDVNGHSLIR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCA-IKIINQSE 427
LSA G++ LRN L + ++E +LAR RH+ +L EA +L ++I
Sbjct: 349 LSARTGEGVDDLRNHLKQSMGFDTSMEGG-FLARRRHLQALEEAARHLEQGKAQLIGAWA 407
Query: 428 KNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G------ELLAEELRLAQQNLSEITGEFTSDDLLGRIF 439
>gi|332525677|ref|ZP_08401826.1| tRNA modification GTPase TrmE [Rubrivivax benzoatilyticus JA2]
gi|332109236|gb|EGJ10159.1| tRNA modification GTPase TrmE [Rubrivivax benzoatilyticus JA2]
Length = 449
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 193/471 (40%), Positives = 276/471 (58%), Gaps = 30/471 (6%)
Query: 7 PIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKG 66
PI +AT GRG VGI+R SG +L +V+ + + L PR AT F + +++D+G
Sbjct: 4 PIAAVATAAGRGAVGIVRASGPDLAPLVQALFGRA---LAPRAATLLPFTAADGSVLDRG 60
Query: 67 LVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNN 126
L I+F AP+SYTGEDV+EL HGGP++L +LL+ LE G IGLRLA GEFT+RAFLN+
Sbjct: 61 LAIHFPAPNSYTGEDVLELQAHGGPVLLQLLLARVLEAGAGIGLRLARAGEFTERAFLND 120
Query: 127 KLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEE 186
K+DL Q EA+ DLI+ASTE+AA+SA SL G FS I+ L +++ LR L+E + DFPEE
Sbjct: 121 KIDLAQAEAVADLIDASTEAAARSAARSLDGAFSAEIHTLAGRIVELRALVEATLDFPEE 180
Query: 187 NQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVG 246
+ L K L I+ + + + ++ AL+R G+ VV+ GQPNVGKSSL N+L G
Sbjct: 181 EIDF-LEKARARERLDAIEAAIGAALARARQGALLREGMRVVIAGQPNVGKSSLLNALAG 239
Query: 247 SDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWV 306
+++AIVT I GTTRD++ +TIQI + DTAG+ + +EVE+IGI R+W
Sbjct: 240 AELAIVTPIPGTTRDRVAETIQIEGVPLHVVDTAGLRE------HAADEVERIGIGRSWE 293
Query: 307 ELKNSDIIIYVQD--ARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D +++V D R D + + I V++V NK D +
Sbjct: 294 AIEGADAVLFVHDLTRRGDAAYEAAEAEIATRLQGADVLHVHNKADAAAQVAG------- 346
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP---YLARERHIHSLNEANYYLSCAIK 421
+ LSA G+ LR LL + ++ P ++AR RH+ +L +L A
Sbjct: 347 DGVVLSAKAGTGLETLRRELL----RRAGWQAQPDGVFIARARHVDALQRTLAHLHLAQA 402
Query: 422 IINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q + L+L+AE+LR H+ L I G+ T DLL IF +FCIGK
Sbjct: 403 HAAQR----DAALDLLAEELRLSHQALGEITGEFGTEDLLGEIFGRFCIGK 449
>gi|212217715|ref|YP_002304502.1| tRNA modification GTPase TrmE [Coxiella burnetii CbuK_Q154]
gi|212011977|gb|ACJ19357.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
[Coxiella burnetii CbuK_Q154]
Length = 473
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 199/469 (42%), Positives = 289/469 (61%), Gaps = 29/469 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I ATP GRGG+G++R+SG+ +I + + K PR+AT+ F + ++ID+G+
Sbjct: 30 IAAQATPSGRGGIGVVRVSGEKTKAIAQKILGCVPK---PRYATFVKFR-DSGSVIDEGI 85
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P+S+TGEDV+ELHGHGGP+++ LL++ L+ G R A PGEF++RAFLNNK
Sbjct: 86 ALYFPKPNSFTGEDVLELHGHGGPVVMDRLLNTVLKAGA----RQARPGEFSERAFLNNK 141
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EA+ DLINAS+E AA+SAM SL G+FSK I+ L+D LI LR IE S DFPEE
Sbjct: 142 IDLAQAEAVADLINASSEQAARSAMRSLQGEFSKRIHQLVDALIQLRMYIEASIDFPEEE 201
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + ++ L + ++ +I + K+ AL+R G+ VV+ G+PNVGKSSL N L G
Sbjct: 202 IDFLADER-IKETLENLTHQVQEIEKTAKQGALLREGITVVIAGEPNVGKSSLLNLLSGQ 260
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD I ++I I+ + DTAG+ ++ +++ VEK G+ RT
Sbjct: 261 ETAIVTDIAGTTRDIIRESIHIDGLPIHVVDTAGL-----RLTEDV--VEKEGVRRTQKA 313
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNFPMN---IPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D+++ + DA DF K I + F N IP + + NKID G K
Sbjct: 314 VQQADLLLLMIDASKPTE-DFKKIIAQWFSENDNKIPTLIIENKIDLIGEAPRKENK-EY 371
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCA-IKII 423
+I LS R G+ LL+N L + T E++ ++AR RH ++ A+ +L A ++
Sbjct: 372 PHIKLSVKTRAGVELLKNHLKNTAGFEATHENN-FIARRRHCDAIARASAFLKNANNHLL 430
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
NQ K EL+AEDL+ LS I G+ T++DLL IFS+FCIGK
Sbjct: 431 NQ------KAGELVAEDLKLAQNALSEITGEFTSDDLLGKIFSEFCIGK 473
>gi|422659110|ref|ZP_16721539.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. lachrymans
str. M302278]
gi|331017732|gb|EGH97788.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. lachrymans
str. M302278]
Length = 456
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 188/471 (39%), Positives = 275/471 (58%), Gaps = 28/471 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT GRGGVGI+R+SG + + + K PRFA Y F ++ ++D+G+
Sbjct: 8 IAAIATAQGRGGVGIVRVSGPLAGKTAQAIIGRMPK---PRFAHYGPFADESGQVLDEGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P+S+TGEDV+EL GHGGPI+L MLL CL++G RLA PGEF++RAFLN+K
Sbjct: 65 ALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS----RLARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+ AA++A+ SL G FS+ ++ L +KLI+LR +E + DFPEE
Sbjct: 121 LDLAQAEAIADLIEASSAQAARNALRSLQGVFSQRVDNLTEKLISLRIYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + + L ++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDFLADGH-VLGILDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ + DTAG+ D ++VE IG++R
Sbjct: 240 EAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQ-------DQVEMIGVQRALKA 292
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
+ +D I+ V DA + D + ++ P V + NK D SG + +
Sbjct: 293 IGEADRILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKADLSGDSIALQTSAD- 351
Query: 365 ANIYLSASKRI---GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIK 421
++ +S S R G+ LLR L + QT ESS + AR RH+ +L A+ L
Sbjct: 352 GHVTISLSARSGGEGLELLREHLKACMGYEQTSESS-FSARRRHLEALRHASDSLEH--- 407
Query: 422 IINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 408 --GRAQLTLAGAGELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|385333439|ref|YP_005887390.1| tRNA modification GTPase TrmE [Marinobacter adhaerens HP15]
gi|311696589|gb|ADP99462.1| tRNA modification GTPase TrmE [Marinobacter adhaerens HP15]
Length = 468
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 192/477 (40%), Positives = 276/477 (57%), Gaps = 26/477 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M + I IAT PG+ GVGI+R+SG +I + K + KPR+A Y F +
Sbjct: 13 MSQSSDTIAAIATAPGQAGVGIVRISGPKSLAIAK---KMLGFEPKPRYAHYGPFHDSHG 69
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+ID+G+ ++F PHS+TGEDV EL GHGG +IL +LL G RLA PGEF++
Sbjct: 70 ELIDEGIGLFFPNPHSFTGEDVFELQGHGGTVILDLLLREVC----GQGARLARPGEFSE 125
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI +S+E AA+ A+ S+ G FS+ I L+D + +LR +E +
Sbjct: 126 RAFLNDKLDLAQAEAIADLIESSSEQAARCAVRSMQGVFSRQIEDLVDAVTHLRIYVEAA 185
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + L ++L + ++L KI+ + ++ ++R+G+ VV+ G+PN GKSSL
Sbjct: 186 IDFPEEEIDF-LADGKVASDLQNLLERLGKILAEAQQGTILRDGMKVVIGGRPNAGKSSL 244
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT+I GTTRD + + I I+ I DTAG+ D + +EVE+IG
Sbjct: 245 LNALAGREAAIVTAIEGTTRDVLREHIHIDGMPLHIIDTAGLRD-------SPDEVEQIG 297
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
I R W E++ +D I+ + DA + T + I P N PV + NK+D SG
Sbjct: 298 IARAWEEIRQADRILLMVDATTTEKTSPHEIWPDFIDQLPANAPVTVIRNKVDLSGETVG 357
Query: 358 INYKNNIAN--IYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYY 415
I+ +++ + I L+A G+ +LR+ L + T E +LAR RH+ +L A
Sbjct: 358 ISAEDHQSAPVIRLAAKSAEGLEILRDHLKQCMGFASTTEGG-FLARRRHLDALERAQAL 416
Query: 416 LSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L I QS+ EL+AEDLR + L I G T ++LL IFS FCIGK
Sbjct: 417 L-----IQGQSQLEGFGAGELLAEDLRAAQDSLGEITGHLTPDELLGKIFSSFCIGK 468
>gi|190171218|gb|ACE63679.1| ThdF [Enterobacter hormaechei ATCC 49162]
Length = 439
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 188/458 (41%), Positives = 271/458 (59%), Gaps = 25/458 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRISGLKAREVAEAVLGKLPK---PRYADYLPFKDADGTPLDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIAKPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNQVMNDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGIERAWQEIEQA 288
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D D + I P +P+ V NK D +G I+ N + I
Sbjct: 289 DRVLFMVDGTTTDAVDPAEIWPDFIARLPAKLPITVVRNKADVTGETLGISDVNGHSLIR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCA-IKIINQSE 427
LSA G+ LRN L + ++E +LAR RH+ +L EA +L ++I
Sbjct: 349 LSARTGEGVEDLRNHLKQSMGFDTSMEGG-FLARRRHLQALEEAARHLEQGKAQLIGAWA 407
Query: 428 KNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G------ELLAEELRLAQQNLSEITGEFTSDDLLGRIF 439
>gi|90194100|gb|ABD92611.1| ThdF [Actinobacillus genomosp. 1]
Length = 436
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 190/466 (40%), Positives = 282/466 (60%), Gaps = 43/466 (9%)
Query: 13 TPPGRGGVGIIRLSGKNLWSIVEIVCKKT-KKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
TP GRGGVGI+R+SG + + V K+ K+LKPR A Y F ++ ++D+G+ ++F
Sbjct: 1 TPIGRGGVGILRISG----PLAQEVAKEVLGKELKPRLANYLPFKDQDGTVLDQGIALFF 56
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
KAP+S+TGEDV+EL GHGG +IL +LL L + G+R+A GEF+++AFLN+KLDL
Sbjct: 57 KAPNSFTGEDVLELQGHGGQVILDILLKRILAVK---GVRIARAGEFSEQAFLNDKLDLA 113
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+A++E AA+SA+ SL G+FS IN L+D +I LRT +E + DFP+E + +
Sbjct: 114 QAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEEIDFL 173
Query: 192 LNK------NDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLV 245
+ ND +L ++K + K+ A++R G+ VV+ G+PN GKSSL N+L
Sbjct: 174 ADGKIEGHLNDIIRQLNGVRK-------EAKQGAILREGMKVVIAGRPNAGKSSLLNALA 226
Query: 246 GSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTW 305
G D AIVT+IAGTTRD + + I I+ I DTAG +++ +EVE+IGI+R W
Sbjct: 227 GRDAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIQRAW 279
Query: 306 VELKNSDIIIYVQDARYDKHTDFDKK---IIKNFPMNIPVIYVWNKIDYSGHQKNINYKN 362
E++ +D ++ + D+ F + + P NIPV + NK+D SG + + +
Sbjct: 280 DEIEQADHVLLMIDSTEQTAEAFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELD 339
Query: 363 NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP---YLARERHIHSLNEANYYLSCA 419
I LSA ++G++LLR L +K+ +SS +LAR RH+ +L A +L
Sbjct: 340 GFTLIRLSAQTKVGVDLLREHL----KKSMGYQSSTEGGFLARRRHLQALETAAEHLERG 395
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
+ Q EL+AE+LR LS I G+ T++DLL NIF
Sbjct: 396 HIQLTQFFAG-----ELLAEELRMVQNALSEITGQFTSDDLLGNIF 436
>gi|190171168|gb|ACE63654.1| ThdF [Citrobacter freundii]
Length = 439
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 186/457 (40%), Positives = 270/457 (59%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SG + E V K K PR+A Y F + + +D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRISGLKAREVAETVLGKLPK---PRYADYLPFKDADGSTLDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L I GLR+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGLRIARPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNNVISDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGIERAWQEIEQA 288
Query: 312 DIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D D I P +P+ V NK D +G ++ N + +
Sbjct: 289 DRVLFMVDGTTTDAVDPADIWPDFIARLPAKLPITVVRNKADITGETLGLSEVNGHSLVR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA G+++LRN L + +E +LAR RH+ +L EA +L + +
Sbjct: 349 LSARTGEGVDVLRNHLKQSMGFETNMEGG-FLARRRHLQALAEAAEHLEQGKAQLLGAWA 407
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIF 439
>gi|410091079|ref|ZP_11287656.1| tRNA modification GTPase TrmE [Pseudomonas viridiflava UASWS0038]
gi|409761647|gb|EKN46706.1| tRNA modification GTPase TrmE [Pseudomonas viridiflava UASWS0038]
Length = 456
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 189/470 (40%), Positives = 274/470 (58%), Gaps = 26/470 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT GRGGVGI+R+SG + + + + KPR+A Y F + +D+G+
Sbjct: 8 IAAIATAQGRGGVGIVRISGPMASKAAQAIIGR---EPKPRYAHYGPFADASGQTLDEGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P+S+TGEDV+EL GHGGPI+L MLL CLE+G RLA PGEF++RAFLN+K
Sbjct: 65 ALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLELG----CRLARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+ AA++A+ SL G FS+ ++ L +KLI LR +E + DFPEE
Sbjct: 121 LDLAQAEAIADLIEASSAQAARNALHSLQGAFSQRVDKLTEKLIGLRIYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + + + L ++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDFLADGH-VLSMLDDVRDELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ + DTAG+ D ++VE IG++R
Sbjct: 240 EAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQ-------DQVEMIGVQRALKA 292
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYK-NN 363
+ +D I+ V DA + +D + ++ P V + NK D SG + +
Sbjct: 293 IGEADRILLVVDATAPEASDPFALWPEFLEQRPDPAKVTLIRNKSDLSGDTTGLETSPDG 352
Query: 364 IANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKI 422
I LSA + G+ LLR L + QT ESS + AR RH+ +L A+ L
Sbjct: 353 HVTISLSAKAGGEGLELLREHLKACMGYEQTSESS-FSARRRHLEALRHASDSLEH---- 407
Query: 423 INQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 408 -GRAQLTLAGAGELLAEDLRQAQQSLGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|410616025|ref|ZP_11327020.1| tRNA modification GTPase mnmE [Glaciecola polaris LMG 21857]
gi|410164340|dbj|GAC31158.1| tRNA modification GTPase mnmE [Glaciecola polaris LMG 21857]
Length = 460
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 190/483 (39%), Positives = 289/483 (59%), Gaps = 34/483 (7%)
Query: 1 MLTKNSP-----IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKP-RFATYSS 54
M ++ +P I+ AT GRGGVGI+R+SG ++ V ++ + P R A Y
Sbjct: 1 MTSEQAPLNQDTIVAQATASGRGGVGIVRISG----ALAGKVAEQIIGHIPPVRNAQYVP 56
Query: 55 FFCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAM 114
F K+ +D+G+ ++FKAPHS+TGEDV+EL GHGG ++L ML+ + L I +RLA
Sbjct: 57 FLSKDGEPLDQGIALFFKAPHSFTGEDVLELQGHGGQVVLDMLIKATLHIPN---VRLAR 113
Query: 115 PGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLR 174
PGEF++RA+LN+KLDL Q EAI DLI+AS+E AA+ A+ SL G+FS IN L++ L +LR
Sbjct: 114 PGEFSERAYLNDKLDLAQAEAIADLIDASSEQAARGALRSLQGEFSGHINHLVEMLTHLR 173
Query: 175 TLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPN 234
+E + DFP+E + L+ +LI I ++L + ++ ++ +L+R G+ VV+ G+PN
Sbjct: 174 IYVEAAIDFPDEEIDF-LSDGKVQKDLIAITEQLSSVKKRAQQGSLLREGMRVVIAGRPN 232
Query: 235 VGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNIN 294
GKSSL N+L G + AIVT+IAGTTRD + + I I+ I DTAG ++++ +
Sbjct: 233 AGKSSLLNALAGREAAIVTAIAGTTRDVLKEQIHIDGMPLHIIDTAG-------LRESSD 285
Query: 295 EVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDY 351
EVE+IGIER W E+ +D ++++ D+ +D K ++ P N+ + + NK D
Sbjct: 286 EVERIGIERAWQEIDQADRVLFMLDSTESIESDPHKIWPDFMQRLPQNMGLTVIRNKADL 345
Query: 352 SGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNE 411
SG N LSAS + GI++L L + + + E ++AR RHI ++
Sbjct: 346 SGETVGKVITNGYDVFNLSASNKQGIDILAEHLKECMGFHSSNEGQ-FIARRRHIDAIER 404
Query: 412 ANYYLSCAIKIINQSEKNFEKNL--ELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFC 469
A ++ ++ E NL EL+AE+LR LS I G+ +++DLL IFS FC
Sbjct: 405 AEEHVLLG-------KQQLEDNLAGELLAEELRLAQSYLSEITGEFSSDDLLGKIFSSFC 457
Query: 470 IGK 472
IGK
Sbjct: 458 IGK 460
>gi|90194068|gb|ABD92595.1| ThdF [Histophilus somni]
Length = 424
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 188/445 (42%), Positives = 269/445 (60%), Gaps = 24/445 (5%)
Query: 13 TPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFK 72
TP GRGGVGI+R+SG + E V KT L PR A Y F + +++D+G+ +YFK
Sbjct: 1 TPIGRGGVGILRVSGPLAQQVAEQVLGKT---LTPRMANYLPFKDSDGSVLDQGIALYFK 57
Query: 73 APHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQ 132
AP+S+TGEDV+EL GHGG I++ +LL L+I G+RLA PGEF+++AFLN+KLDL Q
Sbjct: 58 APNSFTGEDVLELQGHGGQIVMDLLLKRILQID---GIRLARPGEFSEQAFLNDKLDLAQ 114
Query: 133 VEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELIL 192
EAI DLI AS+E AA+SA+ SL G+FS IN L+D +I LRT +E + DFP+E + L
Sbjct: 115 AEAIADLIEASSEQAARSALKSLQGEFSNKINELVDSVIYLRTYVEAAIDFPDEEIDF-L 173
Query: 193 NKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIV 252
L +I KL K+ + K+ A++R G+ VV+ G+PN GKSSL N+L G + AIV
Sbjct: 174 ADGKIETHLREIIAKLAKVKNEAKQGAILREGMKVVIAGRPNAGKSSLLNTLAGREAAIV 233
Query: 253 TSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSD 312
T IAGTTRD + + I I+ I DTAG+ D +EVEKIGI R W E++ +D
Sbjct: 234 TDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT-------DEVEKIGIRRAWDEIEQAD 286
Query: 313 IIIYVQDARYDKHTDFD---KKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYL 369
I+ + D+ + + D + + P +IP+ V NK D SG + ++ +N + I L
Sbjct: 287 RILLILDS-TENQVELDLVRSEFMAKLPPHIPLTIVRNKADLSGEAEVLDEQNGLTVISL 345
Query: 370 SASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEKN 429
SA + G++LLR L + Q +LAR RH+ +L +A+ +L + + +
Sbjct: 346 SAKTQKGVDLLRQHLKQSM-GYQVCTEGGFLARRRHLEALEQADIHLQAGLIQLTEFYAG 404
Query: 430 FEKNLELIAEDLRFCHEKLSSIIGK 454
EL+AE+LR LS I G+
Sbjct: 405 -----ELLAEELRIVQHHLSEITGQ 424
>gi|170729246|ref|YP_001763272.1| tRNA modification GTPase TrmE [Shewanella woodyi ATCC 51908]
gi|205415805|sp|B1KQ64.1|MNME_SHEWM RecName: Full=tRNA modification GTPase MnmE
gi|169814593|gb|ACA89177.1| tRNA modification GTPase TrmE [Shewanella woodyi ATCC 51908]
Length = 453
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 186/468 (39%), Positives = 275/468 (58%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG + V K R+A Y F N +ID+G+
Sbjct: 6 IVAQATAPGRGGVGIIRISGDKASDVAMAVLGHLPK---TRYADYCDFKDAENAVIDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF+ P+S+TGEDV+EL GHGG I+L ML+ +E+ G+R+A PGEF+++AF+N+K
Sbjct: 63 ALYFQGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVD---GVRIAKPGEFSEQAFMNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI+A++E AAKSA+ SL G+FS I+ L++++ NLR +E + DFP+E
Sbjct: 120 MDLTQAEAIADLIDATSEQAAKSALNSLQGEFSVQIHELVEQVTNLRLYVEAAIDFPDEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ L +I KL + K+ A+IR G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 VDF-LSDGKIAGSLNRIITKLDSVQASAKQGAIIREGMKVVIAGRPNAGKSSLLNALAGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D + + VE IGIER W E
Sbjct: 239 ESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTD-------DTVEMIGIERAWAE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D D + I P N+ + V NK D +G + +
Sbjct: 292 IETADQVLFMVDGTTTDAVDPREIWPDFIDRLPKNLGITVVRNKADITGEPLTVTQDHGH 351
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
+ +SA +G+ L+ L L+ +E ++AR RH+ +L+ A+ +L +I
Sbjct: 352 SVFKISAKTGLGVESLQQHLKSLMGYQSNLEGG-FIARRRHLEALDLASSHL-----MIG 405
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR LS I GK T++DLL IFS FCIGK
Sbjct: 406 KEQLEVYLAGELLAEELRMTQMALSEITGKFTSDDLLGKIFSSFCIGK 453
>gi|90194102|gb|ABD92612.1| ThdF [Actinobacillus capsulatus]
Length = 436
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 188/457 (41%), Positives = 279/457 (61%), Gaps = 25/457 (5%)
Query: 13 TPPGRGGVGIIRLSGKNLWSIVEIVCKKT-KKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
TP GRGGVGI+R+SG + + V K+ K+LKPR A Y F ++ ++D+G+ ++F
Sbjct: 1 TPIGRGGVGILRISG----PLAQEVAKEVLGKELKPRLANYLPFKDQDGTVLDQGIALFF 56
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
KAP+S+TGEDV+EL GHGG +IL +LL L + G+R+A GEF+++AFLN+KLDL
Sbjct: 57 KAPNSFTGEDVLELQGHGGQVILDILLKRILAVK---GVRIARAGEFSEQAFLNDKLDLA 113
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+A++E AA+SA+ SL G+FS IN L+D +I LRT +E + DFP+E +
Sbjct: 114 QAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEEIDF- 172
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L L I ++L + ++ K+ A++R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 173 LADGKIEGHLNDIIRQLNGVRKEAKQGAILREGMKVVIAGRPNAGKSSLLNALAGREAAI 232
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT+IAGTTRD + + I I+ I DTAG +++ +EVEKIGI+R W E++ +
Sbjct: 233 VTNIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVEKIGIQRAWDEIEQA 285
Query: 312 DIIIYVQDARYDKHTDFDKK---IIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++ + D+ F + + P NIPV + NK+D SG + + + I
Sbjct: 286 DHVLLMIDSTEQTAEAFKTEWADFLAKLPQNIPVTVIRNKVDLSGESEGLQELDGFTLIR 345
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA ++G++LLR L + + + E +LAR RH+ +L A +L + Q
Sbjct: 346 LSAQTKVGVDLLREHLKNSMGYQSSTEGG-FLARRRHLQALETAAEHLERGHIQLTQFFA 404
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR LS I G+ T++DLL NIF
Sbjct: 405 G-----ELLAEELRMVQNALSEITGQFTSDDLLGNIF 436
>gi|90194122|gb|ABD92622.1| ThdF [Actinobacillus indolicus]
Length = 436
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 187/459 (40%), Positives = 283/459 (61%), Gaps = 29/459 (6%)
Query: 13 TPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFK 72
TP GRGG+GI+R+SG + E V K K PR A Y F ++ ++D+G+ ++FK
Sbjct: 1 TPIGRGGIGILRVSGPLAADVAEAVLGKCPK---PRMADYLPFKDEDGTVLDQGIALFFK 57
Query: 73 APHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQ 132
AP+S+TGEDV+EL GHGG +IL +LL+ L++ G+R+A GEF+++AFLN+KLDL Q
Sbjct: 58 APNSFTGEDVLELQGHGGQVILDLLLNRILKVK---GVRIARAGEFSEQAFLNDKLDLAQ 114
Query: 133 VEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELIL 192
EAI DLI+A++E AA+SA+ SL G+FS IN L+D +I LRT +E + DFP+E + L
Sbjct: 115 AEAIADLIDATSEQAARSALKSLQGEFSHKINALVDNVIYLRTYVEAAIDFPDEEIDF-L 173
Query: 193 NKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIV 252
+L +I +L + Q+ K+ +++R G+ VV+ G+PN GKSSL N+L G + AIV
Sbjct: 174 ADGKIEAKLNEIITQLANVRQEAKQGSILREGMKVVIAGKPNAGKSSLLNALAGREAAIV 233
Query: 253 TSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSD 312
T IAGTTRD + + I I+ I DTAG +++ +EVEKIGI+R W E++ +D
Sbjct: 234 TDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVEKIGIKRAWDEIEQAD 286
Query: 313 IIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYL 369
++ + D+ + F + + + P NIPV + NK+D +G +++ +N I L
Sbjct: 287 HVLLMIDSNESQADHFQQEWAEFLAKLPKNIPVTVIRNKVDLTGETESLVQTDNFTVIRL 346
Query: 370 SASKRIGINLLRNTLLDLIEKTQTIESSP---YLARERHIHSLNEANYYLSCAIKIINQS 426
SA ++G++LLR L +K+ +SS ++AR RH+ +L A +L + Q
Sbjct: 347 SAQTKVGVDLLREHL----KKSMGYQSSTEGGFIARRRHLVALETAAEHLQRGHVQLTQF 402
Query: 427 EKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR LS I G+ T++DLL NIF
Sbjct: 403 YAG-----ELLAEELRMVQNALSEITGQFTSDDLLGNIF 436
>gi|90194076|gb|ABD92599.1| ThdF [Nicoletella semolina]
Length = 441
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 194/471 (41%), Positives = 286/471 (60%), Gaps = 48/471 (10%)
Query: 13 TPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFK 72
TP GRGG+GI+R+SG ++ + V K K PR A Y F +NN+I+D+G+ ++FK
Sbjct: 1 TPIGRGGIGILRVSGPLASTVAQTVLGKCPK---PRVADYLPFRDENNDILDQGIALFFK 57
Query: 73 APHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQ 132
APHS+TGEDV+EL GHGG +IL +LL L+I G+R+A GEF+++AFLN+KLDL Q
Sbjct: 58 APHSFTGEDVLELQGHGGQVILDLLLQRILKIH---GVRIARAGEFSEQAFLNDKLDLAQ 114
Query: 133 VEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELIL 192
EAI DLI+A++E AA+SA+ SL G+FS IN L++ +I LRT +E + DFP+E + +
Sbjct: 115 AEAIADLIDATSEQAARSALKSLQGEFSHKINQLVEAVIYLRTYVEAAIDFPDEEIDFLA 174
Query: 193 NKNDFFNELIKIKKKLLKIIQ-------QGKKRALIRNGLNVVLIGQPNVGKSSLFNSLV 245
+ KI+ KL II Q K+ ++R G+ VV+ G+PN GKSSL N+L
Sbjct: 175 DG--------KIESKLNDIIAQVDAVRYQAKQGTILREGMKVVIAGKPNAGKSSLLNALA 226
Query: 246 GSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTW 305
G + AIVT+IAGTTRD + + I I+ I DTAG +++ +EVEKIGI+R W
Sbjct: 227 GREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVEKIGIQRAW 279
Query: 306 VELKNSDIIIYVQDARYDKHTDFDKK---IIKNFPMNIPVIYVWNKIDYSGHQKNINY-- 360
E++ +D I+ + D+ + +F + ++ P N+P+ + NK+D SG + I
Sbjct: 280 SEIEQADHILLMIDSNQSQAVNFKTEYADFLQKLPPNLPLTVIRNKVDLSGENEGIEALS 339
Query: 361 ---KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP---YLARERHIHSLNEANY 414
+ N I LSA ++G++LLR L +K+ +SS ++AR RH+ +LN A
Sbjct: 340 QTDRANTTVIRLSAQTQLGVDLLREHL----KKSMGYQSSTEGGFIARRRHLEALNLAAN 395
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
+L + Q EL+AE+LR LS I G+ T++DLL NIF
Sbjct: 396 HLQRGHVQLTQFFAG-----ELLAEELRLVQNALSEITGQFTSDDLLGNIF 441
>gi|190171224|gb|ACE63682.1| ThdF [Enterobacter pulveris]
gi|190171234|gb|ACE63687.1| ThdF [Enterobacter pulveris]
Length = 439
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 183/457 (40%), Positives = 270/457 (59%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SGK + + V K K PR+A Y F +N +D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRISGKLARDVAQAVLGKLPK---PRYADYLPFKDSDNTPLDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNTVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWKEIEQA 288
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D D + + P +P+ V NK D +G + N + I
Sbjct: 289 DRVLFMVDGTTTDAVDPAQIWPDFMARLPQTLPITVVRNKADVTGEAPGLTEVNGHSLIR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA G+ +LR+ L + +E +LAR RH+ +L EA +L + +
Sbjct: 349 LSARSGDGVEVLRDHLKSSMGFDTNMEGG-FLARRRHLQALEEAAAHLQQGKAQLLGAWA 407
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G-----ELLAEELRLAQQSLSEITGEFTSDDLLGRIF 439
>gi|339484946|ref|YP_004699474.1| tRNA modification GTPase TrmE [Pseudomonas putida S16]
gi|338835789|gb|AEJ10594.1| tRNA modification GTPase TrmE [Pseudomonas putida S16]
Length = 456
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 189/477 (39%), Positives = 277/477 (58%), Gaps = 26/477 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M T I IAT GRGGVGI+RLSG +++ +T L PR A Y F +
Sbjct: 1 MNTVRETIAAIATAQGRGGVGIVRLSGPLAAKAGQLITGRT---LTPRHAHYGPFRDEEG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
++D+G+ ++F P+S+TGEDV+EL GHGGP++L MLL C+++G RLA PGEF++
Sbjct: 58 LVLDEGIALFFPGPNSFTGEDVLELQGHGGPVVLDMLLQRCVQVG----CRLARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G+FSK ++ L + LI LR +E +
Sbjct: 114 RAFLNDKLDLAQAEAIADLIEASSSQAARNALRSLQGEFSKRVHFLTEALIALRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + + + + L ++ +L K+ ++ + AL+R+G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDFLADGH-VLAMLDTVRGELSKVQREAGQGALLRDGMTVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N L G + AIVT IAGTTRD + + I I+ + DTAG+ D + + VEKIG
Sbjct: 233 LNQLAGREAAIVTDIAGTTRDILREHIHIDGMPLHVVDTAGLRDTD-------DHVEKIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
+ER + +D ++ V D+ + +D + + P V + NK D SG +
Sbjct: 286 VERALKAIGEADRVLLVVDSTAPEASDPFALWPEFLDQRPDPAKVTLIRNKADLSGERVA 345
Query: 358 INY-KNNIANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYY 415
+ + I LSA G+ LLR+ L + QT ES + AR RH+ +L +A+ +
Sbjct: 346 LEQCDDGHVTITLSAKGDDAGLQLLRDHLKACMGYEQTAESG-FSARRRHLDALRQASEH 404
Query: 416 LSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L +++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 405 LEH-----GRAQLTLAGAGELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|157373142|ref|YP_001471742.1| tRNA modification GTPase TrmE [Shewanella sediminis HAW-EB3]
gi|189036210|sp|A8FP41.1|MNME_SHESH RecName: Full=tRNA modification GTPase MnmE
gi|157315516|gb|ABV34614.1| tRNA modification GTPase TrmE [Shewanella sediminis HAW-EB3]
Length = 453
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 184/468 (39%), Positives = 271/468 (57%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG + + K R+A Y F +ID+G+
Sbjct: 6 IVAQATAPGRGGVGIIRISGDQASEVAMALLGHIPK---TRYADYCDFKDGEGEVIDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF+ P+S+TGEDV+EL GHGG I+L ML+ +E+ G+R+A PGEF+++AF+N+K
