BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9409
(472 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 214 bits (545), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 149/469 (31%), Positives = 232/469 (49%), Gaps = 26/469 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ +ATPPG+G + I+RLSG + W IV+ + T+ ++ PR A + + +N +D+ +
Sbjct: 36 IVAVATPPGKGAIAILRLSGPDSWKIVQKHLR-TRSKIVPRKAIHG-WIHENGEDVDEVV 93
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
V+++K+P SYTGED++E+ HGGP+++ LL L+ G R+A PGEFTKRAFLN K
Sbjct: 94 VVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLDLFLKSGA----RMAEPGEFTKRAFLNGK 149
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSXXXXXXXXXXXXXRTLIEFSFDFPEEN 187
+DL EA+ DLI A +E++ K ++ +L G I D+P+E
Sbjct: 150 MDLTSAEAVRDLIEAKSETSLKLSLRNLKGGLRDFVDSLRRELIEVLAEIRVELDYPDEI 209
Query: 188 QELILNKNDFFNEXXXXXXXXXXXXXXXXXRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ N + L+ GL +V++G+PNVGKS+L N L+
Sbjct: 210 E---TNTGEVVTRLERIKEKLTEELKKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNE 266
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDXXXXXXXXXXXXXXXXXXRTWVE 307
D AIVT I GTTRD I++ I I LF+I DTAG+ RT E
Sbjct: 267 DRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGV------RSETNDLVERLGIERTLQE 320
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDY----SGHQXXXXXXXX 363
++ +DI+++V DA + D+KI++ N + V NK+D + +
Sbjct: 321 IEKADIVLFVLDASSPLDEE-DRKILERIK-NKRYLVVINKVDVVEKINEEEIKNKLGTD 378
Query: 364 XXXXXLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
+SA K G+ L ++ ++ S + R L +L AIK +
Sbjct: 379 RHMVKISALKGEGLEKLEESIYRETQEIFERGSDSLITNLRQKQLLENVKGHLEDAIKSL 438
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ +++ + DL L + G+S DLLD IFS FC+GK
Sbjct: 439 KEG-----MPVDMASIDLERALNLLDEVTGRSFREDLLDTIFSNFCVGK 482
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 213 bits (541), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 143/478 (29%), Positives = 240/478 (50%), Gaps = 30/478 (6%)
Query: 7 PIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLK-PRFATYSSFFCK---NNNI 62
PI IATP G G + I+R+SG + + + V +K K A Y++ F + +
Sbjct: 17 PIAAIATPVGVGALAIVRISGAGVLDLADRVFRKVHGSGKLAEAAGYTAHFGRLYDGEEM 76
Query: 63 IDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRA 122
+D+ + + F+AP S+T E ++E HGGP+++ +L L+ G RLA PGEFT+RA
Sbjct: 77 VDEVIALVFRAPRSFTAEQMVEFTCHGGPVVVGRVLRLMLDNG----CRLAEPGEFTRRA 132
Query: 123 FLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSXXXXXXXXXXXXXRTLIEFSFD 182
FLN ++DL+Q EAI ++I+A TESA ++A+ + G S LIE D
Sbjct: 133 FLNGRIDLLQAEAIGEMIHARTESAYRTAVSQMKGDLSVRLGGLREQLIRSCALIELELD 192
Query: 183 FPEENQELILNKNDFFNEXXXXXXXXXXXXXXXXXRALIRNGLNVVLIGQPNVGKSSLFN 242
F EE+ E ++++ + ++ G++ V+ G+PN GKS+L N
Sbjct: 193 FSEEDVEF-QSRDELTMQIETLRSEVNRLIDSYQHGRIVSEGVSTVIAGKPNAGKSTLLN 251
Query: 243 SLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDXXXXXXXXXXXXXXXXXX 302
+L+G + AIV+ + GTTRD I + +K +F++TDTAG+ +
Sbjct: 252 TLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLRE-------AGEEIEHEGIR 304
