BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9409
(472 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A6T4D6|MNME_JANMA tRNA modification GTPase MnmE OS=Janthinobacterium sp. (strain
Marseille) GN=mnmE PE=3 SV=1
Length = 465
Score = 513 bits (1321), Expect = e-144, Method: Compositional matrix adjust.
Identities = 255/468 (54%), Positives = 333/468 (71%), Gaps = 7/468 (1%)
Query: 5 NSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIID 64
+SPI IAT PGRGG+G++R+SGKN+ SI+E VC +L+PR AT+++F + ++ID
Sbjct: 5 SSPIAAIATAPGRGGIGVVRVSGKNISSIIEAVCATKGAELQPRHATFTNFVNADGSVID 64
Query: 65 KGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFL 124
+GL IYFKAPHSYTGEDV+EL GHGGPI+L MLL+ CLE G IGLR+A PGEFT RAFL
Sbjct: 65 QGLAIYFKAPHSYTGEDVLELQGHGGPIVLQMLLTRCLEAGTDIGLRMAQPGEFTHRAFL 124
Query: 125 NNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFP 184
N+KLDL Q E +IDLI ASTE+AAKSA SLSG FSK I L+DK+ NLR L+E + DFP
Sbjct: 125 NDKLDLAQAEGVIDLIEASTEAAAKSASQSLSGAFSKTIQDLVDKITNLRMLVEATLDFP 184
Query: 185 EENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSL 244
EE + L K+D +L I++ L + Q + AL+R+GLN+VL GQPNVGKSSL N+L
Sbjct: 185 EEEIDF-LEKSDARGQLNGIREALQAVFTQASQGALLRDGLNIVLAGQPNVGKSSLLNAL 243
Query: 245 VGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304
GSDVAIVT+IAGTTRDK+ +TIQI + DTAGI D + +EVE+IGIERT
Sbjct: 244 AGSDVAIVTAIAGTTRDKVIETIQIEGIPVNVIDTAGIRDASDA----TDEVERIGIERT 299
Query: 305 WVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
W +K +D+II++ DA T D++I++ FP NIPV+ +WNKID SGH+ I+ +
Sbjct: 300 WAAVKTADVIIHMLDANRGP-TRADEQIVERFPENIPVMRIWNKIDLSGHRPAIDRMPDS 358
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
+IY+SA+ G++LLR LL LI QT ES YLARERH+ +L A+ +L A +
Sbjct: 359 THIYVSATDLQGMDLLRGELLRLIGWQQTGESL-YLARERHLVALKSAHDHLEMAAQHAA 417
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + L+L AE+LR E+LSSI G+ T++DLL IFS+FCIGK
Sbjct: 418 HDSEATDPALDLFAEELRLAQERLSSITGEFTSDDLLGVIFSRFCIGK 465
>sp|A4GAN2|MNME_HERAR tRNA modification GTPase MnmE OS=Herminiimonas arsenicoxydans
GN=mnmE PE=3 SV=1
Length = 466
Score = 506 bits (1303), Expect = e-142, Method: Compositional matrix adjust.
Identities = 252/473 (53%), Positives = 329/473 (69%), Gaps = 8/473 (1%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTK-KQLKPRFATYSSFFCKN 59
M +SPI IAT PGRGG+G++R+SGK+L S++ VC K L+ R ATY F +
Sbjct: 1 MTFDSSPIAAIATAPGRGGIGVVRISGKDLSSVMRAVCGADKGSSLQARHATYLDFVNSD 60
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFT 119
++ID+GL IYFKAPHSYTGEDV+EL GHGGP++L MLL+ CLE G IGLR+A PGEFT
Sbjct: 61 GSVIDQGLAIYFKAPHSYTGEDVLELQGHGGPVVLQMLLTRCLEAGADIGLRMAEPGEFT 120
Query: 120 KRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEF 179
RAFLN+KLDL Q E +IDLI ASTE+AAKSA SLSG FSK I L+DK+ NLR L+E
Sbjct: 121 HRAFLNDKLDLAQAEGVIDLIEASTEAAAKSATQSLSGAFSKTIQELVDKITNLRMLVEA 180
Query: 180 SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239
+ DFPEE + L K+D +L I++ L ++ Q + AL+R+GLN+VL GQPNVGKSS
Sbjct: 181 TLDFPEEEIDF-LEKSDARGQLTNIREALQRVFSQAAQGALLRDGLNIVLAGQPNVGKSS 239
Query: 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299
L N+L GSDVAIVT IAGTTRDK+ +TIQI + DTAGI D +EVE+I
Sbjct: 240 LLNALAGSDVAIVTPIAGTTRDKVIETIQIEGIPVNVIDTAGIRD----AADAGDEVERI 295
Query: 300 GIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNIN 359
GIERTW ++ +D+I+++ DA T D++I + FP N+PV+ VWNKID SGH+ I+
Sbjct: 296 GIERTWAAVQTADVIVHMLDASRGP-TRADEQITERFPANVPVMRVWNKIDLSGHRPAID 354
Query: 360 YKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCA 419
+ +IYLSA+ +G++LLR LL L+ QT ES YLARERH+ +L A+ +L A
Sbjct: 355 RMPDATHIYLSATGLLGMDLLRTELLHLVGWQQTGESL-YLARERHLVALKSAHSHLEMA 413
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ + + L+L AE+LR E+LSSI G+ T++DLL IFS+FCIGK
Sbjct: 414 AQHAAHDNEATDPALDLFAEELRLAQERLSSITGEFTSDDLLGVIFSRFCIGK 466
>sp|A0KBN1|MNME_BURCH tRNA modification GTPase MnmE OS=Burkholderia cenocepacia (strain
HI2424) GN=mnmE PE=3 SV=1
Length = 464
Score = 429 bits (1104), Expect = e-119, Method: Compositional matrix adjust.
Identities = 216/480 (45%), Positives = 315/480 (65%), Gaps = 25/480 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-GKN----LWSIVEIVCKKTKKQLKPRFATYSSF 55
+ T + PI+ IAT GRGG+G++R+S G+ +++ +C + +L PR A+Y F
Sbjct: 2 LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQ---KLAPRHASYVPF 58
Query: 56 FCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMP 115
+ +D+G+ +YF APHSYTGE V+EL GHGGPI++ +LL CL+ G+ GLRLA P
Sbjct: 59 LDAHGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEP 118
Query: 116 GEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRT 175
GEFT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L+D +I LR
Sbjct: 119 GEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVITLRM 178
Query: 176 LIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235
L+E + DFPEE + L D +L KI+ +L ++ ++ AL+R GL+VVL GQPNV
Sbjct: 179 LVEATLDFPEEEIDF-LEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNV 237
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKSSL N+L G+++AIVT IAGTTRDK+ +TIQ+ I DTAG +++ +E
Sbjct: 238 GKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAG-------LRETEDE 290
Query: 296 VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355
VE+IGI RTW E++ +D+++++ D+R D D+ I FP +PV+ V NK D +G
Sbjct: 291 VERIGIARTWSEIERADVVLHLLDSRTGMTAD-DETIAARFPAGVPVVRVLNKTDLTGVP 349
Query: 356 KNINY---KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEA 412
+ + + ++ ++LSA + GI++LR LL I Q YLARERH+ +L A
Sbjct: 350 ACVEHPAAEGDLTEVHLSAKRGDGIDMLRAELLR-IAGWQAGAEGVYLARERHLIALRAA 408
Query: 413 NYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A N +E+ ++L+L AE+LR E+L++I G+ T++DLL IFS+FCIGK
Sbjct: 409 QEHLAQA---ANHAEQR-AQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464
>sp|Q1BSF9|MNME_BURCA tRNA modification GTPase MnmE OS=Burkholderia cenocepacia (strain
AU 1054) GN=mnmE PE=3 SV=1
Length = 464
Score = 429 bits (1104), Expect = e-119, Method: Compositional matrix adjust.
Identities = 216/480 (45%), Positives = 315/480 (65%), Gaps = 25/480 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-GKN----LWSIVEIVCKKTKKQLKPRFATYSSF 55
+ T + PI+ IAT GRGG+G++R+S G+ +++ +C + +L PR A+Y F
Sbjct: 2 LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQ---KLAPRHASYVPF 58
Query: 56 FCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMP 115
+ +D+G+ +YF APHSYTGE V+EL GHGGPI++ +LL CL+ G+ GLRLA P
Sbjct: 59 LDAHGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEP 118
Query: 116 GEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRT 175
GEFT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L+D +I LR
Sbjct: 119 GEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVITLRM 178
Query: 176 LIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235
L+E + DFPEE + L D +L KI+ +L ++ ++ AL+R GL+VVL GQPNV
Sbjct: 179 LVEATLDFPEEEIDF-LEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNV 237
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKSSL N+L G+++AIVT IAGTTRDK+ +TIQ+ I DTAG +++ +E
Sbjct: 238 GKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAG-------LRETEDE 290
Query: 296 VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355
VE+IGI RTW E++ +D+++++ D+R D D+ I FP +PV+ V NK D +G
Sbjct: 291 VERIGIARTWSEIERADVVLHLLDSRTGMTAD-DETIAARFPAGVPVVRVLNKTDLTGVP 349
Query: 356 KNINY---KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEA 412
+ + + ++ ++LSA + GI++LR LL I Q YLARERH+ +L A
Sbjct: 350 ACVEHPAAEGDLTEVHLSAKRGDGIDMLRAELLR-IAGWQAGAEGVYLARERHLIALRAA 408
Query: 413 NYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A N +E+ ++L+L AE+LR E+L++I G+ T++DLL IFS+FCIGK
Sbjct: 409 QEHLAQA---ANHAEQR-AQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464
>sp|B1K0Y2|MNME_BURCC tRNA modification GTPase MnmE OS=Burkholderia cenocepacia (strain
MC0-3) GN=mnmE PE=3 SV=1
Length = 464
Score = 428 bits (1100), Expect = e-119, Method: Compositional matrix adjust.
Identities = 215/480 (44%), Positives = 312/480 (65%), Gaps = 25/480 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-GKN----LWSIVEIVCKKTKKQLKPRFATYSSF 55
+ T + PI+ IAT GRGG+G++R+S G+ +++ +C + +L PR A+Y F
Sbjct: 2 LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQ---KLAPRHASYVPF 58
Query: 56 FCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMP 115
+ +D+G+ +YF APHSYTGE V+EL GHGGPI++ +LL CL+ G+ GLRLA P
Sbjct: 59 LDAHGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEP 118
Query: 116 GEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRT 175
GEFT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L+D +I LR
Sbjct: 119 GEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVITLRM 178
Query: 176 LIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235
L+E + DFPEE + L D +L KI+ +L ++ ++ AL+R GL+VVL GQPNV
Sbjct: 179 LVEATLDFPEEEIDF-LEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNV 237
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKSSL N+L G+++AIVT IAGTTRDK+ +TIQ+ I DTAG +++ +E
Sbjct: 238 GKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAG-------LRETEDE 290
Query: 296 VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355
VE+IGI RTW E++ +D+++++ D+R D D+ I FP +PV+ V NK D +G
Sbjct: 291 VERIGIARTWSEIERADVVLHLLDSRTGMTPD-DETIAARFPAGVPVVRVLNKTDLTGVP 349
Query: 356 KNINY---KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEA 412
+ + + ++ ++LSA + GI++LR LL I Q YLARERH+ +L A
Sbjct: 350 ACVEHPAAEGDLTEVHLSAKRGDGIDMLRAELLR-IAGWQAGAEGVYLARERHLIALRAA 408
Query: 413 NYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A Q ++L+L AE+LR E+L++I G+ T++DLL IFS+FCIGK
Sbjct: 409 QEHLAQAADHAEQR----AQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464
>sp|Q39BQ4|MNME_BURS3 tRNA modification GTPase MnmE OS=Burkholderia sp. (strain 383)
GN=mnmE PE=3 SV=2
Length = 464
Score = 427 bits (1099), Expect = e-119, Method: Compositional matrix adjust.
Identities = 215/480 (44%), Positives = 313/480 (65%), Gaps = 25/480 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-GKN----LWSIVEIVCKKTKKQLKPRFATYSSF 55
+ T + PI+ IAT GRGG+G++R+S G+ +++ +C + +L PR A+Y F
Sbjct: 2 LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQ---KLAPRHASYVPF 58
Query: 56 FCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMP 115
++ +D+G+ +YF APHSYTGE V+EL GHGGPI++ +LL CL+ G+ GLRLA P
Sbjct: 59 LDEHGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEP 118
Query: 116 GEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRT 175
GEFT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L+D +I LR
Sbjct: 119 GEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVITLRM 178
Query: 176 LIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235
L+E + DFPEE + L D +L KI+ +L ++ ++ AL+R GL+VVL GQPNV
Sbjct: 179 LVEATLDFPEEEIDF-LEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNV 237
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKSSL N+L G+++AIVT IAGTTRDK+ +TIQ+ I DTAG +++ +E
Sbjct: 238 GKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAG-------LRETEDE 290
Query: 296 VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355
VE+IGI RTW E++ +D+++++ D+R D D+ I FP +PV+ V NK D +G
Sbjct: 291 VERIGIARTWSEIERADVVLHLLDSRNGMTAD-DETIAARFPGGVPVVRVLNKTDLTGVA 349
Query: 356 KNINY---KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEA 412
+ + + ++ ++LSA + GI++LR LL I Q YLARERH+ +L A
Sbjct: 350 ACVEHPAAEGDLTEVHLSAKRGDGIDMLRAELLR-IAGWQAGAEGVYLARERHLIALRAA 408
Query: 413 NYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A Q ++L+L AE+LR E+L++I G+ T++DLL IFS+FCIGK
Sbjct: 409 QEHLAQAADHAEQR----AQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464
>sp|Q1LH94|MNME_RALME tRNA modification GTPase MnmE OS=Ralstonia metallidurans (strain
CH34 / ATCC 43123 / DSM 2839) GN=mnmE PE=3 SV=1
Length = 475
Score = 427 bits (1098), Expect = e-119, Method: Compositional matrix adjust.
Identities = 227/490 (46%), Positives = 323/490 (65%), Gaps = 33/490 (6%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M PI IAT PGRGG+G++R+SG ++ +++ VC + L+PR ATY F
Sbjct: 1 MTVSQIPIAAIATAPGRGGIGVVRVSGPDVGAVMRAVCGRA---LQPRHATYLPFLDARG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
N+ID GL +YF AP+SYTGE+V+EL GHGGP+++ MLLS CLE GK IGLR+A PGEFT+
Sbjct: 58 NVIDHGLALYFPAPNSYTGEEVLELQGHGGPVVMQMLLSRCLEAGKDIGLRVAEPGEFTR 117
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EA+ DLI ASTE+AA+SA S+ G+FSK I+ L++K+I+LR L+E +
Sbjct: 118 RAFLNDKLDLAQAEAVADLIEASTEAAARSAARSMEGEFSKAIHALVEKVIHLRMLVEAT 177
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + L ++ +L +I++ L +++Q ++ +L+R GL+VVL GQPNVGKSSL
Sbjct: 178 LDFPEEEIDF-LEASNARGQLTRIREDLAGVLKQARQGSLLREGLSVVLAGQPNVGKSSL 236
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L GSD+AIVT IAGTTRD++ +TIQI+ I DTAG+ D +EVE+IG
Sbjct: 237 LNALAGSDLAIVTPIAGTTRDRVRETIQIDGIPLHIIDTAGLRD------DAADEVERIG 290
Query: 301 IERTWVELKNSDIIIYVQDAR-YDKH----TD--FDKKIIKNFPMNIPVIYVWNKID--- 350
IERTW ++++DI++++ DA Y +H TD D ++ P P++ V NKID
Sbjct: 291 IERTWEAIRHADIVLHLIDAADYIEHGISETDDHIDDRLSGQLPPGSPIVRVINKIDLAP 350
Query: 351 ------YSGHQKNINYKN--NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLAR 402
+ G++ ++ N N I++SA GI+L+R+ LL LI Q+ +LAR
Sbjct: 351 SVGAMGFGGNRPHVVAANGPNPTEIWISARTGAGIDLMRSELLRLI-GWQSGNEGAFLAR 409
Query: 403 ERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLD 462
ERH+ +L A +L A S + L+L AE+LR + L+SI G+ T++DLL
Sbjct: 410 ERHLIALRNAESHLELA----EASASQHAQALDLFAEELRLAQDHLNSITGEFTSDDLLG 465
Query: 463 NIFSQFCIGK 472
IF++FCIGK
Sbjct: 466 TIFTRFCIGK 475
>sp|B1YQJ5|MNME_BURA4 tRNA modification GTPase MnmE OS=Burkholderia ambifaria (strain
MC40-6) GN=mnmE PE=3 SV=1
Length = 464
Score = 427 bits (1098), Expect = e-119, Method: Compositional matrix adjust.