Sbjct: 63 ALYFQGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVE---GIRIAKPGEFSEQAFMNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AAKSA+ SL G+FS ++ L+D++ NLR +E + DFP+E
Sbjct: 120 LDLTQAEAIADLIDATSEQAAKSALNSLQGEFSTQVHELVDRVTNLRLYVEAAIDFPDEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ L +I KL + K+ A+IR G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 VDF-LSDGKIAGSLYRIITKLDSVQASAKQGAIIREGMKVVIAGRPNAGKSSLLNALAGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D + VE+IGIER W E
Sbjct: 239 ESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRD-------TADTVEQIGIERAWAE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D D + I P + + V NK D +G + +
Sbjct: 292 IETADQVLFMVDGTTTDAVDPHEIWPDFIDRLPEKLGITVVRNKADITGEALTVTQDHGH 351
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
+SA +G+ L+ L L+ +E ++AR RH+ +L A +L +I
Sbjct: 352 NVFRISAKTGLGVEELQQHLKSLMGYQSNLEGG-FIARRRHLEALELATSHL-----MIG 405
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + + EL+AE+LR LS I GK T++DLL IFS FCIGK
Sbjct: 406 KEQLEVYQAGELLAEELRMTQMALSEITGKFTSDDLLGKIFSSFCIGK 453
>gi|190171228|gb|ACE63684.1| ThdF [Enterobacter pulveris]
gi|190171232|gb|ACE63686.1| ThdF [Enterobacter pulveris]
Length = 439
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 183/457 (40%), Positives = 270/457 (59%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SGK + + V K K PR+A Y F +N +D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRISGKLARDVAQAVLGKLPK---PRYADYLPFKDSDNTPLDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNTVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWKEIEQA 288
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D D + + P +P+ V NK D +G + N + I
Sbjct: 289 DRVLFMVDGTTTDAVDPAQIWPDFMARLPQTLPITVVRNKADVTGEAPGLTEVNGHSLIR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA G+ +LR+ L + +E +LAR RH+ +L EA +L + +
Sbjct: 349 LSARSGDGVEVLRDHLKSSMGFDTNMEGG-FLARRRHLQALEEAAAHLQQGKAQLLGAWA 407
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G-----ELLAEELRLAQQSLSEITGEFTSDDLLGRIF 439
>gi|190171304|gb|ACE63722.1| ThdF [Cronobacter sakazakii]
Length = 439
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 183/457 (40%), Positives = 273/457 (59%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SG+ + + V K K R+A Y F + +D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRVSGQQARDVAQAVLGKLPK---ARYADYLPFKDADGTALDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWQEIEQA 288
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D TD + I +P+ V NK D +G Q I+ N + I
Sbjct: 289 DRVLFMVDGTTTDATDPAQIWPDFIARLSAKLPITVVRNKADVTGEQPGISEVNGHSLIR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA G+++LRN L + ++E +LAR RH+ +L +A +L + +
Sbjct: 349 LSARTNEGVDVLRNHLKQSMGFDTSMEGG-FLARRRHLQALEDAANHLQQGKAQLLGAWA 407
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G-----ELLAEELRLAQQALSEITGEFTSDDLLGRIF 439
>gi|409422355|ref|ZP_11259456.1| tRNA modification GTPase TrmE [Pseudomonas sp. HYS]
Length = 456
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 190/477 (39%), Positives = 277/477 (58%), Gaps = 26/477 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M T I IAT GRGGVGI+RLSG +C K L PR A Y +F ++
Sbjct: 1 MNTVRETIAAIATAQGRGGVGIVRLSGPLAQQAGLAICGKA---LTPRHAHYGAFRAEDG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
++D+G+ ++F P+S+TGEDV+EL GHGGP++L MLL C+++G RLA PGEF++
Sbjct: 58 LVLDEGIALFFPGPNSFTGEDVLELQGHGGPVVLDMLLQRCVQLG----CRLARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G+FS+ ++ L +KLI+LR +E +
Sbjct: 114 RAFLNDKLDLAQAEAIADLIEASSAQAARNALRSLQGEFSRRVDNLTEKLISLRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + + + + + L +++ L + ++ + AL+R+G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDFLADGH-VLSMLDEVRNNLSTVQREAGQGALLRDGMTVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N L G + AIVT IAGTTRD + + I I+ + DTAG+ D + + VEKIG
Sbjct: 233 LNVLAGREAAIVTDIAGTTRDILREHIHIDGMPLHVVDTAGLRDTD-------DHVEKIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
+ER + +D ++ V D+ + +D + + P V + NK D SG
Sbjct: 286 VERALKAINEADRVLLVVDSTAPEASDPFALWPEFLDLRPDPAKVTLIRNKADLSGEAIA 345
Query: 358 INY-KNNIANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYY 415
+ ++ I LSA +G+ LLR L + QT ESS + AR RH+ +L +A +
Sbjct: 346 MEQSEDGHVTITLSAKDTDMGLELLREHLKACMGYEQTAESS-FSARRRHLEALRQAGAH 404
Query: 416 LSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L ++ EL+AEDLR L I G +++DLL IFS FCIGK
Sbjct: 405 LEH-----GHAQLTLAGAGELLAEDLRQAQHALGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|190171346|gb|ACE63743.1| ThdF [Cronobacter turicensis]
gi|190171348|gb|ACE63744.1| ThdF [Cronobacter turicensis]
Length = 439
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 182/457 (39%), Positives = 273/457 (59%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SG+ + + V K K R+A Y F + +D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRVSGQQARDVAQAVLGKLPKA---RYADYLPFKDADGTALDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L I G+R+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGVRIAKPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWQEIEQA 288
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D TD + I P +P+ V NK D +G ++ N + I
Sbjct: 289 DRVLFMVDGTTTDATDPAQIWPDFIARLPAKLPITVVRNKADVTGEHPGLSEVNGHSLIR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA G+++LR+ L + ++E +LAR RH+ +L +A +L + +
Sbjct: 349 LSARTSDGVDVLRSHLKQSMGFDTSMEGG-FLARRRHLQALEDAANHLQQGKAQLLGAWA 407
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G-----ELLAEELRLAQQALSEITGEFTSDDLLGRIF 439
>gi|153873147|ref|ZP_02001823.1| tRNA modification GTPase [Beggiatoa sp. PS]
gi|152070386|gb|EDN68176.1| tRNA modification GTPase [Beggiatoa sp. PS]
Length = 444
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 190/474 (40%), Positives = 281/474 (59%), Gaps = 32/474 (6%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
ML + I +ATP GRGG+G+IR+SG + I V + K PR+ T+S F
Sbjct: 1 MLEQQDTIAALATPAGRGGIGVIRISGPKVPEIARAVLGQLPK---PRYGTFSDFLEPTG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID+G+ +YF APHS+TGE V+EL GHGGP+++ +LL + L+ G R+A PGEF++
Sbjct: 58 EQIDQGIALYFPAPHSFTGEAVLELQGHGGPVVMDLLLKAVLKYGA----RVARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN K+DL Q EAI DLI++++ AA+ A+ SL G+FS I+ L+++LI LR+ IE
Sbjct: 114 RAFLNGKIDLAQAEAIADLIDSASTQAARCALRSLQGEFSHQIHSLVEQLIWLRSYIEAG 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DF +E +L L + + K+ L I+ + ++ L++ G+ +VL+G+PNVGKSSL
Sbjct: 174 IDFVDEEIDL-LADGQVLDRMKKLLHGLDTILDKAQQGYLLKEGMRIVLVGEPNVGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
NSL G + AIVT + GTTRD + IQIN ITDTAG +++ + VE G
Sbjct: 233 LNSLAGRETAIVTPLPGTTRDVVRDQIQINGMPLHITDTAG-------LRETEDLVELEG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF--PMNIPVIYVWNKIDYSGHQKNI 358
I RT + LK +D++I + D D+H+ + I N ++ P + V NKID SGH+ +
Sbjct: 286 IRRTKLALKEADLVIVLLD---DRHS--NDSIHANLLAELDKPPLIVRNKIDLSGHRAGM 340
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N + +YLSA GI L++ + + E + ++AR RH+ +L +A L+
Sbjct: 341 NEEG---ILYLSAKTGEGIEQLKDYFTQKMGLHSSAEGT-FMARRRHLDALQQAKIALTT 396
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
A+ + + EL+AE+LR L I G+ T +DLL IFS FCIGK
Sbjct: 397 ALNHAHTYQT------ELLAEELRQAQHALGEITGEFTADDLLGQIFSTFCIGK 444
>gi|190171226|gb|ACE63683.1| ThdF [Enterobacter pulveris]
Length = 439
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 183/457 (40%), Positives = 270/457 (59%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SGK + + V K K PR+A Y F +N +D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRISGKLARDVAQAVLGKLPK---PRYADYLPFKDSDNTPLDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNTVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWKEIEQA 288
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D D + + P +P+ V NK D +G + N + I
Sbjct: 289 DRVLFMVDGTTTDAVDPAQIWPDFMARLPQALPITVVRNKADVTGEAPGLTEVNGHSLIR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA G+ +LR+ L + +E +LAR RH+ +L EA +L + +
Sbjct: 349 LSARSGEGVEVLRDHLKSSMGFDTNMEGG-FLARRRHLQALEEAAAHLQQGKAQLLGAWA 407
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G-----ELLAEELRLAQQSLSEITGEFTSDDLLGRIF 439
>gi|365922135|ref|ZP_09446368.1| tRNA modification GTPase TrmE [Cardiobacterium valvarum F0432]
gi|364574813|gb|EHM52252.1| tRNA modification GTPase TrmE [Cardiobacterium valvarum F0432]
Length = 447
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 186/471 (39%), Positives = 283/471 (60%), Gaps = 24/471 (5%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
+T + I +ATPPG GGV IIR+SG + +I + KT PR AT ++ + +
Sbjct: 1 MTAHDTIAALATPPGTGGVAIIRISGHDALAIGTRLSGKTPA---PRRATLAALHDADGS 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+ID+GL++YF APHSYTGED +E+HGHGG + +L++ L + G RLA PGE+++R
Sbjct: 58 LIDQGLLLYFPAPHSYTGEDTLEIHGHGGIAVSQTVLAAVL----NAGARLAEPGEYSRR 113
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
A+ N K+DL Q EAI DLINA T +A K+A SL G FS+ +N L +L LR IE +
Sbjct: 114 AYQNGKIDLAQAEAIADLINARTAAAVKAATRSLEGAFSQEVNALATELFALRAYIEAAL 173
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFPEE + L++ D L + ++L +++ Q + L+ +G+N+V+ G+PN GKSSL
Sbjct: 174 DFPEEEND-YLSEGDLETRLYRWGERLTRLLAQSTQGRLMNDGINLVIAGKPNAGKSSLL 232
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L+G + AIVT+ AGTTRD + +T+ I I DTAG+ D + +E+ GI
Sbjct: 233 NALIGEERAIVTAQAGTTRDIVRETLNIAGVPVNILDTAGLRDA-------ADHIEQEGI 285
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYK 361
RT L ++D+I+ + D +D + P + +NK D + Q NI
Sbjct: 286 RRTKQALASADLILLLVDGSTLADSDDPAADLPPETATTPRLLAYNKADQT--QANIQ-S 342
Query: 362 NNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIK 421
N+ ++LSA GI+ LR+ + + + + E +PY+ARERH+ +L +A + A+
Sbjct: 343 NHREGLWLSAKTGDGIDALRHAIAAAVGRDER-EETPYIARERHLRALKQAAQHHRDALA 401
Query: 422 IINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ + +N EL+AEDLR H+ L SI G ++++DLL +IFS FCIGK
Sbjct: 402 QLHGA-----RNGELLAEDLRLAHDALGSITGATSSDDLLGHIFSTFCIGK 447
>gi|190171242|gb|ACE63691.1| ThdF [Enterobacter sp. OD1121_04]
Length = 439
Score = 335 bits (859), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 186/457 (40%), Positives = 269/457 (58%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRISGLKAREVAEAVLGKLPK---PRYADYLPFKDTDGTPLDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIAKPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNSVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGIERAWQEIEQA 288
Query: 312 DIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D D I P +P+ V NK D +G I+ N + I
Sbjct: 289 DRVLFMVDGTTTDAVDPADIWPDFIARLPAKLPITVVRNKADVTGETLGISEVNGHSLIR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA G++ LRN L + ++E +LAR RH+ +L +A +L + +
Sbjct: 349 LSARTGEGVDDLRNHLKQSMGFDTSMEGG-FLARRRHLQALEDAARHLDQGKAQLLGAWA 407
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIF 439
>gi|90194108|gb|ABD92615.1| ThdF [Actinobacillus lignieresii]
gi|90194114|gb|ABD92618.1| ThdF [Actinobacillus pleuropneumoniae]
gi|90194116|gb|ABD92619.1| ThdF [Actinobacillus pleuropneumoniae serovar 4 str. M62]
gi|90194118|gb|ABD92620.1| ThdF [Actinobacillus pleuropneumoniae]
Length = 436
Score = 335 bits (859), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 191/460 (41%), Positives = 281/460 (61%), Gaps = 31/460 (6%)
Query: 13 TPPGRGGVGIIRLSGKNLWSIVEIVCKKT-KKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
TP GRGGVGI+R+SG + + V K+ K+LKPR A Y F ++ ++D+G+ ++F
Sbjct: 1 TPIGRGGVGILRISG----PLAQEVAKEVLGKELKPRLANYLPFKDQDGTVLDQGIALFF 56
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
KAP+S+TGEDV+EL GHGG +IL +LL L I G+R+A GEF+++AFLN+KLDL
Sbjct: 57 KAPNSFTGEDVLELQGHGGQVILDILLKRILTIK---GIRIARAGEFSEQAFLNDKLDLA 113
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+A++E AA+SA+ SL G+FS IN L+D +I LRT +E + DFP+E +
Sbjct: 114 QAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEEIDF- 172
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L L I ++L + ++ K+ A++R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 173 LADGKIEGHLNDIIRQLNGVRKEAKQGAILREGMKVVIAGRPNAGKSSLLNALAGREAAI 232
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT+IAGTTRD + + I I+ I DTAG +++ +EVEKIGI+R W E++ +
Sbjct: 233 VTNIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVEKIGIQRAWDEIEQA 285
Query: 312 DIIIYVQDARYDKHTDFDKK---IIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++ + D+ F + + P NIPV + NK+D SG + + + I
Sbjct: 286 DHVLLMIDSTEQTAEAFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIR 345
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSP---YLARERHIHSLNEANYYLSCAIKIINQ 425
LSA ++G++LLR L +K+ +SS +LAR RH+ +L A +L + Q
Sbjct: 346 LSAQTKVGVDLLREHL----KKSMGYQSSTEGGFLARRRHLQALETAAEHLERGHIQLTQ 401
Query: 426 SEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR LS I G+ T++DLL NIF
Sbjct: 402 FFAG-----ELLAEELRMVQNALSEITGQFTSDDLLGNIF 436
>gi|212554405|gb|ACJ26859.1| tRNA modification GTPase TrmE:Small GTP-binding protein
domain:GTP-binding [Shewanella piezotolerans WP3]
Length = 453
Score = 335 bits (859), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 189/468 (40%), Positives = 275/468 (58%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG ++ V K R+A Y F + +ID+G+
Sbjct: 6 IVAQATAPGRGGVGIIRVSGDLASNVAMAVLGHIPK---TRYADYCDFKDEQGGVIDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK P+S+TGEDV+EL GHGG I+L ML+ +E + GLR+A PGEF+++AF+N+K
Sbjct: 63 ALYFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVME---TEGLRIAKPGEFSEQAFMNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AAKSA+ SL G+FS ++ L++++ NLR +E + DFP+E
Sbjct: 120 LDLTQAEAIADLIDATSEQAAKSALNSLQGEFSTQVHELVEQVTNLRLYVEAAIDFPDEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ L +I KL + K+ ++IR G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 VDF-LSDGKISGSLNRIITKLDTVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D + VEKIGIER W E
Sbjct: 239 ESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRD-------TADTVEKIGIERAWDE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
+K +D ++++ D D + I P N+ V V NK D +G I +
Sbjct: 292 IKTADQVLFMVDGTTTNAVDPHEIWPDFIDRLPKNLGVTVVRNKADLTGETLEITEEAGH 351
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
+SA +G+ L+ L L+ +E ++AR RH+ +L+ A+ +L +
Sbjct: 352 PVHRISAKTGLGVPALQQHLKSLMGYQSNLEGG-FIARRRHLEALDLASSHLD-----LG 405
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + + EL+AE+LR LS I GK T++DLL IFS FCIGK
Sbjct: 406 REQLEVYQAGELLAEELRMAQLALSEITGKFTSDDLLGKIFSSFCIGK 453
>gi|90194098|gb|ABD92610.1| ThdF [Actinobacillus suis ATCC 33415]
Length = 436
Score = 335 bits (859), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 190/460 (41%), Positives = 281/460 (61%), Gaps = 31/460 (6%)
Query: 13 TPPGRGGVGIIRLSGKNLWSIVEIVCKKT-KKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
TP GRGGVGI+R+SG + + V K+ K+LKPR A Y F ++ ++D+G+ ++F
Sbjct: 1 TPIGRGGVGILRISG----PLAQEVAKEVLGKELKPRLANYLPFKDQDGTVLDQGIALFF 56
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
KAP+S+TGEDV+EL GHGG +IL +LL L + G+R+A GEF+++AFLN+KLDL
Sbjct: 57 KAPNSFTGEDVLELQGHGGQVILDILLKRILAVK---GVRIARAGEFSEQAFLNDKLDLA 113
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+A++E AA+SA+ SL G+FS IN L+D +I LRT +E + DFP+E +
Sbjct: 114 QAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEEIDF- 172
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L L I ++L + ++ K+ A++R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 173 LADGKIEGHLNDIIRQLNGVRKEAKQGAILREGMKVVIAGRPNAGKSSLLNALAGREAAI 232
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT+IAGTTRD + + I I+ I DTAG +++ +EVEKIGI+R W E++ +
Sbjct: 233 VTNIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVEKIGIQRAWDEIEQA 285
Query: 312 DIIIYVQDARYDKHTDFDKK---IIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++ + D+ F + + P NIPV + NK+D SG + + + I
Sbjct: 286 DHVLLMIDSTEQTAEAFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIR 345
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSP---YLARERHIHSLNEANYYLSCAIKIINQ 425
LSA ++G++LLR L +K+ +SS +LAR RH+ +L A +L + Q
Sbjct: 346 LSAQTKVGVDLLREHL----KKSMGYQSSTEGGFLARRRHLQALETAAEHLERGHIQLTQ 401
Query: 426 SEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR LS I G+ T++DLL NIF
Sbjct: 402 FFAG-----ELLAEELRMVQNALSEITGQFTSDDLLGNIF 436
>gi|190171350|gb|ACE63745.1| ThdF [Cronobacter turicensis]
Length = 439
Score = 335 bits (859), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 183/457 (40%), Positives = 273/457 (59%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
AT PGRGGVGI+R+SG+ + + V K K R+A Y F + +D+G+ ++F
Sbjct: 3 ATHPGRGGVGILRVSGQQARDVAQAVLGKLPK---ARYADYLPFKDADGTALDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L I G+R+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGVRIAKPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWQEIEQA 288
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D TD + I P +P+ V NK D +G Q ++ N + I
Sbjct: 289 DRVLFMVDGTTTDATDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGLSEVNGHSLIR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA G+++LRN L + ++E +LAR RH+ +L +A +L + +
Sbjct: 349 LSARTSDGVDVLRNHLKQSMGFDTSMEGG-FLARRRHLQALEDAANHLQQGKAQLLGAWA 407
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G-----ELLAEELRLAQQALSEITGEFTSDDLLGRIF 439
>gi|258544267|ref|ZP_05704501.1| tRNA modification GTPase TrmE [Cardiobacterium hominis ATCC 15826]
gi|258520505|gb|EEV89364.1| tRNA modification GTPase TrmE [Cardiobacterium hominis ATCC 15826]
Length = 446
Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 187/475 (39%), Positives = 276/475 (58%), Gaps = 32/475 (6%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M I IATPPG GGV IIR+SG +I V T PR AT +
Sbjct: 1 MQPARDTIAAIATPPGTGGVSIIRISGGEALAIAARVSGITPA---PRRATLAHIRDARG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+ +D+ L++Y+ APHSYTGED +E+ GHGG + +L++ L+ G RLA PGE+T+
Sbjct: 58 DTLDQALLLYYPAPHSYTGEDTLEIQGHGGIAVTQAVLAAVLDAGA----RLAEPGEYTR 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RA+LNNK+DL Q EAI DLINA +++A K+A SL G FS+ I L L+ LR IE +
Sbjct: 114 RAYLNNKIDLAQAEAIADLINARSQAAVKAANRSLQGDFSRQIETLAADLLALRIYIEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + L + D L ++L ++ Q + L+ +G+N+V+ G+PN GKSSL
Sbjct: 174 LDFPEEEIDF-LREGDIAARLQGWGERLRTLLAQSTQGRLMNDGINLVIAGKPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+LVG + AIVT+ AGTTRD + +TI I+ I DTAG +++ + VE+ G
Sbjct: 233 LNALVGEERAIVTAQAGTTRDIVRETILIHGMPVNILDTAG-------LREASDLVEQEG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFP---MNIPVIYVWNKIDYSGHQKN 357
I RT L +D+I+ ++D + D + + P + P++ +NK D +
Sbjct: 286 IRRTRQALNQADLILLLRDG-----SALDDRGDETLPPESADTPLLLAYNKADQTPPAVQ 340
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
+ + ++LSA GI+ LR+ + + + + E SPY+ARERH+ +L++A +
Sbjct: 341 AQHAD---GLWLSAKTGAGIDALRDAIACAVGR-DSREESPYIARERHLRALHQAERHYQ 396
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
A+ ++ S+ N ELIAEDLR H+ L SI G +++DLL +IFS FCIGK
Sbjct: 397 HALAQLHASQ-----NGELIAEDLRLAHDALGSITGAVSSDDLLGHIFSSFCIGK 446
>gi|190171222|gb|ACE63681.1| ThdF [Enterobacter ludwigii]
Length = 439
Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 185/457 (40%), Positives = 269/457 (58%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRISGLKAREVAEAVLGKLPK---PRYADYLPFKDTDGTPLDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGMRIAKPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNSVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGIERAWQEIEQA 288
Query: 312 DIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D D I P +P+ V NK D +G I+ N + I
Sbjct: 289 DRVLFMVDGTTTDAVDPADIWPDFIARLPAKLPITVVRNKADVTGETLGISEVNGHSLIR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA G++ LRN L + ++E +LAR RH+ +L +A +L + +
Sbjct: 349 LSARTGEGVDDLRNHLKQSMGFDTSMEGG-FLARRRHLQALEDAARHLDQGKAQLLGAWA 407
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G-----ELLAEELRLAQQNLSEITGEITSDDLLGRIF 439
>gi|422651105|ref|ZP_16713903.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. actinidiae
str. M302091]
gi|330964186|gb|EGH64446.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. actinidiae
str. M302091]
Length = 456
Score = 335 bits (858), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 188/471 (39%), Positives = 274/471 (58%), Gaps = 28/471 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I I T GRGGVGI+R+SG + + T + KPRFA Y F ++ ++D+G+
Sbjct: 8 IAAITTAQGRGGVGIVRVSGPLAGKTAQAI---TGRMPKPRFAHYGPFADESGQVLDEGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P+S+TGEDV+EL GHGGPI+L MLL CL++G RLA PGEF++RAFLN+K
Sbjct: 65 ALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS----RLARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+ AA++A+ SL G FS ++ L +KLI+LR +E + DFPEE
Sbjct: 121 LDLAQAEAIADLIEASSAQAARNALRSLQGVFSLRVDNLTEKLISLRIYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + + L ++ +L ++++ + AL+R+G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDFLADGH-VLGMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ + DTAG+ D ++VE IG++R
Sbjct: 240 EAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQ-------DQVEMIGVQRALKA 292
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
+ +D I+ V DA + D + ++ P V + NK D SG + +
Sbjct: 293 IGEADRILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKADLSGDSIALQTSAD- 351
Query: 365 ANIYLSASKRI---GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIK 421
++ +S S R G+ LLR L + QT ESS + AR RH+ +L A+ L
Sbjct: 352 GHVTISLSARSGGEGLELLREHLKACMGYEQTSESS-FSARRRHLEALRHASDSLEH--- 407
Query: 422 IINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 408 --GRAQLTLAGAGELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|163751386|ref|ZP_02158611.1| tRNA modification GTPase [Shewanella benthica KT99]
gi|161328689|gb|EDP99837.1| tRNA modification GTPase [Shewanella benthica KT99]
Length = 453
Score = 335 bits (858), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 184/468 (39%), Positives = 275/468 (58%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG E+ K R+A Y F + +ID+G+
Sbjct: 6 IVAQATAPGRGGVGIIRISGDQ---ASEVAMAMLGHIPKTRYADYCDFKTADGEVIDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK P S+TGEDV+EL GHGG I+L ML+ +E + G+R+A PGEF+++AF+N+K
Sbjct: 63 ALYFKGPKSFTGEDVLELQGHGGQIVLDMLIKRVME---TKGIRIARPGEFSEQAFMNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AAKSA+ SL G+FS ++ L++++ NLR +E + DFP+E
Sbjct: 120 LDLTQAEAIADLIDATSEQAAKSALNSLQGEFSAEVHALVEQVTNLRLYVEAAIDFPDEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ L KI KL + K+ ++IR G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 VDF-LSDGKISGSLNKIITKLDSVKASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT +AGTTRD + + I ++ I DTAG +++ ++ VEKIGIER W E
Sbjct: 239 ETAIVTEVAGTTRDVLREHIHLDGMPLHIIDTAG-------LRETVDTVEKIGIERAWAE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D D + I P + + V NK D +G ++ +
Sbjct: 292 IETADQVLFMLDGTTTDAVDPHEIWPDFIDRLPNKLGITVVRNKADLTGESLALSEDHGH 351
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
+SA +GI L+ L L+ +E ++AR RH+ +L+ A+ +L ++
Sbjct: 352 PVFPISAKTGLGIEALKQHLKSLMGYQSNLEGG-FIARRRHLEALDLASSHL-----MLG 405
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR LS I GK T++DLL IFS FCIGK
Sbjct: 406 KEQLEVYLAGELLAEELRMTQLALSEITGKFTSDDLLGKIFSSFCIGK 453
>gi|345871389|ref|ZP_08823335.1| tRNA modification GTPase mnmE [Thiorhodococcus drewsii AZ1]
gi|343920552|gb|EGV31283.1| tRNA modification GTPase mnmE [Thiorhodococcus drewsii AZ1]
Length = 446
Score = 335 bits (858), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 186/472 (39%), Positives = 271/472 (57%), Gaps = 39/472 (8%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I +ATPPG GGVGI+R+SG + +I + + T PR ATY F N ID+G+
Sbjct: 7 IAAVATPPGLGGVGIVRVSGPRVSAIAQAI---TGALPSPRTATYRVFRDAENGFIDEGI 63
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P S+TGEDV+EL GHGGP+++ +LL CL +G RLA PGEFT+RAFLN K
Sbjct: 64 ALYFPGPRSFTGEDVLELQGHGGPVVMDLLLERCL----GLGARLAHPGEFTERAFLNGK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL+Q EA+ DLI +ST + A +L G+FS+ I L++ LI LR IE + DFPEE
Sbjct: 120 LDLVQAEAVADLIESSTALGVRLAGRTLQGEFSRRIQALVESLIQLRIFIESALDFPEEE 179
Query: 188 QELILNKN--DFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLV 245
+ + + + + + I + +++L+ +G+ ++R GL VV+ G PNVGKSSL N+L
Sbjct: 180 IDFLADSSVAEDLDRAIAMTRRVLEEAHRGQ---VLREGLVVVIAGAPNVGKSSLLNALS 236
Query: 246 GSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTW 305
+D AIVT I GTTRD + + IQI+ ++ DTAG ++ + VE+ G+ R
Sbjct: 237 DTDAAIVTPIPGTTRDLLRQDIQIDGLPIRVVDTAG-------LRATEDPVEREGVRRAR 289
Query: 306 VELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIA 365
+L ++D+++ V YD + D I + P IPV+ + NKID I ++
Sbjct: 290 KQLDDADLVLLV----YDAQSGPDPSIAETLPSGIPVVRIRNKIDLLDESPGILQNDSEV 345
Query: 366 NIYLSASKRIGINLLRNTL---LDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKI 422
I LS + G++LL L L + I ++AR RH+ +LN +L
Sbjct: 346 EISLSVATAQGLDLLHAHLKHHAGLDAGHEGI----FIARRRHLDALNRGLQHLL----- 396
Query: 423 INQSEKNFEKNL--ELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ N E L EL+AE+L + L I G+ T+ DLL IFS FCIGK
Sbjct: 397 --EAQHNLEGQLGPELVAEELLLAQKMLGEITGEVTSEDLLGRIFSSFCIGK 446
>gi|254000528|ref|YP_003052591.1| tRNA modification GTPase TrmE [Methylovorus glucosetrophus SIP3-4]
gi|253987207|gb|ACT52064.1| tRNA modification GTPase TrmE [Methylovorus glucosetrophus SIP3-4]
Length = 446
Score = 335 bits (858), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 199/465 (42%), Positives = 273/465 (58%), Gaps = 25/465 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT PG GG+G++R+SG I V PR A Y F + +ID G+
Sbjct: 7 IAAIATAPGSGGIGVVRISGPASAQIAAAVLGHCPP---PRHAAYLPFKEADGQLIDSGI 63
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
I++ PHSYTGEDV+EL HGGP ++ +LL C +G R A PGEFT+RAFLN+K
Sbjct: 64 AIFYAGPHSYTGEDVLELQAHGGPALMQLLLLRC----LQLGARQAEPGEFTRRAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EA+ D+INA+T AA+SA+ SLSG+FS+ I LL+ LINLR +E DFPEE+
Sbjct: 120 LDLAQAEAVADVINAATAEAARSAVRSLSGEFSRYIQDLLESLINLRMYVEACLDFPEED 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ I ++ +L I L + + ++ L+R G+ VVL+GQPNVGKSSL N L G
Sbjct: 180 IDFI-SQGRVAEKLQNIADALELVFKGARQGNLLREGIQVVLVGQPNVGKSSLMNQLAGE 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+VAIVT IAGTTRD I +QI + DTAG +++ +EVEK GI RTW
Sbjct: 239 EVAIVTPIAGTTRDTIKNVVQIEGVPLHLIDTAG-------LRETEDEVEKQGIARTWRA 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANI 367
L+N++ + + DA + T+ +K I++ P N+P I+V NKID Q ++
Sbjct: 292 LENANAALLLVDAAHGI-TETEKSILERLPANLPKIWVHNKIDLHSEQPRQREHEGELHL 350
Query: 368 YLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSE 427
Y+SA +G++ L+ LL I Q S ++AR RH+ +L +L A + Q
Sbjct: 351 YISAKLGLGLDALKAHLLK-IAGWQPAGESIFMARTRHLQALQMVQGHLQNAAVYLEQP- 408
Query: 428 KNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
EL+AE+LR LSSI G+ T +DLL IFS+FCIGK
Sbjct: 409 -------ELLAEELRLAQHVLSSITGEFTPDDLLGEIFSRFCIGK 446
>gi|190171268|gb|ACE63704.1| ThdF [Cronobacter genomosp. 1]
Length = 439
Score = 334 bits (857), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 182/457 (39%), Positives = 273/457 (59%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