Query: 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPV---IYVWNKIDYSGHQXXXX 359
R+ +++ +D+I+Y+ D ++ D + I+ P + V NK+D + +
Sbjct: 305 RSRMKMAEADLILYLLDLGTER-LDDELTEIRELKAAHPAAKFLTVANKLDRAANADALI 363
Query: 360 XXXXXXXXX----LSASKRIGINLLRNTLLDLIEKTQTI-ESSPYLARERHIHSLNEANY 414
+SA GI+ L+ + DL++ + E+S + RH +L A+
Sbjct: 364 RAIADGTGTEVIGISALNGDGIDTLKQHMGDLVKNLDKLHEASVLVTSLRHYEALRNASD 423
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L A+++I E ELIA +LR + + I GK ++L+ IF +FCIGK
Sbjct: 424 ALQNALELIAH-----ESETELIAFELRAALDYVGQITGKVVNEEVLNTIFDKFCIGK 476
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 208 bits (530), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 148/477 (31%), Positives = 220/477 (46%), Gaps = 26/477 (5%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFF--CKN 59
+T I A P +G VGI+R+SG +I + + KQ+ + +
Sbjct: 6 ITGTIAAIATAIVPQQGSVGIVRVSGSQAIAIAQTLFDAPGKQVWESHRILYGYIRHPQT 65
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFT 119
I+D+ L++ KAP SYT EDV+E H HGG I + +L CLE G RLA PGEFT
Sbjct: 66 RQIVDEALLLLMKAPRSYTREDVVEFHCHGGIIAVQQVLQLCLESGA----RLAQPGEFT 121
Query: 120 KRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSXXXXXXXXXXXXXRTLIEF 179
RAFLN +LDL Q E+I DL+ A + AA++A+ L GK + IE
Sbjct: 122 LRAFLNGRLDLTQAESIADLVGARSPQAAQTALAGLQGKLAHPIRQLRANCLDILAEIEA 181
Query: 180 SFDFPEENQELILNKNDFFNEXXXXXXXXXXXXXXXXXRALIRNGLNVVLIGQPNVGKSS 239
DF E+ L + ++ L+R GL V ++G+PNVGKSS
Sbjct: 182 RIDFEEDLPPL--DDEAIISDIENIAAEISQLLATKDKGELLRTGLKVAIVGRPNVGKSS 239
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDXXXXXXXXXXXXXXX 299
L N+ SD AIVT + GTTRD + + + ++ DTAGI +
Sbjct: 240 LLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRE-------TSDQVEKI 292
Query: 300 XXXRTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQXXXX 359
R+ +D+++ DA T D++I + P+I V NKID Q
Sbjct: 293 GVERSRQAANTADLVLLTIDA-ATGWTTGDQEIYEQVKHR-PLILVMNKIDLVEKQLITS 350
Query: 360 XXXXXXXXXL---SASKRIGINLLRNTLLDLIEKTQTIESSPYLA-RERHIHSLNEANYY 415
+ +A+++ GI+ L +L++++ + + LA +R +L +A
Sbjct: 351 LEYPENITQIVHTAAAQKQGIDSLETAILEIVQTGKVQAADMDLAINQRQAAALTQAKMS 410
Query: 416 LSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L I Q + L+ DLR + L I G+ T +LD IFS+FCIGK
Sbjct: 411 LEQVQATITQ-----QLPLDFWTIDLRGAIQALGEITGEEVTESVLDRIFSRFCIGK 462
>pdb|1XZP|B Chain B, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
Length = 150
Score = 101 bits (252), Expect = 9e-22, Method: Composition-based stats.
Identities = 53/121 (43%), Positives = 83/121 (68%), Gaps = 6/121 (4%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ +ATPPG+G + I+RLSG + W IV+ + T+ ++ PR A + + +N +D+ +
Sbjct: 36 IVAVATPPGKGAIAILRLSGPDSWKIVQKHLR-TRSKIVPRKAIHG-WIHENGEDVDEVV 93
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
V+++K+P SYTGED++E+ HGGP+++ LL L+ G R+A PGEFTKRAFLN K
Sbjct: 94 VVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLDLFLKSGA----RMAEPGEFTKRAFLNGK 149
Query: 128 L 128
+
Sbjct: 150 M 150
>pdb|1XZQ|B Chain B, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 149
Score = 100 bits (249), Expect = 2e-21, Method: Composition-based stats.