Identities = 214/480 (44%), Positives = 313/480 (65%), Gaps = 25/480 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-GKN----LWSIVEIVCKKTKKQLKPRFATYSSF 55
+ T + PI+ IAT GRGG+G++R+S G+ +++ +C + QL PR A+Y F
Sbjct: 2 LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQ---QLAPRHASYVPF 58
Query: 56 FCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMP 115
++ +D+G+ +YF APHSYTGE V+EL GHGGPI++ +LL CL+ G+ GLRLA P
Sbjct: 59 VDEHGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAQP 118
Query: 116 GEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRT 175
GEFT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L++ +I LR
Sbjct: 119 GEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVEDVITLRM 178
Query: 176 LIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235
L+E + DFPEE + L D +L +I+++L ++ ++ AL+R GL+VVL GQPNV
Sbjct: 179 LVEATLDFPEEEIDF-LEAADARGKLARIREQLAHVLGDARQGALLREGLSVVLAGQPNV 237
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKSSL N+L G+++AIVT IAGTTRDK+ +TIQ+ I DTAG +++ +E
Sbjct: 238 GKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAG-------LRETEDE 290
Query: 296 VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355
VE+IGI RTW E++ +D+++++ D+R D D+ I FP +PV+ V NK D +G
Sbjct: 291 VERIGIARTWSEIERADVVLHLLDSRTGMTAD-DEVIAARFPGGVPVVRVLNKTDLTGVP 349
Query: 356 KNINY---KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEA 412
+ + ++ ++LSA + GI++LR LL I Q YLARERH+ +L A
Sbjct: 350 ACVEHPAAAGDLTEVHLSAKRGDGIDMLRAELLR-IAGWQAGAEGVYLARERHLIALRAA 408
Query: 413 NYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A Q ++L+L AE+LR E+L++I G+ T++DLL IFS+FCIGK
Sbjct: 409 QEHLAQAADHAEQR----AQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464
>sp|Q13SH7|MNME_BURXL tRNA modification GTPase MnmE OS=Burkholderia xenovorans (strain
LB400) GN=mnmE PE=3 SV=1
Length = 464
Score = 427 bits (1097), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/478 (45%), Positives = 317/478 (66%), Gaps = 20/478 (4%)
Query: 1 MLTKNS-PIIGIATPPGRGGVGIIRLS-GKNLWSIVEIVCKK-TKKQLKPRFATYSSFFC 57
MLT +S PI+ IAT PGRGG+G++R+S G+ + + + + T + L R A+Y F
Sbjct: 1 MLTTDSDPIVAIATAPGRGGIGVVRISFGRAGEAAAQPLMQALTGQTLAARRASYVPFLD 60
Query: 58 KNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGE 117
+ + +D+G+ +YF APHSYTGE V+EL GHGGP++L ++L C++ G++ GLRLA PGE
Sbjct: 61 ASGDALDRGIALYFPAPHSYTGEHVLELQGHGGPVVLQLVLQRCIDAGRAFGLRLAEPGE 120
Query: 118 FTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLI 177
FT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L++ +I LR L+
Sbjct: 121 FTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVEDVITLRMLV 180
Query: 178 EFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGK 237
E + DFPEE + L D +L +I+++L ++ + ++ AL+R GL+VVL GQPNVGK
Sbjct: 181 EATLDFPEEEIDF-LEAADARGKLARIRERLGHVLSEARQGALLREGLSVVLAGQPNVGK 239
Query: 238 SSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVE 297
SSL N+L G+++AIVT IAGTTRDK+ +TIQI + DTAG+ D +EVE
Sbjct: 240 SSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDTE-------DEVE 292
Query: 298 KIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSG---H 354
KIGI RTW E++ +D+++++ DAR + D+ I FP +PV+ V NK D +G
Sbjct: 293 KIGIARTWNEIERADVVLHLLDARTGMTVE-DEAIAGRFPAGVPVVRVLNKTDLTGLAPA 351
Query: 355 QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY 414
+ ++ +++ + LSA + G+ LLR LL I Q S YLARERH+ +L A
Sbjct: 352 TRALDADLDLSEVRLSAKQGDGVALLREELLR-IAGWQAGAESVYLARERHLIALRAAEE 410
Query: 415 YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A +Q+ + L+L AE+LR ++L+SI G+ +++DLL IFS+FCIGK
Sbjct: 411 HLATAAAHADQN----SQALDLFAEELRLAQDQLNSITGEFSSDDLLGVIFSRFCIGK 464
>sp|Q8Y3H5|MNME_RALSO tRNA modification GTPase MnmE OS=Ralstonia solanacearum (strain
GMI1000) GN=mnmE PE=3 SV=2
Length = 474
Score = 426 bits (1096), Expect = e-118, Method: Compositional matrix adjust.
Identities = 219/476 (46%), Positives = 306/476 (64%), Gaps = 23/476 (4%)
Query: 4 KNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNII 63
+ PI IAT PGRGG+G++R+SG ++ ++++ VC + L PR ATY F + I
Sbjct: 15 RTVPIAAIATAPGRGGIGVVRVSGPDVRAVMQAVCGRL---LPPRQATYLPFLDADGAAI 71
Query: 64 DKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAF 123
D+G+ ++F APHSYTGEDV+EL GHGGP+++ +LLS CL G IGLR+A PGEFT+RAF
Sbjct: 72 DRGIALWFPAPHSYTGEDVLELQGHGGPVVMQLLLSRCLRAGHGIGLRVAEPGEFTRRAF 131
Query: 124 LNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDF 183
LN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ ++ L++++I+LR L+E + DF
Sbjct: 132 LNDKLDLAQAEAVADLIEASTEAAARSAARSLDGVFSQTVHALVERVIHLRMLVEATLDF 191
Query: 184 PEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNS 243
PEE + L D +L I+ +L ++ Q ++ AL+R GL+VVL GQPNVGKSSL N+
Sbjct: 192 PEEEIDF-LEAADARGQLADIRARLDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNA 250
Query: 244 LVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIER 303
L G+++AIVT IAGTTRDK+ +TIQI I DTAG+ D +EVE+IGIER
Sbjct: 251 LAGAELAIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTE-------DEVERIGIER 303
Query: 304 TWVELKNSDIIIYVQDAR-YDKH------TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356
TW + +D+++++ DA Y H D +I ++ P +P + V NKID +G
Sbjct: 304 TWAAIARADVVLHLLDAADYRAHGLSAEDAAIDARIAEHVPPGVPTLRVINKIDLAGAAV 363
Query: 357 NINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYL 416
++LSA GI LLR LL+ I Q YLARERH+ +L A +L
Sbjct: 364 PGRVDAQPPEVWLSARDGSGIELLRAALLE-IAGWQGGGEGLYLARERHLSALRSAREHL 422
Query: 417 SCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ A +Q ++L+L AE+LR E L+SI G +++DLL IFS+FCIGK
Sbjct: 423 TIAADHADQR----AQSLDLFAEELRLAQEALNSITGAFSSDDLLGVIFSRFCIGK 474
>sp|Q0BAQ4|MNME_BURCM tRNA modification GTPase MnmE OS=Burkholderia ambifaria (strain
ATCC BAA-244 / AMMD) GN=mnmE PE=3 SV=2
Length = 464
Score = 426 bits (1095), Expect = e-118, Method: Compositional matrix adjust.
Identities = 214/480 (44%), Positives = 313/480 (65%), Gaps = 25/480 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-GKN----LWSIVEIVCKKTKKQLKPRFATYSSF 55
+ T + PI+ IAT GRGG+G++R+S G+ +++ +C + +L PR A+Y F
Sbjct: 2 LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQ---RLAPRHASYVPF 58
Query: 56 FCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMP 115
++ +D+G+ +YF APHSYTGE V+EL GHGGPI++ +LL CL+ G+ GLRLA P
Sbjct: 59 VDEHGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAQP 118
Query: 116 GEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRT 175
GEFT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L++ +I LR
Sbjct: 119 GEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVEDVITLRM 178
Query: 176 LIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235
L+E + DFPEE + L D +L KI+++L ++ ++ AL+R GL+VVL GQPNV
Sbjct: 179 LVEATLDFPEEEIDF-LEAADARGKLAKIREQLAHVLGDARQGALLREGLSVVLAGQPNV 237
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKSSL N+L G+++AIVT IAGTTRDK+ +TIQ+ I DTAG +++ +E
Sbjct: 238 GKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAG-------LRETEDE 290
Query: 296 VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355
VE+IGI RTW E++ +D+++++ D+R D D+ I FP +PV+ V NK D +G
Sbjct: 291 VERIGIARTWSEIERADVVLHLLDSRTGMTAD-DEVIAARFPGGVPVVRVLNKTDLTGVP 349
Query: 356 KNINY---KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEA 412
+ + ++ ++LSA + GI++LR LL I Q YLARERH+ +L A
Sbjct: 350 ACVEHPAAAGDLTEVHLSAKRGDGIDMLRAELLR-IAGWQAGAEGVYLARERHLIALRAA 408
Query: 413 NYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L+ A Q ++L+L AE+LR E+L++I G+ T++DLL IFS+FCIGK
Sbjct: 409 QEHLAQAADHAEQR----AQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464
>sp|A4JJ44|MNME_BURVG tRNA modification GTPase MnmE OS=Burkholderia vietnamiensis (strain
G4 / LMG 22486) GN=mnmE PE=3 SV=1
Length = 464
Score = 421 bits (1081), Expect = e-117, Method: Compositional matrix adjust.
Identities = 212/477 (44%), Positives = 309/477 (64%), Gaps = 19/477 (3%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-GKNLWSIVEIVCKK-TKKQLKPRFATYSSFFCK 58
+ T + PI+ IAT GRGG+G++R+S G+ + + + ++L PR A+Y F
Sbjct: 2 LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAAQALSDALCGQRLAPRHASYVPFVDA 61
Query: 59 NNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEF 118
+ +D+G+ +YF APHSYTGE V+EL GHGGPI++ +LL CL+ G+ GLRLA PGEF
Sbjct: 62 HGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEPGEF 121
Query: 119 TKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIE 178
T+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL FS+ I+ L++ +I LR L+E
Sbjct: 122 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDSAFSRQIHALVEDVITLRMLVE 181
Query: 179 FSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKS 238
+ DFPEE + L D +L KI+++L ++ ++ AL+R GL+VVL GQPNVGKS
Sbjct: 182 ATLDFPEEEIDF-LEAADARGKLAKIREQLAHVLGDARQGALLREGLSVVLAGQPNVGKS 240
Query: 239 SLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEK 298
SL N+L G+++AIVT IAGTTRDK+ +TIQ+ I DTAG +++ +EVE+
Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAG-------LRETEDEVER 293
Query: 299 IGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
IGI RTW E++ +D+++++ D+R T D+ I FP +PV+ V NK D +G +
Sbjct: 294 IGIARTWSEIERADVVLHLLDSRTGM-TPEDETIAARFPDGVPVVRVLNKTDLTGVPACV 352
Query: 359 NY---KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYY 415
+ ++ ++LSA + GI++LR LL I Q YLARERH+ +L A +
Sbjct: 353 EHPAAAGDLTEVHLSAKRGDGIDMLRAELLR-IAGWQAGAEGVYLARERHLIALRAAQEH 411
Query: 416 LSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L+ A Q ++L+L AE+LR E+L++I G+ T++DLL IFS+FCIGK
Sbjct: 412 LAQAADHAEQR----AQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464
>sp|A9IJ97|MNME_BORPD tRNA modification GTPase MnmE OS=Bordetella petrii (strain ATCC
BAA-461 / DSM 12804 / CCUG 43448) GN=mnmE PE=3 SV=1
Length = 452
Score = 417 bits (1072), Expect = e-115, Method: Compositional matrix adjust.