AT PGRGGVGI+R+SG+ + + V K K R+A Y F + +D+G+ ++F
Sbjct: 3 ATHPGRGGVGILRVSGQQARDVAQAVLGKLPK---ARYADYLPFKDADGTALDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWQEIEQA 288
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D TD + I P +P+ V NK D +G Q ++ N + I
Sbjct: 289 DRVLFMVDGTTTDATDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGLSEVNGHSLIR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA G+++LRN L + ++E +LAR RH+ +L +A +L + +
Sbjct: 349 LSARTNEGVDVLRNHLKQSMGFDTSMEGG-FLARRRHLQALEDAANHLQQGKAQLLGAWA 407
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G-----ELLAEELRLAQQALSEITGEFTSDDLLGRIF 439
>gi|410647418|ref|ZP_11357850.1| tRNA modification GTPase mnmE [Glaciecola agarilytica NO2]
gi|410133008|dbj|GAC06249.1| tRNA modification GTPase mnmE [Glaciecola agarilytica NO2]
Length = 460
Score = 334 bits (857), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 192/472 (40%), Positives = 283/472 (59%), Gaps = 31/472 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKP-RFATYSSFFCKNNNIIDKG 66
I+ AT GRGGVGI+R+SG ++ V ++ + P R A Y F +D+G
Sbjct: 13 IVAQATASGRGGVGIVRVSG----TLAAEVAEQIIGHVPPVRNAQYVPFVANTGEALDQG 68
Query: 67 LVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNN 126
+ +YFKAPHS+TGEDV+EL GHGG ++L ML+ + L+I +RLA PGEF++RA+LN+
Sbjct: 69 IALYFKAPHSFTGEDVLELQGHGGQVVLDMLIKATLQIPN---VRLARPGEFSERAYLND 125
Query: 127 KLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEE 186
KLDL Q EAI DLI+AS+E AA+ A+ SL G+FS IN L++ L +LR IE + DFP+E
Sbjct: 126 KLDLAQAEAIADLIDASSEQAARGALRSLQGEFSTQINHLVELLTHLRIYIEAAIDFPDE 185
Query: 187 NQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVG 246
+ L+ N+L I +L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G
Sbjct: 186 EIDF-LSDGKVQNDLSAITAQLSAVKNKAQQGSLLREGMRVVIAGRPNAGKSSLLNALAG 244
Query: 247 SDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWV 306
D AIVT+IAGTTRD + + I I+ I DTAG+ D + +EVE+IGIER W
Sbjct: 245 RDAAIVTAIAGTTRDVLKEHIHIDGMPLHIIDTAGLRD-------SSDEVERIGIERAWQ 297
Query: 307 ELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQ-KNINYKN 362
E++ +D ++++ D+ + +D K ++ P + + + NK D SG + YK
Sbjct: 298 EIEQADRVLFMLDSTDTQESDPYKIWPDFMQRLPDKMGLTVIRNKADLSGESIGKVEYKG 357
Query: 363 NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKI 422
LSAS + GI++L L + + + E ++AR RHI ++ A +L
Sbjct: 358 YPV-FQLSASHKQGIDVLAEHLKECMGFHSSNEGQ-FIARRRHIDAIERAEEHLLLG--- 412
Query: 423 INQSEKNFEKNL--ELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ E NL EL+AE+LR LS I G+ +++DLL IFS FCIGK
Sbjct: 413 ----KQQLEDNLAGELLAEELRLAQSYLSEITGEFSSDDLLGKIFSSFCIGK 460
>gi|190171236|gb|ACE63688.1| ThdF [Enterobacter radicincitans]
Length = 439
Score = 334 bits (857), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 183/457 (40%), Positives = 271/457 (59%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SG + + V K K PR+A Y F + + +D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRISGVKARDVAQAVLGKLPK---PRYADYLPFQDADGSALDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIARPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWQEIEQA 288
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D D + I P +P+ V NK D +G I+ NN + +
Sbjct: 289 DRVLFMVDGTTTDAVDPAEIWPDFIARLPARLPITVVRNKADVTGEPLGISDVNNHSLVR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA G+++LR L + ++E +LAR RH+ +L A +L + +
Sbjct: 349 LSARTGEGVDVLRQHLKQSMGFDTSMEGG-FLARRRHLQALEAAAEHLQQGKAQLLGAWA 407
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIF 439
>gi|109900608|ref|YP_663863.1| tRNA modification GTPase TrmE [Pseudoalteromonas atlantica T6c]
gi|123170439|sp|Q15MS9.1|MNME_PSEA6 RecName: Full=tRNA modification GTPase MnmE
gi|109702889|gb|ABG42809.1| tRNA modification GTPase trmE [Pseudoalteromonas atlantica T6c]
Length = 460
Score = 334 bits (857), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 192/482 (39%), Positives = 283/482 (58%), Gaps = 35/482 (7%)
Query: 2 LTKNSP----IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKP--RFATYSSF 55
+ +N+P I+ AT GRGGVGI+R+SG + E + P R A Y F
Sbjct: 3 VEQNTPDQDTIVAQATASGRGGVGIVRVSGSLAAKVAEQIIGHV-----PLIRNAQYVPF 57
Query: 56 FCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMP 115
+D+G+ ++FKAPHS+TGEDV+EL GHGG ++L ML+ + L + +RLA P
Sbjct: 58 KSNTGEPLDQGIALFFKAPHSFTGEDVLELQGHGGQVVLDMLIKATLHVPN---VRLARP 114
Query: 116 GEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRT 175
GEF++RA+LN+KLDL Q EAI DLI+AS+E AA+ A+ SL G+FS IN L++ L +LR
Sbjct: 115 GEFSERAYLNDKLDLAQAEAIADLIDASSEQAARGALRSLQGEFSTQINSLVELLTHLRI 174
Query: 176 LIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235
+E + DFP+E + L+ N+L I K+L + Q ++ +L+R G+ VV+ G+PN
Sbjct: 175 YVEAAIDFPDEEIDF-LSDGKVQNDLKAITKQLSSVKSQARQGSLLREGMRVVIAGRPNA 233
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKSSL N+L G D AIVT+IAGTTRD + + I I+ I DTAG+ D + +E
Sbjct: 234 GKSSLLNALAGRDAAIVTAIAGTTRDVLKEHIHIDGMPLHIIDTAGLRD-------SSDE 286
Query: 296 VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYS 352
VE+IGIER W E++ +D ++++ D+ D K + ++ P N+ + + NK D S
Sbjct: 287 VERIGIERAWQEIEQADRVLFMLDSTETHENDPYKIWPEFMRRLPKNMGLTVIRNKADLS 346
Query: 353 GHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEA 412
G ++ LSAS + GI +L L + + + E ++AR RHI ++ A
Sbjct: 347 GENVGKVQYDDYPVFQLSASHKQGIEVLAEHLKECMGFHSSNEGQ-FIARRRHIDAIERA 405
Query: 413 NYYLSCAIKIINQSEKNFEKNL--ELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCI 470
+L ++ E NL EL+AE+LR LS I G+ +++DLL IFS FCI
Sbjct: 406 EEHLLLG-------KQQLEDNLAGELLAEELRLAQAYLSEITGEFSSDDLLGKIFSSFCI 458
Query: 471 GK 472
GK
Sbjct: 459 GK 460
>gi|358449462|ref|ZP_09159946.1| tRNA modification GTPase TrmE [Marinobacter manganoxydans MnI7-9]
gi|357226217|gb|EHJ04698.1| tRNA modification GTPase TrmE [Marinobacter manganoxydans MnI7-9]
Length = 456
Score = 334 bits (857), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 192/470 (40%), Positives = 276/470 (58%), Gaps = 26/470 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT PG+ GVGI+R+SG +I + K + KPR+A Y F + +ID+G+
Sbjct: 8 IAAIATAPGQAGVGIVRISGPKSLAIAK---KMLGFEPKPRYAHYGPFHDSHGELIDEGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F PHS+TGEDV EL GHGG +IL +LL S G RLA PGEF++RAFLN+K
Sbjct: 65 GLFFPNPHSFTGEDVFELQGHGGTVILDLLLREVC----SQGARLARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI +S+E AA+ A+ S+ G FS+ I L++ + +LR +E + DFPEE
Sbjct: 121 LDLAQAEAIADLIESSSEQAARCAVRSMQGVFSRQIEDLVEAVTHLRIYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L ++L + ++L KI+ + ++ ++R+G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDF-LADGKVASDLQNLLERLGKILAEAQQGTILRDGMKVVIGGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT+I GTTRD + + I I+ I DTAG+ D + +EVE+IGI R W E
Sbjct: 240 EAAIVTAIEGTTRDVLREHIHIDGMPLHIIDTAGLRD-------SPDEVEQIGIARAWEE 292
Query: 308 LKNSDIIIYVQDA-RYDKHTDFD--KKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D I+ + DA DK + + I P N PV + NK+D SG I+ +++
Sbjct: 293 IRQADRILLMVDATTTDKTSPHEIWPDFIDQLPANAPVTVIRNKVDLSGETVGISAEDHQ 352
Query: 365 AN--IYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKI 422
+ I L+A G+ +LR+ L + T E +LAR RH+ +L A L I
Sbjct: 353 SAPVIRLAAKSAEGLEILRDHLKQCMGFASTTEGG-FLARRRHLDALERAQALL-----I 406
Query: 423 INQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
QS+ EL+AEDLR + L I G T ++LL IFS FCIGK
Sbjct: 407 QGQSQLEGFGAGELLAEDLRAAQDSLGEITGHLTPDELLGKIFSSFCIGK 456
>gi|332308614|ref|YP_004436465.1| tRNA modification GTPase TrmE [Glaciecola sp. 4H-3-7+YE-5]
gi|332175943|gb|AEE25197.1| tRNA modification GTPase TrmE [Glaciecola sp. 4H-3-7+YE-5]
Length = 460
Score = 334 bits (857), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 191/472 (40%), Positives = 283/472 (59%), Gaps = 31/472 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKP-RFATYSSFFCKNNNIIDKG 66
I+ AT GRGGVGI+R+SG ++ V ++ + P R A Y F +D+G
Sbjct: 13 IVAQATASGRGGVGIVRVSG----TLAAKVAEQIIGHVPPVRNAQYVPFVSNTGEALDQG 68
Query: 67 LVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNN 126
+ +YFKAPHS+TGEDV+EL GHGG ++L ML+ + L+I +RLA PGEF++RA+LN+
Sbjct: 69 IALYFKAPHSFTGEDVLELQGHGGQVVLDMLIKATLQIPD---VRLARPGEFSERAYLND 125
Query: 127 KLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEE 186
KLDL Q EAI DLI+AS+E AA+ A+ SL G+FS IN L++ L +LR +E + DFP+E
Sbjct: 126 KLDLAQAEAIADLIDASSEQAARGALRSLQGEFSTQINHLVELLTHLRIYVEAAIDFPDE 185
Query: 187 NQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVG 246
+ L+ N+L I +L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G
Sbjct: 186 EIDF-LSDGKVQNDLSAITAQLSAVKNKAQQGSLLREGMRVVIAGRPNAGKSSLLNALAG 244
Query: 247 SDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWV 306
D AIVT+IAGTTRD + + I I+ I DTAG+ D + +EVE+IGIER W
Sbjct: 245 RDAAIVTAIAGTTRDVLKEHIHIDGMPLHIIDTAGLRD-------SSDEVERIGIERAWQ 297
Query: 307 ELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQ-KNINYKN 362
E++ +D ++++ D+ + +D K ++ P + + + NK D SG + YK
Sbjct: 298 EIEQADRVLFMLDSTETQESDPYKIWPDFMQRLPDKMGLTVIRNKADLSGESIGKVEYK- 356
Query: 363 NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKI 422
LSAS + GI++L L + + + E ++AR RHI ++ A +L
Sbjct: 357 GYPVFQLSASHKQGIDVLAEHLKECMGFHSSNEGQ-FIARRRHIDAIERAEEHLLLG--- 412
Query: 423 INQSEKNFEKNL--ELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ E NL EL+AE+LR LS I G+ +++DLL IFS FCIGK
Sbjct: 413 ----KQQLEDNLAGELLAEELRLAQSYLSEITGEFSSDDLLGKIFSSFCIGK 460
>gi|190171230|gb|ACE63685.1| ThdF [Enterobacter pulveris]
Length = 439
Score = 334 bits (857), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 183/457 (40%), Positives = 270/457 (59%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SGK + + V K K PR+A Y F +N +D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRISGKLARDVAQAVLGKLPK---PRYADYLPFKDSDNTPLDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNTVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWKEIEQA 288
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D D + + P +P+ V NK D +G + N + I
Sbjct: 289 DRVLFMVDGTTTDAVDPAQIWPDFMARLPQALPITVVRNKADVTGEAPGLTEVNGHSLIR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA G+ +LR+ L + +E +LAR RH+ +L EA +L + +
Sbjct: 349 LSARSGEGVEVLRDHLKSSMGFDTNMEGG-FLARRRHLQALEEAANHLQQGKAQLLGAWA 407
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G-----ELLAEELRLAQQSLSEITGEFTSDDLLGRIF 439
>gi|90194130|gb|ABD92626.1| ThdF [Mannheimia varigena]
Length = 436
Score = 334 bits (856), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 190/466 (40%), Positives = 280/466 (60%), Gaps = 43/466 (9%)
Query: 13 TPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFK 72
TP GRGGVGI+R+SG ++ E V K +L+PR A Y F ++ ++D+G+ ++FK
Sbjct: 1 TPIGRGGVGILRVSGPLAETVAEAVVGK---KLQPRLANYLPFKDEDGTVLDQGIALFFK 57
Query: 73 APHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQ 132
AP+S+TGEDV+EL GHGG +IL +LL L++ G+R+A GEF+++AFLN+KLDL Q
Sbjct: 58 APNSFTGEDVLELQGHGGQVILDLLLKRILQVK---GVRIARAGEFSEQAFLNDKLDLAQ 114
Query: 133 VEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELIL 192
EAI DLI+A++E AA+SA+ SL G+FS IN L+D +I LRT +E + DFP+E + +
Sbjct: 115 AEAIADLIDATSEQAARSALKSLQGEFSNKINALVDDVIYLRTYVEAAIDFPDEEIDFLA 174
Query: 193 NKNDFFNELIKIKKKLLKIIQQ-------GKKRALIRNGLNVVLIGQPNVGKSSLFNSLV 245
+ KI+ KL II Q K+ +++R G+ VV+ G+PN GKSSL N+L
Sbjct: 175 DG--------KIEAKLNDIIAQLDGVRREAKQGSILREGMKVVIAGRPNAGKSSLLNALA 226
Query: 246 GSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTW 305
G + AIVT+IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI R W
Sbjct: 227 GREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGIARAW 279
Query: 306 VELKNSDIIIYVQDARYDKHTDFDKK---IIKNFPMNIPVIYVWNKIDYSGHQKNINYKN 362
E+ +D ++ + D+ F + + P N+PV + NK+D SG + +
Sbjct: 280 DEIAQADHVLLMIDSTEQTADQFRNEWADFLAKLPANMPVTVIRNKVDLSGEPEGLIQVE 339
Query: 363 NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP---YLARERHIHSLNEANYYLSCA 419
+ I LSA ++G++LLR L +K+ +SS +LAR RH+ +L A +L
Sbjct: 340 DFTMIRLSAQTKVGVDLLREHL----KKSMGYQSSTEGGFLARRRHLQALETAADHLERG 395
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
+ Q EL+AE+LR LS I G+ T++DLL NIF
Sbjct: 396 HIQLTQFFAG-----ELLAEELRMVQNALSEITGQFTSDDLLGNIF 436
>gi|114565212|ref|YP_752726.1| tRNA modification GTPase TrmE [Shewanella frigidimarina NCIMB 400]
gi|122298225|sp|Q07VS7.1|MNME_SHEFN RecName: Full=tRNA modification GTPase MnmE
gi|114336505|gb|ABI73887.1| tRNA modification GTPase trmE [Shewanella frigidimarina NCIMB 400]
Length = 453
Score = 334 bits (856), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 190/474 (40%), Positives = 277/474 (58%), Gaps = 35/474 (7%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG ++ + K R+A Y F + +ID+G+
Sbjct: 6 IVAQATAPGRGGVGIIRISGDLATNVATAIIGHVPK---TRYAEYCDFNNADGQVIDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++FK P+S+TGEDV+EL GHGG I+L ML+ +EI G+R+A PGEF+++AF+N+K
Sbjct: 63 ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEID---GIRIARPGEFSEQAFMNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AAKSA+ SL G+FSK ++ L+D++ NLR +E + DFP+E
Sbjct: 120 LDLTQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPDEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ N L KI KL + K+ ++IR G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 VDF-LSDGKIANALYKIISKLDTVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I ++ I DTAG+ D ++ VE+IGIER W E
Sbjct: 239 ESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRD-------TLDTVEQIGIERAWAE 291
Query: 308 LKNSDIIIYVQDAR-------YDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
+ ++D ++++ D ++ DF I P + V V NK D +G +
Sbjct: 292 IASADRVLFMVDGTTTDAVNPHEIWPDF----IDRLPAKLGVTVVRNKADLTGETLDKTE 347
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
+ +SA +GI+ L+ L L+ +E ++AR RH+ +L A +L
Sbjct: 348 EQGSCVYRISAKTGLGIDELKQHLKSLMGYQSNLEGG-FIARRRHLEALELAANHLQLG- 405
Query: 421 KIINQSEKNFEKNL--ELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ E L EL+AE+LR LS I GK T++DLL IF FCIGK
Sbjct: 406 ------KEQLEVYLAGELLAEELRMTQMALSEITGKFTSDDLLGKIFGSFCIGK 453
>gi|398845105|ref|ZP_10602150.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM84]
gi|398253877|gb|EJN38989.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM84]
Length = 456
Score = 334 bits (856), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 186/478 (38%), Positives = 282/478 (58%), Gaps = 28/478 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M T I+ IAT GRGGVGI+RLSG +++ +T L PR A Y F +
Sbjct: 1 MNTVRETIVAIATAQGRGGVGIVRLSGPLAAQAGQLITGRT---LTPRHAHYGPFRDEQG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
++D+G+ ++F P+S+TGEDV+EL GHGGP++L MLL C+++G RLA PGEF++
Sbjct: 58 LVLDEGIALFFPGPNSFTGEDVLELQGHGGPVVLDMLLQRCVQVG----CRLARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G+FSK ++ L + LI LR +E +
Sbjct: 114 RAFLNDKLDLAQAEAIADLIEASSSQAARNALRSLQGEFSKRVHSLTEALIALRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + + + + + L ++ +L + ++ + AL+R+G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDFLADGH-VLSMLDTVRSELSTVQREAGQGALLRDGMTVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I I+ + DTAG+ D + + VEKIG
Sbjct: 233 LNTLAGREAAIVTDIAGTTRDILREHIHIDGMPLHVVDTAGLRDTD-------DHVEKIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
+ER + +D ++ V D+ + +D + + P V + NK D SG +
Sbjct: 286 VERALKAIGEADRVLLVVDSTAPEASDPFALWPEFLDQRPDPAKVTLIRNKADLSGERVG 345
Query: 358 INYKNNIANIYLSASKR---IGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ ++ ++ L+ S + G+ LLR+ L + QT ES + AR RH+ +L +A+
Sbjct: 346 LEQCDD-GHVTLTLSAKGDDQGLLLLRDHLKACMGYEQTAESG-FSARRRHLDALRQASD 403
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L +++ EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 404 HLEH-----GRAQLTLAGAGELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|190171260|gb|ACE63700.1| ThdF [Cronobacter dublinensis]
Length = 439
Score = 334 bits (856), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 181/457 (39%), Positives = 272/457 (59%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SG+ + + V K K R+A Y F + +D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRVSGQQARDVAQAVLGKLPKA---RYADYLPFKDADGTALDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWQEIEQA 288
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D TD + I P +P+ V NK D +G I+ N + +
Sbjct: 289 DRVLFMVDGTTTDATDPAQIWPDFIARLPATLPITVVRNKADVTGEVPGISEVNGHSLVR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA G+++LR+ L + ++E +LAR RH+ +L A +L + +
Sbjct: 349 LSARTSDGVDVLRSHLKQSMGFDTSMEGG-FLARRRHLQALETAANHLQQGKAQLLGAWA 407
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G-----ELLAEELRLAQQALSEITGEFTSDDLLGRIF 439
>gi|190171248|gb|ACE63694.1| ThdF [Escherichia vulneris]
Length = 439
Score = 334 bits (856), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 185/457 (40%), Positives = 268/457 (58%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SG + + V K K PR+A Y F + +D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRISGHKAREVAQAVLGKLPK---PRYADYLPFNDADGTALDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIARPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNGVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGIERAWQEIEQA 288
Query: 312 DIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D D I P +P+ V NK D +G I+ N + +
Sbjct: 289 DRVLFMVDGTTTDAVDPADIWPDFIARLPAKLPITVVRNKADLTGETLGISEVNGHSLVR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA GI++LRN L + +E +LAR RH+ +L A +L + +
Sbjct: 349 LSAYTGEGIDVLRNHLKQSMGFDTQMEGG-FLARRRHLQALELAAEHLQQGKAQLLGAWA 407
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G-----ELLAEELRLAQQSLSEITGEFTSDDLLGRIF 439
>gi|407693573|ref|YP_006818362.1| tRNA modification GTPase TrmE [Actinobacillus suis H91-0380]
gi|407389630|gb|AFU20123.1| tRNA modification GTPase TrmE [Actinobacillus suis H91-0380]
Length = 436
Score = 334 bits (856), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 189/460 (41%), Positives = 281/460 (61%), Gaps = 31/460 (6%)
Query: 20 VGIIRLSGKNLWSIVEIVCKKT-KKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPHSYT 78
+GI+R+SG + + V K+ K+LKPR A Y F ++ ++D+G+ ++FKAP+S+T
Sbjct: 1 MGILRISG----PLAQEVAKEVLGKELKPRLANYLPFKDQDGTVLDQGIALFFKAPNSFT 56
Query: 79 GEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVEAIID 138
GEDV+EL GHGG +IL +LL L + G+R+A GEF+++AFLN+KLDL Q EAI D
Sbjct: 57 GEDVLELQGHGGQVILDILLKRILAVK---GVRIARAGEFSEQAFLNDKLDLAQAEAIAD 113
Query: 139 LINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELILNKNDFF 198
LI+A++E AA+SA+ SL G+FS IN L+D +I LRT +E + DFP+E + L
Sbjct: 114 LIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEEIDF-LADGKIE 172
Query: 199 NELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGT 258
L I ++L + ++ K+ A++R G+ VV+ G+PN GKSSL N+L G + AIVT+IAGT
Sbjct: 173 GHLNDIIRQLNGVRKEAKQGAILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGT 232
Query: 259 TRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQ 318
TRD + + I I+ I DTAG +++ +EVEKIGI+R W E++ +D ++ +
Sbjct: 233 TRDVLREHIHIDGMPLHIIDTAG-------LREASDEVEKIGIQRAWDEIEQADHVLLMI 285
Query: 319 DARYDKHTDFDKK---IIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKRI 375
D+ F + + P NIPV + NK+D SG + + + I LSA ++
Sbjct: 286 DSTEQTAEAFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIRLSAQTKV 345
Query: 376 GINLLRNTLLDLIEKTQTIESSP---YLARERHIHSLNEANYYLSCAIKIINQSEKNFEK 432
G++LLR L +K+ +SS +LAR RH+ +L A +L + Q
Sbjct: 346 GVDLLREHL----KKSMGYQSSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAG--- 398
Query: 433 NLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 399 --ELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 436
>gi|350563785|ref|ZP_08932605.1| tRNA modification GTPase TrmE [Thioalkalimicrobium aerophilum AL3]
gi|349778306|gb|EGZ32662.1| tRNA modification GTPase TrmE [Thioalkalimicrobium aerophilum AL3]
Length = 430
Score = 334 bits (856), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 189/454 (41%), Positives = 277/454 (61%), Gaps = 25/454 (5%)
Query: 20 VGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPHSYTG 79
+GIIR+SG + +I + + + K A Y +F+ +N I+D+G+ + FKAPHS+TG
Sbjct: 1 MGIIRVSGPDSDTIAQKILGNLPEIKK---AHYGAFYAQNGEILDQGIALRFKAPHSFTG 57
Query: 80 EDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVEAIIDL 139
EDV+EL GHGGPII+ L+ +++G R A PGEF+++AFLN+KLDL Q EAI DL
Sbjct: 58 EDVLELQGHGGPIIMQWLIEEVVKLGA----RPARPGEFSQQAFLNDKLDLTQAEAIADL 113
Query: 140 INASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELILNKNDFFN 199
I+A++ AAKSA+ SL G F+K IN L+++LINLR +E + DFPEE + L+
Sbjct: 114 ISATSAQAAKSALKSLQGNFAKAINQLVEQLINLRLYVEAAIDFPEEEIDF-LSDGHIQQ 172
Query: 200 ELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTT 259
+L + +L + Q ++ AL+R G++VV++GQPN GKSSL N+L G + AIVT IAGTT
Sbjct: 173 QLNLVTTQLNNVFTQAQQGALLREGMSVVILGQPNAGKSSLLNALSGEETAIVTDIAGTT 232
Query: 260 RDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSD-IIIYVQ 318
RD + I ++ I DTAG+ D N + VE+IGI R W ++ ++ +++ VQ
Sbjct: 233 RDIVKAEIHLDGMPLHILDTAGLRDTN-------DAVEQIGIARAWQAIEQANHVLVMVQ 285
Query: 319 DARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKRIGIN 378
D+ II P N+ V + NKID + I I LSA ++G+N
Sbjct: 286 AGETIDPK--DQAIIAQLPPNLSVTLIKNKIDLVAAEPYIKSTEQGYEIGLSAKHKLGLN 343
Query: 379 LLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIA 438
LL + L ++ QT ES +LAR+RH+ +L + ++L+ A Q++ EL+A
Sbjct: 344 LLTDHLKAIMGYKQTNESV-FLARKRHLVALEQTQHHLNLA-----QAQLEIGAG-ELLA 396
Query: 439 EDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
E+LR E LS I G+ T++DLL IFS FCIGK
Sbjct: 397 EELRLAQEHLSEITGRFTSDDLLGRIFSSFCIGK 430
>gi|325275324|ref|ZP_08141277.1| tRNA modification GTPase TrmE [Pseudomonas sp. TJI-51]
gi|324099572|gb|EGB97465.1| tRNA modification GTPase TrmE [Pseudomonas sp. TJI-51]
Length = 456
Score = 334 bits (856), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 185/470 (39%), Positives = 276/470 (58%), Gaps = 26/470 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT GRGGVGI+RLSG +++ +T L PR A Y F ++ ++D+G+
Sbjct: 8 IAAIATAQGRGGVGIVRLSGPLAAKAGQLITGRT---LTPRHAHYGPFRDEDGLVLDEGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F P+S+TGEDV+EL GHGGP++L MLL C+++G RLA PGEF++RAFLN+K
Sbjct: 65 ALFFPGPNSFTGEDVLELQGHGGPVVLDMLLQRCVQVG----CRLARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+ AA++A+ SL G+FSK ++ L + LI LR +E + DFPEE
Sbjct: 121 LDLAQAEAIADLIEASSSQAARNALRSLQGEFSKRVHGLTEALIALRIYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + + + L ++++L + ++ + AL+R+G+ VV+ G+PN GKSSL N L G
Sbjct: 181 IDFLADGH-VLSMLDTVRRELSTVQREAGQGALLRDGMTVVIAGRPNAGKSSLLNQLAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ + DTAG ++ + VEKIG+ER
Sbjct: 240 EAAIVTDIAGTTRDILREHIHIDGMPLHVVDTAG-------LRATDDHVEKIGVERALKA 292
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNN- 363
+ +D ++ V D+ + +D + + P V + NK D SG + + ++
Sbjct: 293 IGEADRVLLVVDSTAPEASDPFALWPEFLDQRPDPAKVTLIRNKADLSGERVGLEQSDDG 352
Query: 364 IANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKI 422
I LSA G+ LLR+ L + QT ES + AR RH+ +L +A+ +L
Sbjct: 353 HVTITLSAKGNDAGLQLLRDHLKACMGYEQTAESG-FSARRRHLEALRQASEHLEH---- 407
Query: 423 INQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ EL+AEDLR L I G +++DLL IFS FCIGK
Sbjct: 408 -GRAQLTLAGAGELLAEDLRQAQHALGEITGALSSDDLLGRIFSSFCIGK 456
>gi|90194106|gb|ABD92614.1| ThdF [Actinobacillus equuli subsp. haemolyticus]
Length = 436
Score = 334 bits (856), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 190/460 (41%), Positives = 281/460 (61%), Gaps = 31/460 (6%)
Query: 13 TPPGRGGVGIIRLSGKNLWSIVEIVCKKT-KKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
TP GRGGVGI+R+SG + + V K+ K+LKPR A Y F ++ ++D+G+ ++F
Sbjct: 1 TPIGRGGVGILRISG----PLAQEVAKEVLGKELKPRLANYLPFKDQDGTVLDQGIALFF 56
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
KAP+S+TGEDV+EL GHGG +IL +LL L + G+R+A GEF+++AFLN+KLDL
Sbjct: 57 KAPNSFTGEDVLELQGHGGQVILDILLKRILAVK---GVRIARAGEFSEQAFLNDKLDLA 113
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+A++E AA+SA+ SL G+FS IN L+D +I LRT +E + DFP+E +
Sbjct: 114 QAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEEIDF- 172
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L L I ++L + ++ K+ A++R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 173 LADGKIEGHLNDIIRQLNGVRKEAKQGAILREGMKVVIAGRPNAGKSSLLNALAGREAAI 232
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT+IAGTTRD + + I I+ I DTAG +++ +EVEKIGI+R W E++ +
Sbjct: 233 VTNIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVEKIGIQRAWDEIEQA 285
Query: 312 DIIIYVQDARYDKHTDFDKK---IIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++ + D+ F + + P NIPV + NK+D SG + + + I
Sbjct: 286 DHVLLMIDSTEQIAEAFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIR 345
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSP---YLARERHIHSLNEANYYLSCAIKIINQ 425
LSA ++G++LLR L +K+ +SS +LAR RH+ +L A +L + Q
Sbjct: 346 LSAQTKVGVDLLREHL----KKSMGYQSSTEGGFLARRRHLQALETAAEHLERGHIQLTQ 401
Query: 426 SEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR LS I G+ T++DLL NIF
Sbjct: 402 FFAG-----ELLAEELRMVQNALSEITGQFTSDDLLGNIF 436
>gi|167036429|ref|YP_001671660.1| tRNA modification GTPase TrmE [Pseudomonas putida GB-1]
gi|189036205|sp|B0KRC0.1|MNME_PSEPG RecName: Full=tRNA modification GTPase MnmE
gi|166862917|gb|ABZ01325.1| tRNA modification GTPase TrmE [Pseudomonas putida GB-1]
Length = 456
Score = 333 bits (855), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 188/477 (39%), Positives = 275/477 (57%), Gaps = 26/477 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M T I IAT GRGGVGI+RLSG +++ +T L PR A Y F +
Sbjct: 1 MNTVRETIAAIATAQGRGGVGIVRLSGPLAGKAGQLITGRT---LTPRHAHYGPFRDDDG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
++D+G+ ++F P+S+TGEDV+EL GHGGP++L MLL C+++G RLA PGEF++
Sbjct: 58 LVLDEGIALFFPGPNSFTGEDVLELQGHGGPVVLDMLLQRCVQVG----CRLARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G+FSK ++ L + LI LR +E +
Sbjct: 114 RAFLNDKLDLAQAEAIADLIEASSSQAARNALRSLQGEFSKRVHSLTEALIALRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + + + + + L ++ +L + ++ + AL+R+G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDFLADGH-VLSMLDAVRGELSTVQREAGQGALLRDGMTVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N L G + AIVT IAGTTRD + + I I+ + DTAG+ D + + VEKIG
Sbjct: 233 LNQLAGREAAIVTDIAGTTRDILREHIHIDGMPLHVVDTAGLRDTD-------DHVEKIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
+ER + +D ++ V D+ + +D + + P V + NK D SG
Sbjct: 286 VERALKAIGEADRVLLVVDSTAPEASDPFALWPEFLDQRPDPAKVTLIRNKADLSGEHVG 345
Query: 358 INY-KNNIANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYY 415
+ + I LSA G+ LLR+ L + QT ES + AR RH+ +L +A+ +
Sbjct: 346 LEQCDDGHVTITLSAKGDDTGLQLLRDHLKACMGYEQTAESG-FSARRRHLDALRQASEH 404
Query: 416 LSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L +++ EL+AEDLR L I G +++DLL IFS FCIGK
Sbjct: 405 LEH-----GRAQLTLAGAGELLAEDLRQAQHALGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|120556798|ref|YP_961149.1| tRNA modification GTPase TrmE [Marinobacter aquaeolei VT8]
gi|166200483|sp|A1U7J3.1|MNME_MARAV RecName: Full=tRNA modification GTPase MnmE