Identities = 53/120 (44%), Positives = 82/120 (68%), Gaps = 6/120 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ +ATPPG+G + I+RLSG + W IV+ + T+ ++ PR A + + +N +D+ +
Sbjct: 36 IVAVATPPGKGAIAILRLSGPDSWKIVQKHLR-TRSKIVPRKAIHG-WIHENGEDVDEVV 93
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
V+++K+P SYTGED++E+ HGGP+++ LL L+ G R+A PGEFTKRAFLN K
Sbjct: 94 VVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLDLFLKSGA----RMAEPGEFTKRAFLNGK 149
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 95.1 bits (235), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 10/169 (5%)
Query: 219 ALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITD 278
+L+R G+ VV+ G+PN GKSSL N+L G + AIVT IAGTTRD + + I I+ I D
Sbjct: 2 SLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIID 61
Query: 279 TAGIPDXXXXXXXXXXXXXXXXXXRTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKN 335
TAG+ + R W E++ +D ++++ D D + + I
Sbjct: 62 TAGLRE-------ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIAR 114
Query: 336 FPMNIPVIYVWNKIDYSGHQXXXXXXXXXXXXXLSASKRIGINLLRNTL 384
P +P+ V NK D +G LSA G+++LRN L
Sbjct: 115 LPAKLPITVVRNKADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHL 163
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 10/165 (6%)
Query: 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI 282
+G+ VV+ G+PN GKSSL N+L G + AIVT IAGTTRD + + I I+ I DTAG+
Sbjct: 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGL 62
Query: 283 PDXXXXXXXXXXXXXXXXXXRTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMN 339
+ R W E++ +D ++++ D D + + I P
Sbjct: 63 RE-------ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAK 115
Query: 340 IPVIYVWNKIDYSGHQXXXXXXXXXXXXXLSASKRIGINLLRNTL 384
+P+ V NK D +G LSA G+++LRN L
Sbjct: 116 LPITVVRNKADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHL 160
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 79/165 (47%), Gaps = 10/165 (6%)
Query: 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI 282
+G VV+ G+PN GKSSL N+L G + AIVT IAGTTRD + + I I+ I DTAG+
Sbjct: 3 HGXKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGXPLHIIDTAGL 62
Query: 283 PDXXXXXXXXXXXXXXXXXXRTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMN 339
+ R W E++ +D +++ D D + + I P
Sbjct: 63 RE-------ASDEVERIGIERAWQEIEQADRVLFXVDGTTTDAVDPAEIWPEFIARLPAK 115
Query: 340 IPVIYVWNKIDYSGHQXXXXXXXXXXXXXLSASKRIGINLLRNTL 384
+P+ V NK D +G LSA G+++LRN L
Sbjct: 116 LPITVVRNKADITGETLGXSEVNGHALIRLSARTGEGVDVLRNHL 160
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 70/130 (53%), Gaps = 9/130 (6%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQI-NKFLFKITDTAGIPDX 285
V ++G+PNVGKS+L N+L+G+ V+I++ AGTTR ++ I N+ DT GI +
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 71
Query: 286 XXXXXXXXXXXXXXXXXRTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF--PMNIPVI 343
L+ +D+I+++ DA + D++I +NF P+N PVI
Sbjct: 72 KKSDVLGHSMVEIAKQS-----LEEADVILFMIDA-TEGWRPRDEEIYQNFIKPLNKPVI 125
Query: 344 YVWNKIDYSG 353
V NKID G
Sbjct: 126 VVINKIDKIG 135
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 70/130 (53%), Gaps = 9/130 (6%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQI-NKFLFKITDTAGIPDX 285
V ++G+PNVGKS+L N+L+G+ V+I++ AGTTR ++ I N+ DT GI +
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 72
Query: 286 XXXXXXXXXXXXXXXXXRTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF--PMNIPVI 343
L+ +D+I+++ DA + D++I +NF P+N PVI
Sbjct: 73 KKSDVLGHSMVEIAKQS-----LEEADVILFMIDA-TEGWRPRDEEIYQNFIKPLNKPVI 126
Query: 344 YVWNKIDYSG 353
V NKID G
Sbjct: 127 VVINKIDKIG 136
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 40/54 (74%)
Query: 229 LIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI 282
LIG+PNVGKSSL N+++G + IV+++AGTTRD + + N+ F I DTAG+
Sbjct: 200 LIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGM 253
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 9/125 (7%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDXX 286
V ++G+PNVGKS++FN + G ++IV G TRD+I + + + F + DT GI
Sbjct: 26 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGI---- 81