Identities = 207/470 (44%), Positives = 299/470 (63%), Gaps = 21/470 (4%)
Query: 3 TKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNI 62
+ + PI IAT PGRGG+G++R+SG +L ++ + ++L PR A Y F +
Sbjct: 4 STHVPIAAIATAPGRGGIGVVRISGPDLSALAR---RLFGRELTPRHAHYLPFTAETGEH 60
Query: 63 IDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRA 122
+D+G+ +YF+AP SYTGEDV+EL GHGGP +L +L CL+ G +G+RLA PGEFT+RA
Sbjct: 61 LDEGIALYFRAPQSYTGEDVLELQGHGGPAVLRRILERCLQAGADLGVRLAEPGEFTRRA 120
Query: 123 FLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFD 182
FLN+++DL Q EA+ DLI+AS+ +AA+ AM SLSG+FS +N L D++++LR L+E + D
Sbjct: 121 FLNDRMDLAQAEAVADLIDASSVAAARGAMASLSGEFSARVNALSDRIVHLRMLVEATLD 180
Query: 183 FPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFN 242
FPEE + L K L + L +I Q ++ ++R GL+VVL G+PNVGKSSL N
Sbjct: 181 FPEEEIDF-LEKYQARPTLQALAADLATLIAQARQGVILREGLHVVLAGKPNVGKSSLLN 239
Query: 243 SLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302
+L G D+AIVT IAGTTRDK+ + I I+ I DTAG+ D + + VE IGI
Sbjct: 240 ALAGDDIAIVTPIAGTTRDKVVQEIHIDGVPLHIVDTAGLRDTD-------DTVESIGIA 292
Query: 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKN 362
RTW E++ +D+I+++QDA + D +I+ P P++ V+NK+D + ++
Sbjct: 293 RTWKEIERADVILHLQDA-TQPADELDAQIVARLPARTPLLTVFNKVDL----LDQPFQA 347
Query: 363 NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKI 422
+ +SA + G++ LR LL L E SP+LARERH+H+L A +L A +
Sbjct: 348 QAGQLGISAREGAGLDELRARLLALAGWNPGAE-SPWLARERHVHALQRAAEHLEAATEH 406
Query: 423 INQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q ++ L+L AE+LR H+ LSSI GK T++DLL IFS FCIGK
Sbjct: 407 AAQD----DRVLDLFAEELRLAHDSLSSITGKFTSDDLLGEIFSSFCIGK 452
>sp|Q63YV9|MNME_BURPS tRNA modification GTPase MnmE OS=Burkholderia pseudomallei (strain
K96243) GN=mnmE PE=3 SV=1
Length = 467
Score = 416 bits (1069), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/483 (45%), Positives = 311/483 (64%), Gaps = 28/483 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-----GKNLWSIVEIVCKKTKKQLKPRFATYSSF 55
+ T + PI+ IAT GRGG+G++RLS ++ + +C +L PR A+Y F
Sbjct: 2 LATDSDPIVAIATASGRGGIGVVRLSLGRAGEAAARALSDALCGA---RLMPRHASYVPF 58
Query: 56 FCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMP 115
+D+G+ +YF APHSYTGE VIEL GHGGPI+L +LL CL+ G++ GLRLA P
Sbjct: 59 LDGAGEPLDRGIALYFPAPHSYTGEHVIELQGHGGPIVLQLLLQRCLDAGRAHGLRLAEP 118
Query: 116 GEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRT 175
GEFT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L+D +I LR
Sbjct: 119 GEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVDDVIALRM 178
Query: 176 LIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235
L+E + DFPEE + L D +L I+++L ++ ++ AL+R GL+VVL GQPNV
Sbjct: 179 LVEATLDFPEEEIDF-LEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNV 237
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKSSL N+L G+++AIVT IAGTTRDK+ +TIQI I DTAG +++ +E
Sbjct: 238 GKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHIIDTAG-------LRETEDE 290
Query: 296 VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355
VEKIGI RTW E++ +D+++++ DAR D+ I FP +PV+ V NK D +G
Sbjct: 291 VEKIGIARTWGEIERADVVLHLLDARSGLGPG-DEAIAARFPDGVPVVRVLNKTDLTGAP 349
Query: 356 KNIN------YKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSL 409
++ + ++ + LSA + GI+LLR LL I Q S YLARERH+ +L
Sbjct: 350 ASVTRTGGGAARADVCEVRLSAKRGDGIDLLRGELLR-IAGWQAGAESVYLARERHLIAL 408
Query: 410 NEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFC 469
A +L+ A + +E+N + L+L AE+LR E+L+SI G+ T++DLL IFS+FC
Sbjct: 409 RAAQAHLARAAE---HAEQNAQA-LDLFAEELRLAQERLNSITGEFTSDDLLGVIFSRFC 464
Query: 470 IGK 472
IGK
Sbjct: 465 IGK 467
>sp|A3N480|MNME_BURP6 tRNA modification GTPase MnmE OS=Burkholderia pseudomallei (strain
668) GN=mnmE PE=3 SV=1
Length = 467
Score = 416 bits (1069), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/483 (45%), Positives = 311/483 (64%), Gaps = 28/483 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-----GKNLWSIVEIVCKKTKKQLKPRFATYSSF 55
+ T + PI+ IAT GRGG+G++RLS ++ + +C +L PR A+Y F
Sbjct: 2 LATDSDPIVAIATASGRGGIGVVRLSLGRAGEAAARALSDALCGA---RLMPRHASYVPF 58
Query: 56 FCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMP 115
+D+G+ +YF APHSYTGE VIEL GHGGPI+L +LL CL+ G++ GLRLA P
Sbjct: 59 LDGAGEPLDRGIALYFPAPHSYTGEHVIELQGHGGPIVLQLLLQRCLDAGRAHGLRLAEP 118
Query: 116 GEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRT 175
GEFT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L+D +I LR
Sbjct: 119 GEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVDDVIALRM 178
Query: 176 LIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235
L+E + DFPEE + L D +L I+++L ++ ++ AL+R GL+VVL GQPNV
Sbjct: 179 LVEATLDFPEEEIDF-LEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNV 237
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKSSL N+L G+++AIVT IAGTTRDK+ +TIQI I DTAG +++ +E
Sbjct: 238 GKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHIIDTAG-------LRETEDE 290
Query: 296 VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355
VEKIGI RTW E++ +D+++++ DAR D+ I FP +PV+ V NK D +G
Sbjct: 291 VEKIGIARTWGEIERADVVLHLLDARSGLGPG-DEAIAARFPDGVPVVRVLNKTDLTGAP 349
Query: 356 KNIN------YKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSL 409
++ + ++ + LSA + GI+LLR LL I Q S YLARERH+ +L
Sbjct: 350 ASVTRTGGGAARADVCEVRLSAKRGDGIDLLRGELLR-IAGWQAGAESVYLARERHLIAL 408
Query: 410 NEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFC 469
A +L+ A + +E+N + L+L AE+LR E+L+SI G+ T++DLL IFS+FC
Sbjct: 409 RAAQAHLARAAE---HAEQNAQA-LDLFAEELRLAQERLNSITGEFTSDDLLGVIFSRFC 464
Query: 470 IGK 472
IGK
Sbjct: 465 IGK 467
>sp|A3NPX5|MNME_BURP0 tRNA modification GTPase MnmE OS=Burkholderia pseudomallei (strain
1106a) GN=mnmE PE=3 SV=1
Length = 467
Score = 416 bits (1069), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/483 (45%), Positives = 311/483 (64%), Gaps = 28/483 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-----GKNLWSIVEIVCKKTKKQLKPRFATYSSF 55
+ T + PI+ IAT GRGG+G++RLS ++ + +C +L PR A+Y F
Sbjct: 2 LATDSDPIVAIATASGRGGIGVVRLSLGRAGEAAARALSDALCGA---RLMPRHASYVPF 58
Query: 56 FCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMP 115
+D+G+ +YF APHSYTGE VIEL GHGGPI+L +LL CL+ G++ GLRLA P
Sbjct: 59 LDGAGEPLDRGIALYFPAPHSYTGEHVIELQGHGGPIVLQLLLQRCLDAGRAHGLRLAEP 118
Query: 116 GEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRT 175
GEFT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L+D +I LR
Sbjct: 119 GEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVDDVIALRM 178
Query: 176 LIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235
L+E + DFPEE + L D +L I+++L ++ ++ AL+R GL+VVL GQPNV
Sbjct: 179 LVEATLDFPEEEIDF-LEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNV 237
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKSSL N+L G+++AIVT IAGTTRDK+ +TIQI I DTAG +++ +E
Sbjct: 238 GKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHIIDTAG-------LRETEDE 290
Query: 296 VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355
VEKIGI RTW E++ +D+++++ DAR D+ I FP +PV+ V NK D +G
Sbjct: 291 VEKIGIARTWGEIERADVVLHLLDARSGLGPG-DEAIAARFPDGVPVVRVLNKTDLTGAP 349
Query: 356 KNIN------YKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSL 409
++ + ++ + LSA + GI+LLR LL I Q S YLARERH+ +L
Sbjct: 350 ASVTRTGGGAARADVCEVRLSAKRGDGIDLLRGELLR-IAGWQAGAESVYLARERHLIAL 408
Query: 410 NEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFC 469
A +L+ A + +E+N + L+L AE+LR E+L+SI G+ T++DLL IFS+FC
Sbjct: 409 RAAQAHLARAAE---HAEQNAQA-LDLFAEELRLAQERLNSITGEFTSDDLLGVIFSRFC 464
Query: 470 IGK 472
IGK
Sbjct: 465 IGK 467
>sp|A1V7D3|MNME_BURMS tRNA modification GTPase MnmE OS=Burkholderia mallei (strain SAVP1)
GN=mnmE PE=3 SV=2
Length = 467
Score = 416 bits (1069), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/483 (45%), Positives = 311/483 (64%), Gaps = 28/483 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-----GKNLWSIVEIVCKKTKKQLKPRFATYSSF 55
+ T + PI+ IAT GRGG+G++RLS ++ + +C +L PR A+Y F
Sbjct: 2 LATDSDPIVAIATASGRGGIGVVRLSLGRAGEAAARALSDALCGA---RLMPRHASYVPF 58
Query: 56 FCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMP 115
+D+G+ +YF APHSYTGE VIEL GHGGPI+L +LL CL+ G++ GLRLA P
Sbjct: 59 LDGAGEPLDRGIALYFPAPHSYTGEHVIELQGHGGPIVLQLLLQRCLDAGRAHGLRLAEP 118
Query: 116 GEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRT 175
GEFT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L+D +I LR
Sbjct: 119 GEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVDDVIALRM 178
Query: 176 LIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235
L+E + DFPEE + L D +L I+++L ++ ++ AL+R GL+VVL GQPNV
Sbjct: 179 LVEATLDFPEEEIDF-LEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNV 237
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKSSL N+L G+++AIVT IAGTTRDK+ +TIQI I DTAG +++ +E
Sbjct: 238 GKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHIIDTAG-------LRETEDE 290
Query: 296 VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355
VEKIGI RTW E++ +D+++++ DAR D+ I FP +PV+ V NK D +G
Sbjct: 291 VEKIGIARTWGEIERADVVLHLLDARSGLGPG-DEAIAARFPDGVPVVRVLNKTDLTGAP 349
Query: 356 KNIN------YKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSL 409
++ + ++ + LSA + GI+LLR LL I Q S YLARERH+ +L
Sbjct: 350 ASVTRTGGGAARADVCEVRLSAKRGDGIDLLRGELLR-IAGWQAGAESVYLARERHLIAL 408
Query: 410 NEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFC 469
A +L+ A + +E+N + L+L AE+LR E+L+SI G+ T++DLL IFS+FC
Sbjct: 409 RAAQAHLARAAE---HAEQNAQA-LDLFAEELRLAQERLNSITGEFTSDDLLGVIFSRFC 464
Query: 470 IGK 472
IGK
Sbjct: 465 IGK 467
>sp|Q62EM6|MNME_BURMA tRNA modification GTPase MnmE OS=Burkholderia mallei (strain ATCC
23344) GN=mnmE PE=3 SV=1
Length = 467
Score = 416 bits (1069), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/483 (45%), Positives = 311/483 (64%), Gaps = 28/483 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-----GKNLWSIVEIVCKKTKKQLKPRFATYSSF 55
+ T + PI+ IAT GRGG+G++RLS ++ + +C +L PR A+Y F
Sbjct: 2 LATDSDPIVAIATASGRGGIGVVRLSLGRAGEAAARALSDALCGA---RLMPRHASYVPF 58
Query: 56 FCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMP 115
+D+G+ +YF APHSYTGE VIEL GHGGPI+L +LL CL+ G++ GLRLA P
Sbjct: 59 LDGAGEPLDRGIALYFPAPHSYTGEHVIELQGHGGPIVLQLLLQRCLDAGRAHGLRLAEP 118
Query: 116 GEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRT 175
GEFT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L+D +I LR
Sbjct: 119 GEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVDDVIALRM 178
Query: 176 LIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235
L+E + DFPEE + L D +L I+++L ++ ++ AL+R GL+VVL GQPNV
Sbjct: 179 LVEATLDFPEEEIDF-LEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNV 237
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKSSL N+L G+++AIVT IAGTTRDK+ +TIQI I DTAG +++ +E
Sbjct: 238 GKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHIIDTAG-------LRETEDE 290
Query: 296 VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355
VEKIGI RTW E++ +D+++++ DAR D+ I FP +PV+ V NK D +G
Sbjct: 291 VEKIGIARTWGEIERADVVLHLLDARSGLGPG-DEAIAARFPDGVPVVRVLNKTDLTGAP 349
Query: 356 KNIN------YKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSL 409
++ + ++ + LSA + GI+LLR LL I Q S YLARERH+ +L
Sbjct: 350 ASVTRTGGGAARADVCEVRLSAKRGDGIDLLRGELLR-IAGWQAGAESVYLARERHLIAL 408
Query: 410 NEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFC 469
A +L+ A + +E+N + L+L AE+LR E+L+SI G+ T++DLL IFS+FC
Sbjct: 409 RAAQAHLARAAE---HAEQNAQA-LDLFAEELRLAQERLNSITGEFTSDDLLGVIFSRFC 464
Query: 470 IGK 472
IGK
Sbjct: 465 IGK 467
>sp|A2S8D8|MNME_BURM9 tRNA modification GTPase MnmE OS=Burkholderia mallei (strain NCTC
10229) GN=mnmE PE=3 SV=2
Length = 467
Score = 416 bits (1069), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/483 (45%), Positives = 311/483 (64%), Gaps = 28/483 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-----GKNLWSIVEIVCKKTKKQLKPRFATYSSF 55
+ T + PI+ IAT GRGG+G++RLS ++ + +C +L PR A+Y F
Sbjct: 2 LATDSDPIVAIATASGRGGIGVVRLSLGRAGEAAARALSDALCGA---RLMPRHASYVPF 58
Query: 56 FCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMP 115
+D+G+ +YF APHSYTGE VIEL GHGGPI+L +LL CL+ G++ GLRLA P
Sbjct: 59 LDGAGEPLDRGIALYFPAPHSYTGEHVIELQGHGGPIVLQLLLQRCLDAGRAHGLRLAEP 118
Query: 116 GEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRT 175
GEFT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L+D +I LR
Sbjct: 119 GEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVDDVIALRM 178
Query: 176 LIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235
L+E + DFPEE + L D +L I+++L ++ ++ AL+R GL+VVL GQPNV
Sbjct: 179 LVEATLDFPEEEIDF-LEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNV 237
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKSSL N+L G+++AIVT IAGTTRDK+ +TIQI I DTAG +++ +E
Sbjct: 238 GKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHIIDTAG-------LRETEDE 290
Query: 296 VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355
VEKIGI RTW E++ +D+++++ DAR D+ I FP +PV+ V NK D +G
Sbjct: 291 VEKIGIARTWGEIERADVVLHLLDARSGLGPG-DEAIAARFPDGVPVVRVLNKTDLTGAP 349
Query: 356 KNIN------YKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSL 409
++ + ++ + LSA + GI+LLR LL I Q S YLARERH+ +L
Sbjct: 350 ASVTRTGGGAARADVCEVRLSAKRGDGIDLLRGELLR-IAGWQAGAESVYLARERHLIAL 408
Query: 410 NEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFC 469
A +L+ A + +E+N + L+L AE+LR E+L+SI G+ T++DLL IFS+FC
Sbjct: 409 RAAQAHLARAAE---HAEQNAQA-LDLFAEELRLAQERLNSITGEFTSDDLLGVIFSRFC 464
Query: 470 IGK 472
IGK
Sbjct: 465 IGK 467
>sp|A3MS17|MNME_BURM7 tRNA modification GTPase MnmE OS=Burkholderia mallei (strain NCTC
10247) GN=mnmE PE=3 SV=2
Length = 467
Score = 416 bits (1069), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/483 (45%), Positives = 311/483 (64%), Gaps = 28/483 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-----GKNLWSIVEIVCKKTKKQLKPRFATYSSF 55
+ T + PI+ IAT GRGG+G++RLS ++ + +C +L PR A+Y F
Sbjct: 2 LATDSDPIVAIATASGRGGIGVVRLSLGRAGEAAARALSDALCGA---RLMPRHASYVPF 58
Query: 56 FCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMP 115
+D+G+ +YF APHSYTGE VIEL GHGGPI+L +LL CL+ G++ GLRLA P
Sbjct: 59 LDGAGEPLDRGIALYFPAPHSYTGEHVIELQGHGGPIVLQLLLQRCLDAGRAHGLRLAEP 118
Query: 116 GEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRT 175
GEFT+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L+D +I LR
Sbjct: 119 GEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVDDVIALRM 178
Query: 176 LIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235
L+E + DFPEE + L D +L I+++L ++ ++ AL+R GL+VVL GQPNV
Sbjct: 179 LVEATLDFPEEEIDF-LEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNV 237
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKSSL N+L G+++AIVT IAGTTRDK+ +TIQI I DTAG +++ +E
Sbjct: 238 GKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHIIDTAG-------LRETEDE 290
Query: 296 VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355
VEKIGI RTW E++ +D+++++ DAR D+ I FP +PV+ V NK D +G
Sbjct: 291 VEKIGIARTWGEIERADVVLHLLDARSGLGPG-DEAIAARFPDGVPVVRVLNKTDLTGAP 349
Query: 356 KNIN------YKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSL 409
++ + ++ + LSA + GI+LLR LL I Q S YLARERH+ +L
Sbjct: 350 ASVTRTGGGAARADVCEVRLSAKRGDGIDLLRGELLR-IAGWQAGAESVYLARERHLIAL 408
Query: 410 NEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFC 469
A +L+ A + +E+N + L+L AE+LR E+L+SI G+ T++DLL IFS+FC
Sbjct: 409 RAAQAHLARAAE---HAEQNAQA-LDLFAEELRLAQERLNSITGEFTSDDLLGVIFSRFC 464
Query: 470 IGK 472
IGK
Sbjct: 465 IGK 467
>sp|Q7W2J0|MNME_BORPA tRNA modification GTPase MnmE OS=Bordetella parapertussis (strain
12822 / ATCC BAA-587 / NCTC 13253) GN=mnmE PE=3 SV=1
Length = 450
Score = 416 bits (1069), Expect = e-115, Method: Compositional matrix adjust.