gi|120326647|gb|ABM20962.1| tRNA modification GTPase trmE [Marinobacter aquaeolei VT8]
Length = 456
Score = 333 bits (855), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 188/477 (39%), Positives = 276/477 (57%), Gaps = 26/477 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M I IAT PG+ GVGI+R+SG +I + + KPR+A Y F +
Sbjct: 1 MQPATDTIAAIATAPGQAGVGIVRVSGPRAMAIARTMLGF---EPKPRYAHYGPFRDRQG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+ID+G+ +YF PHS+TGEDV EL GHGG +IL +LL S+G RLA PGEF++
Sbjct: 58 ELIDEGIGLYFPNPHSFTGEDVFELQGHGGTVILDILLREVC----SLGARLARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI +S+E AA+ A+ S+ G FSK ++ L++ + +LR +E +
Sbjct: 114 RAFLNDKLDLAQAEAIADLIESSSEQAARCAVRSMQGVFSKRVDNLVEAITHLRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + L ++L + +++ +I+ + ++ ++R+G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDF-LADGKVASDLQGLLEQVQQILGEAQQGTILRDGMKVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT+I GTTRD + + I I+ I DTAG+ D + +EVE+IG
Sbjct: 233 LNALAGREAAIVTAIEGTTRDVLREHIHIDGMPLHIIDTAGLRD-------SPDEVEQIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
I R W E++ +D I+ + DA T+ + I P + PV + NK+D SG
Sbjct: 286 IARAWEEIRQADRILLMVDATTTDKTEPHEIWPDFIDQLPRSAPVTVIRNKVDLSGEPLG 345
Query: 358 INYKNNIAN--IYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYY 415
I+ +++ I L+A G+ +LR L + I T E +LAR RH+ +L A
Sbjct: 346 ISAESHQTAPVIRLAAKAAEGLEVLREHLKECIGFASTTEGG-FLARRRHLDALERARDS 404
Query: 416 LSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L + Q++ EL+AEDLR + L I G T ++LL IFS FCIGK
Sbjct: 405 L-----LQGQTQLEGYGAGELLAEDLRAAQDALGEITGHLTPDELLGKIFSSFCIGK 456
>gi|190171286|gb|ACE63713.1| ThdF [Cronobacter muytjensii]
gi|190171288|gb|ACE63714.1| ThdF [Cronobacter muytjensii]
gi|190171292|gb|ACE63716.1| ThdF [Cronobacter muytjensii]
gi|190171294|gb|ACE63717.1| ThdF [Cronobacter muytjensii]
Length = 439
Score = 333 bits (855), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 181/457 (39%), Positives = 272/457 (59%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SG+ + + V K K R+A Y F + +D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRVSGQQARDVAQAVLGKLPKA---RYADYLPFKDADGTALDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWQEIEQA 288
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D TD + I P +P+ V NK D +G I+ N + +
Sbjct: 289 DRVLFMVDGTTTDATDPAQIWPDFIARLPATLPITVVRNKADVTGELPGISEVNGHSLVR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA G+++LR+ L + ++E +LAR RH+ +L A +L + +
Sbjct: 349 LSARTSDGVDVLRSHLKQSMGFDTSMEGG-FLARRRHLQALETAANHLQQGKAQLLGAWA 407
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G-----ELLAEELRLAQQALSEITGEFTSDDLLGRIF 439
>gi|190171262|gb|ACE63701.1| ThdF [Cronobacter dublinensis]
gi|190171264|gb|ACE63702.1| ThdF [Cronobacter dublinensis]
Length = 439
Score = 333 bits (855), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 181/457 (39%), Positives = 271/457 (59%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SG+ + + V K K R+A Y F + +D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRVSGQQARDVAQAVLGKLPKS---RYADYLPFKDADGTALDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWQEIEQA 288
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D TD + I P +P+ V NK D +G I+ N + +
Sbjct: 289 DRVLFMVDGTTTDATDPAQIWPDFIARLPATLPITVVRNKADVTGEAPGISEVNGHSLVR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA G+++LR+ L + +E +LAR RH+ +L A +L + +
Sbjct: 349 LSARTSDGVDVLRSHLKQSMGFDTRMEGG-FLARRRHLQALETAANHLQQGKAQLLGAWA 407
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G-----ELLAEELRLAQQALSEITGEFTSDDLLGRIF 439
>gi|254447523|ref|ZP_05060989.1| tRNA modification GTPase TrmE [gamma proteobacterium HTCC5015]
gi|198262866|gb|EDY87145.1| tRNA modification GTPase TrmE [gamma proteobacterium HTCC5015]
Length = 432
Score = 333 bits (855), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 182/455 (40%), Positives = 268/455 (58%), Gaps = 25/455 (5%)
Query: 20 VGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPHSYTG 79
+GI+R+SG S+ E + + + + +PR+A Y F+ ++D+G+ +YF PHSYTG
Sbjct: 1 MGIVRVSGPQARSMGEQLTRLS--ECRPRYAHYGPFYDSEGQVLDRGISLYFPGPHSYTG 58
Query: 80 EDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVEAIIDL 139
EDV E GHGGP++L++LL S ++G R A PGEFT+RAFLN+K+DL Q EA+ DL
Sbjct: 59 EDVFEFQGHGGPVVLNLLLKSVFKLGA----RPAQPGEFTERAFLNDKMDLAQAEAVADL 114
Query: 140 INASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELILNKNDFFN 199
I ++TE AA +A SLSG FS I LLD LI +R IE + DFPEE + L ++
Sbjct: 115 IESTTEQAALAATRSLSGAFSSRIQTLLDSLIYIRLYIEAALDFPEEEIDF-LGDSELAQ 173
Query: 200 ELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTT 259
+ +++ + + Q ++ L+R G++VVL+GQPN GKSSL N+L G D AIVT +AGTT
Sbjct: 174 RMQQLRLDVASVKQSVRQGKLLREGMSVVLLGQPNAGKSSLLNALAGDDTAIVTDVAGTT 233
Query: 260 RDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQD 319
RD + + I ++ I DTAG+ D + VE G+ R W ++ +D ++ + D
Sbjct: 234 RDVLQQAIHLDGLPLNIIDTAGLRDTQ-------DVVEAEGVRRAWAAVEQADRVLLLID 286
Query: 320 A-RYDKHTDFDKKIIKNFPMNIP-VIYVWNKIDYSGHQKNINYKNNIANIYLSASKRIGI 377
A R H D+ I+ + Y+WNKID G I K+ ++ +SAS GI
Sbjct: 287 AERGFDHG--DQAIVDALDRHSTNFDYLWNKIDRLGQAPKIEKKSGQWHLSISASLGEGI 344
Query: 378 NLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELI 437
+LL L + + Q E ++AR+RHI SL A+ + CA ++ EL
Sbjct: 345 DLLSKHLKEAMGYKQETEGL-FIARQRHIESLEAASKAIECAADQLSVGAG------ELA 397
Query: 438 AEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
AE+LR E +S I G+ +++DLL IFS+FCIGK
Sbjct: 398 AEELRQAQESMSQITGEFSSDDLLGEIFSRFCIGK 432
>gi|190171186|gb|ACE63663.1| ThdF [Enterobacter asburiae]
Length = 439
Score = 333 bits (855), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 187/458 (40%), Positives = 272/458 (59%), Gaps = 25/458 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATP GRGGVGI+R+SG + E V K K PR+A Y F + +D+G+ ++F
Sbjct: 3 ATPRGRGGVGILRISGLKAREVAEAVLGKLPK---PRYADYLPFKDTDGTPLDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIAKPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNQVMNDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGIERAWQEIEQA 288
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D D + I P +P+ V NK D +G I+ N + I
Sbjct: 289 DRVLFMVDGTTTDAVDPAEIWPDFIARLPAKLPITVVRNKADVTGETLGISDVNGHSLIR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNE-ANYYLSCAIKIINQSE 427
LSA G++ LRN L + ++E +LAR RH+ +L E AN+ + ++I
Sbjct: 349 LSARTGEGVDDLRNHLKQSMGFDTSMEGG-FLARRRHLQALEEAANHLVQGKAQLIGAWA 407
Query: 428 KNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G------ELLAEELRLAQQNLSEITGEFTSDDLLGRIF 439
>gi|407698259|ref|YP_006823047.1| tRNA modification GTPase TrmE [Alcanivorax dieselolei B5]
gi|407255597|gb|AFT72704.1| tRNA modification GTPase TrmE [Alcanivorax dieselolei B5]
Length = 458
Score = 333 bits (855), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 183/478 (38%), Positives = 275/478 (57%), Gaps = 31/478 (6%)
Query: 3 TKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNI 62
T + I+ IAT PGRGGVG++RLSG I V + L PR A + F + +
Sbjct: 4 TDSDTIVAIATAPGRGGVGVVRLSGDGALEIAAGVVGD--RPLHPRQAHFRRFRDERGEV 61
Query: 63 IDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRA 122
ID+GLV+ F P S+TGEDV+E GHGGP++L ML+ +CL G R A PGEF++RA
Sbjct: 62 IDEGLVLSFPGPGSFTGEDVVEFQGHGGPVVLDMLVRACLYHGA----RQARPGEFSQRA 117
Query: 123 FLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFD 182
FLN+KLDL Q EAI DL++A T+++A++A+ SL G FS+ +N L+++LI LR +E + D
Sbjct: 118 FLNDKLDLAQAEAIADLVDAGTQASARAALRSLQGAFSEEVNRLVEQLIQLRIYVEAAID 177
Query: 183 FPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFN 242
FPEE + L+ +L + +L +++ ++ L+R GL +V+ G+PN GKSSL N
Sbjct: 178 FPEEEIDF-LSDGRVAADLRALLGQLDRVLATARQGRLVREGLTLVIAGRPNAGKSSLMN 236
Query: 243 SLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302
L G D AIVT + GTTRD + ++IQI+ + DTAG ++++ + VE+ GI
Sbjct: 237 RLAGFDAAIVTEVPGTTRDVLRESIQIDGLPLNVIDTAG-------LRESPDRVEQEGIR 289
Query: 303 RTWVELKNSDIIIYVQDARYDKHT--------DFDKKIIKNFPMNIPVIYVWNKIDYSGH 354
R + E++ +D ++ V D++ +K ++N + +P+ V NK D SG
Sbjct: 290 RAYEEMRKADRLLVVVDSQTGVEALKEPALLLPDSQKQLEN--LELPITIVLNKADLSGM 347
Query: 355 QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ + +SA+ G++ LR+ L + Q+ + SP+ AR RHI +L +A
Sbjct: 348 EPG-PLDGHPDTFVISATSGEGLDALRDH-LKAVAGYQSTDESPFSARRRHITALEQALA 405
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L + + EL+AEDLR + L I G T +DLL IFS FCIGK
Sbjct: 406 ALDKGQRQLGDHAAG-----ELLAEDLRAAQKALEDITGAFTADDLLGRIFSSFCIGK 458
>gi|374314441|ref|YP_005060870.1| GTP-binding protein [Serratia symbiotica str. 'Cinara cedri']
gi|363988667|gb|AEW44858.1| GTP-binding protein [Serratia symbiotica str. 'Cinara cedri']
Length = 454
Score = 333 bits (855), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 194/469 (41%), Positives = 277/469 (59%), Gaps = 25/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ ATPPGRGG+GI+R+SG + + K K PR+A Y F N +D+G+
Sbjct: 7 IVAQATPPGRGGIGILRISGSKTKEVALAILGKLPK---PRYADYLPFRDINGITLDQGI 63
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F +PHS+TGEDV+ELHGHGG +IL +LL L I +R+A PGEF++RAF+NNK
Sbjct: 64 ALWFPSPHSFTGEDVLELHGHGGEVILDLLLKHVLIISD---VRIARPGEFSERAFINNK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLINA++E AA+SA SL G FS I L++KL +RT IE +FP+E+
Sbjct: 121 IDLAQAEAIADLINANSEQAARSATNSLQGVFSNRIYQLIEKLTYIRTSIEAEINFPDED 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
L L+ +L + L + + +++R G+ VV+ G PN GKSSL N+L G
Sbjct: 181 INL-LSSEKIETQLNNMMADLDSVYCAASQGSILREGMKVVITGLPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ + + N+VE+IGIER W E
Sbjct: 240 NTAIVTDIAGTTRDILREYINIDGITVHIVDTAGLRNAS-------NKVERIGIERAWSE 292
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D T+ ++ I P N+P+ + NK D + + I +
Sbjct: 293 IEQADRVLFMIDGAAVTATESIKISQEFIAKIPKNLPITIIRNKADITKEKLGITEIDGY 352
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYL-SCAIKII 423
+ I LS G+NL+R L I T IE +LAR RH+ +L +A Y+L KII
Sbjct: 353 SLICLSTRTSAGVNLIREHLKQSIGFTGNIEGG-FLARRRHLQALEQAKYHLIQGKEKII 411
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
N EL+AE+LR H L+ I G+ +++DLL IFS FCIGK
Sbjct: 412 NTYVN------ELLAEELRLAHVALNKITGEISSDDLLKQIFSNFCIGK 454
>gi|336313987|ref|ZP_08568909.1| tRNA modification GTPase TrmE [Rheinheimera sp. A13L]
gi|335881926|gb|EGM79803.1| tRNA modification GTPase TrmE [Rheinheimera sp. A13L]
Length = 454
Score = 333 bits (855), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 184/468 (39%), Positives = 274/468 (58%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I AT GR GVGIIR+SG + ++ + K K PR A Y F +D+G+
Sbjct: 7 IAAQATATGRAGVGIIRVSGPAVSAVASAILGKVPK---PRTAEYLPFLDAEQQTLDQGI 63
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P+S+TGEDV+EL GHGGP++L MLL LE+ +R+A PGEF++RAFLN+K
Sbjct: 64 ALYFPGPNSFTGEDVLELQGHGGPVLLDMLLRRVLEMKD---VRIARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+AS+E AA+SAM SL G+FS+ I+ L++K+I LR +E + DFP+E
Sbjct: 121 LDLTQAEAIADLIDASSEQAARSAMHSLQGEFSRKIHDLVEKVIYLRIYVEAAIDFPDEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L I L I +Q + +++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDF-LSDGKVAGDLADIISDLAGIQKQATQGSILREGMRVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG +++ ++VE+IGIER W E
Sbjct: 240 EAAIVTEIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREATDKVEQIGIERAWQE 292
Query: 308 LKNSDIIIYVQDARYDKHT---DFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D T D + P ++ + + NK D +G + +
Sbjct: 293 IEQADRVLFMVDGTTTNATSPADIWPDFMSRLPKDLGLTVIRNKADLTGETTGASQDGDY 352
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
++SA GI LR+ L + E S ++AR RH+ +L A +L+ I
Sbjct: 353 PVFHISAKTNSGIEELRDHLKACMGFDANTEGS-FIARRRHLDALERAAEHLA-----IG 406
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ + EL+AE+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 407 DAQLHNHLAGELLAEELRLTQQHLNEITGEFSSDDLLGRIFSSFCIGK 454
>gi|152988592|ref|YP_001351679.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa PA7]
gi|452877534|ref|ZP_21954812.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa VRFPA01]
gi|166234809|sp|A6VF44.1|MNME_PSEA7 RecName: Full=tRNA modification GTPase MnmE
gi|150963750|gb|ABR85775.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa PA7]
gi|452185755|gb|EME12773.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa VRFPA01]
Length = 455
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 190/464 (40%), Positives = 269/464 (57%), Gaps = 29/464 (6%)
Query: 15 PGRGGVGIIRLSGKNLWSI-VEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKA 73
PGRGGVGI+R+SG I VE+ + ++LKPR A Y F +ID+GL +YF
Sbjct: 15 PGRGGVGIVRVSGPLAGRIAVEV----SGRELKPRHAHYGPFLDGGGQVIDEGLSLYFPG 70
Query: 74 PHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQV 133
P+S+TGEDV+EL GHGGP++L +L+ CLE+G R A PGEF++RAFLN+KLDL Q
Sbjct: 71 PNSFTGEDVLELQGHGGPVVLDLLVQRCLELGA----RQARPGEFSERAFLNDKLDLAQA 126
Query: 134 EAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELILN 193
EAI DLI AS+E AA++A+ SL G+FS+ ++ L ++LI+LR +E + DFPEE + + +
Sbjct: 127 EAIADLIEASSEQAARNALRSLQGEFSRRVHALTEQLISLRIYVEAAIDFPEEEIDFLAD 186
Query: 194 KNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVT 253
+ L K++ +L + ++ + AL+R+G+ VV+ G+PN GKSSL N+L G + AIVT
Sbjct: 187 GH-VLGLLEKVRTELSTVRREASQGALLRDGMTVVIAGRPNAGKSSLLNALAGREAAIVT 245
Query: 254 SIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDI 313
IAGTTRD + + I I+ + DTAG+ D + VEKIG+ER + +D
Sbjct: 246 DIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTE-------DHVEKIGVERALKAIGEADR 298
Query: 314 IIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI-NYKNNIANIYL 369
++ V DA + D + + P V + NK D S + + I L
Sbjct: 299 VLLVVDATAPEAADPFSLWPEFLDQRPEPGKVTLIRNKADLSTEAIGLEESADGHVTITL 358
Query: 370 SASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCA-IKIINQSEK 428
SA G+ LLR L + QT ES + AR RH+ +L A L ++I+
Sbjct: 359 SARTNAGLELLREHLKACMGFEQTAESG-FSARRRHLEALRLAGNALEHGHAQLIHNGAG 417
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
EL+AEDLR + L I G T +DLL IFS FCIGK
Sbjct: 418 ------ELLAEDLRQAQQHLGEITGAFTPDDLLGRIFSSFCIGK 455
>gi|313202487|ref|YP_004041145.1| tRNA modification GTPase TrmE [Methylovorus sp. MP688]
gi|312441803|gb|ADQ85909.1| tRNA modification GTPase TrmE [Methylovorus sp. MP688]
Length = 446
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 198/465 (42%), Positives = 272/465 (58%), Gaps = 25/465 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT PG GG+G++R+SG I V PR A Y F +ID G+
Sbjct: 7 IAAIATAPGSGGIGVVRISGPASAQIAAAVLGHCPP---PRHAAYLPFKEAGGQLIDSGI 63
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
I++ PHSYTGEDV+EL HGGP ++ +LL C +G R A PGEFT+RAFLN+K
Sbjct: 64 AIFYAGPHSYTGEDVLELQAHGGPALMQLLLLRC----LQLGARQAEPGEFTRRAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EA+ D+INA+T AA+SA+ SLSG+FS+ I LL+ LINLR +E DFP+E+
Sbjct: 120 LDLAQAEAVADVINAATAEAARSAVRSLSGEFSRYIQDLLESLINLRMYVEACLDFPDED 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ I ++ +L I L + + ++ L+R G+ VVL+GQPNVGKSSL N L G
Sbjct: 180 IDFI-SQGRVAEKLQNITDALELVFKGARQGNLLREGIQVVLVGQPNVGKSSLMNQLAGE 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+VAIVT IAGTTRD I +QI + DTAG +++ +EVEK GI RTW
Sbjct: 239 EVAIVTPIAGTTRDTIKNVVQIEGVPLHLIDTAG-------LRETEDEVEKQGIARTWRA 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANI 367
L+N++ + + DA + T+ +K I++ P N+P I+V NKID Q ++
Sbjct: 292 LENANAALLLVDAAHGI-TETEKSILERLPANLPKIWVHNKIDLHSEQPRQREHEGELHL 350
Query: 368 YLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSE 427
Y+SA +G++ L+ LL I Q S ++AR RH+ +L +L A + Q
Sbjct: 351 YISAKLGLGLDALKAHLLK-IAGWQPAGESIFMARTRHLQALQMVQGHLQNAAVYLEQP- 408
Query: 428 KNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
EL+AE+LR LSSI G+ T +DLL IFS+FCIGK
Sbjct: 409 -------ELLAEELRLAQHALSSITGEFTPDDLLGEIFSRFCIGK 446
>gi|190171240|gb|ACE63690.1| ThdF [Enterobacter sp. KM877_04]
Length = 439
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 186/457 (40%), Positives = 269/457 (58%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRISGLKAREVAEAVLGKLPK---PRYADYLPFKDTDGTPLDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILML---PGLRIAKPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNSVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGIERAWQEIELA 288
Query: 312 DIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D D I P +P+ V NK D +G I+ N + I
Sbjct: 289 DRVLFMVDGTTTDAVDPADIWPDFIARLPAKLPITVVRNKADVTGETLGISEVNGHSLIR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA G++ LRN L + ++E +LAR RH+ +L +A +L + +
Sbjct: 349 LSARTGEGVDDLRNHLKQSMGFDTSMEGG-FLARRRHLQALEDAARHLDQGKAQLLGAWA 407
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G-----ELLAEELRLAQQNLSEITGEFTSDDLLGRIF 439
>gi|90194120|gb|ABD92621.1| ThdF [Actinobacillus pleuropneumoniae serovar 8 str. 405]
Length = 436
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 190/460 (41%), Positives = 281/460 (61%), Gaps = 31/460 (6%)
Query: 13 TPPGRGGVGIIRLSGKNLWSIVEIVCKKT-KKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
TP GRGGV I+R+SG + + V K+ K+LKPR A Y F ++ ++D+G+ ++F
Sbjct: 1 TPIGRGGVSILRISG----PLAQEVAKEVLGKELKPRLANYLPFKDQDGTVLDQGIALFF 56
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
KAP+S+TGEDV+EL GHGG +IL +LL L+I G+R+A GEF+++AFLN+KLDL
Sbjct: 57 KAPNSFTGEDVLELQGHGGQVILDILLKRILKIK---GIRIARAGEFSEQAFLNDKLDLA 113
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+A++E AA+SA+ SL G+FS IN L+D +I LRT +E + DFP+E +
Sbjct: 114 QAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEEIDF- 172
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L L I ++L + ++ K+ A++R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 173 LADGKIEGHLNDIIRQLNGVRKEAKQGAILREGMKVVIAGRPNAGKSSLLNALAGREAAI 232
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT+IAGTTRD + + I I+ I DTAG +++ +EVEKIGI+R W E++ +
Sbjct: 233 VTNIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVEKIGIQRAWDEIEQA 285
Query: 312 DIIIYVQDARYDKHTDFDKK---IIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++ + D+ F + + P NIPV + NK+D SG + + + I
Sbjct: 286 DHVLLMIDSTEQTAEAFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIR 345
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSP---YLARERHIHSLNEANYYLSCAIKIINQ 425
LSA ++G++LLR L +K+ +SS +LAR RH+ +L A +L + Q
Sbjct: 346 LSAQTKVGVDLLREHL----KKSMGYQSSTEGGFLARRRHLQALETAAEHLERGHIQLTQ 401
Query: 426 SEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR LS I G+ T++DLL NIF
Sbjct: 402 FFAG-----ELLAEELRMVQNALSEITGQFTSDDLLGNIF 436
>gi|388544102|ref|ZP_10147391.1| tRNA modification GTPase TrmE [Pseudomonas sp. M47T1]
gi|388277930|gb|EIK97503.1| tRNA modification GTPase TrmE [Pseudomonas sp. M47T1]
Length = 456
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 190/470 (40%), Positives = 275/470 (58%), Gaps = 26/470 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT GRGGVGI+R+SG + + +QL PR A Y + ++ID+GL
Sbjct: 8 IAAIATAQGRGGVGIVRISGPLAGAAAQ---AIAGRQLTPRHAHYGPMRTADGDVIDEGL 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF P+S+TGEDV+EL GHGGP++L MLL CLE+G RLA PGEF++RAFLN+K
Sbjct: 65 ALYFPGPNSFTGEDVLELQGHGGPVVLDMLLQRCLELG----CRLARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+ AA++A+ SL G FS+ ++ L +KLI LR +E + DFPEE
Sbjct: 121 LDLAQAEAIADLIEASSAQAARNAVRSLQGAFSRRVDNLTEKLIALRIYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ + + + + L +++ L ++++ + AL+R+G+ VV+ G+PN GKSSL N L G
Sbjct: 181 IDFLADGH-VLSMLDDVRENLSTVMREAGQGALLRDGMTVVIAGRPNAGKSSLLNLLAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ + DTAG+ D + ++VEKIG++R
Sbjct: 240 EAAIVTDIAGTTRDILREHIHIDGMPLHVVDTAGLRDTD-------DQVEKIGVQRALKA 292
Query: 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN-INYKNN 363
+ +D ++ V DA + +D + ++ P V + NK D +G + I +
Sbjct: 293 IGEADRVLLVVDATAPEASDPFALWPEFLEVRPQMSKVTLIRNKADLTGETVDMITSADG 352
Query: 364 IANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKI 422
I LSA + G++LLR L + QT ESS + AR RH+ +L A+ L
Sbjct: 353 HVTISLSAKDEGQGLDLLREHLKACMGYEQTAESS-FSARRRHLDALRHASTALEH---- 407
Query: 423 INQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AEDLR L I G +++DLL IFS FCIGK
Sbjct: 408 -GRDQLTLAGAGELLAEDLRQAQHCLGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|90194104|gb|ABD92613.1| ThdF [Actinobacillus equuli subsp. equuli]
Length = 436
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 189/460 (41%), Positives = 280/460 (60%), Gaps = 31/460 (6%)
Query: 13 TPPGRGGVGIIRLSGKNLWSIVEIVCKKT-KKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
TP GRGGVGI+R+SG + + V K+ K+L PR A Y F ++ ++D+G+ ++F
Sbjct: 1 TPIGRGGVGILRISG----PLAQEVAKEVLGKELNPRLANYLPFKDQDGTVLDQGIALFF 56
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
KAP+S+TGEDV+EL GHGG +IL +LL L + G+R+A GEF+++AFLN+KLDL
Sbjct: 57 KAPNSFTGEDVLELQGHGGQVILDILLKRILAVK---GVRIARAGEFSEQAFLNDKLDLA 113
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+A++E AA+SA+ SL G+FS IN L+D +I LRT +E + DFP+E +
Sbjct: 114 QAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEEIDF- 172
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L L I ++L + ++ K+ A++R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 173 LADGKIEGHLNDIIRQLNGVRKEAKQGAILREGMKVVIAGRPNAGKSSLLNALAGREAAI 232
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT+IAGTTRD + + I I+ I DTAG +++ +EVEKIGI+R W E++ +
Sbjct: 233 VTNIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVEKIGIQRAWDEIEQA 285
Query: 312 DIIIYVQDARYDKHTDFDKK---IIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++ + D+ F + + P NIPV + NK+D SG + + + I
Sbjct: 286 DHVLLMIDSTEQTAEAFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIR 345
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSP---YLARERHIHSLNEANYYLSCAIKIINQ 425
LSA ++G++LLR L +K+ +SS +LAR RH+ +L A +L + Q
Sbjct: 346 LSAQTKVGVDLLREHL----KKSMGYQSSTEGGFLARRRHLQALETAAEHLERGHIQLTQ 401
Query: 426 SEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR LS I G+ T++DLL NIF
Sbjct: 402 FFAG-----ELLAEELRMVQNALSEITGQFTSDDLLGNIF 436
>gi|90194094|gb|ABD92608.1| ThdF [Actinobacillus ureae ATCC 25976]
Length = 436
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 189/460 (41%), Positives = 280/460 (60%), Gaps = 31/460 (6%)
Query: 13 TPPGRGGVGIIRLSGKNLWSIVEIVCKKT-KKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
TP GRGGVGI+R+SG + + V K+ K+LKPR A Y F ++ ++D+G+ ++F
Sbjct: 1 TPIGRGGVGILRISG----PLAQEVAKEVLGKELKPRLANYLPFKDQDGTVLDQGIALFF 56
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
KAP+S+TGEDV+EL GHGG +IL +LL L + G+R+A GEF+++AFLN+KLDL
Sbjct: 57 KAPNSFTGEDVLELQGHGGQMILDILLKRILAVK---GVRIARAGEFSEQAFLNDKLDLA 113
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+A++E AA+SA+ SL G+FS IN L+D +I LRT +E + DFP+E +
Sbjct: 114 QAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEEIDF- 172
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L L I ++L + ++ K+ A++R G+ VV+ G+PN GKSSL N+L G D AI
Sbjct: 173 LADGKIEGHLNDIIRQLNGVRKEAKQGAILREGMKVVIAGRPNAGKSSLLNALAGRDAAI 232
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT+IAGTTRD + + I I+ I DTAG +++ +EVE+IGI+R W E++ +
Sbjct: 233 VTNIAGTTRDVLCEHIHIDGMPLHIIDTAG-------LREASDEVERIGIQRAWDEIEQA 285
Query: 312 DIIIYVQDARYDKHTDFDKK---IIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++ + D+ F + + P NIPV + NK+D S + + + I
Sbjct: 286 DHVLLMIDSTEQTAEAFKTEWADFLAKLPQNIPVTVIRNKVDLSSEAEGLQELDGFTLIR 345
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSP---YLARERHIHSLNEANYYLSCAIKIINQ 425
LSA ++G++LLR L +K+ +SS +LAR RH+ +L A +L + Q
Sbjct: 346 LSAQTKVGVDLLREHL----KKSMGYQSSTEGGFLARRRHLQALETAAEHLERGHIQLTQ 401
Query: 426 SEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR LS I G+ T++DLL NIF
Sbjct: 402 FFAG-----ELLAEELRMVQNALSEITGQFTSDDLLGNIF 436
>gi|190171266|gb|ACE63703.1| ThdF [Cronobacter dublinensis]
Length = 439
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 181/457 (39%), Positives = 271/457 (59%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SG+ + + V K K R+A Y F + +D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRVSGQQARDVAQAVLGKLPKA---RYADYLPFKDADGTALDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWQEIEQA 288
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D TD + I P +P+ V NK D +G I+ N + +
Sbjct: 289 DRVLFMVDGTTTNATDPAQIWPDFIARLPATLPITVVRNKADVTGEAPGISEVNGHSLVR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA G+++LR+ L + +E +LAR RH+ +L A +L + +
Sbjct: 349 LSARTSDGVDVLRSHLKQSMGFDTRMEGG-FLARRRHLQALETAANHLQQGKAQLLGAWA 407
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G-----ELLAEELRLAQQALSEITGEFTSDDLLGRIF 439
>gi|254428001|ref|ZP_05041708.1| tRNA modification GTPase TrmE [Alcanivorax sp. DG881]
gi|196194170|gb|EDX89129.1| tRNA modification GTPase TrmE [Alcanivorax sp. DG881]
Length = 456
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 189/484 (39%), Positives = 283/484 (58%), Gaps = 41/484 (8%)
Query: 2 LTKNSP--IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKN 59
+ +SP I+ IAT PGRGGVG++RLSG SI +V + + L PR A + F +
Sbjct: 1 MQTSSPDTIVAIATAPGRGGVGVVRLSGPQALSIASLVVGE--QSLSPRVAHFRRFRDQA 58
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFT 119
++D+GLVI F APHS+TGEDV+EL GHGGP+IL ML+++C+ G A GEF+
Sbjct: 59 GEVLDEGLVITFPAPHSFTGEDVVELQGHGGPVILDMLVAACIAAGARQ----ARAGEFS 114
Query: 120 KRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEF 179
+RAFLN+K+DL Q EAI DLI+A T ++A++A+ SL G FS +N L++ LI LR +E
Sbjct: 115 QRAFLNDKMDLTQAEAIADLIDAGTSASARAALHSLQGVFSDEVNQLVEALIGLRIYVEA 174
Query: 180 SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
+ DFPEE + L+ ++L ++++ L+++ + + L+R G+ +V+ G+PN GKSS
Sbjct: 175 AIDFPEEEIDF-LSDGKVASDLTAVRRQCLRVLDEANQGRLVREGMTLVIAGKPNAGKSS 233
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N+L G D AIVT IAGTTRD + ++IQ++ + DTAG+ D + + VE+
Sbjct: 234 LMNALAGFDAAIVTDIAGTTRDVLRESIQLDGMPLNLIDTAGLRD-------SADVVEQE 286
Query: 300 GIERTWVELKNSDIIIYVQDARYDKHTDFD---------KKIIKNFPMNIPVIYVWNKID 350
GI R + E++ +D ++ + D+R D D + ++ ++N + +PV V NK D
Sbjct: 287 GIRRAYAEMRKADRLLVMVDSR-DSEGDINDIHSLLPQSQQQLEN--LELPVTVVLNKAD 343
Query: 351 YSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLN 410
SG + +SA+ G+ LR L D Q S + AR RHI +L
Sbjct: 344 LSGLPAG---QREDGAFVISAASGDGLEALRRHLKD-AAGYQGEGQSRFSARRRHITALE 399
Query: 411 EANYYLSCAIKIINQSEKNFEKNL--ELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQF 468
+ A+ ++ E+ + EL+AEDLR + L I G T +DLL IFS F
Sbjct: 400 Q-------ALAALDSGERQLHGHAAGELLAEDLRAAQKALEEITGTFTADDLLGRIFSSF 452
Query: 469 CIGK 472
CIGK
Sbjct: 453 CIGK 456
>gi|220936472|ref|YP_002515371.1| tRNA modification GTPase TrmE [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|219997782|gb|ACL74384.1| tRNA modification GTPase TrmE [Thioalkalivibrio sulfidophilus
HL-EbGr7]
Length = 446
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 186/474 (39%), Positives = 270/474 (56%), Gaps = 36/474 (7%)
Query: 5 NSP---IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
+SP I IATPPG GGVG++R+SG N ++ + + PR ATY+ F +
Sbjct: 3 DSPEDTIAAIATPPGFGGVGVVRISGPNTAALARAILGRLPA---PRHATYAPFLGEQGE 59