Query: 287 XXXXXXXXXXXXXXXXRTWVELKNSDIIIYVQDARYDKHTDFDKKIIK-NFPMNIPVIYV 345
+ + + +D+II++ + R + T D+++ K + PV+
Sbjct: 82 ---DIGDEPFLAQIRQQAEIAMDEADVIIFMVNGR-EGVTAADEEVAKILYRTKKPVVLA 137
Query: 346 WNKID 350
NK+D
Sbjct: 138 VNKLD 142
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 38/53 (71%)
Query: 229 LIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAG 281
LIG+PNVGKSSL N+ +G + IV+++AGTTRD + + N+ F I DTAG
Sbjct: 180 LIGRPNVGKSSLVNAXLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAG 232
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI 282
V ++G+PNVGKS++FN + G ++IV G TRD+I + + + F + DT GI
Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGI 61
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 42/62 (67%)
Query: 221 IRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTA 280
I + + V ++G+PNVGKS+LFN+++ + A+V+ I GTTRD + + I+ + DTA
Sbjct: 177 ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTA 236
Query: 281 GI 282
G+
Sbjct: 237 GL 238
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 37/58 (63%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPD 284
V+++G+PNVGKS+LFN LV AIV G TRD + T++ FK+ DT G+ D
Sbjct: 4 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFD 61
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 10/131 (7%)
Query: 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDX 285
VV++G+PNVGKSSLFN L+ A+V + G TRD ++ ++ F + DT G+
Sbjct: 3 KVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSG 62
Query: 286 XXXXXXXXXXXXXXXXXRTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPM-NIPVIY 344
L++++++++ D R + T D ++ + PVI
Sbjct: 63 DKWEKKIQEKVDRA--------LEDAEVVLFAVDGRAE-LTQADYEVAEYLRRKGKPVIL 113
Query: 345 VWNKIDYSGHQ 355
V K+D H+
Sbjct: 114 VATKVDDPKHE 124
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 66/136 (48%), Gaps = 23/136 (16%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF-LFKITDTAGIPDX 285
+V+ G+ NVGKSS N+LVG +V+IV+ AGTT D + K+++++ + DT G+ D
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDD- 95
Query: 286 XXXXXXXXXXXXXXXXXRTWVE-----LKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMN 339
R VE +D I V D+ T ++ ++ F M
Sbjct: 96 ------------VGELGRLRVEKARRVFYRADCGILVTDS---APTPYEDDVVNLFKEME 140
Query: 340 IPVIYVWNKIDYSGHQ 355
IP + V NKID G +
Sbjct: 141 IPFVVVVNKIDVLGEK 156
>pdb|3IBY|A Chain A, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|B Chain B, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|C Chain C, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|D Chain D, Structure Of Cytosolic Domain Of L. Pneumophila Feob
Length = 256
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 83/190 (43%), Gaps = 12/190 (6%)
Query: 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDX 285
+ +LIG PN GK++LFN+L ++ V + G T +K T + + L +ITD G+
Sbjct: 3 HALLIGNPNCGKTTLFNALTNANQR-VGNWPGVTVEKKTGEFLLGEHLIEITDLPGV--Y 59
Query: 286 XXXXXXXXXXXXXXXXXRTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYV 345
++ ++L+ II + ++H ++ F + PV+
Sbjct: 60 SLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQL---FELGKPVVVA 116
Query: 346 WNKIDYSGHQXXXXXXXXXXXXX------LSASKRIGINLLRNTLLDLIEKTQTIESSPY 399
N +D + H+ + A K IGI L+ +LL +K + ++ S
Sbjct: 117 LNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHCSQKIKPLKLSLS 176
Query: 400 LARERHIHSL 409
+A ++ ++ L
Sbjct: 177 VAAQQILNDL 186
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 9/130 (6%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDXX 286
V ++G+PNVGKS+L N+L+G VA ++ TTR ++ + + DT G+
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGL---- 65
Query: 287 XXXXXXXXXXXXXXXXRTWVELKNSDIIIYVQDARYD--KHTDFDKKIIKNFPMNIPVIY 344
+ L + + +++V D R+ + + +K +P++
Sbjct: 66 ---HKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILL 122
Query: 345 VWNKIDYSGH 354
V NK+D + +
Sbjct: 123 VGNKLDAAKY 132
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI 282
+ LIG PNVGKS++FN+L G +V I + G T +K + N FK+ D G+
Sbjct: 10 IALIGNPNVGKSTIFNALTGENVYI-GNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 64
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI 282