Identities = 209/457 (45%), Positives = 295/457 (64%), Gaps = 21/457 (4%)
Query: 16 GRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPH 75
GRGG+G++R+SG +L E+ + + L PR A Y F + +ID+GL IYF+APH
Sbjct: 15 GRGGIGVVRISGPDL---AELAQRLFGRPLTPRHAHYLPFRAADGEVIDEGLAIYFRAPH 71
Query: 76 SYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVEA 135
SYTGEDV+EL GHGGP +L +L+ CL+ G +GLR A PGEFT+RAFLN +LDL Q EA
Sbjct: 72 SYTGEDVLELQGHGGPAVLRRILARCLQAGHDLGLRPAEPGEFTRRAFLNERLDLAQAEA 131
Query: 136 IIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELILNKN 195
+ DLI+AS+E+AA+ AM SLSG+FS+ +N L D++I+LR L+E + DFPEE + L K
Sbjct: 132 VADLIDASSEAAARGAMASLSGEFSQRVNDLSDRIIHLRMLVEATLDFPEEEIDF-LEKY 190
Query: 196 DFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSI 255
L + L +I Q ++ ++R GL+VVL G+PNVGKSSL N+L G D+AIVT I
Sbjct: 191 QARPTLQALTHDLDTLIAQARQGVILREGLHVVLAGKPNVGKSSLLNALAGDDIAIVTPI 250
Query: 256 AGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIII 315
AGTTRDK+ + I I+ I DTAG+ D + + VE IGIERTW E++ +D+I+
Sbjct: 251 AGTTRDKVVQEIHIDGVPLHIVDTAGLRDTD-------DAVESIGIERTWKEIERADLIL 303
Query: 316 YVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKRI 375
++QD D +I++ P PV+ V+NK+D + ++ ++ +SA I
Sbjct: 304 HLQDVTQPP-DHLDAQIVRRLPARTPVLNVFNKVDL----LDAAFQGQPDSLAISARGGI 358
Query: 376 GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLE 435
G++ LR LL L E SP+LARERH+H+L +A +L +I + + ++ L+
Sbjct: 359 GLDALRQRLLQLAGWNPGAE-SPWLARERHLHALQQAAQHL----EIATEHAREDDRVLD 413
Query: 436 LIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L AE+LR HE L+ I GK T++DLL IFS FCIGK
Sbjct: 414 LFAEELRLAHEALTGITGKFTSDDLLGEIFSSFCIGK 450
>sp|Q7VSR5|MNME_BORPE tRNA modification GTPase MnmE OS=Bordetella pertussis (strain
Tohama I / ATCC BAA-589 / NCTC 13251) GN=mnmE PE=3 SV=1
Length = 450
Score = 416 bits (1068), Expect = e-115, Method: Compositional matrix adjust.
Identities = 209/457 (45%), Positives = 295/457 (64%), Gaps = 21/457 (4%)
Query: 16 GRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPH 75
GRGG+G++R+SG +L E+ + + L PR A Y F + +ID+GL IYF+APH
Sbjct: 15 GRGGIGVVRISGPDL---AELAQRLFGRPLTPRHAHYLPFRAADGEVIDEGLAIYFRAPH 71
Query: 76 SYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVEA 135
SYTGEDV+EL GHGGP +L +L+ CL+ G +GLR A PGEFT+RAFLN +LDL Q EA
Sbjct: 72 SYTGEDVLELQGHGGPAVLRRILARCLQAGHDLGLRPAEPGEFTRRAFLNERLDLAQAEA 131
Query: 136 IIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELILNKN 195
+ DLI+AS+E+AA+ AM SLSG+FS+ +N L D++I+LR L+E + DFPEE + L K
Sbjct: 132 VADLIDASSEAAARGAMASLSGEFSQRVNDLSDRIIHLRMLVEATLDFPEEEIDF-LEKY 190
Query: 196 DFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSI 255
L + L +I Q ++ ++R GL+VVL G+PNVGKSSL N+L G D+AIVT I
Sbjct: 191 QARPTLQALTHDLDTLIAQARQGVILREGLHVVLAGKPNVGKSSLLNALAGDDIAIVTPI 250
Query: 256 AGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIII 315
AGTTRDK+ + I I+ I DTAG+ D + + VE IGIERTW E++ +D+I+
Sbjct: 251 AGTTRDKVVQEIHIDGVPLHIVDTAGLRDTD-------DAVESIGIERTWKEIERADLIL 303
Query: 316 YVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKRI 375
++QD D +I++ P PV+ V+NK+D + ++ ++ +SA I
Sbjct: 304 HLQDVTQPP-DHLDAQIVRRLPARTPVLNVFNKVDL----LDAAFQGQPDSLAISARGGI 358
Query: 376 GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLE 435
G++ LR LL L E SP+LARERH+H+L +A +L +I + + ++ L+
Sbjct: 359 GLDALRQHLLQLAGWNPGAE-SPWLARERHLHALQQAAQHL----EIATEHAREDDRVLD 413
Query: 436 LIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L AE+LR HE L+ I GK T++DLL IFS FCIGK
Sbjct: 414 LFAEELRLAHEALTGITGKFTSDDLLGEIFSSFCIGK 450
>sp|Q7WDI4|MNME_BORBR tRNA modification GTPase MnmE OS=Bordetella bronchiseptica (strain
ATCC BAA-588 / NCTC 13252 / RB50) GN=mnmE PE=3 SV=1
Length = 450
Score = 416 bits (1068), Expect = e-115, Method: Compositional matrix adjust.
Identities = 209/457 (45%), Positives = 295/457 (64%), Gaps = 21/457 (4%)
Query: 16 GRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPH 75
GRGG+G++R+SG +L E+ + + L PR A Y F + +ID+GL IYF+APH
Sbjct: 15 GRGGIGVVRISGPDL---AELAQRLFGRPLTPRHAHYLPFRAADGEVIDEGLAIYFRAPH 71
Query: 76 SYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVEA 135
SYTGEDV+EL GHGGP +L +L+ CL+ G +GLR A PGEFT+RAFLN +LDL Q EA
Sbjct: 72 SYTGEDVLELQGHGGPAVLRRILARCLQAGHDLGLRPAEPGEFTRRAFLNERLDLAQAEA 131
Query: 136 IIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELILNKN 195
+ DLI+AS+E+AA+ AM SLSG+FS+ +N L D++I+LR L+E + DFPEE + L K
Sbjct: 132 VADLIDASSEAAARGAMTSLSGEFSQRVNDLSDRIIHLRMLVEATLDFPEEEIDF-LEKY 190
Query: 196 DFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSI 255
L + L +I Q ++ ++R GL+VVL G+PNVGKSSL N+L G D+AIVT I
Sbjct: 191 QARPTLQALTHDLDTLIAQARQGVILREGLHVVLAGKPNVGKSSLLNALAGDDIAIVTPI 250
Query: 256 AGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIII 315
AGTTRDK+ + I I+ I DTAG+ D + + VE IGIERTW E++ +D+I+
Sbjct: 251 AGTTRDKVVQEIHIDGVPLHIVDTAGLRDTD-------DAVESIGIERTWKEIERADLIL 303
Query: 316 YVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKRI 375
++QD D +I++ P PV+ V+NK+D + ++ ++ +SA I
Sbjct: 304 HLQDVTQPP-DHLDAQIVRRLPARTPVLNVFNKVDL----LDAAFQGQPDSLAISARGGI 358
Query: 376 GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLE 435
G++ LR LL L E SP+LARERH+H+L +A +L +I + + ++ L+
Sbjct: 359 GLDALRQRLLQLAGWNPGAE-SPWLARERHLHALQQAAQHL----EIATEHAREDDRVLD 413
Query: 436 LIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L AE+LR HE L+ I GK T++DLL IFS FCIGK
Sbjct: 414 LFAEELRLAHEALTGITGKFTSDDLLGEIFSSFCIGK 450
>sp|Q2KTI2|MNME_BORA1 tRNA modification GTPase MnmE OS=Bordetella avium (strain 197N)
GN=mnmE PE=3 SV=1
Length = 450
Score = 415 bits (1067), Expect = e-115, Method: Compositional matrix adjust.
Identities = 216/466 (46%), Positives = 299/466 (64%), Gaps = 21/466 (4%)
Query: 7 PIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKG 66
PI IAT PGRGG+G++R+SG L + + + + L PR A Y F ++ ID+G
Sbjct: 6 PIAAIATAPGRGGIGVVRVSGPRLDAYIRALLGR---DLTPRHAHYLPFLAEDGERIDEG 62
Query: 67 LVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNN 126
+ IYF+ PHSYTGEDV+EL GHGGP +L LL+ CLE G+S+G+RLA PGEFT+RAFLN+
Sbjct: 63 IAIYFQGPHSYTGEDVLELQGHGGPAVLKRLLARCLEAGRSLGMRLAEPGEFTRRAFLND 122
Query: 127 KLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEE 186
++DL Q EA+ DLI AS+E+AA+ AM SLSG+FS+ IN L ++++LR L+E + DFPEE
Sbjct: 123 RMDLAQAEAVADLIEASSEAAARGAMASLSGEFSQRINDLSGRIVHLRMLVEATLDFPEE 182
Query: 187 NQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVG 246
+ L K L +++ L +I Q ++ ++R GL+VVL GQPNVGKSSL N+L G
Sbjct: 183 EIDF-LEKYQARPTLDGLRQDLDTLIAQARQGIILREGLHVVLAGQPNVGKSSLLNALAG 241
Query: 247 SDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWV 306
D+AIVT IAGTTRDK+ + I I+ I DTAG +++ + VE IGI RTW
Sbjct: 242 DDIAIVTPIAGTTRDKVVQEIFIDGVPLHIVDTAG-------LRETEDTVESIGIARTWK 294
Query: 307 ELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIAN 366
E++ +D+I+++QDA D I P PV+ V+NKID + +N+I
Sbjct: 295 EIERADLILHLQDATAPGDI-LDVDITARLPARTPVLAVFNKIDLLTSTAQL-AENSIG- 351
Query: 367 IYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQS 426
+SA + +G+ LR LL + E SP+LARERH+H+L A +L A + +
Sbjct: 352 --ISAKQGLGLEELRARLLQMAGWNPGAE-SPWLARERHLHALQAARDHLDIAAEHASHD 408
Query: 427 EKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ L+L AE+LR HE LSSI GK T++DLL IFS FCIGK
Sbjct: 409 ----DRVLDLFAEELRLSHESLSSITGKFTSDDLLGEIFSSFCIGK 450
>sp|A1VUS4|MNME_POLNA tRNA modification GTPase MnmE OS=Polaromonas naphthalenivorans
(strain CJ2) GN=mnmE PE=3 SV=1
Length = 478
Score = 411 bits (1056), Expect = e-114, Method: Compositional matrix adjust.
Identities = 215/499 (43%), Positives = 312/499 (62%), Gaps = 48/499 (9%)
Query: 1 MLTKNS-PIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKN 59
ML ++ PI+ IAT PGRGGVGI+RLSG+ + +V+ +C + +L PR ATY F +
Sbjct: 1 MLARHHHPIVAIATAPGRGGVGIVRLSGQRIAPVVQALCGR---KLSPRQATYLPFRDAH 57
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIG---------- 109
IIDKGL I+F APHSYTGEDV+EL HGGP++L +LL+ CLE G ++
Sbjct: 58 GQIIDKGLAIFFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAGAALDPATGQPVLAQ 117
Query: 110 LRLAMPGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDK 169
LR+A PGEFT+RAFLN+K+DL Q EAI DLI+ASTE+AA+SA S+SG+FS+ +N LL++
Sbjct: 118 LRVAEPGEFTERAFLNDKIDLAQAEAIADLIDASTETAARSAARSMSGEFSQAVNTLLEQ 177
Query: 170 LINLRTLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVL 229
LI+LR L+E + DFPEE+ + L + D +L++++ L ++ + + A++R G+ VV+
Sbjct: 178 LIHLRMLVEATLDFPEEDIDF-LQQADAQGQLLRLQATLASVLARATQGAILREGIKVVI 236
Query: 230 IGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKI 289
GQPNVGKSSL N+L G+++AIVT +AGTTRDK+++ IQI + DTAG +
Sbjct: 237 AGQPNVGKSSLLNALAGAELAIVTPVAGTTRDKVSQLIQIEGVPLHVVDTAG-------L 289
Query: 290 KKNINEVEKIGIERTWVELKNSDIIIYVQD-ARYDKHTD-------------FDKKIIKN 335
++ ++EVEKIGI+R W E++++D ++++ D AR+D + +
Sbjct: 290 REALDEVEKIGIQRAWTEIESADAVLFLHDLARHDATENPLYAINYIADDARLQSALALK 349
Query: 336 FPMNIPVIYVWNKIDYSGHQ--KNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQT 393
P N +I VWNK D +G + + +N + +SA G+ LR LL ++ Q
Sbjct: 350 LPKNTAIIDVWNKSDMAGPELLRQVN-----GGVLISAKTGAGLQALREQLLRVV-GWQA 403
Query: 394 IESSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIG 453
++ARERH+ +L L A NQ + L+L+AEDLR LSSI G
Sbjct: 404 APEGVFMARERHVSALRSVQIQLLTA---QNQLQAAV-PALDLLAEDLRQAQLHLSSITG 459
Query: 454 KSTTNDLLDNIFSQFCIGK 472
+DLL IFS+FCIGK
Sbjct: 460 AFNADDLLGEIFSKFCIGK 478
>sp|Q121L2|MNME_POLSJ tRNA modification GTPase MnmE OS=Polaromonas sp. (strain JS666 /
ATCC BAA-500) GN=mnmE PE=3 SV=1
Length = 478
Score = 411 bits (1056), Expect = e-114, Method: Compositional matrix adjust.
Identities = 210/497 (42%), Positives = 309/497 (62%), Gaps = 44/497 (8%)
Query: 1 MLTKN-SPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKN 59
ML ++ PI+ IAT PGRG VGI+R+SGK++ ++ +C + L PR ATY F
Sbjct: 1 MLARHHDPIVAIATAPGRGAVGIVRVSGKDIAPVIAAICGRA---LAPRQATYLPFRDAQ 57
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIG---------- 109
+ID+GL I+F APHSYTGEDV+EL HGGP++L +LL+ CLE G ++
Sbjct: 58 GQVIDQGLAIHFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAGAALNPAIGQPWLAQ 117
Query: 110 LRLAMPGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDK 169
LR+A PGEFT+RAFLN+K+DL Q EAI DLI+ASTE+AA+SA S+SG+FS +N LL++
Sbjct: 118 LRVAQPGEFTERAFLNDKIDLAQAEAIADLIDASTETAARSAARSMSGEFSLAVNTLLEQ 177
Query: 170 LINLRTLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVL 229
LI+LR L+E + DFPEE+ + L K D +L +++ L ++Q+ + A++R G+ VV+
Sbjct: 178 LIHLRMLVEATLDFPEEDIDF-LQKADAQGQLSRLQATLTGVMQRATQGAILREGIKVVI 236
Query: 230 IGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKI 289
GQPN GKSSL N+L G+++AIVT IAGTTRDK+++ IQI + DTAG +
Sbjct: 237 AGQPNAGKSSLLNALAGAELAIVTPIAGTTRDKVSELIQIEGVPLHVVDTAG-------L 289
Query: 290 KKNINEVEKIGIERTWVELKNSDIIIYVQD-ARYDK---------HTDFDKKIIKN---- 335
++ ++EVEKIG+ER W E++++D ++++ D +R D + D +I +
Sbjct: 290 REALDEVEKIGVERAWAEIESADAVLFLHDLSRRDAALPAQDTINYIAADDRIARTLANK 349
Query: 336 FPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIE 395
P N +I VWNK D + + + +SA G+ LR LL ++ Q
Sbjct: 350 LPENTAIIDVWNKSDLT---SPAGLQQVQGGVLISAKTGAGLQTLRQRLLQVV-GWQAAP 405
Query: 396 SSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKS 455
++ARERH+ +L+ L+ A + + + L+L+AEDLR +LS I G+
Sbjct: 406 EGVFMARERHVRALHHVQDQLATAGRQLQAA----RPALDLLAEDLRQAQRQLSEITGEF 461
Query: 456 TTNDLLDNIFSQFCIGK 472
T +DLL IFS+FCIGK
Sbjct: 462 TPDDLLGEIFSRFCIGK 478
>sp|A1WDB4|MNME_ACISJ tRNA modification GTPase MnmE OS=Acidovorax sp. (strain JS42)
GN=mnmE PE=3 SV=2
Length = 466
Score = 410 bits (1055), Expect = e-114, Method: Compositional matrix adjust.