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+D G+ ++F P SYTGED +EL GHGGP++L +LLS CL ++G R A PGEFT+R
Sbjct: 60 TLDDGIALFFPGPRSYTGEDTLELQGHGGPVVLDLLLSRCL----ALGCRAARPGEFTER 115
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN +LDL Q EA+ DLI A + AA+SA +L G S +N LLD L LR +E +
Sbjct: 116 AFLNGRLDLAQAEAVADLIEAGSAQAARSARRALEGALSHEVNALLDALTGLRVSVEAAL 175
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFP+E+ + IL + L + ++ ++I+ + AL+R GL +V+ G+PN GKSSL
Sbjct: 176 DFPDEDVD-ILREAQVQARLADLSGRIDRLIRGAAQGALLREGLRLVIAGRPNAGKSSLL 234
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N LV + AIVT I GTTRD + +T+ ++ + DTAG ++++ + VE+ GI
Sbjct: 235 NRLVRREAAIVTHIPGTTRDVLRETVSLDGLPLHLVDTAG-------LRESDDPVEQEGI 287
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYK 361
R W E++ +D ++ V D + + + I P ++PVI V NKID +G + K
Sbjct: 288 RRAWAEIEAADAVLLVVDDALGEGEE-EAAIRARLPGHLPVICVHNKIDLTG---RVPGK 343
Query: 362 NNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP---YLARERHIHSLNEANYYLSC 418
+YLSA G++ LR L K Q S +LAR RH+ +L +++
Sbjct: 344 QG-GVLYLSAQDGQGVDSLREHL-----KAQAGFSGGEGLFLARRRHLDALTRTAGHVAT 397
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
A + EL+AEDLR E L I G+ +++DLL IFS FCIGK
Sbjct: 398 ARDAL-----AVGAGPELVAEDLRLAQETLGEITGRFSSDDLLGRIFSTFCIGK 446
>gi|303256375|ref|ZP_07342389.1| tRNA modification GTPase TrmE [Burkholderiales bacterium 1_1_47]
gi|331001498|ref|ZP_08325116.1| tRNA modification GTPase TrmE [Parasutterella excrementihominis YIT
11859]
gi|302859866|gb|EFL82943.1| tRNA modification GTPase TrmE [Burkholderiales bacterium 1_1_47]
gi|329568227|gb|EGG50044.1| tRNA modification GTPase TrmE [Parasutterella excrementihominis YIT
11859]
Length = 463
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 202/479 (42%), Positives = 286/479 (59%), Gaps = 26/479 (5%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKT--KKQLKPRFATYSSFFCKN 59
L K SPII IAT G GVGI+R+SG+ V+ + +K K++KPR+A
Sbjct: 3 LVKTSPIIAIATGNGNAGVGIVRISGEE--EDVKALFQKMFPGKEIKPRYAELLPIRDTQ 60
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFT 119
I+D G+VIYF+AP SYTGE V+EL HGG ++L+ ++ L GK GLR A+PGEFT
Sbjct: 61 GQILDTGIVIYFRAPFSYTGESVLELQVHGGRVLLNWIVQEVLIFGKEFGLRQALPGEFT 120
Query: 120 KRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEF 179
+RAFLN K+DL+Q EA+ DLI A++ +AAK+A SL+G+FS +N L D LINLR +E
Sbjct: 121 ERAFLNGKIDLVQAEAVADLIEANSRNAAKAASRSLTGEFSNKVNALNDALINLRVEVEA 180
Query: 180 SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
DFPEE + L++ +L I+ +L ++ ++ ++R+GL V L+G+ NVGKSS
Sbjct: 181 ILDFPEEEIDF-LSEYQSQEKLEDIQNRLESVLDSARQGEILRDGLRVALVGETNVGKSS 239
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N L G ++AIV+ IAGTTRDKI + I+ F DTAGI + +I E+I
Sbjct: 240 LLNYLAGEEIAIVSDIAGTTRDKIQTDLIISGVPFHFVDTAGIRETEDRI-------EQI 292
Query: 300 GIERTWVELKNSDIIIYVQDARYDKHTDFDK-----KIIKNFPMNIPVIYVWNKIDY-SG 353
GIERT E+ +D+I+ ++D R ++ + D K+IK ++P+I V NK+D S
Sbjct: 293 GIERTKQEISKADVILEIRDIRDQQNKNKDSMQTALKMIKG--KDVPIITVLNKVDLIST 350
Query: 354 HQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEAN 413
N + I SA G+ L++ LL L ++ S Y+ARERHIH+L
Sbjct: 351 PLPNTKDVSRGTIIETSAVTGKGMQELKSELLKLAGFSEN--QSIYMARERHIHNLLNVK 408
Query: 414 YYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L A +N + LEL AE+LR ++L I GK +++DLL IFS FCIGK
Sbjct: 409 ESLKRAASYLNST----SPQLELFAEELRGASDELGEITGKISSDDLLGKIFSGFCIGK 463
>gi|350553929|ref|ZP_08923081.1| tRNA modification GTPase mnmE [Thiorhodospira sibirica ATCC 700588]
gi|349789422|gb|EGZ43377.1| tRNA modification GTPase mnmE [Thiorhodospira sibirica ATCC 700588]
Length = 450
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 182/476 (38%), Positives = 273/476 (57%), Gaps = 30/476 (6%)
Query: 1 MLTKNSP---IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKP-RFATYSSFF 56
ML ++P I IAT PG+GGVGIIR+SG I++ + T K L P R A + F
Sbjct: 1 MLLDHAPTDTIAAIATAPGKGGVGIIRISGPQAPQILQGI---TGKALPPARQARRAWFI 57
Query: 57 CKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPG 116
+D GLV++F AP SYTGEDV+EL GHGGP++L +LL+ CL ++G R+A PG
Sbjct: 58 DAQRAPLDDGLVLWFPAPASYTGEDVVELQGHGGPVVLDLLLARCL----ALGARMARPG 113
Query: 117 EFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTL 176
EFT+RAFLN +LDL Q EA+ DLI A + AA+ A SL+G+FS+ + L ++L LR
Sbjct: 114 EFTERAFLNGQLDLAQAEAVADLIEAGSAQAARCAARSLAGEFSRRVEPLFEQLTALRVY 173
Query: 177 IEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVG 236
+E + DFP+E+ EL L+ L + + L + + ++ L++ G+++V+ G PN G
Sbjct: 174 VEAALDFPDEDVEL-LHHGAIGERLRQTQDSLHALTRSAQQGKLLQEGIHLVIAGLPNAG 232
Query: 237 KSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEV 296
KSSL N+L + AIVT I GTTRD + + I + + DTAG ++++ + +
Sbjct: 233 KSSLLNALAQREAAIVTDIPGTTRDLVREWISLEGLPLHLVDTAG-------LRESSDPI 285
Query: 297 EKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356
E+ GI R W ++ +D+++ V D + + I P +PV+ V NKID SG
Sbjct: 286 EQEGIRRAWQAIEQADLVLLVIDDTLGEGA-AEAAIRARLPARLPVLSVHNKIDLSGQPA 344
Query: 357 NINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYL 416
+ + IY+SA + ++LLR + + Q ++AR RH+++L +L
Sbjct: 345 GVREE----RIYVSAKQHDSLHLLRERIKQQVGYEQCSNEGLFMARRRHLNALAHTAQHL 400
Query: 417 SCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
A ++Q EL+AE+LR E L I G+ T++DLL IFS FCIGK
Sbjct: 401 QQANTHLHQ------HTAELLAEELRLAQEALGEITGRFTSDDLLGRIFSSFCIGK 450
>gi|410641025|ref|ZP_11351550.1| tRNA modification GTPase mnmE [Glaciecola chathamensis S18K6]
gi|410139385|dbj|GAC09737.1| tRNA modification GTPase mnmE [Glaciecola chathamensis S18K6]
Length = 460
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 190/472 (40%), Positives = 282/472 (59%), Gaps = 31/472 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKP-RFATYSSFFCKNNNIIDKG 66
I+ AT GRGGVGI+R+SG ++ V ++ + P R A Y F +D+G
Sbjct: 13 IVAQATASGRGGVGIVRVSG----TLAAKVAEQIIGHVPPVRNAQYVPFVSNTGEALDQG 68
Query: 67 LVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNN 126
+ +YFKAPHS+TGEDV+EL GHGG ++L ML+ + L+I +RLA PGEF++RA+LN+
Sbjct: 69 IALYFKAPHSFTGEDVLELQGHGGQVVLDMLIKATLQIPN---VRLARPGEFSERAYLND 125
Query: 127 KLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEE 186
KLDL Q EAI DLI+AS+E AA+ A+ SL G+FS N L++ L +LR +E + DFP+E
Sbjct: 126 KLDLAQAEAIADLIDASSEQAARGALRSLQGEFSTQTNHLVELLTHLRIYVEAAIDFPDE 185
Query: 187 NQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVG 246
+ L+ N+L I +L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G
Sbjct: 186 EIDF-LSDGKVQNDLSAITAQLSAVKNKAQQGSLLREGMRVVIAGRPNAGKSSLLNALAG 244
Query: 247 SDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWV 306
D AIVT+IAGTTRD + + I I+ I DTAG+ D + +EVE+IGIER W
Sbjct: 245 RDAAIVTAIAGTTRDVLKEHIHIDGMPLHIIDTAGLRD-------SSDEVERIGIERAWQ 297
Query: 307 ELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQ-KNINYKN 362
E++ +D ++++ D+ + +D K ++ P + + + NK D SG + YK
Sbjct: 298 EIEQADRVLFMLDSTDTQESDPYKIWPDFMQRLPDKMGLTVIRNKADLSGESIGKVEYK- 356
Query: 363 NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKI 422
LSAS + GI++L L + + + E ++AR RHI ++ A +L
Sbjct: 357 GYPVFQLSASHKQGIDVLAEHLKECMGFHSSNEGQ-FIARRRHIEAIERAEEHLLLG--- 412
Query: 423 INQSEKNFEKNL--ELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ E NL EL+AE+LR LS I G+ +++DLL IFS FCIGK
Sbjct: 413 ----KQQLEDNLAGELLAEELRLAQSYLSEITGEFSSDDLLGKIFSSFCIGK 460
>gi|359781147|ref|ZP_09284372.1| tRNA modification GTPase TrmE [Pseudomonas psychrotolerans L19]
gi|359371207|gb|EHK71773.1| tRNA modification GTPase TrmE [Pseudomonas psychrotolerans L19]
Length = 453
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 183/475 (38%), Positives = 271/475 (57%), Gaps = 25/475 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M + I IAT GRGGVGI+R+SG + +C + +L PR A Y +F +
Sbjct: 1 MSLPSDSIAAIATATGRGGVGIVRVSGPLAAPLARAICGR---ELPPRHAHYGNFLAADG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+++D G+ ++F P+S+TGEDV+EL GHGGP+IL +LL LE G RLA PGEF++
Sbjct: 58 SVLDAGIALFFPGPNSFTGEDVLELQGHGGPVILDLLLRRTLEEGA----RLARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI ASTE AA++A+ SL G+FS+ + L+++LI LR +E +
Sbjct: 114 RAFLNDKLDLAQAEAIADLIEASTEQAARNALRSLQGEFSRRVESLVEQLIRLRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + + + L ++ +L ++ ++ + AL+R+G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDFLADGR-VQGLLEGVQAELHQVQREANRGALLRDGMTVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT IAGTTRD + + I ++ + DTAG+ D + + VE+IG
Sbjct: 233 LNALAGREAAIVTDIAGTTRDVLREHIHLDGMPLHVVDTAGLRDTSDR-------VEQIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
++R + +D ++ V DA + D +++ P + + NK D +G
Sbjct: 286 VQRALDAIAGADRVLLVVDASAPEARDPQALWPELLSTRPPLGKLTVIRNKADLTGEATG 345
Query: 358 INYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLS 417
+ + I LSA+ GI LR L + QT E + AR RH+ +L A L
Sbjct: 346 LLATEPV-EISLSATDGAGIEALREHLKACMGFEQTTEGG-FSARRRHLDALQRAASALD 403
Query: 418 CAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AEDLR + L I G +++DLL IFS FCIGK
Sbjct: 404 H-----GHRQLTLAGSGELLAEDLRQAQQVLGEITGAFSSDDLLGRIFSSFCIGK 453
>gi|294138797|ref|YP_003554775.1| tRNA modification GTPase TrmE [Shewanella violacea DSS12]
gi|293325266|dbj|BAI99996.1| tRNA modification GTPase TrmE [Shewanella violacea DSS12]
Length = 453
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 185/468 (39%), Positives = 274/468 (58%), Gaps = 23/468 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ AT PGRGGVGIIR+SG E+ K R+A Y F + +ID+G+
Sbjct: 6 IVAQATAPGRGGVGIIRISGDQ---ASEVAMAMLGHIPKTRYADYCDFKTADGVVIDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFK P+S+TGEDV+EL GHGG I+L ML+ LE + +R+A PGEF+++AF+N+K
Sbjct: 63 ALYFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVLE---TKDIRIARPGEFSEQAFMNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A++E AAKSA+ SL G+FS ++ L++K+ NLR +E + DFP+E
Sbjct: 120 LDLTQAEAIADLIDATSEQAAKSALNSLQGEFSTEVHALVEKVTNLRLYVEAAIDFPDEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ L KI +L + K+ ++IR G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 VDF-LSDGKIAGSLNKIITRLDSVKASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGK 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT +AGTTRD + + I I+ I DTAG+ D + + VEKIGIER W E
Sbjct: 239 ESAIVTEVAGTTRDVLREHIHIDGMPLHIIDTAGLRDTS-------DTVEKIGIERAWAE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D ++++ D D + I P + + V NK D +G + +
Sbjct: 292 IETADQVLFMVDGTTTDAVDPHEIWPDFIDRLPSKLGITVVRNKADLTGESLELTQDHGH 351
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
+SA +GI+ ++ L L+ +E ++AR RH+ +L+ A+ +L ++
Sbjct: 352 PVYRISAKTGLGIDSVKQHLKSLMGYQSNLEGG-FIARRRHLEALDLASSHL-----MLG 405
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR LS I GK T++DLL IFS FCIGK
Sbjct: 406 KEQLEVYLAGELLAEELRMSQMALSEITGKFTSDDLLGKIFSSFCIGK 453
>gi|190171250|gb|ACE63695.1| ThdF [Escherichia vulneris]
Length = 439
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 186/458 (40%), Positives = 270/458 (58%), Gaps = 25/458 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATP GRGGVGI+R+SG + E V K K PR+A Y F + +D+G+ ++F
Sbjct: 3 ATPQGRGGVGILRISGLKAREVAEAVLGKLPK---PRYADYLPFKDADGTPLDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIAKPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNQVMNDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGIERAWQEIEQA 288
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D D + I P +P+ V NK D +G I+ N + I
Sbjct: 289 DRVLFMVDGTTTDAVDPAEIWPDFIARLPAKLPITVVRNKADVTGETLGISDVNGHSLIR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCA-IKIINQSE 427
LSA G+ LR+ L + ++E +LAR RH+ +L EA +L ++I
Sbjct: 349 LSARTGEGVEALRSHLKQSMGFDTSMEGG-FLARRRHLQALEEAARHLEQGKAQLIGAWA 407
Query: 428 KNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G------ELLAEELRLAQQNLSEITGEFTSDDLLGRIF 439
>gi|374260564|ref|ZP_09619161.1| tRNA modification GTPase TrmE [Legionella drancourtii LLAP12]
gi|363539145|gb|EHL32542.1| tRNA modification GTPase TrmE [Legionella drancourtii LLAP12]
Length = 412
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 183/431 (42%), Positives = 263/431 (61%), Gaps = 26/431 (6%)
Query: 43 KQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCL 102
K L PR AT+ SF+ ++++ID+GL++YFKAPHS+TGEDV+E+ HG P++L ML +C+
Sbjct: 7 KALSPRLATFCSFY--SDSLIDQGLMLYFKAPHSFTGEDVVEIQAHGSPVVLDMLTKACI 64
Query: 103 EIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKL 162
E+G RLA PGEF++RAFLN+K+DL Q EAI DLI AS+++AA+ A+ SL G+FS
Sbjct: 65 EVGA----RLARPGEFSERAFLNDKIDLTQAEAIADLIQASSQTAARMALKSLQGEFSNK 120
Query: 163 INILLDKLINLRTLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIR 222
IN L ++LI LR +E + DFPEE + LN L I +L I Q + L+R
Sbjct: 121 INQLNEQLIYLRLYVEAAIDFPEEEIDF-LNDGKVATLLKTILAELTAIRLQANQGVLLR 179
Query: 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI 282
GL++V+ G+PN GKS+L N+L G D+AIVT IAGTTRD + + I ++ I DTAG
Sbjct: 180 EGLSLVIAGRPNAGKSTLINNLAGRDIAIVTEIAGTTRDVMREHILLDDIPLHIIDTAG- 238
Query: 283 PDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTD-FDKKIIKNFPMNIP 341
++++ + VEK GI+R W ELK +D ++ V D +H K+I P ++P
Sbjct: 239 ------LRESDDVVEKEGIKRAWQELKKADCVLLVVDINDSEHHHLLTKEIRAALPTDVP 292
Query: 342 VIYVWNKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLA 401
+I V+NKID + +YLSA GIN L+ + D++ +LA
Sbjct: 293 IITVFNKIDTVAQAAQVQEH----AVYLSAKSGDGINGLKQVIKDVVGYQPN--EGQFLA 346
Query: 402 RERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLL 461
R RH+ +L+EA L + Q + + EL+AEDLR + L I G+ +++DLL
Sbjct: 347 RRRHLQALDEAKNLL-----VTGQQQLAVHRAGELLAEDLRLAQQVLCEITGEFSSDDLL 401
Query: 462 DNIFSQFCIGK 472
IFS FCIGK
Sbjct: 402 GRIFSSFCIGK 412
>gi|402840001|ref|ZP_10888474.1| tRNA modification GTPase TrmE [Klebsiella sp. OBRC7]
gi|402287316|gb|EJU35770.1| tRNA modification GTPase TrmE [Klebsiella sp. OBRC7]
Length = 436
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 182/456 (39%), Positives = 272/456 (59%), Gaps = 23/456 (5%)
Query: 20 VGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPHSYTG 79
+GI+R+SG + + V K K PR+A Y F + + +D+G+ ++F P+S+TG
Sbjct: 1 MGILRISGLKARDVAQAVLGKLPK---PRYADYLPFKDSDGSALDQGIALWFPGPNSFTG 57
Query: 80 EDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVEAIIDL 139
EDV+EL GHGGP+IL +LL L + G+R+A PGEF++RAFLN+KLDL Q EAI DL
Sbjct: 58 EDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSERAFLNDKLDLAQAEAIADL 114
Query: 140 INASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELILNKNDFFN 199
I+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E + L+
Sbjct: 115 IDASSEQAARSALNSLQGAFSTRVNHLVEALTHLRIYVEAAIDFPDEEIDF-LSDGKIEA 173
Query: 200 ELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTT 259
+L + L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AIVT IAGTT
Sbjct: 174 QLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTT 233
Query: 260 RDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQD 319
RD + + I I+ I DTAG+ D N +EVE+IGIER W E++ +D ++++ D
Sbjct: 234 RDVLREHIHIDGMPLHIIDTAGLRDAN-------DEVERIGIERAWQEIEQADRVLFMVD 286
Query: 320 ARYDKHT---DFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKRIG 376
T D I P N+P+ V NK D +G ++ N+ + + LSA G
Sbjct: 287 GTTTDATDPADIWSDFIARLPKNLPITVVRNKADLTGETLGLSEVNDHSLVRLSARTGEG 346
Query: 377 INLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLEL 436
+++LRN L + +E +LAR RH+ +L++A +L + + EL
Sbjct: 347 VDVLRNHLKQSMGFETNMEGG-FLARRRHLQALSDAAEHLQQGKAQLLGAWAG-----EL 400
Query: 437 IAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 401 LAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 436
>gi|387816232|ref|YP_005431727.1| tRNA modification GTPase [Marinobacter hydrocarbonoclasticus ATCC
49840]
gi|381341257|emb|CCG97304.1| GTPase involved in tRNA modification and in thiophene and furan
oxidation [Marinobacter hydrocarbonoclasticus ATCC
49840]
Length = 469
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 188/477 (39%), Positives = 274/477 (57%), Gaps = 26/477 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M I IAT PG+ GVGI+R+SG +I + + KPR+A Y F +
Sbjct: 14 MQPATDTIAAIATAPGQAGVGIVRVSGPRAMAIARTMLGF---EPKPRYAHYGPFRDRQG 70
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+ID+G+ +YF PHS+TGEDV EL GHGG +IL +LL S+G RLA PGEF++
Sbjct: 71 ELIDEGIGLYFPNPHSFTGEDVFELQGHGGTVILDILLREVC----SLGARLARPGEFSE 126
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI +S+E AA+ A+ S+ G FSK ++ L++ + +LR +E +
Sbjct: 127 RAFLNDKLDLAQAEAIADLIESSSEQAARCAVRSMQGVFSKRVDNLVEAITHLRIYVEAA 186
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + L ++L + +++ +I+ + ++ ++R+G+ VV+ G+PN GKSSL
Sbjct: 187 IDFPEEEIDF-LADGKVASDLQGLLEQVQQILGEAQQGTILRDGMKVVIAGRPNAGKSSL 245
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT+I GTTRD + + I I+ I DTAG+ D + +EVE+IG
Sbjct: 246 LNALAGREAAIVTAIEGTTRDVLREHIHIDGMPLHIIDTAGLRD-------SPDEVEQIG 298
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
I R W E++ +D I+ + DA T+ + I P + PV + NK+D SG
Sbjct: 299 IARAWEEIRQADRILLMVDATTTDKTEPHEIWPDFIDQLPRSAPVTVIRNKVDLSGEPVG 358
Query: 358 INYK--NNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYY 415
I+ + I L+A G+ +LR L + I T E +LAR RH+ +L A
Sbjct: 359 ISAEPHQTAPVIRLAAKAAEGLEVLREHLKECIGFASTTEGG-FLARRRHLDALERARDS 417
Query: 416 LSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L + Q++ EL+AEDLR + L I G T ++LL IFS FCIGK
Sbjct: 418 L-----LQGQTQLEGYGAGELLAEDLRAAQDALGEITGHLTPDELLGKIFSSFCIGK 469
>gi|190171182|gb|ACE63661.1| ThdF [Enterobacter amnigenus]
Length = 439
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 186/457 (40%), Positives = 266/457 (58%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SG + E V K K PR+A Y F + +D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRISGLKAREVAEAVLGKLPK---PRYADYLPFKDADGTALDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L + GLR+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGLRIAKPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNTVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGIERAWHEIEQA 288
Query: 312 DIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D D I P +P+ V NK D +G ++ N + I
Sbjct: 289 DRVLFMVDGTTTSAVDPADIWPDFIARLPAKLPITVVRNKADMTGETLGLSDVNGHSLIR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA GI LRN L + +E +LAR RH+ +L A +L + +
Sbjct: 349 LSARTGEGIEDLRNHLKQSMGFETNMEGG-FLARRRHLQALEAAANHLDQGKAQLLGAWA 407
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G-----ELLAEELRLAQQSLSEITGEFTSDDLLGRIF 439
>gi|225024775|ref|ZP_03713967.1| hypothetical protein EIKCOROL_01662 [Eikenella corrodens ATCC
23834]
gi|224942482|gb|EEG23691.1| hypothetical protein EIKCOROL_01662 [Eikenella corrodens ATCC
23834]
Length = 455
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 194/462 (41%), Positives = 272/462 (58%), Gaps = 28/462 (6%)
Query: 16 GRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPH 75
G+GGVG+IRLSGK L + + + Q PR A ++ F ID GL++YF AP
Sbjct: 17 GQGGVGVIRLSGKQLLPLAQQISGGKTPQ--PRRALHTDFVDAAGEAIDNGLLLYFPAPA 74
Query: 76 SYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVEA 135
S+TGEDVIELHGHGG ++L MLL C E+G + A PGEFTKRAFLN KLDL Q E+
Sbjct: 75 SFTGEDVIELHGHGGRVVLQMLLQRCFELGA----QPAEPGEFTKRAFLNGKLDLAQAES 130
Query: 136 IIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELILNKN 195
+ DLI+A+++SAA+ A+ SL G FS+ I+ L+D+LI LR L+E + DFPEE+ + L +
Sbjct: 131 VADLIDAASQSAARLAVRSLKGAFSQQIHELVDELITLRMLVEATLDFPEEDIDF-LAEA 189
Query: 196 DFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSI 255
L ++++L++++ Q ++ A++R G+NVVL+G PNVGKSSL N+L G DVAIVT I
Sbjct: 190 KVDERLAALQERLVRVLAQAEQGAILREGMNVVLVGAPNVGKSSLLNALAGEDVAIVTDI 249
Query: 256 AGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIII 315
AGTTRD + + I + I DTAG+ D + VE+IGIER+ ++ +D+ +
Sbjct: 250 AGTTRDTVREQITLEGIPVHIIDTAGLRD-------TTDPVEQIGIERSRQAVQQADVAL 302
Query: 316 YVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIAN-----IYLS 370
+ D + + KI+ P + I + NKID SG ++ + I LS
Sbjct: 303 ILIDPN-EGLNEATCKILAQLPPGLKRIEIRNKIDLSGEAAESCEQSGQPSGADTLIKLS 361
Query: 371 ASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEKNF 430
A G++LL+ LL I Q S +LAR RH+ +L A L A
Sbjct: 362 AKNGAGLDLLKQALLQQI-GWQGESESLFLARSRHLRALEAAQAELELAALC-------G 413
Query: 431 EKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
LEL AE LR ++I G+ +DLL IFS+FCIGK
Sbjct: 414 RHQLELFAEHLRLAQNACNTITGEFNADDLLGVIFSRFCIGK 455
>gi|451812599|ref|YP_007449053.1| tRNA modification GTPase [Candidatus Kinetoplastibacterium galatii
TCC219]
gi|451778501|gb|AGF49449.1| tRNA modification GTPase [Candidatus Kinetoplastibacterium galatii
TCC219]
Length = 449
Score = 332 bits (850), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 208/479 (43%), Positives = 302/479 (63%), Gaps = 38/479 (7%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
+ K+ PII IAT G GVG+IR+SGK L + ++ KK+LK R Y + +
Sbjct: 1 MLKDLPIIAIATAHGSAGVGVIRISGKEL---LPLMLNLFKKELKERIVHYLNLTDIDQE 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
IIDK +VI+FK+P S+TGEDV+E+ HGG ++ H ++ +C+ GK IGLRLA PGEFT+R
Sbjct: 58 IIDKAIVIFFKSPRSFTGEDVLEIQCHGGMVVQHQIIDTCILKGKDIGLRLANPGEFTRR 117
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN K+DLIQ EAI DLIN+S+ +AA+SA+ +LSG S +IN + ++INLR LIE +
Sbjct: 118 AFLNGKIDLIQAEAISDLINSSSIAAARSAIKTLSGSLSSIINDISSEIINLRVLIEANL 177
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFPEE+ L K + L IK KL+K++ + +++NG+N+VL GQPNVGKSSL
Sbjct: 178 DFPEEDISN-LQKKEIIISLESIKIKLIKLVSKVSDSLILKNGINIVLAGQPNVGKSSLL 236
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L ++AIVT +AGTTRDK++ I I L I DTAGI + N N +EK GI
Sbjct: 237 NALSEEEIAIVTPLAGTTRDKVSSAIYIKGILVNIIDTAGIRNSN-------NIIEKKGI 289
Query: 302 ERTWVELKNSDIIIYVQDA-RYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
E++W +KN+DI+++V D+ + D+ T+ I K P + +I ++NK D +KN NY
Sbjct: 290 EKSWEAIKNADIVLHVIDSNKRDEDTEL--YISKKIPEHTHIIKIYNKSDII-DKKNGNY 346
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQT-------IESSPYLARERHIHSLNEAN 413
+ I L +SK LDLI+K T + RERH +++ EA
Sbjct: 347 CDGI----LVSSK-------NGNGLDLIKKRNTKKITSSSSNEDSFSTRERHYYAIKEAL 395
Query: 414 YYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ A ++ +++NF L+++AE+LR H +L +I G+ T+ D+L+ IFS FCIGK
Sbjct: 396 EHIEVA---MSYTQENFL--LDILAEELRLSHIELCNITGQFTSEDMLEKIFSSFCIGK 449
>gi|90194112|gb|ABD92617.1| ThdF [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
Length = 434
Score = 331 bits (849), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 188/460 (40%), Positives = 282/460 (61%), Gaps = 35/460 (7%)
Query: 13 TPPGRGGVGIIRLSGKNLWSIVEIVCKKT-KKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
TP GRGGVGI+R+SG + + V K+ K+LKPR A Y F ++ ++D+G+ ++F
Sbjct: 1 TPIGRGGVGILRISG----PLAQEVAKEVLGKELKPRLANYLPFKDQDGTVLDQGIALFF 56
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
KAP+S+TGEDV+EL GHGG +IL +LL L I G+R+A GEF+++AFLN+KLDL
Sbjct: 57 KAPNSFTGEDVLELQGHGGQVILDILLKRILTIK---GIRIARAGEFSEQAFLNDKLDLA 113
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+A++E AA+SA+ SL G+FS IN L+D +I LRT +E + DFP+E + +
Sbjct: 114 QAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEEIDFL 173
Query: 192 LNK--NDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDV 249
+ N++I ++L + ++ K+ A++R G+ VV+ G+PN GKSSL N+L G +
Sbjct: 174 ADGKIEGHLNDII---RQLNGVRKEAKQGAILREGMKVVIAGRPNAGKSSLLNALAGREA 230
Query: 250 AIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELK 309
AIVT+IAGTTRD + + I I+ I DTAG +++ +EVEKIGI+R W E++
Sbjct: 231 AIVTNIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVEKIGIQRAWDEIE 283
Query: 310 NSDIIIYVQDARYDKHTDFDKK---IIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIAN 366
+D ++ + D+ F + + P NIPV + NK+D SG + + +
Sbjct: 284 QADHVLLMIDSTEQTAEAFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTL 343
Query: 367 IYLSASKRIGINLLRNTLLDLIEKTQTIESSP---YLARERHIHSLNEANYYLSCAIKII 423
I LSA ++G++LLR L +K+ +SS +LAR RH+ +L A +L +
Sbjct: 344 IRLSAQTKVGVDLLREHL----KKSMGYQSSTEGGFLARRRHLQALETAAEHLERGHIQL 399
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDN 463
Q EL+AE+LR LS I G+ T++DLL N
Sbjct: 400 TQFFAG-----ELLAEELRMVQNALSEITGQFTSDDLLGN 434
>gi|421523143|ref|ZP_15969774.1| tRNA modification GTPase TrmE [Pseudomonas putida LS46]
gi|402752964|gb|EJX13467.1| tRNA modification GTPase TrmE [Pseudomonas putida LS46]
Length = 456
Score = 331 bits (849), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 188/477 (39%), Positives = 274/477 (57%), Gaps = 26/477 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M T I IAT GRGGVGI+RLSG ++ +T L PR A Y F
Sbjct: 1 MNTVRETIAAIATAQGRGGVGIVRLSGPLAAKAGLLITGRT---LTPRHAHYGPFRDDEG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
++D+G+ ++F P+S+TGEDV+EL GHGGP++L MLL C+++G RLA PGEF++
Sbjct: 58 LVLDEGIALFFPGPNSFTGEDVLELQGHGGPVVLDMLLQRCVQVG----CRLARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G+FSK ++ L + LI LR +E +
Sbjct: 114 RAFLNDKLDLAQAEAIADLIEASSSQAARNALRSLQGEFSKRVHSLTEALIALRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + + + + + L ++ +L + ++ + AL+R+G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDFLADGH-VLSMLDAVRSELSTVQREAGQGALLRDGMTVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N L G + AIVT IAGTTRD + + I I+ + DTAG+ D + + VEKIG
Sbjct: 233 LNQLAGREAAIVTDIAGTTRDILREHIHIDGMPLHVVDTAGLRDTD-------DHVEKIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
+ER + +D ++ V D+ + +D + + P V + NK D SG +
Sbjct: 286 VERALKAIGEADRVLLVVDSTAPEASDPFALWPEFLAQRPDPAKVTLIRNKADLSGERVA 345
Query: 358 INY-KNNIANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYY 415
+ + I LSA G+ LLR+ L + QT ES + AR RH+ +L +A+ +
Sbjct: 346 LEQCDDGHVTITLSAKGDDTGLQLLRDHLKGCMGYEQTAESG-FSARRRHLDALRQASEH 404
Query: 416 LSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L +++ EL+AEDLR L I G +++DLL IFS FCIGK
Sbjct: 405 LEH-----GRAQLTLAGAGELLAEDLRQAQHALGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|90194128|gb|ABD92625.1| ThdF [Mannheimia glucosida]
Length = 428
Score = 331 bits (849), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 186/458 (40%), Positives = 278/458 (60%), Gaps = 43/458 (9%)
Query: 13 TPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFK 72
TP GRGGVGI+R+SG ++ + V KT L PR A Y F ++ ++D+G+ ++FK
Sbjct: 1 TPIGRGGVGILRVSGPLAETVAQAVLGKT---LPPRIANYLPFKDEDGTVLDQGIALFFK 57
Query: 73 APHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQ 132
AP+S+TGEDV+EL GHGG +IL +LL L++ GLR+A GEF+++AFLN+KLDL Q
Sbjct: 58 APNSFTGEDVLELQGHGGQVILDLLLKRILQVK---GLRIARAGEFSEQAFLNDKLDLAQ 114
Query: 133 VEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELIL 192
EAI DLI+A++E AA+SA+ SL G+FS IN L+D +I LRT +E + DFP+E + +
Sbjct: 115 AEAIADLIDATSEQAARSALKSLQGEFSNKINALVDSVIYLRTYVEAAIDFPDEEIDFLA 174
Query: 193 NKNDFFNELIKIKKKLLKIIQQ-------GKKRALIRNGLNVVLIGQPNVGKSSLFNSLV 245
+ KI+ KL +II Q K+ +++R G+ VV+ G+PN GKSSL N+L
Sbjct: 175 DG--------KIEAKLNEIIAQLDGVRREAKQGSILREGMKVVIAGRPNAGKSSLLNALA 226
Query: 246 GSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTW 305
G + AIVT+IAGTTRD + + I I+ I DTAG+ D + +EVE+IGI+R W
Sbjct: 227 GREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGIQRAW 279
Query: 306 VELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKN 362