+ LIG PNVGKS++FN+L G +V I + G T +K + N FK+ D G+
Sbjct: 6 IALIGNPNVGKSTIFNALTGENVYI-GNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 60
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI 282
+ LIG PNVGKS++FN+L G +V I + G T +K + N FK+ D G+
Sbjct: 6 IALIGNPNVGKSTIFNALTGENVYI-GNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 60
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI 282
+ LIG PNVGKS++FN+L G +V I + G T +K + N FK+ D G+
Sbjct: 7 IALIGNPNVGKSTIFNALTGENVYI-GNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 61
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI 282
+ ++G+PNVGKS+L N L+G ++I + A TTR +I + DT G+
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGL 63
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI 282
+ ++G+PNVGKS+L N L+G ++I + A TTR +I + DT G+
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGL 66
>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PQC|B Chain B, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PR1|A Chain A, Crystal Structure Of Apo Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb
Length = 195
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTR 260
V +G+ NVGKSSL N+L +A V+ G TR
Sbjct: 26 VAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTR 59
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 6/111 (5%)
Query: 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI 282
N + V+++G+ VGKSS NSL+G V V+ + + + F I DT G+
Sbjct: 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGL 94
Query: 283 PDXXXXXXXXXXXXXXXXXXRTWVELKNSDIIIYVQDARYDKHTDFDKKII 333
+ RT D+++YV + + DK+++
Sbjct: 95 VEAGYVNHQALELIKGFLVNRT------IDVLLYVDRLDVYRVDELDKQVV 139
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 6/111 (5%)
Query: 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI 282
N + V+++G+ VGKSS NSL+G V V+ + + + F I DT G+
Sbjct: 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGL 94
Query: 283 PDXXXXXXXXXXXXXXXXXXRTWVELKNSDIIIYVQDARYDKHTDFDKKII 333
+ RT D+++YV + + DK+++
Sbjct: 95 VEAGYVNHQALELIKGFLVNRT------IDVLLYVDRLDVYRVDELDKQVV 139
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPD 284
VV+ G PNVGKS+L +L + I S TTR + F ++I DT G+ D
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEI-ASYPFTTRGINVGQFEDGYFRYQIIDTPGLLD 226
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI 282
N + V+++G+ VGKSS NSL+G V V+ + + + F I DT G+
Sbjct: 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGL 94
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI 282
N + V+++G+ VGKSS NSL+G V V+ + + + F I DT G+
Sbjct: 34 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGL 93
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI 282
V L+G PNVGK+++FN+L G V + G T +K ++ + F + D GI
Sbjct: 5 TVALVGNPNVGKTTIFNALTGLRQH-VGNWPGVTVEKKEGIMEYREKEFLVVDLPGI 60
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAG 281
+ V L G PNVGK+SLFN+L G+ V + G T +K + + D G
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPG 61
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAG 281
+ V L G PNVGK+SLFN+L G+ V + G T +K + + D G
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPG 61
>pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain
pdb|3SOP|B Chain B, Crystal Structure Of Human Septin 3 Gtpase Domain
Length = 270
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN-----------KFL 273
N++++GQ +GKS+L N+L S V+ S + +KI KT++I K
Sbjct: 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKAS-SWNREEKIPKTVEIKAIGHVIEEGGVKMK 61
Query: 274 FKITDTAGIPD 284
+ DT G D
Sbjct: 62 LTVIDTPGFGD 72
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAG 281
+ V L G PNVGK+SLFN+L G+ V + G T +K + + D G
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPG 61
>pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp
pdb|2QNR|B Chain B, Human Septin 2 In Complex With Gdp
Length = 301
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 14/80 (17%)
Query: 218 RALIRNGLNVVL--IGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN----- 270
R ++ G L +G+ +GKS+L NSL +D+ I+G +KI +T+QI
Sbjct: 10 RKSVKKGFEFTLXVVGESGLGKSTLINSLFLTDLYPERVISGAA-EKIERTVQIEASTVE 68