Identities = 216/482 (44%), Positives = 305/482 (63%), Gaps = 26/482 (5%)
Query: 1 MLTKNS-PIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKN 59
ML ++S PI+ IAT PGRG VGI+R+SGK + ++V+ +C + LKPR ATY F
Sbjct: 1 MLPRHSDPIVAIATAPGRGAVGIVRVSGKQIGALVQALCGRA---LKPREATYLPFRDAA 57
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSI--GLRLAMPGE 117
ID+GL +YF APHSYTGEDV+EL HGGP++L +LL+ CLE + + LRLA PGE
Sbjct: 58 GQAIDQGLALYFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAQGLLPRLRLAEPGE 117
Query: 118 FTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLI 177
FT+RAFLN+K+DL Q EAI DLI+ASTE+AA+ A SLSG FS+ I+ L D L++LR L+
Sbjct: 118 FTERAFLNDKIDLAQAEAIADLIDASTEAAARGASRSLSGDFSREIHTLRDALVHLRMLV 177
Query: 178 EFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGK 237
E + DFPEE + L K D +L +K+ L +++Q+ + AL+R G+ VV+ GQPN GK
Sbjct: 178 EATLDFPEEEIDF-LRKADASGQLSNLKRSLARVMQRASQGALLREGIKVVIAGQPNAGK 236
Query: 238 SSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVE 297
SSL N+L G+++AIVT IAGTTRDK+ +TIQI + DTAG ++++ +EVE
Sbjct: 237 SSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAG-------LRESDDEVE 289
Query: 298 KIGIERTWVELKNSDIIIYVQD-ARYD--KHTDFDKKIIKN----FPMNIPVIYVWNKID 350
+IGI R W E+ +D ++++ D R+ ++ D D I P +PV+ VWNK D
Sbjct: 290 RIGIARAWDEIAGADAVLFLHDLTRWGSAQYQDDDAAIAHTLSNRLPAGVPVVDVWNKAD 349
Query: 351 YSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLN 410
+ + + LSA G++ LR LL I Q+ Y+AR RHI +L
Sbjct: 350 AAPQAAAPAREGESQAVLLSARTGQGLDTLRRQLLQ-IAGWQSAAEGVYIARARHIEALR 408
Query: 411 EANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCI 470
+ +L ++ Q E + L+L+AE+LR L++I G+ T++DLL IFS FCI
Sbjct: 409 AVDAHL---MEAAAQLESDG-PALDLLAEELRLAQNALNTITGEFTSDDLLGVIFSSFCI 464
Query: 471 GK 472
GK
Sbjct: 465 GK 466
>sp|Q2STM2|MNME_BURTA tRNA modification GTPase MnmE OS=Burkholderia thailandensis (strain
E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=mnmE
PE=3 SV=2
Length = 467
Score = 409 bits (1051), Expect = e-113, Method: Compositional matrix adjust.
Identities = 215/480 (44%), Positives = 310/480 (64%), Gaps = 22/480 (4%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-GK-NLWSIVEIVCKKTKKQLKPRFATYSSFFCK 58
+ T + PI+ IAT GRGG+G++R+S G+ + + + +L PR A+Y F
Sbjct: 2 LATDSDPIVAIATASGRGGIGVVRISLGRAGEAAALALSDALCGARLTPRHASYVPFLDG 61
Query: 59 NNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEF 118
+D+G+ +YF APHSYTGE V+EL GHGGPI+L ++L CL+ G++ GLRLA PGEF
Sbjct: 62 AGEPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVLQLVLQRCLDAGRAYGLRLAEPGEF 121
Query: 119 TKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIE 178
T+RAFLN+KLDL Q EA+ DLI ASTE+AA+SA SL G FS+ I+ L+D +I LR L+E
Sbjct: 122 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVDDVIALRMLVE 181
Query: 179 FSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKS 238
+ DFPEE + L D +L I+++L ++ ++ AL+R GL+VVL GQPNVGKS
Sbjct: 182 ATLDFPEEEIDF-LEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGKS 240
Query: 239 SLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEK 298
SL N+L G+++AIVT IAGTTRDK+ +TIQ+ I DTAG +++ +EVEK
Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAG-------LRETEDEVEK 293
Query: 299 IGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
IGI RTW E++ +D+++++ DAR D D+ I FP +PV+ V NK D + ++
Sbjct: 294 IGIARTWGEIERADVVLHLLDARSGLGPD-DEAIAARFPAGVPVVRVLNKTDLTEAPASV 352
Query: 359 NY------KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEA 412
+ ++ + LSA + GI+LLR LL I Q S YLARERH+ +L A
Sbjct: 353 ARVGSGAERADLCEVRLSAKRGDGIDLLRGELLR-IAGWQAGAESVYLARERHLIALRAA 411
Query: 413 NYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+++ A + +Q+ + L+L AE+LR E+L+SI G+ +++DLL IFS+FCIGK
Sbjct: 412 QAHVARAAEHADQN----AQALDLFAEELRLAQEQLNSITGEFSSDDLLGVIFSRFCIGK 467
>sp|A1TWI4|MNME_ACIAC tRNA modification GTPase MnmE OS=Acidovorax citrulli (strain
AAC00-1) GN=mnmE PE=3 SV=1
Length = 482
Score = 409 bits (1050), Expect = e-113, Method: Compositional matrix adjust.
Identities = 211/498 (42%), Positives = 306/498 (61%), Gaps = 42/498 (8%)
Query: 1 MLTKNS-PIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKN 59
ML +++ PI IAT PGRG VGI+R+SG+ + +VE +C + L+PR ATY F
Sbjct: 1 MLPRHTDPIAAIATAPGRGAVGIVRVSGRGIGPLVEALCGRA---LRPREATYLPFRDAG 57
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSI----------G 109
ID+GL +YF APHSYTGEDV+EL HGGP++L +LL+ CL+ G
Sbjct: 58 GQAIDQGLALYFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLQAAGEADRATGRPRLPG 117
Query: 110 LRLAMPGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDK 169
LRLA PGEFT+RAFLN+K+DL Q EAI DLI+ASTE+AA+SA SL+G FS I+ L D
Sbjct: 118 LRLARPGEFTERAFLNDKIDLAQAEAIADLIDASTEAAARSASRSLAGAFSDEIHRLRDA 177
Query: 170 LINLRTLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVL 229
L++LR L+E + DFPEE + L K D +L +++ L +++ + ++ AL+R G+ VV+
Sbjct: 178 LVHLRMLVEATLDFPEEEIDF-LRKADAHGQLAALQRTLAEVMGRTRQGALLREGIKVVI 236
Query: 230 IGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKI 289
GQPN GKSSL N+L G+++AIVT IAGTTRDK+ +TIQI + DTAG +
Sbjct: 237 AGQPNAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAG-------L 289
Query: 290 KKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFD-------KKIIKNFPMNIPV 342
+++ +EVE+IGIER W E+ +D ++++ D D++ ++ + P ++PV
Sbjct: 290 RESDDEVERIGIERAWQEIAAADAVLFLHDLTRAGQPDYEAADAEIAARLARMAPAHVPV 349
Query: 343 IYVWNKIDYS--------GHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTI 394
+ VWNK D + G + A + LSA G++ LR LLD I Q+
Sbjct: 350 VDVWNKSDRAEGSAAAGQGGVATASASGRAAAVRLSARTGEGLDGLRRVLLD-IAGWQSA 408
Query: 395 ESSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGK 454
Y AR RH+ +L + +L ++ Q + + L+L+AE+LR + L++I G+
Sbjct: 409 PEGIYTARARHLEALRAVDMHL---MEAAAQLQCDG-PALDLLAEELRLAQQALNAITGE 464
Query: 455 STTNDLLDNIFSQFCIGK 472
T++DLL IFS FCIGK
Sbjct: 465 FTSDDLLGVIFSSFCIGK 482
>sp|Q46VM0|MNME_CUPPJ tRNA modification GTPase MnmE OS=Cupriavidus pinatubonensis (strain
JMP134 / LMG 1197) GN=mnmE PE=3 SV=1
Length = 475
Score = 408 bits (1049), Expect = e-113, Method: Compositional matrix adjust.
Identities = 224/490 (45%), Positives = 317/490 (64%), Gaps = 33/490 (6%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M PI IAT PGRGG+G++R+SG ++ ++ +C + LKPR ATY F +
Sbjct: 1 MTAPLPPIAAIATAPGRGGIGVVRVSGPDVRPVMHAICGQA---LKPRHATYLPFLDGHG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+ID GL +YF P+SYTGE+V+EL GHGGP+++ MLL+ CL+ G IGLRLA PGEFT+
Sbjct: 58 KVIDHGLALYFPGPNSYTGEEVLELQGHGGPVVMQMLLTRCLQAGHGIGLRLAEPGEFTR 117
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EA+ DLI ASTE+AA+SA S+ G+FS I+ L++K+I+LR L+E +
Sbjct: 118 RAFLNDKLDLAQAEAVADLIEASTEAAARSAARSMEGEFSHAIHTLVEKVIHLRMLVEAT 177
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + L +D +L I+ L ++ Q ++ AL+R GL+VVL GQPNVGKSSL
Sbjct: 178 LDFPEEEIDF-LEASDARGQLATIRNDLGNVLAQARQGALLREGLSVVLAGQPNVGKSSL 236
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G+++AIVT IAGTTRD++ +TIQI I DTAG+ D + +EVE+IG
Sbjct: 237 LNALAGAELAIVTPIAGTTRDRVKETIQIEGIPLHIIDTAGLRD------EATDEVERIG 290
Query: 301 IERTWVELKNSDIIIYVQDAR-YDKHT------DFDKKIIKNFPMNIPVIYVWNKID--- 350
IERTW ++ +DI++++ DA Y +H D ++ P P++ V NKID
Sbjct: 291 IERTWDAIRRADIVLHLVDATDYLRHGLSEIDDAIDDRLSGQLPPGAPIVRVVNKIDVAP 350
Query: 351 ------YSGHQKNINYKN--NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLAR 402
+SG++ ++ N N I++SA GI LLR LL L+ Q+ +LAR
Sbjct: 351 TVGGMMFSGNRPHVVAANGPNPTEIWISARTGSGIELLRKELLRLV-GWQSGNEGTFLAR 409
Query: 403 ERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLD 462
ERH+ +L +A +L A + QSE+ + L+L AE+LR E L+SI G+ T++DLL
Sbjct: 410 ERHLTALRQAQSHLDVAAE---QSERQAQA-LDLFAEELRLAQEHLNSITGEFTSDDLLG 465
Query: 463 NIFSQFCIGK 472
IF++FCIGK
Sbjct: 466 TIFTRFCIGK 475
>sp|Q0KFG6|MNME_CUPNH tRNA modification GTPase MnmE OS=Cupriavidus necator (strain ATCC
17699 / H16 / DSM 428 / Stanier 337) GN=mnmE PE=3 SV=2
Length = 475
Score = 402 bits (1032), Expect = e-111, Method: Compositional matrix adjust.
Identities = 224/490 (45%), Positives = 318/490 (64%), Gaps = 33/490 (6%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M PI IAT PGRGG+G++R+SG ++ ++ VC + LKPR ATY F +
Sbjct: 1 MTAPQVPIAAIATAPGRGGIGVVRVSGPDVGPVMRSVCGQA---LKPRHATYLPFLDGHG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+ID GL +YF AP+SYTGE+V+EL GHGGP+++ MLL+ CL+ G IGLRLA PGEFT+
Sbjct: 58 KVIDHGLALYFPAPNSYTGEEVLELQGHGGPVVMQMLLTRCLQAGDGIGLRLAEPGEFTR 117
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q EA+ DLI ASTE+AA+SA S+ G+FS I L+DK+I+LR L+E +
Sbjct: 118 RAFLNDKLDLAQAEAVADLIEASTEAAARSAARSMEGEFSNAIRQLVDKVIHLRMLVEAT 177
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE + L ++D +L I+ +L ++ Q ++ AL+R GL+VVL GQPNVGKSSL
Sbjct: 178 LDFPEEEIDF-LEQSDARGQLATIRTELSGVLAQARQGALLREGLSVVLAGQPNVGKSSL 236
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G+++AIVT IAGTTRD++ +TIQI+ I DTAG+ + +EVE+IG
Sbjct: 237 LNALAGAELAIVTPIAGTTRDRVRETIQIDGIPLHIIDTAGL------REHAADEVERIG 290
Query: 301 IERTWVELKNSDIIIYVQDAR-YDKH----TD--FDKKIIKNFPMNIPVIYVWNKID--- 350
IERTW ++ +DI++++ DA Y +H TD D ++ P P++ + NKID
Sbjct: 291 IERTWDAIRRADIVLHLVDATDYLRHGLSETDDAIDDQLSGQLPPGSPIVRIVNKIDKAP 350
Query: 351 ------YSGHQKNINYKN--NIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLAR 402
+ G++ ++ N N I++SA GI LLR LL L+ Q+ +LAR
Sbjct: 351 AVGDVVFGGNRPHVVAANGPNPTEIWISARTGAGIELLRRELLRLV-GWQSGNEGNFLAR 409
Query: 403 ERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLD 462
ERH+ +L A +L A + Q+E + L+L AE+LR + L+SI G+ T++DLL
Sbjct: 410 ERHLTALRNAQSHLDIAAE---QAEHQAQA-LDLFAEELRLAQDCLNSITGEFTSDDLLG 465
Query: 463 NIFSQFCIGK 472
IF++FCIGK
Sbjct: 466 TIFTRFCIGK 475
>sp|C1D6H7|MNME_LARHH tRNA modification GTPase MnmE OS=Laribacter hongkongensis (strain
HLHK9) GN=mnmE PE=3 SV=1
Length = 450
Score = 402 bits (1032), Expect = e-111, Method: Compositional matrix adjust.
Identities = 201/458 (43%), Positives = 288/458 (62%), Gaps = 22/458 (4%)
Query: 15 PGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAP 74
PGRGGVG+IRLSG+NL + + +Q +PR A Y+ F + ID GL++YF AP
Sbjct: 15 PGRGGVGVIRLSGRNLLPLAGQLSGG--RQPRPRHALYTDFVASDGQAIDSGLLLYFPAP 72
Query: 75 HSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVE 134
HS+TGEDV+EL GHGGP+IL MLL+ CLE+G RLA PGEFTKRAFLN+K+DL++ E
Sbjct: 73 HSFTGEDVLELQGHGGPVILRMLLARCLELGA----RLAEPGEFTKRAFLNDKMDLVEAE 128
Query: 135 AIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELILNK 194
++ DLI+A +E+AA+SA+ SL G FS I+ L+D LI+LR L E + DFPEE+ L K
Sbjct: 129 SVADLIDAQSETAARSALKSLKGAFSAEIHRLVDTLIDLRMLTEATLDFPEEDDVEWLEK 188
Query: 195 NDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTS 254
D L ++++L ++ ++ A++R G++VVL+GQPNVGKSSL N+L G ++AIVT
Sbjct: 189 ADALGRLAAVRRQLATVLATARQGAILREGMHVVLVGQPNVGKSSLMNALAGDEIAIVTD 248
Query: 255 IAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDII 314
IAGTTRD + + I ++ I DTAG +++ + VE+IGIERTW ++ +D++
Sbjct: 249 IAGTTRDTVREQIVLDGVPLHIIDTAG-------LRETTDTVERIGIERTWQAVERADVV 301
Query: 315 IYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKR 374
+ + D R D T D I+ P +P ++V NKID +G ++ ++ + LSA
Sbjct: 302 LLLVDGR-DGVTAADAAILARLPERLPRVFVHNKIDLTGETAGVSEEDGHVVVRLSARGG 360
Query: 375 IGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNL 434
G++ LR LL+ + Q +LARERH+ ++ A L A + +
Sbjct: 361 AGVDALRQVLLEAV-GWQGESEGLFLARERHLDAIRRAEAELEAA-------GQAYGLAA 412
Query: 435 ELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
EL AE LR LS I G+ + +DLL IFS+FCIGK
Sbjct: 413 ELFAEHLRQAQACLSEITGEFSADDLLGVIFSRFCIGK 450
>sp|Q7NPT9|MNME_CHRVO tRNA modification GTPase MnmE OS=Chromobacterium violaceum (strain
ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB
9131 / NCTC 9757) GN=mnmE PE=3 SV=1
Length = 450
Score = 400 bits (1029), Expect = e-111, Method: Compositional matrix adjust.