E+ +D ++ + D+ + F + + + P N+PV + NK+D SG Q+ + +
Sbjct: 280 EEIAQADHVLLMIDSTEQQADQFRQEWAEFLAKLPANMPVTVIRNKVDLSGEQEGLIQVD 339
Query: 363 NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP---YLARERHIHSLNEANYYLSCA 419
+ I LSA ++G++LLR L +K+ +SS +LAR RH+ +L A +L
Sbjct: 340 DFTMIRLSAQTKVGVDLLREHL----KKSMGYQSSTEGGFLARRRHLQALETAAEHLERG 395
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTT 457
+ Q EL+AE+LR LS I G+ T+
Sbjct: 396 HIQLTQFLAG-----ELLAEELRMVQNALSEITGQFTS 428
>gi|119475232|ref|ZP_01615585.1| tRNA modification GTPase [marine gamma proteobacterium HTCC2143]
gi|119451435|gb|EAW32668.1| tRNA modification GTPase [marine gamma proteobacterium HTCC2143]
Length = 465
Score = 331 bits (848), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 198/483 (40%), Positives = 277/483 (57%), Gaps = 44/483 (9%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFF-------CKNN 60
I+ IAT PGRGGVGI+R+SG N +I ++ T QL PR+A+Y +F+ +++
Sbjct: 9 IVAIATAPGRGGVGIVRVSGPNSKAIASLI---TDSQLAPRYASYGAFYEANSTINTRSD 65
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+ID GL ++F P+S+TGEDV+EL HGGP+IL LLS +++G RLA PGEF++
Sbjct: 66 RVIDYGLTLFFPGPNSFTGEDVLELQAHGGPVILDYLLSEIIKLGA----RLARPGEFSE 121
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLNNK+DL Q EAI DLI++++ AA++A+ SL G+FSK I L+ ++NLR +E +
Sbjct: 122 RAFLNNKMDLTQAEAIADLIDSASLQAARNAVRSLQGQFSKKIMSLVSAVVNLRVYVEAA 181
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + L ++L I +L ++ + K+ +L++ G+ VV+ G+PN GKSSL
Sbjct: 182 IDFPEEEIDF-LADGKVSSDLDTILNQLNRVFSEAKQGSLVQEGMTVVIAGKPNAGKSSL 240
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI---PDINSKIKKNINEVE 297
N+L G D AIVT I GTTRD + + IQI+ I DTAG+ PDI +E
Sbjct: 241 LNALSGRDSAIVTEIEGTTRDVLREHIQIDGMPLHIIDTAGLRDSPDI----------IE 290
Query: 298 KIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIP--------VIYVWNKI 349
+ GI R W E+ +D I+ V D+ + D K+I + +I V V NK
Sbjct: 291 QEGIRRAWEEINRADRILLVVDSTTSREID-PVKLIGDLGPDISSKLSSLANVTIVHNKA 349
Query: 350 DYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSL 409
D SG I I LSA GI LLR L + E + AR RH+ +L
Sbjct: 350 DLSGQAVEIVEAEQTL-ITLSAKDDQGIELLRQHLKACMGYDGAGEGG-FTARRRHLDAL 407
Query: 410 NEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFC 469
A L Q ++ EL+AEDLR C LS I G+ +++DLL IFS FC
Sbjct: 408 TNAQEALHAG----QQQLLSYGAG-ELLAEDLRHCQNALSEITGEFSSDDLLGEIFSSFC 462
Query: 470 IGK 472
IGK
Sbjct: 463 IGK 465
>gi|221135459|ref|ZP_03561762.1| tRNA modification GTPase TrmE [Glaciecola sp. HTCC2999]
Length = 458
Score = 331 bits (848), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 193/479 (40%), Positives = 287/479 (59%), Gaps = 33/479 (6%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
L + I+ AT G+GGVGIIR+SG + +I + PR A Y +F +
Sbjct: 5 LEQQETIVAQATAIGKGGVGIIRVSGADATAIAIAILGHCPA---PRHAYYGNFHDNDGT 61
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ +YF P+S+TGEDV+EL GHGG II+ ML+ + L K +RLA PGEF++R
Sbjct: 62 VLDQGIALYFPNPNSFTGEDVLELQGHGGQIIMDMLIQAIL---KQPNVRLARPGEFSER 118
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+A+++ AA+SA+ SL G+FS+ I+ L++++I+LR +E +
Sbjct: 119 AFLNDKLDLAQAEAIADLIDATSQQAARSALRSLQGEFSQRIHTLVEEIIHLRMYVEAAI 178
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFPEE + L+ +L I + L + QQ K+ ++R G+ VV+ G+PN GKSSL
Sbjct: 179 DFPEEEIDF-LSDGKVQGDLQHIVETLALVQQQAKQGTILREGMQVVIAGRPNAGKSSLL 237
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI---PDINSKIKKNINEVEK 298
N+L G D AIVT IAGTTRD +++ I I+ I DTAG+ PD+ VE+
Sbjct: 238 NALSGRDAAIVTEIAGTTRDVLSEHIHIDGMPLHIIDTAGLRDSPDV----------VEQ 287
Query: 299 IGIERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQ 355
IGIER W + ++D ++++ D+ +D + + + P N+ V + NK D SG Q
Sbjct: 288 IGIERAWQAINDADRVLFMVDSTESDSSDPHQIWPEFMAKLPDNMGVTIIKNKADLSGQQ 347
Query: 356 KNINYKNN--IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEAN 413
I Y NN +SA+ +IGI L+ L D + T E ++AR RH+ ++ A
Sbjct: 348 --IGYDNNHGYPTFTISAANKIGIELVSAHLKDCMGFNTTSEGQ-FIARRRHVLAIETAA 404
Query: 414 YYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L +Q E++F EL+AE+LR L+ I G+ +++DLL IFS FCIGK
Sbjct: 405 NHLHTG---KSQLEEHFAG--ELLAEELRLAQLALNEITGEFSSDDLLGKIFSSFCIGK 458
>gi|190171244|gb|ACE63692.1| ThdF [Escherichia hermannii]
Length = 438
Score = 330 bits (847), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 183/457 (40%), Positives = 270/457 (59%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
AT PGRGGVGI+R+SG + + V K K PR+A Y F +N +D+G+ ++F
Sbjct: 2 ATHPGRGGVGILRISGLKARDVAQAVLGKLPK---PRYADYLPFRDVDNTALDQGIALWF 58
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L I G+R+A PGEF++RAFLN+KLDL
Sbjct: 59 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGVRIAKPGEFSERAFLNDKLDLA 115
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 116 QAEAIADLIDASSEQAARSALNSLQGAFSTRVNQLVEALTHLRIYVEAAIDFPDEEIDF- 174
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 175 LSDGKIEAQLNDVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 234
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E++ +
Sbjct: 235 VTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWQEIEQA 287
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D TD I P +P+ V NK D +G + ++ N + I
Sbjct: 288 DRVLFMVDGTTTDATDPAAIWPDFIARLPQKLPITVVRNKADITGEPQGLSEVNGHSLIR 347
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA G+++LR+ L + +E +LAR RH+ +L A +L + +
Sbjct: 348 LSARTGNGVDVLRDHLKHSMGFDTNMEGG-FLARRRHLQALETAAQHLEQGKAQLLGAWA 406
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 407 G-----ELLAEELRLAQQSLSEITGEFTSDDLLGRIF 438
>gi|292493916|ref|YP_003529355.1| tRNA modification GTPase TrmE [Nitrosococcus halophilus Nc4]
gi|291582511|gb|ADE16968.1| tRNA modification GTPase TrmE [Nitrosococcus halophilus Nc4]
Length = 458
Score = 330 bits (847), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 185/470 (39%), Positives = 278/470 (59%), Gaps = 32/470 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQL-----KPRFATYSSFFCKNNNI 62
I IATPPGRGG+G++R+SG +C++ K + PR+A +S F
Sbjct: 16 IAAIATPPGRGGIGVVRVSGP--------LCRQVAKHITGRLPPPRYAAFSRFRDGEGET 67
Query: 63 IDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRA 122
ID+GL +YF +PHS+TGEDV+EL GHGGP+++ LLS L++G +RLA PGEF++RA
Sbjct: 68 IDRGLALYFPSPHSFTGEDVLELQGHGGPVVMDWLLSCVLQLG----VRLARPGEFSERA 123
Query: 123 FLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFD 182
FLNNK+DL Q EAI DLI +++E AA+SA+ SL G+FS I L D+LI LR L+E D
Sbjct: 124 FLNNKIDLAQAEAIADLIESASEQAARSALRSLHGEFSAQIQDLRDQLIELRCLVEADID 183
Query: 183 FPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFN 242
F +E+ + I + L +++ L +I + ++ AL+R G+ VVL+G+PNVGKSSL N
Sbjct: 184 FSDEDIDFI-EQGAVAERLQELQSILRRIHRSARQGALLREGIRVVLVGRPNVGKSSLHN 242
Query: 243 SLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302
L G + AIVT + GTTRD + + I I+ +++DTAG+ D +++ +E+ G+
Sbjct: 243 RLAGFEAAIVTDVPGTTRDLLREHITIDGLPIRLSDTAGLHD-------SMDIIEQEGMR 295
Query: 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKN 362
RT E N+D ++ + D + T+ ++ I+ P N+ + NKID SG +
Sbjct: 296 RTREEFTNADHVLLIADDQVGL-TELEQSILGELPDNVSHTLILNKIDLSGASAERREDS 354
Query: 363 NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKI 422
+ LS G++LL L + E +LAR RH+ +L A ++ A +I
Sbjct: 355 QRVVLRLSVLTGAGMDLLLQRLKECAGFDGEGEGY-FLARRRHLEALQRAGAAVAAAGEI 413
Query: 423 INQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + E E++AE+LR L+ I G+ ++DLL IFS FCIGK
Sbjct: 414 LKE-----EGPEEMLAEELRQAQNALAEITGEYRSDDLLGEIFSTFCIGK 458
>gi|190171246|gb|ACE63693.1| ThdF [Escherichia hermannii]
Length = 438
Score = 330 bits (847), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 183/457 (40%), Positives = 270/457 (59%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
AT PGRGGVGI+R+SG + + V K K PR+A Y F +N +D+G+ ++F
Sbjct: 2 ATHPGRGGVGILRISGLKARDVAQAVLGKLPK---PRYADYLPFRDVDNTALDQGIALWF 58
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L I G+R+A PGEF++RAFLN+KLDL
Sbjct: 59 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGVRIAKPGEFSERAFLNDKLDLA 115
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 116 QAEAIADLIDASSEQAARSALNSLQGAFSTRVNQLVEALTHLRIYVEAAIDFPDEEIDF- 174
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 175 LSDGKIEAQLNDVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 234
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E++ +
Sbjct: 235 VTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWQEIEQA 287
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D TD I P +P+ V NK D +G + ++ N + I
Sbjct: 288 DRVLFMVDGTTTDATDPAAIWPDFIARLPQKLPITVVRNKADITGEPQGLSEVNGHSLIR 347
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA G+++LR+ L + +E +LAR RH+ +L A +L + +
Sbjct: 348 LSARTGNGVDVLRDHLKHSMGFDTNMEGG-FLARRRHLQALENAAQHLEQGKAQLLGAWA 406
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 407 G-----ELLAEELRLAQQSLSEITGEFTSDDLLGRIF 438
>gi|26986750|ref|NP_742175.1| tRNA modification GTPase TrmE [Pseudomonas putida KT2440]
gi|148550508|ref|YP_001270610.1| tRNA modification GTPase TrmE [Pseudomonas putida F1]
gi|386009708|ref|YP_005927985.1| protein MnmE [Pseudomonas putida BIRD-1]
gi|397693636|ref|YP_006531516.1| tRNA modification GTPase mnmE [Pseudomonas putida DOT-T1E]
gi|60415983|sp|P0A175.1|MNME_PSEPK RecName: Full=tRNA modification GTPase MnmE
gi|60415984|sp|P0A176.1|MNME_PSEPU RecName: Full=tRNA modification GTPase MnmE
gi|166234811|sp|A5WBB6.1|MNME_PSEP1 RecName: Full=tRNA modification GTPase MnmE
gi|24981340|gb|AAN65639.1|AE016190_5 tRNA modification GTPase [Pseudomonas putida KT2440]
gi|45710|emb|CAA44418.1| unnamed protein product [Pseudomonas putida]
gi|148514566|gb|ABQ81426.1| tRNA modification GTPase trmE [Pseudomonas putida F1]
gi|313496414|gb|ADR57780.1| MnmE [Pseudomonas putida BIRD-1]
gi|397330366|gb|AFO46725.1| tRNA modification GTPase mnmE [Pseudomonas putida DOT-T1E]
Length = 456
Score = 330 bits (847), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 187/477 (39%), Positives = 274/477 (57%), Gaps = 26/477 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M T I IAT GRGGVGI+RLSG ++ +T L PR A Y F
Sbjct: 1 MNTVRETIAAIATAQGRGGVGIVRLSGPLAAKAGLLITGRT---LTPRHAHYGPFRDDEG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
++D+G+ ++F P+S+TGEDV+EL GHGGP++L MLL C+++G RLA PGEF++
Sbjct: 58 LVLDEGIALFFPGPNSFTGEDVLELQGHGGPVVLDMLLQRCVQVG----CRLARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G+FS+ ++ L + LI LR +E +
Sbjct: 114 RAFLNDKLDLAQAEAIADLIEASSSQAARNALRSLQGEFSRRVHSLTEALIALRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + + + + + L ++ +L + ++ + AL+R+G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDFLADGH-VLSMLDAVRSELSTVQREAGQGALLRDGMTVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N L G + AIVT IAGTTRD + + I I+ + DTAG+ D + + VEKIG
Sbjct: 233 LNQLAGREAAIVTDIAGTTRDILREHIHIDGMPLHVVDTAGLRDTD-------DHVEKIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
+ER + +D ++ V D+ + +D + + P V + NK D SG +
Sbjct: 286 VERALKAIGEADRVLLVVDSTAPEASDPFALWPEFLAQRPDPAKVTLIRNKADLSGERVA 345
Query: 358 INY-KNNIANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYY 415
+ + I LSA G+ LLR+ L + QT ES + AR RH+ +L +A+ +
Sbjct: 346 LEQCDDGHVTITLSAKGDDTGLQLLRDHLKGCMGYEQTAESG-FSARRRHLDALRQASEH 404
Query: 416 LSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L +++ EL+AEDLR L I G +++DLL IFS FCIGK
Sbjct: 405 LEH-----GRAQLTLAGAGELLAEDLRQAQHALGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|395446361|ref|YP_006386614.1| tRNA modification GTPase TrmE [Pseudomonas putida ND6]
gi|388560358|gb|AFK69499.1| tRNA modification GTPase TrmE [Pseudomonas putida ND6]
Length = 456
Score = 330 bits (847), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 187/477 (39%), Positives = 274/477 (57%), Gaps = 26/477 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M T I IAT GRGGVGI+RLSG ++ +T L PR A Y F
Sbjct: 1 MNTVRETIAAIATAQGRGGVGIVRLSGPLAAKAGLLITGRT---LTPRHAHYGPFRDDEG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
++D+G+ ++F P+S+TGEDV+EL GHGGP++L MLL C+++G RLA PGEF++
Sbjct: 58 LVLDEGIALFFPGPNSFTGEDVLELQGHGGPVVLDMLLQRCVQVG----CRLARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G+FS+ ++ L + LI LR +E +
Sbjct: 114 RAFLNDKLDLAQAEAIADLIEASSSQAARNALRSLQGEFSRRVHSLTEALIALRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + + + + + L ++ +L + ++ + AL+R+G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDFLADGH-VLSMLDAVRSELSTVQREAGQGALLRDGMTVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N L G + AIVT IAGTTRD + + I I+ + DTAG+ D + + VEKIG
Sbjct: 233 LNQLAGREAAIVTDIAGTTRDILREHIHIDGMPLHVVDTAGLRDTD-------DHVEKIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
+ER + +D ++ V D+ + +D + + P V + NK D SG +
Sbjct: 286 VERALKAIGEADRVLLVVDSTAPEASDPFALWPEFLAQRPDPAKVTLIRNKADLSGERVA 345
Query: 358 INY-KNNIANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYY 415
+ + I LSA G+ LLR+ L + QT ES + AR RH+ +L +A+ +
Sbjct: 346 LEQCDDGHVTITLSAKGDATGLQLLRDHLKGCMGYEQTAESG-FSARRRHLDALRQASEH 404
Query: 416 LSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L +++ EL+AEDLR L I G +++DLL IFS FCIGK
Sbjct: 405 LEH-----GRAQLTLAGAGELLAEDLRQAQHALGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|378981441|ref|YP_005229582.1| tRNA modification GTPase [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|402783256|ref|YP_006638802.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Klebsiella
pneumoniae subsp. pneumoniae 1084]
gi|421918884|ref|ZP_16348396.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
gi|364520852|gb|AEW63980.1| tRNA modification GTPase [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|402544089|gb|AFQ68238.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Klebsiella
pneumoniae subsp. pneumoniae 1084]
gi|410118837|emb|CCM91021.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
Length = 436
Score = 330 bits (846), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 184/456 (40%), Positives = 268/456 (58%), Gaps = 23/456 (5%)
Query: 20 VGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPHSYTG 79
+GI+R+SG + + V K K PR+A Y F + +D+G+ ++F P+S+TG
Sbjct: 1 MGILRISGLKARDVAQAVLGKLPK---PRYADYLPFNDVDGTPLDQGIALWFPGPNSFTG 57
Query: 80 EDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVEAIIDL 139
EDV+EL GHGGP+IL +LL L + GLR+A PGEF++RAFLN+KLDL Q EAI DL
Sbjct: 58 EDVLELQGHGGPVILDLLLKRILTL---PGLRIARPGEFSERAFLNDKLDLAQAEAIADL 114
Query: 140 INASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELILNKNDFFN 199
I+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E + L+
Sbjct: 115 IDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEIDF-LSDGKIEA 173
Query: 200 ELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTT 259
+L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AIVT IAGTT
Sbjct: 174 QLNEVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTT 233
Query: 260 RDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQD 319
RD + + I I+ I DTAG+ D N +EVE+IGIER W E+ +D ++++ D
Sbjct: 234 RDVLREHIHIDGMPLHIIDTAGLRDAN-------DEVERIGIERAWQEIAQADRVLFMVD 286
Query: 320 ARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKRIG 376
D + I+ P +P+ V NK D +G I+ N + I LSA G
Sbjct: 287 GTTTGAVDPAEIWPDFIERLPAKLPITVVRNKADVTGEALGISEVNGHSLIRLSARTGEG 346
Query: 377 INLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLEL 436
+ +LRN L + +E +LAR RH+ +L EA +L + + EL
Sbjct: 347 VEVLRNHLKQSMGFDTNMEGG-FLARRRHLQALEEAANHLQQGKAQLLGAWAG-----EL 400
Query: 437 IAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+AE+LR + LS I G+ T++DLL IFS FCIGK
Sbjct: 401 LAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 436
>gi|110835613|ref|YP_694472.1| tRNA modification GTPase [Alcanivorax borkumensis SK2]
gi|123345176|sp|Q0VKU8.1|MNME_ALCBS RecName: Full=tRNA modification GTPase MnmE
gi|110648724|emb|CAL18200.1| tRNA modification GTPase [Alcanivorax borkumensis SK2]
Length = 456
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 194/482 (40%), Positives = 288/482 (59%), Gaps = 36/482 (7%)
Query: 1 MLTKNSP--IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCK 58
MLT +SP I+ IAT PGRGGVG++RLSG SI + + + L PR A + F +
Sbjct: 1 MLT-SSPDTIVAIATAPGRGGVGVVRLSGPQALSIASSIVGE--RLLSPRLAHFCRFRNQ 57
Query: 59 NNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEF 118
+ +++D+GLVI F APHS+TGEDV+EL GHGGP+IL ML+++C+E G R A GEF
Sbjct: 58 DGDVLDEGLVISFPAPHSFTGEDVVELQGHGGPVILDMLVATCIEAGA----RQARAGEF 113
Query: 119 TKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIE 178
++RAFLN+K+DL Q EAI DLI+A T ++A++A+ SL G FS +N L++ LI LR +E
Sbjct: 114 SQRAFLNDKMDLTQAEAIADLIDAGTAASARAALHSLQGVFSAEVNQLVEALIGLRIYVE 173
Query: 179 FSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKS 238
+ DFPEE + L+ ++L ++K+ L+++ + + L+R G+ +V+ G+PN GKS
Sbjct: 174 AAIDFPEEEIDF-LSDGKVASDLRAVRKQCLRVLGEANQGRLVREGMTLVIAGKPNAGKS 232
Query: 239 SLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEK 298
SL N+L G D AIVT IAGTTRD + ++IQ++ + DTAG+ D + + VE+
Sbjct: 233 SLMNALAGFDAAIVTDIAGTTRDVLRESIQLDGMPLNLIDTAGLRD-------SADVVEQ 285
Query: 299 IGIERTWVELKNSDIIIYVQDAR---YDKHTDFD-----KKIIKNFPMNIPVIYVWNKID 350
GI R + E++ +D ++ + D+R D H D ++ ++N +++PV V NK D
Sbjct: 286 EGIRRAYAEMRKADRLLVMVDSRDPLDDIHNLHDLLPQSQQQLEN--LDLPVTVVLNKAD 343
Query: 351 YSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLN 410
SG +SA+ G++ LR L + Q S + AR RHI +L
Sbjct: 344 LSGLSTGPRADG---AFVISAANGEGLDALRGHLKQ-VAGYQGEGQSRFSARRRHITALE 399
Query: 411 EANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCI 470
+A L + + + + EL+AEDLR + L I G T +DLL IFS FCI
Sbjct: 400 KALMALES-----GEQQLHGQAAGELLAEDLRAAQKALEEITGVFTADDLLGRIFSSFCI 454
Query: 471 GK 472
GK
Sbjct: 455 GK 456
>gi|170724368|ref|YP_001752056.1| tRNA modification GTPase TrmE [Pseudomonas putida W619]
gi|205415795|sp|B1JFV3.1|MNME_PSEPW RecName: Full=tRNA modification GTPase MnmE
gi|169762371|gb|ACA75687.1| tRNA modification GTPase TrmE [Pseudomonas putida W619]
Length = 456
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 189/477 (39%), Positives = 275/477 (57%), Gaps = 26/477 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M T I IAT GRGGVGI+RLSG +++ +T L PR A Y F +
Sbjct: 1 MNTVRETIAAIATAQGRGGVGIVRLSGPLAAKAGQLITGRT---LTPRHAHYGPFRDQEG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
++D+G+ ++F P+S+TGEDV+EL GHGGP++L MLL C+++G RLA PGEF++
Sbjct: 58 LVLDEGIALFFPGPNSFTGEDVLELQGHGGPVVLDMLLQRCVQVG----CRLARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI AS+ AA++A+ SL G+FSK ++ L + LI LR +E +
Sbjct: 114 RAFLNDKLDLAQAEAIADLIEASSSQAARNALRSLQGEFSKRVHSLTEALIALRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + + + + + L ++ +L + ++ + AL+R+G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDFLADGH-VLSMLDSVRAELSTVQREAGQGALLRDGMTVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N L G + AIVT+IAGTTRD + + I I+ + DTAG+ D + + VEKIG
Sbjct: 233 LNQLAGREAAIVTAIAGTTRDILREHIHIDGMPLHVVDTAGLRDTD-------DHVEKIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
+ER + +D ++ V D+ + +D + + P V + NK D SG
Sbjct: 286 VERALKAIGEADRVLLVVDSTAPEASDPFALWPEFLDQRPDPGKVTLIRNKADLSGEPVG 345
Query: 358 INY-KNNIANIYLSA-SKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYY 415
+ + I LSA G+ LLR+ L + QT ES + AR RH+ +L +A
Sbjct: 346 LEQCDDGHVTITLSAKGDDQGLLLLRDHLKACMGYEQTAESG-FSARRRHLDALRQA--- 401
Query: 416 LSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
CA +++ EL+AEDLR L I G +++DLL IFS FCIGK
Sbjct: 402 --CAHLEHGRAQLTLAGAGELLAEDLRQAQHALGEITGAFSSDDLLGRIFSSFCIGK 456
>gi|190171180|gb|ACE63660.1| ThdF [Enterobacter aerogenes]
Length = 439
Score = 330 bits (845), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 183/457 (40%), Positives = 269/457 (58%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SG + + V K K PR+A Y F + +D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRISGLKARDVAQAVLGKLPK---PRYADYLPFKDADGTPLDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIANPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG+ D + +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS-------DEVERIGIERAWQEIEQA 288
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D D + I+ P +P+ V NK D +G ++ N + I
Sbjct: 289 DRVLFMVDGTTTSAVDPAEIWPDFIERLPAKLPITVVRNKADVTGEALGLSEVNGHSLIR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA G+ +LRN L + +E +LAR RH+ +L A +L + +
Sbjct: 349 LSARTGEGVEVLRNHLKQSMGFDTNMEGG-FLARRRHLQALETAADHLQQGKAQLLGAWA 407
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G-----ELLAEELRLSQQALSEITGEFTSDDLLGRIF 439
>gi|374622877|ref|ZP_09695397.1| tRNA modification GTPase TrmE [Ectothiorhodospira sp. PHS-1]
gi|373941998|gb|EHQ52543.1| tRNA modification GTPase TrmE [Ectothiorhodospira sp. PHS-1]
Length = 446
Score = 330 bits (845), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 174/466 (37%), Positives = 268/466 (57%), Gaps = 28/466 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT PGRGGVGI+R+SG + E+ + + PR A Y F +ID G+
Sbjct: 8 IAAIATAPGRGGVGIVRVSGPH---AAEVARRCLGRLPSPRQALYGPFLDARGEVIDDGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF PHSYTGEDV+EL GHGGP+++ +LL +CLE+G R+A GEFT+RAFLN++
Sbjct: 65 ALYFPGPHSYTGEDVLELQGHGGPVVMDLLLGACLEMG----CRMARAGEFTERAFLNDR 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EA+ DLI+A + +A +SA SL G FS+ ++++L L LR +E DF EE
Sbjct: 121 MDLAQAEAVADLIDAGSAAAVRSARRSLEGGFSRQVDLILSALTELRVFVEADLDFSEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+L L + D + + +L + +Q ++ L+R G ++V+ G+PN GKSSL N LV
Sbjct: 181 LDL-LAEGDIQYRIESLLDQLATLTEQARQGNLLREGAHLVIAGRPNAGKSSLLNRLVDR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT+I GTTRD + + + ++ + DTAG ++++ + VE+ GI R W E
Sbjct: 240 EAAIVTAIPGTTRDVLREHLSLDGLPLHLVDTAG-------LRESDDPVEQEGIRRAWAE 292
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANI 367
++ +D+++ V DA + + I + P +PVI V+NK+D + + +++
Sbjct: 293 IERADLVLLVVDA-TQGEGEAEGGIRRRLPSRLPVITVYNKLD-----RLTEVPADASDV 346
Query: 368 -YLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQS 426
++SA GI+ LR L + + E + AR RH+ +L ++ A
Sbjct: 347 LFISARTGEGISTLREALKAQLHYSGHPEGL-FTARRRHLDALARTRDHVQAA-----ND 400
Query: 427 EKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AE+LR E L I G+ + +DLL IFS FCIGK
Sbjct: 401 QLIITRATELVAEELRLAQEALGEITGRVSADDLLGEIFSSFCIGK 446
>gi|149375642|ref|ZP_01893411.1| tRNA modification GTPase TrmE [Marinobacter algicola DG893]
gi|149360044|gb|EDM48499.1| tRNA modification GTPase TrmE [Marinobacter algicola DG893]
Length = 456
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 186/479 (38%), Positives = 270/479 (56%), Gaps = 30/479 (6%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M I IAT PG+ GVGI+R+SG + +I + + +PR+A Y F
Sbjct: 1 MFNATDTIAAIATAPGQSGVGIVRVSGPHATAIAR---QMLGFEPRPRYAHYGPFLDTQG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+ID+G+ +YF PHS+TGEDV EL GHGG +IL +LL + E+G RLA PGEF++
Sbjct: 58 ELIDEGIGLYFPNPHSFTGEDVFELQGHGGTVILDLLLRTVCELGA----RLARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EAI DLI +S+E AA+ A+ SL G FS+ I+ L++ + +LR +E +
Sbjct: 114 RAFLNDKLDLTQAEAIADLIESSSEQAARCAVRSLQGVFSRRIDALVEAVTHLRIYVEAA 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + L N+L I + L I+ + ++ ++R+G+ VV+ G+PN GKSSL
Sbjct: 174 IDFPEEEIDF-LADGKVANDLQVIIQDLDIILAEAQQGTILRDGMKVVIAGRPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVT++ GTTRD + + I I+ I DTAG+ D + +EVE+IG
Sbjct: 233 LNALAGREAAIVTAVEGTTRDVLREHIHIDGMPLHIIDTAGLRD-------SPDEVEQIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKN 357
I R W E++ +D I+ + DA T+ + I P P+ + NK+D +G
Sbjct: 286 IARAWDEIRQADRILLMVDATTTPETEPHQLWPDFIDQLPSGAPLTVIRNKVDLTGEPAG 345
Query: 358 INYKNNIAN--IYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYY 415
+ A + ++A G+ +LR+ L + T E ++AR RH+ +L A
Sbjct: 346 FEELDASAAPVVRIAAKSADGLEVLRDHLKQCMGFASTTEGG-FIARRRHLDALERARVS 404
Query: 416 LSCAIKIINQSEKNFE--KNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L Q E + EL+AEDLR + L I G T +DLL IFS FCIGK
Sbjct: 405 LL-------QGEDQLQGYGAGELLAEDLRAAQDSLGEITGAMTPDDLLGKIFSSFCIGK 456
>gi|416084713|ref|ZP_11587078.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|348010326|gb|EGY50381.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
Length = 430
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 185/451 (41%), Positives = 266/451 (58%), Gaps = 24/451 (5%)
Query: 25 LSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPHSYTGEDVIE 84
+SG + ++V K K PR A Y F + ++D+G+ +YFK P+S+TGEDV+E
Sbjct: 1 MSGPKAIEVAQVVLGKCPK---PRMADYLPFKEADGTVLDQGIALYFKGPNSFTGEDVLE 57
Query: 85 LHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVEAIIDLINAST 144
L GHGG ++L +LL L I G+RLA PGEF+++AFLN+KLDL Q EAI DLI+AS+
Sbjct: 58 LQGHGGQVVLDLLLKRILRIE---GIRLARPGEFSEQAFLNDKLDLAQAEAIADLIDASS 114
Query: 145 ESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELILNKNDFFNELIKI 204
E AA+SA+ SL G+FS +N L+D +I LRT +E + DFP+E + L L I
Sbjct: 115 EQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEEIDF-LADGKIEGHLNDI 173
Query: 205 KKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKIT 264
+L K+ + K+ +++R G+ VV+ G+PN GKSSL N+L G + AIVT IAGTTRD +
Sbjct: 174 IAQLDKVRAEAKQGSILREGMKVVIAGRPNAGKSSLLNTLAGREAAIVTDIAGTTRDVLR 233
Query: 265 KTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDK 324
+ I ++ I DTAG+ D +EVE+IGI R W E+ +D I+ + D+ D
Sbjct: 234 EHIHLDGMPLHIIDTAGLRDAT-------DEVERIGISRAWHEIDQADRILLMLDSS-DT 285
Query: 325 HTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKRIGINLLR 381
D K + + P NIP+ + NK D SG + + ++ + LSA + G++LLR
Sbjct: 286 EQDLAKVRSEFLAKLPNNIPLTIIRNKADLSGEAERLYEEDGYTVVNLSAKTQQGVDLLR 345
Query: 382 NTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDL 441
+ L + QT +LAR RH+ +L A +L + Q EL+AE+L
Sbjct: 346 DHLKQAM-GYQTGMEGGFLARRRHLEALELAARHLQMGHVQLTQFHAG-----ELLAEEL 399
Query: 442 RFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
R LS I G+ T++DLL NIFS FCIGK
Sbjct: 400 RMVQSALSEITGQFTSDDLLTNIFSSFCIGK 430
>gi|190171290|gb|ACE63715.1| ThdF [Cronobacter muytjensii]
Length = 439
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 180/457 (39%), Positives = 271/457 (59%), Gaps = 23/457 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
AT PGRGGVGI+R+SG+ + + V K K R+A Y F + +D+G+ ++F
Sbjct: 3 ATHPGRGGVGILRVSGQQARDVAQAVLGKLPKA---RYADYLPFKDADGTALDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L + G+R+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTL---PGVRIARPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L ++ L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWQEIEQA 288
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D TD + I P +P+ V NK D +G I+ N + +
Sbjct: 289 DRVLFMVDGTTTDATDPAQIWPDFIARLPATLPITVVRNKADVTGELPGISEVNGHSLVR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA G+++LR+ L + ++E +LAR RH+ +L A +L + +
Sbjct: 349 LSARTSDGVDVLRSHLKQSMGFDTSMEGG-FLARRRHLQALETAANHLQQGKAQLLGAWA 407
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 408 G-----ELLAEELRLAQQALSEITGEFTSDDLLGRIF 439
>gi|254225543|ref|ZP_04919152.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae V51]