Query: 271 ------KFLFKITDTAGIPD 284
K + DT G D
Sbjct: 69 IEERGVKLRLTVVDTPGYGD 88
>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
Length = 361
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 14/80 (17%)
Query: 218 RALIRNGLNVVL--IGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN----- 270
R ++ G L +G+ +GKS+L NSL +D+ I G +KI +T+QI
Sbjct: 29 RKSVKKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAA-EKIERTVQIEASTVE 87
Query: 271 ------KFLFKITDTAGIPD 284
K + DT G D
Sbjct: 88 IEERGVKLRLTVVDTPGYGD 107
>pdb|2QA5|A Chain A, Crystal Structure Of Sept2 G-Domain
pdb|2QA5|B Chain B, Crystal Structure Of Sept2 G-Domain
Length = 315
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 14/80 (17%)
Query: 218 RALIRNGLNVVL--IGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN----- 270
R ++ G L +G+ +GKS+L NSL +D+ I G +KI +T+QI
Sbjct: 29 RKSVKKGFEFTLXVVGESGLGKSTLINSLFLTDLYPERVIPGAA-EKIERTVQIEASTVE 87
Query: 271 ------KFLFKITDTAGIPD 284
K + DT G D
Sbjct: 88 IEERGVKLRLTVVDTPGYGD 107
>pdb|3I8S|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8X|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I92|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
Length = 274
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGS 247
L + LIG PN GK++LFN L GS
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGS 26
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI 282
+ ++IG PNVGKS+L N L ++A G T + + +++ K L ++ DT GI
Sbjct: 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQ--QWVKVGKEL-ELLDTPGI 175
>pdb|3HYT|A Chain A, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|B Chain B, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|C Chain C, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
Length = 270
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGS 247
L + LIG PN GK++LFN L GS
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGS 26
>pdb|3HYR|A Chain A, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|B Chain B, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|C Chain C, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
Length = 270
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGS 247
L + LIG PN GK++LFN L GS
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGS 26
>pdb|2WIA|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIA|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIB|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIB|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIC|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gmppnp Binding
State
Length = 267
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGS 247
L V LIG PN GK++LFN L G+
Sbjct: 4 LTVGLIGNPNSGKTTLFNQLTGA 26
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S. Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI 282
+ LIG PN GK+SLFN + G + V + G T ++ + ++ NK L +I D GI
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERKSGLVKKNKDL-EIQDLPGI 59
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
Length = 272
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI 282
+ LIG PN GK+SLFN + G + V + G T ++ + ++ NK L +I D GI
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERKSGLVKKNKDL-EIQDLPGI 59
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
Length = 272
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI 282
+ LIG PN GK+SLFN + G + V + G T ++ + ++ NK L +I D GI
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERKSGLVKKNKDL-EIQDLPGI 59
>pdb|3FTQ|A Chain A, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|B Chain B, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|C Chain C, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|D Chain D, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
Length = 274
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 12/71 (16%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN-----------KFL 273
++++G+ +GKS+L NSL +D+ I G +KI +T+QI K
Sbjct: 6 FTLMVVGESGLGKSTLINSLFLTDLYPERIIPGAA-EKIERTVQIEASTVEIEERGVKLR 64
Query: 274 FKITDTAGIPD 284
+ DT G D
Sbjct: 65 LTVVDTPGYGD 75