Identities = 205/467 (43%), Positives = 305/467 (65%), Gaps = 24/467 (5%)
Query: 6 SPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDK 65
+ I +AT PGRGGVG+IR+SGK+L + + K KPR+ATY+ FF + +D
Sbjct: 8 ATICAVATAPGRGGVGVIRVSGKDLLPFAQAISGG--KTPKPRYATYTDFFDAHGQALDN 65
Query: 66 GLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLN 125
GL+++F P+S+TGEDVIEL GHGGP++L MLL+ C+E+G RLA PGEFTKRAFLN
Sbjct: 66 GLLLFFPGPNSFTGEDVIELQGHGGPVVLKMLLARCVELGA----RLAEPGEFTKRAFLN 121
Query: 126 NKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPE 185
+KLDL Q E++ DLI+AS+E+AA+SA+ SL G FS+ ++ L+D+LINLR L+E + DFPE
Sbjct: 122 DKLDLAQAESVADLIDASSETAARSALKSLKGAFSREVHGLVDELINLRMLVEATLDFPE 181
Query: 186 ENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLV 245
E + L + D L +++ +L+ + K+ A++R G++VVL+GQPNVGKSSL N+L
Sbjct: 182 EEIDF-LKQADAIGRLRRLRAQLVGVQATAKQGAILREGMHVVLVGQPNVGKSSLMNALA 240
Query: 246 GSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTW 305
G D+AIVT IAGTTRD + + I I+ I DTAG+ D + + VEKIGIERTW
Sbjct: 241 GDDIAIVTDIAGTTRDTVREEIVIDGVPVHIIDTAGLRDTD-------DVVEKIGIERTW 293
Query: 306 VELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIA 365
++ +D+ + + D+R + + I++ P +P + V+NK+D SG + ++
Sbjct: 294 QAVERADLALLLVDSREGLTAEV-QSILERLPPALPRVQVFNKVDLSGEAAGLAEQDGHP 352
Query: 366 NIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQ 425
+ LSA G+++L+ LL++I + E +LAR+RH+ ++ A +L A
Sbjct: 353 LVRLSARTHDGVDILKAKLLEMIGYSGADEGV-FLARQRHLDAIARAADHLELA------ 405
Query: 426 SEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
E ++E+ +E+ AE+LR LS I G+ + +DLL IFS+FCIGK
Sbjct: 406 -EADWEQ-VEIFAEELRMAQNALSEITGEFSADDLLGVIFSRFCIGK 450
>sp|Q21QM5|MNME_RHOFD tRNA modification GTPase MnmE OS=Rhodoferax ferrireducens (strain
DSM 15236 / ATCC BAA-621 / T118) GN=mnmE PE=3 SV=1
Length = 469
Score = 397 bits (1020), Expect = e-109, Method: Compositional matrix adjust.
Identities = 207/486 (42%), Positives = 306/486 (62%), Gaps = 41/486 (8%)
Query: 5 NSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIID 64
PI+ IAT PGRG VGI+R+SGK++ S+++ + + QL+ R ATY F ++ ID
Sbjct: 7 QDPIVAIATAPGRGAVGIVRVSGKSIGSLMQALLGR---QLRAREATYLPFLDRSQLAID 63
Query: 65 KGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIG----------KSIGLRLAM 114
+G+ +YF APHS+TGEDV+EL HGGP++L +LL+ CLE G + +GLR A+
Sbjct: 64 QGIALYFPAPHSFTGEDVLELQAHGGPVVLQLLLARCLEAGAELDPVSQMPRLVGLRPAL 123
Query: 115 PGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLR 174
PGEF++RAFLN+K+DL Q EAI DLI+ASTE+AA+SA SLSG FS+ I+IL + LI+LR
Sbjct: 124 PGEFSERAFLNDKIDLAQAEAIADLIDASTEAAARSASRSLSGAFSQEIHILREALIHLR 183
Query: 175 TLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPN 234
L+E + DFPEE + L + D +L +++ L ++Q+ + AL+R G+ VV+ GQPN
Sbjct: 184 MLVEATLDFPEEEIDF-LRQADARGQLSDLQQSLQSVLQKASQGALLREGITVVIAGQPN 242
Query: 235 VGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNIN 294
VGKSSL N+L G+++AIVT IAGTTRDK+ +TIQI + DTAG+ D + +
Sbjct: 243 VGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPVHVIDTAGLRDSD-------D 295
Query: 295 EVEKIGIERTWVELKNSDIIIYVQDARYDKHTDF-------DKKIIKNFPMNIPVIYVWN 347
+EKIGI RTW ++ +D ++++ D TD+ + I ++PVI +WN
Sbjct: 296 VIEKIGIARTWDVIEAADAVLFLHDLTRKNATDYIAADAVIAEAIAGKLSASVPVIEIWN 355
Query: 348 KIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIH 407
K D I+ A + LSA G++ LR LL+L+ Q+ Y+ARERH+
Sbjct: 356 KADV------IDRPCQQAGLQLSAKTGAGLDTLRRKLLELV-GWQSKPEGVYMARERHVQ 408
Query: 408 SLNE-ANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFS 466
+L+ A + ++ + +++ L+L+AE+LR L I G +++DLL IFS
Sbjct: 409 ALHRTAAHLMTAGFHLEAKAQA-----LDLLAEELRLAQNALGEITGDFSSDDLLGVIFS 463
Query: 467 QFCIGK 472
+FCIGK
Sbjct: 464 RFCIGK 469
>sp|Q3JXI0|MNME_BURP1 tRNA modification GTPase MnmE OS=Burkholderia pseudomallei (strain
1710b) GN=mnmE PE=3 SV=1
Length = 467
Score = 395 bits (1016), Expect = e-109, Method: Compositional matrix adjust.
Identities = 221/483 (45%), Positives = 311/483 (64%), Gaps = 28/483 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLS-----GKNLWSIVEIVCKKTKKQLKPRFATYSSF 55
+ T + PI+ IAT GRGG+G++RLS ++ + +C +L PR A+Y F
Sbjct: 2 LATDSDPIVAIATASGRGGIGVVRLSLGRAGEAAARALSDALCGA---RLMPRHASYVPF 58
Query: 56 FCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMP 115
+D+G+ +YF APHSYTGE VIEL GHGGPI+L +LL CL+ G++ GLRLA P
Sbjct: 59 LDGAGEPLDRGIALYFPAPHSYTGEHVIELQGHGGPIVLQLLLQRCLDAGRAHGLRLAEP 118
Query: 116 GEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRT 175
GEFT+RAFLN+KLDL Q EA+ DLI AS+E+AA+SA SL G FS+ I+ L+D +I LR
Sbjct: 119 GEFTRRAFLNDKLDLAQAEAVADLIEASSEAAARSAGRSLDGAFSRDIHALVDDVIALRM 178
Query: 176 LIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235
L+E + DFPEE + L D +L I+++L ++ ++ AL+R GL+VVL GQPNV
Sbjct: 179 LVEATLDFPEEEIDF-LEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNV 237
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKSSL N+L G+++AIVT IAGTTRDK+ +TIQI I DTAG +++ +E
Sbjct: 238 GKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHIIDTAG-------LRETEDE 290
Query: 296 VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355
VEKIGI RTW E++ +D+++++ DAR D+ I FP +PV+ V NK D +G
Sbjct: 291 VEKIGIARTWGEIERADVVLHLLDARSGLGPG-DEAIAARFPDGVPVVRVLNKTDLTGAP 349
Query: 356 KNIN------YKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSL 409
++ + ++ + LSA + GI+LLR LL I Q S YLARERH+ +L
Sbjct: 350 ASVTRTGGGAARADVCEVRLSAKRGDGIDLLRGELLR-IAGWQAGAESVYLARERHLIAL 408
Query: 410 NEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFC 469
A +L+ A + +E+N + L+L AE+LR E+L+SI G+ T++DLL IFS+FC
Sbjct: 409 RAAQAHLARAAE---HAEQNAQA-LDLFAEELRLAQERLNSITGEFTSDDLLGVIFSRFC 464
Query: 470 IGK 472
IGK
Sbjct: 465 IGK 467
>sp|A2SMI8|MNME_METPP tRNA modification GTPase MnmE OS=Methylibium petroleiphilum (strain
PM1) GN=mnmE PE=3 SV=2
Length = 471
Score = 386 bits (991), Expect = e-106, Method: Compositional matrix adjust.
Identities = 204/482 (42%), Positives = 297/482 (61%), Gaps = 31/482 (6%)
Query: 5 NSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIID 64
+ PI+ IAT PGRG VGI+R+SG+ L +++E VC + L+PR A Y F ID
Sbjct: 7 HDPIVAIATAPGRGAVGIVRVSGRGLGALIEAVCGRA---LQPRHAHYGPFLDAQGEAID 63
Query: 65 KGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSI----------GLRLAM 114
+GL ++F APHSYTGE+V+EL HGGP++L +LL+ CLE GLR+A
Sbjct: 64 QGLALHFPAPHSYTGEEVLELQAHGGPVLLQLLLARCLEAAAQPDARSGLPRLRGLRVAE 123
Query: 115 PGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLR 174
PGEFT+RAFLN+KLDL Q EA+ DLI+ASTE+AA+SA +L+G FS+ ++ L D+LI LR
Sbjct: 124 PGEFTERAFLNDKLDLAQAEAVADLIDASTEAAARSAGRALAGAFSQQVDTLRDRLIELR 183
Query: 175 TLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPN 234
L+E + DFPEE + L K D L +I + L ++ + K+ AL+R GL VVL GQPN
Sbjct: 184 MLVEATLDFPEEEIDF-LEKADARGRLARIAEALDAVLARAKQGALLREGLRVVLAGQPN 242
Query: 235 VGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNI- 293
VGKSSL N+L G+++AIVT IAGTTRDK+ +TIQI + DTAG+ + + +
Sbjct: 243 VGKSSLLNALAGAELAIVTPIAGTTRDKVAETIQIEGVPLHVVDTAGL-----RAEDDAR 297
Query: 294 NEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFD---KKIIKNFPMNIPVIYVWNKID 350
+EVE+IG++R+W + +D +I++ D +D + I + P + V+ V NK D
Sbjct: 298 DEVERIGMQRSWGAIGEADAVIFLHDLTRAGDPGYDAAERDIEQRLPAGVHVLDVHNKAD 357
Query: 351 YSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLN 410
+ + LSA G++ LR LL L Q ++AR RH+ +L
Sbjct: 358 AA---AAGAAALAPQALRLSARTGEGLDTLRRRLLQLA-GWQAGSEGVFIARTRHLQALQ 413
Query: 411 EANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCI 470
+L A ++ +++ + L+L+AE+LR H+ L +I G+ T ++LL +IFS+FCI
Sbjct: 414 ATAEHLVRARQLADRA----DAALDLLAEELRLAHDALGAITGRYTPDELLGDIFSRFCI 469
Query: 471 GK 472
GK
Sbjct: 470 GK 471
>sp|Q0AE55|MNME_NITEC tRNA modification GTPase MnmE OS=Nitrosomonas eutropha (strain C91)
GN=mnmE PE=3 SV=2
Length = 451
Score = 386 bits (991), Expect = e-106, Method: Compositional matrix adjust.
Identities = 204/469 (43%), Positives = 289/469 (61%), Gaps = 22/469 (4%)
Query: 5 NSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIID 64
N I IATPPGRGG+GI+R+SG NL + + + K PR A +F +NN +ID
Sbjct: 4 NDTIAAIATPPGRGGIGIVRISGTNLEQLAQTILGKLPD---PRHAGLFNFLDQNNQVID 60
Query: 65 KGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFL 124
+G+V+YF +P+SYTGEDV+ELHGHGGP ++++LL+ CL++G RLA PGEFT RAFL
Sbjct: 61 QGIVLYFPSPNSYTGEDVLELHGHGGPAVMNLLLTRCLQLGA----RLAEPGEFTLRAFL 116
Query: 125 NNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFP 184
N KLDL Q E + DLI AST +AA+ A+ SL G+FS I+ L+ LI+LR L+E + DFP
Sbjct: 117 NEKLDLAQAEGVADLIEASTANAARCAVRSLHGEFSSAIHQLVSALIDLRVLVEATLDFP 176
Query: 185 EENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSL 244
EE + L +L I+ KL +++ ++ L++ G+ VVL GQPNVGKSSL N L
Sbjct: 177 EEEIDF-LQSAHAVEQLASIQTKLEQVLSASRRGNLLQEGIKVVLTGQPNVGKSSLLNRL 235
Query: 245 VGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304
G ++AIVT I GTTRD I ++I+I + DTAG +++ + VE+ GI R
Sbjct: 236 AGDEIAIVTEIPGTTRDTIRQSIEIEGIPLHLIDTAG-------LRETSDIVEQHGIARA 288
Query: 305 WVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
+ ++ +D+++ + D RY T D ++ P +PV+ V NKID SG I +
Sbjct: 289 YAAIEQADLVLLLVDGRYGV-TKEDHSVLARLPKELPVLTVHNKIDLSGQLSRIEEDTSG 347
Query: 365 ANIYLSASKRIGINLLRNTLLDLIE-KTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
IYLS GI LLR LL + +T Y+AR+RH+ +L A L A +
Sbjct: 348 TAIYLSVKSGEGIELLRTVLLKTVGWQTNIAGEGAYMARQRHLQALLHAKELLKRAETWL 407
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ +++ LE++AE+LR + LSSI G+ T++DLL IFS FCIGK
Sbjct: 408 HTADQ-----LEILAEELRLAQQALSSITGEFTSDDLLGEIFSNFCIGK 451
>sp|Q82XA1|MNME_NITEU tRNA modification GTPase MnmE OS=Nitrosomonas europaea (strain ATCC
19718 / NBRC 14298) GN=mnmE PE=3 SV=1
Length = 451
Score = 385 bits (990), Expect = e-106, Method: Compositional matrix adjust.