gi|125621863|gb|EAZ50188.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae V51]
Length = 449
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 182/454 (40%), Positives = 270/454 (59%), Gaps = 23/454 (5%)
Query: 22 IIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPHSYTGED 81
IIR+SG + + V +T L+PR+A Y F ++ +D+G+ ++F PHS+TGED
Sbjct: 16 IIRVSGPLAAHVAQTVTGRT---LRPRYAEYLPFTDEDGQQLDQGIALFFPNPHSFTGED 72
Query: 82 VIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVEAIIDLIN 141
V+EL GHGGP+++ ML+ L+I G+R A PGEF++RAFLN+K+DL Q EAI DLI+
Sbjct: 73 VLELQGHGGPVVMDMLIRRILQIK---GVRPARPGEFSERAFLNDKMDLTQAEAIADLID 129
Query: 142 ASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELILNKNDFFNEL 201
AS+E AAKSA+ SL G+FSK I+ L++ LI+LR +E + DFPEE + L +L
Sbjct: 130 ASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEEIDF-LADGKVSADL 188
Query: 202 IKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRD 261
I L + ++ + A++R G+ VV+ G+PN GKSSL N+L G + AIVT IAGTTRD
Sbjct: 189 QTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRD 248
Query: 262 KITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDAR 321
+ + I I+ I DTAG+ D + + VEKIGIER W E++ +D ++++ D
Sbjct: 249 VLREHIHIDGMPLHIIDTAGLRDAS-------DTVEKIGIERAWEEIRQADRVLFMVDGT 301
Query: 322 YDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKRIGIN 378
+ TD + P NI + + NK D +G I + N I LSA G++
Sbjct: 302 TTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAKTGQGVD 361
Query: 379 LLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIA 438
LR L + + + E ++AR RH+ +L A +L+ I Q + E++A
Sbjct: 362 ALRQHLKECMGFSGNQEGG-FMARRRHLDALERAAEHLA-----IGQQQLEGYMAGEILA 415
Query: 439 EDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
E+LR + L+ I G+ +++DLL IFS FCIGK
Sbjct: 416 EELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 449
>gi|88705405|ref|ZP_01103116.1| tRNA modification GTPase trmE [Congregibacter litoralis KT71]
gi|88700495|gb|EAQ97603.1| tRNA modification GTPase trmE [Congregibacter litoralis KT71]
Length = 457
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 195/480 (40%), Positives = 273/480 (56%), Gaps = 34/480 (7%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M+ + I+ IAT G GGVGIIRLSG + ++I K T K R A + S N
Sbjct: 4 MVGDSDTIVAIATGSGAGGVGIIRLSGPDAFTIAR---KMTATDAKARQAHFVSIVDGQN 60
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
++D+GL++ F PHS+TGEDV ELH HGGP++L +L C+ G R A PGEF++
Sbjct: 61 AVLDQGLLLQFPGPHSFTGEDVAELHCHGGPVLLRTVLRECIYHGA----RQATPGEFSQ 116
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLNNK+DL+Q EAI DLI++STE+AA+SA SL+G FS ++ LL++LI LR IE +
Sbjct: 117 RAFLNNKIDLVQAEAIADLISSSTEAAARSASRSLTGSFSVQVDALLEQLIRLRVFIEAA 176
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + I ++D L + + +++ ++ +R+GL +V+ G PN GKSSL
Sbjct: 177 IDFPEEEIDFI-AESDVLERLETLASSINALLKSARRGRTLRDGLKLVIAGAPNAGKSSL 235
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N L D AIVT I GTTRD + + IQI+ I DTAG+ D + +E+ G
Sbjct: 236 LNQLAEQDSAIVTDIPGTTRDLLREHIQIDGLPLHIVDTAGLRDSG-------DAIEQEG 288
Query: 301 IERTWVELKNSDIIIYVQD-----ARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355
I R E++++D I+ V D A D T + P +P+ + NK D
Sbjct: 289 IRRARSEMQSADHILLVVDNSGESALLDAAT-LVSHYEGDLPEAVPITLIRNKCDI---- 343
Query: 356 KNINY---KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEA 412
+NI +I I LSA + GI+LLR LL T ESS + ARERH+ +L E
Sbjct: 344 QNIPATFTTGDINEICLSALRGDGIDLLRRHLLTTAGIADT-ESSDFSARERHVLALEEC 402
Query: 413 NYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ + + ELIAEDLR+ + L SI G ++++LL IF FCIGK
Sbjct: 403 AGHLAQGLLQLKD-----HGAAELIAEDLRYAQDSLGSITGSFSSDELLGEIFGSFCIGK 457
>gi|118594209|ref|ZP_01551556.1| tRNA modification GTPase [Methylophilales bacterium HTCC2181]
gi|118439987|gb|EAV46614.1| tRNA modification GTPase [Methylophilales bacterium HTCC2181]
Length = 450
Score = 328 bits (842), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 196/474 (41%), Positives = 286/474 (60%), Gaps = 26/474 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
ML + I I+T G GG+GI+RLSG +I + +C Q+ PR A + +F+ +
Sbjct: 1 MLRAANTIAAISTAGGVGGIGIVRLSGPEALAIAKTICSG---QIVPREAGFHNFYNADQ 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
I+D+G++++F P S+TGEDVIE GHGG +L+ +L+ C++ G RLA PGEFT+
Sbjct: 58 EIVDQGVILFFPNPKSFTGEDVIEFQGHGGQTVLNAVLNLCIDKGA----RLAEPGEFTR 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RA+LNNK+DL Q E++ID+INA+T A KSA SLSGKFS IN LL KLI LR +E
Sbjct: 114 RAYLNNKMDLAQAESVIDVINATTIEAVKSAAQSLSGKFSIKINGLLKKLIELRVFVEAC 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + I + + + L I ++ +I+ + L++ G NVVLIGQPNVGKSSL
Sbjct: 174 LDFPEEEIDFI-EQGNVIDRLNNIAAEVDQILLVARHGQLLKEGANVVLIGQPNVGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N LVG + AIVT + GTTRD I I I+ + DTAG ++ ++VE +G
Sbjct: 233 LNQLVGEEKAIVTDVPGTTRDPIASNISIHGIPLNVFDTAG-------LRTTDDQVELLG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
I +TW +K S I + + DA +++K II P NI +++++NKID + +
Sbjct: 286 ISKTWESIKGSHIAMVLVDATKGA-GNYEKDIISRLPKNIEILWIYNKIDLTDDKPKAVE 344
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIES--SPYLARERHIHSLNEANYYLSC 418
N +IY+SA +GI+LLR L +++ + + Y+AR RHI +LN +
Sbjct: 345 HNQNKSIYISAKLDLGIDLLREALYEILTGGSAYNNNETVYIARSRHIDALNAVKASI-- 402
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
I+ + K+ + EL+AE+L LSSI G+ +++DLL IFS+FCIGK
Sbjct: 403 ---IMGLAHKD---SSELLAEELMLAQNALSSITGEFSSDDLLGKIFSEFCIGK 450
>gi|399546926|ref|YP_006560234.1| tRNA modification GTPase MnmE [Marinobacter sp. BSs20148]
gi|399162258|gb|AFP32821.1| tRNA modification GTPase MnmE [Marinobacter sp. BSs20148]
Length = 456
Score = 328 bits (841), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 184/470 (39%), Positives = 266/470 (56%), Gaps = 26/470 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT PG+ GVGI+R+SG I + + KPR+A Y F + +ID+G+
Sbjct: 8 IAAIATAPGQAGVGIVRVSGPQATVIAHSLLGY---EPKPRYAHYGPFKDRQGELIDEGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F PHS+TGEDV EL GHGG +IL +LL ++G RLA PGEF++RAFLN+K
Sbjct: 65 GLFFPNPHSFTGEDVFELQGHGGTVILDLLLREVC----ALGARLARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI +S+E AA+ A+ S+ G FS+ I L+D + +LR +E + DFPEE
Sbjct: 121 LDLAQAEAIADLIESSSEQAARCAVRSMQGVFSRRIETLVDAITHLRIYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L ++ +L I+ + ++ ++R+G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDF-LADGKVATDLQSLRDQLQGIMLEAEQGTILRDGMKVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT+I GTTRD + + I I+ I DTAG+ D +++EVE+IGI R W E
Sbjct: 240 EAAIVTAIEGTTRDVLREHIHIDGMPLHIIDTAGLRD-------SLDEVEQIGIARAWDE 292
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNIN--YKN 362
++ +D I+ + DA D+ I P P+ + NK+D SG +
Sbjct: 293 IRQADRILLMVDATTTDKISPDEIWPDFIDQLPAAAPITVIRNKVDLSGESVGLFELSPQ 352
Query: 363 NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKI 422
I L+A G++ LR+ L + T E +LAR RH+ +L A +L +
Sbjct: 353 QAPVIRLAAKSSAGLDALRDHLKQCMGFASTTEGG-FLARRRHLDALERAAGFL-----V 406
Query: 423 INQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q++ EL+AEDLR L I GK T ++LL IF FCIGK
Sbjct: 407 QGQAQLEGYGAGELLAEDLRAAQNALGEITGKITPDELLGKIFGSFCIGK 456
>gi|190171214|gb|ACE63677.1| ThdF [Enterobacter helveticus]
Length = 427
Score = 328 bits (840), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 179/445 (40%), Positives = 263/445 (59%), Gaps = 23/445 (5%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SGK + + V K K PR+A Y F +N +D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRISGKQARDVAQAVLGKLPK---PRYADYLPFKDSDNTPLDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL L I G+R+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRILTI---PGVRIARPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS +N L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G + AI
Sbjct: 176 LSDGKIEAQLNTVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWKEIEQA 288
Query: 312 DIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368
D ++++ D D + + P N+P+ V NK D +G ++ N + I
Sbjct: 289 DRVLFMVDGTTTDAVDPAQIWPDFMARLPQNLPITVVRNKADVTGEPAGLSEVNGHSLIR 348
Query: 369 LSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEK 428
LSA G+ +LR+ L + +E +LAR RH+ +L EA +L + +
Sbjct: 349 LSARSGEGVEVLRDHLKSSMGFDTNMEGG-FLARRRHLQALEEAANHLQQGKAQLLGAWA 407
Query: 429 NFEKNLELIAEDLRFCHEKLSSIIG 453
EL+AE+LR + LS I G
Sbjct: 408 G-----ELLAEELRLAQQSLSEITG 427
>gi|356960377|ref|ZP_09063359.1| tRNA modification GTPase TrmE [gamma proteobacterium SCGC
AAA001-B15]
Length = 446
Score = 327 bits (839), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 193/472 (40%), Positives = 280/472 (59%), Gaps = 27/472 (5%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKT-KKQLKPRFATYSSFFCKNN 60
+ K I +AT G+ G+G++R+SG + +++ K +L+PR A Y SF+ + +
Sbjct: 1 MHKVETICALATAIGQSGIGVVRVSGP----LSKVIANKVLNVELEPRVAYYGSFYDEES 56
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
N +DKG+ I+F PHSYTGEDV+ELHGHGG +L LL + G+RL+ PGEFTK
Sbjct: 57 NQVDKGVAIFFPGPHSYTGEDVLELHGHGGTSVLRKLLETV----TFFGVRLSEPGEFTK 112
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN K+DL+Q EA+ DLI AS++ +A SA+ SLSG+FS+ IN LL LI+LR +E +
Sbjct: 113 RAFLNGKMDLVQAEAVQDLIQASSDKSALSAVRSLSGEFSEKINQLLSDLIDLRVFVEAT 172
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DF +E + L ++ +L +KK+LL I+ + A++R+GL+V + G+PN GKSSL
Sbjct: 173 IDFSDEEIDF-LESHEASTKLEVLKKELLDILDSANQGAILRDGLHVAIAGKPNSGKSSL 231
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L AIVT IAGTTRD + +TI ++ I DTAG + K+ N +E+ G
Sbjct: 232 LNALTKQPSAIVTDIAGTTRDVLKETIHVDGMPLHIIDTAG-------LHKSDNIIEQEG 284
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
I R E+ N+D+++ V +A K + D I+ + M P+I + NKID + I
Sbjct: 285 IRRAHTEINNADVVLLVYEA---KDSSADPSILPDVMMGKPIIAIRNKIDLLKAKAEIRQ 341
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
I LSA GI LLR L D+ +S+ +LAR+RHI ++ ++ AI
Sbjct: 342 FEGQTEISLSAKFGDGIELLRQALSDIAGYNPEGDST-FLARKRHILAIESTLISINSAI 400
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AEDLR LS I G+ +++DLL IFS FCIGK
Sbjct: 401 GQLEVGAS------ELVAEDLRQAGMSLSMITGEFSSDDLLGEIFSSFCIGK 446
>gi|190171256|gb|ACE63698.1| ThdF [Pantoea sp. E147]
Length = 439
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 182/461 (39%), Positives = 268/461 (58%), Gaps = 31/461 (6%)
Query: 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71
ATPPGRGGVGI+R+SG E+ + K KPR+A Y F + ++D+G+ ++F
Sbjct: 3 ATPPGRGGVGILRVSGAQ---AAEVARQLLGKLPKPRYADYLPFTDSDGRVLDQGIALWF 59
Query: 72 KAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLI 131
P+S+TGEDV+EL GHGGP+IL +LL + + G+R+A PGEF++RAFLN+KLDL
Sbjct: 60 PGPNSFTGEDVLELQGHGGPVILDLLLKRIVAL---PGVRIAQPGEFSERAFLNDKLDLA 116
Query: 132 QVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELI 191
Q EAI DLI+AS+E AA+SA+ SL G FS IN L++ L +LR +E + DFP+E +
Sbjct: 117 QAEAIADLIDASSEQAARSAVNSLQGVFSTRINHLVEALTHLRIYVEAAIDFPDEEIDF- 175
Query: 192 LNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
L+ +L + L + + ++ +L+R G+ VV+ G+PN GKSSL N+L G D AI
Sbjct: 176 LSDGRIEAQLNTVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRDAAI 235
Query: 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNS 311
VT IAGTTRD + + I I+ I DTAG +++ +EVE+IGIER W E++ +
Sbjct: 236 VTDIAGTTRDVLREHIHIDGMPLHIIDTAG-------LREASDEVERIGIERAWQEIEQA 288
Query: 312 DIIIYVQDARYDKH-------TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
D ++++ D DF + P +P+ V NK D +G + N
Sbjct: 289 DRVLFMVDGTTTDATEAAAIWPDF----VSRLPPELPITVVRNKADVTGESLGLTEVNGH 344
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
+ I LSA G++ LR+ L + +E +LAR RH+ +L A +L +
Sbjct: 345 SLIRLSARTSAGVDELRDHLKQSMGFAGDMEGG-FLARRRHLQALELAATHLQQGKAQLL 403
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIF 465
+ EL+AE+LR + LS I G+ T++DLL IF
Sbjct: 404 GAWAG-----ELLAEELRLAQQALSEITGEFTSDDLLGRIF 439
>gi|77166532|ref|YP_345057.1| tRNA modification GTPase TrmE [Nitrosococcus oceani ATCC 19707]
gi|123593187|sp|Q3J6L9.1|MNME_NITOC RecName: Full=tRNA modification GTPase MnmE
gi|76884846|gb|ABA59527.1| tRNA modification GTPase trmE [Nitrosococcus oceani ATCC 19707]
Length = 458
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 191/465 (41%), Positives = 278/465 (59%), Gaps = 22/465 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IATPPG+G VGI+R+SG I E V T + PR+AT+ F + I+D+GL
Sbjct: 16 IAAIATPPGQGSVGIVRVSGPFCRQIAEQV---TGRVPPPRYATFCHFRNRYGEILDQGL 72
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++YF PHS+TGEDV+EL GHGGP I+ LLSS L++G +RLA PGEF++RAFLNNK
Sbjct: 73 ILYFPGPHSFTGEDVLELQGHGGPAIMDWLLSSVLQLG----VRLARPGEFSERAFLNNK 128
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EAI DLI +++E AA+SA+ SL G+FS I L ++L LR ++E + DF +E+
Sbjct: 129 IDLAQAEAIADLIESASEQAARSALRSLHGEFSAQIQTLREQLTELRCVVEANIDFSDED 188
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ I + L +I+ L I + ++ AL+R G+ VVL G+PNVGKSSL N L G
Sbjct: 189 IDFI-ERGMVAERLKEIQSTLQSIHRSARQGALLREGVRVVLAGRPNVGKSSLHNRLAGF 247
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT + GTTRD + + I I+ ++DTAG+ NSK + +E+ G+ RT E
Sbjct: 248 EAAIVTDVPGTTRDLLRENITIDGLPIHLSDTAGLH--NSK-----DTIEQEGMRRTREE 300
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANI 367
L ++D ++ V D + T+ ++ I+ P ++ ++NKID SG + +
Sbjct: 301 LIHADHVLLVADDQ-SGLTEAEQAILDELPDDVTYTLIFNKIDLSGAPAGRWEELQGIAL 359
Query: 368 YLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSE 427
LSA G++LL L + + E + AR RH+ +L A + A KI+ +
Sbjct: 360 RLSALTGAGMDLLCQRLKECAGFDRESEGC-FSARRRHLEALQRAGAAVVVARKILG--D 416
Query: 428 KNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
K E E++AE+LR L+ I G+ ++DLL IFS FCIGK
Sbjct: 417 KGAE---EILAEELRQAQNALAEITGEYRSDDLLGEIFSTFCIGK 458
>gi|260072625|gb|ACX30523.1| tRNA modification GTPase [uncultured SUP05 cluster bacterium]
Length = 447
Score = 326 bits (836), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 190/472 (40%), Positives = 279/472 (59%), Gaps = 25/472 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M + I +A+ G+GG+GI+R+SG +EI K KPR+A Y SFF ++
Sbjct: 1 MSHNETTICALASSTGQGGIGIVRVSGAR---CIEIAKKMLGHVPKPRYAHYGSFFNQDG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
IDKG+ ++F AP+S+TGEDV+E GHGG +++ LL S + +G SI A PGEF+K
Sbjct: 58 VEIDKGVALFFPAPNSFTGEDVLEFQGHGGILVMRSLLESAMALG-SIA---AEPGEFSK 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN K+DL+Q EA+ DLI+AS+E +A+SA+ SLSG+FS +N L LI LR +E +
Sbjct: 114 RAFLNGKMDLLQAEAVADLIDASSEQSARSALRSLSGEFSDQVNALTKALIELRVFVEAT 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DF +E + LN ++ IK+ + I+ ++ A++R GL VV+ G+PN GKSSL
Sbjct: 174 IDFSDEEIDF-LNSEGVGLKVAHIKESIESILTSAEQGAILREGLTVVIAGKPNAGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L AIVT IAGTTRD + +TI +N I DTAG+ KI E+ G
Sbjct: 233 LNALTQRSSAIVTDIAGTTRDVLKETIHVNGMPLNIIDTAGLHVSEDKI-------EQEG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
I+R E++ +D+++ V DA+ DK D I+ + P++ + NK+D + ++
Sbjct: 286 IKRAHGEIERADVVLMVFDAQ-DKEPDL--SILPAVVKDKPLLLIKNKVDLTSESTGMSK 342
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAI 420
N I L A + G++LLR L D+ + T E LAR+RHI +L A + A+
Sbjct: 343 VNGRTQILLCAKRADGLDLLRQELSDIAGLSDTGE-GVLLARKRHIVALESALKSIHSAL 401
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ ++ EL+AEDLR + L SI G+ +++DLL IFS FCIGK
Sbjct: 402 EQLDNGAS------ELVAEDLRQAGQSLGSITGEFSSDDLLGEIFSSFCIGK 447
>gi|126668974|ref|ZP_01739913.1| tRNA modification GTPase [Marinobacter sp. ELB17]
gi|126626558|gb|EAZ97216.1| tRNA modification GTPase [Marinobacter sp. ELB17]
Length = 456
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 183/470 (38%), Positives = 264/470 (56%), Gaps = 26/470 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT PG+ GVGI+R+SG I + K PR+A Y F + +ID+G+
Sbjct: 8 IAAIATAPGQAGVGIVRVSGPQATVIAHSLLGYAPK---PRYAHYGPFKDSQDELIDEGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++F P+S+TGEDV EL GHGG +IL +LL ++G RLA PGEF++RAFLN+K
Sbjct: 65 GLFFPNPYSFTGEDVFELQGHGGTVILDLLLREVC----ALGARLARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI +S+E AA+ A+ S+ G FS+ I L+D + +LR +E + DFPEE
Sbjct: 121 LDLAQAEAIADLIESSSEQAARCAVRSMQGVFSRRIETLVDAVTHLRIYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L +L ++ +L I+ + ++ ++R+G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDF-LADGKVATDLQSLRDQLQGIMLEAQQGTIMRDGMKVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT+I GTTRD + + I I+ I DTAG+ D + +EVE+IGI R W E
Sbjct: 240 EAAIVTAIEGTTRDVLREHIHIDGMPLHIIDTAGLRD-------SPDEVEQIGIARAWDE 292
Query: 308 LKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQKNI--NYKN 362
++ +D I+ + DA T + I P P+ + NK+D SG +
Sbjct: 293 IRQADRILLMVDATTTDRTSPHEIWPDFIDQLPAAAPITVIRNKVDLSGESVGLIELSPQ 352
Query: 363 NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKI 422
I L+A G++ LR+ L + T E +LAR RH+ +L A +L +
Sbjct: 353 QAPVIRLAAKSSAGLDALRDHLKQCMGFASTTEGG-FLARRRHLDALERAAEFL-----V 406
Query: 423 INQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q++ EL+AEDLR L I G+ T +DLL IF FCIGK
Sbjct: 407 QGQTQLEGYGAGELLAEDLRAAQSALGEITGQITPDDLLGKIFGSFCIGK 456
>gi|410665010|ref|YP_006917381.1| tRNA modification GTPase TrmE [Simiduia agarivorans SA1 = DSM
21679]
gi|409027367|gb|AFU99651.1| tRNA modification GTPase TrmE [Simiduia agarivorans SA1 = DSM
21679]
Length = 452
Score = 325 bits (832), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 190/470 (40%), Positives = 267/470 (56%), Gaps = 30/470 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IATP GRGGVGIIR+SG +I E + +T PR A Y F +D+G+
Sbjct: 8 IAAIATPTGRGGVGIIRVSGPASLAIAEAITGRTPT---PRQAHYLPFIDDEGRTLDQGI 64
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++FK+P+S+TGED++EL GHGGPI++ LL CL ++G RLA PGEF++RAFLN+K
Sbjct: 65 ALFFKSPNSFTGEDILELQGHGGPIVMDWLLRRCL----NLGARLARPGEFSERAFLNDK 120
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI+A T+ AA++A+ SL G FS+ + L L LR +E + DFPEE
Sbjct: 121 LDLTQAEAIADLIDADTDQAARNALNSLQGAFSQRVEALQHALTQLRIYVEAAIDFPEEE 180
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L+ +L I L ++ + ++ L R G+ VV+ G+PN GKSSL N+L G
Sbjct: 181 IDF-LSDGRVETDLQAILSHLSQVYAEARQGVLTREGMTVVIAGRPNAGKSSLLNALAGR 239
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
D AIVT I GTTRD + + IQI+ I DTAG+ D N ++VE IGIER
Sbjct: 240 DTAIVTDIEGTTRDILREHIQIDGLPLHIIDTAGLRD-------NPDQVEAIGIERALAA 292
Query: 308 LKNSDIIIYVQDA-RYDKHTDFDKKIIKNFPMNI-PVIYVW--NKIDYSGHQKN-INYKN 362
++ +D I+ VQD R D T D ++ + ++ P W NK D + H +N +
Sbjct: 293 IRTADRILLVQDPLRKDAQT-LD-ALMGDLAAHVNPDKITWLTNKCDQTEHLPGWVNEQP 350
Query: 363 NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKI 422
I +SA G++ LR L ++ E S + AR RH+ +L+ +L +
Sbjct: 351 --PTIAISAKTGAGLDCLRQHLKQVMGYQMGTEGS-FTARRRHLDALSRCEQHL-----L 402
Query: 423 INQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q++ EL+AEDLR L I G + ++LL IFS FCIGK
Sbjct: 403 TGQAQLKHLAAGELLAEDLRAAQRALGEITGSMSADELLGKIFSSFCIGK 452
>gi|254373237|ref|ZP_04988726.1| GTP-binding protein [Francisella tularensis subsp. novicida
GA99-3549]
gi|151570964|gb|EDN36618.1| GTP-binding protein [Francisella novicida GA99-3549]
Length = 450
Score = 324 bits (830), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 215/478 (44%), Positives = 298/478 (62%), Gaps = 34/478 (7%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M TK++ I+ IATP G GG+GIIR+SG + +I E K TKKQLKPR+AT+ + + +N
Sbjct: 1 MYTKDT-IVAIATPQGNGGIGIIRISGIDALAIAE---KLTKKQLKPRYATFCNVY-NDN 55
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
IID G+VI+FKAP SYTGEDV+E+ HG P IL++++ + L S G R+A GEFT+
Sbjct: 56 EIIDHGIVIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKAAL----SCGARMAKAGEFTE 111
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLNNKLDL Q EA+ D+INAS+E AAKSA SL G FSK IN LL+KLI LR +E S
Sbjct: 112 RAFLNNKLDLAQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYVEAS 171
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE L + L +I K +L + K+ ++ G+ ++L+G+PN GKSSL
Sbjct: 172 IDFPEEEINF-LEDQKIHSSLEEIYKVILAVKNSCKQGVILAEGITLILVGKPNAGKSSL 230
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVTSIAGTTRD + + IQIN I DTAG ++ + + +E G
Sbjct: 231 LNALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAG-------LRNSDDIIESEG 283
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFD--KKIIKNF----PMNIPVIYVWNKIDYSGH 354
I+R +++ +D +++V D F K+II F P +I + YV NKID
Sbjct: 284 IKRAIKKIQEADQVLFVTDDYTSSQVKFSDIKEIIPEFYDQIPKDIDITYVHNKIDL--- 340
Query: 355 QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
K + + N+ +IY+SA IGI+ L+ +L+ + T E S Y ARERH+ ++N A
Sbjct: 341 LKEVPH-NHANHIYISAENNIGIDKLKEHILNKVGYTNQNE-SIYTARERHVTAINNAFE 398
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ A E+ N EL+AE+L E L+SI G+ +++DLL IFS FCIGK
Sbjct: 399 HIKLA------KEQLELGNGELLAEELLIVQEYLNSITGEFSSDDLLGEIFSSFCIGK 450
>gi|334132417|ref|ZP_08506174.1| tRNA modification GTPase TrmE [Methyloversatilis universalis FAM5]
gi|333442383|gb|EGK70353.1| tRNA modification GTPase TrmE [Methyloversatilis universalis FAM5]
Length = 393
Score = 323 bits (829), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 177/414 (42%), Positives = 254/414 (61%), Gaps = 24/414 (5%)
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+ID G+ ++F+AP SYTGE V+ELHGHGG +L LL+ CLE+G R A PGEFT+R
Sbjct: 1 MIDHGIALWFEAPASYTGEHVLELHGHGGTAVLQALLARCLELGA----RPARPGEFTER 56
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN++LDL Q EA+ DLI+A+T SAA+SAM SL G+FS+ ++ L + L+NLR +E +
Sbjct: 57 AFLNDRLDLAQAEAVADLIDATTTSAARSAMRSLDGEFSRHVHGLEEALVNLRMFVEATL 116
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFPEE+ E L + N+L ++ + L ++ Q+ + A++R GL VVL G PNVGKSSL
Sbjct: 117 DFPEEDVEF-LEQAGARNKLAEVMQALDRLRQRARCGAVLREGLTVVLAGAPNVGKSSLL 175
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + I I+ + DTAG +++ + VE+ GI
Sbjct: 176 NALAGEERAIVTDIAGTTRDTLRELISIDGVPLHVIDTAG-------LRETDDPVEQAGI 228
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDF---DKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
RT EL+ + ++++ DA T F + I P +P I V+NKID
Sbjct: 229 ARTRRELERAHAVLHLVDA----STGFDAAAQAIDAQLPRGLPRIRVFNKIDLLDIAARS 284
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
++ + N++LS G++LL+ LLD + E + AR RH+H+L+ A +L
Sbjct: 285 EVRDGVVNVWLSVRSGAGLDLLQKALLDCVAWQGGAEDA-LAARTRHLHALDRAVDHLEA 343
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
A + I+ + LEL AE+LR H L I G+ T +DLL IFS+FCIGK
Sbjct: 344 AGRCISGA----VLRLELFAEELRLAHRALGDITGEFTPDDLLGEIFSRFCIGK 393
>gi|407801752|ref|ZP_11148595.1| tRNA modification GTPase [Alcanivorax sp. W11-5]
gi|407024069|gb|EKE35813.1| tRNA modification GTPase [Alcanivorax sp. W11-5]
Length = 460
Score = 323 bits (829), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 189/474 (39%), Positives = 275/474 (58%), Gaps = 31/474 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ IAT PGRGGVGI+RLSG ++ + ++ L PR A +SSF +ID+GL
Sbjct: 9 IVAIATAPGRGGVGIVRLSGPRALAVASALMPASRT-LAPRHAHFSSFRDAEGQLIDEGL 67
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
V+YF P S+TGEDV+EL GHGGP++L L+ +C+ G R A PGEF+ RAFLN++
Sbjct: 68 VLYFPGPKSFTGEDVVELQGHGGPVLLDQLVQACIRQGA----RQARPGEFSMRAFLNDR 123
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q E I DLI+A T +AA++A+ SL G FS +N L+++LI LR +E + DFPEE
Sbjct: 124 MDLTQAEGIADLIDAGTVAAARAAVGSLRGAFSDAVNNLVEQLIQLRIYVEAAIDFPEEE 183
Query: 188 QELILNKN--DFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLV 245
+ + + N+LI ++L ++G +L+R G+ +V+ G+PN GKSSL N+L
Sbjct: 184 IDFLSDGKVAGDLNDLIHATAEVLATARRG---SLLREGMTLVIAGRPNAGKSSLLNALA 240
Query: 246 GSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTW 305
G+DVAIVT IAGTTRD + +TIQ++ + DTAG ++++ + VE+ GI R W
Sbjct: 241 GNDVAIVTDIAGTTRDVLRETIQLDGMPLNLIDTAG-------LRESPDVVEQEGIRRAW 293
Query: 306 VELKNSDIIIYVQD------ARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQKNI 358
++ +D I+ V D A+ D+ + + + IP+ V NK D SG I
Sbjct: 294 QAIEQADRILLVVDSTTVTPAQLDQPDQLLPEGQRTLSSLGIPLTLVLNKADLSGLPPGI 353
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
N+ + +SA+ G++ LR L + + ESSP+ AR RH+ +L A L
Sbjct: 354 Q-TNHPDTLAISAAHGNGLDALREYLKQSV-GFHSGESSPFSARRRHLSALELALTSLQH 411
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + EL+AEDLR L I G + +DLL IFS FCIGK
Sbjct: 412 GARQLGDHAAG-----ELLAEDLRGAQRALEEITGVFSADDLLGRIFSSFCIGK 460
>gi|118497883|ref|YP_898933.1| tRNA modification GTPase TrmE [Francisella novicida U112]
gi|194323857|ref|ZP_03057633.1| tRNA modification GTPase TrmE [Francisella novicida FTE]
gi|166991111|sp|A0Q7G4.1|MNME_FRATN RecName: Full=tRNA modification GTPase MnmE
gi|118423789|gb|ABK90179.1| GTPase of unknown function [Francisella novicida U112]
gi|194322221|gb|EDX19703.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
novicida FTE]
Length = 450
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 214/478 (44%), Positives = 299/478 (62%), Gaps = 34/478 (7%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M TK++ I+ IATP G GG+GIIR+SG + +I E K TKKQLKPR+AT+ + + +N
Sbjct: 1 MYTKDT-IVAIATPQGNGGIGIIRISGIDALAIAE---KLTKKQLKPRYATFCNVY-NDN 55
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
IID G+VI+FKAP SYTGEDV+E+ HG P IL++++ + L + G R+A GEFT+
Sbjct: 56 EIIDHGIVIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKAAL----NCGARMAKAGEFTE 111
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLNNKLDL Q EA+ D+INAS+E AAKSA SL G FSK IN LL+KLI LR +E S
Sbjct: 112 RAFLNNKLDLTQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYVEAS 171
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE L + L +I K +L + K+ ++ G+ ++L+G+PN GKSSL
Sbjct: 172 IDFPEEEINF-LEDQKIHSSLEEIYKVILAVKNSCKQGVILAEGITLILVGKPNAGKSSL 230
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVTSIAGTTRD + + IQIN I DTAG ++ + + +E G
Sbjct: 231 LNALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAG-------LRNSDDIIESEG 283
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFD--KKIIKNF----PMNIPVIYVWNKIDYSGH 354
I+R +++ +D +++V D + F K+II F P +I + YV NKID
Sbjct: 284 IKRAIKKIQEADQVLFVTDDYTNSQVKFSDIKEIIPEFYDQIPKDIDITYVHNKIDL--- 340
Query: 355 QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
K + + N+ +IY+SA IGI+ L+ +L+ + T E S Y ARERH+ ++N A
Sbjct: 341 LKEVPH-NHANHIYISAENNIGIDKLKEHILNKVGYTNQNE-SIYTARERHVTAINNAFE 398
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ A E+ N EL+AE+L E L+SI G+ +++DLL IFS FCIGK
Sbjct: 399 HIKLA------KEQLELGNGELLAEELLIVQEYLNSITGEFSSDDLLGEIFSSFCIGK 450
>gi|187931774|ref|YP_001891759.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
mediasiatica FSC147]
gi|208779948|ref|ZP_03247292.1| tRNA modification GTPase TrmE [Francisella novicida FTG]
gi|254374693|ref|ZP_04990174.1| tRNA modification GTPase trmE family protein [Francisella novicida
GA99-3548]
gi|385793273|ref|YP_005826249.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|151572412|gb|EDN38066.1| tRNA modification GTPase trmE family protein [Francisella novicida
GA99-3548]
gi|187712683|gb|ACD30980.1| GTPase [Francisella tularensis subsp. mediasiatica FSC147]
gi|208744403|gb|EDZ90703.1| tRNA modification GTPase TrmE [Francisella novicida FTG]
gi|332678598|gb|AEE87727.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Francisella cf.