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFL--FKITDTAGI 282
V+++G PN GKS++ N L G + V + G ITK IQ KI DT GI
Sbjct: 101 RVLIVGVPNTGKSTIINKLKGKRASSVGAQPG-----ITKGIQWFSLENGVKILDTPGI 154
>pdb|3EC1|A Chain A, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
pdb|3EC1|B Chain B, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
Length = 369
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 222 RNGLNVVLIGQPNVGKSSLFNSLV----GSDVAIVTS-IAGTTRDKITKTIQINKFLFKI 276
R G +V ++G NVGKS+ N ++ G I TS GTT D I ++ L+
Sbjct: 160 REGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLY-- 217
Query: 277 TDTAGI 282
DT GI
Sbjct: 218 -DTPGI 222
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI 282
N L ++++G+ VGKSS NS++G V ++ + + F I DT G+
Sbjct: 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGL 97
>pdb|3B1Z|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35s Mutant
Without Nucleotide
Length = 272
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI 282
+ LIG PN GK+SLFN + G + V + G + ++ + ++ NK L +I D GI
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQR-VGNWPGVSVERKSGLVKKNKDL-EIQDLPGI 59
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 225 LNVVLIGQPNVGKSSLFNSL 244
L V ++G PNVGKS+LFN+L
Sbjct: 2 LAVGIVGLPNVGKSTLFNAL 21
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 225 LNVVLIGQPNVGKSSLFNSL 244
L V ++G PNVGKS+LFN+L
Sbjct: 2 LAVGIVGLPNVGKSTLFNAL 21
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 19/96 (19%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPD 284
+ ++L+G N GK++L L D++ +T G K++Q F + D G+
Sbjct: 5 VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFN----IKSVQSQGFKLNVWDIGGL-- 58
Query: 285 XXXXXXXXXXXXXXXXXXRTWVELKNSDIIIYVQDA 320
R++ E N+DI+IYV D+
Sbjct: 59 -----------RKIRPYWRSYFE--NTDILIYVIDS 81
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 19/96 (19%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPD 284
+ ++L+G N GK++L L D++ +T G K++Q F + D G
Sbjct: 18 VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFN----IKSVQSQGFKLNVWDIGG--- 70
Query: 285 XXXXXXXXXXXXXXXXXXRTWVELKNSDIIIYVQDA 320
R++ E N+DI+IYV D+
Sbjct: 71 ----------QRKIRPYWRSYFE--NTDILIYVIDS 94
>pdb|3B1Y|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35a Mutant
Bound To Gdp
Length = 272
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI 282
+ LIG PN GK+SLFN + G + V + G ++ + ++ NK L +I D GI
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQR-VGNWPGVAVERKSGLVKKNKDL-EIQDLPGI 59
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 19/96 (19%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPD 284
+ ++L+G N GK++L L D++ +T G K++Q F + D G
Sbjct: 17 VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFN----IKSVQSQGFKLNVWDIGG--- 69
Query: 285 XXXXXXXXXXXXXXXXXXRTWVELKNSDIIIYVQDA 320
R++ E N+DI+IYV D+
Sbjct: 70 ----------QRKIRPYWRSYFE--NTDILIYVIDS 93
>pdb|1JAL|A Chain A, Ychf Protein (Hi0393)
pdb|1JAL|B Chain B, Ychf Protein (Hi0393)
Length = 363
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 224 GLNVVLIGQPNVGKSSLFNSL 244
G ++G PNVGKS+LFN+L
Sbjct: 2 GFKCGIVGLPNVGKSTLFNAL 22
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 222 RNGL-NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTA 280
RN + ++ ++G N GK+SLFNSL G + T + T K I IN + DT
Sbjct: 176 RNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPK-RYAIPINNRKIMLVDTV 234
Query: 281 G 281
G
Sbjct: 235 G 235
>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4
Length = 239
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFK-----ITDT 279
L +VL+G+ GKS+ NS++G V +GT ITK + +K + DT
Sbjct: 30 LRIVLVGKTGAGKSATGNSILGRKVF----HSGTAAKSITKKCEKRSSSWKETELVVVDT 85
Query: 280 AGIPD 284
GI D
Sbjct: 86 PGIFD 90
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI 282
N L +++ G+ VGKSS NS++G V ++ + + F I DT G+
Sbjct: 38 NSLTILVXGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVXVSRSRAGFTLNIIDTPGL 97
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 19/96 (19%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPD 284
+ ++L+G N GK++L L D++ +T G K++Q F + D G
Sbjct: 5 VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFN----IKSVQSQGFKLNVWDIGG--- 57