Identities = 204/472 (43%), Positives = 293/472 (62%), Gaps = 22/472 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
+T N I IATPPGRGG+GI+R+SG NL S+ + K PR A SF +N+
Sbjct: 1 MTSNDTIAAIATPPGRGGIGIVRISGTNLESLARGILGKLPD---PRHAGLFSFLDQNSQ 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
IID+G+ +YF +PHSYTGE+V+EL GHGGP ++++LL CL++G RLA PGEFT R
Sbjct: 58 IIDQGIALYFPSPHSYTGEEVLELQGHGGPAVMNLLLDRCLQLGA----RLAEPGEFTLR 113
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q E + DLI AST +AA+ A+ SL G+FS I+ L+ LI+LR L+E +
Sbjct: 114 AFLNDKLDLAQAEGVADLIAASTANAARCAVRSLHGEFSSTIHQLVSALIDLRVLVEATL 173
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFPEE + L +L I+ KL +++ ++ L++ G+ VVL GQPNVGKSSL
Sbjct: 174 DFPEEEIDF-LQSAHAAEQLATIRAKLEQVLVASRQGNLLQEGIKVVLAGQPNVGKSSLL 232
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N L G +VAIVT I GTTRD + ++I+I + DTAG +++ + VE+ GI
Sbjct: 233 NRLAGDEVAIVTDIPGTTRDTVRQSIEIEGIPLHLIDTAG-------LRETSDIVEQHGI 285
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYK 361
RT+ ++ +D+++ + D+R+ T+ D+ ++ P +PV+ V NKID S +
Sbjct: 286 ARTYAAIEQADLVLLLVDSRHGV-TEEDRSVLTRLPERLPVLTVHNKIDLSAQPPRLEEN 344
Query: 362 NNIANIYLSASKRIGINLLRNTLLDLIEKTQTIES-SPYLARERHIHSLNEANYYLSCAI 420
+ IYLSA GI LLR LL I Y+AR+RH+ +L +A L A
Sbjct: 345 TSGPTIYLSAINGEGIELLRAALLKTAGWQANIAGEGAYMARQRHLQALIQAKELLERAA 404
Query: 421 KIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++++++ LE++AE+LR + LSSI G+ T++DLL IFS FCIGK
Sbjct: 405 AWLHRADQ-----LEILAEELRLAQQALSSITGEFTSDDLLGEIFSSFCIGK 451
>sp|Q477Q5|MNME_DECAR tRNA modification GTPase MnmE OS=Dechloromonas aromatica (strain
RCB) GN=mnmE PE=3 SV=1
Length = 448
Score = 385 bits (989), Expect = e-106, Method: Compositional matrix adjust.
Identities = 213/469 (45%), Positives = 299/469 (63%), Gaps = 22/469 (4%)
Query: 4 KNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNII 63
K+ I IAT PGRGGVG+IR+SG NL + +KT K PR+A+ + F + + I
Sbjct: 2 KSDTIAAIATAPGRGGVGVIRISGSNLLPFAFALTEKTPK---PRYASLADFKAADGSTI 58
Query: 64 DKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAF 123
D GL++YF P S+TGEDV+EL GHGGP+++ MLL+ CL++G RLA PGEF++RAF
Sbjct: 59 DTGLLLYFPNPQSFTGEDVLELQGHGGPVVMQMLLARCLDLGA----RLAEPGEFSRRAF 114
Query: 124 LNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDF 183
LN K+DL Q EA+ DLI+A+T SAA+SA+ SL G+FS+ I L D+LINLR L+E + DF
Sbjct: 115 LNGKMDLAQAEAVADLIDAATASAARSAVRSLQGEFSRAIGELNDELINLRMLVEATLDF 174
Query: 184 PEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNS 243
PEE+ + + N F L +++ KL +I + + L+++GL+VVL GQPNVGKSSL N
Sbjct: 175 PEEDIDFLKAAN-AFGRLERLQLKLAEIFDRAGQGKLLQSGLHVVLAGQPNVGKSSLLNR 233
Query: 244 LVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIER 303
L G D+AIVT IAGTTRD + TIQI I DTAG +++ +EVEKIGIER
Sbjct: 234 LAGDDLAIVTPIAGTTRDALRSTIQIEGIPLHIIDTAG-------LRETDDEVEKIGIER 286
Query: 304 TWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNN 363
+W E++ SD+++ + DAR ++ D++I+ P + I V+NKID + + + N
Sbjct: 287 SWKEIERSDVVLLLVDARTGV-SESDREILARLPDRLQRITVYNKIDLTHRAAERHDEAN 345
Query: 364 IANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKII 423
I LSA GI LLR LL + Q ++ARERH+ +L+ A +++ A ++
Sbjct: 346 GTAISLSAKANQGIELLRQELLRIAGWHQA--EDVFIARERHLRALSAAQEHVAAARNVV 403
Query: 424 NQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ LEL AE+LR + L I G+ T +DLL IFS+FCIGK
Sbjct: 404 EGA----LPALELFAEELRLAQQSLGEITGEFTADDLLGVIFSRFCIGK 448
>sp|B1Y0F6|MNME_LEPCP tRNA modification GTPase MnmE OS=Leptothrix cholodnii (strain ATCC
51168 / LMG 8142 / SP-6) GN=mnmE PE=3 SV=1
Length = 479
Score = 381 bits (978), Expect = e-105, Method: Compositional matrix adjust.
Identities = 207/492 (42%), Positives = 296/492 (60%), Gaps = 33/492 (6%)
Query: 1 MLTKN-SPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKN 59
ML ++ PI IAT PGRG VGI+R+SG+ L ++ + + L+PR A+Y F +
Sbjct: 1 MLPRHHEPIAAIATAPGRGAVGIVRVSGRGLTALATALVGRP---LRPRVASYGPFLDRQ 57
Query: 60 NNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIG---------L 110
ID+GL ++F APHSYTGEDV+EL HGGP++L +LL+ CLE IG L
Sbjct: 58 GGAIDRGLALHFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAGEIGTDGRPRLPGL 117
Query: 111 RLAMPGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKL 170
RLA PGEFT+RA+LN+KLDL Q EA+ DLI+ASTE+AA+SA SLSG FS+ I L D L
Sbjct: 118 RLAQPGEFTERAYLNDKLDLAQAEAVADLIDASTEAAARSAARSLSGDFSRQITHLRDGL 177
Query: 171 INLRTLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLI 230
I LR L+E + DFPEE + L + D L ++ ++L ++ ++ AL+R GL VV+
Sbjct: 178 IELRALVEATLDFPEEEIDF-LQRADAHGRLARLAERLAGLLDTARQGALLREGLRVVIA 236
Query: 231 GQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIK 290
GQPN GKSSL N+L G+++AIVT I GTTRDKI++TIQI + DTAG+ +
Sbjct: 237 GQPNAGKSSLLNALAGAELAIVTPIPGTTRDKISETIQIEGVPVHVIDTAGL----RSDE 292
Query: 291 KNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDF---DKKIIKNFPMNIPVIYVWN 347
+ +EVE+IGI R+W + +D ++ + D + + D I + P ++ +I+V N
Sbjct: 293 QAGDEVERIGISRSWQAIAEADAVLLLHDLTREHEPAYSAADTAIAQRLPADVGLIHVHN 352
Query: 348 KIDYSGHQ-------KNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYL 400
K D + Q + A + LSA GI+ LR LL E ++
Sbjct: 353 KADAAPEQAARVAARLAARQAGDAAGVVLSARTHDGIDALRAALLARAGWHAAPEGV-FI 411
Query: 401 ARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDL 460
ARERH+ +L A +++ A QS + L+L+AE+LR H+ L+ I G +++DL
Sbjct: 412 ARERHVRALRAAATHVTAAQGWAEQS----DSALDLLAEELRSAHDALAEITGSYSSDDL 467
Query: 461 LDNIFSQFCIGK 472
L +IF +FCIGK
Sbjct: 468 LGDIFGRFCIGK 479
>sp|Q5P4P5|MNME_AROAE tRNA modification GTPase MnmE OS=Aromatoleum aromaticum (strain
EbN1) GN=mnmE PE=3 SV=1
Length = 451
Score = 377 bits (969), Expect = e-104, Method: Compositional matrix adjust.
Identities = 199/465 (42%), Positives = 288/465 (61%), Gaps = 25/465 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I +AT PGRGG+G++R+SG L + T ++ KPR A ++ F ID+G+
Sbjct: 12 IAALATAPGRGGIGVVRVSGAALAPFARAL---TGREPKPRHAAFTHFVDAVGKPIDEGI 68
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
++YF APHS+TGEDVIEL GHGGP++L ++L+ CLE+G RLA PGEF++RAFLN K
Sbjct: 69 LLYFPAPHSFTGEDVIELQGHGGPVVLQLVLARCLELGA----RLAEPGEFSRRAFLNGK 124
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL Q EA+ DLI AST AA+SA+ SLSG FS ++ L D LI+LR L+E + DFP+E+
Sbjct: 125 MDLAQAEAVADLIEASTVVAARSAVRSLSGVFSDEMHRLTDALIDLRMLVEATLDFPDED 184
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
E + N L I+ KL +++++ ++ AL+R+G+NVVL+GQPNVGKSSL N L G
Sbjct: 185 VEFLENAR-ALERLDAIRVKLERVLERARQGALLRSGMNVVLVGQPNVGKSSLLNCLAGD 243
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + +TI I + DTAG +++ + VE++G+ERTW E
Sbjct: 244 ERAIVTDIAGTTRDAVRETIAIEGIPIHVIDTAG-------LRETADPVERLGVERTWRE 296
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANI 367
+ +D+I+ + DAR D I P + I ++NKID G + ++ I
Sbjct: 297 IARADVILRIVDARVGPQPG-DDAIDAALPEGVERITIFNKIDLCGLEPARLQHDDGVVI 355
Query: 368 YLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQSE 427
LSA +G++LLR+ LL + LARERH+ +L +A ++ A
Sbjct: 356 QLSAQLALGVDLLRSELLR-VAGWHAHGDDVVLARERHLVALRDALTHVVAA-------- 406
Query: 428 KNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
++ LEL AE+LR ++ I G+ +++DLL IFS+FCIGK
Sbjct: 407 RSQCGALELFAEELRLAQIRIGEITGEFSSDDLLGVIFSRFCIGK 451
>sp|Q5WSF0|MNME_LEGPL tRNA modification GTPase MnmE OS=Legionella pneumophila (strain
Lens) GN=mnmE PE=3 SV=1
Length = 446
Score = 374 bits (960), Expect = e-103, Method: Compositional matrix adjust.
Identities = 206/466 (44%), Positives = 291/466 (62%), Gaps = 26/466 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ IATPPGRGGVGI+R+SG N ++I +C K L+PR AT+ S + NN ++D+GL
Sbjct: 6 IVAIATPPGRGGVGIVRISGPNAYAIA--LCLNGNKALQPRLATFCSLYKGNNEVLDQGL 63
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
V+YFK PHS+TGEDVIE+ HG P++L +L+ + + G RLA PGEF++RAFLN+K
Sbjct: 64 VLYFKGPHSFTGEDVIEIQAHGSPVVLDLLIKESI----AAGARLARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DLIQ EAI DLI AS+++AA+ A+ SL G FSK IN L ++LI LR +E + DFPEE
Sbjct: 120 IDLIQAEAIADLIQASSDTAARMALKSLQGDFSKKINQLNEELIYLRMYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ LN + L +I +L +I Q + L+R GL++V+ G+PN GKS+L N+L G
Sbjct: 180 IDF-LNDGNVSQLLQRIIGRLEEIRSQANQGVLLREGLSLVIAGRPNAGKSTLINNLAGR 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
DVAIVT IAGTTRD + + I ++ I DTAG+ D + + VEK GI+R W E
Sbjct: 239 DVAIVTEIAGTTRDIMREHILLDDIPLHIIDTAGLRDSD-------DLVEKEGIKRAWQE 291
Query: 308 LKNSDIIIYVQDA-RYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIAN 366
LK +D ++ V D D+ ++ P IP+I V+NKID + + K +
Sbjct: 292 LKRADCVLLVVDINNPDQQNSLHNELKLTLPDKIPIITVYNKIDTT----KLTAKCDEHT 347
Query: 367 IYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQS 426
+YLSA G++ L+ + ++ T +LAR RH+ +L+EA A+ + QS
Sbjct: 348 VYLSAKTGEGLDELKKVIKQVVGYQPT--EGQFLARRRHLQALDEAK-----ALLLTGQS 400
Query: 427 EKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ K EL+AEDLR H+ L I G+ T++DLL IFS FCIGK
Sbjct: 401 QLTNHKAGELLAEDLRLAHQTLCEITGEFTSDDLLGKIFSSFCIGK 446
>sp|Q5ZR82|MNME_LEGPH tRNA modification GTPase MnmE OS=Legionella pneumophila subsp.
pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM
7513) GN=mnmE PE=3 SV=1
Length = 446
Score = 373 bits (958), Expect = e-102, Method: Compositional matrix adjust.
Identities = 207/466 (44%), Positives = 290/466 (62%), Gaps = 26/466 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ IATPPGRGGVGI+R+SG N ++I +C K L+PR AT+ S + NN ++D+GL
Sbjct: 6 IVAIATPPGRGGVGIVRISGPNAYAIA--LCLNGNKALQPRLATFCSLYKGNNEVLDQGL 63
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
V+YFK PHS+TGEDVIE+ HG P++L +L+ + + G RLA PGEF++RAFLN+K
Sbjct: 64 VLYFKGPHSFTGEDVIEIQAHGSPVVLDLLIKESI----AAGARLARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DLIQ EAI DLI AS+++AA+ A+ SL G FSK IN L ++LI LR +E + DFPEE
Sbjct: 120 IDLIQAEAIADLIQASSDTAARMALKSLQGDFSKKINQLNEELIYLRMYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ LN + L KI +L I Q + L+R GL++V+ G+PN GKS+L N+L G
Sbjct: 180 IDF-LNDGNVSQLLQKIIGRLEDIRSQANQGVLLREGLSLVIAGRPNAGKSTLINNLAGR 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
DVAIVT IAGTTRD + + I ++ I DTAG+ D + + VEK GI+R W E
Sbjct: 239 DVAIVTEIAGTTRDIMREHILLDDIPLHIIDTAGLRDSD-------DLVEKEGIKRAWQE 291
Query: 308 LKNSDIIIYVQDA-RYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIAN 366
LK +D ++ V D D+ ++ P IP+I V+NKID + + K +
Sbjct: 292 LKRADCVLLVVDINNPDQQNSLLNELRLTLPNKIPIITVYNKIDTT----KLTAKCDEHT 347
Query: 367 IYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQS 426
+YLSA G++ L+ + ++ T +LAR RH+ +L+EA A+ + QS
Sbjct: 348 VYLSAKTGEGLDELKKVIKQVVGYQPT--EGQFLARRRHLQALDEAK-----ALLLTGQS 400
Query: 427 EKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ K EL+AEDLR H+ L I G+ T++DLL IFS FCIGK
Sbjct: 401 QLTNHKAGELLAEDLRLAHQTLCEITGEFTSDDLLGKIFSSFCIGK 446
>sp|A5IIK3|MNME_LEGPC tRNA modification GTPase MnmE OS=Legionella pneumophila (strain
Corby) GN=mnmE PE=3 SV=1
Length = 446
Score = 373 bits (957), Expect = e-102, Method: Compositional matrix adjust.
Identities = 206/466 (44%), Positives = 291/466 (62%), Gaps = 26/466 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ IATPPGRGGVGI+R+SG N ++I +C K L+PR AT+ S + NN ++D+GL
Sbjct: 6 IVAIATPPGRGGVGIVRISGPNAYAIA--LCLNGNKALQPRLATFCSLYKGNNEVLDQGL 63
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
V+YFK PHS+TGEDVIE+ HG P++L +L+ + + G RLA PGEF++RAFLN+K
Sbjct: 64 VLYFKGPHSFTGEDVIEIQAHGSPVVLDLLIKESI----AAGARLARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DLIQ EAI DLI AS+++AA+ A+ SL G FSK IN L ++LI LR +E + DFPEE
Sbjct: 120 IDLIQAEAIADLIQASSDTAARMALKSLQGDFSKKINQLNEELIYLRMYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ LN + L +I +L +I Q + L+R GL++V+ G+PN GKS+L N+L G
Sbjct: 180 IDF-LNDGNVSQLLQRIIGRLEEIRSQANQGVLLREGLSLVIAGRPNAGKSTLINNLAGR 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
DVAIVT IAGTTRD + + I ++ I DTAG+ D + + VEK GI+R W E
Sbjct: 239 DVAIVTEIAGTTRDIMREHILLDDIPLHIIDTAGLRDSD-------DLVEKEGIKRAWQE 291
Query: 308 LKNSDIIIYVQDA-RYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIAN 366
LK +D ++ V D D+ ++ P IP+I V+NKID + + K +
Sbjct: 292 LKRADCVLLVVDINNPDQQNSLLNELRLTLPNKIPIITVYNKIDTT----KLTAKCDEHT 347
Query: 367 IYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQS 426
+YLSA G++ L+ + ++ T +LAR RH+ +L+EA A+ + QS
Sbjct: 348 VYLSAKTGEGLDELKKVIKQVVGYQPT--EGQFLARRRHLQALDEAK-----ALLLTGQS 400
Query: 427 EKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ K EL+AEDLR H+ L I G+ T++DLL IFS FCIGK
Sbjct: 401 QLTNHKAGELLAEDLRLAHQTLCEITGEFTSDDLLGKIFSSFCIGK 446
>sp|Q65VC3|MNME_MANSM tRNA modification GTPase MnmE OS=Mannheimia succiniciproducens
(strain MBEL55E) GN=mnmE PE=3 SV=1
Length = 454
Score = 372 bits (955), Expect = e-102, Method: Compositional matrix adjust.