novicida Fx1]
Length = 450
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 214/478 (44%), Positives = 299/478 (62%), Gaps = 34/478 (7%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M TK++ I+ IATP G GG+GIIR+SG + +I E K TKKQLKPR+AT+ + + +N
Sbjct: 1 MYTKDT-IVAIATPQGNGGIGIIRISGIDALAIAE---KLTKKQLKPRYATFCNVY-NDN 55
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
IID G+VI+FKAP SYTGEDV+E+ HG P IL++++ + L + G R+A GEFT+
Sbjct: 56 EIIDHGIVIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKAAL----NCGARMAKAGEFTE 111
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLNNKLDL Q EA+ D+INAS+E AAKSA SL G FSK IN LL+KLI LR +E S
Sbjct: 112 RAFLNNKLDLAQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYVEAS 171
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE L + L +I K +L + K+ ++ G+ ++L+G+PN GKSSL
Sbjct: 172 IDFPEEEINF-LEDQKIHSSLEEIYKVILAVKNSCKQGVILAEGITLILVGKPNAGKSSL 230
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVTSIAGTTRD + + IQIN I DTAG ++ + + +E G
Sbjct: 231 LNALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAG-------LRNSDDIIESEG 283
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFD--KKIIKNF----PMNIPVIYVWNKIDYSGH 354
I+R +++ +D +++V D + F K+II F P +I + YV NKID
Sbjct: 284 IKRAIKKIQEADQVLFVTDDYTNSQVKFSDIKEIIPEFYDQIPKDIDITYVHNKIDL--- 340
Query: 355 QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
K + + N+ +IY+SA IGI+ L+ +L+ + T E S Y ARERH+ ++N A
Sbjct: 341 LKEVPH-NHANHIYISAENNIGIDKLKEHILNKVGYTNQNE-SIYTARERHVTAINNAFE 398
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ A E+ N EL+AE+L E L+SI G+ +++DLL IFS FCIGK
Sbjct: 399 HIKLA------KEQLELGNGELLAEELLIVQEYLNSITGEFSSDDLLGEIFSSFCIGK 450
>gi|89256498|ref|YP_513860.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
holarctica LVS]
gi|156502609|ref|YP_001428674.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|422938871|ref|YP_007012018.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
holarctica FSC200]
gi|423050863|ref|YP_007009297.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
holarctica F92]
gi|122500633|sp|Q2A342.1|MNME_FRATH RecName: Full=tRNA modification GTPase MnmE
gi|166991110|sp|A7NCL5.1|MNME_FRATF RecName: Full=tRNA modification GTPase MnmE
gi|89144329|emb|CAJ79616.1| tRNA modification GTPase trmE family protein [Francisella
tularensis subsp. holarctica LVS]
gi|156253212|gb|ABU61718.1| tRNA modification GTPase [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|407294022|gb|AFT92928.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
holarctica FSC200]
gi|421951585|gb|AFX70834.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
holarctica F92]
Length = 450
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 215/478 (44%), Positives = 298/478 (62%), Gaps = 34/478 (7%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M TK++ I+ IATP G GG+GIIR+SG + I E K TKKQLKPR+AT+ + + +N
Sbjct: 1 MYTKDT-IVAIATPQGNGGIGIIRISGIDALEIAE---KLTKKQLKPRYATFCNVY-NDN 55
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
IID G+VI+FKAP SYTGEDV+E+ HG P IL++++ + L + G R+A GEFT+
Sbjct: 56 EIIDHGIVIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKAAL----NCGARMAKAGEFTE 111
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLNNKLDL Q EA+ D+INAS+E AAKSA SL G FSK IN LL+KLI LR +E S
Sbjct: 112 RAFLNNKLDLAQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYVEAS 171
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE L + L +I K +L I K+ ++ G+ ++L+G+PN GKSSL
Sbjct: 172 IDFPEEEINF-LEDQKIHSSLEEIYKVILAIKNSCKQGVILAEGITLILVGKPNAGKSSL 230
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVTSIAGTTRD + + IQIN I DTAG ++ + + +E G
Sbjct: 231 LNALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAG-------LRNSDDIIESEG 283
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFD--KKIIKNF----PMNIPVIYVWNKIDYSGH 354
I+R +++ +D +++V D + F K+II F P +I + YV NKID
Sbjct: 284 IKRAIKKIQEADQVLFVTDDYTNSQVKFSDIKEIIPEFYDQIPKDIDITYVHNKIDL--- 340
Query: 355 QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
K + + N+ +IY+SA IGI+ L+ +L+ + T E S Y ARERH+ ++N A
Sbjct: 341 LKEVPH-NHANHIYISAENNIGIDKLKEHILNKVGYTNQNE-SIYTARERHVTAINNAFE 398
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ A E+ N EL+AE+L E L+SI G+ +++DLL IFS FCIGK
Sbjct: 399 HIKLA------KEQLELGNGELLAEELLIVQEYLNSITGEFSSDDLLGEIFSSFCIGK 450
>gi|254369611|ref|ZP_04985622.1| hypothetical protein FTAG_01502 [Francisella tularensis subsp.
holarctica FSC022]
gi|157122565|gb|EDO66700.1| hypothetical protein FTAG_01502 [Francisella tularensis subsp.
holarctica FSC022]
Length = 450
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 215/478 (44%), Positives = 299/478 (62%), Gaps = 34/478 (7%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M TK++ I+ IATP G GG+GIIR+SG + +I E K TKKQLKPR+AT+ + + +N
Sbjct: 1 MYTKDT-IVAIATPQGNGGIGIIRISGIDALAIAE---KLTKKQLKPRYATFCNVY-NDN 55
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
IID G+VI+FKAP SYTGEDV+E+ HG P IL++++ + L + G R+A GEFT+
Sbjct: 56 EIIDHGIVIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKAAL----NCGARMAKAGEFTE 111
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLNNKLDL Q EA+ D+INAS+E AAKSA SL G FSK IN LL+KLI LR +E S
Sbjct: 112 RAFLNNKLDLAQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYLEAS 171
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE L + L +I K +L I K+ ++ G+ ++L+G+PN GKSSL
Sbjct: 172 IDFPEEEINF-LEDQKIHSSLEEIYKVILAIKNSCKQGVILAEGITLILVGKPNAGKSSL 230
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVTSIAGTTRD + + IQIN I DTAG ++ + + +E G
Sbjct: 231 LNALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAG-------LRNSDDIIESEG 283
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFD--KKIIKNF----PMNIPVIYVWNKIDYSGH 354
I+R +++ +D +++V D + F K+II F P +I + YV NKID
Sbjct: 284 IKRAIKKIQEADQVLFVTDDYTNSQVKFSDIKEIIPEFYDQIPKDIDITYVHNKIDL--- 340
Query: 355 QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
K + + N+ +IY+SA IGI+ L+ +L+ + T E S Y ARERH+ ++N A
Sbjct: 341 LKEVPH-NHANHIYISAENNIGIDKLKEHILNKVGYTNQNE-SIYTARERHVTAINNAFE 398
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ A E+ N EL+AE+L E L+SI G+ +++DLL IFS FCIGK
Sbjct: 399 HIKLA------KEQLELGNGELLAEELLIVQEYLNSITGEFSSDDLLGEIFSSFCIGK 450
>gi|134301618|ref|YP_001121586.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
tularensis WY96-3418]
gi|421751380|ref|ZP_16188428.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
tularensis AS_713]
gi|421753233|ref|ZP_16190232.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
tularensis 831]
gi|421756963|ref|ZP_16193853.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
tularensis 80700103]
gi|421758822|ref|ZP_16195663.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
tularensis 70102010]
gi|424674144|ref|ZP_18111068.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
tularensis 70001275]
gi|166991112|sp|A4IX14.1|MNME_FRATW RecName: Full=tRNA modification GTPase MnmE
gi|134049395|gb|ABO46466.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
tularensis WY96-3418]
gi|409087652|gb|EKM87741.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
tularensis 831]
gi|409087992|gb|EKM88076.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
tularensis AS_713]
gi|409091748|gb|EKM91737.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
tularensis 70102010]
gi|409093040|gb|EKM92999.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
tularensis 80700103]
gi|417435204|gb|EKT90121.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
tularensis 70001275]
Length = 450
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 214/478 (44%), Positives = 299/478 (62%), Gaps = 34/478 (7%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M TK++ I+ IATP G GG+GIIR+SG + +I E K TKKQLKPR+AT+ + + +N
Sbjct: 1 MYTKDT-IVAIATPQGNGGIGIIRISGIDALAIAE---KLTKKQLKPRYATFCNVY-NDN 55
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
IID G+VI+FKAP SYTGEDV+E+ HG P IL++++ + L + G R+A GEFT+
Sbjct: 56 EIIDHGIVIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKAAL----NCGARMAKAGEFTE 111
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLNNKLDL Q EA+ D+INAS+E AAKSA SL G FSK IN LL+KLI LR +E S
Sbjct: 112 RAFLNNKLDLAQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYVEAS 171
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE L + L +I K +L + K+ ++ G+ ++L+G+PN GKSSL
Sbjct: 172 IDFPEEEINF-LEDQKIHSSLEEIYKVILAVKNSCKQGVILAEGITLILVGKPNAGKSSL 230
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVTSIAGTTRD + + IQIN I DTAG ++ + + +E G
Sbjct: 231 LNALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAG-------LRNSDDIIESEG 283
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFD--KKIIKNF----PMNIPVIYVWNKIDYSGH 354
I+R +++ +D +++V D + F K+II F P +I + YV NKID
Sbjct: 284 IKRAIKKIQEADQVLFVTDDYTNSQVKFSDIKEIIPEFYDQIPKDIDITYVHNKIDL--- 340
Query: 355 QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
K + + N+ +IY+SA IGI+ L+ +L+ + T E S Y ARERH+ ++N A
Sbjct: 341 LKEVPH-NHANHIYISAENNIGIDKLKEHILNKVGYTNQNE-SIYTARERHVTAINNAFE 398
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ A E+ N EL+AE+L E L+SI G+ +++DLL IFS FCIGK
Sbjct: 399 HIKLA------REQLELGNGELLAEELLIVQEYLNSITGEFSSDDLLGEIFSSFCIGK 450
>gi|62260919|gb|AAX77946.1| unknown protein [synthetic construct]
Length = 485
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 213/478 (44%), Positives = 299/478 (62%), Gaps = 34/478 (7%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M TK++ I+ IATP G GG+GIIR+SG + +I E K TKKQLKPR+AT+ + + +N
Sbjct: 27 MYTKDT-IVAIATPQGNGGIGIIRISGIDALAIAE---KLTKKQLKPRYATFCNVY-NDN 81
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
IID G++I+FKAP SYTGEDV+E+ HG P IL++++ + L + G R+A GEFT+
Sbjct: 82 EIIDHGIIIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKAAL----NCGARMAKAGEFTE 137
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLNNKLDL Q EA+ D+INAS+E AAKSA SL G FSK IN LL+KLI LR +E S
Sbjct: 138 RAFLNNKLDLAQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYVEAS 197
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE L + L +I K +L + K+ ++ G+ ++L+G+PN GKSSL
Sbjct: 198 IDFPEEEINF-LEDQKIHSSLEEIYKVILAVKNSCKQGVILAEGITLILVGKPNAGKSSL 256
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVTSIAGTTRD + + IQIN I DTAG ++ + + +E G
Sbjct: 257 LNALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAG-------LRNSDDIIESEG 309
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFD--KKIIKNF----PMNIPVIYVWNKIDYSGH 354
I+R +++ +D +++V D + F K+II F P +I + YV NKID
Sbjct: 310 IKRAIKKIQEADQVLFVTDDYTNSQVKFSDIKEIIPEFYDQIPKDIDITYVHNKIDL--- 366
Query: 355 QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
K + + N+ +IY+SA IGI+ L+ +L+ + T ES Y ARERH+ ++N A
Sbjct: 367 LKEVPH-NHANHIYISAENNIGIDKLKEHILNKVGYTNQNESI-YTARERHVTAINNAFE 424
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ A E+ N EL+AE+L E L+SI G+ +++DLL IFS FCIGK
Sbjct: 425 HIKLA------KEQLELGNGELLAEELLIVQEYLNSITGEFSSDDLLGEIFSSFCIGK 476
>gi|115314929|ref|YP_763652.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
holarctica OSU18]
gi|122325057|sp|Q0BLL9.1|MNME_FRATO RecName: Full=tRNA modification GTPase MnmE
gi|115129828|gb|ABI83015.1| GTP-binding protein [Francisella tularensis subsp. holarctica
OSU18]
Length = 450
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 215/478 (44%), Positives = 298/478 (62%), Gaps = 34/478 (7%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M TK++ I+ IATP G GG+GIIR+SG + I E K TKKQLKPR+AT+ + + +N
Sbjct: 1 MYTKDT-IVAIATPQGNGGIGIIRISGIDALEIAE---KLTKKQLKPRYATFCNVY-NDN 55
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
IID G+VI+FKAP SYTGEDV+E+ HG P IL++++ + L + G R+A GEFT+
Sbjct: 56 EIIDHGIVIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKAAL----NCGARIAKAGEFTE 111
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLNNKLDL Q EA+ D+INAS+E AAKSA SL G FSK IN LL+KLI LR +E S
Sbjct: 112 RAFLNNKLDLAQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYVEAS 171
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE L + L +I K +L I K+ ++ G+ ++L+G+PN GKSSL
Sbjct: 172 IDFPEEEINF-LEDQKIHSSLEEIYKVILAIKNSCKQGVILAEGITLILVGKPNAGKSSL 230
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVTSIAGTTRD + + IQIN I DTAG ++ + + +E G
Sbjct: 231 LNALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAG-------LRNSDDIIESEG 283
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFD--KKIIKNF----PMNIPVIYVWNKIDYSGH 354
I+R +++ +D +++V D + F K+II F P +I + YV NKID
Sbjct: 284 IKRAIKKIQEADQVLFVTDDYTNSQVKFSDIKEIIPEFYDQIPKDIDITYVHNKIDL--- 340
Query: 355 QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
K + + N+ +IY+SA IGI+ L+ +L+ + T E S Y ARERH+ ++N A
Sbjct: 341 LKEVPH-NHANHIYISAENNIGIDKLKEHILNKVGYTNQNE-SIYTARERHVTAINNAFE 398
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ A E+ N EL+AE+L E L+SI G+ +++DLL IFS FCIGK
Sbjct: 399 HIKLA------KEQLELGNGELLAEELLIVQEYLNSITGEFSSDDLLGEIFSSFCIGK 450
>gi|74318842|ref|YP_316582.1| tRNA modification GTPase TrmE [Thiobacillus denitrificans ATCC
25259]
gi|123611091|sp|Q3SF39.1|MNME_THIDA RecName: Full=tRNA modification GTPase MnmE
gi|74058337|gb|AAZ98777.1| tRNA modification GTPase TrmE [Thiobacillus denitrificans ATCC
25259]
Length = 446
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 187/465 (40%), Positives = 275/465 (59%), Gaps = 30/465 (6%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I +AT PGRGGVG++R+SG ++ + + + + PR TY F + +D+G+
Sbjct: 12 IAAVATAPGRGGVGVVRVSGPDVGPLAVAILGRLPE---PRHVTYCRFLDRAGAPLDEGI 68
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YF APHS+TGE V+EL GHGGP++L ++L CLE+G RLA PGEF++RAFLN K
Sbjct: 69 ALYFAAPHSFTGEHVLELQGHGGPVVLDLILQRCLELGA----RLAEPGEFSRRAFLNGK 124
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EA+ DLI+A++ AA+SA+ SLSG+FS I+ L+++L+ LRTL+E + DFP+E
Sbjct: 125 LDLAQAEAVADLIDAASAEAARSALRSLSGEFSARIDELVEQLVRLRTLVEATLDFPDEE 184
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L + D F L I + + Q ++ L+R GL VVL+GQPNVGKSSL N L G
Sbjct: 185 IDF-LEQADAFGRLKAIGTSVAAVRSQARQGVLLREGLTVVLVGQPNVGKSSLLNRLAGF 243
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
D AIVT IAGTTRD + + IQI + DTAG +++ + +E++GI R+W
Sbjct: 244 DAAIVTEIAGTTRDTVREAIQIEGVPIHVIDTAG-------LRETSDPIEQLGIARSWEA 296
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANI 367
++ +D+ + + DA + + +I+ P ++ + V NKID +G I
Sbjct: 297 VEKADVALLLVDAAHGVGA-HEAQILAKLP-DVVRLTVHNKIDVAGEAPRATAD----EI 350
Query: 368 YLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSE 427
+LSA G++LLR LL Q ++AR RH+ +L+ A ++ A + Q
Sbjct: 351 WLSAKSGEGVDLLRAKLLQ-AAGWQAAGEGAFMARTRHLDALDRAARHIEQAGAVARQ-- 407
Query: 428 KNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
LEL AE+LR L+ I G+ + + LL IF FCIGK
Sbjct: 408 ------LELFAEELRLAQAALAEITGEFSADALLGEIFGSFCIGK 446
>gi|300115604|ref|YP_003762179.1| tRNA modification GTPase TrmE [Nitrosococcus watsonii C-113]
gi|299541541|gb|ADJ29858.1| tRNA modification GTPase TrmE [Nitrosococcus watsonii C-113]
Length = 459
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 184/474 (38%), Positives = 274/474 (57%), Gaps = 32/474 (6%)
Query: 4 KNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLK-----PRFATYSSFFCK 58
K+ I IATPPG+G VGI+R+SG +C++ KQ+ PR+A + F +
Sbjct: 13 KSDTIAAIATPPGQGSVGIVRVSGP--------LCRQVAKQVTGRVPLPRYALFGYFRNR 64
Query: 59 NNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEF 118
+ +ID+G+ +YF PHS+TGEDV+EL GHG P ++ LLS L++G RLA PGEF
Sbjct: 65 DGELIDQGVALYFPGPHSFTGEDVLELQGHGSPAVMDWLLSRVLQLGA----RLARPGEF 120
Query: 119 TKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIE 178
++RAFLNNK+DL Q EAI DLI ++++ AA+SA+ SL G+FS I L ++L LR ++E
Sbjct: 121 SERAFLNNKIDLAQAEAIADLIESASDQAARSALRSLHGEFSAQIRDLREQLTELRCVVE 180
Query: 179 FSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKS 238
+ DF +E+ + I + L I+ L I + ++ AL+R G+ VVL G+PNVGKS
Sbjct: 181 ANIDFSDEDIDFI-ERGAVAERLKGIQSTLQSIHRSARQGALLREGIKVVLAGRPNVGKS 239
Query: 239 SLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEK 298
SL N L G + AIVT + GTTRD + + + I+ ++DTAG+ D + + +E+
Sbjct: 240 SLHNRLAGFEAAIVTDVPGTTRDLLREHVTIDGLPIHLSDTAGLHD-------SRDTIEQ 292
Query: 299 IGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
G+ RT EL ++D ++ V D + T+ ++ I+ P N+ ++NK+D SG
Sbjct: 293 EGMRRTREELTHADHVLLVADDQ-SGLTEVEQAILDELPDNVTYTLIFNKVDLSGASVGR 351
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ LSA G++LLR L + E + AR RH+ +L A +
Sbjct: 352 WEDPQGIALRLSALTGAGMDLLRQRLKECAGFDGEREGY-FSARRRHLEALQRAGAAVVV 410
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
A KI+ EK E E++AE+LR L+ I G+ +DLL IFS FCIGK
Sbjct: 411 ARKILR--EKGAE---EMLAEELRQAQNSLAEITGEYRADDLLGEIFSTFCIGK 459
>gi|56708343|ref|YP_170239.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110670814|ref|YP_667371.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
tularensis FSC198]
gi|254370965|ref|ZP_04986969.1| hypothetical protein FTBG_01711 [Francisella tularensis subsp.
tularensis FSC033]
gi|254875165|ref|ZP_05247875.1| tRNA modification GTPase trmE family protein [Francisella
tularensis subsp. tularensis MA00-2987]
gi|379717575|ref|YP_005305911.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Francisella
tularensis subsp. tularensis TIGB03]
gi|379726179|ref|YP_005318365.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Francisella
tularensis subsp. tularensis TI0902]
gi|385795045|ref|YP_005831451.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
tularensis NE061598]
gi|421755932|ref|ZP_16192866.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
tularensis 80700075]
gi|81597291|sp|Q5NFF3.1|MNME_FRATT RecName: Full=tRNA modification GTPase MnmE
gi|122970893|sp|Q14GV5.1|MNME_FRAT1 RecName: Full=tRNA modification GTPase MnmE
gi|56604835|emb|CAG45916.1| tRNA modification GTPase trmE family protein [Francisella
tularensis subsp. tularensis SCHU S4]
gi|110321147|emb|CAL09299.1| tRNA modification GTPase trmE family protein [Francisella
tularensis subsp. tularensis FSC198]
gi|151569207|gb|EDN34861.1| hypothetical protein FTBG_01711 [Francisella tularensis subsp.
tularensis FSC033]
gi|254841164|gb|EET19600.1| tRNA modification GTPase trmE family protein [Francisella
tularensis subsp. tularensis MA00-2987]
gi|282159580|gb|ADA78971.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
tularensis NE061598]
gi|377827628|gb|AFB80876.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Francisella
tularensis subsp. tularensis TI0902]
gi|377829252|gb|AFB79331.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Francisella
tularensis subsp. tularensis TIGB03]
gi|409086912|gb|EKM87024.1| tRNA modification GTPase TrmE [Francisella tularensis subsp.
tularensis 80700075]
Length = 450
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 213/478 (44%), Positives = 299/478 (62%), Gaps = 34/478 (7%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M TK++ I+ IATP G GG+GIIR+SG + +I E K TKKQLKPR+AT+ + + +N
Sbjct: 1 MYTKDT-IVAIATPQGNGGIGIIRISGIDALAIAE---KLTKKQLKPRYATFCNVY-NDN 55
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
IID G++I+FKAP SYTGEDV+E+ HG P IL++++ + L + G R+A GEFT+
Sbjct: 56 EIIDHGIIIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKAAL----NCGARMAKAGEFTE 111
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLNNKLDL Q EA+ D+INAS+E AAKSA SL G FSK IN LL+KLI LR +E S
Sbjct: 112 RAFLNNKLDLAQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYVEAS 171
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE L + L +I K +L + K+ ++ G+ ++L+G+PN GKSSL
Sbjct: 172 IDFPEEEINF-LEDQKIHSSLEEIYKVILAVKNSCKQGVILAEGITLILVGKPNAGKSSL 230
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVTSIAGTTRD + + IQIN I DTAG ++ + + +E G
Sbjct: 231 LNALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAG-------LRNSDDIIESEG 283
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFD--KKIIKNF----PMNIPVIYVWNKIDYSGH 354
I+R +++ +D +++V D + F K+II F P +I + YV NKID
Sbjct: 284 IKRAIKKIQEADQVLFVTDDYTNSQVKFSDIKEIIPEFYDQIPKDIDITYVHNKIDL--- 340
Query: 355 QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
K + + N+ +IY+SA IGI+ L+ +L+ + T E S Y ARERH+ ++N A
Sbjct: 341 LKEVPH-NHANHIYISAENNIGIDKLKEHILNKVGYTNQNE-SIYTARERHVTAINNAFE 398
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ A E+ N EL+AE+L E L+SI G+ +++DLL IFS FCIGK
Sbjct: 399 HIKLA------KEQLELGNGELLAEELLIVQEYLNSITGEFSSDDLLGEIFSSFCIGK 450
>gi|378821610|ref|ZP_09844490.1| tRNA modification GTPase TrmE [Sutterella parvirubra YIT 11816]
gi|378599555|gb|EHY32563.1| tRNA modification GTPase TrmE [Sutterella parvirubra YIT 11816]
Length = 456
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 176/474 (37%), Positives = 271/474 (57%), Gaps = 20/474 (4%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M + PI+ +AT GRGG+GI+R+S + + ++ +PR A +
Sbjct: 1 MHSDTDPIVAVATAAGRGGIGIVRVSAPPERAAGMLEALFPGRRAEPRHAHLWPVTDASG 60
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
N++D +V++F AP SYTGE V+E+ HGGP+++ M+ + LE + G+RLA PGEFTK
Sbjct: 61 NLLDHAIVLWFPAPASYTGESVLEIQAHGGPVLMRMITRTVLEKCAAFGVRLAEPGEFTK 120
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN ++DL Q EA+ DLI+A +ESA +A SL+G+FS L++ + D+ LR +E S
Sbjct: 121 RAFLNGRMDLAQAEAVSDLIDAVSESAVSAATRSLTGEFSNLVHAVADETDELRAYVEAS 180
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE E L + F + +++ I+ ++ +++R G+ V L+G PNVGKSSL
Sbjct: 181 LDFPEEEVE-NLAQGRIFERTEALLERIRTILATARRGSVLREGVTVALVGSPNVGKSSL 239
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G +VAIVT IAGTTRDKI + I +I DTAG I++ + VE G
Sbjct: 240 LNALAGEEVAIVTDIAGTTRDKIEHWVTIEGVPLRIVDTAG-------IRETSDTVEAKG 292
Query: 301 IERTWVELKNSDIIIYVQDA--RYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
IERT +D+++++ DA R + K+++ +P++ V NK D + +
Sbjct: 293 IERTLDAASKADLVLHLVDASGRIVDEENVLKRVMSVVRRGVPLVTVANKAD----EADP 348
Query: 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSC 418
+ I +SA G+ LR LL+ + + + ++ARERH+ L A +L
Sbjct: 349 SRTPLPDEILISARTGAGLENLRRVLLESAGMSASTDGL-FMARERHLDCLRRAQSHLEA 407
Query: 419 AIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
A+ + + +EL+AE+LR L I G++T +DLL IFS+FCIGK
Sbjct: 408 ALAM-----RTGFCMMELLAEELRLAGSALGEIRGETTPDDLLGMIFSKFCIGK 456
>gi|255600342|ref|XP_002537439.1| gtpase mss1/trme, putative [Ricinus communis]
gi|223516353|gb|EEF24944.1| gtpase mss1/trme, putative [Ricinus communis]
Length = 416
Score = 322 bits (824), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 172/420 (40%), Positives = 248/420 (59%), Gaps = 17/420 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I IAT PG GG+G++R+SG I + PR A Y F + +ID+G+
Sbjct: 13 IAAIATAPGAGGIGVVRVSGPLAADIATQILGHCPA---PRHAAYLPFLQADTTLIDRGI 69
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
IYF PHSYTGEDV+EL HGG ++ +LL+ C+E G R A GEFT+RA+LN+K
Sbjct: 70 AIYFPNPHSYTGEDVLELQAHGGTALMQILLARCIECGA----RHAQAGEFTQRAYLNDK 125
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EA+ DLINA+T AA+SA+ SLSG+FS+ I LL +L++LR +E DFPEE
Sbjct: 126 LDLAQAEAVADLINAATVEAARSAVRSLSGEFSQAIQTLLQQLVDLRMYVEACLDFPEEE 185
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ I + ++L + L I Q ++ L+R G+NVVLIGQPNVGKSSL N+L G
Sbjct: 186 IDFI-TQGRVLDKLQANQAALQHIFDQARQGVLLREGINVVLIGQPNVGKSSLLNALSGE 244
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+VAIVT IAGTTRD I IQI + DTAG +++ + VE++GI RTW
Sbjct: 245 EVAIVTPIAGTTRDTIKSVIQIEGVPLHVIDTAG-------LRETEDTVEQVGIARTWKA 297
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANI 367
++ + + + + D+++ +K I+ P + ++V NKID S I N ++
Sbjct: 298 IETAHVALLLVDSQHGIGAQ-EKAILHKLPPEVKKVWVHNKIDVSRETSRIEKHENEQHV 356
Query: 368 YLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSE 427
+LSA GI L+ TLL+++ Q ++AR RH+ +L E +L A+ ++ +E
Sbjct: 357 FLSAKTGDGIASLQKTLLEIV-GYQPGGEGVFMARARHLQALEEVEQHLDQAMLQMHAAE 415
>gi|337755040|ref|YP_004647551.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Francisella sp.
TX077308]
gi|336446645|gb|AEI35951.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Francisella sp.
TX077308]
Length = 450
Score = 322 bits (824), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 212/478 (44%), Positives = 296/478 (61%), Gaps = 34/478 (7%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M TK++ I+ +ATP G GG+GIIR+SG N SI E K TKK+LK R+AT+ + + N
Sbjct: 1 MYTKDT-IVAVATPQGNGGIGIIRISGVNALSIAE---KLTKKRLKSRYATFCNIY-NAN 55
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
I+D G+VI+F +P+SYTGEDV+E+ HG P IL++++ + LE G R+A GEFT+
Sbjct: 56 EIVDHGIVIFFNSPNSYTGEDVVEIQAHGNPFILNLIIKATLECGA----RMANAGEFTE 111
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLNNKLDL Q EA+ D+INAS+E AAKSA SL G FS+ IN LL+KLI LR +E S
Sbjct: 112 RAFLNNKLDLAQAEAVADIINASSEIAAKSAAKSLQGDFSREINSLLEKLIYLRMYVEAS 171
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE L L +I K +L + K+ A++ G+ ++L+G+PN GKSSL
Sbjct: 172 IDFPEEEINF-LEDQKVHTSLQEIYKTILDVKNSCKQGAILVEGVTLILVGKPNAGKSSL 230
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G + AIVTSIAGTTRD + + IQIN I DTAG ++ + + +E G
Sbjct: 231 LNALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAG-------LRSSDDVIESEG 283
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFD--KKIIKNF----PMNIPVIYVWNKIDYSGH 354
I+R +++ +D I++V D + F K II F P +I + YV NKID
Sbjct: 284 IKRAIKKIQEADQILFVTDDYTNSQVKFSDIKDIIPEFYNQIPKDIDITYVHNKIDLL-E 342
Query: 355 QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ +N+ N +IY+SA IGI+ L++ +L + T T S Y ARERH+ ++N A
Sbjct: 343 EAPMNHNN---HIYISAGNNIGIDKLKDHILAKVGYT-TQNESVYTARERHVTAINNAFE 398
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ A E+ N EL+AE+L E L+SI G+ +++DLL IFS FCIGK
Sbjct: 399 HIKLA------REQLELGNGELLAEELLIVQEHLNSITGEFSSDDLLGEIFSSFCIGK 450
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.138 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,125,963,805
Number of Sequences: 23463169
Number of extensions: 302189255
Number of successful extensions: 1103799
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 13190
Number of HSP's successfully gapped in prelim test: 7651
Number of HSP's that attempted gapping in prelim test: 1059972
Number of HSP's gapped (non-prelim): 26507
length of query: 472
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 326
effective length of database: 8,933,572,693
effective search space: 2912344697918
effective search space used: 2912344697918
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 79 (35.0 bits)