Query: 285 XXXXXXXXXXXXXXXXXXRTWVELKNSDIIIYVQDA 320
R++ E N+DI+IYV D+
Sbjct: 58 ----------QRKIRPYWRSYFE--NTDILIYVIDS 81
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 15/80 (18%)
Query: 218 RALIRNGLNVVL--IGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN----- 270
R ++ G L +G+ +GKS+L NSL +D+ + R I KT+Q+
Sbjct: 23 RKSVKRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHR--IKKTVQVEQSKVL 80
Query: 271 ------KFLFKITDTAGIPD 284
+ L I DT G D
Sbjct: 81 IKEGGVQLLLTIVDTPGFGD 100
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 23/140 (16%)
Query: 222 RNGL-NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTA 280
RN + ++ ++G N GK+SLFNSL G + T + T K I IN + DT
Sbjct: 176 RNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPK-RYAIPINNRKIMLVDTV 234
Query: 281 ----GIPDXXXXXXXXXXXXXXXXXXRTWVELKNSDIIIYVQDARYDKHTDFDK-----K 331
GIP T E K SD +I V D+ + ++ + +
Sbjct: 235 SFIRGIPPQIVDAFFV-----------TLSEAKYSDALILVIDSTFSENLLIETLQSSFE 283
Query: 332 IIKNFPMN-IPVIYVWNKID 350
I++ ++ P++ NKID
Sbjct: 284 ILREIGVSGKPILVTLNKID 303
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 23/140 (16%)
Query: 222 RNGL-NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTA 280
RN + ++ ++G N GK+SLFNSL G + T + T K I IN + DT
Sbjct: 176 RNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPK-RYAIPINNRKIMLVDTV 234
Query: 281 ----GIPDXXXXXXXXXXXXXXXXXXRTWVELKNSDIIIYVQDARYDKHTDFDK-----K 331
GIP T E K SD +I V D+ + ++ + +
Sbjct: 235 PFIRGIPPQIVDAFFV-----------TLSEAKYSDALILVIDSTFSENLLIETLQSSFE 283
Query: 332 IIKNFPMN-IPVIYVWNKID 350
I++ ++ P++ NKID
Sbjct: 284 ILREIGVSGKPILVTLNKID 303
>pdb|3TAH|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
pdb|3TAH|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
Length = 272
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI 282
+ LIG P GK+SLFN + G + V + G T ++ + ++ NK L +I D GI
Sbjct: 6 IALIGNPASGKTSLFNLITGHNQR-VGNWPGVTVERKSGLVKKNKDL-EIQDLPGI 59
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTI--QINKFLFKITDTAGIPD 284
++L G PNVGKSS N + ++V V S + TT++ ++NK ++I DT G+ D
Sbjct: 32 IILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKLNK--YQIIDTPGLLD 88
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVA 250
L + ++G PNVGKS+ FN L S +
Sbjct: 23 LKIGIVGLPNVGKSTFFNVLTNSQAS 48
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 13/71 (18%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN-----------KFL 273
++++G+ +GKS+L NSL +D+ + R I KT+Q+ + L
Sbjct: 4 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHR--IKKTVQVEQSKVLIKEGGVQLL 61
Query: 274 FKITDTAGIPD 284
I DT G D
Sbjct: 62 LTIVDTPGFGD 72
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 13/71 (18%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN-----------KFL 273
++++G+ +GKS+L NSL +D+ + R I KT+Q+ + L
Sbjct: 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHR--IKKTVQVEQSKVLIKEGGVQLL 66
Query: 274 FKITDTAGIPD 284
I DT G D
Sbjct: 67 LTIVDTPGFGD 77
>pdb|4A2I|V Chain V, Cryo-Electron Microscopy Structure Of The 30s Subunit In
Complex With The Yjeq Biogenesis Factor
Length = 277
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 228 VLIGQPNVGKSSLFNSLVGSDVAIVTSIAG 257
+ GQ VGKSSL N+L+G I+T+ A
Sbjct: 164 IFAGQSGVGKSSLLNALLGLQNEILTNTAA 193
>pdb|2GTQ|A Chain A, Crystal Structure Of Aminopeptidase N From Human Pathogen
Neisseria Meningitidis
Length = 867
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 445 HEKLSSIIGKSTTNDLLDNIFSQFCIG 471
HEKL + + K ++DLLDN F +G
Sbjct: 587 HEKLLAAVEKVISDDLLDNAFKALLLG 613
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,899,360
Number of Sequences: 62578
Number of extensions: 434302
Number of successful extensions: 1233
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1149
Number of HSP's gapped (non-prelim): 81
length of query: 472
length of database: 14,973,337
effective HSP length: 102
effective length of query: 370
effective length of database: 8,590,381
effective search space: 3178440970
effective search space used: 3178440970
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)