Identities = 207/477 (43%), Positives = 293/477 (61%), Gaps = 28/477 (5%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
M+TK + I+ ATP GRGGVGI+R+SG + + V K +LKPR A Y F ++
Sbjct: 1 MMTKET-IVAQATPIGRGGVGILRVSGPLATEVAKAVVDK---ELKPRMANYLPFKDEDG 56
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
I+D+G+ +YFK+P+S+TGEDV+E GHGG ++L +LL L++ G+RLA PGEF++
Sbjct: 57 TILDQGIALYFKSPNSFTGEDVVEFQGHGGQVVLDLLLKRILQVK---GVRLARPGEFSE 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
+AFLN+KLDL Q EAI DLINAS+E AA+SA+ SL G+FSK IN L+D +I LRT +E +
Sbjct: 114 QAFLNDKLDLAQAEAIADLINASSEQAARSALKSLQGEFSKKINQLVDSVIYLRTYVEAA 173
Query: 181 FDFPEENQELILNK--NDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKS 238
DFP+E + + + N+LI +L K+ + K+ +++R G+ VV+ G+PN GKS
Sbjct: 174 IDFPDEEIDFLADGKIEGHLNDLI---GQLDKVRSEAKQGSILREGMKVVIAGRPNAGKS 230
Query: 239 SLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEK 298
SL N+L G + AIVT IAGTTRD + + I I+ I DTAG+ D +EVE+
Sbjct: 231 SLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT-------DEVER 283
Query: 299 IGIERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGHQ 355
IGI R W E++ +D +I + D+ D D+ + + P NIPV V NK D SG +
Sbjct: 284 IGITRAWNEIEQADRVILMLDSTDPDSKDLDQAKAEFLSKLPGNIPVTIVRNKSDLSGEK 343
Query: 356 KNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYY 415
++I + I LSA + G++LLR L + QT +LAR RH+ +L A +
Sbjct: 344 ESIEEQEGFTVIRLSAQTQQGVSLLREHLKQSM-GYQTGTEGGFLARRRHLEALEHAAEH 402
Query: 416 LSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L + Q EL+AE+LR + L I GK T++DLL NIFS FCIGK
Sbjct: 403 LQIGRVQLTQFHAG-----ELLAEELRIVQDYLGEITGKFTSDDLLGNIFSSFCIGK 454
>sp|Q5X0M3|MNME_LEGPA tRNA modification GTPase MnmE OS=Legionella pneumophila (strain
Paris) GN=mnmE PE=3 SV=1
Length = 446
Score = 371 bits (952), Expect = e-102, Method: Compositional matrix adjust.
Identities = 204/466 (43%), Positives = 290/466 (62%), Gaps = 26/466 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ IATPPGRGGVGI+R+SG ++I +C K L+PR AT+ S + NN ++D+GL
Sbjct: 6 IVAIATPPGRGGVGIVRISGPKAYAIA--LCLNGNKALQPRLATFCSLYKGNNEVLDQGL 63
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
V+YFK PHS+TGED+IE+ HG P++L +L+ + + G RLA PGEF++RAFLN+K
Sbjct: 64 VLYFKGPHSFTGEDIIEIQAHGSPVVLDLLIKESI----AAGARLARPGEFSERAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DLIQ EAI DLI AS+++AA+ A+ SL G FSK IN L ++LI LR +E + DFPEE
Sbjct: 120 IDLIQAEAIADLIQASSDTAARMALKSLQGDFSKKINQLNEELIYLRMYVEAAIDFPEEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ LN + L +I +L +I Q + L+R GL++V+ G+PN GKS+L N+L G
Sbjct: 180 IDF-LNDGNVSQLLQRIIGRLEEIRSQANQGVLLREGLSLVIAGRPNAGKSTLINNLAGR 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
DVAIVT IAGTTRD + + I ++ I DTAG+ D + + VEK GI+R W E
Sbjct: 239 DVAIVTEIAGTTRDIMREHILLDDIPLHIIDTAGLRDSD-------DLVEKEGIKRAWQE 291
Query: 308 LKNSDIIIYVQDA-RYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIAN 366
LK +D ++ V D D+ ++ P IP+I V+NKID + + K +
Sbjct: 292 LKRADCVLLVVDINNRDQQNSLLNELRLTLPNKIPIITVYNKIDTT----KLTAKCDEHT 347
Query: 367 IYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQS 426
+YLSA G++ L+ + ++ T +LAR RH+ +L+EA A+ + QS
Sbjct: 348 VYLSAKTGEGLDELKKVIKQVVGYQPT--EGQFLARRRHLQALDEAK-----ALLLTGQS 400
Query: 427 EKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ K EL+AEDLR H+ L I G+ T++DLL IFS FCIGK
Sbjct: 401 QLTNHKAGELLAEDLRLAHQTLCEITGEFTSDDLLGKIFSSFCIGK 446
>sp|Q0I0Z2|MNME_HAES1 tRNA modification GTPase MnmE OS=Haemophilus somnus (strain 129Pt)
GN=mnmE PE=3 SV=1
Length = 452
Score = 369 bits (948), Expect = e-101, Method: Compositional matrix adjust.
Identities = 204/468 (43%), Positives = 287/468 (61%), Gaps = 24/468 (5%)
Query: 8 IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGL 67
I+ ATP GRGGVGI+R+SG + E V KT L PR A Y F + ++D+G+
Sbjct: 6 IVAQATPIGRGGVGILRVSGPLAQQVAEQVLGKT---LTPRMANYLPFKDSDGTVLDQGI 62
Query: 68 VIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127
+YFKAP+S+TGEDV+EL GHGG I++ +LL L+I G+RLA PGEF+++AFLN+K
Sbjct: 63 ALYFKAPNSFTGEDVLELQGHGGQIVMDLLLKRILQID---GIRLARPGEFSEQAFLNDK 119
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
LDL Q EAI DLI AS+E AA+SA+ SL G+FS IN L+D +I LRT +E + DFP+E
Sbjct: 120 LDLAQAEAIADLIEASSEQAARSALKSLQGEFSNKINELVDSVIYLRTYVEAAIDFPDEE 179
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ L L +I KL K+ + K+ A++R G+ VV+ G+PN GKSSL N+L G
Sbjct: 180 IDF-LADGKIETHLREIIAKLAKVKNEAKQGAILREGMKVVIAGRPNAGKSSLLNTLAGR 238
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
+ AIVT IAGTTRD + + I I+ I DTAG+ D +EVEKIGI R W E
Sbjct: 239 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT-------DEVEKIGIRRAWDE 291
Query: 308 LKNSDIIIYVQDARYDKHTDFD---KKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNI 364
++ +D I+ + D+ + + D + + P +IP+ V NK D SG + ++ +N +
Sbjct: 292 IEQADRILLILDS-TENQVELDLVQSEFMAKLPPHIPLTIVRNKADLSGEAEVLDEQNGL 350
Query: 365 ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIIN 424
A I LSA + G++LLR L + Q +LAR RH+ +L +A+ +L + +
Sbjct: 351 AVISLSAKTQKGVDLLRQHLKQSM-GYQVCTEGGFLARRRHLEALEQADIHLQAGLIQLT 409
Query: 425 QSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ EL+AE+LR LS I G+ T++DLL NIFS FCIGK
Sbjct: 410 EFYAG-----ELVAEELRIAQHHLSEITGQFTSDDLLGNIFSSFCIGK 452
>sp|Q2Y5A9|MNME_NITMU tRNA modification GTPase MnmE OS=Nitrosospira multiformis (strain
ATCC 25196 / NCIMB 11849) GN=mnmE PE=3 SV=1
Length = 452
Score = 369 bits (947), Expect = e-101, Method: Compositional matrix adjust.
Identities = 195/473 (41%), Positives = 291/473 (61%), Gaps = 23/473 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
+T++ I IATPPGRGG+G++R+SG+NL S+ V + PR A+ + F +N+
Sbjct: 1 MTRSDVIAAIATPPGRGGIGVVRVSGRNLQSLALKVAGCVPE---PRRASLTRFRDENDR 57
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
+ID+G+ +YF AP SYTGE+V+EL GHGGP ++++LL+SCL S G RLA PGEFT R
Sbjct: 58 VIDQGIALYFPAPQSYTGEEVLELQGHGGPAVMNLLLASCL----SAGARLAQPGEFTLR 113
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLNNKLDL Q E++ DLI+ASTE AA+ A+ SL G+FS I+ + L +LR L+E S
Sbjct: 114 AFLNNKLDLAQAESVADLIDASTEEAARCAIRSLQGEFSNAIHTSVQALTDLRMLVEASL 173
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DF EE E I + F L I+++L ++ ++ +L+R G+ + L+GQPNVGKSSL
Sbjct: 174 DFSEEEIEFISGRELEFR-LEHIRQQLEQVFSAARQGSLLREGIWIALVGQPNVGKSSLL 232
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N L G +VA+VT + GTTRD I + I+I + DTAG +++ + +EK+G+
Sbjct: 233 NRLAGEEVALVTEVPGTTRDVIRQVIEIEGVPMHLLDTAG-------LRETEDAIEKMGM 285
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDY--SGHQKNIN 359
RT + + I++ + D+R T D+ I+ + P + +I V NK D S ++
Sbjct: 286 ARTRSTIDKASIVLLLVDSRVGI-TPEDQAILASLPPGLRLIVVHNKTDLLESPPNSTVS 344
Query: 360 YKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCA 419
A+I++SA GI L+ LL++I + ++AR+RH+ +L A +L A
Sbjct: 345 TATATADIWVSAKTGAGIGSLQQGLLEMIGWQPSTGEGAFMARQRHLSALTAARTHLEAA 404
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+ N ++ +EL AE+LR LSSI G+ + +DLL IFS+FCIGK
Sbjct: 405 CALANSLDQ-----VELFAEELRLAQLALSSITGEFSADDLLGEIFSRFCIGK 452
>sp|Q31DJ0|MNME_THICR tRNA modification GTPase MnmE OS=Thiomicrospira crunogena (strain
XCL-2) GN=mnmE PE=3 SV=2
Length = 451
Score = 368 bits (945), Expect = e-101, Method: Compositional matrix adjust.
Identities = 194/471 (41%), Positives = 289/471 (61%), Gaps = 22/471 (4%)
Query: 2 LTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNN 61
+ N I IAT PGRGGVGI+R+SG I E V K K PR+A Y F
Sbjct: 3 FSTNDTIAAIATAPGRGGVGIVRVSGIKAAEIAEHVLGKCPK---PRYAHYGPFLGAEGQ 59
Query: 62 IIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKR 121
++D+G+ ++F PHS+TGE+V+EL GHGGP+IL LL +++G RLA PGEF+K+
Sbjct: 60 VLDQGIALFFPNPHSFTGENVLELQGHGGPVILQWLLERVVQLGA----RLAEPGEFSKQ 115
Query: 122 AFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF 181
AFLN+KLDL Q EAI DLI+AS++ AA+SA+ SL G FS +N L+++LI LR +E +
Sbjct: 116 AFLNDKLDLAQAEAIADLIDASSQQAARSALRSLQGDFSNQVNELVEQLIQLRIYVEAAI 175
Query: 182 DFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLF 241
DFPEE + L+ +L I ++L +++ ++ L+R G++VV++G+PN GKSSL
Sbjct: 176 DFPEEEIDF-LSDGKVAGQLQHILEQLHRVLASAQQGVLLREGMSVVILGRPNAGKSSLL 234
Query: 242 NSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301
N+L G + AIVT IAGTTRD + + IQI+ + DTAG +++ + VE+IGI
Sbjct: 235 NALSGRESAIVTDIAGTTRDIVKEEIQIDGMPLHVLDTAG-------LREATDAVEQIGI 287
Query: 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYK 361
+R W ++ +D I+ + A H + D+ I++ P +IPV + NKID ++
Sbjct: 288 QRAWAAIEEADRILVMVQANEAIHPE-DQAILEKMPSHIPVTLIHNKIDLIEKSPELSEN 346
Query: 362 NNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIK 421
+ I+LSA +G++LL+ L + QT E ++AR+RH+ +L A +++
Sbjct: 347 DGETEIWLSAKHHLGLDLLKQHLKTEMGYAQT-EEGVFMARKRHLEALETALHFVETG-- 403
Query: 422 IINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
Q ++F EL+AEDLR + LS I G+ T++DLL IF+ FCIGK
Sbjct: 404 --QQQLEHFAAG-ELLAEDLRQAQQALSEITGQFTSDDLLGRIFTSFCIGK 451
>sp|Q9JWB7|MNME_NEIMA tRNA modification GTPase MnmE OS=Neisseria meningitidis serogroup A
/ serotype 4A (strain Z2491) GN=mnmE PE=3 SV=1
Length = 448
Score = 366 bits (939), Expect = e-100, Method: Compositional matrix adjust.
Identities = 205/473 (43%), Positives = 286/473 (60%), Gaps = 27/473 (5%)
Query: 2 LTKNSPIIG-IATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
++ N P I +AT PGRGGVG+IR+SGKNL + + +C KT K PR ATY+ F ++
Sbjct: 1 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKTPK---PRVATYADFTDEDG 57
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
ID GL+++F AP S+TGEDVIEL GHGGP+++ MLL+ CLE+G RLA PGEFTK
Sbjct: 58 QAIDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLELGA----RLAEPGEFTK 113
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN+KLDL Q E + DLI+AS+ SAA+ A+ SL G FS+ I+ L++ LI LR L+E +
Sbjct: 114 RAFLNDKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEAT 173
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
DFPEE+ + L D +L +++ + ++ ++ A++R GLNVVL+G PNVGKSSL
Sbjct: 174 LDFPEEDIDF-LEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSL 232
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300
N+L G +VAIVT IAGTTRD + + I I+ I DTAG +++ + VE+IG
Sbjct: 233 LNALAGDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAG-------LRETDDVVERIG 285
Query: 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY 360
IER+ + +D+ + + D R + + + I+ P+ + I + +K D H
Sbjct: 286 IERSRKAVSEADVALVLVDPR-EGLNEKTRAILDALPLELKRIEIHSKSDLHAHAAGGFG 344
Query: 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP-YLARERHIHSLNEANYYLSCA 419
I LSA G++ L+ TLL E ES +LAR RH+++L A LS A
Sbjct: 345 TGAETVIALSAKTGDGLDALKRTLLR--EAGWQGESEGLFLARTRHVNALKAAQEELSLA 402
Query: 420 IKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
N +EL AE LR I G+ T +DLL IFS+FCIGK
Sbjct: 403 ALCGNH-------QIELFAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 173,008,961
Number of Sequences: 539616
Number of extensions: 7509047
Number of successful extensions: 33300
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1663
Number of HSP's successfully gapped in prelim test: 348
Number of HSP's that attempted gapping in prelim test: 27242
Number of HSP's gapped (non-prelim): 2859
length of query: 472
length of database: 191,569,459
effective HSP length: 121
effective length of query: 351
effective length of database: 126,275,923
effective search space: 44322848973
effective search space used: 44322848973
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)